S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 2572521 2572891 1 371 NC_007795.1 scf7180000001028 97.57 True CONTIG scf7180000001028 371 correct 2622900 2623799 900 1 NC_007795.1 scf7180000001029 100.0 True relocation, inconsistency = 2454272 168249 168627 1279 901 NC_007795.1 scf7180000001029 99.32 True CONTIG scf7180000001029 1279 misassembled 494666 495239 574 1 NC_007795.1 scf7180000001030 99.13 True CONTIG scf7180000001030 574 correct 1844391 1845096 1 706 NC_007795.1 scf7180000001031 99.29 True CONTIG scf7180000001031 706 correct 1904734 1905129 399 1 NC_007795.1 scf7180000001032 98.5 True CONTIG scf7180000001032 399 correct CONTIG scf7180000001033 353 unaligned 1898929 1899470 1 542 NC_007795.1 scf7180000001034 99.82 True CONTIG scf7180000001034 542 correct 2571963 2572507 545 1 NC_007795.1 scf7180000001035 99.45 True CONTIG scf7180000001035 545 correct 1899876 1900252 377 1 NC_007795.1 scf7180000001036 100.0 True CONTIG scf7180000001036 377 correct 2811180 2812251 1072 1 NC_007795.1 scf7180000001037 99.91 True CONTIG scf7180000001037 1072 correct 2779028 2780470 1443 1 NC_007795.1 scf7180000001038 100.0 True CONTIG scf7180000001038 1443 correct 1837577 1838718 1 1141 NC_007795.1 scf7180000001039 99.91 True CONTIG scf7180000001039 1141 correct 405587 453842 48211 1 NC_007795.1 scf7180000001040 99.83 True relocation, inconsistency = -5112 406394 406492 52516 52418 NC_007795.1 scf7180000001040 96.97 True local misassembly 405580 405766 53342 53156 NC_007795.1 scf7180000001040 95.72 True local misassembly 400585 406208 59152 53530 NC_007795.1 scf7180000001040 98.49 True CONTIG scf7180000001040 59152 misassembled 494727 498122 3334 1 NC_007795.1 scf7180000001041 98.62 True relocation, inconsistency = 1406735 1904858 1923407 3335 21885 NC_007795.1 scf7180000001041 99.96 True relocation, inconsistency = 43615 1967023 1978287 21886 33038 NC_007795.1 scf7180000001041 98.99 True fake: scaffold gap size wrong estimation (local) 1978457 1987662 33314 42519 NC_007795.1 scf7180000001041 99.99 True fake: scaffold gap size wrong estimation (local) 1987769 2043611 42647 98665 NC_007795.1 scf7180000001041 99.13 True relocation, inconsistency = 1057 2059079 2059450 113076 113447 NC_007795.1 scf7180000001041 97.85 True local misassembly 2061920 2062169 115983 116232 NC_007795.1 scf7180000001041 98.4 True local misassembly 2067879 2068420 122827 123368 NC_007795.1 scf7180000001041 95.2 True local misassembly 2069446 2069895 123782 124231 NC_007795.1 scf7180000001041 98.44 True relocation, inconsistency = -567225 1503547 1506424 125108 127984 NC_007795.1 scf7180000001041 99.51 True relocation, inconsistency = 566182 2073485 2079817 128863 135195 NC_007795.1 scf7180000001041 99.79 True relocation, inconsistency = 724591 1347209 1348893 136880 135196 NC_007795.1 scf7180000001041 99.72 True relocation, scaffold gap is present, inconsistency = 730800 2079718 2099433 136905 156644 NC_007795.1 scf7180000001041 99.85 True fake: scaffold gap size wrong estimation (local) 2100133 2122701 157245 179832 NC_007795.1 scf7180000001041 99.96 True CONTIG scf7180000001041 179832 misassembled 1841869 1844498 1 2630 NC_007795.1 scf7180000001042 100.0 True fake: scaffold gap size wrong estimation (local) 1845095 1864785 3173 22895 NC_007795.1 scf7180000001042 99.85 True fake: scaffold gap size wrong estimation (local) 1864793 1897390 23167 55766 NC_007795.1 scf7180000001042 99.96 True fake: scaffold gap size wrong estimation (local) 1898658 1898722 57269 57333 NC_007795.1 scf7180000001042 100.0 True local misassembly 1898844 1898916 57334 57406 NC_007795.1 scf7180000001042 100.0 True CONTIG scf7180000001042 57406 correct 2128071 2149186 90 21216 NC_007795.1 scf7180000001043 99.92 True fake: scaffold gap size wrong estimation (local) 2149770 2239065 21769 111150 NC_007795.1 scf7180000001043 99.89 True relocation, scaffold gap is present, inconsistency = 1656381 492707 493066 111832 111473 NC_007795.1 scf7180000001043 99.72 True indel: indel (> 5bp) 492613 492706 111939 111846 NC_007795.1 scf7180000001043 98.94 True indel: indel (<= 5bp) 492530 492611 112025 111944 NC_007795.1 scf7180000001043 98.78 True local misassembly 492189 492420 112423 112192 NC_007795.1 scf7180000001043 99.14 True fake: scaffold gap size wrong estimation (local) 454349 492242 150726 112833 NC_007795.1 scf7180000001043 99.97 True local misassembly 448679 453812 155799 150727 NC_007795.1 scf7180000001043 98.38 True CONTIG scf7180000001043 155799 misassembled 497358 498122 765 1 NC_007795.1 scf7180000001044 98.64 True relocation, inconsistency = 1741878 2240001 2335779 766 96410 NC_007795.1 scf7180000001044 99.73 True local misassembly 2335895 2399103 96411 159632 NC_007795.1 scf7180000001044 99.93 True local misassembly 2399404 2502600 159633 262834 NC_007795.1 scf7180000001044 99.93 True relocation, inconsistency = -4201 2498400 2499235 262835 263670 NC_007795.1 scf7180000001044 99.89 True fake: scaffold gap size wrong estimation (extensive) 2502555 2527527 263691 288719 NC_007795.1 scf7180000001044 99.91 True fake: scaffold gap size wrong estimation (local) 2527650 2570715 288850 331914 NC_007795.1 scf7180000001044 99.97 True relocation, inconsistency = 2688 2573404 2674086 331915 432432 NC_007795.1 scf7180000001044 99.77 True fake: scaffold gap size wrong estimation (local) 2674045 2723264 432623 481842 NC_007795.1 scf7180000001044 99.97 True fake: scaffold gap size wrong estimation (local) 2723689 2811463 482426 570097 NC_007795.1 scf7180000001044 99.77 True local misassembly 2812450 2821361 570098 579014 NC_007795.1 scf7180000001044 99.68 True fake: not a misassembly [linear representation of circular genome] 1 24228 579015 603236 NC_007795.1 scf7180000001044 99.94 True fake: scaffold gap size wrong estimation (local) 24239 34154 603343 613258 NC_007795.1 scf7180000001044 99.98 True relocation, scaffold gap is present, inconsistency = -54244 34152 55677 667500 689025 NC_007795.1 scf7180000001044 99.88 True fake: scaffold gap size wrong estimation (extensive) 56718 115501 689046 747827 NC_007795.1 scf7180000001044 99.63 True fake: scaffold gap size wrong estimation (local) 115877 258541 748073 890686 NC_007795.1 scf7180000001044 99.91 True fake: scaffold gap size wrong estimation (local) 258668 292152 890833 924362 NC_007795.1 scf7180000001044 99.86 True relocation, inconsistency = -3645 290122 290617 925977 926472 NC_007795.1 scf7180000001044 99.19 True fake: scaffold gap size wrong estimation (local) 293355 401002 928227 1035978 NC_007795.1 scf7180000001044 99.78 True relocation, inconsistency = 1413037 1814040 1840445 1062397 1035979 NC_007795.1 scf7180000001044 99.73 True fake: scaffold gap size wrong estimation (local) 1796177 1813894 1080183 1062418 NC_007795.1 scf7180000001044 99.89 True fake: scaffold gap size wrong estimation (local) 1760881 1795901 1115395 1080400 NC_007795.1 scf7180000001044 98.98 True local misassembly 1597827 1760721 1278265 1115396 NC_007795.1 scf7180000001044 99.94 True fake: scaffold gap size wrong estimation (local) 1506385 1597636 1369729 1278463 NC_007795.1 scf7180000001044 99.91 True local misassembly 1502423 1502828 1372878 1372473 NC_007795.1 scf7180000001044 96.06 True relocation, inconsistency = -458400 1960276 1960789 1373428 1372912 NC_007795.1 scf7180000001044 95.94 True relocation, inconsistency = 457837 1496394 1501853 1379472 1374014 NC_007795.1 scf7180000001044 96.7 True relocation, inconsistency = -564277 2059838 2060421 1380305 1379722 NC_007795.1 scf7180000001044 95.72 True relocation, inconsistency = 564889 1493517 1493923 1381737 1381331 NC_007795.1 scf7180000001044 97.3 True local misassembly 1464425 1493483 1411069 1382007 NC_007795.1 scf7180000001044 97.63 True fake: scaffold gap size wrong estimation (local) 1461031 1462574 1415176 1413646 NC_007795.1 scf7180000001044 99.16 True fake: scaffold gap size wrong estimation (local) 1386868 1460885 1489323 1415290 NC_007795.1 scf7180000001044 99.97 True relocation, inconsistency = -3174 1384897 1386881 1494468 1492484 NC_007795.1 scf7180000001044 100.0 True local misassembly 1381953 1384910 1497505 1494548 NC_007795.1 scf7180000001044 99.97 True local misassembly 1378752 1381574 1500328 1497506 NC_007795.1 scf7180000001044 99.54 True local misassembly 1363070 1378520 1515779 1500329 NC_007795.1 scf7180000001044 99.82 True relocation, inconsistency = 442220 1820741 1821480 1515780 1516518 NC_007795.1 scf7180000001044 98.39 True relocation, inconsistency = 457668 1349600 1363072 1529990 1516519 NC_007795.1 scf7180000001044 99.96 True fake: scaffold gap size wrong estimation (local) 1349087 1349706 1530818 1530199 NC_007795.1 scf7180000001044 99.19 True fake: scaffold gap size wrong estimation (local) 1333096 1348961 1546872 1531007 NC_007795.1 scf7180000001044 99.97 True fake: scaffold gap size wrong estimation (local) 1074742 1332679 1805335 1547267 NC_007795.1 scf7180000001044 99.93 True relocation, inconsistency = 1446188 2778868 2779959 1805336 1806427 NC_007795.1 scf7180000001044 100.0 True relocation, scaffold gap is present, inconsistency = 1704119 1074622 1074728 1806554 1806448 NC_007795.1 scf7180000001044 99.4 True local misassembly 860556 1074452 2020381 1806555 NC_007795.1 scf7180000001044 99.94 True local misassembly 815656 860385 2065173 2020382 NC_007795.1 scf7180000001044 99.96 True relocation, inconsistency = -13956 795086 815672 2099777 2079113 NC_007795.1 scf7180000001044 99.55 True local misassembly 775713 794869 2118934 2099778 NC_007795.1 scf7180000001044 99.67 True fake: scaffold gap size wrong estimation (local) 768617 775737 2126286 2119166 NC_007795.1 scf7180000001044 99.92 True fake: scaffold gap size wrong estimation (local) 762938 768209 2131850 2126579 NC_007795.1 scf7180000001044 99.98 True fake: scaffold gap size wrong estimation (local) 758678 762805 2136112 2131985 NC_007795.1 scf7180000001044 99.81 True relocation, inconsistency = 1199 746490 757478 2147101 2136113 NC_007795.1 scf7180000001044 100.0 True local misassembly 624189 746494 2269880 2147580 NC_007795.1 scf7180000001044 99.93 True local misassembly 613168 623789 2280502 2269881 NC_007795.1 scf7180000001044 99.97 True relocation, inconsistency = -13357 554876 613170 2352093 2293857 NC_007795.1 scf7180000001044 99.85 True fake: scaffold gap size wrong estimation (local) 554053 554394 2352866 2352525 NC_007795.1 scf7180000001044 95.91 True fake: scaffold gap size wrong estimation (extensive) 550382 554363 2359831 2355922 NC_007795.1 scf7180000001044 97.97 True fake: scaffold gap size wrong estimation (local) 498204 549942 2411914 2360175 NC_007795.1 scf7180000001044 99.98 True CONTIG scf7180000001044 2411914 misassembled