S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 594666 598576 1 3911 NC_007795.1 scaffold8 100.0 True CONTIG scaffold8 3911 correct 292200 292546 347 1 NC_007795.1 scaffold17 100.0 True fake: scaffold gap size wrong estimation (local) 289707 290898 3372 2179 NC_007795.1 scaffold17 95.25 True relocation, inconsistency = -3648 292200 293004 4527 3723 NC_007795.1 scaffold17 96.77 True fake: scaffold gap size wrong estimation (local) 290006 290338 6969 6637 NC_007795.1 scaffold17 97.3 True CONTIG scaffold17 6969 misassembled 454098 488148 1 34051 NC_007795.1 scaffold20 99.96 True CONTIG scaffold20 34051 correct 1842476 1842677 202 1 NC_007795.1 C2110 100.0 True CONTIG C2110 202 correct 1899746 1899951 206 1 NC_007795.1 C2116 100.0 True CONTIG C2116 206 correct 56150 56354 1 205 NC_007795.1 C2112 100.0 True CONTIG C2112 205 correct 2570878 2571079 1 202 NC_007795.1 C2106 100.0 True CONTIG C2106 202 correct 1461974 1462183 210 1 NC_007795.1 C2118 100.0 True CONTIG C2118 210 correct 1844016 1844245 230 1 NC_007795.1 C2142 100.0 True CONTIG C2142 230 correct 290308 290550 1 243 NC_007795.1 C2162 100.0 True CONTIG C2162 243 correct CONTIG C2164 244 unaligned CONTIG C2160 243 unaligned 392736 392964 229 1 NC_007795.1 C2140 100.0 True CONTIG C2140 229 correct 57806 58043 1 238 NC_007795.1 C2154 100.0 True CONTIG C2154 238 correct 290122 290247 126 1 NC_007795.1 C2168 96.83 True CONTIG C2168 248 correct CONTIG C2192 288 unaligned 1460809 1461096 288 1 NC_007795.1 C2190 100.0 True CONTIG C2190 288 correct CONTIG C2180 264 unaligned 391658 391953 296 1 NC_007795.1 C2198 99.66 True CONTIG C2198 296 correct 293957 294305 349 1 NC_007795.1 C2230 97.71 True CONTIG C2230 349 correct CONTIG C2200 298 unaligned 1841869 1842162 1 294 NC_007795.1 C2196 99.66 True CONTIG C2196 294 correct 56423 56744 322 1 NC_007795.1 C2212 100.0 True CONTIG C2212 322 correct CONTIG C2232 351 unaligned 1842132 1842489 358 1 NC_007795.1 C2242 100.0 True CONTIG C2242 358 correct CONTIG C2216 336 unaligned CONTIG C2234 351 unaligned 942410 942788 1 379 NC_007795.1 C2252 100.0 True CONTIG C2252 379 correct 1842647 1843027 381 1 NC_007795.1 C2256 99.48 True CONTIG C2256 381 correct CONTIG C2236 354 unaligned CONTIG C2248 373 unaligned 290587 290922 1 336 NC_007795.1 scaffold19 96.75 True local misassembly 291593 291694 477 578 NC_007795.1 scaffold19 95.1 True local misassembly 293824 295217 2070 3463 NC_007795.1 scaffold19 98.71 True CONTIG scaffold19 3515 correct CONTIG C2268 406 unaligned 291593 291694 40 141 NC_007795.1 C2258 95.1 True CONTIG C2258 386 correct 390676 391152 1 477 NC_007795.1 C2282 100.0 True CONTIG C2282 477 correct 1820935 1821397 463 1 NC_007795.1 C2278 99.57 True CONTIG C2278 463 correct 1839985 1840527 1 543 NC_007795.1 C2316 99.63 True CONTIG C2316 543 correct 104748 105171 424 1 NC_007795.1 C2270 99.76 True CONTIG C2270 424 correct 400921 401451 531 1 NC_007795.1 C2306 100.0 True CONTIG C2306 531 correct 391278 391674 1 397 NC_007795.1 C2266 100.0 True CONTIG C2266 397 correct 391967 392443 1 477 NC_007795.1 C2284 100.0 True CONTIG C2284 477 correct CONTIG C2320 552 unaligned CONTIG C2336 658 unaligned CONTIG C2314 540 unaligned 1843340 1844009 670 1 NC_007795.1 C2340 100.0 True CONTIG C2340 670 correct CONTIG C2328 627 unaligned CONTIG C2384 837 unaligned 1460069 1460839 771 1 NC_007795.1 C2372 100.0 True CONTIG C2372 771 correct 290868 291575 708 1 NC_007795.1 C2348 100.0 True CONTIG C2348 708 correct CONTIG C2338 660 unaligned 2580620 2581357 1 738 NC_007795.1 C2360 100.0 True CONTIG C2360 738 correct 291593 291694 624 523 NC_007795.1 scaffold21 95.1 True local misassembly 288290 290922 3397 765 NC_007795.1 scaffold21 97.65 True relocation, inconsistency = -3747 291553 292036 3881 3398 NC_007795.1 scaffold21 100.0 True CONTIG scaffold21 3881 misassembled CONTIG C2388 882 unaligned 391127 391265 1 139 NC_007795.1 scaffold18 100.0 True indel: indel (> 5bp) 391278 392696 140 1558 NC_007795.1 scaffold18 99.72 True local misassembly 394063 394968 2931 3836 NC_007795.1 scaffold18 100.0 True CONTIG scaffold18 3836 correct 1841773 1859923 18151 1 NC_007795.1 scaffold15 99.95 True CONTIG scaffold15 18151 correct 392948 393851 904 1 NC_007795.1 C2392 100.0 True CONTIG C2392 904 correct 1838944 1839933 1 990 NC_007795.1 C2406 100.0 True CONTIG C2406 990 correct 2584358 2585273 917 1 NC_007795.1 C2394 99.78 True CONTIG C2394 917 correct CONTIG C2390 902 unaligned 1458717 1459675 959 1 NC_007795.1 C2402 100.0 True CONTIG C2402 959 correct CONTIG C2450 1443 unaligned CONTIG C2422 1153 unaligned 291593 291694 942 841 NC_007795.1 scaffold16 95.1 True local misassembly 290842 290922 1163 1083 NC_007795.1 scaffold16 95.06 True indel: stretch of mismatches 289707 290817 2298 1188 NC_007795.1 scaffold16 95.23 True relocation, inconsistency = -2626 291201 292152 3430 2479 NC_007795.1 scaffold16 99.68 True CONTIG scaffold16 3735 misassembled 2578994 2580649 1656 1 NC_007795.1 C2474 100.0 True CONTIG C2474 1656 correct 399737 400951 1215 1 NC_007795.1 C2426 99.84 True CONTIG C2426 1215 correct CONTIG scaffold11 16209 unaligned 1897227 1898610 1 1384 NC_007795.1 C2444 99.93 True CONTIG C2444 1384 correct CONTIG C2404 982 unaligned 492746 494100 1 1355 NC_007795.1 scaffold14 100.0 True relocation, inconsistency = 1404921 1899022 1899396 1732 1356 NC_007795.1 scaffold14 97.62 True local misassembly 1864932 1898722 35536 1746 NC_007795.1 scaffold14 99.97 True CONTIG scaffold14 35536 misassembled CONTIG C2436 1277 unaligned 1821367 1824526 3160 1 NC_007795.1 C2548 100.0 True CONTIG C2548 3160 correct 493037 494740 1704 1 NC_007795.1 C2476 99.94 True CONTIG C2476 1704 correct 1859900 1863220 3320 1 NC_007795.1 C2558 99.88 True CONTIG C2558 3320 correct 488183 492153 3971 1 NC_007795.1 C2582 99.95 True CONTIG C2582 3971 correct 387115 390662 3548 1 NC_007795.1 C2566 100.0 True CONTIG C2566 3548 correct 2239317 2242350 1 3034 NC_007795.1 C2538 100.0 True CONTIG C2538 3034 correct 294334 297436 3103 1 NC_007795.1 C2544 100.0 True CONTIG C2544 3103 correct 401503 405610 1 4107 NC_007795.1 C2584 99.98 True CONTIG C2584 4107 correct 395149 399316 1 4168 NC_007795.1 C2588 99.98 True CONTIG C2588 4168 correct 938713 942419 3707 1 NC_007795.1 C2614 99.97 True relocation, inconsistency = -925814 1863193 1864526 5041 3708 NC_007795.1 C2614 99.93 True CONTIG C2614 5041 misassembled CONTIG C2482 1815 unaligned 1832828 1838968 6141 1 NC_007795.1 C2678 99.97 True CONTIG C2678 6141 correct CONTIG C2546 3149 unaligned 36973 42699 5727 1 NC_007795.1 C2658 99.97 True CONTIG C2658 5727 correct CONTIG C2556 3281 unaligned 406397 407973 1478 3054 NC_007795.1 scaffold5 99.3 True relocation, inconsistency = -2709 405587 448709 3377 46499 NC_007795.1 scaffold5 99.96 True CONTIG scaffold5 46499 misassembled CONTIG C2702 6735 unaligned CONTIG C2706 6850 unaligned CONTIG C2606 4824 unaligned 293848 387040 93192 1 NC_007795.1 scaffold9 99.96 True CONTIG scaffold9 93229 correct 2128209 2194406 1 66209 NC_007795.1 scaffold7 99.96 True local misassembly 2194558 2201835 66210 73487 NC_007795.1 scaffold7 99.89 True local misassembly 2201611 2238746 73488 110622 NC_007795.1 scaffold7 99.95 True CONTIG scaffold7 110622 correct 554853 594693 39841 1 NC_007795.1 scaffold6 99.96 True fake: scaffold gap size wrong estimation (local) 554053 554587 40401 39867 NC_007795.1 scaffold6 97.38 True relocation, inconsistency = -3666 554053 554548 44067 43572 NC_007795.1 scaffold6 98.39 True relocation, inconsistency = -3894 554852 555158 47162 46856 NC_007795.1 scaffold6 97.07 True local misassembly 553817 554473 48118 47462 NC_007795.1 scaffold6 98.78 True local misassembly 550316 554595 52350 48137 NC_007795.1 scaffold6 97.46 True indel: indel (> 5bp) 498171 550243 104424 52351 NC_007795.1 scaffold6 99.98 True CONTIG scaffold6 104424 misassembled 2073485 2122702 49210 1 NC_007795.1 scaffold1 99.93 True relocation, inconsistency = 566182 1503547 1506424 52965 50089 NC_007795.1 scaffold1 99.51 True relocation, inconsistency = -567225 2069446 2069895 54291 53842 NC_007795.1 scaffold1 98.44 True local misassembly 2067879 2068420 55246 54705 NC_007795.1 scaffold1 95.2 True local misassembly 2061920 2062169 62090 61841 NC_007795.1 scaffold1 98.4 True local misassembly 2059079 2059450 64997 64626 NC_007795.1 scaffold1 97.85 True relocation, inconsistency = 1057 1978387 2043611 144477 79408 NC_007795.1 scaffold1 99.61 True local misassembly 1967023 1978269 155731 144485 NC_007795.1 scaffold1 99.98 True relocation, inconsistency = 43615 1906558 1923407 172582 155732 NC_007795.1 scaffold1 99.96 True CONTIG scaffold1 172582 misassembled 1 34154 46079 11932 NC_007795.1 scaffold3 99.95 True fake: not a misassembly [linear representation of circular genome] 2778901 2821361 88538 46080 NC_007795.1 scaffold3 99.97 True local misassembly 2723772 2778715 143358 88539 NC_007795.1 scaffold3 99.69 True local misassembly 2647814 2723591 219082 143359 NC_007795.1 scaffold3 99.87 True local misassembly 2582082 2647655 284655 219083 NC_007795.1 scaffold3 99.96 True relocation, inconsistency = -3763 2582317 2584969 288184 285531 NC_007795.1 scaffold3 99.36 True CONTIG scaffold3 288184 misassembled 2573020 2577853 4833 1 NC_007795.1 scaffold10 99.73 True relocation, inconsistency = 1768 2502198 2571092 73885 4993 NC_007795.1 scaffold10 99.96 True local misassembly 2399404 2502531 176959 73886 NC_007795.1 scaffold10 99.66 True local misassembly 2378461 2399103 197603 176960 NC_007795.1 scaffold10 99.97 True local misassembly 2378513 2378598 197689 197604 NC_007795.1 scaffold10 98.84 True local misassembly 2335903 2378483 240415 197846 NC_007795.1 scaffold10 99.94 True local misassembly 2265871 2335731 310275 240416 NC_007795.1 scaffold10 99.96 True relocation, inconsistency = 915653 1349613 1350155 310338 310880 NC_007795.1 scaffold10 99.63 True relocation, inconsistency = 894277 2244433 2265131 331598 310881 NC_007795.1 scaffold10 99.82 True CONTIG scaffold10 331598 misassembled 860540 938632 78092 1 NC_007795.1 scaffold13 99.97 True fake: scaffold gap size wrong estimation (local) 815656 860425 122991 78222 NC_007795.1 scaffold13 99.98 True relocation, inconsistency = -13956 794945 815672 157810 136931 NC_007795.1 scaffold13 98.88 True local misassembly 775678 795154 177473 157811 NC_007795.1 scaffold13 98.38 True local misassembly 768642 775705 184627 177564 NC_007795.1 scaffold13 99.9 True local misassembly 758678 768279 194174 184628 NC_007795.1 scaffold13 99.41 True relocation, inconsistency = 1199 746490 757478 205163 194175 NC_007795.1 scaffold13 100.0 True local misassembly 720158 746494 231955 205642 NC_007795.1 scaffold13 99.54 True local misassembly 624056 720071 328434 232435 NC_007795.1 scaffold13 99.96 True local misassembly 613168 623789 339056 328435 NC_007795.1 scaffold13 99.98 True relocation, inconsistency = -13357 604931 613170 360650 352411 NC_007795.1 scaffold13 100.0 True local misassembly 604020 604826 361457 360651 NC_007795.1 scaffold13 100.0 True local misassembly 598607 603887 366737 361458 NC_007795.1 scaffold13 99.98 True CONTIG scaffold13 366737 misassembled 104517 289494 184796 1 NC_007795.1 scaffold4 99.86 True local misassembly 74205 104747 215341 184797 NC_007795.1 scaffold4 99.96 True local misassembly 57535 74470 232205 215342 NC_007795.1 scaffold4 99.49 True local misassembly 55648 56392 235067 234323 NC_007795.1 scaffold4 100.0 True local misassembly 42932 55896 248030 235068 NC_007795.1 scaffold4 99.93 True local misassembly 42802 43103 248389 248088 NC_007795.1 scaffold4 99.01 True relocation, inconsistency = 6019 36672 36782 248500 248390 NC_007795.1 scaffold4 100.0 True local misassembly 34152 36821 251172 248501 NC_007795.1 scaffold4 99.7 True CONTIG scaffold4 270753 misassembled 1832351 1832848 498 1 NC_007795.1 scaffold2 100.0 True local misassembly 1814827 1832615 18287 499 NC_007795.1 scaffold2 99.96 True fake: scaffold gap size wrong estimation (local) 1806521 1814155 26536 18776 NC_007795.1 scaffold2 98.23 True local misassembly 1799728 1807052 33763 26537 NC_007795.1 scaffold2 98.62 True indel: stretch of mismatches 1795932 1799727 37562 33764 NC_007795.1 scaffold2 99.87 True local misassembly 1776668 1795811 56914 37751 NC_007795.1 scaffold2 99.62 True fake: scaffold gap size wrong estimation (local) 1760881 1776372 72628 57137 NC_007795.1 scaffold2 99.98 True local misassembly 1706963 1760721 126348 72629 NC_007795.1 scaffold2 99.87 True relocation, inconsistency = 356536 1349613 1350426 127162 126349 NC_007795.1 scaffold2 99.76 True relocation, inconsistency = -356314 1510582 1705864 322507 127225 NC_007795.1 scaffold2 99.96 True local misassembly 1506385 1511399 327701 322688 NC_007795.1 scaffold2 98.9 True local misassembly 1502423 1502828 330850 330445 NC_007795.1 scaffold2 96.06 True relocation, inconsistency = -458400 1960276 1960789 331400 330884 NC_007795.1 scaffold2 95.94 True relocation, inconsistency = 457837 1496394 1501853 337444 331986 NC_007795.1 scaffold2 96.7 True relocation, inconsistency = -564277 2059838 2060421 338277 337694 NC_007795.1 scaffold2 95.72 True local misassembly 2059838 2060421 339073 338490 NC_007795.1 scaffold2 95.72 True relocation, inconsistency = 564889 1493517 1493923 340505 340099 NC_007795.1 scaffold2 97.3 True local misassembly 1464425 1493483 369836 340775 NC_007795.1 scaffold2 97.63 True local misassembly 1461299 1462574 373658 372384 NC_007795.1 scaffold2 99.92 True CONTIG scaffold2 373658 misassembled 942779 978214 1 35424 NC_007795.1 scaffold12 99.93 True local misassembly 978309 1074452 35428 131564 NC_007795.1 scaffold12 99.85 True local misassembly 1074622 1111259 131565 168195 NC_007795.1 scaffold12 99.95 True local misassembly 1111477 1362948 168196 419674 NC_007795.1 scaffold12 99.83 True relocation, inconsistency = 457789 1820741 1821357 420291 419675 NC_007795.1 scaffold12 99.84 True relocation, inconsistency = 445294 1363070 1375446 420292 432668 NC_007795.1 scaffold12 99.96 True indel: stretch of mismatches 1375447 1378060 432669 435392 NC_007795.1 scaffold12 97.57 True local misassembly 1378292 1381574 435393 438675 NC_007795.1 scaffold12 99.54 True local misassembly 1381953 1384910 438676 441633 NC_007795.1 scaffold12 99.97 True local misassembly 1384897 1386881 441713 443697 NC_007795.1 scaffold12 100.0 True relocation, inconsistency = -3174 1386868 1458747 446858 518710 NC_007795.1 scaffold12 99.93 True CONTIG scaffold12 518710 misassembled