S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 497358 498103 746 1 NC_007795.1 scaffold_0 98.63 True relocation, inconsistency = 1741897 2240001 2265384 747 25968 NC_007795.1 scaffold_0 99.18 True fake: scaffold gap size wrong estimation (local) 2265854 2335765 26272 96179 NC_007795.1 scaffold_0 99.97 True local misassembly 2335881 2399103 96180 159408 NC_007795.1 scaffold_0 99.94 True local misassembly 2399404 2570830 159409 330768 NC_007795.1 scaffold_0 99.93 True fake: scaffold gap size wrong estimation (extensive) 2573289 2579448 331591 337707 NC_007795.1 scaffold_0 99.42 True indel: stretch of mismatches 2579449 2723551 337708 481642 NC_007795.1 scaffold_0 99.85 True fake: scaffold gap size wrong estimation (local) 2723755 2810785 481890 568831 NC_007795.1 scaffold_0 99.88 True fake: scaffold gap size wrong estimation (local) 2812521 2821361 570422 579261 NC_007795.1 scaffold_0 99.98 True fake: not a misassembly [linear representation of circular genome] 1 34154 579262 613409 NC_007795.1 scaffold_0 99.95 True relocation, scaffold gap is present, inconsistency = -54210 34152 56831 667617 690343 NC_007795.1 scaffold_0 99.74 True fake: scaffold gap size wrong estimation (local) 58089 258531 692269 892515 NC_007795.1 scaffold_0 99.87 True fake: scaffold gap size wrong estimation (local) 258679 289558 892571 923450 NC_007795.1 scaffold_0 99.97 True fake: scaffold gap size wrong estimation (local) 290728 292152 924524 925948 NC_007795.1 scaffold_0 99.79 True relocation, inconsistency = -2626 289707 289828 926129 926250 NC_007795.1 scaffold_0 98.36 True fake: scaffold gap size wrong estimation (local) 289811 289905 926925 927019 NC_007795.1 scaffold_0 100.0 True local misassembly 290122 290614 927749 928241 NC_007795.1 scaffold_0 99.19 True fake: scaffold gap size wrong estimation (local) 292111 292294 929742 929925 NC_007795.1 scaffold_0 95.11 True fake: scaffold gap size wrong estimation (local) 293848 394973 930822 1032126 NC_007795.1 scaffold_0 99.78 True indel: stretch of mismatches 394974 405720 1032127 1042872 NC_007795.1 scaffold_0 99.28 True fake: scaffold gap size wrong estimation (extensive) 405587 448807 1048510 1091731 NC_007795.1 scaffold_0 99.96 True CONTIG scaffold_0 1091731 misassembled 453924 492230 1 38307 NC_007795.1 scaffold_1 99.96 True CONTIG scaffold_1 38307 correct 2128190 2238373 1 110168 NC_007795.1 scaffold_5 99.83 True CONTIG scaffold_5 110168 correct 289804 289913 4 113 NC_007795.1 scaffold_9 98.18 True unknown 289485 289569 707 791 NC_007795.1 scaffold_9 96.47 True unknown 289575 289844 792 1061 NC_007795.1 scaffold_9 95.93 True unknown CONTIG scaffold_9 1061 mis_unaligned CONTIG scaffold_10 3336 unaligned CONTIG scaffold_11 8234 unaligned CONTIG scaffold_12 1376 unaligned CONTIG scaffold_13 3436 unaligned CONTIG scaffold_14 6712 unaligned 1904889 1923397 1 18511 NC_007795.1 scaffold_15 99.95 True relocation, inconsistency = 43615 1967013 2043611 18512 95133 NC_007795.1 scaffold_15 99.69 True relocation, inconsistency = 1057 2059079 2059450 109544 109915 NC_007795.1 scaffold_15 97.85 True local misassembly 2061920 2062169 112451 112700 NC_007795.1 scaffold_15 98.4 True local misassembly 2067879 2068420 119295 119836 NC_007795.1 scaffold_15 95.2 True local misassembly 2069446 2069895 120216 120665 NC_007795.1 scaffold_15 98.44 True relocation, inconsistency = -567225 1503547 1506424 121542 124418 NC_007795.1 scaffold_15 99.51 True relocation, inconsistency = 566182 2073485 2126165 125297 177846 NC_007795.1 scaffold_15 99.69 True relocation, inconsistency = 1578718 493052 494766 179561 177847 NC_007795.1 scaffold_15 98.62 True CONTIG scaffold_15 179561 misassembled 1844680 1898528 53875 1 NC_007795.1 scaffold_16 99.71 True fake: scaffold gap size wrong estimation (local) 1842933 1844485 55512 53960 NC_007795.1 scaffold_16 100.0 True fake: scaffold gap size wrong estimation (local) 1776850 1842741 121425 55525 NC_007795.1 scaffold_16 99.84 True fake: scaffold gap size wrong estimation (local) 1760881 1776406 137171 121646 NC_007795.1 scaffold_16 99.98 True local misassembly 1506385 1760721 391521 137172 NC_007795.1 scaffold_16 99.9 True local misassembly 1502423 1502828 394636 394231 NC_007795.1 scaffold_16 96.06 True relocation, inconsistency = -458400 1960276 1960789 395186 394670 NC_007795.1 scaffold_16 95.94 True relocation, inconsistency = 457837 1496394 1501853 401230 395772 NC_007795.1 scaffold_16 96.7 True relocation, inconsistency = -564277 2059838 2060421 402063 401480 NC_007795.1 scaffold_16 95.72 True relocation, inconsistency = 564889 1493517 1493923 403495 403089 NC_007795.1 scaffold_16 97.3 True local misassembly 1464425 1493483 432826 403765 NC_007795.1 scaffold_16 97.63 True local misassembly 1386868 1462574 511135 435374 NC_007795.1 scaffold_16 99.87 True relocation, inconsistency = -3174 1384897 1386881 516280 514296 NC_007795.1 scaffold_16 100.0 True local misassembly 1381953 1384910 519317 516360 NC_007795.1 scaffold_16 99.97 True local misassembly 1378752 1381574 522140 519318 NC_007795.1 scaffold_16 99.54 True local misassembly 1363070 1378520 537591 522141 NC_007795.1 scaffold_16 99.84 True fake: scaffold gap size wrong estimation (local) 1248954 1362963 652226 538269 NC_007795.1 scaffold_16 99.86 True local misassembly 1074562 1248845 826537 652228 NC_007795.1 scaffold_16 99.94 True local misassembly 1004010 1074392 896802 826538 NC_007795.1 scaffold_16 99.81 True indel: indel (<= 5bp) 815656 1004008 1085142 896803 NC_007795.1 scaffold_16 99.97 True relocation, inconsistency = -13956 775678 815672 1139064 1099082 NC_007795.1 scaffold_16 99.82 True local misassembly 758674 775705 1155903 1139155 NC_007795.1 scaffold_16 98.27 True relocation, inconsistency = 1199 746490 757474 1166888 1155904 NC_007795.1 scaffold_16 100.0 True local misassembly 624189 746494 1289608 1167367 NC_007795.1 scaffold_16 99.9 True local misassembly 613168 623789 1300230 1289609 NC_007795.1 scaffold_16 99.99 True relocation, inconsistency = -13357 589913 613170 1336746 1313585 NC_007795.1 scaffold_16 99.57 True local misassembly 554920 590007 1371835 1336748 NC_007795.1 scaffold_16 99.96 True fake: scaffold gap size wrong estimation (local) 554053 554616 1372563 1372000 NC_007795.1 scaffold_16 97.52 True relocation, inconsistency = -3894 495008 555158 1435559 1375352 NC_007795.1 scaffold_16 99.73 True CONTIG scaffold_16 1435559 misassembled 1842647 1842934 288 1 NC_007795.1 scaffold_18 100.0 True CONTIG scaffold_18 288 correct