S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 2628475 2629962 1 1488 NC_007795.1 velvet.1 99.93 True CONTIG velvet.1 1488 correct CONTIG velvet.2 3279 unaligned CONTIG velvet.3 4818 unaligned 292051 292152 312 211 NC_007795.1 velvet.4 96.08 True CONTIG velvet.4 312 correct CONTIG velvet.6 900 unaligned 2194493 2201216 6724 1 NC_007795.1 velvet.7 100.0 True fake: scaffold gap size wrong estimation (local) 2157748 2194378 43464 6834 NC_007795.1 velvet.7 99.95 True local misassembly 2128190 2157647 72933 43465 NC_007795.1 velvet.7 99.94 True CONTIG velvet.7 72933 correct CONTIG velvet.8 980 unaligned CONTIG velvet.10 8104 unaligned CONTIG velvet.14 625 unaligned CONTIG velvet.15 1151 unaligned CONTIG velvet.19 352 unaligned CONTIG velvet.20 560 unaligned CONTIG velvet.22 658 unaligned CONTIG velvet.23 296 unaligned 36783 42698 5916 1 NC_007795.1 velvet.24 99.86 True CONTIG velvet.24 5916 correct CONTIG velvet.25 238 unaligned CONTIG velvet.27 1813 unaligned 56424 56743 320 1 NC_007795.1 velvet.31 100.0 True CONTIG velvet.31 320 correct CONTIG velvet.32 349 unaligned 57807 58042 236 1 NC_007795.1 velvet.33 100.0 True CONTIG velvet.33 236 correct CONTIG velvet.35 3147 unaligned 2571093 2571463 371 1 NC_007795.1 velvet.36 99.46 True CONTIG velvet.36 371 correct 493037 498128 1 5030 NC_007795.1 velvet.38 98.64 True relocation, scaffold gap is present, inconsistency = 1575247 2073485 2122610 54122 5140 NC_007795.1 velvet.38 99.66 True relocation, inconsistency = 566182 1503547 1506424 57877 55001 NC_007795.1 velvet.38 99.51 True relocation, inconsistency = -567225 2069446 2069895 59203 58754 NC_007795.1 velvet.38 98.44 True CONTIG velvet.38 59610 misassembled 1461617 1462574 1 958 NC_007795.1 velvet.41 100.0 True CONTIG velvet.41 3609 correct_unaligned 399737 400951 1 1215 NC_007795.1 velvet.42 99.92 True CONTIG velvet.42 1215 correct 1706695 1706919 225 1 NC_007795.1 velvet.43 100.0 True CONTIG velvet.43 225 correct 385427 385643 217 1 NC_007795.1 velvet.45 100.0 True CONTIG velvet.45 217 correct CONTIG velvet.47 242 unaligned 407030 407272 1 243 NC_007795.1 velvet.48 100.0 True CONTIG velvet.48 243 correct 2557379 2557620 1 242 NC_007795.1 velvet.49 98.35 True CONTIG velvet.49 242 correct 2265214 2265551 1 338 NC_007795.1 velvet.53 99.41 True CONTIG velvet.53 338 correct 2201800 2238565 36773 1 NC_007795.1 velvet.89 99.95 True relocation, scaffold gap is present, inconsistency = 1651454 498578 550095 37024 88512 NC_007795.1 velvet.89 99.88 True relocation, inconsistency = 4872 555032 589867 88577 123412 NC_007795.1 velvet.89 99.97 True fake: scaffold gap size wrong estimation (local) 590063 603805 123425 137159 NC_007795.1 velvet.89 99.92 True fake: scaffold gap size wrong estimation (local) 604015 613170 137350 146444 NC_007795.1 velvet.89 99.33 True relocation, inconsistency = -13357 613168 623839 159799 170460 NC_007795.1 velvet.89 99.68 True local misassembly 624262 720102 170461 266285 NC_007795.1 velvet.89 99.96 True fake: scaffold gap size wrong estimation (local) 720272 730500 266397 276561 NC_007795.1 velvet.89 99.32 True fake: scaffold gap size wrong estimation (local) 730668 746494 276668 292494 NC_007795.1 velvet.89 99.98 True local misassembly 746490 757478 292973 303961 NC_007795.1 velvet.89 100.0 True relocation, inconsistency = 1199 758678 762786 303962 308070 NC_007795.1 velvet.89 99.98 True fake: scaffold gap size wrong estimation (local) 762925 768113 308195 313383 NC_007795.1 velvet.89 99.98 True fake: scaffold gap size wrong estimation (local) 768673 794907 313730 340037 NC_007795.1 velvet.89 99.97 True fake: scaffold gap size wrong estimation (local) 795209 795337 340180 340308 NC_007795.1 velvet.89 98.95 True relocation, inconsistency = 1852478 2647816 2723264 415757 340309 NC_007795.1 velvet.89 99.97 True fake: scaffold gap size wrong estimation (local) 2629891 2647655 433681 415917 NC_007795.1 velvet.89 99.98 True relocation, inconsistency = 1458 2613601 2628432 448512 433682 NC_007795.1 velvet.89 99.97 True fake: scaffold gap size wrong estimation (local) 2581995 2613345 480087 448707 NC_007795.1 velvet.89 99.95 True fake: scaffold gap size wrong estimation (local) 2578231 2581461 483272 480161 NC_007795.1 velvet.89 96.09 True fake: scaffold gap size wrong estimation (local) 2573597 2578070 488016 483498 NC_007795.1 velvet.89 98.52 True relocation, inconsistency = 2304 2527684 2571292 531608 488017 NC_007795.1 velvet.89 99.9 True fake: scaffold gap size wrong estimation (local) 2486982 2527446 572218 531790 NC_007795.1 velvet.89 99.89 True local misassembly 2451963 2486790 607043 572219 NC_007795.1 velvet.89 99.96 True local misassembly 2426013 2451780 632809 607044 NC_007795.1 velvet.89 99.93 True fake: scaffold gap size wrong estimation (local) 2399404 2425530 659279 633269 NC_007795.1 velvet.89 99.51 True local misassembly 2378764 2399103 679620 659280 NC_007795.1 velvet.89 99.97 True fake: scaffold gap size wrong estimation (local) 2335878 2378342 722371 679918 NC_007795.1 velvet.89 99.94 True relocation, inconsistency = 2071671 258610 264206 722372 727968 NC_007795.1 velvet.89 99.93 True fake: scaffold gap size wrong estimation (local) 264749 289717 728409 753377 NC_007795.1 velvet.89 99.98 True fake: scaffold gap size wrong estimation (local) 289906 292152 753509 755788 NC_007795.1 velvet.89 98.56 True relocation, scaffold gap is present, inconsistency = 1973154 2266035 2335667 826145 756517 NC_007795.1 velvet.89 99.97 True relocation, scaffold gap is present, inconsistency = 1975325 289920 290693 826162 826937 NC_007795.1 velvet.89 96.03 True fake: scaffold gap size wrong estimation (local) 291593 291694 827251 827352 NC_007795.1 velvet.89 95.1 True local misassembly 292111 292407 828153 828449 NC_007795.1 velvet.89 96.63 True fake: scaffold gap size wrong estimation (local) 293848 336831 829193 872176 NC_007795.1 velvet.89 99.95 True fake: scaffold gap size wrong estimation (local) 336954 391307 872324 926676 NC_007795.1 velvet.89 99.94 True fake: scaffold gap size wrong estimation (local) 392667 399766 927970 935017 NC_007795.1 velvet.89 99.15 True fake: scaffold gap size wrong estimation (local) 399581 406208 935029 941562 NC_007795.1 velvet.89 97.07 True fake: scaffold gap size wrong estimation (local) 405968 406444 942104 942580 NC_007795.1 velvet.89 97.69 True fake: scaffold gap size wrong estimation (local) 406394 406492 943027 943125 NC_007795.1 velvet.89 96.97 True relocation, scaffold gap is present, inconsistency = -4979 405663 405893 947275 947505 NC_007795.1 velvet.89 100.0 True fake: scaffold gap size wrong estimation (local) 406334 407057 947516 948239 NC_007795.1 velvet.89 100.0 True fake: scaffold gap size wrong estimation (local) 407274 448742 948250 989718 NC_007795.1 velvet.89 99.96 True CONTIG velvet.89 989718 misassembled 1333172 1348923 15752 1 NC_007795.1 velvet.93 99.99 True fake: scaffold gap size wrong estimation (local) 1251863 1332569 96932 16221 NC_007795.1 velvet.93 99.96 True fake: scaffold gap size wrong estimation (extensive) 1248967 1250424 98400 96943 NC_007795.1 velvet.93 99.93 True relocation, scaffold gap is present, inconsistency = -2904 1250671 1251860 99601 98411 NC_007795.1 velvet.93 99.93 True relocation, inconsistency = 1674 1074562 1248996 273883 99602 NC_007795.1 velvet.93 99.89 True local misassembly 1004190 1074392 344084 273884 NC_007795.1 velvet.93 99.97 True fake: scaffold gap size wrong estimation (local) 978231 1004057 370146 344383 NC_007795.1 velvet.93 99.74 True fake: scaffold gap size wrong estimation (local) 860634 977790 487289 370157 NC_007795.1 velvet.93 99.95 True fake: scaffold gap size wrong estimation (local) 815656 860395 532220 487481 NC_007795.1 velvet.93 99.98 True relocation, inconsistency = 603294 1463880 1464041 532411 532573 NC_007795.1 velvet.93 95.09 True fake: scaffold gap size wrong estimation (extensive) 1464575 1488102 535686 559213 NC_007795.1 velvet.93 97.87 True relocation, inconsistency = 638468 811886 815672 573434 569648 NC_007795.1 velvet.93 99.97 True fake: scaffold gap size wrong estimation (local) 795445 811520 589770 573694 NC_007795.1 velvet.93 99.92 True relocation, inconsistency = 1912213 2723734 2778744 589771 644749 NC_007795.1 velvet.93 99.89 True fake: scaffold gap size wrong estimation (local) 2778932 2815217 644883 681167 NC_007795.1 velvet.93 99.97 True fake: scaffold gap size wrong estimation (local) 2815347 2821361 681267 687280 NC_007795.1 velvet.93 99.97 True fake: not a misassembly [linear representation of circular genome] 1 24178 687281 711452 NC_007795.1 velvet.93 99.94 True fake: scaffold gap size wrong estimation (local) 24312 34154 711562 721404 NC_007795.1 velvet.93 99.98 True CONTIG velvet.93 762333 misassembled 2812103 2812615 1 513 NC_007795.1 velvet.94 100.0 True CONTIG velvet.94 513 correct 1813874 1814189 1 316 NC_007795.1 velvet.95 99.68 True CONTIG velvet.95 316 correct 1820935 1821397 463 1 NC_007795.1 velvet.103 99.78 True CONTIG velvet.103 463 correct 594663 594887 225 1 NC_007795.1 velvet.109 100.0 True CONTIG velvet.109 225 correct 34152 36704 11915 14588 NC_007795.1 velvet.115 95.92 True relocation, inconsistency = 6130 42835 56159 14589 27876 NC_007795.1 velvet.115 99.01 True local misassembly 56982 57134 27877 28029 NC_007795.1 velvet.115 98.87 True fake: scaffold gap size wrong estimation (local) 58184 115349 29087 86111 NC_007795.1 velvet.115 99.71 True relocation, scaffold gap is present, inconsistency = 1234477 1349837 1362963 86122 99248 NC_007795.1 velvet.115 99.98 True relocation, scaffold gap is present, inconsistency = 458394 1821368 1840496 118361 99259 NC_007795.1 velvet.115 99.83 True fake: scaffold gap size wrong estimation (local) 1815421 1820737 124188 118872 NC_007795.1 velvet.115 99.98 True relocation, scaffold gap is present, inconsistency = 437085 1363073 1378325 124199 139451 NC_007795.1 velvet.115 99.92 True fake: scaffold gap size wrong estimation (local) 1378711 1381543 139507 142339 NC_007795.1 velvet.115 99.93 True local misassembly 1381922 1384910 142340 145328 NC_007795.1 velvet.115 99.97 True local misassembly 1384897 1386881 145408 147392 NC_007795.1 velvet.115 100.0 True relocation, inconsistency = -3174 1386868 1460838 150553 224523 NC_007795.1 velvet.115 99.97 True fake: scaffold gap size wrong estimation (local) 1461193 1461646 224861 225313 NC_007795.1 velvet.115 99.78 True relocation, scaffold gap is present, inconsistency = 334756 1796413 1813643 225324 242568 NC_007795.1 velvet.115 99.96 True fake: scaffold gap size wrong estimation (local) 1815048 1815129 243887 243968 NC_007795.1 velvet.115 100.0 True relocation, scaffold gap is present, inconsistency = -304093 1511047 1705682 243979 438564 NC_007795.1 velvet.115 99.95 True fake: scaffold gap size wrong estimation (local) 1707659 1760721 440376 493400 NC_007795.1 velvet.115 99.88 True local misassembly 1760881 1776406 493401 508926 NC_007795.1 velvet.115 99.98 True fake: scaffold gap size wrong estimation (local) 1776945 1795677 509249 527965 NC_007795.1 velvet.115 99.87 True CONTIG velvet.115 528332 misassembled CONTIG velvet.118 643 unaligned CONTIG velvet.123 239 unaligned 56151 56353 203 1 NC_007795.1 velvet.131 100.0 True CONTIG velvet.131 203 correct 116053 258531 456 142854 NC_007795.1 velvet.140 99.91 True CONTIG velvet.140 142854 correct 554053 554161 109 1 NC_007795.1 velvet.143 99.08 True fake: scaffold gap size wrong estimation (extensive) 550618 554056 7400 3962 NC_007795.1 velvet.143 100.0 True CONTIG velvet.143 7400 correct 1506385 1511046 4667 1 NC_007795.1 velvet.169 98.95 True fake: scaffold gap size wrong estimation (local) 1502423 1502828 7768 7363 NC_007795.1 velvet.169 96.06 True fake: scaffold gap size wrong estimation (local) 1496394 1501853 14324 8866 NC_007795.1 velvet.169 96.7 True relocation, scaffold gap is present, inconsistency = -564282 2059838 2060421 15162 14579 NC_007795.1 velvet.169 95.72 True relocation, scaffold gap is present, inconsistency = -8700 2067879 2068420 15821 15280 NC_007795.1 velvet.169 96.13 True local misassembly 2061920 2062169 22665 22416 NC_007795.1 velvet.169 98.4 True relocation, scaffold gap is present, inconsistency = 108182 1952310 1952599 24093 23804 NC_007795.1 velvet.169 97.59 True local misassembly 1952043 1952200 24384 24227 NC_007795.1 velvet.169 97.47 True relocation, scaffold gap is present, inconsistency = 456413 1493517 1493919 26497 26095 NC_007795.1 velvet.169 97.52 True local misassembly 1488111 1493483 32137 26767 NC_007795.1 velvet.169 97.02 True relocation, scaffold gap is present, inconsistency = -570198 1978473 2043611 111966 46835 NC_007795.1 velvet.169 99.84 True fake: scaffold gap size wrong estimation (local) 1967023 1978269 123363 112132 NC_007795.1 velvet.169 99.85 True relocation, inconsistency = 43615 1906559 1923407 140213 123364 NC_007795.1 velvet.169 99.96 True relocation, scaffold gap is present, inconsistency = 1452171 454244 454373 140228 140357 NC_007795.1 velvet.169 96.15 True local misassembly 454588 492152 140539 178103 NC_007795.1 velvet.169 99.97 True fake: scaffold gap size wrong estimation (local) 492499 495037 178342 180880 NC_007795.1 velvet.169 98.51 True relocation, scaffold gap is present, inconsistency = 1403889 1899022 1899102 181056 180976 NC_007795.1 velvet.169 98.77 True fake: scaffold gap size wrong estimation (local) 1864979 1897208 215085 182856 NC_007795.1 velvet.169 99.98 True fake: scaffold gap size wrong estimation (local) 1844742 1864453 235205 215487 NC_007795.1 velvet.169 99.96 True fake: scaffold gap size wrong estimation (local) 1844391 1844741 236469 236119 NC_007795.1 velvet.169 99.15 True fake: scaffold gap size wrong estimation (local) 1842998 1844214 237696 236480 NC_007795.1 velvet.169 99.84 True CONTIG velvet.169 237696 misassembled 2244434 2264396 1 19961 NC_007795.1 velvet.171 99.95 True CONTIG velvet.171 20588 correct