S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group CONTIG scf7180000171378 477 unaligned CONTIG scf7180000171379 306 unaligned CONTIG scf7180000171380 370 unaligned 87232001 87233174 1164 1 NC_000014.9 scf7180000171381 99.06 True CONTIG scf7180000171381 1164 correct CONTIG scf7180000171382 430 unaligned CONTIG scf7180000171383 305 unaligned CONTIG scf7180000171384 334 unaligned CONTIG scf7180000171385 359 unaligned 104156444 104157698 1255 1 NC_000014.9 scf7180000171386 100.0 True CONTIG scf7180000171386 1255 correct CONTIG scf7180000171387 302 unaligned CONTIG scf7180000171388 453 unaligned 51489292 51490858 1 1579 NC_000014.9 scf7180000171389 99.24 True CONTIG scf7180000171389 1579 correct CONTIG scf7180000171390 462 unaligned 101498827 101499876 1 1012 NC_000014.9 scf7180000171391 96.29 True CONTIG scf7180000171391 1012 correct CONTIG scf7180000171392 982 unaligned CONTIG scf7180000171393 456 unaligned CONTIG scf7180000171394 560 unaligned CONTIG scf7180000171396 574 unaligned CONTIG scf7180000171397 358 unaligned CONTIG scf7180000171398 489 unaligned CONTIG scf7180000171399 314 unaligned 88647699 88648430 1 732 NC_000014.9 scf7180000171400 100.0 True CONTIG scf7180000171400 794 correct 105664583 105665246 1 664 NC_000014.9 scf7180000171401 99.85 True CONTIG scf7180000171401 675 correct CONTIG scf7180000171402 459 unaligned CONTIG scf7180000171403 427 unaligned CONTIG scf7180000171404 373 unaligned CONTIG scf7180000171405 352 unaligned 39630978 39631554 1 577 NC_000014.9 scf7180000171406 100.0 True CONTIG scf7180000171406 699 correct 106662048 106662557 1 510 NC_000014.9 scf7180000171407 99.02 True CONTIG scf7180000171407 824 correct CONTIG scf7180000171408 450 unaligned CONTIG scf7180000171409 314 unaligned CONTIG scf7180000171410 359 unaligned 78570382 78571820 1439 1 NC_000014.9 scf7180000171411 100.0 True CONTIG scf7180000171411 1607 correct CONTIG scf7180000171412 342 unaligned CONTIG scf7180000171413 396 unaligned 20116338 20117882 122 1666 NC_000014.9 scf7180000171415 100.0 True CONTIG scf7180000171415 1666 correct CONTIG scf7180000171416 317 unaligned CONTIG scf7180000171417 598 unaligned 32735230 32737614 1 2378 NC_000014.9 scf7180000171418 99.71 True CONTIG scf7180000171418 2378 correct 26028046 26029076 1031 1 NC_000014.9 scf7180000171419 99.9 True CONTIG scf7180000171419 1031 correct 105581395 105582083 1 689 NC_000014.9 scf7180000171420 99.42 True CONTIG scf7180000171420 689 correct 70331243 70331742 10 509 NC_000014.9 scf7180000171421 99.6 True CONTIG scf7180000171421 539 correct CONTIG scf7180000171422 584 unaligned 44692297 44693768 1 1472 NC_000014.9 scf7180000171423 99.46 True CONTIG scf7180000171423 1472 correct 78299272 78300470 1199 1 NC_000014.9 scf7180000171424 100.0 True CONTIG scf7180000171424 1199 correct 96728348 96729576 1213 1 NC_000014.9 scf7180000171425 98.62 True CONTIG scf7180000171425 1213 correct CONTIG scf7180000171426 301 unaligned 100945617 100947203 1581 1 NC_000014.9 scf7180000171427 99.56 True CONTIG scf7180000171427 1581 correct CONTIG scf7180000171428 497 unaligned 100693511 100695038 1502 1 NC_000014.9 scf7180000171429 98.23 True CONTIG scf7180000171429 1502 correct CONTIG scf7180000171430 366 unaligned CONTIG scf7180000171431 303 unaligned CONTIG scf7180000171433 344 unaligned 69892929 69894114 1 1186 NC_000014.9 scf7180000171434 99.92 True CONTIG scf7180000171434 1221 correct CONTIG scf7180000171435 336 unaligned CONTIG scf7180000171436 388 unaligned CONTIG scf7180000171437 419 unaligned CONTIG scf7180000171438 317 unaligned 30528498 30530054 1557 1 NC_000014.9 scf7180000171439 99.94 True CONTIG scf7180000171439 1557 correct 93813553 93814324 212 983 NC_000014.9 scf7180000171440 99.87 True CONTIG scf7180000171440 983 correct 47440004 47441040 1 1027 NC_000014.9 scf7180000171441 99.04 True CONTIG scf7180000171441 1027 correct CONTIG scf7180000171442 316 unaligned CONTIG scf7180000171443 320 unaligned CONTIG scf7180000171444 341 unaligned 53662640 53663954 1315 1 NC_000014.9 scf7180000171445 100.0 True CONTIG scf7180000171445 1442 correct CONTIG scf7180000171446 790 unaligned CONTIG scf7180000171447 340 unaligned CONTIG scf7180000171448 450 unaligned 97895398 97895977 566 1 NC_000014.9 scf7180000171449 96.06 True CONTIG scf7180000171449 566 correct CONTIG scf7180000171450 355 unaligned 62288645 62290144 30 1526 NC_000014.9 scf7180000171451 99.53 True CONTIG scf7180000171451 1526 correct CONTIG scf7180000171453 333 unaligned CONTIG scf7180000171454 394 unaligned 38210284 38210874 1 615 NC_000014.9 scf7180000171455 96.1 True CONTIG scf7180000171455 615 correct 65819250 65820612 1363 1 NC_000014.9 scf7180000171456 100.0 True CONTIG scf7180000171456 1556 correct CONTIG scf7180000171457 405 unaligned CONTIG scf7180000171458 558 unaligned CONTIG scf7180000171459 361 unaligned CONTIG scf7180000171460 445 unaligned 88787578 88788808 1 1231 NC_000014.9 scf7180000171461 100.0 True CONTIG scf7180000171461 1319 correct CONTIG scf7180000171462 485 unaligned 61197715 61198366 642 1 NC_000014.9 scf7180000171463 98.47 True CONTIG scf7180000171463 642 correct 103221407 103222346 942 3 NC_000014.9 scf7180000171464 99.57 True CONTIG scf7180000171464 975 correct CONTIG scf7180000171465 434 unaligned CONTIG scf7180000171466 357 unaligned 105665928 105666532 644 40 NC_000014.9 scf7180000171467 100.0 True CONTIG scf7180000171467 644 correct CONTIG scf7180000171468 527 unaligned CONTIG scf7180000171469 314 unaligned 42221581 42223252 1 1664 NC_000014.9 scf7180000171470 99.52 True CONTIG scf7180000171470 1664 correct CONTIG scf7180000171471 439 unaligned 92408115 92409023 921 1 NC_000014.9 scf7180000171472 98.7 True CONTIG scf7180000171472 921 correct CONTIG scf7180000171473 342 unaligned 66136859 66137950 1 1092 NC_000014.9 scf7180000171474 100.0 True CONTIG scf7180000171474 1092 correct 102583127 102583880 1 754 NC_000014.9 scf7180000171475 99.6 True CONTIG scf7180000171475 829 correct CONTIG scf7180000171476 559 unaligned 101598806 101600570 1694 1 NC_000014.9 scf7180000171477 95.98 True CONTIG scf7180000171477 1694 correct 25236553 25237136 1 584 NC_000014.9 scf7180000171478 100.0 True CONTIG scf7180000171478 672 correct CONTIG scf7180000171479 356 unaligned CONTIG scf7180000171480 330 unaligned 63398243 63398914 12 683 NC_000014.9 scf7180000171481 100.0 True relocation, inconsistency = 23964224 39433470 39434005 1232 697 NC_000014.9 scf7180000171481 100.0 True CONTIG scf7180000171481 1232 misassembled 61991339 61992376 1 1042 NC_000014.9 scf7180000171482 99.62 True CONTIG scf7180000171482 1042 correct 80060479 80061123 206 850 NC_000014.9 scf7180000171483 100.0 True CONTIG scf7180000171483 850 correct 47652793 47654504 1703 1 NC_000014.9 scf7180000171484 99.47 True CONTIG scf7180000171484 1703 correct 54303157 54304131 1 975 NC_000014.9 scf7180000171486 100.0 True relocation, inconsistency = 50816467 105120601 105121670 978 2047 NC_000014.9 scf7180000171486 99.72 True CONTIG scf7180000171486 2047 misassembled 88580389 88581306 922 1 NC_000014.9 scf7180000171487 99.57 True CONTIG scf7180000171487 979 correct 21685733 21686416 684 1 NC_000014.9 scf7180000171488 99.71 True CONTIG scf7180000171488 684 correct 70509713 70510333 621 1 NC_000014.9 scf7180000171489 100.0 True CONTIG scf7180000171489 1067 correct 66799957 66800752 796 1 NC_000014.9 scf7180000171490 100.0 True CONTIG scf7180000171490 802 correct CONTIG scf7180000171491 426 unaligned CONTIG scf7180000171492 415 unaligned CONTIG scf7180000171493 428 unaligned CONTIG scf7180000171494 333 unaligned CONTIG scf7180000171495 408 unaligned CONTIG scf7180000171496 332 unaligned 103547422 103547942 1 521 NC_000014.9 scf7180000171497 100.0 True CONTIG scf7180000171497 557 correct CONTIG scf7180000171498 309 unaligned CONTIG scf7180000171499 340 unaligned CONTIG scf7180000171500 481 unaligned CONTIG scf7180000171501 350 unaligned CONTIG scf7180000171502 580 unaligned 25499124 25501454 1 2337 NC_000014.9 scf7180000171503 99.57 True CONTIG scf7180000171503 2337 correct 97310540 97311623 105 1188 NC_000014.9 scf7180000171504 100.0 True CONTIG scf7180000171504 1188 correct 87603480 87604594 1376 262 NC_000014.9 scf7180000171505 99.82 True CONTIG scf7180000171505 1376 correct 28934077 28935240 1164 1 NC_000014.9 scf7180000171506 100.0 True CONTIG scf7180000171506 1263 correct CONTIG scf7180000171507 643 unaligned 46462772 46464070 1299 1 NC_000014.9 scf7180000171508 99.85 True CONTIG scf7180000171508 1605 correct 83941092 83941793 1 702 NC_000014.9 scf7180000171509 100.0 True CONTIG scf7180000171509 797 correct CONTIG scf7180000171510 411 unaligned 85104114 85104888 1 785 NC_000014.9 scf7180000171511 98.73 True CONTIG scf7180000171511 785 correct 104106255 104106841 587 1 NC_000014.9 scf7180000171512 99.83 True CONTIG scf7180000171512 626 correct 99525695 99527217 1452 1 NC_000014.9 scf7180000171513 95.21 True CONTIG scf7180000171513 1452 correct CONTIG scf7180000171514 301 unaligned 43316006 43316506 1 501 NC_000014.9 scf7180000171515 100.0 True CONTIG scf7180000171515 648 correct CONTIG scf7180000171516 501 unaligned CONTIG scf7180000171517 480 unaligned CONTIG scf7180000171518 387 unaligned 56306618 56308286 1 1669 NC_000014.9 scf7180000171519 100.0 True CONTIG scf7180000171519 1669 correct CONTIG scf7180000171520 311 unaligned CONTIG scf7180000171521 313 unaligned 62885759 62886498 742 1 NC_000014.9 scf7180000171522 99.73 True CONTIG scf7180000171522 742 correct 60839430 60840009 580 1 NC_000014.9 scf7180000171523 100.0 True CONTIG scf7180000171523 748 correct 65976779 65977530 1 752 NC_000014.9 scf7180000171524 100.0 True CONTIG scf7180000171524 789 correct CONTIG scf7180000171525 431 unaligned CONTIG scf7180000171526 442 unaligned CONTIG scf7180000171527 289 unaligned 60223370 60224721 1352 1 NC_000014.9 scf7180000171528 100.0 True CONTIG scf7180000171528 1485 correct 75109846 75111658 1 1813 NC_000014.9 scf7180000171529 100.0 True CONTIG scf7180000171529 1827 correct 101663214 101663891 678 1 NC_000014.9 scf7180000171530 100.0 True CONTIG scf7180000171530 883 correct CONTIG scf7180000171531 444 unaligned 49230469 49231119 651 1 NC_000014.9 scf7180000171532 100.0 True CONTIG scf7180000171532 1108 correct CONTIG scf7180000171533 305 unaligned 48227908 48229918 1 1983 NC_000014.9 scf7180000171534 98.61 True CONTIG scf7180000171534 1983 correct 41768605 41769552 1 948 NC_000014.9 scf7180000171535 100.0 True CONTIG scf7180000171535 1020 correct CONTIG scf7180000171536 391 unaligned CONTIG scf7180000171537 583 unaligned 38911902 38912450 2 550 NC_000014.9 scf7180000171538 100.0 True CONTIG scf7180000171538 630 correct 72418403 72420083 1681 1 NC_000014.9 scf7180000171539 99.94 True CONTIG scf7180000171539 1704 correct CONTIG scf7180000171540 332 unaligned CONTIG scf7180000171541 438 unaligned CONTIG scf7180000171542 367 unaligned CONTIG scf7180000171543 301 unaligned CONTIG scf7180000171544 581 unaligned CONTIG scf7180000171545 667 unaligned CONTIG scf7180000171546 335 unaligned 41417407 41418091 685 1 NC_000014.9 scf7180000171547 99.71 True CONTIG scf7180000171547 685 correct 41742322 41742912 1 601 NC_000014.9 scf7180000171548 98.34 True CONTIG scf7180000171548 601 correct CONTIG scf7180000171549 329 unaligned CONTIG scf7180000171550 417 unaligned CONTIG scf7180000171551 503 unaligned CONTIG scf7180000171552 359 unaligned 81169173 81170890 1 1718 NC_000014.9 scf7180000171553 99.88 True CONTIG scf7180000171553 1794 correct CONTIG scf7180000171554 307 unaligned 83839455 83840736 1282 1 NC_000014.9 scf7180000171555 100.0 True CONTIG scf7180000171555 1299 correct CONTIG scf7180000171556 440 unaligned CONTIG scf7180000171557 446 unaligned CONTIG scf7180000171558 407 unaligned CONTIG scf7180000171559 340 unaligned CONTIG scf7180000171560 338 unaligned 41570311 41570976 666 1 NC_000014.9 scf7180000171561 100.0 True CONTIG scf7180000171561 816 correct CONTIG scf7180000171562 579 unaligned 85912829 85913486 1 658 NC_000014.9 scf7180000171563 100.0 True relocation, inconsistency = 10797829 75113610 75114998 2047 660 NC_000014.9 scf7180000171563 99.93 True CONTIG scf7180000171563 2047 misassembled 59615428 59616165 1 738 NC_000014.9 scf7180000171564 100.0 True CONTIG scf7180000171564 795 correct CONTIG scf7180000171566 405 unaligned 97930234 97931141 1 904 NC_000014.9 scf7180000171567 99.56 True CONTIG scf7180000171567 904 correct 59240778 59241608 831 1 NC_000014.9 scf7180000171568 100.0 True CONTIG scf7180000171568 953 correct CONTIG scf7180000171569 326 unaligned 72151598 72152244 1 647 NC_000014.9 scf7180000171570 99.85 True CONTIG scf7180000171570 647 correct CONTIG scf7180000171571 438 unaligned CONTIG scf7180000171572 528 unaligned 67197190 67198921 1732 1 NC_000014.9 scf7180000171573 100.0 True CONTIG scf7180000171573 1807 correct 65899594 65900155 1 562 NC_000014.9 scf7180000171574 100.0 True CONTIG scf7180000171574 765 correct 63631654 63632177 66 589 NC_000014.9 scf7180000171575 98.47 True CONTIG scf7180000171575 589 correct CONTIG scf7180000171576 411 unaligned CONTIG scf7180000171577 526 unaligned 21679489 21680176 688 1 NC_000014.9 scf7180000171578 99.85 True CONTIG scf7180000171578 864 correct CONTIG scf7180000171579 461 unaligned CONTIG scf7180000171580 321 unaligned 50381183 50381852 1 658 NC_000014.9 scf7180000171581 98.21 True CONTIG scf7180000171581 658 correct CONTIG scf7180000171582 297 unaligned CONTIG scf7180000171583 315 unaligned 95525564 95526093 1 530 NC_000014.9 scf7180000171584 100.0 True CONTIG scf7180000171584 530 correct 87102439 87103297 1 859 NC_000014.9 scf7180000171585 100.0 True CONTIG scf7180000171585 929 correct 69771365 69772413 1 1049 NC_000014.9 scf7180000171586 99.9 True CONTIG scf7180000171586 1049 correct 69543671 69545174 1 1504 NC_000014.9 scf7180000171587 99.93 True relocation, inconsistency = 6489046 76034221 76034754 1505 2038 NC_000014.9 scf7180000171587 100.0 True CONTIG scf7180000171587 2038 misassembled CONTIG scf7180000171588 303 unaligned 80709728 80711330 1 1603 NC_000014.9 scf7180000171589 99.94 True CONTIG scf7180000171589 1925 correct 91265211 91265998 1 788 NC_000014.9 scf7180000171590 100.0 True CONTIG scf7180000171590 822 correct 80365296 80366434 1139 1 NC_000014.9 scf7180000171591 99.91 True CONTIG scf7180000171591 1375 correct CONTIG scf7180000171592 379 unaligned CONTIG scf7180000171593 413 unaligned 68223706 68224800 1 1095 NC_000014.9 scf7180000171594 100.0 True CONTIG scf7180000171594 1097 correct CONTIG scf7180000171595 848 unaligned CONTIG scf7180000171596 384 unaligned 36434956 36436330 11 1385 NC_000014.9 scf7180000171597 99.72 True relocation, inconsistency = 15193719 21239790 21241236 2832 1386 NC_000014.9 scf7180000171597 99.79 True CONTIG scf7180000171597 2988 misassembled 67988312 67989380 355 1423 NC_000014.9 scf7180000171598 100.0 True CONTIG scf7180000171598 1423 correct 78384636 78386000 1 1353 NC_000014.9 scf7180000171599 99.12 True CONTIG scf7180000171599 1353 correct CONTIG scf7180000171600 474 unaligned CONTIG scf7180000171601 300 unaligned 19943442 19944084 643 1 NC_000014.9 scf7180000171602 100.0 True relocation, inconsistency = -17514615 37457374 37458056 1326 644 NC_000014.9 scf7180000171602 100.0 True CONTIG scf7180000171602 1326 misassembled CONTIG scf7180000171603 613 unaligned CONTIG scf7180000171604 542 unaligned 54277010 54278380 1 1371 NC_000014.9 scf7180000171605 100.0 True CONTIG scf7180000171605 1566 correct CONTIG scf7180000171606 441 unaligned 87907517 87908614 1098 1 NC_000014.9 scf7180000171607 100.0 True CONTIG scf7180000171607 1154 correct 75396069 75396742 682 9 NC_000014.9 scf7180000171608 99.7 True CONTIG scf7180000171608 682 correct CONTIG scf7180000171609 480 unaligned 88798107 88799910 1804 1 NC_000014.9 scf7180000171610 99.94 True fake: scaffold gap size wrong estimation (local) 88784362 88796040 15165 3564 NC_000014.9 scf7180000171610 98.83 True CONTIG scf7180000171610 15165 correct CONTIG scf7180000171611 311 unaligned CONTIG scf7180000171612 349 unaligned 75992814 75994181 1368 1 NC_000014.9 scf7180000171613 100.0 True CONTIG scf7180000171613 1399 correct 102826623 102827351 1 729 NC_000014.9 scf7180000171614 100.0 True CONTIG scf7180000171614 953 correct 45339708 45340449 1 742 NC_000014.9 scf7180000171615 100.0 True CONTIG scf7180000171615 841 correct CONTIG scf7180000171616 610 unaligned 73755784 73756296 1 513 NC_000014.9 scf7180000171617 100.0 True CONTIG scf7180000171617 566 correct 64769098 64770086 1 989 NC_000014.9 scf7180000171618 100.0 True relocation, inconsistency = 34107667 98877754 98878687 990 1923 NC_000014.9 scf7180000171618 100.0 True CONTIG scf7180000171618 1923 misassembled CONTIG scf7180000171619 505 unaligned CONTIG scf7180000171620 641 unaligned 74681843 74682436 1 594 NC_000014.9 scf7180000171621 100.0 True CONTIG scf7180000171621 848 correct CONTIG scf7180000171622 434 unaligned 88899868 88900670 806 4 NC_000014.9 scf7180000171623 100.0 True CONTIG scf7180000171623 826 correct 60272715 60273897 1 1183 NC_000014.9 scf7180000171624 100.0 True CONTIG scf7180000171624 1234 correct 71578854 71579433 580 1 NC_000014.9 scf7180000171625 100.0 True relocation, inconsistency = 25740944 45836646 45837909 1844 581 NC_000014.9 scf7180000171625 100.0 True CONTIG scf7180000171625 1844 misassembled CONTIG scf7180000171626 301 unaligned 66968589 66969635 1 1047 NC_000014.9 scf7180000171627 100.0 True CONTIG scf7180000171627 1047 correct CONTIG scf7180000171628 523 unaligned CONTIG scf7180000171629 595 unaligned CONTIG scf7180000171630 646 unaligned CONTIG scf7180000171632 315 unaligned CONTIG scf7180000171633 412 unaligned CONTIG scf7180000171634 488 unaligned CONTIG scf7180000171635 389 unaligned 63867643 63868363 827 115 NC_000014.9 scf7180000171636 98.06 True CONTIG scf7180000171636 888 correct 38336868 38337780 913 1 NC_000014.9 scf7180000171637 99.56 True CONTIG scf7180000171637 913 correct CONTIG scf7180000171638 339 unaligned CONTIG scf7180000171639 628 unaligned CONTIG scf7180000171640 308 unaligned 75083584 75085074 1 1491 NC_000014.9 scf7180000171641 99.6 True CONTIG scf7180000171641 1554 correct 103231914 103232669 1 756 NC_000014.9 scf7180000171642 99.87 True CONTIG scf7180000171642 777 correct 100496042 100496802 761 1 NC_000014.9 scf7180000171643 100.0 True CONTIG scf7180000171643 946 correct 51945783 51946320 546 1 NC_000014.9 scf7180000171644 98.53 True CONTIG scf7180000171644 553 correct CONTIG scf7180000171645 444 unaligned 60765462 60766100 639 1 NC_000014.9 scf7180000171646 100.0 True CONTIG scf7180000171646 639 correct CONTIG scf7180000171647 623 unaligned 89795644 89796361 1 718 NC_000014.9 scf7180000171648 99.72 True CONTIG scf7180000171648 884 correct 77699037 77699824 1 788 NC_000014.9 scf7180000171649 99.87 True CONTIG scf7180000171649 800 correct 42652590 42653271 1 682 NC_000014.9 scf7180000171650 100.0 True CONTIG scf7180000171650 682 correct 47822167 47822818 652 1 NC_000014.9 scf7180000171651 100.0 True CONTIG scf7180000171651 849 correct 96818426 96819595 1 1170 NC_000014.9 scf7180000171652 100.0 True CONTIG scf7180000171652 1284 correct 64720860 64722199 1341 1 NC_000014.9 scf7180000171653 99.93 True CONTIG scf7180000171653 1645 correct 31985445 31986152 1 708 NC_000014.9 scf7180000171654 100.0 True CONTIG scf7180000171654 1048 correct 70915258 70916711 1 1454 NC_000014.9 scf7180000171655 100.0 True CONTIG scf7180000171655 1553 correct CONTIG scf7180000171656 393 unaligned CONTIG scf7180000171657 332 unaligned CONTIG scf7180000171658 741 unaligned 94004359 94005628 1 1270 NC_000014.9 scf7180000171659 100.0 True CONTIG scf7180000171659 1321 correct CONTIG scf7180000171660 388 unaligned CONTIG scf7180000171661 481 unaligned 104758707 104759345 639 1 NC_000014.9 scf7180000171662 100.0 True CONTIG scf7180000171662 639 correct CONTIG scf7180000171663 575 unaligned 101233211 101233957 1 747 NC_000014.9 scf7180000171664 99.87 True CONTIG scf7180000171664 810 correct 90975606 90976203 598 1 NC_000014.9 scf7180000171665 100.0 True CONTIG scf7180000171665 734 correct CONTIG scf7180000171666 471 unaligned 82903652 82910322 6684 1 NC_000014.9 scf7180000171667 99.78 True CONTIG scf7180000171667 6685 correct 98343906 98344707 1 802 NC_000014.9 scf7180000171668 100.0 True CONTIG scf7180000171668 852 correct 54359457 54360014 558 1 NC_000014.9 scf7180000171669 100.0 True CONTIG scf7180000171669 710 correct CONTIG scf7180000171670 305 unaligned CONTIG scf7180000171671 460 unaligned CONTIG scf7180000171672 202 unaligned CONTIG scf7180000171673 437 unaligned CONTIG scf7180000171674 318 unaligned 62266867 62268507 1 1641 NC_000014.9 scf7180000171675 99.88 True relocation, inconsistency = 27108542 89377050 89378005 2597 1642 NC_000014.9 scf7180000171675 99.8 True CONTIG scf7180000171675 2597 misassembled 66934140 66935490 6 1356 NC_000014.9 scf7180000171676 100.0 True CONTIG scf7180000171676 1442 correct 22427026 22429021 1998 1 NC_000014.9 scf7180000171677 99.8 True CONTIG scf7180000171677 2037 correct CONTIG scf7180000171678 412 unaligned 92071577 92072462 972 87 NC_000014.9 scf7180000171679 100.0 True CONTIG scf7180000171679 972 correct CONTIG scf7180000171680 347 unaligned CONTIG scf7180000171681 376 unaligned 46971409 46972975 1567 1 NC_000014.9 scf7180000171682 99.94 True CONTIG scf7180000171682 1703 correct CONTIG scf7180000171683 401 unaligned CONTIG scf7180000171684 408 unaligned 54906034 54906793 30 789 NC_000014.9 scf7180000171685 100.0 True CONTIG scf7180000171685 789 correct CONTIG scf7180000171686 416 unaligned 51991060 51991831 1 772 NC_000014.9 scf7180000171687 100.0 True CONTIG scf7180000171687 829 correct 52324043 52324876 171 1004 NC_000014.9 scf7180000171688 99.76 True CONTIG scf7180000171688 1004 correct 80193801 80195049 1256 8 NC_000014.9 scf7180000171689 100.0 True CONTIG scf7180000171689 1421 correct CONTIG scf7180000171690 576 unaligned 59016329 59016854 1 526 NC_000014.9 scf7180000171691 100.0 True CONTIG scf7180000171691 927 correct 76701343 76702159 817 1 NC_000014.9 scf7180000171692 100.0 True CONTIG scf7180000171692 1010 correct 61500419 61501248 830 1 NC_000014.9 scf7180000171693 100.0 True CONTIG scf7180000171693 923 correct 56908688 56909268 584 4 NC_000014.9 scf7180000171694 100.0 True CONTIG scf7180000171694 672 correct 50125359 50126295 944 1 NC_000014.9 scf7180000171695 99.26 True CONTIG scf7180000171695 944 correct CONTIG scf7180000171696 537 unaligned 38324714 38325437 1 724 NC_000014.9 scf7180000171697 99.86 True CONTIG scf7180000171697 724 correct CONTIG scf7180000171698 332 unaligned CONTIG scf7180000171699 354 unaligned 95689213 95690036 824 1 NC_000014.9 scf7180000171700 99.88 True CONTIG scf7180000171700 876 correct CONTIG scf7180000171701 300 unaligned 101622062 101622813 752 1 NC_000014.9 scf7180000171702 100.0 True CONTIG scf7180000171702 755 correct 59003792 59004318 1 527 NC_000014.9 scf7180000171703 100.0 True relocation, inconsistency = 5216115 53786961 53787676 1243 528 NC_000014.9 scf7180000171703 100.0 True CONTIG scf7180000171703 1243 misassembled CONTIG scf7180000171704 312 unaligned 75539462 75541091 18 1647 NC_000014.9 scf7180000171705 99.94 True CONTIG scf7180000171705 1647 correct CONTIG scf7180000171706 415 unaligned 21231556 21232435 1 880 NC_000014.9 scf7180000171707 99.89 True CONTIG scf7180000171707 916 correct CONTIG scf7180000171708 302 unaligned CONTIG scf7180000171709 304 unaligned CONTIG scf7180000171710 387 unaligned CONTIG scf7180000171711 345 unaligned CONTIG scf7180000171712 343 unaligned 91269080 91269793 714 1 NC_000014.9 scf7180000171713 100.0 True CONTIG scf7180000171713 714 correct 48527831 48528997 82 1248 NC_000014.9 scf7180000171714 99.74 True CONTIG scf7180000171714 1248 correct CONTIG scf7180000171715 413 unaligned CONTIG scf7180000171716 324 unaligned 68155468 68156950 1489 1 NC_000014.9 scf7180000171717 99.6 True CONTIG scf7180000171717 1489 correct CONTIG scf7180000171718 466 unaligned CONTIG scf7180000171719 401 unaligned CONTIG scf7180000171720 469 unaligned 71690432 71691431 1000 1 NC_000014.9 scf7180000171721 100.0 True CONTIG scf7180000171721 1004 correct 63427892 63428467 894 319 NC_000014.9 scf7180000171722 100.0 True CONTIG scf7180000171722 894 correct CONTIG scf7180000171723 440 unaligned 82192938 82193568 1 631 NC_000014.9 scf7180000171724 99.52 True CONTIG scf7180000171724 712 correct 56039388 56040554 1167 1 NC_000014.9 scf7180000171725 100.0 True relocation, inconsistency = -37630894 93669781 93670281 1668 1168 NC_000014.9 scf7180000171725 100.0 True CONTIG scf7180000171725 1668 misassembled CONTIG scf7180000171726 726 unaligned CONTIG scf7180000171727 353 unaligned CONTIG scf7180000171728 419 unaligned CONTIG scf7180000171729 340 unaligned 97328225 97328735 1 511 NC_000014.9 scf7180000171730 100.0 True CONTIG scf7180000171730 961 correct 106861544 106862492 949 1 NC_000014.9 scf7180000171731 100.0 True CONTIG scf7180000171731 1245 correct CONTIG scf7180000171732 399 unaligned 68802850 68803886 1 1037 NC_000014.9 scf7180000171733 100.0 True CONTIG scf7180000171733 1175 correct 60495093 60496402 1310 1 NC_000014.9 scf7180000171734 100.0 True relocation, inconsistency = 38480821 22013682 22014271 1311 1900 NC_000014.9 scf7180000171734 100.0 True CONTIG scf7180000171734 1900 misassembled 58728139 58728723 1 595 NC_000014.9 scf7180000171735 98.32 True CONTIG scf7180000171735 595 correct CONTIG scf7180000171736 405 unaligned 92527684 92528382 1 699 NC_000014.9 scf7180000171737 99.86 True relocation, inconsistency = 19575131 72951556 72952552 1695 700 NC_000014.9 scf7180000171737 99.9 True CONTIG scf7180000171737 1700 misassembled 68927545 68928944 1 1400 NC_000014.9 scf7180000171738 100.0 True CONTIG scf7180000171738 1460 correct 95677728 95678635 1 908 NC_000014.9 scf7180000171739 99.78 True CONTIG scf7180000171739 908 correct 83383511 83385075 1659 95 NC_000014.9 scf7180000171740 100.0 True CONTIG scf7180000171740 1659 correct 33547634 33549291 1 1659 NC_000014.9 scf7180000171741 99.7 True CONTIG scf7180000171741 1731 correct 101864862 101866010 1 1149 NC_000014.9 scf7180000171742 100.0 True CONTIG scf7180000171742 1149 correct CONTIG scf7180000171743 734 unaligned CONTIG scf7180000171744 371 unaligned CONTIG scf7180000171745 416 unaligned CONTIG scf7180000171746 331 unaligned 97018676 97019690 1 1015 NC_000014.9 scf7180000171747 100.0 True CONTIG scf7180000171747 1472 correct CONTIG scf7180000171748 392 unaligned 75619128 75621239 2112 1 NC_000014.9 scf7180000171749 99.91 True CONTIG scf7180000171749 2112 correct CONTIG scf7180000171750 347 unaligned CONTIG scf7180000171752 311 unaligned 64580994 64581564 571 1 NC_000014.9 scf7180000171753 100.0 True CONTIG scf7180000171753 571 correct 19633955 19634886 3448 2517 NC_000014.9 scf7180000171754 99.79 True CONTIG scf7180000171754 3448 correct CONTIG scf7180000171755 311 unaligned CONTIG scf7180000171756 323 unaligned CONTIG scf7180000171757 517 unaligned 51156829 51157832 1004 1 NC_000014.9 scf7180000171758 100.0 True CONTIG scf7180000171758 1057 correct 101221706 101222321 415 1030 NC_000014.9 scf7180000171759 100.0 True CONTIG scf7180000171759 1030 correct 50115406 50117078 1673 1 NC_000014.9 scf7180000171760 100.0 True CONTIG scf7180000171760 1717 correct CONTIG scf7180000171761 492 unaligned CONTIG scf7180000171762 708 unaligned CONTIG scf7180000171763 434 unaligned 94922461 94922992 1 532 NC_000014.9 scf7180000171764 100.0 True CONTIG scf7180000171764 572 correct CONTIG scf7180000171765 432 unaligned CONTIG scf7180000171766 394 unaligned 87772675 87774377 1703 1 NC_000014.9 scf7180000171767 100.0 True CONTIG scf7180000171767 1989 correct 32899153 32900244 1092 1 NC_000014.9 scf7180000171768 100.0 True CONTIG scf7180000171768 1121 correct 73178394 73179001 608 1 NC_000014.9 scf7180000171769 100.0 True CONTIG scf7180000171769 608 correct 28843871 28844787 917 1 NC_000014.9 scf7180000171770 100.0 True CONTIG scf7180000171770 1031 correct CONTIG scf7180000171771 403 unaligned 83016886 83017448 1 563 NC_000014.9 scf7180000171772 100.0 True CONTIG scf7180000171772 643 correct 62329049 62331844 1 2794 NC_000014.9 scf7180000171773 99.39 True fake: scaffold gap size wrong estimation (local) 62331912 62344408 2893 15369 NC_000014.9 scf7180000171773 99.37 True fake: scaffold gap size wrong estimation (local) 62344474 62345225 15433 16184 NC_000014.9 scf7180000171773 99.73 True CONTIG scf7180000171773 16203 correct 62922547 62923174 628 1 NC_000014.9 scf7180000171774 100.0 True CONTIG scf7180000171774 808 correct CONTIG scf7180000171775 430 unaligned CONTIG scf7180000171776 505 unaligned CONTIG scf7180000171777 429 unaligned CONTIG scf7180000171778 324 unaligned 73773056 73773778 1 723 NC_000014.9 scf7180000171779 100.0 True fake: scaffold gap size wrong estimation (local) 73774030 73776846 1148 3864 NC_000014.9 scf7180000171779 96.35 True fake: scaffold gap size wrong estimation (local) 73777046 73778091 4261 5306 NC_000014.9 scf7180000171779 100.0 True fake: scaffold gap size wrong estimation (local) 73778331 73779146 5484 6299 NC_000014.9 scf7180000171779 99.88 True CONTIG scf7180000171779 6299 correct CONTIG scf7180000171780 513 unaligned 33307594 33308526 945 13 NC_000014.9 scf7180000171781 99.89 True CONTIG scf7180000171781 1081 correct 87970895 87971636 1055 314 NC_000014.9 scf7180000171782 100.0 True CONTIG scf7180000171782 1055 correct 75944138 75944696 559 1 NC_000014.9 scf7180000171783 99.82 True CONTIG scf7180000171783 805 correct 104815470 104817154 1 1685 NC_000014.9 scf7180000171784 99.94 True CONTIG scf7180000171784 1685 correct 53058328 53059260 933 1 NC_000014.9 scf7180000171785 99.89 True CONTIG scf7180000171785 933 correct 49658311 49658934 624 1 NC_000014.9 scf7180000171786 100.0 True CONTIG scf7180000171786 624 correct 97261439 97263213 1 1775 NC_000014.9 scf7180000171787 100.0 True CONTIG scf7180000171787 1871 correct CONTIG scf7180000171788 355 unaligned 73685473 73686098 631 6 NC_000014.9 scf7180000171789 100.0 True CONTIG scf7180000171789 631 correct CONTIG scf7180000171790 383 unaligned 73234520 73236490 1 1971 NC_000014.9 scf7180000171791 100.0 True CONTIG scf7180000171791 2178 correct CONTIG scf7180000171792 316 unaligned 74591107 74592442 1 1336 NC_000014.9 scf7180000171793 100.0 True CONTIG scf7180000171793 1364 correct CONTIG scf7180000171794 302 unaligned CONTIG scf7180000171795 592 unaligned CONTIG scf7180000171796 475 unaligned CONTIG scf7180000171797 302 unaligned 89346315 89346854 547 8 NC_000014.9 scf7180000171798 100.0 True CONTIG scf7180000171798 635 correct 74928891 74929453 563 1 NC_000014.9 scf7180000171799 100.0 True CONTIG scf7180000171799 642 correct CONTIG scf7180000171800 487 unaligned CONTIG scf7180000171801 323 unaligned CONTIG scf7180000171802 445 unaligned 91777923 91779102 1 1180 NC_000014.9 scf7180000171803 99.83 True CONTIG scf7180000171803 1180 correct CONTIG scf7180000171804 366 unaligned 38274681 38275875 1195 1 NC_000014.9 scf7180000171805 99.75 True CONTIG scf7180000171805 1195 correct 73400204 73400735 532 1 NC_000014.9 scf7180000171806 100.0 True CONTIG scf7180000171806 592 correct 70356361 70357136 779 1 NC_000014.9 scf7180000171807 99.61 True CONTIG scf7180000171807 858 correct CONTIG scf7180000171808 545 unaligned CONTIG scf7180000171809 397 unaligned CONTIG scf7180000171810 420 unaligned CONTIG scf7180000171811 501 unaligned CONTIG scf7180000171812 499 unaligned 64447470 64448962 1493 1 NC_000014.9 scf7180000171813 99.87 True CONTIG scf7180000171813 1493 correct 88623677 88624194 1 518 NC_000014.9 scf7180000171814 100.0 True CONTIG scf7180000171814 549 correct CONTIG scf7180000171815 417 unaligned CONTIG scf7180000171816 530 unaligned CONTIG scf7180000171817 380 unaligned CONTIG scf7180000171818 342 unaligned CONTIG scf7180000171819 311 unaligned CONTIG scf7180000171820 452 unaligned 85916619 85917227 609 1 NC_000014.9 scf7180000171821 100.0 True CONTIG scf7180000171821 1006 correct CONTIG scf7180000171822 501 unaligned 27442369 27443299 931 1 NC_000014.9 scf7180000171823 99.89 True CONTIG scf7180000171823 1005 correct CONTIG scf7180000171825 456 unaligned 103594166 103594715 532 1 NC_000014.9 scf7180000171826 96.73 True CONTIG scf7180000171826 539 correct 23889488 23890416 929 1 NC_000014.9 scf7180000171827 100.0 True CONTIG scf7180000171827 1014 correct CONTIG scf7180000171828 327 unaligned CONTIG scf7180000171829 320 unaligned 84666351 84667004 654 1 NC_000014.9 scf7180000171830 100.0 True CONTIG scf7180000171830 885 correct CONTIG scf7180000171831 534 unaligned CONTIG scf7180000171832 349 unaligned 35004187 35005102 1 916 NC_000014.9 scf7180000171833 100.0 True CONTIG scf7180000171833 968 correct 80774627 80775865 1239 1 NC_000014.9 scf7180000171834 100.0 True CONTIG scf7180000171834 1315 correct 66903058 66903672 615 1 NC_000014.9 scf7180000171835 100.0 True CONTIG scf7180000171835 750 correct 47133512 47136024 1 2521 NC_000014.9 scf7180000171836 99.68 True CONTIG scf7180000171836 2521 correct 49797519 49801301 3736 1 NC_000014.9 scf7180000171837 95.99 True fake: scaffold gap size wrong estimation (local) 49794814 49797389 6468 3893 NC_000014.9 scf7180000171837 99.88 True fake: scaffold gap size wrong estimation (local) 49791744 49794603 9520 6641 NC_000014.9 scf7180000171837 98.99 True fake: scaffold gap size wrong estimation (local) 49788764 49791079 12456 10197 NC_000014.9 scf7180000171837 97.34 True CONTIG scf7180000171837 12456 correct CONTIG scf7180000171839 466 unaligned 100746957 100747614 658 1 NC_000014.9 scf7180000171841 99.85 True CONTIG scf7180000171841 670 correct CONTIG scf7180000171842 347 unaligned 55160676 55161406 12 742 NC_000014.9 scf7180000171843 100.0 True CONTIG scf7180000171843 742 correct CONTIG scf7180000171844 379 unaligned CONTIG scf7180000171845 519 unaligned CONTIG scf7180000171846 446 unaligned CONTIG scf7180000171847 413 unaligned CONTIG scf7180000171848 438 unaligned CONTIG scf7180000171849 400 unaligned CONTIG scf7180000171850 504 unaligned 67477158 67477703 1 546 NC_000014.9 scf7180000171851 99.63 True CONTIG scf7180000171851 632 correct 61231641 61232368 728 1 NC_000014.9 scf7180000171852 99.31 True CONTIG scf7180000171852 728 correct 51790721 51792676 1956 1 NC_000014.9 scf7180000171853 99.59 True CONTIG scf7180000171853 1956 correct 21387922 21388483 1 562 NC_000014.9 scf7180000171854 100.0 True relocation, inconsistency = 18819648 40208132 40209070 1501 563 NC_000014.9 scf7180000171854 99.89 True CONTIG scf7180000171854 1501 misassembled CONTIG scf7180000171855 331 unaligned CONTIG scf7180000171856 432 unaligned CONTIG scf7180000171857 203 unaligned CONTIG scf7180000171858 409 unaligned CONTIG scf7180000171859 332 unaligned CONTIG scf7180000171860 261 unaligned CONTIG scf7180000171861 378 unaligned CONTIG scf7180000171863 354 unaligned CONTIG scf7180000171864 380 unaligned 103791567 103792194 1 628 NC_000014.9 scf7180000171865 100.0 True CONTIG scf7180000171865 628 correct CONTIG scf7180000171866 369 unaligned CONTIG scf7180000171867 339 unaligned CONTIG scf7180000171868 333 unaligned CONTIG scf7180000171869 291 unaligned 55128554 55129120 567 1 NC_000014.9 scf7180000171870 100.0 True CONTIG scf7180000171870 588 correct CONTIG scf7180000171871 802 unaligned 67061785 67062735 1 953 NC_000014.9 scf7180000171872 99.79 True CONTIG scf7180000171872 966 correct CONTIG scf7180000171873 373 unaligned CONTIG scf7180000171874 319 unaligned CONTIG scf7180000171875 308 unaligned 104126558 104127623 1 1066 NC_000014.9 scf7180000171876 99.72 True CONTIG scf7180000171876 1094 correct 31175893 31176717 8 832 NC_000014.9 scf7180000171877 100.0 True CONTIG scf7180000171877 832 correct CONTIG scf7180000171878 354 unaligned CONTIG scf7180000171879 353 unaligned CONTIG scf7180000171880 415 unaligned 96171921 96172510 590 1 NC_000014.9 scf7180000171881 100.0 True CONTIG scf7180000171881 590 correct 28716430 28717520 1091 1 NC_000014.9 scf7180000171882 99.82 True CONTIG scf7180000171882 1148 correct 105836012 105836533 1 522 NC_000014.9 scf7180000171883 100.0 True CONTIG scf7180000171883 522 correct 24012141 24012838 1 698 NC_000014.9 scf7180000171885 100.0 True CONTIG scf7180000171885 813 correct CONTIG scf7180000171886 346 unaligned 73685855 73686569 2 717 NC_000014.9 scf7180000171887 99.86 True CONTIG scf7180000171887 717 correct 43268060 43281870 1 13711 NC_000014.9 scf7180000171888 99.11 True relocation, inconsistency = 5883678 49165549 49166955 13712 15118 NC_000014.9 scf7180000171888 99.93 True CONTIG scf7180000171888 15118 misassembled 71984321 71985166 846 1 NC_000014.9 scf7180000171889 99.88 True CONTIG scf7180000171889 850 correct 18620849 18625930 5083 2 NC_000014.9 scf7180000171890 99.72 True CONTIG scf7180000171890 5083 correct 19275643 19278401 2797 38 NC_000014.9 scf7180000171891 99.75 True CONTIG scf7180000171891 5194 correct CONTIG scf7180000171892 353 unaligned CONTIG scf7180000171893 627 unaligned 105700202 105701569 1366 1 NC_000014.9 scf7180000171894 99.71 True relocation, inconsistency = 122786 105576542 105577415 2236 1367 NC_000014.9 scf7180000171894 99.08 True CONTIG scf7180000171894 2236 misassembled 93570157 93570658 502 1 NC_000014.9 scf7180000171895 99.8 True CONTIG scf7180000171895 637 correct CONTIG scf7180000171896 381 unaligned CONTIG scf7180000171897 409 unaligned 104947659 104948373 1 715 NC_000014.9 scf7180000171898 96.5 True CONTIG scf7180000171898 715 correct 98086816 98088032 1217 1 NC_000014.9 scf7180000171899 100.0 True CONTIG scf7180000171899 1486 correct CONTIG scf7180000171900 508 unaligned 72316904 72317722 819 1 NC_000014.9 scf7180000171901 100.0 True CONTIG scf7180000171901 1004 correct CONTIG scf7180000171902 430 unaligned 62108367 62109186 1 820 NC_000014.9 scf7180000171903 100.0 True CONTIG scf7180000171903 897 correct 54974795 54975378 584 1 NC_000014.9 scf7180000171904 99.83 True CONTIG scf7180000171904 660 correct 43609531 43610241 1 711 NC_000014.9 scf7180000171905 100.0 True relocation, inconsistency = 44559295 88169537 88170105 1280 712 NC_000014.9 scf7180000171905 100.0 True CONTIG scf7180000171905 1280 misassembled 95945404 95946720 1 1317 NC_000014.9 scf7180000171906 99.92 True CONTIG scf7180000171906 1355 correct CONTIG scf7180000171907 402 unaligned CONTIG scf7180000171908 412 unaligned CONTIG scf7180000171909 468 unaligned CONTIG scf7180000171910 458 unaligned 19951551 19953371 48 1868 NC_000014.9 scf7180000171911 100.0 True CONTIG scf7180000171911 1868 correct 79974882 79975394 513 1 NC_000014.9 scf7180000171912 99.81 True CONTIG scf7180000171912 600 correct CONTIG scf7180000171913 356 unaligned 49070561 49071585 1031 7 NC_000014.9 scf7180000171914 100.0 True CONTIG scf7180000171914 1224 correct CONTIG scf7180000171915 469 unaligned 46757338 46758733 62 1457 NC_000014.9 scf7180000171917 99.93 True CONTIG scf7180000171917 1457 correct CONTIG scf7180000171918 488 unaligned CONTIG scf7180000171919 345 unaligned 43220050 43221831 1940 159 NC_000014.9 scf7180000171920 100.0 True CONTIG scf7180000171920 1940 correct CONTIG scf7180000171921 354 unaligned CONTIG scf7180000171922 413 unaligned CONTIG scf7180000171923 472 unaligned CONTIG scf7180000171924 456 unaligned CONTIG scf7180000171925 490 unaligned CONTIG scf7180000171926 389 unaligned 89815646 89816283 1 638 NC_000014.9 scf7180000171927 99.84 True CONTIG scf7180000171927 638 correct 66553804 66554420 617 1 NC_000014.9 scf7180000171928 100.0 True CONTIG scf7180000171928 617 correct 71089738 71090549 812 1 NC_000014.9 scf7180000171929 100.0 True CONTIG scf7180000171929 876 correct 69995555 69998315 2761 1 NC_000014.9 scf7180000171930 99.93 True CONTIG scf7180000171930 2761 correct CONTIG scf7180000171931 308 unaligned 43282831 43283369 539 1 NC_000014.9 scf7180000171932 100.0 True CONTIG scf7180000171932 539 correct CONTIG scf7180000171933 696 unaligned 55328587 55329194 608 1 NC_000014.9 scf7180000171934 100.0 True CONTIG scf7180000171934 754 correct CONTIG scf7180000171935 361 unaligned CONTIG scf7180000171936 425 unaligned CONTIG scf7180000171937 423 unaligned 27150275 27151248 1096 123 NC_000014.9 scf7180000171938 99.9 True CONTIG scf7180000171938 1096 correct 44358578 44359380 1 803 NC_000014.9 scf7180000171939 100.0 True CONTIG scf7180000171939 1068 correct CONTIG scf7180000171940 355 unaligned 37975066 37976948 1 1883 NC_000014.9 scf7180000171942 99.95 True CONTIG scf7180000171942 2282 correct CONTIG scf7180000171943 426 unaligned CONTIG scf7180000171944 369 unaligned 93494342 93495195 1 854 NC_000014.9 scf7180000171945 100.0 True CONTIG scf7180000171945 1024 correct 32736228 32737614 1387 1 NC_000014.9 scf7180000171946 100.0 True CONTIG scf7180000171946 1387 correct 20834045 20835419 1 1375 NC_000014.9 scf7180000171947 99.85 True CONTIG scf7180000171947 1375 correct 20834417 20835419 20 1022 NC_000014.9 scf7180000171948 99.9 True CONTIG scf7180000171948 1203 correct CONTIG scf7180000171949 424 unaligned CONTIG scf7180000171950 472 unaligned CONTIG scf7180000171951 331 unaligned CONTIG scf7180000171952 307 unaligned 62462334 62463259 926 1 NC_000014.9 scf7180000171953 99.89 True CONTIG scf7180000171953 1002 correct CONTIG scf7180000171954 351 unaligned 91669354 91670686 1333 1 NC_000014.9 scf7180000171955 99.92 True CONTIG scf7180000171955 1333 correct CONTIG scf7180000171956 380 unaligned 23644337 23646621 2269 1 NC_000014.9 scf7180000171957 99.26 True CONTIG scf7180000171957 2269 correct CONTIG scf7180000171958 611 unaligned CONTIG scf7180000171959 565 unaligned CONTIG scf7180000171960 601 unaligned CONTIG scf7180000171961 463 unaligned 101530663 101531907 1245 1 NC_000014.9 scf7180000171962 100.0 True CONTIG scf7180000171962 1347 correct 63450146 63451026 1 881 NC_000014.9 scf7180000171963 100.0 True CONTIG scf7180000171963 915 correct 44138954 44140689 1736 1 NC_000014.9 scf7180000171964 100.0 True relocation, inconsistency = 6672905 37464685 37466048 1737 3100 NC_000014.9 scf7180000171964 100.0 True CONTIG scf7180000171964 3100 misassembled CONTIG scf7180000171965 302 unaligned CONTIG scf7180000171966 398 unaligned CONTIG scf7180000171967 302 unaligned CONTIG scf7180000171968 390 unaligned CONTIG scf7180000171969 377 unaligned 65469668 65470452 1005 221 NC_000014.9 scf7180000171970 100.0 True CONTIG scf7180000171970 1005 correct CONTIG scf7180000171971 788 unaligned CONTIG scf7180000171972 259 unaligned CONTIG scf7180000171973 472 unaligned 38628743 38629630 262 1149 NC_000014.9 scf7180000171974 99.77 True relocation, inconsistency = 28820650 67450327 67450874 1743 1196 NC_000014.9 scf7180000171974 100.0 True CONTIG scf7180000171974 1743 misassembled 96020502 96021599 1098 1 NC_000014.9 scf7180000171975 99.91 True CONTIG scf7180000171975 1409 correct 82704212 82704780 1 569 NC_000014.9 scf7180000171976 99.82 True CONTIG scf7180000171976 792 correct 104418960 104420080 1 1121 NC_000014.9 scf7180000171977 100.0 True CONTIG scf7180000171977 1157 correct 99458884 99459945 1062 1 NC_000014.9 scf7180000171978 99.81 True CONTIG scf7180000171978 1130 correct CONTIG scf7180000171979 618 unaligned CONTIG scf7180000171980 509 unaligned 69892956 69894114 1 1159 NC_000014.9 scf7180000171981 99.91 True CONTIG scf7180000171981 1466 correct CONTIG scf7180000171982 589 unaligned 79762469 79763117 8 656 NC_000014.9 scf7180000171983 99.69 True CONTIG scf7180000171983 699 correct 38041629 38042664 1036 1 NC_000014.9 scf7180000171984 100.0 True CONTIG scf7180000171984 1086 correct 58609362 58610396 1 1035 NC_000014.9 scf7180000171985 100.0 True CONTIG scf7180000171985 1160 correct CONTIG scf7180000171986 366 unaligned CONTIG scf7180000171987 386 unaligned 97507318 97508010 693 1 NC_000014.9 scf7180000171988 99.86 True CONTIG scf7180000171988 693 correct 29309298 29310030 919 187 NC_000014.9 scf7180000171989 100.0 True CONTIG scf7180000171989 919 correct 27214575 27215105 546 16 NC_000014.9 scf7180000171990 100.0 True CONTIG scf7180000171990 546 correct 25570235 25571444 194 1405 NC_000014.9 scf7180000171991 99.75 True CONTIG scf7180000171991 1405 correct CONTIG scf7180000171992 528 unaligned CONTIG scf7180000171993 576 unaligned CONTIG scf7180000171994 473 unaligned 89040788 89042548 1 1761 NC_000014.9 scf7180000171995 100.0 True relocation, inconsistency = 9583617 98626166 98626845 1762 2441 NC_000014.9 scf7180000171995 100.0 True CONTIG scf7180000171995 2441 misassembled CONTIG scf7180000171996 397 unaligned CONTIG scf7180000171997 323 unaligned 37186639 37187450 811 1 NC_000014.9 scf7180000171998 99.88 True CONTIG scf7180000171998 811 correct 89531248 89531870 666 44 NC_000014.9 scf7180000171999 100.0 True CONTIG scf7180000171999 666 correct CONTIG scf7180000172000 616 unaligned 63892813 63893376 1 564 NC_000014.9 scf7180000172001 99.82 True CONTIG scf7180000172001 619 correct 69890354 69891893 1 1540 NC_000014.9 scf7180000172002 100.0 True relocation, inconsistency = 31483406 101375300 101375850 1541 2091 NC_000014.9 scf7180000172002 100.0 True CONTIG scf7180000172002 2091 misassembled 30238411 30239256 1 846 NC_000014.9 scf7180000172003 100.0 True CONTIG scf7180000172003 846 correct 67551997 67552546 550 1 NC_000014.9 scf7180000172004 100.0 True CONTIG scf7180000172004 550 correct 35243515 35244935 11 1431 NC_000014.9 scf7180000172005 100.0 True CONTIG scf7180000172005 1431 correct CONTIG scf7180000172006 310 unaligned 97655867 97656421 62 616 NC_000014.9 scf7180000172007 99.82 True CONTIG scf7180000172007 616 correct CONTIG scf7180000172009 386 unaligned CONTIG scf7180000172010 543 unaligned CONTIG scf7180000172011 301 unaligned 49330689 49331698 1010 1 NC_000014.9 scf7180000172012 100.0 True relocation, inconsistency = 13401766 62733465 62735359 1011 2905 NC_000014.9 scf7180000172012 99.95 True CONTIG scf7180000172012 2905 misassembled CONTIG scf7180000172013 426 unaligned 64526064 64526820 757 1 NC_000014.9 scf7180000172014 100.0 True CONTIG scf7180000172014 822 correct CONTIG scf7180000172015 329 unaligned 90700781 90701771 993 1 NC_000014.9 scf7180000172016 99.8 True CONTIG scf7180000172016 993 correct CONTIG scf7180000172017 341 unaligned CONTIG scf7180000172018 461 unaligned CONTIG scf7180000172019 479 unaligned 80019217 80020556 1 1340 NC_000014.9 scf7180000172020 99.93 True CONTIG scf7180000172020 1340 correct 60438031 60439131 1569 469 NC_000014.9 scf7180000172021 100.0 True CONTIG scf7180000172021 1569 correct CONTIG scf7180000172022 576 unaligned 81977282 81978821 1 1540 NC_000014.9 scf7180000172023 100.0 True CONTIG scf7180000172023 1609 correct 106161518 106162045 5 532 NC_000014.9 scf7180000172024 100.0 True CONTIG scf7180000172024 532 correct 87683413 87684274 1 862 NC_000014.9 scf7180000172025 100.0 True CONTIG scf7180000172025 1009 correct CONTIG scf7180000172026 694 unaligned 66392458 66394504 2047 1 NC_000014.9 scf7180000172027 100.0 True CONTIG scf7180000172027 2047 correct 31770719 31771531 813 1 NC_000014.9 scf7180000172028 100.0 True CONTIG scf7180000172028 996 correct 41586118 41587752 1635 1 NC_000014.9 scf7180000172029 100.0 True CONTIG scf7180000172029 1799 correct CONTIG scf7180000172030 213 unaligned 96023419 96024007 589 1 NC_000014.9 scf7180000172031 99.83 True CONTIG scf7180000172031 770 correct 89108066 89109899 1 1834 NC_000014.9 scf7180000172032 99.95 True CONTIG scf7180000172032 1928 correct 79251890 79253590 1 1701 NC_000014.9 scf7180000172033 100.0 True CONTIG scf7180000172033 1767 correct 19658890 19659630 1 741 NC_000014.9 scf7180000172034 99.87 True CONTIG scf7180000172034 741 correct 50067364 50068632 1269 1 NC_000014.9 scf7180000172035 100.0 True relocation, inconsistency = 33515314 83583947 83584647 1270 1970 NC_000014.9 scf7180000172035 100.0 True CONTIG scf7180000172035 1970 misassembled CONTIG scf7180000172036 414 unaligned 88564006 88565057 1 1052 NC_000014.9 scf7180000172037 99.9 True relocation, inconsistency = 66569109 21994211 21994896 1738 1053 NC_000014.9 scf7180000172037 100.0 True CONTIG scf7180000172037 1738 misassembled 69390085 69390900 816 1 NC_000014.9 scf7180000172038 100.0 True CONTIG scf7180000172038 1168 correct CONTIG scf7180000172039 423 unaligned 74996319 74997075 757 1 NC_000014.9 scf7180000172040 100.0 True CONTIG scf7180000172040 757 correct 54974795 54975378 91 674 NC_000014.9 scf7180000172041 99.83 True CONTIG scf7180000172041 674 correct CONTIG scf7180000172042 686 unaligned 39007237 39008266 1 1030 NC_000014.9 scf7180000172043 99.9 True CONTIG scf7180000172043 1266 correct 36885558 36886836 1279 1 NC_000014.9 scf7180000172044 99.53 True CONTIG scf7180000172044 1350 correct 25470891 25472323 232 1664 NC_000014.9 scf7180000172045 99.86 True CONTIG scf7180000172045 1664 correct 105425478 105426334 857 1 NC_000014.9 scf7180000172046 99.88 True CONTIG scf7180000172046 927 correct 36780770 36781519 6 755 NC_000014.9 scf7180000172047 100.0 True CONTIG scf7180000172047 1071 correct 47549953 47550455 503 1 NC_000014.9 scf7180000172048 100.0 True CONTIG scf7180000172048 619 correct 69898705 69899308 1 604 NC_000014.9 scf7180000172049 99.83 True CONTIG scf7180000172049 760 correct 40708074 40708643 570 1 NC_000014.9 scf7180000172050 100.0 True CONTIG scf7180000172050 636 correct 32057583 32059032 44 1493 NC_000014.9 scf7180000172051 100.0 True CONTIG scf7180000172051 1493 correct CONTIG scf7180000172052 372 unaligned 94359964 94360853 890 1 NC_000014.9 scf7180000172053 99.89 True CONTIG scf7180000172053 1130 correct 70134240 70134906 1 667 NC_000014.9 scf7180000172054 100.0 True CONTIG scf7180000172054 994 correct CONTIG scf7180000172055 507 unaligned CONTIG scf7180000172056 433 unaligned 87265396 87266952 1 1557 NC_000014.9 scf7180000172057 99.74 True relocation, inconsistency = 51312027 35951910 35953368 3016 1558 NC_000014.9 scf7180000172057 100.0 True CONTIG scf7180000172057 3016 misassembled CONTIG scf7180000172058 540 unaligned 71295959 71296895 937 1 NC_000014.9 scf7180000172059 100.0 True CONTIG scf7180000172059 937 correct CONTIG scf7180000172060 397 unaligned CONTIG scf7180000172061 321 unaligned 27214902 27215501 600 1 NC_000014.9 scf7180000172062 99.17 True CONTIG scf7180000172062 600 correct 38323012 38324030 148 1166 NC_000014.9 scf7180000172063 100.0 True CONTIG scf7180000172063 1166 correct CONTIG scf7180000172064 309 unaligned 79406568 79407739 1 1172 NC_000014.9 scf7180000172065 99.74 True CONTIG scf7180000172065 1284 correct 95722012 95722983 421 1392 NC_000014.9 scf7180000172066 100.0 True CONTIG scf7180000172066 1392 correct CONTIG scf7180000172067 336 unaligned 106793610 106794321 1 712 NC_000014.9 scf7180000172068 100.0 True CONTIG scf7180000172068 833 correct 34825938 34826541 795 192 NC_000014.9 scf7180000172069 100.0 True CONTIG scf7180000172069 795 correct 34825878 34826541 664 1 NC_000014.9 scf7180000172070 100.0 True CONTIG scf7180000172070 664 correct 63169181 63169753 573 1 NC_000014.9 scf7180000172071 99.83 True relocation, inconsistency = 28435977 34732352 34733203 574 1423 NC_000014.9 scf7180000172071 99.41 True CONTIG scf7180000172071 1423 misassembled 105993744 105994700 957 1 NC_000014.9 scf7180000172072 100.0 True CONTIG scf7180000172072 1402 correct 106828937 106829913 977 1 NC_000014.9 scf7180000172073 100.0 True CONTIG scf7180000172073 1051 correct 39465907 39466594 1 688 NC_000014.9 scf7180000172074 100.0 True CONTIG scf7180000172074 806 correct 55746990 55748758 1769 1 NC_000014.9 scf7180000172075 99.83 True relocation, inconsistency = 25961830 29784524 29785159 2405 1770 NC_000014.9 scf7180000172075 100.0 True CONTIG scf7180000172075 2405 misassembled 40795255 40796336 1082 1 NC_000014.9 scf7180000172076 100.0 True CONTIG scf7180000172076 1281 correct CONTIG scf7180000172077 475 unaligned CONTIG scf7180000172078 547 unaligned 32082122 32082719 1 598 NC_000014.9 scf7180000172079 100.0 True CONTIG scf7180000172079 598 correct CONTIG scf7180000172080 366 unaligned 69995555 69997059 1 1505 NC_000014.9 scf7180000172081 99.87 True CONTIG scf7180000172081 1935 correct CONTIG scf7180000172082 330 unaligned 103812641 103813143 1 503 NC_000014.9 scf7180000172083 100.0 True CONTIG scf7180000172083 503 correct CONTIG scf7180000172084 654 unaligned 88395501 88396296 977 182 NC_000014.9 scf7180000172085 100.0 True fake: scaffold gap size wrong estimation (local) 88393960 88395500 3044 1504 NC_000014.9 scf7180000172085 99.94 True CONTIG scf7180000172085 3044 correct 88394233 88396279 2047 1 NC_000014.9 scf7180000172086 100.0 True CONTIG scf7180000172086 2047 correct 64060751 64062097 1347 1 NC_000014.9 scf7180000172087 99.93 True relocation, inconsistency = 22381071 41679169 41679679 1348 1858 NC_000014.9 scf7180000172087 100.0 True CONTIG scf7180000172087 1858 misassembled 41219172 41219735 1 564 NC_000014.9 scf7180000172088 100.0 True CONTIG scf7180000172088 564 correct 56002543 56003734 1224 33 NC_000014.9 scf7180000172089 100.0 True CONTIG scf7180000172089 1224 correct 83268165 83268984 819 1 NC_000014.9 scf7180000172090 99.76 True CONTIG scf7180000172090 910 correct 48551397 48551952 1 556 NC_000014.9 scf7180000172091 99.82 True CONTIG scf7180000172091 1011 correct CONTIG scf7180000172092 533 unaligned CONTIG scf7180000172093 366 unaligned 104271591 104272985 1 1395 NC_000014.9 scf7180000172094 100.0 True CONTIG scf7180000172094 1399 correct 39456633 39457319 1 687 NC_000014.9 scf7180000172096 99.85 True CONTIG scf7180000172096 771 correct 96769084 96769808 721 1 NC_000014.9 scf7180000172097 99.31 True CONTIG scf7180000172097 722 correct 69961765 69962730 966 1 NC_000014.9 scf7180000172098 100.0 True CONTIG scf7180000172098 966 correct CONTIG scf7180000172099 767 unaligned 88803151 88803722 87 658 NC_000014.9 scf7180000172100 100.0 True CONTIG scf7180000172100 658 correct CONTIG scf7180000172101 441 unaligned 88803020 88803722 703 1 NC_000014.9 scf7180000172102 100.0 True CONTIG scf7180000172102 751 correct CONTIG scf7180000172103 623 unaligned 90243847 90244781 1006 72 NC_000014.9 scf7180000172104 99.89 True CONTIG scf7180000172104 1006 correct CONTIG scf7180000172105 331 unaligned 88826585 88835675 10100 1010 NC_000014.9 scf7180000172106 99.99 True CONTIG scf7180000172106 10100 correct CONTIG scf7180000172107 708 unaligned 90354459 90354973 515 1 NC_000014.9 scf7180000172108 99.22 True CONTIG scf7180000172108 515 correct 100625905 100627382 1478 1 NC_000014.9 scf7180000172109 100.0 True relocation, inconsistency = 18672199 81952299 81953705 1479 2885 NC_000014.9 scf7180000172109 100.0 True CONTIG scf7180000172109 2885 misassembled 83185001 83185715 1 715 NC_000014.9 scf7180000172110 99.86 True CONTIG scf7180000172110 813 correct 37944452 37945380 1 929 NC_000014.9 scf7180000172111 100.0 True relocation, inconsistency = 5720108 43665489 43666607 930 2048 NC_000014.9 scf7180000172111 99.82 True CONTIG scf7180000172111 2048 misassembled 30739960 30741321 190 1551 NC_000014.9 scf7180000172112 100.0 True CONTIG scf7180000172112 1551 correct 62157396 62158069 674 1 NC_000014.9 scf7180000172113 99.85 True CONTIG scf7180000172113 713 correct CONTIG scf7180000172114 542 unaligned 48898142 48899419 1 1278 NC_000014.9 scf7180000172115 100.0 True relocation, inconsistency = 8149158 57048578 57050347 1279 3048 NC_000014.9 scf7180000172115 99.89 True CONTIG scf7180000172115 3048 misassembled CONTIG scf7180000172117 365 unaligned CONTIG scf7180000172118 928 unaligned 94564600 94565594 995 1 NC_000014.9 scf7180000172119 99.9 True CONTIG scf7180000172119 1166 correct 103294749 103295786 1060 23 NC_000014.9 scf7180000172120 100.0 True CONTIG scf7180000172120 1060 correct 67435421 67436544 1124 1 NC_000014.9 scf7180000172121 100.0 True CONTIG scf7180000172121 1205 correct 37095825 37096340 2 517 NC_000014.9 scf7180000172122 99.81 True CONTIG scf7180000172122 580 correct 27364114 27364865 848 97 NC_000014.9 scf7180000172123 99.6 True CONTIG scf7180000172123 848 correct 27720677 27722142 1466 1 NC_000014.9 scf7180000172124 99.93 True CONTIG scf7180000172124 1733 correct CONTIG scf7180000172125 408 unaligned CONTIG scf7180000172126 324 unaligned CONTIG scf7180000172127 312 unaligned 43810867 43811806 1 940 NC_000014.9 scf7180000172128 100.0 True CONTIG scf7180000172128 954 correct CONTIG scf7180000172129 384 unaligned 28098256 28099527 1272 1 NC_000014.9 scf7180000172130 100.0 True CONTIG scf7180000172130 1336 correct 46765836 46767321 1 1486 NC_000014.9 scf7180000172131 99.8 True CONTIG scf7180000172131 1603 correct CONTIG scf7180000172132 722 unaligned CONTIG scf7180000172133 503 unaligned 87860842 87862635 1800 7 NC_000014.9 scf7180000172134 99.89 True CONTIG scf7180000172134 1853 correct 65229081 65230924 1 1844 NC_000014.9 scf7180000172135 100.0 True CONTIG scf7180000172135 2122 correct CONTIG scf7180000172136 385 unaligned 48384180 48385310 1131 1 NC_000014.9 scf7180000172137 99.91 True CONTIG scf7180000172137 1131 correct 82245857 82247906 1 2050 NC_000014.9 scf7180000172138 99.95 True CONTIG scf7180000172138 2050 correct CONTIG scf7180000172139 499 unaligned 58839539 58840859 420 1740 NC_000014.9 scf7180000172140 100.0 True CONTIG scf7180000172140 1740 correct 26555251 26556568 1 1318 NC_000014.9 scf7180000172141 99.92 True CONTIG scf7180000172141 1545 correct CONTIG scf7180000172142 581 unaligned CONTIG scf7180000172144 409 unaligned CONTIG scf7180000172145 484 unaligned 45210950 45212888 2047 109 NC_000014.9 scf7180000172146 99.95 True CONTIG scf7180000172146 2047 correct CONTIG scf7180000172147 339 unaligned 87193926 87195237 1312 1 NC_000014.9 scf7180000172148 100.0 True CONTIG scf7180000172148 1525 correct 99626268 99627144 877 1 NC_000014.9 scf7180000172149 99.89 True CONTIG scf7180000172149 1366 correct CONTIG scf7180000172150 640 unaligned 94004359 94005628 1448 179 NC_000014.9 scf7180000172151 100.0 True CONTIG scf7180000172151 1448 correct 100390388 100391839 1447 1 NC_000014.9 scf7180000172152 99.66 True CONTIG scf7180000172152 1782 correct CONTIG scf7180000172153 317 unaligned 30608944 30610447 1 1504 NC_000014.9 scf7180000172154 100.0 True CONTIG scf7180000172154 1510 correct CONTIG scf7180000172155 534 unaligned CONTIG scf7180000172156 504 unaligned 47947270 47948556 116 1402 NC_000014.9 scf7180000172157 99.92 True CONTIG scf7180000172157 1402 correct 55198491 55199419 1 929 NC_000014.9 scf7180000172158 100.0 True CONTIG scf7180000172158 1040 correct 75865996 75867072 1 1077 NC_000014.9 scf7180000172159 99.72 True relocation, inconsistency = 18191742 94058815 94059784 1078 2047 NC_000014.9 scf7180000172159 100.0 True CONTIG scf7180000172159 2047 misassembled CONTIG scf7180000172160 688 unaligned 66611828 66613215 1 1388 NC_000014.9 scf7180000172161 100.0 True CONTIG scf7180000172161 1558 correct 102368513 102369430 99 1016 NC_000014.9 scf7180000172162 100.0 True CONTIG scf7180000172162 1016 correct 99308240 99308872 633 1 NC_000014.9 scf7180000172163 99.68 True CONTIG scf7180000172163 680 correct CONTIG scf7180000172164 558 unaligned CONTIG scf7180000172165 316 unaligned 67998594 68000527 1934 1 NC_000014.9 scf7180000172166 100.0 True CONTIG scf7180000172166 2009 correct CONTIG scf7180000172167 415 unaligned 26511664 26513679 2017 1 NC_000014.9 scf7180000172168 99.9 True CONTIG scf7180000172168 2017 correct 38383539 38385107 1733 165 NC_000014.9 scf7180000172169 99.94 True CONTIG scf7180000172169 1733 correct 93834881 93836355 1523 49 NC_000014.9 scf7180000172170 100.0 True CONTIG scf7180000172170 1523 correct CONTIG scf7180000172171 302 unaligned 30316322 30317019 1 698 NC_000014.9 scf7180000172172 99.86 True relocation, inconsistency = 5351682 24964008 24964639 1330 699 NC_000014.9 scf7180000172172 100.0 True CONTIG scf7180000172172 1330 misassembled 24963987 24964673 687 1 NC_000014.9 scf7180000172173 100.0 True CONTIG scf7180000172173 687 correct CONTIG scf7180000172174 558 unaligned CONTIG scf7180000172175 571 unaligned 45586011 45586908 898 1 NC_000014.9 scf7180000172176 100.0 True CONTIG scf7180000172176 986 correct 47881289 47882970 1682 1 NC_000014.9 scf7180000172177 99.76 True CONTIG scf7180000172177 1719 correct 60183546 60184255 710 1 NC_000014.9 scf7180000172178 100.0 True CONTIG scf7180000172178 1065 correct CONTIG scf7180000172179 402 unaligned CONTIG scf7180000172180 373 unaligned 58913251 58914353 1103 1 NC_000014.9 scf7180000172181 99.91 True CONTIG scf7180000172181 1181 correct 103101313 103102276 964 1 NC_000014.9 scf7180000172182 100.0 True CONTIG scf7180000172182 1009 correct CONTIG scf7180000172183 527 unaligned CONTIG scf7180000172184 453 unaligned CONTIG scf7180000172185 348 unaligned CONTIG scf7180000172186 515 unaligned CONTIG scf7180000172187 467 unaligned 104503331 104504388 1058 1 NC_000014.9 scf7180000172188 99.72 True CONTIG scf7180000172188 1300 correct 32052245 32053369 1 1125 NC_000014.9 scf7180000172189 99.73 True CONTIG scf7180000172189 1172 correct 43567393 43569138 1746 1 NC_000014.9 scf7180000172190 100.0 True CONTIG scf7180000172190 1746 correct 41059953 41061613 1 1661 NC_000014.9 scf7180000172191 99.88 True CONTIG scf7180000172191 1661 correct 88642435 88643518 1 1084 NC_000014.9 scf7180000172192 100.0 True CONTIG scf7180000172192 1459 correct 32504676 32505538 1344 482 NC_000014.9 scf7180000172193 100.0 True CONTIG scf7180000172193 1344 correct 100759933 100760707 497 1271 NC_000014.9 scf7180000172194 100.0 True CONTIG scf7180000172194 1271 correct CONTIG scf7180000172195 395 unaligned CONTIG scf7180000172196 318 unaligned 36601040 36602357 1367 50 NC_000014.9 scf7180000172197 100.0 True CONTIG scf7180000172197 1367 correct 104997050 104997767 1 718 NC_000014.9 scf7180000172198 99.86 True CONTIG scf7180000172198 1113 correct CONTIG scf7180000172199 252 unaligned 19401290 19410762 9473 1 NC_000014.9 scf7180000172200 99.77 True CONTIG scf7180000172200 9473 correct 56814754 56815810 1061 1 NC_000014.9 scf7180000172201 99.62 True CONTIG scf7180000172201 1112 correct CONTIG scf7180000172202 529 unaligned 32269801 32270548 1 748 NC_000014.9 scf7180000172203 99.87 True CONTIG scf7180000172203 983 correct 35164557 35165278 722 1 NC_000014.9 scf7180000172204 100.0 True CONTIG scf7180000172204 764 correct 52605536 52606137 1 602 NC_000014.9 scf7180000172205 100.0 True CONTIG scf7180000172205 659 correct 55118664 55119589 1 926 NC_000014.9 scf7180000172206 99.89 True CONTIG scf7180000172206 1354 correct CONTIG scf7180000172207 422 unaligned CONTIG scf7180000172208 425 unaligned CONTIG scf7180000172209 214 unaligned 54277010 54278380 1548 178 NC_000014.9 scf7180000172210 100.0 True CONTIG scf7180000172210 1548 correct 69166270 69166963 1 694 NC_000014.9 scf7180000172211 99.71 True CONTIG scf7180000172211 737 correct CONTIG scf7180000172212 385 unaligned 77698898 77699848 1 951 NC_000014.9 scf7180000172213 99.89 True CONTIG scf7180000172213 951 correct 60726612 60727768 1157 1 NC_000014.9 scf7180000172214 100.0 True CONTIG scf7180000172214 1169 correct CONTIG scf7180000172215 718 unaligned CONTIG scf7180000172216 324 unaligned CONTIG scf7180000172217 573 unaligned 38248189 38249203 1 1015 NC_000014.9 scf7180000172218 100.0 True relocation, inconsistency = 30946410 69195614 69196287 1689 1016 NC_000014.9 scf7180000172218 99.86 True CONTIG scf7180000172218 1689 misassembled 52309822 52311559 1 1738 NC_000014.9 scf7180000172219 99.94 True CONTIG scf7180000172219 2053 correct 26000178 26000829 652 1 NC_000014.9 scf7180000172220 100.0 True CONTIG scf7180000172220 924 correct 35664035 35664749 48 764 NC_000014.9 scf7180000172221 98.88 True CONTIG scf7180000172221 764 correct 37096419 37097051 633 1 NC_000014.9 scf7180000172222 99.84 True CONTIG scf7180000172222 633 correct 37096317 37097047 731 1 NC_000014.9 scf7180000172223 99.86 True CONTIG scf7180000172223 1111 correct CONTIG scf7180000172224 389 unaligned 85297302 85297877 6 581 NC_000014.9 scf7180000172225 99.83 True CONTIG scf7180000172225 661 correct 89711275 89712599 1 1325 NC_000014.9 scf7180000172226 99.77 True CONTIG scf7180000172226 1465 correct 75567764 75568517 79 832 NC_000014.9 scf7180000172227 100.0 True CONTIG scf7180000172227 832 correct 76792036 76792809 1071 298 NC_000014.9 scf7180000172228 100.0 True CONTIG scf7180000172228 1071 correct CONTIG scf7180000172229 434 unaligned 60607589 60608479 950 60 NC_000014.9 scf7180000172230 100.0 True CONTIG scf7180000172230 950 correct 48418599 48419469 1 871 NC_000014.9 scf7180000172231 100.0 True CONTIG scf7180000172231 1286 correct 65627873 65628875 1 1003 NC_000014.9 scf7180000172232 100.0 True CONTIG scf7180000172232 1362 correct CONTIG scf7180000172233 322 unaligned 40454331 40455450 1120 1 NC_000014.9 scf7180000172234 99.83 True relocation, inconsistency = -1755700 42208302 42210030 2849 1121 NC_000014.9 scf7180000172234 99.94 True CONTIG scf7180000172234 2849 misassembled 87771841 87772674 1 834 NC_000014.9 scf7180000172235 100.0 True relocation, inconsistency = 7963425 95736100 95737067 835 1802 NC_000014.9 scf7180000172235 100.0 True CONTIG scf7180000172235 1802 misassembled CONTIG scf7180000172236 584 unaligned CONTIG scf7180000172237 475 unaligned 80019307 80020572 1 1266 NC_000014.9 scf7180000172238 99.92 True CONTIG scf7180000172238 1361 correct 23147148 23148326 1223 46 NC_000014.9 scf7180000172239 99.66 True CONTIG scf7180000172239 1223 correct CONTIG scf7180000172240 932 unaligned CONTIG scf7180000172241 555 unaligned 97730403 97731818 1 1416 NC_000014.9 scf7180000172242 99.79 True CONTIG scf7180000172242 1488 correct CONTIG scf7180000172243 569 unaligned 97785634 97786147 514 1 NC_000014.9 scf7180000172244 100.0 True CONTIG scf7180000172244 637 correct 28975831 28977241 1 1411 NC_000014.9 scf7180000172245 100.0 True CONTIG scf7180000172245 1644 correct CONTIG scf7180000172246 538 unaligned 31302111 31302901 1 791 NC_000014.9 scf7180000172247 100.0 True CONTIG scf7180000172247 1151 correct 44712666 44713211 741 196 NC_000014.9 scf7180000172248 99.82 True CONTIG scf7180000172248 741 correct 47372642 47373743 1 1102 NC_000014.9 scf7180000172249 99.91 True CONTIG scf7180000172249 1456 correct 97228626 97229383 911 154 NC_000014.9 scf7180000172250 99.87 True CONTIG scf7180000172250 911 correct 94187993 94188598 1 606 NC_000014.9 scf7180000172251 100.0 True CONTIG scf7180000172251 676 correct 50391659 50392211 1 553 NC_000014.9 scf7180000172252 100.0 True CONTIG scf7180000172252 612 correct CONTIG scf7180000172253 426 unaligned 49787487 49788041 1 555 NC_000014.9 scf7180000172255 99.64 True CONTIG scf7180000172255 555 correct 24390616 24391273 196 853 NC_000014.9 scf7180000172256 100.0 True CONTIG scf7180000172256 853 correct 66101392 66102054 669 7 NC_000014.9 scf7180000172257 100.0 True CONTIG scf7180000172257 848 correct 63363985 63365171 1 1187 NC_000014.9 scf7180000172258 100.0 True relocation, inconsistency = 11405680 51957776 51958304 1716 1188 NC_000014.9 scf7180000172258 100.0 True CONTIG scf7180000172258 1716 misassembled 61890572 61891272 1 701 NC_000014.9 scf7180000172259 99.86 True CONTIG scf7180000172259 868 correct 62390982 62392282 1 1301 NC_000014.9 scf7180000172260 99.92 True relocation, inconsistency = 37822500 24566735 24568481 3048 1302 NC_000014.9 scf7180000172260 100.0 True CONTIG scf7180000172260 3048 misassembled 67682999 67683538 96 635 NC_000014.9 scf7180000172261 100.0 True CONTIG scf7180000172261 635 correct 26937299 26938380 420 1501 NC_000014.9 scf7180000172262 100.0 True CONTIG scf7180000172262 1501 correct 49747224 49748356 1 1133 NC_000014.9 scf7180000172263 99.38 True CONTIG scf7180000172263 1133 correct CONTIG scf7180000172264 468 unaligned CONTIG scf7180000172265 389 unaligned CONTIG scf7180000172266 419 unaligned CONTIG scf7180000172267 388 unaligned 75962870 75963969 1 1100 NC_000014.9 scf7180000172268 99.73 True CONTIG scf7180000172268 1100 correct 104076393 104076987 595 1 NC_000014.9 scf7180000172269 100.0 True CONTIG scf7180000172269 595 correct 51390220 51391191 962 1 NC_000014.9 scf7180000172270 98.66 True CONTIG scf7180000172270 1055 correct 87211121 87212337 1 1217 NC_000014.9 scf7180000172271 99.84 True CONTIG scf7180000172271 1486 correct 81090983 81092980 1 1998 NC_000014.9 scf7180000172272 100.0 True relocation, inconsistency = 2702436 78387446 78388546 3099 1999 NC_000014.9 scf7180000172272 100.0 True CONTIG scf7180000172272 3099 misassembled CONTIG scf7180000172273 401 unaligned 75572250 75572870 621 1 NC_000014.9 scf7180000172274 99.68 True CONTIG scf7180000172274 746 correct 63368245 63368764 55 574 NC_000014.9 scf7180000172275 100.0 True CONTIG scf7180000172275 574 correct 65502892 65504682 135 1925 NC_000014.9 scf7180000172276 100.0 True CONTIG scf7180000172276 1925 correct 70391253 70392969 62 1778 NC_000014.9 scf7180000172277 99.94 True CONTIG scf7180000172277 1778 correct CONTIG scf7180000172278 499 unaligned CONTIG scf7180000172279 530 unaligned CONTIG scf7180000172280 423 unaligned 55154399 55155075 1 677 NC_000014.9 scf7180000172281 100.0 True CONTIG scf7180000172281 737 correct 103663294 103664022 729 1 NC_000014.9 scf7180000172282 99.86 True CONTIG scf7180000172282 735 correct 79922534 79923952 1 1419 NC_000014.9 scf7180000172283 100.0 True CONTIG scf7180000172283 1551 correct 102325756 102327033 1 1278 NC_000014.9 scf7180000172284 100.0 True CONTIG scf7180000172284 1400 correct 30764266 30765674 1 1409 NC_000014.9 scf7180000172285 99.72 True CONTIG scf7180000172285 1533 correct 97496719 97497822 1 1104 NC_000014.9 scf7180000172286 100.0 True CONTIG scf7180000172286 1424 correct CONTIG scf7180000172287 421 unaligned 31145917 31146671 755 1 NC_000014.9 scf7180000172288 100.0 True CONTIG scf7180000172288 755 correct 75944138 75944697 1 560 NC_000014.9 scf7180000172289 99.82 True CONTIG scf7180000172289 613 correct CONTIG scf7180000172290 586 unaligned 76526841 76528393 1553 1 NC_000014.9 scf7180000172291 100.0 True CONTIG scf7180000172291 1629 correct CONTIG scf7180000172292 384 unaligned CONTIG scf7180000172293 339 unaligned 82183326 82184093 775 8 NC_000014.9 scf7180000172294 100.0 True CONTIG scf7180000172294 775 correct 82182407 82183777 1371 1 NC_000014.9 scf7180000172295 99.93 True CONTIG scf7180000172295 1371 correct 82181438 82183482 2047 1 NC_000014.9 scf7180000172296 99.8 True CONTIG scf7180000172296 2047 correct 50242033 50243255 1223 1 NC_000014.9 scf7180000172297 100.0 True CONTIG scf7180000172297 1223 correct 104593045 104593686 1 642 NC_000014.9 scf7180000172298 100.0 True CONTIG scf7180000172298 642 correct CONTIG scf7180000172299 411 unaligned CONTIG scf7180000172300 337 unaligned 101024879 101025453 575 1 NC_000014.9 scf7180000172301 100.0 True CONTIG scf7180000172301 575 correct 18542172 18542733 562 1 NC_000014.9 scf7180000172302 99.29 True CONTIG scf7180000172302 562 correct 106308203 106309482 26 1284 NC_000014.9 scf7180000172303 98.2 True CONTIG scf7180000172303 1284 correct 88836956 88846092 42 9197 NC_000014.9 scf7180000172304 99.98 True fake: scaffold gap size wrong estimation (local) 88846248 88847869 9394 11015 NC_000014.9 scf7180000172304 100.0 True fake: scaffold gap size wrong estimation (local) 88848150 88854838 11197 17914 NC_000014.9 scf7180000172304 99.81 True CONTIG scf7180000172304 17914 correct 19357799 19368912 11114 1 NC_000014.9 scf7180000172305 99.79 True CONTIG scf7180000172305 11114 correct 86101958 86105443 3489 4 NC_000014.9 scf7180000172306 99.94 True CONTIG scf7180000172306 4574 correct CONTIG scf7180000172307 396 unaligned CONTIG scf7180000172308 382 unaligned CONTIG scf7180000172309 439 unaligned 63767174 63768213 1 1040 NC_000014.9 scf7180000172310 100.0 True CONTIG scf7180000172310 1040 correct 61051584 61053205 1 1622 NC_000014.9 scf7180000172311 99.57 True CONTIG scf7180000172311 1622 correct CONTIG scf7180000172312 403 unaligned 90509893 90511157 1283 19 NC_000014.9 scf7180000172313 100.0 True CONTIG scf7180000172313 1287 correct 63622665 63623453 1 788 NC_000014.9 scf7180000172314 99.87 True CONTIG scf7180000172314 788 correct 106151929 106152447 15 533 NC_000014.9 scf7180000172315 99.81 True CONTIG scf7180000172315 548 correct 18953059 18954423 4187 2817 NC_000014.9 scf7180000172316 98.61 True fake: scaffold gap size wrong estimation (local) 18951150 18952696 6224 4677 NC_000014.9 scf7180000172316 99.55 True fake: scaffold gap size wrong estimation (local) 18947280 18948917 9854 8217 NC_000014.9 scf7180000172316 99.57 True CONTIG scf7180000172316 9858 correct 105273550 105274463 1 914 NC_000014.9 scf7180000172317 99.78 True CONTIG scf7180000172317 914 correct 38320854 38321458 1 604 NC_000014.9 scf7180000172318 99.34 True CONTIG scf7180000172318 604 correct CONTIG scf7180000172319 571 unaligned CONTIG scf7180000172320 368 unaligned CONTIG scf7180000172321 366 unaligned 105682940 105683786 1 847 NC_000014.9 scf7180000172322 98.94 True CONTIG scf7180000172322 861 correct CONTIG scf7180000172323 488 unaligned 88448869 88449725 1 857 NC_000014.9 scf7180000172324 99.88 True CONTIG scf7180000172324 857 correct CONTIG scf7180000172325 381 unaligned CONTIG scf7180000172326 374 unaligned 19357613 19362405 4791 1 NC_000014.9 scf7180000172327 99.65 True local misassembly 19353200 19357370 9033 4863 NC_000014.9 scf7180000172327 99.88 True CONTIG scf7180000172327 9033 correct 18450051 18450892 924 83 NC_000014.9 scf7180000172328 99.88 True CONTIG scf7180000172328 1010 correct CONTIG scf7180000172329 490 unaligned CONTIG scf7180000172330 571 unaligned CONTIG scf7180000172331 340 unaligned 18224200 18224968 776 8 NC_000014.9 scf7180000172332 99.87 True CONTIG scf7180000172332 776 correct CONTIG scf7180000172333 570 unaligned CONTIG scf7180000172334 304 unaligned 18258540 18259160 1 621 NC_000014.9 scf7180000172335 98.87 True CONTIG scf7180000172335 676 correct 102133727 102134326 599 1 NC_000014.9 scf7180000172336 99.67 True CONTIG scf7180000172336 608 correct CONTIG scf7180000172337 408 unaligned CONTIG scf7180000172338 488 unaligned CONTIG scf7180000172339 417 unaligned CONTIG scf7180000172340 412 unaligned 77326084 77326662 1 570 NC_000014.9 scf7180000172341 98.45 True CONTIG scf7180000172341 570 correct 34510937 34511745 1 809 NC_000014.9 scf7180000172342 100.0 True CONTIG scf7180000172342 809 correct 33523908 33524740 1 833 NC_000014.9 scf7180000172343 99.88 True CONTIG scf7180000172343 1007 correct CONTIG scf7180000172344 525 unaligned 66670786 66672082 1512 216 NC_000014.9 scf7180000172345 100.0 True CONTIG scf7180000172345 1512 correct CONTIG scf7180000172346 633 unaligned CONTIG scf7180000172347 329 unaligned 93439258 93440160 1244 337 NC_000014.9 scf7180000172348 99.45 True CONTIG scf7180000172348 1244 correct 63626114 63626657 1 544 NC_000014.9 scf7180000172350 100.0 True CONTIG scf7180000172350 544 correct CONTIG scf7180000172351 286 unaligned 31306527 31307063 91 627 NC_000014.9 scf7180000172352 100.0 True CONTIG scf7180000172352 627 correct 50180535 50181235 1 701 NC_000014.9 scf7180000172353 99.86 True CONTIG scf7180000172353 701 correct CONTIG scf7180000172354 333 unaligned CONTIG scf7180000172355 474 unaligned 106288362 106288965 1 604 NC_000014.9 scf7180000172356 100.0 True CONTIG scf7180000172356 821 correct CONTIG scf7180000172357 347 unaligned CONTIG scf7180000172358 201 unaligned CONTIG scf7180000172359 543 unaligned CONTIG scf7180000172360 558 unaligned CONTIG scf7180000172361 439 unaligned CONTIG scf7180000172362 258 unaligned CONTIG scf7180000172363 429 unaligned 44748910 44750768 1859 1 NC_000014.9 scf7180000172364 100.0 True CONTIG scf7180000172364 1859 correct CONTIG scf7180000172365 346 unaligned CONTIG scf7180000172366 201 unaligned CONTIG scf7180000172367 435 unaligned 56612080 56612627 642 95 NC_000014.9 scf7180000172368 100.0 True CONTIG scf7180000172368 642 correct CONTIG scf7180000172369 708 unaligned CONTIG scf7180000172370 618 unaligned CONTIG scf7180000172371 326 unaligned 80771649 80772247 1 599 NC_000014.9 scf7180000172373 100.0 True CONTIG scf7180000172373 786 correct 32300385 32301471 1220 134 NC_000014.9 scf7180000172374 100.0 True CONTIG scf7180000172374 1220 correct CONTIG scf7180000172375 552 unaligned CONTIG scf7180000172376 469 unaligned 90736927 90737551 625 1 NC_000014.9 scf7180000172377 100.0 True CONTIG scf7180000172377 634 correct CONTIG scf7180000172379 3337 unaligned 84413259 84426254 1 13168 NC_000014.9 scf7180000172380 98.71 True CONTIG scf7180000172380 13182 correct 103808230 103809857 1 1644 NC_000014.9 scf7180000172381 99.94 True fake: scaffold gap size wrong estimation (local) 103811100 103812077 2959 3936 NC_000014.9 scf7180000172381 99.39 True CONTIG scf7180000172381 6354 correct 61081635 61092538 2522 13381 NC_000014.9 scf7180000172382 99.4 True CONTIG scf7180000172382 13411 correct 66595883 66597558 1 1676 NC_000014.9 scf7180000172383 100.0 True CONTIG scf7180000172383 2948 correct 88811912 88813304 1571 179 NC_000014.9 scf7180000172384 100.0 True relocation, scaffold gap is present, inconsistency = 54025009 34785095 34786604 3379 1870 NC_000014.9 scf7180000172384 100.0 True CONTIG scf7180000172384 3379 misassembled 64562991 64566050 1 3061 NC_000014.9 scf7180000172385 99.74 True indel: indel (<= 5bp) 64566161 64567722 3171 4707 NC_000014.9 scf7180000172385 98.25 True fake: scaffold gap size wrong estimation (local) 64567928 64570290 4911 7294 NC_000014.9 scf7180000172385 100.0 True fake: scaffold gap size wrong estimation (local) 64570426 64571216 7389 8179 NC_000014.9 scf7180000172385 99.87 True fake: scaffold gap size wrong estimation (local) 64571375 64573665 8364 10654 NC_000014.9 scf7180000172385 99.91 True fake: scaffold gap size wrong estimation (local) 64573763 64575690 10827 12755 NC_000014.9 scf7180000172385 99.69 True fake: scaffold gap size wrong estimation (local) 64576340 64577729 13532 14921 NC_000014.9 scf7180000172385 99.93 True CONTIG scf7180000172385 14921 correct 49801448 49801989 3049 2509 NC_000014.9 scf7180000172386 99.82 True CONTIG scf7180000172386 3049 correct_unaligned 18654933 18655442 1 510 NC_000014.9 scf7180000172387 98.63 True fake: scaffold gap size wrong estimation (local) 18655913 18660332 919 5389 NC_000014.9 scf7180000172387 99.68 True fake: scaffold gap size wrong estimation (local) 18661830 18662613 6986 7769 NC_000014.9 scf7180000172387 99.87 True CONTIG scf7180000172387 7769 correct 48575525 48590642 20 15148 NC_000014.9 scf7180000172388 99.68 True CONTIG scf7180000172388 15148 correct 23833078 23835280 2203 1 NC_000014.9 scf7180000172389 99.0 True CONTIG scf7180000172389 2203 correct 88834192 88836481 1 2290 NC_000014.9 scf7180000172390 100.0 True relocation, inconsistency = 24401043 64431091 64433148 4348 2291 NC_000014.9 scf7180000172390 100.0 True fake: scaffold gap size wrong estimation (local) 64428725 64430372 6681 5034 NC_000014.9 scf7180000172390 99.7 True CONTIG scf7180000172390 6681 misassembled 106041532 106042613 1 1082 NC_000014.9 scf7180000172391 100.0 True fake: scaffold gap size wrong estimation (local) 106044279 106045394 2949 4064 NC_000014.9 scf7180000172391 99.91 True fake: scaffold gap size wrong estimation (local) 106047216 106047930 5712 6426 NC_000014.9 scf7180000172391 99.86 True CONTIG scf7180000172391 6437 correct 67982152 67988270 6358 191 NC_000014.9 scf7180000172392 98.97 True fake: scaffold gap size wrong estimation (local) 67977032 67982036 11454 6450 NC_000014.9 scf7180000172392 100.0 True CONTIG scf7180000172392 12329 correct 63618406 63619944 1 1539 NC_000014.9 scf7180000172393 100.0 True fake: scaffold gap size wrong estimation (local) 63621556 63622226 3176 3846 NC_000014.9 scf7180000172393 97.02 True fake: scaffold gap size wrong estimation (local) 63623715 63625934 5373 7594 NC_000014.9 scf7180000172393 100.0 True fake: scaffold gap size wrong estimation (local) 63626872 63628176 8487 9775 NC_000014.9 scf7180000172393 98.7 True CONTIG scf7180000172393 9775 correct 67951059 67952868 1810 1 NC_000014.9 scf7180000172394 100.0 True fake: scaffold gap size wrong estimation (local) 67949313 67950742 3656 2227 NC_000014.9 scf7180000172394 100.0 True CONTIG scf7180000172394 3733 correct 88813440 88816563 1 3191 NC_000014.9 scf7180000172395 98.08 True fake: scaffold gap size wrong estimation (local) 88816794 88817524 3402 4132 NC_000014.9 scf7180000172395 99.86 True fake: scaffold gap size wrong estimation (local) 88817772 88825053 4363 11757 NC_000014.9 scf7180000172395 98.82 True CONTIG scf7180000172395 11757 correct 32878356 32878965 1 610 NC_000014.9 scf7180000172396 100.0 True CONTIG scf7180000172396 5353 correct_unaligned 67990204 67995626 490 5911 NC_000014.9 scf7180000172397 99.98 True fake: scaffold gap size wrong estimation (local) 67995891 68000579 6082 10770 NC_000014.9 scf7180000172397 99.98 True CONTIG scf7180000172397 10770 correct 67960028 67967754 7727 1 NC_000014.9 scf7180000172398 99.96 True fake: scaffold gap size wrong estimation (local) 67950605 67959289 17023 8349 NC_000014.9 scf7180000172398 99.88 True CONTIG scf7180000172398 17094 correct 60601940 60604974 3029 1 NC_000014.9 scf7180000172399 99.74 True fake: scaffold gap size wrong estimation (local) 60598952 60601757 5936 3129 NC_000014.9 scf7180000172399 99.82 True CONTIG scf7180000172399 6121 correct 87664812 87672744 1 8246 NC_000014.9 scf7180000172400 96.3 True fake: scaffold gap size wrong estimation (local) 87672838 87690859 8391 26447 NC_000014.9 scf7180000172400 99.72 True CONTIG scf7180000172400 26447 correct 88678527 88679470 1 944 NC_000014.9 scf7180000172401 100.0 True fake: scaffold gap size wrong estimation (local) 88681372 88684236 2732 5596 NC_000014.9 scf7180000172401 99.97 True relocation, scaffold gap is present, inconsistency = 7659283 81020893 81022068 6792 5617 NC_000014.9 scf7180000172401 99.91 True CONTIG scf7180000172401 6792 misassembled 18332540 18334560 2021 1 NC_000014.9 scf7180000172402 99.9 True fake: scaffold gap size wrong estimation (local) 18325919 18331014 8923 3828 NC_000014.9 scf7180000172402 99.96 True fake: scaffold gap size wrong estimation (local) 18296803 18303174 41988 35618 NC_000014.9 scf7180000172402 99.84 True fake: scaffold gap size wrong estimation (local) 18295144 18296338 43745 42549 NC_000014.9 scf7180000172402 99.42 True CONTIG scf7180000172402 43745 correct 38315578 38321003 1 5422 NC_000014.9 scf7180000172403 99.76 True fake: scaffold gap size wrong estimation (local) 38321344 38324030 5720 8406 NC_000014.9 scf7180000172403 99.96 True CONTIG scf7180000172403 8406 correct 105665292 105666135 3 844 NC_000014.9 scf7180000172404 99.41 True CONTIG scf7180000172404 844 correct CONTIG scf7180000172405 475 unaligned 71982229 71984303 1 2075 NC_000014.9 scf7180000172406 99.76 True fake: scaffold gap size wrong estimation (local) 71985305 71987534 2922 5151 NC_000014.9 scf7180000172406 99.87 True CONTIG scf7180000172406 5151 correct CONTIG scf7180000172407 673 unaligned 67233360 67234736 1377 1 NC_000014.9 scf7180000172408 99.93 True relocation, inconsistency = 2677039 64554422 64556320 3276 1378 NC_000014.9 scf7180000172408 99.89 True CONTIG scf7180000172408 3276 misassembled 34788493 34790164 79 1750 NC_000014.9 scf7180000172409 99.94 True fake: scaffold gap size wrong estimation (local) 34790576 34793680 1891 5307 NC_000014.9 scf7180000172409 99.8 True fake: scaffold gap size wrong estimation (local) 34794102 34796040 5780 7718 NC_000014.9 scf7180000172409 98.92 True fake: scaffold gap size wrong estimation (local) 34796041 34797384 7939 9282 NC_000014.9 scf7180000172409 99.78 True indel: indel (<= 5bp) 34797390 34798607 9290 10507 NC_000014.9 scf7180000172409 99.84 True CONTIG scf7180000172409 10515 correct 73687894 73689038 1 1145 NC_000014.9 scf7180000172410 99.91 True fake: scaffold gap size wrong estimation (local) 73690616 73691344 2751 3479 NC_000014.9 scf7180000172410 100.0 True fake: scaffold gap size wrong estimation (local) 73692950 73694717 5261 7029 NC_000014.9 scf7180000172410 99.89 True CONTIG scf7180000172410 7029 correct 67285474 67286613 22 1161 NC_000014.9 scf7180000172411 99.91 True relocation, scaffold gap is present, inconsistency = 6542416 73829050 73830502 2632 1182 NC_000014.9 scf7180000172411 99.79 True fake: scaffold gap size wrong estimation (local) 73827082 73828088 4759 3753 NC_000014.9 scf7180000172411 99.5 True CONTIG scf7180000172411 5678 misassembled 96448886 96449698 1040 228 NC_000014.9 scf7180000172412 97.54 True fake: scaffold gap size wrong estimation (local) 96445586 96446782 4036 2840 NC_000014.9 scf7180000172412 99.92 True CONTIG scf7180000172412 4067 correct 55268796 55269373 1 578 NC_000014.9 scf7180000172413 100.0 True fake: scaffold gap size wrong estimation (local) 55269782 55273870 1122 5226 NC_000014.9 scf7180000172413 99.9 True fake: scaffold gap size wrong estimation (local) 55274045 55275558 5366 6879 NC_000014.9 scf7180000172413 99.8 True fake: scaffold gap size wrong estimation (local) 55275689 55278906 7002 10223 NC_000014.9 scf7180000172413 99.75 True CONTIG scf7180000172413 10268 correct 21241263 21251000 1994 11928 NC_000014.9 scf7180000172414 98.55 True CONTIG scf7180000172414 11928 correct 75074100 75074610 2129 1619 NC_000014.9 scf7180000172415 99.8 True fake: scaffold gap size wrong estimation (local) 75064721 75073755 11320 2379 NC_000014.9 scf7180000172415 98.84 True fake: scaffold gap size wrong estimation (local) 75062659 75064560 13392 11491 NC_000014.9 scf7180000172415 100.0 True fake: scaffold gap size wrong estimation (local) 75060814 75061847 15160 14127 NC_000014.9 scf7180000172415 98.74 True local misassembly 75059257 75060813 16869 15313 NC_000014.9 scf7180000172415 99.94 True fake: scaffold gap size wrong estimation (local) 75058349 75058944 17615 17020 NC_000014.9 scf7180000172415 99.83 True CONTIG scf7180000172415 17659 correct 49778732 49788041 9235 189 NC_000014.9 scf7180000172416 96.57 True CONTIG scf7180000172416 9281 correct 57746179 57762660 1 16499 NC_000014.9 scf7180000172417 99.6 True relocation, inconsistency = -27229594 30533067 30533734 16500 17167 NC_000014.9 scf7180000172417 100.0 True CONTIG scf7180000172417 17167 misassembled 85377609 85378272 1 664 NC_000014.9 scf7180000172418 100.0 True relocation, inconsistency = 55259445 30117622 30118163 1211 665 NC_000014.9 scf7180000172418 99.81 True CONTIG scf7180000172418 1211 misassembled 35710828 35711579 788 37 NC_000014.9 scf7180000172419 100.0 True fake: scaffold gap size wrong estimation (local) 35702893 35710439 8523 1036 NC_000014.9 scf7180000172419 98.92 True fake: scaffold gap size wrong estimation (local) 35697469 35702743 14013 8746 NC_000014.9 scf7180000172419 99.85 True fake: scaffold gap size wrong estimation (local) 35695016 35697358 16521 14179 NC_000014.9 scf7180000172419 100.0 True CONTIG scf7180000172419 16521 correct 67469464 67474772 7345 2019 NC_000014.9 scf7180000172420 99.87 True CONTIG scf7180000172420 7345 correct CONTIG scf7180000172421 2810 unaligned 45302871 45303420 550 1 NC_000014.9 scf7180000172422 100.0 True relocation, inconsistency = -30495809 75797007 75798225 2223 1005 NC_000014.9 scf7180000172422 100.0 True CONTIG scf7180000172422 2223 misassembled 53126512 53128189 1678 1 NC_000014.9 scf7180000172423 99.82 True fake: scaffold gap size wrong estimation (local) 53124151 53125719 4042 2474 NC_000014.9 scf7180000172423 97.07 True local misassembly 53123395 53124020 4668 4043 NC_000014.9 scf7180000172423 100.0 True fake: scaffold gap size wrong estimation (local) 53120957 53121729 7047 6269 NC_000014.9 scf7180000172423 97.43 True CONTIG scf7180000172423 7678 correct 21733136 21734036 919 20 NC_000014.9 scf7180000172424 99.67 True CONTIG scf7180000172424 1324 correct 102319968 102322819 5120 2269 NC_000014.9 scf7180000172425 100.0 True CONTIG scf7180000172425 5120 correct 57028873 57036221 1 7377 NC_000014.9 scf7180000172426 99.62 True CONTIG scf7180000172426 7377 correct 55165456 55166503 1091 44 NC_000014.9 scf7180000172427 100.0 True fake: scaffold gap size wrong estimation (local) 55162526 55164768 4116 1872 NC_000014.9 scf7180000172427 99.91 True fake: not a misassembly (possible transposable element) 73438634 73440613 6216 4257 NC_000014.9 scf7180000172427 98.89 True fake: not a misassembly (possible transposable element) 55156014 55159997 10227 6244 NC_000014.9 scf7180000172427 99.8 True CONTIG scf7180000172427 10350 correct 105588201 105588759 1 559 NC_000014.9 scf7180000172428 99.82 True fake: scaffold gap size wrong estimation (local) 105590907 105593531 2577 5171 NC_000014.9 scf7180000172428 98.48 True fake: scaffold gap size wrong estimation (local) 105594625 105606505 5737 18231 NC_000014.9 scf7180000172428 99.45 True CONTIG scf7180000172428 18231 correct 105673149 105675693 1819 4363 NC_000014.9 scf7180000172429 100.0 True CONTIG scf7180000172429 5550 correct 49731558 49732224 669 3 NC_000014.9 scf7180000172430 100.0 True fake: scaffold gap size wrong estimation (local) 49722960 49730234 9573 2013 NC_000014.9 scf7180000172430 98.89 True fake: scaffold gap size wrong estimation (local) 49720093 49722199 12407 10301 NC_000014.9 scf7180000172430 99.86 True fake: scaffold gap size wrong estimation (local) 49719008 49719628 13658 13038 NC_000014.9 scf7180000172430 100.0 True fake: scaffold gap size wrong estimation (local) 49717450 49718766 15187 13871 NC_000014.9 scf7180000172430 100.0 True CONTIG scf7180000172430 15187 correct 34549519 34550183 1 665 NC_000014.9 scf7180000172431 99.4 True fake: scaffold gap size wrong estimation (local) 34551366 34552100 2058 2792 NC_000014.9 scf7180000172431 97.01 True local misassembly 34552298 34553013 2793 3508 NC_000014.9 scf7180000172431 96.37 True fake: scaffold gap size wrong estimation (local) 34553940 34555245 4617 5922 NC_000014.9 scf7180000172431 99.92 True fake: scaffold gap size wrong estimation (local) 34558134 34558990 8534 9390 NC_000014.9 scf7180000172431 100.0 True relocation, inconsistency = 1069420 35628411 35629310 10290 9391 NC_000014.9 scf7180000172431 100.0 True CONTIG scf7180000172431 10290 misassembled 102579700 102580933 1344 102 NC_000014.9 scf7180000172432 99.84 True fake: scaffold gap size wrong estimation (local) 102576879 102578889 4342 2331 NC_000014.9 scf7180000172432 99.95 True fake: scaffold gap size wrong estimation (local) 102574187 102575364 6981 5804 NC_000014.9 scf7180000172432 99.92 True CONTIG scf7180000172432 7007 correct 63776835 63777806 1 972 NC_000014.9 scf7180000172433 99.9 True fake: scaffold gap size wrong estimation (local) 63779342 63780440 2858 3957 NC_000014.9 scf7180000172433 99.82 True fake: scaffold gap size wrong estimation (local) 63782457 63783415 5882 6840 NC_000014.9 scf7180000172433 97.71 True CONTIG scf7180000172433 6858 correct 104815502 104817136 262 1896 NC_000014.9 scf7180000172434 99.94 True local misassembly 104817411 104819058 1897 3544 NC_000014.9 scf7180000172434 99.76 True fake: scaffold gap size wrong estimation (local) 104819059 104820250 3574 4765 NC_000014.9 scf7180000172434 99.83 True fake: scaffold gap size wrong estimation (local) 104821057 104823498 5654 8095 NC_000014.9 scf7180000172434 99.96 True fake: scaffold gap size wrong estimation (local) 104825687 104826667 10142 11122 NC_000014.9 scf7180000172434 99.69 True CONTIG scf7180000172434 11122 correct 105578593 105580139 188 1739 NC_000014.9 scf7180000172435 98.97 True local misassembly 105577416 105579950 1878 4412 NC_000014.9 scf7180000172435 99.68 True CONTIG scf7180000172435 5594 correct 60605810 60607369 1 1562 NC_000014.9 scf7180000172436 99.62 True fake: scaffold gap size wrong estimation (local) 60608484 60611076 2573 5165 NC_000014.9 scf7180000172436 99.92 True fake: scaffold gap size wrong estimation (local) 60612075 60612919 6521 7365 NC_000014.9 scf7180000172436 100.0 True CONTIG scf7180000172436 7439 correct 18289798 18292639 2842 1 NC_000014.9 scf7180000172437 99.75 True fake: scaffold gap size wrong estimation (local) 18280282 18283655 6219 2863 NC_000014.9 scf7180000172437 99.35 True fake: scaffold gap size wrong estimation (local) 18277952 18279202 8841 7591 NC_000014.9 scf7180000172437 99.76 True CONTIG scf7180000172437 9134 correct 18523071 18524203 4090 2958 NC_000014.9 scf7180000172438 99.82 True CONTIG scf7180000172438 4550 correct_unaligned 90243654 90244731 1078 1 NC_000014.9 scf7180000172439 99.91 True fake: scaffold gap size wrong estimation (local) 90237326 90242902 7589 1931 NC_000014.9 scf7180000172439 99.75 True fake: scaffold gap size wrong estimation (local) 90234790 90236220 9997 8568 NC_000014.9 scf7180000172439 99.93 True CONTIG scf7180000172439 9997 correct 63805643 63806889 2174 3421 NC_000014.9 scf7180000172440 99.84 True fake: scaffold gap size wrong estimation (local) 63808981 63810160 5391 6570 NC_000014.9 scf7180000172440 99.41 True fake: scaffold gap size wrong estimation (local) 63811644 63812269 8311 8936 NC_000014.9 scf7180000172440 100.0 True CONTIG scf7180000172440 8946 correct 41755650 41756845 1 1196 NC_000014.9 scf7180000172441 98.83 True fake: scaffold gap size wrong estimation (local) 41757561 41765102 1906 9414 NC_000014.9 scf7180000172441 99.34 True fake: scaffold gap size wrong estimation (local) 41765365 41775087 9604 19325 NC_000014.9 scf7180000172441 99.92 True fake: scaffold gap size wrong estimation (local) 41775267 41784674 19505 28899 NC_000014.9 scf7180000172441 99.54 True fake: scaffold gap size wrong estimation (local) 41785852 41786556 30346 31050 NC_000014.9 scf7180000172441 100.0 True CONTIG scf7180000172441 31050 correct 91553777 91556503 2727 1 NC_000014.9 scf7180000172442 99.85 True fake: scaffold gap size wrong estimation (local) 91550379 91553557 6094 2916 NC_000014.9 scf7180000172442 99.87 True fake: scaffold gap size wrong estimation (local) 91549673 91550226 6732 6179 NC_000014.9 scf7180000172442 100.0 True fake: scaffold gap size wrong estimation (local) 91548899 91549428 7522 6993 NC_000014.9 scf7180000172442 95.28 True local misassembly 91548107 91548612 8028 7523 NC_000014.9 scf7180000172442 99.8 True fake: scaffold gap size wrong estimation (local) 91545581 91547237 10789 9133 NC_000014.9 scf7180000172442 99.76 True CONTIG scf7180000172442 10789 correct 21852593 21875754 23336 6 NC_000014.9 scf7180000172443 97.91 True CONTIG scf7180000172443 23336 correct 38305786 38312756 6995 1 NC_000014.9 scf7180000172444 99.83 True fake: scaffold gap size wrong estimation (local) 38304067 38305637 8694 7124 NC_000014.9 scf7180000172444 99.94 True CONTIG scf7180000172444 8694 correct 43498317 43502854 70 4607 NC_000014.9 scf7180000172445 99.87 True fake: not a misassembly (possible transposable element) 79405531 79406316 5426 4641 NC_000014.9 scf7180000172445 100.0 True fake: not a misassembly (possible transposable element) 43502893 43508863 5463 11448 NC_000014.9 scf7180000172445 100.0 True fake: scaffold gap size wrong estimation (local) 43509025 43515218 11678 17870 NC_000014.9 scf7180000172445 99.98 True CONTIG scf7180000172445 17870 correct 64556523 64557897 47 1446 NC_000014.9 scf7180000172446 98.99 True fake: scaffold gap size wrong estimation (local) 64557941 64558677 1707 2447 NC_000014.9 scf7180000172446 99.33 True fake: scaffold gap size wrong estimation (local) 64558893 64559869 2544 3522 NC_000014.9 scf7180000172446 99.69 True fake: scaffold gap size wrong estimation (local) 64560182 64562927 3832 6547 NC_000014.9 scf7180000172446 98.64 True CONTIG scf7180000172446 6751 correct 106631485 106639880 8397 1 NC_000014.9 scf7180000172447 99.7 True fake: scaffold gap size wrong estimation (local) 106630368 106631553 10141 8956 NC_000014.9 scf7180000172447 98.82 True CONTIG scf7180000172447 10341 correct 38338012 38347248 9473 241 NC_000014.9 scf7180000172448 99.64 True fake: scaffold gap size wrong estimation (local) 38335230 38336851 12534 10910 NC_000014.9 scf7180000172448 99.69 True CONTIG scf7180000172448 12534 correct 106150077 106151450 1401 28 NC_000014.9 scf7180000172449 98.11 True fake: scaffold gap size wrong estimation (local) 106147478 106149550 4049 1977 NC_000014.9 scf7180000172449 98.36 True local misassembly 106145168 106147382 6264 4050 NC_000014.9 scf7180000172449 99.68 True fake: scaffold gap size wrong estimation (local) 106142838 106144922 9579 7495 NC_000014.9 scf7180000172449 99.57 True indel: indel (<= 5bp) 106142119 106142837 10299 9581 NC_000014.9 scf7180000172449 99.3 True CONTIG scf7180000172449 10299 correct 44022452 44023316 865 1 NC_000014.9 scf7180000172450 96.42 True local misassembly 44021692 44022226 1400 866 NC_000014.9 scf7180000172450 99.81 True fake: scaffold gap size wrong estimation (local) 44020765 44021374 2516 1907 NC_000014.9 scf7180000172450 99.67 True fake: scaffold gap size wrong estimation (local) 44015031 44020602 8163 2588 NC_000014.9 scf7180000172450 99.86 True CONTIG scf7180000172450 8163 correct 55228918 55234923 6804 800 NC_000014.9 scf7180000172451 99.87 True fake: scaffold gap size wrong estimation (local) 55227890 55228619 7892 7163 NC_000014.9 scf7180000172451 100.0 True CONTIG scf7180000172451 7892 correct 104917876 104918474 647 49 NC_000014.9 scf7180000172452 100.0 True fake: scaffold gap size wrong estimation (local) 104915154 104916050 3279 2382 NC_000014.9 scf7180000172452 99.0 True CONTIG scf7180000172452 3279 correct 96444050 96444748 707 9 NC_000014.9 scf7180000172453 100.0 True fake: scaffold gap size wrong estimation (local) 96441665 96443754 3261 1129 NC_000014.9 scf7180000172453 97.94 True fake: scaffold gap size wrong estimation (local) 96440205 96441418 4695 3482 NC_000014.9 scf7180000172453 100.0 True fake: scaffold gap size wrong estimation (local) 96436550 96439490 8297 5357 NC_000014.9 scf7180000172453 99.9 True fake: scaffold gap size wrong estimation (local) 96433940 96436391 10851 8400 NC_000014.9 scf7180000172453 99.59 True CONTIG scf7180000172453 10851 correct 63831044 63831552 25 533 NC_000014.9 scf7180000172454 99.8 True fake: scaffold gap size wrong estimation (local) 63831815 63832398 745 1328 NC_000014.9 scf7180000172454 99.66 True fake: scaffold gap size wrong estimation (local) 63832886 63833872 1917 2903 NC_000014.9 scf7180000172454 99.8 True indel: indel (<= 5bp) 63833874 63834587 2904 3617 NC_000014.9 scf7180000172454 99.72 True fake: scaffold gap size wrong estimation (local) 63836066 63837924 4975 6833 NC_000014.9 scf7180000172454 99.68 True fake: scaffold gap size wrong estimation (local) 63838183 63839147 7046 8010 NC_000014.9 scf7180000172454 99.69 True CONTIG scf7180000172454 9072 correct 35639846 35641042 1197 1 NC_000014.9 scf7180000172455 100.0 True fake: scaffold gap size wrong estimation (local) 35639038 35639713 2008 1333 NC_000014.9 scf7180000172455 100.0 True fake: scaffold gap size wrong estimation (local) 35630781 35638887 10410 2304 NC_000014.9 scf7180000172455 99.94 True fake: scaffold gap size wrong estimation (local) 35628411 35630317 12852 10885 NC_000014.9 scf7180000172455 99.21 True CONTIG scf7180000172455 12852 correct 105569888 105571469 1 1598 NC_000014.9 scf7180000172456 98.69 True fake: scaffold gap size wrong estimation (local) 105573722 105575323 3681 5282 NC_000014.9 scf7180000172456 99.81 True local misassembly 105575450 105576156 5283 5989 NC_000014.9 scf7180000172456 99.29 True relocation, scaffold gap is present, inconsistency = 117043 105693628 105695330 8124 6418 NC_000014.9 scf7180000172456 99.41 True CONTIG scf7180000172456 8124 misassembled 106549335 106549931 726 130 NC_000014.9 scf7180000172457 98.99 True fake: scaffold gap size wrong estimation (local) 106543995 106548549 5968 1410 NC_000014.9 scf7180000172457 99.34 True fake: scaffold gap size wrong estimation (local) 106541627 106543732 8320 6216 NC_000014.9 scf7180000172457 99.24 True CONTIG scf7180000172457 8320 correct 106209426 106210975 1550 1 NC_000014.9 scf7180000172458 99.61 True fake: scaffold gap size wrong estimation (local) 106206836 106209012 4196 2020 NC_000014.9 scf7180000172458 99.86 True fake: scaffold gap size wrong estimation (local) 106199375 106206352 11895 4945 NC_000014.9 scf7180000172458 99.43 True CONTIG scf7180000172458 11895 correct 23202857 23203522 667 2 NC_000014.9 scf7180000172459 99.85 True fake: scaffold gap size wrong estimation (local) 23198064 23202123 5356 1241 NC_000014.9 scf7180000172459 99.48 True fake: scaffold gap size wrong estimation (local) 23194114 23197345 9323 6026 NC_000014.9 scf7180000172459 99.78 True fake: scaffold gap size wrong estimation (local) 23193102 23193868 10355 9590 NC_000014.9 scf7180000172459 99.87 True CONTIG scf7180000172459 10355 correct 38323016 38325365 1034 3408 NC_000014.9 scf7180000172460 99.79 True fake: scaffold gap size wrong estimation (local) 38325998 38335440 3943 13385 NC_000014.9 scf7180000172460 99.84 True CONTIG scf7180000172460 13385 correct 47687078 47689702 1 2625 NC_000014.9 scf7180000172461 100.0 True fake: scaffold gap size wrong estimation (local) 47689853 47706562 2771 19406 NC_000014.9 scf7180000172461 99.2 True fake: scaffold gap size wrong estimation (local) 47706743 47725960 19589 38812 NC_000014.9 scf7180000172461 99.88 True fake: scaffold gap size wrong estimation (local) 47726157 47726947 38997 39787 NC_000014.9 scf7180000172461 99.75 True CONTIG scf7180000172461 39787 correct 48593526 48596132 794 3399 NC_000014.9 scf7180000172462 99.65 True fake: scaffold gap size wrong estimation (local) 48597085 48598898 4254 6067 NC_000014.9 scf7180000172462 98.13 True fake: scaffold gap size wrong estimation (local) 48599032 48602300 6173 9441 NC_000014.9 scf7180000172462 99.79 True fake: scaffold gap size wrong estimation (local) 48602477 48603001 9665 10184 NC_000014.9 scf7180000172462 99.05 True fake: scaffold gap size wrong estimation (local) 48603190 48607613 10329 14752 NC_000014.9 scf7180000172462 99.93 True indel: indel (> 5bp) 48607732 48608273 14895 15436 NC_000014.9 scf7180000172462 99.82 True CONTIG scf7180000172462 15436 correct 63881186 63882488 1376 42 NC_000014.9 scf7180000172463 98.94 True fake: scaffold gap size wrong estimation (local) 63878139 63880342 4362 2202 NC_000014.9 scf7180000172463 97.89 True fake: scaffold gap size wrong estimation (local) 63876758 63877887 5847 4718 NC_000014.9 scf7180000172463 99.91 True fake: scaffold gap size wrong estimation (local) 63873644 63876249 8941 6336 NC_000014.9 scf7180000172463 99.12 True fake: scaffold gap size wrong estimation (local) 63872765 63873297 10198 9666 NC_000014.9 scf7180000172463 99.81 True fake: scaffold gap size wrong estimation (local) 63871606 63872266 11073 10413 NC_000014.9 scf7180000172463 99.85 True fake: scaffold gap size wrong estimation (local) 63869633 63870802 13101 11932 NC_000014.9 scf7180000172463 98.12 True local misassembly 63868288 63869436 14250 13102 NC_000014.9 scf7180000172463 99.74 True fake: scaffold gap size wrong estimation (local) 63865740 63867383 16821 15178 NC_000014.9 scf7180000172463 99.94 True CONTIG scf7180000172463 16821 correct 34823453 34824204 1 752 NC_000014.9 scf7180000172464 99.87 True local misassembly 34824404 34825316 753 1665 NC_000014.9 scf7180000172464 97.81 True fake: scaffold gap size wrong estimation (local) 34825938 34827085 2301 3448 NC_000014.9 scf7180000172464 100.0 True fake: scaffold gap size wrong estimation (local) 34828314 34833117 4674 9397 NC_000014.9 scf7180000172464 98.04 True fake: scaffold gap size wrong estimation (local) 34833460 34835702 9673 11969 NC_000014.9 scf7180000172464 98.2 True fake: scaffold gap size wrong estimation (local) 34837269 34838744 14013 15488 NC_000014.9 scf7180000172464 99.86 True CONTIG scf7180000172464 15488 correct 91130529 91131385 2724 1868 NC_000014.9 scf7180000172465 97.67 True fake: scaffold gap size wrong estimation (local) 91127062 91128308 6055 4785 NC_000014.9 scf7180000172465 99.52 True CONTIG scf7180000172465 6055 correct 35648614 35650186 539 2111 NC_000014.9 scf7180000172466 100.0 True fake: scaffold gap size wrong estimation (local) 35650242 35652580 2474 4811 NC_000014.9 scf7180000172466 99.87 True fake: scaffold gap size wrong estimation (local) 35652678 35657179 4900 9401 NC_000014.9 scf7180000172466 100.0 True fake: scaffold gap size wrong estimation (local) 35657413 35663607 9585 15779 NC_000014.9 scf7180000172466 99.98 True fake: scaffold gap size wrong estimation (local) 35663834 35669276 15910 21389 NC_000014.9 scf7180000172466 99.76 True fake: scaffold gap size wrong estimation (local) 35669499 35670704 21566 22771 NC_000014.9 scf7180000172466 99.92 True fake: scaffold gap size wrong estimation (local) 35670915 35673655 22954 25694 NC_000014.9 scf7180000172466 100.0 True CONTIG scf7180000172466 25713 correct 35640923 35642656 2069 3802 NC_000014.9 scf7180000172467 100.0 True fake: scaffold gap size wrong estimation (local) 35642773 35645514 3962 6685 NC_000014.9 scf7180000172467 99.27 True fake: scaffold gap size wrong estimation (local) 35645736 35647852 6925 9041 NC_000014.9 scf7180000172467 100.0 True CONTIG scf7180000172467 9041 correct 64433890 64434836 709 1655 NC_000014.9 scf7180000172468 100.0 True fake: scaffold gap size wrong estimation (local) 64435157 64436187 1923 2953 NC_000014.9 scf7180000172468 100.0 True fake: scaffold gap size wrong estimation (local) 64436313 64439645 3041 6373 NC_000014.9 scf7180000172468 99.82 True fake: scaffold gap size wrong estimation (local) 64439904 64440937 6589 7621 NC_000014.9 scf7180000172468 99.9 True fake: scaffold gap size wrong estimation (local) 64441820 64446603 8445 13228 NC_000014.9 scf7180000172468 99.94 True fake: scaffold gap size wrong estimation (local) 64449012 64449876 15345 16209 NC_000014.9 scf7180000172468 100.0 True CONTIG scf7180000172468 16209 correct 55089299 55089856 1 558 NC_000014.9 scf7180000172469 100.0 True fake: scaffold gap size wrong estimation (local) 55091554 55093511 2048 4001 NC_000014.9 scf7180000172469 99.64 True CONTIG scf7180000172469 4001 correct 106473434 106474057 624 1 NC_000014.9 scf7180000172470 100.0 True fake: scaffold gap size wrong estimation (local) 106470607 106472889 3689 1388 NC_000014.9 scf7180000172470 99.87 True fake: scaffold gap size wrong estimation (local) 106463103 106470287 11148 3966 NC_000014.9 scf7180000172470 99.89 True CONTIG scf7180000172470 11148 correct 64526767 64527287 1 521 NC_000014.9 scf7180000172471 99.81 True fake: scaffold gap size wrong estimation (local) 64527622 64537734 834 11066 NC_000014.9 scf7180000172471 99.59 True fake: scaffold gap size wrong estimation (local) 64537932 64538956 11180 12204 NC_000014.9 scf7180000172471 99.8 True fake: scaffold gap size wrong estimation (local) 64539007 64539720 12281 12994 NC_000014.9 scf7180000172471 100.0 True fake: scaffold gap size wrong estimation (local) 64539842 64545282 13090 18531 NC_000014.9 scf7180000172471 99.72 True fake: scaffold gap size wrong estimation (local) 64545485 64546686 18726 19927 NC_000014.9 scf7180000172471 99.67 True fake: scaffold gap size wrong estimation (local) 64547999 64552234 21360 25678 NC_000014.9 scf7180000172471 99.83 True fake: scaffold gap size wrong estimation (local) 64552444 64554154 25912 27632 NC_000014.9 scf7180000172471 99.59 True CONTIG scf7180000172471 27632 correct 50213642 50214572 937 7 NC_000014.9 scf7180000172472 99.89 True fake: scaffold gap size wrong estimation (local) 50208270 50212271 6349 2233 NC_000014.9 scf7180000172472 99.67 True fake: scaffold gap size wrong estimation (local) 50205912 50208093 8582 6400 NC_000014.9 scf7180000172472 99.73 True fake: scaffold gap size wrong estimation (local) 50195652 50205701 18621 8761 NC_000014.9 scf7180000172472 97.58 True fake: scaffold gap size wrong estimation (local) 50194750 50195640 19713 18823 NC_000014.9 scf7180000172472 99.89 True fake: scaffold gap size wrong estimation (local) 50192376 50194419 22044 20063 NC_000014.9 scf7180000172472 96.38 True fake: scaffold gap size wrong estimation (local) 50190097 50192334 24438 22220 NC_000014.9 scf7180000172472 98.97 True fake: scaffold gap size wrong estimation (local) 50185732 50187364 28629 26972 NC_000014.9 scf7180000172472 99.63 True CONTIG scf7180000172472 28629 correct 19115947 19120234 4289 2 NC_000014.9 scf7180000172473 99.79 True relocation, inconsistency = 83204502 102324737 102325608 4290 5161 NC_000014.9 scf7180000172473 100.0 True fake: scaffold gap size wrong estimation (local) 102325756 102327303 5323 6870 NC_000014.9 scf7180000172473 100.0 True fake: scaffold gap size wrong estimation (local) 102327390 102328102 7036 7748 NC_000014.9 scf7180000172473 100.0 True fake: scaffold gap size wrong estimation (local) 102328417 102328998 8098 8679 NC_000014.9 scf7180000172473 99.83 True fake: scaffold gap size wrong estimation (local) 102330576 102336177 9682 15586 NC_000014.9 scf7180000172473 96.81 True fake: scaffold gap size wrong estimation (local) 102337405 102338285 16796 17676 NC_000014.9 scf7180000172473 100.0 True CONTIG scf7180000172473 17676 misassembled 106693784 106694297 523 10 NC_000014.9 scf7180000172474 100.0 True fake: scaffold gap size wrong estimation (local) 106678824 106693093 15837 1669 NC_000014.9 scf7180000172474 99.14 True CONTIG scf7180000172474 15837 correct 106522059 106532777 4 10825 NC_000014.9 scf7180000172475 98.84 True indel: indel (> 5bp) 106533077 106535851 11136 13910 NC_000014.9 scf7180000172475 99.57 True CONTIG scf7180000172475 13910 correct 75182528 75183899 1372 1 NC_000014.9 scf7180000172476 100.0 True fake: scaffold gap size wrong estimation (local) 75180916 75181501 2785 2200 NC_000014.9 scf7180000172476 100.0 True fake: scaffold gap size wrong estimation (local) 75177884 75180393 5797 3361 NC_000014.9 scf7180000172476 96.96 True fake: scaffold gap size wrong estimation (local) 75175623 75177296 8037 6364 NC_000014.9 scf7180000172476 100.0 True fake: scaffold gap size wrong estimation (local) 75167217 75174816 16412 8974 NC_000014.9 scf7180000172476 96.21 True fake: scaffold gap size wrong estimation (local) 75165493 75166954 18171 16710 NC_000014.9 scf7180000172476 99.93 True fake: scaffold gap size wrong estimation (local) 75164612 75165319 18987 18280 NC_000014.9 scf7180000172476 100.0 True CONTIG scf7180000172476 18987 correct 63440943 63445656 5404 627 NC_000014.9 scf7180000172477 99.74 True fake: scaffold gap size wrong estimation (local) 63431232 63440790 15084 5522 NC_000014.9 scf7180000172477 99.82 True fake: scaffold gap size wrong estimation (local) 63429863 63431040 16475 15279 NC_000014.9 scf7180000172477 99.83 True fake: scaffold gap size wrong estimation (local) 63424683 63429668 21572 16576 NC_000014.9 scf7180000172477 99.96 True fake: scaffold gap size wrong estimation (local) 63421085 63424515 25053 21682 NC_000014.9 scf7180000172477 98.26 True fake: scaffold gap size wrong estimation (local) 63409159 63420796 37253 25334 NC_000014.9 scf7180000172477 96.54 True fake: scaffold gap size wrong estimation (local) 63406341 63408985 40044 37400 NC_000014.9 scf7180000172477 99.92 True fake: scaffold gap size wrong estimation (local) 63398888 63406194 47503 40137 NC_000014.9 scf7180000172477 99.88 True CONTIG scf7180000172477 47587 correct 86963489 86964854 3610 2241 NC_000014.9 scf7180000172478 99.71 True CONTIG scf7180000172478 3610 correct 49775897 49778783 3007 209 NC_000014.9 scf7180000172479 95.03 True fake: scaffold gap size wrong estimation (local) 49773848 49775603 5137 3382 NC_000014.9 scf7180000172479 99.83 True fake: scaffold gap size wrong estimation (local) 49769891 49773158 9011 5727 NC_000014.9 scf7180000172479 99.31 True fake: scaffold gap size wrong estimation (local) 49766814 49769717 12074 9110 NC_000014.9 scf7180000172479 99.83 True fake: scaffold gap size wrong estimation (local) 49762992 49766571 15862 12247 NC_000014.9 scf7180000172479 99.16 True fake: scaffold gap size wrong estimation (local) 49761213 49762844 17667 16036 NC_000014.9 scf7180000172479 99.82 True CONTIG scf7180000172479 17670 correct 88056916 88058351 15 1450 NC_000014.9 scf7180000172480 99.44 True fake: scaffold gap size wrong estimation (local) 88059751 88061244 2799 4291 NC_000014.9 scf7180000172480 99.46 True fake: scaffold gap size wrong estimation (local) 88061425 88064521 4477 7574 NC_000014.9 scf7180000172480 99.48 True fake: scaffold gap size wrong estimation (local) 88064697 88077062 7698 20077 NC_000014.9 scf7180000172480 99.84 True CONTIG scf7180000172480 20077 correct 74274057 74274814 779 22 NC_000014.9 scf7180000172481 100.0 True fake: scaffold gap size wrong estimation (local) 74271276 74272204 3605 2677 NC_000014.9 scf7180000172481 100.0 True fake: scaffold gap size wrong estimation (local) 74269441 74270066 5611 4986 NC_000014.9 scf7180000172481 96.81 True CONTIG scf7180000172481 6051 correct 105619314 105619933 841 222 NC_000014.9 scf7180000172482 99.19 True fake: scaffold gap size wrong estimation (local) 105616363 105617213 3573 2723 NC_000014.9 scf7180000172482 98.94 True indel: indel (<= 5bp) 105613934 105616289 6004 3651 NC_000014.9 scf7180000172482 98.18 True relocation, scaffold gap is present, inconsistency = -40938 105650763 105654851 10032 6025 NC_000014.9 scf7180000172482 97.17 True CONTIG scf7180000172482 10686 misassembled 64317393 64318292 900 1 NC_000014.9 scf7180000172483 100.0 True fake: scaffold gap size wrong estimation (local) 64313768 64314671 4768 3856 NC_000014.9 scf7180000172483 99.44 True fake: scaffold gap size wrong estimation (local) 64311664 64313479 6751 4936 NC_000014.9 scf7180000172483 99.89 True fake: scaffold gap size wrong estimation (local) 64310737 64311426 7597 6908 NC_000014.9 scf7180000172483 100.0 True CONTIG scf7180000172483 7597 correct 40862797 40891207 8 28451 NC_000014.9 scf7180000172484 99.15 True fake: scaffold gap size wrong estimation (local) 40891362 40897171 28559 34159 NC_000014.9 scf7180000172484 96.24 True CONTIG scf7180000172484 34395 correct 63628154 63630175 20 2040 NC_000014.9 scf7180000172485 99.85 True fake: scaffold gap size wrong estimation (local) 63630621 63631858 2403 3640 NC_000014.9 scf7180000172485 100.0 True fake: scaffold gap size wrong estimation (local) 63632150 63634201 4010 6061 NC_000014.9 scf7180000172485 99.95 True fake: scaffold gap size wrong estimation (local) 63634891 63636511 6842 8463 NC_000014.9 scf7180000172485 99.63 True CONTIG scf7180000172485 8463 correct 88781977 88782532 557 2 NC_000014.9 scf7180000172486 99.64 True fake: scaffold gap size wrong estimation (local) 88780730 88781818 2025 937 NC_000014.9 scf7180000172486 100.0 True fake: scaffold gap size wrong estimation (local) 88769351 88780128 13338 2569 NC_000014.9 scf7180000172486 99.81 True CONTIG scf7180000172486 13448 correct 96417334 96418325 992 1 NC_000014.9 scf7180000172487 99.9 True fake: scaffold gap size wrong estimation (local) 96415229 96415775 3113 2567 NC_000014.9 scf7180000172487 100.0 True fake: scaffold gap size wrong estimation (local) 96412761 96414761 5545 3545 NC_000014.9 scf7180000172487 100.0 True fake: scaffold gap size wrong estimation (local) 96409554 96412230 8754 6078 NC_000014.9 scf7180000172487 99.85 True fake: scaffold gap size wrong estimation (local) 96407829 96409382 10485 8932 NC_000014.9 scf7180000172487 99.94 True fake: scaffold gap size wrong estimation (local) 96403129 96407579 15048 10646 NC_000014.9 scf7180000172487 96.48 True fake: scaffold gap size wrong estimation (local) 96397519 96403006 20655 15208 NC_000014.9 scf7180000172487 98.76 True fake: scaffold gap size wrong estimation (local) 96396045 96397355 22149 20839 NC_000014.9 scf7180000172487 99.92 True fake: scaffold gap size wrong estimation (local) 96394828 96395670 23178 22336 NC_000014.9 scf7180000172487 99.76 True fake: scaffold gap size wrong estimation (local) 96394020 96394720 24156 23456 NC_000014.9 scf7180000172487 100.0 True fake: scaffold gap size wrong estimation (local) 96389979 96393879 28037 24214 NC_000014.9 scf7180000172487 97.91 True fake: scaffold gap size wrong estimation (local) 96383396 96389207 34569 28787 NC_000014.9 scf7180000172487 99.32 True CONTIG scf7180000172487 34569 correct 43787480 43812273 1 24827 NC_000014.9 scf7180000172488 99.8 True fake: scaffold gap size wrong estimation (local) 43812560 43829334 25036 41736 NC_000014.9 scf7180000172488 99.02 True CONTIG scf7180000172488 41736 correct 105614272 105614946 713 43 NC_000014.9 scf7180000172489 96.89 True relocation, scaffold gap is present, inconsistency = -45535 105654116 105659093 6405 1427 NC_000014.9 scf7180000172489 99.6 True CONTIG scf7180000172489 6405 misassembled 84779998 84780564 1 567 NC_000014.9 scf7180000172490 100.0 True relocation, scaffold gap is present, inconsistency = -382784 84399625 84412938 2412 15770 NC_000014.9 scf7180000172490 99.3 True fake: scaffold gap size wrong estimation (local) 84413400 84414011 16173 16784 NC_000014.9 scf7180000172490 100.0 True CONTIG scf7180000172490 16784 misassembled 106478457 106479015 559 1 NC_000014.9 scf7180000172491 99.82 True fake: scaffold gap size wrong estimation (local) 106476332 106478210 2544 666 NC_000014.9 scf7180000172491 100.0 True fake: scaffold gap size wrong estimation (local) 106474077 106476138 4760 2686 NC_000014.9 scf7180000172491 99.81 True fake: scaffold gap size wrong estimation (local) 106472926 106473496 6200 5630 NC_000014.9 scf7180000172491 100.0 True CONTIG scf7180000172491 6203 correct 53119802 53120555 754 1 NC_000014.9 scf7180000172492 99.47 True fake: scaffold gap size wrong estimation (local) 53117365 53118331 3362 2396 NC_000014.9 scf7180000172492 99.38 True fake: scaffold gap size wrong estimation (local) 53114526 53116222 6172 4476 NC_000014.9 scf7180000172492 99.82 True fake: scaffold gap size wrong estimation (local) 53112412 53113058 8246 7600 NC_000014.9 scf7180000172492 99.85 True CONTIG scf7180000172492 8271 correct 67903132 67905937 2835 1 NC_000014.9 scf7180000172493 99.57 True fake: scaffold gap size wrong estimation (local) 67899321 67902897 6538 2964 NC_000014.9 scf7180000172493 99.89 True fake: scaffold gap size wrong estimation (local) 67897920 67899133 7920 6707 NC_000014.9 scf7180000172493 99.92 True fake: scaffold gap size wrong estimation (local) 67890562 67897673 15184 8079 NC_000014.9 scf7180000172493 99.85 True relocation, inconsistency = 3141461 71039135 71040778 15185 16828 NC_000014.9 scf7180000172493 99.94 True CONTIG scf7180000172493 16828 misassembled 18527396 18527995 1 600 NC_000014.9 scf7180000172494 99.67 True fake: scaffold gap size wrong estimation (local) 18529555 18531572 2197 4214 NC_000014.9 scf7180000172494 99.9 True fake: scaffold gap size wrong estimation (local) 18532044 18532752 4784 5492 NC_000014.9 scf7180000172494 99.44 True fake: scaffold gap size wrong estimation (local) 18535413 18537261 9150 10998 NC_000014.9 scf7180000172494 99.57 True CONTIG scf7180000172494 12591 correct 75132398 75137106 1 4703 NC_000014.9 scf7180000172495 99.72 True fake: scaffold gap size wrong estimation (local) 75137740 75140232 5403 7904 NC_000014.9 scf7180000172495 99.88 True fake: scaffold gap size wrong estimation (local) 75140370 75142917 7925 10545 NC_000014.9 scf7180000172495 99.84 True fake: scaffold gap size wrong estimation (local) 75143107 75143754 10776 11423 NC_000014.9 scf7180000172495 99.85 True relocation, scaffold gap is present, inconsistency = 28657230 103801005 103801703 12142 11444 NC_000014.9 scf7180000172495 99.86 True CONTIG scf7180000172495 12291 misassembled 101815945 101816862 918 1 NC_000014.9 scf7180000172496 100.0 True fake: scaffold gap size wrong estimation (local) 101802418 101815749 14357 1055 NC_000014.9 scf7180000172496 99.53 True fake: scaffold gap size wrong estimation (local) 101793119 101802213 23720 14466 NC_000014.9 scf7180000172496 98.66 True fake: not a misassembly (possible transposable element) 103766204 103766703 24247 23748 NC_000014.9 scf7180000172496 100.0 True fake: not a misassembly (possible transposable element) 101791108 101793003 26312 24418 NC_000014.9 scf7180000172496 99.95 True relocation, scaffold gap is present, inconsistency = -1973124 103763107 103764070 27437 26474 NC_000014.9 scf7180000172496 100.0 True CONTIG scf7180000172496 27437 misassembled 67356453 67362037 1 5585 NC_000014.9 scf7180000172497 99.98 True fake: scaffold gap size wrong estimation (local) 67362171 67372574 5711 16019 NC_000014.9 scf7180000172497 99.02 True fake: scaffold gap size wrong estimation (local) 67372755 67379651 16148 23039 NC_000014.9 scf7180000172497 99.87 True fake: scaffold gap size wrong estimation (local) 67379859 67396958 23154 40292 NC_000014.9 scf7180000172497 99.82 True fake: scaffold gap size wrong estimation (local) 67397137 67399444 40458 42724 NC_000014.9 scf7180000172497 98.18 True fake: scaffold gap size wrong estimation (local) 67399745 67405112 43013 48379 NC_000014.9 scf7180000172497 99.98 True fake: scaffold gap size wrong estimation (local) 67405246 67408134 48534 51438 NC_000014.9 scf7180000172497 99.51 True fake: scaffold gap size wrong estimation (local) 67408341 67419619 51572 62830 NC_000014.9 scf7180000172497 99.58 True fake: scaffold gap size wrong estimation (local) 67419840 67422834 63021 66015 NC_000014.9 scf7180000172497 99.97 True fake: scaffold gap size wrong estimation (local) 67422975 67431137 66257 74195 NC_000014.9 scf7180000172497 96.61 True fake: scaffold gap size wrong estimation (local) 67431415 67444853 74463 87889 NC_000014.9 scf7180000172497 99.72 True fake: scaffold gap size wrong estimation (local) 67445601 67448139 88588 91126 NC_000014.9 scf7180000172497 100.0 True fake: scaffold gap size wrong estimation (local) 67448318 67449850 91293 92825 NC_000014.9 scf7180000172497 99.93 True CONTIG scf7180000172497 92825 correct 23074491 23075738 512 1787 NC_000014.9 scf7180000172498 99.36 True fake: scaffold gap size wrong estimation (local) 23075921 23082441 1967 8493 NC_000014.9 scf7180000172498 99.86 True fake: scaffold gap size wrong estimation (local) 23082703 23083543 8624 9593 NC_000014.9 scf7180000172498 99.51 True fake: scaffold gap size wrong estimation (local) 23083715 23088932 9836 14975 NC_000014.9 scf7180000172498 98.24 True fake: scaffold gap size wrong estimation (local) 23089146 23091030 15167 17052 NC_000014.9 scf7180000172498 99.95 True fake: scaffold gap size wrong estimation (local) 23091166 23096267 17113 22205 NC_000014.9 scf7180000172498 99.76 True fake: scaffold gap size wrong estimation (local) 23096577 23103443 22411 29297 NC_000014.9 scf7180000172498 99.88 True fake: scaffold gap size wrong estimation (local) 23103581 23105760 29393 31569 NC_000014.9 scf7180000172498 99.82 True fake: scaffold gap size wrong estimation (local) 23105992 23107663 31756 33437 NC_000014.9 scf7180000172498 99.64 True fake: scaffold gap size wrong estimation (local) 23108881 23111581 34569 37279 NC_000014.9 scf7180000172498 99.93 True fake: scaffold gap size wrong estimation (local) 23111668 23122580 37428 48361 NC_000014.9 scf7180000172498 99.79 True CONTIG scf7180000172498 50433 correct 70466789 70467290 542 41 NC_000014.9 scf7180000172499 100.0 True fake: scaffold gap size wrong estimation (local) 70459267 70465880 8137 1556 NC_000014.9 scf7180000172499 98.91 True CONTIG scf7180000172499 8137 correct 75143934 75144921 11 998 NC_000014.9 scf7180000172500 99.9 True fake: scaffold gap size wrong estimation (local) 75145713 75147199 1920 3410 NC_000014.9 scf7180000172500 99.66 True fake: scaffold gap size wrong estimation (local) 75147468 75151018 3671 7292 NC_000014.9 scf7180000172500 98.33 True fake: scaffold gap size wrong estimation (local) 75151497 75153781 7692 9985 NC_000014.9 scf7180000172500 99.26 True fake: scaffold gap size wrong estimation (local) 75155175 75156691 11250 12766 NC_000014.9 scf7180000172500 100.0 True local misassembly 75156912 75157602 12767 13457 NC_000014.9 scf7180000172500 96.67 True fake: scaffold gap size wrong estimation (local) 75157881 75158539 14080 14738 NC_000014.9 scf7180000172500 100.0 True local misassembly 75158815 75160885 14739 16809 NC_000014.9 scf7180000172500 98.94 True fake: scaffold gap size wrong estimation (local) 75162191 75163489 17954 19252 NC_000014.9 scf7180000172500 100.0 True fake: scaffold gap size wrong estimation (local) 75163577 75164492 19680 20595 NC_000014.9 scf7180000172500 100.0 True CONTIG scf7180000172500 20595 correct 88410337 88411179 1 843 NC_000014.9 scf7180000172501 99.76 True fake: scaffold gap size wrong estimation (local) 88413038 88413844 2623 3429 NC_000014.9 scf7180000172501 99.88 True CONTIG scf7180000172501 3429 correct 69892929 69894120 1558 367 NC_000014.9 scf7180000172502 99.92 True relocation, scaffold gap is present, inconsistency = 5162803 75056946 75057718 1581 2353 NC_000014.9 scf7180000172502 100.0 True local misassembly 75055362 75057187 2696 4521 NC_000014.9 scf7180000172502 100.0 True CONTIG scf7180000172502 4521 misassembled 70467399 70468467 1069 1 NC_000014.9 scf7180000172503 100.0 True CONTIG scf7180000172503 3049 correct 46267184 46274887 1469 9172 NC_000014.9 scf7180000172504 99.86 True fake: scaffold gap size wrong estimation (local) 46275177 46283948 9412 18187 NC_000014.9 scf7180000172504 99.78 True fake: scaffold gap size wrong estimation (local) 46285127 46286352 19303 20528 NC_000014.9 scf7180000172504 100.0 True indel: stretch of mismatches 46286420 46294233 20596 28334 NC_000014.9 scf7180000172504 98.98 True fake: not a misassembly (possible transposable element) 53734170 53735223 29408 28355 NC_000014.9 scf7180000172504 100.0 True fake: not a misassembly (possible transposable element) 46294032 46298435 29409 33825 NC_000014.9 scf7180000172504 99.89 True fake: not a misassembly (possible transposable element) 82184081 82185328 33826 35073 NC_000014.9 scf7180000172504 100.0 True fake: not a misassembly (possible transposable element) 46299096 46301057 35094 37055 NC_000014.9 scf7180000172504 100.0 True CONTIG scf7180000172504 37055 correct 42795809 42796905 2 1098 NC_000014.9 scf7180000172505 99.73 True fake: scaffold gap size wrong estimation (local) 42797893 42799977 2067 4150 NC_000014.9 scf7180000172505 98.99 True fake: scaffold gap size wrong estimation (local) 42800135 42811884 4355 16209 NC_000014.9 scf7180000172505 98.72 True CONTIG scf7180000172505 16209 correct 66614812 66615708 1 897 NC_000014.9 scf7180000172506 99.67 True fake: scaffold gap size wrong estimation (local) 66615966 66616676 1291 2001 NC_000014.9 scf7180000172506 100.0 True fake: scaffold gap size wrong estimation (local) 66616967 66620864 2251 6148 NC_000014.9 scf7180000172506 99.95 True CONTIG scf7180000172506 6413 correct 88782892 88784308 1787 371 NC_000014.9 scf7180000172507 100.0 True fake: scaffold gap size wrong estimation (local) 88780158 88780807 3990 3341 NC_000014.9 scf7180000172507 100.0 True CONTIG scf7180000172507 3990 correct 34822145 34823158 1014 1 NC_000014.9 scf7180000172508 99.9 True fake: scaffold gap size wrong estimation (local) 34819162 34821782 3839 1326 NC_000014.9 scf7180000172508 95.73 True fake: scaffold gap size wrong estimation (local) 34816334 34818893 6714 4098 NC_000014.9 scf7180000172508 97.84 True fake: scaffold gap size wrong estimation (local) 34815046 34816081 7971 6936 NC_000014.9 scf7180000172508 100.0 True fake: scaffold gap size wrong estimation (local) 34813945 34814891 9083 8137 NC_000014.9 scf7180000172508 99.79 True fake: scaffold gap size wrong estimation (local) 34808329 34813202 14871 9998 NC_000014.9 scf7180000172508 99.96 True CONTIG scf7180000172508 15461 correct 67123891 67125530 34 1701 NC_000014.9 scf7180000172509 99.43 True fake: scaffold gap size wrong estimation (local) 67125766 67126644 2181 3059 NC_000014.9 scf7180000172509 100.0 True fake: scaffold gap size wrong estimation (local) 67127351 67128290 3381 4320 NC_000014.9 scf7180000172509 100.0 True fake: scaffold gap size wrong estimation (local) 67128968 67134948 5037 11016 NC_000014.9 scf7180000172509 99.92 True fake: scaffold gap size wrong estimation (local) 67135220 67137226 11297 13303 NC_000014.9 scf7180000172509 100.0 True fake: scaffold gap size wrong estimation (local) 67137531 67138894 13631 14994 NC_000014.9 scf7180000172509 100.0 True fake: scaffold gap size wrong estimation (local) 67139130 67148577 15135 24558 NC_000014.9 scf7180000172509 99.42 True fake: scaffold gap size wrong estimation (local) 67149219 67150186 25146 26113 NC_000014.9 scf7180000172509 97.93 True fake: scaffold gap size wrong estimation (local) 67150463 67153129 26322 28983 NC_000014.9 scf7180000172509 99.62 True CONTIG scf7180000172509 28983 correct 74777561 74779039 225 1703 NC_000014.9 scf7180000172510 99.73 True fake: scaffold gap size wrong estimation (local) 74780025 74788127 2724 10764 NC_000014.9 scf7180000172510 99.04 True fake: scaffold gap size wrong estimation (local) 74788391 74796988 11004 19626 NC_000014.9 scf7180000172510 99.88 True fake: scaffold gap size wrong estimation (local) 74797191 74801996 19761 24566 NC_000014.9 scf7180000172510 99.94 True fake: scaffold gap size wrong estimation (local) 74802214 74805716 24734 28161 NC_000014.9 scf7180000172510 96.36 True fake: scaffold gap size wrong estimation (local) 74806179 74808547 28647 30997 NC_000014.9 scf7180000172510 98.98 True fake: scaffold gap size wrong estimation (local) 74808809 74814108 31319 36630 NC_000014.9 scf7180000172510 99.62 True fake: scaffold gap size wrong estimation (local) 74814330 74815140 36819 37629 NC_000014.9 scf7180000172510 99.88 True fake: scaffold gap size wrong estimation (local) 74815567 74832560 38076 55069 NC_000014.9 scf7180000172510 99.84 True fake: scaffold gap size wrong estimation (local) 74832690 74842721 55187 65213 NC_000014.9 scf7180000172510 99.56 True fake: scaffold gap size wrong estimation (local) 74842845 74850389 65307 72778 NC_000014.9 scf7180000172510 98.62 True fake: scaffold gap size wrong estimation (local) 74850572 74851568 73013 74036 NC_000014.9 scf7180000172510 98.8 True fake: scaffold gap size wrong estimation (local) 74851995 74864603 74133 87151 NC_000014.9 scf7180000172510 96.99 True CONTIG scf7180000172510 87193 correct 18420051 18421997 1899 1 NC_000014.9 scf7180000172511 97.53 True fake: scaffold gap size wrong estimation (local) 18413677 18419614 8198 2261 NC_000014.9 scf7180000172511 99.9 True fake: scaffold gap size wrong estimation (local) 18403542 18413582 18293 8288 NC_000014.9 scf7180000172511 99.57 True fake: scaffold gap size wrong estimation (local) 18402444 18403319 19468 18593 NC_000014.9 scf7180000172511 100.0 True CONTIG scf7180000172511 19468 correct 49759486 49760593 1108 1 NC_000014.9 scf7180000172512 97.83 True fake: scaffold gap size wrong estimation (local) 49756448 49757228 4134 3354 NC_000014.9 scf7180000172512 100.0 True fake: scaffold gap size wrong estimation (local) 49754090 49756215 6579 4454 NC_000014.9 scf7180000172512 99.91 True fake: scaffold gap size wrong estimation (local) 49749067 49753862 11586 6763 NC_000014.9 scf7180000172512 99.71 True fake: scaffold gap size wrong estimation (local) 49748008 49748846 12815 11977 NC_000014.9 scf7180000172512 100.0 True CONTIG scf7180000172512 12815 correct 50187625 50188224 1110 511 NC_000014.9 scf7180000172513 100.0 True fake: scaffold gap size wrong estimation (local) 50184887 50185677 3721 2931 NC_000014.9 scf7180000172513 100.0 True CONTIG scf7180000172513 3721 correct 68029321 68030188 868 1 NC_000014.9 scf7180000172514 100.0 True relocation, scaffold gap is present, inconsistency = 80096 67940263 67948688 9759 1405 NC_000014.9 scf7180000172514 98.91 True fake: scaffold gap size wrong estimation (local) 67931707 67939978 18525 9955 NC_000014.9 scf7180000172514 96.73 True fake: scaffold gap size wrong estimation (local) 67925534 67930945 24686 19213 NC_000014.9 scf7180000172514 95.27 True fake: scaffold gap size wrong estimation (local) 67923424 67925394 26708 24738 NC_000014.9 scf7180000172514 98.07 True fake: scaffold gap size wrong estimation (local) 67912927 67922529 37124 27529 NC_000014.9 scf7180000172514 99.5 True fake: scaffold gap size wrong estimation (local) 67910435 67912757 39956 37603 NC_000014.9 scf7180000172514 99.31 True fake: scaffold gap size wrong estimation (local) 67907152 67910325 43294 40121 NC_000014.9 scf7180000172514 100.0 True fake: scaffold gap size wrong estimation (local) 67905736 67906619 44680 43797 NC_000014.9 scf7180000172514 100.0 True CONTIG scf7180000172514 44680 misassembled 102336206 102337331 1 1129 NC_000014.9 scf7180000172515 99.73 True fake: scaffold gap size wrong estimation (local) 102338554 102339488 2550 3484 NC_000014.9 scf7180000172515 100.0 True fake: scaffold gap size wrong estimation (local) 102341070 102342753 4978 6661 NC_000014.9 scf7180000172515 99.94 True fake: scaffold gap size wrong estimation (local) 102344911 102345990 8605 9684 NC_000014.9 scf7180000172515 99.72 True CONTIG scf7180000172515 9692 correct 74970164 74972043 2020 3899 NC_000014.9 scf7180000172516 99.89 True fake: scaffold gap size wrong estimation (local) 74972496 74983881 4343 15744 NC_000014.9 scf7180000172516 99.94 True fake: scaffold gap size wrong estimation (local) 74984057 74989578 15868 21434 NC_000014.9 scf7180000172516 99.33 True fake: scaffold gap size wrong estimation (local) 74989746 74990836 21663 22734 NC_000014.9 scf7180000172516 97.67 True fake: scaffold gap size wrong estimation (local) 74990920 74991448 22872 23400 NC_000014.9 scf7180000172516 100.0 True fake: scaffold gap size wrong estimation (local) 74991608 74994316 23478 26183 NC_000014.9 scf7180000172516 99.67 True fake: scaffold gap size wrong estimation (local) 74995801 74996693 27433 28325 NC_000014.9 scf7180000172516 99.89 True fake: scaffold gap size wrong estimation (local) 74997760 74999668 29348 31292 NC_000014.9 scf7180000172516 98.81 True fake: scaffold gap size wrong estimation (local) 75000782 75005183 32302 36693 NC_000014.9 scf7180000172516 99.7 True fake: scaffold gap size wrong estimation (local) 75005378 75010946 36803 42369 NC_000014.9 scf7180000172516 99.89 True CONTIG scf7180000172516 42409 correct 102573251 102574129 3345 2467 NC_000014.9 scf7180000172517 99.43 True fake: scaffold gap size wrong estimation (local) 102570716 102571853 5993 4856 NC_000014.9 scf7180000172517 100.0 True fake: scaffold gap size wrong estimation (local) 102567993 102569094 8593 7489 NC_000014.9 scf7180000172517 99.55 True CONTIG scf7180000172517 10290 correct 75105318 75116644 2442 13746 NC_000014.9 scf7180000172518 98.48 True local misassembly 75116828 75122609 13811 19592 NC_000014.9 scf7180000172518 99.84 True fake: scaffold gap size wrong estimation (local) 75123433 75124776 20338 21681 NC_000014.9 scf7180000172518 99.85 True fake: scaffold gap size wrong estimation (local) 75124953 75127589 21888 24524 NC_000014.9 scf7180000172518 99.81 True indel: indel (> 5bp) 75127608 75129508 24525 26425 NC_000014.9 scf7180000172518 98.05 True local misassembly 75129509 75130234 26970 27695 NC_000014.9 scf7180000172518 99.59 True fake: scaffold gap size wrong estimation (local) 75130729 75132175 28014 29460 NC_000014.9 scf7180000172518 98.55 True CONTIG scf7180000172518 29475 correct 37096418 37097047 630 1 NC_000014.9 scf7180000172519 99.84 True relocation, inconsistency = 43339675 80436723 80437564 631 1472 NC_000014.9 scf7180000172519 100.0 True CONTIG scf7180000172519 3638 misassembled 73667294 73668754 3 1469 NC_000014.9 scf7180000172520 99.93 True fake: scaffold gap size wrong estimation (local) 73669546 73670718 2465 3637 NC_000014.9 scf7180000172520 100.0 True local misassembly 73670951 73672360 3638 5047 NC_000014.9 scf7180000172520 95.67 True fake: scaffold gap size wrong estimation (local) 73672616 73675761 5356 8513 NC_000014.9 scf7180000172520 97.08 True fake: scaffold gap size wrong estimation (local) 73676145 73676970 8849 9704 NC_000014.9 scf7180000172520 98.09 True fake: scaffold gap size wrong estimation (local) 73677973 73681339 10506 13990 NC_000014.9 scf7180000172520 99.43 True fake: scaffold gap size wrong estimation (local) 73682536 73685475 15017 17982 NC_000014.9 scf7180000172520 98.59 True fake: scaffold gap size wrong estimation (local) 73686480 73687646 19050 20216 NC_000014.9 scf7180000172520 100.0 True fake: scaffold gap size wrong estimation (local) 73689222 73689849 21875 22502 NC_000014.9 scf7180000172520 99.84 True CONTIG scf7180000172520 22502 correct 106169145 106169771 1092 466 NC_000014.9 scf7180000172521 99.2 True fake: scaffold gap size wrong estimation (local) 106165969 106167823 4237 2382 NC_000014.9 scf7180000172521 99.52 True fake: scaffold gap size wrong estimation (local) 106163295 106164887 6906 5314 NC_000014.9 scf7180000172521 99.75 True CONTIG scf7180000172521 7019 correct 55228226 55228914 689 1 NC_000014.9 scf7180000172522 99.85 True fake: scaffold gap size wrong estimation (local) 55221314 55227239 7781 1854 NC_000014.9 scf7180000172522 99.93 True fake: scaffold gap size wrong estimation (local) 55215050 55221159 14072 7941 NC_000014.9 scf7180000172522 98.73 True fake: scaffold gap size wrong estimation (local) 55212947 55214792 16235 14465 NC_000014.9 scf7180000172522 95.1 True CONTIG scf7180000172522 16264 correct 55254194 55256318 2161 37 NC_000014.9 scf7180000172523 99.91 True fake: scaffold gap size wrong estimation (local) 55252374 55253123 3894 3145 NC_000014.9 scf7180000172523 99.6 True fake: scaffold gap size wrong estimation (local) 55239046 55251923 16954 4163 NC_000014.9 scf7180000172523 98.84 True fake: scaffold gap size wrong estimation (local) 55237386 55238978 18648 17056 NC_000014.9 scf7180000172523 99.94 True fake: scaffold gap size wrong estimation (local) 55235460 55237264 20591 18770 NC_000014.9 scf7180000172523 98.67 True CONTIG scf7180000172523 20591 correct 18681694 18682780 7 1117 NC_000014.9 scf7180000172524 99.45 True fake: scaffold gap size wrong estimation (local) 18682709 18683277 1405 1973 NC_000014.9 scf7180000172524 100.0 True local misassembly 18683515 18684713 1974 3172 NC_000014.9 scf7180000172524 96.33 True indel: indel (> 5bp) 18684732 18685245 3173 3686 NC_000014.9 scf7180000172524 96.11 True fake: scaffold gap size wrong estimation (local) 18685571 18686286 4045 4760 NC_000014.9 scf7180000172524 100.0 True fake: scaffold gap size wrong estimation (local) 18686510 18689782 4941 8213 NC_000014.9 scf7180000172524 99.91 True fake: scaffold gap size wrong estimation (local) 18689860 18690843 8316 9299 NC_000014.9 scf7180000172524 100.0 True fake: scaffold gap size wrong estimation (local) 18691397 18698002 9817 16466 NC_000014.9 scf7180000172524 99.62 True CONTIG scf7180000172524 16466 correct 64640367 64641428 1628 564 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64633189 64640239 8763 1774 NC_000014.9 scf7180000172525 99.04 True fake: scaffold gap size wrong estimation (local) 64631809 64632907 10172 9074 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64629808 64631716 12181 10251 NC_000014.9 scf7180000172525 99.84 True fake: scaffold gap size wrong estimation (local) 64627956 64629602 13987 12341 NC_000014.9 scf7180000172525 99.94 True fake: scaffold gap size wrong estimation (local) 64627151 64627682 14621 14090 NC_000014.9 scf7180000172525 100.0 True indel: indel (<= 5bp) 64626576 64627147 15193 14622 NC_000014.9 scf7180000172525 97.73 True fake: scaffold gap size wrong estimation (local) 64624882 64626304 17099 15677 NC_000014.9 scf7180000172525 98.59 True fake: scaffold gap size wrong estimation (local) 64620219 64624509 21699 17409 NC_000014.9 scf7180000172525 99.98 True fake: scaffold gap size wrong estimation (local) 64618071 64619954 23810 21927 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64608711 64617840 33131 24012 NC_000014.9 scf7180000172525 99.74 True fake: scaffold gap size wrong estimation (local) 64607523 64608120 34344 33747 NC_000014.9 scf7180000172525 99.67 True fake: scaffold gap size wrong estimation (local) 64604682 64607265 37174 34566 NC_000014.9 scf7180000172525 99.69 True fake: scaffold gap size wrong estimation (local) 64602759 64604523 39070 37308 NC_000014.9 scf7180000172525 99.89 True fake: scaffold gap size wrong estimation (local) 64591559 64602601 50753 39190 NC_000014.9 scf7180000172525 95.68 True fake: scaffold gap size wrong estimation (local) 64588834 64591234 53401 51001 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64587734 64588572 54864 53974 NC_000014.9 scf7180000172525 96.33 True fake: scaffold gap size wrong estimation (local) 64586066 64587411 56237 54892 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64584075 64585328 58323 57070 NC_000014.9 scf7180000172525 99.52 True fake: scaffold gap size wrong estimation (local) 64580077 64581123 61893 60847 NC_000014.9 scf7180000172525 100.0 True fake: scaffold gap size wrong estimation (local) 64578032 64578688 64174 63518 NC_000014.9 scf7180000172525 99.85 True CONTIG scf7180000172525 64176 correct 104813241 104814697 1457 1 NC_000014.9 scf7180000172526 99.79 True fake: scaffold gap size wrong estimation (local) 104809741 104812974 5078 1737 NC_000014.9 scf7180000172526 95.11 True fake: scaffold gap size wrong estimation (local) 104808415 104808984 6439 5870 NC_000014.9 scf7180000172526 99.82 True local misassembly 104806615 104807616 7441 6440 NC_000014.9 scf7180000172526 100.0 True CONTIG scf7180000172526 7443 correct 63608984 63609594 944 334 NC_000014.9 scf7180000172527 100.0 True fake: scaffold gap size wrong estimation (local) 63608133 63608690 1892 1335 NC_000014.9 scf7180000172527 100.0 True fake: scaffold gap size wrong estimation (local) 63605673 63607634 4287 2231 NC_000014.9 scf7180000172527 95.83 True indel: indel (<= 5bp) 63602677 63605583 7234 4375 NC_000014.9 scf7180000172527 98.3 True fake: scaffold gap size wrong estimation (local) 63597299 63602453 12617 7468 NC_000014.9 scf7180000172527 99.84 True fake: scaffold gap size wrong estimation (local) 63595698 63596306 13975 13367 NC_000014.9 scf7180000172527 100.0 True CONTIG scf7180000172527 13975 correct 102312572 102313071 22 521 NC_000014.9 scf7180000172528 100.0 True fake: scaffold gap size wrong estimation (local) 102313553 102315771 1114 3332 NC_000014.9 scf7180000172528 99.91 True fake: scaffold gap size wrong estimation (local) 102316339 102318478 3889 6057 NC_000014.9 scf7180000172528 99.49 True CONTIG scf7180000172528 6109 correct 49730899 49731546 838 1485 NC_000014.9 scf7180000172529 99.85 True fake: scaffold gap size wrong estimation (local) 49732323 49733599 2100 3377 NC_000014.9 scf7180000172529 99.53 True indel: indel (> 5bp) 49733646 49735898 3430 5682 NC_000014.9 scf7180000172529 99.69 True fake: scaffold gap size wrong estimation (local) 49735948 49738050 5759 7889 NC_000014.9 scf7180000172529 99.48 True fake: scaffold gap size wrong estimation (local) 49738537 49740372 8347 10182 NC_000014.9 scf7180000172529 98.86 True indel: indel (<= 5bp) 49740611 49741328 10418 11135 NC_000014.9 scf7180000172529 100.0 True local misassembly 49741473 49742583 11136 12246 NC_000014.9 scf7180000172529 98.02 True fake: scaffold gap size wrong estimation (local) 49743401 49746964 13066 16618 NC_000014.9 scf7180000172529 99.64 True CONTIG scf7180000172529 16618 correct 96464556 96465217 1012 351 NC_000014.9 scf7180000172530 100.0 True fake: scaffold gap size wrong estimation (local) 96459311 96463428 6518 2198 NC_000014.9 scf7180000172530 95.72 True fake: scaffold gap size wrong estimation (local) 96457324 96458492 8440 7272 NC_000014.9 scf7180000172530 100.0 True fake: scaffold gap size wrong estimation (local) 96455110 96457064 10668 8692 NC_000014.9 scf7180000172530 99.85 True fake: scaffold gap size wrong estimation (local) 96450439 96454954 15252 10867 NC_000014.9 scf7180000172530 96.95 True CONTIG scf7180000172530 15252 correct 67965768 67967047 1 1280 NC_000014.9 scf7180000172531 100.0 True fake: scaffold gap size wrong estimation (local) 67967701 67976355 1923 10577 NC_000014.9 scf7180000172531 99.98 True CONTIG scf7180000172531 10627 correct 35730869 35733185 2316 1 NC_000014.9 scf7180000172532 99.65 True fake: scaffold gap size wrong estimation (local) 35720023 35730617 13157 2548 NC_000014.9 scf7180000172532 99.72 True fake: scaffold gap size wrong estimation (local) 35717424 35719863 15709 13307 NC_000014.9 scf7180000172532 98.38 True fake: scaffold gap size wrong estimation (local) 35716401 35717243 16696 15854 NC_000014.9 scf7180000172532 100.0 True fake: scaffold gap size wrong estimation (local) 35714101 35716193 19097 17005 NC_000014.9 scf7180000172532 100.0 True fake: scaffold gap size wrong estimation (local) 35712261 35713905 20956 19312 NC_000014.9 scf7180000172532 100.0 True CONTIG scf7180000172532 20956 correct 75799441 75813361 169 13996 NC_000014.9 scf7180000172533 99.23 True CONTIG scf7180000172533 13996 correct 25336113 25337348 1 1236 NC_000014.9 scf7180000172534 99.76 True fake: scaffold gap size wrong estimation (local) 25339234 25340032 2852 3650 NC_000014.9 scf7180000172534 99.87 True fake: scaffold gap size wrong estimation (local) 25340640 25341170 3916 4446 NC_000014.9 scf7180000172534 100.0 True fake: scaffold gap size wrong estimation (local) 25342264 25343435 5584 6755 NC_000014.9 scf7180000172534 99.74 True fake: scaffold gap size wrong estimation (local) 25343687 25344194 6887 7394 NC_000014.9 scf7180000172534 99.8 True fake: scaffold gap size wrong estimation (local) 25344461 25360469 7780 23786 NC_000014.9 scf7180000172534 99.87 True fake: scaffold gap size wrong estimation (local) 25361288 25364798 24459 28047 NC_000014.9 scf7180000172534 99.57 True CONTIG scf7180000172534 28047 correct 34402093 34402769 1655 2331 NC_000014.9 scf7180000172535 99.85 True fake: scaffold gap size wrong estimation (local) 34403181 34407077 2783 6660 NC_000014.9 scf7180000172535 98.58 True fake: scaffold gap size wrong estimation (local) 34407245 34411350 6935 11034 NC_000014.9 scf7180000172535 99.46 True CONTIG scf7180000172535 13479 correct 21813186 21813867 1275 594 NC_000014.9 scf7180000172536 99.41 True fake: scaffold gap size wrong estimation (local) 21806971 21813040 7478 1406 NC_000014.9 scf7180000172536 99.7 True CONTIG scf7180000172536 8028 correct 76634419 76635284 1 861 NC_000014.9 scf7180000172537 98.15 True fake: scaffold gap size wrong estimation (local) 76636064 76637262 1894 3092 NC_000014.9 scf7180000172537 99.33 True fake: scaffold gap size wrong estimation (local) 76637416 76647098 3144 12847 NC_000014.9 scf7180000172537 99.62 True fake: scaffold gap size wrong estimation (local) 76647098 76653533 12934 19205 NC_000014.9 scf7180000172537 96.62 True fake: scaffold gap size wrong estimation (local) 76653733 76662434 19319 27929 NC_000014.9 scf7180000172537 98.9 True fake: scaffold gap size wrong estimation (local) 76662699 76666378 28093 31789 NC_000014.9 scf7180000172537 99.57 True fake: scaffold gap size wrong estimation (local) 76666419 76669544 31830 34943 NC_000014.9 scf7180000172537 99.13 True fake: scaffold gap size wrong estimation (local) 76669770 76672450 35177 37857 NC_000014.9 scf7180000172537 99.74 True fake: scaffold gap size wrong estimation (local) 76673072 76675990 38475 41393 NC_000014.9 scf7180000172537 99.49 True local misassembly 76676180 76677344 42268 43432 NC_000014.9 scf7180000172537 97.94 True indel: indel (> 5bp) 76677706 76678217 43783 44294 NC_000014.9 scf7180000172537 99.8 True CONTIG scf7180000172537 46485 correct 63828527 63830483 4304 2333 NC_000014.9 scf7180000172538 99.74 True CONTIG scf7180000172538 6701 correct 105689643 105691714 2064 1 NC_000014.9 scf7180000172539 99.13 True fake: scaffold gap size wrong estimation (local) 105688605 105689134 3252 2723 NC_000014.9 scf7180000172539 99.62 True relocation, scaffold gap is present, inconsistency = 119969 105565509 105568290 6379 3598 NC_000014.9 scf7180000172539 99.42 True fake: scaffold gap size wrong estimation (local) 105564190 105565161 8050 7079 NC_000014.9 scf7180000172539 99.69 True local misassembly 105561439 105563848 10460 8051 NC_000014.9 scf7180000172539 99.92 True indel: indel (<= 5bp) 105559801 105561438 12099 10462 NC_000014.9 scf7180000172539 100.0 True indel: indel (> 5bp) 105558732 105559758 13126 12100 NC_000014.9 scf7180000172539 99.9 True CONTIG scf7180000172539 13378 misassembled 80041329 80041836 989 482 NC_000014.9 scf7180000172540 99.8 True fake: scaffold gap size wrong estimation (local) 80038757 80040392 3825 2251 NC_000014.9 scf7180000172540 95.11 True fake: scaffold gap size wrong estimation (local) 80034696 80038170 7854 4380 NC_000014.9 scf7180000172540 99.86 True fake: scaffold gap size wrong estimation (local) 80033715 80034413 8642 7944 NC_000014.9 scf7180000172540 100.0 True CONTIG scf7180000172540 8642 correct 105631746 105632539 920 127 NC_000014.9 scf7180000172541 99.62 True fake: not a misassembly (possible transposable element) 105645721 105649278 5686 2145 NC_000014.9 scf7180000172541 96.98 True fake: not a misassembly (possible transposable element) 105625019 105625815 7467 6671 NC_000014.9 scf7180000172541 98.49 True CONTIG scf7180000172541 7472 correct 36411624 36412326 1740 1038 NC_000014.9 scf7180000172542 98.86 True fake: scaffold gap size wrong estimation (local) 36400974 36410786 12286 2538 NC_000014.9 scf7180000172542 98.83 True fake: scaffold gap size wrong estimation (local) 36395548 36400815 17688 12421 NC_000014.9 scf7180000172542 99.91 True fake: scaffold gap size wrong estimation (local) 36392500 36395178 20741 17999 NC_000014.9 scf7180000172542 99.96 True fake: scaffold gap size wrong estimation (local) 36380492 36392368 32644 20784 NC_000014.9 scf7180000172542 99.77 True CONTIG scf7180000172542 32644 correct 24452560 24453118 1 559 NC_000014.9 scf7180000172543 99.46 True fake: scaffold gap size wrong estimation (local) 24453706 24462394 1190 9839 NC_000014.9 scf7180000172543 98.63 True fake: scaffold gap size wrong estimation (local) 24462853 24465137 10223 12491 NC_000014.9 scf7180000172543 98.63 True fake: scaffold gap size wrong estimation (local) 24465347 24470583 12717 18201 NC_000014.9 scf7180000172543 95.39 True CONTIG scf7180000172543 18203 correct 67175270 67175959 684 1 NC_000014.9 scf7180000172544 96.81 True fake: scaffold gap size wrong estimation (local) 67164165 67174128 11126 1375 NC_000014.9 scf7180000172544 97.59 True fake: scaffold gap size wrong estimation (local) 67158208 67164017 17139 11331 NC_000014.9 scf7180000172544 99.98 True indel: stretch of mismatches 67153030 67158162 22356 17185 NC_000014.9 scf7180000172544 99.86 True relocation, inconsistency = 38161072 105319235 105320007 22357 23129 NC_000014.9 scf7180000172544 99.88 True CONTIG scf7180000172544 23129 misassembled 34799871 34801327 404 1860 NC_000014.9 scf7180000172545 98.63 True fake: scaffold gap size wrong estimation (local) 34801910 34804157 2530 4695 NC_000014.9 scf7180000172545 95.97 True fake: scaffold gap size wrong estimation (local) 34804251 34806509 4860 7118 NC_000014.9 scf7180000172545 99.87 True CONTIG scf7180000172545 7148 correct 55110831 55111807 388 1364 NC_000014.9 scf7180000172546 97.95 True indel: indel (> 5bp) 55111843 55112384 1365 1906 NC_000014.9 scf7180000172546 96.13 True fake: scaffold gap size wrong estimation (local) 55113091 55115860 2687 5386 NC_000014.9 scf7180000172546 97.31 True fake: scaffold gap size wrong estimation (local) 55115942 55117281 5576 6915 NC_000014.9 scf7180000172546 99.93 True fake: scaffold gap size wrong estimation (local) 55117477 55124379 7053 13972 NC_000014.9 scf7180000172546 99.43 True fake: scaffold gap size wrong estimation (local) 55124674 55126688 14653 16667 NC_000014.9 scf7180000172546 98.96 True CONTIG scf7180000172546 16667 correct 34415409 34417942 2163 4696 NC_000014.9 scf7180000172547 99.96 True fake: scaffold gap size wrong estimation (local) 34417943 34418647 4869 5573 NC_000014.9 scf7180000172547 100.0 True fake: scaffold gap size wrong estimation (local) 34418648 34422470 5585 9407 NC_000014.9 scf7180000172547 99.74 True indel: indel (> 5bp) 34422504 34424163 9408 11067 NC_000014.9 scf7180000172547 98.8 True indel: indel (> 5bp) 34424229 34427327 11068 14166 NC_000014.9 scf7180000172547 99.29 True fake: scaffold gap size wrong estimation (local) 34427328 34427922 14299 14893 NC_000014.9 scf7180000172547 99.83 True fake: scaffold gap size wrong estimation (local) 34427923 34428763 15407 16247 NC_000014.9 scf7180000172547 100.0 True indel: indel (> 5bp) 34428764 34431490 16255 18981 NC_000014.9 scf7180000172547 99.49 True fake: scaffold gap size wrong estimation (local) 34431578 34432170 19170 19759 NC_000014.9 scf7180000172547 99.49 True CONTIG scf7180000172547 19759 correct CONTIG scf7180000172548 5535 unaligned 35623068 35623823 17 772 NC_000014.9 scf7180000172549 100.0 True fake: scaffold gap size wrong estimation (local) 35624235 35629306 1180 6280 NC_000014.9 scf7180000172549 99.78 True CONTIG scf7180000172549 6280 correct 103803570 103807555 4739 744 NC_000014.9 scf7180000172550 99.77 True fake: scaffold gap size wrong estimation (local) 103801116 103803387 7177 4906 NC_000014.9 scf7180000172550 100.0 True fake: scaffold gap size wrong estimation (local) 103798404 103799246 9793 8951 NC_000014.9 scf7180000172550 97.63 True local misassembly 103797091 103798164 10867 9794 NC_000014.9 scf7180000172550 99.91 True fake: scaffold gap size wrong estimation (local) 103794567 103796043 13434 11958 NC_000014.9 scf7180000172550 100.0 True CONTIG scf7180000172550 15516 correct 55107432 55108784 2059 704 NC_000014.9 scf7180000172551 99.63 True fake: scaffold gap size wrong estimation (local) 55105282 55107040 4324 2606 NC_000014.9 scf7180000172551 97.7 True fake: scaffold gap size wrong estimation (local) 55101666 55105109 7907 4464 NC_000014.9 scf7180000172551 99.97 True fake: scaffold gap size wrong estimation (local) 55099588 55101514 9948 8013 NC_000014.9 scf7180000172551 100.0 True fake: scaffold gap size wrong estimation (local) 55096583 55099366 12968 10190 NC_000014.9 scf7180000172551 99.71 True fake: scaffold gap size wrong estimation (local) 55094468 55095711 15006 13763 NC_000014.9 scf7180000172551 100.0 True fake: scaffold gap size wrong estimation (local) 55093548 55094467 16249 15330 NC_000014.9 scf7180000172551 100.0 True CONTIG scf7180000172551 16256 correct 55187587 55195148 7532 1 NC_000014.9 scf7180000172552 98.32 True fake: scaffold gap size wrong estimation (local) 55186223 55187086 8865 8002 NC_000014.9 scf7180000172552 99.88 True fake: scaffold gap size wrong estimation (local) 55184160 55185327 10724 9557 NC_000014.9 scf7180000172552 99.74 True fake: scaffold gap size wrong estimation (local) 55178875 55183907 16178 11146 NC_000014.9 scf7180000172552 100.0 True fake: scaffold gap size wrong estimation (local) 55177000 55177626 18101 17475 NC_000014.9 scf7180000172552 100.0 True fake: scaffold gap size wrong estimation (local) 55174966 55176723 20348 18591 NC_000014.9 scf7180000172552 100.0 True CONTIG scf7180000172552 22132 correct 102051757 102053156 1931 532 NC_000014.9 scf7180000172553 99.93 True fake: scaffold gap size wrong estimation (local) 102047644 102051230 6148 2562 NC_000014.9 scf7180000172553 100.0 True fake: scaffold gap size wrong estimation (local) 102046169 102047330 7639 6478 NC_000014.9 scf7180000172553 99.91 True CONTIG scf7180000172553 8297 correct CONTIG scf7180000172554 3198 unaligned 75183988 75186096 2308 4416 NC_000014.9 scf7180000172555 99.86 True fake: scaffold gap size wrong estimation (local) 75186244 75187571 4670 5997 NC_000014.9 scf7180000172555 100.0 True fake: scaffold gap size wrong estimation (local) 75187962 75190438 6289 8765 NC_000014.9 scf7180000172555 100.0 True fake: scaffold gap size wrong estimation (local) 75190633 75191456 9146 9945 NC_000014.9 scf7180000172555 97.01 True fake: scaffold gap size wrong estimation (local) 75192506 75194906 10569 13205 NC_000014.9 scf7180000172555 98.83 True CONTIG scf7180000172555 13205 correct 63610119 63610712 7 611 NC_000014.9 scf7180000172556 100.0 True fake: scaffold gap size wrong estimation (local) 63611989 63613520 1983 3481 NC_000014.9 scf7180000172556 97.75 True fake: scaffold gap size wrong estimation (local) 63613835 63615707 3615 5692 NC_000014.9 scf7180000172556 99.63 True fake: scaffold gap size wrong estimation (local) 63615935 63618366 5849 8315 NC_000014.9 scf7180000172556 100.0 True fake: scaffold gap size wrong estimation (local) 63620008 63620837 9981 10810 NC_000014.9 scf7180000172556 99.28 True CONTIG scf7180000172556 10838 correct 55201763 55208860 9247 2067 NC_000014.9 scf7180000172557 98.39 True fake: scaffold gap size wrong estimation (local) 55197583 55201673 13498 9395 NC_000014.9 scf7180000172557 99.88 True fake: scaffold gap size wrong estimation (local) 55195368 55197452 15808 13721 NC_000014.9 scf7180000172557 99.66 True CONTIG scf7180000172557 15857 correct 37189989 37191283 1403 108 NC_000014.9 scf7180000172558 99.07 True fake: scaffold gap size wrong estimation (local) 37186794 37187597 4266 3463 NC_000014.9 scf7180000172558 97.51 True local misassembly 37185506 37186483 5244 4267 NC_000014.9 scf7180000172558 100.0 True fake: scaffold gap size wrong estimation (local) 37182712 37183581 7987 7118 NC_000014.9 scf7180000172558 99.66 True fake: scaffold gap size wrong estimation (local) 37180215 37180906 10351 9660 NC_000014.9 scf7180000172558 99.86 True CONTIG scf7180000172558 10485 correct 18436650 18437489 840 1 NC_000014.9 scf7180000172559 99.76 True unknown 18433633 18434859 3138 1912 NC_000014.9 scf7180000172559 99.19 True unknown CONTIG scf7180000172559 4306 mis_unaligned 49806437 49807561 2170 3294 NC_000014.9 scf7180000172560 99.82 True fake: scaffold gap size wrong estimation (local) 49808431 49809610 4464 5643 NC_000014.9 scf7180000172560 99.83 True CONTIG scf7180000172560 5643 correct 64407725 64408285 568 8 NC_000014.9 scf7180000172561 96.43 True local misassembly 64406506 64407509 1572 569 NC_000014.9 scf7180000172561 99.7 True fake: scaffold gap size wrong estimation (local) 64403538 64406000 4646 2106 NC_000014.9 scf7180000172561 97.58 True fake: scaffold gap size wrong estimation (local) 64401710 64402741 6462 5431 NC_000014.9 scf7180000172561 99.9 True CONTIG scf7180000172561 6964 correct 55144834 55153336 10303 1902 NC_000014.9 scf7180000172562 98.63 True fake: scaffold gap size wrong estimation (local) 55126883 55144667 28177 10425 NC_000014.9 scf7180000172562 98.18 True CONTIG scf7180000172562 28177 correct 21815001 21823244 2135 10424 NC_000014.9 scf7180000172563 99.51 True fake: scaffold gap size wrong estimation (local) 21823521 21826492 10608 13579 NC_000014.9 scf7180000172563 99.83 True fake: scaffold gap size wrong estimation (local) 21826766 21852654 13819 39750 NC_000014.9 scf7180000172563 99.51 True CONTIG scf7180000172563 39750 correct 35733464 35736786 2162 5484 NC_000014.9 scf7180000172564 100.0 True fake: scaffold gap size wrong estimation (local) 35737027 35745611 5919 14244 NC_000014.9 scf7180000172564 95.52 True CONTIG scf7180000172564 14247 correct 103851749 103852294 28 573 NC_000014.9 scf7180000172565 100.0 True fake: scaffold gap size wrong estimation (local) 103852535 103853367 866 1697 NC_000014.9 scf7180000172565 99.52 True fake: scaffold gap size wrong estimation (local) 103853639 103857803 1974 6138 NC_000014.9 scf7180000172565 99.95 True fake: scaffold gap size wrong estimation (local) 103858061 103858940 6450 7329 NC_000014.9 scf7180000172565 100.0 True fake: scaffold gap size wrong estimation (local) 103859169 103860750 7456 9053 NC_000014.9 scf7180000172565 99.94 True fake: scaffold gap size wrong estimation (local) 103861315 103862950 9613 11248 NC_000014.9 scf7180000172565 99.76 True local misassembly 103863107 103863833 11249 11975 NC_000014.9 scf7180000172565 97.25 True fake: scaffold gap size wrong estimation (local) 103864069 103864572 12401 12904 NC_000014.9 scf7180000172565 100.0 True fake: scaffold gap size wrong estimation (local) 103865907 103866463 13995 14551 NC_000014.9 scf7180000172565 99.64 True fake: scaffold gap size wrong estimation (local) 103866608 103869190 14926 17445 NC_000014.9 scf7180000172565 97.39 True fake: scaffold gap size wrong estimation (local) 103869322 103871419 17687 19784 NC_000014.9 scf7180000172565 99.95 True CONTIG scf7180000172565 19784 correct 57118213 57124943 10 6714 NC_000014.9 scf7180000172566 99.28 True fake: scaffold gap size wrong estimation (local) 57125183 57132563 7066 14597 NC_000014.9 scf7180000172566 95.7 True fake: scaffold gap size wrong estimation (local) 57132936 57137819 14830 19741 NC_000014.9 scf7180000172566 99.49 True fake: scaffold gap size wrong estimation (local) 57138937 57139585 21130 21778 NC_000014.9 scf7180000172566 100.0 True CONTIG scf7180000172566 21819 correct 75104703 75105316 614 1 NC_000014.9 scf7180000172567 100.0 True fake: scaffold gap size wrong estimation (local) 75103078 75104181 2203 1100 NC_000014.9 scf7180000172567 99.82 True fake: scaffold gap size wrong estimation (local) 75100165 75102370 5167 2830 NC_000014.9 scf7180000172567 99.72 True fake: scaffold gap size wrong estimation (local) 75096830 75099640 8363 5553 NC_000014.9 scf7180000172567 99.89 True fake: scaffold gap size wrong estimation (local) 75092536 75096071 12613 9013 NC_000014.9 scf7180000172567 99.52 True fake: scaffold gap size wrong estimation (local) 75090296 75092089 14771 12962 NC_000014.9 scf7180000172567 99.89 True fake: scaffold gap size wrong estimation (local) 75086788 75089415 18207 15580 NC_000014.9 scf7180000172567 99.85 True fake: scaffold gap size wrong estimation (local) 75081214 75086093 23784 18905 NC_000014.9 scf7180000172567 99.9 True fake: scaffold gap size wrong estimation (local) 75076425 75080078 28485 24837 NC_000014.9 scf7180000172567 99.53 True CONTIG scf7180000172567 28485 correct 23191350 23192060 819 109 NC_000014.9 scf7180000172568 99.72 True fake: scaffold gap size wrong estimation (local) 23188517 23189690 3650 2477 NC_000014.9 scf7180000172568 100.0 True fake: scaffold gap size wrong estimation (local) 23180197 23187449 12031 4867 NC_000014.9 scf7180000172568 97.9 True fake: scaffold gap size wrong estimation (local) 23176939 23179909 15241 12395 NC_000014.9 scf7180000172568 95.76 True fake: scaffold gap size wrong estimation (local) 23170689 23176687 21425 15503 NC_000014.9 scf7180000172568 98.7 True CONTIG scf7180000172568 21425 correct 57762610 57777260 30 14831 NC_000014.9 scf7180000172569 99.15 True fake: scaffold gap size wrong estimation (local) 57779593 57780268 16975 17650 NC_000014.9 scf7180000172569 100.0 True relocation, scaffold gap is present, inconsistency = 13796912 71578828 71579433 19903 19298 NC_000014.9 scf7180000172569 100.0 True CONTIG scf7180000172569 20277 misassembled 96479384 96480260 1 879 NC_000014.9 scf7180000172570 99.77 True fake: scaffold gap size wrong estimation (local) 96481714 96485822 2283 6518 NC_000014.9 scf7180000172570 99.9 True fake: scaffold gap size wrong estimation (local) 96486057 96487212 6767 7922 NC_000014.9 scf7180000172570 99.91 True fake: scaffold gap size wrong estimation (local) 96488177 96490210 8773 10830 NC_000014.9 scf7180000172570 99.8 True fake: scaffold gap size wrong estimation (local) 96490904 96492951 11489 13609 NC_000014.9 scf7180000172570 96.62 True fake: scaffold gap size wrong estimation (local) 96493882 96494958 14468 15544 NC_000014.9 scf7180000172570 100.0 True CONTIG scf7180000172570 15648 correct 49805462 49806244 782 1 NC_000014.9 scf7180000172571 99.62 True fake: scaffold gap size wrong estimation (local) 49801959 49803600 4166 2463 NC_000014.9 scf7180000172571 97.51 True relocation, inconsistency = 43218003 93021604 93022632 4167 5194 NC_000014.9 scf7180000172571 99.81 True CONTIG scf7180000172571 5194 misassembled 70279441 70280636 1210 15 NC_000014.9 scf7180000172572 99.83 True fake: scaffold gap size wrong estimation (local) 70264849 70277937 15821 2691 NC_000014.9 scf7180000172572 99.64 True fake: scaffold gap size wrong estimation (local) 70261989 70264703 18735 16021 NC_000014.9 scf7180000172572 99.85 True fake: scaffold gap size wrong estimation (local) 70255351 70261757 25215 18861 NC_000014.9 scf7180000172572 98.87 True fake: scaffold gap size wrong estimation (local) 70254078 70254943 26642 25743 NC_000014.9 scf7180000172572 99.06 True CONTIG scf7180000172572 27276 correct 60490534 60523587 2 32894 NC_000014.9 scf7180000172573 98.67 True fake: scaffold gap size wrong estimation (local) 60525100 60526043 34456 35399 NC_000014.9 scf7180000172573 98.31 True fake: scaffold gap size wrong estimation (local) 60526470 60527010 36247 36787 NC_000014.9 scf7180000172573 100.0 True fake: scaffold gap size wrong estimation (local) 60527380 60537261 36918 46639 NC_000014.9 scf7180000172573 97.82 True fake: scaffold gap size wrong estimation (local) 60537279 60538040 46802 47563 NC_000014.9 scf7180000172573 99.87 True fake: scaffold gap size wrong estimation (local) 60538391 60569820 47733 79828 NC_000014.9 scf7180000172573 96.35 True fake: scaffold gap size wrong estimation (local) 60570773 60571713 80832 81772 NC_000014.9 scf7180000172573 99.79 True CONTIG scf7180000172573 81772 correct 102243591 102244169 143 721 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102245094 102248534 1472 4913 NC_000014.9 scf7180000172574 99.85 True fake: scaffold gap size wrong estimation (local) 102248784 102249468 4991 5675 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102249599 102252221 5881 8503 NC_000014.9 scf7180000172574 99.96 True fake: scaffold gap size wrong estimation (local) 102252345 102254325 8650 10630 NC_000014.9 scf7180000172574 99.7 True fake: scaffold gap size wrong estimation (local) 102255284 102256133 11618 12467 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102256559 102257725 12842 14008 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102257976 102258814 14241 15079 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102259056 102259840 15527 16311 NC_000014.9 scf7180000172574 100.0 True local misassembly 102260163 102261252 16312 17401 NC_000014.9 scf7180000172574 97.34 True fake: scaffold gap size wrong estimation (local) 102262118 102264028 18316 20226 NC_000014.9 scf7180000172574 100.0 True fake: scaffold gap size wrong estimation (local) 102264220 102266632 20459 22856 NC_000014.9 scf7180000172574 99.04 True CONTIG scf7180000172574 22856 correct 90837968 90838748 3151 3931 NC_000014.9 scf7180000172575 99.74 True fake: scaffold gap size wrong estimation (local) 90840397 90840973 5726 6302 NC_000014.9 scf7180000172575 96.19 True indel: indel (<= 5bp) 90841058 90841678 6388 7008 NC_000014.9 scf7180000172575 99.84 True fake: scaffold gap size wrong estimation (local) 90842683 90843629 8092 9038 NC_000014.9 scf7180000172575 99.68 True fake: scaffold gap size wrong estimation (local) 90843959 90851105 9225 16419 NC_000014.9 scf7180000172575 99.82 True fake: scaffold gap size wrong estimation (local) 90851304 90852088 16611 17395 NC_000014.9 scf7180000172575 99.87 True local misassembly 90852216 90852740 17396 17920 NC_000014.9 scf7180000172575 95.62 True fake: scaffold gap size wrong estimation (local) 90852972 90853505 18070 18603 NC_000014.9 scf7180000172575 100.0 True fake: scaffold gap size wrong estimation (local) 90853670 90855537 18887 20754 NC_000014.9 scf7180000172575 100.0 True CONTIG scf7180000172575 20806 correct 18538895 18539453 1 559 NC_000014.9 scf7180000172576 99.82 True fake: scaffold gap size wrong estimation (local) 18540933 18541537 2724 3328 NC_000014.9 scf7180000172576 99.5 True CONTIG scf7180000172576 3328 correct 42927135 42927848 989 276 NC_000014.9 scf7180000172577 100.0 True fake: scaffold gap size wrong estimation (local) 42925273 42926339 3301 2235 NC_000014.9 scf7180000172577 99.82 True relocation, inconsistency = 29174039 72100379 72116707 3302 19657 NC_000014.9 scf7180000172577 99.83 True fake: scaffold gap size wrong estimation (local) 72116969 72138461 19888 41381 NC_000014.9 scf7180000172577 99.81 True fake: not a misassembly (possible transposable element) 92770368 92771525 41402 42559 NC_000014.9 scf7180000172577 100.0 True fake: not a misassembly (possible transposable element) 72138632 72147879 42560 51822 NC_000014.9 scf7180000172577 99.91 True fake: scaffold gap size wrong estimation (local) 72148134 72156343 52087 60288 NC_000014.9 scf7180000172577 99.77 True fake: scaffold gap size wrong estimation (local) 72156474 72157972 60488 61986 NC_000014.9 scf7180000172577 99.6 True CONTIG scf7180000172577 61986 misassembled 25286223 25315889 34 29816 NC_000014.9 scf7180000172578 97.81 True fake: scaffold gap size wrong estimation (local) 25316114 25317875 30127 31888 NC_000014.9 scf7180000172578 99.49 True fake: scaffold gap size wrong estimation (local) 25317876 25319403 32124 33651 NC_000014.9 scf7180000172578 99.02 True indel: indel (<= 5bp) 25319877 25321071 34124 35318 NC_000014.9 scf7180000172578 99.25 True fake: scaffold gap size wrong estimation (local) 25321072 25324152 35622 38702 NC_000014.9 scf7180000172578 99.87 True fake: scaffold gap size wrong estimation (local) 25324901 25326213 39478 40790 NC_000014.9 scf7180000172578 99.92 True fake: scaffold gap size wrong estimation (local) 25328113 25328691 42582 43160 NC_000014.9 scf7180000172578 99.65 True CONTIG scf7180000172578 43160 correct 102357392 102358486 1335 241 NC_000014.9 scf7180000172579 100.0 True fake: scaffold gap size wrong estimation (local) 102354867 102357089 3988 1757 NC_000014.9 scf7180000172579 100.0 True fake: scaffold gap size wrong estimation (local) 102353126 102354520 5735 4341 NC_000014.9 scf7180000172579 99.86 True fake: scaffold gap size wrong estimation (local) 102352137 102352834 6677 5980 NC_000014.9 scf7180000172579 99.57 True fake: scaffold gap size wrong estimation (local) 102351026 102351931 7809 6904 NC_000014.9 scf7180000172579 99.78 True fake: scaffold gap size wrong estimation (local) 102349010 102350403 9841 8448 NC_000014.9 scf7180000172579 100.0 True fake: scaffold gap size wrong estimation (local) 102346808 102347398 12324 11734 NC_000014.9 scf7180000172579 100.0 True CONTIG scf7180000172579 12324 correct 21889264 21896672 7336 3 NC_000014.9 scf7180000172580 98.63 True fake: scaffold gap size wrong estimation (local) 21876532 21889215 20404 7721 NC_000014.9 scf7180000172580 99.81 True CONTIG scf7180000172580 20409 correct 106065998 106072117 8097 1967 NC_000014.9 scf7180000172581 98.62 True CONTIG scf7180000172581 8107 correct 50004734 50009827 5478 383 NC_000014.9 scf7180000172582 98.93 True fake: scaffold gap size wrong estimation (local) 49998815 50004530 11393 5680 NC_000014.9 scf7180000172582 99.95 True fake: scaffold gap size wrong estimation (local) 49997167 49998580 12926 11513 NC_000014.9 scf7180000172582 99.86 True fake: scaffold gap size wrong estimation (local) 49995881 49997007 14261 13135 NC_000014.9 scf7180000172582 99.82 True CONTIG scf7180000172582 14261 correct 67467012 67468672 1679 1 NC_000014.9 scf7180000172583 99.94 True fake: scaffold gap size wrong estimation (local) 67463645 67466866 5102 1881 NC_000014.9 scf7180000172583 100.0 True fake: scaffold gap size wrong estimation (local) 67460609 67463197 8144 5556 NC_000014.9 scf7180000172583 100.0 True fake: scaffold gap size wrong estimation (local) 67452443 67460453 16265 8233 NC_000014.9 scf7180000172583 97.34 True CONTIG scf7180000172583 16970 correct 64581091 64582875 4422 2638 NC_000014.9 scf7180000172584 99.83 True fake: scaffold gap size wrong estimation (local) 64578593 64579713 6809 5689 NC_000014.9 scf7180000172584 99.91 True CONTIG scf7180000172584 6809 correct 34900720 34901282 563 1 NC_000014.9 scf7180000172585 100.0 True fake: scaffold gap size wrong estimation (local) 34898065 34898825 3244 2484 NC_000014.9 scf7180000172585 99.74 True fake: scaffold gap size wrong estimation (local) 34895110 34897119 6169 4160 NC_000014.9 scf7180000172585 100.0 True fake: scaffold gap size wrong estimation (local) 34893176 34893822 8177 7531 NC_000014.9 scf7180000172585 100.0 True fake: scaffold gap size wrong estimation (local) 34890724 34892346 10738 9116 NC_000014.9 scf7180000172585 98.46 True local misassembly 34890008 34890529 11260 10739 NC_000014.9 scf7180000172585 99.81 True fake: scaffold gap size wrong estimation (local) 34885313 34888826 16091 12578 NC_000014.9 scf7180000172585 97.67 True fake: scaffold gap size wrong estimation (local) 34883146 34884273 18263 17119 NC_000014.9 scf7180000172585 99.11 True fake: scaffold gap size wrong estimation (local) 34881897 34882626 19226 18498 NC_000014.9 scf7180000172585 99.73 True fake: scaffold gap size wrong estimation (local) 34880300 34881541 21091 19850 NC_000014.9 scf7180000172585 99.92 True fake: scaffold gap size wrong estimation (local) 34879455 34880060 21815 21210 NC_000014.9 scf7180000172585 100.0 True CONTIG scf7180000172585 21815 correct CONTIG scf7180000172586 9785 unaligned 103843326 103849973 7749 1032 NC_000014.9 scf7180000172587 99.53 True fake: scaffold gap size wrong estimation (local) 103841218 103842758 9565 8079 NC_000014.9 scf7180000172587 95.95 True fake: scaffold gap size wrong estimation (local) 103839503 103841039 11330 9768 NC_000014.9 scf7180000172587 98.77 True fake: scaffold gap size wrong estimation (local) 103838213 103839006 12689 11896 NC_000014.9 scf7180000172587 100.0 True fake: scaffold gap size wrong estimation (local) 103836291 103837921 14451 12821 NC_000014.9 scf7180000172587 99.94 True fake: scaffold gap size wrong estimation (local) 103834597 103835394 16069 15272 NC_000014.9 scf7180000172587 99.87 True fake: scaffold gap size wrong estimation (local) 103831862 103832973 18947 17836 NC_000014.9 scf7180000172587 100.0 True fake: scaffold gap size wrong estimation (local) 103830053 103831328 20492 19218 NC_000014.9 scf7180000172587 99.92 True fake: scaffold gap size wrong estimation (local) 103827263 103829858 23337 20751 NC_000014.9 scf7180000172587 99.42 True fake: scaffold gap size wrong estimation (local) 103826126 103826711 24572 23987 NC_000014.9 scf7180000172587 100.0 True fake: scaffold gap size wrong estimation (local) 103824608 103825848 25984 24744 NC_000014.9 scf7180000172587 99.92 True fake: scaffold gap size wrong estimation (local) 103823329 103824059 27334 26604 NC_000014.9 scf7180000172587 100.0 True fake: scaffold gap size wrong estimation (local) 103816661 103821493 33905 29068 NC_000014.9 scf7180000172587 99.88 True fake: scaffold gap size wrong estimation (local) 103814914 103815554 35576 34936 NC_000014.9 scf7180000172587 99.84 True fake: scaffold gap size wrong estimation (local) 103812697 103814174 37718 36241 NC_000014.9 scf7180000172587 99.93 True CONTIG scf7180000172587 37718 correct 102281504 102282173 684 1353 NC_000014.9 scf7180000172588 99.85 True fake: scaffold gap size wrong estimation (local) 102283071 102284906 2145 3980 NC_000014.9 scf7180000172588 100.0 True fake: scaffold gap size wrong estimation (local) 102286921 102287830 5784 6693 NC_000014.9 scf7180000172588 100.0 True CONTIG scf7180000172588 6693 correct 18269808 18270552 758 14 NC_000014.9 scf7180000172589 98.93 True fake: scaffold gap size wrong estimation (local) 18267011 18267595 3667 3083 NC_000014.9 scf7180000172589 98.97 True CONTIG scf7180000172589 3956 correct 106449472 106450107 636 1 NC_000014.9 scf7180000172590 100.0 True relocation, inconsistency = -330149 106778817 106779620 1440 637 NC_000014.9 scf7180000172590 99.5 True fake: scaffold gap size wrong estimation (local) 106775634 106777572 4625 2687 NC_000014.9 scf7180000172590 99.48 True fake: scaffold gap size wrong estimation (local) 106774340 106775204 6122 5258 NC_000014.9 scf7180000172590 99.31 True fake: scaffold gap size wrong estimation (local) 106772654 106773750 7446 6350 NC_000014.9 scf7180000172590 99.64 True CONTIG scf7180000172590 7456 misassembled 60406334 60414465 1 8557 NC_000014.9 scf7180000172591 95.23 True fake: scaffold gap size wrong estimation (local) 60414975 60416660 8990 10675 NC_000014.9 scf7180000172591 100.0 True fake: scaffold gap size wrong estimation (local) 60416838 60421209 10899 15270 NC_000014.9 scf7180000172591 99.89 True CONTIG scf7180000172591 15270 correct 106235027 106236423 4000 2604 NC_000014.9 scf7180000172592 99.43 True relocation, scaffold gap is present, inconsistency = 370378 105860122 105864628 8518 4021 NC_000014.9 scf7180000172592 99.64 True CONTIG scf7180000172592 9032 misassembled CONTIG scf7180000172593 5717 unaligned 66592775 66593580 186 991 NC_000014.9 scf7180000172594 99.88 True fake: scaffold gap size wrong estimation (local) 66594833 66595974 2341 3482 NC_000014.9 scf7180000172594 100.0 True CONTIG scf7180000172594 3810 correct 48727773 48760294 33369 672 NC_000014.9 scf7180000172595 98.78 True fake: scaffold gap size wrong estimation (local) 48713619 48727478 47421 33574 NC_000014.9 scf7180000172595 99.85 True CONTIG scf7180000172595 47421 correct 69388583 69389200 1 618 NC_000014.9 scf7180000172596 100.0 True fake: scaffold gap size wrong estimation (local) 69390911 69391570 2330 2989 NC_000014.9 scf7180000172596 100.0 True CONTIG scf7180000172596 2989 correct 55209440 55210316 2321 3197 NC_000014.9 scf7180000172597 100.0 True fake: scaffold gap size wrong estimation (local) 55211269 55212969 4268 5948 NC_000014.9 scf7180000172597 98.82 True CONTIG scf7180000172597 6069 correct 102322796 102324337 24 1565 NC_000014.9 scf7180000172598 100.0 True fake: scaffold gap size wrong estimation (local) 102325715 102327033 2724 4042 NC_000014.9 scf7180000172598 99.92 True CONTIG scf7180000172598 4042 correct 86265332 86267062 1 1732 NC_000014.9 scf7180000172599 99.6 True fake: scaffold gap size wrong estimation (local) 86268333 86269871 2803 4333 NC_000014.9 scf7180000172599 97.99 True relocation, scaffold gap is present, inconsistency = 23071574 63194793 63195471 6299 5621 NC_000014.9 scf7180000172599 99.85 True fake: scaffold gap size wrong estimation (local) 63191708 63194313 9531 6882 NC_000014.9 scf7180000172599 97.96 True fake: scaffold gap size wrong estimation (local) 63189815 63191493 11367 9691 NC_000014.9 scf7180000172599 99.82 True fake: scaffold gap size wrong estimation (local) 63173561 63189476 27586 11671 NC_000014.9 scf7180000172599 99.92 True fake: scaffold gap size wrong estimation (local) 63169660 63173350 31435 27745 NC_000014.9 scf7180000172599 99.95 True fake: scaffold gap size wrong estimation (local) 63166606 63169182 34393 31811 NC_000014.9 scf7180000172599 99.73 True fake: scaffold gap size wrong estimation (local) 63158077 63165504 42604 35030 NC_000014.9 scf7180000172599 97.08 True fake: scaffold gap size wrong estimation (local) 63144703 63157971 55775 42757 NC_000014.9 scf7180000172599 97.46 True CONTIG scf7180000172599 58592 misassembled 34739965 34741366 1914 3315 NC_000014.9 scf7180000172600 99.07 True fake: scaffold gap size wrong estimation (local) 34741682 34743430 3687 5435 NC_000014.9 scf7180000172600 100.0 True fake: scaffold gap size wrong estimation (local) 34743891 34746383 5870 8362 NC_000014.9 scf7180000172600 99.96 True fake: scaffold gap size wrong estimation (local) 34747294 34748549 8428 9683 NC_000014.9 scf7180000172600 99.92 True local misassembly 34746620 34747126 9704 10210 NC_000014.9 scf7180000172600 100.0 True fake: scaffold gap size wrong estimation (local) 34748556 34749895 11685 13024 NC_000014.9 scf7180000172600 99.93 True fake: scaffold gap size wrong estimation (local) 34751726 34753953 13300 15527 NC_000014.9 scf7180000172600 99.96 True fake: scaffold gap size wrong estimation (local) 34754424 34756155 16035 17766 NC_000014.9 scf7180000172600 99.88 True fake: scaffold gap size wrong estimation (local) 34756588 34757168 18239 18819 NC_000014.9 scf7180000172600 100.0 True fake: scaffold gap size wrong estimation (local) 34758001 34759172 19458 20654 NC_000014.9 scf7180000172600 98.73 True fake: scaffold gap size wrong estimation (local) 34759881 34764301 21332 25768 NC_000014.9 scf7180000172600 99.84 True fake: scaffold gap size wrong estimation (local) 34764536 34770246 25907 31617 NC_000014.9 scf7180000172600 99.91 True fake: scaffold gap size wrong estimation (local) 34770367 34773508 31734 35144 NC_000014.9 scf7180000172600 99.44 True CONTIG scf7180000172600 35144 correct 105701784 105703059 35 1310 NC_000014.9 scf7180000172601 99.29 True fake: scaffold gap size wrong estimation (local) 105706952 105709482 4746 7237 NC_000014.9 scf7180000172601 97.16 True relocation, inconsistency = -120249 105589234 105590176 7238 8225 NC_000014.9 scf7180000172601 95.82 True CONTIG scf7180000172601 8727 misassembled CONTIG scf7180000172602 6962 unaligned 102312001 102312556 556 1 NC_000014.9 scf7180000172603 99.82 True fake: scaffold gap size wrong estimation (local) 102308885 102309829 3580 2636 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102307077 102308713 5694 4058 NC_000014.9 scf7180000172603 97.31 True fake: scaffold gap size wrong estimation (local) 102303108 102305543 9548 7113 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102300374 102302124 12291 10518 NC_000014.9 scf7180000172603 99.37 True fake: scaffold gap size wrong estimation (local) 102298589 102299260 14195 13524 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102297632 102298238 15419 14813 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102294458 102296817 18263 15886 NC_000014.9 scf7180000172603 99.1 True fake: scaffold gap size wrong estimation (local) 102292469 102293445 20261 19285 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102290379 102291705 22362 21036 NC_000014.9 scf7180000172603 100.0 True fake: scaffold gap size wrong estimation (local) 102289706 102290260 23053 22472 NC_000014.9 scf7180000172603 98.75 True fake: scaffold gap size wrong estimation (local) 102288109 102288983 24604 23730 NC_000014.9 scf7180000172603 100.0 True CONTIG scf7180000172603 24604 correct 18520427 18521120 904 211 NC_000014.9 scf7180000172604 100.0 True unknown 18514982 18515822 6402 5562 NC_000014.9 scf7180000172604 99.88 True unknown CONTIG scf7180000172604 9505 mis_unaligned 19643915 19649104 6621 1361 NC_000014.9 scf7180000172605 97.53 True fake: scaffold gap size wrong estimation (local) 19641619 19642918 8712 7404 NC_000014.9 scf7180000172605 97.56 True relocation, scaffold gap is present, inconsistency = 113777 19490478 19498630 46067 37924 NC_000014.9 scf7180000172605 99.35 True CONTIG scf7180000172605 46067 misassembled 106059354 106059883 530 1 NC_000014.9 scf7180000172606 99.06 True fake: scaffold gap size wrong estimation (local) 106054252 106057183 5378 2419 NC_000014.9 scf7180000172606 99.32 True fake: scaffold gap size wrong estimation (local) 106051467 106053053 8173 6584 NC_000014.9 scf7180000172606 99.69 True CONTIG scf7180000172606 8245 correct 88907254 88923939 16673 2 NC_000014.9 scf7180000172607 99.77 True fake: scaffold gap size wrong estimation (local) 88900669 88907124 23090 16754 NC_000014.9 scf7180000172607 97.55 True fake: not a misassembly (possible transposable element) 43852311 43854087 24887 23111 NC_000014.9 scf7180000172607 100.0 True fake: not a misassembly (possible transposable element) 88897105 88899895 27624 24888 NC_000014.9 scf7180000172607 97.89 True fake: scaffold gap size wrong estimation (local) 88882996 88896914 42234 27821 NC_000014.9 scf7180000172607 96.79 True fake: scaffold gap size wrong estimation (local) 88882075 88882700 43102 42477 NC_000014.9 scf7180000172607 100.0 True fake: scaffold gap size wrong estimation (local) 88881421 88882074 43883 43230 NC_000014.9 scf7180000172607 96.94 True indel: indel (> 5bp) 88879917 88881352 45319 43884 NC_000014.9 scf7180000172607 99.93 True fake: scaffold gap size wrong estimation (local) 88858776 88879804 66645 45442 NC_000014.9 scf7180000172607 98.89 True fake: scaffold gap size wrong estimation (local) 88858144 88858731 67334 66747 NC_000014.9 scf7180000172607 96.6 True local misassembly 88855829 88857990 69496 67335 NC_000014.9 scf7180000172607 99.95 True CONTIG scf7180000172607 69501 correct 92247456 92248612 3335 2179 NC_000014.9 scf7180000172608 99.91 True fake: scaffold gap size wrong estimation (local) 92243939 92245884 6755 4810 NC_000014.9 scf7180000172608 99.9 True fake: scaffold gap size wrong estimation (local) 92241063 92244015 10181 7229 NC_000014.9 scf7180000172608 99.76 True fake: scaffold gap size wrong estimation (local) 92238748 92241062 13114 10800 NC_000014.9 scf7180000172608 99.27 True indel: indel (<= 5bp) 92234475 92238743 17383 13115 NC_000014.9 scf7180000172608 99.88 True CONTIG scf7180000172608 18836 correct 58590863 58591367 32 536 NC_000014.9 scf7180000172609 97.82 True fake: scaffold gap size wrong estimation (local) 58593544 58594596 2570 3622 NC_000014.9 scf7180000172609 99.72 True fake: scaffold gap size wrong estimation (local) 58595052 58597465 4196 6631 NC_000014.9 scf7180000172609 98.72 True fake: scaffold gap size wrong estimation (local) 58597756 58606330 6790 15359 NC_000014.9 scf7180000172609 99.81 True fake: scaffold gap size wrong estimation (local) 58606535 58610378 15518 19361 NC_000014.9 scf7180000172609 99.97 True fake: scaffold gap size wrong estimation (local) 58610774 58614470 19642 23259 NC_000014.9 scf7180000172609 97.69 True fake: scaffold gap size wrong estimation (local) 58614734 58616803 23502 25571 NC_000014.9 scf7180000172609 100.0 True fake: scaffold gap size wrong estimation (local) 58617866 58618375 26685 27194 NC_000014.9 scf7180000172609 99.61 True fake: scaffold gap size wrong estimation (local) 58618376 58619035 27314 27973 NC_000014.9 scf7180000172609 99.7 True fake: scaffold gap size wrong estimation (local) 58619421 58626845 28296 35709 NC_000014.9 scf7180000172609 99.69 True fake: scaffold gap size wrong estimation (local) 58627090 58627806 36087 36803 NC_000014.9 scf7180000172609 100.0 True CONTIG scf7180000172609 36803 correct 88803155 88811412 10297 2145 NC_000014.9 scf7180000172610 98.25 True fake: scaffold gap size wrong estimation (local) 88801577 88802770 11847 10660 NC_000014.9 scf7180000172610 99.5 True CONTIG scf7180000172610 13926 correct 63824950 63825641 6118 5427 NC_000014.9 scf7180000172611 99.71 True fake: scaffold gap size wrong estimation (local) 63822006 63823211 8953 7748 NC_000014.9 scf7180000172611 99.83 True fake: scaffold gap size wrong estimation (local) 63819825 63820765 11157 10217 NC_000014.9 scf7180000172611 99.89 True CONTIG scf7180000172611 11222 correct 48612548 48622059 3511 12750 NC_000014.9 scf7180000172612 97.04 True fake: scaffold gap size wrong estimation (local) 48622331 48630733 13035 21360 NC_000014.9 scf7180000172612 98.98 True fake: scaffold gap size wrong estimation (local) 48631152 48658556 21483 49338 NC_000014.9 scf7180000172612 97.78 True fake: scaffold gap size wrong estimation (local) 48660664 48673410 51183 63843 NC_000014.9 scf7180000172612 99.24 True CONTIG scf7180000172612 64834 correct 77744466 77745849 3523 2140 NC_000014.9 scf7180000172613 100.0 True fake: scaffold gap size wrong estimation (local) 77741110 77742975 6720 4925 NC_000014.9 scf7180000172613 95.94 True fake: scaffold gap size wrong estimation (local) 77740133 77740847 7897 7183 NC_000014.9 scf7180000172613 97.2 True local misassembly 77738269 77739912 9541 7898 NC_000014.9 scf7180000172613 100.0 True fake: scaffold gap size wrong estimation (local) 77736510 77737798 11303 10015 NC_000014.9 scf7180000172613 96.9 True local misassembly 77735556 77736358 12106 11304 NC_000014.9 scf7180000172613 100.0 True fake: scaffold gap size wrong estimation (local) 77726436 77735392 21312 12353 NC_000014.9 scf7180000172613 99.31 True CONTIG scf7180000172613 21312 correct 102286305 102286869 3264 2700 NC_000014.9 scf7180000172614 100.0 True CONTIG scf7180000172614 3264 correct 99912090 99913295 2091 859 NC_000014.9 scf7180000172615 99.34 True fake: scaffold gap size wrong estimation (local) 99904027 99911887 10162 2302 NC_000014.9 scf7180000172615 99.87 True fake: scaffold gap size wrong estimation (local) 99903031 99903798 11158 10391 NC_000014.9 scf7180000172615 99.61 True CONTIG scf7180000172615 11965 correct 64519566 64526046 6267 1 NC_000014.9 scf7180000172616 96.58 True fake: scaffold gap size wrong estimation (local) 64518111 64518906 8122 7327 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64515721 64517765 10387 8343 NC_000014.9 scf7180000172616 99.95 True fake: scaffold gap size wrong estimation (local) 64509980 64515535 16042 10625 NC_000014.9 scf7180000172616 97.49 True fake: scaffold gap size wrong estimation (local) 64506457 64509748 19508 16217 NC_000014.9 scf7180000172616 99.94 True fake: scaffold gap size wrong estimation (local) 64499563 64506290 26200 19606 NC_000014.9 scf7180000172616 97.91 True fake: scaffold gap size wrong estimation (local) 64498858 64499421 26922 26359 NC_000014.9 scf7180000172616 99.82 True fake: scaffold gap size wrong estimation (local) 64496379 64498333 29360 27406 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64492441 64496234 33335 29554 NC_000014.9 scf7180000172616 99.63 True fake: scaffold gap size wrong estimation (local) 64490139 64492250 35603 33510 NC_000014.9 scf7180000172616 98.58 True fake: scaffold gap size wrong estimation (local) 64486225 64489016 39444 36653 NC_000014.9 scf7180000172616 99.93 True fake: scaffold gap size wrong estimation (local) 64483967 64486105 41695 39533 NC_000014.9 scf7180000172616 99.72 True fake: scaffold gap size wrong estimation (local) 64482441 64483309 43130 42262 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64481257 64482290 44278 43245 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64475391 64480077 50055 45364 NC_000014.9 scf7180000172616 99.85 True fake: scaffold gap size wrong estimation (local) 64471426 64475191 53900 50135 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64470501 64471173 54699 54025 NC_000014.9 scf7180000172616 100.0 True fake: scaffold gap size wrong estimation (local) 64461867 64470401 63460 54913 NC_000014.9 scf7180000172616 99.98 True fake: scaffold gap size wrong estimation (local) 64457670 64461586 67630 63696 NC_000014.9 scf7180000172616 99.67 True fake: scaffold gap size wrong estimation (local) 64451286 64457472 73890 67765 NC_000014.9 scf7180000172616 98.74 True CONTIG scf7180000172616 73890 correct 95689269 95690293 1025 1 NC_000014.9 scf7180000172617 99.8 True fake: scaffold gap size wrong estimation (local) 95681157 95687679 9118 2571 NC_000014.9 scf7180000172617 99.8 True fake: scaffold gap size wrong estimation (local) 95679233 95680877 11034 9371 NC_000014.9 scf7180000172617 99.88 True CONTIG scf7180000172617 11034 correct 74749662 74750959 2000 3297 NC_000014.9 scf7180000172618 100.0 True fake: scaffold gap size wrong estimation (local) 74751677 74752274 3739 4336 NC_000014.9 scf7180000172618 100.0 True fake: scaffold gap size wrong estimation (local) 74753316 74755243 5451 7378 NC_000014.9 scf7180000172618 99.79 True fake: scaffold gap size wrong estimation (local) 74756299 74756899 8428 9028 NC_000014.9 scf7180000172618 100.0 True fake: scaffold gap size wrong estimation (local) 74757420 74758418 9368 10366 NC_000014.9 scf7180000172618 97.9 True fake: scaffold gap size wrong estimation (local) 74759584 74761018 11624 13058 NC_000014.9 scf7180000172618 95.75 True fake: scaffold gap size wrong estimation (local) 74761265 74766621 13244 18653 NC_000014.9 scf7180000172618 99.72 True fake: scaffold gap size wrong estimation (local) 74767121 74768441 19102 20422 NC_000014.9 scf7180000172618 99.77 True indel: indel (> 5bp) 74768454 74769099 20423 21068 NC_000014.9 scf7180000172618 96.75 True fake: scaffold gap size wrong estimation (local) 74770489 74772221 22369 24102 NC_000014.9 scf7180000172618 99.88 True fake: scaffold gap size wrong estimation (local) 74773818 74774442 25719 26343 NC_000014.9 scf7180000172618 100.0 True CONTIG scf7180000172618 29004 correct 31042070 31043092 2505 3527 NC_000014.9 scf7180000172619 99.71 True fake: scaffold gap size wrong estimation (local) 31044471 31044970 4602 5101 NC_000014.9 scf7180000172619 99.8 True fake: scaffold gap size wrong estimation (local) 31045133 31045983 5631 6481 NC_000014.9 scf7180000172619 100.0 True fake: scaffold gap size wrong estimation (local) 31047406 31049058 7767 9351 NC_000014.9 scf7180000172619 95.71 True CONTIG scf7180000172619 9351 correct 63194249 63194879 1 631 NC_000014.9 scf7180000172620 99.37 True fake: scaffold gap size wrong estimation (local) 63195567 63196966 1442 2841 NC_000014.9 scf7180000172620 99.93 True fake: scaffold gap size wrong estimation (local) 63197245 63207045 3007 12823 NC_000014.9 scf7180000172620 99.85 True fake: scaffold gap size wrong estimation (local) 63207230 63217088 12914 22774 NC_000014.9 scf7180000172620 99.78 True fake: scaffold gap size wrong estimation (local) 63217700 63219583 23262 25145 NC_000014.9 scf7180000172620 99.73 True fake: scaffold gap size wrong estimation (local) 63219817 63221937 25413 27533 NC_000014.9 scf7180000172620 99.81 True fake: scaffold gap size wrong estimation (local) 63222764 63224961 28310 30508 NC_000014.9 scf7180000172620 99.82 True fake: scaffold gap size wrong estimation (local) 63225148 63227049 30752 32653 NC_000014.9 scf7180000172620 99.74 True fake: scaffold gap size wrong estimation (local) 63227232 63230845 32800 36405 NC_000014.9 scf7180000172620 99.72 True fake: scaffold gap size wrong estimation (local) 63231087 63243383 36579 48737 NC_000014.9 scf7180000172620 98.75 True fake: scaffold gap size wrong estimation (local) 63243553 63244318 48824 49589 NC_000014.9 scf7180000172620 99.87 True fake: scaffold gap size wrong estimation (local) 63244422 63258005 49926 63568 NC_000014.9 scf7180000172620 99.71 True fake: scaffold gap size wrong estimation (local) 63258029 63272803 63665 78390 NC_000014.9 scf7180000172620 99.49 True fake: scaffold gap size wrong estimation (local) 63272931 63275214 78503 80786 NC_000014.9 scf7180000172620 100.0 True fake: scaffold gap size wrong estimation (local) 63275305 63277988 80897 83580 NC_000014.9 scf7180000172620 100.0 True CONTIG scf7180000172620 83580 correct 90839055 90839911 3169 2313 NC_000014.9 scf7180000172621 99.65 True fake: scaffold gap size wrong estimation (local) 90836188 90837863 6049 4398 NC_000014.9 scf7180000172621 98.57 True fake: scaffold gap size wrong estimation (local) 90834559 90835300 7769 7031 NC_000014.9 scf7180000172621 98.48 True fake: scaffold gap size wrong estimation (local) 90827525 90832531 14617 9594 NC_000014.9 scf7180000172621 98.68 True CONTIG scf7180000172621 17192 correct 31058198 31059946 1910 3634 NC_000014.9 scf7180000172622 98.63 True fake: scaffold gap size wrong estimation (local) 31061283 31065690 5059 9413 NC_000014.9 scf7180000172622 95.48 True fake: scaffold gap size wrong estimation (local) 31065904 31067102 9575 10773 NC_000014.9 scf7180000172622 99.75 True fake: scaffold gap size wrong estimation (local) 31068089 31070139 11715 13765 NC_000014.9 scf7180000172622 98.88 True fake: scaffold gap size wrong estimation (local) 31072342 31073242 15705 16605 NC_000014.9 scf7180000172622 99.89 True CONTIG scf7180000172622 16605 correct 54613042 54634082 21001 14 NC_000014.9 scf7180000172623 99.58 True fake: scaffold gap size wrong estimation (local) 54611856 54612930 22162 21088 NC_000014.9 scf7180000172623 99.81 True fake: scaffold gap size wrong estimation (local) 54607730 54611620 26481 22382 NC_000014.9 scf7180000172623 99.82 True fake: scaffold gap size wrong estimation (local) 54604093 54607470 29920 26535 NC_000014.9 scf7180000172623 99.68 True fake: scaffold gap size wrong estimation (local) 54602744 54603924 31289 30107 NC_000014.9 scf7180000172623 99.75 True CONTIG scf7180000172623 31290 correct 44201549 44208377 6700 1 NC_000014.9 scf7180000172624 97.8 True fake: scaffold gap size wrong estimation (local) 44185641 44201396 22594 6921 NC_000014.9 scf7180000172624 99.03 True fake: scaffold gap size wrong estimation (local) 44183198 44185560 25006 22644 NC_000014.9 scf7180000172624 100.0 True fake: scaffold gap size wrong estimation (local) 44176599 44183067 31561 25092 NC_000014.9 scf7180000172624 99.94 True fake: scaffold gap size wrong estimation (local) 44169264 44176449 39002 31682 NC_000014.9 scf7180000172624 98.45 True fake: scaffold gap size wrong estimation (local) 44160238 44169123 48025 39138 NC_000014.9 scf7180000172624 99.93 True fake: scaffold gap size wrong estimation (local) 44156518 44158163 51327 49682 NC_000014.9 scf7180000172624 100.0 True fake: scaffold gap size wrong estimation (local) 44150270 44156284 57570 51556 NC_000014.9 scf7180000172624 99.85 True fake: scaffold gap size wrong estimation (local) 44128389 44150079 79591 57681 NC_000014.9 scf7180000172624 98.69 True fake: scaffold gap size wrong estimation (local) 44091481 44126896 116445 80949 NC_000014.9 scf7180000172624 99.75 True fake: scaffold gap size wrong estimation (local) 44090082 44090803 117582 116861 NC_000014.9 scf7180000172624 99.86 True CONTIG scf7180000172624 117589 correct 63818895 63819449 2773 3327 NC_000014.9 scf7180000172625 96.22 True fake: scaffold gap size wrong estimation (local) 63820759 63821558 4835 5655 NC_000014.9 scf7180000172625 99.38 True fake: scaffold gap size wrong estimation (local) 63823414 63824236 7405 8226 NC_000014.9 scf7180000172625 99.76 True CONTIG scf7180000172625 8226 correct 77723798 77725691 1894 1 NC_000014.9 scf7180000172626 99.89 True fake: scaffold gap size wrong estimation (local) 77721961 77722854 3702 2809 NC_000014.9 scf7180000172626 99.89 True local misassembly 77723024 77723683 4388 3729 NC_000014.9 scf7180000172626 99.7 True fake: scaffold gap size wrong estimation (local) 77719607 77721919 7335 5015 NC_000014.9 scf7180000172626 99.87 True fake: scaffold gap size wrong estimation (local) 77717036 77718729 10017 8324 NC_000014.9 scf7180000172626 99.94 True fake: scaffold gap size wrong estimation (local) 77703813 77716057 23266 10893 NC_000014.9 scf7180000172626 97.64 True local misassembly 77702275 77703321 24502 23456 NC_000014.9 scf7180000172626 99.9 True fake: scaffold gap size wrong estimation (local) 77700057 77702093 26703 24671 NC_000014.9 scf7180000172626 99.71 True fake: scaffold gap size wrong estimation (local) 77693225 77698994 33438 27694 NC_000014.9 scf7180000172626 96.56 True fake: scaffold gap size wrong estimation (local) 77691026 77692822 35629 33833 NC_000014.9 scf7180000172626 99.89 True fake: scaffold gap size wrong estimation (local) 77688843 77690853 37837 35827 NC_000014.9 scf7180000172626 99.9 True fake: scaffold gap size wrong estimation (local) 77686842 77688258 39971 38547 NC_000014.9 scf7180000172626 99.37 True CONTIG scf7180000172626 39971 correct 85907127 85908025 5 903 NC_000014.9 scf7180000172627 99.67 True fake: scaffold gap size wrong estimation (local) 85909239 85911411 2187 4359 NC_000014.9 scf7180000172627 100.0 True CONTIG scf7180000172627 4394 correct 96418773 96419773 2634 3634 NC_000014.9 scf7180000172628 99.9 True fake: scaffold gap size wrong estimation (local) 96420673 96421635 4805 5767 NC_000014.9 scf7180000172628 100.0 True fake: scaffold gap size wrong estimation (local) 96421992 96426240 5844 10262 NC_000014.9 scf7180000172628 96.33 True fake: scaffold gap size wrong estimation (local) 96427224 96428215 11327 12318 NC_000014.9 scf7180000172628 100.0 True CONTIG scf7180000172628 12318 correct 63333881 63334637 1 755 NC_000014.9 scf7180000172629 96.83 True fake: scaffold gap size wrong estimation (local) 63336942 63337634 2816 3507 NC_000014.9 scf7180000172629 97.26 True fake: scaffold gap size wrong estimation (local) 63339182 63340829 5162 6821 NC_000014.9 scf7180000172629 100.0 True fake: scaffold gap size wrong estimation (local) 63341055 63359653 7091 25682 NC_000014.9 scf7180000172629 99.18 True fake: scaffold gap size wrong estimation (local) 63359869 63379057 25847 45041 NC_000014.9 scf7180000172629 99.83 True fake: scaffold gap size wrong estimation (local) 63379850 63380408 45906 46464 NC_000014.9 scf7180000172629 100.0 True local misassembly 63380649 63381549 46465 47365 NC_000014.9 scf7180000172629 97.78 True indel: indel (<= 5bp) 63381550 63382516 47368 48334 NC_000014.9 scf7180000172629 100.0 True fake: scaffold gap size wrong estimation (local) 63382673 63384929 48583 50839 NC_000014.9 scf7180000172629 100.0 True fake: scaffold gap size wrong estimation (local) 63385087 63391530 50974 57302 NC_000014.9 scf7180000172629 98.0 True fake: scaffold gap size wrong estimation (local) 63391677 63397312 57408 63099 NC_000014.9 scf7180000172629 99.89 True CONTIG scf7180000172629 63928 correct 64376226 64376761 7 542 NC_000014.9 scf7180000172630 100.0 True fake: scaffold gap size wrong estimation (local) 64378352 64379460 2279 3387 NC_000014.9 scf7180000172630 99.91 True fake: scaffold gap size wrong estimation (local) 64383412 64384013 7659 8260 NC_000014.9 scf7180000172630 96.51 True fake: scaffold gap size wrong estimation (local) 64385163 64386650 9459 10946 NC_000014.9 scf7180000172630 99.93 True relocation, inconsistency = 23270345 87656999 87660485 10950 14436 NC_000014.9 scf7180000172630 99.94 True fake: scaffold gap size wrong estimation (local) 87660486 87664638 14876 19028 NC_000014.9 scf7180000172630 99.95 True CONTIG scf7180000172630 19028 misassembled 21187551 21188310 1 760 NC_000014.9 scf7180000172631 100.0 True fake: scaffold gap size wrong estimation (local) 21190577 21196732 2827 9010 NC_000014.9 scf7180000172631 99.72 True fake: scaffold gap size wrong estimation (local) 21196871 21198644 9170 10943 NC_000014.9 scf7180000172631 99.94 True fake: scaffold gap size wrong estimation (local) 21198842 21215897 11103 28152 NC_000014.9 scf7180000172631 99.91 True fake: scaffold gap size wrong estimation (local) 21216135 21219010 28321 31212 NC_000014.9 scf7180000172631 99.86 True fake: scaffold gap size wrong estimation (local) 21219131 21221840 31305 34130 NC_000014.9 scf7180000172631 96.29 True fake: scaffold gap size wrong estimation (local) 21221923 21222630 34223 34942 NC_000014.9 scf7180000172631 99.86 True fake: scaffold gap size wrong estimation (local) 21222877 21225217 35206 37576 NC_000014.9 scf7180000172631 99.45 True fake: scaffold gap size wrong estimation (local) 21225387 21228493 37681 40819 NC_000014.9 scf7180000172631 99.94 True fake: scaffold gap size wrong estimation (local) 21229363 21239309 41669 51611 NC_000014.9 scf7180000172631 99.8 True CONTIG scf7180000172631 51627 correct 21968787 21969677 891 1 NC_000014.9 scf7180000172632 99.55 True fake: scaffold gap size wrong estimation (local) 21965082 21966622 4189 2649 NC_000014.9 scf7180000172632 99.87 True fake: scaffold gap size wrong estimation (local) 21950202 21964996 19466 4390 NC_000014.9 scf7180000172632 98.24 True fake: scaffold gap size wrong estimation (local) 21927913 21950076 41753 19653 NC_000014.9 scf7180000172632 99.35 True fake: scaffold gap size wrong estimation (local) 21903762 21927548 66091 42048 NC_000014.9 scf7180000172632 98.65 True CONTIG scf7180000172632 66091 correct 60595666 60596616 3469 2519 NC_000014.9 scf7180000172633 99.89 True fake: scaffold gap size wrong estimation (local) 60592982 60595430 6234 3786 NC_000014.9 scf7180000172633 99.96 True indel: indel (<= 5bp) 60592005 60592852 7212 6365 NC_000014.9 scf7180000172633 99.88 True fake: scaffold gap size wrong estimation (local) 60590706 60591730 8482 7458 NC_000014.9 scf7180000172633 99.9 True fake: scaffold gap size wrong estimation (local) 60584018 60590010 15290 9192 NC_000014.9 scf7180000172633 99.65 True fake: scaffold gap size wrong estimation (local) 60571951 60583268 27115 15846 NC_000014.9 scf7180000172633 99.42 True CONTIG scf7180000172633 27370 correct 74945081 74966523 21438 1 NC_000014.9 scf7180000172634 99.8 True fake: scaffold gap size wrong estimation (local) 74944346 74944936 22126 21536 NC_000014.9 scf7180000172634 98.98 True fake: scaffold gap size wrong estimation (local) 74940882 74944084 25554 22351 NC_000014.9 scf7180000172634 99.84 True fake: scaffold gap size wrong estimation (local) 74937637 74940706 28702 25639 NC_000014.9 scf7180000172634 99.77 True fake: scaffold gap size wrong estimation (local) 74933444 74937520 32886 28810 NC_000014.9 scf7180000172634 99.95 True fake: scaffold gap size wrong estimation (local) 74932226 74933244 34093 33076 NC_000014.9 scf7180000172634 99.8 True fake: scaffold gap size wrong estimation (local) 74931247 74931920 35091 34418 NC_000014.9 scf7180000172634 99.7 True fake: scaffold gap size wrong estimation (local) 74930454 74931139 35876 35191 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74928889 74930257 37366 35998 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74926943 74928762 39382 37559 NC_000014.9 scf7180000172634 99.67 True fake: scaffold gap size wrong estimation (local) 74925836 74926470 40357 39723 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74921996 74925751 44261 40535 NC_000014.9 scf7180000172634 99.09 True fake: scaffold gap size wrong estimation (local) 74919163 74921778 47044 44429 NC_000014.9 scf7180000172634 99.92 True fake: scaffold gap size wrong estimation (local) 74913430 74918925 52869 47362 NC_000014.9 scf7180000172634 99.84 True fake: scaffold gap size wrong estimation (local) 74911149 74913341 55170 52984 NC_000014.9 scf7180000172634 99.64 True fake: scaffold gap size wrong estimation (local) 74894823 74910884 71520 55466 NC_000014.9 scf7180000172634 99.94 True fake: scaffold gap size wrong estimation (local) 74890879 74894609 75339 71609 NC_000014.9 scf7180000172634 99.87 True fake: scaffold gap size wrong estimation (local) 74889602 74890122 76441 75921 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74883296 74889387 82885 76780 NC_000014.9 scf7180000172634 99.98 True fake: scaffold gap size wrong estimation (local) 74880395 74883081 85769 83083 NC_000014.9 scf7180000172634 100.0 True indel: indel (> 5bp) 74879453 74880212 86694 85935 NC_000014.9 scf7180000172634 97.37 True fake: scaffold gap size wrong estimation (local) 74877409 74878333 88713 87789 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74875160 74877155 91006 89003 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74873200 74874265 92907 91842 NC_000014.9 scf7180000172634 100.0 True fake: scaffold gap size wrong estimation (local) 74870980 74873094 95172 93058 NC_000014.9 scf7180000172634 99.95 True fake: scaffold gap size wrong estimation (local) 74869547 74870224 96849 96172 NC_000014.9 scf7180000172634 99.85 True relocation, scaffold gap is present, inconsistency = -98705 74966274 74968164 98827 96937 NC_000014.9 scf7180000172634 99.95 True CONTIG scf7180000172634 98827 misassembled 27689532 27692295 1 2764 NC_000014.9 scf7180000172635 99.93 True relocation, inconsistency = 21019205 48711501 48713671 4935 2765 NC_000014.9 scf7180000172635 99.86 True fake: scaffold gap size wrong estimation (local) 48709069 48710634 7459 5894 NC_000014.9 scf7180000172635 99.94 True fake: scaffold gap size wrong estimation (local) 48702439 48708874 14105 7670 NC_000014.9 scf7180000172635 99.97 True fake: scaffold gap size wrong estimation (local) 48700232 48700897 16225 15560 NC_000014.9 scf7180000172635 97.75 True fake: scaffold gap size wrong estimation (local) 48691637 48699013 25137 17752 NC_000014.9 scf7180000172635 99.7 True fake: scaffold gap size wrong estimation (local) 48689352 48691502 27385 25272 NC_000014.9 scf7180000172635 98.09 True fake: scaffold gap size wrong estimation (local) 48672298 48689054 44361 27617 NC_000014.9 scf7180000172635 99.58 True CONTIG scf7180000172635 44513 misassembled 18422026 18423617 617 2208 NC_000014.9 scf7180000172636 99.56 True fake: scaffold gap size wrong estimation (local) 18424062 18425234 2647 3819 NC_000014.9 scf7180000172636 99.49 True fake: scaffold gap size wrong estimation (local) 18425235 18426940 4455 6160 NC_000014.9 scf7180000172636 99.88 True local misassembly 18426941 18428222 6352 7633 NC_000014.9 scf7180000172636 100.0 True fake: scaffold gap size wrong estimation (local) 18428910 18429930 9081 10101 NC_000014.9 scf7180000172636 99.8 True fake: scaffold gap size wrong estimation (local) 18432236 18432988 11922 12674 NC_000014.9 scf7180000172636 99.87 True CONTIG scf7180000172636 12913 correct 63578103 63585040 1236 8188 NC_000014.9 scf7180000172637 95.05 True fake: scaffold gap size wrong estimation (local) 63586382 63587746 9460 10824 NC_000014.9 scf7180000172637 99.78 True local misassembly 63587890 63588408 10825 11343 NC_000014.9 scf7180000172637 95.95 True fake: scaffold gap size wrong estimation (local) 63588667 63589265 11785 12383 NC_000014.9 scf7180000172637 100.0 True fake: scaffold gap size wrong estimation (local) 63589635 63591212 12511 14086 NC_000014.9 scf7180000172637 99.75 True fake: scaffold gap size wrong estimation (local) 63591924 63596323 14858 19136 NC_000014.9 scf7180000172637 97.16 True CONTIG scf7180000172637 19163 correct 25340895 25342064 2328 3497 NC_000014.9 scf7180000172638 100.0 True CONTIG scf7180000172638 5714 correct CONTIG scf7180000172639 2986 unaligned 27240874 27248495 9475 1750 NC_000014.9 scf7180000172640 99.75 True CONTIG scf7180000172640 9476 correct 75309955 75312839 1 2881 NC_000014.9 scf7180000172641 99.69 True fake: scaffold gap size wrong estimation (local) 75312965 75326416 3026 16478 NC_000014.9 scf7180000172641 97.74 True fake: scaffold gap size wrong estimation (local) 75326551 75327583 16572 17604 NC_000014.9 scf7180000172641 99.9 True fake: scaffold gap size wrong estimation (local) 75328152 75329918 18205 19971 NC_000014.9 scf7180000172641 99.89 True fake: scaffold gap size wrong estimation (local) 75330373 75331970 20261 21858 NC_000014.9 scf7180000172641 99.75 True fake: scaffold gap size wrong estimation (local) 75332142 75333255 21997 23110 NC_000014.9 scf7180000172641 99.82 True fake: scaffold gap size wrong estimation (local) 75333517 75335215 23405 25103 NC_000014.9 scf7180000172641 99.88 True fake: scaffold gap size wrong estimation (local) 75335442 75346408 25279 36138 NC_000014.9 scf7180000172641 98.88 True fake: scaffold gap size wrong estimation (local) 75346410 75347312 36774 37676 NC_000014.9 scf7180000172641 100.0 True fake: scaffold gap size wrong estimation (local) 75347313 75348923 38090 39700 NC_000014.9 scf7180000172641 99.88 True fake: scaffold gap size wrong estimation (local) 75349074 75358156 39748 48881 NC_000014.9 scf7180000172641 99.32 True fake: scaffold gap size wrong estimation (local) 75358847 75359868 49611 50632 NC_000014.9 scf7180000172641 97.95 True fake: scaffold gap size wrong estimation (local) 75361153 75362499 51889 53235 NC_000014.9 scf7180000172641 99.85 True CONTIG scf7180000172641 53235 correct 88073582 88074789 418 1638 NC_000014.9 scf7180000172642 99.75 True fake: scaffold gap size wrong estimation (local) 88075760 88077062 2716 4018 NC_000014.9 scf7180000172642 100.0 True fake: scaffold gap size wrong estimation (local) 88077245 88082308 4264 9328 NC_000014.9 scf7180000172642 99.9 True fake: scaffold gap size wrong estimation (local) 88082893 88089208 9900 16214 NC_000014.9 scf7180000172642 99.81 True fake: scaffold gap size wrong estimation (local) 88089333 88098793 16306 25748 NC_000014.9 scf7180000172642 99.61 True fake: scaffold gap size wrong estimation (local) 88098842 88102372 25800 29207 NC_000014.9 scf7180000172642 96.44 True fake: scaffold gap size wrong estimation (local) 88102632 88117007 29425 43814 NC_000014.9 scf7180000172642 99.87 True fake: scaffold gap size wrong estimation (local) 88117288 88120462 44001 47175 NC_000014.9 scf7180000172642 100.0 True fake: scaffold gap size wrong estimation (local) 88120777 88122435 47461 49119 NC_000014.9 scf7180000172642 99.82 True relocation, scaffold gap is present, inconsistency = 25791916 62307782 62325893 70369 52087 NC_000014.9 scf7180000172642 98.9 True fake: scaffold gap size wrong estimation (local) 62303528 62305923 74380 71848 NC_000014.9 scf7180000172642 99.79 True fake: scaffold gap size wrong estimation (local) 62290131 62303351 87657 74512 NC_000014.9 scf7180000172642 99.25 True relocation, inconsistency = 1280731 61007321 61009399 89756 87658 NC_000014.9 scf7180000172642 98.96 True fake: scaffold gap size wrong estimation (local) 60998370 61004533 98431 92237 NC_000014.9 scf7180000172642 99.95 True fake: scaffold gap size wrong estimation (local) 60997278 60998197 99968 99049 NC_000014.9 scf7180000172642 99.89 True CONTIG scf7180000172642 99972 misassembled 75801513 75802588 1076 1 NC_000014.9 scf7180000172643 99.63 True fake: scaffold gap size wrong estimation (local) 75798056 75799471 4285 2870 NC_000014.9 scf7180000172643 99.79 True fake: scaffold gap size wrong estimation (local) 75796428 75797062 6004 5370 NC_000014.9 scf7180000172643 96.85 True local misassembly 75795145 75795987 6847 6005 NC_000014.9 scf7180000172643 100.0 True fake: scaffold gap size wrong estimation (local) 75792356 75794454 9724 7622 NC_000014.9 scf7180000172643 99.67 True fake: scaffold gap size wrong estimation (local) 75791106 75792030 10983 10059 NC_000014.9 scf7180000172643 100.0 True fake: scaffold gap size wrong estimation (local) 75773964 75790844 28059 11169 NC_000014.9 scf7180000172643 99.84 True fake: scaffold gap size wrong estimation (local) 75771397 75773699 30787 28479 NC_000014.9 scf7180000172643 99.52 True fake: scaffold gap size wrong estimation (local) 75770174 75771205 31972 30941 NC_000014.9 scf7180000172643 97.97 True fake: scaffold gap size wrong estimation (local) 75748293 75769961 53798 32150 NC_000014.9 scf7180000172643 98.08 True fake: scaffold gap size wrong estimation (local) 75743822 75746621 58128 55330 NC_000014.9 scf7180000172643 99.89 True fake: scaffold gap size wrong estimation (local) 75728277 75743681 73560 58241 NC_000014.9 scf7180000172643 99.25 True fake: scaffold gap size wrong estimation (local) 75694564 75728105 107093 73723 NC_000014.9 scf7180000172643 99.25 True fake: scaffold gap size wrong estimation (local) 75687554 75694411 114186 107328 NC_000014.9 scf7180000172643 99.84 True fake: scaffold gap size wrong estimation (local) 75682194 75687364 119502 114316 NC_000014.9 scf7180000172643 97.8 True fake: scaffold gap size wrong estimation (local) 75680840 75682002 120928 119766 NC_000014.9 scf7180000172643 99.91 True fake: scaffold gap size wrong estimation (local) 75674843 75680636 126891 121083 NC_000014.9 scf7180000172643 99.86 True relocation, inconsistency = -24005720 99679374 99680562 128081 126892 NC_000014.9 scf7180000172643 99.92 True CONTIG scf7180000172643 128081 misassembled 53261213 53261966 2405 3158 NC_000014.9 scf7180000172644 100.0 True fake: scaffold gap size wrong estimation (local) 53262257 53266432 3486 7662 NC_000014.9 scf7180000172644 99.9 True CONTIG scf7180000172644 7662 correct 25328604 25336241 10018 2149 NC_000014.9 scf7180000172645 98.55 True fake: scaffold gap size wrong estimation (local) 25326215 25327054 12171 11332 NC_000014.9 scf7180000172645 100.0 True CONTIG scf7180000172645 12171 correct 96468518 96469335 2405 3222 NC_000014.9 scf7180000172646 100.0 True fake: scaffold gap size wrong estimation (local) 96470060 96472259 4031 6247 NC_000014.9 scf7180000172646 99.91 True fake: scaffold gap size wrong estimation (local) 96473375 96474446 7297 8368 NC_000014.9 scf7180000172646 100.0 True indel: indel (<= 5bp) 96474450 96475779 8369 9698 NC_000014.9 scf7180000172646 98.5 True fake: scaffold gap size wrong estimation (local) 96476523 96479023 10460 12954 NC_000014.9 scf7180000172646 99.76 True fake: scaffold gap size wrong estimation (local) 96480273 96481443 14163 15333 NC_000014.9 scf7180000172646 100.0 True CONTIG scf7180000172646 15350 correct 63810223 63810926 2157 2858 NC_000014.9 scf7180000172647 99.72 True fake: scaffold gap size wrong estimation (local) 63812099 63813603 4083 5618 NC_000014.9 scf7180000172647 98.94 True fake: scaffold gap size wrong estimation (local) 63815320 63815966 7460 8106 NC_000014.9 scf7180000172647 99.85 True fake: scaffold gap size wrong estimation (local) 63816731 63817793 9253 10315 NC_000014.9 scf7180000172647 100.0 True CONTIG scf7180000172647 10315 correct 34777886 34784106 9230 3030 NC_000014.9 scf7180000172648 99.6 True fake: scaffold gap size wrong estimation (local) 34775090 34777536 11965 9519 NC_000014.9 scf7180000172648 99.92 True relocation, scaffold gap is present, inconsistency = -20207026 54981075 54982074 13008 12007 NC_000014.9 scf7180000172648 99.7 True fake: scaffold gap size wrong estimation (local) 54978494 54979247 15187 14434 NC_000014.9 scf7180000172648 99.6 True CONTIG scf7180000172648 15239 misassembled 34877747 34878684 1218 281 NC_000014.9 scf7180000172649 99.89 True fake: scaffold gap size wrong estimation (local) 34871829 34876625 7332 2504 NC_000014.9 scf7180000172649 99.79 True fake: scaffold gap size wrong estimation (local) 34865019 34871660 14184 7445 NC_000014.9 scf7180000172649 99.48 True fake: scaffold gap size wrong estimation (local) 34863402 34864572 15857 14387 NC_000014.9 scf7180000172649 99.57 True fake: scaffold gap size wrong estimation (local) 34860806 34863010 18267 16063 NC_000014.9 scf7180000172649 99.91 True fake: scaffold gap size wrong estimation (local) 34858721 34860524 20375 18574 NC_000014.9 scf7180000172649 99.89 True fake: scaffold gap size wrong estimation (local) 34857266 34858541 21852 20576 NC_000014.9 scf7180000172649 99.92 True fake: scaffold gap size wrong estimation (local) 34855024 34856303 24060 22781 NC_000014.9 scf7180000172649 100.0 True fake: scaffold gap size wrong estimation (local) 34852115 34854874 26905 24146 NC_000014.9 scf7180000172649 99.93 True fake: scaffold gap size wrong estimation (local) 34847111 34851864 31849 27063 NC_000014.9 scf7180000172649 99.6 True fake: scaffold gap size wrong estimation (local) 34845864 34846872 33132 32124 NC_000014.9 scf7180000172649 99.9 True fake: scaffold gap size wrong estimation (local) 34844534 34845283 34375 33626 NC_000014.9 scf7180000172649 99.87 True fake: scaffold gap size wrong estimation (local) 34841574 34843949 37383 35008 NC_000014.9 scf7180000172649 99.12 True fake: scaffold gap size wrong estimation (local) 34839920 34840727 39199 38392 NC_000014.9 scf7180000172649 99.88 True CONTIG scf7180000172649 39199 correct 28251480 28252049 588 19 NC_000014.9 scf7180000172650 100.0 True fake: scaffold gap size wrong estimation (local) 28244161 28249714 7778 2225 NC_000014.9 scf7180000172650 99.89 True fake: scaffold gap size wrong estimation (local) 28218067 28244035 34265 8254 NC_000014.9 scf7180000172650 99.72 True CONTIG scf7180000172650 34742 correct 66667147 66668275 1129 1 NC_000014.9 scf7180000172651 100.0 True fake: scaffold gap size wrong estimation (local) 66631319 66664973 36824 3074 NC_000014.9 scf7180000172651 99.82 True fake: scaffold gap size wrong estimation (local) 66629176 66631082 39017 37113 NC_000014.9 scf7180000172651 99.74 True fake: scaffold gap size wrong estimation (local) 66621359 66628922 46711 39188 NC_000014.9 scf7180000172651 99.15 True CONTIG scf7180000172651 47289 correct 64408241 64412649 1 4435 NC_000014.9 scf7180000172652 96.44 True fake: scaffold gap size wrong estimation (local) 64412763 64413953 4527 5853 NC_000014.9 scf7180000172652 99.75 True fake: scaffold gap size wrong estimation (local) 64414868 64418458 6518 10225 NC_000014.9 scf7180000172652 99.03 True fake: scaffold gap size wrong estimation (local) 64418822 64421638 10573 13389 NC_000014.9 scf7180000172652 99.89 True fake: scaffold gap size wrong estimation (local) 64421847 64423646 13521 15320 NC_000014.9 scf7180000172652 99.89 True fake: scaffold gap size wrong estimation (local) 64423968 64425225 15644 16901 NC_000014.9 scf7180000172652 100.0 True local misassembly 64425467 64426505 16902 17940 NC_000014.9 scf7180000172652 98.08 True fake: scaffold gap size wrong estimation (local) 64426742 64428105 18342 19705 NC_000014.9 scf7180000172652 100.0 True fake: scaffold gap size wrong estimation (local) 64430528 64431081 21740 22293 NC_000014.9 scf7180000172652 100.0 True CONTIG scf7180000172652 22293 correct 67178073 67183671 1845 7419 NC_000014.9 scf7180000172653 99.17 True fake: scaffold gap size wrong estimation (local) 67184033 67189852 7700 13519 NC_000014.9 scf7180000172653 99.95 True fake: scaffold gap size wrong estimation (local) 67190405 67195756 14017 19307 NC_000014.9 scf7180000172653 96.05 True fake: scaffold gap size wrong estimation (local) 67196015 67203802 19518 27305 NC_000014.9 scf7180000172653 100.0 True fake: scaffold gap size wrong estimation (local) 67203982 67206451 27490 29959 NC_000014.9 scf7180000172653 99.96 True fake: scaffold gap size wrong estimation (local) 67206823 67209569 30403 33168 NC_000014.9 scf7180000172653 99.96 True fake: scaffold gap size wrong estimation (local) 67210956 67213184 34560 36748 NC_000014.9 scf7180000172653 98.19 True fake: scaffold gap size wrong estimation (local) 67214995 67216985 38384 40374 NC_000014.9 scf7180000172653 100.0 True fake: scaffold gap size wrong estimation (local) 67217099 67223014 40519 46432 NC_000014.9 scf7180000172653 99.93 True fake: scaffold gap size wrong estimation (local) 67223271 67226271 46784 49872 NC_000014.9 scf7180000172653 97.3 True fake: scaffold gap size wrong estimation (local) 67226634 67227187 50114 50667 NC_000014.9 scf7180000172653 100.0 True fake: scaffold gap size wrong estimation (local) 67227448 67231878 51100 55330 NC_000014.9 scf7180000172653 95.42 True fake: scaffold gap size wrong estimation (local) 67231971 67233049 55461 56539 NC_000014.9 scf7180000172653 100.0 True CONTIG scf7180000172653 56811 correct 57727157 57727699 1376 834 NC_000014.9 scf7180000172654 99.45 True fake: scaffold gap size wrong estimation (local) 57724304 57724990 3571 2885 NC_000014.9 scf7180000172654 99.56 True relocation, scaffold gap is present, inconsistency = 30606348 27116630 27117935 3592 4912 NC_000014.9 scf7180000172654 99.69 True fake: scaffold gap size wrong estimation (local) 27118948 27137302 5851 24201 NC_000014.9 scf7180000172654 99.69 True fake: scaffold gap size wrong estimation (local) 27137620 27146791 24444 33625 NC_000014.9 scf7180000172654 99.79 True indel: indel (<= 5bp) 27146845 27168442 33674 55458 NC_000014.9 scf7180000172654 99.26 True fake: scaffold gap size wrong estimation (local) 27171238 27192879 57953 79618 NC_000014.9 scf7180000172654 99.8 True fake: scaffold gap size wrong estimation (local) 27193600 27210723 80192 97318 NC_000014.9 scf7180000172654 99.8 True fake: scaffold gap size wrong estimation (local) 27210943 27213906 97439 100402 NC_000014.9 scf7180000172654 100.0 True fake: scaffold gap size wrong estimation (local) 27215227 27219397 101534 105684 NC_000014.9 scf7180000172654 99.42 True fake: scaffold gap size wrong estimation (local) 27219542 27221320 105904 107682 NC_000014.9 scf7180000172654 99.89 True fake: scaffold gap size wrong estimation (local) 27221702 27224317 108014 110629 NC_000014.9 scf7180000172654 100.0 True fake: scaffold gap size wrong estimation (local) 27225096 27232808 111276 118988 NC_000014.9 scf7180000172654 99.92 True fake: scaffold gap size wrong estimation (local) 27232929 27238168 119110 124367 NC_000014.9 scf7180000172654 99.94 True CONTIG scf7180000172654 124367 misassembled 18260473 18261192 3983 3264 NC_000014.9 scf7180000172655 99.86 True unknown 18259464 18260095 5158 4527 NC_000014.9 scf7180000172655 98.42 True unknown 18256027 18257839 8734 6922 NC_000014.9 scf7180000172655 99.56 True unknown 18253042 18254392 11506 10156 NC_000014.9 scf7180000172655 100.0 True unknown CONTIG scf7180000172655 11506 mis_unaligned CONTIG scf7180000172656 2956 unaligned 75010956 75017324 468 6840 NC_000014.9 scf7180000172657 99.87 True fake: scaffold gap size wrong estimation (local) 75018100 75019164 7478 8543 NC_000014.9 scf7180000172657 99.62 True fake: scaffold gap size wrong estimation (local) 75019434 75020853 8725 10144 NC_000014.9 scf7180000172657 99.93 True fake: scaffold gap size wrong estimation (local) 75021101 75024241 10528 13668 NC_000014.9 scf7180000172657 99.84 True fake: scaffold gap size wrong estimation (local) 75024424 75026875 13787 16238 NC_000014.9 scf7180000172657 99.76 True fake: scaffold gap size wrong estimation (local) 75027693 75028478 16972 17756 NC_000014.9 scf7180000172657 99.75 True fake: scaffold gap size wrong estimation (local) 75029627 75031762 18795 20930 NC_000014.9 scf7180000172657 99.86 True fake: scaffold gap size wrong estimation (local) 75031763 75032868 21432 22537 NC_000014.9 scf7180000172657 99.91 True fake: scaffold gap size wrong estimation (local) 75032869 75034017 22578 23726 NC_000014.9 scf7180000172657 100.0 True fake: scaffold gap size wrong estimation (local) 75034152 75034892 24082 24820 NC_000014.9 scf7180000172657 99.73 True fake: scaffold gap size wrong estimation (local) 75035491 75036357 25315 26181 NC_000014.9 scf7180000172657 99.88 True fake: scaffold gap size wrong estimation (local) 75036618 75037808 26359 27549 NC_000014.9 scf7180000172657 99.83 True fake: scaffold gap size wrong estimation (local) 75038076 75038836 28018 28778 NC_000014.9 scf7180000172657 99.74 True fake: scaffold gap size wrong estimation (local) 75039122 75039861 28923 29658 NC_000014.9 scf7180000172657 99.32 True fake: scaffold gap size wrong estimation (local) 75040485 75042828 30341 32684 NC_000014.9 scf7180000172657 99.87 True fake: scaffold gap size wrong estimation (local) 75043045 75043843 32895 33693 NC_000014.9 scf7180000172657 100.0 True fake: scaffold gap size wrong estimation (local) 75043991 75051943 33780 41740 NC_000014.9 scf7180000172657 99.55 True fake: scaffold gap size wrong estimation (local) 75052217 75055084 41914 44781 NC_000014.9 scf7180000172657 99.93 True CONTIG scf7180000172657 44781 correct 69166270 69167140 3472 2602 NC_000014.9 scf7180000172658 99.77 True relocation, scaffold gap is present, inconsistency = 4886332 64274114 64277385 6025 9263 NC_000014.9 scf7180000172658 98.74 True fake: scaffold gap size wrong estimation (local) 64277635 64283559 9528 15478 NC_000014.9 scf7180000172658 99.8 True fake: scaffold gap size wrong estimation (local) 64283978 64284512 15874 16408 NC_000014.9 scf7180000172658 100.0 True fake: scaffold gap size wrong estimation (local) 64285832 64286901 17541 18610 NC_000014.9 scf7180000172658 98.5 True fake: scaffold gap size wrong estimation (local) 64286988 64288349 18741 20102 NC_000014.9 scf7180000172658 100.0 True fake: scaffold gap size wrong estimation (local) 64289416 64295838 21130 27540 NC_000014.9 scf7180000172658 99.74 True fake: scaffold gap size wrong estimation (local) 64296052 64302174 27717 34094 NC_000014.9 scf7180000172658 96.56 True fake: scaffold gap size wrong estimation (local) 64302958 64304744 34870 36656 NC_000014.9 scf7180000172658 100.0 True CONTIG scf7180000172658 36664 misassembled 18231884 18233564 1634 3314 NC_000014.9 scf7180000172659 99.82 True unknown 18234608 18236227 4534 6153 NC_000014.9 scf7180000172659 99.57 True unknown CONTIG scf7180000172659 7700 mis_unaligned 103770499 103772689 3991 6110 NC_000014.9 scf7180000172660 96.33 True fake: scaffold gap size wrong estimation (local) 103772928 103775280 6340 8692 NC_000014.9 scf7180000172660 99.79 True fake: scaffold gap size wrong estimation (local) 103775465 103776630 8889 10043 NC_000014.9 scf7180000172660 98.87 True fake: scaffold gap size wrong estimation (local) 103777062 103777978 10289 11205 NC_000014.9 scf7180000172660 100.0 True fake: scaffold gap size wrong estimation (local) 103778425 103780070 11716 13360 NC_000014.9 scf7180000172660 99.76 True fake: scaffold gap size wrong estimation (local) 103781812 103782979 14891 16058 NC_000014.9 scf7180000172660 99.91 True fake: scaffold gap size wrong estimation (local) 103784597 103785535 17639 18577 NC_000014.9 scf7180000172660 99.89 True CONTIG scf7180000172660 23422 correct 77743193 77744107 1 914 NC_000014.9 scf7180000172661 99.67 True fake: scaffold gap size wrong estimation (local) 77745808 77747033 2584 3809 NC_000014.9 scf7180000172661 100.0 True fake: scaffold gap size wrong estimation (local) 77748867 77753851 5458 10410 NC_000014.9 scf7180000172661 99.15 True fake: scaffold gap size wrong estimation (local) 77754314 77758202 10957 14957 NC_000014.9 scf7180000172661 97.52 True fake: scaffold gap size wrong estimation (local) 77758330 77762252 15060 18982 NC_000014.9 scf7180000172661 99.9 True fake: scaffold gap size wrong estimation (local) 77763075 77764885 19749 21559 NC_000014.9 scf7180000172661 100.0 True CONTIG scf7180000172661 21559 correct 18267866 18268407 623 1164 NC_000014.9 scf7180000172662 99.45 True local misassembly 18270499 18271761 1380 2642 NC_000014.9 scf7180000172662 99.76 True local misassembly 18271933 18272809 2643 3519 NC_000014.9 scf7180000172662 99.66 True fake: scaffold gap size wrong estimation (local) 18276576 18277673 7299 8396 NC_000014.9 scf7180000172662 99.91 True CONTIG scf7180000172662 11053 correct 104656374 104657027 638 6 NC_000014.9 scf7180000172663 96.79 True fake: scaffold gap size wrong estimation (local) 104653547 104654875 3696 2369 NC_000014.9 scf7180000172663 99.85 True fake: scaffold gap size wrong estimation (local) 104649470 104653391 7826 3905 NC_000014.9 scf7180000172663 99.9 True fake: scaffold gap size wrong estimation (local) 104645867 104649351 11464 7992 NC_000014.9 scf7180000172663 98.19 True fake: scaffold gap size wrong estimation (local) 104632035 104645693 25252 11769 NC_000014.9 scf7180000172663 98.4 True fake: scaffold gap size wrong estimation (local) 104628963 104631981 28282 25397 NC_000014.9 scf7180000172663 95.47 True fake: scaffold gap size wrong estimation (local) 104623099 104628660 34320 28875 NC_000014.9 scf7180000172663 96.75 True CONTIG scf7180000172663 35837 correct 67065277 67066129 150 1002 NC_000014.9 scf7180000172664 100.0 True fake: scaffold gap size wrong estimation (local) 67067773 67068745 2637 3609 NC_000014.9 scf7180000172664 100.0 True fake: scaffold gap size wrong estimation (local) 67072699 67075579 6666 9546 NC_000014.9 scf7180000172664 100.0 True fake: scaffold gap size wrong estimation (local) 67076105 67086430 10365 20690 NC_000014.9 scf7180000172664 99.98 True fake: scaffold gap size wrong estimation (local) 67087041 67095411 21222 29598 NC_000014.9 scf7180000172664 99.99 True fake: scaffold gap size wrong estimation (local) 67095981 67098636 30132 32887 NC_000014.9 scf7180000172664 97.68 True fake: scaffold gap size wrong estimation (local) 67098755 67101877 33021 36084 NC_000014.9 scf7180000172664 98.03 True fake: scaffold gap size wrong estimation (local) 67102119 67115494 36352 49681 NC_000014.9 scf7180000172664 99.54 True fake: scaffold gap size wrong estimation (local) 67115666 67119561 49890 53913 NC_000014.9 scf7180000172664 97.25 True fake: scaffold gap size wrong estimation (local) 67119873 67123419 54192 57738 NC_000014.9 scf7180000172664 99.97 True CONTIG scf7180000172664 57738 correct 18521891 18522542 180 831 NC_000014.9 scf7180000172665 100.0 True unknown 18482111 18483094 2748 1813 NC_000014.9 scf7180000172665 95.02 True unknown 18444833 18445610 6366 5589 NC_000014.9 scf7180000172665 99.36 True unknown 18442167 18442734 8664 8097 NC_000014.9 scf7180000172665 99.65 True unknown CONTIG scf7180000172665 10530 mis_unaligned 106053287 106053992 815 110 NC_000014.9 scf7180000172666 99.86 True fake: scaffold gap size wrong estimation (local) 106050832 106051475 3873 3230 NC_000014.9 scf7180000172666 99.53 True fake: scaffold gap size wrong estimation (local) 106047906 106049705 6417 4619 NC_000014.9 scf7180000172666 99.0 True CONTIG scf7180000172666 6417 correct 71675376 71676481 1106 1 NC_000014.9 scf7180000172667 100.0 True indel: indel (> 5bp) 71674819 71675352 1640 1107 NC_000014.9 scf7180000172667 96.25 True local misassembly 71673582 71674589 2648 1641 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71657319 71673265 18866 3036 NC_000014.9 scf7180000172667 99.15 True fake: scaffold gap size wrong estimation (local) 71646363 71657109 29716 19017 NC_000014.9 scf7180000172667 99.16 True fake: scaffold gap size wrong estimation (local) 71641680 71646180 34436 29902 NC_000014.9 scf7180000172667 99.65 True fake: scaffold gap size wrong estimation (local) 71640899 71641459 35123 34563 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71640161 71640681 35938 35418 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71637692 71639926 38361 36127 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71635129 71637018 40974 39085 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71620340 71634141 55768 41904 NC_000014.9 scf7180000172667 99.25 True fake: scaffold gap size wrong estimation (local) 71615929 71620194 60133 55868 NC_000014.9 scf7180000172667 99.98 True fake: scaffold gap size wrong estimation (local) 71614221 71615787 61826 60260 NC_000014.9 scf7180000172667 100.0 True fake: scaffold gap size wrong estimation (local) 71604059 71614075 71905 61933 NC_000014.9 scf7180000172667 99.5 True fake: scaffold gap size wrong estimation (local) 71599494 71603620 76415 72301 NC_000014.9 scf7180000172667 99.49 True fake: scaffold gap size wrong estimation (local) 71577747 71599277 98060 76544 NC_000014.9 scf7180000172667 99.78 True fake: scaffold gap size wrong estimation (local) 71571871 71576888 103943 98926 NC_000014.9 scf7180000172667 99.94 True CONTIG scf7180000172667 103943 correct 23124691 23132651 50 8021 NC_000014.9 scf7180000172668 100.0 True fake: scaffold gap size wrong estimation (local) 23132876 23133446 8120 8690 NC_000014.9 scf7180000172668 99.82 True fake: scaffold gap size wrong estimation (local) 23133610 23134268 8786 9444 NC_000014.9 scf7180000172668 99.7 True fake: scaffold gap size wrong estimation (local) 23134484 23135179 9575 10270 NC_000014.9 scf7180000172668 100.0 True fake: scaffold gap size wrong estimation (local) 23135335 23141227 10668 16409 NC_000014.9 scf7180000172668 97.31 True fake: scaffold gap size wrong estimation (local) 23141724 23144947 18614 21836 NC_000014.9 scf7180000172668 99.88 True fake: scaffold gap size wrong estimation (local) 23145548 23148264 22219 24950 NC_000014.9 scf7180000172668 99.27 True fake: scaffold gap size wrong estimation (local) 23148509 23151756 25213 28460 NC_000014.9 scf7180000172668 99.94 True fake: scaffold gap size wrong estimation (local) 23151981 23156022 28627 32669 NC_000014.9 scf7180000172668 99.75 True fake: scaffold gap size wrong estimation (local) 23156260 23158395 32922 35057 NC_000014.9 scf7180000172668 99.95 True fake: scaffold gap size wrong estimation (local) 23158616 23160359 35196 36939 NC_000014.9 scf7180000172668 99.83 True fake: scaffold gap size wrong estimation (local) 23160579 23161701 37049 38185 NC_000014.9 scf7180000172668 98.68 True fake: scaffold gap size wrong estimation (local) 23161934 23164839 38382 41312 NC_000014.9 scf7180000172668 99.69 True fake: scaffold gap size wrong estimation (local) 23164974 23169469 41400 45898 NC_000014.9 scf7180000172668 99.71 True CONTIG scf7180000172668 45898 correct 35588017 35598479 364 10826 NC_000014.9 scf7180000172669 99.97 True fake: scaffold gap size wrong estimation (local) 35598681 35608985 10945 21250 NC_000014.9 scf7180000172669 99.99 True fake: scaffold gap size wrong estimation (local) 35609229 35610308 21399 22478 NC_000014.9 scf7180000172669 100.0 True fake: scaffold gap size wrong estimation (local) 35611534 35612249 22826 23541 NC_000014.9 scf7180000172669 100.0 True fake: scaffold gap size wrong estimation (local) 35612811 35617368 24801 29339 NC_000014.9 scf7180000172669 99.52 True fake: scaffold gap size wrong estimation (local) 35617659 35620344 29606 32199 NC_000014.9 scf7180000172669 96.47 True relocation, scaffold gap is present, inconsistency = 6290278 41911378 41964393 86054 32955 NC_000014.9 scf7180000172669 99.25 True fake: scaffold gap size wrong estimation (local) 41910048 41910556 87596 87088 NC_000014.9 scf7180000172669 96.66 True fake: scaffold gap size wrong estimation (local) 41896988 41906340 103372 94024 NC_000014.9 scf7180000172669 99.89 True fake: scaffold gap size wrong estimation (local) 41890723 41896887 109656 103491 NC_000014.9 scf7180000172669 99.92 True fake: scaffold gap size wrong estimation (local) 41880199 41889955 120308 110386 NC_000014.9 scf7180000172669 98.83 True fake: scaffold gap size wrong estimation (local) 41876566 41879922 123818 120462 NC_000014.9 scf7180000172669 99.94 True fake: scaffold gap size wrong estimation (local) 41863020 41876292 137279 124012 NC_000014.9 scf7180000172669 99.86 True fake: scaffold gap size wrong estimation (local) 41856958 41862879 143299 137378 NC_000014.9 scf7180000172669 99.9 True fake: scaffold gap size wrong estimation (local) 41854318 41856666 145889 143541 NC_000014.9 scf7180000172669 99.87 True fake: scaffold gap size wrong estimation (local) 41844437 41854194 155779 146008 NC_000014.9 scf7180000172669 99.69 True fake: scaffold gap size wrong estimation (local) 41820310 41844217 179802 155926 NC_000014.9 scf7180000172669 99.61 True fake: scaffold gap size wrong estimation (local) 41805715 41820040 194014 179994 NC_000014.9 scf7180000172669 97.54 True fake: scaffold gap size wrong estimation (local) 41804003 41805488 195706 194221 NC_000014.9 scf7180000172669 99.93 True fake: scaffold gap size wrong estimation (local) 41795712 41803903 204047 195856 NC_000014.9 scf7180000172669 99.95 True fake: scaffold gap size wrong estimation (local) 41784632 41795228 215115 204421 NC_000014.9 scf7180000172669 99.86 True CONTIG scf7180000172669 215118 misassembled 67709703 67710344 2958 2317 NC_000014.9 scf7180000172670 99.85 True relocation, inconsistency = 25051950 42657004 42657752 2959 3707 NC_000014.9 scf7180000172670 100.0 True CONTIG scf7180000172670 6160 misassembled 102348125 102349039 2569 1652 NC_000014.9 scf7180000172671 99.46 True fake: scaffold gap size wrong estimation (local) 102343571 102344945 7673 6299 NC_000014.9 scf7180000172671 99.85 True CONTIG scf7180000172671 7673 correct 90826077 90827472 1396 1 NC_000014.9 scf7180000172672 99.57 True fake: scaffold gap size wrong estimation (local) 90823645 90824579 3941 3013 NC_000014.9 scf7180000172672 98.29 True fake: scaffold gap size wrong estimation (local) 90819458 90823297 7977 4078 NC_000014.9 scf7180000172672 99.71 True fake: scaffold gap size wrong estimation (local) 90816459 90819314 10914 8081 NC_000014.9 scf7180000172672 98.87 True fake: scaffold gap size wrong estimation (local) 90804262 90816312 23048 10999 NC_000014.9 scf7180000172672 99.83 True fake: scaffold gap size wrong estimation (local) 90803111 90804130 24220 23201 NC_000014.9 scf7180000172672 100.0 True fake: scaffold gap size wrong estimation (local) 90800060 90800575 27105 26590 NC_000014.9 scf7180000172672 99.81 True fake: scaffold gap size wrong estimation (local) 90798712 90799860 28562 27414 NC_000014.9 scf7180000172672 100.0 True fake: scaffold gap size wrong estimation (local) 90797365 90798581 29887 28671 NC_000014.9 scf7180000172672 99.51 True fake: scaffold gap size wrong estimation (local) 90794434 90796866 32837 30405 NC_000014.9 scf7180000172672 99.63 True fake: scaffold gap size wrong estimation (local) 90789886 90793268 37212 33973 NC_000014.9 scf7180000172672 95.27 True fake: scaffold gap size wrong estimation (local) 90786805 90788713 40174 38266 NC_000014.9 scf7180000172672 99.84 True fake: scaffold gap size wrong estimation (local) 90782565 90786668 44355 40312 NC_000014.9 scf7180000172672 98.41 True fake: scaffold gap size wrong estimation (local) 90780354 90782378 46609 44587 NC_000014.9 scf7180000172672 99.8 True fake: scaffold gap size wrong estimation (local) 90756670 90779455 70241 47464 NC_000014.9 scf7180000172672 95.41 True fake: scaffold gap size wrong estimation (local) 90749678 90756379 77136 70431 NC_000014.9 scf7180000172672 99.73 True fake: scaffold gap size wrong estimation (local) 90748508 90749419 78189 77278 NC_000014.9 scf7180000172672 100.0 True fake: scaffold gap size wrong estimation (local) 90745984 90748395 80756 78345 NC_000014.9 scf7180000172672 99.96 True fake: scaffold gap size wrong estimation (local) 90740755 90745700 86013 81034 NC_000014.9 scf7180000172672 99.43 True fake: scaffold gap size wrong estimation (local) 90737780 90740498 89051 86240 NC_000014.9 scf7180000172672 97.31 True fake: scaffold gap size wrong estimation (local) 90735704 90736430 90963 90237 NC_000014.9 scf7180000172672 100.0 True fake: scaffold gap size wrong estimation (local) 90717294 90734783 109653 92009 NC_000014.9 scf7180000172672 98.66 True fake: scaffold gap size wrong estimation (local) 90714733 90717088 112201 109846 NC_000014.9 scf7180000172672 99.92 True fake: scaffold gap size wrong estimation (local) 90713341 90713970 113486 112857 NC_000014.9 scf7180000172672 99.84 True fake: scaffold gap size wrong estimation (local) 90710847 90713276 116056 113627 NC_000014.9 scf7180000172672 99.92 True CONTIG scf7180000172672 116266 correct 86173342 86174541 1200 1 NC_000014.9 scf7180000172673 99.83 True fake: scaffold gap size wrong estimation (local) 86170874 86172281 3702 2295 NC_000014.9 scf7180000172673 99.93 True fake: scaffold gap size wrong estimation (local) 86161244 86169943 13268 4563 NC_000014.9 scf7180000172673 99.75 True fake: scaffold gap size wrong estimation (local) 86158164 86161015 16310 13459 NC_000014.9 scf7180000172673 99.89 True fake: scaffold gap size wrong estimation (local) 86152084 86158095 22583 16526 NC_000014.9 scf7180000172673 97.51 True fake: scaffold gap size wrong estimation (local) 86136546 86152062 38140 22637 NC_000014.9 scf7180000172673 96.69 True fake: scaffold gap size wrong estimation (local) 86130317 86136568 44932 38664 NC_000014.9 scf7180000172673 99.9 True relocation, inconsistency = 21787442 64340358 64342724 47449 45083 NC_000014.9 scf7180000172673 99.87 True fake: scaffold gap size wrong estimation (local) 64336041 64339671 52147 48517 NC_000014.9 scf7180000172673 99.92 True fake: scaffold gap size wrong estimation (local) 64333527 64335798 54634 52424 NC_000014.9 scf7180000172673 96.52 True fake: scaffold gap size wrong estimation (local) 64330431 64332537 58102 55977 NC_000014.9 scf7180000172673 99.95 True fake: scaffold gap size wrong estimation (local) 64328157 64329618 60580 59119 NC_000014.9 scf7180000172673 98.56 True fake: scaffold gap size wrong estimation (local) 64320896 64327313 67672 61377 NC_000014.9 scf7180000172673 96.07 True fake: scaffold gap size wrong estimation (local) 64318562 64320651 70197 68086 NC_000014.9 scf7180000172673 99.47 True CONTIG scf7180000172673 72453 misassembled 104492848 104494204 494 1850 NC_000014.9 scf7180000172674 99.71 True fake: scaffold gap size wrong estimation (local) 104494451 104497689 2139 5376 NC_000014.9 scf7180000172674 99.41 True fake: scaffold gap size wrong estimation (local) 104498221 104498774 5984 6537 NC_000014.9 scf7180000172674 98.19 True fake: scaffold gap size wrong estimation (extensive) 104498915 104518389 15976 35390 NC_000014.9 scf7180000172674 99.51 True fake: scaffold gap size wrong estimation (local) 104518505 104526235 35493 43244 NC_000014.9 scf7180000172674 99.51 True fake: scaffold gap size wrong estimation (local) 104526325 104532936 43396 49973 NC_000014.9 scf7180000172674 98.73 True fake: scaffold gap size wrong estimation (local) 104533173 104535473 50225 52439 NC_000014.9 scf7180000172674 95.84 True fake: scaffold gap size wrong estimation (local) 104535667 104538903 52653 55889 NC_000014.9 scf7180000172674 99.75 True fake: scaffold gap size wrong estimation (local) 104539461 104548731 56372 65588 NC_000014.9 scf7180000172674 99.21 True fake: scaffold gap size wrong estimation (local) 104548857 104568286 65672 85027 NC_000014.9 scf7180000172674 99.52 True fake: scaffold gap size wrong estimation (local) 104568502 104606240 85174 122911 NC_000014.9 scf7180000172674 99.9 True fake: scaffold gap size wrong estimation (local) 104606414 104614695 123053 131446 NC_000014.9 scf7180000172674 98.54 True fake: not a misassembly (possible transposable element) 101117735 101119246 132978 131467 NC_000014.9 scf7180000172674 99.55 True fake: not a misassembly (possible transposable element) 104614567 104621662 132979 140214 NC_000014.9 scf7180000172674 98.03 True CONTIG scf7180000172674 140214 correct 102043285 102045085 3909 2109 NC_000014.9 scf7180000172675 99.94 True fake: scaffold gap size wrong estimation (local) 102037381 102043031 9941 4216 NC_000014.9 scf7180000172675 98.83 True fake: scaffold gap size wrong estimation (local) 102035134 102036998 12249 10385 NC_000014.9 scf7180000172675 98.82 True fake: scaffold gap size wrong estimation (local) 102031870 102034726 15497 12641 NC_000014.9 scf7180000172675 99.82 True fake: scaffold gap size wrong estimation (local) 102025588 102031744 21586 15609 NC_000014.9 scf7180000172675 96.97 True CONTIG scf7180000172675 21595 correct 102565466 102566683 1307 90 NC_000014.9 scf7180000172676 99.75 True fake: scaffold gap size wrong estimation (local) 102563721 102564473 3331 2579 NC_000014.9 scf7180000172676 97.21 True fake: scaffold gap size wrong estimation (local) 102559590 102561391 7504 5703 NC_000014.9 scf7180000172676 99.78 True fake: scaffold gap size wrong estimation (local) 102556117 102558950 11153 8151 NC_000014.9 scf7180000172676 99.58 True fake: scaffold gap size wrong estimation (local) 102554593 102555857 12481 11217 NC_000014.9 scf7180000172676 99.84 True fake: scaffold gap size wrong estimation (local) 102552725 102553325 14333 13733 NC_000014.9 scf7180000172676 99.67 True fake: scaffold gap size wrong estimation (local) 102551679 102552724 15561 14516 NC_000014.9 scf7180000172676 99.62 True fake: scaffold gap size wrong estimation (local) 102550091 102551197 17158 16052 NC_000014.9 scf7180000172676 100.0 True fake: scaffold gap size wrong estimation (local) 102548249 102549536 18889 17602 NC_000014.9 scf7180000172676 99.92 True fake: scaffold gap size wrong estimation (local) 102546621 102548154 20533 19011 NC_000014.9 scf7180000172676 98.17 True fake: scaffold gap size wrong estimation (local) 102541641 102546429 25512 20712 NC_000014.9 scf7180000172676 99.77 True fake: scaffold gap size wrong estimation (local) 102537213 102541445 29937 25705 NC_000014.9 scf7180000172676 99.83 True fake: scaffold gap size wrong estimation (local) 102535898 102536630 31233 30501 NC_000014.9 scf7180000172676 99.86 True fake: scaffold gap size wrong estimation (local) 102533320 102534302 33971 32989 NC_000014.9 scf7180000172676 100.0 True fake: scaffold gap size wrong estimation (local) 102532163 102532891 34897 34169 NC_000014.9 scf7180000172676 100.0 True CONTIG scf7180000172676 36373 correct 37191666 37192519 64 914 NC_000014.9 scf7180000172677 96.02 True fake: scaffold gap size wrong estimation (local) 37193665 37205139 1911 13317 NC_000014.9 scf7180000172677 99.16 True fake: scaffold gap size wrong estimation (local) 37205772 37207560 14030 15817 NC_000014.9 scf7180000172677 99.78 True fake: scaffold gap size wrong estimation (local) 37207770 37209423 15978 17643 NC_000014.9 scf7180000172677 99.76 True fake: scaffold gap size wrong estimation (local) 37209594 37218232 17721 26361 NC_000014.9 scf7180000172677 99.7 True fake: scaffold gap size wrong estimation (local) 37218385 37218925 26472 27012 NC_000014.9 scf7180000172677 99.26 True fake: scaffold gap size wrong estimation (local) 37218926 37221659 27035 29768 NC_000014.9 scf7180000172677 99.96 True fake: scaffold gap size wrong estimation (local) 37222383 37223143 30508 31268 NC_000014.9 scf7180000172677 97.24 True fake: scaffold gap size wrong estimation (local) 37223671 37224752 31786 32867 NC_000014.9 scf7180000172677 99.72 True indel: stretch of mismatches 37224942 37234946 33057 43404 NC_000014.9 scf7180000172677 95.71 True fake: scaffold gap size wrong estimation (local) 37235057 37235949 43506 44398 NC_000014.9 scf7180000172677 99.66 True indel: stretch of mismatches 37236052 37239068 44501 47506 NC_000014.9 scf7180000172677 99.27 True fake: scaffold gap size wrong estimation (local) 37239318 37267282 47754 76692 NC_000014.9 scf7180000172677 96.27 True fake: scaffold gap size wrong estimation (local) 37267445 37280712 76779 89954 NC_000014.9 scf7180000172677 99.02 True fake: scaffold gap size wrong estimation (local) 37280772 37281465 90143 90836 NC_000014.9 scf7180000172677 99.86 True fake: scaffold gap size wrong estimation (local) 37281670 37282598 90932 91852 NC_000014.9 scf7180000172677 98.92 True fake: scaffold gap size wrong estimation (local) 37283336 37284467 92663 93794 NC_000014.9 scf7180000172677 100.0 True fake: scaffold gap size wrong estimation (local) 37284607 37293405 93883 102846 NC_000014.9 scf7180000172677 95.33 True fake: scaffold gap size wrong estimation (local) 37294362 37295876 103799 105313 NC_000014.9 scf7180000172677 96.97 True fake: scaffold gap size wrong estimation (local) 37299474 37300340 112352 113218 NC_000014.9 scf7180000172677 99.65 True fake: scaffold gap size wrong estimation (local) 37302038 37322753 114477 135248 NC_000014.9 scf7180000172677 99.64 True fake: scaffold gap size wrong estimation (local) 37323379 37328036 135784 140626 NC_000014.9 scf7180000172677 96.27 True fake: scaffold gap size wrong estimation (local) 37328228 37331669 140765 144210 NC_000014.9 scf7180000172677 99.59 True fake: scaffold gap size wrong estimation (local) 37332040 37337336 144531 149736 NC_000014.9 scf7180000172677 97.22 True fake: scaffold gap size wrong estimation (local) 37338505 37342509 150904 154987 NC_000014.9 scf7180000172677 98.33 True fake: scaffold gap size wrong estimation (local) 37342643 37348982 155122 161421 NC_000014.9 scf7180000172677 99.06 True fake: scaffold gap size wrong estimation (local) 37349137 37350966 161551 163380 NC_000014.9 scf7180000172677 99.78 True CONTIG scf7180000172677 163382 correct 87694070 87703394 1 9801 NC_000014.9 scf7180000172678 95.43 True fake: scaffold gap size wrong estimation (local) 87703608 87729593 9964 35990 NC_000014.9 scf7180000172678 99.73 True fake: scaffold gap size wrong estimation (local) 87729689 87740760 36079 47237 NC_000014.9 scf7180000172678 97.65 True fake: scaffold gap size wrong estimation (local) 87740967 87752985 47352 59377 NC_000014.9 scf7180000172678 99.96 True fake: scaffold gap size wrong estimation (local) 87753267 87768047 59642 74361 NC_000014.9 scf7180000172678 99.54 True fake: scaffold gap size wrong estimation (local) 87768269 87769214 74495 75440 NC_000014.9 scf7180000172678 100.0 True fake: scaffold gap size wrong estimation (local) 87769451 87775854 75628 81922 NC_000014.9 scf7180000172678 98.25 True fake: scaffold gap size wrong estimation (local) 87781101 87819462 87980 126349 NC_000014.9 scf7180000172678 98.28 True fake: scaffold gap size wrong estimation (local) 87821137 87822260 127674 128797 NC_000014.9 scf7180000172678 99.82 True CONTIG scf7180000172678 128797 correct 21282884 21283482 599 1 NC_000014.9 scf7180000172679 99.67 True fake: scaffold gap size wrong estimation (local) 21280421 21281036 3111 2496 NC_000014.9 scf7180000172679 95.62 True fake: scaffold gap size wrong estimation (local) 21278417 21278934 5578 5061 NC_000014.9 scf7180000172679 100.0 True fake: scaffold gap size wrong estimation (local) 21275288 21276146 8502 7589 NC_000014.9 scf7180000172679 97.37 True fake: scaffold gap size wrong estimation (local) 21273443 21274144 9252 8551 NC_000014.9 scf7180000172679 100.0 True local misassembly 21274213 21275049 10109 9273 NC_000014.9 scf7180000172679 100.0 True fake: scaffold gap size wrong estimation (local) 21270541 21272942 13482 11164 NC_000014.9 scf7180000172679 95.86 True fake: scaffold gap size wrong estimation (local) 21267124 21270409 17030 13745 NC_000014.9 scf7180000172679 100.0 True fake: scaffold gap size wrong estimation (local) 21266357 21266901 17601 17057 NC_000014.9 scf7180000172679 100.0 True fake: scaffold gap size wrong estimation (local) 21260397 21266203 23449 17762 NC_000014.9 scf7180000172679 97.19 True fake: scaffold gap size wrong estimation (local) 21258386 21259864 25838 24360 NC_000014.9 scf7180000172679 100.0 True fake: scaffold gap size wrong estimation (local) 21256402 21258204 27922 26120 NC_000014.9 scf7180000172679 99.94 True CONTIG scf7180000172679 30512 correct 102022533 102023607 1075 1 NC_000014.9 scf7180000172680 99.81 True fake: scaffold gap size wrong estimation (local) 102017762 102022063 5689 1499 NC_000014.9 scf7180000172680 97.04 True fake: scaffold gap size wrong estimation (local) 102013095 102017722 10402 5821 NC_000014.9 scf7180000172680 98.96 True fake: scaffold gap size wrong estimation (local) 102006361 102013122 17084 10490 NC_000014.9 scf7180000172680 97.46 True fake: scaffold gap size wrong estimation (local) 102004247 102006324 19400 17323 NC_000014.9 scf7180000172680 100.0 True fake: scaffold gap size wrong estimation (local) 102002379 102003280 21185 20284 NC_000014.9 scf7180000172680 100.0 True CONTIG scf7180000172680 21607 correct 66586640 66588533 3835 1942 NC_000014.9 scf7180000172681 99.89 True fake: scaffold gap size wrong estimation (local) 66573660 66582471 16806 7985 NC_000014.9 scf7180000172681 99.98 True fake: scaffold gap size wrong estimation (local) 66570515 66573468 19941 16988 NC_000014.9 scf7180000172681 100.0 True fake: scaffold gap size wrong estimation (local) 66569639 66570305 20762 20096 NC_000014.9 scf7180000172681 100.0 True fake: scaffold gap size wrong estimation (local) 66560724 66569445 29506 20933 NC_000014.9 scf7180000172681 98.16 True fake: scaffold gap size wrong estimation (local) 66551128 66558804 38559 31012 NC_000014.9 scf7180000172681 98.18 True CONTIG scf7180000172681 40296 correct 97221546 97223332 5 1791 NC_000014.9 scf7180000172682 100.0 True fake: scaffold gap size wrong estimation (local) 97223596 97233067 2001 11404 NC_000014.9 scf7180000172682 99.17 True fake: scaffold gap size wrong estimation (local) 97233245 97248735 11556 26997 NC_000014.9 scf7180000172682 99.57 True fake: scaffold gap size wrong estimation (local) 97250101 97259685 28266 37846 NC_000014.9 scf7180000172682 99.9 True fake: scaffold gap size wrong estimation (local) 97260172 97261140 38348 39316 NC_000014.9 scf7180000172682 97.42 True fake: scaffold gap size wrong estimation (local) 97261439 97263486 39608 41655 NC_000014.9 scf7180000172682 99.95 True fake: scaffold gap size wrong estimation (local) 97263960 97264469 41967 42476 NC_000014.9 scf7180000172682 97.65 True fake: scaffold gap size wrong estimation (local) 97264529 97280435 42671 58581 NC_000014.9 scf7180000172682 99.92 True fake: scaffold gap size wrong estimation (local) 97280587 97321258 58750 99479 NC_000014.9 scf7180000172682 99.75 True fake: scaffold gap size wrong estimation (local) 97321352 97323100 99560 101308 NC_000014.9 scf7180000172682 99.89 True fake: scaffold gap size wrong estimation (local) 97323362 97326922 101551 105092 NC_000014.9 scf7180000172682 99.41 True fake: scaffold gap size wrong estimation (local) 97327107 97333422 105209 111493 NC_000014.9 scf7180000172682 99.49 True fake: scaffold gap size wrong estimation (local) 97333683 97355867 111619 133808 NC_000014.9 scf7180000172682 99.92 True fake: scaffold gap size wrong estimation (local) 97356138 97368530 133992 146368 NC_000014.9 scf7180000172682 99.67 True fake: scaffold gap size wrong estimation (local) 97368668 97384429 146442 162138 NC_000014.9 scf7180000172682 99.4 True fake: scaffold gap size wrong estimation (local) 97384480 97394241 162345 172062 NC_000014.9 scf7180000172682 99.42 True fake: scaffold gap size wrong estimation (local) 97394609 97418749 172419 196702 NC_000014.9 scf7180000172682 99.54 True fake: scaffold gap size wrong estimation (local) 97419749 97423573 197602 201426 NC_000014.9 scf7180000172682 100.0 True fake: scaffold gap size wrong estimation (local) 97423750 97431678 201551 209468 NC_000014.9 scf7180000172682 98.81 True fake: scaffold gap size wrong estimation (local) 97432394 97434072 210314 211992 NC_000014.9 scf7180000172682 99.82 True fake: scaffold gap size wrong estimation (local) 97434233 97439060 212133 216979 NC_000014.9 scf7180000172682 99.88 True fake: scaffold gap size wrong estimation (local) 97439210 97461007 217085 238866 NC_000014.9 scf7180000172682 99.77 True fake: scaffold gap size wrong estimation (local) 97461252 97472892 239090 250738 NC_000014.9 scf7180000172682 99.77 True fake: scaffold gap size wrong estimation (local) 97473066 97505614 250885 283470 NC_000014.9 scf7180000172682 99.82 True fake: scaffold gap size wrong estimation (local) 97505920 97507342 284001 285423 NC_000014.9 scf7180000172682 99.93 True fake: scaffold gap size wrong estimation (local) 97508785 97531113 287172 309469 NC_000014.9 scf7180000172682 99.67 True fake: scaffold gap size wrong estimation (local) 97531289 97548389 309602 326618 NC_000014.9 scf7180000172682 99.49 True fake: scaffold gap size wrong estimation (local) 97547053 97551284 327006 331237 NC_000014.9 scf7180000172682 99.91 True fake: scaffold gap size wrong estimation (local) 97551434 97614637 331359 394616 NC_000014.9 scf7180000172682 99.91 True fake: scaffold gap size wrong estimation (local) 97614749 97628622 395125 409131 NC_000014.9 scf7180000172682 99.34 True fake: scaffold gap size wrong estimation (local) 97628864 97644966 409357 425658 NC_000014.9 scf7180000172682 98.75 True fake: scaffold gap size wrong estimation (local) 97645149 97659542 425759 440178 NC_000014.9 scf7180000172682 99.68 True fake: scaffold gap size wrong estimation (local) 97659733 97665969 440356 446594 NC_000014.9 scf7180000172682 99.78 True CONTIG scf7180000172682 446594 correct 18531581 18532184 604 1 NC_000014.9 scf7180000172683 100.0 True fake: scaffold gap size wrong estimation (local) 18528387 18529145 3317 2559 NC_000014.9 scf7180000172683 99.47 True CONTIG scf7180000172683 3317 correct CONTIG scf7180000172684 3289 unaligned 18516477 18517411 2371 3303 NC_000014.9 scf7180000172685 99.14 True fake: scaffold gap size wrong estimation (local) 18519371 18520111 5093 5833 NC_000014.9 scf7180000172685 99.87 True CONTIG scf7180000172685 5833 correct 67284582 67285414 2155 1323 NC_000014.9 scf7180000172686 99.4 True fake: scaffold gap size wrong estimation (local) 67278335 67284386 8442 2369 NC_000014.9 scf7180000172686 98.9 True fake: scaffold gap size wrong estimation (local) 67275837 67278064 10876 8649 NC_000014.9 scf7180000172686 100.0 True fake: scaffold gap size wrong estimation (local) 67267398 67272751 19175 13831 NC_000014.9 scf7180000172686 99.25 True fake: scaffold gap size wrong estimation (local) 67265829 67266459 20689 20059 NC_000014.9 scf7180000172686 95.88 True fake: scaffold gap size wrong estimation (local) 67259862 67265828 26685 20719 NC_000014.9 scf7180000172686 99.65 True fake: scaffold gap size wrong estimation (local) 67255902 67258983 30527 27419 NC_000014.9 scf7180000172686 98.36 True fake: scaffold gap size wrong estimation (local) 67255124 67255841 31306 30589 NC_000014.9 scf7180000172686 100.0 True fake: scaffold gap size wrong estimation (local) 67243771 67254896 42562 31527 NC_000014.9 scf7180000172686 98.98 True fake: scaffold gap size wrong estimation (local) 67237038 67243334 49225 42934 NC_000014.9 scf7180000172686 99.44 True fake: scaffold gap size wrong estimation (local) 67235702 67236832 50743 49613 NC_000014.9 scf7180000172686 100.0 True fake: scaffold gap size wrong estimation (local) 67234791 67235470 51546 50867 NC_000014.9 scf7180000172686 99.85 True CONTIG scf7180000172686 51546 correct 49994097 49994704 608 1 NC_000014.9 scf7180000172687 100.0 True fake: scaffold gap size wrong estimation (local) 49989910 49993906 4790 794 NC_000014.9 scf7180000172687 99.92 True fake: scaffold gap size wrong estimation (local) 49987660 49989348 6901 5213 NC_000014.9 scf7180000172687 99.82 True local misassembly 49985452 49987659 9470 7263 NC_000014.9 scf7180000172687 99.0 True fake: scaffold gap size wrong estimation (local) 49984307 49985255 10623 9675 NC_000014.9 scf7180000172687 100.0 True fake: scaffold gap size wrong estimation (local) 49974989 49983112 20013 11890 NC_000014.9 scf7180000172687 99.94 True fake: scaffold gap size wrong estimation (local) 49969834 49973778 25479 21535 NC_000014.9 scf7180000172687 99.67 True fake: scaffold gap size wrong estimation (local) 49968109 49969155 27614 26568 NC_000014.9 scf7180000172687 100.0 True fake: scaffold gap size wrong estimation (local) 49967055 49968108 28689 27636 NC_000014.9 scf7180000172687 95.35 True indel: indel (> 5bp) 49965523 49966996 30163 28690 NC_000014.9 scf7180000172687 98.64 True indel: indel (> 5bp) 49963766 49965489 31887 30164 NC_000014.9 scf7180000172687 99.94 True fake: scaffold gap size wrong estimation (local) 49959817 49963625 35783 31971 NC_000014.9 scf7180000172687 99.87 True indel: indel (> 5bp) 49958519 49959749 37166 35866 NC_000014.9 scf7180000172687 100.0 True fake: scaffold gap size wrong estimation (local) 49956019 49958285 39614 37382 NC_000014.9 scf7180000172687 98.4 True fake: scaffold gap size wrong estimation (local) 49950054 49955624 45514 39982 NC_000014.9 scf7180000172687 99.3 True fake: scaffold gap size wrong estimation (local) 49945354 49949254 50173 46275 NC_000014.9 scf7180000172687 99.92 True fake: scaffold gap size wrong estimation (local) 49943395 49944884 52060 50588 NC_000014.9 scf7180000172687 98.84 True CONTIG scf7180000172687 52282 correct 80019307 80028865 9642 93 NC_000014.9 scf7180000172688 99.56 True fake: scaffold gap size wrong estimation (local) 80011525 80018888 17353 9990 NC_000014.9 scf7180000172688 99.88 True fake: scaffold gap size wrong estimation (local) 79999349 80010485 29445 18309 NC_000014.9 scf7180000172688 99.87 True fake: scaffold gap size wrong estimation (local) 79974714 79999057 54050 29709 NC_000014.9 scf7180000172688 99.78 True fake: not a misassembly (possible transposable element) 33273631 33274145 54071 54585 NC_000014.9 scf7180000172688 99.81 True fake: not a misassembly (possible transposable element) 79958917 79974786 70527 54586 NC_000014.9 scf7180000172688 99.18 True fake: scaffold gap size wrong estimation (local) 79957111 79957790 72452 71773 NC_000014.9 scf7180000172688 99.12 True fake: scaffold gap size wrong estimation (local) 79937048 79956085 92391 73015 NC_000014.9 scf7180000172688 99.53 True fake: scaffold gap size wrong estimation (local) 79918415 79934308 110435 94743 NC_000014.9 scf7180000172688 98.64 True fake: scaffold gap size wrong estimation (local) 79906605 79918159 122154 110600 NC_000014.9 scf7180000172688 99.99 True fake: scaffold gap size wrong estimation (local) 79902928 79906061 125700 122567 NC_000014.9 scf7180000172688 100.0 True fake: scaffold gap size wrong estimation (local) 79898553 79902745 130050 125893 NC_000014.9 scf7180000172688 99.1 True fake: scaffold gap size wrong estimation (local) 79865023 79897554 163362 130963 NC_000014.9 scf7180000172688 98.99 True fake: scaffold gap size wrong estimation (local) 79857472 79864727 170876 163596 NC_000014.9 scf7180000172688 99.96 True fake: scaffold gap size wrong estimation (local) 79828504 79857273 199542 170977 NC_000014.9 scf7180000172688 98.92 True fake: scaffold gap size wrong estimation (local) 79818332 79828365 209720 199680 NC_000014.9 scf7180000172688 99.13 True fake: scaffold gap size wrong estimation (local) 79811813 79818050 216232 210012 NC_000014.9 scf7180000172688 99.68 True fake: scaffold gap size wrong estimation (local) 79807071 79811588 220855 216390 NC_000014.9 scf7180000172688 97.17 True fake: scaffold gap size wrong estimation (local) 79794359 79806945 233608 221026 NC_000014.9 scf7180000172688 99.93 True local misassembly 79793329 79794219 234785 233895 NC_000014.9 scf7180000172688 99.66 True fake: scaffold gap size wrong estimation (local) 79790721 79793168 237286 234891 NC_000014.9 scf7180000172688 97.82 True fake: scaffold gap size wrong estimation (local) 79780589 79790625 247503 237458 NC_000014.9 scf7180000172688 99.95 True fake: scaffold gap size wrong estimation (local) 79779394 79780346 248631 247679 NC_000014.9 scf7180000172688 99.9 True indel: indel (<= 5bp) 79773594 79779240 254549 248786 NC_000014.9 scf7180000172688 99.46 True fake: scaffold gap size wrong estimation (local) 79763436 79767853 265836 261417 NC_000014.9 scf7180000172688 99.75 True fake: scaffold gap size wrong estimation (local) 79761708 79762469 267730 266969 NC_000014.9 scf7180000172688 100.0 True fake: scaffold gap size wrong estimation (local) 79754561 79761584 274925 267903 NC_000014.9 scf7180000172688 99.9 True fake: scaffold gap size wrong estimation (local) 79741734 79751075 287574 278087 NC_000014.9 scf7180000172688 98.37 True fake: scaffold gap size wrong estimation (local) 79739675 79741529 289626 287810 NC_000014.9 scf7180000172688 97.9 True fake: scaffold gap size wrong estimation (local) 79738747 79739423 290593 289917 NC_000014.9 scf7180000172688 99.7 True fake: scaffold gap size wrong estimation (local) 79715204 79738553 314016 290707 NC_000014.9 scf7180000172688 99.48 True fake: scaffold gap size wrong estimation (local) 79662779 79715045 366432 314134 NC_000014.9 scf7180000172688 99.94 True fake: scaffold gap size wrong estimation (local) 79637993 79662913 391759 366807 NC_000014.9 scf7180000172688 99.92 True fake: scaffold gap size wrong estimation (local) 79628727 79637732 400869 391984 NC_000014.9 scf7180000172688 98.62 True CONTIG scf7180000172688 400869 correct 101896272 101897683 1429 1 NC_000014.9 scf7180000172689 100.0 True fake: scaffold gap size wrong estimation (local) 101893725 101896132 4081 1674 NC_000014.9 scf7180000172689 99.92 True fake: scaffold gap size wrong estimation (local) 101890980 101893547 6834 4267 NC_000014.9 scf7180000172689 100.0 True fake: scaffold gap size wrong estimation (local) 101886270 101890764 11535 7018 NC_000014.9 scf7180000172689 98.89 True fake: scaffold gap size wrong estimation (local) 101867742 101886027 29959 11811 NC_000014.9 scf7180000172689 98.81 True fake: scaffold gap size wrong estimation (local) 101852653 101865962 45017 31633 NC_000014.9 scf7180000172689 98.35 True fake: scaffold gap size wrong estimation (local) 101848523 101852456 49220 45255 NC_000014.9 scf7180000172689 99.49 True fake: scaffold gap size wrong estimation (local) 101839267 101848289 58552 49686 NC_000014.9 scf7180000172689 97.65 True fake: scaffold gap size wrong estimation (local) 101834053 101838796 63650 58913 NC_000014.9 scf7180000172689 99.64 True fake: scaffold gap size wrong estimation (local) 101829043 101833850 68654 63847 NC_000014.9 scf7180000172689 100.0 True fake: scaffold gap size wrong estimation (local) 101818614 101828688 78863 68794 NC_000014.9 scf7180000172689 99.69 True CONTIG scf7180000172689 78982 correct 58929121 58936135 1647 8677 NC_000014.9 scf7180000172690 99.74 True indel: indel (<= 5bp) 58936292 58959763 8833 32252 NC_000014.9 scf7180000172690 99.51 True fake: scaffold gap size wrong estimation (local) 58960032 58961985 32424 34377 NC_000014.9 scf7180000172690 100.0 True fake: scaffold gap size wrong estimation (local) 58962945 59002276 35175 74341 NC_000014.9 scf7180000172690 98.61 True fake: scaffold gap size wrong estimation (local) 59002542 59004759 74614 76830 NC_000014.9 scf7180000172690 99.77 True fake: scaffold gap size wrong estimation (local) 59004860 59041915 76974 113854 NC_000014.9 scf7180000172690 99.25 True fake: scaffold gap size wrong estimation (local) 59042778 59052420 114656 124293 NC_000014.9 scf7180000172690 99.87 True fake: scaffold gap size wrong estimation (local) 59052603 59058127 124468 129992 NC_000014.9 scf7180000172690 99.84 True fake: scaffold gap size wrong estimation (local) 59059731 59062945 131454 134668 NC_000014.9 scf7180000172690 99.94 True fake: scaffold gap size wrong estimation (local) 59063103 59074641 134743 146290 NC_000014.9 scf7180000172690 99.86 True fake: scaffold gap size wrong estimation (local) 59074826 59080633 146481 152082 NC_000014.9 scf7180000172690 96.34 True fake: scaffold gap size wrong estimation (local) 59080854 59096803 152248 168327 NC_000014.9 scf7180000172690 98.44 True fake: scaffold gap size wrong estimation (local) 59097009 59111056 168517 182558 NC_000014.9 scf7180000172690 99.83 True fake: scaffold gap size wrong estimation (local) 59113319 59128141 184544 199329 NC_000014.9 scf7180000172690 99.36 True fake: scaffold gap size wrong estimation (local) 59128451 59129943 199559 201051 NC_000014.9 scf7180000172690 99.93 True fake: scaffold gap size wrong estimation (local) 59130203 59136659 201278 207740 NC_000014.9 scf7180000172690 99.85 True fake: scaffold gap size wrong estimation (local) 59136805 59137908 207896 208999 NC_000014.9 scf7180000172690 99.91 True fake: scaffold gap size wrong estimation (local) 59138684 59141056 209740 212112 NC_000014.9 scf7180000172690 99.96 True fake: scaffold gap size wrong estimation (local) 59141590 59152772 212538 223666 NC_000014.9 scf7180000172690 99.4 True fake: scaffold gap size wrong estimation (local) 59152962 59163984 223829 234867 NC_000014.9 scf7180000172690 99.56 True fake: scaffold gap size wrong estimation (local) 59164079 59165207 234977 236125 NC_000014.9 scf7180000172690 100.0 True fake: scaffold gap size wrong estimation (local) 59165367 59166144 236288 237065 NC_000014.9 scf7180000172690 99.87 True fake: scaffold gap size wrong estimation (local) 59166728 59167991 237519 238782 NC_000014.9 scf7180000172690 98.42 True local misassembly 59168100 59168945 238783 239628 NC_000014.9 scf7180000172690 100.0 True fake: scaffold gap size wrong estimation (local) 59168946 59169998 239748 240800 NC_000014.9 scf7180000172690 98.96 True fake: scaffold gap size wrong estimation (local) 59171237 59173483 241971 244235 NC_000014.9 scf7180000172690 100.0 True fake: scaffold gap size wrong estimation (local) 59173601 59180899 244322 251682 NC_000014.9 scf7180000172690 99.58 True fake: not a misassembly (possible transposable element) 57150558 57151616 252761 251703 NC_000014.9 scf7180000172690 100.0 True fake: not a misassembly (possible transposable element) 59181302 59184680 252762 256140 NC_000014.9 scf7180000172690 100.0 True CONTIG scf7180000172690 256140 correct 39000916 39006298 5591 212 NC_000014.9 scf7180000172691 99.89 True fake: scaffold gap size wrong estimation (local) 38998009 39000742 8601 5760 NC_000014.9 scf7180000172691 96.74 True fake: scaffold gap size wrong estimation (local) 38995307 38997727 11296 8876 NC_000014.9 scf7180000172691 99.05 True indel: indel (> 5bp) 38993902 38995300 12695 11297 NC_000014.9 scf7180000172691 100.0 True indel: indel (<= 5bp) 38993400 38993901 13199 12698 NC_000014.9 scf7180000172691 100.0 True fake: scaffold gap size wrong estimation (local) 38992222 38993399 14862 13685 NC_000014.9 scf7180000172691 99.83 True indel: indel (> 5bp) 38989264 38992190 17789 14863 NC_000014.9 scf7180000172691 99.9 True fake: scaffold gap size wrong estimation (local) 38987594 38989029 19433 17998 NC_000014.9 scf7180000172691 100.0 True fake: scaffold gap size wrong estimation (local) 38986478 38987471 20629 19636 NC_000014.9 scf7180000172691 99.9 True fake: scaffold gap size wrong estimation (local) 38980492 38985183 26459 21758 NC_000014.9 scf7180000172691 99.55 True indel: indel (> 5bp) 38979778 38980417 27141 26502 NC_000014.9 scf7180000172691 99.53 True fake: scaffold gap size wrong estimation (local) 38972680 38975505 34015 31190 NC_000014.9 scf7180000172691 99.96 True fake: scaffold gap size wrong estimation (local) 38969051 38972471 37528 34200 NC_000014.9 scf7180000172691 96.97 True fake: scaffold gap size wrong estimation (local) 38965642 38966871 40844 39616 NC_000014.9 scf7180000172691 99.84 True fake: scaffold gap size wrong estimation (local) 38949514 38965460 56932 41029 NC_000014.9 scf7180000172691 99.65 True fake: scaffold gap size wrong estimation (local) 38947252 38949247 59149 57170 NC_000014.9 scf7180000172691 99.15 True fake: scaffold gap size wrong estimation (local) 38945482 38947091 60833 59223 NC_000014.9 scf7180000172691 99.63 True fake: scaffold gap size wrong estimation (local) 38942718 38945303 63592 61007 NC_000014.9 scf7180000172691 99.96 True fake: scaffold gap size wrong estimation (local) 38940422 38942506 65963 63727 NC_000014.9 scf7180000172691 99.95 True fake: scaffold gap size wrong estimation (local) 38939322 38940044 66910 66188 NC_000014.9 scf7180000172691 99.86 True fake: scaffold gap size wrong estimation (local) 38934915 38939121 71308 67085 NC_000014.9 scf7180000172691 98.87 True fake: scaffold gap size wrong estimation (local) 38927801 38934400 78371 71772 NC_000014.9 scf7180000172691 99.92 True fake: scaffold gap size wrong estimation (local) 38896908 38922363 109846 84428 NC_000014.9 scf7180000172691 99.79 True fake: scaffold gap size wrong estimation (local) 38877350 38896736 129298 109939 NC_000014.9 scf7180000172691 99.69 True fake: scaffold gap size wrong estimation (local) 38860114 38877057 146461 129516 NC_000014.9 scf7180000172691 99.95 True fake: scaffold gap size wrong estimation (local) 38858375 38859836 148243 146782 NC_000014.9 scf7180000172691 100.0 True relocation, inconsistency = -19019158 57874532 57877532 151244 148244 NC_000014.9 scf7180000172691 100.0 True CONTIG scf7180000172691 151244 misassembled CONTIG scf7180000172692 6184 unaligned 103910839 103913104 11 2276 NC_000014.9 scf7180000172693 99.96 True fake: scaffold gap size wrong estimation (local) 103913274 103915397 2510 4630 NC_000014.9 scf7180000172693 99.71 True fake: scaffold gap size wrong estimation (local) 103915735 103918401 4935 7601 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 103919386 103919950 8676 9240 NC_000014.9 scf7180000172693 98.41 True fake: scaffold gap size wrong estimation (local) 103920694 103922142 9860 11308 NC_000014.9 scf7180000172693 99.93 True fake: scaffold gap size wrong estimation (local) 103922822 103923341 11921 12440 NC_000014.9 scf7180000172693 96.54 True indel: indel (> 5bp) 103923342 103924453 12515 13626 NC_000014.9 scf7180000172693 99.91 True indel: indel (<= 5bp) 103924456 103925018 13627 14189 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 103925898 103926914 14210 15208 NC_000014.9 scf7180000172693 97.89 True fake: scaffold gap size wrong estimation (local) 103928943 103929573 15455 16085 NC_000014.9 scf7180000172693 100.0 True local misassembly 103925220 103925779 16106 16665 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 103926833 103928936 16865 18968 NC_000014.9 scf7180000172693 99.67 True fake: scaffold gap size wrong estimation (local) 103929794 103932468 18989 21693 NC_000014.9 scf7180000172693 99.59 True fake: scaffold gap size wrong estimation (local) 103932612 103933547 21925 22860 NC_000014.9 scf7180000172693 100.0 True local misassembly 103933653 103934530 22861 23738 NC_000014.9 scf7180000172693 97.72 True fake: scaffold gap size wrong estimation (local) 103934699 103938380 23944 27606 NC_000014.9 scf7180000172693 99.29 True fake: scaffold gap size wrong estimation (local) 103938710 103944602 27870 33639 NC_000014.9 scf7180000172693 97.85 True fake: scaffold gap size wrong estimation (local) 103944766 103949761 33811 38766 NC_000014.9 scf7180000172693 97.25 True fake: scaffold gap size wrong estimation (local) 103950195 103951795 39188 40788 NC_000014.9 scf7180000172693 99.88 True fake: scaffold gap size wrong estimation (local) 103953000 103954671 41944 43615 NC_000014.9 scf7180000172693 99.94 True local misassembly 103954970 103956025 43616 44671 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 103956291 103961379 44950 50041 NC_000014.9 scf7180000172693 99.78 True fake: scaffold gap size wrong estimation (local) 103961577 103966080 50145 54653 NC_000014.9 scf7180000172693 99.8 True fake: scaffold gap size wrong estimation (local) 103966282 103968524 54803 56994 NC_000014.9 scf7180000172693 97.71 True fake: scaffold gap size wrong estimation (local) 103969175 103971001 57694 59520 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 103971397 103971993 60105 60701 NC_000014.9 scf7180000172693 99.66 True local misassembly 103972246 103973941 60702 62397 NC_000014.9 scf7180000172693 98.47 True fake: scaffold gap size wrong estimation (local) 103973942 103976311 62433 64802 NC_000014.9 scf7180000172693 99.54 True fake: scaffold gap size wrong estimation (local) 103976542 103977249 64943 65650 NC_000014.9 scf7180000172693 99.86 True fake: scaffold gap size wrong estimation (local) 103977638 103982648 66005 71015 NC_000014.9 scf7180000172693 99.88 True fake: scaffold gap size wrong estimation (local) 103983734 103985165 72532 73963 NC_000014.9 scf7180000172693 99.86 True fake: scaffold gap size wrong estimation (local) 103985444 103986949 74341 75846 NC_000014.9 scf7180000172693 99.87 True fake: scaffold gap size wrong estimation (local) 103988708 103992678 77424 81394 NC_000014.9 scf7180000172693 99.72 True fake: scaffold gap size wrong estimation (local) 103992944 103998805 81652 87527 NC_000014.9 scf7180000172693 99.66 True fake: scaffold gap size wrong estimation (local) 103999054 104000558 87694 89185 NC_000014.9 scf7180000172693 99.0 True fake: scaffold gap size wrong estimation (local) 104000708 104001798 89325 90415 NC_000014.9 scf7180000172693 99.73 True fake: scaffold gap size wrong estimation (local) 104001799 104002314 90667 91182 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 104002912 104007827 91593 96517 NC_000014.9 scf7180000172693 99.63 True fake: scaffold gap size wrong estimation (local) 104008015 104009961 96731 98677 NC_000014.9 scf7180000172693 99.9 True fake: scaffold gap size wrong estimation (local) 104010260 104014015 98935 102710 NC_000014.9 scf7180000172693 99.73 True fake: scaffold gap size wrong estimation (local) 104014274 104030762 102940 119622 NC_000014.9 scf7180000172693 97.29 True fake: scaffold gap size wrong estimation (local) 104030946 104032242 119676 121033 NC_000014.9 scf7180000172693 99.84 True fake: scaffold gap size wrong estimation (local) 104032476 104034188 121268 122980 NC_000014.9 scf7180000172693 99.77 True fake: scaffold gap size wrong estimation (local) 104034422 104046686 123121 135163 NC_000014.9 scf7180000172693 97.96 True fake: scaffold gap size wrong estimation (local) 104046920 104058595 135340 147040 NC_000014.9 scf7180000172693 99.83 True fake: scaffold gap size wrong estimation (local) 104058859 104070825 147234 159219 NC_000014.9 scf7180000172693 96.74 True fake: scaffold gap size wrong estimation (local) 104072629 104073410 160926 161707 NC_000014.9 scf7180000172693 99.87 True fake: scaffold gap size wrong estimation (local) 104075347 104076363 163530 164535 NC_000014.9 scf7180000172693 98.72 True fake: scaffold gap size wrong estimation (local) 104077158 104079678 165489 167893 NC_000014.9 scf7180000172693 95.36 True fake: scaffold gap size wrong estimation (local) 104079942 104089052 168187 177415 NC_000014.9 scf7180000172693 99.76 True fake: scaffold gap size wrong estimation (local) 104089291 104122241 177436 210444 NC_000014.9 scf7180000172693 99.28 True fake: scaffold gap size wrong estimation (local) 104122652 104123517 210871 211736 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 104123778 104124843 211958 213023 NC_000014.9 scf7180000172693 100.0 True fake: scaffold gap size wrong estimation (local) 104126512 104127636 214617 215741 NC_000014.9 scf7180000172693 99.64 True CONTIG scf7180000172693 215804 correct 85318846 85324088 5265 23 NC_000014.9 scf7180000172694 99.96 True fake: scaffold gap size wrong estimation (local) 85298628 85318577 25404 5484 NC_000014.9 scf7180000172694 99.8 True fake: scaffold gap size wrong estimation (local) 85296212 85298379 27849 25682 NC_000014.9 scf7180000172694 99.86 True fake: scaffold gap size wrong estimation (local) 85288829 85296081 35084 28021 NC_000014.9 scf7180000172694 97.12 True fake: scaffold gap size wrong estimation (local) 85275126 85288376 48914 35665 NC_000014.9 scf7180000172694 99.85 True fake: scaffold gap size wrong estimation (local) 85264954 85274883 59019 49096 NC_000014.9 scf7180000172694 99.65 True fake: scaffold gap size wrong estimation (local) 85262893 85264744 61021 59170 NC_000014.9 scf7180000172694 99.68 True fake: scaffold gap size wrong estimation (local) 85259920 85262105 64114 61931 NC_000014.9 scf7180000172694 99.41 True fake: scaffold gap size wrong estimation (local) 85250123 85259731 73851 64242 NC_000014.9 scf7180000172694 99.81 True fake: scaffold gap size wrong estimation (local) 85235812 85249932 88089 73992 NC_000014.9 scf7180000172694 99.57 True fake: scaffold gap size wrong estimation (local) 85230589 85235589 93264 88264 NC_000014.9 scf7180000172694 99.7 True fake: scaffold gap size wrong estimation (local) 85225637 85229952 98133 93889 NC_000014.9 scf7180000172694 98.18 True fake: scaffold gap size wrong estimation (local) 85223241 85225376 100563 98409 NC_000014.9 scf7180000172694 99.77 True fake: scaffold gap size wrong estimation (local) 85220463 85223136 103324 100652 NC_000014.9 scf7180000172694 99.93 True fake: scaffold gap size wrong estimation (local) 85213198 85220187 110562 103572 NC_000014.9 scf7180000172694 99.89 True fake: scaffold gap size wrong estimation (local) 85210701 85211204 112882 112379 NC_000014.9 scf7180000172694 100.0 True local misassembly 85208347 85210524 115060 112883 NC_000014.9 scf7180000172694 99.82 True fake: scaffold gap size wrong estimation (local) 85205707 85207291 117648 116064 NC_000014.9 scf7180000172694 99.94 True fake: scaffold gap size wrong estimation (local) 85203799 85205546 119471 117724 NC_000014.9 scf7180000172694 99.89 True fake: scaffold gap size wrong estimation (local) 85192697 85203655 130494 119571 NC_000014.9 scf7180000172694 99.55 True fake: scaffold gap size wrong estimation (local) 85185051 85192487 138024 130666 NC_000014.9 scf7180000172694 98.38 True fake: scaffold gap size wrong estimation (local) 85155502 85184829 167562 138222 NC_000014.9 scf7180000172694 99.85 True fake: scaffold gap size wrong estimation (local) 85142580 85155278 180919 167749 NC_000014.9 scf7180000172694 96.65 True fake: scaffold gap size wrong estimation (local) 85139019 85142441 184451 181031 NC_000014.9 scf7180000172694 99.77 True fake: scaffold gap size wrong estimation (local) 85137868 85138872 185538 184512 NC_000014.9 scf7180000172694 99.8 True fake: scaffold gap size wrong estimation (local) 85112076 85137705 211279 185783 NC_000014.9 scf7180000172694 99.26 True fake: scaffold gap size wrong estimation (local) 85101776 85111840 221533 211453 NC_000014.9 scf7180000172694 99.77 True fake: scaffold gap size wrong estimation (local) 85084968 85101586 238275 221644 NC_000014.9 scf7180000172694 99.89 True fake: scaffold gap size wrong estimation (local) 85078334 85084773 244940 238498 NC_000014.9 scf7180000172694 99.8 True indel: indel (> 5bp) 85077118 85078179 246148 245087 NC_000014.9 scf7180000172694 100.0 True fake: scaffold gap size wrong estimation (local) 85055314 85076872 267925 246349 NC_000014.9 scf7180000172694 99.89 True fake: scaffold gap size wrong estimation (local) 85046625 85055108 276581 268098 NC_000014.9 scf7180000172694 99.89 True fake: scaffold gap size wrong estimation (local) 85038538 85046505 284692 276715 NC_000014.9 scf7180000172694 99.96 True fake: scaffold gap size wrong estimation (local) 85034650 85038426 288627 284857 NC_000014.9 scf7180000172694 99.74 True fake: scaffold gap size wrong estimation (local) 85023798 85034446 299361 288774 NC_000014.9 scf7180000172694 99.27 True fake: scaffold gap size wrong estimation (local) 85023053 85023598 300094 299549 NC_000014.9 scf7180000172694 99.08 True CONTIG scf7180000172694 302654 correct 24542799 24544087 1305 17 NC_000014.9 scf7180000172695 99.92 True fake: scaffold gap size wrong estimation (local) 24532093 24542655 12160 1411 NC_000014.9 scf7180000172695 98.29 True fake: scaffold gap size wrong estimation (local) 24531008 24531566 13275 12717 NC_000014.9 scf7180000172695 98.03 True fake: scaffold gap size wrong estimation (local) 24521074 24526186 23175 18064 NC_000014.9 scf7180000172695 99.78 True fake: scaffold gap size wrong estimation (local) 24497908 24519442 46047 24570 NC_000014.9 scf7180000172695 99.0 True fake: scaffold gap size wrong estimation (local) 24485365 24486106 58654 57913 NC_000014.9 scf7180000172695 99.6 True fake: scaffold gap size wrong estimation (local) 24480349 24485171 63745 58923 NC_000014.9 scf7180000172695 99.34 True fake: scaffold gap size wrong estimation (local) 24479516 24480026 64707 64197 NC_000014.9 scf7180000172695 98.43 True CONTIG scf7180000172695 64707 correct 88684446 88697763 367 13471 NC_000014.9 scf7180000172696 98.14 True fake: scaffold gap size wrong estimation (local) 88697976 88711408 14027 27875 NC_000014.9 scf7180000172696 96.5 True fake: scaffold gap size wrong estimation (local) 88711402 88719171 28412 36113 NC_000014.9 scf7180000172696 97.94 True fake: scaffold gap size wrong estimation (local) 88719885 88727418 36840 44402 NC_000014.9 scf7180000172696 98.96 True fake: scaffold gap size wrong estimation (local) 88727658 88729716 44563 46621 NC_000014.9 scf7180000172696 99.95 True fake: scaffold gap size wrong estimation (local) 88729872 88731310 46766 48204 NC_000014.9 scf7180000172696 99.86 True fake: scaffold gap size wrong estimation (local) 88732463 88736109 49285 52930 NC_000014.9 scf7180000172696 99.94 True fake: scaffold gap size wrong estimation (local) 88736235 88761310 53013 77980 NC_000014.9 scf7180000172696 99.14 True fake: scaffold gap size wrong estimation (local) 88762456 88763273 79248 80065 NC_000014.9 scf7180000172696 99.88 True local misassembly 88763500 88766274 80066 82840 NC_000014.9 scf7180000172696 99.24 True fake: scaffold gap size wrong estimation (local) 88766788 88768593 83244 85048 NC_000014.9 scf7180000172696 99.94 True CONTIG scf7180000172696 85048 correct 18470088 18470953 4137 3272 NC_000014.9 scf7180000172697 99.65 True local misassembly 18466589 18469705 7254 4138 NC_000014.9 scf7180000172697 99.84 True fake: scaffold gap size wrong estimation (local) 18465032 18466561 8812 7283 NC_000014.9 scf7180000172697 99.61 True CONTIG scf7180000172697 10484 correct 23950547 23951237 730 40 NC_000014.9 scf7180000172698 100.0 True fake: scaffold gap size wrong estimation (local) 23945675 23947006 5343 4012 NC_000014.9 scf7180000172698 99.85 True fake: scaffold gap size wrong estimation (local) 23934274 23944797 16803 6197 NC_000014.9 scf7180000172698 99.34 True indel: stretch of mismatches 23921863 23934179 29143 16898 NC_000014.9 scf7180000172698 99.16 True fake: scaffold gap size wrong estimation (local) 23915525 23918732 40724 37517 NC_000014.9 scf7180000172698 99.94 True fake: scaffold gap size wrong estimation (local) 23913521 23915287 42687 40921 NC_000014.9 scf7180000172698 99.94 True fake: scaffold gap size wrong estimation (local) 23904583 23913347 51551 42787 NC_000014.9 scf7180000172698 99.93 True CONTIG scf7180000172698 51551 correct 67289089 67289768 1165 1844 NC_000014.9 scf7180000172699 95.97 True fake: scaffold gap size wrong estimation (local) 67290045 67291305 2110 3370 NC_000014.9 scf7180000172699 99.92 True fake: scaffold gap size wrong estimation (local) 67291556 67294763 3579 6786 NC_000014.9 scf7180000172699 99.97 True fake: scaffold gap size wrong estimation (local) 67296541 67298402 8391 10252 NC_000014.9 scf7180000172699 96.4 True fake: scaffold gap size wrong estimation (local) 67298485 67300396 10397 12308 NC_000014.9 scf7180000172699 99.95 True local misassembly 67300510 67303974 12309 15773 NC_000014.9 scf7180000172699 98.9 True fake: scaffold gap size wrong estimation (local) 67303975 67306180 16042 18247 NC_000014.9 scf7180000172699 99.77 True local misassembly 67306580 67308325 18248 19993 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67308651 67311075 20438 22862 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67311312 67315278 23020 27005 NC_000014.9 scf7180000172699 99.72 True fake: scaffold gap size wrong estimation (local) 67315503 67318807 27219 30523 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67319050 67324901 30752 36619 NC_000014.9 scf7180000172699 99.93 True fake: scaffold gap size wrong estimation (local) 67325172 67325973 36877 37678 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67326254 67326911 38017 38674 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67329618 67330471 41089 41942 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67330657 67339021 42133 50434 NC_000014.9 scf7180000172699 99.22 True fake: scaffold gap size wrong estimation (local) 67339265 67340038 50558 51331 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67342200 67345297 53873 56970 NC_000014.9 scf7180000172699 99.97 True fake: scaffold gap size wrong estimation (local) 67345497 67348417 57141 60144 NC_000014.9 scf7180000172699 99.83 True fake: scaffold gap size wrong estimation (local) 67348792 67352428 60321 63957 NC_000014.9 scf7180000172699 100.0 True fake: scaffold gap size wrong estimation (local) 67352852 67354891 64254 66293 NC_000014.9 scf7180000172699 99.8 True CONTIG scf7180000172699 66719 correct 21777714 21779070 1379 21 NC_000014.9 scf7180000172700 99.63 True fake: scaffold gap size wrong estimation (local) 21766172 21777457 12889 1638 NC_000014.9 scf7180000172700 99.31 True fake: scaffold gap size wrong estimation (local) 21763473 21764123 15785 15135 NC_000014.9 scf7180000172700 95.39 True local misassembly 21761926 21763002 16862 15786 NC_000014.9 scf7180000172700 98.98 True fake: scaffold gap size wrong estimation (local) 21759439 21761044 19217 17613 NC_000014.9 scf7180000172700 98.07 True local misassembly 21761078 21761770 19968 19276 NC_000014.9 scf7180000172700 99.28 True fake: scaffold gap size wrong estimation (local) 21734249 21753536 45519 26186 NC_000014.9 scf7180000172700 99.35 True fake: scaffold gap size wrong estimation (local) 21731313 21734067 48440 45718 NC_000014.9 scf7180000172700 98.43 True fake: scaffold gap size wrong estimation (local) 21726045 21731180 53730 48634 NC_000014.9 scf7180000172700 99.04 True fake: scaffold gap size wrong estimation (local) 21715783 21726000 64014 53811 NC_000014.9 scf7180000172700 99.5 True fake: scaffold gap size wrong estimation (local) 21698600 21715393 81024 64340 NC_000014.9 scf7180000172700 99.16 True fake: scaffold gap size wrong estimation (local) 21696786 21697717 82597 81667 NC_000014.9 scf7180000172700 99.14 True CONTIG scf7180000172700 82597 correct 38077218 38080498 1 3303 NC_000014.9 scf7180000172701 99.94 True fake: scaffold gap size wrong estimation (local) 38080716 38094612 3471 17370 NC_000014.9 scf7180000172701 99.95 True indel: indel (<= 5bp) 38094633 38095416 17390 18178 NC_000014.9 scf7180000172701 96.2 True relocation, scaffold gap is present, inconsistency = 4432084 33645083 33662479 35658 18248 NC_000014.9 scf7180000172701 99.84 True fake: scaffold gap size wrong estimation (local) 33636193 33644965 44526 35775 NC_000014.9 scf7180000172701 99.75 True fake: scaffold gap size wrong estimation (local) 33633932 33636081 46796 44647 NC_000014.9 scf7180000172701 99.95 True fake: not a misassembly (possible transposable element) 76978107 76978616 46833 47342 NC_000014.9 scf7180000172701 100.0 True fake: not a misassembly (possible transposable element) 33573020 33633970 108916 47343 NC_000014.9 scf7180000172701 98.39 True fake: scaffold gap size wrong estimation (local) 33560010 33572822 121879 109041 NC_000014.9 scf7180000172701 99.76 True fake: scaffold gap size wrong estimation (local) 33557895 33559766 123921 122050 NC_000014.9 scf7180000172701 99.79 True fake: scaffold gap size wrong estimation (local) 33498578 33557716 182885 124051 NC_000014.9 scf7180000172701 99.23 True fake: scaffold gap size wrong estimation (local) 33452781 33495097 228701 186394 NC_000014.9 scf7180000172701 99.69 True CONTIG scf7180000172701 228701 misassembled 60427461 60431596 1443 5578 NC_000014.9 scf7180000172702 99.98 True indel: indel (<= 5bp) 60431601 60433597 5579 7575 NC_000014.9 scf7180000172702 100.0 True local misassembly 60434787 60439847 7814 12874 NC_000014.9 scf7180000172702 99.98 True indel: indel (> 5bp) 60439931 60443924 12875 16868 NC_000014.9 scf7180000172702 98.32 True fake: scaffold gap size wrong estimation (local) 60444011 60444664 17026 17679 NC_000014.9 scf7180000172702 100.0 True fake: scaffold gap size wrong estimation (local) 60445887 60446713 18651 19477 NC_000014.9 scf7180000172702 99.88 True fake: scaffold gap size wrong estimation (local) 60449056 60450101 21511 22556 NC_000014.9 scf7180000172702 100.0 True fake: scaffold gap size wrong estimation (local) 60452183 60472476 24269 44421 NC_000014.9 scf7180000172702 98.96 True fake: scaffold gap size wrong estimation (local) 60475239 60477965 46876 49602 NC_000014.9 scf7180000172702 99.71 True fake: scaffold gap size wrong estimation (local) 60478184 60480232 49781 51825 NC_000014.9 scf7180000172702 99.46 True indel: indel (<= 5bp) 60480315 60490481 51910 62091 NC_000014.9 scf7180000172702 99.73 True relocation, inconsistency = -36636626 23853907 23855691 62143 63926 NC_000014.9 scf7180000172702 99.89 True fake: scaffold gap size wrong estimation (local) 23855966 23856861 64450 65345 NC_000014.9 scf7180000172702 99.89 True local misassembly 23857017 23857984 65346 66313 NC_000014.9 scf7180000172702 97.83 True CONTIG scf7180000172702 66313 misassembled 86093978 86095540 1566 4 NC_000014.9 scf7180000172703 99.94 True fake: scaffold gap size wrong estimation (local) 86082232 86093687 13330 1871 NC_000014.9 scf7180000172703 99.81 True fake: scaffold gap size wrong estimation (local) 86080288 86082106 15514 13490 NC_000014.9 scf7180000172703 99.72 True fake: scaffold gap size wrong estimation (local) 86071557 86074524 26384 23409 NC_000014.9 scf7180000172703 99.6 True fake: scaffold gap size wrong estimation (local) 86048715 86071415 49464 26504 NC_000014.9 scf7180000172703 98.96 True fake: scaffold gap size wrong estimation (local) 86047386 86048358 50806 49834 NC_000014.9 scf7180000172703 99.69 True fake: scaffold gap size wrong estimation (local) 86045849 86046761 52326 51411 NC_000014.9 scf7180000172703 99.89 True CONTIG scf7180000172703 52328 correct 101999217 102000591 1375 1 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101996685 101998887 4019 1911 NC_000014.9 scf7180000172704 95.73 True fake: not a misassembly (possible transposable element) 56306602 56308169 5587 4020 NC_000014.9 scf7180000172704 100.0 True fake: not a misassembly (possible transposable element) 101985596 101995861 15598 5608 NC_000014.9 scf7180000172704 97.08 True fake: scaffold gap size wrong estimation (local) 101983919 101984428 17306 16797 NC_000014.9 scf7180000172704 99.8 True fake: scaffold gap size wrong estimation (local) 101982610 101983668 18506 17448 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101976481 101982367 24563 18677 NC_000014.9 scf7180000172704 99.98 True fake: scaffold gap size wrong estimation (local) 101974364 101975975 26761 25150 NC_000014.9 scf7180000172704 99.94 True fake: scaffold gap size wrong estimation (local) 101971521 101974234 29660 26921 NC_000014.9 scf7180000172704 99.63 True fake: scaffold gap size wrong estimation (local) 101969211 101970480 31960 30691 NC_000014.9 scf7180000172704 99.45 True fake: scaffold gap size wrong estimation (local) 101968304 101969026 33135 32413 NC_000014.9 scf7180000172704 99.59 True fake: scaffold gap size wrong estimation (local) 101960095 101967633 41061 33571 NC_000014.9 scf7180000172704 99.3 True fake: scaffold gap size wrong estimation (local) 101959299 101959978 41913 41234 NC_000014.9 scf7180000172704 99.85 True fake: scaffold gap size wrong estimation (local) 101957380 101959048 43815 42138 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101955354 101957152 45830 44032 NC_000014.9 scf7180000172704 99.78 True fake: scaffold gap size wrong estimation (local) 101952576 101955201 48587 45960 NC_000014.9 scf7180000172704 99.89 True fake: scaffold gap size wrong estimation (local) 101950141 101951507 51124 49758 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101947532 101949725 53774 51579 NC_000014.9 scf7180000172704 99.73 True fake: scaffold gap size wrong estimation (local) 101944224 101944818 57244 56650 NC_000014.9 scf7180000172704 99.83 True fake: scaffold gap size wrong estimation (local) 101943212 101944092 58206 57326 NC_000014.9 scf7180000172704 97.05 True local misassembly 101942513 101943086 58795 58222 NC_000014.9 scf7180000172704 99.65 True fake: scaffold gap size wrong estimation (local) 101937310 101939331 64460 62439 NC_000014.9 scf7180000172704 99.31 True fake: scaffold gap size wrong estimation (local) 101934623 101936132 67152 65643 NC_000014.9 scf7180000172704 99.93 True fake: scaffold gap size wrong estimation (local) 101932686 101934336 69110 67460 NC_000014.9 scf7180000172704 99.88 True fake: scaffold gap size wrong estimation (local) 101930727 101932436 71086 69377 NC_000014.9 scf7180000172704 99.53 True fake: scaffold gap size wrong estimation (local) 101922422 101930566 79326 71182 NC_000014.9 scf7180000172704 99.95 True fake: scaffold gap size wrong estimation (local) 101921345 101922271 80551 79625 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101919979 101920915 81620 80684 NC_000014.9 scf7180000172704 100.0 True fake: scaffold gap size wrong estimation (local) 101911246 101919887 90575 81733 NC_000014.9 scf7180000172704 95.33 True fake: scaffold gap size wrong estimation (local) 101908584 101910578 93019 91025 NC_000014.9 scf7180000172704 99.85 True fake: scaffold gap size wrong estimation (local) 101904424 101908425 97108 93131 NC_000014.9 scf7180000172704 98.14 True fake: scaffold gap size wrong estimation (local) 101899964 101904294 101642 97391 NC_000014.9 scf7180000172704 97.86 True CONTIG scf7180000172704 101665 correct 68001917 68002601 1 685 NC_000014.9 scf7180000172705 100.0 True local misassembly 67998594 68001986 706 4098 NC_000014.9 scf7180000172705 100.0 True fake: scaffold gap size wrong estimation (local) 68002502 68003316 4527 5341 NC_000014.9 scf7180000172705 99.63 True fake: scaffold gap size wrong estimation (local) 68004346 68005049 6321 7024 NC_000014.9 scf7180000172705 100.0 True fake: scaffold gap size wrong estimation (local) 68005326 68017217 7232 19123 NC_000014.9 scf7180000172705 99.95 True fake: scaffold gap size wrong estimation (local) 68017450 68039309 19262 41390 NC_000014.9 scf7180000172705 98.78 True fake: scaffold gap size wrong estimation (local) 68039428 68044984 41494 47050 NC_000014.9 scf7180000172705 100.0 True fake: scaffold gap size wrong estimation (local) 68045257 68048248 47231 50255 NC_000014.9 scf7180000172705 99.5 True fake: scaffold gap size wrong estimation (local) 68049333 68056816 51217 58709 NC_000014.9 scf7180000172705 99.89 True fake: scaffold gap size wrong estimation (local) 68057042 68061288 58915 63172 NC_000014.9 scf7180000172705 99.88 True CONTIG scf7180000172705 63194 correct 37464661 37467904 1 3244 NC_000014.9 scf7180000172706 99.97 True fake: scaffold gap size wrong estimation (local) 37468047 37479415 3333 14713 NC_000014.9 scf7180000172706 99.92 True fake: scaffold gap size wrong estimation (local) 37479238 37482832 15072 18642 NC_000014.9 scf7180000172706 99.14 True fake: scaffold gap size wrong estimation (local) 37483322 37484355 19158 20191 NC_000014.9 scf7180000172706 99.9 True fake: scaffold gap size wrong estimation (local) 37485719 37487082 21626 22980 NC_000014.9 scf7180000172706 99.26 True fake: scaffold gap size wrong estimation (local) 37487890 37488761 23956 24827 NC_000014.9 scf7180000172706 99.77 True fake: scaffold gap size wrong estimation (local) 37489526 37495113 25651 31168 NC_000014.9 scf7180000172706 98.64 True fake: scaffold gap size wrong estimation (local) 37497229 37503465 32932 39168 NC_000014.9 scf7180000172706 99.82 True fake: scaffold gap size wrong estimation (local) 37505144 37506254 40562 41672 NC_000014.9 scf7180000172706 97.66 True fake: scaffold gap size wrong estimation (local) 37507231 37520939 42535 56464 NC_000014.9 scf7180000172706 98.56 True fake: scaffold gap size wrong estimation (local) 37521218 37524583 56669 60052 NC_000014.9 scf7180000172706 99.97 True fake: scaffold gap size wrong estimation (local) 37524746 37526467 60158 61877 NC_000014.9 scf7180000172706 99.88 True fake: scaffold gap size wrong estimation (local) 37526646 37530867 61993 66214 NC_000014.9 scf7180000172706 99.95 True fake: scaffold gap size wrong estimation (local) 37531027 37538955 66332 74268 NC_000014.9 scf7180000172706 99.95 True fake: scaffold gap size wrong estimation (local) 37539189 37543431 74448 78690 NC_000014.9 scf7180000172706 99.98 True fake: scaffold gap size wrong estimation (local) 37543508 37551636 78771 86899 NC_000014.9 scf7180000172706 99.96 True fake: scaffold gap size wrong estimation (local) 37551893 37554480 87111 89698 NC_000014.9 scf7180000172706 99.77 True fake: scaffold gap size wrong estimation (local) 37556242 37625293 91341 160321 NC_000014.9 scf7180000172706 99.63 True fake: scaffold gap size wrong estimation (local) 37625554 37627342 160751 162539 NC_000014.9 scf7180000172706 100.0 True fake: scaffold gap size wrong estimation (local) 37629422 37630026 164490 165094 NC_000014.9 scf7180000172706 99.83 True fake: scaffold gap size wrong estimation (local) 37630027 37630848 165542 166363 NC_000014.9 scf7180000172706 99.64 True fake: scaffold gap size wrong estimation (local) 37631823 37635724 167263 171164 NC_000014.9 scf7180000172706 99.85 True fake: scaffold gap size wrong estimation (local) 37635993 37639618 171382 175134 NC_000014.9 scf7180000172706 96.44 True fake: scaffold gap size wrong estimation (local) 37639924 37643052 175270 178470 NC_000014.9 scf7180000172706 98.18 True fake: scaffold gap size wrong estimation (local) 37643147 37651393 178491 186790 NC_000014.9 scf7180000172706 99.96 True fake: scaffold gap size wrong estimation (local) 37651717 37654581 187085 189949 NC_000014.9 scf7180000172706 100.0 True CONTIG scf7180000172706 189949 correct 49456372 49458437 2337 272 NC_000014.9 scf7180000172707 99.95 True fake: scaffold gap size wrong estimation (local) 49442635 49456166 15922 2494 NC_000014.9 scf7180000172707 98.99 True fake: scaffold gap size wrong estimation (local) 49436342 49442544 22202 16001 NC_000014.9 scf7180000172707 99.84 True fake: scaffold gap size wrong estimation (local) 49431894 49435873 26681 22547 NC_000014.9 scf7180000172707 96.5 True fake: scaffold gap size wrong estimation (local) 49420902 49431533 37549 26918 NC_000014.9 scf7180000172707 99.95 True fake: scaffold gap size wrong estimation (local) 49416739 49420684 41661 37714 NC_000014.9 scf7180000172707 99.92 True fake: not a misassembly (possible transposable element) 97950245 97950992 42429 41682 NC_000014.9 scf7180000172707 100.0 True fake: not a misassembly (possible transposable element) 49399424 49416954 59847 42430 NC_000014.9 scf7180000172707 99.21 True indel: indel (> 5bp) 49396610 49399209 62669 60070 NC_000014.9 scf7180000172707 99.73 True fake: scaffold gap size wrong estimation (local) 49395201 49395828 64372 63745 NC_000014.9 scf7180000172707 98.73 True fake: scaffold gap size wrong estimation (local) 49390479 49393148 68884 66215 NC_000014.9 scf7180000172707 99.85 True fake: scaffold gap size wrong estimation (local) 49387867 49389153 71463 70239 NC_000014.9 scf7180000172707 95.11 True fake: scaffold gap size wrong estimation (local) 49386376 49387690 72913 71599 NC_000014.9 scf7180000172707 99.92 True fake: scaffold gap size wrong estimation (local) 49371238 49386218 88291 73075 NC_000014.9 scf7180000172707 97.9 True fake: scaffold gap size wrong estimation (local) 49369799 49371038 89790 88551 NC_000014.9 scf7180000172707 97.98 True local misassembly 49367819 49369608 91580 89791 NC_000014.9 scf7180000172707 99.94 True fake: scaffold gap size wrong estimation (local) 49362382 49367567 97228 92056 NC_000014.9 scf7180000172707 99.71 True fake: scaffold gap size wrong estimation (local) 49353626 49357382 105828 102072 NC_000014.9 scf7180000172707 99.89 True fake: scaffold gap size wrong estimation (local) 49351615 49352751 107841 106707 NC_000014.9 scf7180000172707 99.65 True indel: indel (> 5bp) 49350718 49351477 108728 107969 NC_000014.9 scf7180000172707 99.87 True relocation, scaffold gap is present, inconsistency = 10021436 39328414 39329083 109596 108927 NC_000014.9 scf7180000172707 99.7 True fake: scaffold gap size wrong estimation (local) 39325929 39327713 112061 110278 NC_000014.9 scf7180000172707 99.78 True fake: scaffold gap size wrong estimation (local) 39324792 39325364 113298 112726 NC_000014.9 scf7180000172707 95.99 True local misassembly 39322541 39324614 115372 113299 NC_000014.9 scf7180000172707 99.08 True fake: scaffold gap size wrong estimation (local) 39314628 39321396 123108 116507 NC_000014.9 scf7180000172707 97.35 True fake: scaffold gap size wrong estimation (local) 39312890 39314395 124956 123451 NC_000014.9 scf7180000172707 99.93 True indel: indel (<= 5bp) 39312061 39312702 125784 125143 NC_000014.9 scf7180000172707 95.17 True fake: scaffold gap size wrong estimation (local) 39301157 39311467 136747 126303 NC_000014.9 scf7180000172707 98.67 True CONTIG scf7180000172707 139200 misassembled 104124865 104126564 1 1700 NC_000014.9 scf7180000172708 99.88 True fake: scaffold gap size wrong estimation (local) 104127807 104132046 2903 7122 NC_000014.9 scf7180000172708 98.69 True fake: scaffold gap size wrong estimation (local) 104132992 104136321 8078 11407 NC_000014.9 scf7180000172708 99.97 True fake: scaffold gap size wrong estimation (local) 104136417 104203698 11489 78509 NC_000014.9 scf7180000172708 99.42 True fake: scaffold gap size wrong estimation (local) 104204963 104206762 79641 81440 NC_000014.9 scf7180000172708 99.83 True indel: indel (<= 5bp) 104206765 104208099 81441 82775 NC_000014.9 scf7180000172708 99.7 True local misassembly 104209410 104211589 83168 85347 NC_000014.9 scf7180000172708 99.82 True fake: scaffold gap size wrong estimation (local) 104211590 104215201 85567 89178 NC_000014.9 scf7180000172708 99.75 True local misassembly 104215477 104217145 89860 91483 NC_000014.9 scf7180000172708 96.83 True fake: scaffold gap size wrong estimation (local) 104217471 104225224 91920 99681 NC_000014.9 scf7180000172708 99.87 True fake: scaffold gap size wrong estimation (local) 104225873 104234991 100196 109875 NC_000014.9 scf7180000172708 97.28 True fake: scaffold gap size wrong estimation (local) 104235140 104241948 109971 116643 NC_000014.9 scf7180000172708 97.47 True fake: scaffold gap size wrong estimation (local) 104242909 104251016 117656 125716 NC_000014.9 scf7180000172708 99.35 True fake: scaffold gap size wrong estimation (local) 104251878 104265311 126934 140445 NC_000014.9 scf7180000172708 98.99 True fake: scaffold gap size wrong estimation (local) 104265452 104268594 140488 143743 NC_000014.9 scf7180000172708 99.71 True fake: scaffold gap size wrong estimation (local) 104271103 104300919 145999 175464 NC_000014.9 scf7180000172708 98.41 True fake: scaffold gap size wrong estimation (local) 104301020 104324879 175654 199138 NC_000014.9 scf7180000172708 98.17 True fake: scaffold gap size wrong estimation (local) 104325574 104347680 199799 221727 NC_000014.9 scf7180000172708 98.96 True fake: scaffold gap size wrong estimation (local) 104347867 104366025 221857 239793 NC_000014.9 scf7180000172708 98.77 True fake: scaffold gap size wrong estimation (local) 104366113 104374100 239924 247939 NC_000014.9 scf7180000172708 99.86 True fake: not a misassembly (possible transposable element) 105185217 105186332 247940 249056 NC_000014.9 scf7180000172708 99.77 True fake: not a misassembly (possible transposable element) 104373999 104407737 249087 282829 NC_000014.9 scf7180000172708 99.49 True fake: scaffold gap size wrong estimation (local) 104407953 104409646 282956 284649 NC_000014.9 scf7180000172708 100.0 True fake: scaffold gap size wrong estimation (local) 104409892 104412054 284931 287093 NC_000014.9 scf7180000172708 99.86 True CONTIG scf7180000172708 287093 correct 84398997 84399938 923 1 NC_000014.9 scf7180000172709 97.13 True fake: scaffold gap size wrong estimation (local) 84378940 84398635 21093 1539 NC_000014.9 scf7180000172709 99.15 True fake: scaffold gap size wrong estimation (local) 84376295 84378523 23744 21516 NC_000014.9 scf7180000172709 99.96 True fake: scaffold gap size wrong estimation (local) 84364324 84376196 35634 23871 NC_000014.9 scf7180000172709 98.9 True fake: scaffold gap size wrong estimation (local) 84359979 84364076 40161 36064 NC_000014.9 scf7180000172709 99.66 True fake: not a misassembly (possible transposable element) 89696566 89697691 41286 40162 NC_000014.9 scf7180000172709 99.83 True fake: not a misassembly (possible transposable element) 84357653 84359604 43238 41287 NC_000014.9 scf7180000172709 99.85 True fake: scaffold gap size wrong estimation (local) 84330445 84357581 70840 43427 NC_000014.9 scf7180000172709 98.79 True fake: scaffold gap size wrong estimation (local) 84317461 84330163 83555 71009 NC_000014.9 scf7180000172709 98.1 True fake: scaffold gap size wrong estimation (local) 84313797 84315038 84817 83576 NC_000014.9 scf7180000172709 100.0 True fake: scaffold gap size wrong estimation (local) 84287737 84317451 114546 84891 NC_000014.9 scf7180000172709 99.6 True indel: indel (> 5bp) 84281822 84287559 120462 114718 NC_000014.9 scf7180000172709 99.98 True fake: scaffold gap size wrong estimation (local) 84274096 84281550 127946 120599 NC_000014.9 scf7180000172709 98.46 True fake: scaffold gap size wrong estimation (local) 84261311 84273887 140638 128066 NC_000014.9 scf7180000172709 99.92 True fake: scaffold gap size wrong estimation (local) 84239178 84261087 162763 140830 NC_000014.9 scf7180000172709 99.78 True fake: scaffold gap size wrong estimation (local) 84234273 84238819 167570 163011 NC_000014.9 scf7180000172709 99.71 True fake: scaffold gap size wrong estimation (local) 84206114 84234095 196048 167693 NC_000014.9 scf7180000172709 98.13 True fake: scaffold gap size wrong estimation (local) 84197627 84205992 204467 196149 NC_000014.9 scf7180000172709 98.9 True fake: scaffold gap size wrong estimation (local) 84192453 84196822 209836 205471 NC_000014.9 scf7180000172709 99.89 True fake: scaffold gap size wrong estimation (local) 84175983 84192341 226596 209991 NC_000014.9 scf7180000172709 98.79 True fake: scaffold gap size wrong estimation (local) 84156786 84175726 245776 226777 NC_000014.9 scf7180000172709 99.9 True fake: scaffold gap size wrong estimation (local) 84150898 84156719 251626 245798 NC_000014.9 scf7180000172709 99.71 True fake: scaffold gap size wrong estimation (local) 84141715 84150712 260774 251764 NC_000014.9 scf7180000172709 99.61 True fake: scaffold gap size wrong estimation (local) 84131395 84141218 271012 261196 NC_000014.9 scf7180000172709 99.69 True fake: scaffold gap size wrong estimation (local) 84117693 84131118 284663 271248 NC_000014.9 scf7180000172709 99.53 True relocation, scaffold gap is present, inconsistency = 46334241 37777789 37781426 290327 286689 NC_000014.9 scf7180000172709 99.37 True fake: scaffold gap size wrong estimation (local) 37776230 37776880 292434 291784 NC_000014.9 scf7180000172709 96.77 True local misassembly 37773229 37775796 295250 292683 NC_000014.9 scf7180000172709 98.44 True fake: scaffold gap size wrong estimation (local) 37772265 37773228 296249 295286 NC_000014.9 scf7180000172709 98.13 True CONTIG scf7180000172709 297190 misassembled 60747206 60748108 1413 511 NC_000014.9 scf7180000172710 99.89 True fake: scaffold gap size wrong estimation (local) 60743513 60746326 5222 2409 NC_000014.9 scf7180000172710 99.89 True fake: scaffold gap size wrong estimation (local) 60741741 60743321 6918 5338 NC_000014.9 scf7180000172710 99.94 True fake: scaffold gap size wrong estimation (local) 60740135 60741445 8495 7185 NC_000014.9 scf7180000172710 100.0 True fake: scaffold gap size wrong estimation (local) 60738454 60739903 10229 8780 NC_000014.9 scf7180000172710 99.79 True fake: scaffold gap size wrong estimation (local) 60731727 60737900 16846 10673 NC_000014.9 scf7180000172710 99.92 True fake: scaffold gap size wrong estimation (local) 60726655 60730688 21961 17878 NC_000014.9 scf7180000172710 99.95 True fake: scaffold gap size wrong estimation (local) 60716603 60725431 32174 23205 NC_000014.9 scf7180000172710 97.48 True fake: scaffold gap size wrong estimation (local) 60714976 60715906 33649 32719 NC_000014.9 scf7180000172710 100.0 True fake: scaffold gap size wrong estimation (local) 60711774 60714790 36983 33967 NC_000014.9 scf7180000172710 99.9 True fake: scaffold gap size wrong estimation (local) 60705722 60711524 43061 37202 NC_000014.9 scf7180000172710 99.57 True fake: scaffold gap size wrong estimation (local) 60704756 60705612 43976 43124 NC_000014.9 scf7180000172710 99.3 True fake: scaffold gap size wrong estimation (local) 60703644 60704591 45021 44097 NC_000014.9 scf7180000172710 97.2 True fake: scaffold gap size wrong estimation (local) 60702309 60703042 46358 45625 NC_000014.9 scf7180000172710 100.0 True fake: scaffold gap size wrong estimation (local) 60701078 60701618 47312 46772 NC_000014.9 scf7180000172710 99.82 True fake: scaffold gap size wrong estimation (local) 60699763 60700894 48967 47836 NC_000014.9 scf7180000172710 100.0 True fake: scaffold gap size wrong estimation (local) 60696459 60699143 52184 49500 NC_000014.9 scf7180000172710 99.89 True fake: scaffold gap size wrong estimation (local) 60695297 60695965 53455 52787 NC_000014.9 scf7180000172710 100.0 True fake: scaffold gap size wrong estimation (local) 60693705 60694721 55035 54019 NC_000014.9 scf7180000172710 99.8 True fake: scaffold gap size wrong estimation (local) 60690536 60692486 58127 56052 NC_000014.9 scf7180000172710 95.68 True fake: scaffold gap size wrong estimation (local) 60686020 60690362 62467 58311 NC_000014.9 scf7180000172710 95.53 True fake: scaffold gap size wrong estimation (local) 60684123 60685917 64360 62566 NC_000014.9 scf7180000172710 99.94 True fake: scaffold gap size wrong estimation (local) 60680628 60682744 67889 65758 NC_000014.9 scf7180000172710 99.72 True fake: scaffold gap size wrong estimation (local) 60678813 60680331 69508 67990 NC_000014.9 scf7180000172710 99.8 True local misassembly 60677446 60678812 70963 69597 NC_000014.9 scf7180000172710 98.39 True fake: scaffold gap size wrong estimation (local) 60676739 60677445 71792 71086 NC_000014.9 scf7180000172710 96.75 True fake: scaffold gap size wrong estimation (local) 60674354 60676100 73986 72240 NC_000014.9 scf7180000172710 99.83 True fake: scaffold gap size wrong estimation (local) 60672568 60674255 75756 74081 NC_000014.9 scf7180000172710 98.34 True fake: scaffold gap size wrong estimation (local) 60671589 60672130 76769 76228 NC_000014.9 scf7180000172710 99.26 True fake: scaffold gap size wrong estimation (local) 60667664 60671387 80607 76869 NC_000014.9 scf7180000172710 99.97 True fake: scaffold gap size wrong estimation (local) 60664723 60667485 83944 81187 NC_000014.9 scf7180000172710 99.64 True fake: scaffold gap size wrong estimation (local) 60662243 60664462 86563 84389 NC_000014.9 scf7180000172710 97.15 True fake: scaffold gap size wrong estimation (local) 60661117 60662097 87976 86996 NC_000014.9 scf7180000172710 99.9 True fake: scaffold gap size wrong estimation (local) 60635108 60660019 113640 88788 NC_000014.9 scf7180000172710 99.37 True fake: scaffold gap size wrong estimation (local) 60633777 60634991 115066 113852 NC_000014.9 scf7180000172710 99.75 True fake: scaffold gap size wrong estimation (local) 60627660 60633549 121065 115169 NC_000014.9 scf7180000172710 99.9 True fake: scaffold gap size wrong estimation (local) 60626725 60627533 122125 121317 NC_000014.9 scf7180000172710 99.88 True fake: scaffold gap size wrong estimation (local) 60620666 60625732 128185 123106 NC_000014.9 scf7180000172710 99.78 True fake: scaffold gap size wrong estimation (local) 60615497 60620458 133289 128400 NC_000014.9 scf7180000172710 98.41 True fake: scaffold gap size wrong estimation (local) 60613132 60615211 135571 133492 NC_000014.9 scf7180000172710 99.9 True fake: scaffold gap size wrong estimation (local) 60611009 60611968 137699 136740 NC_000014.9 scf7180000172710 100.0 True CONTIG scf7180000172710 137703 correct 84946414 84988805 16 42988 NC_000014.9 scf7180000172711 98.28 True fake: scaffold gap size wrong estimation (local) 84988991 85004849 43116 59003 NC_000014.9 scf7180000172711 99.78 True fake: scaffold gap size wrong estimation (local) 85005159 85015747 59283 69860 NC_000014.9 scf7180000172711 99.72 True fake: scaffold gap size wrong estimation (local) 85015848 85018791 69953 72896 NC_000014.9 scf7180000172711 99.93 True relocation, scaffold gap is present, inconsistency = -38836334 46183207 46205247 73646 95671 NC_000014.9 scf7180000172711 99.69 True fake: scaffold gap size wrong estimation (local) 46203677 46205146 95711 97180 NC_000014.9 scf7180000172711 99.8 True CONTIG scf7180000172711 97418 misassembled 48256087 48256799 1 712 NC_000014.9 scf7180000172712 99.3 True fake: scaffold gap size wrong estimation (local) 48258780 48259975 2677 3869 NC_000014.9 scf7180000172712 98.75 True fake: scaffold gap size wrong estimation (local) 48260175 48262472 4173 6470 NC_000014.9 scf7180000172712 99.83 True fake: scaffold gap size wrong estimation (local) 48263858 48264869 7874 8883 NC_000014.9 scf7180000172712 96.94 True relocation, scaffold gap is present, inconsistency = 1716995 46545178 46546590 10581 9156 NC_000014.9 scf7180000172712 97.16 True local misassembly 46535367 46544875 20484 10976 NC_000014.9 scf7180000172712 99.82 True fake: scaffold gap size wrong estimation (local) 46533168 46535111 22651 20708 NC_000014.9 scf7180000172712 99.95 True indel: indel (<= 5bp) 46532039 46532721 23775 23095 NC_000014.9 scf7180000172712 97.66 True fake: scaffold gap size wrong estimation (local) 46514686 46529758 41018 25937 NC_000014.9 scf7180000172712 99.62 True fake: scaffold gap size wrong estimation (local) 46498803 46509111 58409 47988 NC_000014.9 scf7180000172712 99.13 True fake: scaffold gap size wrong estimation (local) 46485824 46498199 71887 59240 NC_000014.9 scf7180000172712 97.35 True fake: scaffold gap size wrong estimation (local) 46474666 46485638 83140 72160 NC_000014.9 scf7180000172712 99.4 True fake: scaffold gap size wrong estimation (local) 46467795 46473208 89823 84421 NC_000014.9 scf7180000172712 99.63 True fake: scaffold gap size wrong estimation (local) 46465365 46467607 92206 89964 NC_000014.9 scf7180000172712 99.78 True fake: scaffold gap size wrong estimation (local) 46461436 46465077 96119 92478 NC_000014.9 scf7180000172712 99.92 True fake: scaffold gap size wrong estimation (local) 46443234 46461305 114588 96244 NC_000014.9 scf7180000172712 96.68 True fake: scaffold gap size wrong estimation (local) 46441551 46442228 116146 115469 NC_000014.9 scf7180000172712 99.56 True fake: scaffold gap size wrong estimation (local) 46440838 46441550 117156 116444 NC_000014.9 scf7180000172712 99.3 True fake: scaffold gap size wrong estimation (local) 46439422 46440310 118696 117808 NC_000014.9 scf7180000172712 99.44 True fake: scaffold gap size wrong estimation (local) 46429696 46438383 128284 119622 NC_000014.9 scf7180000172712 98.17 True fake: scaffold gap size wrong estimation (local) 46420234 46427946 137640 129949 NC_000014.9 scf7180000172712 99.14 True fake: scaffold gap size wrong estimation (local) 46395744 46419049 162076 138723 NC_000014.9 scf7180000172712 99.68 True fake: scaffold gap size wrong estimation (local) 46388488 46395485 169237 162229 NC_000014.9 scf7180000172712 99.87 True fake: scaffold gap size wrong estimation (local) 46375098 46387783 182677 169970 NC_000014.9 scf7180000172712 99.63 True fake: scaffold gap size wrong estimation (local) 46374030 46374984 183747 182793 NC_000014.9 scf7180000172712 99.58 True local misassembly 46372916 46373507 184861 184270 NC_000014.9 scf7180000172712 99.49 True fake: scaffold gap size wrong estimation (local) 46359806 46372328 197507 185318 NC_000014.9 scf7180000172712 96.81 True fake: scaffold gap size wrong estimation (local) 46351576 46359157 206010 198600 NC_000014.9 scf7180000172712 96.57 True fake: scaffold gap size wrong estimation (extensive) 46347498 46351565 218533 214466 NC_000014.9 scf7180000172712 99.53 True fake: scaffold gap size wrong estimation (local) 46337331 46346658 228582 219255 NC_000014.9 scf7180000172712 99.92 True fake: scaffold gap size wrong estimation (local) 46316808 46337136 249049 228720 NC_000014.9 scf7180000172712 99.89 True fake: scaffold gap size wrong estimation (local) 46298470 46316560 267177 249266 NC_000014.9 scf7180000172712 98.92 True CONTIG scf7180000172712 267360 misassembled 43489450 43492614 3165 1 NC_000014.9 scf7180000172713 99.59 True indel: indel (<= 5bp) 43469548 43489256 23014 3361 NC_000014.9 scf7180000172713 99.64 True fake: scaffold gap size wrong estimation (local) 43465653 43469347 26805 23111 NC_000014.9 scf7180000172713 99.95 True fake: scaffold gap size wrong estimation (local) 43460518 43465539 31875 26869 NC_000014.9 scf7180000172713 99.01 True fake: scaffold gap size wrong estimation (local) 43459384 43460334 33016 32066 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43448446 43459269 44406 33248 NC_000014.9 scf7180000172713 96.94 True fake: scaffold gap size wrong estimation (local) 43447181 43448266 45743 44658 NC_000014.9 scf7180000172713 98.16 True fake: scaffold gap size wrong estimation (local) 43445451 43447180 47485 45756 NC_000014.9 scf7180000172713 99.71 True fake: scaffold gap size wrong estimation (local) 43440593 43445450 52767 47910 NC_000014.9 scf7180000172713 99.84 True fake: scaffold gap size wrong estimation (local) 43440024 43440587 54118 53555 NC_000014.9 scf7180000172713 98.76 True indel: stretch of mismatches 43429024 43439832 64860 54310 NC_000014.9 scf7180000172713 97.5 True fake: scaffold gap size wrong estimation (local) 43426431 43427622 67391 66200 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43425200 43425783 68416 67833 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43424319 43425070 69641 68874 NC_000014.9 scf7180000172713 99.73 True fake: scaffold gap size wrong estimation (local) 43406378 43423902 87375 69825 NC_000014.9 scf7180000172713 99.79 True fake: scaffold gap size wrong estimation (local) 43398643 43405578 95146 88105 NC_000014.9 scf7180000172713 98.65 True fake: scaffold gap size wrong estimation (local) 43392846 43398438 100847 95253 NC_000014.9 scf7180000172713 99.84 True fake: scaffold gap size wrong estimation (local) 43390607 43391294 102931 102244 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43389476 43390451 104210 103235 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43376262 43389213 117156 104332 NC_000014.9 scf7180000172713 98.96 True fake: scaffold gap size wrong estimation (local) 43368330 43370720 128691 126301 NC_000014.9 scf7180000172713 99.79 True fake: scaffold gap size wrong estimation (local) 43351562 43368171 145339 128835 NC_000014.9 scf7180000172713 99.23 True fake: scaffold gap size wrong estimation (local) 43347434 43351403 149424 145455 NC_000014.9 scf7180000172713 100.0 True fake: scaffold gap size wrong estimation (local) 43344295 43344987 152169 151482 NC_000014.9 scf7180000172713 98.99 True fake: scaffold gap size wrong estimation (local) 43335089 43342800 161327 153616 NC_000014.9 scf7180000172713 99.96 True fake: scaffold gap size wrong estimation (local) 43324343 43334869 171876 161456 NC_000014.9 scf7180000172713 97.16 True fake: scaffold gap size wrong estimation (local) 43315532 43324196 180630 171966 NC_000014.9 scf7180000172713 99.97 True fake: scaffold gap size wrong estimation (local) 43311029 43315536 185801 181294 NC_000014.9 scf7180000172713 99.98 True fake: scaffold gap size wrong estimation (local) 43296517 43310766 200251 185994 NC_000014.9 scf7180000172713 99.99 True fake: scaffold gap size wrong estimation (local) 43283118 43295278 213525 201332 NC_000014.9 scf7180000172713 99.88 True fake: scaffold gap size wrong estimation (local) 43281783 43282850 214929 213862 NC_000014.9 scf7180000172713 100.0 True CONTIG scf7180000172713 214929 correct 76119863 76120582 1 720 NC_000014.9 scf7180000172714 99.72 True fake: scaffold gap size wrong estimation (local) 76122433 76128579 2342 8488 NC_000014.9 scf7180000172714 99.79 True fake: scaffold gap size wrong estimation (local) 76129506 76141363 9347 21260 NC_000014.9 scf7180000172714 99.71 True fake: scaffold gap size wrong estimation (local) 76141561 76143099 21419 22968 NC_000014.9 scf7180000172714 99.54 True fake: scaffold gap size wrong estimation (local) 76143313 76150171 23135 30013 NC_000014.9 scf7180000172714 99.21 True fake: scaffold gap size wrong estimation (local) 76150802 76165286 30638 45160 NC_000014.9 scf7180000172714 99.66 True fake: scaffold gap size wrong estimation (local) 76165496 76174750 45332 54545 NC_000014.9 scf7180000172714 99.36 True fake: scaffold gap size wrong estimation (local) 76174909 76179932 54644 59675 NC_000014.9 scf7180000172714 99.84 True fake: scaffold gap size wrong estimation (local) 76180080 76182103 59805 61828 NC_000014.9 scf7180000172714 99.8 True fake: scaffold gap size wrong estimation (local) 76182591 76215233 62329 94995 NC_000014.9 scf7180000172714 99.79 True fake: scaffold gap size wrong estimation (local) 76215765 76234988 95448 114580 NC_000014.9 scf7180000172714 99.11 True fake: scaffold gap size wrong estimation (local) 76235170 76242956 114806 122751 NC_000014.9 scf7180000172714 96.85 True fake: scaffold gap size wrong estimation (local) 76243185 76244294 123004 124113 NC_000014.9 scf7180000172714 99.91 True fake: scaffold gap size wrong estimation (local) 76244494 76260525 124199 140250 NC_000014.9 scf7180000172714 99.84 True fake: scaffold gap size wrong estimation (local) 76260713 76288610 140382 168185 NC_000014.9 scf7180000172714 99.23 True fake: scaffold gap size wrong estimation (local) 76288858 76299473 168373 178984 NC_000014.9 scf7180000172714 99.27 True fake: scaffold gap size wrong estimation (local) 76299710 76300248 179140 179678 NC_000014.9 scf7180000172714 99.63 True fake: scaffold gap size wrong estimation (local) 76300547 76302796 179997 182246 NC_000014.9 scf7180000172714 99.87 True fake: scaffold gap size wrong estimation (local) 76302902 76310699 182349 190146 NC_000014.9 scf7180000172714 99.91 True fake: scaffold gap size wrong estimation (local) 76310994 76324971 190416 204426 NC_000014.9 scf7180000172714 99.64 True fake: scaffold gap size wrong estimation (local) 76325233 76332367 204642 211776 NC_000014.9 scf7180000172714 99.85 True fake: scaffold gap size wrong estimation (local) 76333471 76338765 212750 218044 NC_000014.9 scf7180000172714 99.91 True indel: indel (<= 5bp) 76338845 76354713 218127 234193 NC_000014.9 scf7180000172714 98.12 True fake: scaffold gap size wrong estimation (local) 76354949 76367962 234355 247169 NC_000014.9 scf7180000172714 98.4 True fake: scaffold gap size wrong estimation (local) 76368239 76386475 247467 265541 NC_000014.9 scf7180000172714 98.9 True fake: scaffold gap size wrong estimation (local) 76386683 76388192 265702 267211 NC_000014.9 scf7180000172714 100.0 True fake: scaffold gap size wrong estimation (local) 76388193 76390271 267232 269310 NC_000014.9 scf7180000172714 99.9 True indel: indel (> 5bp) 76390309 76393972 269311 272974 NC_000014.9 scf7180000172714 99.43 True fake: scaffold gap size wrong estimation (local) 76394251 76396092 273264 275105 NC_000014.9 scf7180000172714 99.78 True fake: scaffold gap size wrong estimation (local) 76396178 76403777 275254 282853 NC_000014.9 scf7180000172714 99.82 True fake: scaffold gap size wrong estimation (local) 76404179 76406491 284202 286514 NC_000014.9 scf7180000172714 99.74 True fake: scaffold gap size wrong estimation (local) 76406492 76408561 286526 288595 NC_000014.9 scf7180000172714 99.13 True indel: indel (> 5bp) 76408562 76410841 288613 290892 NC_000014.9 scf7180000172714 97.02 True fake: scaffold gap size wrong estimation (local) 76411277 76413893 291377 293993 NC_000014.9 scf7180000172714 99.04 True fake: not a misassembly (possible transposable element) 76742928 76744069 295631 294490 NC_000014.9 scf7180000172714 99.58 True fake: not a misassembly (possible transposable element) 76415444 76416609 295632 296829 NC_000014.9 scf7180000172714 98.81 True relocation, scaffold gap is present, inconsistency = 323040 76740329 76741058 298238 297509 NC_000014.9 scf7180000172714 99.59 True fake: scaffold gap size wrong estimation (local) 76736992 76737911 301672 300753 NC_000014.9 scf7180000172714 99.57 True indel: indel (<= 5bp) 76736477 76736989 302185 301673 NC_000014.9 scf7180000172714 99.61 True fake: scaffold gap size wrong estimation (local) 76732367 76733951 305705 304121 NC_000014.9 scf7180000172714 99.43 True fake: scaffold gap size wrong estimation (local) 76729858 76731941 308207 306124 NC_000014.9 scf7180000172714 99.86 True fake: scaffold gap size wrong estimation (local) 76722596 76729658 315381 308370 NC_000014.9 scf7180000172714 98.81 True fake: scaffold gap size wrong estimation (local) 76719288 76722375 318653 315545 NC_000014.9 scf7180000172714 99.87 True fake: scaffold gap size wrong estimation (local) 76717430 76718981 320478 318927 NC_000014.9 scf7180000172714 99.81 True fake: scaffold gap size wrong estimation (local) 76714971 76717281 322904 320594 NC_000014.9 scf7180000172714 100.0 True fake: scaffold gap size wrong estimation (local) 76712899 76714239 324941 323601 NC_000014.9 scf7180000172714 98.51 True fake: scaffold gap size wrong estimation (local) 76709847 76712162 328089 325856 NC_000014.9 scf7180000172714 95.87 True fake: scaffold gap size wrong estimation (local) 76707588 76709209 330383 328740 NC_000014.9 scf7180000172714 99.51 True fake: scaffold gap size wrong estimation (local) 76705157 76706598 332827 331386 NC_000014.9 scf7180000172714 98.13 True local misassembly 76704186 76704797 333586 332975 NC_000014.9 scf7180000172714 99.67 True fake: not a misassembly (possible transposable element) 102344949 102345522 334160 333587 NC_000014.9 scf7180000172714 100.0 True fake: not a misassembly (possible transposable element) 76703343 76704131 334997 334209 NC_000014.9 scf7180000172714 99.75 True indel: stretch of mismatches 76693146 76703261 345233 335079 NC_000014.9 scf7180000172714 99.83 True fake: scaffold gap size wrong estimation (local) 76692381 76692946 345958 345393 NC_000014.9 scf7180000172714 95.76 True local misassembly 76691618 76692287 346628 345959 NC_000014.9 scf7180000172714 99.85 True fake: scaffold gap size wrong estimation (local) 76685912 76691346 352358 346923 NC_000014.9 scf7180000172714 99.82 True fake: not a misassembly (possible transposable element) 26750762 26751963 353587 352386 NC_000014.9 scf7180000172714 99.83 True fake: not a misassembly (possible transposable element) 76680725 76685973 358904 353754 NC_000014.9 scf7180000172714 97.69 True fake: scaffold gap size wrong estimation (local) 76678335 76679000 361238 360573 NC_000014.9 scf7180000172714 96.55 True indel: indel (> 5bp) 76677706 76678263 361796 361239 NC_000014.9 scf7180000172714 99.64 True CONTIG scf7180000172714 361871 misassembled 80737736 80738700 965 1 NC_000014.9 scf7180000172715 100.0 True fake: scaffold gap size wrong estimation (local) 80734862 80737146 3912 1628 NC_000014.9 scf7180000172715 99.96 True fake: scaffold gap size wrong estimation (local) 80723022 80734594 15595 4150 NC_000014.9 scf7180000172715 98.43 True fake: scaffold gap size wrong estimation (local) 80695682 80722822 42809 15736 NC_000014.9 scf7180000172715 99.66 True fake: scaffold gap size wrong estimation (local) 80673779 80695461 64872 42991 NC_000014.9 scf7180000172715 99.03 True fake: scaffold gap size wrong estimation (local) 80667861 80673388 70690 65165 NC_000014.9 scf7180000172715 99.86 True fake: scaffold gap size wrong estimation (local) 80657253 80667605 81248 70880 NC_000014.9 scf7180000172715 99.76 True fake: scaffold gap size wrong estimation (local) 80656292 80657118 82166 81340 NC_000014.9 scf7180000172715 97.34 True indel: indel (> 5bp) 80652515 80655895 85915 82535 NC_000014.9 scf7180000172715 99.53 True fake: scaffold gap size wrong estimation (local) 80650909 80651485 87226 86650 NC_000014.9 scf7180000172715 99.83 True fake: scaffold gap size wrong estimation (local) 80650041 80650729 88394 87706 NC_000014.9 scf7180000172715 99.85 True fake: scaffold gap size wrong estimation (local) 80646078 80649830 92261 88507 NC_000014.9 scf7180000172715 99.92 True fake: not a misassembly (possible transposable element) 72729232 72729799 92829 92262 NC_000014.9 scf7180000172715 99.83 True fake: not a misassembly (possible transposable element) 80643027 80646196 96025 92856 NC_000014.9 scf7180000172715 99.84 True fake: scaffold gap size wrong estimation (local) 80642075 80642788 96996 96283 NC_000014.9 scf7180000172715 99.72 True fake: scaffold gap size wrong estimation (local) 80637008 80641897 101982 97093 NC_000014.9 scf7180000172715 99.8 True fake: scaffold gap size wrong estimation (local) 80626487 80636860 112429 102089 NC_000014.9 scf7180000172715 99.49 True fake: scaffold gap size wrong estimation (local) 80623371 80626209 115633 112795 NC_000014.9 scf7180000172715 99.89 True fake: scaffold gap size wrong estimation (local) 80620078 80622331 118859 116606 NC_000014.9 scf7180000172715 99.91 True fake: scaffold gap size wrong estimation (local) 80617507 80619387 121422 119542 NC_000014.9 scf7180000172715 99.89 True fake: scaffold gap size wrong estimation (local) 80616547 80617101 122349 121795 NC_000014.9 scf7180000172715 99.82 True indel: indel (<= 5bp) 80615857 80616543 123036 122350 NC_000014.9 scf7180000172715 99.85 True fake: scaffold gap size wrong estimation (local) 80613490 80615695 125351 123146 NC_000014.9 scf7180000172715 98.82 True fake: scaffold gap size wrong estimation (local) 80602769 80612900 135979 125848 NC_000014.9 scf7180000172715 99.92 True fake: scaffold gap size wrong estimation (local) 80599547 80602572 139124 136101 NC_000014.9 scf7180000172715 99.9 True fake: scaffold gap size wrong estimation (local) 80595084 80599275 143816 139377 NC_000014.9 scf7180000172715 98.97 True fake: scaffold gap size wrong estimation (local) 80591345 80592148 147243 146440 NC_000014.9 scf7180000172715 99.88 True fake: scaffold gap size wrong estimation (local) 80570268 80590860 168100 147626 NC_000014.9 scf7180000172715 99.0 True indel: stretch of mismatches 80565017 80570168 173351 168200 NC_000014.9 scf7180000172715 99.79 True fake: scaffold gap size wrong estimation (local) 80563805 80564944 174638 173499 NC_000014.9 scf7180000172715 99.74 True fake: scaffold gap size wrong estimation (local) 80562149 80563535 176180 174768 NC_000014.9 scf7180000172715 99.07 True fake: scaffold gap size wrong estimation (local) 80548071 80561904 190003 176413 NC_000014.9 scf7180000172715 98.04 True fake: scaffold gap size wrong estimation (local) 80520388 80547785 217612 190231 NC_000014.9 scf7180000172715 98.39 True fake: scaffold gap size wrong estimation (local) 80517735 80520285 220331 217781 NC_000014.9 scf7180000172715 99.53 True fake: scaffold gap size wrong estimation (local) 80513299 80513848 224997 224448 NC_000014.9 scf7180000172715 99.82 True CONTIG scf7180000172715 225347 correct 88679519 88681423 1932 28 NC_000014.9 scf7180000172716 99.79 True fake: scaffold gap size wrong estimation (local) 88677326 88678622 4113 2817 NC_000014.9 scf7180000172716 99.92 True fake: scaffold gap size wrong estimation (local) 88676338 88677183 5142 4297 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88670994 88675910 10422 5479 NC_000014.9 scf7180000172716 99.49 True fake: scaffold gap size wrong estimation (local) 88666321 88670217 14987 11091 NC_000014.9 scf7180000172716 99.92 True fake: not a misassembly (possible transposable element) 31200544 31201514 15018 15988 NC_000014.9 scf7180000172716 100.0 True fake: not a misassembly (possible transposable element) 88662564 88665921 19421 15989 NC_000014.9 scf7180000172716 98.24 True fake: scaffold gap size wrong estimation (local) 88660738 88662297 21137 19578 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88659478 88660286 22629 21821 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88656540 88659335 25524 22729 NC_000014.9 scf7180000172716 98.0 True fake: scaffold gap size wrong estimation (local) 88654348 88655623 27627 26343 NC_000014.9 scf7180000172716 99.37 True fake: scaffold gap size wrong estimation (local) 88653477 88654112 28384 27749 NC_000014.9 scf7180000172716 99.84 True fake: scaffold gap size wrong estimation (local) 88645025 88653240 36904 28592 NC_000014.9 scf7180000172716 99.35 True fake: scaffold gap size wrong estimation (local) 88636562 88644776 45301 37087 NC_000014.9 scf7180000172716 99.93 True fake: scaffold gap size wrong estimation (local) 88631748 88636406 50057 45399 NC_000014.9 scf7180000172716 99.94 True fake: scaffold gap size wrong estimation (local) 88630311 88631569 51460 50202 NC_000014.9 scf7180000172716 99.84 True fake: scaffold gap size wrong estimation (local) 88624249 88630007 57452 51694 NC_000014.9 scf7180000172716 99.95 True fake: scaffold gap size wrong estimation (local) 88619946 88623132 61614 58421 NC_000014.9 scf7180000172716 99.81 True fake: scaffold gap size wrong estimation (local) 88593217 88619745 88152 61779 NC_000014.9 scf7180000172716 97.49 True fake: scaffold gap size wrong estimation (local) 88586114 88592683 95287 88660 NC_000014.9 scf7180000172716 99.44 True fake: scaffold gap size wrong estimation (local) 88577795 88585394 103614 95977 NC_000014.9 scf7180000172716 99.75 True fake: scaffold gap size wrong estimation (local) 88573402 88577627 107965 103762 NC_000014.9 scf7180000172716 99.35 True fake: scaffold gap size wrong estimation (local) 88571894 88573149 109452 108197 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88567435 88571707 113863 109591 NC_000014.9 scf7180000172716 99.84 True fake: scaffold gap size wrong estimation (local) 88566041 88566683 115214 114572 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88565357 88565889 115984 115452 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88558613 88565250 122533 116023 NC_000014.9 scf7180000172716 97.58 True fake: scaffold gap size wrong estimation (local) 88546595 88557919 134451 123170 NC_000014.9 scf7180000172716 99.27 True fake: scaffold gap size wrong estimation (local) 88544281 88545759 136765 135299 NC_000014.9 scf7180000172716 99.11 True fake: scaffold gap size wrong estimation (local) 88539266 88544080 141756 136940 NC_000014.9 scf7180000172716 99.92 True fake: scaffold gap size wrong estimation (local) 88531461 88539122 149559 141898 NC_000014.9 scf7180000172716 99.91 True fake: scaffold gap size wrong estimation (local) 88526570 88530896 154505 150148 NC_000014.9 scf7180000172716 99.38 True fake: scaffold gap size wrong estimation (local) 88518698 88526320 162186 154629 NC_000014.9 scf7180000172716 99.0 True fake: scaffold gap size wrong estimation (local) 88514630 88518217 166202 162572 NC_000014.9 scf7180000172716 99.25 True fake: scaffold gap size wrong estimation (local) 88506961 88514489 174158 166323 NC_000014.9 scf7180000172716 95.82 True fake: scaffold gap size wrong estimation (local) 88498033 88506758 183077 174327 NC_000014.9 scf7180000172716 99.68 True local misassembly 88495558 88497490 185086 183154 NC_000014.9 scf7180000172716 99.95 True fake: scaffold gap size wrong estimation (local) 88486995 88494759 193544 185836 NC_000014.9 scf7180000172716 99.16 True fake: scaffold gap size wrong estimation (local) 88483219 88486873 197336 193672 NC_000014.9 scf7180000172716 99.95 True fake: scaffold gap size wrong estimation (local) 88465400 88483014 215115 197499 NC_000014.9 scf7180000172716 99.91 True indel: indel (<= 5bp) 88464039 88465300 216466 215213 NC_000014.9 scf7180000172716 99.19 True fake: scaffold gap size wrong estimation (local) 88461771 88463940 218739 216570 NC_000014.9 scf7180000172716 100.0 True fake: not a misassembly (possible transposable element) 31813210 31813876 219766 219104 NC_000014.9 scf7180000172716 99.25 True fake: not a misassembly (possible transposable element) 88459985 88460917 220767 219838 NC_000014.9 scf7180000172716 97.21 True fake: scaffold gap size wrong estimation (local) 88453499 88455762 228841 226578 NC_000014.9 scf7180000172716 99.96 True indel: indel (<= 5bp) 88451713 88453497 230626 228842 NC_000014.9 scf7180000172716 99.1 True fake: scaffold gap size wrong estimation (local) 88449656 88451421 233147 231382 NC_000014.9 scf7180000172716 100.0 True fake: scaffold gap size wrong estimation (local) 88441343 88442958 241330 239683 NC_000014.9 scf7180000172716 98.43 True fake: scaffold gap size wrong estimation (local) 88434699 88441116 248022 241605 NC_000014.9 scf7180000172716 99.97 True fake: scaffold gap size wrong estimation (local) 88421948 88434508 260592 248232 NC_000014.9 scf7180000172716 98.24 True fake: scaffold gap size wrong estimation (local) 88419746 88420871 262789 261664 NC_000014.9 scf7180000172716 98.22 True local misassembly 88418599 88419617 263808 262790 NC_000014.9 scf7180000172716 99.8 True fake: scaffold gap size wrong estimation (local) 88417306 88418598 265247 263955 NC_000014.9 scf7180000172716 99.92 True indel: indel (<= 5bp) 88416428 88417196 266123 265355 NC_000014.9 scf7180000172716 99.87 True fake: scaffold gap size wrong estimation (local) 88413688 88415526 268757 266919 NC_000014.9 scf7180000172716 99.89 True fake: scaffold gap size wrong estimation (local) 88411330 88413342 271090 269078 NC_000014.9 scf7180000172716 99.85 True fake: scaffold gap size wrong estimation (local) 88408868 88409797 273641 272712 NC_000014.9 scf7180000172716 99.78 True fake: scaffold gap size wrong estimation (local) 88403167 88406666 279318 275726 NC_000014.9 scf7180000172716 99.74 True fake: scaffold gap size wrong estimation (local) 88401854 88402434 280618 280038 NC_000014.9 scf7180000172716 100.0 True CONTIG scf7180000172716 280618 correct 87372127 87373322 1 1196 NC_000014.9 scf7180000172717 99.75 True fake: scaffold gap size wrong estimation (local) 87373524 87374383 1296 2155 NC_000014.9 scf7180000172717 99.88 True fake: scaffold gap size wrong estimation (local) 87374613 87403569 2370 31199 NC_000014.9 scf7180000172717 97.73 True fake: scaffold gap size wrong estimation (local) 87404299 87414009 31769 41478 NC_000014.9 scf7180000172717 99.89 True relocation, scaffold gap is present, inconsistency = -20350003 67066532 67067674 44004 45146 NC_000014.9 scf7180000172717 99.83 True relocation, scaffold gap is present, inconsistency = -42479520 24588175 24589405 45167 46397 NC_000014.9 scf7180000172717 99.92 True fake: scaffold gap size wrong estimation (local) 24590340 24591172 46418 47250 NC_000014.9 scf7180000172717 100.0 True relocation, scaffold gap is present, inconsistency = 42477653 67068846 67070471 47271 48896 NC_000014.9 scf7180000172717 99.75 True relocation, scaffold gap is present, inconsistency = 27483148 94553781 94554368 49058 49645 NC_000014.9 scf7180000172717 97.62 True relocation, scaffold gap is present, inconsistency = -7135378 87419214 87423392 49869 54047 NC_000014.9 scf7180000172717 99.71 True relocation, scaffold gap is present, inconsistency = -62833959 24589454 24590423 54068 55037 NC_000014.9 scf7180000172717 100.0 True fake: scaffold gap size wrong estimation (local) 24593301 24594261 55058 56039 NC_000014.9 scf7180000172717 99.48 True indel: stretch of mismatches 24594425 24597238 56203 59165 NC_000014.9 scf7180000172717 95.24 True fake: scaffold gap size wrong estimation (local) 24597390 24598777 59526 60913 NC_000014.9 scf7180000172717 99.86 True relocation, scaffold gap is present, inconsistency = 62830405 87429274 87448140 61005 79897 NC_000014.9 scf7180000172717 99.21 True fake: scaffold gap size wrong estimation (local) 87448412 87451702 80104 83394 NC_000014.9 scf7180000172717 99.97 True fake: scaffold gap size wrong estimation (local) 87451916 87455807 83525 87416 NC_000014.9 scf7180000172717 99.92 True fake: scaffold gap size wrong estimation (local) 87455992 87476770 87544 108405 NC_000014.9 scf7180000172717 99.66 True fake: scaffold gap size wrong estimation (local) 87477690 87480561 109763 112634 NC_000014.9 scf7180000172717 99.97 True fake: scaffold gap size wrong estimation (local) 87480690 87499658 112727 131586 NC_000014.9 scf7180000172717 99.4 True fake: scaffold gap size wrong estimation (local) 87499903 87517372 131768 149130 NC_000014.9 scf7180000172717 99.23 True fake: scaffold gap size wrong estimation (local) 87517516 87533753 149239 165555 NC_000014.9 scf7180000172717 99.27 True fake: scaffold gap size wrong estimation (local) 87533935 87549858 165726 181644 NC_000014.9 scf7180000172717 99.45 True fake: scaffold gap size wrong estimation (local) 87549979 87571636 181744 203351 NC_000014.9 scf7180000172717 99.26 True fake: scaffold gap size wrong estimation (local) 87571824 87581824 203468 213513 NC_000014.9 scf7180000172717 99.7 True fake: scaffold gap size wrong estimation (local) 87582128 87598424 213691 229742 NC_000014.9 scf7180000172717 98.33 True fake: scaffold gap size wrong estimation (local) 87598587 87606919 229822 238154 NC_000014.9 scf7180000172717 99.95 True fake: scaffold gap size wrong estimation (local) 87607254 87611153 238405 242321 NC_000014.9 scf7180000172717 99.92 True fake: scaffold gap size wrong estimation (local) 87611353 87625323 242449 256462 NC_000014.9 scf7180000172717 99.61 True fake: scaffold gap size wrong estimation (local) 87625478 87656957 256717 289333 NC_000014.9 scf7180000172717 96.06 True CONTIG scf7180000172717 289333 misassembled 77959968 77960606 22 660 NC_000014.9 scf7180000172718 99.84 True fake: scaffold gap size wrong estimation (local) 77962248 77966688 2197 6603 NC_000014.9 scf7180000172718 99.03 True fake: scaffold gap size wrong estimation (local) 77966780 77968394 6667 8282 NC_000014.9 scf7180000172718 99.81 True fake: scaffold gap size wrong estimation (local) 77968468 77971083 8547 11162 NC_000014.9 scf7180000172718 99.96 True fake: scaffold gap size wrong estimation (local) 77971661 77992227 11712 32311 NC_000014.9 scf7180000172718 99.79 True fake: scaffold gap size wrong estimation (local) 77994404 77994970 34352 34912 NC_000014.9 scf7180000172718 98.59 True fake: scaffold gap size wrong estimation (local) 77995524 77999906 35561 39931 NC_000014.9 scf7180000172718 99.63 True fake: scaffold gap size wrong estimation (local) 78000170 78001477 40186 41493 NC_000014.9 scf7180000172718 99.39 True indel: indel (<= 5bp) 78001612 78002118 41631 42137 NC_000014.9 scf7180000172718 99.41 True fake: scaffold gap size wrong estimation (local) 78002486 78007776 42351 47654 NC_000014.9 scf7180000172718 99.87 True fake: scaffold gap size wrong estimation (local) 78007985 78008862 47852 48729 NC_000014.9 scf7180000172718 100.0 True fake: scaffold gap size wrong estimation (local) 78009424 78013178 49261 53015 NC_000014.9 scf7180000172718 99.89 True fake: scaffold gap size wrong estimation (local) 78013497 78017496 53496 57364 NC_000014.9 scf7180000172718 96.38 True fake: scaffold gap size wrong estimation (local) 78018284 78021352 58887 61955 NC_000014.9 scf7180000172718 99.8 True fake: scaffold gap size wrong estimation (local) 78021493 78031482 62079 72029 NC_000014.9 scf7180000172718 99.37 True fake: scaffold gap size wrong estimation (local) 78031808 78034764 72207 75256 NC_000014.9 scf7180000172718 99.76 True fake: scaffold gap size wrong estimation (local) 78035053 78038540 75470 78987 NC_000014.9 scf7180000172718 99.51 True fake: scaffold gap size wrong estimation (local) 78038626 78044982 79104 85459 NC_000014.9 scf7180000172718 99.81 True fake: scaffold gap size wrong estimation (local) 78045551 78048794 85972 89215 NC_000014.9 scf7180000172718 99.82 True fake: scaffold gap size wrong estimation (local) 78049122 78050857 89521 91256 NC_000014.9 scf7180000172718 99.88 True fake: scaffold gap size wrong estimation (local) 78054401 78055042 95138 95779 NC_000014.9 scf7180000172718 100.0 True fake: scaffold gap size wrong estimation (local) 78057064 78057839 97657 98436 NC_000014.9 scf7180000172718 99.49 True fake: scaffold gap size wrong estimation (local) 78058014 78068239 98847 109093 NC_000014.9 scf7180000172718 99.88 True fake: not a misassembly (possible transposable element) 73049467 73050114 109741 109094 NC_000014.9 scf7180000172718 99.86 True fake: not a misassembly (possible transposable element) 78068327 78072344 109762 113779 NC_000014.9 scf7180000172718 99.85 True fake: scaffold gap size wrong estimation (local) 78072345 78073551 114198 115404 NC_000014.9 scf7180000172718 98.51 True fake: scaffold gap size wrong estimation (local) 78073999 78080309 115787 122088 NC_000014.9 scf7180000172718 99.56 True fake: scaffold gap size wrong estimation (local) 78080718 78087303 122467 128992 NC_000014.9 scf7180000172718 99.01 True fake: scaffold gap size wrong estimation (local) 78087479 78093212 129112 134845 NC_000014.9 scf7180000172718 99.81 True fake: scaffold gap size wrong estimation (local) 78093364 78094317 134895 135848 NC_000014.9 scf7180000172718 100.0 True fake: scaffold gap size wrong estimation (local) 78094402 78110067 135958 151607 NC_000014.9 scf7180000172718 99.65 True fake: scaffold gap size wrong estimation (local) 78110498 78113135 152002 154639 NC_000014.9 scf7180000172718 99.89 True fake: scaffold gap size wrong estimation (local) 78113359 78114435 154895 155971 NC_000014.9 scf7180000172718 99.81 True local misassembly 78114564 78115912 155972 157320 NC_000014.9 scf7180000172718 95.33 True fake: scaffold gap size wrong estimation (local) 78116112 78117751 157531 159170 NC_000014.9 scf7180000172718 99.82 True fake: scaffold gap size wrong estimation (local) 78117923 78119014 159240 160394 NC_000014.9 scf7180000172718 99.91 True fake: scaffold gap size wrong estimation (local) 78119225 78129433 160569 170762 NC_000014.9 scf7180000172718 98.24 True fake: not a misassembly (possible transposable element) 42340776 42341527 170763 171514 NC_000014.9 scf7180000172718 100.0 True fake: not a misassembly (possible transposable element) 78129359 78133226 171535 175402 NC_000014.9 scf7180000172718 99.92 True fake: scaffold gap size wrong estimation (local) 78133486 78159547 175442 201707 NC_000014.9 scf7180000172718 99.28 True fake: scaffold gap size wrong estimation (local) 78159762 78190639 201869 232861 NC_000014.9 scf7180000172718 99.86 True fake: scaffold gap size wrong estimation (local) 78190865 78206915 233070 249131 NC_000014.9 scf7180000172718 99.76 True fake: scaffold gap size wrong estimation (local) 78207084 78224335 249271 267287 NC_000014.9 scf7180000172718 95.79 True relocation, scaffold gap is present, inconsistency = 5155914 73046991 73048417 271466 270040 NC_000014.9 scf7180000172718 100.0 True fake: scaffold gap size wrong estimation (local) 73044443 73045595 273738 272568 NC_000014.9 scf7180000172718 99.57 True fake: scaffold gap size wrong estimation (local) 73040471 73041831 278547 277187 NC_000014.9 scf7180000172718 98.31 True local misassembly 73039336 73040321 279533 278548 NC_000014.9 scf7180000172718 100.0 True fake: scaffold gap size wrong estimation (local) 73035210 73035907 284681 283986 NC_000014.9 scf7180000172718 99.43 True CONTIG scf7180000172718 284688 misassembled 38269206 38274575 2606 7969 NC_000014.9 scf7180000172719 99.72 True fake: scaffold gap size wrong estimation (local) 38275833 38281770 9148 14966 NC_000014.9 scf7180000172719 97.56 True fake: scaffold gap size wrong estimation (local) 38281855 38285674 15067 18883 NC_000014.9 scf7180000172719 99.82 True fake: scaffold gap size wrong estimation (local) 38285862 38287517 18983 20638 NC_000014.9 scf7180000172719 99.76 True fake: scaffold gap size wrong estimation (local) 38287670 38294112 20785 27234 NC_000014.9 scf7180000172719 99.84 True fake: scaffold gap size wrong estimation (local) 38294369 38299251 27341 32240 NC_000014.9 scf7180000172719 98.87 True fake: scaffold gap size wrong estimation (local) 38299439 38303844 32414 36819 NC_000014.9 scf7180000172719 99.82 True relocation, scaffold gap is present, inconsistency = 7959153 46264005 46264562 38384 37827 NC_000014.9 scf7180000172719 99.64 True fake: scaffold gap size wrong estimation (local) 46249623 46263940 52721 38430 NC_000014.9 scf7180000172719 99.61 True fake: scaffold gap size wrong estimation (local) 46238514 46249407 64049 53184 NC_000014.9 scf7180000172719 99.66 True fake: scaffold gap size wrong estimation (local) 46232873 46237932 69711 64628 NC_000014.9 scf7180000172719 99.94 True fake: scaffold gap size wrong estimation (local) 46227901 46231100 74533 71204 NC_000014.9 scf7180000172719 99.87 True fake: scaffold gap size wrong estimation (local) 46224324 46226412 77903 75818 NC_000014.9 scf7180000172719 99.71 True fake: scaffold gap size wrong estimation (local) 46207918 46224062 94657 78198 NC_000014.9 scf7180000172719 98.11 True fake: scaffold gap size wrong estimation (local) 46205413 46206575 97021 95859 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 46203677 46205028 99126 97775 NC_000014.9 scf7180000172719 99.85 True relocation, scaffold gap is present, inconsistency = -42198185 88399032 88401841 101820 99147 NC_000014.9 scf7180000172719 95.16 True fake: scaffold gap size wrong estimation (local) 88379595 88397657 121070 103177 NC_000014.9 scf7180000172719 99.01 True fake: scaffold gap size wrong estimation (local) 88378125 88379264 122550 121411 NC_000014.9 scf7180000172719 99.56 True fake: scaffold gap size wrong estimation (local) 88377566 88378124 123125 122567 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88376096 88376965 124637 123768 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88372383 88373803 128452 127032 NC_000014.9 scf7180000172719 98.59 True local misassembly 88371609 88372266 129110 128453 NC_000014.9 scf7180000172719 99.86 True fake: not a misassembly (possible transposable element) 44693582 44694634 130163 129111 NC_000014.9 scf7180000172719 99.62 True fake: not a misassembly (possible transposable element) 88355997 88371349 146313 130184 NC_000014.9 scf7180000172719 95.14 True fake: scaffold gap size wrong estimation (local) 88354185 88355585 148112 146712 NC_000014.9 scf7180000172719 99.29 True fake: scaffold gap size wrong estimation (local) 88349441 88354184 152881 148138 NC_000014.9 scf7180000172719 99.37 True indel: indel (> 5bp) 88347166 88349410 155126 152882 NC_000014.9 scf7180000172719 99.96 True fake: scaffold gap size wrong estimation (local) 88344843 88347165 157488 155166 NC_000014.9 scf7180000172719 99.96 True fake: scaffold gap size wrong estimation (local) 88344290 88344842 158889 158337 NC_000014.9 scf7180000172719 96.38 True fake: scaffold gap size wrong estimation (local) 88341850 88343578 161271 159543 NC_000014.9 scf7180000172719 99.19 True fake: scaffold gap size wrong estimation (local) 88340614 88341602 162540 161552 NC_000014.9 scf7180000172719 100.0 True local misassembly 88338982 88340512 164071 162541 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88302626 88338787 200395 164192 NC_000014.9 scf7180000172719 99.32 True fake: scaffold gap size wrong estimation (local) 88295585 88302469 207438 200553 NC_000014.9 scf7180000172719 99.9 True fake: scaffold gap size wrong estimation (local) 88267613 88295426 235275 207615 NC_000014.9 scf7180000172719 99.2 True fake: scaffold gap size wrong estimation (local) 88258479 88267384 244394 235462 NC_000014.9 scf7180000172719 99.89 True fake: scaffold gap size wrong estimation (local) 88255678 88258312 247365 244731 NC_000014.9 scf7180000172719 99.96 True fake: scaffold gap size wrong estimation (local) 88253975 88255532 249035 247478 NC_000014.9 scf7180000172719 99.94 True fake: scaffold gap size wrong estimation (local) 88251245 88253825 251712 249132 NC_000014.9 scf7180000172719 99.92 True fake: scaffold gap size wrong estimation (local) 88246288 88251005 256592 251875 NC_000014.9 scf7180000172719 99.94 True fake: scaffold gap size wrong estimation (local) 88244646 88246154 258221 256713 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88239898 88244543 262977 258337 NC_000014.9 scf7180000172719 99.81 True fake: scaffold gap size wrong estimation (local) 88231118 88239626 271668 263136 NC_000014.9 scf7180000172719 99.8 True fake: scaffold gap size wrong estimation (local) 88221303 88230266 281641 272419 NC_000014.9 scf7180000172719 97.16 True fake: scaffold gap size wrong estimation (local) 88220450 88221088 282516 281878 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88214194 88220164 288741 282695 NC_000014.9 scf7180000172719 99.76 True fake: scaffold gap size wrong estimation (local) 88212423 88213949 290426 288900 NC_000014.9 scf7180000172719 100.0 True fake: scaffold gap size wrong estimation (local) 88207437 88211764 295483 291131 NC_000014.9 scf7180000172719 99.84 True indel: indel (<= 5bp) 88205738 88207288 297186 295630 NC_000014.9 scf7180000172719 99.61 True fake: scaffold gap size wrong estimation (local) 88178921 88205541 323745 297280 NC_000014.9 scf7180000172719 99.27 True fake: scaffold gap size wrong estimation (local) 88131724 88178777 371313 323863 NC_000014.9 scf7180000172719 99.11 True fake: scaffold gap size wrong estimation (local) 88128114 88131271 374833 371676 NC_000014.9 scf7180000172719 100.0 True relocation, scaffold gap is present, inconsistency = -4105997 92233295 92234054 375649 374890 NC_000014.9 scf7180000172719 99.61 True local misassembly 92233580 92234457 378232 377355 NC_000014.9 scf7180000172719 99.89 True CONTIG scf7180000172719 378232 misassembled 102578830 102579566 1 737 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102581347 102581940 2668 3261 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102582850 102595660 4257 17113 NC_000014.9 scf7180000172720 97.64 True fake: scaffold gap size wrong estimation (local) 102595751 102596602 17306 18157 NC_000014.9 scf7180000172720 99.65 True fake: scaffold gap size wrong estimation (local) 102598596 102599807 20047 21258 NC_000014.9 scf7180000172720 99.34 True fake: scaffold gap size wrong estimation (local) 102601088 102601932 22554 23398 NC_000014.9 scf7180000172720 99.76 True fake: scaffold gap size wrong estimation (local) 102602415 102606212 23769 27408 NC_000014.9 scf7180000172720 95.66 True fake: scaffold gap size wrong estimation (local) 102607015 102607672 28489 29146 NC_000014.9 scf7180000172720 99.54 True fake: scaffold gap size wrong estimation (local) 102609224 102609885 31365 32026 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102611161 102612428 32161 33428 NC_000014.9 scf7180000172720 99.61 True fake: scaffold gap size wrong estimation (local) 102615626 102616206 34232 34812 NC_000014.9 scf7180000172720 96.21 True indel: indel (> 5bp) 102616231 102617591 34813 36173 NC_000014.9 scf7180000172720 99.78 True fake: scaffold gap size wrong estimation (local) 102617987 102620315 36610 38948 NC_000014.9 scf7180000172720 98.71 True fake: scaffold gap size wrong estimation (local) 102620628 102621167 39248 39787 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102621394 102623405 39989 41996 NC_000014.9 scf7180000172720 99.6 True fake: scaffold gap size wrong estimation (local) 102624091 102625238 42624 43771 NC_000014.9 scf7180000172720 99.56 True fake: scaffold gap size wrong estimation (local) 102625552 102627503 44095 46046 NC_000014.9 scf7180000172720 99.9 True fake: scaffold gap size wrong estimation (local) 102627961 102628775 46373 47187 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102628894 102629442 47932 48480 NC_000014.9 scf7180000172720 99.64 True indel: indel (<= 5bp) 102629444 102631317 48481 50354 NC_000014.9 scf7180000172720 99.84 True fake: scaffold gap size wrong estimation (local) 102631465 102631985 50495 51015 NC_000014.9 scf7180000172720 99.81 True fake: scaffold gap size wrong estimation (local) 102632818 102634804 51697 53865 NC_000014.9 scf7180000172720 99.79 True fake: scaffold gap size wrong estimation (local) 102635386 102636100 54357 55071 NC_000014.9 scf7180000172720 97.2 True fake: scaffold gap size wrong estimation (local) 102637305 102638572 56503 57770 NC_000014.9 scf7180000172720 99.84 True fake: scaffold gap size wrong estimation (local) 102639898 102640994 59112 60208 NC_000014.9 scf7180000172720 99.64 True fake: scaffold gap size wrong estimation (local) 102641375 102643065 60448 62142 NC_000014.9 scf7180000172720 99.65 True fake: scaffold gap size wrong estimation (local) 102643264 102649944 62307 68972 NC_000014.9 scf7180000172720 99.73 True fake: scaffold gap size wrong estimation (local) 102650213 102651349 69158 70294 NC_000014.9 scf7180000172720 99.82 True fake: scaffold gap size wrong estimation (local) 102651755 102653962 70786 72993 NC_000014.9 scf7180000172720 99.91 True fake: scaffold gap size wrong estimation (local) 102654228 102654787 73282 73841 NC_000014.9 scf7180000172720 99.82 True fake: scaffold gap size wrong estimation (local) 102655120 102655751 74183 74814 NC_000014.9 scf7180000172720 97.63 True fake: scaffold gap size wrong estimation (local) 102656514 102657611 75580 76677 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102658123 102670068 77162 89062 NC_000014.9 scf7180000172720 98.37 True fake: scaffold gap size wrong estimation (local) 102670152 102670768 89172 89788 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102670991 102672338 89983 91330 NC_000014.9 scf7180000172720 99.78 True local misassembly 102672461 102673353 91331 92223 NC_000014.9 scf7180000172720 97.31 True fake: scaffold gap size wrong estimation (local) 102673757 102674815 92655 93713 NC_000014.9 scf7180000172720 99.91 True fake: scaffold gap size wrong estimation (local) 102675069 102676041 93953 94925 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102678131 102679504 96870 98201 NC_000014.9 scf7180000172720 96.9 True fake: scaffold gap size wrong estimation (local) 102679752 102688041 98675 106823 NC_000014.9 scf7180000172720 97.95 True fake: scaffold gap size wrong estimation (local) 102688184 102692736 106990 111602 NC_000014.9 scf7180000172720 95.41 True fake: scaffold gap size wrong estimation (local) 102692977 102694292 111844 113159 NC_000014.9 scf7180000172720 100.0 True local misassembly 102694465 102695400 113160 114095 NC_000014.9 scf7180000172720 97.86 True fake: scaffold gap size wrong estimation (local) 102695400 102700256 114311 119106 NC_000014.9 scf7180000172720 97.45 True fake: scaffold gap size wrong estimation (local) 102700405 102704467 119185 123342 NC_000014.9 scf7180000172720 98.16 True fake: scaffold gap size wrong estimation (local) 102704649 102707831 123456 126666 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102708228 102713280 126999 132116 NC_000014.9 scf7180000172720 99.86 True fake: scaffold gap size wrong estimation (local) 102713557 102715093 132307 133843 NC_000014.9 scf7180000172720 100.0 True indel: indel (<= 5bp) 102715354 102719342 134109 138097 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102719537 102725827 138260 144550 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102726108 102732667 145005 151564 NC_000014.9 scf7180000172720 99.98 True fake: scaffold gap size wrong estimation (local) 102732856 102736594 151786 155379 NC_000014.9 scf7180000172720 95.9 True fake: scaffold gap size wrong estimation (local) 102736787 102741284 155532 160145 NC_000014.9 scf7180000172720 97.69 True fake: scaffold gap size wrong estimation (local) 102741977 102742531 160708 161262 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102742691 102743287 161520 162116 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102745977 102748170 164642 166835 NC_000014.9 scf7180000172720 99.86 True fake: scaffold gap size wrong estimation (local) 102748708 102756999 167400 175691 NC_000014.9 scf7180000172720 99.92 True fake: scaffold gap size wrong estimation (local) 102757231 102758470 175845 177084 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102759176 102761713 177806 180343 NC_000014.9 scf7180000172720 100.0 True fake: scaffold gap size wrong estimation (local) 102761963 102762715 180516 181267 NC_000014.9 scf7180000172720 99.87 True fake: scaffold gap size wrong estimation (local) 102763941 102764982 182571 183612 NC_000014.9 scf7180000172720 97.98 True fake: scaffold gap size wrong estimation (local) 102765853 102769678 184345 188195 NC_000014.9 scf7180000172720 99.21 True fake: scaffold gap size wrong estimation (local) 102769808 102772570 188216 190993 NC_000014.9 scf7180000172720 95.31 True CONTIG scf7180000172720 192311 correct 92046104 92046832 1 729 NC_000014.9 scf7180000172721 99.31 True relocation, scaffold gap is present, inconsistency = 10195213 102242623 102243813 2497 1307 NC_000014.9 scf7180000172721 99.16 True fake: scaffold gap size wrong estimation (local) 102241951 102242525 3506 2932 NC_000014.9 scf7180000172721 99.13 True indel: indel (<= 5bp) 102240206 102241745 5255 3713 NC_000014.9 scf7180000172721 99.42 True fake: scaffold gap size wrong estimation (local) 102228530 102239675 16982 5765 NC_000014.9 scf7180000172721 99.63 True fake: scaffold gap size wrong estimation (local) 102225270 102228441 20174 17003 NC_000014.9 scf7180000172721 100.0 True indel: indel (<= 5bp) 102224312 102225233 21133 20212 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102216859 102224055 28514 21303 NC_000014.9 scf7180000172721 99.83 True fake: scaffold gap size wrong estimation (local) 102202609 102216708 42722 28607 NC_000014.9 scf7180000172721 99.86 True fake: scaffold gap size wrong estimation (local) 102192445 102202378 52951 42934 NC_000014.9 scf7180000172721 98.69 True fake: scaffold gap size wrong estimation (local) 102190977 102192197 54340 53120 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102186907 102190329 58468 55049 NC_000014.9 scf7180000172721 99.91 True fake: scaffold gap size wrong estimation (local) 102177011 102186705 68330 58749 NC_000014.9 scf7180000172721 97.77 True fake: scaffold gap size wrong estimation (local) 102174610 102176149 70834 69295 NC_000014.9 scf7180000172721 99.74 True fake: scaffold gap size wrong estimation (local) 102171272 102171915 73834 73191 NC_000014.9 scf7180000172721 99.84 True fake: scaffold gap size wrong estimation (local) 102165768 102171089 79339 74005 NC_000014.9 scf7180000172721 99.81 True fake: scaffold gap size wrong estimation (local) 102163471 102165630 81644 79469 NC_000014.9 scf7180000172721 99.58 True fake: scaffold gap size wrong estimation (local) 102161232 102163365 83873 81740 NC_000014.9 scf7180000172721 99.95 True fake: scaffold gap size wrong estimation (local) 102158436 102160701 86605 84340 NC_000014.9 scf7180000172721 99.87 True fake: scaffold gap size wrong estimation (local) 102156438 102158349 88681 86770 NC_000014.9 scf7180000172721 99.95 True fake: scaffold gap size wrong estimation (local) 102153617 102156251 91431 88793 NC_000014.9 scf7180000172721 99.89 True fake: scaffold gap size wrong estimation (local) 102149964 102153321 95309 91882 NC_000014.9 scf7180000172721 99.32 True fake: scaffold gap size wrong estimation (local) 102149086 102149785 96134 95435 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102147305 102147883 97916 97338 NC_000014.9 scf7180000172721 96.55 True indel: indel (> 5bp) 102146295 102147281 98903 97917 NC_000014.9 scf7180000172721 99.09 True local misassembly 102145779 102146294 99652 99137 NC_000014.9 scf7180000172721 97.67 True indel: indel (<= 5bp) 102144467 102145775 100961 99653 NC_000014.9 scf7180000172721 99.77 True fake: scaffold gap size wrong estimation (local) 102138227 102143568 107081 101723 NC_000014.9 scf7180000172721 99.81 True fake: scaffold gap size wrong estimation (local) 102130194 102132726 113232 110571 NC_000014.9 scf7180000172721 95.57 True fake: scaffold gap size wrong estimation (local) 102128646 102129150 114569 114065 NC_000014.9 scf7180000172721 99.8 True fake: scaffold gap size wrong estimation (local) 102126785 102128375 116613 115024 NC_000014.9 scf7180000172721 99.81 True indel: indel (<= 5bp) 102124355 102126577 119042 116820 NC_000014.9 scf7180000172721 99.91 True fake: scaffold gap size wrong estimation (local) 102116101 102122810 127510 120964 NC_000014.9 scf7180000172721 95.97 True fake: scaffold gap size wrong estimation (local) 102115295 102115954 128434 127775 NC_000014.9 scf7180000172721 99.55 True fake: scaffold gap size wrong estimation (local) 102113978 102114872 129546 128652 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102110990 102113480 132642 130242 NC_000014.9 scf7180000172721 96.24 True fake: scaffold gap size wrong estimation (local) 102108806 102109780 134835 133861 NC_000014.9 scf7180000172721 99.9 True fake: scaffold gap size wrong estimation (local) 102106734 102107395 137319 136658 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102105231 102105870 138625 137986 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102100654 102103016 143100 140738 NC_000014.9 scf7180000172721 99.92 True fake: scaffold gap size wrong estimation (local) 102098680 102100423 145035 143264 NC_000014.9 scf7180000172721 99.83 True fake: scaffold gap size wrong estimation (local) 102097323 102098253 146292 145362 NC_000014.9 scf7180000172721 99.79 True fake: scaffold gap size wrong estimation (local) 102093480 102097044 150218 146630 NC_000014.9 scf7180000172721 99.8 True fake: scaffold gap size wrong estimation (local) 102089195 102093200 154450 150423 NC_000014.9 scf7180000172721 99.75 True fake: scaffold gap size wrong estimation (local) 102078235 102088911 165493 154712 NC_000014.9 scf7180000172721 97.72 True fake: scaffold gap size wrong estimation (local) 102076790 102077702 166987 166075 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102074250 102075554 169544 168077 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102071211 102072327 172867 171751 NC_000014.9 scf7180000172721 99.64 True fake: scaffold gap size wrong estimation (local) 102068853 102070317 175171 173709 NC_000014.9 scf7180000172721 99.79 True fake: scaffold gap size wrong estimation (local) 102068246 102068769 175777 175254 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102065517 102067220 178562 176859 NC_000014.9 scf7180000172721 99.65 True fake: scaffold gap size wrong estimation (local) 102063117 102064387 180961 179691 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102061867 102062517 182259 181609 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102059756 102060738 184292 183310 NC_000014.9 scf7180000172721 99.8 True fake: scaffold gap size wrong estimation (local) 102058710 102059314 185199 184595 NC_000014.9 scf7180000172721 100.0 True fake: scaffold gap size wrong estimation (local) 102057720 102058602 186318 185436 NC_000014.9 scf7180000172721 99.89 True indel: indel (> 5bp) 102056683 102057712 187348 186319 NC_000014.9 scf7180000172721 99.71 True fake: scaffold gap size wrong estimation (local) 102054811 102056637 189428 187602 NC_000014.9 scf7180000172721 98.85 True local misassembly 102053943 102054564 190078 189457 NC_000014.9 scf7180000172721 100.0 True relocation, scaffold gap is present, inconsistency = 744697 101308384 101309225 190940 190099 NC_000014.9 scf7180000172721 100.0 True CONTIG scf7180000172721 193151 misassembled 69821961 69824469 6358 3850 NC_000014.9 scf7180000172722 99.52 True fake: scaffold gap size wrong estimation (local) 69817958 69821604 10484 6862 NC_000014.9 scf7180000172722 99.04 True fake: scaffold gap size wrong estimation (local) 69810160 69817755 18228 10629 NC_000014.9 scf7180000172722 99.78 True fake: scaffold gap size wrong estimation (local) 69791554 69809848 37009 18507 NC_000014.9 scf7180000172722 97.91 True fake: scaffold gap size wrong estimation (local) 69788820 69791352 39688 37164 NC_000014.9 scf7180000172722 99.44 True fake: scaffold gap size wrong estimation (local) 69782828 69788498 45687 40009 NC_000014.9 scf7180000172722 99.84 True fake: scaffold gap size wrong estimation (local) 69779638 69782692 48846 45784 NC_000014.9 scf7180000172722 99.35 True fake: scaffold gap size wrong estimation (local) 69774414 69779151 53770 49203 NC_000014.9 scf7180000172722 96.28 True fake: scaffold gap size wrong estimation (local) 69772512 69774417 55884 53957 NC_000014.9 scf7180000172722 99.69 True fake: scaffold gap size wrong estimation (local) 69766414 69772400 61986 56000 NC_000014.9 scf7180000172722 99.88 True fake: scaffold gap size wrong estimation (local) 69765443 69766227 62924 62140 NC_000014.9 scf7180000172722 99.87 True fake: scaffold gap size wrong estimation (local) 69763788 69764721 64545 63612 NC_000014.9 scf7180000172722 99.89 True fake: scaffold gap size wrong estimation (local) 69761521 69763665 66722 64676 NC_000014.9 scf7180000172722 95.11 True fake: scaffold gap size wrong estimation (local) 69753851 69761381 74726 67078 NC_000014.9 scf7180000172722 99.0 True fake: scaffold gap size wrong estimation (local) 69751546 69753770 77017 74836 NC_000014.9 scf7180000172722 96.8 True fake: scaffold gap size wrong estimation (local) 69748432 69751138 80287 77574 NC_000014.9 scf7180000172722 99.7 True fake: scaffold gap size wrong estimation (local) 69744081 69745007 84871 83945 NC_000014.9 scf7180000172722 99.89 True fake: scaffold gap size wrong estimation (local) 69741374 69742339 86464 85499 NC_000014.9 scf7180000172722 99.69 True local misassembly 69742669 69743343 87159 86485 NC_000014.9 scf7180000172722 99.85 True fake: scaffold gap size wrong estimation (local) 69739309 69741000 89383 87692 NC_000014.9 scf7180000172722 99.7 True fake: scaffold gap size wrong estimation (local) 69736495 69737881 92109 90723 NC_000014.9 scf7180000172722 99.64 True fake: scaffold gap size wrong estimation (local) 69735645 69736466 93108 92287 NC_000014.9 scf7180000172722 98.91 True fake: scaffold gap size wrong estimation (local) 69732774 69735470 96135 93439 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69730636 69731697 97969 96910 NC_000014.9 scf7180000172722 99.81 True fake: scaffold gap size wrong estimation (local) 69725658 69730374 102794 98092 NC_000014.9 scf7180000172722 99.59 True fake: scaffold gap size wrong estimation (local) 69722490 69725389 105871 102972 NC_000014.9 scf7180000172722 99.86 True fake: scaffold gap size wrong estimation (local) 69721731 69722333 106954 106352 NC_000014.9 scf7180000172722 99.83 True fake: scaffold gap size wrong estimation (local) 69718827 69721606 109847 107068 NC_000014.9 scf7180000172722 99.96 True fake: scaffold gap size wrong estimation (local) 69717440 69718826 113014 111628 NC_000014.9 scf7180000172722 98.56 True indel: indel (<= 5bp) 69715801 69717434 114648 113015 NC_000014.9 scf7180000172722 98.71 True local misassembly 69713837 69715642 116454 114649 NC_000014.9 scf7180000172722 99.83 True fake: scaffold gap size wrong estimation (local) 69705159 69713836 126012 117335 NC_000014.9 scf7180000172722 99.69 True indel: indel (> 5bp) 69699284 69705124 131853 126013 NC_000014.9 scf7180000172722 99.9 True indel: indel (> 5bp) 69698247 69699277 132884 131854 NC_000014.9 scf7180000172722 98.06 True fake: scaffold gap size wrong estimation (local) 69687388 69698085 143624 132999 NC_000014.9 scf7180000172722 99.25 True fake: scaffold gap size wrong estimation (local) 69677549 69687098 153476 143762 NC_000014.9 scf7180000172722 97.87 True fake: scaffold gap size wrong estimation (local) 69669315 69677296 161712 153732 NC_000014.9 scf7180000172722 99.94 True fake: scaffold gap size wrong estimation (local) 69667640 69669074 163354 161918 NC_000014.9 scf7180000172722 99.44 True fake: scaffold gap size wrong estimation (local) 69657375 69667385 173584 163573 NC_000014.9 scf7180000172722 99.91 True indel: indel (<= 5bp) 69654943 69657248 176006 173712 NC_000014.9 scf7180000172722 99.44 True fake: scaffold gap size wrong estimation (local) 69652479 69654781 178406 176102 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69647807 69652350 183128 178585 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69646912 69647730 184032 183214 NC_000014.9 scf7180000172722 99.88 True fake: scaffold gap size wrong estimation (local) 69645987 69646706 185036 184317 NC_000014.9 scf7180000172722 96.53 True local misassembly 69644573 69645783 186247 185037 NC_000014.9 scf7180000172722 99.83 True fake: scaffold gap size wrong estimation (local) 69639339 69644392 191920 186744 NC_000014.9 scf7180000172722 98.03 True fake: scaffold gap size wrong estimation (local) 69627738 69639069 203460 192145 NC_000014.9 scf7180000172722 99.59 True fake: scaffold gap size wrong estimation (local) 69624730 69627595 206488 203614 NC_000014.9 scf7180000172722 99.93 True fake: scaffold gap size wrong estimation (local) 69622844 69624301 208340 206883 NC_000014.9 scf7180000172722 99.86 True fake: scaffold gap size wrong estimation (local) 69609748 69622661 221513 208439 NC_000014.9 scf7180000172722 98.83 True fake: scaffold gap size wrong estimation (local) 69605038 69609597 226207 221686 NC_000014.9 scf7180000172722 99.05 True fake: scaffold gap size wrong estimation (local) 69604197 69604819 227078 226456 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69602458 69604072 228928 227314 NC_000014.9 scf7180000172722 99.75 True fake: scaffold gap size wrong estimation (local) 69601465 69602198 229872 229139 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69600005 69601247 231367 230125 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69599150 69599776 232221 231595 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69598339 69598989 232981 232331 NC_000014.9 scf7180000172722 100.0 True fake: scaffold gap size wrong estimation (local) 69596534 69597289 234925 234170 NC_000014.9 scf7180000172722 99.87 True CONTIG scf7180000172722 234926 correct 105000542 105001244 1854 1136 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 104997891 105000331 4436 2083 NC_000014.9 scf7180000172723 96.08 True fake: scaffold gap size wrong estimation (local) 104991241 104997808 11155 4588 NC_000014.9 scf7180000172723 99.8 True fake: scaffold gap size wrong estimation (local) 104988560 104991100 13803 11262 NC_000014.9 scf7180000172723 99.88 True fake: scaffold gap size wrong estimation (local) 104985541 104987613 16790 14718 NC_000014.9 scf7180000172723 99.9 True fake: scaffold gap size wrong estimation (local) 104965414 104985267 36929 17048 NC_000014.9 scf7180000172723 99.92 True fake: scaffold gap size wrong estimation (local) 104963835 104965254 38492 37073 NC_000014.9 scf7180000172723 99.86 True fake: scaffold gap size wrong estimation (local) 104961412 104963574 40837 38675 NC_000014.9 scf7180000172723 99.95 True fake: scaffold gap size wrong estimation (local) 104958377 104961258 43933 40975 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 104952820 104958222 49473 44068 NC_000014.9 scf7180000172723 98.73 True indel: stretch of mismatches 104952098 104952690 50195 49603 NC_000014.9 scf7180000172723 95.62 True relocation, inconsistency = 8719 104934037 104941810 59537 51764 NC_000014.9 scf7180000172723 99.83 True fake: scaffold gap size wrong estimation (local) 104922700 104933272 71396 60793 NC_000014.9 scf7180000172723 99.76 True fake: scaffold gap size wrong estimation (local) 104920691 104921834 73328 72185 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 104918482 104920200 75745 74027 NC_000014.9 scf7180000172723 99.65 True fake: scaffold gap size wrong estimation (local) 104916062 104917654 78237 76644 NC_000014.9 scf7180000172723 99.81 True fake: scaffold gap size wrong estimation (local) 104914101 104914909 80266 79458 NC_000014.9 scf7180000172723 97.53 True local misassembly 104913337 104913958 80888 80267 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 104911832 104912547 82392 81677 NC_000014.9 scf7180000172723 99.72 True fake: scaffold gap size wrong estimation (local) 104909665 104911831 84592 82426 NC_000014.9 scf7180000172723 99.63 True fake: scaffold gap size wrong estimation (local) 104906906 104909486 87378 84798 NC_000014.9 scf7180000172723 99.88 True fake: scaffold gap size wrong estimation (local) 104903212 104905335 90706 88583 NC_000014.9 scf7180000172723 99.76 True fake: scaffold gap size wrong estimation (local) 104899760 104903078 94179 90826 NC_000014.9 scf7180000172723 99.55 True fake: scaffold gap size wrong estimation (local) 104897197 104899613 96779 94352 NC_000014.9 scf7180000172723 99.88 True fake: scaffold gap size wrong estimation (local) 104872361 104897026 120660 96916 NC_000014.9 scf7180000172723 95.73 True local misassembly 104865231 104872160 127620 120690 NC_000014.9 scf7180000172723 99.87 True fake: scaffold gap size wrong estimation (local) 104863802 104865096 129021 127727 NC_000014.9 scf7180000172723 99.77 True indel: indel (<= 5bp) 104862379 104863798 130441 129022 NC_000014.9 scf7180000172723 99.79 True local misassembly 104861532 104862088 131106 130550 NC_000014.9 scf7180000172723 99.64 True fake: scaffold gap size wrong estimation (local) 104855217 104859290 137211 133080 NC_000014.9 scf7180000172723 99.16 True fake: scaffold gap size wrong estimation (local) 104853003 104854370 139421 138054 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 104851605 104852694 141030 139941 NC_000014.9 scf7180000172723 97.98 True fake: scaffold gap size wrong estimation (local) 104848787 104849970 143721 142540 NC_000014.9 scf7180000172723 99.14 True fake: scaffold gap size wrong estimation (local) 104847997 104848503 144442 143936 NC_000014.9 scf7180000172723 95.86 True fake: scaffold gap size wrong estimation (local) 104840911 104847175 151474 145210 NC_000014.9 scf7180000172723 99.67 True relocation, scaffold gap is present, inconsistency = -1405715 106238494 106243171 159584 154929 NC_000014.9 scf7180000172723 99.25 True fake: scaffold gap size wrong estimation (local) 106237351 106238145 160753 159959 NC_000014.9 scf7180000172723 99.87 True fake: scaffold gap size wrong estimation (local) 106232694 106234235 165470 163929 NC_000014.9 scf7180000172723 100.0 True fake: scaffold gap size wrong estimation (local) 106221935 106231069 176700 167541 NC_000014.9 scf7180000172723 99.53 True fake: scaffold gap size wrong estimation (local) 106219895 106220479 178582 177998 NC_000014.9 scf7180000172723 96.07 True indel: indel (> 5bp) 106219153 106219869 179299 178583 NC_000014.9 scf7180000172723 96.09 True local misassembly 106217305 106218019 181098 180384 NC_000014.9 scf7180000172723 98.74 True fake: scaffold gap size wrong estimation (local) 106216521 106217304 182811 182028 NC_000014.9 scf7180000172723 99.87 True CONTIG scf7180000172723 182823 misassembled 92652325 92653804 1 1480 NC_000014.9 scf7180000172724 99.93 True relocation, inconsistency = 2202323 94856128 94857315 2668 1481 NC_000014.9 scf7180000172724 100.0 True relocation, inconsistency = 69133185 25720815 25722935 4796 2676 NC_000014.9 scf7180000172724 99.72 True fake: scaffold gap size wrong estimation (local) 25704421 25717716 20991 7769 NC_000014.9 scf7180000172724 99.24 True fake: scaffold gap size wrong estimation (local) 25671360 25703904 54009 21344 NC_000014.9 scf7180000172724 97.98 True fake: scaffold gap size wrong estimation (local) 25655416 25671029 69883 54271 NC_000014.9 scf7180000172724 99.84 True fake: scaffold gap size wrong estimation (local) 25615860 25655216 110017 70030 NC_000014.9 scf7180000172724 98.39 True fake: scaffold gap size wrong estimation (local) 25606548 25615466 119031 110054 NC_000014.9 scf7180000172724 98.49 True fake: scaffold gap size wrong estimation (local) 25591696 25606304 133586 119199 NC_000014.9 scf7180000172724 98.42 True fake: scaffold gap size wrong estimation (local) 25584486 25590879 140813 134421 NC_000014.9 scf7180000172724 99.84 True fake: scaffold gap size wrong estimation (local) 25581154 25584302 144164 141016 NC_000014.9 scf7180000172724 99.55 True fake: scaffold gap size wrong estimation (local) 25536808 25580687 188396 144564 NC_000014.9 scf7180000172724 99.58 True fake: scaffold gap size wrong estimation (local) 25524061 25536613 201570 188521 NC_000014.9 scf7180000172724 95.99 True fake: scaffold gap size wrong estimation (local) 25520215 25523818 205324 201722 NC_000014.9 scf7180000172724 99.81 True fake: not a misassembly (possible transposable element) 58437709 58439344 206960 205325 NC_000014.9 scf7180000172724 100.0 True fake: not a misassembly (possible transposable element) 25515469 25520047 211559 206981 NC_000014.9 scf7180000172724 99.93 True fake: scaffold gap size wrong estimation (local) 25493317 25515197 233665 211839 NC_000014.9 scf7180000172724 99.69 True fake: scaffold gap size wrong estimation (local) 25474948 25493094 251986 233843 NC_000014.9 scf7180000172724 99.87 True fake: scaffold gap size wrong estimation (local) 25450029 25474174 277133 252696 NC_000014.9 scf7180000172724 98.43 True fake: scaffold gap size wrong estimation (local) 25448730 25449817 278310 277207 NC_000014.9 scf7180000172724 97.37 True fake: not a misassembly (possible transposable element) 76618635 76619974 279673 278332 NC_000014.9 scf7180000172724 99.86 True fake: not a misassembly (possible transposable element) 25434179 25448574 294535 279674 NC_000014.9 scf7180000172724 96.87 True fake: scaffold gap size wrong estimation (local) 25428294 25433371 300811 295735 NC_000014.9 scf7180000172724 99.51 True CONTIG scf7180000172724 301444 misassembled 64939928 64949571 1 9648 NC_000014.9 scf7180000172725 99.88 True indel: indel (> 5bp) 64949735 64961917 9799 21753 NC_000014.9 scf7180000172725 98.06 True fake: scaffold gap size wrong estimation (local) 64962173 64964325 21982 24137 NC_000014.9 scf7180000172725 99.81 True fake: scaffold gap size wrong estimation (local) 64964849 64972233 24684 31914 NC_000014.9 scf7180000172725 97.8 True fake: scaffold gap size wrong estimation (local) 64972340 64973730 32017 33525 NC_000014.9 scf7180000172725 99.78 True fake: scaffold gap size wrong estimation (local) 64978135 64978874 36613 37352 NC_000014.9 scf7180000172725 99.32 True local misassembly 64976504 64977484 37411 38391 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 64979417 64980066 38412 39061 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 64980119 64983176 39294 42281 NC_000014.9 scf7180000172725 97.66 True fake: scaffold gap size wrong estimation (local) 64983436 65002385 42548 61762 NC_000014.9 scf7180000172725 98.43 True fake: scaffold gap size wrong estimation (local) 65002520 65004710 61913 64103 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65004937 65011202 64334 70605 NC_000014.9 scf7180000172725 99.71 True fake: scaffold gap size wrong estimation (local) 65011401 65015130 70770 74497 NC_000014.9 scf7180000172725 99.73 True fake: scaffold gap size wrong estimation (local) 65015430 65016935 74756 76261 NC_000014.9 scf7180000172725 100.0 True local misassembly 65017065 65017735 76262 76932 NC_000014.9 scf7180000172725 96.72 True fake: scaffold gap size wrong estimation (local) 65017885 65018808 77267 78190 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65019525 65020499 78703 79677 NC_000014.9 scf7180000172725 99.79 True fake: scaffold gap size wrong estimation (local) 65020841 65022674 80062 81895 NC_000014.9 scf7180000172725 99.4 True indel: indel (<= 5bp) 65022676 65023984 81896 83204 NC_000014.9 scf7180000172725 99.85 True indel: indel (<= 5bp) 65023985 65025737 83209 84961 NC_000014.9 scf7180000172725 98.92 True fake: scaffold gap size wrong estimation (local) 65025738 65030972 85580 90814 NC_000014.9 scf7180000172725 99.96 True fake: scaffold gap size wrong estimation (local) 65030973 65031858 91258 92143 NC_000014.9 scf7180000172725 99.66 True fake: scaffold gap size wrong estimation (local) 65031859 65033655 92181 93977 NC_000014.9 scf7180000172725 99.94 True fake: scaffold gap size wrong estimation (local) 65033823 65036491 94144 96812 NC_000014.9 scf7180000172725 99.85 True fake: scaffold gap size wrong estimation (local) 65038657 65040256 98703 100302 NC_000014.9 scf7180000172725 99.81 True fake: scaffold gap size wrong estimation (local) 65040623 65043566 100714 103657 NC_000014.9 scf7180000172725 99.86 True fake: scaffold gap size wrong estimation (local) 65043857 65045439 103878 105460 NC_000014.9 scf7180000172725 99.94 True fake: scaffold gap size wrong estimation (local) 65045596 65048934 105642 108951 NC_000014.9 scf7180000172725 98.86 True fake: scaffold gap size wrong estimation (local) 65049007 65051812 109134 112013 NC_000014.9 scf7180000172725 98.52 True fake: scaffold gap size wrong estimation (local) 65051987 65059895 112128 119981 NC_000014.9 scf7180000172725 99.26 True fake: scaffold gap size wrong estimation (local) 65060769 65066674 120982 126902 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65067170 65067674 127344 127848 NC_000014.9 scf7180000172725 99.8 True fake: scaffold gap size wrong estimation (local) 65067802 65078218 128197 138445 NC_000014.9 scf7180000172725 98.28 True fake: scaffold gap size wrong estimation (local) 65078525 65100196 138707 160669 NC_000014.9 scf7180000172725 98.61 True fake: scaffold gap size wrong estimation (local) 65100397 65105464 160851 165970 NC_000014.9 scf7180000172725 99.88 True fake: scaffold gap size wrong estimation (local) 65105589 65108641 166128 169177 NC_000014.9 scf7180000172725 99.44 True fake: scaffold gap size wrong estimation (local) 65108808 65116672 169332 177574 NC_000014.9 scf7180000172725 95.17 True fake: scaffold gap size wrong estimation (local) 65116868 65119230 177790 180088 NC_000014.9 scf7180000172725 97.18 True fake: scaffold gap size wrong estimation (local) 65120630 65121489 181362 182221 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65121715 65122563 182346 183194 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65123280 65124121 183941 184782 NC_000014.9 scf7180000172725 97.39 True fake: scaffold gap size wrong estimation (local) 65125150 65127944 185810 188526 NC_000014.9 scf7180000172725 97.07 True fake: scaffold gap size wrong estimation (local) 65128046 65129233 188652 189839 NC_000014.9 scf7180000172725 99.92 True fake: scaffold gap size wrong estimation (local) 65130079 65132795 190678 193360 NC_000014.9 scf7180000172725 98.36 True fake: scaffold gap size wrong estimation (local) 65132883 65134450 193463 195030 NC_000014.9 scf7180000172725 99.87 True fake: scaffold gap size wrong estimation (local) 65134721 65137545 195237 198061 NC_000014.9 scf7180000172725 99.82 True fake: scaffold gap size wrong estimation (local) 65137546 65138732 198554 199740 NC_000014.9 scf7180000172725 99.75 True fake: scaffold gap size wrong estimation (local) 65140761 65152403 200710 212278 NC_000014.9 scf7180000172725 99.16 True fake: scaffold gap size wrong estimation (local) 65152670 65153601 212617 213548 NC_000014.9 scf7180000172725 99.57 True fake: scaffold gap size wrong estimation (local) 65153900 65154545 213677 214322 NC_000014.9 scf7180000172725 99.85 True indel: indel (<= 5bp) 65154547 65155423 214323 215199 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65155574 65157285 215317 217028 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65158625 65160790 218343 220508 NC_000014.9 scf7180000172725 99.91 True indel: indel (<= 5bp) 65160791 65161305 220510 221024 NC_000014.9 scf7180000172725 99.81 True fake: scaffold gap size wrong estimation (local) 65162077 65163456 221701 223080 NC_000014.9 scf7180000172725 99.64 True fake: scaffold gap size wrong estimation (local) 65163692 65165125 223162 224595 NC_000014.9 scf7180000172725 100.0 True fake: scaffold gap size wrong estimation (local) 65165578 65170083 225044 229570 NC_000014.9 scf7180000172725 99.6 True fake: scaffold gap size wrong estimation (local) 65170342 65171720 229871 231249 NC_000014.9 scf7180000172725 99.93 True fake: scaffold gap size wrong estimation (local) 65171986 65172783 231368 232165 NC_000014.9 scf7180000172725 99.75 True fake: scaffold gap size wrong estimation (local) 65173330 65176126 232740 235536 NC_000014.9 scf7180000172725 99.89 True fake: scaffold gap size wrong estimation (local) 65176277 65178875 235643 238269 NC_000014.9 scf7180000172725 99.39 True CONTIG scf7180000172725 238943 correct 50012222 50014593 1 2372 NC_000014.9 scf7180000172726 99.87 True indel: indel (> 5bp) 50015061 50016710 2858 4507 NC_000014.9 scf7180000172726 99.94 True fake: scaffold gap size wrong estimation (local) 50016943 50023086 6638 12781 NC_000014.9 scf7180000172726 99.85 True fake: scaffold gap size wrong estimation (local) 50023299 50026244 12975 15922 NC_000014.9 scf7180000172726 99.9 True fake: scaffold gap size wrong estimation (local) 50027035 50029097 16701 18763 NC_000014.9 scf7180000172726 99.9 True fake: scaffold gap size wrong estimation (local) 50029315 50035551 18987 25236 NC_000014.9 scf7180000172726 99.15 True fake: scaffold gap size wrong estimation (local) 50035754 50037590 25396 27232 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50037775 50042695 27355 32275 NC_000014.9 scf7180000172726 99.96 True fake: scaffold gap size wrong estimation (local) 50042879 50043488 32549 33158 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50043677 50046507 33284 36114 NC_000014.9 scf7180000172726 99.93 True fake: scaffold gap size wrong estimation (local) 50048034 50048717 37716 38399 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50048862 50052470 38571 42184 NC_000014.9 scf7180000172726 99.83 True fake: scaffold gap size wrong estimation (local) 50052581 50054999 42372 44791 NC_000014.9 scf7180000172726 99.79 True fake: scaffold gap size wrong estimation (local) 50055541 50059126 45318 48908 NC_000014.9 scf7180000172726 99.58 True fake: scaffold gap size wrong estimation (local) 50059293 50071628 49014 61340 NC_000014.9 scf7180000172726 99.33 True fake: not a misassembly (possible transposable element) 52201046 52201615 61361 61930 NC_000014.9 scf7180000172726 99.3 True fake: not a misassembly (possible transposable element) 50071698 50074012 61957 64270 NC_000014.9 scf7180000172726 99.78 True relocation, scaffold gap is present, inconsistency = 2127786 52201819 52207164 64291 69634 NC_000014.9 scf7180000172726 99.05 True fake: scaffold gap size wrong estimation (local) 52207337 52209555 69849 72058 NC_000014.9 scf7180000172726 98.5 True relocation, scaffold gap is present, inconsistency = -2129981 50080767 50081500 73251 73984 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50081706 50087083 74293 79670 NC_000014.9 scf7180000172726 99.94 True fake: scaffold gap size wrong estimation (local) 50087084 50092957 80470 86343 NC_000014.9 scf7180000172726 99.86 True fake: scaffold gap size wrong estimation (local) 50092958 50095108 86374 88524 NC_000014.9 scf7180000172726 99.54 True fake: scaffold gap size wrong estimation (local) 50095413 50105468 88784 98463 NC_000014.9 scf7180000172726 96.14 True fake: scaffold gap size wrong estimation (local) 50105595 50107337 98548 100384 NC_000014.9 scf7180000172726 95.65 True fake: scaffold gap size wrong estimation (local) 50107513 50112829 100538 105901 NC_000014.9 scf7180000172726 99.59 True fake: scaffold gap size wrong estimation (local) 50113059 50113794 106091 106826 NC_000014.9 scf7180000172726 99.73 True fake: scaffold gap size wrong estimation (local) 50113906 50119543 107033 112628 NC_000014.9 scf7180000172726 99.21 True fake: scaffold gap size wrong estimation (local) 50119984 50120757 113056 113829 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50120972 50122402 113943 115373 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50123645 50127156 116568 120079 NC_000014.9 scf7180000172726 99.89 True fake: scaffold gap size wrong estimation (local) 50127323 50129503 120379 122585 NC_000014.9 scf7180000172726 99.68 True fake: scaffold gap size wrong estimation (local) 50129656 50132362 122748 125454 NC_000014.9 scf7180000172726 99.96 True fake: scaffold gap size wrong estimation (local) 50132644 50133219 125965 126540 NC_000014.9 scf7180000172726 100.0 True local misassembly 50133337 50134853 126541 128057 NC_000014.9 scf7180000172726 98.68 True local misassembly 50135071 50136591 128058 129578 NC_000014.9 scf7180000172726 97.3 True fake: scaffold gap size wrong estimation (local) 50136798 50137691 130020 130913 NC_000014.9 scf7180000172726 97.65 True fake: scaffold gap size wrong estimation (local) 50138441 50140928 131494 133981 NC_000014.9 scf7180000172726 99.88 True local misassembly 50141244 50142019 133982 134757 NC_000014.9 scf7180000172726 99.87 True fake: scaffold gap size wrong estimation (local) 50142276 50143677 135220 136621 NC_000014.9 scf7180000172726 99.79 True fake: scaffold gap size wrong estimation (local) 50143879 50144550 136724 137395 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50144709 50145953 137516 138760 NC_000014.9 scf7180000172726 99.52 True local misassembly 50146569 50147425 138761 139617 NC_000014.9 scf7180000172726 97.43 True fake: scaffold gap size wrong estimation (local) 50147528 50148158 140087 140717 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50148412 50150579 140766 142933 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50151137 50152856 143520 145311 NC_000014.9 scf7180000172726 96.95 True fake: scaffold gap size wrong estimation (local) 50152966 50153651 145459 146144 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50153854 50158937 146505 151588 NC_000014.9 scf7180000172726 99.94 True fake: scaffold gap size wrong estimation (local) 50159174 50160380 151764 152970 NC_000014.9 scf7180000172726 99.83 True fake: scaffold gap size wrong estimation (local) 50160608 50167665 153236 160290 NC_000014.9 scf7180000172726 99.63 True fake: scaffold gap size wrong estimation (local) 50167880 50169216 160429 161765 NC_000014.9 scf7180000172726 100.0 True fake: scaffold gap size wrong estimation (local) 50169991 50170812 162618 163409 NC_000014.9 scf7180000172726 95.76 True fake: scaffold gap size wrong estimation (local) 50171721 50173454 164328 166061 NC_000014.9 scf7180000172726 99.94 True fake: scaffold gap size wrong estimation (local) 50173690 50178667 166215 171116 NC_000014.9 scf7180000172726 97.96 True fake: scaffold gap size wrong estimation (local) 50178886 50180150 171402 172666 NC_000014.9 scf7180000172726 99.92 True fake: scaffold gap size wrong estimation (local) 50181349 50184865 173777 177308 NC_000014.9 scf7180000172726 99.97 True relocation, inconsistency = -26326757 23858109 23874242 177309 193378 NC_000014.9 scf7180000172726 99.26 True fake: scaffold gap size wrong estimation (local) 23874374 23878215 193606 197447 NC_000014.9 scf7180000172726 99.77 True fake: scaffold gap size wrong estimation (local) 23878354 23880773 197535 199948 NC_000014.9 scf7180000172726 99.63 True fake: scaffold gap size wrong estimation (local) 23881030 23886736 200195 205889 NC_000014.9 scf7180000172726 99.74 True fake: scaffold gap size wrong estimation (local) 23886828 23890532 206091 209783 NC_000014.9 scf7180000172726 99.65 True fake: scaffold gap size wrong estimation (local) 23890905 23891764 209991 210818 NC_000014.9 scf7180000172726 96.05 True fake: scaffold gap size wrong estimation (local) 23892050 23892742 211132 211824 NC_000014.9 scf7180000172726 98.12 True fake: scaffold gap size wrong estimation (local) 23892965 23897884 211985 216904 NC_000014.9 scf7180000172726 99.92 True fake: scaffold gap size wrong estimation (local) 23899296 23902192 218245 221141 NC_000014.9 scf7180000172726 99.93 True fake: scaffold gap size wrong estimation (local) 23902306 23904183 221304 223156 NC_000014.9 scf7180000172726 98.55 True CONTIG scf7180000172726 223410 misassembled 65793076 65795443 1 2365 NC_000014.9 scf7180000172727 99.7 True relocation, inconsistency = 8764175 57026241 57028900 5024 2366 NC_000014.9 scf7180000172727 99.81 True fake: scaffold gap size wrong estimation (local) 57021123 57025925 10044 5242 NC_000014.9 scf7180000172727 99.92 True fake: scaffold gap size wrong estimation (local) 56996351 57020835 35159 10258 NC_000014.9 scf7180000172727 98.01 True fake: scaffold gap size wrong estimation (local) 56994961 56996140 36441 35262 NC_000014.9 scf7180000172727 99.75 True fake: scaffold gap size wrong estimation (local) 56991631 56994793 39848 36687 NC_000014.9 scf7180000172727 99.53 True fake: scaffold gap size wrong estimation (local) 56989393 56991489 42220 40090 NC_000014.9 scf7180000172727 99.01 True fake: scaffold gap size wrong estimation (local) 56987221 56988156 44270 43335 NC_000014.9 scf7180000172727 99.68 True fake: scaffold gap size wrong estimation (local) 56976891 56987126 54633 44372 NC_000014.9 scf7180000172727 99.71 True fake: scaffold gap size wrong estimation (local) 56971066 56976624 60385 54838 NC_000014.9 scf7180000172727 99.57 True fake: scaffold gap size wrong estimation (local) 56969471 56970915 61934 60490 NC_000014.9 scf7180000172727 100.0 True fake: scaffold gap size wrong estimation (local) 56950379 56969133 80991 62237 NC_000014.9 scf7180000172727 99.82 True fake: scaffold gap size wrong estimation (local) 56947256 56950322 84135 81069 NC_000014.9 scf7180000172727 99.87 True fake: scaffold gap size wrong estimation (local) 56942363 56947061 89014 84316 NC_000014.9 scf7180000172727 99.89 True fake: scaffold gap size wrong estimation (local) 56938296 56942161 93012 89148 NC_000014.9 scf7180000172727 99.84 True fake: scaffold gap size wrong estimation (local) 56936781 56938195 94594 93180 NC_000014.9 scf7180000172727 95.62 True local misassembly 56935586 56936670 95679 94595 NC_000014.9 scf7180000172727 100.0 True fake: scaffold gap size wrong estimation (local) 56932464 56935200 98898 96162 NC_000014.9 scf7180000172727 99.89 True fake: scaffold gap size wrong estimation (local) 56928306 56932213 103043 99125 NC_000014.9 scf7180000172727 99.05 True fake: scaffold gap size wrong estimation (local) 56927123 56928038 104173 103258 NC_000014.9 scf7180000172727 99.89 True fake: scaffold gap size wrong estimation (local) 56924596 56926902 106674 104368 NC_000014.9 scf7180000172727 99.83 True fake: scaffold gap size wrong estimation (local) 56916374 56924410 114818 106845 NC_000014.9 scf7180000172727 99.11 True fake: scaffold gap size wrong estimation (local) 56910188 56916209 120933 114880 NC_000014.9 scf7180000172727 99.9 True fake: scaffold gap size wrong estimation (local) 56902057 56909931 129060 121152 NC_000014.9 scf7180000172727 99.86 True fake: scaffold gap size wrong estimation (local) 56883470 56901902 147771 129169 NC_000014.9 scf7180000172727 99.48 True fake: scaffold gap size wrong estimation (local) 56879670 56883290 151731 147949 NC_000014.9 scf7180000172727 96.2 True fake: scaffold gap size wrong estimation (local) 56876028 56879521 155255 151808 NC_000014.9 scf7180000172727 98.15 True fake: scaffold gap size wrong estimation (local) 56873083 56875502 158168 155745 NC_000014.9 scf7180000172727 99.79 True fake: scaffold gap size wrong estimation (local) 56872306 56872952 159062 158416 NC_000014.9 scf7180000172727 96.75 True local misassembly 56871415 56872127 159775 159063 NC_000014.9 scf7180000172727 99.72 True fake: scaffold gap size wrong estimation (local) 56859302 56871098 171844 160150 NC_000014.9 scf7180000172727 98.44 True fake: not a misassembly (possible transposable element) 67847348 67848142 172776 171983 NC_000014.9 scf7180000172727 99.87 True fake: not a misassembly (possible transposable element) 56850771 56859153 181092 172803 NC_000014.9 scf7180000172727 98.6 True fake: scaffold gap size wrong estimation (local) 56848945 56850685 183049 181280 NC_000014.9 scf7180000172727 99.43 True fake: scaffold gap size wrong estimation (local) 56844077 56848275 187903 183675 NC_000014.9 scf7180000172727 99.6 True fake: scaffold gap size wrong estimation (local) 56843269 56843988 188716 187997 NC_000014.9 scf7180000172727 100.0 True fake: scaffold gap size wrong estimation (local) 56842493 56843023 189334 188804 NC_000014.9 scf7180000172727 99.81 True fake: scaffold gap size wrong estimation (local) 56838777 56842455 192986 189473 NC_000014.9 scf7180000172727 95.41 True fake: scaffold gap size wrong estimation (local) 56836535 56837434 193921 193022 NC_000014.9 scf7180000172727 99.78 True local misassembly 56837449 56838528 195054 193975 NC_000014.9 scf7180000172727 99.44 True fake: scaffold gap size wrong estimation (local) 56834352 56836295 197020 195077 NC_000014.9 scf7180000172727 98.92 True fake: scaffold gap size wrong estimation (local) 56830402 56833171 200894 198125 NC_000014.9 scf7180000172727 99.93 True fake: scaffold gap size wrong estimation (local) 56781374 56830291 250250 200996 NC_000014.9 scf7180000172727 98.55 True fake: scaffold gap size wrong estimation (local) 56769479 56781024 262051 250609 NC_000014.9 scf7180000172727 98.62 True fake: scaffold gap size wrong estimation (local) 56767899 56769214 263677 262276 NC_000014.9 scf7180000172727 95.15 True fake: scaffold gap size wrong estimation (local) 56766621 56767285 264843 264179 NC_000014.9 scf7180000172727 100.0 True fake: scaffold gap size wrong estimation (local) 56763028 56766401 268409 265022 NC_000014.9 scf7180000172727 99.91 True fake: scaffold gap size wrong estimation (local) 56761450 56762774 269951 268627 NC_000014.9 scf7180000172727 99.85 True fake: scaffold gap size wrong estimation (local) 56750956 56761316 280317 270040 NC_000014.9 scf7180000172727 99.1 True fake: scaffold gap size wrong estimation (local) 56743823 56750691 287392 280566 NC_000014.9 scf7180000172727 99.24 True fake: scaffold gap size wrong estimation (local) 56741845 56743661 289378 287562 NC_000014.9 scf7180000172727 99.83 True fake: scaffold gap size wrong estimation (local) 56736123 56741178 295067 290012 NC_000014.9 scf7180000172727 99.72 True fake: scaffold gap size wrong estimation (local) 56735395 56736122 296192 295465 NC_000014.9 scf7180000172727 97.25 True local misassembly 56733183 56735192 298202 296193 NC_000014.9 scf7180000172727 99.8 True fake: scaffold gap size wrong estimation (local) 56729005 56732971 302376 298436 NC_000014.9 scf7180000172727 99.26 True fake: scaffold gap size wrong estimation (local) 56725948 56728676 305452 302712 NC_000014.9 scf7180000172727 99.74 True fake: scaffold gap size wrong estimation (local) 56724918 56725763 306467 305622 NC_000014.9 scf7180000172727 99.65 True fake: scaffold gap size wrong estimation (local) 56717791 56724527 313672 306902 NC_000014.9 scf7180000172727 99.64 True fake: scaffold gap size wrong estimation (local) 56712204 56717557 319132 313853 NC_000014.9 scf7180000172727 98.42 True fake: scaffold gap size wrong estimation (local) 56701160 56712036 330116 319287 NC_000014.9 scf7180000172727 98.94 True fake: scaffold gap size wrong estimation (local) 56695295 56701014 336180 330254 NC_000014.9 scf7180000172727 96.2 True fake: scaffold gap size wrong estimation (local) 56693349 56695050 338145 336444 NC_000014.9 scf7180000172727 99.88 True fake: scaffold gap size wrong estimation (local) 56685927 56693309 345603 338188 NC_000014.9 scf7180000172727 99.77 True fake: scaffold gap size wrong estimation (local) 56676997 56685640 354433 345832 NC_000014.9 scf7180000172727 99.33 True fake: scaffold gap size wrong estimation (local) 56674286 56676865 357168 354589 NC_000014.9 scf7180000172727 99.73 True fake: scaffold gap size wrong estimation (local) 56673558 56674144 358054 357468 NC_000014.9 scf7180000172727 99.66 True fake: scaffold gap size wrong estimation (local) 56654844 56667554 377693 365029 NC_000014.9 scf7180000172727 98.96 True fake: scaffold gap size wrong estimation (local) 56653568 56654592 379005 377986 NC_000014.9 scf7180000172727 99.41 True fake: scaffold gap size wrong estimation (local) 56645634 56653038 386858 379424 NC_000014.9 scf7180000172727 99.76 True fake: scaffold gap size wrong estimation (local) 56640487 56641196 391884 391178 NC_000014.9 scf7180000172727 97.32 True fake: scaffold gap size wrong estimation (local) 56634825 56639837 397815 392803 NC_000014.9 scf7180000172727 99.74 True fake: not a misassembly (possible transposable element) 99027930 99028576 398462 397816 NC_000014.9 scf7180000172727 99.56 True fake: not a misassembly (possible transposable element) 56631644 56634768 401607 398483 NC_000014.9 scf7180000172727 99.71 True fake: scaffold gap size wrong estimation (local) 56629121 56631405 404125 401827 NC_000014.9 scf7180000172727 99.91 True fake: scaffold gap size wrong estimation (local) 56624541 56628910 408658 404289 NC_000014.9 scf7180000172727 99.95 True fake: scaffold gap size wrong estimation (local) 56622349 56624347 410803 408805 NC_000014.9 scf7180000172727 99.9 True fake: scaffold gap size wrong estimation (local) 56614242 56622081 418848 411009 NC_000014.9 scf7180000172727 99.96 True fake: scaffold gap size wrong estimation (local) 56611246 56614090 421842 418996 NC_000014.9 scf7180000172727 99.08 True fake: scaffold gap size wrong estimation (local) 56596809 56610383 436201 422627 NC_000014.9 scf7180000172727 99.96 True fake: scaffold gap size wrong estimation (local) 56593962 56596395 439046 436613 NC_000014.9 scf7180000172727 99.88 True fake: scaffold gap size wrong estimation (local) 56573163 56593679 459821 439290 NC_000014.9 scf7180000172727 99.9 True fake: scaffold gap size wrong estimation (local) 56571758 56573017 461230 459909 NC_000014.9 scf7180000172727 96.16 True fake: scaffold gap size wrong estimation (local) 56564849 56571542 468139 461465 NC_000014.9 scf7180000172727 99.69 True fake: scaffold gap size wrong estimation (local) 56562681 56563651 470137 469167 NC_000014.9 scf7180000172727 99.9 True fake: scaffold gap size wrong estimation (local) 56561451 56562006 471121 470566 NC_000014.9 scf7180000172727 99.82 True fake: scaffold gap size wrong estimation (local) 56559748 56561400 473253 471594 NC_000014.9 scf7180000172727 99.57 True fake: scaffold gap size wrong estimation (local) 56534217 56559480 499121 473591 NC_000014.9 scf7180000172727 97.9 True fake: scaffold gap size wrong estimation (local) 56529661 56534121 503675 499225 NC_000014.9 scf7180000172727 99.66 True fake: scaffold gap size wrong estimation (local) 56527493 56529406 506204 504291 NC_000014.9 scf7180000172727 99.95 True indel: indel (<= 5bp) 56526136 56527490 507559 506205 NC_000014.9 scf7180000172727 100.0 True fake: scaffold gap size wrong estimation (local) 56523556 56525700 510608 508464 NC_000014.9 scf7180000172727 99.91 True fake: scaffold gap size wrong estimation (local) 56513049 56523378 521495 510742 NC_000014.9 scf7180000172727 96.07 True CONTIG scf7180000172727 521514 misassembled 24004306 24005222 1 917 NC_000014.9 scf7180000172728 99.56 True indel: indel (<= 5bp) 24005466 24006005 1156 1695 NC_000014.9 scf7180000172728 99.81 True local misassembly 24006149 24007480 1696 3027 NC_000014.9 scf7180000172728 97.52 True indel: indel (<= 5bp) 24007481 24009208 3030 4757 NC_000014.9 scf7180000172728 99.77 True indel: indel (<= 5bp) 24009250 24009975 4797 5522 NC_000014.9 scf7180000172728 99.04 True indel: indel (<= 5bp) 24009976 24011226 5527 6777 NC_000014.9 scf7180000172728 99.68 True indel: indel (<= 5bp) 24011227 24012139 6780 7692 NC_000014.9 scf7180000172728 99.89 True fake: scaffold gap size wrong estimation (local) 24012140 24015225 7713 10798 NC_000014.9 scf7180000172728 99.9 True local misassembly 24016106 24016804 10799 11497 NC_000014.9 scf7180000172728 95.42 True fake: scaffold gap size wrong estimation (local) 24018082 24019295 11549 12788 NC_000014.9 scf7180000172728 95.97 True fake: not a misassembly (possible transposable element) 53116537 53117290 12850 13603 NC_000014.9 scf7180000172728 99.87 True fake: not a misassembly (possible transposable element) 24016836 24017814 13624 14601 NC_000014.9 scf7180000172728 97.04 True relocation, scaffold gap is present, inconsistency = -41608 23976736 23978812 15131 17207 NC_000014.9 scf7180000172728 99.47 True fake: not a misassembly (possible transposable element) 53119180 53120045 17208 18073 NC_000014.9 scf7180000172728 99.38 True fake: not a misassembly (possible transposable element) 23979171 23981003 18166 20017 NC_000014.9 scf7180000172728 99.45 True relocation, scaffold gap is present, inconsistency = 29140404 53121662 53122730 20272 21340 NC_000014.9 scf7180000172728 99.91 True relocation, scaffold gap is present, inconsistency = -29098711 24024173 24026166 21494 23487 NC_000014.9 scf7180000172728 99.75 True relocation, scaffold gap is present, inconsistency = -42861 23983794 23984397 23976 24579 NC_000014.9 scf7180000172728 100.0 True relocation, scaffold gap is present, inconsistency = 18812536 42796954 42797817 25463 24600 NC_000014.9 scf7180000172728 100.0 True fake: scaffold gap size wrong estimation (local) 42795137 42795648 27145 26634 NC_000014.9 scf7180000172728 99.02 True fake: scaffold gap size wrong estimation (local) 42787986 42794674 34397 27676 NC_000014.9 scf7180000172728 99.51 True fake: scaffold gap size wrong estimation (local) 42780812 42787711 41443 34605 NC_000014.9 scf7180000172728 98.87 True fake: scaffold gap size wrong estimation (local) 42774665 42779655 47517 42505 NC_000014.9 scf7180000172728 99.68 True fake: scaffold gap size wrong estimation (local) 42765551 42774468 56560 47670 NC_000014.9 scf7180000172728 99.35 True fake: scaffold gap size wrong estimation (local) 42758383 42765121 63652 56901 NC_000014.9 scf7180000172728 99.32 True fake: scaffold gap size wrong estimation (local) 42750142 42758242 72090 63997 NC_000014.9 scf7180000172728 99.28 True fake: scaffold gap size wrong estimation (local) 42729052 42749915 93514 72274 NC_000014.9 scf7180000172728 98.43 True fake: scaffold gap size wrong estimation (local) 42726037 42728806 96423 93657 NC_000014.9 scf7180000172728 99.78 True fake: scaffold gap size wrong estimation (local) 42708101 42725791 114257 96634 NC_000014.9 scf7180000172728 99.59 True fake: scaffold gap size wrong estimation (local) 42698869 42707780 123461 114550 NC_000014.9 scf7180000172728 99.74 True fake: scaffold gap size wrong estimation (local) 42666889 42698388 155565 123855 NC_000014.9 scf7180000172728 98.82 True fake: not a misassembly (possible transposable element) 63083661 63084394 156952 156219 NC_000014.9 scf7180000172728 100.0 True fake: not a misassembly (possible transposable element) 42661849 42666984 162085 156973 NC_000014.9 scf7180000172728 99.06 True indel: indel (> 5bp) 42660328 42661759 163614 162187 NC_000014.9 scf7180000172728 99.58 True fake: scaffold gap size wrong estimation (local) 42657656 42659677 166189 164168 NC_000014.9 scf7180000172728 99.7 True fake: scaffold gap size wrong estimation (local) 42656636 42657192 167329 166773 NC_000014.9 scf7180000172728 96.41 True local misassembly 42655371 42656509 168468 167330 NC_000014.9 scf7180000172728 99.82 True fake: scaffold gap size wrong estimation (local) 42645166 42655279 178588 168558 NC_000014.9 scf7180000172728 99.09 True fake: scaffold gap size wrong estimation (local) 42619750 42644676 203910 179020 NC_000014.9 scf7180000172728 99.52 True fake: not a misassembly (possible transposable element) 85296426 85297030 204515 203911 NC_000014.9 scf7180000172728 100.0 True fake: not a misassembly (possible transposable element) 42613408 42619889 211015 204536 NC_000014.9 scf7180000172728 99.89 True fake: scaffold gap size wrong estimation (local) 42612078 42613242 212300 211136 NC_000014.9 scf7180000172728 99.83 True fake: scaffold gap size wrong estimation (local) 42608777 42611908 215596 212465 NC_000014.9 scf7180000172728 99.9 True fake: scaffold gap size wrong estimation (local) 42606710 42608050 217605 216265 NC_000014.9 scf7180000172728 100.0 True local misassembly 42603375 42606583 220814 217606 NC_000014.9 scf7180000172728 99.94 True fake: scaffold gap size wrong estimation (local) 42598182 42603110 226019 221091 NC_000014.9 scf7180000172728 99.72 True indel: indel (> 5bp) 42595046 42598181 229164 226029 NC_000014.9 scf7180000172728 100.0 True indel: indel (<= 5bp) 42593563 42595045 230649 229167 NC_000014.9 scf7180000172728 100.0 True indel: indel (<= 5bp) 42588897 42593561 235314 230650 NC_000014.9 scf7180000172728 99.27 True indel: indel (> 5bp) 42586000 42588850 238165 235315 NC_000014.9 scf7180000172728 99.89 True fake: scaffold gap size wrong estimation (local) 42584192 42585911 241153 239434 NC_000014.9 scf7180000172728 99.83 True indel: indel (> 5bp) 42581891 42584185 243448 241154 NC_000014.9 scf7180000172728 99.08 True fake: scaffold gap size wrong estimation (local) 42577818 42581656 247483 243646 NC_000014.9 scf7180000172728 99.82 True fake: scaffold gap size wrong estimation (local) 42568616 42576957 256590 248249 NC_000014.9 scf7180000172728 99.92 True fake: scaffold gap size wrong estimation (local) 42534633 42566782 290362 258171 NC_000014.9 scf7180000172728 99.93 True fake: scaffold gap size wrong estimation (local) 42516318 42534382 308704 290702 NC_000014.9 scf7180000172728 99.59 True fake: scaffold gap size wrong estimation (local) 42508077 42516028 316820 308873 NC_000014.9 scf7180000172728 99.87 True fake: scaffold gap size wrong estimation (local) 42501576 42507210 323227 317593 NC_000014.9 scf7180000172728 99.89 True fake: scaffold gap size wrong estimation (local) 42485101 42499826 339502 324792 NC_000014.9 scf7180000172728 99.58 True fake: scaffold gap size wrong estimation (local) 42482570 42484840 342060 339790 NC_000014.9 scf7180000172728 99.91 True fake: scaffold gap size wrong estimation (local) 42481701 42482265 343349 342785 NC_000014.9 scf7180000172728 97.88 True indel: indel (<= 5bp) 42466008 42481625 359228 343424 NC_000014.9 scf7180000172728 98.79 True fake: scaffold gap size wrong estimation (local) 42459203 42465815 366103 359507 NC_000014.9 scf7180000172728 99.49 True fake: scaffold gap size wrong estimation (local) 42445727 42458686 379599 366596 NC_000014.9 scf7180000172728 99.83 True fake: scaffold gap size wrong estimation (local) 42439732 42444709 385527 380549 NC_000014.9 scf7180000172728 99.94 True fake: scaffold gap size wrong estimation (local) 42435254 42439488 389855 385741 NC_000014.9 scf7180000172728 96.99 True fake: scaffold gap size wrong estimation (local) 42434628 42435146 390585 390067 NC_000014.9 scf7180000172728 99.81 True CONTIG scf7180000172728 390585 misassembled 58110104 58117999 7702 1 NC_000014.9 scf7180000172729 96.94 True fake: scaffold gap size wrong estimation (local) 58102921 58110271 15426 8047 NC_000014.9 scf7180000172729 98.63 True fake: scaffold gap size wrong estimation (local) 58094326 58102555 24025 15796 NC_000014.9 scf7180000172729 100.0 True fake: scaffold gap size wrong estimation (local) 58081729 58094131 36752 24186 NC_000014.9 scf7180000172729 98.76 True fake: scaffold gap size wrong estimation (local) 58080992 58081526 37542 37008 NC_000014.9 scf7180000172729 99.81 True local misassembly 58080330 58080856 38069 37543 NC_000014.9 scf7180000172729 100.0 True fake: scaffold gap size wrong estimation (local) 58072648 58080162 45666 38248 NC_000014.9 scf7180000172729 98.57 True fake: scaffold gap size wrong estimation (local) 58054884 58072529 63388 45799 NC_000014.9 scf7180000172729 99.48 True fake: scaffold gap size wrong estimation (local) 58049231 58054698 69006 63539 NC_000014.9 scf7180000172729 99.89 True fake: scaffold gap size wrong estimation (local) 58045477 58049033 72702 69146 NC_000014.9 scf7180000172729 99.66 True fake: scaffold gap size wrong estimation (local) 58038568 58041058 79227 76738 NC_000014.9 scf7180000172729 99.56 True relocation, scaffold gap is present, inconsistency = 12713061 45324939 45325486 79248 79795 NC_000014.9 scf7180000172729 99.64 True fake: scaffold gap size wrong estimation (local) 45326556 45327418 81361 82223 NC_000014.9 scf7180000172729 99.88 True fake: scaffold gap size wrong estimation (local) 45329691 45331056 84173 85538 NC_000014.9 scf7180000172729 99.93 True relocation, scaffold gap is present, inconsistency = 12698376 58029505 58032763 88869 85611 NC_000014.9 scf7180000172729 99.79 True fake: scaffold gap size wrong estimation (local) 58017845 58029307 100646 88995 NC_000014.9 scf7180000172729 97.82 True fake: scaffold gap size wrong estimation (local) 58014024 58017284 104357 101013 NC_000014.9 scf7180000172729 97.86 True fake: scaffold gap size wrong estimation (local) 58006835 58013844 111537 104566 NC_000014.9 scf7180000172729 98.88 True indel: indel (> 5bp) 58000867 58006737 117493 111623 NC_000014.9 scf7180000172729 99.88 True fake: scaffold gap size wrong estimation (local) 57985303 58000671 133017 117652 NC_000014.9 scf7180000172729 99.77 True fake: scaffold gap size wrong estimation (local) 57958305 57985150 159959 133121 NC_000014.9 scf7180000172729 99.84 True fake: scaffold gap size wrong estimation (local) 57957300 57958157 160965 160108 NC_000014.9 scf7180000172729 100.0 True fake: scaffold gap size wrong estimation (local) 57954343 57955488 164171 163064 NC_000014.9 scf7180000172729 96.27 True relocation, inconsistency = 20592719 37360913 37361623 164172 164882 NC_000014.9 scf7180000172729 98.33 True fake: scaffold gap size wrong estimation (local) 37362742 37363451 166353 167062 NC_000014.9 scf7180000172729 99.15 True fake: scaffold gap size wrong estimation (local) 37363649 37365330 167222 168903 NC_000014.9 scf7180000172729 99.76 True fake: scaffold gap size wrong estimation (local) 37365980 37374119 169553 177710 NC_000014.9 scf7180000172729 97.63 True fake: scaffold gap size wrong estimation (local) 37374877 37391411 178373 195016 NC_000014.9 scf7180000172729 99.35 True fake: scaffold gap size wrong estimation (local) 37391667 37394399 195228 197948 NC_000014.9 scf7180000172729 99.34 True fake: scaffold gap size wrong estimation (local) 37395275 37398206 198692 201623 NC_000014.9 scf7180000172729 99.86 True indel: indel (<= 5bp) 37398293 37415368 201708 218818 NC_000014.9 scf7180000172729 99.88 True fake: scaffold gap size wrong estimation (local) 37415629 37419784 219061 223216 NC_000014.9 scf7180000172729 99.98 True fake: scaffold gap size wrong estimation (local) 37419964 37426403 223354 229793 NC_000014.9 scf7180000172729 99.92 True fake: scaffold gap size wrong estimation (local) 37426597 37428364 229887 231654 NC_000014.9 scf7180000172729 99.94 True fake: scaffold gap size wrong estimation (local) 37428488 37431574 231762 234847 NC_000014.9 scf7180000172729 99.9 True fake: scaffold gap size wrong estimation (local) 37431801 37433189 234998 236386 NC_000014.9 scf7180000172729 99.86 True fake: scaffold gap size wrong estimation (local) 37433756 37439917 236943 243087 NC_000014.9 scf7180000172729 99.3 True fake: scaffold gap size wrong estimation (local) 37441449 37442384 244533 245468 NC_000014.9 scf7180000172729 99.79 True CONTIG scf7180000172729 245468 misassembled 67874350 67890487 16127 1 NC_000014.9 scf7180000172730 99.79 True fake: scaffold gap size wrong estimation (local) 67865626 67868577 27693 24780 NC_000014.9 scf7180000172730 97.38 True fake: scaffold gap size wrong estimation (local) 67864970 67865485 28356 27841 NC_000014.9 scf7180000172730 96.12 True indel: indel (> 5bp) 67864061 67864961 29257 28357 NC_000014.9 scf7180000172730 99.89 True indel: indel (<= 5bp) 67863191 67864060 30128 29259 NC_000014.9 scf7180000172730 99.77 True fake: scaffold gap size wrong estimation (local) 67861578 67863150 32689 31117 NC_000014.9 scf7180000172730 100.0 True fake: not a misassembly (possible transposable element) 96463726 96464531 33892 33087 NC_000014.9 scf7180000172730 99.75 True fake: not a misassembly (possible transposable element) 67855488 67861124 39638 34035 NC_000014.9 scf7180000172730 99.2 True fake: scaffold gap size wrong estimation (local) 67848148 67854385 46871 40713 NC_000014.9 scf7180000172730 98.68 True fake: scaffold gap size wrong estimation (local) 67845591 67847335 49382 47638 NC_000014.9 scf7180000172730 99.94 True fake: scaffold gap size wrong estimation (local) 67841033 67845235 53912 49891 NC_000014.9 scf7180000172730 95.49 True fake: scaffold gap size wrong estimation (local) 67831685 67840923 63887 54537 NC_000014.9 scf7180000172730 96.33 True fake: scaffold gap size wrong estimation (local) 67829540 67831574 66015 64028 NC_000014.9 scf7180000172730 97.62 True fake: scaffold gap size wrong estimation (local) 67819496 67829119 76295 66661 NC_000014.9 scf7180000172730 99.5 True fake: scaffold gap size wrong estimation (local) 67818261 67819122 77932 77071 NC_000014.9 scf7180000172730 97.1 True local misassembly 67814432 67817665 81166 77933 NC_000014.9 scf7180000172730 98.08 True indel: indel (> 5bp) 67810018 67814407 85556 81167 NC_000014.9 scf7180000172730 99.93 True fake: scaffold gap size wrong estimation (local) 67805959 67809798 89649 85803 NC_000014.9 scf7180000172730 99.82 True fake: scaffold gap size wrong estimation (local) 67803574 67805814 91991 89751 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67801237 67803394 94316 92159 NC_000014.9 scf7180000172730 99.95 True fake: scaffold gap size wrong estimation (local) 67796930 67800953 98576 94553 NC_000014.9 scf7180000172730 99.95 True fake: scaffold gap size wrong estimation (local) 67793098 67796810 102365 98653 NC_000014.9 scf7180000172730 99.92 True fake: scaffold gap size wrong estimation (local) 67792064 67792920 103348 102492 NC_000014.9 scf7180000172730 99.88 True fake: scaffold gap size wrong estimation (local) 67780026 67791866 115352 103511 NC_000014.9 scf7180000172730 99.6 True fake: scaffold gap size wrong estimation (local) 67759639 67779931 135803 115609 NC_000014.9 scf7180000172730 99.2 True fake: scaffold gap size wrong estimation (local) 67757959 67758643 137535 136851 NC_000014.9 scf7180000172730 99.56 True fake: scaffold gap size wrong estimation (local) 67751827 67757667 143558 137718 NC_000014.9 scf7180000172730 99.97 True fake: scaffold gap size wrong estimation (local) 67744990 67751619 150391 143727 NC_000014.9 scf7180000172730 99.91 True fake: scaffold gap size wrong estimation (local) 67742953 67744733 152356 150557 NC_000014.9 scf7180000172730 99.04 True fake: scaffold gap size wrong estimation (local) 67733135 67742807 162145 152495 NC_000014.9 scf7180000172730 99.19 True fake: scaffold gap size wrong estimation (local) 67716199 67731875 178846 163362 NC_000014.9 scf7180000172730 98.58 True fake: scaffold gap size wrong estimation (local) 67713905 67715953 181104 179055 NC_000014.9 scf7180000172730 99.8 True fake: scaffold gap size wrong estimation (local) 67712891 67713398 181896 181389 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67710772 67712499 184286 182541 NC_000014.9 scf7180000172730 98.38 True fake: scaffold gap size wrong estimation (local) 67708960 67709873 186268 185355 NC_000014.9 scf7180000172730 99.67 True fake: scaffold gap size wrong estimation (local) 67701703 67707474 192349 186361 NC_000014.9 scf7180000172730 96.53 True fake: scaffold gap size wrong estimation (local) 67693711 67700462 200157 193483 NC_000014.9 scf7180000172730 97.68 True fake: scaffold gap size wrong estimation (local) 67687694 67693654 206189 200180 NC_000014.9 scf7180000172730 99.03 True fake: scaffold gap size wrong estimation (local) 67686608 67687466 207348 206490 NC_000014.9 scf7180000172730 95.46 True local misassembly 67685774 67686508 208083 207349 NC_000014.9 scf7180000172730 99.46 True indel: indel (<= 5bp) 67681682 67685680 212196 208182 NC_000014.9 scf7180000172730 99.85 True fake: scaffold gap size wrong estimation (local) 67679677 67681597 214259 212339 NC_000014.9 scf7180000172730 99.95 True fake: scaffold gap size wrong estimation (local) 67672679 67679515 221302 214412 NC_000014.9 scf7180000172730 99.69 True fake: scaffold gap size wrong estimation (local) 67671463 67672457 222560 221567 NC_000014.9 scf7180000172730 99.8 True fake: scaffold gap size wrong estimation (local) 67670807 67671327 223145 222625 NC_000014.9 scf7180000172730 99.81 True fake: scaffold gap size wrong estimation (local) 67667929 67670681 226079 223302 NC_000014.9 scf7180000172730 99.49 True fake: scaffold gap size wrong estimation (local) 67662904 67667699 230923 226255 NC_000014.9 scf7180000172730 97.09 True fake: scaffold gap size wrong estimation (local) 67662082 67662655 231972 231399 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67658581 67661551 235273 232271 NC_000014.9 scf7180000172730 99.97 True fake: scaffold gap size wrong estimation (local) 67644998 67657766 248792 236022 NC_000014.9 scf7180000172730 98.96 True fake: scaffold gap size wrong estimation (local) 67637416 67644818 256311 249027 NC_000014.9 scf7180000172730 98.02 True fake: scaffold gap size wrong estimation (local) 67633083 67637206 260583 256475 NC_000014.9 scf7180000172730 99.48 True fake: scaffold gap size wrong estimation (local) 67630854 67632755 262825 260926 NC_000014.9 scf7180000172730 99.47 True fake: scaffold gap size wrong estimation (local) 67626172 67630608 267548 263116 NC_000014.9 scf7180000172730 99.84 True fake: scaffold gap size wrong estimation (local) 67617949 67625153 276076 269054 NC_000014.9 scf7180000172730 97.35 True fake: scaffold gap size wrong estimation (local) 67617107 67617862 276949 276194 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67612935 67616868 280989 277057 NC_000014.9 scf7180000172730 99.85 True fake: scaffold gap size wrong estimation (local) 67611744 67612683 282008 281069 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67607620 67611351 286283 282552 NC_000014.9 scf7180000172730 99.44 True local misassembly 67606909 67607437 286812 286284 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67604112 67606755 289750 287099 NC_000014.9 scf7180000172730 99.2 True fake: scaffold gap size wrong estimation (local) 67603084 67603829 290606 289861 NC_000014.9 scf7180000172730 99.87 True fake: scaffold gap size wrong estimation (local) 67600852 67603059 292959 290752 NC_000014.9 scf7180000172730 99.55 True fake: scaffold gap size wrong estimation (local) 67596365 67600534 297441 293193 NC_000014.9 scf7180000172730 98.98 True fake: scaffold gap size wrong estimation (local) 67595114 67595765 299162 298511 NC_000014.9 scf7180000172730 96.47 True local misassembly 67593492 67594891 300562 299163 NC_000014.9 scf7180000172730 99.5 True fake: scaffold gap size wrong estimation (local) 67590561 67592860 303581 301282 NC_000014.9 scf7180000172730 99.87 True fake: scaffold gap size wrong estimation (local) 67566038 67590261 328292 303875 NC_000014.9 scf7180000172730 98.97 True fake: scaffold gap size wrong estimation (local) 67564746 67565899 329567 328414 NC_000014.9 scf7180000172730 99.91 True fake: scaffold gap size wrong estimation (local) 67561008 67563549 333411 330818 NC_000014.9 scf7180000172730 99.37 True fake: scaffold gap size wrong estimation (local) 67552767 67560743 341638 333631 NC_000014.9 scf7180000172730 98.33 True fake: scaffold gap size wrong estimation (local) 67549512 67552512 344863 341863 NC_000014.9 scf7180000172730 99.83 True fake: scaffold gap size wrong estimation (local) 67548688 67549259 345699 345128 NC_000014.9 scf7180000172730 99.83 True fake: scaffold gap size wrong estimation (local) 67537377 67548478 356918 345860 NC_000014.9 scf7180000172730 99.42 True fake: scaffold gap size wrong estimation (local) 67509791 67536788 385314 357532 NC_000014.9 scf7180000172730 96.13 True fake: scaffold gap size wrong estimation (local) 67508149 67509478 386981 385617 NC_000014.9 scf7180000172730 98.07 True fake: scaffold gap size wrong estimation (local) 67506917 67507988 388130 387059 NC_000014.9 scf7180000172730 99.63 True fake: scaffold gap size wrong estimation (local) 67504149 67506710 391008 388414 NC_000014.9 scf7180000172730 97.8 True fake: scaffold gap size wrong estimation (local) 67502465 67503689 392706 391395 NC_000014.9 scf7180000172730 98.74 True fake: scaffold gap size wrong estimation (local) 67500740 67502218 394278 392806 NC_000014.9 scf7180000172730 99.53 True fake: scaffold gap size wrong estimation (local) 67498998 67500282 396021 394738 NC_000014.9 scf7180000172730 99.46 True fake: scaffold gap size wrong estimation (local) 67497063 67498827 397942 396178 NC_000014.9 scf7180000172730 98.47 True fake: scaffold gap size wrong estimation (local) 67495685 67496343 399292 398634 NC_000014.9 scf7180000172730 99.85 True indel: indel (<= 5bp) 67489962 67495611 405012 399363 NC_000014.9 scf7180000172730 99.96 True fake: scaffold gap size wrong estimation (local) 67486526 67489769 408396 405153 NC_000014.9 scf7180000172730 99.94 True fake: scaffold gap size wrong estimation (local) 67479640 67486354 415272 408558 NC_000014.9 scf7180000172730 99.82 True fake: scaffold gap size wrong estimation (local) 67477158 67479176 417722 415704 NC_000014.9 scf7180000172730 100.0 True fake: scaffold gap size wrong estimation (local) 67475601 67476418 419291 418474 NC_000014.9 scf7180000172730 100.0 True indel: indel (<= 5bp) 67474614 67475538 420255 419359 NC_000014.9 scf7180000172730 96.46 True CONTIG scf7180000172730 420255 correct 72099329 72100399 1079 9 NC_000014.9 scf7180000172731 97.67 True indel: indel (> 5bp) 72096181 72099259 4158 1080 NC_000014.9 scf7180000172731 99.19 True local misassembly 72093038 72096081 7202 4159 NC_000014.9 scf7180000172731 99.8 True fake: scaffold gap size wrong estimation (local) 72091137 72092001 8949 8085 NC_000014.9 scf7180000172731 99.42 True indel: indel (<= 5bp) 72090414 72091005 9676 9085 NC_000014.9 scf7180000172731 99.32 True fake: scaffold gap size wrong estimation (local) 72087629 72090117 13318 10830 NC_000014.9 scf7180000172731 99.92 True fake: scaffold gap size wrong estimation (local) 72085874 72087330 15100 13644 NC_000014.9 scf7180000172731 99.59 True fake: scaffold gap size wrong estimation (local) 72080995 72085651 19968 15312 NC_000014.9 scf7180000172731 99.96 True fake: scaffold gap size wrong estimation (local) 72072407 72082152 29715 20114 NC_000014.9 scf7180000172731 98.42 True fake: scaffold gap size wrong estimation (local) 72069753 72072315 32350 29788 NC_000014.9 scf7180000172731 99.8 True fake: scaffold gap size wrong estimation (local) 72057328 72068413 44621 33685 NC_000014.9 scf7180000172731 97.97 True fake: scaffold gap size wrong estimation (local) 72053355 72057101 48514 44773 NC_000014.9 scf7180000172731 99.76 True fake: scaffold gap size wrong estimation (local) 72042341 72052952 59355 48874 NC_000014.9 scf7180000172731 98.51 True fake: scaffold gap size wrong estimation (local) 72021849 72042137 79922 59568 NC_000014.9 scf7180000172731 99.69 True fake: scaffold gap size wrong estimation (local) 71987545 72021578 114182 80118 NC_000014.9 scf7180000172731 99.57 True relocation, inconsistency = -4134635 76119938 76122179 116422 114183 NC_000014.9 scf7180000172731 99.74 True fake: scaffold gap size wrong estimation (local) 76097587 76119309 138728 116995 NC_000014.9 scf7180000172731 99.67 True fake: scaffold gap size wrong estimation (local) 76067580 76097399 168637 138863 NC_000014.9 scf7180000172731 99.61 True fake: scaffold gap size wrong estimation (local) 76062949 76067381 173210 168778 NC_000014.9 scf7180000172731 99.73 True fake: scaffold gap size wrong estimation (local) 76036616 76062156 199564 173968 NC_000014.9 scf7180000172731 99.7 True fake: scaffold gap size wrong estimation (local) 76027709 76036420 208395 199679 NC_000014.9 scf7180000172731 99.93 True fake: scaffold gap size wrong estimation (local) 76026534 76027312 209578 208800 NC_000014.9 scf7180000172731 97.3 True fake: scaffold gap size wrong estimation (local) 76025474 76026204 210592 209862 NC_000014.9 scf7180000172731 100.0 True indel: stretch of mismatches 76022173 76025367 213893 210699 NC_000014.9 scf7180000172731 99.84 True fake: scaffold gap size wrong estimation (local) 76004037 76021997 231962 214009 NC_000014.9 scf7180000172731 99.88 True fake: scaffold gap size wrong estimation (local) 76002190 76003448 233757 232499 NC_000014.9 scf7180000172731 99.84 True fake: scaffold gap size wrong estimation (local) 75991346 76002035 244793 234028 NC_000014.9 scf7180000172731 99.4 True fake: scaffold gap size wrong estimation (local) 75988716 75991278 247470 244908 NC_000014.9 scf7180000172731 100.0 True fake: scaffold gap size wrong estimation (local) 75974064 75988555 261974 247588 NC_000014.9 scf7180000172731 98.82 True fake: scaffold gap size wrong estimation (local) 75970651 75973956 265485 262180 NC_000014.9 scf7180000172731 99.82 True fake: scaffold gap size wrong estimation (local) 75964107 75970322 272058 265843 NC_000014.9 scf7180000172731 99.94 True fake: scaffold gap size wrong estimation (local) 75960165 75963928 275935 272172 NC_000014.9 scf7180000172731 99.87 True fake: scaffold gap size wrong estimation (local) 75955953 75959578 280067 276442 NC_000014.9 scf7180000172731 100.0 True fake: scaffold gap size wrong estimation (local) 75954270 75955726 281719 280263 NC_000014.9 scf7180000172731 100.0 True fake: scaffold gap size wrong estimation (local) 75942184 75953995 293695 281890 NC_000014.9 scf7180000172731 97.95 True fake: scaffold gap size wrong estimation (local) 75940354 75941860 295499 293993 NC_000014.9 scf7180000172731 99.93 True fake: scaffold gap size wrong estimation (local) 75937351 75939626 298633 296249 NC_000014.9 scf7180000172731 96.03 True fake: scaffold gap size wrong estimation (local) 75929680 75937166 306267 298781 NC_000014.9 scf7180000172731 99.8 True fake: scaffold gap size wrong estimation (local) 75925973 75929451 310031 306433 NC_000014.9 scf7180000172731 96.97 True fake: scaffold gap size wrong estimation (local) 75919244 75920582 317733 316335 NC_000014.9 scf7180000172731 96.31 True fake: scaffold gap size wrong estimation (local) 75914904 75918957 322091 318015 NC_000014.9 scf7180000172731 99.65 True fake: scaffold gap size wrong estimation (local) 75914108 75914633 322799 322274 NC_000014.9 scf7180000172731 100.0 True fake: scaffold gap size wrong estimation (local) 75893851 75913981 342980 322945 NC_000014.9 scf7180000172731 99.32 True fake: scaffold gap size wrong estimation (local) 75890944 75893561 346001 343384 NC_000014.9 scf7180000172731 99.89 True local misassembly 75889826 75890826 347002 346002 NC_000014.9 scf7180000172731 97.9 True fake: scaffold gap size wrong estimation (local) 75888936 75889825 348053 347164 NC_000014.9 scf7180000172731 95.96 True local misassembly 75885364 75888820 351510 348054 NC_000014.9 scf7180000172731 99.07 True fake: scaffold gap size wrong estimation (local) 75875380 75884923 361497 351943 NC_000014.9 scf7180000172731 99.76 True fake: scaffold gap size wrong estimation (local) 75874354 75874933 362544 361965 NC_000014.9 scf7180000172731 99.83 True fake: scaffold gap size wrong estimation (local) 75870994 75872802 365791 363983 NC_000014.9 scf7180000172731 98.78 True local misassembly 75870265 75870822 366349 365792 NC_000014.9 scf7180000172731 97.67 True fake: scaffold gap size wrong estimation (local) 75867781 75869834 369036 366922 NC_000014.9 scf7180000172731 98.04 True fake: scaffold gap size wrong estimation (local) 75856826 75867538 379954 369231 NC_000014.9 scf7180000172731 99.81 True fake: scaffold gap size wrong estimation (local) 75850411 75856109 386235 380554 NC_000014.9 scf7180000172731 98.52 True fake: scaffold gap size wrong estimation (local) 75846800 75850143 389776 386464 NC_000014.9 scf7180000172731 99.02 True fake: scaffold gap size wrong estimation (local) 75838534 75846536 398014 390001 NC_000014.9 scf7180000172731 99.6 True fake: scaffold gap size wrong estimation (local) 75818690 75838297 417903 398262 NC_000014.9 scf7180000172731 99.86 True fake: scaffold gap size wrong estimation (local) 75817251 75817841 419553 418963 NC_000014.9 scf7180000172731 100.0 True relocation, scaffold gap is present, inconsistency = 21255851 54555040 54561379 419574 425917 NC_000014.9 scf7180000172731 99.13 True fake: scaffold gap size wrong estimation (local) 54561625 54596329 426190 460760 NC_000014.9 scf7180000172731 99.42 True fake: scaffold gap size wrong estimation (local) 54596462 54597106 460901 461545 NC_000014.9 scf7180000172731 100.0 True fake: scaffold gap size wrong estimation (local) 54597604 54602690 461974 467262 NC_000014.9 scf7180000172731 96.34 True relocation, inconsistency = 21394163 33200217 33203440 470487 467263 NC_000014.9 scf7180000172731 99.82 True CONTIG scf7180000172731 470487 misassembled 49592842 49593447 1225 1830 NC_000014.9 scf7180000172732 99.5 True local misassembly 49593691 49595811 1831 3951 NC_000014.9 scf7180000172732 99.06 True fake: scaffold gap size wrong estimation (local) 49595915 49599792 4091 7917 NC_000014.9 scf7180000172732 97.75 True fake: scaffold gap size wrong estimation (local) 49599924 49602041 8019 10163 NC_000014.9 scf7180000172732 99.67 True fake: scaffold gap size wrong estimation (local) 49602165 49602959 10306 11100 NC_000014.9 scf7180000172732 99.87 True fake: scaffold gap size wrong estimation (local) 49604154 49606400 12222 14467 NC_000014.9 scf7180000172732 99.69 True fake: scaffold gap size wrong estimation (local) 49607051 49608903 15083 16935 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49611682 49612955 20093 21366 NC_000014.9 scf7180000172732 99.92 True fake: scaffold gap size wrong estimation (local) 49613722 49626231 22055 34550 NC_000014.9 scf7180000172732 99.29 True fake: scaffold gap size wrong estimation (local) 49627085 49627608 35439 35962 NC_000014.9 scf7180000172732 100.0 True local misassembly 49627792 49628503 35963 36674 NC_000014.9 scf7180000172732 97.19 True fake: scaffold gap size wrong estimation (local) 49628504 49630691 36685 38872 NC_000014.9 scf7180000172732 98.13 True fake: scaffold gap size wrong estimation (local) 49631524 49632461 39710 40647 NC_000014.9 scf7180000172732 99.89 True fake: scaffold gap size wrong estimation (local) 49633193 49635421 41264 43492 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49636122 49637406 44205 45488 NC_000014.9 scf7180000172732 99.92 True fake: scaffold gap size wrong estimation (local) 49637496 49638256 45515 46275 NC_000014.9 scf7180000172732 99.87 True fake: scaffold gap size wrong estimation (local) 49638381 49640437 46538 48636 NC_000014.9 scf7180000172732 98.41 True fake: scaffold gap size wrong estimation (local) 49640652 49642881 48911 51139 NC_000014.9 scf7180000172732 99.96 True fake: scaffold gap size wrong estimation (local) 49643372 49643879 51678 52185 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49644499 49649338 52594 57343 NC_000014.9 scf7180000172732 98.05 True fake: scaffold gap size wrong estimation (local) 49649722 49656100 57672 63852 NC_000014.9 scf7180000172732 96.63 True fake: scaffold gap size wrong estimation (local) 49656357 49656986 64136 64765 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49657556 49658115 65470 66029 NC_000014.9 scf7180000172732 97.14 True fake: scaffold gap size wrong estimation (local) 49658278 49659155 66055 66932 NC_000014.9 scf7180000172732 99.43 True fake: scaffold gap size wrong estimation (local) 49659334 49660741 67371 68778 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49661097 49663773 69047 71723 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49664350 49666946 72275 74869 NC_000014.9 scf7180000172732 99.34 True fake: scaffold gap size wrong estimation (local) 49667185 49668027 75143 76006 NC_000014.9 scf7180000172732 99.88 True fake: scaffold gap size wrong estimation (local) 49668466 49670125 76194 77853 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49670328 49671441 78189 79302 NC_000014.9 scf7180000172732 100.0 True local misassembly 49671781 49672515 79303 80037 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 49672770 49674692 80287 82209 NC_000014.9 scf7180000172732 100.0 True fake: not a misassembly (possible transposable element) 33953393 33955012 83853 82234 NC_000014.9 scf7180000172732 99.63 True fake: not a misassembly (possible transposable element) 49675878 49678082 84241 86445 NC_000014.9 scf7180000172732 99.09 True fake: scaffold gap size wrong estimation (local) 49678518 49681520 86879 89853 NC_000014.9 scf7180000172732 98.66 True fake: scaffold gap size wrong estimation (local) 49682666 49684247 90941 92522 NC_000014.9 scf7180000172732 99.62 True fake: scaffold gap size wrong estimation (local) 49684852 49689168 93198 97658 NC_000014.9 scf7180000172732 98.45 True fake: scaffold gap size wrong estimation (local) 49689623 49690235 98109 98721 NC_000014.9 scf7180000172732 99.84 True fake: scaffold gap size wrong estimation (local) 49690515 49695877 98957 104372 NC_000014.9 scf7180000172732 99.09 True fake: not a misassembly (possible transposable element) 90708156 90708836 105073 104393 NC_000014.9 scf7180000172732 99.85 True fake: not a misassembly (possible transposable element) 49696200 49696799 105074 105673 NC_000014.9 scf7180000172732 99.84 True relocation, scaffold gap is present, inconsistency = 41009614 90706434 90707897 107157 105694 NC_000014.9 scf7180000172732 99.8 True fake: scaffold gap size wrong estimation (local) 90688819 90706176 124316 107603 NC_000014.9 scf7180000172732 95.91 True fake: scaffold gap size wrong estimation (local) 90669858 90688296 143216 124770 NC_000014.9 scf7180000172732 99.91 True fake: not a misassembly (possible transposable element) 104271608 104272953 143217 144562 NC_000014.9 scf7180000172732 100.0 True fake: not a misassembly (possible transposable element) 90666358 90670036 148275 144583 NC_000014.9 scf7180000172732 99.92 True fake: scaffold gap size wrong estimation (local) 90643828 90666223 170697 148393 NC_000014.9 scf7180000172732 99.41 True fake: scaffold gap size wrong estimation (local) 90636438 90643726 178058 170803 NC_000014.9 scf7180000172732 99.39 True fake: scaffold gap size wrong estimation (local) 90634024 90635563 180376 178837 NC_000014.9 scf7180000172732 98.31 True fake: scaffold gap size wrong estimation (local) 90631433 90634023 183280 180690 NC_000014.9 scf7180000172732 99.77 True fake: scaffold gap size wrong estimation (local) 90622363 90630837 192820 184330 NC_000014.9 scf7180000172732 99.8 True local misassembly 90599051 90622148 215971 192898 NC_000014.9 scf7180000172732 99.87 True fake: scaffold gap size wrong estimation (local) 90595259 90598891 219786 216154 NC_000014.9 scf7180000172732 99.97 True fake: scaffold gap size wrong estimation (local) 90592675 90595083 222341 219933 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 90586497 90592460 228506 222528 NC_000014.9 scf7180000172732 99.98 True fake: scaffold gap size wrong estimation (local) 90566288 90586400 249124 229153 NC_000014.9 scf7180000172732 99.29 True fake: scaffold gap size wrong estimation (local) 90548998 90566097 266360 249239 NC_000014.9 scf7180000172732 99.77 True indel: indel (<= 5bp) 90542200 90548876 273160 266484 NC_000014.9 scf7180000172732 99.96 True fake: scaffold gap size wrong estimation (local) 90538278 90541969 276993 273302 NC_000014.9 scf7180000172732 99.89 True fake: scaffold gap size wrong estimation (local) 90532074 90537369 284015 278720 NC_000014.9 scf7180000172732 99.96 True fake: scaffold gap size wrong estimation (local) 90530229 90531317 285872 284784 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 90527944 90530072 288120 285992 NC_000014.9 scf7180000172732 99.95 True fake: scaffold gap size wrong estimation (local) 90523612 90527587 292529 288538 NC_000014.9 scf7180000172732 99.9 True fake: scaffold gap size wrong estimation (local) 90516455 90523373 299695 292777 NC_000014.9 scf7180000172732 99.86 True fake: scaffold gap size wrong estimation (local) 90515350 90515963 300776 300163 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 90511283 90515101 304811 300986 NC_000014.9 scf7180000172732 99.71 True fake: scaffold gap size wrong estimation (local) 90507366 90509799 308614 306181 NC_000014.9 scf7180000172732 99.92 True fake: scaffold gap size wrong estimation (local) 90506419 90507328 309996 309087 NC_000014.9 scf7180000172732 97.8 True local misassembly 90505395 90506218 310820 309997 NC_000014.9 scf7180000172732 100.0 True fake: scaffold gap size wrong estimation (local) 90501767 90504317 314408 311858 NC_000014.9 scf7180000172732 99.88 True fake: scaffold gap size wrong estimation (local) 90497116 90501535 318863 314634 NC_000014.9 scf7180000172732 95.66 True fake: scaffold gap size wrong estimation (local) 90493130 90496911 323209 319443 NC_000014.9 scf7180000172732 99.55 True fake: scaffold gap size wrong estimation (local) 90484930 90492564 331325 323691 NC_000014.9 scf7180000172732 99.88 True fake: scaffold gap size wrong estimation (local) 90478714 90484757 337545 331532 NC_000014.9 scf7180000172732 99.37 True CONTIG scf7180000172732 337545 misassembled 58630312 58649101 588 19313 NC_000014.9 scf7180000172733 99.41 True fake: scaffold gap size wrong estimation (local) 58649275 58652813 19566 23084 NC_000014.9 scf7180000172733 99.43 True fake: scaffold gap size wrong estimation (local) 58653144 58655850 23423 26184 NC_000014.9 scf7180000172733 99.59 True fake: scaffold gap size wrong estimation (local) 58656022 58658306 26278 28574 NC_000014.9 scf7180000172733 99.91 True fake: scaffold gap size wrong estimation (local) 58658507 58660534 28772 30799 NC_000014.9 scf7180000172733 99.95 True fake: scaffold gap size wrong estimation (local) 58661599 58674781 31951 45141 NC_000014.9 scf7180000172733 99.95 True fake: scaffold gap size wrong estimation (local) 58674978 58684141 45305 54468 NC_000014.9 scf7180000172733 99.61 True fake: scaffold gap size wrong estimation (local) 58684537 58686811 54908 57182 NC_000014.9 scf7180000172733 99.74 True fake: scaffold gap size wrong estimation (local) 58687028 58689477 57335 59785 NC_000014.9 scf7180000172733 99.8 True fake: scaffold gap size wrong estimation (local) 58689573 58692443 59921 62790 NC_000014.9 scf7180000172733 99.86 True fake: scaffold gap size wrong estimation (local) 58692718 58711067 63033 81415 NC_000014.9 scf7180000172733 99.69 True fake: scaffold gap size wrong estimation (local) 58711228 58714423 81523 84718 NC_000014.9 scf7180000172733 99.91 True fake: scaffold gap size wrong estimation (local) 58714656 58719374 84924 89659 NC_000014.9 scf7180000172733 99.89 True fake: scaffold gap size wrong estimation (local) 58719624 58720146 89954 90476 NC_000014.9 scf7180000172733 100.0 True fake: scaffold gap size wrong estimation (local) 58720426 58727935 90636 98126 NC_000014.9 scf7180000172733 99.64 True fake: scaffold gap size wrong estimation (local) 58728065 58729770 98239 99944 NC_000014.9 scf7180000172733 99.94 True fake: scaffold gap size wrong estimation (local) 58730027 58761416 100153 132178 NC_000014.9 scf7180000172733 98.06 True fake: scaffold gap size wrong estimation (local) 58761765 58763972 132443 134650 NC_000014.9 scf7180000172733 99.95 True fake: scaffold gap size wrong estimation (local) 58764088 58764787 134828 135527 NC_000014.9 scf7180000172733 99.86 True fake: scaffold gap size wrong estimation (local) 58764993 58775838 135637 146476 NC_000014.9 scf7180000172733 99.77 True fake: not a misassembly (possible transposable element) 21231556 21232433 147479 146602 NC_000014.9 scf7180000172733 99.89 True fake: not a misassembly (possible transposable element) 58776006 58781212 147537 152743 NC_000014.9 scf7180000172733 99.88 True fake: scaffold gap size wrong estimation (local) 58781381 58791414 152919 162999 NC_000014.9 scf7180000172733 99.81 True fake: scaffold gap size wrong estimation (local) 58791695 58797562 163239 169121 NC_000014.9 scf7180000172733 99.79 True fake: scaffold gap size wrong estimation (local) 58797813 58802161 169320 173589 NC_000014.9 scf7180000172733 97.98 True fake: scaffold gap size wrong estimation (local) 58802350 58817474 173747 189390 NC_000014.9 scf7180000172733 96.73 True fake: scaffold gap size wrong estimation (local) 58817570 58822168 189521 194120 NC_000014.9 scf7180000172733 99.89 True fake: scaffold gap size wrong estimation (local) 58822431 58823870 194310 195754 NC_000014.9 scf7180000172733 99.31 True fake: scaffold gap size wrong estimation (local) 58824074 58825385 195982 197293 NC_000014.9 scf7180000172733 100.0 True fake: scaffold gap size wrong estimation (local) 58825643 58826160 197533 198050 NC_000014.9 scf7180000172733 100.0 True fake: scaffold gap size wrong estimation (local) 58826323 58831412 198147 203222 NC_000014.9 scf7180000172733 99.65 True fake: scaffold gap size wrong estimation (local) 58831621 58834376 203446 206202 NC_000014.9 scf7180000172733 99.78 True local misassembly 58834530 58836042 206553 208106 NC_000014.9 scf7180000172733 97.23 True fake: scaffold gap size wrong estimation (local) 58836305 58843645 208225 215579 NC_000014.9 scf7180000172733 99.74 True fake: scaffold gap size wrong estimation (local) 58843873 58850737 215764 222724 NC_000014.9 scf7180000172733 98.37 True fake: scaffold gap size wrong estimation (local) 58850994 58854490 222919 226443 NC_000014.9 scf7180000172733 99.6 True fake: scaffold gap size wrong estimation (local) 58854706 58870193 226573 242067 NC_000014.9 scf7180000172733 99.65 True fake: scaffold gap size wrong estimation (local) 58870591 58875204 242411 247041 NC_000014.9 scf7180000172733 99.59 True fake: scaffold gap size wrong estimation (local) 58875663 58890675 247445 262691 NC_000014.9 scf7180000172733 98.17 True fake: scaffold gap size wrong estimation (local) 58890936 58902361 262818 274243 NC_000014.9 scf7180000172733 99.82 True fake: scaffold gap size wrong estimation (local) 58902648 58903482 274499 275333 NC_000014.9 scf7180000172733 99.88 True fake: scaffold gap size wrong estimation (local) 58903939 58927452 275682 299175 NC_000014.9 scf7180000172733 98.82 True fake: not a misassembly (possible transposable element) 37662731 37664110 299196 300575 NC_000014.9 scf7180000172733 100.0 True fake: not a misassembly (possible transposable element) 58928284 58929122 300576 301414 NC_000014.9 scf7180000172733 99.89 True relocation, scaffold gap is present, inconsistency = 18842371 40085202 40085876 302125 301451 NC_000014.9 scf7180000172733 99.7 True CONTIG scf7180000172733 307006 misassembled 74774801 74776952 2162 4313 NC_000014.9 scf7180000172734 100.0 True fake: not a misassembly (possible transposable element) 103871375 103873233 4334 6191 NC_000014.9 scf7180000172734 99.73 True fake: not a misassembly (possible transposable element) 74779053 74779674 6192 6812 NC_000014.9 scf7180000172734 99.69 True relocation, scaffold gap is present, inconsistency = 29094123 103874460 103875599 7475 8614 NC_000014.9 scf7180000172734 99.74 True fake: scaffold gap size wrong estimation (local) 103875930 103876964 9114 10148 NC_000014.9 scf7180000172734 99.9 True fake: scaffold gap size wrong estimation (local) 103877234 103888167 10430 21156 NC_000014.9 scf7180000172734 97.14 True fake: scaffold gap size wrong estimation (local) 103888262 103888849 21246 21833 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103889110 103895182 22113 28144 NC_000014.9 scf7180000172734 98.86 True fake: scaffold gap size wrong estimation (local) 103895879 103900667 29263 34019 NC_000014.9 scf7180000172734 99.1 True fake: scaffold gap size wrong estimation (local) 103903312 103905479 36596 38711 NC_000014.9 scf7180000172734 95.91 True fake: scaffold gap size wrong estimation (local) 103905667 103906984 38842 40159 NC_000014.9 scf7180000172734 99.92 True fake: scaffold gap size wrong estimation (local) 103908169 103910806 41318 43894 NC_000014.9 scf7180000172734 97.63 True relocation, inconsistency = -39268985 64641822 64647243 43895 49316 NC_000014.9 scf7180000172734 99.93 True fake: scaffold gap size wrong estimation (local) 64647477 64648095 49417 50035 NC_000014.9 scf7180000172734 99.84 True fake: scaffold gap size wrong estimation (local) 64648458 64653308 50441 55238 NC_000014.9 scf7180000172734 98.49 True fake: scaffold gap size wrong estimation (local) 64653467 64655520 55407 57478 NC_000014.9 scf7180000172734 98.89 True fake: scaffold gap size wrong estimation (local) 64659096 64661232 60937 63073 NC_000014.9 scf7180000172734 99.91 True fake: scaffold gap size wrong estimation (local) 64661529 64662104 63419 63994 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 64662652 64663800 64435 65582 NC_000014.9 scf7180000172734 99.91 True fake: scaffold gap size wrong estimation (local) 64663978 64664696 65804 66521 NC_000014.9 scf7180000172734 99.44 True fake: scaffold gap size wrong estimation (local) 64664956 64665953 66944 67941 NC_000014.9 scf7180000172734 99.9 True local misassembly 64666172 64666679 67942 68449 NC_000014.9 scf7180000172734 96.06 True indel: indel (<= 5bp) 64666682 64667188 68450 68956 NC_000014.9 scf7180000172734 99.8 True fake: scaffold gap size wrong estimation (local) 64667564 64669675 69482 71593 NC_000014.9 scf7180000172734 99.76 True fake: scaffold gap size wrong estimation (local) 64669938 64675987 71869 77845 NC_000014.9 scf7180000172734 95.62 True fake: scaffold gap size wrong estimation (local) 64676122 64683803 77972 85648 NC_000014.9 scf7180000172734 98.55 True fake: scaffold gap size wrong estimation (local) 64683936 64685213 85780 87057 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 64686829 64687510 88456 89141 NC_000014.9 scf7180000172734 99.42 True fake: scaffold gap size wrong estimation (local) 64687746 64690210 89362 91826 NC_000014.9 scf7180000172734 99.96 True fake: scaffold gap size wrong estimation (local) 64691414 64696975 93456 98845 NC_000014.9 scf7180000172734 96.88 True fake: scaffold gap size wrong estimation (local) 64697208 64711433 99045 113391 NC_000014.9 scf7180000172734 99.74 True fake: scaffold gap size wrong estimation (local) 64711635 64744799 113782 146831 NC_000014.9 scf7180000172734 99.53 True fake: scaffold gap size wrong estimation (local) 64745031 64756378 147021 158103 NC_000014.9 scf7180000172734 96.94 True fake: scaffold gap size wrong estimation (local) 64756525 64780439 158196 182109 NC_000014.9 scf7180000172734 99.96 True fake: scaffold gap size wrong estimation (local) 64780684 64809030 182269 211387 NC_000014.9 scf7180000172734 97.2 True fake: scaffold gap size wrong estimation (local) 64809563 64833544 211782 235858 NC_000014.9 scf7180000172734 99.41 True fake: scaffold gap size wrong estimation (local) 64833453 64854114 236367 256639 NC_000014.9 scf7180000172734 98.01 True fake: scaffold gap size wrong estimation (local) 64854405 64862683 257386 265686 NC_000014.9 scf7180000172734 99.37 True fake: scaffold gap size wrong estimation (local) 64862793 64867658 265782 270641 NC_000014.9 scf7180000172734 99.61 True fake: scaffold gap size wrong estimation (local) 64867876 64882244 270777 285222 NC_000014.9 scf7180000172734 99.55 True fake: scaffold gap size wrong estimation (local) 64882366 64885066 285270 288016 NC_000014.9 scf7180000172734 98.67 True fake: scaffold gap size wrong estimation (local) 64885267 64888077 288127 290938 NC_000014.9 scf7180000172734 99.54 True fake: scaffold gap size wrong estimation (local) 64888246 64892464 291136 295409 NC_000014.9 scf7180000172734 99.55 True fake: scaffold gap size wrong estimation (local) 64893016 64893678 296167 296829 NC_000014.9 scf7180000172734 99.55 True local misassembly 64896753 64900937 296830 301014 NC_000014.9 scf7180000172734 99.26 True fake: scaffold gap size wrong estimation (local) 64901088 64903056 301115 303079 NC_000014.9 scf7180000172734 99.7 True fake: scaffold gap size wrong estimation (local) 64903276 64904936 303350 305010 NC_000014.9 scf7180000172734 99.82 True fake: scaffold gap size wrong estimation (local) 64906548 64908272 306908 308632 NC_000014.9 scf7180000172734 99.83 True fake: scaffold gap size wrong estimation (local) 64908440 64910548 308779 310887 NC_000014.9 scf7180000172734 99.76 True fake: scaffold gap size wrong estimation (local) 64910687 64913434 310910 313828 NC_000014.9 scf7180000172734 97.1 True fake: scaffold gap size wrong estimation (local) 64913793 64917237 314165 317527 NC_000014.9 scf7180000172734 97.56 True fake: scaffold gap size wrong estimation (local) 64917542 64922316 317877 322667 NC_000014.9 scf7180000172734 99.79 True fake: scaffold gap size wrong estimation (local) 64922588 64938447 322847 338694 NC_000014.9 scf7180000172734 98.33 True relocation, scaffold gap is present, inconsistency = 38299127 103237595 103238771 338715 339891 NC_000014.9 scf7180000172734 99.92 True fake: scaffold gap size wrong estimation (local) 103240306 103241789 341383 342866 NC_000014.9 scf7180000172734 99.6 True fake: scaffold gap size wrong estimation (local) 103241790 103243074 343234 344518 NC_000014.9 scf7180000172734 99.38 True fake: scaffold gap size wrong estimation (local) 103243354 103244370 344708 345724 NC_000014.9 scf7180000172734 99.51 True fake: scaffold gap size wrong estimation (local) 103245692 103246745 347103 348156 NC_000014.9 scf7180000172734 99.81 True fake: scaffold gap size wrong estimation (local) 103246852 103248139 348208 349495 NC_000014.9 scf7180000172734 99.69 True fake: scaffold gap size wrong estimation (local) 103248247 103249215 349599 350567 NC_000014.9 scf7180000172734 99.69 True fake: scaffold gap size wrong estimation (local) 103249424 103251613 350772 352961 NC_000014.9 scf7180000172734 99.45 True fake: scaffold gap size wrong estimation (local) 103251857 103253016 353393 354552 NC_000014.9 scf7180000172734 99.91 True local misassembly 103253384 103254060 354553 355229 NC_000014.9 scf7180000172734 96.9 True fake: scaffold gap size wrong estimation (local) 103256394 103257117 357352 358075 NC_000014.9 scf7180000172734 99.45 True fake: scaffold gap size wrong estimation (local) 103257151 103258203 358353 359405 NC_000014.9 scf7180000172734 99.34 True indel: indel (<= 5bp) 103258204 103258944 359407 360147 NC_000014.9 scf7180000172734 98.65 True fake: scaffold gap size wrong estimation (local) 103258945 103259824 360169 361048 NC_000014.9 scf7180000172734 98.75 True fake: scaffold gap size wrong estimation (local) 103260066 103264617 361241 365775 NC_000014.9 scf7180000172734 99.56 True fake: scaffold gap size wrong estimation (local) 103265888 103271645 367332 372933 NC_000014.9 scf7180000172734 96.56 True fake: scaffold gap size wrong estimation (local) 103271668 103272820 373136 374236 NC_000014.9 scf7180000172734 95.06 True fake: scaffold gap size wrong estimation (local) 103273118 103276209 374555 377646 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103276425 103277480 378087 379142 NC_000014.9 scf7180000172734 100.0 True local misassembly 103277704 103278577 379143 380016 NC_000014.9 scf7180000172734 97.71 True fake: scaffold gap size wrong estimation (local) 103279310 103280206 380849 381745 NC_000014.9 scf7180000172734 99.89 True fake: scaffold gap size wrong estimation (local) 103280360 103281178 381859 382677 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103281325 103285603 382810 387191 NC_000014.9 scf7180000172734 97.81 True fake: scaffold gap size wrong estimation (local) 103285748 103289262 387276 390805 NC_000014.9 scf7180000172734 99.46 True fake: scaffold gap size wrong estimation (local) 103289811 103291627 391404 393220 NC_000014.9 scf7180000172734 98.84 True local misassembly 103292075 103295795 393221 396941 NC_000014.9 scf7180000172734 99.97 True fake: scaffold gap size wrong estimation (local) 103295954 103296481 397192 397719 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103297029 103297740 398167 398878 NC_000014.9 scf7180000172734 99.86 True local misassembly 103298101 103298924 399066 399978 NC_000014.9 scf7180000172734 97.28 True fake: scaffold gap size wrong estimation (local) 103299082 103299881 400072 400871 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103301842 103302536 402862 403556 NC_000014.9 scf7180000172734 99.86 True fake: scaffold gap size wrong estimation (local) 103302666 103303798 403582 404938 NC_000014.9 scf7180000172734 99.73 True fake: scaffold gap size wrong estimation (local) 103304048 103306448 405095 407495 NC_000014.9 scf7180000172734 99.71 True fake: scaffold gap size wrong estimation (local) 103306758 103308155 407920 409317 NC_000014.9 scf7180000172734 98.5 True fake: scaffold gap size wrong estimation (local) 103309033 103310083 410152 411202 NC_000014.9 scf7180000172734 99.71 True fake: scaffold gap size wrong estimation (local) 103310335 103313082 411474 414221 NC_000014.9 scf7180000172734 99.89 True fake: scaffold gap size wrong estimation (local) 103313549 103317889 414672 418981 NC_000014.9 scf7180000172734 96.83 True fake: scaffold gap size wrong estimation (local) 103318086 103319938 419303 421155 NC_000014.9 scf7180000172734 99.89 True fake: scaffold gap size wrong estimation (local) 103320074 103320830 421287 422043 NC_000014.9 scf7180000172734 99.87 True fake: scaffold gap size wrong estimation (local) 103320930 103324277 422130 425477 NC_000014.9 scf7180000172734 99.94 True fake: scaffold gap size wrong estimation (local) 103324451 103325468 425641 426658 NC_000014.9 scf7180000172734 99.71 True fake: scaffold gap size wrong estimation (local) 103325719 103329426 426885 430553 NC_000014.9 scf7180000172734 98.75 True fake: scaffold gap size wrong estimation (local) 103329567 103331128 430721 432280 NC_000014.9 scf7180000172734 99.74 True fake: scaffold gap size wrong estimation (local) 103331381 103332896 432461 433976 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103333151 103334674 434219 435742 NC_000014.9 scf7180000172734 99.93 True fake: scaffold gap size wrong estimation (local) 103334777 103345601 435844 446668 NC_000014.9 scf7180000172734 99.96 True fake: scaffold gap size wrong estimation (local) 103346250 103347931 447169 448850 NC_000014.9 scf7180000172734 98.69 True fake: scaffold gap size wrong estimation (local) 103347932 103349355 449691 451114 NC_000014.9 scf7180000172734 99.65 True fake: scaffold gap size wrong estimation (local) 103349689 103351080 451234 452625 NC_000014.9 scf7180000172734 99.93 True fake: scaffold gap size wrong estimation (local) 103352190 103353223 453722 454755 NC_000014.9 scf7180000172734 100.0 True local misassembly 103353316 103353830 454756 455270 NC_000014.9 scf7180000172734 95.73 True fake: scaffold gap size wrong estimation (local) 103354097 103355130 455807 456840 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103355407 103356723 456911 458227 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103359720 103361028 461265 462573 NC_000014.9 scf7180000172734 99.92 True fake: scaffold gap size wrong estimation (local) 103361156 103363586 462659 465152 NC_000014.9 scf7180000172734 97.94 True fake: scaffold gap size wrong estimation (local) 103363669 103366132 465332 467690 NC_000014.9 scf7180000172734 95.54 True fake: scaffold gap size wrong estimation (local) 103366681 103367513 468514 469346 NC_000014.9 scf7180000172734 99.64 True local misassembly 103367916 103368713 469347 470144 NC_000014.9 scf7180000172734 97.37 True fake: scaffold gap size wrong estimation (local) 103369428 103370396 471361 472343 NC_000014.9 scf7180000172734 99.9 True fake: scaffold gap size wrong estimation (local) 103370909 103371478 472517 473086 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103372476 103373403 474471 475422 NC_000014.9 scf7180000172734 99.46 True fake: scaffold gap size wrong estimation (local) 103373501 103374201 475601 476301 NC_000014.9 scf7180000172734 100.0 True fake: scaffold gap size wrong estimation (local) 103374523 103377292 476546 479382 NC_000014.9 scf7180000172734 97.48 True fake: scaffold gap size wrong estimation (local) 103377484 103380604 479482 482588 NC_000014.9 scf7180000172734 99.46 True fake: scaffold gap size wrong estimation (local) 103380720 103387651 482690 489476 NC_000014.9 scf7180000172734 97.64 True fake: scaffold gap size wrong estimation (local) 103388119 103389165 489920 490966 NC_000014.9 scf7180000172734 97.9 True fake: scaffold gap size wrong estimation (local) 103390467 103391594 492338 493465 NC_000014.9 scf7180000172734 99.73 True local misassembly 103391797 103392879 493466 494548 NC_000014.9 scf7180000172734 97.78 True fake: scaffold gap size wrong estimation (local) 103393859 103394836 495656 496633 NC_000014.9 scf7180000172734 99.9 True relocation, scaffold gap is present, inconsistency = -15566163 87828769 87850117 496729 518071 NC_000014.9 scf7180000172734 99.91 True fake: scaffold gap size wrong estimation (local) 87850949 87852084 518922 520057 NC_000014.9 scf7180000172734 100.0 True relocation, inconsistency = 16177359 71672523 71673589 521124 520058 NC_000014.9 scf7180000172734 100.0 True CONTIG scf7180000172734 521124 misassembled 66878730 66893293 1 14703 NC_000014.9 scf7180000172735 99.29 True fake: scaffold gap size wrong estimation (local) 66895149 66900845 16533 22174 NC_000014.9 scf7180000172735 98.5 True fake: scaffold gap size wrong estimation (local) 66901073 66919827 22288 41035 NC_000014.9 scf7180000172735 99.9 True fake: scaffold gap size wrong estimation (local) 66920602 66921109 41839 42346 NC_000014.9 scf7180000172735 100.0 True fake: scaffold gap size wrong estimation (local) 66921453 66927237 42529 48313 NC_000014.9 scf7180000172735 99.97 True fake: scaffold gap size wrong estimation (local) 66927345 66929811 48422 50926 NC_000014.9 scf7180000172735 98.95 True fake: scaffold gap size wrong estimation (local) 66930541 66950953 51793 72151 NC_000014.9 scf7180000172735 99.33 True fake: scaffold gap size wrong estimation (local) 66951101 66955911 72273 77103 NC_000014.9 scf7180000172735 99.01 True fake: scaffold gap size wrong estimation (local) 66957323 66972125 78309 93090 NC_000014.9 scf7180000172735 99.48 True fake: scaffold gap size wrong estimation (local) 66972275 66977168 93174 98091 NC_000014.9 scf7180000172735 99.94 True fake: scaffold gap size wrong estimation (local) 66977405 66980855 98234 101684 NC_000014.9 scf7180000172735 100.0 True fake: scaffold gap size wrong estimation (local) 66980974 66997155 101849 118042 NC_000014.9 scf7180000172735 99.89 True fake: scaffold gap size wrong estimation (local) 66997381 67008242 118150 129009 NC_000014.9 scf7180000172735 99.98 True fake: scaffold gap size wrong estimation (local) 67008400 67009848 129109 130557 NC_000014.9 scf7180000172735 100.0 True fake: scaffold gap size wrong estimation (local) 67010626 67029453 131299 150021 NC_000014.9 scf7180000172735 99.11 True fake: scaffold gap size wrong estimation (local) 67029609 67041662 150119 162085 NC_000014.9 scf7180000172735 99.21 True fake: scaffold gap size wrong estimation (local) 67043368 67047345 163622 167486 NC_000014.9 scf7180000172735 97.05 True fake: scaffold gap size wrong estimation (local) 67047439 67049349 167620 169530 NC_000014.9 scf7180000172735 99.9 True fake: scaffold gap size wrong estimation (local) 67049784 67053283 169961 173460 NC_000014.9 scf7180000172735 99.94 True fake: scaffold gap size wrong estimation (local) 67053491 67062761 173590 182523 NC_000014.9 scf7180000172735 96.01 True relocation, scaffold gap is present, inconsistency = -39814634 27250835 27256310 185231 190706 NC_000014.9 scf7180000172735 99.93 True fake: scaffold gap size wrong estimation (local) 27256381 27264560 191110 199289 NC_000014.9 scf7180000172735 99.82 True fake: scaffold gap size wrong estimation (local) 27265719 27289736 200460 224229 NC_000014.9 scf7180000172735 98.88 True fake: scaffold gap size wrong estimation (local) 27289786 27299079 224440 233624 NC_000014.9 scf7180000172735 98.59 True fake: scaffold gap size wrong estimation (local) 27299241 27301483 233718 235960 NC_000014.9 scf7180000172735 99.96 True fake: scaffold gap size wrong estimation (local) 27301590 27323868 236063 258537 NC_000014.9 scf7180000172735 99.25 True fake: scaffold gap size wrong estimation (local) 27323966 27350767 258626 285426 NC_000014.9 scf7180000172735 99.86 True fake: scaffold gap size wrong estimation (local) 27351605 27357580 286159 292142 NC_000014.9 scf7180000172735 99.57 True fake: scaffold gap size wrong estimation (local) 27362708 27371226 298769 307319 NC_000014.9 scf7180000172735 99.41 True indel: indel (> 5bp) 27371326 27409022 307425 345304 NC_000014.9 scf7180000172735 99.31 True fake: scaffold gap size wrong estimation (local) 27409320 27421705 345559 358172 NC_000014.9 scf7180000172735 98.38 True fake: scaffold gap size wrong estimation (local) 27422910 27445631 360021 382497 NC_000014.9 scf7180000172735 98.67 True fake: not a misassembly (possible transposable element) 52064602 52065276 383219 382545 NC_000014.9 scf7180000172735 100.0 True fake: not a misassembly (possible transposable element) 27445600 27447016 383220 384636 NC_000014.9 scf7180000172735 99.93 True local misassembly 27447280 27448818 384688 386226 NC_000014.9 scf7180000172735 98.64 True fake: not a misassembly (possible transposable element) 87502905 87504246 388085 386744 NC_000014.9 scf7180000172735 100.0 True fake: not a misassembly (possible transposable element) 27448885 27458989 388125 398132 NC_000014.9 scf7180000172735 98.9 True fake: scaffold gap size wrong estimation (local) 27462426 27492669 400250 431676 NC_000014.9 scf7180000172735 95.62 True fake: scaffold gap size wrong estimation (local) 27494694 27496767 433461 435534 NC_000014.9 scf7180000172735 99.86 True fake: scaffold gap size wrong estimation (local) 27496965 27518349 435651 457537 NC_000014.9 scf7180000172735 96.83 True fake: scaffold gap size wrong estimation (local) 27518550 27524666 457621 463741 NC_000014.9 scf7180000172735 99.75 True fake: scaffold gap size wrong estimation (local) 27524855 27532702 464273 472175 NC_000014.9 scf7180000172735 99.44 True fake: scaffold gap size wrong estimation (local) 27533659 27534886 473525 474752 NC_000014.9 scf7180000172735 99.92 True relocation, scaffold gap is present, inconsistency = 62437492 89972399 89973817 476191 474773 NC_000014.9 scf7180000172735 100.0 True CONTIG scf7180000172735 476211 misassembled 71131937 71143128 11170 1 NC_000014.9 scf7180000172736 99.69 True fake: scaffold gap size wrong estimation (local) 71127205 71131748 16133 11553 NC_000014.9 scf7180000172736 98.84 True fake: scaffold gap size wrong estimation (local) 71124821 71127111 18893 16600 NC_000014.9 scf7180000172736 99.17 True fake: scaffold gap size wrong estimation (local) 71120495 71124333 23241 19381 NC_000014.9 scf7180000172736 99.35 True fake: scaffold gap size wrong estimation (local) 71119700 71120367 24007 23341 NC_000014.9 scf7180000172736 99.7 True fake: scaffold gap size wrong estimation (local) 71104924 71119439 38863 24281 NC_000014.9 scf7180000172736 99.78 True fake: scaffold gap size wrong estimation (local) 71102410 71104735 41331 39006 NC_000014.9 scf7180000172736 100.0 True fake: not a misassembly (possible transposable element) 92414614 92415503 41332 42221 NC_000014.9 scf7180000172736 99.89 True fake: not a misassembly (possible transposable element) 71099370 71102486 45371 42255 NC_000014.9 scf7180000172736 97.95 True fake: scaffold gap size wrong estimation (local) 71085144 71098533 59538 46146 NC_000014.9 scf7180000172736 99.87 True fake: scaffold gap size wrong estimation (local) 71081680 71082635 62804 61849 NC_000014.9 scf7180000172736 97.07 True fake: scaffold gap size wrong estimation (local) 71068243 71079802 76474 64601 NC_000014.9 scf7180000172736 97.45 True fake: scaffold gap size wrong estimation (local) 71066977 71068175 77712 76514 NC_000014.9 scf7180000172736 99.75 True fake: scaffold gap size wrong estimation (local) 71062480 71065784 82221 78917 NC_000014.9 scf7180000172736 99.91 True fake: scaffold gap size wrong estimation (local) 71051198 71062366 93434 82324 NC_000014.9 scf7180000172736 99.24 True fake: scaffold gap size wrong estimation (local) 71040642 71050909 103911 93658 NC_000014.9 scf7180000172736 99.81 True fake: scaffold gap size wrong estimation (local) 71035832 71036872 108649 107609 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 71021369 71035498 123010 108884 NC_000014.9 scf7180000172736 99.94 True fake: scaffold gap size wrong estimation (local) 71012834 71020130 131679 124486 NC_000014.9 scf7180000172736 98.5 True fake: scaffold gap size wrong estimation (local) 71008677 71012627 135858 131908 NC_000014.9 scf7180000172736 99.97 True fake: scaffold gap size wrong estimation (local) 71000796 71008453 143617 135976 NC_000014.9 scf7180000172736 99.12 True fake: scaffold gap size wrong estimation (local) 70993339 71000578 150988 143780 NC_000014.9 scf7180000172736 99.52 True fake: scaffold gap size wrong estimation (local) 70991436 70993138 152903 151201 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70990550 70991221 153690 153019 NC_000014.9 scf7180000172736 99.85 True fake: scaffold gap size wrong estimation (local) 70985427 70990308 158771 153871 NC_000014.9 scf7180000172736 99.98 True fake: scaffold gap size wrong estimation (local) 70983572 70985262 160542 158862 NC_000014.9 scf7180000172736 99.16 True fake: scaffold gap size wrong estimation (local) 70976635 70983395 167408 160646 NC_000014.9 scf7180000172736 99.93 True fake: scaffold gap size wrong estimation (local) 70974386 70976375 169560 167571 NC_000014.9 scf7180000172736 98.79 True local misassembly 70973254 70974252 170559 169561 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70971343 70973253 172760 170850 NC_000014.9 scf7180000172736 95.87 True local misassembly 70970005 70971119 173875 172761 NC_000014.9 scf7180000172736 100.0 True indel: indel (<= 5bp) 70965668 70970004 178216 173880 NC_000014.9 scf7180000172736 99.95 True fake: scaffold gap size wrong estimation (local) 70961454 70965485 182390 178359 NC_000014.9 scf7180000172736 99.98 True fake: scaffold gap size wrong estimation (local) 70953927 70958903 187987 183018 NC_000014.9 scf7180000172736 99.8 True fake: scaffold gap size wrong estimation (local) 70943335 70953672 198436 188090 NC_000014.9 scf7180000172736 99.52 True fake: scaffold gap size wrong estimation (local) 70932874 70936170 210479 207183 NC_000014.9 scf7180000172736 99.97 True fake: scaffold gap size wrong estimation (local) 70912231 70932662 231144 210720 NC_000014.9 scf7180000172736 99.42 True fake: scaffold gap size wrong estimation (local) 70903360 70912088 239817 231239 NC_000014.9 scf7180000172736 98.1 True fake: scaffold gap size wrong estimation (local) 70900872 70902715 242363 240520 NC_000014.9 scf7180000172736 99.89 True fake: scaffold gap size wrong estimation (local) 70880817 70900661 262548 242520 NC_000014.9 scf7180000172736 99.31 True fake: scaffold gap size wrong estimation (local) 70878358 70880668 264992 262682 NC_000014.9 scf7180000172736 99.87 True fake: scaffold gap size wrong estimation (local) 70874485 70877107 268809 266072 NC_000014.9 scf7180000172736 96.26 True fake: scaffold gap size wrong estimation (local) 70870000 70873642 273265 269623 NC_000014.9 scf7180000172736 99.86 True fake: scaffold gap size wrong estimation (local) 70858299 70869733 284799 273458 NC_000014.9 scf7180000172736 98.5 True fake: scaffold gap size wrong estimation (local) 70855454 70858025 287598 285027 NC_000014.9 scf7180000172736 99.88 True fake: scaffold gap size wrong estimation (local) 70854511 70855453 288874 287932 NC_000014.9 scf7180000172736 99.68 True fake: scaffold gap size wrong estimation (local) 70851997 70853123 290566 289440 NC_000014.9 scf7180000172736 99.38 True fake: scaffold gap size wrong estimation (local) 70851298 70851996 291502 290804 NC_000014.9 scf7180000172736 96.57 True fake: scaffold gap size wrong estimation (local) 70848895 70850852 293797 291840 NC_000014.9 scf7180000172736 98.72 True fake: scaffold gap size wrong estimation (local) 70847122 70848320 295311 294113 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70844788 70847155 298464 296097 NC_000014.9 scf7180000172736 99.83 True fake: scaffold gap size wrong estimation (local) 70842261 70844566 300992 298667 NC_000014.9 scf7180000172736 99.91 True fake: not a misassembly (possible transposable element) 104813375 104814707 302345 301013 NC_000014.9 scf7180000172736 99.85 True fake: not a misassembly (possible transposable element) 70839895 70841231 304168 302832 NC_000014.9 scf7180000172736 97.16 True fake: scaffold gap size wrong estimation (local) 70833517 70839259 310456 304736 NC_000014.9 scf7180000172736 99.43 True fake: scaffold gap size wrong estimation (local) 70828819 70833307 315168 310602 NC_000014.9 scf7180000172736 98.57 True fake: scaffold gap size wrong estimation (local) 70826450 70828697 317532 315284 NC_000014.9 scf7180000172736 99.69 True fake: scaffold gap size wrong estimation (local) 70824442 70825348 319414 318508 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70816297 70824256 327530 319524 NC_000014.9 scf7180000172736 99.62 True fake: scaffold gap size wrong estimation (local) 70798753 70816208 344893 327672 NC_000014.9 scf7180000172736 97.98 True fake: scaffold gap size wrong estimation (local) 70795957 70797557 347693 346093 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70776122 70794873 367501 348706 NC_000014.9 scf7180000172736 99.08 True fake: scaffold gap size wrong estimation (local) 70775014 70775963 368593 367644 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70764702 70774439 378985 369156 NC_000014.9 scf7180000172736 99.13 True fake: scaffold gap size wrong estimation (local) 70754731 70763930 388782 379644 NC_000014.9 scf7180000172736 99.27 True fake: scaffold gap size wrong estimation (local) 70748124 70754514 395329 388945 NC_000014.9 scf7180000172736 99.7 True fake: scaffold gap size wrong estimation (local) 70743951 70747969 399529 395511 NC_000014.9 scf7180000172736 99.83 True fake: scaffold gap size wrong estimation (local) 70741353 70743390 402181 400083 NC_000014.9 scf7180000172736 98.88 True fake: scaffold gap size wrong estimation (local) 70722363 70741147 421129 402358 NC_000014.9 scf7180000172736 99.71 True fake: scaffold gap size wrong estimation (local) 70718264 70722227 425322 421270 NC_000014.9 scf7180000172736 99.87 True fake: scaffold gap size wrong estimation (local) 70716328 70718154 427276 425450 NC_000014.9 scf7180000172736 99.84 True fake: scaffold gap size wrong estimation (local) 70710998 70716097 432609 427493 NC_000014.9 scf7180000172736 99.88 True fake: scaffold gap size wrong estimation (local) 70703551 70710629 439974 432897 NC_000014.9 scf7180000172736 99.9 True fake: scaffold gap size wrong estimation (local) 70695398 70703371 448033 440127 NC_000014.9 scf7180000172736 98.85 True fake: scaffold gap size wrong estimation (local) 70693033 70695223 450365 448175 NC_000014.9 scf7180000172736 99.86 True fake: scaffold gap size wrong estimation (local) 70691766 70692767 451597 450596 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70688859 70691122 454444 452181 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70680324 70687938 462953 455339 NC_000014.9 scf7180000172736 99.97 True fake: scaffold gap size wrong estimation (local) 70679784 70680323 463967 463428 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70669100 70679374 474330 464080 NC_000014.9 scf7180000172736 98.58 True fake: scaffold gap size wrong estimation (local) 70664718 70668687 478702 474736 NC_000014.9 scf7180000172736 99.92 True fake: scaffold gap size wrong estimation (local) 70655335 70664531 487956 478847 NC_000014.9 scf7180000172736 98.76 True fake: scaffold gap size wrong estimation (local) 70654617 70655143 488672 488146 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70645102 70654398 498145 488854 NC_000014.9 scf7180000172736 99.84 True fake: scaffold gap size wrong estimation (local) 70633150 70644881 510029 498341 NC_000014.9 scf7180000172736 99.33 True fake: scaffold gap size wrong estimation (local) 70628631 70632976 514457 510122 NC_000014.9 scf7180000172736 96.69 True fake: scaffold gap size wrong estimation (local) 70626808 70628484 516692 515016 NC_000014.9 scf7180000172736 99.82 True fake: scaffold gap size wrong estimation (local) 70626234 70626807 518715 518142 NC_000014.9 scf7180000172736 99.65 True fake: scaffold gap size wrong estimation (local) 70624858 70626233 520109 518734 NC_000014.9 scf7180000172736 98.4 True indel: indel (> 5bp) 70621021 70624798 523887 520110 NC_000014.9 scf7180000172736 99.92 True fake: scaffold gap size wrong estimation (local) 70616152 70620811 528710 524023 NC_000014.9 scf7180000172736 99.74 True fake: scaffold gap size wrong estimation (local) 70614116 70615114 530780 529782 NC_000014.9 scf7180000172736 99.8 True fake: scaffold gap size wrong estimation (local) 70612365 70613668 532656 531353 NC_000014.9 scf7180000172736 99.77 True fake: scaffold gap size wrong estimation (local) 70607477 70612046 537874 533305 NC_000014.9 scf7180000172736 99.91 True fake: scaffold gap size wrong estimation (local) 70606016 70607124 539232 538124 NC_000014.9 scf7180000172736 99.64 True fake: scaffold gap size wrong estimation (local) 70588715 70605287 557124 539907 NC_000014.9 scf7180000172736 96.28 True fake: scaffold gap size wrong estimation (local) 70575165 70588486 570625 557275 NC_000014.9 scf7180000172736 99.87 True fake: scaffold gap size wrong estimation (local) 70553531 70574408 592262 571250 NC_000014.9 scf7180000172736 99.51 True fake: scaffold gap size wrong estimation (local) 70546336 70547324 600852 599864 NC_000014.9 scf7180000172736 99.7 True fake: scaffold gap size wrong estimation (local) 70544079 70545688 602755 601146 NC_000014.9 scf7180000172736 99.94 True local misassembly 70545606 70546425 603595 602776 NC_000014.9 scf7180000172736 99.63 True fake: scaffold gap size wrong estimation (local) 70542905 70544025 604736 603616 NC_000014.9 scf7180000172736 98.04 True local misassembly 70541049 70542687 606375 604737 NC_000014.9 scf7180000172736 99.39 True fake: scaffold gap size wrong estimation (local) 70540128 70541048 607649 606729 NC_000014.9 scf7180000172736 100.0 True fake: scaffold gap size wrong estimation (local) 70536966 70538865 610545 608646 NC_000014.9 scf7180000172736 99.84 True fake: scaffold gap size wrong estimation (local) 70534096 70536255 613450 611291 NC_000014.9 scf7180000172736 99.91 True fake: scaffold gap size wrong estimation (local) 70530376 70533696 617216 613839 NC_000014.9 scf7180000172736 98.54 True fake: not a misassembly (possible transposable element) 86329050 86330497 618664 617217 NC_000014.9 scf7180000172736 99.8 True fake: not a misassembly (possible transposable element) 70510688 70530027 638463 618685 NC_000014.9 scf7180000172736 97.91 True fake: scaffold gap size wrong estimation (local) 70508498 70510607 640863 638754 NC_000014.9 scf7180000172736 99.91 True fake: scaffold gap size wrong estimation (local) 70500975 70501715 651080 650340 NC_000014.9 scf7180000172736 95.68 True local misassembly 70499807 70500853 652127 651081 NC_000014.9 scf7180000172736 99.9 True fake: scaffold gap size wrong estimation (local) 70498862 70499537 653061 652386 NC_000014.9 scf7180000172736 99.85 True fake: scaffold gap size wrong estimation (local) 70482890 70498729 669358 653192 NC_000014.9 scf7180000172736 98.1 True fake: scaffold gap size wrong estimation (local) 70468574 70475277 680545 673842 NC_000014.9 scf7180000172736 99.43 True relocation, scaffold gap is present, inconsistency = 232503 70232883 70235908 680708 683737 NC_000014.9 scf7180000172736 99.47 True CONTIG scf7180000172736 684541 misassembled 54486215 54487190 976 1 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54473609 54484983 13551 2177 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54461276 54473436 25774 13654 NC_000014.9 scf7180000172737 99.65 True fake: scaffold gap size wrong estimation (local) 54455314 54460482 31598 26407 NC_000014.9 scf7180000172737 99.88 True fake: scaffold gap size wrong estimation (local) 54454000 54455082 32898 31816 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54447790 54453910 39160 33049 NC_000014.9 scf7180000172737 99.75 True fake: scaffold gap size wrong estimation (local) 54443202 54447708 43859 39242 NC_000014.9 scf7180000172737 97.5 True indel: indel (<= 5bp) 54438242 54443004 48737 44058 NC_000014.9 scf7180000172737 98.22 True fake: scaffold gap size wrong estimation (local) 54431399 54438010 55538 48907 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54411190 54431160 75671 55744 NC_000014.9 scf7180000172737 99.28 True fake: scaffold gap size wrong estimation (local) 54408013 54411007 78748 75755 NC_000014.9 scf7180000172737 99.97 True fake: scaffold gap size wrong estimation (local) 54406054 54407769 80716 79002 NC_000014.9 scf7180000172737 99.83 True fake: scaffold gap size wrong estimation (local) 54402606 54403163 84049 83492 NC_000014.9 scf7180000172737 98.39 True fake: scaffold gap size wrong estimation (local) 54399136 54401993 87380 84523 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54393948 54399006 92582 87483 NC_000014.9 scf7180000172737 99.8 True fake: scaffold gap size wrong estimation (local) 54390182 54393350 96331 93147 NC_000014.9 scf7180000172737 99.97 True fake: scaffold gap size wrong estimation (local) 54380614 54389907 105830 96496 NC_000014.9 scf7180000172737 99.03 True fake: scaffold gap size wrong estimation (local) 54373973 54379486 112248 106856 NC_000014.9 scf7180000172737 96.61 True fake: scaffold gap size wrong estimation (local) 54361907 54373673 124578 112817 NC_000014.9 scf7180000172737 97.61 True fake: scaffold gap size wrong estimation (local) 54360289 54361703 126169 124755 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54352824 54360129 133635 126330 NC_000014.9 scf7180000172737 99.99 True fake: scaffold gap size wrong estimation (local) 54352019 54352569 134429 133879 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54324574 54351443 161740 134966 NC_000014.9 scf7180000172737 99.3 True fake: scaffold gap size wrong estimation (local) 54321978 54323702 164284 162560 NC_000014.9 scf7180000172737 100.0 True fake: scaffold gap size wrong estimation (local) 54287131 54321591 199207 164787 NC_000014.9 scf7180000172737 99.45 True fake: scaffold gap size wrong estimation (local) 54280876 54286543 205449 199782 NC_000014.9 scf7180000172737 99.84 True indel: stretch of mismatches 54260767 54280665 225490 205660 NC_000014.9 scf7180000172737 99.52 True fake: scaffold gap size wrong estimation (local) 54239969 54260619 246496 225716 NC_000014.9 scf7180000172737 99.52 True fake: scaffold gap size wrong estimation (local) 54228686 54233605 259470 254551 NC_000014.9 scf7180000172737 99.92 True fake: scaffold gap size wrong estimation (local) 54215804 54228404 272137 259665 NC_000014.9 scf7180000172737 98.93 True fake: not a misassembly (possible transposable element) 31567213 31568413 273338 272138 NC_000014.9 scf7180000172737 99.84 True fake: not a misassembly (possible transposable element) 54206261 54215872 283387 273790 NC_000014.9 scf7180000172737 99.66 True fake: scaffold gap size wrong estimation (local) 54198842 54202830 290624 286637 NC_000014.9 scf7180000172737 99.87 True fake: scaffold gap size wrong estimation (local) 54191094 54198377 298369 291063 NC_000014.9 scf7180000172737 99.5 True fake: scaffold gap size wrong estimation (local) 54189051 54190844 300425 298632 NC_000014.9 scf7180000172737 99.94 True fake: scaffold gap size wrong estimation (local) 54176523 54188804 312935 300604 NC_000014.9 scf7180000172737 99.85 True fake: scaffold gap size wrong estimation (local) 54161543 54176265 327926 313204 NC_000014.9 scf7180000172737 99.92 True fake: scaffold gap size wrong estimation (local) 54152775 54161256 336814 328178 NC_000014.9 scf7180000172737 99.79 True fake: scaffold gap size wrong estimation (local) 54123507 54152079 366033 337577 NC_000014.9 scf7180000172737 99.06 True fake: scaffold gap size wrong estimation (local) 54100033 54123045 389444 366405 NC_000014.9 scf7180000172737 99.3 True fake: scaffold gap size wrong estimation (local) 54074313 54099906 414951 389625 NC_000014.9 scf7180000172737 97.19 True fake: scaffold gap size wrong estimation (local) 54055972 54071789 432811 417009 NC_000014.9 scf7180000172737 99.28 True fake: scaffold gap size wrong estimation (local) 54038157 54055184 450578 433504 NC_000014.9 scf7180000172737 99.9 True fake: scaffold gap size wrong estimation (local) 54033752 54037963 454964 450741 NC_000014.9 scf7180000172737 99.76 True fake: scaffold gap size wrong estimation (local) 54020111 54027716 469661 461997 NC_000014.9 scf7180000172737 96.92 True fake: scaffold gap size wrong estimation (local) 54016241 54019981 473812 470072 NC_000014.9 scf7180000172737 99.89 True fake: scaffold gap size wrong estimation (local) 54007642 54016001 482513 474250 NC_000014.9 scf7180000172737 98.18 True fake: scaffold gap size wrong estimation (local) 54006047 54007496 484123 482673 NC_000014.9 scf7180000172737 99.86 True fake: scaffold gap size wrong estimation (local) 53990130 54004482 499748 485563 NC_000014.9 scf7180000172737 98.5 True fake: scaffold gap size wrong estimation (local) 53977033 53989938 512817 499893 NC_000014.9 scf7180000172737 99.77 True fake: scaffold gap size wrong estimation (local) 53976260 53976800 513502 512962 NC_000014.9 scf7180000172737 99.63 True fake: scaffold gap size wrong estimation (local) 53970197 53976045 519590 513742 NC_000014.9 scf7180000172737 99.85 True fake: scaffold gap size wrong estimation (local) 53968557 53969981 521189 519765 NC_000014.9 scf7180000172737 99.86 True fake: scaffold gap size wrong estimation (local) 53967433 53968282 522261 521412 NC_000014.9 scf7180000172737 99.88 True fake: scaffold gap size wrong estimation (local) 53961462 53967284 528244 522422 NC_000014.9 scf7180000172737 99.91 True fake: scaffold gap size wrong estimation (local) 53937380 53961222 552400 528530 NC_000014.9 scf7180000172737 99.87 True fake: scaffold gap size wrong estimation (local) 53918295 53937173 571406 552552 NC_000014.9 scf7180000172737 99.31 True CONTIG scf7180000172737 573891 correct 101158177 101176727 1440 19928 NC_000014.9 scf7180000172738 97.81 True fake: scaffold gap size wrong estimation (local) 101175890 101199782 20086 43957 NC_000014.9 scf7180000172738 99.54 True fake: scaffold gap size wrong estimation (local) 101199915 101202349 44093 46527 NC_000014.9 scf7180000172738 99.79 True fake: scaffold gap size wrong estimation (local) 101202600 101204775 46759 48934 NC_000014.9 scf7180000172738 99.68 True indel: indel (<= 5bp) 101204776 101206110 48936 50270 NC_000014.9 scf7180000172738 99.55 True local misassembly 101206238 101207263 50271 51296 NC_000014.9 scf7180000172738 97.95 True fake: scaffold gap size wrong estimation (local) 101207264 101209075 51723 53534 NC_000014.9 scf7180000172738 99.83 True local misassembly 101209241 101210858 53535 55152 NC_000014.9 scf7180000172738 98.39 True fake: scaffold gap size wrong estimation (local) 101211827 101214751 56132 59014 NC_000014.9 scf7180000172738 98.0 True fake: scaffold gap size wrong estimation (local) 101215019 101218791 59168 62937 NC_000014.9 scf7180000172738 99.92 True indel: indel (<= 5bp) 101218869 101237715 63012 81660 NC_000014.9 scf7180000172738 98.72 True fake: scaffold gap size wrong estimation (local) 101237870 101245203 81744 89077 NC_000014.9 scf7180000172738 99.85 True fake: scaffold gap size wrong estimation (local) 101246507 101253848 90953 98258 NC_000014.9 scf7180000172738 99.36 True fake: scaffold gap size wrong estimation (local) 101253998 101260961 98452 105415 NC_000014.9 scf7180000172738 99.9 True fake: scaffold gap size wrong estimation (local) 101260664 101265366 105694 110302 NC_000014.9 scf7180000172738 97.89 True fake: scaffold gap size wrong estimation (local) 101265609 101266227 110512 111130 NC_000014.9 scf7180000172738 99.84 True fake: scaffold gap size wrong estimation (local) 101272219 101273931 116877 118589 NC_000014.9 scf7180000172738 99.94 True fake: scaffold gap size wrong estimation (local) 101274155 101278832 118848 123543 NC_000014.9 scf7180000172738 99.87 True fake: scaffold gap size wrong estimation (local) 101279067 101299269 123685 144132 NC_000014.9 scf7180000172738 99.15 True relocation, scaffold gap is present, inconsistency = -55813055 45486235 45487704 144153 145622 NC_000014.9 scf7180000172738 99.66 True fake: scaffold gap size wrong estimation (local) 45487897 45490486 145769 148358 NC_000014.9 scf7180000172738 99.88 True indel: stretch of mismatches 45490554 45492635 148426 150507 NC_000014.9 scf7180000172738 99.71 True fake: not a misassembly (possible transposable element) 101299524 101305574 150547 156599 NC_000014.9 scf7180000172738 99.9 True fake: not a misassembly (possible transposable element) 45492497 45495037 156620 159160 NC_000014.9 scf7180000172738 99.84 True relocation, inconsistency = 55810348 101305492 101306112 159267 159887 NC_000014.9 scf7180000172738 98.87 True fake: scaffold gap size wrong estimation (local) 101306781 101308144 161485 162848 NC_000014.9 scf7180000172738 99.49 True fake: scaffold gap size wrong estimation (local) 101309125 101310184 164093 165152 NC_000014.9 scf7180000172738 99.72 True fake: scaffold gap size wrong estimation (local) 101311467 101314520 166326 169379 NC_000014.9 scf7180000172738 99.97 True fake: not a misassembly (possible transposable element) 38494721 38496520 169619 171418 NC_000014.9 scf7180000172738 100.0 True fake: not a misassembly (possible transposable element) 101314658 101324921 171469 181732 NC_000014.9 scf7180000172738 99.97 True fake: scaffold gap size wrong estimation (local) 101325036 101327968 182079 184896 NC_000014.9 scf7180000172738 96.02 True fake: scaffold gap size wrong estimation (local) 101328145 101352932 185527 210369 NC_000014.9 scf7180000172738 99.65 True fake: scaffold gap size wrong estimation (local) 101353743 101355415 210820 212492 NC_000014.9 scf7180000172738 99.88 True local misassembly 101353134 101366422 212543 225642 NC_000014.9 scf7180000172738 98.38 True fake: scaffold gap size wrong estimation (local) 101366566 101377710 225787 236934 NC_000014.9 scf7180000172738 99.85 True fake: scaffold gap size wrong estimation (local) 101377902 101386321 237068 245482 NC_000014.9 scf7180000172738 99.83 True fake: scaffold gap size wrong estimation (local) 101387494 101396807 246450 256288 NC_000014.9 scf7180000172738 95.01 True fake: scaffold gap size wrong estimation (local) 101397038 101402058 256484 261496 NC_000014.9 scf7180000172738 99.68 True fake: scaffold gap size wrong estimation (local) 101402256 101419333 261605 278682 NC_000014.9 scf7180000172738 99.87 True fake: scaffold gap size wrong estimation (local) 101419910 101429115 279242 288396 NC_000014.9 scf7180000172738 99.17 True fake: scaffold gap size wrong estimation (local) 101429409 101432259 288683 291551 NC_000014.9 scf7180000172738 99.05 True fake: scaffold gap size wrong estimation (local) 101432417 101433762 291711 293056 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 101434042 101434595 293318 293871 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 101434881 101436696 294172 295987 NC_000014.9 scf7180000172738 99.89 True fake: scaffold gap size wrong estimation (local) 101436859 101443424 296098 302680 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 101443535 101447687 303103 307082 NC_000014.9 scf7180000172738 95.71 True fake: scaffold gap size wrong estimation (local) 101447780 101454984 307145 314344 NC_000014.9 scf7180000172738 99.13 True fake: scaffold gap size wrong estimation (local) 101455071 101471201 314437 330596 NC_000014.9 scf7180000172738 99.77 True fake: scaffold gap size wrong estimation (local) 101471422 101489892 330800 349260 NC_000014.9 scf7180000172738 99.65 True fake: scaffold gap size wrong estimation (local) 101490218 101523939 349587 383231 NC_000014.9 scf7180000172738 99.63 True fake: scaffold gap size wrong estimation (local) 101524826 101560657 383889 419720 NC_000014.9 scf7180000172738 99.95 True fake: scaffold gap size wrong estimation (local) 101560888 101570157 419943 429220 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 101570341 101584926 429635 443669 NC_000014.9 scf7180000172738 96.18 True fake: not a misassembly (possible transposable element) 35051453 35052412 443690 444649 NC_000014.9 scf7180000172738 99.9 True fake: not a misassembly (possible transposable element) 101585076 101597318 444650 456897 NC_000014.9 scf7180000172738 99.87 True fake: scaffold gap size wrong estimation (local) 101597584 101606458 457108 465982 NC_000014.9 scf7180000172738 99.92 True fake: scaffold gap size wrong estimation (local) 101606538 101607650 466087 467202 NC_000014.9 scf7180000172738 99.55 True fake: scaffold gap size wrong estimation (local) 101607885 101617630 467518 477310 NC_000014.9 scf7180000172738 99.37 True fake: scaffold gap size wrong estimation (local) 101617856 101627336 477423 486803 NC_000014.9 scf7180000172738 98.72 True fake: scaffold gap size wrong estimation (local) 101627581 101657586 487316 517401 NC_000014.9 scf7180000172738 98.44 True fake: scaffold gap size wrong estimation (local) 101657406 101658293 517820 518707 NC_000014.9 scf7180000172738 99.77 True fake: scaffold gap size wrong estimation (local) 101658346 101661006 518739 521399 NC_000014.9 scf7180000172738 99.96 True fake: scaffold gap size wrong estimation (local) 101661007 101662122 521732 522847 NC_000014.9 scf7180000172738 99.91 True local misassembly 101662672 101663891 522848 524067 NC_000014.9 scf7180000172738 98.36 True local misassembly 101662035 101662598 524088 524651 NC_000014.9 scf7180000172738 99.82 True local misassembly 101663194 101665021 524652 526479 NC_000014.9 scf7180000172738 98.91 True local misassembly 101665022 101666959 526870 528807 NC_000014.9 scf7180000172738 99.28 True fake: scaffold gap size wrong estimation (local) 101666960 101669100 529449 531589 NC_000014.9 scf7180000172738 99.95 True fake: scaffold gap size wrong estimation (local) 101669101 101670640 531609 533148 NC_000014.9 scf7180000172738 99.81 True fake: scaffold gap size wrong estimation (local) 101672187 101673323 534881 536017 NC_000014.9 scf7180000172738 100.0 True relocation, scaffold gap is present, inconsistency = 57581771 44087487 44090077 538949 536356 NC_000014.9 scf7180000172738 99.58 True fake: scaffold gap size wrong estimation (local) 44086605 44087278 539780 539107 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 44084074 44086345 542420 540160 NC_000014.9 scf7180000172738 99.34 True fake: scaffold gap size wrong estimation (local) 44082603 44083315 543776 543064 NC_000014.9 scf7180000172738 100.0 True fake: scaffold gap size wrong estimation (local) 44075742 44082395 550539 543886 NC_000014.9 scf7180000172738 99.95 True fake: scaffold gap size wrong estimation (local) 44047633 44075533 578737 550738 NC_000014.9 scf7180000172738 99.35 True fake: scaffold gap size wrong estimation (local) 44045955 44046793 580279 579442 NC_000014.9 scf7180000172738 98.93 True indel: indel (<= 5bp) 44041970 44045883 584331 580353 NC_000014.9 scf7180000172738 98.76 True fake: not a misassembly (possible transposable element) 65306930 65307891 585313 584352 NC_000014.9 scf7180000172738 100.0 True fake: not a misassembly (possible transposable element) 44027035 44041999 600284 585314 NC_000014.9 scf7180000172738 99.89 True CONTIG scf7180000172738 603304 misassembled 24772793 24835529 62703 1 NC_000014.9 scf7180000172739 99.7 True fake: scaffold gap size wrong estimation (local) 24771276 24771840 63760 63196 NC_000014.9 scf7180000172739 100.0 True fake: scaffold gap size wrong estimation (local) 24769187 24770312 66053 64928 NC_000014.9 scf7180000172739 99.73 True indel: indel (> 5bp) 24765098 24768995 70132 66235 NC_000014.9 scf7180000172739 99.69 True fake: scaffold gap size wrong estimation (local) 24764006 24764569 71185 70622 NC_000014.9 scf7180000172739 98.76 True fake: scaffold gap size wrong estimation (local) 24754942 24762272 80355 72985 NC_000014.9 scf7180000172739 99.1 True local misassembly 24752126 24754325 83165 80969 NC_000014.9 scf7180000172739 99.18 True fake: scaffold gap size wrong estimation (local) 24748257 24750575 87022 84704 NC_000014.9 scf7180000172739 99.96 True fake: scaffold gap size wrong estimation (local) 24737834 24747837 97449 87431 NC_000014.9 scf7180000172739 99.79 True fake: scaffold gap size wrong estimation (local) 24732046 24737133 103264 98057 NC_000014.9 scf7180000172739 97.69 True relocation, inconsistency = -45521410 70252189 70253455 104531 103265 NC_000014.9 scf7180000172739 98.31 True local misassembly 70250224 70251340 105648 104532 NC_000014.9 scf7180000172739 99.91 True relocation, scaffold gap is present, inconsistency = 45517754 24729266 24731561 108852 106557 NC_000014.9 scf7180000172739 99.87 True fake: not a misassembly (possible transposable element) 70309251 70310154 109810 110716 NC_000014.9 scf7180000172739 98.02 True fake: not a misassembly (possible transposable element) 24711873 24728272 127056 110737 NC_000014.9 scf7180000172739 99.25 True fake: scaffold gap size wrong estimation (local) 24708578 24711600 130325 127288 NC_000014.9 scf7180000172739 100.0 True fake: scaffold gap size wrong estimation (local) 24697845 24708310 140923 130476 NC_000014.9 scf7180000172739 99.8 True fake: scaffold gap size wrong estimation (local) 24686592 24697023 152034 142004 NC_000014.9 scf7180000172739 95.47 True fake: scaffold gap size wrong estimation (local) 24676365 24686021 162186 152530 NC_000014.9 scf7180000172739 99.95 True fake: scaffold gap size wrong estimation (local) 24666750 24676260 171814 162304 NC_000014.9 scf7180000172739 99.98 True fake: scaffold gap size wrong estimation (local) 24652027 24666383 186495 172146 NC_000014.9 scf7180000172739 99.83 True fake: scaffold gap size wrong estimation (local) 24648934 24650930 189584 187588 NC_000014.9 scf7180000172739 99.95 True fake: scaffold gap size wrong estimation (local) 24642868 24648186 195804 190503 NC_000014.9 scf7180000172739 99.58 True fake: scaffold gap size wrong estimation (local) 24628920 24642627 209636 195926 NC_000014.9 scf7180000172739 99.85 True fake: scaffold gap size wrong estimation (local) 24621432 24628804 217256 209770 NC_000014.9 scf7180000172739 98.59 True fake: scaffold gap size wrong estimation (local) 24620459 24621066 218094 217487 NC_000014.9 scf7180000172739 99.84 True fake: scaffold gap size wrong estimation (local) 24619660 24620225 219109 218544 NC_000014.9 scf7180000172739 100.0 True fake: scaffold gap size wrong estimation (local) 24598793 24617630 240426 221365 NC_000014.9 scf7180000172739 98.21 True relocation, scaffold gap is present, inconsistency = -21972163 46568646 46569376 242736 242006 NC_000014.9 scf7180000172739 99.32 True relocation, scaffold gap is present, inconsistency = -2780911 49348597 49349213 243697 243080 NC_000014.9 scf7180000172739 99.84 True fake: scaffold gap size wrong estimation (local) 49334902 49348488 257373 243772 NC_000014.9 scf7180000172739 99.66 True fake: scaffold gap size wrong estimation (local) 49317904 49334757 274196 257494 NC_000014.9 scf7180000172739 98.87 True fake: scaffold gap size wrong estimation (local) 49314220 49317423 277923 274703 NC_000014.9 scf7180000172739 99.59 True fake: scaffold gap size wrong estimation (local) 49300114 49314035 291991 278086 NC_000014.9 scf7180000172739 99.71 True fake: scaffold gap size wrong estimation (local) 49274221 49299878 317735 292096 NC_000014.9 scf7180000172739 99.65 True indel: indel (<= 5bp) 49257289 49274083 334733 317871 NC_000014.9 scf7180000172739 99.71 True fake: scaffold gap size wrong estimation (local) 49242134 49257099 349806 334921 NC_000014.9 scf7180000172739 98.32 True fake: scaffold gap size wrong estimation (local) 49238993 49242019 353255 350229 NC_000014.9 scf7180000172739 99.34 True fake: scaffold gap size wrong estimation (local) 49236173 49238318 356194 354049 NC_000014.9 scf7180000172739 99.91 True fake: scaffold gap size wrong estimation (local) 49232626 49236339 360429 356716 NC_000014.9 scf7180000172739 99.78 True fake: scaffold gap size wrong estimation (local) 49185721 49232463 407914 361194 NC_000014.9 scf7180000172739 99.81 True fake: not a misassembly (possible transposable element) 48291208 48292966 407935 409693 NC_000014.9 scf7180000172739 100.0 True fake: not a misassembly (possible transposable element) 49183525 49184693 410862 409694 NC_000014.9 scf7180000172739 99.66 True fake: scaffold gap size wrong estimation (local) 49180327 49182046 414294 412575 NC_000014.9 scf7180000172739 99.76 True fake: scaffold gap size wrong estimation (local) 49165678 49180061 429126 414547 NC_000014.9 scf7180000172739 98.59 True fake: scaffold gap size wrong estimation (local) 49161968 49165549 432932 429351 NC_000014.9 scf7180000172739 99.94 True fake: scaffold gap size wrong estimation (local) 49158863 49161836 436045 433047 NC_000014.9 scf7180000172739 99.77 True fake: not a misassembly (possible transposable element) 51125756 51126463 436066 436773 NC_000014.9 scf7180000172739 99.76 True fake: not a misassembly (possible transposable element) 49155950 49158945 439789 436774 NC_000014.9 scf7180000172739 99.57 True fake: scaffold gap size wrong estimation (local) 49148605 49155758 447156 439971 NC_000014.9 scf7180000172739 99.04 True fake: scaffold gap size wrong estimation (local) 49134807 49144005 461666 452469 NC_000014.9 scf7180000172739 99.87 True fake: scaffold gap size wrong estimation (local) 49130998 49134519 465528 461943 NC_000014.9 scf7180000172739 99.83 True CONTIG scf7180000172739 467179 misassembled 85956147 85956876 1 724 NC_000014.9 scf7180000172740 99.06 True relocation, inconsistency = -34940502 51016375 51033141 725 17459 NC_000014.9 scf7180000172740 99.2 True fake: scaffold gap size wrong estimation (local) 51033314 51039766 17575 24027 NC_000014.9 scf7180000172740 99.91 True fake: scaffold gap size wrong estimation (local) 51040007 51048744 24244 32991 NC_000014.9 scf7180000172740 99.66 True fake: scaffold gap size wrong estimation (local) 51049825 51053519 33967 37797 NC_000014.9 scf7180000172740 95.51 True fake: scaffold gap size wrong estimation (local) 51053784 51059544 37924 43702 NC_000014.9 scf7180000172740 99.84 True fake: scaffold gap size wrong estimation (local) 51059801 51071235 43944 55306 NC_000014.9 scf7180000172740 98.87 True fake: scaffold gap size wrong estimation (local) 51071388 51083469 55402 67443 NC_000014.9 scf7180000172740 99.54 True fake: scaffold gap size wrong estimation (local) 51084424 51105304 68222 88951 NC_000014.9 scf7180000172740 99.09 True fake: scaffold gap size wrong estimation (local) 51105527 51109896 89328 93685 NC_000014.9 scf7180000172740 99.59 True fake: not a misassembly (possible transposable element) 37878865 37880497 95319 93686 NC_000014.9 scf7180000172740 99.82 True fake: not a misassembly (possible transposable element) 51110317 51124804 95340 109810 NC_000014.9 scf7180000172740 99.76 True fake: scaffold gap size wrong estimation (local) 51125284 51125844 110335 110895 NC_000014.9 scf7180000172740 100.0 True fake: scaffold gap size wrong estimation (local) 51126692 51128873 111709 113921 NC_000014.9 scf7180000172740 99.41 True fake: scaffold gap size wrong estimation (local) 51129100 51132774 114191 117865 NC_000014.9 scf7180000172740 99.86 True fake: scaffold gap size wrong estimation (local) 51133658 51134688 119100 120130 NC_000014.9 scf7180000172740 97.96 True fake: scaffold gap size wrong estimation (local) 51134966 51135966 120316 121298 NC_000014.9 scf7180000172740 97.9 True fake: scaffold gap size wrong estimation (local) 51136560 51151791 121837 137107 NC_000014.9 scf7180000172740 98.98 True fake: scaffold gap size wrong estimation (local) 51153789 51154593 138790 139595 NC_000014.9 scf7180000172740 99.63 True fake: scaffold gap size wrong estimation (local) 51154926 51165867 139896 150891 NC_000014.9 scf7180000172740 99.84 True fake: scaffold gap size wrong estimation (local) 51166361 51169808 151348 154795 NC_000014.9 scf7180000172740 99.88 True fake: scaffold gap size wrong estimation (local) 51169997 51175043 154878 159912 NC_000014.9 scf7180000172740 99.62 True fake: scaffold gap size wrong estimation (local) 51175423 51177892 160269 162738 NC_000014.9 scf7180000172740 99.96 True fake: scaffold gap size wrong estimation (local) 51178203 51189361 162876 174380 NC_000014.9 scf7180000172740 97.04 True fake: scaffold gap size wrong estimation (local) 51189508 51191600 174488 176580 NC_000014.9 scf7180000172740 99.9 True fake: scaffold gap size wrong estimation (local) 51191891 51194427 176843 179379 NC_000014.9 scf7180000172740 100.0 True fake: scaffold gap size wrong estimation (local) 51194687 51197387 179606 182300 NC_000014.9 scf7180000172740 99.67 True fake: scaffold gap size wrong estimation (local) 51197647 51213683 182551 198530 NC_000014.9 scf7180000172740 99.38 True fake: scaffold gap size wrong estimation (local) 51216546 51217876 200978 202309 NC_000014.9 scf7180000172740 99.55 True fake: scaffold gap size wrong estimation (local) 51218005 51220379 202602 204915 NC_000014.9 scf7180000172740 97.32 True fake: scaffold gap size wrong estimation (local) 51220788 51226327 205419 210912 NC_000014.9 scf7180000172740 98.66 True fake: scaffold gap size wrong estimation (local) 51226594 51229960 211110 214476 NC_000014.9 scf7180000172740 99.76 True fake: scaffold gap size wrong estimation (local) 51230167 51241917 214599 226297 NC_000014.9 scf7180000172740 99.23 True fake: scaffold gap size wrong estimation (local) 51242046 51247364 226394 231728 NC_000014.9 scf7180000172740 99.91 True fake: scaffold gap size wrong estimation (local) 51247588 51250526 231954 234892 NC_000014.9 scf7180000172740 99.93 True fake: scaffold gap size wrong estimation (local) 51250732 51257819 235045 242099 NC_000014.9 scf7180000172740 99.42 True fake: scaffold gap size wrong estimation (local) 51257977 51263684 242217 247923 NC_000014.9 scf7180000172740 99.88 True fake: scaffold gap size wrong estimation (local) 51263772 51278820 248008 262944 NC_000014.9 scf7180000172740 99.1 True fake: scaffold gap size wrong estimation (local) 51279008 51279605 263076 263673 NC_000014.9 scf7180000172740 100.0 True fake: scaffold gap size wrong estimation (local) 51279802 51287248 263892 271289 NC_000014.9 scf7180000172740 99.17 True fake: scaffold gap size wrong estimation (local) 51287369 51289561 271371 273563 NC_000014.9 scf7180000172740 100.0 True fake: scaffold gap size wrong estimation (local) 51289778 51312187 273712 296372 NC_000014.9 scf7180000172740 98.31 True fake: scaffold gap size wrong estimation (local) 51314005 51320449 298013 304451 NC_000014.9 scf7180000172740 99.78 True fake: scaffold gap size wrong estimation (local) 51320619 51322857 304644 306795 NC_000014.9 scf7180000172740 95.7 True fake: scaffold gap size wrong estimation (local) 51323153 51326320 307020 310187 NC_000014.9 scf7180000172740 99.97 True indel: indel (<= 5bp) 51326393 51329538 310262 313401 NC_000014.9 scf7180000172740 99.71 True fake: scaffold gap size wrong estimation (local) 51329707 51346532 313510 330397 NC_000014.9 scf7180000172740 99.55 True fake: scaffold gap size wrong estimation (local) 51346669 51348851 330499 332710 NC_000014.9 scf7180000172740 99.5 True fake: scaffold gap size wrong estimation (local) 51349159 51351314 333099 335224 NC_000014.9 scf7180000172740 98.55 True fake: scaffold gap size wrong estimation (local) 51351568 51353216 335522 337249 NC_000014.9 scf7180000172740 96.21 True fake: scaffold gap size wrong estimation (local) 51353365 51362418 337409 346492 NC_000014.9 scf7180000172740 99.82 True fake: scaffold gap size wrong estimation (local) 51362656 51366782 346712 350838 NC_000014.9 scf7180000172740 100.0 True fake: scaffold gap size wrong estimation (local) 51367226 51370337 351354 354458 NC_000014.9 scf7180000172740 99.74 True relocation, scaffold gap is present, inconsistency = 40813761 92184119 92185344 355693 354479 NC_000014.9 scf7180000172740 98.42 True fake: scaffold gap size wrong estimation (local) 92181307 92182620 358451 357138 NC_000014.9 scf7180000172740 99.85 True fake: scaffold gap size wrong estimation (local) 92179360 92180406 360476 359430 NC_000014.9 scf7180000172740 100.0 True relocation, scaffold gap is present, inconsistency = 10331390 81844991 81845584 363455 362862 NC_000014.9 scf7180000172740 100.0 True CONTIG scf7180000172740 365830 misassembled 27532873 27533833 420 1379 NC_000014.9 scf7180000172741 99.9 True fake: scaffold gap size wrong estimation (local) 27534784 27556981 2305 24320 NC_000014.9 scf7180000172741 98.63 True fake: scaffold gap size wrong estimation (local) 27557091 27576895 24407 44220 NC_000014.9 scf7180000172741 99.8 True fake: scaffold gap size wrong estimation (local) 27576881 27589911 45574 58918 NC_000014.9 scf7180000172741 96.58 True fake: scaffold gap size wrong estimation (local) 27590097 27598322 59047 67266 NC_000014.9 scf7180000172741 99.65 True fake: scaffold gap size wrong estimation (local) 27598561 27600530 67394 69363 NC_000014.9 scf7180000172741 100.0 True fake: scaffold gap size wrong estimation (local) 27600676 27641039 69457 110289 NC_000014.9 scf7180000172741 98.83 True fake: scaffold gap size wrong estimation (local) 27641135 27647515 110764 117141 NC_000014.9 scf7180000172741 99.7 True fake: scaffold gap size wrong estimation (local) 27647682 27664242 117293 134018 NC_000014.9 scf7180000172741 99.13 True fake: scaffold gap size wrong estimation (local) 27664742 27673412 134406 143084 NC_000014.9 scf7180000172741 99.84 True fake: not a misassembly (possible transposable element) 34143234 34143840 143736 144342 NC_000014.9 scf7180000172741 98.02 True fake: not a misassembly (possible transposable element) 27678969 27680427 145140 146614 NC_000014.9 scf7180000172741 98.8 True relocation, inconsistency = 3060864 30741292 30742876 146615 148198 NC_000014.9 scf7180000172741 99.81 True relocation, scaffold gap is present, inconsistency = 3403041 34145938 34150205 148219 152486 NC_000014.9 scf7180000172741 99.95 True relocation, scaffold gap is present, inconsistency = -6470219 27680430 27689547 152930 162050 NC_000014.9 scf7180000172741 99.84 True fake: scaffold gap size wrong estimation (local) 27690558 27703056 162924 175441 NC_000014.9 scf7180000172741 99.87 True fake: not a misassembly (possible transposable element) 59169542 59170337 175490 176285 NC_000014.9 scf7180000172741 99.87 True fake: not a misassembly (possible transposable element) 27703191 27707180 176336 180322 NC_000014.9 scf7180000172741 99.85 True fake: scaffold gap size wrong estimation (local) 27707453 27751332 180465 224368 NC_000014.9 scf7180000172741 99.64 True fake: scaffold gap size wrong estimation (local) 27751995 27753191 224922 226118 NC_000014.9 scf7180000172741 99.92 True fake: scaffold gap size wrong estimation (local) 27753429 27767241 226217 240152 NC_000014.9 scf7180000172741 99.14 True fake: scaffold gap size wrong estimation (local) 27767318 27779265 240173 252450 NC_000014.9 scf7180000172741 96.94 True fake: scaffold gap size wrong estimation (local) 27779603 27796080 252705 269169 NC_000014.9 scf7180000172741 99.86 True fake: scaffold gap size wrong estimation (local) 27796337 27797133 269371 270167 NC_000014.9 scf7180000172741 99.87 True fake: scaffold gap size wrong estimation (local) 27797411 27819456 270373 292215 NC_000014.9 scf7180000172741 98.83 True fake: scaffold gap size wrong estimation (local) 27819766 27820996 292467 293697 NC_000014.9 scf7180000172741 99.92 True fake: scaffold gap size wrong estimation (local) 27822685 27827522 295535 300370 NC_000014.9 scf7180000172741 99.77 True fake: scaffold gap size wrong estimation (local) 27827780 27852226 300633 325090 NC_000014.9 scf7180000172741 99.68 True fake: scaffold gap size wrong estimation (local) 27852494 27861073 325114 333837 NC_000014.9 scf7180000172741 99.77 True fake: scaffold gap size wrong estimation (local) 27861781 27887202 334385 359954 NC_000014.9 scf7180000172741 99.27 True fake: scaffold gap size wrong estimation (local) 27887490 27903430 360167 376278 NC_000014.9 scf7180000172741 96.93 True fake: scaffold gap size wrong estimation (local) 27903521 27919660 376381 392560 NC_000014.9 scf7180000172741 99.48 True fake: scaffold gap size wrong estimation (local) 27919883 27920396 392805 393319 NC_000014.9 scf7180000172741 97.48 True fake: scaffold gap size wrong estimation (local) 27921084 27940487 393960 413600 NC_000014.9 scf7180000172741 98.25 True fake: scaffold gap size wrong estimation (local) 27940920 27941772 414153 415099 NC_000014.9 scf7180000172741 99.62 True fake: scaffold gap size wrong estimation (local) 27943888 27947633 416802 420537 NC_000014.9 scf7180000172741 99.71 True fake: not a misassembly (possible transposable element) 104621898 104623217 420798 422117 NC_000014.9 scf7180000172741 99.55 True fake: not a misassembly (possible transposable element) 27947937 27966494 422138 440497 NC_000014.9 scf7180000172741 98.82 True fake: scaffold gap size wrong estimation (local) 27966908 27968939 440941 442953 NC_000014.9 scf7180000172741 96.79 True fake: scaffold gap size wrong estimation (local) 27969058 27969929 443084 443955 NC_000014.9 scf7180000172741 100.0 True fake: scaffold gap size wrong estimation (local) 27970088 27976005 444116 450088 NC_000014.9 scf7180000172741 99.14 True fake: scaffold gap size wrong estimation (local) 27976213 27984688 450256 458730 NC_000014.9 scf7180000172741 99.98 True fake: scaffold gap size wrong estimation (local) 27984979 27992039 458962 466022 NC_000014.9 scf7180000172741 99.84 True fake: scaffold gap size wrong estimation (local) 27992215 28011785 466163 485694 NC_000014.9 scf7180000172741 99.64 True fake: scaffold gap size wrong estimation (local) 28012061 28026518 485936 500368 NC_000014.9 scf7180000172741 99.78 True fake: scaffold gap size wrong estimation (local) 28026816 28041501 500613 515765 NC_000014.9 scf7180000172741 96.87 True fake: scaffold gap size wrong estimation (local) 28041927 28056257 515894 530736 NC_000014.9 scf7180000172741 96.12 True fake: scaffold gap size wrong estimation (local) 28056899 28068026 531364 542487 NC_000014.9 scf7180000172741 99.88 True fake: scaffold gap size wrong estimation (local) 28068295 28071267 542613 545595 NC_000014.9 scf7180000172741 99.56 True CONTIG scf7180000172741 545597 misassembled 18483276 18484709 5168 6601 NC_000014.9 scf7180000172742 100.0 True local misassembly 18485454 18486048 7114 7708 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 18487632 18489231 9707 11306 NC_000014.9 scf7180000172742 99.88 True local misassembly 18489520 18490933 11307 12720 NC_000014.9 scf7180000172742 99.86 True local misassembly 18491270 18491937 12721 13388 NC_000014.9 scf7180000172742 99.86 True local misassembly 18491938 18492488 13724 14274 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 18493603 18495892 14891 17180 NC_000014.9 scf7180000172742 99.83 True fake: scaffold gap size wrong estimation (local) 18496259 18497033 19182 19956 NC_000014.9 scf7180000172742 99.74 True local misassembly 18497271 18497992 19957 20678 NC_000014.9 scf7180000172742 100.0 True local misassembly 18498281 18501047 20679 23445 NC_000014.9 scf7180000172742 99.75 True local misassembly 18501526 18502250 23446 24170 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 18503388 18504189 25332 26133 NC_000014.9 scf7180000172742 99.38 True fake: scaffold gap size wrong estimation (local) 18504637 18506503 26679 28545 NC_000014.9 scf7180000172742 99.89 True fake: scaffold gap size wrong estimation (local) 18507032 18508161 28639 29768 NC_000014.9 scf7180000172742 99.47 True local misassembly 18508308 18508814 29771 30277 NC_000014.9 scf7180000172742 100.0 True local misassembly 18509018 18509518 30767 31267 NC_000014.9 scf7180000172742 99.8 True fake: scaffold gap size wrong estimation (extensive) 18543874 18544887 56824 57837 NC_000014.9 scf7180000172742 99.8 True fake: scaffold gap size wrong estimation (local) 18545853 18548923 59071 62163 NC_000014.9 scf7180000172742 99.25 True fake: scaffold gap size wrong estimation (local) 18549057 18549989 62290 63222 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 18550120 18559012 63636 72524 NC_000014.9 scf7180000172742 99.84 True fake: scaffold gap size wrong estimation (local) 18561230 18566089 74820 79612 NC_000014.9 scf7180000172742 97.99 True fake: scaffold gap size wrong estimation (local) 18566317 18566982 79945 80610 NC_000014.9 scf7180000172742 99.85 True fake: scaffold gap size wrong estimation (local) 18567902 18569047 81471 82610 NC_000014.9 scf7180000172742 99.38 True relocation, scaffold gap is present, inconsistency = 10901 18581937 18585114 87776 84599 NC_000014.9 scf7180000172742 99.72 True local misassembly 18580174 18581936 90049 88287 NC_000014.9 scf7180000172742 98.98 True fake: not a misassembly (possible transposable element) 104490914 104492453 91588 90050 NC_000014.9 scf7180000172742 99.87 True fake: not a misassembly (possible transposable element) 18577874 18579442 93305 91737 NC_000014.9 scf7180000172742 100.0 True relocation, scaffold gap is present, inconsistency = -85912808 104487646 104489967 96341 94020 NC_000014.9 scf7180000172742 99.1 True indel: indel (> 5bp) 104484754 104487636 99224 96342 NC_000014.9 scf7180000172742 99.83 True fake: not a misassembly (possible transposable element) 18575776 18576471 99940 99245 NC_000014.9 scf7180000172742 100.0 True fake: not a misassembly (possible transposable element) 104464670 104484605 120004 99961 NC_000014.9 scf7180000172742 98.26 True fake: scaffold gap size wrong estimation (local) 104459703 104464411 125319 120231 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 104431149 104459234 155002 125786 NC_000014.9 scf7180000172742 96.27 True fake: scaffold gap size wrong estimation (local) 104415923 104429806 170149 156259 NC_000014.9 scf7180000172742 99.6 True relocation, scaffold gap is present, inconsistency = 32724819 71680562 71690461 170792 180727 NC_000014.9 scf7180000172742 99.8 True fake: not a misassembly (possible transposable element) 75746605 75748285 180728 182408 NC_000014.9 scf7180000172742 99.94 True fake: not a misassembly (possible transposable element) 71691403 71700760 182429 191798 NC_000014.9 scf7180000172742 99.98 True fake: scaffold gap size wrong estimation (local) 71701020 71710550 192023 201574 NC_000014.9 scf7180000172742 99.37 True fake: scaffold gap size wrong estimation (local) 71710820 71729144 201836 220182 NC_000014.9 scf7180000172742 99.91 True fake: scaffold gap size wrong estimation (local) 71729309 71746991 220278 238054 NC_000014.9 scf7180000172742 98.97 True fake: scaffold gap size wrong estimation (local) 71747236 71753778 238191 244733 NC_000014.9 scf7180000172742 99.94 True fake: scaffold gap size wrong estimation (local) 71753988 71755940 244939 246891 NC_000014.9 scf7180000172742 99.95 True fake: scaffold gap size wrong estimation (local) 71756767 71757298 247643 248174 NC_000014.9 scf7180000172742 96.05 True indel: indel (<= 5bp) 71757299 71759385 248179 250265 NC_000014.9 scf7180000172742 98.99 True indel: indel (> 5bp) 71759386 71760605 250283 251502 NC_000014.9 scf7180000172742 99.84 True fake: scaffold gap size wrong estimation (local) 71761227 71761751 252138 252662 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 71761910 71763705 252761 254556 NC_000014.9 scf7180000172742 99.94 True fake: scaffold gap size wrong estimation (local) 71763808 71771687 254775 262630 NC_000014.9 scf7180000172742 97.98 True relocation, scaffold gap is present, inconsistency = -1460806 70314567 70320159 266316 271906 NC_000014.9 scf7180000172742 99.7 True fake: scaffold gap size wrong estimation (local) 70320238 70321393 271983 273150 NC_000014.9 scf7180000172742 99.47 True fake: scaffold gap size wrong estimation (local) 70322018 70326286 273738 278005 NC_000014.9 scf7180000172742 99.69 True fake: scaffold gap size wrong estimation (local) 70328085 70329727 279828 281471 NC_000014.9 scf7180000172742 99.51 True relocation, scaffold gap is present, inconsistency = -9579197 60750551 60752794 281492 283735 NC_000014.9 scf7180000172742 99.91 True fake: scaffold gap size wrong estimation (local) 60752996 60754342 283869 285215 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 60754625 60755233 285547 286155 NC_000014.9 scf7180000172742 99.84 True fake: scaffold gap size wrong estimation (local) 60755415 60758252 286259 289096 NC_000014.9 scf7180000172742 99.93 True local misassembly 60758460 60765024 289171 295740 NC_000014.9 scf7180000172742 99.74 True fake: scaffold gap size wrong estimation (local) 60765202 60766322 296056 297176 NC_000014.9 scf7180000172742 100.0 True local misassembly 60766685 60767749 297177 298241 NC_000014.9 scf7180000172742 99.15 True fake: scaffold gap size wrong estimation (local) 60767749 60772339 298482 302929 NC_000014.9 scf7180000172742 96.67 True fake: scaffold gap size wrong estimation (local) 60772594 60784183 303141 314687 NC_000014.9 scf7180000172742 99.43 True fake: scaffold gap size wrong estimation (local) 60784562 60802327 315063 332922 NC_000014.9 scf7180000172742 99.13 True fake: scaffold gap size wrong estimation (local) 60802409 60811315 333523 342209 NC_000014.9 scf7180000172742 97.34 True fake: scaffold gap size wrong estimation (local) 60811508 60831343 342374 362081 NC_000014.9 scf7180000172742 97.29 True fake: scaffold gap size wrong estimation (local) 60832177 60833312 362853 363987 NC_000014.9 scf7180000172742 98.15 True fake: scaffold gap size wrong estimation (local) 60833452 60834854 364098 365500 NC_000014.9 scf7180000172742 100.0 True relocation, scaffold gap is present, inconsistency = -30427079 30407796 30408762 365521 366487 NC_000014.9 scf7180000172742 99.79 True indel: indel (> 5bp) 30408845 30409928 366576 367659 NC_000014.9 scf7180000172742 98.25 True fake: scaffold gap size wrong estimation (local) 30410980 30413531 368553 371117 NC_000014.9 scf7180000172742 99.96 True fake: scaffold gap size wrong estimation (local) 30413903 30416471 371518 374086 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30416940 30434453 374428 391946 NC_000014.9 scf7180000172742 99.27 True fake: scaffold gap size wrong estimation (local) 30434682 30446512 392186 403982 NC_000014.9 scf7180000172742 99.34 True fake: scaffold gap size wrong estimation (local) 30446715 30474312 404140 431967 NC_000014.9 scf7180000172742 98.55 True fake: scaffold gap size wrong estimation (local) 30480054 30495190 440844 455791 NC_000014.9 scf7180000172742 98.64 True fake: scaffold gap size wrong estimation (local) 30495459 30529642 456038 490217 NC_000014.9 scf7180000172742 99.91 True fake: scaffold gap size wrong estimation (local) 30530060 30533261 490846 494064 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30533749 30535716 494456 496423 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30535861 30538631 496548 499318 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30538916 30539896 499579 500559 NC_000014.9 scf7180000172742 99.69 True indel: indel (<= 5bp) 30539897 30544479 500565 505147 NC_000014.9 scf7180000172742 99.54 True indel: indel (> 5bp) 30544480 30545542 505163 506225 NC_000014.9 scf7180000172742 98.59 True fake: scaffold gap size wrong estimation (local) 30545543 30546868 506246 507571 NC_000014.9 scf7180000172742 100.0 True local misassembly 30547271 30547929 507572 508230 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30547930 30549577 508636 510283 NC_000014.9 scf7180000172742 99.45 True fake: scaffold gap size wrong estimation (local) 30549578 30554365 510299 515086 NC_000014.9 scf7180000172742 100.0 True fake: scaffold gap size wrong estimation (local) 30554475 30557918 515193 518683 NC_000014.9 scf7180000172742 99.88 True fake: scaffold gap size wrong estimation (local) 30558191 30565656 518937 526396 NC_000014.9 scf7180000172742 99.89 True fake: scaffold gap size wrong estimation (local) 30565840 30574837 526535 535531 NC_000014.9 scf7180000172742 99.99 True fake: scaffold gap size wrong estimation (local) 30576079 30576594 536699 537214 NC_000014.9 scf7180000172742 99.81 True CONTIG scf7180000172742 537214 misassembled 57404279 57434756 32788 1185 NC_000014.9 scf7180000172743 96.42 True fake: scaffold gap size wrong estimation (local) 57403294 57404075 33708 32927 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 57399076 57402982 37842 33981 NC_000014.9 scf7180000172743 98.68 True fake: scaffold gap size wrong estimation (local) 57384315 57398649 52946 38268 NC_000014.9 scf7180000172743 97.95 True fake: scaffold gap size wrong estimation (local) 57380013 57384021 57171 53174 NC_000014.9 scf7180000172743 99.45 True fake: scaffold gap size wrong estimation (local) 57378362 57379734 58721 57345 NC_000014.9 scf7180000172743 99.56 True fake: scaffold gap size wrong estimation (local) 57373038 57378125 64001 58913 NC_000014.9 scf7180000172743 99.72 True fake: scaffold gap size wrong estimation (local) 57370575 57372825 66408 64090 NC_000014.9 scf7180000172743 97.56 True fake: scaffold gap size wrong estimation (local) 57369498 57370049 67094 66491 NC_000014.9 scf7180000172743 99.44 True fake: scaffold gap size wrong estimation (local) 57365703 57369027 70678 67354 NC_000014.9 scf7180000172743 99.73 True fake: scaffold gap size wrong estimation (local) 57351487 57364753 85090 71800 NC_000014.9 scf7180000172743 99.92 True fake: scaffold gap size wrong estimation (local) 57345828 57351243 90683 85280 NC_000014.9 scf7180000172743 99.72 True fake: scaffold gap size wrong estimation (local) 57343796 57345636 92822 90852 NC_000014.9 scf7180000172743 99.61 True fake: scaffold gap size wrong estimation (local) 57336066 57336859 97261 96468 NC_000014.9 scf7180000172743 100.0 True local misassembly 57337099 57338159 98342 97282 NC_000014.9 scf7180000172743 99.81 True fake: scaffold gap size wrong estimation (local) 57334587 57336056 100829 99360 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 57332098 57333307 103291 102082 NC_000014.9 scf7180000172743 99.59 True fake: scaffold gap size wrong estimation (local) 57331256 57331979 104105 103382 NC_000014.9 scf7180000172743 99.86 True fake: scaffold gap size wrong estimation (local) 57329193 57330756 107899 106337 NC_000014.9 scf7180000172743 98.98 True local misassembly 57326820 57328068 110244 108996 NC_000014.9 scf7180000172743 99.92 True indel: indel (<= 5bp) 57326298 57326819 110768 110247 NC_000014.9 scf7180000172743 96.17 True local misassembly 57325393 57326035 111411 110769 NC_000014.9 scf7180000172743 100.0 True relocation, scaffold gap is present, inconsistency = 32906923 90232979 90234627 111432 113080 NC_000014.9 scf7180000172743 99.88 True fake: scaffold gap size wrong estimation (local) 90236214 90237236 114914 115936 NC_000014.9 scf7180000172743 99.9 True relocation, scaffold gap is present, inconsistency = 32913010 57321170 57323183 117970 115957 NC_000014.9 scf7180000172743 99.85 True fake: scaffold gap size wrong estimation (local) 57311746 57320991 127347 118080 NC_000014.9 scf7180000172743 99.87 True fake: scaffold gap size wrong estimation (local) 57310724 57311460 128191 127455 NC_000014.9 scf7180000172743 99.86 True fake: scaffold gap size wrong estimation (local) 57280838 57310659 158186 128378 NC_000014.9 scf7180000172743 99.9 True fake: scaffold gap size wrong estimation (local) 57276412 57280647 162548 158346 NC_000014.9 scf7180000172743 99.19 True fake: scaffold gap size wrong estimation (local) 57270056 57276379 169089 162646 NC_000014.9 scf7180000172743 97.98 True fake: scaffold gap size wrong estimation (local) 57263750 57269932 175387 169205 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 57250016 57263578 189079 175500 NC_000014.9 scf7180000172743 99.88 True fake: scaffold gap size wrong estimation (local) 57245012 57249815 194109 189283 NC_000014.9 scf7180000172743 99.94 True fake: scaffold gap size wrong estimation (local) 57242142 57244820 196941 194263 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 57240550 57241879 198456 197127 NC_000014.9 scf7180000172743 99.92 True fake: scaffold gap size wrong estimation (local) 57186460 57240407 252350 198567 NC_000014.9 scf7180000172743 99.35 True fake: scaffold gap size wrong estimation (local) 57166255 57186273 272437 252514 NC_000014.9 scf7180000172743 99.4 True fake: scaffold gap size wrong estimation (local) 57152795 57166193 285897 272480 NC_000014.9 scf7180000172743 99.99 True relocation, inconsistency = 2517577 54634513 54635217 285898 286602 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54635656 54653455 286998 304771 NC_000014.9 scf7180000172743 99.75 True fake: scaffold gap size wrong estimation (local) 54653584 54675139 304862 326496 NC_000014.9 scf7180000172743 98.47 True fake: scaffold gap size wrong estimation (local) 54675375 54676360 326689 327674 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54676624 54678461 327889 329726 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54678822 54695707 330060 347209 NC_000014.9 scf7180000172743 97.89 True local misassembly 54695841 54700992 347210 352435 NC_000014.9 scf7180000172743 99.79 True fake: scaffold gap size wrong estimation (local) 54701169 54706356 352539 357725 NC_000014.9 scf7180000172743 99.6 True fake: scaffold gap size wrong estimation (local) 54706618 54762872 357960 414069 NC_000014.9 scf7180000172743 99.47 True fake: scaffold gap size wrong estimation (local) 54763234 54774692 414405 425883 NC_000014.9 scf7180000172743 99.85 True fake: scaffold gap size wrong estimation (local) 54774832 54793428 426006 444630 NC_000014.9 scf7180000172743 99.87 True fake: scaffold gap size wrong estimation (local) 54793558 54800743 444729 451907 NC_000014.9 scf7180000172743 99.39 True fake: scaffold gap size wrong estimation (local) 54800782 54821143 452006 472247 NC_000014.9 scf7180000172743 99.27 True fake: scaffold gap size wrong estimation (local) 54821341 54825693 472363 476717 NC_000014.9 scf7180000172743 99.84 True fake: scaffold gap size wrong estimation (local) 54826495 54831703 477422 482623 NC_000014.9 scf7180000172743 99.67 True fake: scaffold gap size wrong estimation (local) 54831952 54834517 482804 485369 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54834707 54835967 485532 486792 NC_000014.9 scf7180000172743 99.92 True fake: scaffold gap size wrong estimation (local) 54836046 54845370 486953 496230 NC_000014.9 scf7180000172743 96.35 True fake: scaffold gap size wrong estimation (local) 54845436 54848152 496377 499120 NC_000014.9 scf7180000172743 99.15 True fake: scaffold gap size wrong estimation (local) 54848345 54850139 499299 501093 NC_000014.9 scf7180000172743 99.89 True fake: scaffold gap size wrong estimation (local) 54852055 54853028 502797 503770 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54853158 54855396 503931 506169 NC_000014.9 scf7180000172743 99.96 True fake: scaffold gap size wrong estimation (local) 54855543 54858371 506388 509128 NC_000014.9 scf7180000172743 96.76 True fake: scaffold gap size wrong estimation (local) 54858530 54860664 509278 511430 NC_000014.9 scf7180000172743 99.72 True fake: scaffold gap size wrong estimation (local) 54860773 54861528 511636 512391 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54861723 54862385 512581 513243 NC_000014.9 scf7180000172743 99.85 True local misassembly 54862587 54863166 513244 513823 NC_000014.9 scf7180000172743 96.55 True fake: scaffold gap size wrong estimation (local) 54863512 54868635 514231 519392 NC_000014.9 scf7180000172743 99.84 True fake: scaffold gap size wrong estimation (local) 54870363 54871167 520809 521613 NC_000014.9 scf7180000172743 98.63 True fake: scaffold gap size wrong estimation (local) 54876496 54877551 526505 527560 NC_000014.9 scf7180000172743 99.91 True fake: scaffold gap size wrong estimation (local) 54877702 54879169 527812 529279 NC_000014.9 scf7180000172743 100.0 True fake: scaffold gap size wrong estimation (local) 54881035 54883160 530820 532945 NC_000014.9 scf7180000172743 99.72 True fake: scaffold gap size wrong estimation (local) 54883653 54886393 533501 536156 NC_000014.9 scf7180000172743 95.8 True fake: scaffold gap size wrong estimation (local) 54886549 54888530 536240 538248 NC_000014.9 scf7180000172743 99.55 True fake: scaffold gap size wrong estimation (local) 54888798 54890253 538575 540030 NC_000014.9 scf7180000172743 99.86 True local misassembly 54890404 54891243 540031 540870 NC_000014.9 scf7180000172743 97.14 True fake: scaffold gap size wrong estimation (local) 54892618 54896659 542100 546140 NC_000014.9 scf7180000172743 99.8 True fake: scaffold gap size wrong estimation (local) 54898054 54898659 547422 548027 NC_000014.9 scf7180000172743 99.83 True fake: scaffold gap size wrong estimation (local) 54898897 54900037 548111 549252 NC_000014.9 scf7180000172743 99.56 True fake: scaffold gap size wrong estimation (local) 54900345 54903868 549479 553201 NC_000014.9 scf7180000172743 99.32 True fake: scaffold gap size wrong estimation (local) 54904433 54906032 553816 555428 NC_000014.9 scf7180000172743 98.76 True fake: not a misassembly (possible transposable element) 55934901 55936148 556676 555429 NC_000014.9 scf7180000172743 100.0 True fake: not a misassembly (possible transposable element) 54906761 54908853 556697 558815 NC_000014.9 scf7180000172743 99.57 True fake: scaffold gap size wrong estimation (local) 54909205 54911967 559322 562101 NC_000014.9 scf7180000172743 99.93 True fake: scaffold gap size wrong estimation (local) 54912067 54912888 562255 563076 NC_000014.9 scf7180000172743 99.76 True fake: scaffold gap size wrong estimation (local) 54913470 54914553 563503 564586 NC_000014.9 scf7180000172743 99.63 True fake: scaffold gap size wrong estimation (local) 54914758 54915284 564982 565508 NC_000014.9 scf7180000172743 99.62 True fake: scaffold gap size wrong estimation (local) 54915680 54917177 565801 567326 NC_000014.9 scf7180000172743 99.27 True fake: scaffold gap size wrong estimation (local) 54918106 54919727 568241 569862 NC_000014.9 scf7180000172743 99.88 True fake: not a misassembly (possible transposable element) 74274771 74275844 570989 569916 NC_000014.9 scf7180000172743 99.81 True fake: not a misassembly (possible transposable element) 54921299 54922289 571527 572517 NC_000014.9 scf7180000172743 99.6 True relocation, inconsistency = 19349884 74272174 74272793 573137 572518 NC_000014.9 scf7180000172743 99.86 True CONTIG scf7180000172743 573177 misassembled 69132132 69133529 1209 2606 NC_000014.9 scf7180000172744 100.0 True relocation, scaffold gap is present, inconsistency = 21275603 90410197 90410968 4442 3671 NC_000014.9 scf7180000172744 99.74 True fake: scaffold gap size wrong estimation (local) 90394814 90410079 19934 4634 NC_000014.9 scf7180000172744 99.27 True fake: scaffold gap size wrong estimation (local) 90392103 90394584 22627 20133 NC_000014.9 scf7180000172744 99.68 True fake: scaffold gap size wrong estimation (local) 90385308 90391875 29395 22809 NC_000014.9 scf7180000172744 99.82 True fake: scaffold gap size wrong estimation (local) 90375205 90385193 39592 29532 NC_000014.9 scf7180000172744 99.86 True fake: scaffold gap size wrong estimation (local) 90373655 90374424 41155 40386 NC_000014.9 scf7180000172744 99.87 True fake: scaffold gap size wrong estimation (local) 90372625 90373348 41964 41241 NC_000014.9 scf7180000172744 99.72 True fake: scaffold gap size wrong estimation (local) 90356903 90372475 57499 42091 NC_000014.9 scf7180000172744 97.61 True fake: scaffold gap size wrong estimation (local) 90355961 90356818 58448 57591 NC_000014.9 scf7180000172744 99.42 True indel: indel (<= 5bp) 90354494 90355960 59919 58453 NC_000014.9 scf7180000172744 97.89 True fake: scaffold gap size wrong estimation (local) 90352421 90353225 62180 61376 NC_000014.9 scf7180000172744 95.4 True local misassembly 90350883 90351619 62917 62181 NC_000014.9 scf7180000172744 99.59 True fake: scaffold gap size wrong estimation (local) 90349445 90350317 64543 63671 NC_000014.9 scf7180000172744 97.71 True local misassembly 90348722 90349342 65164 64544 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 90346682 90347525 67215 66372 NC_000014.9 scf7180000172744 99.88 True fake: scaffold gap size wrong estimation (local) 90345827 90346488 67992 67331 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90343710 90345692 70255 68273 NC_000014.9 scf7180000172744 95.06 True fake: scaffold gap size wrong estimation (local) 90340620 90342107 73189 71744 NC_000014.9 scf7180000172744 96.66 True fake: scaffold gap size wrong estimation (local) 90339814 90340409 73933 73338 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90330105 90339556 83923 74316 NC_000014.9 scf7180000172744 98.49 True fake: scaffold gap size wrong estimation (local) 90328315 90329648 85648 84315 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90326502 90327808 87493 86187 NC_000014.9 scf7180000172744 99.92 True fake: scaffold gap size wrong estimation (local) 90325645 90326238 88283 87690 NC_000014.9 scf7180000172744 99.83 True fake: scaffold gap size wrong estimation (local) 90324523 90325587 89471 88387 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90321549 90324441 92429 89537 NC_000014.9 scf7180000172744 99.2 True local misassembly 90320052 90321346 93724 92430 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90318630 90320051 95777 94356 NC_000014.9 scf7180000172744 98.38 True indel: indel (> 5bp) 90315965 90318555 98368 95778 NC_000014.9 scf7180000172744 99.92 True fake: scaffold gap size wrong estimation (local) 90313277 90315040 101060 99297 NC_000014.9 scf7180000172744 99.89 True fake: scaffold gap size wrong estimation (local) 90306776 90313123 107585 101257 NC_000014.9 scf7180000172744 99.27 True fake: scaffold gap size wrong estimation (local) 90299196 90306565 115509 107752 NC_000014.9 scf7180000172744 99.82 True fake: scaffold gap size wrong estimation (local) 90297943 90299080 116739 115602 NC_000014.9 scf7180000172744 99.91 True fake: scaffold gap size wrong estimation (local) 90289857 90297684 124743 116914 NC_000014.9 scf7180000172744 99.9 True fake: scaffold gap size wrong estimation (local) 90287059 90289621 127559 124997 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90285575 90286873 129154 127839 NC_000014.9 scf7180000172744 99.77 True fake: scaffold gap size wrong estimation (local) 90284585 90285269 130053 129369 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 90274802 90283807 139512 130733 NC_000014.9 scf7180000172744 97.21 True fake: not a misassembly (possible transposable element) 28065532 28066101 139513 140082 NC_000014.9 scf7180000172744 100.0 True fake: not a misassembly (possible transposable element) 90272167 90276027 143831 140103 NC_000014.9 scf7180000172744 96.15 True fake: scaffold gap size wrong estimation (local) 90267395 90271894 148623 144116 NC_000014.9 scf7180000172744 99.65 True fake: scaffold gap size wrong estimation (local) 90265751 90267146 150208 148813 NC_000014.9 scf7180000172744 99.57 True fake: scaffold gap size wrong estimation (local) 90262189 90265445 153702 150506 NC_000014.9 scf7180000172744 97.97 True fake: scaffold gap size wrong estimation (local) 90260693 90261682 155252 154263 NC_000014.9 scf7180000172744 99.8 True fake: scaffold gap size wrong estimation (local) 90259863 90260487 156163 155538 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 90257854 90259686 158104 156272 NC_000014.9 scf7180000172744 99.89 True fake: scaffold gap size wrong estimation (local) 90251273 90257725 164940 158222 NC_000014.9 scf7180000172744 98.95 True fake: scaffold gap size wrong estimation (local) 90249270 90250779 166782 165273 NC_000014.9 scf7180000172744 99.67 True fake: scaffold gap size wrong estimation (local) 90246959 90249055 169060 166969 NC_000014.9 scf7180000172744 99.71 True relocation, scaffold gap is present, inconsistency = 53550980 36673110 36693765 191954 171274 NC_000014.9 scf7180000172744 99.85 True fake: scaffold gap size wrong estimation (local) 36668655 36672791 196338 192203 NC_000014.9 scf7180000172744 99.93 True fake: scaffold gap size wrong estimation (local) 36643620 36668451 221470 196544 NC_000014.9 scf7180000172744 99.9 True fake: scaffold gap size wrong estimation (local) 36637848 36643110 227146 221884 NC_000014.9 scf7180000172744 99.77 True fake: scaffold gap size wrong estimation (local) 36633356 36636988 231594 227962 NC_000014.9 scf7180000172744 99.89 True fake: scaffold gap size wrong estimation (local) 36629467 36632436 235372 232262 NC_000014.9 scf7180000172744 99.42 True fake: scaffold gap size wrong estimation (local) 36611790 36629250 253057 235623 NC_000014.9 scf7180000172744 99.37 True fake: scaffold gap size wrong estimation (local) 36608775 36610301 255940 254414 NC_000014.9 scf7180000172744 99.87 True fake: scaffold gap size wrong estimation (local) 36603772 36608183 260953 256531 NC_000014.9 scf7180000172744 99.64 True fake: scaffold gap size wrong estimation (local) 36572754 36603316 291948 261276 NC_000014.9 scf7180000172744 99.79 True fake: scaffold gap size wrong estimation (local) 36569953 36572601 294691 292043 NC_000014.9 scf7180000172744 99.77 True fake: scaffold gap size wrong estimation (local) 36559348 36569710 305250 294889 NC_000014.9 scf7180000172744 99.77 True fake: scaffold gap size wrong estimation (local) 36545004 36559151 319592 305377 NC_000014.9 scf7180000172744 99.24 True fake: scaffold gap size wrong estimation (local) 36537329 36544660 327450 320093 NC_000014.9 scf7180000172744 99.69 True fake: scaffold gap size wrong estimation (local) 36533105 36537204 331666 327553 NC_000014.9 scf7180000172744 99.93 True fake: scaffold gap size wrong estimation (local) 36490314 36532958 374374 331795 NC_000014.9 scf7180000172744 99.58 True indel: indel (> 5bp) 36487431 36490198 377283 374516 NC_000014.9 scf7180000172744 99.6 True fake: scaffold gap size wrong estimation (local) 36476473 36487218 388611 377794 NC_000014.9 scf7180000172744 99.48 True fake: scaffold gap size wrong estimation (local) 36474455 36476178 390562 388839 NC_000014.9 scf7180000172744 99.71 True fake: scaffold gap size wrong estimation (local) 36468076 36474234 397140 390718 NC_000014.9 scf7180000172744 96.17 True fake: scaffold gap size wrong estimation (local) 36448706 36467830 416307 397242 NC_000014.9 scf7180000172744 99.59 True fake: scaffold gap size wrong estimation (local) 36444972 36448465 420039 416546 NC_000014.9 scf7180000172744 99.74 True fake: scaffold gap size wrong estimation (local) 36440491 36444787 424451 420123 NC_000014.9 scf7180000172744 99.58 True fake: scaffold gap size wrong estimation (local) 36436556 36440280 428270 424546 NC_000014.9 scf7180000172744 99.89 True fake: scaffold gap size wrong estimation (local) 36432601 36434395 432179 430385 NC_000014.9 scf7180000172744 99.94 True fake: scaffold gap size wrong estimation (local) 36427484 36431717 437194 432961 NC_000014.9 scf7180000172744 99.72 True fake: scaffold gap size wrong estimation (local) 36417742 36427778 447542 437401 NC_000014.9 scf7180000172744 99.58 True relocation, scaffold gap is present, inconsistency = 14611121 21788862 21805571 465379 448592 NC_000014.9 scf7180000172744 98.76 True fake: scaffold gap size wrong estimation (local) 21787943 21788444 466246 465745 NC_000014.9 scf7180000172744 96.02 True fake: scaffold gap size wrong estimation (local) 21785528 21787133 468524 466921 NC_000014.9 scf7180000172744 99.75 True fake: scaffold gap size wrong estimation (local) 21782285 21785327 471746 468704 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 21779042 21782167 475075 471824 NC_000014.9 scf7180000172744 95.68 True relocation, inconsistency = 28430257 50212425 50213683 475076 476334 NC_000014.9 scf7180000172744 99.53 True fake: scaffold gap size wrong estimation (local) 50214852 50217700 477479 480324 NC_000014.9 scf7180000172744 99.65 True fake: scaffold gap size wrong estimation (local) 50218222 50220194 480708 482858 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 50220422 50223489 483059 486126 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 50224346 50227255 487055 489964 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50227348 50228143 490077 490872 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50228210 50231442 490951 494182 NC_000014.9 scf7180000172744 99.94 True fake: scaffold gap size wrong estimation (local) 50231491 50233696 494203 496441 NC_000014.9 scf7180000172744 99.91 True fake: scaffold gap size wrong estimation (local) 50234478 50236381 497268 499171 NC_000014.9 scf7180000172744 98.63 True fake: scaffold gap size wrong estimation (local) 50244325 50245888 503993 505556 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50246459 50249731 506115 509387 NC_000014.9 scf7180000172744 99.88 True fake: not a misassembly (possible transposable element) 60450102 60451290 509388 510576 NC_000014.9 scf7180000172744 99.67 True fake: not a misassembly (possible transposable element) 50250129 50254824 510619 515314 NC_000014.9 scf7180000172744 99.94 True fake: scaffold gap size wrong estimation (local) 50256520 50257055 516394 516929 NC_000014.9 scf7180000172744 100.0 True local misassembly 50255525 50256534 516950 517959 NC_000014.9 scf7180000172744 99.7 True fake: not a misassembly (possible transposable element) 65340851 65341593 518702 517960 NC_000014.9 scf7180000172744 99.87 True fake: not a misassembly (possible transposable element) 50257392 50259377 518833 520842 NC_000014.9 scf7180000172744 99.9 True relocation, scaffold gap is present, inconsistency = 15078611 65338075 65339101 521955 520929 NC_000014.9 scf7180000172744 99.81 True fake: scaffold gap size wrong estimation (local) 65331500 65337816 528569 522251 NC_000014.9 scf7180000172744 99.86 True fake: scaffold gap size wrong estimation (local) 65326975 65331308 533054 528718 NC_000014.9 scf7180000172744 99.63 True fake: scaffold gap size wrong estimation (local) 65325587 65326815 534422 533194 NC_000014.9 scf7180000172744 99.67 True relocation, scaffold gap is present, inconsistency = 15058399 50266102 50267167 534443 535550 NC_000014.9 scf7180000172744 96.88 True fake: scaffold gap size wrong estimation (local) 50267429 50279923 535796 548432 NC_000014.9 scf7180000172744 97.24 True fake: scaffold gap size wrong estimation (local) 50280396 50287700 548746 556070 NC_000014.9 scf7180000172744 99.93 True fake: scaffold gap size wrong estimation (local) 50287960 50288586 556377 557003 NC_000014.9 scf7180000172744 99.84 True fake: scaffold gap size wrong estimation (local) 50288706 50290006 557128 558428 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50290137 50290945 558574 559382 NC_000014.9 scf7180000172744 99.63 True fake: scaffold gap size wrong estimation (local) 50291228 50292529 559652 560953 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50292862 50295582 561254 563974 NC_000014.9 scf7180000172744 99.89 True fake: scaffold gap size wrong estimation (local) 50296609 50298209 564995 566595 NC_000014.9 scf7180000172744 99.81 True fake: scaffold gap size wrong estimation (local) 50298676 50300293 567203 568820 NC_000014.9 scf7180000172744 99.94 True fake: scaffold gap size wrong estimation (local) 50300536 50303193 568935 571592 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50303812 50304659 572227 573074 NC_000014.9 scf7180000172744 100.0 True local misassembly 50304779 50306209 573075 574505 NC_000014.9 scf7180000172744 98.11 True fake: scaffold gap size wrong estimation (local) 50306614 50308264 574812 576448 NC_000014.9 scf7180000172744 98.96 True fake: scaffold gap size wrong estimation (local) 50308404 50309342 576628 577566 NC_000014.9 scf7180000172744 100.0 True indel: indel (<= 5bp) 50309455 50310944 577682 579192 NC_000014.9 scf7180000172744 99.8 True fake: scaffold gap size wrong estimation (local) 50311183 50314370 579412 582599 NC_000014.9 scf7180000172744 99.97 True fake: scaffold gap size wrong estimation (local) 50315688 50323111 584056 591410 NC_000014.9 scf7180000172744 99.02 True fake: scaffold gap size wrong estimation (local) 50323654 50324888 591787 593021 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50325047 50325978 593230 594161 NC_000014.9 scf7180000172744 100.0 True fake: scaffold gap size wrong estimation (local) 50326233 50327350 594446 595563 NC_000014.9 scf7180000172744 99.91 True fake: scaffold gap size wrong estimation (local) 50327646 50341459 595818 609556 NC_000014.9 scf7180000172744 97.03 True fake: scaffold gap size wrong estimation (local) 50341620 50344487 609577 612601 NC_000014.9 scf7180000172744 99.65 True CONTIG scf7180000172744 612601 misassembled 40332199 40335519 428 3749 NC_000014.9 scf7180000172745 99.61 True fake: not a misassembly (possible transposable element) 67257344 67258278 3750 4684 NC_000014.9 scf7180000172745 100.0 True fake: not a misassembly (possible transposable element) 40335715 40345913 4705 14763 NC_000014.9 scf7180000172745 98.54 True fake: scaffold gap size wrong estimation (local) 40346181 40348435 14949 17203 NC_000014.9 scf7180000172745 99.96 True fake: scaffold gap size wrong estimation (local) 40354117 40377078 20858 43972 NC_000014.9 scf7180000172745 99.54 True fake: scaffold gap size wrong estimation (local) 40381745 40387948 48246 54474 NC_000014.9 scf7180000172745 99.94 True fake: scaffold gap size wrong estimation (local) 40388277 40413636 54704 80085 NC_000014.9 scf7180000172745 99.67 True fake: scaffold gap size wrong estimation (local) 40413718 40422414 80434 89238 NC_000014.9 scf7180000172745 99.61 True fake: scaffold gap size wrong estimation (local) 40424398 40439404 90950 105955 NC_000014.9 scf7180000172745 99.81 True fake: scaffold gap size wrong estimation (local) 40439705 40451266 106222 117610 NC_000014.9 scf7180000172745 98.3 True fake: scaffold gap size wrong estimation (local) 40451463 40454253 117931 120720 NC_000014.9 scf7180000172745 99.93 True fake: scaffold gap size wrong estimation (local) 40455651 40492177 122010 158522 NC_000014.9 scf7180000172745 99.66 True fake: scaffold gap size wrong estimation (local) 40492396 40527332 158720 193893 NC_000014.9 scf7180000172745 98.77 True fake: scaffold gap size wrong estimation (local) 40527938 40537275 194460 203809 NC_000014.9 scf7180000172745 99.68 True fake: scaffold gap size wrong estimation (local) 40538363 40544336 204773 210975 NC_000014.9 scf7180000172745 96.56 True fake: scaffold gap size wrong estimation (local) 40544808 40553025 211286 219503 NC_000014.9 scf7180000172745 99.81 True fake: scaffold gap size wrong estimation (local) 40553430 40556770 219789 223131 NC_000014.9 scf7180000172745 99.55 True fake: scaffold gap size wrong estimation (local) 40556850 40559780 223527 226454 NC_000014.9 scf7180000172745 99.66 True fake: not a misassembly (possible transposable element) 39727841 39728482 226455 227091 NC_000014.9 scf7180000172745 99.16 True fake: not a misassembly (possible transposable element) 40560224 40562507 227543 229826 NC_000014.9 scf7180000172745 99.69 True fake: scaffold gap size wrong estimation (local) 40562508 40563044 230096 230632 NC_000014.9 scf7180000172745 99.44 True indel: indel (<= 5bp) 40563046 40563854 230633 231441 NC_000014.9 scf7180000172745 99.63 True fake: scaffold gap size wrong estimation (local) 40565672 40591677 233150 259168 NC_000014.9 scf7180000172745 99.48 True fake: scaffold gap size wrong estimation (local) 40591809 40606132 259318 273606 NC_000014.9 scf7180000172745 99.14 True fake: scaffold gap size wrong estimation (local) 40610704 40613464 278205 280965 NC_000014.9 scf7180000172745 99.71 True indel: indel (<= 5bp) 40613553 40620057 281049 287553 NC_000014.9 scf7180000172745 99.92 True fake: scaffold gap size wrong estimation (local) 40620207 40629595 287631 297019 NC_000014.9 scf7180000172745 99.95 True fake: scaffold gap size wrong estimation (local) 40629763 40641269 297114 308649 NC_000014.9 scf7180000172745 99.3 True fake: scaffold gap size wrong estimation (local) 40641579 40678975 309038 346360 NC_000014.9 scf7180000172745 98.5 True fake: scaffold gap size wrong estimation (local) 40679090 40711291 346447 378697 NC_000014.9 scf7180000172745 99.85 True fake: scaffold gap size wrong estimation (local) 40711473 40716929 378773 384229 NC_000014.9 scf7180000172745 99.87 True fake: scaffold gap size wrong estimation (local) 40717671 40718964 384980 386273 NC_000014.9 scf7180000172745 99.69 True relocation, scaffold gap is present, inconsistency = -15350738 25369300 25404061 387347 422272 NC_000014.9 scf7180000172745 98.77 True fake: scaffold gap size wrong estimation (local) 25405394 25408226 423472 426304 NC_000014.9 scf7180000172745 99.86 True fake: scaffold gap size wrong estimation (local) 25408349 25422103 426438 440128 NC_000014.9 scf7180000172745 99.18 True fake: scaffold gap size wrong estimation (local) 25422175 25424004 440190 442019 NC_000014.9 scf7180000172745 99.34 True fake: scaffold gap size wrong estimation (local) 25424418 25427846 442411 445842 NC_000014.9 scf7180000172745 98.78 True relocation, scaffold gap is present, inconsistency = 47701028 73129030 73131371 445998 448340 NC_000014.9 scf7180000172745 99.83 True fake: scaffold gap size wrong estimation (local) 73133136 73138020 450232 455172 NC_000014.9 scf7180000172745 99.36 True fake: scaffold gap size wrong estimation (local) 73139297 73140208 456469 457380 NC_000014.9 scf7180000172745 100.0 True local misassembly 73140404 73141858 457381 458835 NC_000014.9 scf7180000172745 95.05 True fake: scaffold gap size wrong estimation (local) 73142025 73143996 459120 461091 NC_000014.9 scf7180000172745 99.9 True fake: scaffold gap size wrong estimation (local) 73144276 73147119 461387 464266 NC_000014.9 scf7180000172745 96.06 True fake: scaffold gap size wrong estimation (local) 73147225 73150511 464360 467565 NC_000014.9 scf7180000172745 97.46 True fake: scaffold gap size wrong estimation (local) 73151044 73151888 468238 469082 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73153937 73156128 470876 473067 NC_000014.9 scf7180000172745 99.95 True fake: scaffold gap size wrong estimation (local) 73157266 73157916 474157 474807 NC_000014.9 scf7180000172745 98.46 True fake: scaffold gap size wrong estimation (local) 73158468 73161895 475422 478915 NC_000014.9 scf7180000172745 99.97 True fake: scaffold gap size wrong estimation (local) 73162145 73165486 479058 482398 NC_000014.9 scf7180000172745 99.88 True fake: scaffold gap size wrong estimation (local) 73166050 73167829 482908 484687 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73168135 73169832 485022 486719 NC_000014.9 scf7180000172745 98.82 True indel: indel (> 5bp) 73169878 73171760 486720 488602 NC_000014.9 scf7180000172745 98.73 True fake: scaffold gap size wrong estimation (local) 73171761 73174408 489113 491760 NC_000014.9 scf7180000172745 100.0 True indel: indel (> 5bp) 73174485 73175063 491761 492339 NC_000014.9 scf7180000172745 96.55 True fake: scaffold gap size wrong estimation (local) 73175454 73181241 492740 498367 NC_000014.9 scf7180000172745 95.3 True fake: scaffold gap size wrong estimation (local) 73181342 73183316 498483 500457 NC_000014.9 scf7180000172745 99.9 True fake: scaffold gap size wrong estimation (local) 73185503 73186286 502498 503281 NC_000014.9 scf7180000172745 96.94 True local misassembly 73186685 73187989 503282 504586 NC_000014.9 scf7180000172745 99.77 True fake: scaffold gap size wrong estimation (local) 73188121 73188958 504784 505621 NC_000014.9 scf7180000172745 99.88 True fake: scaffold gap size wrong estimation (local) 73189027 73194548 506065 511790 NC_000014.9 scf7180000172745 96.49 True fake: scaffold gap size wrong estimation (local) 73195380 73196475 512716 513811 NC_000014.9 scf7180000172745 97.99 True fake: scaffold gap size wrong estimation (local) 73197208 73199817 514464 517073 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73199907 73200937 517408 518438 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73201359 73201962 518853 519456 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73203331 73204049 520031 520749 NC_000014.9 scf7180000172745 100.0 True local misassembly 73204263 73204779 520750 521266 NC_000014.9 scf7180000172745 96.13 True fake: scaffold gap size wrong estimation (local) 73204793 73212095 521731 528797 NC_000014.9 scf7180000172745 96.73 True fake: scaffold gap size wrong estimation (local) 73212313 73217942 528896 534658 NC_000014.9 scf7180000172745 96.65 True fake: scaffold gap size wrong estimation (local) 73218108 73224624 534818 541340 NC_000014.9 scf7180000172745 99.85 True fake: scaffold gap size wrong estimation (local) 73224714 73225857 541474 542617 NC_000014.9 scf7180000172745 100.0 True fake: scaffold gap size wrong estimation (local) 73226141 73229766 542777 546402 NC_000014.9 scf7180000172745 99.94 True fake: scaffold gap size wrong estimation (local) 73230031 73231006 546678 547653 NC_000014.9 scf7180000172745 99.8 True fake: scaffold gap size wrong estimation (local) 73231041 73247749 547789 564416 NC_000014.9 scf7180000172745 99.3 True fake: scaffold gap size wrong estimation (local) 73247981 73249434 564646 566095 NC_000014.9 scf7180000172745 99.72 True fake: scaffold gap size wrong estimation (local) 73249689 73256374 566302 572988 NC_000014.9 scf7180000172745 99.97 True fake: scaffold gap size wrong estimation (local) 73256534 73271549 573150 588025 NC_000014.9 scf7180000172745 98.41 True fake: scaffold gap size wrong estimation (local) 73271566 73273049 588103 589523 NC_000014.9 scf7180000172745 95.56 True fake: scaffold gap size wrong estimation (local) 73273518 73277774 589922 594178 NC_000014.9 scf7180000172745 99.95 True local misassembly 73278069 73278834 594179 595142 NC_000014.9 scf7180000172745 99.21 True fake: scaffold gap size wrong estimation (local) 73278945 73280703 595235 596982 NC_000014.9 scf7180000172745 99.01 True fake: scaffold gap size wrong estimation (local) 73280862 73285676 597161 602026 NC_000014.9 scf7180000172745 99.13 True fake: scaffold gap size wrong estimation (local) 73286250 73288307 602586 604642 NC_000014.9 scf7180000172745 99.95 True fake: scaffold gap size wrong estimation (local) 73288777 73291129 605077 607429 NC_000014.9 scf7180000172745 99.79 True fake: scaffold gap size wrong estimation (local) 73292075 73293403 608374 609702 NC_000014.9 scf7180000172745 99.85 True fake: scaffold gap size wrong estimation (local) 73293652 73294780 609805 610933 NC_000014.9 scf7180000172745 99.91 True fake: scaffold gap size wrong estimation (local) 73295080 73296196 612276 613392 NC_000014.9 scf7180000172745 99.91 True fake: scaffold gap size wrong estimation (local) 73297109 73302631 614321 619804 NC_000014.9 scf7180000172745 97.47 True fake: scaffold gap size wrong estimation (local) 73303408 73304968 620665 622228 NC_000014.9 scf7180000172745 99.62 True CONTIG scf7180000172745 622228 misassembled 42867199 42868905 1 1707 NC_000014.9 scf7180000172746 100.0 True relocation, inconsistency = 44491898 87360804 87372597 13472 1708 NC_000014.9 scf7180000172746 99.66 True indel: indel (> 5bp) 87360079 87360588 14210 13701 NC_000014.9 scf7180000172746 99.61 True fake: scaffold gap size wrong estimation (local) 87318993 87354970 57076 21084 NC_000014.9 scf7180000172746 99.41 True fake: scaffold gap size wrong estimation (local) 87316107 87318739 59949 57290 NC_000014.9 scf7180000172746 99.43 True fake: scaffold gap size wrong estimation (local) 87293612 87314902 82282 60973 NC_000014.9 scf7180000172746 99.71 True fake: scaffold gap size wrong estimation (local) 87283544 87293423 92370 82445 NC_000014.9 scf7180000172746 99.25 True fake: scaffold gap size wrong estimation (local) 87275591 87283278 100093 92543 NC_000014.9 scf7180000172746 97.89 True fake: scaffold gap size wrong estimation (local) 87250225 87275107 125120 100501 NC_000014.9 scf7180000172746 98.6 True fake: scaffold gap size wrong estimation (local) 87247177 87250057 128293 125408 NC_000014.9 scf7180000172746 99.55 True indel: indel (<= 5bp) 87238883 87247105 136579 128369 NC_000014.9 scf7180000172746 99.28 True fake: scaffold gap size wrong estimation (local) 87238045 87238761 138374 137658 NC_000014.9 scf7180000172746 98.88 True fake: scaffold gap size wrong estimation (local) 87236226 87237890 140064 138400 NC_000014.9 scf7180000172746 98.98 True indel: indel (<= 5bp) 87234882 87236225 141409 140066 NC_000014.9 scf7180000172746 97.69 True indel: indel (<= 5bp) 87232381 87234881 143911 141411 NC_000014.9 scf7180000172746 99.76 True indel: indel (> 5bp) 87223092 87232350 153170 143912 NC_000014.9 scf7180000172746 99.79 True fake: scaffold gap size wrong estimation (local) 87222486 87223091 153786 153181 NC_000014.9 scf7180000172746 99.83 True fake: scaffold gap size wrong estimation (local) 87221583 87222273 154687 153997 NC_000014.9 scf7180000172746 99.86 True fake: scaffold gap size wrong estimation (local) 87188952 87221386 187178 154836 NC_000014.9 scf7180000172746 99.05 True fake: scaffold gap size wrong estimation (local) 87182208 87188749 193852 187311 NC_000014.9 scf7180000172746 99.92 True fake: scaffold gap size wrong estimation (local) 87172034 87182039 203954 193986 NC_000014.9 scf7180000172746 98.6 True fake: scaffold gap size wrong estimation (local) 87169472 87170211 207126 206387 NC_000014.9 scf7180000172746 99.86 True fake: scaffold gap size wrong estimation (local) 87167479 87168454 208913 207938 NC_000014.9 scf7180000172746 99.8 True fake: scaffold gap size wrong estimation (local) 87166165 87167226 210001 208940 NC_000014.9 scf7180000172746 100.0 True indel: indel (<= 5bp) 87164201 87166162 211963 210002 NC_000014.9 scf7180000172746 99.95 True indel: indel (> 5bp) 87162471 87164119 213612 211964 NC_000014.9 scf7180000172746 99.94 True fake: scaffold gap size wrong estimation (local) 87159808 87162215 216394 213962 NC_000014.9 scf7180000172746 99.63 True fake: scaffold gap size wrong estimation (local) 87155489 87159668 220714 216534 NC_000014.9 scf7180000172746 99.93 True fake: scaffold gap size wrong estimation (local) 87151646 87155235 224475 220886 NC_000014.9 scf7180000172746 99.97 True fake: scaffold gap size wrong estimation (local) 87138072 87151504 238020 224579 NC_000014.9 scf7180000172746 99.55 True fake: scaffold gap size wrong estimation (local) 87131038 87137955 244950 238153 NC_000014.9 scf7180000172746 98.15 True fake: scaffold gap size wrong estimation (local) 87125310 87130802 250623 245162 NC_000014.9 scf7180000172746 99.32 True fake: scaffold gap size wrong estimation (local) 87119057 87125063 256862 250841 NC_000014.9 scf7180000172746 99.95 True fake: scaffold gap size wrong estimation (local) 87103461 87118836 272360 257029 NC_000014.9 scf7180000172746 99.62 True fake: scaffold gap size wrong estimation (local) 87094277 87103631 282078 272695 NC_000014.9 scf7180000172746 99.97 True fake: scaffold gap size wrong estimation (local) 87089861 87094179 286584 282271 NC_000014.9 scf7180000172746 99.81 True fake: scaffold gap size wrong estimation (local) 87072501 87089583 303887 286794 NC_000014.9 scf7180000172746 99.89 True fake: scaffold gap size wrong estimation (local) 87056950 87072334 319325 303998 NC_000014.9 scf7180000172746 99.53 True fake: scaffold gap size wrong estimation (local) 87054982 87056661 321247 319568 NC_000014.9 scf7180000172746 99.82 True fake: scaffold gap size wrong estimation (local) 87048138 87053872 327967 322233 NC_000014.9 scf7180000172746 99.9 True fake: scaffold gap size wrong estimation (local) 87039840 87047938 336215 328119 NC_000014.9 scf7180000172746 99.65 True fake: not a misassembly (possible transposable element) 42012146 42013286 337376 336236 NC_000014.9 scf7180000172746 100.0 True fake: not a misassembly (possible transposable element) 87026470 87039941 350743 337377 NC_000014.9 scf7180000172746 98.97 True fake: scaffold gap size wrong estimation (local) 87021524 87026199 355613 350938 NC_000014.9 scf7180000172746 99.87 True fake: scaffold gap size wrong estimation (local) 87019079 87021298 357987 355768 NC_000014.9 scf7180000172746 100.0 True fake: scaffold gap size wrong estimation (local) 87016421 87018947 360656 358130 NC_000014.9 scf7180000172746 100.0 True fake: scaffold gap size wrong estimation (local) 86996863 87016291 380188 360796 NC_000014.9 scf7180000172746 99.76 True fake: scaffold gap size wrong estimation (local) 86980288 86996657 396818 380427 NC_000014.9 scf7180000172746 99.56 True fake: scaffold gap size wrong estimation (local) 86969474 86980098 407315 397086 NC_000014.9 scf7180000172746 96.16 True fake: scaffold gap size wrong estimation (local) 86967196 86969499 409943 407640 NC_000014.9 scf7180000172746 99.96 True fake: scaffold gap size wrong estimation (local) 86965922 86966798 411628 410752 NC_000014.9 scf7180000172746 100.0 True fake: scaffold gap size wrong estimation (local) 86964760 86965708 412656 411708 NC_000014.9 scf7180000172746 99.79 True fake: scaffold gap size wrong estimation (local) 86949332 86963460 428040 413912 NC_000014.9 scf7180000172746 99.97 True fake: scaffold gap size wrong estimation (local) 86931911 86949140 445372 428177 NC_000014.9 scf7180000172746 99.14 True fake: scaffold gap size wrong estimation (local) 86920712 86931749 456496 445459 NC_000014.9 scf7180000172746 99.99 True fake: scaffold gap size wrong estimation (local) 86913956 86920616 463225 456561 NC_000014.9 scf7180000172746 99.94 True fake: scaffold gap size wrong estimation (local) 86889459 86913708 487426 463431 NC_000014.9 scf7180000172746 98.81 True fake: scaffold gap size wrong estimation (local) 86886816 86888681 490039 488174 NC_000014.9 scf7180000172746 99.95 True fake: scaffold gap size wrong estimation (local) 86882133 86883781 494600 492952 NC_000014.9 scf7180000172746 99.94 True fake: scaffold gap size wrong estimation (local) 86879751 86881927 497117 494989 NC_000014.9 scf7180000172746 97.34 True fake: scaffold gap size wrong estimation (local) 86875182 86878349 501713 498378 NC_000014.9 scf7180000172746 99.94 True fake: scaffold gap size wrong estimation (local) 86865773 86874898 511091 502004 NC_000014.9 scf7180000172746 98.71 True fake: scaffold gap size wrong estimation (local) 86857232 86865582 519601 511231 NC_000014.9 scf7180000172746 99.83 True relocation, inconsistency = 18017562 68837121 68839669 522208 519602 NC_000014.9 scf7180000172746 99.73 True fake: scaffold gap size wrong estimation (local) 68835363 68836764 524078 522677 NC_000014.9 scf7180000172746 99.79 True fake: scaffold gap size wrong estimation (local) 68833446 68835050 526026 524422 NC_000014.9 scf7180000172746 98.75 True local misassembly 68832680 68833303 526650 526027 NC_000014.9 scf7180000172746 99.68 True fake: scaffold gap size wrong estimation (local) 68829886 68830989 529533 528430 NC_000014.9 scf7180000172746 99.55 True fake: scaffold gap size wrong estimation (local) 68827725 68829641 531787 529862 NC_000014.9 scf7180000172746 99.63 True fake: scaffold gap size wrong estimation (local) 68812114 68827540 547190 531935 NC_000014.9 scf7180000172746 98.76 True fake: scaffold gap size wrong estimation (local) 68806363 68811875 552880 547368 NC_000014.9 scf7180000172746 99.93 True fake: scaffold gap size wrong estimation (local) 68799665 68806135 559549 553079 NC_000014.9 scf7180000172746 99.45 True fake: scaffold gap size wrong estimation (local) 68777257 68798324 581908 560820 NC_000014.9 scf7180000172746 99.83 True fake: scaffold gap size wrong estimation (local) 68769676 68777076 589600 582169 NC_000014.9 scf7180000172746 99.69 True fake: scaffold gap size wrong estimation (local) 68763364 68769467 595916 589788 NC_000014.9 scf7180000172746 99.9 True CONTIG scf7180000172746 595916 misassembled 53271550 53280266 1 8665 NC_000014.9 scf7180000172747 99.29 True fake: scaffold gap size wrong estimation (local) 53280652 53284738 9008 13096 NC_000014.9 scf7180000172747 99.88 True fake: scaffold gap size wrong estimation (local) 53284982 53298467 13237 26732 NC_000014.9 scf7180000172747 99.87 True fake: scaffold gap size wrong estimation (local) 53303150 53310891 33830 41620 NC_000014.9 scf7180000172747 99.79 True fake: scaffold gap size wrong estimation (local) 53311032 53312801 41799 43567 NC_000014.9 scf7180000172747 99.77 True fake: scaffold gap size wrong estimation (local) 53312771 53313661 44262 45152 NC_000014.9 scf7180000172747 100.0 True fake: scaffold gap size wrong estimation (local) 53314243 53314979 45416 46152 NC_000014.9 scf7180000172747 99.59 True fake: scaffold gap size wrong estimation (local) 53314980 53318253 46706 49979 NC_000014.9 scf7180000172747 99.79 True fake: scaffold gap size wrong estimation (local) 53319067 53319630 50653 51216 NC_000014.9 scf7180000172747 99.47 True fake: scaffold gap size wrong estimation (local) 53323959 53339173 55329 70561 NC_000014.9 scf7180000172747 99.78 True fake: scaffold gap size wrong estimation (local) 53339421 53341203 70746 72528 NC_000014.9 scf7180000172747 99.89 True indel: indel (<= 5bp) 53341205 53341782 72529 73106 NC_000014.9 scf7180000172747 100.0 True indel: indel (<= 5bp) 53341786 53343104 73107 74425 NC_000014.9 scf7180000172747 99.7 True fake: scaffold gap size wrong estimation (local) 53343838 53345643 75465 77270 NC_000014.9 scf7180000172747 99.5 True fake: scaffold gap size wrong estimation (local) 53345859 53347696 77439 79276 NC_000014.9 scf7180000172747 99.78 True fake: scaffold gap size wrong estimation (local) 53348000 53361947 79494 93448 NC_000014.9 scf7180000172747 98.97 True indel: indel (<= 5bp) 53362009 53364015 93511 95543 NC_000014.9 scf7180000172747 98.86 True fake: scaffold gap size wrong estimation (local) 53364547 53393291 96097 125117 NC_000014.9 scf7180000172747 98.96 True fake: scaffold gap size wrong estimation (local) 53394063 53402192 125895 134024 NC_000014.9 scf7180000172747 99.94 True indel: indel (<= 5bp) 53402194 53406906 134025 138737 NC_000014.9 scf7180000172747 99.41 True fake: scaffold gap size wrong estimation (local) 53406907 53407673 140381 141147 NC_000014.9 scf7180000172747 97.65 True indel: indel (> 5bp) 53407674 53425426 141158 158910 NC_000014.9 scf7180000172747 99.92 True fake: scaffold gap size wrong estimation (local) 53426286 53426861 159680 160255 NC_000014.9 scf7180000172747 99.65 True fake: scaffold gap size wrong estimation (local) 53429619 53430144 162426 162951 NC_000014.9 scf7180000172747 100.0 True fake: scaffold gap size wrong estimation (local) 53430414 53448156 163312 181067 NC_000014.9 scf7180000172747 99.79 True fake: scaffold gap size wrong estimation (local) 53448241 53466202 181250 199128 NC_000014.9 scf7180000172747 99.46 True fake: scaffold gap size wrong estimation (local) 53466417 53476783 199295 209895 NC_000014.9 scf7180000172747 97.88 True fake: scaffold gap size wrong estimation (local) 53477513 53511263 210579 244821 NC_000014.9 scf7180000172747 98.3 True fake: scaffold gap size wrong estimation (local) 53511425 53540713 244916 274187 NC_000014.9 scf7180000172747 99.88 True fake: scaffold gap size wrong estimation (local) 53540895 53549543 274337 282985 NC_000014.9 scf7180000172747 99.93 True fake: scaffold gap size wrong estimation (local) 53549769 53558092 283160 291478 NC_000014.9 scf7180000172747 99.75 True fake: scaffold gap size wrong estimation (local) 53558859 53568865 292153 302158 NC_000014.9 scf7180000172747 99.81 True fake: scaffold gap size wrong estimation (local) 53569093 53573436 302323 306686 NC_000014.9 scf7180000172747 99.77 True fake: scaffold gap size wrong estimation (local) 53573642 53578399 306808 311573 NC_000014.9 scf7180000172747 99.89 True fake: scaffold gap size wrong estimation (local) 53578573 53582340 311673 315440 NC_000014.9 scf7180000172747 99.89 True fake: scaffold gap size wrong estimation (local) 53582608 53610500 315512 343745 NC_000014.9 scf7180000172747 98.48 True fake: scaffold gap size wrong estimation (local) 53610650 53612471 343834 345655 NC_000014.9 scf7180000172747 99.95 True indel: stretch of mismatches 53612598 53616440 345782 349615 NC_000014.9 scf7180000172747 98.96 True indel: indel (> 5bp) 53616608 53653996 349801 388063 NC_000014.9 scf7180000172747 97.84 True fake: scaffold gap size wrong estimation (local) 53654209 53676665 388267 410742 NC_000014.9 scf7180000172747 99.82 True fake: scaffold gap size wrong estimation (local) 53676888 53680321 410878 414311 NC_000014.9 scf7180000172747 99.94 True fake: scaffold gap size wrong estimation (local) 53680943 53701948 414919 435895 NC_000014.9 scf7180000172747 99.59 True fake: scaffold gap size wrong estimation (local) 53702288 53705157 436214 439083 NC_000014.9 scf7180000172747 99.9 True fake: scaffold gap size wrong estimation (local) 53705480 53707636 439318 441474 NC_000014.9 scf7180000172747 99.81 True fake: scaffold gap size wrong estimation (local) 53708191 53723014 441975 456741 NC_000014.9 scf7180000172747 99.13 True fake: scaffold gap size wrong estimation (local) 53723160 53728499 456859 462113 NC_000014.9 scf7180000172747 98.19 True fake: scaffold gap size wrong estimation (local) 53728726 53730838 462310 464423 NC_000014.9 scf7180000172747 99.86 True fake: scaffold gap size wrong estimation (local) 53730977 53746714 464525 480244 NC_000014.9 scf7180000172747 99.69 True fake: scaffold gap size wrong estimation (local) 53746861 53747816 480354 481309 NC_000014.9 scf7180000172747 99.58 True fake: scaffold gap size wrong estimation (local) 53748034 53756456 481828 490250 NC_000014.9 scf7180000172747 99.73 True fake: scaffold gap size wrong estimation (local) 53756674 53786484 490423 521003 NC_000014.9 scf7180000172747 97.14 True fake: scaffold gap size wrong estimation (local) 53786764 53800119 521264 534619 NC_000014.9 scf7180000172747 99.88 True fake: scaffold gap size wrong estimation (local) 53801063 53802680 535397 537014 NC_000014.9 scf7180000172747 97.35 True fake: scaffold gap size wrong estimation (local) 53804204 53816050 538427 550272 NC_000014.9 scf7180000172747 99.94 True fake: scaffold gap size wrong estimation (local) 53816433 53817977 550613 552121 NC_000014.9 scf7180000172747 96.86 True indel: indel (<= 5bp) 53818042 53837511 552184 571574 NC_000014.9 scf7180000172747 99.17 True fake: scaffold gap size wrong estimation (local) 53838182 53847460 572164 581443 NC_000014.9 scf7180000172747 99.66 True fake: scaffold gap size wrong estimation (local) 53847678 53877040 581587 610963 NC_000014.9 scf7180000172747 99.56 True fake: scaffold gap size wrong estimation (local) 53878558 53887333 612147 621072 NC_000014.9 scf7180000172747 99.25 True fake: scaffold gap size wrong estimation (local) 53888248 53898338 622051 632006 NC_000014.9 scf7180000172747 98.39 True fake: scaffold gap size wrong estimation (local) 53898555 53899816 632112 633373 NC_000014.9 scf7180000172747 99.6 True fake: scaffold gap size wrong estimation (local) 53900242 53909122 633741 642640 NC_000014.9 scf7180000172747 99.84 True fake: scaffold gap size wrong estimation (local) 53911363 53915878 644582 649309 NC_000014.9 scf7180000172747 95.34 True fake: scaffold gap size wrong estimation (local) 53916323 53918324 650112 652113 NC_000014.9 scf7180000172747 100.0 True relocation, inconsistency = 17224830 71143155 71144387 652114 653346 NC_000014.9 scf7180000172747 100.0 True fake: scaffold gap size wrong estimation (local) 71144473 71156085 653502 665044 NC_000014.9 scf7180000172747 98.91 True fake: scaffold gap size wrong estimation (local) 71156307 71157778 665337 666802 NC_000014.9 scf7180000172747 99.12 True fake: scaffold gap size wrong estimation (local) 71158886 71160400 667872 669386 NC_000014.9 scf7180000172747 99.47 True fake: scaffold gap size wrong estimation (local) 71160440 71160947 669427 669934 NC_000014.9 scf7180000172747 99.8 True CONTIG scf7180000172747 672111 misassembled 106366355 106367081 1 727 NC_000014.9 scf7180000172748 99.59 True fake: scaffold gap size wrong estimation (local) 106369482 106370526 2756 3800 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 106371774 106373743 4924 6893 NC_000014.9 scf7180000172748 99.04 True indel: indel (<= 5bp) 106373943 106376199 7096 9320 NC_000014.9 scf7180000172748 98.17 True indel: stretch of mismatches 106376217 106381189 9338 14320 NC_000014.9 scf7180000172748 99.14 True fake: scaffold gap size wrong estimation (local) 106380963 106382647 14874 16583 NC_000014.9 scf7180000172748 99.47 True fake: scaffold gap size wrong estimation (local) 106383144 106387469 17402 21726 NC_000014.9 scf7180000172748 99.88 True fake: scaffold gap size wrong estimation (local) 106388981 106396937 23235 31207 NC_000014.9 scf7180000172748 97.08 True relocation, inconsistency = 81279 106478217 106498290 31208 51462 NC_000014.9 scf7180000172748 98.65 True fake: scaffold gap size wrong estimation (local) 106498993 106516420 52015 69439 NC_000014.9 scf7180000172748 99.51 True fake: scaffold gap size wrong estimation (local) 106516535 106521392 69547 74395 NC_000014.9 scf7180000172748 98.89 True relocation, scaffold gap is present, inconsistency = -475308 106057703 106059250 86014 87561 NC_000014.9 scf7180000172748 99.35 True fake: scaffold gap size wrong estimation (local) 106059692 106060556 88048 88912 NC_000014.9 scf7180000172748 99.65 True fake: scaffold gap size wrong estimation (local) 106060557 106061306 89103 89852 NC_000014.9 scf7180000172748 99.73 True relocation, scaffold gap is present, inconsistency = 474714 106536041 106537922 89873 91755 NC_000014.9 scf7180000172748 99.05 True fake: scaffold gap size wrong estimation (local) 106538036 106540649 91846 94452 NC_000014.9 scf7180000172748 98.62 True relocation, scaffold gap is present, inconsistency = -300212 106244676 106245282 98691 99297 NC_000014.9 scf7180000172748 98.85 True fake: scaffold gap size wrong estimation (local) 106247999 106249117 101891 103009 NC_000014.9 scf7180000172748 99.91 True fake: not a misassembly (possible transposable element) 106548458 106549443 103010 103996 NC_000014.9 scf7180000172748 98.04 True fake: not a misassembly (possible transposable element) 106250092 106250898 104017 104824 NC_000014.9 scf7180000172748 98.4 True relocation, inconsistency = 299036 106549935 106561897 104825 116755 NC_000014.9 scf7180000172748 98.8 True fake: scaffold gap size wrong estimation (local) 106562183 106563819 116981 118616 NC_000014.9 scf7180000172748 99.02 True fake: scaffold gap size wrong estimation (local) 106564048 106589000 118791 143859 NC_000014.9 scf7180000172748 98.9 True fake: scaffold gap size wrong estimation (local) 106589254 106599963 144145 154953 NC_000014.9 scf7180000172748 98.62 True fake: scaffold gap size wrong estimation (local) 106600664 106601592 155782 156710 NC_000014.9 scf7180000172748 99.35 True indel: indel (> 5bp) 106601662 106603114 156772 158224 NC_000014.9 scf7180000172748 99.66 True fake: scaffold gap size wrong estimation (local) 106603577 106604157 158695 159275 NC_000014.9 scf7180000172748 96.39 True indel: indel (<= 5bp) 106604159 106605506 159276 160623 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 106606351 106608510 161443 163602 NC_000014.9 scf7180000172748 99.58 True fake: scaffold gap size wrong estimation (local) 106610372 106611285 165346 166259 NC_000014.9 scf7180000172748 99.89 True fake: scaffold gap size wrong estimation (local) 106612920 106613761 167678 168519 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 106616031 106616615 170142 170726 NC_000014.9 scf7180000172748 100.0 True relocation, scaffold gap is present, inconsistency = -448857 106171331 106172834 174299 175802 NC_000014.9 scf7180000172748 99.14 True fake: scaffold gap size wrong estimation (local) 106172987 106176042 175945 179000 NC_000014.9 scf7180000172748 99.44 True fake: not a misassembly (possible transposable element) 106532652 106533188 179364 179900 NC_000014.9 scf7180000172748 98.7 True fake: not a misassembly (possible transposable element) 106177177 106177963 180790 181576 NC_000014.9 scf7180000172748 97.2 True local misassembly 106178432 106178981 181587 182136 NC_000014.9 scf7180000172748 99.45 True fake: scaffold gap size wrong estimation (local) 106180171 106181233 183182 184244 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 106181234 106181735 184278 184779 NC_000014.9 scf7180000172748 99.2 True fake: scaffold gap size wrong estimation (local) 106182550 106184602 185576 187727 NC_000014.9 scf7180000172748 95.97 True fake: scaffold gap size wrong estimation (local) 106185862 106186694 188949 189784 NC_000014.9 scf7180000172748 98.68 True fake: scaffold gap size wrong estimation (local) 106189095 106189932 192109 192946 NC_000014.9 scf7180000172748 99.88 True fake: scaffold gap size wrong estimation (local) 106191610 106192213 194826 195429 NC_000014.9 scf7180000172748 99.83 True relocation, scaffold gap is present, inconsistency = 237318 106431938 106432776 197836 198674 NC_000014.9 scf7180000172748 99.28 True fake: scaffold gap size wrong estimation (local) 106434520 106435465 200219 201165 NC_000014.9 scf7180000172748 99.35 True inversion 106432628 106434642 203182 201166 NC_000014.9 scf7180000172748 98.36 True fake: scaffold gap size wrong estimation (local) 106430185 106431571 205505 204119 NC_000014.9 scf7180000172748 99.5 True relocation, scaffold gap is present, inconsistency = 28199808 78226207 78228169 207713 209676 NC_000014.9 scf7180000172748 99.85 True fake: scaffold gap size wrong estimation (local) 78228335 78241391 210154 223278 NC_000014.9 scf7180000172748 99.82 True fake: scaffold gap size wrong estimation (local) 78241536 78244186 223385 226035 NC_000014.9 scf7180000172748 99.96 True fake: scaffold gap size wrong estimation (local) 78244314 78254455 226126 236301 NC_000014.9 scf7180000172748 99.85 True fake: scaffold gap size wrong estimation (local) 78254667 78258877 236460 240681 NC_000014.9 scf7180000172748 99.95 True fake: scaffold gap size wrong estimation (local) 78259132 78266326 240895 248083 NC_000014.9 scf7180000172748 99.81 True fake: scaffold gap size wrong estimation (local) 78266516 78314908 248178 296528 NC_000014.9 scf7180000172748 99.81 True fake: scaffold gap size wrong estimation (local) 78315078 78332333 296658 313918 NC_000014.9 scf7180000172748 99.94 True fake: scaffold gap size wrong estimation (local) 78332567 78372322 314110 353472 NC_000014.9 scf7180000172748 98.63 True fake: not a misassembly (possible transposable element) 75360105 75361109 353493 354497 NC_000014.9 scf7180000172748 100.0 True fake: not a misassembly (possible transposable element) 78372526 78374529 354498 356502 NC_000014.9 scf7180000172748 99.65 True relocation, scaffold gap is present, inconsistency = -3012038 75362522 75366508 356533 360531 NC_000014.9 scf7180000172748 99.57 True fake: not a misassembly (possible transposable element) 100704204 100705328 361656 360532 NC_000014.9 scf7180000172748 100.0 True fake: not a misassembly (possible transposable element) 75366351 75378226 361677 374098 NC_000014.9 scf7180000172748 95.62 True fake: not a misassembly (possible transposable element) 75378227 75378914 374786 374099 NC_000014.9 scf7180000172748 100.0 True fake: not a misassembly (possible transposable element) 75378915 75382164 374787 378035 NC_000014.9 scf7180000172748 99.88 True fake: scaffold gap size wrong estimation (local) 75383341 75385341 379126 381126 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 75385581 75386482 381331 382232 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 75386568 75401163 382320 397283 NC_000014.9 scf7180000172748 96.28 True fake: scaffold gap size wrong estimation (local) 75401299 75407767 397518 403997 NC_000014.9 scf7180000172748 99.8 True fake: scaffold gap size wrong estimation (local) 75408020 75408648 404229 404857 NC_000014.9 scf7180000172748 99.52 True fake: scaffold gap size wrong estimation (local) 75408821 75414809 404995 411187 NC_000014.9 scf7180000172748 95.99 True fake: scaffold gap size wrong estimation (local) 75415011 75428146 411293 424477 NC_000014.9 scf7180000172748 99.79 True fake: scaffold gap size wrong estimation (local) 75428300 75432951 424587 429238 NC_000014.9 scf7180000172748 99.96 True fake: scaffold gap size wrong estimation (local) 75433213 75447770 429474 444057 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 75447928 75474858 444140 471056 NC_000014.9 scf7180000172748 99.43 True fake: scaffold gap size wrong estimation (local) 75475123 75475889 471310 472076 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 75476002 75479568 472261 475785 NC_000014.9 scf7180000172748 98.81 True fake: scaffold gap size wrong estimation (local) 75479734 75485970 475915 482139 NC_000014.9 scf7180000172748 99.69 True fake: scaffold gap size wrong estimation (local) 75486486 75487841 482627 483982 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 75488398 75489168 484143 484901 NC_000014.9 scf7180000172748 98.44 True fake: scaffold gap size wrong estimation (local) 75489393 75494413 485124 490159 NC_000014.9 scf7180000172748 99.78 True fake: scaffold gap size wrong estimation (local) 75494599 75498152 490323 493876 NC_000014.9 scf7180000172748 99.94 True fake: not a misassembly (possible transposable element) 34690113 34690809 494579 493883 NC_000014.9 scf7180000172748 99.86 True fake: not a misassembly (possible transposable element) 75498799 75500298 495016 496515 NC_000014.9 scf7180000172748 98.6 True fake: scaffold gap size wrong estimation (local) 75500457 75502636 496614 498785 NC_000014.9 scf7180000172748 99.59 True fake: scaffold gap size wrong estimation (local) 75502894 75512687 499055 508756 NC_000014.9 scf7180000172748 98.74 True fake: scaffold gap size wrong estimation (local) 75513026 75525449 509086 521521 NC_000014.9 scf7180000172748 99.44 True fake: scaffold gap size wrong estimation (local) 75525676 75529860 521721 525905 NC_000014.9 scf7180000172748 99.9 True fake: scaffold gap size wrong estimation (local) 75530070 75539433 526068 535598 NC_000014.9 scf7180000172748 98.07 True fake: scaffold gap size wrong estimation (local) 75541057 75541935 537190 538068 NC_000014.9 scf7180000172748 99.77 True fake: scaffold gap size wrong estimation (local) 75541936 75544310 538924 541298 NC_000014.9 scf7180000172748 99.87 True fake: scaffold gap size wrong estimation (local) 75545468 75549991 542373 547019 NC_000014.9 scf7180000172748 98.52 True fake: scaffold gap size wrong estimation (local) 75550070 75567273 547075 564082 NC_000014.9 scf7180000172748 98.09 True fake: scaffold gap size wrong estimation (local) 75567303 75575977 564168 572658 NC_000014.9 scf7180000172748 97.79 True fake: scaffold gap size wrong estimation (local) 75576082 75581795 572884 578611 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 75582318 75585899 579203 582785 NC_000014.9 scf7180000172748 99.33 True fake: not a misassembly (possible transposable element) 92049585 92050744 582786 583947 NC_000014.9 scf7180000172748 96.63 True fake: not a misassembly (possible transposable element) 75586169 75592733 583968 590550 NC_000014.9 scf7180000172748 99.94 True fake: scaffold gap size wrong estimation (local) 75592905 75597046 590688 594902 NC_000014.9 scf7180000172748 99.61 True fake: scaffold gap size wrong estimation (local) 75597293 75613583 594974 611284 NC_000014.9 scf7180000172748 99.42 True fake: scaffold gap size wrong estimation (local) 75613802 75615796 611500 613494 NC_000014.9 scf7180000172748 99.9 True fake: scaffold gap size wrong estimation (local) 75616316 75618900 613971 616555 NC_000014.9 scf7180000172748 99.92 True fake: scaffold gap size wrong estimation (local) 75621226 75623023 618867 620664 NC_000014.9 scf7180000172748 99.83 True fake: scaffold gap size wrong estimation (local) 75623226 75626135 620859 623769 NC_000014.9 scf7180000172748 99.79 True fake: scaffold gap size wrong estimation (local) 75626266 75637469 623904 635165 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 75638370 75638986 635850 636466 NC_000014.9 scf7180000172748 98.54 True fake: scaffold gap size wrong estimation (local) 75638987 75640077 636927 638017 NC_000014.9 scf7180000172748 99.63 True fake: scaffold gap size wrong estimation (local) 75640408 75644019 638204 641815 NC_000014.9 scf7180000172748 99.97 True indel: indel (<= 5bp) 75644153 75645033 641952 642832 NC_000014.9 scf7180000172748 99.89 True indel: indel (> 5bp) 75645042 75645672 642833 643463 NC_000014.9 scf7180000172748 99.84 True fake: scaffold gap size wrong estimation (local) 75645824 75648966 643578 646739 NC_000014.9 scf7180000172748 99.97 True fake: scaffold gap size wrong estimation (local) 75649156 75652829 646861 650534 NC_000014.9 scf7180000172748 99.97 True fake: scaffold gap size wrong estimation (local) 75653014 75662359 650733 660096 NC_000014.9 scf7180000172748 99.43 True fake: scaffold gap size wrong estimation (local) 75662609 75664021 660386 661798 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 75664086 75665601 661887 663402 NC_000014.9 scf7180000172748 99.93 True fake: scaffold gap size wrong estimation (local) 75665770 75667756 663594 665580 NC_000014.9 scf7180000172748 100.0 True fake: scaffold gap size wrong estimation (local) 75667981 75672296 665828 670143 NC_000014.9 scf7180000172748 99.91 True fake: scaffold gap size wrong estimation (local) 75672514 75676276 670327 674089 NC_000014.9 scf7180000172748 99.89 True relocation, scaffold gap is present, inconsistency = 30581511 106258236 106262929 674538 679482 NC_000014.9 scf7180000172748 95.21 True fake: scaffold gap size wrong estimation (local) 106263192 106270872 679701 687380 NC_000014.9 scf7180000172748 99.58 True fake: scaffold gap size wrong estimation (local) 106271271 106280431 687739 696899 NC_000014.9 scf7180000172748 99.69 True fake: scaffold gap size wrong estimation (local) 106280681 106285928 697001 702248 NC_000014.9 scf7180000172748 99.66 True fake: scaffold gap size wrong estimation (local) 106286088 106287217 702384 703513 NC_000014.9 scf7180000172748 99.82 True fake: scaffold gap size wrong estimation (local) 106288362 106289882 704776 706296 NC_000014.9 scf7180000172748 99.74 True fake: scaffold gap size wrong estimation (local) 106298959 106300338 714863 716242 NC_000014.9 scf7180000172748 100.0 True local misassembly 106300677 106305572 716243 721138 NC_000014.9 scf7180000172748 99.63 True fake: scaffold gap size wrong estimation (local) 106306182 106307529 722218 723565 NC_000014.9 scf7180000172748 99.85 True local misassembly 106307731 106308322 723566 724157 NC_000014.9 scf7180000172748 95.78 True fake: scaffold gap size wrong estimation (local) 106309354 106318587 725277 734507 NC_000014.9 scf7180000172748 99.77 True CONTIG scf7180000172748 734507 misassembled 90412972 90413757 528 1313 NC_000014.9 scf7180000172749 99.75 True fake: scaffold gap size wrong estimation (local) 90414900 90415789 2706 3595 NC_000014.9 scf7180000172749 100.0 True local misassembly 90415976 90417473 3596 5093 NC_000014.9 scf7180000172749 98.46 True fake: scaffold gap size wrong estimation (local) 90417675 90420239 5350 7914 NC_000014.9 scf7180000172749 99.96 True fake: scaffold gap size wrong estimation (local) 90420703 90422766 8336 10418 NC_000014.9 scf7180000172749 99.9 True fake: scaffold gap size wrong estimation (local) 90422962 90428965 10588 16591 NC_000014.9 scf7180000172749 99.98 True fake: scaffold gap size wrong estimation (local) 90429070 90431532 16699 19189 NC_000014.9 scf7180000172749 99.68 True fake: scaffold gap size wrong estimation (local) 90431734 90433933 19416 21717 NC_000014.9 scf7180000172749 96.19 True fake: scaffold gap size wrong estimation (local) 90434161 90436255 21982 24071 NC_000014.9 scf7180000172749 99.76 True fake: scaffold gap size wrong estimation (local) 90436753 90444732 24626 32471 NC_000014.9 scf7180000172749 96.96 True fake: scaffold gap size wrong estimation (local) 90444843 90447331 32532 35020 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 90447332 90448811 35418 36897 NC_000014.9 scf7180000172749 99.39 True fake: scaffold gap size wrong estimation (local) 90448812 90449795 37679 38662 NC_000014.9 scf7180000172749 99.39 True fake: scaffold gap size wrong estimation (local) 90449909 90460592 38752 49473 NC_000014.9 scf7180000172749 99.76 True fake: scaffold gap size wrong estimation (local) 90460611 90461931 49524 50814 NC_000014.9 scf7180000172749 97.39 True fake: scaffold gap size wrong estimation (local) 90462550 90469668 51473 58545 NC_000014.9 scf7180000172749 99.05 True fake: scaffold gap size wrong estimation (local) 90470630 90475709 59504 64574 NC_000014.9 scf7180000172749 99.13 True fake: scaffold gap size wrong estimation (local) 90476909 90478740 65971 67802 NC_000014.9 scf7180000172749 100.0 True relocation, scaffold gap is present, inconsistency = 9421680 99900441 99901625 69007 67823 NC_000014.9 scf7180000172749 98.31 True local misassembly 99898752 99900194 70450 69008 NC_000014.9 scf7180000172749 100.0 True local misassembly 99902398 99903120 71223 70501 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99883539 99898589 86473 71423 NC_000014.9 scf7180000172749 99.91 True fake: scaffold gap size wrong estimation (local) 99881877 99883368 88443 86974 NC_000014.9 scf7180000172749 98.26 True fake: scaffold gap size wrong estimation (local) 99871501 99881652 99115 88964 NC_000014.9 scf7180000172749 99.93 True fake: scaffold gap size wrong estimation (local) 99861711 99870993 108960 99639 NC_000014.9 scf7180000172749 98.14 True fake: scaffold gap size wrong estimation (local) 99858452 99861570 112178 109060 NC_000014.9 scf7180000172749 99.97 True fake: scaffold gap size wrong estimation (local) 99851584 99858212 119041 112410 NC_000014.9 scf7180000172749 99.91 True fake: scaffold gap size wrong estimation (local) 99846515 99851342 124165 119286 NC_000014.9 scf7180000172749 99.34 True fake: scaffold gap size wrong estimation (local) 99844480 99845909 126208 124779 NC_000014.9 scf7180000172749 99.79 True indel: indel (<= 5bp) 99838907 99844476 131778 126209 NC_000014.9 scf7180000172749 99.61 True indel: indel (<= 5bp) 99835066 99838906 135621 131781 NC_000014.9 scf7180000172749 99.95 True local misassembly 99834315 99834927 136244 135632 NC_000014.9 scf7180000172749 97.06 True fake: scaffold gap size wrong estimation (local) 99830790 99834314 140800 137276 NC_000014.9 scf7180000172749 99.97 True fake: scaffold gap size wrong estimation (local) 99815357 99830610 156181 141019 NC_000014.9 scf7180000172749 98.53 True fake: scaffold gap size wrong estimation (local) 99806541 99815146 165039 156306 NC_000014.9 scf7180000172749 98.86 True fake: scaffold gap size wrong estimation (local) 99801586 99806338 169954 165202 NC_000014.9 scf7180000172749 99.96 True fake: scaffold gap size wrong estimation (local) 99793352 99801382 178060 170098 NC_000014.9 scf7180000172749 99.08 True fake: scaffold gap size wrong estimation (local) 99791079 99793135 180288 178232 NC_000014.9 scf7180000172749 100.0 True local misassembly 99789440 99790358 181207 180289 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99785307 99789388 185874 181807 NC_000014.9 scf7180000172749 99.43 True fake: scaffold gap size wrong estimation (local) 99784219 99785151 186939 186007 NC_000014.9 scf7180000172749 99.89 True fake: scaffold gap size wrong estimation (local) 99783715 99784218 187552 187049 NC_000014.9 scf7180000172749 99.6 True fake: scaffold gap size wrong estimation (local) 99771047 99783176 199987 187908 NC_000014.9 scf7180000172749 99.48 True fake: scaffold gap size wrong estimation (local) 99768984 99770793 202070 200261 NC_000014.9 scf7180000172749 99.89 True fake: scaffold gap size wrong estimation (local) 99766401 99768789 204629 202241 NC_000014.9 scf7180000172749 99.67 True fake: scaffold gap size wrong estimation (local) 99761927 99766206 209086 204798 NC_000014.9 scf7180000172749 99.63 True fake: scaffold gap size wrong estimation (local) 99721070 99761669 250520 209293 NC_000014.9 scf7180000172749 98.09 True fake: scaffold gap size wrong estimation (local) 99720033 99720621 251477 250883 NC_000014.9 scf7180000172749 99.48 True fake: scaffold gap size wrong estimation (local) 99713642 99719773 258086 252027 NC_000014.9 scf7180000172749 98.67 True fake: scaffold gap size wrong estimation (local) 99694596 99713253 276862 258428 NC_000014.9 scf7180000172749 97.95 True fake: scaffold gap size wrong estimation (local) 99692806 99694381 278573 276997 NC_000014.9 scf7180000172749 99.87 True fake: scaffold gap size wrong estimation (local) 99682413 99692374 288958 278980 NC_000014.9 scf7180000172749 99.58 True fake: scaffold gap size wrong estimation (local) 99670310 99682122 301061 289252 NC_000014.9 scf7180000172749 99.29 True fake: scaffold gap size wrong estimation (local) 99666049 99670133 305267 301182 NC_000014.9 scf7180000172749 99.9 True fake: scaffold gap size wrong estimation (local) 99656896 99665854 314453 305412 NC_000014.9 scf7180000172749 99.11 True fake: scaffold gap size wrong estimation (local) 99654212 99656740 317144 314572 NC_000014.9 scf7180000172749 99.64 True fake: scaffold gap size wrong estimation (local) 99653464 99653993 317960 317431 NC_000014.9 scf7180000172749 99.62 True fake: scaffold gap size wrong estimation (local) 99646587 99653362 324984 318249 NC_000014.9 scf7180000172749 98.85 True fake: scaffold gap size wrong estimation (local) 99643283 99646526 328524 325281 NC_000014.9 scf7180000172749 99.82 True fake: scaffold gap size wrong estimation (local) 99642162 99643077 329534 328619 NC_000014.9 scf7180000172749 99.89 True fake: scaffold gap size wrong estimation (local) 99641098 99641685 330572 329985 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99639850 99640881 331685 330654 NC_000014.9 scf7180000172749 97.87 True fake: scaffold gap size wrong estimation (local) 99637444 99639605 334187 332026 NC_000014.9 scf7180000172749 99.81 True fake: scaffold gap size wrong estimation (local) 99631346 99636972 340218 334593 NC_000014.9 scf7180000172749 99.77 True fake: scaffold gap size wrong estimation (local) 99629720 99631097 341795 340418 NC_000014.9 scf7180000172749 99.85 True fake: scaffold gap size wrong estimation (local) 99628610 99629521 342883 341972 NC_000014.9 scf7180000172749 99.89 True fake: scaffold gap size wrong estimation (local) 99621986 99628425 349434 343004 NC_000014.9 scf7180000172749 99.8 True fake: scaffold gap size wrong estimation (local) 99611608 99621700 359776 349667 NC_000014.9 scf7180000172749 99.53 True fake: scaffold gap size wrong estimation (local) 99610761 99611319 360675 360117 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99604272 99610669 367185 360742 NC_000014.9 scf7180000172749 99.54 True fake: scaffold gap size wrong estimation (local) 99591950 99604043 379891 367363 NC_000014.9 scf7180000172749 96.62 True fake: scaffold gap size wrong estimation (local) 99583807 99591750 387938 379995 NC_000014.9 scf7180000172749 99.87 True fake: scaffold gap size wrong estimation (local) 99567767 99583504 403801 388202 NC_000014.9 scf7180000172749 98.59 True indel: indel (<= 5bp) 99557784 99567619 413802 403950 NC_000014.9 scf7180000172749 98.32 True fake: scaffold gap size wrong estimation (local) 99539471 99557688 432071 413890 NC_000014.9 scf7180000172749 99.13 True fake: scaffold gap size wrong estimation (local) 99534259 99539247 437255 432267 NC_000014.9 scf7180000172749 99.92 True fake: scaffold gap size wrong estimation (local) 99532993 99534154 438571 437410 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99529614 99532785 441871 438690 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99519334 99529526 452086 441947 NC_000014.9 scf7180000172749 99.04 True fake: scaffold gap size wrong estimation (local) 99504716 99519114 466678 452261 NC_000014.9 scf7180000172749 99.87 True fake: scaffold gap size wrong estimation (local) 99496943 99504467 474382 466869 NC_000014.9 scf7180000172749 99.8 True fake: scaffold gap size wrong estimation (local) 99489405 99496453 481645 474842 NC_000014.9 scf7180000172749 96.44 True fake: scaffold gap size wrong estimation (local) 99474824 99490713 498034 482128 NC_000014.9 scf7180000172749 99.83 True fake: scaffold gap size wrong estimation (local) 99452310 99474068 520683 498827 NC_000014.9 scf7180000172749 99.05 True fake: scaffold gap size wrong estimation (local) 99447163 99452157 525791 520797 NC_000014.9 scf7180000172749 99.92 True indel: indel (<= 5bp) 99443522 99446988 529430 525964 NC_000014.9 scf7180000172749 99.94 True fake: scaffold gap size wrong estimation (local) 99419787 99443268 553064 529702 NC_000014.9 scf7180000172749 99.31 True fake: scaffold gap size wrong estimation (local) 99399946 99419519 572832 553261 NC_000014.9 scf7180000172749 99.95 True fake: scaffold gap size wrong estimation (local) 99379767 99399752 592843 572970 NC_000014.9 scf7180000172749 99.39 True fake: scaffold gap size wrong estimation (local) 99378531 99379233 594080 593378 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99377870 99378383 594667 594154 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99376731 99377715 595739 594755 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99368648 99376437 604064 596041 NC_000014.9 scf7180000172749 98.79 True fake: scaffold gap size wrong estimation (local) 99360565 99368422 612126 604341 NC_000014.9 scf7180000172749 98.94 True fake: scaffold gap size wrong estimation (local) 99359729 99360446 612979 612262 NC_000014.9 scf7180000172749 97.21 True fake: scaffold gap size wrong estimation (local) 99358551 99359224 614316 613625 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99352672 99358447 620170 614373 NC_000014.9 scf7180000172749 99.51 True fake: scaffold gap size wrong estimation (local) 99348423 99352422 624240 620346 NC_000014.9 scf7180000172749 97.15 True fake: scaffold gap size wrong estimation (local) 99345340 99348205 627387 624522 NC_000014.9 scf7180000172749 99.86 True fake: scaffold gap size wrong estimation (local) 99343780 99344899 628871 627752 NC_000014.9 scf7180000172749 99.73 True indel: indel (> 5bp) 99342411 99343755 630216 628872 NC_000014.9 scf7180000172749 99.63 True fake: scaffold gap size wrong estimation (local) 99338456 99342410 634907 630953 NC_000014.9 scf7180000172749 99.92 True fake: scaffold gap size wrong estimation (local) 99336912 99338051 636904 635764 NC_000014.9 scf7180000172749 99.65 True fake: scaffold gap size wrong estimation (local) 99333133 99335492 640373 638100 NC_000014.9 scf7180000172749 96.23 True fake: scaffold gap size wrong estimation (local) 99329650 99331606 643766 641810 NC_000014.9 scf7180000172749 99.54 True fake: scaffold gap size wrong estimation (local) 99328609 99329439 644844 644014 NC_000014.9 scf7180000172749 99.4 True fake: scaffold gap size wrong estimation (local) 99319699 99328432 653690 644957 NC_000014.9 scf7180000172749 99.76 True fake: scaffold gap size wrong estimation (local) 99315787 99319586 657565 653777 NC_000014.9 scf7180000172749 99.53 True fake: scaffold gap size wrong estimation (local) 99313250 99315573 660042 657719 NC_000014.9 scf7180000172749 99.91 True fake: scaffold gap size wrong estimation (local) 99310969 99313069 662272 660172 NC_000014.9 scf7180000172749 99.95 True fake: scaffold gap size wrong estimation (local) 99309985 99310968 663296 662313 NC_000014.9 scf7180000172749 99.9 True fake: scaffold gap size wrong estimation (local) 99307828 99309984 665845 663689 NC_000014.9 scf7180000172749 99.07 True indel: indel (> 5bp) 99307139 99307827 666554 665866 NC_000014.9 scf7180000172749 97.97 True indel: indel (> 5bp) 99306111 99307138 667588 666561 NC_000014.9 scf7180000172749 99.9 True local misassembly 99305404 99305921 668106 667589 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99302010 99304663 671569 668916 NC_000014.9 scf7180000172749 99.74 True fake: scaffold gap size wrong estimation (local) 99299246 99301735 674246 671757 NC_000014.9 scf7180000172749 99.8 True fake: scaffold gap size wrong estimation (local) 99298085 99299020 675368 674433 NC_000014.9 scf7180000172749 100.0 True fake: scaffold gap size wrong estimation (local) 99292737 99297866 680674 675611 NC_000014.9 scf7180000172749 98.42 True fake: scaffold gap size wrong estimation (local) 99288843 99292640 684812 681016 NC_000014.9 scf7180000172749 99.97 True CONTIG scf7180000172749 684812 misassembled 44743419 44743929 89 599 NC_000014.9 scf7180000172750 99.8 True fake: scaffold gap size wrong estimation (local) 44745678 44752231 2380 8933 NC_000014.9 scf7180000172750 99.98 True fake: scaffold gap size wrong estimation (local) 44752491 44773286 9157 29908 NC_000014.9 scf7180000172750 99.56 True fake: scaffold gap size wrong estimation (local) 44773505 44799421 30082 55840 NC_000014.9 scf7180000172750 99.33 True fake: scaffold gap size wrong estimation (local) 44799552 44804091 56014 60551 NC_000014.9 scf7180000172750 99.93 True fake: scaffold gap size wrong estimation (local) 44804227 44824228 60858 81268 NC_000014.9 scf7180000172750 95.18 True fake: scaffold gap size wrong estimation (local) 44824864 44825991 81796 82923 NC_000014.9 scf7180000172750 98.05 True fake: scaffold gap size wrong estimation (local) 44826261 44838996 83054 95874 NC_000014.9 scf7180000172750 99.91 True fake: scaffold gap size wrong estimation (local) 44839121 44840610 96032 97521 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 44840802 44841873 97687 98758 NC_000014.9 scf7180000172750 99.91 True fake: scaffold gap size wrong estimation (local) 44842040 44854496 98884 111668 NC_000014.9 scf7180000172750 96.67 True fake: scaffold gap size wrong estimation (local) 44859298 44869798 116406 126906 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44871070 44871814 128369 129113 NC_000014.9 scf7180000172750 99.6 True fake: scaffold gap size wrong estimation (local) 44872239 44875080 129563 132412 NC_000014.9 scf7180000172750 99.75 True fake: scaffold gap size wrong estimation (local) 44875243 44878509 132507 135773 NC_000014.9 scf7180000172750 99.91 True fake: scaffold gap size wrong estimation (local) 44878765 44880359 135990 137591 NC_000014.9 scf7180000172750 99.81 True fake: scaffold gap size wrong estimation (local) 44880589 44881612 137861 138884 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44881970 44888156 139246 145582 NC_000014.9 scf7180000172750 98.3 True fake: scaffold gap size wrong estimation (local) 44888380 44891247 146038 148905 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44891855 44894225 149495 151865 NC_000014.9 scf7180000172750 99.96 True fake: scaffold gap size wrong estimation (local) 44894876 44899836 152419 157370 NC_000014.9 scf7180000172750 99.63 True fake: not a misassembly (possible transposable element) 49899398 49900429 157392 158423 NC_000014.9 scf7180000172750 100.0 True fake: not a misassembly (possible transposable element) 44899959 44909722 158424 167890 NC_000014.9 scf7180000172750 96.23 True fake: scaffold gap size wrong estimation (local) 44910594 44912412 169197 171015 NC_000014.9 scf7180000172750 99.84 True fake: scaffold gap size wrong estimation (local) 44912923 44914016 171674 172767 NC_000014.9 scf7180000172750 100.0 True indel: indel (<= 5bp) 44914020 44916230 172768 174978 NC_000014.9 scf7180000172750 99.1 True local misassembly 44916870 44918070 174979 176179 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44918202 44919198 176512 177508 NC_000014.9 scf7180000172750 99.9 True fake: scaffold gap size wrong estimation (local) 44919490 44937169 177646 195248 NC_000014.9 scf7180000172750 99.17 True fake: scaffold gap size wrong estimation (local) 44937321 44938407 195338 196424 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44938593 44941450 196723 199580 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44941651 44943431 199764 201544 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44943434 44966024 201578 224124 NC_000014.9 scf7180000172750 99.57 True fake: scaffold gap size wrong estimation (local) 44966403 44968303 224467 226366 NC_000014.9 scf7180000172750 99.95 True fake: scaffold gap size wrong estimation (local) 44968530 44969388 226477 227315 NC_000014.9 scf7180000172750 97.56 True fake: scaffold gap size wrong estimation (local) 44969620 44977745 227586 235518 NC_000014.9 scf7180000172750 97.6 True fake: scaffold gap size wrong estimation (local) 44977870 44985044 235774 242959 NC_000014.9 scf7180000172750 99.97 True fake: scaffold gap size wrong estimation (local) 44985140 44986803 243040 244703 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 44987992 44992625 245821 250417 NC_000014.9 scf7180000172750 98.58 True fake: scaffold gap size wrong estimation (local) 44992896 45000046 250566 257722 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45000235 45011366 258070 269124 NC_000014.9 scf7180000172750 99.14 True fake: scaffold gap size wrong estimation (local) 45011518 45025310 269269 283108 NC_000014.9 scf7180000172750 99.96 True fake: scaffold gap size wrong estimation (local) 45025592 45037798 283313 295675 NC_000014.9 scf7180000172750 96.51 True fake: scaffold gap size wrong estimation (local) 45037878 45040848 295831 298801 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45041936 45043227 299868 301159 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45044541 45045538 302412 303409 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45045708 45047169 303554 305015 NC_000014.9 scf7180000172750 99.79 True fake: scaffold gap size wrong estimation (local) 45049525 45050731 307175 308381 NC_000014.9 scf7180000172750 99.67 True fake: scaffold gap size wrong estimation (local) 45050892 45051557 308544 309209 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45051826 45053052 309571 310797 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45053267 45055597 311030 313360 NC_000014.9 scf7180000172750 98.28 True fake: scaffold gap size wrong estimation (local) 45055860 45059939 313480 317559 NC_000014.9 scf7180000172750 99.95 True fake: scaffold gap size wrong estimation (local) 45060233 45063334 317784 320885 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45064321 45069968 321813 327555 NC_000014.9 scf7180000172750 98.64 True fake: scaffold gap size wrong estimation (local) 45070109 45071034 327700 328625 NC_000014.9 scf7180000172750 99.89 True fake: scaffold gap size wrong estimation (local) 45071304 45074849 328712 332394 NC_000014.9 scf7180000172750 98.33 True fake: scaffold gap size wrong estimation (local) 45075908 45077346 333490 334928 NC_000014.9 scf7180000172750 98.61 True fake: scaffold gap size wrong estimation (local) 45078090 45080322 335629 337861 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45081974 45087613 339402 345041 NC_000014.9 scf7180000172750 99.96 True fake: scaffold gap size wrong estimation (local) 45087760 45092412 345091 349769 NC_000014.9 scf7180000172750 99.91 True fake: scaffold gap size wrong estimation (local) 45092503 45093276 349882 350655 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45093828 45105543 351125 362916 NC_000014.9 scf7180000172750 99.35 True fake: scaffold gap size wrong estimation (local) 45106309 45111525 363572 368813 NC_000014.9 scf7180000172750 99.89 True fake: scaffold gap size wrong estimation (local) 45111722 45122615 368997 379856 NC_000014.9 scf7180000172750 98.89 True fake: scaffold gap size wrong estimation (local) 45123879 45124532 381097 381750 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45125092 45126102 382183 383193 NC_000014.9 scf7180000172750 95.55 True fake: scaffold gap size wrong estimation (local) 45127437 45128244 383545 384352 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45128248 45131384 386191 389327 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45131638 45132459 389415 390236 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45132460 45133220 390524 391284 NC_000014.9 scf7180000172750 100.0 True local misassembly 45133420 45140325 391285 398190 NC_000014.9 scf7180000172750 99.7 True fake: not a misassembly (possible transposable element) 93614582 93615572 398191 399180 NC_000014.9 scf7180000172750 99.61 True fake: not a misassembly (possible transposable element) 45140303 45141168 399246 400111 NC_000014.9 scf7180000172750 99.88 True fake: scaffold gap size wrong estimation (local) 45141766 45142370 400602 401206 NC_000014.9 scf7180000172750 97.36 True local misassembly 45142532 45143718 401207 402393 NC_000014.9 scf7180000172750 96.46 True fake: scaffold gap size wrong estimation (local) 45143963 45145676 402829 404542 NC_000014.9 scf7180000172750 99.94 True fake: scaffold gap size wrong estimation (local) 45146856 45151909 405689 410663 NC_000014.9 scf7180000172750 98.42 True fake: scaffold gap size wrong estimation (local) 45152198 45156742 410922 415423 NC_000014.9 scf7180000172750 98.71 True fake: scaffold gap size wrong estimation (local) 45156924 45160006 415577 418659 NC_000014.9 scf7180000172750 99.9 True fake: scaffold gap size wrong estimation (local) 45160803 45166167 419363 424717 NC_000014.9 scf7180000172750 99.72 True fake: scaffold gap size wrong estimation (local) 45166411 45168786 424853 427260 NC_000014.9 scf7180000172750 99.5 True fake: scaffold gap size wrong estimation (local) 45169188 45170441 427706 428990 NC_000014.9 scf7180000172750 99.13 True fake: scaffold gap size wrong estimation (local) 45171150 45174212 429661 432721 NC_000014.9 scf7180000172750 99.93 True fake: scaffold gap size wrong estimation (local) 45174355 45177465 432860 435970 NC_000014.9 scf7180000172750 99.97 True fake: scaffold gap size wrong estimation (local) 45177466 45178979 436614 438127 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45179834 45184463 438847 443476 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45184951 45192399 443841 451186 NC_000014.9 scf7180000172750 98.35 True fake: scaffold gap size wrong estimation (local) 45192703 45194057 451581 452935 NC_000014.9 scf7180000172750 99.93 True fake: scaffold gap size wrong estimation (local) 45194297 45208327 453026 466775 NC_000014.9 scf7180000172750 96.98 True fake: scaffold gap size wrong estimation (local) 45208427 45214930 466887 473390 NC_000014.9 scf7180000172750 99.94 True fake: scaffold gap size wrong estimation (local) 45215022 45215739 473497 474214 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45215974 45221002 474373 479419 NC_000014.9 scf7180000172750 99.92 True fake: scaffold gap size wrong estimation (local) 45221396 45232223 479734 490617 NC_000014.9 scf7180000172750 97.84 True fake: scaffold gap size wrong estimation (local) 45232428 45245385 490776 503769 NC_000014.9 scf7180000172750 98.38 True indel: stretch of mismatches 45245482 45248064 503866 506448 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45248310 45268278 506790 526748 NC_000014.9 scf7180000172750 98.49 True fake: scaffold gap size wrong estimation (local) 45268618 45269768 527064 528214 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45270031 45273739 528424 532155 NC_000014.9 scf7180000172750 99.92 True fake: scaffold gap size wrong estimation (local) 45273936 45277013 532249 535333 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45277244 45279828 535479 538063 NC_000014.9 scf7180000172750 99.88 True fake: scaffold gap size wrong estimation (local) 45280363 45282476 538543 540656 NC_000014.9 scf7180000172750 98.96 True fake: scaffold gap size wrong estimation (local) 45282781 45283518 541050 541787 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45283799 45287232 541890 545323 NC_000014.9 scf7180000172750 99.97 True fake: scaffold gap size wrong estimation (local) 45287410 45288896 545462 546948 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45289164 45292680 547125 550642 NC_000014.9 scf7180000172750 99.97 True relocation, scaffold gap is present, inconsistency = 25162042 70454863 70455915 550783 551838 NC_000014.9 scf7180000172750 98.96 True fake: scaffold gap size wrong estimation (local) 70456327 70456872 552775 553320 NC_000014.9 scf7180000172750 97.9 True relocation, inconsistency = 208051 70244281 70248275 557312 553321 NC_000014.9 scf7180000172750 98.8 True relocation, scaffold gap is present, inconsistency = 24949409 45293246 45294176 558008 558938 NC_000014.9 scf7180000172750 99.79 True indel: stretch of mismatches 45294293 45294953 559055 559715 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45295196 45295719 560144 560667 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45295659 45320337 561175 585991 NC_000014.9 scf7180000172750 98.94 True fake: scaffold gap size wrong estimation (local) 45333893 45334516 599998 600621 NC_000014.9 scf7180000172750 99.52 True fake: scaffold gap size wrong estimation (local) 45335633 45339627 601724 605737 NC_000014.9 scf7180000172750 99.65 True fake: scaffold gap size wrong estimation (local) 45339708 45346187 605808 612287 NC_000014.9 scf7180000172750 99.97 True indel: indel (<= 5bp) 45346363 45346919 612460 613016 NC_000014.9 scf7180000172750 99.82 True fake: scaffold gap size wrong estimation (local) 45347136 45349188 613186 615238 NC_000014.9 scf7180000172750 99.95 True fake: scaffold gap size wrong estimation (local) 45351958 45360675 617492 626209 NC_000014.9 scf7180000172750 99.94 True fake: scaffold gap size wrong estimation (local) 45360864 45384268 626335 649761 NC_000014.9 scf7180000172750 99.96 True fake: scaffold gap size wrong estimation (local) 45385090 45389042 650502 654453 NC_000014.9 scf7180000172750 99.92 True fake: scaffold gap size wrong estimation (local) 45390832 45395963 656252 661383 NC_000014.9 scf7180000172750 99.57 True fake: scaffold gap size wrong estimation (local) 45395964 45396752 662114 662902 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45398131 45405322 663700 670891 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45405505 45412505 671068 678098 NC_000014.9 scf7180000172750 99.81 True fake: scaffold gap size wrong estimation (local) 45412690 45413611 678218 679139 NC_000014.9 scf7180000172750 99.89 True fake: scaffold gap size wrong estimation (local) 45414848 45415683 680613 681448 NC_000014.9 scf7180000172750 98.56 True fake: not a misassembly (possible transposable element) 43257645 43262585 681469 686411 NC_000014.9 scf7180000172750 99.86 True fake: not a misassembly (possible transposable element) 45417426 45418958 687157 688689 NC_000014.9 scf7180000172750 99.74 True fake: scaffold gap size wrong estimation (local) 45419210 45424081 688820 693718 NC_000014.9 scf7180000172750 99.65 True fake: scaffold gap size wrong estimation (local) 45425534 45426126 693739 694331 NC_000014.9 scf7180000172750 99.16 True local misassembly 45424159 45459016 694655 729401 NC_000014.9 scf7180000172750 97.86 True fake: scaffold gap size wrong estimation (local) 45460383 45463311 730684 733586 NC_000014.9 scf7180000172750 99.0 True fake: scaffold gap size wrong estimation (local) 45463834 45474779 733801 744779 NC_000014.9 scf7180000172750 99.78 True fake: scaffold gap size wrong estimation (local) 45495896 45497494 767666 769264 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45499524 45506559 770973 777978 NC_000014.9 scf7180000172750 99.46 True fake: scaffold gap size wrong estimation (local) 45506689 45511210 777999 782593 NC_000014.9 scf7180000172750 98.54 True fake: scaffold gap size wrong estimation (local) 45511424 45513817 782765 785158 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45513893 45515789 785289 787185 NC_000014.9 scf7180000172750 99.89 True fake: scaffold gap size wrong estimation (local) 45515956 45517386 787282 788712 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45517647 45527737 788968 799319 NC_000014.9 scf7180000172750 95.63 True fake: scaffold gap size wrong estimation (local) 45527998 45529400 799460 800862 NC_000014.9 scf7180000172750 99.93 True fake: scaffold gap size wrong estimation (local) 45529401 45533174 801062 804835 NC_000014.9 scf7180000172750 100.0 True local misassembly 45533175 45541022 805320 813167 NC_000014.9 scf7180000172750 99.83 True fake: scaffold gap size wrong estimation (local) 45541023 45543764 813540 816281 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45544104 45545088 816610 817594 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45545089 45545743 817796 818450 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45551472 45562251 825410 836420 NC_000014.9 scf7180000172750 98.18 True fake: scaffold gap size wrong estimation (local) 45562471 45569459 836609 843566 NC_000014.9 scf7180000172750 98.82 True fake: scaffold gap size wrong estimation (local) 45570528 45580702 844755 855249 NC_000014.9 scf7180000172750 97.33 True fake: scaffold gap size wrong estimation (local) 45580925 45591308 855438 865839 NC_000014.9 scf7180000172750 99.72 True indel: indel (<= 5bp) 45591352 45596663 865885 871282 NC_000014.9 scf7180000172750 98.49 True fake: scaffold gap size wrong estimation (local) 45598978 45602184 873256 876467 NC_000014.9 scf7180000172750 99.69 True fake: scaffold gap size wrong estimation (local) 45602386 45604749 876641 879005 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45605033 45605685 879417 880069 NC_000014.9 scf7180000172750 99.85 True fake: scaffold gap size wrong estimation (local) 45608180 45631984 882172 906038 NC_000014.9 scf7180000172750 98.98 True fake: scaffold gap size wrong estimation (local) 45632169 45635194 906179 909153 NC_000014.9 scf7180000172750 98.12 True fake: scaffold gap size wrong estimation (local) 45636458 45644748 910525 918764 NC_000014.9 scf7180000172750 99.3 True fake: scaffold gap size wrong estimation (local) 45644928 45663138 919175 937457 NC_000014.9 scf7180000172750 97.37 True fake: scaffold gap size wrong estimation (local) 45663017 45666778 938095 942060 NC_000014.9 scf7180000172750 95.11 True fake: not a misassembly (possible transposable element) 80453045 80454058 942061 943074 NC_000014.9 scf7180000172750 100.0 True fake: not a misassembly (possible transposable element) 45666754 45668407 943262 944915 NC_000014.9 scf7180000172750 100.0 True fake: scaffold gap size wrong estimation (local) 45669847 45673057 946204 949414 NC_000014.9 scf7180000172750 100.0 True fake: not a misassembly (possible transposable element) 42537031 42538203 949415 950587 NC_000014.9 scf7180000172750 99.44 True fake: not a misassembly (possible transposable element) 45673088 45685807 950608 963327 NC_000014.9 scf7180000172750 99.91 True fake: scaffold gap size wrong estimation (local) 45686103 45703438 963582 981199 NC_000014.9 scf7180000172750 98.07 True fake: scaffold gap size wrong estimation (local) 45704144 45713871 981918 991674 NC_000014.9 scf7180000172750 99.75 True fake: scaffold gap size wrong estimation (local) 45714138 45736361 991948 1014581 NC_000014.9 scf7180000172750 98.09 True fake: scaffold gap size wrong estimation (local) 45736640 45747749 1014791 1025879 NC_000014.9 scf7180000172750 99.74 True fake: scaffold gap size wrong estimation (local) 45747956 45750328 1026100 1028472 NC_000014.9 scf7180000172750 99.87 True fake: scaffold gap size wrong estimation (local) 45751183 45751903 1029422 1030142 NC_000014.9 scf7180000172750 99.86 True CONTIG scf7180000172750 1030992 misassembled 91505460 91506031 1804 2375 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 91506032 91506674 2466 3108 NC_000014.9 scf7180000172751 98.91 True fake: scaffold gap size wrong estimation (local) 91507460 91512819 4225 9517 NC_000014.9 scf7180000172751 98.71 True fake: scaffold gap size wrong estimation (local) 91513386 91513943 10125 10682 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 91514082 91517446 10822 14185 NC_000014.9 scf7180000172751 99.94 True fake: scaffold gap size wrong estimation (local) 91517834 91518870 14524 15560 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 91519149 91523054 15789 19542 NC_000014.9 scf7180000172751 95.88 True fake: scaffold gap size wrong estimation (local) 91523481 91524449 20030 20998 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 91524626 91528432 21174 25065 NC_000014.9 scf7180000172751 98.19 True fake: scaffold gap size wrong estimation (local) 91529873 91531007 26554 27688 NC_000014.9 scf7180000172751 99.56 True fake: scaffold gap size wrong estimation (local) 91531768 91532538 28481 29251 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 91532673 91533431 29411 30168 NC_000014.9 scf7180000172751 99.87 True fake: scaffold gap size wrong estimation (local) 91533622 91534570 30460 31408 NC_000014.9 scf7180000172751 99.58 True local misassembly 91534711 91535560 31409 32258 NC_000014.9 scf7180000172751 97.65 True indel: indel (> 5bp) 91535630 91536188 32259 32817 NC_000014.9 scf7180000172751 96.42 True fake: scaffold gap size wrong estimation (local) 91536382 91544289 33070 41303 NC_000014.9 scf7180000172751 96.19 True fake: scaffold gap size wrong estimation (local) 91544578 91545652 41483 42557 NC_000014.9 scf7180000172751 99.81 True relocation, scaffold gap is present, inconsistency = 11026187 80515791 80517800 45157 43148 NC_000014.9 scf7180000172751 99.95 True fake: scaffold gap size wrong estimation (local) 80514574 80515732 46757 45599 NC_000014.9 scf7180000172751 99.91 True fake: scaffold gap size wrong estimation (local) 80512575 80513545 48999 48029 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 80511467 80512574 50289 49182 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 80508796 80511053 52959 50702 NC_000014.9 scf7180000172751 99.96 True fake: scaffold gap size wrong estimation (local) 80508193 80508795 53734 53132 NC_000014.9 scf7180000172751 100.0 True fake: not a misassembly (possible transposable element) 49000649 49002158 55403 53894 NC_000014.9 scf7180000172751 99.87 True fake: not a misassembly (possible transposable element) 80489278 80507953 74014 55424 NC_000014.9 scf7180000172751 99.38 True fake: scaffold gap size wrong estimation (local) 80476895 80486386 88420 78931 NC_000014.9 scf7180000172751 99.43 True fake: scaffold gap size wrong estimation (local) 80472274 80476738 93012 88597 NC_000014.9 scf7180000172751 98.5 True fake: scaffold gap size wrong estimation (local) 80467714 80472055 97670 93329 NC_000014.9 scf7180000172751 99.95 True fake: scaffold gap size wrong estimation (local) 80449079 80467526 116225 97821 NC_000014.9 scf7180000172751 99.74 True fake: scaffold gap size wrong estimation (local) 80448127 80448871 117178 116434 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 80438613 80447885 126694 117400 NC_000014.9 scf7180000172751 99.96 True fake: scaffold gap size wrong estimation (local) 80437483 80438485 127963 126961 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 80424206 80436748 141083 128559 NC_000014.9 scf7180000172751 99.83 True fake: scaffold gap size wrong estimation (local) 80423147 80424026 142107 141228 NC_000014.9 scf7180000172751 100.0 True indel: stretch of mismatches 80390293 80423019 174899 142235 NC_000014.9 scf7180000172751 99.67 True fake: scaffold gap size wrong estimation (local) 80384262 80390011 180841 175093 NC_000014.9 scf7180000172751 99.95 True fake: scaffold gap size wrong estimation (local) 80374672 80384069 190340 180969 NC_000014.9 scf7180000172751 99.4 True fake: scaffold gap size wrong estimation (local) 80369624 80374478 195360 190505 NC_000014.9 scf7180000172751 99.77 True fake: scaffold gap size wrong estimation (local) 80353464 80367649 211069 196981 NC_000014.9 scf7180000172751 99.15 True fake: scaffold gap size wrong estimation (local) 80341436 80353316 223041 211161 NC_000014.9 scf7180000172751 99.94 True fake: scaffold gap size wrong estimation (local) 80322393 80341125 242003 223295 NC_000014.9 scf7180000172751 99.78 True fake: scaffold gap size wrong estimation (local) 80320351 80322126 244049 242274 NC_000014.9 scf7180000172751 98.76 True local misassembly 80319503 80320023 244722 244202 NC_000014.9 scf7180000172751 99.81 True fake: scaffold gap size wrong estimation (local) 80297891 80319456 266562 245197 NC_000014.9 scf7180000172751 99.02 True fake: scaffold gap size wrong estimation (local) 80287658 80296886 276596 267422 NC_000014.9 scf7180000172751 99.24 True fake: scaffold gap size wrong estimation (local) 80284658 80285865 279443 278236 NC_000014.9 scf7180000172751 99.92 True fake: scaffold gap size wrong estimation (local) 80274373 80284235 289684 279823 NC_000014.9 scf7180000172751 99.96 True fake: scaffold gap size wrong estimation (local) 80249953 80274224 314910 289772 NC_000014.9 scf7180000172751 96.55 True fake: scaffold gap size wrong estimation (local) 80240269 80245741 325346 319874 NC_000014.9 scf7180000172751 99.96 True fake: scaffold gap size wrong estimation (local) 80237074 80240062 328467 325479 NC_000014.9 scf7180000172751 99.97 True indel: indel (<= 5bp) 80227876 80236964 337681 328574 NC_000014.9 scf7180000172751 99.54 True fake: scaffold gap size wrong estimation (local) 80226642 80227742 338868 337769 NC_000014.9 scf7180000172751 99.73 True fake: scaffold gap size wrong estimation (local) 80186165 80225039 379991 340935 NC_000014.9 scf7180000172751 99.23 True fake: scaffold gap size wrong estimation (local) 80182494 80186006 383670 380135 NC_000014.9 scf7180000172751 99.74 True fake: scaffold gap size wrong estimation (local) 80121280 80182273 445982 383843 NC_000014.9 scf7180000172751 97.99 True fake: not a misassembly (possible transposable element) 84863529 84864983 447460 446006 NC_000014.9 scf7180000172751 100.0 True fake: not a misassembly (possible transposable element) 80094549 80121278 474304 447619 NC_000014.9 scf7180000172751 99.52 True fake: scaffold gap size wrong estimation (local) 80082918 80088610 488728 483036 NC_000014.9 scf7180000172751 99.95 True fake: scaffold gap size wrong estimation (local) 80044716 80082688 527287 488907 NC_000014.9 scf7180000172751 98.59 True relocation, scaffold gap is present, inconsistency = 13338670 66705031 66705977 527356 528302 NC_000014.9 scf7180000172751 100.0 True local misassembly 66703981 66704949 528323 529291 NC_000014.9 scf7180000172751 99.9 True fake: scaffold gap size wrong estimation (local) 66706806 66711588 529837 534619 NC_000014.9 scf7180000172751 99.94 True fake: scaffold gap size wrong estimation (local) 66712562 66721747 535447 544537 NC_000014.9 scf7180000172751 98.92 True fake: scaffold gap size wrong estimation (local) 66721976 66727407 545273 550698 NC_000014.9 scf7180000172751 98.53 True fake: scaffold gap size wrong estimation (local) 66728110 66736399 552437 560671 NC_000014.9 scf7180000172751 96.26 True fake: scaffold gap size wrong estimation (local) 66736508 66739239 560793 563524 NC_000014.9 scf7180000172751 99.96 True fake: scaffold gap size wrong estimation (local) 66739532 66742801 563748 567017 NC_000014.9 scf7180000172751 99.94 True fake: scaffold gap size wrong estimation (local) 66742802 66752934 568418 578550 NC_000014.9 scf7180000172751 99.92 True indel: indel (<= 5bp) 66752936 66757327 578551 582942 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 66757665 66763231 583271 588804 NC_000014.9 scf7180000172751 99.02 True fake: scaffold gap size wrong estimation (local) 66763587 66766757 589111 592281 NC_000014.9 scf7180000172751 99.87 True fake: scaffold gap size wrong estimation (local) 66766758 66767442 594054 594738 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 66767443 66771624 594753 598934 NC_000014.9 scf7180000172751 99.83 True indel: indel (> 5bp) 66771706 66773354 598935 600583 NC_000014.9 scf7180000172751 96.12 True fake: scaffold gap size wrong estimation (local) 66774224 66776890 601451 604117 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 66778109 66790774 605170 617765 NC_000014.9 scf7180000172751 99.23 True fake: scaffold gap size wrong estimation (local) 66791463 66793029 618380 619946 NC_000014.9 scf7180000172751 99.94 True fake: scaffold gap size wrong estimation (local) 66793157 66800015 620105 626975 NC_000014.9 scf7180000172751 99.78 True fake: scaffold gap size wrong estimation (local) 66800725 66805597 627811 632683 NC_000014.9 scf7180000172751 99.98 True fake: scaffold gap size wrong estimation (local) 66805745 66822059 632786 649057 NC_000014.9 scf7180000172751 99.7 True fake: scaffold gap size wrong estimation (local) 66822222 66834516 649309 661477 NC_000014.9 scf7180000172751 98.96 True fake: scaffold gap size wrong estimation (local) 66837649 66875877 666079 704877 NC_000014.9 scf7180000172751 98.33 True fake: scaffold gap size wrong estimation (local) 66876681 66877412 705587 706318 NC_000014.9 scf7180000172751 97.81 True fake: scaffold gap size wrong estimation (local) 66878171 66878808 706896 707533 NC_000014.9 scf7180000172751 100.0 True relocation, scaffold gap is present, inconsistency = -42930039 23951269 23952232 710033 710996 NC_000014.9 scf7180000172751 100.0 True fake: scaffold gap size wrong estimation (local) 23953023 23953679 711580 712578 NC_000014.9 scf7180000172751 100.0 True indel: indel (<= 5bp) 23953772 23955626 712672 714526 NC_000014.9 scf7180000172751 98.71 True relocation, scaffold gap is present, inconsistency = 82691 24039611 24040712 715820 716921 NC_000014.9 scf7180000172751 99.73 True fake: scaffold gap size wrong estimation (local) 24041351 24043315 717661 719614 NC_000014.9 scf7180000172751 97.9 True fake: scaffold gap size wrong estimation (local) 24043785 24044888 720443 721546 NC_000014.9 scf7180000172751 100.0 True relocation, scaffold gap is present, inconsistency = 21648315 45693276 45693976 722297 721597 NC_000014.9 scf7180000172751 100.0 True relocation, inconsistency = -34821321 80513740 80514596 723154 722298 NC_000014.9 scf7180000172751 99.88 True fake: scaffold gap size wrong estimation (local) 80511034 80511735 725541 724839 NC_000014.9 scf7180000172751 99.72 True CONTIG scf7180000172751 725541 misassembled 46970889 46972975 2087 1 NC_000014.9 scf7180000172752 99.86 True fake: scaffold gap size wrong estimation (local) 46965188 46969146 7432 3652 NC_000014.9 scf7180000172752 95.35 True fake: scaffold gap size wrong estimation (local) 46961904 46964920 10704 7688 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 46938558 46961672 34126 10853 NC_000014.9 scf7180000172752 99.37 True fake: scaffold gap size wrong estimation (local) 46931759 46938282 40836 34360 NC_000014.9 scf7180000172752 98.89 True fake: scaffold gap size wrong estimation (local) 46910790 46931540 61513 40939 NC_000014.9 scf7180000172752 98.68 True fake: not a misassembly (possible transposable element) 26735980 26736792 62346 61534 NC_000014.9 scf7180000172752 99.88 True fake: not a misassembly (possible transposable element) 46905788 46911066 67387 62347 NC_000014.9 scf7180000172752 95.42 True fake: scaffold gap size wrong estimation (local) 46903229 46904107 68286 67408 NC_000014.9 scf7180000172752 99.77 True fake: scaffold gap size wrong estimation (local) 46867528 46905799 106430 68387 NC_000014.9 scf7180000172752 98.89 True fake: scaffold gap size wrong estimation (local) 46858643 46865375 115169 108345 NC_000014.9 scf7180000172752 99.56 True fake: scaffold gap size wrong estimation (local) 46845156 46858442 128569 115278 NC_000014.9 scf7180000172752 99.8 True fake: scaffold gap size wrong estimation (local) 46844383 46844893 129254 128744 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 46832797 46844320 140874 129353 NC_000014.9 scf7180000172752 99.88 True fake: scaffold gap size wrong estimation (local) 46820555 46832547 153126 141132 NC_000014.9 scf7180000172752 99.91 True fake: scaffold gap size wrong estimation (local) 46795873 46820419 178176 153289 NC_000014.9 scf7180000172752 98.62 True fake: scaffold gap size wrong estimation (local) 46793965 46795615 180089 178439 NC_000014.9 scf7180000172752 99.94 True fake: scaffold gap size wrong estimation (local) 46792375 46793964 182201 180612 NC_000014.9 scf7180000172752 99.94 True indel: indel (<= 5bp) 46791084 46792374 183496 182206 NC_000014.9 scf7180000172752 99.69 True indel: indel (<= 5bp) 46788883 46791083 185701 183501 NC_000014.9 scf7180000172752 99.95 True fake: scaffold gap size wrong estimation (local) 46787972 46788682 186479 185769 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 46765175 46787002 209291 187453 NC_000014.9 scf7180000172752 99.68 True fake: scaffold gap size wrong estimation (local) 46762132 46763728 212252 210656 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 46753880 46761776 220457 212562 NC_000014.9 scf7180000172752 99.91 True fake: scaffold gap size wrong estimation (local) 46751047 46753653 223233 220627 NC_000014.9 scf7180000172752 99.92 True fake: scaffold gap size wrong estimation (local) 46733777 46750543 240365 223635 NC_000014.9 scf7180000172752 99.32 True fake: scaffold gap size wrong estimation (local) 46727731 46733484 246321 240568 NC_000014.9 scf7180000172752 99.98 True fake: scaffold gap size wrong estimation (local) 46711781 46726453 262189 247514 NC_000014.9 scf7180000172752 99.94 True fake: scaffold gap size wrong estimation (local) 46710285 46711510 263588 262363 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 46701543 46710196 272387 263667 NC_000014.9 scf7180000172752 99.77 True fake: scaffold gap size wrong estimation (local) 46680398 46701295 293451 272521 NC_000014.9 scf7180000172752 99.8 True fake: scaffold gap size wrong estimation (local) 46679477 46680260 294359 293576 NC_000014.9 scf7180000172752 99.87 True fake: scaffold gap size wrong estimation (local) 46667318 46678031 306256 295525 NC_000014.9 scf7180000172752 99.75 True fake: scaffold gap size wrong estimation (local) 46660026 46667107 313558 306464 NC_000014.9 scf7180000172752 99.11 True fake: not a misassembly (possible transposable element) 31652988 31653537 314113 313564 NC_000014.9 scf7180000172752 99.27 True fake: not a misassembly (possible transposable element) 46652193 46659949 321921 314165 NC_000014.9 scf7180000172752 99.86 True fake: scaffold gap size wrong estimation (local) 46648961 46652192 326276 323045 NC_000014.9 scf7180000172752 99.91 True fake: scaffold gap size wrong estimation (local) 46620804 46648674 354967 326481 NC_000014.9 scf7180000172752 97.7 True relocation, inconsistency = -23620575 70240694 70241378 355652 354968 NC_000014.9 scf7180000172752 99.85 True fake: scaffold gap size wrong estimation (local) 70237025 70240407 359498 356116 NC_000014.9 scf7180000172752 99.85 True fake: scaffold gap size wrong estimation (local) 70235706 70236541 360751 359916 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 70230472 70231205 367535 366802 NC_000014.9 scf7180000172752 99.86 True fake: scaffold gap size wrong estimation (local) 70223841 70228551 374327 369617 NC_000014.9 scf7180000172752 99.79 True fake: scaffold gap size wrong estimation (local) 70220582 70223380 377552 374751 NC_000014.9 scf7180000172752 99.78 True fake: scaffold gap size wrong estimation (local) 70215315 70220374 382809 377686 NC_000014.9 scf7180000172752 98.96 True fake: scaffold gap size wrong estimation (local) 70209459 70215095 388587 382944 NC_000014.9 scf7180000172752 99.7 True fake: scaffold gap size wrong estimation (local) 70206816 70209274 391257 388782 NC_000014.9 scf7180000172752 99.76 True fake: scaffold gap size wrong estimation (local) 70198543 70206590 399602 391400 NC_000014.9 scf7180000172752 97.29 True fake: scaffold gap size wrong estimation (local) 70196521 70197777 401740 400484 NC_000014.9 scf7180000172752 99.68 True fake: scaffold gap size wrong estimation (local) 70195627 70196161 402543 402009 NC_000014.9 scf7180000172752 99.44 True fake: scaffold gap size wrong estimation (local) 70185237 70194742 412641 403207 NC_000014.9 scf7180000172752 99.11 True fake: scaffold gap size wrong estimation (local) 70161305 70184976 436499 412840 NC_000014.9 scf7180000172752 99.75 True fake: scaffold gap size wrong estimation (local) 70151263 70160988 446504 436733 NC_000014.9 scf7180000172752 96.77 True fake: scaffold gap size wrong estimation (local) 70148015 70151036 449692 446671 NC_000014.9 scf7180000172752 99.97 True fake: scaffold gap size wrong estimation (local) 70144630 70148014 455059 451675 NC_000014.9 scf7180000172752 99.91 True fake: scaffold gap size wrong estimation (local) 70137803 70144321 461815 455297 NC_000014.9 scf7180000172752 99.94 True fake: scaffold gap size wrong estimation (local) 70123588 70137169 475905 462333 NC_000014.9 scf7180000172752 99.85 True fake: scaffold gap size wrong estimation (local) 70110952 70122848 488520 476598 NC_000014.9 scf7180000172752 99.56 True fake: scaffold gap size wrong estimation (local) 70105261 70110334 494109 489096 NC_000014.9 scf7180000172752 98.62 True fake: scaffold gap size wrong estimation (local) 70096080 70105074 503237 494245 NC_000014.9 scf7180000172752 99.89 True fake: scaffold gap size wrong estimation (local) 70086544 70095927 512732 503349 NC_000014.9 scf7180000172752 99.82 True fake: scaffold gap size wrong estimation (local) 70066827 70086382 532365 512829 NC_000014.9 scf7180000172752 99.78 True fake: scaffold gap size wrong estimation (local) 69985983 70066576 613275 532635 NC_000014.9 scf7180000172752 99.88 True fake: not a misassembly (possible transposable element) 96576397 96577692 613296 614591 NC_000014.9 scf7180000172752 100.0 True fake: not a misassembly (possible transposable element) 69984891 69985565 615266 614592 NC_000014.9 scf7180000172752 99.86 True fake: scaffold gap size wrong estimation (local) 69962602 69984671 638916 616906 NC_000014.9 scf7180000172752 99.3 True fake: scaffold gap size wrong estimation (local) 69923216 69961787 678247 640099 NC_000014.9 scf7180000172752 98.81 True fake: scaffold gap size wrong estimation (local) 69903905 69923018 697554 678469 NC_000014.9 scf7180000172752 99.48 True fake: scaffold gap size wrong estimation (local) 69884180 69902782 717289 698675 NC_000014.9 scf7180000172752 99.87 True fake: scaffold gap size wrong estimation (local) 69875666 69883890 725672 717450 NC_000014.9 scf7180000172752 99.7 True fake: scaffold gap size wrong estimation (local) 69857325 69875491 744489 725832 NC_000014.9 scf7180000172752 95.49 True relocation, scaffold gap is present, inconsistency = 3434130 66421673 66423174 746011 744510 NC_000014.9 scf7180000172752 99.93 True relocation, inconsistency = -3426415 69847178 69848087 746921 746012 NC_000014.9 scf7180000172752 100.0 True relocation, scaffold gap is present, inconsistency = -10122 69846339 69857279 757847 746942 NC_000014.9 scf7180000172752 99.54 True fake: scaffold gap size wrong estimation (local) 69836145 69846204 768183 758132 NC_000014.9 scf7180000172752 96.18 True fake: scaffold gap size wrong estimation (local) 69831180 69835808 773117 768511 NC_000014.9 scf7180000172752 99.26 True fake: not a misassembly (possible transposable element) 91647555 91649136 774720 773139 NC_000014.9 scf7180000172752 99.76 True fake: not a misassembly (possible transposable element) 69826048 69830490 779080 774721 NC_000014.9 scf7180000172752 96.89 True relocation, scaffold gap is present, inconsistency = 44539474 25285740 25286340 779914 779314 NC_000014.9 scf7180000172752 96.67 True indel: indel (> 5bp) 25266758 25285566 798855 780098 NC_000014.9 scf7180000172752 99.42 True fake: scaffold gap size wrong estimation (local) 25264872 25266359 800816 799329 NC_000014.9 scf7180000172752 99.18 True fake: scaffold gap size wrong estimation (local) 25262439 25263450 803215 802204 NC_000014.9 scf7180000172752 100.0 True fake: scaffold gap size wrong estimation (local) 25235167 25262233 830338 803397 NC_000014.9 scf7180000172752 99.09 True fake: scaffold gap size wrong estimation (local) 25231882 25234904 833587 830436 NC_000014.9 scf7180000172752 95.49 True fake: scaffold gap size wrong estimation (local) 25228157 25231790 837319 833686 NC_000014.9 scf7180000172752 99.92 True fake: scaffold gap size wrong estimation (local) 25210952 25227931 854452 837538 NC_000014.9 scf7180000172752 99.45 True fake: scaffold gap size wrong estimation (local) 25202310 25204187 864956 863079 NC_000014.9 scf7180000172752 99.95 True fake: scaffold gap size wrong estimation (local) 25199563 25202150 867781 865194 NC_000014.9 scf7180000172752 99.81 True fake: scaffold gap size wrong estimation (local) 25189330 25199479 878035 867892 NC_000014.9 scf7180000172752 99.78 True fake: scaffold gap size wrong estimation (local) 25184082 25184771 882630 881928 NC_000014.9 scf7180000172752 99.27 True fake: scaffold gap size wrong estimation (local) 25181257 25183506 885494 883245 NC_000014.9 scf7180000172752 99.73 True fake: scaffold gap size wrong estimation (local) 25173188 25181042 893428 885664 NC_000014.9 scf7180000172752 98.78 True CONTIG scf7180000172752 893428 misassembled 48170484 48178380 17 7923 NC_000014.9 scf7180000172753 99.67 True fake: scaffold gap size wrong estimation (local) 48178507 48187112 8018 16616 NC_000014.9 scf7180000172753 99.78 True fake: scaffold gap size wrong estimation (local) 48193131 48243450 26184 76294 NC_000014.9 scf7180000172753 99.45 True fake: scaffold gap size wrong estimation (local) 48243629 48253367 76437 86173 NC_000014.9 scf7180000172753 99.88 True fake: scaffold gap size wrong estimation (local) 48255578 48256171 87887 88480 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48257509 48258224 90537 91252 NC_000014.9 scf7180000172753 97.63 True fake: scaffold gap size wrong estimation (local) 48259824 48260369 94088 94634 NC_000014.9 scf7180000172753 99.27 True fake: scaffold gap size wrong estimation (local) 48285606 48287425 114055 115884 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48287730 48294689 116209 123168 NC_000014.9 scf7180000172753 99.97 True fake: scaffold gap size wrong estimation (local) 48294960 48314069 123427 142536 NC_000014.9 scf7180000172753 99.97 True fake: scaffold gap size wrong estimation (local) 48315453 48330254 143769 158565 NC_000014.9 scf7180000172753 98.86 True fake: scaffold gap size wrong estimation (local) 48330505 48332214 158704 160413 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48332515 48337284 160697 165498 NC_000014.9 scf7180000172753 99.27 True indel: indel (<= 5bp) 48337400 48338546 165612 166758 NC_000014.9 scf7180000172753 99.3 True fake: scaffold gap size wrong estimation (local) 48339384 48354940 167509 183065 NC_000014.9 scf7180000172753 99.97 True fake: scaffold gap size wrong estimation (local) 48355230 48357646 183347 185763 NC_000014.9 scf7180000172753 99.88 True fake: scaffold gap size wrong estimation (local) 48357933 48360522 186030 188676 NC_000014.9 scf7180000172753 96.34 True fake: scaffold gap size wrong estimation (local) 48360677 48367082 188743 195068 NC_000014.9 scf7180000172753 95.59 True fake: scaffold gap size wrong estimation (local) 48370494 48371347 198874 199727 NC_000014.9 scf7180000172753 99.88 True fake: scaffold gap size wrong estimation (local) 48372177 48377289 200648 205765 NC_000014.9 scf7180000172753 99.9 True fake: scaffold gap size wrong estimation (local) 48377535 48379373 205934 207772 NC_000014.9 scf7180000172753 99.95 True fake: scaffold gap size wrong estimation (local) 48379522 48409510 207867 238419 NC_000014.9 scf7180000172753 98.21 True fake: scaffold gap size wrong estimation (local) 48416389 48417369 245562 246542 NC_000014.9 scf7180000172753 99.59 True fake: scaffold gap size wrong estimation (local) 48417601 48428899 246784 258051 NC_000014.9 scf7180000172753 99.61 True fake: scaffold gap size wrong estimation (local) 48429098 48430004 258284 259190 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48430112 48431797 259315 261000 NC_000014.9 scf7180000172753 99.53 True fake: scaffold gap size wrong estimation (local) 48431798 48432751 261222 262175 NC_000014.9 scf7180000172753 99.9 True indel: indel (<= 5bp) 48432753 48433978 262176 263401 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48433719 48437769 263691 267742 NC_000014.9 scf7180000172753 99.93 True fake: scaffold gap size wrong estimation (local) 48437887 48439133 267897 269138 NC_000014.9 scf7180000172753 99.1 True fake: scaffold gap size wrong estimation (local) 48440542 48442422 270417 272297 NC_000014.9 scf7180000172753 99.89 True fake: scaffold gap size wrong estimation (local) 48442905 48445348 272788 275231 NC_000014.9 scf7180000172753 99.06 True fake: scaffold gap size wrong estimation (local) 48445791 48447070 275769 277047 NC_000014.9 scf7180000172753 99.69 True fake: scaffold gap size wrong estimation (local) 48447376 48453166 277297 283083 NC_000014.9 scf7180000172753 99.6 True fake: not a misassembly (possible transposable element) 35705264 35705839 286076 285501 NC_000014.9 scf7180000172753 99.83 True fake: not a misassembly (possible transposable element) 48454401 48481958 286128 313577 NC_000014.9 scf7180000172753 98.91 True fake: scaffold gap size wrong estimation (local) 48486306 48492812 322218 328717 NC_000014.9 scf7180000172753 99.77 True fake: scaffold gap size wrong estimation (local) 48492737 48543969 329324 380767 NC_000014.9 scf7180000172753 98.28 True fake: scaffold gap size wrong estimation (local) 48544873 48546684 381605 383416 NC_000014.9 scf7180000172753 99.78 True fake: scaffold gap size wrong estimation (local) 48546937 48547711 383864 384638 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 48547712 48548450 385016 385754 NC_000014.9 scf7180000172753 99.86 True fake: scaffold gap size wrong estimation (local) 48548451 48557651 386055 395255 NC_000014.9 scf7180000172753 99.76 True fake: scaffold gap size wrong estimation (local) 48559035 48559657 396650 397272 NC_000014.9 scf7180000172753 99.68 True local misassembly 48557316 48559073 397293 399050 NC_000014.9 scf7180000172753 99.83 True indel: indel (> 5bp) 48559579 48570689 399487 410597 NC_000014.9 scf7180000172753 99.92 True relocation, scaffold gap is present, inconsistency = 10828376 59405278 59409230 420780 416810 NC_000014.9 scf7180000172753 99.24 True fake: scaffold gap size wrong estimation (local) 59402684 59403461 423271 422426 NC_000014.9 scf7180000172753 98.58 True fake: scaffold gap size wrong estimation (local) 59397741 59400650 427741 424816 NC_000014.9 scf7180000172753 98.87 True fake: scaffold gap size wrong estimation (local) 59396922 59397507 428625 428040 NC_000014.9 scf7180000172753 99.83 True fake: scaffold gap size wrong estimation (local) 59394657 59396155 430720 429222 NC_000014.9 scf7180000172753 99.8 True fake: scaffold gap size wrong estimation (local) 59387924 59394526 437492 430886 NC_000014.9 scf7180000172753 99.89 True fake: scaffold gap size wrong estimation (local) 59384819 59386462 440515 438885 NC_000014.9 scf7180000172753 98.91 True fake: scaffold gap size wrong estimation (local) 59358804 59383973 466448 441343 NC_000014.9 scf7180000172753 99.33 True fake: scaffold gap size wrong estimation (local) 59357697 59358605 467492 466584 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 59354334 59357524 470852 467662 NC_000014.9 scf7180000172753 100.0 True fake: scaffold gap size wrong estimation (local) 59327599 59354212 497832 470956 NC_000014.9 scf7180000172753 99.03 True fake: scaffold gap size wrong estimation (local) 59310336 59327403 515046 498013 NC_000014.9 scf7180000172753 99.51 True fake: scaffold gap size wrong estimation (local) 59289127 59310127 536268 515260 NC_000014.9 scf7180000172753 99.69 True fake: scaffold gap size wrong estimation (local) 59260026 59289027 565422 536446 NC_000014.9 scf7180000172753 99.83 True fake: scaffold gap size wrong estimation (local) 59249019 59259787 576424 565654 NC_000014.9 scf7180000172753 99.91 True fake: scaffold gap size wrong estimation (local) 59242763 59248814 582608 576562 NC_000014.9 scf7180000172753 99.87 True fake: scaffold gap size wrong estimation (local) 59235575 59242617 589771 582729 NC_000014.9 scf7180000172753 99.83 True fake: scaffold gap size wrong estimation (local) 59233444 59234004 591819 591259 NC_000014.9 scf7180000172753 98.04 True indel: indel (> 5bp) 59232893 59233443 592379 591829 NC_000014.9 scf7180000172753 99.64 True fake: scaffold gap size wrong estimation (local) 59225258 59232675 600179 592761 NC_000014.9 scf7180000172753 99.89 True fake: scaffold gap size wrong estimation (local) 59209242 59225021 616000 600334 NC_000014.9 scf7180000172753 99.05 True fake: scaffold gap size wrong estimation (local) 59203264 59208946 622197 616535 NC_000014.9 scf7180000172753 99.36 True fake: scaffold gap size wrong estimation (local) 59201798 59203034 623597 622361 NC_000014.9 scf7180000172753 98.79 True fake: scaffold gap size wrong estimation (local) 59198436 59200947 626941 624430 NC_000014.9 scf7180000172753 99.96 True fake: scaffold gap size wrong estimation (local) 59197144 59198218 628271 627197 NC_000014.9 scf7180000172753 99.81 True fake: scaffold gap size wrong estimation (local) 59195366 59196480 629913 628800 NC_000014.9 scf7180000172753 99.91 True fake: scaffold gap size wrong estimation (local) 59182941 59195153 642269 630135 NC_000014.9 scf7180000172753 99.34 True fake: scaffold gap size wrong estimation (local) 59178932 59181269 646431 644094 NC_000014.9 scf7180000172753 100.0 True CONTIG scf7180000172753 646431 misassembled 72547741 72589355 42135 560 NC_000014.9 scf7180000172754 99.84 True fake: not a misassembly (possible transposable element) 87850949 87852055 42187 43293 NC_000014.9 scf7180000172754 100.0 True fake: not a misassembly (possible transposable element) 72526379 72548376 65292 43294 NC_000014.9 scf7180000172754 99.42 True fake: scaffold gap size wrong estimation (local) 72509206 72526120 82449 65514 NC_000014.9 scf7180000172754 99.94 True fake: scaffold gap size wrong estimation (local) 72508593 72509109 83070 82554 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 72507061 72508451 84653 83231 NC_000014.9 scf7180000172754 99.07 True fake: scaffold gap size wrong estimation (local) 72504986 72506891 86754 84849 NC_000014.9 scf7180000172754 99.95 True indel: indel (> 5bp) 72503163 72504869 88552 86846 NC_000014.9 scf7180000172754 99.94 True fake: scaffold gap size wrong estimation (local) 72482060 72502568 110189 89103 NC_000014.9 scf7180000172754 97.22 True fake: scaffold gap size wrong estimation (local) 72475661 72481823 116544 110362 NC_000014.9 scf7180000172754 99.82 True fake: scaffold gap size wrong estimation (local) 72470889 72475558 121378 116666 NC_000014.9 scf7180000172754 99.21 True fake: scaffold gap size wrong estimation (local) 72453632 72470678 138502 121565 NC_000014.9 scf7180000172754 99.11 True fake: scaffold gap size wrong estimation (local) 72452225 72453361 139768 138632 NC_000014.9 scf7180000172754 99.91 True indel: indel (<= 5bp) 72448517 72452224 143478 139771 NC_000014.9 scf7180000172754 99.78 True indel: indel (<= 5bp) 72445866 72448511 146124 143479 NC_000014.9 scf7180000172754 99.77 True fake: scaffold gap size wrong estimation (local) 72440961 72445341 151658 147278 NC_000014.9 scf7180000172754 99.93 True fake: scaffold gap size wrong estimation (local) 72437344 72440434 155229 152139 NC_000014.9 scf7180000172754 99.94 True fake: scaffold gap size wrong estimation (local) 72416124 72437066 176387 155425 NC_000014.9 scf7180000172754 99.85 True fake: scaffold gap size wrong estimation (local) 72415056 72415996 177457 176517 NC_000014.9 scf7180000172754 99.26 True fake: scaffold gap size wrong estimation (local) 72414183 72414980 178355 177558 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 72390369 72395588 203097 197868 NC_000014.9 scf7180000172754 99.92 True fake: scaffold gap size wrong estimation (local) 72387482 72390082 205916 203316 NC_000014.9 scf7180000172754 99.96 True fake: scaffold gap size wrong estimation (local) 72384975 72387388 208496 206083 NC_000014.9 scf7180000172754 99.88 True fake: scaffold gap size wrong estimation (local) 72380953 72384792 212487 208658 NC_000014.9 scf7180000172754 99.61 True fake: scaffold gap size wrong estimation (local) 72360496 72380846 233015 212616 NC_000014.9 scf7180000172754 99.45 True fake: scaffold gap size wrong estimation (local) 72355395 72360336 238113 233160 NC_000014.9 scf7180000172754 99.7 True fake: scaffold gap size wrong estimation (local) 72354488 72355231 239235 238492 NC_000014.9 scf7180000172754 99.87 True fake: scaffold gap size wrong estimation (local) 72325565 72353811 268789 239616 NC_000014.9 scf7180000172754 95.5 True fake: not a misassembly (possible transposable element) 106321786 106322989 270013 268810 NC_000014.9 scf7180000172754 100.0 True fake: not a misassembly (possible transposable element) 72323943 72324459 270550 270034 NC_000014.9 scf7180000172754 99.81 True relocation, scaffold gap is present, inconsistency = -33997248 106319372 106321032 272369 270709 NC_000014.9 scf7180000172754 99.94 True relocation, inconsistency = 30503117 75813271 75816254 272370 275376 NC_000014.9 scf7180000172754 99.87 True fake: not a misassembly (possible transposable element) 72320471 72323783 278709 275397 NC_000014.9 scf7180000172754 99.79 True fake: not a misassembly (possible transposable element) 75818033 75818588 278789 279345 NC_000014.9 scf7180000172754 99.82 True local misassembly 75816258 75816975 279366 280083 NC_000014.9 scf7180000172754 99.72 True relocation, scaffold gap is present, inconsistency = 3495856 72316602 72320381 283745 280104 NC_000014.9 scf7180000172754 95.93 True fake: scaffold gap size wrong estimation (local) 72306756 72316487 293491 284029 NC_000014.9 scf7180000172754 96.9 True fake: scaffold gap size wrong estimation (local) 72306214 72306799 294589 294004 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 72303464 72306031 297232 294660 NC_000014.9 scf7180000172754 99.65 True fake: scaffold gap size wrong estimation (local) 72298664 72303268 302075 297471 NC_000014.9 scf7180000172754 99.93 True fake: scaffold gap size wrong estimation (local) 72297640 72298440 303029 302229 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 72295295 72297428 305331 303198 NC_000014.9 scf7180000172754 99.95 True fake: scaffold gap size wrong estimation (local) 72287730 72295035 312939 305631 NC_000014.9 scf7180000172754 99.81 True fake: scaffold gap size wrong estimation (local) 72285249 72286486 315557 314320 NC_000014.9 scf7180000172754 98.22 True local misassembly 72283864 72285059 316753 315558 NC_000014.9 scf7180000172754 98.75 True fake: scaffold gap size wrong estimation (local) 72281358 72283863 319285 316780 NC_000014.9 scf7180000172754 99.0 True fake: scaffold gap size wrong estimation (local) 72271929 72281161 328716 319451 NC_000014.9 scf7180000172754 98.94 True fake: scaffold gap size wrong estimation (local) 72269577 72271173 330959 329363 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 72267155 72269139 334386 332402 NC_000014.9 scf7180000172754 98.89 True indel: indel (> 5bp) 72265940 72267101 335548 334387 NC_000014.9 scf7180000172754 99.83 True indel: indel (<= 5bp) 72263754 72265938 337733 335549 NC_000014.9 scf7180000172754 99.91 True fake: scaffold gap size wrong estimation (local) 72261745 72263520 340190 338415 NC_000014.9 scf7180000172754 99.94 True fake: scaffold gap size wrong estimation (local) 72259917 72262341 343013 340589 NC_000014.9 scf7180000172754 100.0 True fake: not a misassembly (possible transposable element) 73374140 73374734 343034 343628 NC_000014.9 scf7180000172754 99.66 True fake: not a misassembly (possible transposable element) 72250204 72259649 353106 343649 NC_000014.9 scf7180000172754 99.81 True fake: scaffold gap size wrong estimation (local) 72243130 72249798 360207 353428 NC_000014.9 scf7180000172754 97.12 True fake: scaffold gap size wrong estimation (local) 72241156 72242850 362110 360416 NC_000014.9 scf7180000172754 99.94 True fake: scaffold gap size wrong estimation (local) 72228959 72240932 374253 362280 NC_000014.9 scf7180000172754 99.56 True indel: indel (> 5bp) 72228319 72228944 374879 374254 NC_000014.9 scf7180000172754 95.37 True indel: indel (> 5bp) 72226772 72228274 376382 374880 NC_000014.9 scf7180000172754 99.6 True fake: scaffold gap size wrong estimation (local) 72225451 72226771 378810 377490 NC_000014.9 scf7180000172754 99.7 True fake: scaffold gap size wrong estimation (local) 72193236 72225347 411113 379071 NC_000014.9 scf7180000172754 99.28 True fake: scaffold gap size wrong estimation (local) 72182428 72192993 421755 411199 NC_000014.9 scf7180000172754 99.8 True fake: scaffold gap size wrong estimation (local) 72174335 72182152 429754 421937 NC_000014.9 scf7180000172754 99.91 True fake: scaffold gap size wrong estimation (local) 72163879 72174220 440366 430031 NC_000014.9 scf7180000172754 99.89 True fake: scaffold gap size wrong estimation (local) 72162926 72163661 441370 440635 NC_000014.9 scf7180000172754 100.0 True relocation, scaffold gap is present, inconsistency = 8824344 63334806 63336866 445149 443086 NC_000014.9 scf7180000172754 99.85 True fake: scaffold gap size wrong estimation (local) 63325391 63334423 454756 445652 NC_000014.9 scf7180000172754 99.59 True fake: scaffold gap size wrong estimation (local) 63320779 63324701 459346 455420 NC_000014.9 scf7180000172754 99.92 True fake: scaffold gap size wrong estimation (local) 63307669 63320492 472279 459602 NC_000014.9 scf7180000172754 98.67 True fake: scaffold gap size wrong estimation (local) 63305876 63307439 474082 472519 NC_000014.9 scf7180000172754 99.68 True fake: scaffold gap size wrong estimation (local) 63303380 63304487 477054 475928 NC_000014.9 scf7180000172754 99.46 True fake: scaffold gap size wrong estimation (local) 63298884 63303114 481596 477349 NC_000014.9 scf7180000172754 99.69 True fake: scaffold gap size wrong estimation (local) 63297296 63298783 483145 481658 NC_000014.9 scf7180000172754 99.93 True fake: scaffold gap size wrong estimation (local) 63293854 63297111 486593 483336 NC_000014.9 scf7180000172754 100.0 True fake: scaffold gap size wrong estimation (local) 63278800 63293725 501747 486737 NC_000014.9 scf7180000172754 99.69 True fake: scaffold gap size wrong estimation (local) 63276249 63278458 504299 502088 NC_000014.9 scf7180000172754 99.86 True relocation, scaffold gap is present, inconsistency = -7106485 70375464 70382014 511626 505019 NC_000014.9 scf7180000172754 97.87 True fake: scaffold gap size wrong estimation (local) 70371639 70374934 515414 512119 NC_000014.9 scf7180000172754 99.85 True fake: not a misassembly (possible transposable element) 95836677 95837352 515594 516269 NC_000014.9 scf7180000172754 100.0 True fake: not a misassembly (possible transposable element) 70362503 70371473 525350 516270 NC_000014.9 scf7180000172754 99.8 True fake: scaffold gap size wrong estimation (local) 70360284 70362382 527520 525391 NC_000014.9 scf7180000172754 99.95 True fake: scaffold gap size wrong estimation (local) 70353260 70360110 534574 527709 NC_000014.9 scf7180000172754 99.65 True fake: scaffold gap size wrong estimation (local) 70336148 70352290 551648 535505 NC_000014.9 scf7180000172754 99.8 True fake: scaffold gap size wrong estimation (local) 70331250 70336022 556469 551772 NC_000014.9 scf7180000172754 98.22 True fake: scaffold gap size wrong estimation (local) 70329728 70331131 557974 556571 NC_000014.9 scf7180000172754 99.93 True fake: scaffold gap size wrong estimation (local) 70326305 70328091 561210 559424 NC_000014.9 scf7180000172754 99.89 True fake: scaffold gap size wrong estimation (local) 70294865 70295779 591041 590126 NC_000014.9 scf7180000172754 99.45 True fake: scaffold gap size wrong estimation (local) 70282769 70293633 603275 592283 NC_000014.9 scf7180000172754 98.8 True fake: scaffold gap size wrong estimation (local) 70280770 70282444 605344 603596 NC_000014.9 scf7180000172754 98.68 True fake: scaffold gap size wrong estimation (local) 70278076 70279415 608454 607113 NC_000014.9 scf7180000172754 99.78 True relocation, scaffold gap is present, inconsistency = 6569069 63706119 63706806 610655 611342 NC_000014.9 scf7180000172754 100.0 True CONTIG scf7180000172754 611342 misassembled 56169774 56171761 1 1988 NC_000014.9 scf7180000172755 100.0 True fake: scaffold gap size wrong estimation (local) 56174140 56230359 3993 60480 NC_000014.9 scf7180000172755 99.38 True fake: scaffold gap size wrong estimation (local) 56234668 56242807 65656 73802 NC_000014.9 scf7180000172755 99.62 True fake: not a misassembly (possible transposable element) 92269075 92269680 74408 73803 NC_000014.9 scf7180000172755 99.84 True fake: not a misassembly (possible transposable element) 56242781 56250490 74447 82155 NC_000014.9 scf7180000172755 99.86 True indel: stretch of mismatches 56250589 56252759 82254 84424 NC_000014.9 scf7180000172755 99.91 True fake: scaffold gap size wrong estimation (local) 56253065 56254186 84989 86110 NC_000014.9 scf7180000172755 99.82 True fake: scaffold gap size wrong estimation (local) 56255542 56308193 87217 140263 NC_000014.9 scf7180000172755 99.21 True fake: scaffold gap size wrong estimation (local) 56308297 56326448 140365 158537 NC_000014.9 scf7180000172755 99.79 True fake: scaffold gap size wrong estimation (local) 56326613 56327280 158597 159264 NC_000014.9 scf7180000172755 99.85 True fake: scaffold gap size wrong estimation (local) 56327492 56331180 159562 163264 NC_000014.9 scf7180000172755 99.86 True fake: scaffold gap size wrong estimation (local) 56331061 56337522 163744 170075 NC_000014.9 scf7180000172755 97.84 True fake: scaffold gap size wrong estimation (local) 56337622 56343474 170201 176073 NC_000014.9 scf7180000172755 99.9 True fake: scaffold gap size wrong estimation (local) 56343682 56360594 176433 193178 NC_000014.9 scf7180000172755 95.55 True fake: scaffold gap size wrong estimation (local) 56363838 56368611 197243 202024 NC_000014.9 scf7180000172755 99.69 True fake: scaffold gap size wrong estimation (local) 56369087 56370378 202413 203704 NC_000014.9 scf7180000172755 100.0 True fake: scaffold gap size wrong estimation (local) 56370379 56370949 203916 204486 NC_000014.9 scf7180000172755 99.65 True fake: scaffold gap size wrong estimation (local) 56371487 56387318 204942 220791 NC_000014.9 scf7180000172755 99.75 True fake: scaffold gap size wrong estimation (local) 56388559 56391990 221982 225413 NC_000014.9 scf7180000172755 99.91 True fake: scaffold gap size wrong estimation (local) 56392430 56393744 225639 226965 NC_000014.9 scf7180000172755 99.92 True fake: scaffold gap size wrong estimation (local) 56394123 56396021 227764 229662 NC_000014.9 scf7180000172755 99.84 True fake: scaffold gap size wrong estimation (local) 56397896 56416659 231305 250092 NC_000014.9 scf7180000172755 99.85 True fake: scaffold gap size wrong estimation (local) 56416752 56417851 250196 251295 NC_000014.9 scf7180000172755 99.82 True fake: scaffold gap size wrong estimation (local) 56418038 56421964 251417 255343 NC_000014.9 scf7180000172755 99.8 True fake: scaffold gap size wrong estimation (local) 56422087 56432201 255453 265549 NC_000014.9 scf7180000172755 99.67 True fake: scaffold gap size wrong estimation (local) 56432264 56441814 265854 275363 NC_000014.9 scf7180000172755 99.37 True fake: scaffold gap size wrong estimation (local) 56447575 56448352 277987 278764 NC_000014.9 scf7180000172755 99.74 True fake: scaffold gap size wrong estimation (local) 56448767 56454923 279208 285453 NC_000014.9 scf7180000172755 98.8 True fake: scaffold gap size wrong estimation (local) 56460224 56475472 294245 309536 NC_000014.9 scf7180000172755 99.84 True fake: scaffold gap size wrong estimation (local) 56475672 56489348 309690 323363 NC_000014.9 scf7180000172755 99.55 True fake: scaffold gap size wrong estimation (local) 56489595 56504130 323645 338069 NC_000014.9 scf7180000172755 98.37 True fake: scaffold gap size wrong estimation (local) 56504233 56511301 338161 345260 NC_000014.9 scf7180000172755 99.52 True fake: scaffold gap size wrong estimation (local) 56511545 56513024 345509 346988 NC_000014.9 scf7180000172755 100.0 True relocation, inconsistency = -10604541 45908484 45923696 346989 362538 NC_000014.9 scf7180000172755 96.67 True fake: scaffold gap size wrong estimation (local) 45923871 45926483 362676 365308 NC_000014.9 scf7180000172755 99.89 True fake: scaffold gap size wrong estimation (local) 45930883 45932063 372439 373619 NC_000014.9 scf7180000172755 100.0 True fake: scaffold gap size wrong estimation (local) 45933508 45935602 375006 377100 NC_000014.9 scf7180000172755 99.81 True relocation, scaffold gap is present, inconsistency = 3473996 42458656 42459491 377956 377121 NC_000014.9 scf7180000172755 99.41 True relocation, inconsistency = 822969 43282461 43283369 377957 378865 NC_000014.9 scf7180000172755 99.78 True relocation, scaffold gap is present, inconsistency = 2652269 45935848 45991001 379075 434246 NC_000014.9 scf7180000172755 99.84 True fake: scaffold gap size wrong estimation (local) 45993044 45999855 436073 442758 NC_000014.9 scf7180000172755 97.64 True fake: scaffold gap size wrong estimation (local) 46002135 46011035 444717 453830 NC_000014.9 scf7180000172755 97.47 True fake: scaffold gap size wrong estimation (local) 46011530 46012576 454676 455722 NC_000014.9 scf7180000172755 99.43 True fake: scaffold gap size wrong estimation (local) 46014215 46015539 457969 459326 NC_000014.9 scf7180000172755 97.16 True fake: scaffold gap size wrong estimation (local) 46016149 46016925 459946 460721 NC_000014.9 scf7180000172755 97.81 True fake: scaffold gap size wrong estimation (local) 46017128 46028058 461055 471965 NC_000014.9 scf7180000172755 99.18 True fake: scaffold gap size wrong estimation (local) 46028250 46052435 472130 496595 NC_000014.9 scf7180000172755 98.84 True fake: scaffold gap size wrong estimation (local) 46052486 46055747 496641 499902 NC_000014.9 scf7180000172755 99.82 True fake: scaffold gap size wrong estimation (local) 46055748 46056850 500916 502018 NC_000014.9 scf7180000172755 99.82 True indel: indel (<= 5bp) 46056852 46058087 502019 503254 NC_000014.9 scf7180000172755 99.76 True indel: indel (<= 5bp) 46058090 46059785 503255 504950 NC_000014.9 scf7180000172755 99.88 True fake: scaffold gap size wrong estimation (local) 46060431 46065185 505516 510266 NC_000014.9 scf7180000172755 99.52 True fake: scaffold gap size wrong estimation (local) 46066570 46095496 511493 540543 NC_000014.9 scf7180000172755 98.81 True fake: scaffold gap size wrong estimation (local) 46099920 46100972 546756 547807 NC_000014.9 scf7180000172755 97.72 True fake: scaffold gap size wrong estimation (local) 46101440 46104084 548302 550946 NC_000014.9 scf7180000172755 99.81 True fake: scaffold gap size wrong estimation (local) 46104270 46107990 551129 554853 NC_000014.9 scf7180000172755 99.65 True fake: scaffold gap size wrong estimation (local) 46108091 46108720 555016 555645 NC_000014.9 scf7180000172755 99.52 True local misassembly 46109041 46112423 555646 559028 NC_000014.9 scf7180000172755 99.79 True fake: scaffold gap size wrong estimation (local) 46112680 46114292 559942 561554 NC_000014.9 scf7180000172755 99.88 True fake: scaffold gap size wrong estimation (local) 46115378 46149204 562561 596411 NC_000014.9 scf7180000172755 99.85 True fake: scaffold gap size wrong estimation (local) 46149354 46152071 596523 599240 NC_000014.9 scf7180000172755 99.93 True fake: scaffold gap size wrong estimation (local) 46153012 46158210 600050 605248 NC_000014.9 scf7180000172755 99.92 True fake: scaffold gap size wrong estimation (local) 46158388 46161133 605404 608149 NC_000014.9 scf7180000172755 99.75 True fake: scaffold gap size wrong estimation (local) 46165845 46177236 612458 624030 NC_000014.9 scf7180000172755 97.87 True fake: scaffold gap size wrong estimation (local) 46177379 46179012 624124 625755 NC_000014.9 scf7180000172755 99.76 True CONTIG scf7180000172755 625755 misassembled 44602144 44625426 25496 2214 NC_000014.9 scf7180000172756 99.96 True fake: scaffold gap size wrong estimation (local) 44585466 44600929 41919 26740 NC_000014.9 scf7180000172756 97.83 True fake: scaffold gap size wrong estimation (local) 44582221 44584067 45116 43270 NC_000014.9 scf7180000172756 99.34 True fake: scaffold gap size wrong estimation (local) 44581413 44582108 45926 45231 NC_000014.9 scf7180000172756 99.71 True fake: scaffold gap size wrong estimation (local) 44575361 44580887 51893 46367 NC_000014.9 scf7180000172756 99.8 True fake: scaffold gap size wrong estimation (local) 44573004 44575171 54237 52070 NC_000014.9 scf7180000172756 99.86 True fake: scaffold gap size wrong estimation (local) 44559389 44572747 67755 54398 NC_000014.9 scf7180000172756 99.87 True fake: scaffold gap size wrong estimation (local) 44557741 44559152 69378 67967 NC_000014.9 scf7180000172756 99.86 True fake: scaffold gap size wrong estimation (local) 44556363 44556915 70857 70304 NC_000014.9 scf7180000172756 97.65 True fake: scaffold gap size wrong estimation (local) 44542214 44549750 87862 80295 NC_000014.9 scf7180000172756 99.11 True fake: scaffold gap size wrong estimation (local) 44539522 44541607 90407 88322 NC_000014.9 scf7180000172756 99.95 True fake: scaffold gap size wrong estimation (local) 44534357 44539223 95487 90621 NC_000014.9 scf7180000172756 99.94 True local misassembly 44515508 44534257 114508 95782 NC_000014.9 scf7180000172756 99.55 True fake: scaffold gap size wrong estimation (local) 44514795 44515320 115108 114583 NC_000014.9 scf7180000172756 98.48 True fake: scaffold gap size wrong estimation (local) 44501072 44509361 129089 120721 NC_000014.9 scf7180000172756 97.48 True fake: scaffold gap size wrong estimation (local) 44498798 44500943 131345 129200 NC_000014.9 scf7180000172756 99.86 True fake: scaffold gap size wrong estimation (local) 44476606 44498541 153574 131535 NC_000014.9 scf7180000172756 99.5 True fake: scaffold gap size wrong estimation (local) 44461530 44471238 171136 161422 NC_000014.9 scf7180000172756 99.85 True fake: scaffold gap size wrong estimation (local) 44458837 44461007 173778 171608 NC_000014.9 scf7180000172756 99.86 True fake: scaffold gap size wrong estimation (local) 44445684 44458774 187042 173933 NC_000014.9 scf7180000172756 96.95 True fake: scaffold gap size wrong estimation (local) 44444353 44445486 188350 187217 NC_000014.9 scf7180000172756 99.82 True fake: scaffold gap size wrong estimation (local) 44441218 44444140 191345 188479 NC_000014.9 scf7180000172756 98.02 True fake: scaffold gap size wrong estimation (local) 44429540 44440620 203341 192292 NC_000014.9 scf7180000172756 99.69 True fake: scaffold gap size wrong estimation (local) 44423517 44429000 209533 203854 NC_000014.9 scf7180000172756 96.77 True indel: indel (> 5bp) 44408929 44423285 224081 209771 NC_000014.9 scf7180000172756 99.51 True fake: scaffold gap size wrong estimation (local) 44385853 44408789 247460 224203 NC_000014.9 scf7180000172756 95.99 True fake: scaffold gap size wrong estimation (local) 44377380 44385731 255932 247551 NC_000014.9 scf7180000172756 99.61 True fake: scaffold gap size wrong estimation (local) 44366622 44376448 266826 256984 NC_000014.9 scf7180000172756 99.91 True fake: scaffold gap size wrong estimation (local) 44359517 44366382 273843 266978 NC_000014.9 scf7180000172756 99.97 True fake: scaffold gap size wrong estimation (local) 44325110 44359442 308764 274047 NC_000014.9 scf7180000172756 98.81 True relocation, scaffold gap is present, inconsistency = 30945112 75304575 75305681 308785 309891 NC_000014.9 scf7180000172756 100.0 True fake: scaffold gap size wrong estimation (local) 75306972 75309187 311223 313438 NC_000014.9 scf7180000172756 99.86 True relocation, inconsistency = 39807332 35498771 35499639 314307 313439 NC_000014.9 scf7180000172756 99.89 True relocation, scaffold gap is present, inconsistency = -8822791 44319333 44321172 316536 314697 NC_000014.9 scf7180000172756 98.75 True local misassembly 44316520 44319183 319200 316537 NC_000014.9 scf7180000172756 99.96 True fake: scaffold gap size wrong estimation (local) 44315059 44316519 320923 319463 NC_000014.9 scf7180000172756 99.93 True fake: scaffold gap size wrong estimation (local) 44277492 44310959 358368 324915 NC_000014.9 scf7180000172756 99.82 True fake: scaffold gap size wrong estimation (local) 44268649 44277302 367178 358523 NC_000014.9 scf7180000172756 99.86 True fake: scaffold gap size wrong estimation (local) 44267253 44268449 368468 367272 NC_000014.9 scf7180000172756 100.0 True fake: scaffold gap size wrong estimation (local) 44246532 44266557 389073 369042 NC_000014.9 scf7180000172756 99.94 True fake: scaffold gap size wrong estimation (local) 44240920 44244806 394495 390609 NC_000014.9 scf7180000172756 99.97 True fake: scaffold gap size wrong estimation (local) 44225163 44240634 410212 394743 NC_000014.9 scf7180000172756 99.95 True fake: scaffold gap size wrong estimation (local) 44217821 44224940 417437 410346 NC_000014.9 scf7180000172756 99.55 True fake: scaffold gap size wrong estimation (local) 44213837 44217629 421271 417563 NC_000014.9 scf7180000172756 97.64 True fake: scaffold gap size wrong estimation (local) 44210983 44212697 424054 422340 NC_000014.9 scf7180000172756 99.83 True relocation, scaffold gap is present, inconsistency = -18073503 62283307 62284465 425233 424075 NC_000014.9 scf7180000172756 99.22 True fake: scaffold gap size wrong estimation (local) 62265176 62283034 443218 425360 NC_000014.9 scf7180000172756 99.87 True fake: scaffold gap size wrong estimation (local) 62255842 62264957 452837 443379 NC_000014.9 scf7180000172756 96.02 True fake: scaffold gap size wrong estimation (local) 62254642 62255599 453969 453012 NC_000014.9 scf7180000172756 99.79 True fake: scaffold gap size wrong estimation (local) 62236384 62254433 472221 454166 NC_000014.9 scf7180000172756 99.88 True fake: scaffold gap size wrong estimation (local) 62217871 62236242 491353 472356 NC_000014.9 scf7180000172756 97.0 True fake: scaffold gap size wrong estimation (local) 62204947 62217805 504243 491385 NC_000014.9 scf7180000172756 99.98 True fake: scaffold gap size wrong estimation (local) 62175176 62199235 535671 511858 NC_000014.9 scf7180000172756 98.81 True fake: scaffold gap size wrong estimation (local) 62162390 62173782 548269 536862 NC_000014.9 scf7180000172756 99.84 True fake: scaffold gap size wrong estimation (local) 62153900 62162241 556706 548359 NC_000014.9 scf7180000172756 99.38 True fake: scaffold gap size wrong estimation (local) 62089309 62153825 621557 556843 NC_000014.9 scf7180000172756 99.43 True fake: scaffold gap size wrong estimation (local) 62069065 62089163 641744 621651 NC_000014.9 scf7180000172756 99.41 True fake: scaffold gap size wrong estimation (local) 62051316 62068820 659461 641945 NC_000014.9 scf7180000172756 99.41 True relocation, inconsistency = 16237537 45796292 45813555 659685 676958 NC_000014.9 scf7180000172756 99.83 True fake: scaffold gap size wrong estimation (local) 45814339 45818115 677618 681394 NC_000014.9 scf7180000172756 99.95 True fake: scaffold gap size wrong estimation (local) 45818258 45823626 681763 687131 NC_000014.9 scf7180000172756 100.0 True local misassembly 45823905 45844048 687855 707472 NC_000014.9 scf7180000172756 96.95 True fake: scaffold gap size wrong estimation (local) 45845469 45854991 708777 718301 NC_000014.9 scf7180000172756 99.59 True fake: scaffold gap size wrong estimation (local) 45855713 45856502 719017 719806 NC_000014.9 scf7180000172756 99.24 True indel: indel (<= 5bp) 45856504 45857143 719807 720446 NC_000014.9 scf7180000172756 99.53 True indel: indel (<= 5bp) 45857144 45857678 720448 720982 NC_000014.9 scf7180000172756 97.01 True local misassembly 45857679 45859389 721726 723436 NC_000014.9 scf7180000172756 99.77 True fake: scaffold gap size wrong estimation (local) 45859390 45860745 723650 725005 NC_000014.9 scf7180000172756 99.78 True indel: indel (<= 5bp) 45860746 45861468 725007 725729 NC_000014.9 scf7180000172756 99.45 True fake: scaffold gap size wrong estimation (local) 45861707 45864951 725919 729163 NC_000014.9 scf7180000172756 99.78 True fake: scaffold gap size wrong estimation (local) 45866098 45867784 729899 731585 NC_000014.9 scf7180000172756 99.64 True fake: scaffold gap size wrong estimation (local) 45867836 45869664 732401 734229 NC_000014.9 scf7180000172756 99.73 True fake: scaffold gap size wrong estimation (local) 45869868 45871531 734523 736186 NC_000014.9 scf7180000172756 99.4 True fake: scaffold gap size wrong estimation (local) 45872132 45873773 736854 738464 NC_000014.9 scf7180000172756 96.21 True fake: scaffold gap size wrong estimation (local) 45874049 45883295 738726 748067 NC_000014.9 scf7180000172756 96.56 True fake: scaffold gap size wrong estimation (local) 45889173 45905171 755533 771548 NC_000014.9 scf7180000172756 99.85 True fake: scaffold gap size wrong estimation (local) 45905410 45908326 771705 774618 NC_000014.9 scf7180000172756 99.9 True fake: scaffold gap size wrong estimation (local) 45929066 45933575 798951 803517 NC_000014.9 scf7180000172756 99.07 True CONTIG scf7180000172756 803517 misassembled 101670895 101671913 329 1347 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 101673325 101674075 2955 3705 NC_000014.9 scf7180000172757 99.73 True fake: scaffold gap size wrong estimation (local) 101676320 101679467 5539 8707 NC_000014.9 scf7180000172757 99.87 True fake: scaffold gap size wrong estimation (local) 101679638 101680241 8758 9361 NC_000014.9 scf7180000172757 99.83 True fake: scaffold gap size wrong estimation (local) 101680490 101681185 9677 10372 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 101681487 101685041 10552 13973 NC_000014.9 scf7180000172757 95.61 True fake: scaffold gap size wrong estimation (local) 101685226 101686394 15848 17016 NC_000014.9 scf7180000172757 99.57 True fake: not a misassembly (possible transposable element) 30583598 30584700 17017 18119 NC_000014.9 scf7180000172757 99.91 True fake: not a misassembly (possible transposable element) 101687490 101689675 18533 20718 NC_000014.9 scf7180000172757 97.35 True fake: scaffold gap size wrong estimation (local) 101689676 101690216 20838 21378 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 101690217 101690882 21500 22165 NC_000014.9 scf7180000172757 99.55 True indel: indel (<= 5bp) 101690883 101692270 22167 23554 NC_000014.9 scf7180000172757 99.86 True fake: scaffold gap size wrong estimation (local) 101693672 101694584 24752 25664 NC_000014.9 scf7180000172757 99.67 True fake: scaffold gap size wrong estimation (local) 101694585 101697476 26054 28945 NC_000014.9 scf7180000172757 99.86 True relocation, scaffold gap is present, inconsistency = -40810354 60890153 60901449 31976 43213 NC_000014.9 scf7180000172757 99.08 True fake: scaffold gap size wrong estimation (local) 60901821 60903885 43544 45609 NC_000014.9 scf7180000172757 99.81 True fake: scaffold gap size wrong estimation (local) 60904134 60907286 45899 49061 NC_000014.9 scf7180000172757 99.68 True fake: scaffold gap size wrong estimation (local) 60914178 60917642 54727 58192 NC_000014.9 scf7180000172757 99.57 True fake: scaffold gap size wrong estimation (local) 60918451 60920471 58955 60977 NC_000014.9 scf7180000172757 99.8 True fake: scaffold gap size wrong estimation (local) 60920696 60934482 61111 74792 NC_000014.9 scf7180000172757 99.14 True fake: scaffold gap size wrong estimation (local) 60935236 60936259 75475 76498 NC_000014.9 scf7180000172757 99.71 True fake: scaffold gap size wrong estimation (local) 60940587 60941742 80929 82084 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 60942032 60946808 82329 87141 NC_000014.9 scf7180000172757 99.87 True fake: scaffold gap size wrong estimation (local) 60946877 60955402 87204 95766 NC_000014.9 scf7180000172757 99.8 True fake: scaffold gap size wrong estimation (local) 60953126 60953714 95833 96421 NC_000014.9 scf7180000172757 99.83 True fake: scaffold gap size wrong estimation (local) 60955602 60958612 96962 99973 NC_000014.9 scf7180000172757 99.5 True fake: scaffold gap size wrong estimation (local) 60958908 60961047 100248 102413 NC_000014.9 scf7180000172757 99.67 True fake: scaffold gap size wrong estimation (local) 60961234 60966180 102639 107484 NC_000014.9 scf7180000172757 97.87 True fake: scaffold gap size wrong estimation (local) 60966345 60994318 107608 135699 NC_000014.9 scf7180000172757 98.87 True fake: scaffold gap size wrong estimation (local) 60995010 60997217 136390 138597 NC_000014.9 scf7180000172757 99.86 True relocation, scaffold gap is present, inconsistency = -5742070 55256527 55258293 139977 141749 NC_000014.9 scf7180000172757 99.61 True fake: scaffold gap size wrong estimation (local) 55258868 55259888 142303 143323 NC_000014.9 scf7180000172757 99.9 True fake: scaffold gap size wrong estimation (local) 55261385 55264242 144650 147529 NC_000014.9 scf7180000172757 99.51 True fake: scaffold gap size wrong estimation (local) 55264366 55265689 147735 149058 NC_000014.9 scf7180000172757 99.85 True local misassembly 55265953 55266870 149059 149976 NC_000014.9 scf7180000172757 97.71 True fake: scaffold gap size wrong estimation (local) 55267044 55268609 150438 152020 NC_000014.9 scf7180000172757 99.87 True relocation, scaffold gap is present, inconsistency = 17137644 72406310 72409604 155371 152077 NC_000014.9 scf7180000172757 99.91 True fake: scaffold gap size wrong estimation (local) 72402840 72406131 159103 155812 NC_000014.9 scf7180000172757 99.21 True fake: scaffold gap size wrong estimation (local) 72400142 72402449 162055 159748 NC_000014.9 scf7180000172757 99.7 True relocation, inconsistency = 11359646 61014746 61039542 163009 187791 NC_000014.9 scf7180000172757 99.82 True fake: scaffold gap size wrong estimation (local) 61039651 61045685 188036 194037 NC_000014.9 scf7180000172757 99.15 True fake: scaffold gap size wrong estimation (local) 61045887 61055072 194196 203365 NC_000014.9 scf7180000172757 99.7 True fake: scaffold gap size wrong estimation (local) 61061122 61061972 209845 210734 NC_000014.9 scf7180000172757 97.24 True fake: scaffold gap size wrong estimation (local) 61062062 61078732 210805 227564 NC_000014.9 scf7180000172757 99.5 True fake: scaffold gap size wrong estimation (local) 61079178 61081608 228033 230463 NC_000014.9 scf7180000172757 99.96 True relocation, inconsistency = 20177481 81259090 81260272 231646 230464 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 81258262 81258855 232427 231834 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 81257063 81258071 233631 232623 NC_000014.9 scf7180000172757 98.02 True indel: indel (<= 5bp) 81255354 81257058 235336 233632 NC_000014.9 scf7180000172757 99.94 True indel: indel (<= 5bp) 81253970 81255352 236719 235337 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 81251915 81253859 239876 237932 NC_000014.9 scf7180000172757 98.82 True indel: indel (> 5bp) 81251192 81251846 240531 239877 NC_000014.9 scf7180000172757 99.85 True fake: not a misassembly (possible transposable element) 45331727 45333645 242571 240653 NC_000014.9 scf7180000172757 99.9 True fake: not a misassembly (possible transposable element) 81246207 81248557 245053 242704 NC_000014.9 scf7180000172757 99.79 True local misassembly 81249210 81250486 246777 245501 NC_000014.9 scf7180000172757 98.36 True fake: not a misassembly (possible transposable element) 45327436 45329653 249377 247160 NC_000014.9 scf7180000172757 99.82 True fake: not a misassembly (possible transposable element) 81245347 81246305 250360 249398 NC_000014.9 scf7180000172757 99.58 True fake: not a misassembly (possible transposable element) 45325893 45326418 250906 250381 NC_000014.9 scf7180000172757 96.2 True fake: not a misassembly (possible transposable element) 81242748 81244075 253400 252073 NC_000014.9 scf7180000172757 99.7 True fake: scaffold gap size wrong estimation (local) 81240892 81241589 254772 254075 NC_000014.9 scf7180000172757 99.28 True fake: scaffold gap size wrong estimation (local) 81240176 81240891 255957 255242 NC_000014.9 scf7180000172757 99.86 True relocation, scaffold gap is present, inconsistency = 20126872 61106105 61113253 256008 263160 NC_000014.9 scf7180000172757 99.9 True fake: not a misassembly (possible transposable element) 81236981 81239250 265485 263216 NC_000014.9 scf7180000172757 99.87 True fake: not a misassembly (possible transposable element) 61113370 61117787 265506 269922 NC_000014.9 scf7180000172757 99.75 True relocation, scaffold gap is present, inconsistency = 20110798 81229080 81236810 278140 270417 NC_000014.9 scf7180000172757 99.84 True fake: scaffold gap size wrong estimation (local) 81227248 81228526 279970 278692 NC_000014.9 scf7180000172757 100.0 True indel: stretch of mismatches 81226382 81227057 280866 280161 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 81224175 81226087 283048 281166 NC_000014.9 scf7180000172757 98.36 True fake: scaffold gap size wrong estimation (local) 81220595 81224055 286686 283197 NC_000014.9 scf7180000172757 99.73 True fake: scaffold gap size wrong estimation (local) 81214620 81220217 292564 286971 NC_000014.9 scf7180000172757 99.82 True fake: scaffold gap size wrong estimation (local) 81208086 81214402 298875 292793 NC_000014.9 scf7180000172757 95.71 True fake: scaffold gap size wrong estimation (local) 81207148 81208221 300744 299671 NC_000014.9 scf7180000172757 99.91 True indel: indel (> 5bp) 81201943 81207139 305941 300745 NC_000014.9 scf7180000172757 99.87 True fake: scaffold gap size wrong estimation (local) 81200881 81201942 308679 307618 NC_000014.9 scf7180000172757 97.46 True local misassembly 81199947 81200631 309364 308680 NC_000014.9 scf7180000172757 100.0 True indel: indel (<= 5bp) 81195639 81199945 313671 309365 NC_000014.9 scf7180000172757 99.95 True relocation, scaffold gap is present, inconsistency = 52989858 28194441 28205748 325247 313704 NC_000014.9 scf7180000172757 97.36 True relocation, scaffold gap is present, inconsistency = -53000563 81188779 81194983 331402 325268 NC_000014.9 scf7180000172757 98.53 True fake: scaffold gap size wrong estimation (local) 81181816 81188519 338293 331687 NC_000014.9 scf7180000172757 97.9 True fake: scaffold gap size wrong estimation (local) 81159967 81181637 359873 338407 NC_000014.9 scf7180000172757 98.78 True fake: not a misassembly (possible transposable element) 66676146 66676687 359874 360415 NC_000014.9 scf7180000172757 100.0 True fake: not a misassembly (possible transposable element) 81138423 81160882 382875 360436 NC_000014.9 scf7180000172757 99.07 True fake: scaffold gap size wrong estimation (local) 81131016 81138207 390217 383096 NC_000014.9 scf7180000172757 99.0 True fake: scaffold gap size wrong estimation (local) 81122252 81130730 398798 390309 NC_000014.9 scf7180000172757 99.79 True fake: scaffold gap size wrong estimation (local) 81120183 81122014 400909 399078 NC_000014.9 scf7180000172757 99.51 True fake: scaffold gap size wrong estimation (local) 81109322 81114133 411846 407034 NC_000014.9 scf7180000172757 99.65 True fake: scaffold gap size wrong estimation (local) 81102180 81109166 419060 412020 NC_000014.9 scf7180000172757 99.47 True fake: scaffold gap size wrong estimation (local) 81089256 81101910 431821 419279 NC_000014.9 scf7180000172757 99.01 True fake: scaffold gap size wrong estimation (local) 81080225 81088992 440828 432062 NC_000014.9 scf7180000172757 99.94 True fake: scaffold gap size wrong estimation (local) 81076063 81079861 444953 441155 NC_000014.9 scf7180000172757 99.97 True fake: scaffold gap size wrong estimation (local) 81073037 81075520 447936 445453 NC_000014.9 scf7180000172757 99.96 True fake: scaffold gap size wrong estimation (local) 81057330 81072800 463643 448121 NC_000014.9 scf7180000172757 99.75 True fake: scaffold gap size wrong estimation (local) 81055184 81057155 465771 463801 NC_000014.9 scf7180000172757 99.7 True indel: indel (<= 5bp) 81047920 81055051 473057 465903 NC_000014.9 scf7180000172757 99.78 True fake: scaffold gap size wrong estimation (local) 81039605 81047677 481468 473485 NC_000014.9 scf7180000172757 98.76 True fake: scaffold gap size wrong estimation (local) 81037122 81039135 483979 481972 NC_000014.9 scf7180000172757 99.15 True fake: scaffold gap size wrong estimation (local) 81027045 81036917 494052 484159 NC_000014.9 scf7180000172757 99.47 True fake: scaffold gap size wrong estimation (local) 81025188 81026832 495956 494312 NC_000014.9 scf7180000172757 99.94 True fake: scaffold gap size wrong estimation (local) 81022778 81024372 498389 496795 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 81019470 81020987 501683 500058 NC_000014.9 scf7180000172757 99.14 True fake: scaffold gap size wrong estimation (local) 81013393 81019269 507644 501781 NC_000014.9 scf7180000172757 99.64 True fake: scaffold gap size wrong estimation (local) 81008441 81011868 512423 508975 NC_000014.9 scf7180000172757 99.91 True fake: scaffold gap size wrong estimation (local) 81000206 81008188 520359 512612 NC_000014.9 scf7180000172757 96.8 True fake: scaffold gap size wrong estimation (local) 80995688 80999948 524837 520578 NC_000014.9 scf7180000172757 99.84 True fake: scaffold gap size wrong estimation (local) 80992273 80995369 528336 525021 NC_000014.9 scf7180000172757 97.03 True local misassembly 80990888 80992139 529588 528337 NC_000014.9 scf7180000172757 99.76 True fake: scaffold gap size wrong estimation (local) 80985231 80990704 535167 529694 NC_000014.9 scf7180000172757 99.87 True fake: scaffold gap size wrong estimation (local) 80976172 80984985 544205 535372 NC_000014.9 scf7180000172757 99.49 True fake: scaffold gap size wrong estimation (local) 80973426 80975929 546907 544404 NC_000014.9 scf7180000172757 99.84 True fake: scaffold gap size wrong estimation (local) 80954275 80973148 566346 547173 NC_000014.9 scf7180000172757 97.63 True fake: scaffold gap size wrong estimation (local) 80944891 80954019 575565 566612 NC_000014.9 scf7180000172757 97.91 True fake: scaffold gap size wrong estimation (local) 80938477 80943790 581871 576554 NC_000014.9 scf7180000172757 99.61 True fake: scaffold gap size wrong estimation (local) 80928265 80938257 591968 582004 NC_000014.9 scf7180000172757 99.3 True relocation, inconsistency = 42242470 38683942 38685794 591969 593821 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 38686236 38709508 594196 617292 NC_000014.9 scf7180000172757 99.18 True fake: scaffold gap size wrong estimation (local) 38709718 38713412 617488 621182 NC_000014.9 scf7180000172757 99.92 True fake: scaffold gap size wrong estimation (local) 38716444 38748117 624077 655932 NC_000014.9 scf7180000172757 98.98 True fake: scaffold gap size wrong estimation (local) 38748900 38755264 656713 663077 NC_000014.9 scf7180000172757 99.97 True fake: scaffold gap size wrong estimation (local) 38755729 38757145 663996 665412 NC_000014.9 scf7180000172757 99.93 True fake: scaffold gap size wrong estimation (local) 38757428 38765627 665759 673709 NC_000014.9 scf7180000172757 96.67 True fake: scaffold gap size wrong estimation (local) 38767679 38768267 675799 676389 NC_000014.9 scf7180000172757 97.12 True fake: scaffold gap size wrong estimation (local) 38768591 38783412 676712 691533 NC_000014.9 scf7180000172757 99.93 True fake: scaffold gap size wrong estimation (local) 38784307 38787814 692362 695877 NC_000014.9 scf7180000172757 99.91 True fake: scaffold gap size wrong estimation (local) 38788018 38797771 696023 705796 NC_000014.9 scf7180000172757 99.94 True fake: scaffold gap size wrong estimation (local) 38797855 38805564 705951 713544 NC_000014.9 scf7180000172757 98.37 True fake: scaffold gap size wrong estimation (local) 38805640 38807689 713752 715801 NC_000014.9 scf7180000172757 99.95 True indel: indel (> 5bp) 38807724 38809331 715802 717409 NC_000014.9 scf7180000172757 98.07 True fake: scaffold gap size wrong estimation (local) 38809332 38810406 717564 718638 NC_000014.9 scf7180000172757 99.81 True local misassembly 38810782 38812105 718804 720127 NC_000014.9 scf7180000172757 98.41 True fake: not a misassembly (possible transposable element) 52476886 52477484 720285 720883 NC_000014.9 scf7180000172757 99.84 True fake: not a misassembly (possible transposable element) 38812061 38814655 720884 723478 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 38814923 38821858 723658 730576 NC_000014.9 scf7180000172757 99.58 True fake: scaffold gap size wrong estimation (local) 38822027 38831338 730690 740150 NC_000014.9 scf7180000172757 98.56 True fake: scaffold gap size wrong estimation (local) 38831599 38834419 740319 743139 NC_000014.9 scf7180000172757 99.96 True fake: scaffold gap size wrong estimation (local) 38834597 38858038 743262 766771 NC_000014.9 scf7180000172757 98.78 True fake: scaffold gap size wrong estimation (local) 38859680 38860246 768111 768677 NC_000014.9 scf7180000172757 100.0 True relocation, scaffold gap is present, inconsistency = 27807697 66668246 66668889 768980 769623 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 66669365 66674120 770027 774708 NC_000014.9 scf7180000172757 98.42 True fake: scaffold gap size wrong estimation (local) 66674295 66683735 774883 784440 NC_000014.9 scf7180000172757 99.05 True fake: scaffold gap size wrong estimation (local) 66683950 66684894 784717 785661 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 66686872 66687504 787459 788091 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 66687825 66694912 788178 795288 NC_000014.9 scf7180000172757 98.39 True fake: scaffold gap size wrong estimation (local) 66695082 66703294 795411 803633 NC_000014.9 scf7180000172757 99.41 True relocation, scaffold gap is present, inconsistency = -12952930 53750899 53751423 804168 804692 NC_000014.9 scf7180000172757 99.64 True relocation, inconsistency = 25532515 28216564 28218383 806512 804693 NC_000014.9 scf7180000172757 100.0 True fake: scaffold gap size wrong estimation (local) 28213610 28216563 809869 806916 NC_000014.9 scf7180000172757 99.93 True fake: scaffold gap size wrong estimation (local) 28209904 28213386 813756 810201 NC_000014.9 scf7180000172757 98.08 True fake: scaffold gap size wrong estimation (local) 28207469 28209072 816265 814662 NC_000014.9 scf7180000172757 100.0 True CONTIG scf7180000172757 816345 misassembled 57152293 57152817 525 1 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 57145736 57150769 6901 2011 NC_000014.9 scf7180000172758 97.15 True fake: scaffold gap size wrong estimation (local) 57139597 57145468 12958 7087 NC_000014.9 scf7180000172758 99.98 True fake: scaffold gap size wrong estimation (local) 57137852 57138919 14674 13607 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 57111665 57112281 40998 40382 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 57084491 57100357 68779 53057 NC_000014.9 scf7180000172758 98.95 True fake: scaffold gap size wrong estimation (local) 57069762 57084246 83465 69022 NC_000014.9 scf7180000172758 99.7 True fake: scaffold gap size wrong estimation (local) 57055869 57069492 97139 83690 NC_000014.9 scf7180000172758 98.44 True indel: stretch of mismatches 57040390 57055851 112511 97157 NC_000014.9 scf7180000172758 99.02 True fake: scaffold gap size wrong estimation (local) 57037241 57040205 115747 112783 NC_000014.9 scf7180000172758 99.7 True relocation, inconsistency = 16860187 73900393 73901331 115748 116687 NC_000014.9 scf7180000172758 99.9 True fake: scaffold gap size wrong estimation (local) 73902321 73905915 117596 121240 NC_000014.9 scf7180000172758 99.44 True fake: scaffold gap size wrong estimation (local) 73906555 73910490 121966 125807 NC_000014.9 scf7180000172758 97.51 True fake: scaffold gap size wrong estimation (local) 73910869 73914253 126062 129475 NC_000014.9 scf7180000172758 99.76 True fake: scaffold gap size wrong estimation (local) 73916360 73917584 131577 132821 NC_000014.9 scf7180000172758 99.59 True fake: scaffold gap size wrong estimation (local) 73917762 73918892 133065 134188 NC_000014.9 scf7180000172758 99.37 True fake: scaffold gap size wrong estimation (local) 73919125 73924730 134431 140053 NC_000014.9 scf7180000172758 99.96 True fake: scaffold gap size wrong estimation (local) 73924925 73925462 140170 140707 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 73925679 73926511 140986 141818 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 73927293 73927843 142371 142921 NC_000014.9 scf7180000172758 96.37 True fake: scaffold gap size wrong estimation (local) 73928111 73934624 143171 149991 NC_000014.9 scf7180000172758 95.93 True fake: scaffold gap size wrong estimation (local) 73934866 73935372 150129 150635 NC_000014.9 scf7180000172758 99.8 True fake: scaffold gap size wrong estimation (local) 73935478 73938519 150823 153792 NC_000014.9 scf7180000172758 97.52 True fake: scaffold gap size wrong estimation (local) 73938731 73945599 154004 160861 NC_000014.9 scf7180000172758 99.65 True fake: scaffold gap size wrong estimation (local) 73945918 73947244 161229 162555 NC_000014.9 scf7180000172758 96.31 True local misassembly 73947360 73948183 162556 163379 NC_000014.9 scf7180000172758 97.33 True fake: scaffold gap size wrong estimation (local) 73948184 73948926 163614 164356 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 73949624 73951935 164995 167282 NC_000014.9 scf7180000172758 98.95 True fake: not a misassembly (possible transposable element) 102638616 102639518 167303 168203 NC_000014.9 scf7180000172758 99.34 True fake: not a misassembly (possible transposable element) 73952126 73952747 168296 168917 NC_000014.9 scf7180000172758 99.68 True fake: scaffold gap size wrong estimation (local) 73952920 73954590 168985 170655 NC_000014.9 scf7180000172758 99.94 True fake: scaffold gap size wrong estimation (local) 73955226 73956113 171376 172263 NC_000014.9 scf7180000172758 100.0 True local misassembly 73956297 73957136 172264 173103 NC_000014.9 scf7180000172758 97.62 True fake: scaffold gap size wrong estimation (local) 73957350 73959675 173437 175762 NC_000014.9 scf7180000172758 99.96 True fake: scaffold gap size wrong estimation (local) 73959844 73967600 175903 183567 NC_000014.9 scf7180000172758 98.74 True fake: scaffold gap size wrong estimation (local) 73968667 73970236 184699 186268 NC_000014.9 scf7180000172758 99.55 True fake: scaffold gap size wrong estimation (local) 73970474 73979501 186433 195152 NC_000014.9 scf7180000172758 95.94 True fake: scaffold gap size wrong estimation (local) 73980993 73981740 197414 198161 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 73982750 73983624 198816 199690 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 73984153 73984978 199973 200780 NC_000014.9 scf7180000172758 97.82 True fake: scaffold gap size wrong estimation (local) 73986071 73987003 202015 202947 NC_000014.9 scf7180000172758 100.0 True indel: indel (<= 5bp) 73987005 73988565 202948 204508 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 73989861 73991959 205884 207988 NC_000014.9 scf7180000172758 99.9 True fake: scaffold gap size wrong estimation (local) 73992786 73993915 208932 210061 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 73994732 73999443 210922 215710 NC_000014.9 scf7180000172758 99.16 True fake: scaffold gap size wrong estimation (local) 74000679 74001283 216880 217484 NC_000014.9 scf7180000172758 96.69 True fake: scaffold gap size wrong estimation (local) 74001701 74004063 217931 220293 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74004253 74005163 220606 221516 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74006545 74007322 222801 223578 NC_000014.9 scf7180000172758 99.74 True fake: scaffold gap size wrong estimation (local) 74008669 74009914 224881 226149 NC_000014.9 scf7180000172758 99.52 True fake: scaffold gap size wrong estimation (local) 74010457 74011668 227199 228410 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74012263 74014979 228719 231435 NC_000014.9 scf7180000172758 99.96 True indel: indel (> 5bp) 74015050 74016425 231436 232811 NC_000014.9 scf7180000172758 98.55 True fake: scaffold gap size wrong estimation (local) 74016514 74017194 233397 234077 NC_000014.9 scf7180000172758 99.56 True fake: scaffold gap size wrong estimation (local) 74018184 74020625 234709 237150 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74020706 74023653 237286 240186 NC_000014.9 scf7180000172758 98.36 True fake: scaffold gap size wrong estimation (local) 74023941 74024670 240526 241255 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74024741 74026125 241367 242751 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74027393 74028178 243878 244663 NC_000014.9 scf7180000172758 96.69 True fake: scaffold gap size wrong estimation (local) 74028179 74028706 244966 245493 NC_000014.9 scf7180000172758 95.45 True fake: scaffold gap size wrong estimation (local) 74028949 74029585 245619 246255 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74029689 74030533 246664 247508 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74031229 74031785 248083 248639 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74033919 74034962 250872 251915 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74037337 74037830 254048 254570 NC_000014.9 scf7180000172758 97.61 True fake: scaffold gap size wrong estimation (local) 74038803 74041806 255382 258269 NC_000014.9 scf7180000172758 96.05 True fake: scaffold gap size wrong estimation (local) 74042156 74042879 259262 259985 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74044716 74045478 261290 262052 NC_000014.9 scf7180000172758 99.21 True local misassembly 74045496 74046402 262419 263325 NC_000014.9 scf7180000172758 98.46 True fake: scaffold gap size wrong estimation (local) 74047587 74049024 264499 265936 NC_000014.9 scf7180000172758 99.79 True fake: scaffold gap size wrong estimation (local) 74049475 74050980 266089 267594 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74051379 74052491 267833 268945 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74055390 74056188 271695 272493 NC_000014.9 scf7180000172758 97.38 True local misassembly 74056356 74058120 272494 274704 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74059656 74060155 276125 276624 NC_000014.9 scf7180000172758 96.0 True fake: scaffold gap size wrong estimation (local) 74060156 74061042 276660 277546 NC_000014.9 scf7180000172758 99.77 True fake: scaffold gap size wrong estimation (local) 74061403 74061985 278309 278891 NC_000014.9 scf7180000172758 100.0 True local misassembly 74062378 74063200 278892 279714 NC_000014.9 scf7180000172758 99.76 True fake: scaffold gap size wrong estimation (local) 74063867 74068500 280687 285100 NC_000014.9 scf7180000172758 95.1 True fake: scaffold gap size wrong estimation (local) 74069519 74070268 286089 286839 NC_000014.9 scf7180000172758 99.73 True fake: scaffold gap size wrong estimation (local) 74070376 74073848 286950 290445 NC_000014.9 scf7180000172758 99.77 True fake: scaffold gap size wrong estimation (local) 74074508 74076402 290688 292798 NC_000014.9 scf7180000172758 96.2 True fake: scaffold gap size wrong estimation (local) 74076793 74078569 293058 294834 NC_000014.9 scf7180000172758 99.83 True fake: scaffold gap size wrong estimation (local) 74078809 74079330 294962 295483 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74079710 74082405 295927 298622 NC_000014.9 scf7180000172758 99.89 True fake: scaffold gap size wrong estimation (local) 74082641 74087210 298797 303365 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 74087420 74090026 303509 306138 NC_000014.9 scf7180000172758 99.81 True fake: scaffold gap size wrong estimation (local) 74090549 74091757 306687 307895 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74094253 74094778 309714 310239 NC_000014.9 scf7180000172758 95.82 True fake: scaffold gap size wrong estimation (local) 74096334 74097439 312060 313165 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74098802 74100532 314486 316216 NC_000014.9 scf7180000172758 99.71 True fake: scaffold gap size wrong estimation (local) 74100755 74101473 316599 317317 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74104134 74110479 319721 326080 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74112095 74113197 327599 328701 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74114007 74116122 329483 331600 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74116711 74119178 332176 334643 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74121756 74122660 336052 336956 NC_000014.9 scf7180000172758 100.0 True local misassembly 74120854 74121731 337028 337905 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74122891 74124748 339016 340900 NC_000014.9 scf7180000172758 99.03 True fake: scaffold gap size wrong estimation (local) 74126036 74130281 341731 345990 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74131537 74132647 347212 348322 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74132787 74137484 348449 353143 NC_000014.9 scf7180000172758 99.79 True fake: scaffold gap size wrong estimation (local) 74137761 74152764 353424 368486 NC_000014.9 scf7180000172758 99.81 True fake: scaffold gap size wrong estimation (local) 74152978 74157123 368626 372771 NC_000014.9 scf7180000172758 99.88 True fake: scaffold gap size wrong estimation (local) 74157460 74158317 373020 373890 NC_000014.9 scf7180000172758 98.94 True fake: scaffold gap size wrong estimation (local) 74158721 74159573 374336 375188 NC_000014.9 scf7180000172758 99.88 True fake: scaffold gap size wrong estimation (local) 74159771 74161271 375300 376800 NC_000014.9 scf7180000172758 99.93 True fake: scaffold gap size wrong estimation (local) 74161385 74163999 377001 379628 NC_000014.9 scf7180000172758 98.7 True fake: scaffold gap size wrong estimation (local) 74164254 74165927 379956 381653 NC_000014.9 scf7180000172758 99.4 True fake: scaffold gap size wrong estimation (local) 74166164 74168417 381804 384063 NC_000014.9 scf7180000172758 99.51 True fake: scaffold gap size wrong estimation (local) 74168650 74174992 384243 390658 NC_000014.9 scf7180000172758 98.77 True fake: scaffold gap size wrong estimation (local) 74175220 74175729 390739 391248 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74176387 74177060 392108 392781 NC_000014.9 scf7180000172758 99.85 True fake: scaffold gap size wrong estimation (local) 74177230 74177901 392889 393560 NC_000014.9 scf7180000172758 99.85 True indel: indel (> 5bp) 74177975 74178649 393561 394235 NC_000014.9 scf7180000172758 97.04 True fake: scaffold gap size wrong estimation (local) 74179680 74180273 395364 395957 NC_000014.9 scf7180000172758 99.83 True fake: scaffold gap size wrong estimation (local) 74180502 74181107 396097 396702 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74182203 74183124 397909 398830 NC_000014.9 scf7180000172758 99.57 True local misassembly 74183345 74184198 398831 399684 NC_000014.9 scf7180000172758 97.66 True fake: scaffold gap size wrong estimation (local) 74184299 74185312 400044 401057 NC_000014.9 scf7180000172758 99.9 True fake: scaffold gap size wrong estimation (local) 74185550 74191635 401226 407307 NC_000014.9 scf7180000172758 99.29 True fake: scaffold gap size wrong estimation (local) 74192566 74201839 408151 417565 NC_000014.9 scf7180000172758 99.68 True fake: scaffold gap size wrong estimation (local) 74202050 74205630 417737 421317 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74206607 74210223 422233 425850 NC_000014.9 scf7180000172758 99.97 True fake: scaffold gap size wrong estimation (local) 74210447 74211226 426041 426820 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74211349 74215071 426923 430683 NC_000014.9 scf7180000172758 99.65 True fake: scaffold gap size wrong estimation (local) 74215317 74217408 430892 432956 NC_000014.9 scf7180000172758 98.07 True fake: scaffold gap size wrong estimation (local) 74217556 74227072 433114 442594 NC_000014.9 scf7180000172758 99.2 True fake: scaffold gap size wrong estimation (local) 74227233 74231423 442740 446927 NC_000014.9 scf7180000172758 99.76 True fake: scaffold gap size wrong estimation (local) 74232820 74233768 448287 449235 NC_000014.9 scf7180000172758 99.89 True fake: scaffold gap size wrong estimation (local) 74233865 74235992 449435 451562 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74236379 74236936 451920 452477 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74237180 74244912 452740 460481 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74244993 74250793 460756 466565 NC_000014.9 scf7180000172758 99.46 True fake: scaffold gap size wrong estimation (local) 74251428 74252421 467171 468164 NC_000014.9 scf7180000172758 99.9 True fake: scaffold gap size wrong estimation (local) 74253035 74253737 468446 469148 NC_000014.9 scf7180000172758 97.01 True fake: scaffold gap size wrong estimation (local) 74255041 74256690 470667 472285 NC_000014.9 scf7180000172758 98.04 True fake: scaffold gap size wrong estimation (local) 74256955 74262861 472504 478428 NC_000014.9 scf7180000172758 99.8 True fake: scaffold gap size wrong estimation (local) 74262981 74268855 478560 484682 NC_000014.9 scf7180000172758 95.67 True fake: scaffold gap size wrong estimation (local) 74273270 74274107 488827 489664 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74276372 74277076 491710 492414 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74279146 74279844 494292 494990 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74280675 74281954 496042 497321 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74282016 74282559 497453 497996 NC_000014.9 scf7180000172758 99.63 True fake: scaffold gap size wrong estimation (local) 74283111 74283899 498670 499458 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74284070 74294070 499532 509492 NC_000014.9 scf7180000172758 99.16 True fake: scaffold gap size wrong estimation (local) 74294188 74298337 509513 513708 NC_000014.9 scf7180000172758 99.69 True fake: scaffold gap size wrong estimation (local) 74298534 74299803 513869 515138 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74300065 74301111 515365 516419 NC_000014.9 scf7180000172758 99.81 True fake: scaffold gap size wrong estimation (local) 74301323 74304259 516598 519538 NC_000014.9 scf7180000172758 99.97 True fake: scaffold gap size wrong estimation (local) 74304420 74305187 519694 520461 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74306192 74307142 521434 522430 NC_000014.9 scf7180000172758 99.68 True fake: scaffold gap size wrong estimation (local) 74307941 74308586 523216 523861 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74308700 74310192 524003 525495 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 74310719 74311491 526028 526800 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74312010 74312583 527179 527752 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74313026 74314400 528252 529626 NC_000014.9 scf7180000172758 99.93 True fake: scaffold gap size wrong estimation (local) 74314524 74316325 529751 531552 NC_000014.9 scf7180000172758 99.94 True fake: scaffold gap size wrong estimation (local) 74318936 74320089 534189 535342 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74320915 74321530 536150 536765 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74323483 74324145 538903 539565 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74324906 74327830 540040 542966 NC_000014.9 scf7180000172758 99.86 True fake: scaffold gap size wrong estimation (local) 74327994 74328797 543187 543989 NC_000014.9 scf7180000172758 99.88 True fake: scaffold gap size wrong estimation (local) 74331579 74332493 547244 548150 NC_000014.9 scf7180000172758 98.99 True fake: scaffold gap size wrong estimation (local) 74333826 74335977 549023 551153 NC_000014.9 scf7180000172758 98.64 True fake: scaffold gap size wrong estimation (local) 74336352 74340002 551521 555270 NC_000014.9 scf7180000172758 98.21 True fake: scaffold gap size wrong estimation (local) 74340994 74341633 556057 556696 NC_000014.9 scf7180000172758 96.88 True fake: scaffold gap size wrong estimation (local) 74341740 74343866 556888 559131 NC_000014.9 scf7180000172758 99.76 True fake: scaffold gap size wrong estimation (local) 74344751 74345347 559959 560555 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74345919 74351960 561101 567150 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 74352445 74353040 567435 568030 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74353250 74353767 568531 569048 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74355143 74363501 570248 578662 NC_000014.9 scf7180000172758 99.53 True fake: scaffold gap size wrong estimation (local) 74363630 74366320 578833 581587 NC_000014.9 scf7180000172758 98.77 True fake: scaffold gap size wrong estimation (local) 74366648 74367196 581830 582378 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74367703 74370267 582843 585407 NC_000014.9 scf7180000172758 99.77 True fake: scaffold gap size wrong estimation (local) 74370511 74371578 585646 586713 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74371822 74372535 586933 587646 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74373046 74374974 588173 590101 NC_000014.9 scf7180000172758 99.79 True fake: scaffold gap size wrong estimation (local) 74375072 74376821 590122 592055 NC_000014.9 scf7180000172758 96.44 True fake: scaffold gap size wrong estimation (local) 74377636 74378769 593037 594170 NC_000014.9 scf7180000172758 99.91 True fake: scaffold gap size wrong estimation (local) 74380085 74381397 595533 596845 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74383249 74384424 598867 600029 NC_000014.9 scf7180000172758 98.79 True fake: scaffold gap size wrong estimation (local) 74385617 74390718 601333 606463 NC_000014.9 scf7180000172758 95.65 True fake: scaffold gap size wrong estimation (local) 74391040 74393698 606821 609494 NC_000014.9 scf7180000172758 99.96 True fake: scaffold gap size wrong estimation (local) 74393793 74434842 609608 650566 NC_000014.9 scf7180000172758 99.36 True fake: scaffold gap size wrong estimation (local) 74434943 74436250 650609 651983 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74436866 74438999 652439 654572 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74439125 74439627 654929 655431 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74440580 74444188 656135 659743 NC_000014.9 scf7180000172758 99.97 True local misassembly 74444325 74445551 659744 661065 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74445742 74449243 661188 664711 NC_000014.9 scf7180000172758 97.94 True fake: scaffold gap size wrong estimation (local) 74449620 74451740 665042 667162 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74452014 74453141 667375 668539 NC_000014.9 scf7180000172758 99.82 True fake: scaffold gap size wrong estimation (local) 74453386 74455412 668823 670849 NC_000014.9 scf7180000172758 99.95 True fake: scaffold gap size wrong estimation (local) 74455589 74457943 671042 673396 NC_000014.9 scf7180000172758 99.96 True fake: scaffold gap size wrong estimation (local) 74459280 74460705 674864 676289 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74460862 74461957 676830 677925 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74462274 74469290 679221 686554 NC_000014.9 scf7180000172758 95.9 True fake: scaffold gap size wrong estimation (local) 74469503 74488457 686667 705358 NC_000014.9 scf7180000172758 98.25 True fake: scaffold gap size wrong estimation (local) 74488700 74491102 705549 707951 NC_000014.9 scf7180000172758 99.92 True fake: scaffold gap size wrong estimation (local) 74491300 74496931 708189 713742 NC_000014.9 scf7180000172758 98.55 True fake: scaffold gap size wrong estimation (local) 74497121 74513572 713914 730368 NC_000014.9 scf7180000172758 99.89 True fake: scaffold gap size wrong estimation (local) 74513808 74515270 730584 732046 NC_000014.9 scf7180000172758 99.66 True fake: scaffold gap size wrong estimation (local) 74515530 74520560 732310 737354 NC_000014.9 scf7180000172758 99.48 True fake: scaffold gap size wrong estimation (local) 74520806 74521424 737565 738183 NC_000014.9 scf7180000172758 99.84 True indel: indel (<= 5bp) 74521430 74532405 738184 749159 NC_000014.9 scf7180000172758 99.87 True fake: scaffold gap size wrong estimation (local) 74532406 74536754 749654 754002 NC_000014.9 scf7180000172758 100.0 True fake: scaffold gap size wrong estimation (local) 74536755 74537879 754484 755608 NC_000014.9 scf7180000172758 99.11 True indel: indel (> 5bp) 74538005 74540539 755728 758262 NC_000014.9 scf7180000172758 99.8 True fake: scaffold gap size wrong estimation (local) 74540947 74543280 758737 761096 NC_000014.9 scf7180000172758 98.76 True fake: scaffold gap size wrong estimation (local) 74543397 74556626 761170 774392 NC_000014.9 scf7180000172758 99.8 True fake: scaffold gap size wrong estimation (local) 74557238 74561084 774957 778806 NC_000014.9 scf7180000172758 99.84 True fake: scaffold gap size wrong estimation (local) 74561232 74561988 779010 779766 NC_000014.9 scf7180000172758 100.0 True local misassembly 74562169 74564028 779767 781626 NC_000014.9 scf7180000172758 98.82 True fake: scaffold gap size wrong estimation (local) 74564649 74569854 782258 787463 NC_000014.9 scf7180000172758 99.83 True CONTIG scf7180000172758 787463 misassembled 20225699 20230694 5012 17 NC_000014.9 scf7180000172759 99.7 True fake: scaffold gap size wrong estimation (local) 20221972 20225328 8641 5300 NC_000014.9 scf7180000172759 99.19 True fake: scaffold gap size wrong estimation (local) 20220601 20221339 9942 9204 NC_000014.9 scf7180000172759 99.86 True fake: scaffold gap size wrong estimation (local) 20217725 20220381 12853 10133 NC_000014.9 scf7180000172759 99.54 True fake: scaffold gap size wrong estimation (local) 20213550 20217513 17100 12936 NC_000014.9 scf7180000172759 95.44 True fake: scaffold gap size wrong estimation (local) 20211435 20212326 19040 18160 NC_000014.9 scf7180000172759 98.28 True indel: indel (> 5bp) 20208960 20211290 21552 19195 NC_000014.9 scf7180000172759 99.62 True fake: scaffold gap size wrong estimation (local) 20203253 20208816 27200 21618 NC_000014.9 scf7180000172759 99.84 True fake: scaffold gap size wrong estimation (local) 20202298 20202815 28073 27556 NC_000014.9 scf7180000172759 95.95 True local misassembly 20201501 20202297 29012 28216 NC_000014.9 scf7180000172759 99.62 True fake: scaffold gap size wrong estimation (local) 20198733 20201210 31663 29177 NC_000014.9 scf7180000172759 99.88 True fake: scaffold gap size wrong estimation (local) 20189043 20198521 41835 32317 NC_000014.9 scf7180000172759 99.69 True fake: scaffold gap size wrong estimation (local) 20177413 20188985 53642 41892 NC_000014.9 scf7180000172759 98.45 True fake: scaffold gap size wrong estimation (local) 20174764 20177140 56084 53708 NC_000014.9 scf7180000172759 99.83 True fake: scaffold gap size wrong estimation (local) 20158622 20174107 72160 56687 NC_000014.9 scf7180000172759 99.31 True fake: scaffold gap size wrong estimation (local) 20153530 20158308 77278 72418 NC_000014.9 scf7180000172759 97.99 True fake: scaffold gap size wrong estimation (local) 20146771 20151618 83725 78878 NC_000014.9 scf7180000172759 99.86 True fake: scaffold gap size wrong estimation (local) 20142353 20146540 88184 83832 NC_000014.9 scf7180000172759 96.65 True fake: scaffold gap size wrong estimation (local) 20133355 20142147 97542 88298 NC_000014.9 scf7180000172759 95.48 True fake: scaffold gap size wrong estimation (local) 20131173 20132996 99853 98030 NC_000014.9 scf7180000172759 99.95 True fake: not a misassembly (possible transposable element) 45863595 45865986 102572 104963 NC_000014.9 scf7180000172759 99.79 True fake: not a misassembly (possible transposable element) 20109629 20128002 123337 104964 NC_000014.9 scf7180000172759 99.91 True fake: scaffold gap size wrong estimation (local) 20096393 20104037 137402 129742 NC_000014.9 scf7180000172759 99.88 True fake: scaffold gap size wrong estimation (local) 20088324 20096277 145918 137544 NC_000014.9 scf7180000172759 95.11 True fake: scaffold gap size wrong estimation (local) 20085612 20086320 148292 147584 NC_000014.9 scf7180000172759 100.0 True fake: scaffold gap size wrong estimation (local) 20083409 20084563 150437 149283 NC_000014.9 scf7180000172759 99.83 True fake: scaffold gap size wrong estimation (local) 20081355 20082461 152489 151383 NC_000014.9 scf7180000172759 99.91 True fake: scaffold gap size wrong estimation (local) 20079109 20080627 154875 153357 NC_000014.9 scf7180000172759 99.34 True fake: scaffold gap size wrong estimation (local) 20076328 20078364 157557 155521 NC_000014.9 scf7180000172759 99.8 True fake: scaffold gap size wrong estimation (local) 20071880 20076327 163024 158577 NC_000014.9 scf7180000172759 98.97 True fake: scaffold gap size wrong estimation (local) 20067201 20071363 167725 163564 NC_000014.9 scf7180000172759 99.71 True fake: scaffold gap size wrong estimation (local) 20041794 20066652 193182 168266 NC_000014.9 scf7180000172759 99.03 True fake: scaffold gap size wrong estimation (local) 20027300 20037321 207879 197775 NC_000014.9 scf7180000172759 99.02 True fake: scaffold gap size wrong estimation (local) 19995309 20027121 240405 208227 NC_000014.9 scf7180000172759 95.56 True fake: scaffold gap size wrong estimation (local) 19988072 19995150 247692 240515 NC_000014.9 scf7180000172759 98.7 True fake: scaffold gap size wrong estimation (local) 19981129 19987757 254535 247879 NC_000014.9 scf7180000172759 99.74 True indel: indel (> 5bp) 19965757 19980661 269939 255028 NC_000014.9 scf7180000172759 99.81 True fake: scaffold gap size wrong estimation (local) 19964279 19965097 271483 270665 NC_000014.9 scf7180000172759 99.88 True fake: scaffold gap size wrong estimation (local) 19960178 19962657 275559 273080 NC_000014.9 scf7180000172759 99.88 True fake: scaffold gap size wrong estimation (local) 19947376 19959897 288330 275809 NC_000014.9 scf7180000172759 99.84 True fake: scaffold gap size wrong estimation (local) 19934907 19947114 301020 288465 NC_000014.9 scf7180000172759 97.09 True fake: scaffold gap size wrong estimation (local) 19914768 19934704 320920 301225 NC_000014.9 scf7180000172759 98.55 True fake: scaffold gap size wrong estimation (local) 19913089 19913596 322484 321976 NC_000014.9 scf7180000172759 99.41 True fake: scaffold gap size wrong estimation (local) 19898679 19912222 337119 323452 NC_000014.9 scf7180000172759 97.92 True fake: scaffold gap size wrong estimation (local) 19891680 19898213 344225 337472 NC_000014.9 scf7180000172759 96.87 True fake: scaffold gap size wrong estimation (local) 19889507 19891411 346217 344315 NC_000014.9 scf7180000172759 99.37 True fake: scaffold gap size wrong estimation (local) 19887068 19889373 348640 346335 NC_000014.9 scf7180000172759 99.61 True fake: scaffold gap size wrong estimation (local) 19886520 19887067 349402 348855 NC_000014.9 scf7180000172759 99.82 True fake: scaffold gap size wrong estimation (local) 19884436 19886519 351750 349667 NC_000014.9 scf7180000172759 98.18 True indel: indel (> 5bp) 19882994 19884378 353135 351751 NC_000014.9 scf7180000172759 99.86 True fake: scaffold gap size wrong estimation (local) 19872716 19882842 363362 353233 NC_000014.9 scf7180000172759 99.77 True fake: scaffold gap size wrong estimation (local) 19866747 19872299 369428 363772 NC_000014.9 scf7180000172759 99.89 True fake: scaffold gap size wrong estimation (local) 19862198 19866101 373786 369883 NC_000014.9 scf7180000172759 99.72 True fake: scaffold gap size wrong estimation (local) 19860596 19861641 375343 374298 NC_000014.9 scf7180000172759 99.43 True fake: scaffold gap size wrong estimation (local) 19856739 19860595 379482 375626 NC_000014.9 scf7180000172759 99.79 True fake: scaffold gap size wrong estimation (local) 19845782 19855052 390848 381224 NC_000014.9 scf7180000172759 95.7 True fake: scaffold gap size wrong estimation (local) 19820310 19845612 417072 391029 NC_000014.9 scf7180000172759 96.36 True fake: scaffold gap size wrong estimation (local) 19819246 19820140 418112 417218 NC_000014.9 scf7180000172759 99.55 True fake: scaffold gap size wrong estimation (local) 19818071 19818806 419416 418680 NC_000014.9 scf7180000172759 99.32 True fake: scaffold gap size wrong estimation (local) 19815847 19816771 422223 421299 NC_000014.9 scf7180000172759 99.68 True fake: scaffold gap size wrong estimation (local) 19812632 19814966 425383 423020 NC_000014.9 scf7180000172759 99.53 True fake: scaffold gap size wrong estimation (local) 19811503 19812261 426484 425726 NC_000014.9 scf7180000172759 99.87 True fake: scaffold gap size wrong estimation (local) 19803099 19811281 434851 426668 NC_000014.9 scf7180000172759 99.91 True fake: scaffold gap size wrong estimation (local) 19787412 19802701 450384 435164 NC_000014.9 scf7180000172759 99.34 True fake: scaffold gap size wrong estimation (local) 19786211 19787244 451633 450600 NC_000014.9 scf7180000172759 99.9 True fake: scaffold gap size wrong estimation (local) 19750250 19786010 487503 451789 NC_000014.9 scf7180000172759 99.67 True fake: scaffold gap size wrong estimation (local) 19739452 19749440 498621 488238 NC_000014.9 scf7180000172759 96.48 True fake: scaffold gap size wrong estimation (local) 19737583 19739094 500237 498726 NC_000014.9 scf7180000172759 99.93 True fake: scaffold gap size wrong estimation (local) 19722420 19736996 515317 500741 NC_000014.9 scf7180000172759 99.77 True relocation, inconsistency = 546559 19174565 19175860 515318 516613 NC_000014.9 scf7180000172759 98.56 True CONTIG scf7180000172759 516613 misassembled 34396859 34397416 359 916 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 34397600 34398815 3171 4386 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 34400453 34401041 5435 6023 NC_000014.9 scf7180000172760 100.0 True local misassembly 34401266 34401859 6024 6617 NC_000014.9 scf7180000172760 96.63 True relocation, scaffold gap is present, inconsistency = 20515404 54917396 54918071 6750 7424 NC_000014.9 scf7180000172760 99.41 True fake: scaffold gap size wrong estimation (local) 54919867 54921032 9196 10361 NC_000014.9 scf7180000172760 99.83 True fake: scaffold gap size wrong estimation (local) 54922324 54923738 11712 13126 NC_000014.9 scf7180000172760 99.93 True fake: scaffold gap size wrong estimation (local) 54925158 54925819 15046 15707 NC_000014.9 scf7180000172760 99.55 True fake: scaffold gap size wrong estimation (local) 54927060 54927923 16658 17521 NC_000014.9 scf7180000172760 100.0 True local misassembly 54928092 54929390 17522 18820 NC_000014.9 scf7180000172760 98.38 True fake: scaffold gap size wrong estimation (local) 54929484 54930156 18946 19618 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 54930390 54932515 19798 21923 NC_000014.9 scf7180000172760 99.95 True fake: scaffold gap size wrong estimation (local) 54932764 54933713 22173 23122 NC_000014.9 scf7180000172760 99.89 True fake: scaffold gap size wrong estimation (local) 54933748 54944489 23263 33694 NC_000014.9 scf7180000172760 96.93 True fake: not a misassembly (possible transposable element) 29772438 29773418 33715 34695 NC_000014.9 scf7180000172760 99.8 True fake: not a misassembly (possible transposable element) 54944818 54946928 34848 36937 NC_000014.9 scf7180000172760 98.95 True relocation, scaffold gap is present, inconsistency = -25173492 29773457 29775313 36958 38814 NC_000014.9 scf7180000172760 100.0 True relocation, scaffold gap is present, inconsistency = 4655339 34432723 34433707 40885 41869 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 34433889 34435632 42634 44377 NC_000014.9 scf7180000172760 99.83 True fake: scaffold gap size wrong estimation (local) 34435901 34439516 44515 48130 NC_000014.9 scf7180000172760 99.97 True relocation, scaffold gap is present, inconsistency = 20512429 54954217 54955885 50402 52070 NC_000014.9 scf7180000172760 99.88 True fake: scaffold gap size wrong estimation (local) 54955938 54960267 52232 56604 NC_000014.9 scf7180000172760 95.31 True fake: scaffold gap size wrong estimation (local) 54960774 54963557 57052 59860 NC_000014.9 scf7180000172760 99.78 True fake: scaffold gap size wrong estimation (local) 54963804 54964538 60253 60987 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 54966340 54968498 62603 64761 NC_000014.9 scf7180000172760 98.98 True fake: scaffold gap size wrong estimation (local) 54969261 54969910 64782 65430 NC_000014.9 scf7180000172760 99.69 True fake: scaffold gap size wrong estimation (local) 54969985 54970623 65534 66172 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 54972601 54975457 68144 70992 NC_000014.9 scf7180000172760 99.11 True fake: scaffold gap size wrong estimation (local) 54975540 54980605 71092 76178 NC_000014.9 scf7180000172760 99.68 True fake: scaffold gap size wrong estimation (local) 54982252 54982952 77789 78489 NC_000014.9 scf7180000172760 99.71 True fake: scaffold gap size wrong estimation (local) 54982953 54983454 78680 79181 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 54983787 54990322 79469 86019 NC_000014.9 scf7180000172760 99.69 True fake: scaffold gap size wrong estimation (local) 54990588 54994594 86183 90255 NC_000014.9 scf7180000172760 99.9 True fake: scaffold gap size wrong estimation (local) 54995293 54996843 91006 92562 NC_000014.9 scf7180000172760 99.55 True fake: scaffold gap size wrong estimation (local) 54997153 54997665 92817 93329 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 54998398 55007053 93998 102558 NC_000014.9 scf7180000172760 98.71 True fake: scaffold gap size wrong estimation (local) 55007265 55008852 102717 104304 NC_000014.9 scf7180000172760 99.75 True fake: scaffold gap size wrong estimation (local) 55009055 55009647 104419 105011 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 55010065 55011280 105487 106702 NC_000014.9 scf7180000172760 98.36 True fake: scaffold gap size wrong estimation (local) 55011415 55015716 106724 111205 NC_000014.9 scf7180000172760 97.18 True fake: scaffold gap size wrong estimation (local) 55015970 55021487 111336 116835 NC_000014.9 scf7180000172760 99.62 True fake: scaffold gap size wrong estimation (local) 55021602 55032864 116929 128373 NC_000014.9 scf7180000172760 98.49 True fake: scaffold gap size wrong estimation (local) 55033041 55033966 128561 129486 NC_000014.9 scf7180000172760 99.68 True fake: scaffold gap size wrong estimation (local) 55034049 55034619 129591 130161 NC_000014.9 scf7180000172760 99.65 True fake: scaffold gap size wrong estimation (local) 55035102 55036427 130581 131889 NC_000014.9 scf7180000172760 98.64 True fake: scaffold gap size wrong estimation (local) 55037765 55039262 133163 134660 NC_000014.9 scf7180000172760 99.87 True fake: scaffold gap size wrong estimation (local) 55039263 55039792 135225 135754 NC_000014.9 scf7180000172760 99.25 True fake: scaffold gap size wrong estimation (local) 55039813 55040540 135807 136534 NC_000014.9 scf7180000172760 99.04 True fake: scaffold gap size wrong estimation (local) 55041996 55053967 137929 149862 NC_000014.9 scf7180000172760 99.45 True fake: scaffold gap size wrong estimation (local) 55054220 55055732 150163 151675 NC_000014.9 scf7180000172760 100.0 True local misassembly 55053027 55054194 151726 152893 NC_000014.9 scf7180000172760 99.91 True fake: scaffold gap size wrong estimation (local) 55055745 55056722 152922 153899 NC_000014.9 scf7180000172760 99.69 True fake: scaffold gap size wrong estimation (local) 55057692 55058953 154870 156131 NC_000014.9 scf7180000172760 98.18 True fake: scaffold gap size wrong estimation (local) 55059227 55060163 156969 157905 NC_000014.9 scf7180000172760 99.04 True local misassembly 55060425 55064014 157906 161495 NC_000014.9 scf7180000172760 99.33 True fake: scaffold gap size wrong estimation (local) 55064275 55067014 161712 164453 NC_000014.9 scf7180000172760 99.74 True fake: scaffold gap size wrong estimation (local) 55067221 55072875 164537 170355 NC_000014.9 scf7180000172760 97.75 True fake: scaffold gap size wrong estimation (local) 55073353 55074273 170727 171647 NC_000014.9 scf7180000172760 99.78 True fake: scaffold gap size wrong estimation (local) 55074274 55075272 171942 172940 NC_000014.9 scf7180000172760 99.9 True fake: scaffold gap size wrong estimation (local) 55075312 55076302 172999 173989 NC_000014.9 scf7180000172760 99.19 True fake: scaffold gap size wrong estimation (local) 55076923 55078506 174538 176121 NC_000014.9 scf7180000172760 99.94 True fake: scaffold gap size wrong estimation (local) 55078841 55079717 176447 177323 NC_000014.9 scf7180000172760 99.89 True fake: scaffold gap size wrong estimation (local) 55080443 55081003 178071 178631 NC_000014.9 scf7180000172760 96.26 True fake: scaffold gap size wrong estimation (local) 55081004 55083631 178645 181272 NC_000014.9 scf7180000172760 99.54 True fake: scaffold gap size wrong estimation (local) 55083948 55085716 182344 184112 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 55086687 55087408 185252 185973 NC_000014.9 scf7180000172760 99.86 True local misassembly 55087557 55088112 185974 186529 NC_000014.9 scf7180000172760 96.4 True local misassembly 55088223 55088934 186530 187241 NC_000014.9 scf7180000172760 96.91 True fake: not a misassembly (possible transposable element) 47935009 47936386 187328 188705 NC_000014.9 scf7180000172760 100.0 True fake: not a misassembly (possible transposable element) 55089930 55091385 188726 190181 NC_000014.9 scf7180000172760 99.93 True relocation, inconsistency = -7154006 47937500 47940308 190302 193110 NC_000014.9 scf7180000172760 99.82 True relocation, scaffold gap is present, inconsistency = 38872266 86812595 86813389 193925 193131 NC_000014.9 scf7180000172760 99.75 True relocation, scaffold gap is present, inconsistency = 20909467 65898134 65900330 196723 198919 NC_000014.9 scf7180000172760 99.91 True fake: scaffold gap size wrong estimation (local) 65900130 65923017 199359 222279 NC_000014.9 scf7180000172760 99.09 True fake: scaffold gap size wrong estimation (local) 65923406 65924585 222594 223773 NC_000014.9 scf7180000172760 99.83 True fake: scaffold gap size wrong estimation (local) 65925583 65957073 224716 256201 NC_000014.9 scf7180000172760 99.38 True fake: not a misassembly (possible transposable element) 93165594 93166457 257543 256680 NC_000014.9 scf7180000172760 98.77 True fake: not a misassembly (possible transposable element) 65956880 65978199 257544 278851 NC_000014.9 scf7180000172760 99.84 True fake: scaffold gap size wrong estimation (local) 65978417 65982207 279688 283499 NC_000014.9 scf7180000172760 99.84 True fake: scaffold gap size wrong estimation (local) 65982340 65983002 283658 284320 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 65983162 65988798 284465 290125 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 65988965 65997064 290226 298323 NC_000014.9 scf7180000172760 99.94 True fake: scaffold gap size wrong estimation (local) 65997255 66026501 298436 327591 NC_000014.9 scf7180000172760 99.37 True fake: scaffold gap size wrong estimation (local) 66031650 66042083 334481 344920 NC_000014.9 scf7180000172760 99.75 True fake: scaffold gap size wrong estimation (local) 66042656 66062106 345408 364878 NC_000014.9 scf7180000172760 99.66 True fake: scaffold gap size wrong estimation (local) 66062840 66086196 365549 389104 NC_000014.9 scf7180000172760 98.63 True fake: scaffold gap size wrong estimation (local) 66086339 66102054 389196 405140 NC_000014.9 scf7180000172760 95.62 True fake: scaffold gap size wrong estimation (local) 66102327 66106422 405402 409497 NC_000014.9 scf7180000172760 99.88 True fake: scaffold gap size wrong estimation (local) 66106552 66145239 409598 448739 NC_000014.9 scf7180000172760 98.94 True fake: scaffold gap size wrong estimation (local) 66146448 66148060 449726 451338 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 66151477 66167609 455738 472192 NC_000014.9 scf7180000172760 97.73 True fake: scaffold gap size wrong estimation (local) 66168252 66183945 472573 488229 NC_000014.9 scf7180000172760 99.73 True fake: scaffold gap size wrong estimation (local) 66189977 66196148 496120 502291 NC_000014.9 scf7180000172760 99.98 True fake: scaffold gap size wrong estimation (local) 66196149 66199949 503666 507466 NC_000014.9 scf7180000172760 99.97 True relocation, scaffold gap is present, inconsistency = -44918867 21283764 21284555 510148 510939 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21284764 21285387 511380 512003 NC_000014.9 scf7180000172760 100.0 True local misassembly 21285569 21286099 512004 512534 NC_000014.9 scf7180000172760 96.05 True fake: scaffold gap size wrong estimation (local) 21287154 21288185 513315 514346 NC_000014.9 scf7180000172760 99.9 True fake: scaffold gap size wrong estimation (local) 21291003 21291870 514367 515234 NC_000014.9 scf7180000172760 99.88 True fake: scaffold gap size wrong estimation (local) 21299145 21300086 520618 521559 NC_000014.9 scf7180000172760 99.89 True fake: scaffold gap size wrong estimation (local) 21300304 21301568 521674 522942 NC_000014.9 scf7180000172760 99.92 True fake: scaffold gap size wrong estimation (local) 21301701 21302854 523199 524352 NC_000014.9 scf7180000172760 99.65 True local misassembly 21303008 21303781 524364 525137 NC_000014.9 scf7180000172760 97.16 True fake: scaffold gap size wrong estimation (local) 21304962 21306120 526438 527596 NC_000014.9 scf7180000172760 98.02 True fake: scaffold gap size wrong estimation (local) 21306971 21308807 528452 530288 NC_000014.9 scf7180000172760 99.89 True fake: scaffold gap size wrong estimation (local) 21308808 21309840 530760 531792 NC_000014.9 scf7180000172760 99.81 True fake: scaffold gap size wrong estimation (local) 21310243 21311390 531994 533141 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21312777 21313345 534625 535193 NC_000014.9 scf7180000172760 100.0 True indel: indel (<= 5bp) 21313347 21313963 535194 535810 NC_000014.9 scf7180000172760 99.84 True fake: scaffold gap size wrong estimation (local) 21314126 21315256 535967 537120 NC_000014.9 scf7180000172760 98.94 True fake: scaffold gap size wrong estimation (local) 21316337 21316912 538319 538894 NC_000014.9 scf7180000172760 99.83 True fake: scaffold gap size wrong estimation (local) 21317057 21318608 538983 540556 NC_000014.9 scf7180000172760 99.49 True fake: scaffold gap size wrong estimation (local) 21318701 21320341 540745 542385 NC_000014.9 scf7180000172760 99.94 True fake: scaffold gap size wrong estimation (local) 21320819 21328869 542818 550737 NC_000014.9 scf7180000172760 98.02 True fake: scaffold gap size wrong estimation (local) 21329974 21330499 551801 552326 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21331432 21331937 553191 553696 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21332180 21333928 554066 555884 NC_000014.9 scf7180000172760 97.22 True fake: scaffold gap size wrong estimation (local) 21334148 21334844 556011 556707 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21335071 21337591 557118 559559 NC_000014.9 scf7180000172760 96.56 True fake: scaffold gap size wrong estimation (local) 21338189 21339068 560152 561031 NC_000014.9 scf7180000172760 99.77 True fake: scaffold gap size wrong estimation (local) 21339289 21340414 561180 562305 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21340553 21343687 562511 565600 NC_000014.9 scf7180000172760 98.43 True fake: scaffold gap size wrong estimation (local) 21343932 21346250 565776 568041 NC_000014.9 scf7180000172760 97.61 True fake: scaffold gap size wrong estimation (local) 21346718 21349085 568545 570896 NC_000014.9 scf7180000172760 99.14 True fake: scaffold gap size wrong estimation (local) 21349414 21355240 571281 577020 NC_000014.9 scf7180000172760 98.47 True fake: scaffold gap size wrong estimation (local) 21355530 21360188 577304 581986 NC_000014.9 scf7180000172760 99.85 True fake: scaffold gap size wrong estimation (local) 21361331 21363791 583086 585546 NC_000014.9 scf7180000172760 99.92 True fake: scaffold gap size wrong estimation (local) 21363915 21373039 585668 594869 NC_000014.9 scf7180000172760 99.24 True fake: scaffold gap size wrong estimation (local) 21373213 21387227 595097 608969 NC_000014.9 scf7180000172760 98.37 True fake: scaffold gap size wrong estimation (local) 21387813 21401673 609721 623358 NC_000014.9 scf7180000172760 97.07 True indel: indel (<= 5bp) 21401806 21403844 623490 625528 NC_000014.9 scf7180000172760 99.95 True fake: scaffold gap size wrong estimation (local) 21404105 21412258 625708 633902 NC_000014.9 scf7180000172760 99.83 True fake: scaffold gap size wrong estimation (local) 21412408 21416555 634054 638113 NC_000014.9 scf7180000172760 97.81 True fake: scaffold gap size wrong estimation (local) 21417899 21418616 639339 640056 NC_000014.9 scf7180000172760 99.86 True indel: indel (<= 5bp) 21418617 21419336 640058 640777 NC_000014.9 scf7180000172760 97.22 True fake: scaffold gap size wrong estimation (local) 21419486 21422163 641288 643855 NC_000014.9 scf7180000172760 95.82 True fake: scaffold gap size wrong estimation (local) 21423205 21424522 644975 646292 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21424673 21425350 646349 647026 NC_000014.9 scf7180000172760 99.85 True fake: scaffold gap size wrong estimation (local) 21425596 21434050 647370 655596 NC_000014.9 scf7180000172760 97.29 True fake: scaffold gap size wrong estimation (local) 21434158 21438154 655716 659712 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21438309 21440291 659831 661829 NC_000014.9 scf7180000172760 99.54 True fake: scaffold gap size wrong estimation (local) 21440428 21441679 662008 663259 NC_000014.9 scf7180000172760 100.0 True local misassembly 21441839 21442684 663260 664105 NC_000014.9 scf7180000172760 97.64 True fake: scaffold gap size wrong estimation (local) 21443878 21445693 665316 667122 NC_000014.9 scf7180000172760 99.44 True fake: scaffold gap size wrong estimation (local) 21446393 21447384 667901 668892 NC_000014.9 scf7180000172760 100.0 True local misassembly 21447502 21448678 668893 670069 NC_000014.9 scf7180000172760 98.13 True fake: scaffold gap size wrong estimation (local) 21449076 21451356 670517 672797 NC_000014.9 scf7180000172760 99.96 True fake: scaffold gap size wrong estimation (local) 21451588 21452259 673435 674106 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21454194 21456893 675641 678340 NC_000014.9 scf7180000172760 99.93 True fake: scaffold gap size wrong estimation (local) 21457821 21460387 679158 681754 NC_000014.9 scf7180000172760 99.96 True fake: scaffold gap size wrong estimation (local) 21460606 21463256 681901 684577 NC_000014.9 scf7180000172760 99.7 True fake: scaffold gap size wrong estimation (local) 21463460 21466233 684812 687597 NC_000014.9 scf7180000172760 99.96 True fake: scaffold gap size wrong estimation (local) 21466404 21469994 687699 691289 NC_000014.9 scf7180000172760 99.92 True fake: scaffold gap size wrong estimation (local) 21470224 21470898 691532 692206 NC_000014.9 scf7180000172760 100.0 True fake: scaffold gap size wrong estimation (local) 21471966 21473735 693166 694935 NC_000014.9 scf7180000172760 99.77 True fake: scaffold gap size wrong estimation (local) 21473973 21478054 695157 699346 NC_000014.9 scf7180000172760 97.41 True fake: scaffold gap size wrong estimation (local) 21478169 21478969 699493 700293 NC_000014.9 scf7180000172760 99.38 True fake: scaffold gap size wrong estimation (local) 21479650 21480864 700854 702068 NC_000014.9 scf7180000172760 99.84 True fake: scaffold gap size wrong estimation (local) 21480981 21484337 702249 705622 NC_000014.9 scf7180000172760 99.58 True fake: scaffold gap size wrong estimation (local) 21485869 21489814 706022 709990 NC_000014.9 scf7180000172760 99.82 True fake: scaffold gap size wrong estimation (local) 21491136 21491761 711244 711869 NC_000014.9 scf7180000172760 99.68 True fake: scaffold gap size wrong estimation (local) 21491967 21493541 711983 713557 NC_000014.9 scf7180000172760 99.68 True fake: scaffold gap size wrong estimation (local) 21494915 21496050 714827 715963 NC_000014.9 scf7180000172760 99.82 True fake: scaffold gap size wrong estimation (local) 21496216 21497513 716070 717367 NC_000014.9 scf7180000172760 99.85 True fake: scaffold gap size wrong estimation (local) 21497799 21506369 717660 725892 NC_000014.9 scf7180000172760 95.47 True fake: scaffold gap size wrong estimation (local) 21507140 21508704 726773 728337 NC_000014.9 scf7180000172760 99.81 True fake: scaffold gap size wrong estimation (local) 21508832 21512475 728423 732052 NC_000014.9 scf7180000172760 96.86 True fake: scaffold gap size wrong estimation (local) 21512649 21515174 732212 734817 NC_000014.9 scf7180000172760 99.41 True fake: scaffold gap size wrong estimation (local) 21515574 21518067 735199 737696 NC_000014.9 scf7180000172760 99.05 True fake: scaffold gap size wrong estimation (local) 21518333 21530279 737947 749830 NC_000014.9 scf7180000172760 99.0 True fake: scaffold gap size wrong estimation (local) 21530749 21531491 750469 751211 NC_000014.9 scf7180000172760 100.0 True CONTIG scf7180000172760 751211 misassembled 94069070 94070250 1 1181 NC_000014.9 scf7180000172761 99.41 True fake: scaffold gap size wrong estimation (local) 94074027 94082484 4997 13425 NC_000014.9 scf7180000172761 99.57 True relocation, scaffold gap is present, inconsistency = -3372605 90710079 90710835 13625 14381 NC_000014.9 scf7180000172761 99.5 True relocation, inconsistency = -18403576 72307260 72309359 14382 16481 NC_000014.9 scf7180000172761 99.9 True relocation, scaffold gap is present, inconsistency = 21772918 94082298 94087549 16502 21753 NC_000014.9 scf7180000172761 99.92 True fake: scaffold gap size wrong estimation (local) 94087718 94092267 21875 26333 NC_000014.9 scf7180000172761 97.17 True fake: scaffold gap size wrong estimation (local) 94092498 94093022 26505 27029 NC_000014.9 scf7180000172761 99.05 True fake: scaffold gap size wrong estimation (local) 94093438 94098195 27452 32026 NC_000014.9 scf7180000172761 96.05 True fake: scaffold gap size wrong estimation (local) 94097770 94105440 32517 40187 NC_000014.9 scf7180000172761 99.9 True fake: scaffold gap size wrong estimation (local) 94105173 94108068 40426 43228 NC_000014.9 scf7180000172761 96.39 True fake: scaffold gap size wrong estimation (local) 94108283 94109124 43501 44342 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94109312 94113450 44470 48608 NC_000014.9 scf7180000172761 99.93 True local misassembly 94113768 94115784 48609 50625 NC_000014.9 scf7180000172761 99.01 True local misassembly 94113495 94133388 50730 70546 NC_000014.9 scf7180000172761 99.28 True fake: scaffold gap size wrong estimation (local) 94133479 94137682 70640 74900 NC_000014.9 scf7180000172761 99.76 True fake: scaffold gap size wrong estimation (local) 94137937 94140478 75155 77714 NC_000014.9 scf7180000172761 99.88 True fake: scaffold gap size wrong estimation (local) 94140723 94144125 77901 81267 NC_000014.9 scf7180000172761 98.69 True fake: scaffold gap size wrong estimation (local) 94144467 94145391 81538 82462 NC_000014.9 scf7180000172761 99.89 True fake: scaffold gap size wrong estimation (local) 94145770 94146758 82831 83819 NC_000014.9 scf7180000172761 99.9 True fake: scaffold gap size wrong estimation (local) 94152450 94155018 89930 92498 NC_000014.9 scf7180000172761 99.77 True fake: scaffold gap size wrong estimation (local) 94155434 94170948 92798 108337 NC_000014.9 scf7180000172761 99.84 True fake: scaffold gap size wrong estimation (local) 94171133 94173980 108796 111643 NC_000014.9 scf7180000172761 99.93 True fake: scaffold gap size wrong estimation (local) 94174287 94184514 111923 122151 NC_000014.9 scf7180000172761 99.86 True fake: not a misassembly (possible transposable element) 63665717 63666835 123335 122217 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 94184365 94187139 123336 126110 NC_000014.9 scf7180000172761 99.96 True fake: scaffold gap size wrong estimation (local) 94187140 94190063 126226 129149 NC_000014.9 scf7180000172761 99.62 True fake: scaffold gap size wrong estimation (local) 94190874 94191511 129812 130449 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94191512 94196200 131004 135692 NC_000014.9 scf7180000172761 99.96 True fake: scaffold gap size wrong estimation (local) 94196588 94199647 136022 139081 NC_000014.9 scf7180000172761 99.97 True fake: not a misassembly (possible transposable element) 70873620 70874263 139949 139306 NC_000014.9 scf7180000172761 99.69 True fake: not a misassembly (possible transposable element) 94199615 94202767 139950 143102 NC_000014.9 scf7180000172761 99.81 True fake: scaffold gap size wrong estimation (local) 94202942 94220004 143293 160214 NC_000014.9 scf7180000172761 98.39 True fake: scaffold gap size wrong estimation (local) 94220133 94232873 160366 173108 NC_000014.9 scf7180000172761 99.82 True fake: scaffold gap size wrong estimation (local) 94233046 94235398 173266 175618 NC_000014.9 scf7180000172761 99.83 True fake: scaffold gap size wrong estimation (local) 94235670 94239272 175820 179422 NC_000014.9 scf7180000172761 99.92 True fake: scaffold gap size wrong estimation (local) 94239420 94247995 179800 188375 NC_000014.9 scf7180000172761 99.94 True fake: scaffold gap size wrong estimation (local) 94248231 94268719 188632 209052 NC_000014.9 scf7180000172761 99.56 True fake: scaffold gap size wrong estimation (local) 94268889 94277098 209151 217381 NC_000014.9 scf7180000172761 99.87 True fake: scaffold gap size wrong estimation (local) 94277282 94281186 217575 221513 NC_000014.9 scf7180000172761 99.82 True fake: scaffold gap size wrong estimation (local) 94281416 94298811 221653 238563 NC_000014.9 scf7180000172761 96.9 True fake: not a misassembly (possible transposable element) 69685217 69686499 239880 241162 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 94299230 94300953 241163 242884 NC_000014.9 scf7180000172761 99.83 True fake: scaffold gap size wrong estimation (local) 94302480 94311686 244270 253476 NC_000014.9 scf7180000172761 99.82 True fake: scaffold gap size wrong estimation (local) 94311885 94325196 253622 267165 NC_000014.9 scf7180000172761 98.28 True fake: scaffold gap size wrong estimation (local) 94326159 94332697 268121 274659 NC_000014.9 scf7180000172761 99.96 True indel: stretch of mismatches 94332698 94359295 274660 301592 NC_000014.9 scf7180000172761 96.46 True fake: scaffold gap size wrong estimation (local) 94359547 94369534 301744 313600 NC_000014.9 scf7180000172761 99.02 True fake: scaffold gap size wrong estimation (local) 94369699 94402023 313712 346037 NC_000014.9 scf7180000172761 99.8 True fake: not a misassembly (possible transposable element) 52537065 52537923 346163 347021 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 94402192 94405469 347074 350351 NC_000014.9 scf7180000172761 99.91 True indel: indel (> 5bp) 94405493 94411272 350352 356131 NC_000014.9 scf7180000172761 99.05 True fake: scaffold gap size wrong estimation (local) 94411273 94416877 357390 362994 NC_000014.9 scf7180000172761 99.39 True fake: scaffold gap size wrong estimation (local) 94417467 94434472 363523 380749 NC_000014.9 scf7180000172761 98.55 True fake: scaffold gap size wrong estimation (local) 94434541 94435531 380806 381796 NC_000014.9 scf7180000172761 99.8 True indel: indel (> 5bp) 94435603 94456445 381853 402673 NC_000014.9 scf7180000172761 99.01 True local misassembly 94457198 94473368 403431 419820 NC_000014.9 scf7180000172761 98.55 True fake: scaffold gap size wrong estimation (local) 94473532 94482580 419959 428996 NC_000014.9 scf7180000172761 99.77 True fake: scaffold gap size wrong estimation (local) 94482920 94488902 429242 435224 NC_000014.9 scf7180000172761 99.9 True fake: scaffold gap size wrong estimation (local) 94489053 94495079 435320 441346 NC_000014.9 scf7180000172761 99.93 True fake: scaffold gap size wrong estimation (local) 94495342 94526132 441526 473009 NC_000014.9 scf7180000172761 97.81 True fake: scaffold gap size wrong estimation (local) 94526424 94553176 473345 500634 NC_000014.9 scf7180000172761 97.65 True fake: scaffold gap size wrong estimation (local) 94553368 94553943 500932 501507 NC_000014.9 scf7180000172761 99.83 True fake: scaffold gap size wrong estimation (local) 94554438 94588719 501867 536343 NC_000014.9 scf7180000172761 98.71 True fake: scaffold gap size wrong estimation (local) 94587958 94601338 536813 549957 NC_000014.9 scf7180000172761 97.82 True fake: scaffold gap size wrong estimation (local) 94601570 94603540 550254 552252 NC_000014.9 scf7180000172761 99.8 True fake: scaffold gap size wrong estimation (local) 94603721 94606180 552512 554971 NC_000014.9 scf7180000172761 99.92 True fake: scaffold gap size wrong estimation (local) 94606337 94607733 555282 556678 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94609251 94610336 558653 559738 NC_000014.9 scf7180000172761 99.63 True fake: scaffold gap size wrong estimation (local) 94610481 94610983 559787 560289 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94611142 94611744 560337 560941 NC_000014.9 scf7180000172761 99.67 True fake: scaffold gap size wrong estimation (local) 94611970 94634797 561304 584121 NC_000014.9 scf7180000172761 99.88 True fake: scaffold gap size wrong estimation (local) 94634739 94637442 584633 587336 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 31182810 31183826 587511 588527 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 94637871 94640232 588548 590909 NC_000014.9 scf7180000172761 99.83 True fake: scaffold gap size wrong estimation (local) 94640465 94656455 591113 607387 NC_000014.9 scf7180000172761 98.14 True fake: scaffold gap size wrong estimation (local) 94656767 94657444 607631 608308 NC_000014.9 scf7180000172761 99.56 True fake: scaffold gap size wrong estimation (local) 94658900 94674978 609783 625887 NC_000014.9 scf7180000172761 99.08 True fake: scaffold gap size wrong estimation (local) 94675206 94676243 626106 627143 NC_000014.9 scf7180000172761 99.61 True fake: scaffold gap size wrong estimation (local) 94676409 94684254 627257 635074 NC_000014.9 scf7180000172761 99.11 True fake: scaffold gap size wrong estimation (local) 94684819 94688044 635709 638921 NC_000014.9 scf7180000172761 99.28 True fake: scaffold gap size wrong estimation (local) 94688293 94692737 639191 643633 NC_000014.9 scf7180000172761 99.8 True fake: scaffold gap size wrong estimation (local) 94692889 94693579 643730 644420 NC_000014.9 scf7180000172761 99.86 True fake: scaffold gap size wrong estimation (local) 94694083 94696399 645041 647311 NC_000014.9 scf7180000172761 97.35 True fake: scaffold gap size wrong estimation (local) 94696552 94698797 647440 649685 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94698897 94701124 649811 652038 NC_000014.9 scf7180000172761 99.96 True fake: scaffold gap size wrong estimation (local) 94701417 94702388 652412 653383 NC_000014.9 scf7180000172761 99.9 True local misassembly 94702560 94704558 653384 655382 NC_000014.9 scf7180000172761 98.1 True indel: indel (<= 5bp) 94704755 94705619 655581 656444 NC_000014.9 scf7180000172761 99.88 True fake: scaffold gap size wrong estimation (local) 94705755 94708179 656469 659015 NC_000014.9 scf7180000172761 99.71 True fake: scaffold gap size wrong estimation (local) 94705803 94707014 659036 660247 NC_000014.9 scf7180000172761 100.0 True local misassembly 94708137 94709787 660248 661898 NC_000014.9 scf7180000172761 96.0 True fake: scaffold gap size wrong estimation (local) 94709986 94718110 662056 670208 NC_000014.9 scf7180000172761 96.96 True fake: scaffold gap size wrong estimation (local) 94718325 94721747 670396 673738 NC_000014.9 scf7180000172761 97.62 True fake: scaffold gap size wrong estimation (local) 94721857 94723406 673855 675404 NC_000014.9 scf7180000172761 100.0 True fake: not a misassembly (possible transposable element) 76631425 76632365 676395 675455 NC_000014.9 scf7180000172761 99.79 True fake: not a misassembly (possible transposable element) 94723746 94728433 676449 681099 NC_000014.9 scf7180000172761 98.52 True fake: scaffold gap size wrong estimation (local) 94728518 94729638 681161 682294 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94730160 94732066 682927 684833 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94732295 94734941 685004 687650 NC_000014.9 scf7180000172761 99.89 True fake: scaffold gap size wrong estimation (local) 94734942 94737317 688306 690681 NC_000014.9 scf7180000172761 99.87 True fake: scaffold gap size wrong estimation (local) 94737318 94739590 690712 692984 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94740039 94742413 693374 695748 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94743334 94744175 696668 697509 NC_000014.9 scf7180000172761 99.76 True fake: scaffold gap size wrong estimation (local) 94744638 94745445 697884 698691 NC_000014.9 scf7180000172761 96.41 True fake: scaffold gap size wrong estimation (local) 94746141 94747397 699350 700606 NC_000014.9 scf7180000172761 99.92 True fake: scaffold gap size wrong estimation (local) 94747493 94751807 700729 705084 NC_000014.9 scf7180000172761 99.75 True fake: scaffold gap size wrong estimation (local) 94751930 94753989 705221 707280 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94754213 94754841 707504 708132 NC_000014.9 scf7180000172761 100.0 True local misassembly 94754948 94755704 708133 708889 NC_000014.9 scf7180000172761 97.09 True fake: scaffold gap size wrong estimation (local) 94756019 94766013 709073 719375 NC_000014.9 scf7180000172761 96.1 True fake: scaffold gap size wrong estimation (local) 94766119 94776565 719743 730185 NC_000014.9 scf7180000172761 99.93 True fake: scaffold gap size wrong estimation (local) 94776783 94778539 730354 732134 NC_000014.9 scf7180000172761 99.43 True fake: scaffold gap size wrong estimation (local) 94778708 94780249 732333 733874 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94780472 94782865 734107 736516 NC_000014.9 scf7180000172761 99.96 True fake: scaffold gap size wrong estimation (local) 94783114 94786033 736699 739606 NC_000014.9 scf7180000172761 99.59 True fake: scaffold gap size wrong estimation (local) 94786156 94788201 739711 741756 NC_000014.9 scf7180000172761 99.95 True fake: scaffold gap size wrong estimation (local) 94788354 94788936 741881 742463 NC_000014.9 scf7180000172761 100.0 True fake: scaffold gap size wrong estimation (local) 94789135 94791393 742709 744934 NC_000014.9 scf7180000172761 98.08 True fake: scaffold gap size wrong estimation (local) 94791783 94793447 745420 747015 NC_000014.9 scf7180000172761 95.69 True fake: scaffold gap size wrong estimation (local) 94793677 94796874 747158 750429 NC_000014.9 scf7180000172761 98.25 True indel: indel (<= 5bp) 94796949 94803855 750506 757421 NC_000014.9 scf7180000172761 99.87 True fake: scaffold gap size wrong estimation (local) 94804022 94813257 757589 766854 NC_000014.9 scf7180000172761 97.02 True fake: scaffold gap size wrong estimation (local) 94813358 94815813 766982 769440 NC_000014.9 scf7180000172761 99.96 True fake: scaffold gap size wrong estimation (local) 94817323 94818190 770858 771725 NC_000014.9 scf7180000172761 99.88 True CONTIG scf7180000172761 771725 misassembled 73127191 73128516 1326 1 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73114816 73126453 13613 1998 NC_000014.9 scf7180000172762 98.75 True fake: scaffold gap size wrong estimation (local) 73113592 73114666 14855 13781 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73110649 73112785 17987 15851 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73107054 73109581 21594 19067 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73097455 73106855 31052 21722 NC_000014.9 scf7180000172762 98.77 True fake: scaffold gap size wrong estimation (local) 73096142 73097209 32320 31253 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73095477 73096172 33598 32903 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73092786 73093591 36045 35240 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73090325 73092666 38717 36376 NC_000014.9 scf7180000172762 99.96 True fake: scaffold gap size wrong estimation (local) 73089778 73090287 39643 39134 NC_000014.9 scf7180000172762 96.08 True local misassembly 73089000 73089544 40188 39644 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73087662 73088923 41605 40344 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73085716 73086228 43696 43184 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73084677 73085278 44472 43871 NC_000014.9 scf7180000172762 99.34 True fake: scaffold gap size wrong estimation (local) 73084128 73084651 45232 44709 NC_000014.9 scf7180000172762 99.62 True fake: scaffold gap size wrong estimation (local) 73081313 73083910 48019 45435 NC_000014.9 scf7180000172762 98.83 True fake: scaffold gap size wrong estimation (local) 73071245 73080223 58112 49117 NC_000014.9 scf7180000172762 99.28 True fake: scaffold gap size wrong estimation (local) 73065712 73067605 63530 61700 NC_000014.9 scf7180000172762 95.21 True fake: scaffold gap size wrong estimation (local) 73063420 73065173 65823 64073 NC_000014.9 scf7180000172762 99.77 True fake: scaffold gap size wrong estimation (local) 73060184 73063193 69018 66009 NC_000014.9 scf7180000172762 99.87 True relocation, scaffold gap is present, inconsistency = 11700861 84764075 84765871 69039 70835 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 84767063 84772547 71937 77432 NC_000014.9 scf7180000172762 99.69 True fake: scaffold gap size wrong estimation (local) 84772736 84790101 77572 94852 NC_000014.9 scf7180000172762 99.23 True fake: scaffold gap size wrong estimation (local) 84790260 84812271 94963 117660 NC_000014.9 scf7180000172762 96.96 True fake: scaffold gap size wrong estimation (local) 84812570 84853066 117891 158435 NC_000014.9 scf7180000172762 99.52 True fake: scaffold gap size wrong estimation (local) 84853344 84861699 158722 167071 NC_000014.9 scf7180000172762 99.86 True fake: scaffold gap size wrong estimation (local) 84861973 84866617 167341 171985 NC_000014.9 scf7180000172762 99.68 True fake: scaffold gap size wrong estimation (local) 84866618 84878874 173008 185264 NC_000014.9 scf7180000172762 99.94 True fake: scaffold gap size wrong estimation (local) 84878875 84880433 185629 187187 NC_000014.9 scf7180000172762 99.81 True fake: scaffold gap size wrong estimation (local) 84881223 84883519 187942 190238 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 84884872 84899067 191606 205612 NC_000014.9 scf7180000172762 98.42 True fake: scaffold gap size wrong estimation (local) 84899246 84902893 205740 209383 NC_000014.9 scf7180000172762 99.89 True fake: scaffold gap size wrong estimation (local) 84902994 84909032 209486 215524 NC_000014.9 scf7180000172762 99.95 True fake: scaffold gap size wrong estimation (local) 84909258 84913948 215710 220587 NC_000014.9 scf7180000172762 96.5 True fake: scaffold gap size wrong estimation (local) 84914208 84922154 220811 228756 NC_000014.9 scf7180000172762 99.94 True fake: scaffold gap size wrong estimation (local) 84923293 84928455 229725 234887 NC_000014.9 scf7180000172762 99.92 True fake: scaffold gap size wrong estimation (local) 84928659 84939125 235063 245759 NC_000014.9 scf7180000172762 98.01 True fake: scaffold gap size wrong estimation (local) 84939265 84946381 245865 252986 NC_000014.9 scf7180000172762 99.4 True relocation, inconsistency = 34473222 50463909 50466042 255120 252987 NC_000014.9 scf7180000172762 99.77 True fake: scaffold gap size wrong estimation (local) 50461235 50463630 257840 255422 NC_000014.9 scf7180000172762 99.5 True fake: scaffold gap size wrong estimation (local) 50431845 50461136 287207 257989 NC_000014.9 scf7180000172762 99.44 True fake: scaffold gap size wrong estimation (local) 50428519 50431269 290528 287778 NC_000014.9 scf7180000172762 99.93 True fake: scaffold gap size wrong estimation (local) 50424730 50428331 294260 290661 NC_000014.9 scf7180000172762 99.83 True fake: scaffold gap size wrong estimation (local) 50415097 50424551 303613 294386 NC_000014.9 scf7180000172762 97.37 True fake: scaffold gap size wrong estimation (local) 50414346 50415100 304693 303939 NC_000014.9 scf7180000172762 99.87 True fake: scaffold gap size wrong estimation (local) 50412926 50414069 305923 304780 NC_000014.9 scf7180000172762 99.83 True fake: scaffold gap size wrong estimation (local) 50408026 50411862 310843 307002 NC_000014.9 scf7180000172762 99.74 True fake: scaffold gap size wrong estimation (local) 50406834 50407848 311954 310941 NC_000014.9 scf7180000172762 99.8 True fake: scaffold gap size wrong estimation (local) 50405183 50406651 313588 312120 NC_000014.9 scf7180000172762 99.93 True fake: scaffold gap size wrong estimation (local) 50402533 50404925 316229 313871 NC_000014.9 scf7180000172762 98.36 True fake: scaffold gap size wrong estimation (local) 50401257 50402204 317409 316462 NC_000014.9 scf7180000172762 99.79 True fake: scaffold gap size wrong estimation (local) 50399903 50400502 318319 317720 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 50389114 50398827 329468 319598 NC_000014.9 scf7180000172762 97.29 True fake: scaffold gap size wrong estimation (local) 50387456 50388945 331269 329780 NC_000014.9 scf7180000172762 100.0 True local misassembly 50385811 50386959 332418 331270 NC_000014.9 scf7180000172762 98.96 True fake: scaffold gap size wrong estimation (local) 50383565 50384687 334551 333429 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 50375751 50381856 342602 336497 NC_000014.9 scf7180000172762 99.92 True fake: scaffold gap size wrong estimation (local) 50370195 50375632 348152 342696 NC_000014.9 scf7180000172762 99.72 True fake: scaffold gap size wrong estimation (local) 50369069 50369608 349149 348610 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 50362373 50368873 356412 349363 NC_000014.9 scf7180000172762 99.92 True fake: scaffold gap size wrong estimation (local) 50360616 50362069 358136 356685 NC_000014.9 scf7180000172762 99.86 True fake: scaffold gap size wrong estimation (local) 50358816 50360467 360070 358409 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 50354168 50358649 364604 360171 NC_000014.9 scf7180000172762 98.85 True fake: scaffold gap size wrong estimation (local) 50346781 50353979 371928 364728 NC_000014.9 scf7180000172762 99.72 True fake: scaffold gap size wrong estimation (local) 50344523 50346584 374154 372093 NC_000014.9 scf7180000172762 100.0 True relocation, inconsistency = 22242930 72589515 72597068 374155 381705 NC_000014.9 scf7180000172762 99.71 True fake: scaffold gap size wrong estimation (local) 72597173 72599397 381835 384061 NC_000014.9 scf7180000172762 99.15 True fake: scaffold gap size wrong estimation (local) 72599675 72620965 384348 405687 NC_000014.9 scf7180000172762 99.82 True fake: scaffold gap size wrong estimation (local) 72621144 72624346 405798 409000 NC_000014.9 scf7180000172762 99.97 True fake: scaffold gap size wrong estimation (local) 72624351 72638834 409104 423452 NC_000014.9 scf7180000172762 98.99 True fake: scaffold gap size wrong estimation (local) 72639042 72648400 423612 432973 NC_000014.9 scf7180000172762 99.89 True fake: scaffold gap size wrong estimation (local) 72648572 72681970 433085 466678 NC_000014.9 scf7180000172762 99.51 True fake: scaffold gap size wrong estimation (local) 72682218 72683223 466783 467788 NC_000014.9 scf7180000172762 99.9 True fake: scaffold gap size wrong estimation (local) 72683345 72691586 467927 476035 NC_000014.9 scf7180000172762 98.34 True fake: scaffold gap size wrong estimation (local) 72691695 72706901 476128 491627 NC_000014.9 scf7180000172762 98.13 True fake: scaffold gap size wrong estimation (local) 72707352 72718774 492011 503462 NC_000014.9 scf7180000172762 99.84 True fake: scaffold gap size wrong estimation (local) 72719081 72727327 503714 512013 NC_000014.9 scf7180000172762 99.36 True fake: scaffold gap size wrong estimation (local) 72727563 72730972 512207 515616 NC_000014.9 scf7180000172762 99.94 True fake: scaffold gap size wrong estimation (local) 72731152 72747626 515773 532255 NC_000014.9 scf7180000172762 99.85 True fake: scaffold gap size wrong estimation (local) 72747649 72749696 532476 534528 NC_000014.9 scf7180000172762 98.83 True fake: scaffold gap size wrong estimation (local) 72749873 72756583 534690 541407 NC_000014.9 scf7180000172762 99.9 True fake: scaffold gap size wrong estimation (local) 72756808 72764495 541902 549611 NC_000014.9 scf7180000172762 99.44 True fake: scaffold gap size wrong estimation (local) 72764763 72769482 549827 554539 NC_000014.9 scf7180000172762 98.7 True fake: scaffold gap size wrong estimation (local) 72769671 72773134 554705 558185 NC_000014.9 scf7180000172762 99.86 True fake: scaffold gap size wrong estimation (local) 72773408 72774038 558484 559114 NC_000014.9 scf7180000172762 99.84 True fake: scaffold gap size wrong estimation (local) 72774288 72782586 559295 567571 NC_000014.9 scf7180000172762 99.61 True fake: scaffold gap size wrong estimation (local) 72782807 72798052 567804 583108 NC_000014.9 scf7180000172762 99.46 True fake: scaffold gap size wrong estimation (local) 72798262 72805269 583491 590528 NC_000014.9 scf7180000172762 99.32 True fake: not a misassembly (possible transposable element) 38313003 38315448 593111 590666 NC_000014.9 scf7180000172762 99.88 True fake: not a misassembly (possible transposable element) 72805824 72817426 593113 604719 NC_000014.9 scf7180000172762 99.75 True fake: scaffold gap size wrong estimation (local) 72817988 72822142 605210 609361 NC_000014.9 scf7180000172762 99.81 True fake: scaffold gap size wrong estimation (local) 72822263 72826916 609445 614158 NC_000014.9 scf7180000172762 98.8 True fake: scaffold gap size wrong estimation (local) 72827046 72829422 614286 616651 NC_000014.9 scf7180000172762 98.29 True fake: scaffold gap size wrong estimation (local) 72829617 72834278 617074 621527 NC_000014.9 scf7180000172762 95.39 True fake: scaffold gap size wrong estimation (local) 72834513 72836954 621656 624090 NC_000014.9 scf7180000172762 99.55 True fake: scaffold gap size wrong estimation (local) 72837657 72838258 624697 625298 NC_000014.9 scf7180000172762 99.83 True fake: scaffold gap size wrong estimation (local) 72839128 72843664 626615 631044 NC_000014.9 scf7180000172762 97.3 True fake: scaffold gap size wrong estimation (local) 72843819 72846090 631163 633435 NC_000014.9 scf7180000172762 99.91 True fake: scaffold gap size wrong estimation (local) 72846663 72847651 633975 634963 NC_000014.9 scf7180000172762 99.9 True fake: scaffold gap size wrong estimation (local) 72848417 72853475 635662 640738 NC_000014.9 scf7180000172762 99.45 True fake: scaffold gap size wrong estimation (local) 72853626 72854156 640863 641393 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72854331 72857671 641516 644856 NC_000014.9 scf7180000172762 99.91 True indel: indel (<= 5bp) 72857756 72860567 644940 647822 NC_000014.9 scf7180000172762 99.29 True fake: scaffold gap size wrong estimation (local) 72860816 72865828 648018 652906 NC_000014.9 scf7180000172762 97.35 True fake: scaffold gap size wrong estimation (local) 72865949 72866597 653009 653657 NC_000014.9 scf7180000172762 100.0 True local misassembly 72866721 72867825 653658 654762 NC_000014.9 scf7180000172762 98.01 True fake: scaffold gap size wrong estimation (local) 72867826 72870820 654885 657879 NC_000014.9 scf7180000172762 99.97 True fake: scaffold gap size wrong estimation (local) 72870988 72871692 658084 658788 NC_000014.9 scf7180000172762 99.72 True local misassembly 72871845 72872522 658789 659466 NC_000014.9 scf7180000172762 96.46 True fake: not a misassembly (possible transposable element) 70942008 70943320 663353 662041 NC_000014.9 scf7180000172762 99.47 True fake: not a misassembly (possible transposable element) 72875343 72884839 663374 673230 NC_000014.9 scf7180000172762 95.6 True fake: scaffold gap size wrong estimation (local) 72885098 72886166 673498 674558 NC_000014.9 scf7180000172762 99.16 True fake: scaffold gap size wrong estimation (local) 72886300 72898207 674693 686534 NC_000014.9 scf7180000172762 98.57 True fake: scaffold gap size wrong estimation (local) 72898359 72910877 686677 699232 NC_000014.9 scf7180000172762 99.64 True fake: scaffold gap size wrong estimation (local) 72911025 72912671 699318 700964 NC_000014.9 scf7180000172762 99.88 True fake: scaffold gap size wrong estimation (local) 72913352 72914566 701634 702848 NC_000014.9 scf7180000172762 99.51 True fake: scaffold gap size wrong estimation (local) 72915469 72919562 703777 707856 NC_000014.9 scf7180000172762 99.44 True fake: scaffold gap size wrong estimation (local) 72919750 72920571 708045 708866 NC_000014.9 scf7180000172762 99.64 True fake: scaffold gap size wrong estimation (local) 72920836 72922418 709103 710685 NC_000014.9 scf7180000172762 99.94 True fake: scaffold gap size wrong estimation (local) 72922839 72923379 711027 711567 NC_000014.9 scf7180000172762 99.63 True fake: scaffold gap size wrong estimation (local) 72923954 72924955 712134 713135 NC_000014.9 scf7180000172762 97.41 True fake: scaffold gap size wrong estimation (local) 72925076 72927348 713262 715534 NC_000014.9 scf7180000172762 99.69 True fake: scaffold gap size wrong estimation (local) 72928978 72930421 717036 718479 NC_000014.9 scf7180000172762 99.72 True fake: scaffold gap size wrong estimation (local) 72930422 72931274 718539 719391 NC_000014.9 scf7180000172762 99.88 True fake: scaffold gap size wrong estimation (local) 72931275 72932049 719414 720188 NC_000014.9 scf7180000172762 99.87 True local misassembly 72932238 72933329 720189 721280 NC_000014.9 scf7180000172762 97.89 True fake: scaffold gap size wrong estimation (local) 72933564 72936393 721588 724350 NC_000014.9 scf7180000172762 97.39 True fake: scaffold gap size wrong estimation (local) 72936539 72937421 724505 725383 NC_000014.9 scf7180000172762 99.21 True fake: scaffold gap size wrong estimation (local) 72937439 72940589 725542 728613 NC_000014.9 scf7180000172762 97.29 True fake: scaffold gap size wrong estimation (local) 72941170 72951241 729510 739601 NC_000014.9 scf7180000172762 99.65 True fake: scaffold gap size wrong estimation (local) 72951608 72952704 739982 741077 NC_000014.9 scf7180000172762 99.91 True fake: scaffold gap size wrong estimation (local) 72953842 72955926 742208 744322 NC_000014.9 scf7180000172762 99.81 True fake: scaffold gap size wrong estimation (local) 72956152 72962405 744620 750914 NC_000014.9 scf7180000172762 98.75 True fake: scaffold gap size wrong estimation (local) 72962649 72963521 751066 751938 NC_000014.9 scf7180000172762 99.77 True fake: scaffold gap size wrong estimation (local) 72964504 72968750 752820 757099 NC_000014.9 scf7180000172762 99.51 True fake: scaffold gap size wrong estimation (local) 72968897 72972033 757239 760381 NC_000014.9 scf7180000172762 99.9 True fake: scaffold gap size wrong estimation (local) 72973507 72976592 761799 764884 NC_000014.9 scf7180000172762 99.97 True fake: scaffold gap size wrong estimation (local) 72976784 72977325 765048 765589 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72977326 72978397 765619 766690 NC_000014.9 scf7180000172762 99.16 True fake: scaffold gap size wrong estimation (local) 72978573 72979406 766983 767816 NC_000014.9 scf7180000172762 97.24 True local misassembly 72979601 72980530 767817 768746 NC_000014.9 scf7180000172762 97.85 True fake: scaffold gap size wrong estimation (local) 72980693 72983460 769021 771736 NC_000014.9 scf7180000172762 97.94 True fake: scaffold gap size wrong estimation (local) 72984446 72985411 773003 773968 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72985821 72986476 774290 774945 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72986753 72988202 775232 776681 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72989191 72989768 777955 778532 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 72991437 72991987 779810 780360 NC_000014.9 scf7180000172762 99.64 True local misassembly 72992160 72993524 780361 781725 NC_000014.9 scf7180000172762 98.39 True fake: scaffold gap size wrong estimation (local) 72994238 73002779 782465 790822 NC_000014.9 scf7180000172762 97.21 True fake: scaffold gap size wrong estimation (local) 73003626 73006113 791563 794050 NC_000014.9 scf7180000172762 99.96 True fake: scaffold gap size wrong estimation (local) 73006810 73008205 794671 796066 NC_000014.9 scf7180000172762 99.79 True fake: scaffold gap size wrong estimation (local) 73008365 73010342 796488 798574 NC_000014.9 scf7180000172762 95.16 True fake: not a misassembly (possible transposable element) 73057431 73060140 801307 798597 NC_000014.9 scf7180000172762 99.82 True fake: not a misassembly (possible transposable element) 73011787 73012420 801874 802507 NC_000014.9 scf7180000172762 96.69 True local misassembly 73012576 73013438 802508 803370 NC_000014.9 scf7180000172762 99.77 True fake: scaffold gap size wrong estimation (local) 73013439 73014980 803923 805464 NC_000014.9 scf7180000172762 99.94 True relocation, scaffold gap is present, inconsistency = 41640 73056641 73057213 806062 805485 NC_000014.9 scf7180000172762 99.13 True fake: scaffold gap size wrong estimation (local) 73054476 73055556 807164 806083 NC_000014.9 scf7180000172762 99.82 True relocation, scaffold gap is present, inconsistency = 38117 73015657 73016338 807185 807866 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73016805 73018432 808450 810077 NC_000014.9 scf7180000172762 99.88 True inversion, scaffold gap is present 73032907 73034077 829524 828354 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73025655 73028531 836500 833627 NC_000014.9 scf7180000172762 99.86 True fake: scaffold gap size wrong estimation (local) 73023451 73025181 838907 837177 NC_000014.9 scf7180000172762 100.0 True fake: scaffold gap size wrong estimation (local) 73021359 73022967 840977 839369 NC_000014.9 scf7180000172762 100.0 True CONTIG scf7180000172762 844111 misassembled 103393063 103393868 1 805 NC_000014.9 scf7180000172763 99.63 True fake: scaffold gap size wrong estimation (local) 103395039 103397370 2062 4394 NC_000014.9 scf7180000172763 99.79 True fake: scaffold gap size wrong estimation (local) 103397554 103399460 4637 6543 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 103400122 103402305 7247 9394 NC_000014.9 scf7180000172763 98.29 True fake: scaffold gap size wrong estimation (local) 103402547 103405381 9663 12491 NC_000014.9 scf7180000172763 99.75 True fake: scaffold gap size wrong estimation (local) 103407049 103407560 14188 14699 NC_000014.9 scf7180000172763 99.8 True fake: scaffold gap size wrong estimation (local) 103407764 103408293 14835 15364 NC_000014.9 scf7180000172763 100.0 True local misassembly 103408418 103409263 15365 16210 NC_000014.9 scf7180000172763 97.4 True fake: scaffold gap size wrong estimation (local) 103409473 103411018 16624 18169 NC_000014.9 scf7180000172763 99.94 True local misassembly 103411138 103411695 18170 18727 NC_000014.9 scf7180000172763 95.7 True fake: scaffold gap size wrong estimation (local) 103415174 103416587 22297 23710 NC_000014.9 scf7180000172763 99.86 True fake: scaffold gap size wrong estimation (local) 103416730 103417933 23841 25030 NC_000014.9 scf7180000172763 97.93 True fake: scaffold gap size wrong estimation (local) 103418242 103419032 25390 26180 NC_000014.9 scf7180000172763 99.87 True fake: scaffold gap size wrong estimation (local) 103420342 103422272 27561 29491 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 103422387 103423950 29570 31146 NC_000014.9 scf7180000172763 99.94 True fake: scaffold gap size wrong estimation (local) 103425133 103426892 32312 34042 NC_000014.9 scf7180000172763 98.28 True fake: scaffold gap size wrong estimation (local) 103427508 103433089 34628 40186 NC_000014.9 scf7180000172763 99.42 True fake: scaffold gap size wrong estimation (local) 103433269 103435442 40335 42508 NC_000014.9 scf7180000172763 99.86 True fake: scaffold gap size wrong estimation (local) 103435677 103438012 42783 45071 NC_000014.9 scf7180000172763 97.31 True fake: scaffold gap size wrong estimation (local) 103438275 103439573 45259 46557 NC_000014.9 scf7180000172763 99.85 True fake: scaffold gap size wrong estimation (local) 103442370 103444089 49740 51459 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103444686 103447222 52021 54527 NC_000014.9 scf7180000172763 98.73 True fake: scaffold gap size wrong estimation (local) 103447975 103452434 55279 59714 NC_000014.9 scf7180000172763 98.92 True fake: scaffold gap size wrong estimation (local) 103452746 103458209 60009 65560 NC_000014.9 scf7180000172763 98.72 True fake: scaffold gap size wrong estimation (local) 103458455 103459591 65761 66897 NC_000014.9 scf7180000172763 97.89 True fake: scaffold gap size wrong estimation (local) 103460197 103461838 67440 69081 NC_000014.9 scf7180000172763 98.66 True fake: scaffold gap size wrong estimation (local) 103462037 103464301 69578 71840 NC_000014.9 scf7180000172763 99.65 True fake: scaffold gap size wrong estimation (local) 103465122 103466749 72795 74422 NC_000014.9 scf7180000172763 99.94 True fake: scaffold gap size wrong estimation (local) 103470581 103471770 76967 78156 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103472987 103473977 79246 80236 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 103474099 103475466 80354 81721 NC_000014.9 scf7180000172763 99.93 True fake: scaffold gap size wrong estimation (local) 103475806 103478002 82031 84274 NC_000014.9 scf7180000172763 99.41 True fake: scaffold gap size wrong estimation (local) 103478780 103479620 85027 85867 NC_000014.9 scf7180000172763 97.5 True fake: scaffold gap size wrong estimation (local) 103480056 103481763 86278 87983 NC_000014.9 scf7180000172763 99.82 True fake: scaffold gap size wrong estimation (local) 103482020 103484729 88071 91044 NC_000014.9 scf7180000172763 99.77 True fake: scaffold gap size wrong estimation (local) 103485270 103487851 91502 94077 NC_000014.9 scf7180000172763 98.04 True fake: scaffold gap size wrong estimation (local) 103488046 103493684 94240 99891 NC_000014.9 scf7180000172763 99.7 True fake: scaffold gap size wrong estimation (local) 103494516 103496439 100601 102631 NC_000014.9 scf7180000172763 97.99 True fake: scaffold gap size wrong estimation (local) 103496687 103504568 102868 110791 NC_000014.9 scf7180000172763 99.67 True fake: scaffold gap size wrong estimation (local) 103504685 103505759 110985 112061 NC_000014.9 scf7180000172763 99.72 True fake: scaffold gap size wrong estimation (local) 103505952 103506539 112147 112734 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103507285 103509456 113602 115773 NC_000014.9 scf7180000172763 99.77 True fake: scaffold gap size wrong estimation (local) 103509637 103511902 115981 118246 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 103512387 103514299 118717 120626 NC_000014.9 scf7180000172763 99.58 True fake: scaffold gap size wrong estimation (local) 103514419 103539845 120807 146199 NC_000014.9 scf7180000172763 99.58 True fake: scaffold gap size wrong estimation (local) 103539980 103555307 146282 161652 NC_000014.9 scf7180000172763 99.73 True fake: scaffold gap size wrong estimation (local) 103555583 103556229 161831 162477 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103556463 103566243 162717 172371 NC_000014.9 scf7180000172763 97.93 True fake: scaffold gap size wrong estimation (local) 103566359 103567074 172425 173140 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103567383 103568579 173835 175031 NC_000014.9 scf7180000172763 100.0 True local misassembly 103568834 103569887 175122 176175 NC_000014.9 scf7180000172763 98.1 True fake: scaffold gap size wrong estimation (local) 103570695 103571241 177072 177618 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103572115 103572775 178500 179160 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103573658 103575875 179928 182146 NC_000014.9 scf7180000172763 99.95 True fake: scaffold gap size wrong estimation (local) 103576270 103577761 182526 184017 NC_000014.9 scf7180000172763 98.66 True fake: scaffold gap size wrong estimation (local) 103578030 103579393 184298 185661 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103579968 103580599 186161 186792 NC_000014.9 scf7180000172763 99.05 True fake: scaffold gap size wrong estimation (local) 103580997 103583344 187185 189537 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 103583553 103585057 189768 191272 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103586915 103587518 193074 193677 NC_000014.9 scf7180000172763 99.83 True fake: scaffold gap size wrong estimation (local) 103587970 103589679 193712 195782 NC_000014.9 scf7180000172763 99.64 True fake: scaffold gap size wrong estimation (local) 103593292 103593978 199116 199802 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103594985 103595957 200332 201304 NC_000014.9 scf7180000172763 99.69 True local misassembly 103596085 103596935 201305 202155 NC_000014.9 scf7180000172763 97.18 True fake: scaffold gap size wrong estimation (local) 103597747 103599488 203204 204945 NC_000014.9 scf7180000172763 99.83 True fake: scaffold gap size wrong estimation (local) 103600467 103601007 205899 206439 NC_000014.9 scf7180000172763 96.3 True local misassembly 103601111 103601617 206440 206946 NC_000014.9 scf7180000172763 95.66 True fake: scaffold gap size wrong estimation (local) 103604377 103605848 209556 211027 NC_000014.9 scf7180000172763 95.92 True fake: scaffold gap size wrong estimation (local) 103606129 103609012 211369 214224 NC_000014.9 scf7180000172763 98.75 True fake: scaffold gap size wrong estimation (local) 103609425 103610280 215138 215993 NC_000014.9 scf7180000172763 99.42 True fake: scaffold gap size wrong estimation (local) 103613485 103614550 217745 218810 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 103616688 103618050 220964 222385 NC_000014.9 scf7180000172763 97.08 True fake: scaffold gap size wrong estimation (local) 103619833 103620455 223568 224190 NC_000014.9 scf7180000172763 99.84 True fake: scaffold gap size wrong estimation (local) 103620484 103621533 224941 225990 NC_000014.9 scf7180000172763 99.81 True fake: scaffold gap size wrong estimation (local) 103623211 103624595 227572 228956 NC_000014.9 scf7180000172763 99.86 True fake: scaffold gap size wrong estimation (local) 103624854 103631206 229184 235701 NC_000014.9 scf7180000172763 97.26 True fake: scaffold gap size wrong estimation (local) 103632240 103633087 236889 237736 NC_000014.9 scf7180000172763 99.65 True local misassembly 103633304 103633968 237737 238401 NC_000014.9 scf7180000172763 96.84 True fake: scaffold gap size wrong estimation (local) 103634150 103635519 238775 240144 NC_000014.9 scf7180000172763 99.71 True fake: scaffold gap size wrong estimation (local) 103635520 103636249 240320 241049 NC_000014.9 scf7180000172763 99.86 True fake: scaffold gap size wrong estimation (local) 103637462 103638672 242127 243337 NC_000014.9 scf7180000172763 99.92 True fake: scaffold gap size wrong estimation (local) 103638673 103639303 243364 243994 NC_000014.9 scf7180000172763 99.84 True local misassembly 103639614 103640434 243995 244815 NC_000014.9 scf7180000172763 99.39 True fake: scaffold gap size wrong estimation (local) 103640634 103642749 245498 247520 NC_000014.9 scf7180000172763 95.52 True fake: scaffold gap size wrong estimation (local) 103642979 103643959 248010 248990 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 103644405 103645075 249109 249779 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103645246 103645789 250197 250740 NC_000014.9 scf7180000172763 99.82 True fake: scaffold gap size wrong estimation (local) 103645974 103647250 250854 252213 NC_000014.9 scf7180000172763 99.07 True fake: scaffold gap size wrong estimation (local) 103648222 103649708 253059 254545 NC_000014.9 scf7180000172763 99.33 True fake: scaffold gap size wrong estimation (local) 103649931 103655427 254760 260212 NC_000014.9 scf7180000172763 97.41 True fake: scaffold gap size wrong estimation (local) 103655736 103658431 260516 263211 NC_000014.9 scf7180000172763 99.96 True fake: scaffold gap size wrong estimation (local) 103658931 103663094 263798 267912 NC_000014.9 scf7180000172763 98.47 True fake: scaffold gap size wrong estimation (local) 103663356 103664194 268310 269148 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 103664834 103665590 269590 270346 NC_000014.9 scf7180000172763 99.21 True fake: scaffold gap size wrong estimation (local) 103669443 103670132 274035 274724 NC_000014.9 scf7180000172763 100.0 True local misassembly 103670512 103671420 274762 275670 NC_000014.9 scf7180000172763 97.47 True fake: scaffold gap size wrong estimation (local) 103671563 103673689 276219 278345 NC_000014.9 scf7180000172763 98.97 True local misassembly 103673910 103674536 278346 278972 NC_000014.9 scf7180000172763 100.0 True relocation, scaffold gap is present, inconsistency = -39792114 63882455 63883170 279005 279718 NC_000014.9 scf7180000172763 99.58 True fake: scaffold gap size wrong estimation (local) 63884881 63886769 281419 283309 NC_000014.9 scf7180000172763 99.74 True fake: scaffold gap size wrong estimation (local) 63887172 63895178 283684 291718 NC_000014.9 scf7180000172763 98.71 True fake: scaffold gap size wrong estimation (local) 63895581 63902216 291967 298680 NC_000014.9 scf7180000172763 99.35 True fake: scaffold gap size wrong estimation (local) 63902958 63903499 299270 299811 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 63903591 63913638 299871 309918 NC_000014.9 scf7180000172763 99.8 True fake: scaffold gap size wrong estimation (local) 63913910 63917552 310124 313766 NC_000014.9 scf7180000172763 99.78 True fake: scaffold gap size wrong estimation (local) 63917735 63923892 313885 320040 NC_000014.9 scf7180000172763 99.4 True fake: scaffold gap size wrong estimation (local) 63925412 63927694 322046 324328 NC_000014.9 scf7180000172763 99.78 True fake: scaffold gap size wrong estimation (local) 63927861 63929525 324598 326262 NC_000014.9 scf7180000172763 99.88 True local misassembly 63929749 63930287 326263 326801 NC_000014.9 scf7180000172763 96.29 True fake: scaffold gap size wrong estimation (local) 63932507 63935917 329063 332473 NC_000014.9 scf7180000172763 99.82 True fake: scaffold gap size wrong estimation (local) 63936148 63939345 332656 335853 NC_000014.9 scf7180000172763 99.75 True fake: scaffold gap size wrong estimation (local) 63939491 63943639 335971 339955 NC_000014.9 scf7180000172763 95.17 True fake: scaffold gap size wrong estimation (local) 63943913 63944750 340346 341169 NC_000014.9 scf7180000172763 97.7 True fake: scaffold gap size wrong estimation (local) 63945659 63946513 342149 343003 NC_000014.9 scf7180000172763 99.77 True indel: indel (<= 5bp) 63946516 63947632 343004 344120 NC_000014.9 scf7180000172763 99.82 True fake: scaffold gap size wrong estimation (local) 63948803 63957254 345244 353639 NC_000014.9 scf7180000172763 98.75 True fake: scaffold gap size wrong estimation (local) 63957442 63959290 353770 355615 NC_000014.9 scf7180000172763 99.03 True fake: scaffold gap size wrong estimation (local) 63959427 63964508 355728 360868 NC_000014.9 scf7180000172763 99.53 True fake: scaffold gap size wrong estimation (local) 63964537 63970654 360969 367155 NC_000014.9 scf7180000172763 98.16 True fake: scaffold gap size wrong estimation (local) 63970876 63973368 367326 369832 NC_000014.9 scf7180000172763 99.92 True fake: not a misassembly (possible transposable element) 53517677 53519436 369853 371612 NC_000014.9 scf7180000172763 100.0 True fake: not a misassembly (possible transposable element) 63974896 63975423 371932 372459 NC_000014.9 scf7180000172763 100.0 True local misassembly 63973647 63985079 372481 383406 NC_000014.9 scf7180000172763 95.04 True fake: scaffold gap size wrong estimation (local) 63985326 63987075 383558 385307 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 63987149 63989531 385387 387769 NC_000014.9 scf7180000172763 99.83 True fake: scaffold gap size wrong estimation (local) 63989845 64004104 388054 402416 NC_000014.9 scf7180000172763 99.39 True fake: scaffold gap size wrong estimation (local) 64004480 64014932 402801 413301 NC_000014.9 scf7180000172763 99.6 True fake: scaffold gap size wrong estimation (local) 64015071 64032590 413404 430974 NC_000014.9 scf7180000172763 97.12 True fake: scaffold gap size wrong estimation (local) 64032945 64035883 431240 434188 NC_000014.9 scf7180000172763 99.66 True fake: scaffold gap size wrong estimation (local) 64036351 64037296 434664 435609 NC_000014.9 scf7180000172763 99.89 True fake: scaffold gap size wrong estimation (local) 64038525 64041607 437137 440119 NC_000014.9 scf7180000172763 96.25 True fake: scaffold gap size wrong estimation (local) 64041755 64043495 440201 441954 NC_000014.9 scf7180000172763 99.88 True fake: scaffold gap size wrong estimation (local) 64043598 64044175 442047 442624 NC_000014.9 scf7180000172763 99.48 True fake: scaffold gap size wrong estimation (local) 64044632 64050814 442963 449245 NC_000014.9 scf7180000172763 98.75 True fake: scaffold gap size wrong estimation (local) 64051006 64068684 449389 467167 NC_000014.9 scf7180000172763 98.18 True fake: scaffold gap size wrong estimation (local) 64068867 64071273 467390 469795 NC_000014.9 scf7180000172763 99.75 True fake: scaffold gap size wrong estimation (local) 64071473 64081920 470061 480437 NC_000014.9 scf7180000172763 98.73 True fake: scaffold gap size wrong estimation (local) 64082050 64086715 480693 485357 NC_000014.9 scf7180000172763 99.79 True fake: scaffold gap size wrong estimation (local) 64087104 64087951 485691 486538 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64088144 64089247 486720 487824 NC_000014.9 scf7180000172763 99.82 True fake: scaffold gap size wrong estimation (local) 64089407 64094075 487928 492596 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 64094315 64099774 492695 498154 NC_000014.9 scf7180000172763 99.95 True fake: scaffold gap size wrong estimation (local) 64100636 64104467 498995 502831 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64104717 64106140 502999 504422 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64106595 64111586 504844 509818 NC_000014.9 scf7180000172763 99.23 True fake: scaffold gap size wrong estimation (local) 64111734 64116520 509920 514700 NC_000014.9 scf7180000172763 99.83 True fake: scaffold gap size wrong estimation (local) 64116641 64118658 514773 516790 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 64118819 64120508 517013 518702 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64120606 64121258 518893 519545 NC_000014.9 scf7180000172763 100.0 True local misassembly 64121396 64122846 519546 520996 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64123017 64123896 521277 522156 NC_000014.9 scf7180000172763 99.89 True fake: scaffold gap size wrong estimation (local) 64124394 64127070 522642 525318 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64127437 64132998 525623 531155 NC_000014.9 scf7180000172763 99.17 True fake: scaffold gap size wrong estimation (local) 64133195 64136135 531287 534153 NC_000014.9 scf7180000172763 97.46 True fake: scaffold gap size wrong estimation (local) 64136309 64139260 534257 537208 NC_000014.9 scf7180000172763 99.97 True fake: scaffold gap size wrong estimation (local) 64139534 64144943 537344 542779 NC_000014.9 scf7180000172763 99.89 True fake: scaffold gap size wrong estimation (local) 64145138 64151421 543103 549089 NC_000014.9 scf7180000172763 95.02 True fake: scaffold gap size wrong estimation (local) 64151519 64154551 549271 552303 NC_000014.9 scf7180000172763 99.93 True fake: scaffold gap size wrong estimation (local) 64155708 64156586 553419 554297 NC_000014.9 scf7180000172763 99.32 True fake: scaffold gap size wrong estimation (local) 64156587 64161090 554495 558998 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 64161741 64163991 559653 561903 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64164376 64171940 562360 569853 NC_000014.9 scf7180000172763 98.94 True fake: scaffold gap size wrong estimation (local) 64172124 64176845 569987 574713 NC_000014.9 scf7180000172763 99.87 True fake: scaffold gap size wrong estimation (local) 64177068 64180521 574961 578414 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64180770 64182387 578648 580265 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64183593 64185531 581410 583350 NC_000014.9 scf7180000172763 99.85 True fake: scaffold gap size wrong estimation (local) 64185736 64189156 583505 586925 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64189278 64199516 587022 597265 NC_000014.9 scf7180000172763 99.99 True fake: scaffold gap size wrong estimation (local) 64199729 64207312 597423 605006 NC_000014.9 scf7180000172763 99.99 True fake: scaffold gap size wrong estimation (local) 64207561 64216794 605152 614386 NC_000014.9 scf7180000172763 99.91 True fake: scaffold gap size wrong estimation (local) 64216973 64230891 614530 628477 NC_000014.9 scf7180000172763 98.23 True fake: not a misassembly (possible transposable element) 74113216 74113991 628502 629277 NC_000014.9 scf7180000172763 100.0 True fake: not a misassembly (possible transposable element) 64230911 64240894 629278 639293 NC_000014.9 scf7180000172763 99.78 True fake: scaffold gap size wrong estimation (local) 64241173 64242167 639559 640553 NC_000014.9 scf7180000172763 100.0 True fake: scaffold gap size wrong estimation (local) 64242442 64245315 640780 643591 NC_000014.9 scf7180000172763 97.69 True fake: scaffold gap size wrong estimation (local) 64245528 64253011 643720 651506 NC_000014.9 scf7180000172763 96.58 True fake: scaffold gap size wrong estimation (local) 64253078 64266980 651766 665544 NC_000014.9 scf7180000172763 97.8 True fake: scaffold gap size wrong estimation (local) 64267153 64273007 665708 671507 NC_000014.9 scf7180000172763 98.51 True relocation, scaffold gap is present, inconsistency = 23785668 88058696 88059845 672677 671528 NC_000014.9 scf7180000172763 98.87 True fake: scaffold gap size wrong estimation (local) 88055577 88057055 675647 674169 NC_000014.9 scf7180000172763 99.46 True fake: scaffold gap size wrong estimation (local) 88053163 88055384 678152 675932 NC_000014.9 scf7180000172763 99.59 True fake: scaffold gap size wrong estimation (local) 88051505 88053028 679827 678304 NC_000014.9 scf7180000172763 99.74 True fake: scaffold gap size wrong estimation (local) 88033351 88051261 697914 680049 NC_000014.9 scf7180000172763 99.47 True fake: scaffold gap size wrong estimation (local) 88019383 88033036 711847 698246 NC_000014.9 scf7180000172763 99.52 True fake: scaffold gap size wrong estimation (local) 88013235 88018822 718010 712409 NC_000014.9 scf7180000172763 99.93 True fake: scaffold gap size wrong estimation (local) 87997606 88013072 733615 718121 NC_000014.9 scf7180000172763 99.74 True fake: scaffold gap size wrong estimation (local) 87980369 87997301 750781 733922 NC_000014.9 scf7180000172763 99.38 True fake: scaffold gap size wrong estimation (local) 87979292 87980128 751772 750936 NC_000014.9 scf7180000172763 99.88 True fake: scaffold gap size wrong estimation (local) 87970895 87979052 760116 751972 NC_000014.9 scf7180000172763 99.68 True fake: scaffold gap size wrong estimation (local) 87959625 87970645 771340 760328 NC_000014.9 scf7180000172763 99.8 True fake: scaffold gap size wrong estimation (local) 87931944 87959484 799020 771422 NC_000014.9 scf7180000172763 99.5 True fake: scaffold gap size wrong estimation (local) 87930281 87931764 800672 799189 NC_000014.9 scf7180000172763 99.39 True fake: scaffold gap size wrong estimation (local) 87927332 87929600 803558 801290 NC_000014.9 scf7180000172763 99.65 True fake: scaffold gap size wrong estimation (local) 87912969 87927205 818227 803958 NC_000014.9 scf7180000172763 98.64 True indel: stretch of mismatches 87907113 87912925 824110 818271 NC_000014.9 scf7180000172763 99.76 True fake: scaffold gap size wrong estimation (local) 87893443 87906915 837690 824297 NC_000014.9 scf7180000172763 99.23 True fake: scaffold gap size wrong estimation (local) 87891275 87893290 839841 837826 NC_000014.9 scf7180000172763 99.9 True fake: scaffold gap size wrong estimation (local) 87878676 87890982 852408 840087 NC_000014.9 scf7180000172763 99.69 True fake: scaffold gap size wrong estimation (local) 87860058 87878466 870916 852515 NC_000014.9 scf7180000172763 99.89 True fake: scaffold gap size wrong estimation (local) 87854636 87858337 876379 872698 NC_000014.9 scf7180000172763 99.35 True fake: scaffold gap size wrong estimation (local) 87850119 87854536 880876 876461 NC_000014.9 scf7180000172763 99.93 True fake: scaffold gap size wrong estimation (local) 87818034 87827675 913004 903367 NC_000014.9 scf7180000172763 99.76 True CONTIG scf7180000172763 913004 misassembled 35172889 35174748 1867 8 NC_000014.9 scf7180000172764 99.84 True fake: scaffold gap size wrong estimation (local) 35171201 35172161 3656 2696 NC_000014.9 scf7180000172764 99.9 True fake: scaffold gap size wrong estimation (local) 35166725 35170864 8050 3911 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 35153221 35165852 21594 8866 NC_000014.9 scf7180000172764 96.15 True fake: scaffold gap size wrong estimation (local) 35149241 35151671 25494 23064 NC_000014.9 scf7180000172764 99.84 True fake: scaffold gap size wrong estimation (local) 35146099 35148930 28611 25780 NC_000014.9 scf7180000172764 99.82 True fake: scaffold gap size wrong estimation (local) 35142745 35145475 31891 29202 NC_000014.9 scf7180000172764 98.21 True fake: scaffold gap size wrong estimation (local) 35136648 35142312 37943 32294 NC_000014.9 scf7180000172764 99.61 True fake: scaffold gap size wrong estimation (local) 35133120 35136373 41436 38192 NC_000014.9 scf7180000172764 99.62 True fake: scaffold gap size wrong estimation (local) 35132210 35132792 42291 41709 NC_000014.9 scf7180000172764 99.66 True fake: scaffold gap size wrong estimation (local) 35130187 35131555 44273 42904 NC_000014.9 scf7180000172764 98.95 True fake: scaffold gap size wrong estimation (local) 35121348 35130040 53099 44360 NC_000014.9 scf7180000172764 99.9 True fake: scaffold gap size wrong estimation (local) 35120501 35121134 53977 53344 NC_000014.9 scf7180000172764 99.84 True fake: scaffold gap size wrong estimation (local) 35119075 35119865 55322 54532 NC_000014.9 scf7180000172764 99.75 True fake: scaffold gap size wrong estimation (local) 35117966 35118658 56341 55649 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35115891 35117803 58533 56621 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 35115159 35115704 59162 58617 NC_000014.9 scf7180000172764 99.82 True fake: scaffold gap size wrong estimation (local) 35111238 35114810 63089 59528 NC_000014.9 scf7180000172764 99.44 True fake: scaffold gap size wrong estimation (local) 35109247 35111083 65098 63262 NC_000014.9 scf7180000172764 99.89 True fake: scaffold gap size wrong estimation (local) 35106885 35109095 67425 65196 NC_000014.9 scf7180000172764 99.59 True fake: scaffold gap size wrong estimation (local) 35102285 35105286 72069 69050 NC_000014.9 scf7180000172764 99.93 True fake: scaffold gap size wrong estimation (local) 35101248 35102028 73127 72347 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35099952 35101044 74359 73267 NC_000014.9 scf7180000172764 99.73 True fake: scaffold gap size wrong estimation (local) 35098465 35099767 75777 74473 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 35095856 35097000 78472 77328 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35094760 35095669 79860 78951 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35093854 35094481 80569 79942 NC_000014.9 scf7180000172764 96.66 True indel: indel (> 5bp) 35093189 35093788 81169 80570 NC_000014.9 scf7180000172764 99.83 True fake: scaffold gap size wrong estimation (local) 35091839 35092495 82533 81877 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 35087630 35089696 86715 84649 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 35086771 35087445 87710 87036 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 35084451 35086288 90013 88031 NC_000014.9 scf7180000172764 99.34 True fake: scaffold gap size wrong estimation (local) 35080715 35084200 93525 90151 NC_000014.9 scf7180000172764 96.7 True fake: scaffold gap size wrong estimation (local) 35078609 35080574 95607 93638 NC_000014.9 scf7180000172764 99.8 True fake: scaffold gap size wrong estimation (local) 35077726 35078485 96574 95815 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35076579 35077473 97646 96752 NC_000014.9 scf7180000172764 99.44 True fake: scaffold gap size wrong estimation (local) 35074592 35075404 99569 98757 NC_000014.9 scf7180000172764 99.88 True fake: scaffold gap size wrong estimation (local) 35072200 35074191 102069 99818 NC_000014.9 scf7180000172764 99.79 True fake: scaffold gap size wrong estimation (local) 35071225 35072053 102970 102142 NC_000014.9 scf7180000172764 97.1 True fake: scaffold gap size wrong estimation (local) 35067909 35069294 107580 106195 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35066686 35067670 111395 110411 NC_000014.9 scf7180000172764 99.9 True fake: scaffold gap size wrong estimation (local) 35061692 35063093 116050 114650 NC_000014.9 scf7180000172764 99.93 True fake: scaffold gap size wrong estimation (local) 35059991 35061468 118107 116630 NC_000014.9 scf7180000172764 99.93 True fake: scaffold gap size wrong estimation (local) 35058284 35059009 120002 119277 NC_000014.9 scf7180000172764 96.97 True local misassembly 35056452 35058169 121720 120003 NC_000014.9 scf7180000172764 97.79 True local misassembly 35055467 35056264 122518 121721 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35052450 35054785 125704 123420 NC_000014.9 scf7180000172764 96.8 True fake: scaffold gap size wrong estimation (local) 35050264 35051522 127874 126616 NC_000014.9 scf7180000172764 99.92 True fake: scaffold gap size wrong estimation (local) 35049142 35049761 129737 129118 NC_000014.9 scf7180000172764 96.61 True local misassembly 35047786 35048905 130857 129738 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35044910 35047555 133791 131148 NC_000014.9 scf7180000172764 99.92 True fake: scaffold gap size wrong estimation (local) 35041115 35044154 137536 134416 NC_000014.9 scf7180000172764 99.7 True fake: scaffold gap size wrong estimation (local) 35040300 35040881 138274 137693 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35037596 35038578 141017 140035 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35036540 35037323 142443 141660 NC_000014.9 scf7180000172764 97.45 True fake: scaffold gap size wrong estimation (local) 35033049 35034287 146221 144983 NC_000014.9 scf7180000172764 99.68 True fake: scaffold gap size wrong estimation (local) 35031371 35032706 148354 147019 NC_000014.9 scf7180000172764 96.18 True fake: not a misassembly (possible transposable element) 31394755 31397530 151611 148836 NC_000014.9 scf7180000172764 99.78 True fake: not a misassembly (possible transposable element) 35027694 35029911 153829 151612 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 30655888 30658315 156286 153859 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 35024808 35025950 157429 156287 NC_000014.9 scf7180000172764 99.91 True local misassembly 35026056 35026766 158194 157484 NC_000014.9 scf7180000172764 99.86 True fake: scaffold gap size wrong estimation (local) 35024241 35024804 159994 159431 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35020134 35023591 164177 160682 NC_000014.9 scf7180000172764 98.2 True fake: scaffold gap size wrong estimation (local) 35017071 35019955 167169 164285 NC_000014.9 scf7180000172764 99.97 True fake: scaffold gap size wrong estimation (local) 35014548 35016844 169643 167402 NC_000014.9 scf7180000172764 97.5 True fake: scaffold gap size wrong estimation (local) 35012233 35014277 171914 169880 NC_000014.9 scf7180000172764 99.51 True fake: scaffold gap size wrong estimation (local) 35010349 35012072 173773 172050 NC_000014.9 scf7180000172764 98.78 True fake: scaffold gap size wrong estimation (local) 35009155 35009930 175929 175154 NC_000014.9 scf7180000172764 99.87 True fake: scaffold gap size wrong estimation (local) 35007758 35008907 177340 176191 NC_000014.9 scf7180000172764 99.91 True local misassembly 35006083 35007616 178874 177341 NC_000014.9 scf7180000172764 99.93 True fake: scaffold gap size wrong estimation (local) 35004184 35005874 181024 179334 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 35002758 35003919 182382 181190 NC_000014.9 scf7180000172764 99.06 True fake: scaffold gap size wrong estimation (local) 35001255 35001979 183983 183259 NC_000014.9 scf7180000172764 97.24 True indel: indel (> 5bp) 35000449 35001225 184760 183984 NC_000014.9 scf7180000172764 97.17 True local misassembly 34999177 35000316 185900 184761 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 34995172 34998591 189896 186452 NC_000014.9 scf7180000172764 99.8 True fake: scaffold gap size wrong estimation (local) 34991398 34994935 193529 190071 NC_000014.9 scf7180000172764 95.41 True fake: scaffold gap size wrong estimation (local) 34989454 34991121 195557 193890 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 34988603 34989298 196367 195672 NC_000014.9 scf7180000172764 99.86 True fake: scaffold gap size wrong estimation (local) 34981195 34988316 203841 196627 NC_000014.9 scf7180000172764 96.82 True fake: scaffold gap size wrong estimation (local) 34980187 34981050 204895 204032 NC_000014.9 scf7180000172764 99.65 True fake: scaffold gap size wrong estimation (local) 34979404 34980037 205620 204987 NC_000014.9 scf7180000172764 99.84 True fake: scaffold gap size wrong estimation (local) 34978534 34979219 206337 205652 NC_000014.9 scf7180000172764 98.98 True fake: scaffold gap size wrong estimation (local) 34976620 34977146 208298 207772 NC_000014.9 scf7180000172764 95.64 True local misassembly 34975099 34976432 209632 208299 NC_000014.9 scf7180000172764 99.93 True fake: scaffold gap size wrong estimation (local) 34973559 34974725 211445 210279 NC_000014.9 scf7180000172764 99.74 True fake: scaffold gap size wrong estimation (local) 34972571 34973183 212356 211744 NC_000014.9 scf7180000172764 96.57 True indel: indel (> 5bp) 34971281 34972536 213612 212357 NC_000014.9 scf7180000172764 99.92 True fake: scaffold gap size wrong estimation (local) 34967483 34970528 217475 214409 NC_000014.9 scf7180000172764 96.97 True fake: scaffold gap size wrong estimation (local) 34963318 34967261 221499 217573 NC_000014.9 scf7180000172764 99.49 True fake: scaffold gap size wrong estimation (local) 34961353 34962144 223604 222813 NC_000014.9 scf7180000172764 96.97 True fake: scaffold gap size wrong estimation (local) 34959141 34960633 225777 224285 NC_000014.9 scf7180000172764 98.66 True local misassembly 34957536 34958682 226924 225778 NC_000014.9 scf7180000172764 99.83 True relocation, scaffold gap is present, inconsistency = 40244906 75203640 75205286 226976 228622 NC_000014.9 scf7180000172764 99.94 True fake: not a misassembly (possible transposable element) 75217340 75218672 229091 230423 NC_000014.9 scf7180000172764 99.77 True fake: not a misassembly (possible transposable element) 75206110 75207952 230474 232402 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 75208136 75209273 232633 233770 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75209620 75210579 234315 235274 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75210708 75211441 235418 236151 NC_000014.9 scf7180000172764 99.73 True fake: not a misassembly (possible transposable element) 34954606 34955493 237708 236821 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 75212258 75217036 237767 242545 NC_000014.9 scf7180000172764 99.92 True fake: not a misassembly (possible transposable element) 34955963 34956636 243338 242665 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 75219537 75220606 245969 247038 NC_000014.9 scf7180000172764 98.13 True fake: scaffold gap size wrong estimation (local) 75221500 75223123 248066 249689 NC_000014.9 scf7180000172764 99.94 True relocation, scaffold gap is present, inconsistency = 40267292 34953677 34954184 250220 249713 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 70795264 70795912 250869 250221 NC_000014.9 scf7180000172764 100.0 True fake: not a misassembly (possible transposable element) 34948924 34949743 251862 251043 NC_000014.9 scf7180000172764 100.0 True local misassembly 34949757 34950598 252724 251883 NC_000014.9 scf7180000172764 100.0 True relocation, scaffold gap is present, inconsistency = 40273876 75224525 75225095 252775 253345 NC_000014.9 scf7180000172764 99.82 True fake: scaffold gap size wrong estimation (local) 75226331 75227814 254843 256326 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75227998 75228662 256496 257160 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75228852 75235084 257396 263623 NC_000014.9 scf7180000172764 98.85 True fake: scaffold gap size wrong estimation (local) 75235519 75236339 263787 264607 NC_000014.9 scf7180000172764 99.15 True fake: scaffold gap size wrong estimation (local) 75237385 75241407 265676 269692 NC_000014.9 scf7180000172764 99.75 True fake: scaffold gap size wrong estimation (local) 75242473 75243140 270708 271375 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 75244144 75250527 272274 278449 NC_000014.9 scf7180000172764 96.46 True indel: stretch of mismatches 75250737 75251919 278659 279841 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75252932 75253796 280906 281770 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75254055 75261067 281978 289082 NC_000014.9 scf7180000172764 99.01 True fake: scaffold gap size wrong estimation (local) 75261582 75262395 289609 290422 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75262525 75264594 290541 292547 NC_000014.9 scf7180000172764 96.83 True fake: scaffold gap size wrong estimation (local) 75265703 75268129 293577 295969 NC_000014.9 scf7180000172764 98.55 True fake: scaffold gap size wrong estimation (local) 75268199 75270297 296051 298092 NC_000014.9 scf7180000172764 97.02 True fake: scaffold gap size wrong estimation (local) 75273094 75273939 299497 300342 NC_000014.9 scf7180000172764 99.65 True indel: indel (<= 5bp) 75273943 75276383 300343 302783 NC_000014.9 scf7180000172764 99.8 True fake: scaffold gap size wrong estimation (local) 75276384 75280704 302805 307125 NC_000014.9 scf7180000172764 99.07 True indel: indel (<= 5bp) 75280706 75282879 307126 309299 NC_000014.9 scf7180000172764 99.86 True indel: indel (> 5bp) 75282890 75284192 309300 310602 NC_000014.9 scf7180000172764 98.16 True fake: scaffold gap size wrong estimation (local) 75285298 75289329 311700 315740 NC_000014.9 scf7180000172764 99.77 True fake: scaffold gap size wrong estimation (local) 75289450 75296586 315827 322937 NC_000014.9 scf7180000172764 99.56 True fake: scaffold gap size wrong estimation (local) 75296846 75300525 323219 326872 NC_000014.9 scf7180000172764 98.33 True fake: scaffold gap size wrong estimation (local) 75300734 75302668 327085 329019 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 75304174 75304926 331374 332127 NC_000014.9 scf7180000172764 99.87 True relocation, scaffold gap is present, inconsistency = 38120888 37181717 37182523 333696 332890 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 37179754 37180906 335495 334343 NC_000014.9 scf7180000172764 99.83 True fake: scaffold gap size wrong estimation (local) 37177861 37179552 338072 336176 NC_000014.9 scf7180000172764 98.16 True fake: scaffold gap size wrong estimation (local) 37176721 37177660 339304 338384 NC_000014.9 scf7180000172764 97.79 True fake: scaffold gap size wrong estimation (local) 37171142 37176415 344768 339489 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 37165263 37170842 350822 345284 NC_000014.9 scf7180000172764 98.94 True fake: scaffold gap size wrong estimation (local) 37163298 37165167 352856 350987 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 37157104 37161686 358905 354427 NC_000014.9 scf7180000172764 97.46 True fake: scaffold gap size wrong estimation (local) 37156162 37157027 360172 359307 NC_000014.9 scf7180000172764 99.88 True fake: scaffold gap size wrong estimation (local) 37154863 37156001 361436 360320 NC_000014.9 scf7180000172764 97.68 True fake: scaffold gap size wrong estimation (local) 37148055 37154657 368323 361705 NC_000014.9 scf7180000172764 99.76 True fake: scaffold gap size wrong estimation (local) 37137271 37147854 379023 368433 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 37102984 37137074 414029 379163 NC_000014.9 scf7180000172764 98.03 True fake: scaffold gap size wrong estimation (local) 37100330 37102241 416641 414730 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 37099034 37100028 418119 417125 NC_000014.9 scf7180000172764 99.8 True fake: scaffold gap size wrong estimation (local) 37097897 37098723 419330 418504 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 37091429 37096433 425876 420906 NC_000014.9 scf7180000172764 99.22 True fake: scaffold gap size wrong estimation (local) 37086075 37091314 431217 425978 NC_000014.9 scf7180000172764 99.79 True fake: scaffold gap size wrong estimation (local) 37072188 37085899 445485 431307 NC_000014.9 scf7180000172764 95.32 True fake: scaffold gap size wrong estimation (local) 37069152 37071934 448475 445693 NC_000014.9 scf7180000172764 99.96 True fake: scaffold gap size wrong estimation (local) 37056490 37068917 461053 448630 NC_000014.9 scf7180000172764 99.91 True fake: scaffold gap size wrong estimation (local) 37040441 37056238 477036 461238 NC_000014.9 scf7180000172764 99.64 True fake: scaffold gap size wrong estimation (local) 37032672 37039991 484673 477483 NC_000014.9 scf7180000172764 98.11 True fake: scaffold gap size wrong estimation (local) 37016644 37032351 500734 485012 NC_000014.9 scf7180000172764 99.85 True fake: scaffold gap size wrong estimation (local) 37011102 37015099 506184 502187 NC_000014.9 scf7180000172764 99.92 True fake: scaffold gap size wrong estimation (local) 37009415 37010677 508051 506789 NC_000014.9 scf7180000172764 98.34 True local misassembly 37008760 37009296 508588 508052 NC_000014.9 scf7180000172764 100.0 True indel: indel (<= 5bp) 37007956 37008759 509393 508590 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 37006650 37007449 510614 509815 NC_000014.9 scf7180000172764 99.25 True indel: indel (<= 5bp) 37005942 37006648 511321 510615 NC_000014.9 scf7180000172764 100.0 True indel: indel (<= 5bp) 37004937 37005940 512325 511322 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 36990907 37004936 528612 514583 NC_000014.9 scf7180000172764 99.84 True indel: indel (<= 5bp) 36989888 36990904 529629 528613 NC_000014.9 scf7180000172764 99.71 True indel: indel (<= 5bp) 36985264 36989503 534251 530012 NC_000014.9 scf7180000172764 99.91 True local misassembly 36982690 36984873 536435 534252 NC_000014.9 scf7180000172764 98.76 True indel: indel (> 5bp) 36981600 36982650 537486 536436 NC_000014.9 scf7180000172764 99.52 True fake: scaffold gap size wrong estimation (local) 36924612 36980350 594749 538733 NC_000014.9 scf7180000172764 99.43 True fake: scaffold gap size wrong estimation (local) 36903630 36923809 615594 595445 NC_000014.9 scf7180000172764 99.73 True fake: scaffold gap size wrong estimation (local) 36898648 36903395 620471 615724 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 36873560 36892184 646944 628338 NC_000014.9 scf7180000172764 98.98 True fake: scaffold gap size wrong estimation (local) 36862535 36873355 657915 647065 NC_000014.9 scf7180000172764 99.64 True fake: scaffold gap size wrong estimation (local) 36815081 36862059 705534 658299 NC_000014.9 scf7180000172764 99.05 True fake: scaffold gap size wrong estimation (local) 36794783 36814378 725695 706069 NC_000014.9 scf7180000172764 99.31 True fake: scaffold gap size wrong estimation (local) 36789981 36794560 730382 725795 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 36783009 36789670 737283 730622 NC_000014.9 scf7180000172764 99.98 True fake: scaffold gap size wrong estimation (local) 36779652 36782705 740669 737578 NC_000014.9 scf7180000172764 99.28 True fake: scaffold gap size wrong estimation (local) 36777166 36779284 743137 741019 NC_000014.9 scf7180000172764 99.91 True fake: scaffold gap size wrong estimation (local) 36776410 36777029 743896 743277 NC_000014.9 scf7180000172764 99.84 True fake: scaffold gap size wrong estimation (local) 36770144 36776236 750098 744006 NC_000014.9 scf7180000172764 99.95 True fake: not a misassembly (possible transposable element) 58486342 58487413 750099 751170 NC_000014.9 scf7180000172764 99.63 True fake: not a misassembly (possible transposable element) 36764567 36770180 756874 751261 NC_000014.9 scf7180000172764 99.89 True fake: scaffold gap size wrong estimation (local) 36747150 36764535 774725 757031 NC_000014.9 scf7180000172764 96.27 True fake: scaffold gap size wrong estimation (local) 36746091 36749079 779188 776201 NC_000014.9 scf7180000172764 99.87 True fake: scaffold gap size wrong estimation (local) 36739653 36744973 785634 780046 NC_000014.9 scf7180000172764 95.44 True fake: scaffold gap size wrong estimation (local) 36736212 36739528 789411 786095 NC_000014.9 scf7180000172764 100.0 True fake: scaffold gap size wrong estimation (local) 36731225 36735821 794508 789910 NC_000014.9 scf7180000172764 99.89 True fake: scaffold gap size wrong estimation (local) 36727655 36731003 798008 794660 NC_000014.9 scf7180000172764 99.97 True fake: scaffold gap size wrong estimation (local) 36725502 36727493 800107 798116 NC_000014.9 scf7180000172764 99.95 True fake: scaffold gap size wrong estimation (local) 36705214 36725268 820406 800248 NC_000014.9 scf7180000172764 99.57 True fake: scaffold gap size wrong estimation (local) 36699229 36705156 826337 820511 NC_000014.9 scf7180000172764 98.25 True relocation, scaffold gap is present, inconsistency = 1669639 35026896 35027578 829059 828349 NC_000014.9 scf7180000172764 98.7 True CONTIG scf7180000172764 829064 misassembled 70310930 70311761 2568 3399 NC_000014.9 scf7180000172765 100.0 True fake: not a misassembly (possible transposable element) 71772505 71774254 3448 5197 NC_000014.9 scf7180000172765 99.94 True fake: not a misassembly (possible transposable element) 70313608 70314566 5218 6176 NC_000014.9 scf7180000172765 99.9 True relocation, inconsistency = 1460395 71774962 71776273 6177 7513 NC_000014.9 scf7180000172765 99.62 True relocation, scaffold gap is present, inconsistency = 34837 71811163 71814558 7566 10917 NC_000014.9 scf7180000172765 98.64 True fake: scaffold gap size wrong estimation (local) 71814754 71816490 11198 12934 NC_000014.9 scf7180000172765 99.83 True relocation, scaffold gap is present, inconsistency = 29610295 42203124 42203653 14269 13740 NC_000014.9 scf7180000172765 99.81 True fake: scaffold gap size wrong estimation (local) 42189804 42201724 27707 15707 NC_000014.9 scf7180000172765 99.92 True fake: scaffold gap size wrong estimation (local) 42182032 42190004 36095 28124 NC_000014.9 scf7180000172765 99.85 True fake: scaffold gap size wrong estimation (local) 42171218 42181771 46899 36346 NC_000014.9 scf7180000172765 99.94 True fake: scaffold gap size wrong estimation (local) 42167255 42170658 51119 47716 NC_000014.9 scf7180000172765 99.71 True fake: scaffold gap size wrong estimation (local) 42166168 42166752 52072 51488 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 42154187 42166014 64003 52243 NC_000014.9 scf7180000172765 99.13 True fake: scaffold gap size wrong estimation (local) 42143153 42151194 77130 69089 NC_000014.9 scf7180000172765 99.84 True fake: scaffold gap size wrong estimation (local) 42142372 42142965 77821 77228 NC_000014.9 scf7180000172765 99.83 True fake: scaffold gap size wrong estimation (local) 42121569 42142114 98650 78138 NC_000014.9 scf7180000172765 99.68 True fake: scaffold gap size wrong estimation (local) 42117714 42121289 102388 98813 NC_000014.9 scf7180000172765 99.8 True indel: indel (<= 5bp) 42098413 42117597 121686 102504 NC_000014.9 scf7180000172765 99.88 True fake: scaffold gap size wrong estimation (local) 42097264 42098185 122770 121849 NC_000014.9 scf7180000172765 99.89 True fake: scaffold gap size wrong estimation (local) 42093023 42096964 126995 123054 NC_000014.9 scf7180000172765 99.92 True fake: scaffold gap size wrong estimation (local) 42069461 42092739 150415 127150 NC_000014.9 scf7180000172765 99.74 True fake: scaffold gap size wrong estimation (local) 42067777 42069291 152007 150493 NC_000014.9 scf7180000172765 99.8 True fake: scaffold gap size wrong estimation (local) 42064884 42067776 154925 152033 NC_000014.9 scf7180000172765 99.93 True fake: scaffold gap size wrong estimation (local) 42064326 42064883 155684 155127 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 42062795 42064001 157224 156018 NC_000014.9 scf7180000172765 99.92 True fake: scaffold gap size wrong estimation (local) 42060351 42062542 159639 157448 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 42051643 42060185 168656 160114 NC_000014.9 scf7180000172765 99.81 True fake: scaffold gap size wrong estimation (local) 42048739 42051128 171555 169184 NC_000014.9 scf7180000172765 99.24 True fake: scaffold gap size wrong estimation (local) 42043567 42048505 176677 171824 NC_000014.9 scf7180000172765 98.21 True fake: scaffold gap size wrong estimation (local) 42038728 42043303 181434 176859 NC_000014.9 scf7180000172765 99.96 True fake: scaffold gap size wrong estimation (local) 42028338 42038501 191795 181711 NC_000014.9 scf7180000172765 99.14 True fake: scaffold gap size wrong estimation (local) 42024240 42028181 195869 191928 NC_000014.9 scf7180000172765 99.95 True fake: scaffold gap size wrong estimation (local) 42023374 42024056 196689 196007 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 42017434 42023109 202542 196867 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 42011007 42017156 212102 205953 NC_000014.9 scf7180000172765 99.97 True fake: scaffold gap size wrong estimation (local) 42006987 42010538 216080 212470 NC_000014.9 scf7180000172765 99.58 True fake: scaffold gap size wrong estimation (local) 41977063 42006792 245962 216257 NC_000014.9 scf7180000172765 99.74 True fake: scaffold gap size wrong estimation (local) 41966034 41976334 256925 246631 NC_000014.9 scf7180000172765 99.83 True relocation, scaffold gap is present, inconsistency = 24227199 66206263 66229323 259655 283379 NC_000014.9 scf7180000172765 97.37 True fake: scaffold gap size wrong estimation (local) 66229550 66242730 283571 296732 NC_000014.9 scf7180000172765 99.84 True fake: scaffold gap size wrong estimation (local) 66242851 66247154 296755 301147 NC_000014.9 scf7180000172765 99.88 True fake: scaffold gap size wrong estimation (local) 66247350 66250445 301252 304347 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66250707 66278012 304560 331824 NC_000014.9 scf7180000172765 99.81 True fake: scaffold gap size wrong estimation (local) 66278627 66283043 332370 336786 NC_000014.9 scf7180000172765 99.95 True fake: scaffold gap size wrong estimation (local) 66283344 66286254 337063 339973 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66286347 66289260 340046 342985 NC_000014.9 scf7180000172765 99.93 True fake: scaffold gap size wrong estimation (local) 66290583 66296171 344154 349732 NC_000014.9 scf7180000172765 99.79 True fake: scaffold gap size wrong estimation (local) 66296145 66296686 350290 350831 NC_000014.9 scf7180000172765 99.82 True local misassembly 66296884 66297539 350832 351487 NC_000014.9 scf7180000172765 96.65 True fake: scaffold gap size wrong estimation (local) 66300313 66302064 354904 356655 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66302647 66327601 357211 382644 NC_000014.9 scf7180000172765 97.64 True fake: scaffold gap size wrong estimation (local) 66327875 66333961 382849 388920 NC_000014.9 scf7180000172765 99.41 True fake: scaffold gap size wrong estimation (local) 66335069 66335786 390211 390928 NC_000014.9 scf7180000172765 99.3 True indel: indel (> 5bp) 66335846 66336365 390929 391448 NC_000014.9 scf7180000172765 96.15 True fake: scaffold gap size wrong estimation (local) 66336971 66337736 391728 392493 NC_000014.9 scf7180000172765 99.87 True fake: scaffold gap size wrong estimation (local) 66338530 66343417 393274 398161 NC_000014.9 scf7180000172765 99.59 True fake: scaffold gap size wrong estimation (local) 66344201 66347536 398942 402276 NC_000014.9 scf7180000172765 99.94 True fake: scaffold gap size wrong estimation (local) 66347846 66358058 402547 412775 NC_000014.9 scf7180000172765 99.95 True fake: scaffold gap size wrong estimation (local) 66358318 66371299 412903 425884 NC_000014.9 scf7180000172765 99.98 True fake: scaffold gap size wrong estimation (local) 66371518 66386887 426072 441417 NC_000014.9 scf7180000172765 99.83 True fake: scaffold gap size wrong estimation (local) 66387101 66396672 441482 451140 NC_000014.9 scf7180000172765 99.04 True fake: scaffold gap size wrong estimation (local) 66397874 66414462 452177 468736 NC_000014.9 scf7180000172765 99.77 True fake: not a misassembly (possible transposable element) 94181252 94182369 469879 468762 NC_000014.9 scf7180000172765 100.0 True fake: not a misassembly (possible transposable element) 66414422 66460382 469880 516367 NC_000014.9 scf7180000172765 98.78 True fake: scaffold gap size wrong estimation (local) 66460486 66461207 516412 517133 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66461449 66462696 517400 518647 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66462990 66463579 518864 519453 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66463790 66473934 519615 529861 NC_000014.9 scf7180000172765 99.09 True fake: scaffold gap size wrong estimation (local) 66475439 66492364 531153 548254 NC_000014.9 scf7180000172765 98.1 True fake: scaffold gap size wrong estimation (local) 66492613 66504450 548451 560250 NC_000014.9 scf7180000172765 99.65 True fake: scaffold gap size wrong estimation (local) 66504826 66516026 560646 572391 NC_000014.9 scf7180000172765 95.59 True fake: scaffold gap size wrong estimation (local) 66516237 66516906 572579 573248 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66517138 66524909 573443 581203 NC_000014.9 scf7180000172765 99.6 True fake: scaffold gap size wrong estimation (local) 66525983 66526629 582153 582797 NC_000014.9 scf7180000172765 99.07 True fake: scaffold gap size wrong estimation (local) 66527039 66527879 583213 584053 NC_000014.9 scf7180000172765 99.76 True fake: scaffold gap size wrong estimation (local) 66528200 66538037 584271 594252 NC_000014.9 scf7180000172765 98.95 True fake: not a misassembly (possible transposable element) 71776299 71778160 594303 596164 NC_000014.9 scf7180000172765 100.0 True fake: not a misassembly (possible transposable element) 66537898 66539422 596198 597722 NC_000014.9 scf7180000172765 99.74 True fake: scaffold gap size wrong estimation (local) 66539697 66540832 598013 599148 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 66541191 66544611 599724 603144 NC_000014.9 scf7180000172765 100.0 True relocation, scaffold gap is present, inconsistency = 5234204 71778866 71782117 603195 606446 NC_000014.9 scf7180000172765 99.78 True fake: scaffold gap size wrong estimation (local) 71782243 71785654 607122 610533 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 71785740 71788700 612242 615202 NC_000014.9 scf7180000172765 100.0 True relocation, scaffold gap is present, inconsistency = -5240299 66548458 66549927 615259 616728 NC_000014.9 scf7180000172765 99.52 True fake: scaffold gap size wrong estimation (local) 66550073 66550579 616970 617476 NC_000014.9 scf7180000172765 100.0 True relocation, inconsistency = 5238091 71788671 71790767 617477 619573 NC_000014.9 scf7180000172765 99.9 True fake: scaffold gap size wrong estimation (local) 71791322 71792924 620588 622190 NC_000014.9 scf7180000172765 99.88 True indel: indel (> 5bp) 71792937 71794371 622191 623625 NC_000014.9 scf7180000172765 98.05 True indel: indel (> 5bp) 71794372 71795058 623645 624331 NC_000014.9 scf7180000172765 99.13 True fake: scaffold gap size wrong estimation (local) 71795059 71796407 624964 626312 NC_000014.9 scf7180000172765 99.93 True fake: scaffold gap size wrong estimation (local) 71797480 71800525 627564 630561 NC_000014.9 scf7180000172765 98.28 True indel: stretch of mismatches 71800579 71802017 630615 632053 NC_000014.9 scf7180000172765 99.86 True fake: scaffold gap size wrong estimation (local) 71802291 71803127 632196 633032 NC_000014.9 scf7180000172765 99.88 True fake: scaffold gap size wrong estimation (local) 71803367 71805473 633382 635488 NC_000014.9 scf7180000172765 99.95 True fake: scaffold gap size wrong estimation (local) 71805910 71806922 636048 637060 NC_000014.9 scf7180000172765 99.61 True relocation, scaffold gap is present, inconsistency = -14702581 57105185 57105764 637904 638483 NC_000014.9 scf7180000172765 99.66 True fake: scaffold gap size wrong estimation (local) 57107425 57108384 639892 640851 NC_000014.9 scf7180000172765 100.0 True relocation, scaffold gap is present, inconsistency = -28937200 28173836 28178085 643503 647752 NC_000014.9 scf7180000172765 99.88 True fake: scaffold gap size wrong estimation (local) 28179911 28184994 649339 654422 NC_000014.9 scf7180000172765 99.94 True fake: scaffold gap size wrong estimation (local) 28184995 28185651 654553 655209 NC_000014.9 scf7180000172765 99.85 True fake: scaffold gap size wrong estimation (local) 28186096 28188474 656015 658393 NC_000014.9 scf7180000172765 99.87 True relocation, scaffold gap is present, inconsistency = 4465074 32653593 32654696 659523 658414 NC_000014.9 scf7180000172765 99.38 True relocation, inconsistency = 39161741 71816438 71819343 659524 662442 NC_000014.9 scf7180000172765 99.86 True fake: scaffold gap size wrong estimation (local) 71819448 71822404 662548 665532 NC_000014.9 scf7180000172765 97.84 True fake: scaffold gap size wrong estimation (local) 71822591 71827542 666708 671592 NC_000014.9 scf7180000172765 98.44 True fake: scaffold gap size wrong estimation (local) 71827711 71832041 671697 676042 NC_000014.9 scf7180000172765 99.72 True fake: scaffold gap size wrong estimation (local) 71832238 71837150 676164 681118 NC_000014.9 scf7180000172765 99.65 True fake: scaffold gap size wrong estimation (local) 71838346 71839162 682219 683035 NC_000014.9 scf7180000172765 99.88 True local misassembly 71839356 71839931 683036 683611 NC_000014.9 scf7180000172765 96.53 True fake: scaffold gap size wrong estimation (local) 71848975 71851890 694039 696976 NC_000014.9 scf7180000172765 99.41 True fake: scaffold gap size wrong estimation (local) 71852120 71852978 697183 698040 NC_000014.9 scf7180000172765 99.53 True fake: scaffold gap size wrong estimation (local) 71853223 71853810 698163 698750 NC_000014.9 scf7180000172765 99.83 True fake: scaffold gap size wrong estimation (local) 71853916 71858416 699010 703511 NC_000014.9 scf7180000172765 99.4 True fake: scaffold gap size wrong estimation (local) 71858747 71872678 703812 718031 NC_000014.9 scf7180000172765 97.2 True fake: scaffold gap size wrong estimation (local) 71877208 71878334 722760 723886 NC_000014.9 scf7180000172765 99.56 True fake: scaffold gap size wrong estimation (local) 71878557 71894836 724060 740394 NC_000014.9 scf7180000172765 99.45 True fake: scaffold gap size wrong estimation (local) 71895411 71897551 740927 743067 NC_000014.9 scf7180000172765 99.72 True fake: scaffold gap size wrong estimation (local) 71897979 71915095 743452 760765 NC_000014.9 scf7180000172765 98.75 True fake: scaffold gap size wrong estimation (local) 71915152 71918037 760823 763708 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 71918220 71926376 763885 772050 NC_000014.9 scf7180000172765 99.67 True fake: scaffold gap size wrong estimation (local) 71926602 71927682 772264 773344 NC_000014.9 scf7180000172765 100.0 True fake: scaffold gap size wrong estimation (local) 71927933 71930795 773587 776449 NC_000014.9 scf7180000172765 99.9 True fake: scaffold gap size wrong estimation (local) 71931009 71940638 776656 786251 NC_000014.9 scf7180000172765 99.45 True fake: scaffold gap size wrong estimation (local) 71941424 71964373 787227 810160 NC_000014.9 scf7180000172765 99.71 True fake: not a misassembly (possible transposable element) 51793119 51794593 811655 810181 NC_000014.9 scf7180000172765 99.8 True fake: not a misassembly (possible transposable element) 71964407 71968870 811940 816401 NC_000014.9 scf7180000172765 99.91 True fake: scaffold gap size wrong estimation (local) 71969189 71971918 816649 819378 NC_000014.9 scf7180000172765 99.96 True fake: scaffold gap size wrong estimation (local) 71972065 71975538 819514 823013 NC_000014.9 scf7180000172765 99.57 True relocation, scaffold gap is present, inconsistency = -5668562 66307591 66308255 823628 824292 NC_000014.9 scf7180000172765 100.0 True relocation, scaffold gap is present, inconsistency = 48027294 18279176 18279849 825413 824740 NC_000014.9 scf7180000172765 99.85 True fake: scaffold gap size wrong estimation (local) 18275684 18276664 828478 827498 NC_000014.9 scf7180000172765 100.0 True CONTIG scf7180000172765 830625 misassembled 45789377 45792406 3006 15 NC_000014.9 scf7180000172766 98.64 True fake: scaffold gap size wrong estimation (local) 45780501 45789276 13171 4804 NC_000014.9 scf7180000172766 95.05 True fake: scaffold gap size wrong estimation (local) 45771472 45780195 22231 13508 NC_000014.9 scf7180000172766 99.89 True fake: scaffold gap size wrong estimation (local) 45768136 45770049 25471 23558 NC_000014.9 scf7180000172766 100.0 True relocation, inconsistency = 16863015 62633141 62634358 25548 26765 NC_000014.9 scf7180000172766 99.43 True fake: scaffold gap size wrong estimation (local) 62635089 62636587 27627 29122 NC_000014.9 scf7180000172766 99.4 True relocation, scaffold gap is present, inconsistency = 16868091 45765655 45766952 30461 29168 NC_000014.9 scf7180000172766 99.69 True indel: indel (<= 5bp) 45762271 45765562 33843 30552 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 45756339 45762086 39915 33989 NC_000014.9 scf7180000172766 97.75 True fake: scaffold gap size wrong estimation (local) 45754109 45755807 41996 40318 NC_000014.9 scf7180000172766 98.39 True fake: scaffold gap size wrong estimation (local) 45752072 45753401 44047 42718 NC_000014.9 scf7180000172766 99.92 True relocation, scaffold gap is present, inconsistency = 10570438 35180021 35181613 44068 45660 NC_000014.9 scf7180000172766 99.81 True fake: scaffold gap size wrong estimation (local) 35182570 35187440 46543 51252 NC_000014.9 scf7180000172766 96.11 True fake: scaffold gap size wrong estimation (local) 35189446 35190011 53342 53907 NC_000014.9 scf7180000172766 99.82 True fake: scaffold gap size wrong estimation (local) 35190561 35198831 54410 62681 NC_000014.9 scf7180000172766 99.83 True fake: scaffold gap size wrong estimation (local) 35199354 35200253 63082 63981 NC_000014.9 scf7180000172766 99.78 True fake: scaffold gap size wrong estimation (local) 35200470 35201740 64189 65459 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 35202146 35207893 65629 71552 NC_000014.9 scf7180000172766 97.29 True fake: scaffold gap size wrong estimation (local) 35208085 35215878 71701 79207 NC_000014.9 scf7180000172766 95.93 True fake: scaffold gap size wrong estimation (local) 35216158 35218459 79591 81857 NC_000014.9 scf7180000172766 97.07 True fake: scaffold gap size wrong estimation (local) 35218748 35223474 82192 86917 NC_000014.9 scf7180000172766 99.94 True fake: scaffold gap size wrong estimation (local) 35223731 35225394 87099 88762 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 35225622 35227190 89014 90633 NC_000014.9 scf7180000172766 98.8 True fake: scaffold gap size wrong estimation (local) 35228111 35234690 91521 98112 NC_000014.9 scf7180000172766 97.9 True fake: scaffold gap size wrong estimation (local) 35235192 35235955 98766 99529 NC_000014.9 scf7180000172766 100.0 True local misassembly 35236091 35237892 99530 101331 NC_000014.9 scf7180000172766 98.72 True fake: scaffold gap size wrong estimation (local) 35237893 35239155 101418 102680 NC_000014.9 scf7180000172766 97.15 True indel: indel (> 5bp) 35239188 35239887 102681 103380 NC_000014.9 scf7180000172766 96.57 True fake: scaffold gap size wrong estimation (local) 35240308 35241187 103747 104626 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 35241363 35251650 104749 115017 NC_000014.9 scf7180000172766 99.49 True fake: scaffold gap size wrong estimation (local) 35251827 35254459 115162 117801 NC_000014.9 scf7180000172766 99.77 True fake: scaffold gap size wrong estimation (local) 35254654 35255219 118000 118565 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 35255402 35256032 118971 119601 NC_000014.9 scf7180000172766 100.0 True relocation, scaffold gap is present, inconsistency = 28543412 63799624 63801529 121686 119781 NC_000014.9 scf7180000172766 99.74 True fake: scaffold gap size wrong estimation (local) 63798687 63799198 122461 121950 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63797599 63798412 123760 122947 NC_000014.9 scf7180000172766 97.3 True indel: indel (<= 5bp) 63797068 63797594 124287 123761 NC_000014.9 scf7180000172766 95.45 True fake: scaffold gap size wrong estimation (local) 63794427 63795514 127490 126403 NC_000014.9 scf7180000172766 99.82 True fake: scaffold gap size wrong estimation (local) 63792896 63793776 128611 127730 NC_000014.9 scf7180000172766 99.55 True fake: scaffold gap size wrong estimation (local) 63786227 63792664 135243 128936 NC_000014.9 scf7180000172766 96.61 True fake: scaffold gap size wrong estimation (local) 63783455 63785886 138096 135671 NC_000014.9 scf7180000172766 99.26 True fake: scaffold gap size wrong estimation (local) 63780436 63781200 140750 139986 NC_000014.9 scf7180000172766 99.74 True fake: scaffold gap size wrong estimation (local) 63777768 63779165 143424 142042 NC_000014.9 scf7180000172766 98.35 True fake: scaffold gap size wrong estimation (local) 63775328 63776647 145886 144567 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63774490 63775094 146851 146247 NC_000014.9 scf7180000172766 99.83 True fake: scaffold gap size wrong estimation (local) 63771678 63774089 149619 147283 NC_000014.9 scf7180000172766 96.78 True fake: scaffold gap size wrong estimation (local) 63769807 63771075 151046 149778 NC_000014.9 scf7180000172766 99.92 True fake: scaffold gap size wrong estimation (local) 63768184 63769463 153445 152166 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63766291 63767139 155060 154212 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63765606 63766109 156089 155586 NC_000014.9 scf7180000172766 95.63 True local misassembly 63764574 63765406 156922 156090 NC_000014.9 scf7180000172766 97.6 True indel: indel (> 5bp) 63763239 63764533 158217 156923 NC_000014.9 scf7180000172766 99.85 True fake: scaffold gap size wrong estimation (local) 63762596 63763238 159203 158561 NC_000014.9 scf7180000172766 98.44 True fake: scaffold gap size wrong estimation (local) 63761168 63762314 160458 159312 NC_000014.9 scf7180000172766 99.83 True fake: scaffold gap size wrong estimation (local) 63759335 63760271 162530 161594 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63757071 63757708 164631 163994 NC_000014.9 scf7180000172766 96.87 True local misassembly 63755834 63756898 165696 164632 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63753774 63754652 167842 166964 NC_000014.9 scf7180000172766 99.66 True fake: scaffold gap size wrong estimation (local) 63752326 63753650 169274 167950 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63749889 63750936 171920 170874 NC_000014.9 scf7180000172766 99.9 True fake: scaffold gap size wrong estimation (local) 63747512 63748747 173585 172340 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63745242 63746807 175192 173627 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63743538 63744313 176928 176153 NC_000014.9 scf7180000172766 99.87 True fake: scaffold gap size wrong estimation (local) 63741456 63742170 179756 179042 NC_000014.9 scf7180000172766 97.2 True fake: scaffold gap size wrong estimation (local) 63738800 63741058 182330 180072 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63735537 63738424 185527 182640 NC_000014.9 scf7180000172766 99.79 True fake: scaffold gap size wrong estimation (local) 63733797 63734671 187241 186367 NC_000014.9 scf7180000172766 99.89 True local misassembly 63732939 63733515 187818 187242 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63731451 63732793 189654 188312 NC_000014.9 scf7180000172766 98.44 True local misassembly 63730436 63731261 190480 189655 NC_000014.9 scf7180000172766 99.76 True fake: scaffold gap size wrong estimation (local) 63729752 63730310 191416 190858 NC_000014.9 scf7180000172766 99.46 True fake: scaffold gap size wrong estimation (local) 63725319 63729198 195687 191791 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63723581 63724887 197638 196333 NC_000014.9 scf7180000172766 99.84 True fake: scaffold gap size wrong estimation (local) 63720519 63722364 200370 198525 NC_000014.9 scf7180000172766 99.95 True fake: scaffold gap size wrong estimation (local) 63719224 63719920 202104 201408 NC_000014.9 scf7180000172766 96.84 True local misassembly 63718165 63718972 202912 202105 NC_000014.9 scf7180000172766 97.52 True indel: indel (> 5bp) 63717529 63718149 203533 202913 NC_000014.9 scf7180000172766 99.84 True fake: scaffold gap size wrong estimation (local) 63712047 63716305 209059 204684 NC_000014.9 scf7180000172766 96.27 True fake: scaffold gap size wrong estimation (local) 63711237 63711896 209926 209267 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63709376 63711029 211726 210073 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63708422 63709282 212710 211850 NC_000014.9 scf7180000172766 97.33 True local misassembly 63707602 63708261 213370 212711 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63705326 63707049 215231 213508 NC_000014.9 scf7180000172766 100.0 True local misassembly 63707043 63707550 215816 215309 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63703802 63705368 217445 215879 NC_000014.9 scf7180000172766 98.4 True fake: scaffold gap size wrong estimation (local) 63702654 63703472 218441 217623 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63696819 63702561 224396 218732 NC_000014.9 scf7180000172766 98.54 True fake: scaffold gap size wrong estimation (local) 63695334 63696734 225940 224587 NC_000014.9 scf7180000172766 96.6 True fake: scaffold gap size wrong estimation (local) 63689791 63695103 231667 226111 NC_000014.9 scf7180000172766 96.33 True fake: scaffold gap size wrong estimation (local) 63680092 63689546 241176 231768 NC_000014.9 scf7180000172766 96.91 True fake: scaffold gap size wrong estimation (local) 63677777 63678945 243517 242260 NC_000014.9 scf7180000172766 99.24 True fake: scaffold gap size wrong estimation (local) 63671358 63677681 249908 243552 NC_000014.9 scf7180000172766 99.78 True fake: scaffold gap size wrong estimation (local) 63669603 63671159 251575 250014 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63667969 63669434 253274 251809 NC_000014.9 scf7180000172766 98.57 True fake: scaffold gap size wrong estimation (local) 63661434 63665791 259511 255144 NC_000014.9 scf7180000172766 99.98 True fake: scaffold gap size wrong estimation (local) 63660292 63661280 260640 259636 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63659513 63660182 261413 260744 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63655744 63657863 265130 262999 NC_000014.9 scf7180000172766 99.53 True fake: scaffold gap size wrong estimation (local) 63654918 63655560 266245 265603 NC_000014.9 scf7180000172766 96.89 True fake: scaffold gap size wrong estimation (local) 63653449 63654300 267464 266613 NC_000014.9 scf7180000172766 99.77 True fake: scaffold gap size wrong estimation (local) 63652181 63652956 268873 268098 NC_000014.9 scf7180000172766 99.61 True fake: scaffold gap size wrong estimation (local) 63649028 63651617 271911 269390 NC_000014.9 scf7180000172766 97.31 True fake: scaffold gap size wrong estimation (local) 63646659 63648839 274354 272174 NC_000014.9 scf7180000172766 99.91 True fake: scaffold gap size wrong estimation (local) 63643934 63646431 277087 274572 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 63640716 63643673 280335 277287 NC_000014.9 scf7180000172766 99.9 True fake: scaffold gap size wrong estimation (local) 63638166 63640569 282802 280393 NC_000014.9 scf7180000172766 99.71 True fake: scaffold gap size wrong estimation (local) 63636864 63637751 283897 283010 NC_000014.9 scf7180000172766 99.77 True relocation, scaffold gap is present, inconsistency = -30434930 94070154 94071443 285537 284248 NC_000014.9 scf7180000172766 98.91 True fake: scaffold gap size wrong estimation (local) 94067357 94068655 288477 287179 NC_000014.9 scf7180000172766 99.38 True indel: indel (<= 5bp) 94066698 94067356 289139 288481 NC_000014.9 scf7180000172766 98.79 True indel: indel (<= 5bp) 94065806 94066697 290032 289141 NC_000014.9 scf7180000172766 97.98 True fake: scaffold gap size wrong estimation (local) 94065257 94065805 290825 290277 NC_000014.9 scf7180000172766 99.82 True fake: scaffold gap size wrong estimation (local) 94053718 94065074 302227 290871 NC_000014.9 scf7180000172766 99.94 True fake: scaffold gap size wrong estimation (local) 94019161 94053566 336773 302328 NC_000014.9 scf7180000172766 99.83 True fake: scaffold gap size wrong estimation (local) 94014088 94018944 341865 337009 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 94013173 94013761 342710 342122 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 94010485 94012182 345320 343623 NC_000014.9 scf7180000172766 100.0 True fake: scaffold gap size wrong estimation (local) 94009641 94010327 346210 345524 NC_000014.9 scf7180000172766 98.69 True fake: scaffold gap size wrong estimation (local) 94006940 94009640 348926 346226 NC_000014.9 scf7180000172766 99.22 True local misassembly 94004359 94006566 351134 348927 NC_000014.9 scf7180000172766 99.95 True fake: scaffold gap size wrong estimation (local) 93962299 94005628 395377 351909 NC_000014.9 scf7180000172766 99.33 True fake: scaffold gap size wrong estimation (local) 93948012 93962120 409578 395470 NC_000014.9 scf7180000172766 99.82 True fake: scaffold gap size wrong estimation (local) 93923191 93947767 434465 409823 NC_000014.9 scf7180000172766 99.54 True fake: scaffold gap size wrong estimation (local) 93907505 93922463 450152 435210 NC_000014.9 scf7180000172766 99.8 True fake: scaffold gap size wrong estimation (local) 93902529 93907297 455084 450316 NC_000014.9 scf7180000172766 99.81 True indel: stretch of mismatches 93901808 93902442 455805 455171 NC_000014.9 scf7180000172766 99.69 True fake: scaffold gap size wrong estimation (local) 93896568 93901089 461020 456498 NC_000014.9 scf7180000172766 99.45 True fake: scaffold gap size wrong estimation (local) 93892696 93896449 465364 461611 NC_000014.9 scf7180000172766 99.87 True fake: scaffold gap size wrong estimation (local) 93889888 93892695 468780 465973 NC_000014.9 scf7180000172766 99.79 True indel: indel (<= 5bp) 93888261 93889887 470408 468782 NC_000014.9 scf7180000172766 99.63 True fake: scaffold gap size wrong estimation (local) 93886937 93888235 472108 470810 NC_000014.9 scf7180000172766 99.69 True fake: scaffold gap size wrong estimation (local) 93866586 93886736 492984 472594 NC_000014.9 scf7180000172766 98.2 True fake: scaffold gap size wrong estimation (local) 93845876 93866299 513969 493283 NC_000014.9 scf7180000172766 97.9 True relocation, scaffold gap is present, inconsistency = 49830865 44013456 44014990 515524 513990 NC_000014.9 scf7180000172766 99.93 True fake: scaffold gap size wrong estimation (local) 44012244 44013212 517569 516601 NC_000014.9 scf7180000172766 97.73 True indel: indel (> 5bp) 44007703 44012160 522027 517570 NC_000014.9 scf7180000172766 99.87 True fake: scaffold gap size wrong estimation (local) 44005331 44007702 524591 522220 NC_000014.9 scf7180000172766 99.92 True local misassembly 44004273 44005198 525517 524592 NC_000014.9 scf7180000172766 99.89 True fake: scaffold gap size wrong estimation (local) 44000153 44004272 529662 525543 NC_000014.9 scf7180000172766 99.9 True indel: indel (<= 5bp) 43998777 44000151 531037 529663 NC_000014.9 scf7180000172766 98.4 True fake: scaffold gap size wrong estimation (local) 43996323 43998495 535240 533068 NC_000014.9 scf7180000172766 98.99 True indel: indel (> 5bp) 43988923 43996241 542559 535241 NC_000014.9 scf7180000172766 99.62 True indel: indel (> 5bp) 43986412 43988855 545003 542560 NC_000014.9 scf7180000172766 99.71 True indel: indel (<= 5bp) 43983877 43986410 547537 545004 NC_000014.9 scf7180000172766 98.93 True fake: scaffold gap size wrong estimation (local) 43982523 43983876 548909 547556 NC_000014.9 scf7180000172766 99.93 True indel: indel (<= 5bp) 43978866 43982522 552567 548911 NC_000014.9 scf7180000172766 99.78 True indel: indel (<= 5bp) 43977344 43978865 554093 552572 NC_000014.9 scf7180000172766 98.95 True fake: scaffold gap size wrong estimation (local) 43976466 43977099 555001 554368 NC_000014.9 scf7180000172766 99.68 True fake: scaffold gap size wrong estimation (local) 43973821 43976257 557623 555187 NC_000014.9 scf7180000172766 99.88 True fake: scaffold gap size wrong estimation (local) 43968491 43973622 562904 557735 NC_000014.9 scf7180000172766 99.86 True fake: scaffold gap size wrong estimation (local) 43960215 43968064 571183 563300 NC_000014.9 scf7180000172766 99.59 True fake: scaffold gap size wrong estimation (local) 43956581 43960023 575273 571831 NC_000014.9 scf7180000172766 99.85 True fake: scaffold gap size wrong estimation (local) 43955920 43956438 575972 575454 NC_000014.9 scf7180000172766 99.81 True fake: scaffold gap size wrong estimation (local) 43947385 43955670 584481 576196 NC_000014.9 scf7180000172766 99.89 True indel: indel (<= 5bp) 43944702 43947384 587165 584483 NC_000014.9 scf7180000172766 99.25 True local misassembly 43943897 43944531 587800 587166 NC_000014.9 scf7180000172766 100.0 True indel: indel (<= 5bp) 43943001 43943895 588695 587801 NC_000014.9 scf7180000172766 99.66 True fake: scaffold gap size wrong estimation (local) 43941964 43943000 590205 589169 NC_000014.9 scf7180000172766 96.34 True local misassembly 43936627 43941459 595038 590206 NC_000014.9 scf7180000172766 99.42 True fake: not a misassembly (possible transposable element) 38853559 38854195 595806 596442 NC_000014.9 scf7180000172766 99.84 True fake: not a misassembly (possible transposable element) 43910909 43935720 621550 596464 NC_000014.9 scf7180000172766 96.98 True indel: indel (> 5bp) 43905937 43910816 626515 621605 NC_000014.9 scf7180000172766 99.51 True fake: scaffold gap size wrong estimation (local) 43862424 43904880 670017 627463 NC_000014.9 scf7180000172766 99.71 True fake: scaffold gap size wrong estimation (local) 43860307 43862192 672119 670242 NC_000014.9 scf7180000172766 99.47 True fake: scaffold gap size wrong estimation (local) 43857383 43860176 675041 672248 NC_000014.9 scf7180000172766 99.89 True fake: scaffold gap size wrong estimation (local) 43849619 43856733 683191 676059 NC_000014.9 scf7180000172766 99.86 True fake: scaffold gap size wrong estimation (local) 43833481 43849262 699175 683533 NC_000014.9 scf7180000172766 98.84 True fake: scaffold gap size wrong estimation (local) 43829249 43833339 703486 699274 NC_000014.9 scf7180000172766 97.5 True relocation, inconsistency = -16576892 60402743 60406140 706897 703487 NC_000014.9 scf7180000172766 99.79 True fake: scaffold gap size wrong estimation (local) 60387424 60402649 722188 706993 NC_000014.9 scf7180000172766 99.72 True fake: scaffold gap size wrong estimation (local) 60377647 60382541 731846 726842 NC_000014.9 scf7180000172766 98.23 True fake: scaffold gap size wrong estimation (local) 60375444 60377052 733998 732390 NC_000014.9 scf7180000172766 100.0 True CONTIG scf7180000172766 733998 misassembled 68839660 68845331 113 5788 NC_000014.9 scf7180000172767 96.13 True fake: scaffold gap size wrong estimation (local) 68845443 68847939 5938 8333 NC_000014.9 scf7180000172767 95.45 True fake: scaffold gap size wrong estimation (local) 68848125 68850820 8502 11197 NC_000014.9 scf7180000172767 99.93 True fake: scaffold gap size wrong estimation (local) 68851074 68852956 11472 13404 NC_000014.9 scf7180000172767 98.38 True fake: scaffold gap size wrong estimation (local) 68853260 68855950 13669 16315 NC_000014.9 scf7180000172767 98.15 True fake: scaffold gap size wrong estimation (local) 68855942 68859672 16372 19933 NC_000014.9 scf7180000172767 95.01 True fake: scaffold gap size wrong estimation (local) 68859861 68860417 20166 20720 NC_000014.9 scf7180000172767 99.64 True fake: scaffold gap size wrong estimation (local) 68860562 68862078 20818 22322 NC_000014.9 scf7180000172767 98.95 True fake: scaffold gap size wrong estimation (local) 68862813 68863632 22662 23481 NC_000014.9 scf7180000172767 99.51 True fake: scaffold gap size wrong estimation (local) 68863880 68866109 24025 26254 NC_000014.9 scf7180000172767 99.82 True fake: scaffold gap size wrong estimation (local) 68866169 68868423 28245 30408 NC_000014.9 scf7180000172767 95.66 True fake: scaffold gap size wrong estimation (local) 68869566 68870463 31526 32423 NC_000014.9 scf7180000172767 99.55 True fake: scaffold gap size wrong estimation (local) 68870852 68882123 32734 44110 NC_000014.9 scf7180000172767 99.15 True fake: scaffold gap size wrong estimation (local) 68882645 68886540 44546 48441 NC_000014.9 scf7180000172767 99.92 True fake: scaffold gap size wrong estimation (local) 68886779 68901215 48673 63168 NC_000014.9 scf7180000172767 99.68 True fake: scaffold gap size wrong estimation (local) 68901314 68903430 63189 65369 NC_000014.9 scf7180000172767 99.66 True fake: scaffold gap size wrong estimation (local) 68903538 68907015 65480 68955 NC_000014.9 scf7180000172767 99.91 True fake: scaffold gap size wrong estimation (local) 68907348 68918325 69264 80273 NC_000014.9 scf7180000172767 99.91 True fake: scaffold gap size wrong estimation (local) 68918694 68932134 80371 93829 NC_000014.9 scf7180000172767 99.99 True fake: scaffold gap size wrong estimation (local) 68932520 68933323 94219 95022 NC_000014.9 scf7180000172767 97.89 True indel: indel (> 5bp) 68933388 68933988 95023 95623 NC_000014.9 scf7180000172767 96.67 True fake: scaffold gap size wrong estimation (local) 68933989 68935250 95859 97120 NC_000014.9 scf7180000172767 99.92 True fake: scaffold gap size wrong estimation (local) 68935486 68936500 97228 98242 NC_000014.9 scf7180000172767 100.0 True indel: indel (<= 5bp) 68936502 68940676 98243 102417 NC_000014.9 scf7180000172767 99.98 True indel: indel (> 5bp) 68940677 68942378 102436 104137 NC_000014.9 scf7180000172767 99.35 True indel: indel (<= 5bp) 68942380 68945163 104138 106921 NC_000014.9 scf7180000172767 99.96 True indel: indel (<= 5bp) 68945164 68948429 106923 110188 NC_000014.9 scf7180000172767 99.97 True fake: scaffold gap size wrong estimation (local) 68948430 68950074 111679 113323 NC_000014.9 scf7180000172767 99.76 True fake: scaffold gap size wrong estimation (local) 68950645 68953626 113616 116597 NC_000014.9 scf7180000172767 97.25 True fake: scaffold gap size wrong estimation (local) 68954585 68984125 117461 147077 NC_000014.9 scf7180000172767 99.82 True fake: scaffold gap size wrong estimation (local) 68984764 68995326 147656 158150 NC_000014.9 scf7180000172767 98.99 True fake: scaffold gap size wrong estimation (local) 68995546 68996165 158239 158858 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 68996331 68997050 159165 159884 NC_000014.9 scf7180000172767 99.72 True fake: scaffold gap size wrong estimation (local) 68997310 68998735 160062 161483 NC_000014.9 scf7180000172767 99.51 True fake: scaffold gap size wrong estimation (local) 68999506 69015504 162197 178252 NC_000014.9 scf7180000172767 98.3 True fake: scaffold gap size wrong estimation (local) 69015987 69016749 178724 179486 NC_000014.9 scf7180000172767 99.87 True fake: scaffold gap size wrong estimation (local) 69017411 69019919 180296 182712 NC_000014.9 scf7180000172767 95.98 True fake: scaffold gap size wrong estimation (local) 69020345 69021081 183301 184037 NC_000014.9 scf7180000172767 99.86 True fake: scaffold gap size wrong estimation (local) 69021536 69023045 184218 185727 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69023530 69025779 186369 188623 NC_000014.9 scf7180000172767 98.57 True fake: scaffold gap size wrong estimation (local) 69025994 69027948 189058 191012 NC_000014.9 scf7180000172767 99.95 True fake: scaffold gap size wrong estimation (local) 69028659 69029307 191790 192438 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69029817 69030773 192768 193724 NC_000014.9 scf7180000172767 99.69 True fake: scaffold gap size wrong estimation (local) 69030876 69031530 194039 194693 NC_000014.9 scf7180000172767 99.69 True local misassembly 69031710 69032589 194694 195573 NC_000014.9 scf7180000172767 97.5 True fake: scaffold gap size wrong estimation (local) 69033357 69049153 196361 212152 NC_000014.9 scf7180000172767 99.88 True fake: scaffold gap size wrong estimation (local) 69049398 69065106 212382 228074 NC_000014.9 scf7180000172767 99.81 True fake: scaffold gap size wrong estimation (local) 69065367 69066165 228281 229079 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69066314 69067353 229191 230232 NC_000014.9 scf7180000172767 99.9 True fake: scaffold gap size wrong estimation (local) 69067858 69068444 230704 231290 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69068669 69074839 231508 237707 NC_000014.9 scf7180000172767 99.79 True fake: scaffold gap size wrong estimation (local) 69074972 69077283 237885 240227 NC_000014.9 scf7180000172767 98.92 True fake: scaffold gap size wrong estimation (local) 69077379 69098638 240486 261761 NC_000014.9 scf7180000172767 99.79 True fake: scaffold gap size wrong estimation (local) 69099059 69101961 262131 265022 NC_000014.9 scf7180000172767 99.62 True fake: scaffold gap size wrong estimation (local) 69102360 69104613 265373 267623 NC_000014.9 scf7180000172767 99.87 True fake: scaffold gap size wrong estimation (local) 69104848 69106091 267824 269057 NC_000014.9 scf7180000172767 99.2 True fake: scaffold gap size wrong estimation (local) 69106439 69109087 269407 272011 NC_000014.9 scf7180000172767 98.17 True fake: scaffold gap size wrong estimation (local) 69109225 69123775 272151 286583 NC_000014.9 scf7180000172767 98.83 True fake: scaffold gap size wrong estimation (local) 69124257 69126163 287047 288953 NC_000014.9 scf7180000172767 99.95 True fake: scaffold gap size wrong estimation (local) 69126296 69128202 289035 290941 NC_000014.9 scf7180000172767 99.95 True fake: scaffold gap size wrong estimation (local) 69128409 69136344 291143 299139 NC_000014.9 scf7180000172767 99.41 True fake: not a misassembly (possible transposable element) 89843956 89844679 299883 299160 NC_000014.9 scf7180000172767 100.0 True fake: not a misassembly (possible transposable element) 69135662 69148105 299884 312166 NC_000014.9 scf7180000172767 97.43 True fake: scaffold gap size wrong estimation (local) 69148663 69157523 312664 321524 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69157720 69158307 321580 322167 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69158470 69162651 322367 326547 NC_000014.9 scf7180000172767 99.81 True fake: scaffold gap size wrong estimation (local) 69162761 69163706 327029 327974 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69164171 69166962 328189 330980 NC_000014.9 scf7180000172767 99.75 True fake: scaffold gap size wrong estimation (local) 69167802 69169765 331794 333756 NC_000014.9 scf7180000172767 99.9 True fake: scaffold gap size wrong estimation (local) 69170107 69173260 334021 337198 NC_000014.9 scf7180000172767 99.29 True indel: indel (<= 5bp) 69173436 69177679 337375 341664 NC_000014.9 scf7180000172767 98.9 True fake: scaffold gap size wrong estimation (local) 69177865 69182135 341798 345997 NC_000014.9 scf7180000172767 98.28 True fake: scaffold gap size wrong estimation (local) 69182476 69185005 346229 348797 NC_000014.9 scf7180000172767 99.45 True fake: scaffold gap size wrong estimation (local) 69185207 69194155 349005 357837 NC_000014.9 scf7180000172767 98.07 True fake: scaffold gap size wrong estimation (local) 69194418 69195026 358107 358715 NC_000014.9 scf7180000172767 99.84 True fake: scaffold gap size wrong estimation (local) 69195284 69196622 358969 360307 NC_000014.9 scf7180000172767 99.33 True indel: indel (<= 5bp) 69196794 69197781 360474 361461 NC_000014.9 scf7180000172767 99.7 True indel: indel (<= 5bp) 69197783 69199025 361462 362704 NC_000014.9 scf7180000172767 99.76 True fake: scaffold gap size wrong estimation (local) 69199617 69200709 363584 364676 NC_000014.9 scf7180000172767 99.45 True local misassembly 69200931 69201675 364809 365553 NC_000014.9 scf7180000172767 96.91 True fake: scaffold gap size wrong estimation (local) 69201676 69206081 365592 369997 NC_000014.9 scf7180000172767 98.84 True fake: scaffold gap size wrong estimation (local) 69206755 69207263 370731 371239 NC_000014.9 scf7180000172767 100.0 True local misassembly 69207399 69207911 371240 371752 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69208476 69212163 372274 376055 NC_000014.9 scf7180000172767 99.92 True fake: scaffold gap size wrong estimation (local) 69212787 69217661 376664 381561 NC_000014.9 scf7180000172767 97.57 True fake: scaffold gap size wrong estimation (local) 69219307 69220259 382921 383873 NC_000014.9 scf7180000172767 99.9 True fake: scaffold gap size wrong estimation (local) 69220768 69226549 384850 390385 NC_000014.9 scf7180000172767 95.4 True fake: scaffold gap size wrong estimation (local) 69226792 69227778 392554 393540 NC_000014.9 scf7180000172767 100.0 True local misassembly 69228415 69230862 393541 395988 NC_000014.9 scf7180000172767 98.94 True indel: indel (> 5bp) 69230880 69231919 395989 397028 NC_000014.9 scf7180000172767 98.08 True fake: scaffold gap size wrong estimation (local) 69231920 69233384 397047 398511 NC_000014.9 scf7180000172767 99.86 True fake: not a misassembly (possible transposable element) 102528933 102529653 398958 399678 NC_000014.9 scf7180000172767 99.72 True fake: not a misassembly (possible transposable element) 69233980 69276233 399699 441785 NC_000014.9 scf7180000172767 99.14 True fake: scaffold gap size wrong estimation (local) 69276663 69277820 442254 443411 NC_000014.9 scf7180000172767 97.93 True fake: scaffold gap size wrong estimation (local) 69278021 69279042 443576 444597 NC_000014.9 scf7180000172767 99.9 True fake: scaffold gap size wrong estimation (local) 69279189 69282710 444702 448231 NC_000014.9 scf7180000172767 99.63 True fake: scaffold gap size wrong estimation (local) 69282919 69284956 448507 450544 NC_000014.9 scf7180000172767 99.8 True fake: scaffold gap size wrong estimation (local) 69285251 69286400 450867 452014 NC_000014.9 scf7180000172767 99.13 True fake: scaffold gap size wrong estimation (local) 69286577 69294185 452131 459739 NC_000014.9 scf7180000172767 99.89 True fake: not a misassembly (possible transposable element) 52701911 52702550 459771 460410 NC_000014.9 scf7180000172767 100.0 True fake: not a misassembly (possible transposable element) 69294290 69295420 460411 461541 NC_000014.9 scf7180000172767 99.82 True local misassembly 69295538 69296511 461542 462515 NC_000014.9 scf7180000172767 97.64 True fake: scaffold gap size wrong estimation (local) 69296632 69309273 462616 475732 NC_000014.9 scf7180000172767 96.49 True fake: scaffold gap size wrong estimation (local) 69309572 69349968 475949 516252 NC_000014.9 scf7180000172767 99.29 True fake: scaffold gap size wrong estimation (local) 69350117 69356560 516446 522889 NC_000014.9 scf7180000172767 99.97 True fake: scaffold gap size wrong estimation (local) 69356827 69359936 523088 526197 NC_000014.9 scf7180000172767 99.36 True indel: indel (> 5bp) 69360388 69361759 526584 527955 NC_000014.9 scf7180000172767 98.32 True fake: scaffold gap size wrong estimation (local) 69361746 69371399 529474 539435 NC_000014.9 scf7180000172767 97.07 True fake: scaffold gap size wrong estimation (local) 69372592 69381030 540641 549075 NC_000014.9 scf7180000172767 99.89 True fake: scaffold gap size wrong estimation (local) 69381168 69388606 549198 556470 NC_000014.9 scf7180000172767 97.32 True fake: scaffold gap size wrong estimation (local) 69389254 69391213 557086 559045 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69391672 69397670 559751 565702 NC_000014.9 scf7180000172767 99.15 True fake: scaffold gap size wrong estimation (local) 69397883 69402886 565971 570994 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69402976 69403786 571463 572273 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69403966 69406587 572348 574969 NC_000014.9 scf7180000172767 99.89 True fake: scaffold gap size wrong estimation (local) 69407783 69411029 576173 579433 NC_000014.9 scf7180000172767 99.91 True fake: scaffold gap size wrong estimation (local) 69411221 69411826 579521 580126 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69412392 69413102 580809 581519 NC_000014.9 scf7180000172767 97.19 True fake: scaffold gap size wrong estimation (local) 69413334 69416270 581617 584574 NC_000014.9 scf7180000172767 99.76 True fake: scaffold gap size wrong estimation (local) 69418222 69418915 586223 586920 NC_000014.9 scf7180000172767 97.57 True indel: stretch of mismatches 69419203 69419732 587208 587737 NC_000014.9 scf7180000172767 97.36 True fake: scaffold gap size wrong estimation (local) 69420444 69421673 588424 589650 NC_000014.9 scf7180000172767 99.11 True indel: indel (<= 5bp) 69421780 69428074 589759 596241 NC_000014.9 scf7180000172767 99.4 True fake: scaffold gap size wrong estimation (local) 69428275 69433956 596491 602187 NC_000014.9 scf7180000172767 99.95 True fake: scaffold gap size wrong estimation (local) 69434084 69436977 602394 605176 NC_000014.9 scf7180000172767 95.57 True fake: scaffold gap size wrong estimation (local) 69437140 69438115 605378 606352 NC_000014.9 scf7180000172767 99.8 True fake: scaffold gap size wrong estimation (local) 69438219 69440724 606570 609075 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69440853 69447926 609512 616417 NC_000014.9 scf7180000172767 97.34 True fake: scaffold gap size wrong estimation (local) 69448232 69452336 616740 620799 NC_000014.9 scf7180000172767 98.85 True fake: scaffold gap size wrong estimation (local) 69452591 69455420 621033 623862 NC_000014.9 scf7180000172767 99.93 True fake: scaffold gap size wrong estimation (local) 69455561 69457350 624025 625814 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69457473 69463016 625894 631461 NC_000014.9 scf7180000172767 99.93 True fake: scaffold gap size wrong estimation (local) 69464199 69465295 632632 633728 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69465988 69469936 634408 638356 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69470262 69470781 638850 639369 NC_000014.9 scf7180000172767 100.0 True local misassembly 69471122 69472693 639370 640941 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69473087 69476049 641569 644531 NC_000014.9 scf7180000172767 99.93 True fake: scaffold gap size wrong estimation (local) 69476252 69477000 644803 645551 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69477124 69478370 645632 646878 NC_000014.9 scf7180000172767 99.68 True fake: scaffold gap size wrong estimation (local) 69478681 69482891 647137 651347 NC_000014.9 scf7180000172767 99.95 True fake: scaffold gap size wrong estimation (local) 69482936 69498023 651841 666914 NC_000014.9 scf7180000172767 99.67 True fake: scaffold gap size wrong estimation (local) 69498848 69503434 667700 672282 NC_000014.9 scf7180000172767 99.91 True fake: scaffold gap size wrong estimation (local) 69503867 69506898 672670 675701 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69507167 69509686 675977 678431 NC_000014.9 scf7180000172767 97.28 True fake: scaffold gap size wrong estimation (local) 69509929 69515034 678833 683956 NC_000014.9 scf7180000172767 99.8 True fake: scaffold gap size wrong estimation (local) 69515170 69519914 684041 688804 NC_000014.9 scf7180000172767 99.37 True fake: scaffold gap size wrong estimation (local) 69520192 69530964 689106 699811 NC_000014.9 scf7180000172767 99.09 True indel: indel (<= 5bp) 69531055 69534317 699903 703200 NC_000014.9 scf7180000172767 99.42 True fake: scaffold gap size wrong estimation (local) 69534727 69541420 703531 710265 NC_000014.9 scf7180000172767 99.67 True fake: scaffold gap size wrong estimation (local) 69541662 69545371 710451 714160 NC_000014.9 scf7180000172767 99.92 True fake: scaffold gap size wrong estimation (local) 69545465 69552846 714557 721985 NC_000014.9 scf7180000172767 99.77 True fake: scaffold gap size wrong estimation (local) 69553123 69558167 722231 727290 NC_000014.9 scf7180000172767 99.8 True fake: scaffold gap size wrong estimation (local) 69558677 69578018 727765 746990 NC_000014.9 scf7180000172767 99.25 True fake: scaffold gap size wrong estimation (local) 69578136 69578724 747136 747723 NC_000014.9 scf7180000172767 99.83 True fake: scaffold gap size wrong estimation (local) 69578881 69585303 747849 754351 NC_000014.9 scf7180000172767 98.84 True fake: scaffold gap size wrong estimation (local) 69585503 69588535 754480 757572 NC_000014.9 scf7180000172767 98.5 True fake: scaffold gap size wrong estimation (local) 69588611 69590196 757751 759336 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 69591097 69594100 760194 763233 NC_000014.9 scf7180000172767 99.9 True fake: scaffold gap size wrong estimation (local) 69594685 69596412 763901 765628 NC_000014.9 scf7180000172767 100.0 True relocation, scaffold gap is present, inconsistency = -31941857 37654576 37657027 765649 768096 NC_000014.9 scf7180000172767 99.84 True fake: scaffold gap size wrong estimation (local) 37657370 37659361 768472 770463 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 37660243 37661799 771298 772854 NC_000014.9 scf7180000172767 99.94 True indel: stretch of mismatches 37661876 37662831 772931 773886 NC_000014.9 scf7180000172767 99.69 True fake: scaffold gap size wrong estimation (local) 37664130 37667935 775150 778977 NC_000014.9 scf7180000172767 99.87 True fake: scaffold gap size wrong estimation (local) 37668089 37670489 779128 781528 NC_000014.9 scf7180000172767 99.96 True fake: scaffold gap size wrong estimation (local) 37670737 37692611 781712 803807 NC_000014.9 scf7180000172767 99.16 True fake: scaffold gap size wrong estimation (local) 37692869 37695484 804022 806665 NC_000014.9 scf7180000172767 99.12 True fake: scaffold gap size wrong estimation (local) 37695623 37700492 806789 811658 NC_000014.9 scf7180000172767 99.94 True fake: scaffold gap size wrong estimation (local) 37700761 37725263 811899 836347 NC_000014.9 scf7180000172767 99.56 True fake: scaffold gap size wrong estimation (local) 37725468 37727313 836539 838384 NC_000014.9 scf7180000172767 100.0 True fake: scaffold gap size wrong estimation (local) 37727548 37732146 838527 843141 NC_000014.9 scf7180000172767 99.43 True fake: scaffold gap size wrong estimation (local) 37732883 37742414 843737 853308 NC_000014.9 scf7180000172767 96.79 True fake: scaffold gap size wrong estimation (local) 37742593 37751824 853504 862733 NC_000014.9 scf7180000172767 99.78 True fake: scaffold gap size wrong estimation (local) 37752066 37754188 862919 865066 NC_000014.9 scf7180000172767 99.62 True fake: scaffold gap size wrong estimation (local) 37755727 37756779 866535 867587 NC_000014.9 scf7180000172767 98.86 True fake: scaffold gap size wrong estimation (local) 37757363 37762881 868035 873648 NC_000014.9 scf7180000172767 97.16 True fake: scaffold gap size wrong estimation (local) 37763160 37766923 873849 877638 NC_000014.9 scf7180000172767 99.84 True CONTIG scf7180000172767 877657 misassembled 40721089 40728705 590 8349 NC_000014.9 scf7180000172768 98.28 True fake: scaffold gap size wrong estimation (local) 40730482 40736889 10059 16477 NC_000014.9 scf7180000172768 99.41 True fake: scaffold gap size wrong estimation (local) 40736999 40755419 16565 35021 NC_000014.9 scf7180000172768 99.72 True fake: scaffold gap size wrong estimation (local) 40755879 40761380 35465 40966 NC_000014.9 scf7180000172768 99.95 True fake: scaffold gap size wrong estimation (local) 40761597 40772255 41065 51748 NC_000014.9 scf7180000172768 99.91 True fake: scaffold gap size wrong estimation (local) 40772424 40776766 51842 56027 NC_000014.9 scf7180000172768 96.27 True fake: scaffold gap size wrong estimation (local) 40776830 40800333 56325 80548 NC_000014.9 scf7180000172768 96.99 True fake: scaffold gap size wrong estimation (local) 40800482 40807282 80639 87442 NC_000014.9 scf7180000172768 99.6 True fake: scaffold gap size wrong estimation (local) 40807745 40810041 87624 89920 NC_000014.9 scf7180000172768 99.83 True fake: scaffold gap size wrong estimation (local) 40809323 40818053 90427 99158 NC_000014.9 scf7180000172768 99.89 True fake: scaffold gap size wrong estimation (local) 40818062 40825027 99395 106035 NC_000014.9 scf7180000172768 95.05 True fake: scaffold gap size wrong estimation (local) 40825988 40835556 106913 116483 NC_000014.9 scf7180000172768 99.69 True fake: scaffold gap size wrong estimation (local) 40836279 40837765 117146 118632 NC_000014.9 scf7180000172768 99.87 True indel: indel (<= 5bp) 40837767 40839374 118633 120240 NC_000014.9 scf7180000172768 99.81 True fake: scaffold gap size wrong estimation (local) 40841524 40844074 123913 126463 NC_000014.9 scf7180000172768 99.88 True fake: scaffold gap size wrong estimation (local) 40844336 40845825 126635 128126 NC_000014.9 scf7180000172768 99.46 True fake: scaffold gap size wrong estimation (local) 40846188 40848045 128462 130319 NC_000014.9 scf7180000172768 99.89 True fake: scaffold gap size wrong estimation (local) 40848287 40861793 130548 143884 NC_000014.9 scf7180000172768 98.64 True fake: not a misassembly (possible transposable element) 36379984 36380693 144614 143905 NC_000014.9 scf7180000172768 99.72 True fake: not a misassembly (possible transposable element) 40861721 40862285 144615 145179 NC_000014.9 scf7180000172768 99.82 True relocation, scaffold gap is present, inconsistency = 4481628 36358912 36380058 166341 145214 NC_000014.9 scf7180000172768 99.72 True relocation, scaffold gap is present, inconsistency = -4976338 41327779 41335219 173836 166372 NC_000014.9 scf7180000172768 99.54 True relocation, scaffold gap is present, inconsistency = 4972409 36342855 36353125 186241 176081 NC_000014.9 scf7180000172768 98.79 True fake: scaffold gap size wrong estimation (local) 36339234 36342684 189833 186385 NC_000014.9 scf7180000172768 99.65 True relocation, inconsistency = 13115728 49458413 49467536 189834 198957 NC_000014.9 scf7180000172768 99.95 True fake: scaffold gap size wrong estimation (local) 49468088 49502821 199507 234325 NC_000014.9 scf7180000172768 99.05 True fake: scaffold gap size wrong estimation (local) 49502992 49505980 234619 237648 NC_000014.9 scf7180000172768 99.63 True fake: scaffold gap size wrong estimation (local) 49506117 49511908 237750 243514 NC_000014.9 scf7180000172768 99.39 True fake: scaffold gap size wrong estimation (local) 49512006 49517304 243626 248954 NC_000014.9 scf7180000172768 99.74 True fake: scaffold gap size wrong estimation (local) 49517572 49528712 248987 260475 NC_000014.9 scf7180000172768 97.18 True fake: scaffold gap size wrong estimation (local) 49528961 49529698 260780 261518 NC_000014.9 scf7180000172768 99.59 True fake: scaffold gap size wrong estimation (local) 49529962 49530816 261682 262537 NC_000014.9 scf7180000172768 99.77 True fake: scaffold gap size wrong estimation (local) 49531036 49534290 262682 265874 NC_000014.9 scf7180000172768 97.93 True fake: scaffold gap size wrong estimation (local) 49535995 49536570 267469 268044 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 49536662 49538649 268129 270116 NC_000014.9 scf7180000172768 99.9 True fake: scaffold gap size wrong estimation (local) 49538791 49541770 270208 273187 NC_000014.9 scf7180000172768 99.93 True fake: scaffold gap size wrong estimation (local) 49542141 49545422 274432 277713 NC_000014.9 scf7180000172768 99.91 True indel: indel (> 5bp) 49545464 49547620 277714 279870 NC_000014.9 scf7180000172768 96.66 True indel: indel (> 5bp) 49547627 49551530 279871 283774 NC_000014.9 scf7180000172768 99.49 True indel: indel (> 5bp) 49551724 49552345 283885 284506 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 49552602 49554592 284838 286828 NC_000014.9 scf7180000172768 99.95 True fake: scaffold gap size wrong estimation (local) 49554829 49555781 287117 288084 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 49556746 49560731 289043 293028 NC_000014.9 scf7180000172768 99.67 True fake: scaffold gap size wrong estimation (local) 49561415 49562648 293718 294951 NC_000014.9 scf7180000172768 99.92 True fake: scaffold gap size wrong estimation (local) 49563456 49564082 295425 296051 NC_000014.9 scf7180000172768 96.81 True fake: scaffold gap size wrong estimation (local) 49564329 49565321 296794 297786 NC_000014.9 scf7180000172768 99.7 True local misassembly 49565464 49566284 297787 298607 NC_000014.9 scf7180000172768 97.44 True fake: scaffold gap size wrong estimation (local) 49566829 49568401 298898 300470 NC_000014.9 scf7180000172768 99.68 True fake: scaffold gap size wrong estimation (local) 49568989 49570031 301093 302135 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 49570250 49575077 302297 307154 NC_000014.9 scf7180000172768 99.32 True fake: scaffold gap size wrong estimation (local) 49575307 49580628 307265 312613 NC_000014.9 scf7180000172768 99.79 True fake: scaffold gap size wrong estimation (local) 49581200 49585254 313235 317308 NC_000014.9 scf7180000172768 99.9 True fake: not a misassembly (possible transposable element) 74694064 74694733 317309 317978 NC_000014.9 scf7180000172768 100.0 True fake: not a misassembly (possible transposable element) 49585365 49588888 317999 321522 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 49589125 49590222 321685 322782 NC_000014.9 scf7180000172768 99.91 True fake: scaffold gap size wrong estimation (local) 49590716 49591432 323587 324303 NC_000014.9 scf7180000172768 100.0 True relocation, scaffold gap is present, inconsistency = 55411787 105004670 105008799 325754 329920 NC_000014.9 scf7180000172768 99.52 True fake: not a misassembly (possible transposable element) 50299752 50300452 330621 329921 NC_000014.9 scf7180000172768 100.0 True fake: not a misassembly (possible transposable element) 105008870 105017267 330645 338969 NC_000014.9 scf7180000172768 98.76 True fake: scaffold gap size wrong estimation (local) 105017733 105018753 339492 340512 NC_000014.9 scf7180000172768 97.55 True fake: scaffold gap size wrong estimation (local) 105018926 105024508 340696 346314 NC_000014.9 scf7180000172768 99.84 True fake: scaffold gap size wrong estimation (local) 105024693 105025333 346632 347272 NC_000014.9 scf7180000172768 99.84 True local misassembly 105025426 105026017 347273 347864 NC_000014.9 scf7180000172768 96.62 True indel: indel (<= 5bp) 105026022 105026567 347865 348410 NC_000014.9 scf7180000172768 99.63 True fake: scaffold gap size wrong estimation (local) 105027860 105029192 348678 350011 NC_000014.9 scf7180000172768 99.7 True local misassembly 105026690 105027795 350084 351182 NC_000014.9 scf7180000172768 99.1 True fake: scaffold gap size wrong estimation (local) 105029291 105031802 351237 353660 NC_000014.9 scf7180000172768 96.03 True fake: scaffold gap size wrong estimation (local) 105032271 105035492 354054 357182 NC_000014.9 scf7180000172768 96.83 True fake: scaffold gap size wrong estimation (local) 105035686 105036445 357289 358048 NC_000014.9 scf7180000172768 99.87 True fake: scaffold gap size wrong estimation (local) 105037801 105039258 359473 360930 NC_000014.9 scf7180000172768 99.93 True fake: scaffold gap size wrong estimation (local) 105041495 105044244 361972 364721 NC_000014.9 scf7180000172768 99.71 True fake: scaffold gap size wrong estimation (local) 105044483 105045335 364934 365786 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105045553 105048512 365961 368980 NC_000014.9 scf7180000172768 99.83 True fake: scaffold gap size wrong estimation (local) 105049080 105052452 369457 372829 NC_000014.9 scf7180000172768 99.91 True local misassembly 105053408 105054433 372953 373978 NC_000014.9 scf7180000172768 99.9 True fake: scaffold gap size wrong estimation (local) 105055032 105057524 374697 377195 NC_000014.9 scf7180000172768 99.88 True fake: scaffold gap size wrong estimation (local) 105057931 105063442 377603 383062 NC_000014.9 scf7180000172768 98.92 True fake: scaffold gap size wrong estimation (local) 105064105 105069383 383845 388924 NC_000014.9 scf7180000172768 95.92 True fake: scaffold gap size wrong estimation (local) 105069538 105078593 389162 398100 NC_000014.9 scf7180000172768 98.21 True fake: scaffold gap size wrong estimation (local) 105079791 105081051 399175 400435 NC_000014.9 scf7180000172768 98.42 True fake: scaffold gap size wrong estimation (local) 105081143 105081725 400537 401117 NC_000014.9 scf7180000172768 99.66 True fake: scaffold gap size wrong estimation (local) 105082435 105101168 401731 420743 NC_000014.9 scf7180000172768 97.83 True fake: scaffold gap size wrong estimation (local) 105101846 105104584 421387 424126 NC_000014.9 scf7180000172768 99.78 True fake: scaffold gap size wrong estimation (local) 105104795 105107741 424298 427240 NC_000014.9 scf7180000172768 99.56 True fake: scaffold gap size wrong estimation (local) 105107875 105108880 427705 428710 NC_000014.9 scf7180000172768 99.9 True fake: not a misassembly (possible transposable element) 34447402 34448051 429423 428774 NC_000014.9 scf7180000172768 100.0 True fake: not a misassembly (possible transposable element) 105109599 105110333 429444 430168 NC_000014.9 scf7180000172768 98.5 True fake: scaffold gap size wrong estimation (local) 105114068 105114866 430703 431501 NC_000014.9 scf7180000172768 99.0 True fake: scaffold gap size wrong estimation (local) 105115051 105116391 431881 433221 NC_000014.9 scf7180000172768 99.55 True fake: scaffold gap size wrong estimation (local) 105116594 105127543 433399 444310 NC_000014.9 scf7180000172768 99.35 True fake: scaffold gap size wrong estimation (local) 105127716 105128582 444517 445383 NC_000014.9 scf7180000172768 99.88 True fake: scaffold gap size wrong estimation (local) 105128661 105130080 445493 446932 NC_000014.9 scf7180000172768 99.72 True fake: scaffold gap size wrong estimation (local) 105131088 105132147 447897 448959 NC_000014.9 scf7180000172768 99.33 True fake: scaffold gap size wrong estimation (local) 105132388 105135222 449171 452009 NC_000014.9 scf7180000172768 99.79 True fake: scaffold gap size wrong estimation (local) 105135767 105159729 452485 476295 NC_000014.9 scf7180000172768 99.09 True local misassembly 105159987 105168180 476331 484441 NC_000014.9 scf7180000172768 96.34 True fake: scaffold gap size wrong estimation (local) 105168914 105185144 485189 501530 NC_000014.9 scf7180000172768 99.26 True fake: scaffold gap size wrong estimation (local) 105187155 105188403 503337 504585 NC_000014.9 scf7180000172768 99.92 True fake: scaffold gap size wrong estimation (local) 105188633 105191485 505451 508303 NC_000014.9 scf7180000172768 99.82 True indel: indel (<= 5bp) 105191486 105192227 508305 509046 NC_000014.9 scf7180000172768 100.0 True local misassembly 105192696 105206283 509047 522634 NC_000014.9 scf7180000172768 99.9 True local misassembly 105206846 105214476 522897 530527 NC_000014.9 scf7180000172768 99.88 True indel: indel (> 5bp) 105214502 105215724 530528 531750 NC_000014.9 scf7180000172768 99.92 True indel: indel (<= 5bp) 105215727 105222646 531751 538670 NC_000014.9 scf7180000172768 99.9 True fake: scaffold gap size wrong estimation (local) 105222872 105224219 538852 540199 NC_000014.9 scf7180000172768 99.85 True fake: scaffold gap size wrong estimation (local) 105224724 105229654 540754 545649 NC_000014.9 scf7180000172768 97.09 True fake: scaffold gap size wrong estimation (extensive) 105240890 105242478 549060 550648 NC_000014.9 scf7180000172768 99.94 True fake: scaffold gap size wrong estimation (local) 105243064 105243781 551184 551901 NC_000014.9 scf7180000172768 99.86 True fake: scaffold gap size wrong estimation (local) 105243782 105245146 552172 553536 NC_000014.9 scf7180000172768 99.85 True local misassembly 105245292 105246423 553537 554668 NC_000014.9 scf7180000172768 97.08 True fake: scaffold gap size wrong estimation (local) 105246529 105248571 554959 556940 NC_000014.9 scf7180000172768 96.98 True fake: scaffold gap size wrong estimation (local) 105248684 105254290 557102 562673 NC_000014.9 scf7180000172768 99.36 True fake: scaffold gap size wrong estimation (local) 105254527 105258295 562825 566671 NC_000014.9 scf7180000172768 97.99 True fake: scaffold gap size wrong estimation (local) 105258694 105262974 566991 571271 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105263239 105263828 571567 572156 NC_000014.9 scf7180000172768 99.66 True fake: scaffold gap size wrong estimation (local) 105265209 105270190 573417 578405 NC_000014.9 scf7180000172768 99.98 True fake: scaffold gap size wrong estimation (local) 105270641 105271956 578734 580049 NC_000014.9 scf7180000172768 100.0 True local misassembly 105272245 105274051 580050 581856 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105274271 105275918 582101 583748 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105278803 105280873 586341 588411 NC_000014.9 scf7180000172768 99.95 True local misassembly 105281456 105282765 588714 590023 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105282919 105288240 590198 595519 NC_000014.9 scf7180000172768 99.98 True fake: scaffold gap size wrong estimation (local) 105289046 105289702 596313 596969 NC_000014.9 scf7180000172768 99.85 True fake: scaffold gap size wrong estimation (local) 105290357 105291512 597527 598682 NC_000014.9 scf7180000172768 98.96 True fake: scaffold gap size wrong estimation (local) 105291891 105295836 599150 602916 NC_000014.9 scf7180000172768 95.34 True fake: scaffold gap size wrong estimation (local) 105298057 105298590 605142 605675 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105299153 105302150 606264 609261 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105302386 105302964 609371 609949 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105303437 105306435 610453 613523 NC_000014.9 scf7180000172768 98.26 True fake: scaffold gap size wrong estimation (local) 105306874 105308498 613924 615634 NC_000014.9 scf7180000172768 99.51 True fake: scaffold gap size wrong estimation (local) 105308721 105309781 615814 616874 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105311216 105314633 618295 621712 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105314933 105318490 621985 625542 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105320237 105321015 626886 627664 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105321016 105322009 628198 629191 NC_000014.9 scf7180000172768 99.8 True fake: scaffold gap size wrong estimation (local) 105322488 105331142 629854 638410 NC_000014.9 scf7180000172768 98.87 True fake: scaffold gap size wrong estimation (local) 105331229 105342378 638517 649655 NC_000014.9 scf7180000172768 99.68 True fake: scaffold gap size wrong estimation (local) 105342492 105343822 649864 651194 NC_000014.9 scf7180000172768 98.5 True local misassembly 105344045 105344887 651195 652037 NC_000014.9 scf7180000172768 99.88 True fake: scaffold gap size wrong estimation (local) 105345377 105346605 652610 653838 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105346927 105359607 654142 666226 NC_000014.9 scf7180000172768 95.23 True fake: scaffold gap size wrong estimation (local) 105359863 105360433 666626 667196 NC_000014.9 scf7180000172768 100.0 True indel: indel (> 5bp) 105360514 105361739 667237 668462 NC_000014.9 scf7180000172768 98.21 True fake: scaffold gap size wrong estimation (local) 105362792 105370304 669554 677055 NC_000014.9 scf7180000172768 98.08 True fake: scaffold gap size wrong estimation (local) 105370723 105372710 677434 679421 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105372890 105375261 679646 682143 NC_000014.9 scf7180000172768 96.5 True fake: scaffold gap size wrong estimation (local) 105375485 105393757 682294 700571 NC_000014.9 scf7180000172768 99.98 True fake: scaffold gap size wrong estimation (local) 105394032 105396515 700847 703330 NC_000014.9 scf7180000172768 100.0 True fake: scaffold gap size wrong estimation (local) 105396747 105401424 703575 708252 NC_000014.9 scf7180000172768 99.98 True fake: scaffold gap size wrong estimation (local) 105401635 105402521 708455 709386 NC_000014.9 scf7180000172768 99.89 True fake: scaffold gap size wrong estimation (local) 105402758 105408260 709481 714927 NC_000014.9 scf7180000172768 98.53 True fake: scaffold gap size wrong estimation (local) 105408502 105417051 715192 723773 NC_000014.9 scf7180000172768 98.32 True fake: scaffold gap size wrong estimation (local) 105417666 105419809 724366 726509 NC_000014.9 scf7180000172768 99.86 True fake: scaffold gap size wrong estimation (local) 105420313 105424324 726964 731105 NC_000014.9 scf7180000172768 99.95 True fake: scaffold gap size wrong estimation (local) 105424740 105429371 731348 736046 NC_000014.9 scf7180000172768 99.57 True fake: scaffold gap size wrong estimation (local) 105429963 105431254 736585 737876 NC_000014.9 scf7180000172768 98.14 True fake: scaffold gap size wrong estimation (local) 105432504 105434686 739178 741398 NC_000014.9 scf7180000172768 99.08 True fake: scaffold gap size wrong estimation (local) 105434773 105441640 741543 748428 NC_000014.9 scf7180000172768 97.73 True fake: scaffold gap size wrong estimation (local) 105441778 105442725 748719 749666 NC_000014.9 scf7180000172768 99.58 True local misassembly 105442832 105443815 749667 750650 NC_000014.9 scf7180000172768 99.39 True fake: scaffold gap size wrong estimation (local) 105444355 105451774 751420 758685 NC_000014.9 scf7180000172768 97.72 True fake: scaffold gap size wrong estimation (local) 105452053 105454655 758928 761530 NC_000014.9 scf7180000172768 99.92 True fake: scaffold gap size wrong estimation (local) 105454759 105459129 761669 766029 NC_000014.9 scf7180000172768 99.4 True fake: scaffold gap size wrong estimation (local) 105460120 105462347 766380 768647 NC_000014.9 scf7180000172768 98.1 True fake: scaffold gap size wrong estimation (local) 105462432 105477661 768759 783972 NC_000014.9 scf7180000172768 99.57 True fake: scaffold gap size wrong estimation (local) 105477743 105501219 785521 808976 NC_000014.9 scf7180000172768 99.62 True fake: scaffold gap size wrong estimation (local) 105501405 105502043 809189 809827 NC_000014.9 scf7180000172768 99.84 True fake: scaffold gap size wrong estimation (local) 105502298 105506079 810166 813932 NC_000014.9 scf7180000172768 99.12 True fake: scaffold gap size wrong estimation (local) 105507239 105510277 815019 818123 NC_000014.9 scf7180000172768 99.93 True fake: scaffold gap size wrong estimation (local) 105511341 105516758 819030 824573 NC_000014.9 scf7180000172768 99.42 True fake: scaffold gap size wrong estimation (local) 105516952 105519109 825165 827322 NC_000014.9 scf7180000172768 99.77 True fake: scaffold gap size wrong estimation (local) 105519884 105520859 828188 829162 NC_000014.9 scf7180000172768 99.8 True relocation, scaffold gap is present, inconsistency = 95836 105619919 105621619 832386 834086 NC_000014.9 scf7180000172768 98.88 True indel: indel (<= 5bp) 105621821 105622517 834290 834986 NC_000014.9 scf7180000172768 99.71 True indel: indel (<= 5bp) 105622518 105623084 834991 835557 NC_000014.9 scf7180000172768 100.0 True relocation, scaffold gap is present, inconsistency = -100032 105523073 105523812 835578 836317 NC_000014.9 scf7180000172768 100.0 True local misassembly 105524088 105525124 836442 837478 NC_000014.9 scf7180000172768 97.59 True relocation, scaffold gap is present, inconsistency = 115872 105641017 105641921 837499 838405 NC_000014.9 scf7180000172768 99.45 True indel: indel (> 5bp) 105642284 105644988 838752 841459 NC_000014.9 scf7180000172768 97.86 True relocation, scaffold gap is present, inconsistency = -119677 105525332 105535390 841480 851282 NC_000014.9 scf7180000172768 97.42 True fake: scaffold gap size wrong estimation (local) 105535925 105539801 851737 855581 NC_000014.9 scf7180000172768 98.99 True fake: scaffold gap size wrong estimation (local) 105540494 105545568 856298 861383 NC_000014.9 scf7180000172768 99.9 True fake: scaffold gap size wrong estimation (local) 105548599 105549441 864366 865208 NC_000014.9 scf7180000172768 99.05 True fake: scaffold gap size wrong estimation (local) 105549442 105551265 865384 867207 NC_000014.9 scf7180000172768 100.0 True local misassembly 105551498 105552097 867208 867807 NC_000014.9 scf7180000172768 96.67 True fake: scaffold gap size wrong estimation (local) 105552353 105553144 868262 869052 NC_000014.9 scf7180000172768 98.24 True fake: scaffold gap size wrong estimation (local) 105553730 105554565 869504 870339 NC_000014.9 scf7180000172768 99.04 True fake: scaffold gap size wrong estimation (local) 105555046 105555859 870790 871606 NC_000014.9 scf7180000172768 97.06 True fake: scaffold gap size wrong estimation (local) 105555766 105556427 872109 872770 NC_000014.9 scf7180000172768 99.85 True fake: scaffold gap size wrong estimation (local) 105557515 105558341 874098 874924 NC_000014.9 scf7180000172768 99.52 True CONTIG scf7180000172768 874924 misassembled 54553172 54553870 852 154 NC_000014.9 scf7180000172769 99.86 True fake: scaffold gap size wrong estimation (local) 54548981 54553033 4989 937 NC_000014.9 scf7180000172769 99.98 True local misassembly 54547258 54548780 7404 5882 NC_000014.9 scf7180000172769 98.69 True local misassembly 54544372 54547020 10053 7405 NC_000014.9 scf7180000172769 99.96 True fake: scaffold gap size wrong estimation (local) 54534328 54544150 20036 10210 NC_000014.9 scf7180000172769 99.96 True fake: scaffold gap size wrong estimation (local) 54530774 54534216 23624 20182 NC_000014.9 scf7180000172769 99.97 True local misassembly 54528230 54530236 25631 23625 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 54526362 54528019 27426 25770 NC_000014.9 scf7180000172769 99.88 True fake: scaffold gap size wrong estimation (local) 54523200 54525931 30642 27766 NC_000014.9 scf7180000172769 95.41 True fake: scaffold gap size wrong estimation (local) 54521788 54523076 32045 30757 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 54519117 54521207 34618 32519 NC_000014.9 scf7180000172769 99.32 True fake: scaffold gap size wrong estimation (local) 54515293 54518291 38396 35398 NC_000014.9 scf7180000172769 99.97 True fake: scaffold gap size wrong estimation (local) 54507525 54515112 46142 38542 NC_000014.9 scf7180000172769 99.91 True fake: scaffold gap size wrong estimation (local) 54506687 54507330 47054 46411 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 54504968 54506438 48642 47172 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 54500841 54504372 52769 49209 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 54499436 54500636 54071 52871 NC_000014.9 scf7180000172769 99.83 True fake: scaffold gap size wrong estimation (local) 54496907 54499244 56602 54265 NC_000014.9 scf7180000172769 99.96 True fake: scaffold gap size wrong estimation (local) 54487599 54495785 65745 57709 NC_000014.9 scf7180000172769 97.44 True relocation, scaffold gap is present, inconsistency = 5672087 48798536 48815475 65782 83078 NC_000014.9 scf7180000172769 97.9 True fake: scaffold gap size wrong estimation (local) 48816106 48817028 83407 84329 NC_000014.9 scf7180000172769 99.89 True fake: scaffold gap size wrong estimation (local) 48817467 48820128 85370 88031 NC_000014.9 scf7180000172769 99.62 True fake: scaffold gap size wrong estimation (local) 48820129 48821384 88047 89302 NC_000014.9 scf7180000172769 96.5 True fake: scaffold gap size wrong estimation (local) 48821385 48822331 89426 90372 NC_000014.9 scf7180000172769 99.58 True fake: scaffold gap size wrong estimation (local) 48822578 48823937 90611 91970 NC_000014.9 scf7180000172769 99.93 True fake: scaffold gap size wrong estimation (local) 48824230 48829944 92220 97943 NC_000014.9 scf7180000172769 99.77 True fake: scaffold gap size wrong estimation (local) 48830290 48831119 98234 99063 NC_000014.9 scf7180000172769 99.88 True fake: scaffold gap size wrong estimation (local) 48831283 48837318 99215 105272 NC_000014.9 scf7180000172769 99.82 True fake: scaffold gap size wrong estimation (local) 48837405 48840394 105379 108368 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 48840649 48862130 108550 129878 NC_000014.9 scf7180000172769 99.03 True fake: scaffold gap size wrong estimation (local) 48862218 48878903 129993 146659 NC_000014.9 scf7180000172769 98.72 True fake: scaffold gap size wrong estimation (local) 48879078 48881280 146760 148962 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 48881566 48882124 149302 149860 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 48882389 48888810 150006 156302 NC_000014.9 scf7180000172769 97.96 True fake: scaffold gap size wrong estimation (local) 48889064 48902861 156549 170365 NC_000014.9 scf7180000172769 99.97 True fake: scaffold gap size wrong estimation (local) 48903045 48921088 170507 188464 NC_000014.9 scf7180000172769 99.37 True fake: scaffold gap size wrong estimation (local) 48921300 48927580 188625 194905 NC_000014.9 scf7180000172769 99.95 True fake: scaffold gap size wrong estimation (local) 48927844 48935970 195179 203382 NC_000014.9 scf7180000172769 99.94 True fake: scaffold gap size wrong estimation (local) 48936205 48938436 203643 205871 NC_000014.9 scf7180000172769 99.87 True fake: scaffold gap size wrong estimation (local) 48939026 48940843 207545 209350 NC_000014.9 scf7180000172769 99.33 True fake: scaffold gap size wrong estimation (local) 48941351 48953683 209809 222157 NC_000014.9 scf7180000172769 99.79 True fake: scaffold gap size wrong estimation (local) 48953788 48977135 222244 245609 NC_000014.9 scf7180000172769 99.7 True fake: scaffold gap size wrong estimation (local) 48977345 49002847 245739 271217 NC_000014.9 scf7180000172769 99.73 True fake: scaffold gap size wrong estimation (local) 49003127 49020564 271374 288812 NC_000014.9 scf7180000172769 99.87 True fake: scaffold gap size wrong estimation (local) 49023357 49025712 289069 291456 NC_000014.9 scf7180000172769 99.37 True fake: scaffold gap size wrong estimation (local) 49026025 49034668 291791 300394 NC_000014.9 scf7180000172769 99.46 True fake: scaffold gap size wrong estimation (local) 49034839 49038702 300499 304362 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 49038622 49065026 304841 331339 NC_000014.9 scf7180000172769 97.58 True fake: scaffold gap size wrong estimation (local) 49066091 49066773 332534 333216 NC_000014.9 scf7180000172769 99.71 True fake: scaffold gap size wrong estimation (local) 49067584 49070373 333978 336754 NC_000014.9 scf7180000172769 99.28 True fake: not a misassembly (possible transposable element) 57728933 57729611 337433 336755 NC_000014.9 scf7180000172769 99.72 True fake: not a misassembly (possible transposable element) 49070350 49074869 337468 341987 NC_000014.9 scf7180000172769 99.91 True fake: scaffold gap size wrong estimation (local) 49075049 49093679 342128 360879 NC_000014.9 scf7180000172769 98.98 True fake: scaffold gap size wrong estimation (local) 49094390 49096783 361489 363882 NC_000014.9 scf7180000172769 99.75 True fake: scaffold gap size wrong estimation (local) 49102725 49110372 373023 380670 NC_000014.9 scf7180000172769 99.88 True fake: scaffold gap size wrong estimation (local) 49110635 49119571 380806 389750 NC_000014.9 scf7180000172769 99.81 True fake: scaffold gap size wrong estimation (local) 49119804 49123738 389892 393830 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 49124459 49126195 394821 396556 NC_000014.9 scf7180000172769 99.77 True fake: scaffold gap size wrong estimation (local) 49127959 49128626 397082 397749 NC_000014.9 scf7180000172769 98.8 True fake: not a misassembly (possible transposable element) 31816876 31817404 397770 398298 NC_000014.9 scf7180000172769 99.81 True fake: not a misassembly (possible transposable element) 49127132 49127791 398319 398978 NC_000014.9 scf7180000172769 99.7 True relocation, scaffold gap is present, inconsistency = -17311064 31817452 31819922 399703 402084 NC_000014.9 scf7180000172769 96.21 True fake: scaffold gap size wrong estimation (local) 31820155 31820691 402336 402872 NC_000014.9 scf7180000172769 99.81 True fake: scaffold gap size wrong estimation (local) 31821126 31831060 403256 413212 NC_000014.9 scf7180000172769 99.79 True fake: scaffold gap size wrong estimation (local) 31831287 31834192 413367 416272 NC_000014.9 scf7180000172769 99.93 True fake: scaffold gap size wrong estimation (local) 31834451 31840319 416497 422368 NC_000014.9 scf7180000172769 99.74 True fake: scaffold gap size wrong estimation (local) 31840403 31841921 422424 423935 NC_000014.9 scf7180000172769 98.6 True fake: scaffold gap size wrong estimation (local) 31842126 31846783 424131 428805 NC_000014.9 scf7180000172769 99.46 True fake: scaffold gap size wrong estimation (local) 31846952 31860049 428924 442022 NC_000014.9 scf7180000172769 99.85 True fake: scaffold gap size wrong estimation (local) 31860236 31863414 442119 445299 NC_000014.9 scf7180000172769 99.78 True fake: scaffold gap size wrong estimation (local) 31863595 31865133 445445 446973 NC_000014.9 scf7180000172769 99.29 True fake: scaffold gap size wrong estimation (local) 31865236 31866226 447039 448029 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 31866633 31867900 448428 449695 NC_000014.9 scf7180000172769 99.61 True fake: scaffold gap size wrong estimation (local) 31869516 31890400 451453 472253 NC_000014.9 scf7180000172769 99.31 True fake: scaffold gap size wrong estimation (local) 31890650 31907986 472429 489809 NC_000014.9 scf7180000172769 99.73 True fake: scaffold gap size wrong estimation (local) 31908428 31910418 490428 492418 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 31910906 31914257 493561 496912 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 31914906 31918398 497580 500986 NC_000014.9 scf7180000172769 97.41 True fake: scaffold gap size wrong estimation (local) 31918384 31923794 501189 506404 NC_000014.9 scf7180000172769 96.1 True fake: scaffold gap size wrong estimation (local) 31924001 31928584 506570 511153 NC_000014.9 scf7180000172769 99.87 True indel: indel (<= 5bp) 31929002 31931225 511575 513798 NC_000014.9 scf7180000172769 99.73 True local misassembly 31931875 31933250 513799 515174 NC_000014.9 scf7180000172769 99.71 True fake: scaffold gap size wrong estimation (local) 31933468 31937147 515481 519160 NC_000014.9 scf7180000172769 99.78 True fake: scaffold gap size wrong estimation (local) 31937404 31938369 519342 520303 NC_000014.9 scf7180000172769 99.59 True fake: scaffold gap size wrong estimation (local) 31938519 31958394 520475 540360 NC_000014.9 scf7180000172769 99.61 True fake: scaffold gap size wrong estimation (local) 31958996 31961024 540890 542918 NC_000014.9 scf7180000172769 99.95 True fake: scaffold gap size wrong estimation (local) 31961335 31977798 543262 560051 NC_000014.9 scf7180000172769 97.92 True fake: scaffold gap size wrong estimation (local) 31978066 31979062 560256 561253 NC_000014.9 scf7180000172769 99.3 True fake: scaffold gap size wrong estimation (local) 31981013 31995787 563163 577960 NC_000014.9 scf7180000172769 99.68 True fake: scaffold gap size wrong estimation (local) 31996005 31997267 578213 579468 NC_000014.9 scf7180000172769 98.71 True fake: scaffold gap size wrong estimation (local) 31997542 32002283 579664 584424 NC_000014.9 scf7180000172769 99.83 True fake: scaffold gap size wrong estimation (local) 32002490 32003995 584562 586067 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32004193 32021684 586223 603951 NC_000014.9 scf7180000172769 98.8 True fake: scaffold gap size wrong estimation (local) 32022039 32023960 604230 606144 NC_000014.9 scf7180000172769 99.53 True fake: scaffold gap size wrong estimation (local) 32024123 32032481 606294 614695 NC_000014.9 scf7180000172769 99.82 True fake: scaffold gap size wrong estimation (local) 32032780 32036019 614799 618159 NC_000014.9 scf7180000172769 96.89 True fake: scaffold gap size wrong estimation (local) 32036220 32055764 618310 637934 NC_000014.9 scf7180000172769 99.58 True fake: scaffold gap size wrong estimation (local) 32055907 32064369 638038 646390 NC_000014.9 scf7180000172769 98.59 True fake: scaffold gap size wrong estimation (local) 32064642 32067712 646540 649610 NC_000014.9 scf7180000172769 99.84 True fake: scaffold gap size wrong estimation (local) 32067872 32081454 649704 663207 NC_000014.9 scf7180000172769 99.16 True fake: scaffold gap size wrong estimation (local) 32081566 32082579 663314 664327 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32082703 32101771 664454 683483 NC_000014.9 scf7180000172769 99.78 True fake: scaffold gap size wrong estimation (local) 32101950 32106198 683643 687891 NC_000014.9 scf7180000172769 99.98 True fake: scaffold gap size wrong estimation (local) 32106381 32112678 687980 694306 NC_000014.9 scf7180000172769 99.86 True fake: scaffold gap size wrong estimation (local) 32112857 32113974 694524 695641 NC_000014.9 scf7180000172769 100.0 True local misassembly 32114137 32115458 695642 696963 NC_000014.9 scf7180000172769 95.61 True local misassembly 32116516 32118294 697089 698867 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32118464 32127015 699009 707572 NC_000014.9 scf7180000172769 99.99 True fake: scaffold gap size wrong estimation (local) 32128274 32130228 708773 710727 NC_000014.9 scf7180000172769 99.9 True fake: scaffold gap size wrong estimation (local) 32130799 32131680 711448 712329 NC_000014.9 scf7180000172769 99.88 True fake: scaffold gap size wrong estimation (local) 32134058 32137781 714301 718087 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32138556 32140083 718647 720174 NC_000014.9 scf7180000172769 99.93 True fake: not a misassembly (possible transposable element) 76790115 76792065 722539 720589 NC_000014.9 scf7180000172769 100.0 True fake: not a misassembly (possible transposable element) 32140577 32143326 722560 725309 NC_000014.9 scf7180000172769 99.96 True fake: scaffold gap size wrong estimation (local) 32143519 32144505 725424 726410 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32144745 32164172 726610 746443 NC_000014.9 scf7180000172769 96.73 True fake: scaffold gap size wrong estimation (local) 32164420 32170848 746647 753042 NC_000014.9 scf7180000172769 99.31 True fake: scaffold gap size wrong estimation (local) 32171119 32172381 753250 754513 NC_000014.9 scf7180000172769 99.53 True fake: scaffold gap size wrong estimation (local) 32172573 32175106 754691 757221 NC_000014.9 scf7180000172769 99.68 True fake: scaffold gap size wrong estimation (local) 32175375 32185808 757420 767973 NC_000014.9 scf7180000172769 98.88 True fake: scaffold gap size wrong estimation (local) 32185977 32186922 768246 769191 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32187494 32188499 769598 770603 NC_000014.9 scf7180000172769 98.01 True fake: scaffold gap size wrong estimation (local) 32189260 32193912 771031 775690 NC_000014.9 scf7180000172769 99.68 True fake: scaffold gap size wrong estimation (local) 32194130 32195246 775855 776971 NC_000014.9 scf7180000172769 99.91 True fake: scaffold gap size wrong estimation (local) 32195381 32208489 777263 790272 NC_000014.9 scf7180000172769 98.48 True fake: scaffold gap size wrong estimation (local) 32209758 32210815 790542 791599 NC_000014.9 scf7180000172769 100.0 True local misassembly 32208460 32209772 791647 792959 NC_000014.9 scf7180000172769 99.85 True fake: scaffold gap size wrong estimation (local) 32211050 32211888 793411 794249 NC_000014.9 scf7180000172769 100.0 True local misassembly 32212056 32213192 794250 795386 NC_000014.9 scf7180000172769 98.24 True fake: scaffold gap size wrong estimation (local) 32213193 32213787 795410 796004 NC_000014.9 scf7180000172769 99.83 True fake: scaffold gap size wrong estimation (local) 32213788 32214308 796075 796595 NC_000014.9 scf7180000172769 98.85 True fake: scaffold gap size wrong estimation (local) 32215085 32217007 797210 799132 NC_000014.9 scf7180000172769 99.95 True local misassembly 32217278 32219990 799133 801845 NC_000014.9 scf7180000172769 99.45 True indel: indel (> 5bp) 32219991 32220626 801862 802497 NC_000014.9 scf7180000172769 99.84 True fake: scaffold gap size wrong estimation (local) 32220856 32227628 802705 809471 NC_000014.9 scf7180000172769 99.9 True fake: scaffold gap size wrong estimation (local) 32227813 32228671 809616 810474 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32229002 32234049 810766 815813 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32239878 32260442 822867 843249 NC_000014.9 scf7180000172769 98.88 True fake: scaffold gap size wrong estimation (local) 32260705 32272838 843470 855726 NC_000014.9 scf7180000172769 99.2 True fake: scaffold gap size wrong estimation (local) 32272892 32274629 856096 857833 NC_000014.9 scf7180000172769 99.48 True fake: scaffold gap size wrong estimation (local) 32277591 32289190 860714 872211 NC_000014.9 scf7180000172769 98.77 True indel: indel (<= 5bp) 32289357 32290332 872380 873355 NC_000014.9 scf7180000172769 99.49 True fake: scaffold gap size wrong estimation (local) 32290582 32292065 873690 875173 NC_000014.9 scf7180000172769 99.93 True fake: scaffold gap size wrong estimation (local) 32292855 32295153 875986 878284 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32295258 32297033 878439 880214 NC_000014.9 scf7180000172769 100.0 True fake: scaffold gap size wrong estimation (local) 32297539 32307143 880646 890290 NC_000014.9 scf7180000172769 99.98 True fake: not a misassembly (possible transposable element) 82983616 82984278 890311 890973 NC_000014.9 scf7180000172769 100.0 True fake: not a misassembly (possible transposable element) 32309569 32310345 890974 891750 NC_000014.9 scf7180000172769 100.0 True local misassembly 32307045 32316482 891771 900918 NC_000014.9 scf7180000172769 96.91 True CONTIG scf7180000172769 900918 misassembled 104795802 104806617 10886 9 NC_000014.9 scf7180000172770 99.67 True fake: scaffold gap size wrong estimation (local) 104765219 104795514 41403 11148 NC_000014.9 scf7180000172770 99.81 True fake: scaffold gap size wrong estimation (local) 104762857 104764666 43617 41802 NC_000014.9 scf7180000172770 99.61 True fake: scaffold gap size wrong estimation (local) 104751619 104762671 55014 43835 NC_000014.9 scf7180000172770 98.87 True fake: scaffold gap size wrong estimation (local) 104747822 104751040 58747 55529 NC_000014.9 scf7180000172770 99.97 True fake: scaffold gap size wrong estimation (local) 104744518 104747640 62030 58908 NC_000014.9 scf7180000172770 99.84 True fake: scaffold gap size wrong estimation (local) 104738267 104744517 69311 63061 NC_000014.9 scf7180000172770 99.89 True indel: indel (<= 5bp) 104736903 104738121 70672 69454 NC_000014.9 scf7180000172770 99.84 True fake: scaffold gap size wrong estimation (local) 104721207 104736805 86148 70765 NC_000014.9 scf7180000172770 97.75 True fake: scaffold gap size wrong estimation (local) 104716966 104720474 90376 86908 NC_000014.9 scf7180000172770 98.63 True fake: scaffold gap size wrong estimation (local) 104705418 104716805 102001 90559 NC_000014.9 scf7180000172770 99.89 True fake: scaffold gap size wrong estimation (local) 104672140 104705214 135297 102173 NC_000014.9 scf7180000172770 98.51 True fake: scaffold gap size wrong estimation (local) 104669665 104670627 137851 136889 NC_000014.9 scf7180000172770 99.79 True fake: scaffold gap size wrong estimation (local) 104667013 104667565 140477 139925 NC_000014.9 scf7180000172770 99.82 True fake: scaffold gap size wrong estimation (local) 104663517 104666787 144166 140884 NC_000014.9 scf7180000172770 99.66 True fake: scaffold gap size wrong estimation (local) 104655229 104662721 152977 145422 NC_000014.9 scf7180000172770 99.65 True relocation, inconsistency = 20225916 84426284 84429312 152978 156006 NC_000014.9 scf7180000172770 99.87 True fake: scaffold gap size wrong estimation (local) 84429566 84433432 156211 160077 NC_000014.9 scf7180000172770 99.95 True fake: scaffold gap size wrong estimation (local) 84433687 84438804 160262 165362 NC_000014.9 scf7180000172770 99.53 True fake: scaffold gap size wrong estimation (local) 84439063 84452274 165469 179004 NC_000014.9 scf7180000172770 97.38 True fake: scaffold gap size wrong estimation (local) 84452533 84480416 179207 207150 NC_000014.9 scf7180000172770 99.44 True fake: scaffold gap size wrong estimation (local) 84480630 84489380 207378 216083 NC_000014.9 scf7180000172770 99.37 True fake: scaffold gap size wrong estimation (local) 84489555 84500465 216176 227086 NC_000014.9 scf7180000172770 99.92 True fake: scaffold gap size wrong estimation (local) 84500693 84501787 227237 228331 NC_000014.9 scf7180000172770 99.45 True fake: scaffold gap size wrong estimation (local) 84501917 84503286 228528 229897 NC_000014.9 scf7180000172770 99.78 True fake: scaffold gap size wrong estimation (local) 84504254 84511213 230764 237835 NC_000014.9 scf7180000172770 99.34 True fake: scaffold gap size wrong estimation (local) 84512605 84513257 239205 239857 NC_000014.9 scf7180000172770 99.69 True fake: scaffold gap size wrong estimation (local) 84513384 84571112 239944 298078 NC_000014.9 scf7180000172770 98.99 True fake: scaffold gap size wrong estimation (local) 84571306 84587985 298193 314780 NC_000014.9 scf7180000172770 99.3 True fake: scaffold gap size wrong estimation (local) 84588175 84593166 314989 319980 NC_000014.9 scf7180000172770 99.56 True fake: scaffold gap size wrong estimation (local) 84593167 84594145 320691 321669 NC_000014.9 scf7180000172770 100.0 True fake: not a misassembly (possible transposable element) 89513726 89515197 323141 321670 NC_000014.9 scf7180000172770 99.59 True fake: not a misassembly (possible transposable element) 84594434 84595846 323162 324574 NC_000014.9 scf7180000172770 100.0 True local misassembly 84596528 84597364 324575 325411 NC_000014.9 scf7180000172770 99.64 True fake: not a misassembly (possible transposable element) 89511309 89511914 326039 325434 NC_000014.9 scf7180000172770 99.83 True fake: not a misassembly (possible transposable element) 84597826 84600523 326060 328778 NC_000014.9 scf7180000172770 99.96 True fake: scaffold gap size wrong estimation (local) 84600798 84624905 328966 353128 NC_000014.9 scf7180000172770 99.47 True fake: scaffold gap size wrong estimation (local) 84625102 84649932 353260 378254 NC_000014.9 scf7180000172770 99.14 True fake: scaffold gap size wrong estimation (local) 84650227 84651641 378345 379919 NC_000014.9 scf7180000172770 99.14 True indel: indel (> 5bp) 84651774 84654184 380059 382477 NC_000014.9 scf7180000172770 97.36 True fake: scaffold gap size wrong estimation (local) 84654360 84661274 382614 389527 NC_000014.9 scf7180000172770 99.62 True indel: stretch of mismatches 84661481 84683666 389734 412141 NC_000014.9 scf7180000172770 98.33 True fake: scaffold gap size wrong estimation (local) 84683948 84713584 412467 442848 NC_000014.9 scf7180000172770 96.87 True fake: scaffold gap size wrong estimation (local) 84713790 84723846 442978 453030 NC_000014.9 scf7180000172770 99.82 True fake: scaffold gap size wrong estimation (local) 84724077 84729982 453080 459012 NC_000014.9 scf7180000172770 99.63 True fake: scaffold gap size wrong estimation (local) 84731024 84731596 459162 459734 NC_000014.9 scf7180000172770 100.0 True local misassembly 84730251 84731032 460191 460972 NC_000014.9 scf7180000172770 99.87 True fake: scaffold gap size wrong estimation (local) 84731154 84762855 461388 493099 NC_000014.9 scf7180000172770 97.25 True fake: scaffold gap size wrong estimation (local) 84762901 84765597 493187 495883 NC_000014.9 scf7180000172770 100.0 True relocation, scaffold gap is present, inconsistency = 17661123 102426774 102428231 497394 495937 NC_000014.9 scf7180000172770 99.93 True fake: scaffold gap size wrong estimation (local) 102413568 102425621 510811 498795 NC_000014.9 scf7180000172770 97.24 True fake: scaffold gap size wrong estimation (local) 102412845 102413386 511504 510963 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 102407079 102407659 516901 516321 NC_000014.9 scf7180000172770 99.83 True fake: scaffold gap size wrong estimation (local) 102401819 102406305 522612 517915 NC_000014.9 scf7180000172770 98.04 True fake: scaffold gap size wrong estimation (local) 102399020 102400056 525207 524171 NC_000014.9 scf7180000172770 97.97 True fake: scaffold gap size wrong estimation (local) 102398090 102399019 526281 525352 NC_000014.9 scf7180000172770 99.89 True fake: scaffold gap size wrong estimation (local) 102396365 102397662 527941 526644 NC_000014.9 scf7180000172770 99.85 True fake: scaffold gap size wrong estimation (local) 102393792 102395581 530491 528702 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 102389254 102393633 534970 530731 NC_000014.9 scf7180000172770 95.08 True fake: scaffold gap size wrong estimation (local) 102384880 102388440 539307 535663 NC_000014.9 scf7180000172770 99.46 True fake: scaffold gap size wrong estimation (local) 102381241 102382035 542595 541801 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 102377680 102379095 545911 544496 NC_000014.9 scf7180000172770 99.93 True fake: scaffold gap size wrong estimation (local) 102372860 102377543 550878 546103 NC_000014.9 scf7180000172770 98.56 True fake: scaffold gap size wrong estimation (local) 102370179 102372370 553617 551426 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 102366537 102369715 557285 554081 NC_000014.9 scf7180000172770 99.94 True fake: scaffold gap size wrong estimation (local) 102361631 102366372 562211 557470 NC_000014.9 scf7180000172770 99.92 True fake: scaffold gap size wrong estimation (local) 102359254 102361427 564554 562381 NC_000014.9 scf7180000172770 99.95 True relocation, scaffold gap is present, inconsistency = 38910050 63446830 63447787 565971 566928 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63448803 63462843 568167 581942 NC_000014.9 scf7180000172770 98.06 True fake: scaffold gap size wrong estimation (local) 63463287 63469436 582670 588664 NC_000014.9 scf7180000172770 95.62 True fake: scaffold gap size wrong estimation (local) 63469666 63480271 588819 599481 NC_000014.9 scf7180000172770 99.88 True fake: scaffold gap size wrong estimation (local) 63482374 63485368 601483 604366 NC_000014.9 scf7180000172770 95.34 True fake: scaffold gap size wrong estimation (local) 63486098 63488477 605051 607430 NC_000014.9 scf7180000172770 99.92 True fake: not a misassembly (possible transposable element) 45291610 45292185 607451 608026 NC_000014.9 scf7180000172770 100.0 True fake: not a misassembly (possible transposable element) 63488435 63501144 608027 620532 NC_000014.9 scf7180000172770 97.63 True fake: scaffold gap size wrong estimation (local) 63501398 63504279 620647 623551 NC_000014.9 scf7180000172770 99.62 True fake: scaffold gap size wrong estimation (local) 63504471 63506300 623686 625533 NC_000014.9 scf7180000172770 99.67 True fake: scaffold gap size wrong estimation (local) 63506397 63507578 625763 626944 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63507831 63509276 627086 628531 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63509292 63511885 628615 631170 NC_000014.9 scf7180000172770 98.47 True fake: scaffold gap size wrong estimation (local) 63512101 63515633 631357 634885 NC_000014.9 scf7180000172770 99.89 True fake: scaffold gap size wrong estimation (local) 63515926 63518143 635120 637337 NC_000014.9 scf7180000172770 99.82 True fake: scaffold gap size wrong estimation (local) 63518144 63518911 637678 638445 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63523756 63526025 642956 645225 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63526126 63526939 645370 646183 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63527135 63527766 646320 646951 NC_000014.9 scf7180000172770 99.84 True fake: scaffold gap size wrong estimation (local) 63529468 63530242 648816 649590 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63531868 63533299 650913 652344 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63533901 63538687 652966 657742 NC_000014.9 scf7180000172770 99.73 True fake: scaffold gap size wrong estimation (local) 63538795 63540128 657930 659263 NC_000014.9 scf7180000172770 99.85 True fake: scaffold gap size wrong estimation (local) 63540448 63545822 659686 664939 NC_000014.9 scf7180000172770 97.74 True fake: scaffold gap size wrong estimation (local) 63546317 63547032 665096 665811 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 63547162 63547772 666346 666956 NC_000014.9 scf7180000172770 99.84 True indel: indel (<= 5bp) 63547773 63548397 666962 667586 NC_000014.9 scf7180000172770 97.28 True fake: scaffold gap size wrong estimation (local) 63551060 63553749 670087 672763 NC_000014.9 scf7180000172770 99.29 True fake: scaffold gap size wrong estimation (local) 63554410 63556458 673569 675718 NC_000014.9 scf7180000172770 95.55 True relocation, scaffold gap is present, inconsistency = -28911205 34645743 34646467 676208 676932 NC_000014.9 scf7180000172770 100.0 True local misassembly 34646653 34647295 676933 677575 NC_000014.9 scf7180000172770 96.58 True fake: not a misassembly (possible transposable element) 63557013 63557895 677596 678478 NC_000014.9 scf7180000172770 100.0 True fake: not a misassembly (possible transposable element) 34648833 34649825 680634 681626 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 34650060 34651707 681759 683406 NC_000014.9 scf7180000172770 99.88 True fake: scaffold gap size wrong estimation (local) 34651942 34657209 683600 688699 NC_000014.9 scf7180000172770 96.54 True fake: scaffold gap size wrong estimation (local) 34657380 34659147 689057 690805 NC_000014.9 scf7180000172770 98.91 True fake: scaffold gap size wrong estimation (local) 34659971 34662102 691605 693772 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 34662364 34663732 693946 695297 NC_000014.9 scf7180000172770 98.69 True fake: scaffold gap size wrong estimation (local) 34664718 34674456 696203 705984 NC_000014.9 scf7180000172770 98.87 True fake: scaffold gap size wrong estimation (local) 34675317 34676211 706774 707668 NC_000014.9 scf7180000172770 97.21 True local misassembly 34676363 34677534 707669 708840 NC_000014.9 scf7180000172770 98.29 True fake: scaffold gap size wrong estimation (local) 34677801 34679108 709287 710594 NC_000014.9 scf7180000172770 99.69 True fake: scaffold gap size wrong estimation (local) 34680322 34682245 711756 713678 NC_000014.9 scf7180000172770 99.84 True fake: scaffold gap size wrong estimation (local) 34682460 34683844 713839 715223 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 34684497 34685292 715880 716675 NC_000014.9 scf7180000172770 95.73 True fake: scaffold gap size wrong estimation (local) 34685628 34686754 716966 718092 NC_000014.9 scf7180000172770 98.14 True fake: scaffold gap size wrong estimation (local) 34687417 34689808 718769 721160 NC_000014.9 scf7180000172770 99.83 True fake: scaffold gap size wrong estimation (local) 34690875 34691911 722136 723172 NC_000014.9 scf7180000172770 99.71 True fake: scaffold gap size wrong estimation (local) 34692135 34694393 723489 725737 NC_000014.9 scf7180000172770 99.38 True fake: scaffold gap size wrong estimation (local) 34697682 34698594 728874 729786 NC_000014.9 scf7180000172770 99.67 True fake: scaffold gap size wrong estimation (local) 34699489 34701401 730756 732668 NC_000014.9 scf7180000172770 99.95 True fake: scaffold gap size wrong estimation (local) 34701832 34702430 732931 733529 NC_000014.9 scf7180000172770 99.83 True fake: scaffold gap size wrong estimation (local) 34703955 34704614 735100 735759 NC_000014.9 scf7180000172770 99.7 True fake: scaffold gap size wrong estimation (local) 34704970 34705579 735843 736452 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 34706639 34707200 737775 738336 NC_000014.9 scf7180000172770 96.44 True local misassembly 34707421 34708565 738337 739481 NC_000014.9 scf7180000172770 98.25 True fake: scaffold gap size wrong estimation (local) 34708880 34716960 740000 747933 NC_000014.9 scf7180000172770 98.04 True fake: scaffold gap size wrong estimation (local) 34717181 34717957 748293 749069 NC_000014.9 scf7180000172770 99.61 True indel: indel (<= 5bp) 34717958 34718523 749071 749636 NC_000014.9 scf7180000172770 99.82 True fake: scaffold gap size wrong estimation (local) 34718910 34719426 749775 750291 NC_000014.9 scf7180000172770 99.42 True fake: scaffold gap size wrong estimation (local) 34719869 34721896 751363 753385 NC_000014.9 scf7180000172770 99.56 True fake: scaffold gap size wrong estimation (local) 34722673 34724387 754197 755911 NC_000014.9 scf7180000172770 99.94 True fake: scaffold gap size wrong estimation (local) 34725836 34726804 757071 758054 NC_000014.9 scf7180000172770 99.07 True fake: scaffold gap size wrong estimation (local) 34728384 34729423 758630 759669 NC_000014.9 scf7180000172770 100.0 True local misassembly 34727620 34728295 759690 760365 NC_000014.9 scf7180000172770 99.26 True fake: scaffold gap size wrong estimation (local) 34732209 34732883 762568 763240 NC_000014.9 scf7180000172770 99.26 True fake: scaffold gap size wrong estimation (local) 34733216 34736144 763337 766395 NC_000014.9 scf7180000172770 96.92 True relocation, scaffold gap is present, inconsistency = 14448904 49185069 49185817 767164 766416 NC_000014.9 scf7180000172770 99.73 True fake: scaffold gap size wrong estimation (local) 49182744 49183372 768965 768337 NC_000014.9 scf7180000172770 99.7 True relocation, inconsistency = 22540604 26640904 26642139 768966 770201 NC_000014.9 scf7180000172770 99.6 True fake: scaffold gap size wrong estimation (local) 26643526 26644243 771561 772277 NC_000014.9 scf7180000172770 99.44 True indel: stretch of mismatches 26644690 26666348 772724 794768 NC_000014.9 scf7180000172770 98.4 True fake: scaffold gap size wrong estimation (local) 26666582 26671914 795023 800354 NC_000014.9 scf7180000172770 99.81 True fake: scaffold gap size wrong estimation (local) 26672135 26673341 800548 801754 NC_000014.9 scf7180000172770 99.92 True fake: scaffold gap size wrong estimation (local) 26679339 26688135 809406 818196 NC_000014.9 scf7180000172770 99.77 True fake: scaffold gap size wrong estimation (local) 26689508 26693363 819411 823266 NC_000014.9 scf7180000172770 99.92 True fake: scaffold gap size wrong estimation (local) 26693554 26695861 823420 825747 NC_000014.9 scf7180000172770 99.39 True fake: scaffold gap size wrong estimation (local) 26696368 26725378 826167 855173 NC_000014.9 scf7180000172770 99.54 True fake: scaffold gap size wrong estimation (local) 26726386 26733329 856072 862990 NC_000014.9 scf7180000172770 99.31 True fake: scaffold gap size wrong estimation (local) 26733414 26752156 863342 882047 NC_000014.9 scf7180000172770 99.68 True fake: scaffold gap size wrong estimation (local) 26752372 26756499 882209 886365 NC_000014.9 scf7180000172770 99.61 True fake: scaffold gap size wrong estimation (local) 26756756 26758522 886535 888301 NC_000014.9 scf7180000172770 99.83 True indel: indel (<= 5bp) 26758652 26762548 888432 892328 NC_000014.9 scf7180000172770 100.0 True fake: scaffold gap size wrong estimation (local) 26762758 26768288 892562 898049 NC_000014.9 scf7180000172770 99.12 True fake: not a misassembly (possible transposable element) 84922191 84923789 900026 898428 NC_000014.9 scf7180000172770 99.75 True fake: not a misassembly (possible transposable element) 26768799 26772743 900027 903893 NC_000014.9 scf7180000172770 97.99 True fake: scaffold gap size wrong estimation (local) 26772958 26799020 904044 930239 NC_000014.9 scf7180000172770 99.37 True fake: scaffold gap size wrong estimation (local) 26799912 26807046 931052 938186 NC_000014.9 scf7180000172770 99.92 True fake: scaffold gap size wrong estimation (local) 26807511 26809729 938651 940869 NC_000014.9 scf7180000172770 99.73 True fake: scaffold gap size wrong estimation (local) 26809885 26828360 940972 959529 NC_000014.9 scf7180000172770 99.79 True fake: scaffold gap size wrong estimation (local) 26828478 26843365 959674 974675 NC_000014.9 scf7180000172770 99.24 True fake: scaffold gap size wrong estimation (local) 26843610 26850168 974820 981374 NC_000014.9 scf7180000172770 99.83 True fake: scaffold gap size wrong estimation (local) 26850681 26854754 981835 985909 NC_000014.9 scf7180000172770 99.9 True fake: scaffold gap size wrong estimation (local) 26854963 26864083 986037 995149 NC_000014.9 scf7180000172770 99.82 True fake: scaffold gap size wrong estimation (local) 26865336 26879739 996343 1010760 NC_000014.9 scf7180000172770 99.81 True fake: scaffold gap size wrong estimation (local) 26879887 26917460 1010844 1048169 NC_000014.9 scf7180000172770 98.99 True fake: scaffold gap size wrong estimation (local) 26917773 26942243 1048366 1073025 NC_000014.9 scf7180000172770 99.33 True indel: indel (> 5bp) 26942426 26949483 1073214 1080282 NC_000014.9 scf7180000172770 99.87 True fake: scaffold gap size wrong estimation (local) 26950855 26968630 1081511 1099111 NC_000014.9 scf7180000172770 98.78 True fake: scaffold gap size wrong estimation (local) 26968885 26969910 1099379 1100404 NC_000014.9 scf7180000172770 99.9 True fake: scaffold gap size wrong estimation (local) 26970146 26971169 1100536 1101559 NC_000014.9 scf7180000172770 99.9 True fake: scaffold gap size wrong estimation (local) 26971372 27002792 1101817 1133295 NC_000014.9 scf7180000172770 98.91 True fake: scaffold gap size wrong estimation (local) 27002921 27044181 1133665 1175755 NC_000014.9 scf7180000172770 96.25 True fake: scaffold gap size wrong estimation (local) 27048004 27052826 1179478 1184348 NC_000014.9 scf7180000172770 99.98 True fake: scaffold gap size wrong estimation (local) 27053899 27097339 1185592 1229060 NC_000014.9 scf7180000172770 99.86 True fake: scaffold gap size wrong estimation (local) 27097549 27103318 1229248 1235017 NC_000014.9 scf7180000172770 99.9 True fake: scaffold gap size wrong estimation (local) 27103756 27116605 1235355 1248716 NC_000014.9 scf7180000172770 95.17 True fake: not a misassembly (possible transposable element) 57843231 57844946 1250469 1248754 NC_000014.9 scf7180000172770 100.0 True fake: not a misassembly (possible transposable element) 27117756 27119078 1250470 1251792 NC_000014.9 scf7180000172770 99.48 True CONTIG scf7180000172770 1251792 misassembled 34947569 34948813 1244 1 NC_000014.9 scf7180000172771 99.76 True fake: scaffold gap size wrong estimation (local) 34943349 34947238 5460 1614 NC_000014.9 scf7180000172771 98.86 True fake: scaffold gap size wrong estimation (local) 34941730 34942665 7034 6099 NC_000014.9 scf7180000172771 99.89 True fake: scaffold gap size wrong estimation (local) 34940722 34941231 7998 7489 NC_000014.9 scf7180000172771 99.61 True fake: scaffold gap size wrong estimation (local) 34938782 34940705 10018 8095 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34937180 34938234 11658 10573 NC_000014.9 scf7180000172771 98.87 True fake: scaffold gap size wrong estimation (local) 34936230 34937021 12584 11793 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34934756 34935887 14129 12998 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34932507 34934362 16386 14527 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 34929008 34932089 19837 16761 NC_000014.9 scf7180000172771 99.8 True fake: scaffold gap size wrong estimation (local) 34927851 34928453 21023 20421 NC_000014.9 scf7180000172771 96.35 True fake: scaffold gap size wrong estimation (local) 34925361 34927296 23551 21616 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 34924104 34924655 24588 24037 NC_000014.9 scf7180000172771 100.0 True indel: indel (<= 5bp) 34923084 34924103 25613 24594 NC_000014.9 scf7180000172771 97.65 True fake: scaffold gap size wrong estimation (local) 34921305 34921923 26974 26356 NC_000014.9 scf7180000172771 99.84 True fake: scaffold gap size wrong estimation (local) 34920242 34921091 28308 27459 NC_000014.9 scf7180000172771 99.76 True fake: scaffold gap size wrong estimation (local) 34919476 34920059 29214 28631 NC_000014.9 scf7180000172771 96.58 True indel: indel (<= 5bp) 34918927 34919475 29764 29216 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34918401 34918926 30345 29820 NC_000014.9 scf7180000172771 96.2 True local misassembly 34917499 34918309 31156 30346 NC_000014.9 scf7180000172771 99.75 True fake: scaffold gap size wrong estimation (local) 34916273 34916984 32548 31837 NC_000014.9 scf7180000172771 100.0 True local misassembly 34914838 34915897 33608 32549 NC_000014.9 scf7180000172771 99.81 True fake: scaffold gap size wrong estimation (local) 34913994 34914694 34795 34095 NC_000014.9 scf7180000172771 97.0 True local misassembly 34912767 34913850 35879 34796 NC_000014.9 scf7180000172771 98.06 True fake: scaffold gap size wrong estimation (local) 34911258 34912385 37365 36238 NC_000014.9 scf7180000172771 99.91 True fake: scaffold gap size wrong estimation (local) 34910388 34911257 38623 37754 NC_000014.9 scf7180000172771 99.77 True fake: scaffold gap size wrong estimation (local) 34908163 34909470 40749 39442 NC_000014.9 scf7180000172771 99.69 True fake: scaffold gap size wrong estimation (local) 34905642 34908039 43250 40835 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34904660 34905542 44233 43351 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 34902113 34903685 46743 45230 NC_000014.9 scf7180000172771 95.94 True fake: scaffold gap size wrong estimation (local) 34900045 34900675 49188 48558 NC_000014.9 scf7180000172771 96.51 True relocation, scaffold gap is present, inconsistency = 65014308 99915421 99933881 49626 67746 NC_000014.9 scf7180000172771 96.45 True fake: scaffold gap size wrong estimation (local) 99933997 99935216 68323 69542 NC_000014.9 scf7180000172771 99.92 True fake: not a misassembly (possible transposable element) 102567485 102568069 71232 70648 NC_000014.9 scf7180000172771 99.83 True fake: not a misassembly (possible transposable element) 99935805 99945810 71283 81625 NC_000014.9 scf7180000172771 97.2 True fake: scaffold gap size wrong estimation (local) 99946111 99948239 81880 84006 NC_000014.9 scf7180000172771 99.3 True fake: scaffold gap size wrong estimation (local) 99949385 99950024 85535 86174 NC_000014.9 scf7180000172771 99.22 True indel: indel (<= 5bp) 99950123 99952939 86277 89080 NC_000014.9 scf7180000172771 99.29 True fake: scaffold gap size wrong estimation (local) 99954325 99956927 90842 93432 NC_000014.9 scf7180000172771 99.42 True fake: scaffold gap size wrong estimation (local) 99957478 99959028 93866 95418 NC_000014.9 scf7180000172771 99.41 True fake: scaffold gap size wrong estimation (local) 99959333 99961160 95769 97596 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 99961399 99963056 97725 99454 NC_000014.9 scf7180000172771 99.64 True fake: scaffold gap size wrong estimation (local) 99963189 99963977 99554 100342 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 99964269 99973502 100629 109982 NC_000014.9 scf7180000172771 99.0 True fake: scaffold gap size wrong estimation (local) 99973684 99975769 110364 112437 NC_000014.9 scf7180000172771 99.33 True fake: scaffold gap size wrong estimation (local) 99976239 99977407 113165 114333 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 99978404 99985652 115575 122659 NC_000014.9 scf7180000172771 96.08 True fake: scaffold gap size wrong estimation (local) 99985776 99987407 122716 124284 NC_000014.9 scf7180000172771 96.02 True fake: scaffold gap size wrong estimation (local) 99987911 99991179 124758 128026 NC_000014.9 scf7180000172771 99.42 True fake: scaffold gap size wrong estimation (local) 99991180 99993075 128752 130647 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 99993922 99998049 131464 135600 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 99998279 100000329 135877 137927 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100000455 100003425 137977 141043 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100003784 100006008 141508 143760 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100006300 100006986 144051 144747 NC_000014.9 scf7180000172771 99.11 True indel: stretch of mismatches 100007239 100010587 145000 148348 NC_000014.9 scf7180000172771 99.88 True fake: scaffold gap size wrong estimation (local) 100010661 100015879 148436 153654 NC_000014.9 scf7180000172771 99.96 True fake: scaffold gap size wrong estimation (local) 100016443 100023372 154172 161046 NC_000014.9 scf7180000172771 98.78 True fake: scaffold gap size wrong estimation (local) 100023727 100033982 161428 171876 NC_000014.9 scf7180000172771 96.93 True fake: scaffold gap size wrong estimation (local) 100034238 100039353 172117 177461 NC_000014.9 scf7180000172771 95.89 True fake: scaffold gap size wrong estimation (local) 100039491 100043606 177566 181681 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100043726 100046747 181790 184810 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100047142 100050337 185103 188298 NC_000014.9 scf7180000172771 99.94 True fake: scaffold gap size wrong estimation (local) 100050966 100054061 188875 191965 NC_000014.9 scf7180000172771 99.58 True fake: scaffold gap size wrong estimation (local) 100054250 100054947 192054 192751 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100055212 100060177 193134 198021 NC_000014.9 scf7180000172771 98.28 True fake: scaffold gap size wrong estimation (local) 100060431 100077859 198209 215592 NC_000014.9 scf7180000172771 99.19 True fake: scaffold gap size wrong estimation (local) 100078064 100085871 215750 223545 NC_000014.9 scf7180000172771 99.7 True fake: scaffold gap size wrong estimation (local) 100086074 100089886 223733 227555 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 100090176 100091370 227637 228831 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100091371 100092588 229439 230656 NC_000014.9 scf7180000172771 99.34 True indel: indel (> 5bp) 100092646 100094692 230657 232703 NC_000014.9 scf7180000172771 99.02 True fake: scaffold gap size wrong estimation (local) 100095039 100095788 233395 234144 NC_000014.9 scf7180000172771 99.87 True fake: scaffold gap size wrong estimation (local) 100095945 100099741 234222 237928 NC_000014.9 scf7180000172771 97.51 True fake: scaffold gap size wrong estimation (local) 100101148 100111154 238888 249357 NC_000014.9 scf7180000172771 96.55 True fake: scaffold gap size wrong estimation (local) 100111405 100125563 249554 263628 NC_000014.9 scf7180000172771 99.39 True fake: scaffold gap size wrong estimation (local) 100125749 100133803 263863 271917 NC_000014.9 scf7180000172771 99.98 True fake: scaffold gap size wrong estimation (local) 100133963 100154161 272027 292408 NC_000014.9 scf7180000172771 99.37 True fake: scaffold gap size wrong estimation (local) 100154357 100157863 292569 296075 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100158094 100161909 296295 300177 NC_000014.9 scf7180000172771 98.78 True fake: scaffold gap size wrong estimation (local) 100162350 100163266 300683 301599 NC_000014.9 scf7180000172771 100.0 True local misassembly 100163410 100163981 301600 302171 NC_000014.9 scf7180000172771 96.33 True fake: scaffold gap size wrong estimation (local) 100164577 100165986 303168 304577 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100168332 100170452 307909 310029 NC_000014.9 scf7180000172771 99.91 True local misassembly 100170644 100172199 310030 311585 NC_000014.9 scf7180000172771 98.59 True fake: scaffold gap size wrong estimation (local) 100172571 100173845 312006 313280 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100173995 100180001 313501 319504 NC_000014.9 scf7180000172771 99.35 True fake: scaffold gap size wrong estimation (local) 100181652 100182771 320931 322050 NC_000014.9 scf7180000172771 99.46 True local misassembly 100183039 100183638 322051 322650 NC_000014.9 scf7180000172771 99.83 True fake: scaffold gap size wrong estimation (local) 100184915 100185780 323999 324864 NC_000014.9 scf7180000172771 99.77 True local misassembly 100185986 100186683 324865 325562 NC_000014.9 scf7180000172771 96.85 True fake: scaffold gap size wrong estimation (local) 100187313 100188012 326482 327181 NC_000014.9 scf7180000172771 97.0 True local misassembly 100188227 100189563 327182 328518 NC_000014.9 scf7180000172771 99.78 True fake: scaffold gap size wrong estimation (local) 100190088 100190772 331290 331974 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100191769 100195127 332708 336066 NC_000014.9 scf7180000172771 99.91 True fake: scaffold gap size wrong estimation (local) 100196879 100197852 337854 338849 NC_000014.9 scf7180000172771 99.59 True fake: scaffold gap size wrong estimation (local) 100198754 100200186 340161 341599 NC_000014.9 scf7180000172771 98.99 True fake: scaffold gap size wrong estimation (local) 100201135 100202187 342729 343781 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100202784 100207881 344593 349494 NC_000014.9 scf7180000172771 96.1 True fake: scaffold gap size wrong estimation (local) 100207910 100208460 349978 350528 NC_000014.9 scf7180000172771 98.73 True fake: scaffold gap size wrong estimation (local) 100209053 100210297 350913 352157 NC_000014.9 scf7180000172771 97.99 True fake: scaffold gap size wrong estimation (local) 100210871 100216902 352737 358768 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100217466 100219878 359307 361685 NC_000014.9 scf7180000172771 98.45 True fake: scaffold gap size wrong estimation (local) 100220099 100220804 362000 362701 NC_000014.9 scf7180000172771 99.29 True fake: scaffold gap size wrong estimation (local) 100221077 100232139 362828 373852 NC_000014.9 scf7180000172771 99.18 True fake: scaffold gap size wrong estimation (local) 100232252 100232775 374039 374562 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100233049 100233852 374735 375564 NC_000014.9 scf7180000172771 99.26 True fake: scaffold gap size wrong estimation (local) 100234127 100235650 375886 377409 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100235780 100239005 377502 380810 NC_000014.9 scf7180000172771 99.91 True fake: scaffold gap size wrong estimation (local) 100239106 100240039 380951 381884 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100240269 100242379 382057 384197 NC_000014.9 scf7180000172771 98.96 True fake: scaffold gap size wrong estimation (local) 100242661 100244005 384657 385979 NC_000014.9 scf7180000172771 98.04 True fake: scaffold gap size wrong estimation (local) 100244350 100244955 386073 386678 NC_000014.9 scf7180000172771 99.83 True fake: scaffold gap size wrong estimation (local) 100245879 100247961 387695 389777 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 100249986 100254737 391761 396515 NC_000014.9 scf7180000172771 99.85 True fake: not a misassembly (possible transposable element) 102167429 102168563 396635 397769 NC_000014.9 scf7180000172771 99.82 True fake: not a misassembly (possible transposable element) 100255007 100259331 397824 402122 NC_000014.9 scf7180000172771 99.35 True fake: scaffold gap size wrong estimation (local) 100259507 100260273 402286 403052 NC_000014.9 scf7180000172771 99.87 True fake: scaffold gap size wrong estimation (local) 100260805 100262961 403592 405796 NC_000014.9 scf7180000172771 99.07 True fake: scaffold gap size wrong estimation (local) 100263152 100265125 405977 407979 NC_000014.9 scf7180000172771 99.55 True fake: scaffold gap size wrong estimation (local) 100265914 100267561 408695 410342 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100267797 100270134 410614 412951 NC_000014.9 scf7180000172771 99.96 True fake: scaffold gap size wrong estimation (local) 100272297 100280990 415012 423713 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 100281085 100284842 423794 427571 NC_000014.9 scf7180000172771 99.84 True indel: indel (<= 5bp) 100284960 100301001 427690 443571 NC_000014.9 scf7180000172771 98.65 True fake: scaffold gap size wrong estimation (local) 100301765 100308523 444448 450891 NC_000014.9 scf7180000172771 95.3 True fake: scaffold gap size wrong estimation (local) 100308679 100315676 451054 458148 NC_000014.9 scf7180000172771 98.73 True fake: scaffold gap size wrong estimation (local) 100315864 100316701 458289 459126 NC_000014.9 scf7180000172771 99.88 True fake: scaffold gap size wrong estimation (local) 100317169 100320923 459608 463384 NC_000014.9 scf7180000172771 99.79 True fake: scaffold gap size wrong estimation (local) 100321101 100328113 463519 470583 NC_000014.9 scf7180000172771 99.22 True fake: scaffold gap size wrong estimation (local) 100328262 100331806 470733 474277 NC_000014.9 scf7180000172771 99.83 True fake: scaffold gap size wrong estimation (local) 100331929 100335396 474400 477867 NC_000014.9 scf7180000172771 99.94 True fake: scaffold gap size wrong estimation (local) 100336308 100339028 478772 481550 NC_000014.9 scf7180000172771 99.3 True fake: scaffold gap size wrong estimation (local) 100339601 100342708 482069 485382 NC_000014.9 scf7180000172771 96.17 True fake: scaffold gap size wrong estimation (local) 100343072 100343875 485545 486351 NC_000014.9 scf7180000172771 99.87 True fake: scaffold gap size wrong estimation (local) 100343903 100344629 486580 487298 NC_000014.9 scf7180000172771 97.52 True fake: scaffold gap size wrong estimation (local) 100345688 100347643 488199 490153 NC_000014.9 scf7180000172771 99.59 True fake: scaffold gap size wrong estimation (local) 100347639 100350184 490310 492769 NC_000014.9 scf7180000172771 96.52 True fake: scaffold gap size wrong estimation (local) 100350402 100351804 492973 494353 NC_000014.9 scf7180000172771 98.32 True fake: scaffold gap size wrong estimation (local) 100352390 100353429 494932 495971 NC_000014.9 scf7180000172771 99.81 True fake: scaffold gap size wrong estimation (local) 100353516 100355251 496039 497774 NC_000014.9 scf7180000172771 99.83 True fake: scaffold gap size wrong estimation (local) 100355396 100358156 497951 500664 NC_000014.9 scf7180000172771 97.33 True fake: scaffold gap size wrong estimation (local) 100358398 100365127 500937 507764 NC_000014.9 scf7180000172771 99.69 True fake: scaffold gap size wrong estimation (local) 100365740 100369725 508498 512524 NC_000014.9 scf7180000172771 99.62 True fake: scaffold gap size wrong estimation (local) 100369812 100371205 512583 514016 NC_000014.9 scf7180000172771 97.42 True fake: scaffold gap size wrong estimation (local) 100371616 100378182 514436 521020 NC_000014.9 scf7180000172771 99.54 True fake: scaffold gap size wrong estimation (local) 100379003 100379833 521535 522342 NC_000014.9 scf7180000172771 97.16 True fake: scaffold gap size wrong estimation (local) 100380765 100386636 523066 528937 NC_000014.9 scf7180000172771 99.91 True fake: scaffold gap size wrong estimation (local) 100386811 100395993 529044 538221 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100396217 100397937 538355 540075 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100398105 100405235 540194 547326 NC_000014.9 scf7180000172771 99.96 True fake: scaffold gap size wrong estimation (local) 100405426 100411714 547469 553831 NC_000014.9 scf7180000172771 99.1 True fake: scaffold gap size wrong estimation (local) 100414896 100431573 556827 573624 NC_000014.9 scf7180000172771 99.27 True fake: scaffold gap size wrong estimation (local) 100431982 100446350 574006 588368 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100446578 100447938 588539 589899 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100448195 100459896 590111 601844 NC_000014.9 scf7180000172771 99.95 True fake: scaffold gap size wrong estimation (local) 100460369 100477865 602258 619679 NC_000014.9 scf7180000172771 99.46 True fake: scaffold gap size wrong estimation (local) 100478100 100507179 619839 648785 NC_000014.9 scf7180000172771 99.48 True fake: scaffold gap size wrong estimation (local) 100507425 100510061 648976 651612 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100510779 100512650 652290 654161 NC_000014.9 scf7180000172771 99.89 True fake: scaffold gap size wrong estimation (local) 100512651 100513801 654564 655714 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100514188 100517032 655843 658616 NC_000014.9 scf7180000172771 97.24 True fake: scaffold gap size wrong estimation (local) 100517748 100519766 659335 661353 NC_000014.9 scf7180000172771 99.8 True fake: scaffold gap size wrong estimation (local) 100519884 100526942 661449 668389 NC_000014.9 scf7180000172771 98.27 True fake: scaffold gap size wrong estimation (local) 100528454 100580047 670376 721540 NC_000014.9 scf7180000172771 99.05 True fake: scaffold gap size wrong estimation (local) 100580246 100582269 722586 724609 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100583539 100585391 725683 727604 NC_000014.9 scf7180000172771 99.24 True fake: scaffold gap size wrong estimation (local) 100585448 100587175 727725 729452 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100587506 100588959 729751 731204 NC_000014.9 scf7180000172771 99.93 True indel: indel (<= 5bp) 100588961 100595409 731205 737653 NC_000014.9 scf7180000172771 99.95 True indel: indel (<= 5bp) 100595412 100595999 737654 738241 NC_000014.9 scf7180000172771 99.83 True fake: scaffold gap size wrong estimation (local) 100596271 100597014 738678 739421 NC_000014.9 scf7180000172771 99.87 True fake: scaffold gap size wrong estimation (local) 100597015 100597973 740540 741498 NC_000014.9 scf7180000172771 99.9 True indel: indel (> 5bp) 100597990 100600540 741499 744049 NC_000014.9 scf7180000172771 99.1 True indel: indel (> 5bp) 100600592 100601639 744050 745097 NC_000014.9 scf7180000172771 97.52 True indel: indel (> 5bp) 100601640 100611431 745105 754896 NC_000014.9 scf7180000172771 99.77 True fake: scaffold gap size wrong estimation (local) 100611716 100612660 755117 756061 NC_000014.9 scf7180000172771 99.89 True fake: scaffold gap size wrong estimation (local) 100612857 100631806 756312 775594 NC_000014.9 scf7180000172771 97.35 True fake: scaffold gap size wrong estimation (local) 100632500 100642718 776132 786266 NC_000014.9 scf7180000172771 99.18 True fake: scaffold gap size wrong estimation (local) 100642806 100644269 786481 787944 NC_000014.9 scf7180000172771 99.8 True local misassembly 100644386 100646397 787945 789956 NC_000014.9 scf7180000172771 98.86 True local misassembly 100646536 100647241 789957 790662 NC_000014.9 scf7180000172771 97.17 True fake: scaffold gap size wrong estimation (local) 100646975 100647939 791258 792222 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100648231 100662333 792257 806608 NC_000014.9 scf7180000172771 98.36 True fake: scaffold gap size wrong estimation (local) 100662541 100664700 806763 808922 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100664754 100676947 808992 821186 NC_000014.9 scf7180000172771 99.82 True fake: scaffold gap size wrong estimation (local) 100677115 100683353 821286 827525 NC_000014.9 scf7180000172771 99.86 True fake: scaffold gap size wrong estimation (local) 100683539 100685608 827753 829831 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100686750 100689627 831525 834318 NC_000014.9 scf7180000172771 96.98 True fake: scaffold gap size wrong estimation (local) 100689863 100699604 834505 844246 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100699871 100704996 844524 849649 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100706027 100707536 850569 852078 NC_000014.9 scf7180000172771 99.74 True fake: scaffold gap size wrong estimation (local) 100707638 100740066 852250 884826 NC_000014.9 scf7180000172771 99.45 True fake: scaffold gap size wrong estimation (local) 100740384 100746628 885160 891275 NC_000014.9 scf7180000172771 96.1 True fake: scaffold gap size wrong estimation (local) 100747164 100749485 891828 894167 NC_000014.9 scf7180000172771 99.22 True fake: scaffold gap size wrong estimation (local) 100749682 100752260 894387 896991 NC_000014.9 scf7180000172771 99.5 True fake: scaffold gap size wrong estimation (local) 100752523 100756911 897326 901714 NC_000014.9 scf7180000172771 99.91 True fake: scaffold gap size wrong estimation (local) 100757732 100760853 902582 905725 NC_000014.9 scf7180000172771 99.81 True fake: scaffold gap size wrong estimation (local) 100761119 100781471 905910 926262 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100781610 100793445 926371 938206 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100794213 100795906 938609 940302 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 100796821 100797573 941285 942037 NC_000014.9 scf7180000172771 99.87 True fake: scaffold gap size wrong estimation (local) 100798322 100800406 942651 944735 NC_000014.9 scf7180000172771 99.81 True fake: scaffold gap size wrong estimation (local) 100801079 100806873 945349 951093 NC_000014.9 scf7180000172771 99.03 True fake: scaffold gap size wrong estimation (local) 100806915 100810206 951291 954462 NC_000014.9 scf7180000172771 96.24 True fake: scaffold gap size wrong estimation (local) 100810406 100812580 954651 956825 NC_000014.9 scf7180000172771 99.82 True fake: scaffold gap size wrong estimation (local) 100812688 100818829 956941 963082 NC_000014.9 scf7180000172771 99.93 True fake: scaffold gap size wrong estimation (local) 100819199 100833309 963356 977468 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 100833531 100850344 977680 994484 NC_000014.9 scf7180000172771 99.9 True fake: scaffold gap size wrong estimation (local) 100850361 100870249 994540 1014385 NC_000014.9 scf7180000172771 99.67 True local misassembly 100871292 100873468 1014386 1016562 NC_000014.9 scf7180000172771 99.97 True fake: scaffold gap size wrong estimation (local) 100873456 100931593 1018006 1076994 NC_000014.9 scf7180000172771 98.37 True fake: scaffold gap size wrong estimation (local) 100931625 100960012 1077107 1105360 NC_000014.9 scf7180000172771 99.18 True fake: scaffold gap size wrong estimation (local) 100960171 100970350 1105447 1115590 NC_000014.9 scf7180000172771 99.4 True fake: scaffold gap size wrong estimation (local) 100970594 100985080 1115705 1130196 NC_000014.9 scf7180000172771 99.81 True fake: scaffold gap size wrong estimation (local) 100985293 100992271 1130304 1137127 NC_000014.9 scf7180000172771 97.61 True fake: scaffold gap size wrong estimation (local) 100992395 101006778 1137803 1152087 NC_000014.9 scf7180000172771 99.23 True fake: scaffold gap size wrong estimation (local) 101007041 101014381 1152316 1159650 NC_000014.9 scf7180000172771 99.85 True fake: scaffold gap size wrong estimation (local) 101014614 101019590 1159845 1164821 NC_000014.9 scf7180000172771 100.0 True local misassembly 101019799 101034473 1164822 1179893 NC_000014.9 scf7180000172771 97.43 True fake: scaffold gap size wrong estimation (local) 101034632 101036747 1180042 1182157 NC_000014.9 scf7180000172771 98.3 True fake: scaffold gap size wrong estimation (local) 101036748 101038280 1182224 1183756 NC_000014.9 scf7180000172771 99.54 True local misassembly 101038639 101040060 1183817 1185238 NC_000014.9 scf7180000172771 100.0 True local misassembly 101040768 101041832 1185946 1187010 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 101041876 101085621 1187942 1231847 NC_000014.9 scf7180000172771 99.61 True fake: scaffold gap size wrong estimation (local) 101085824 101102238 1231977 1248392 NC_000014.9 scf7180000172771 99.19 True fake: scaffold gap size wrong estimation (local) 101102476 101138325 1248596 1284021 NC_000014.9 scf7180000172771 98.13 True fake: scaffold gap size wrong estimation (local) 101138529 101142771 1284175 1288411 NC_000014.9 scf7180000172771 99.79 True fake: scaffold gap size wrong estimation (local) 101145197 101156930 1290914 1302646 NC_000014.9 scf7180000172771 99.91 True fake: not a misassembly (possible transposable element) 37882817 37883341 1302667 1303191 NC_000014.9 scf7180000172771 100.0 True fake: not a misassembly (possible transposable element) 101157083 101158348 1303392 1304657 NC_000014.9 scf7180000172771 100.0 True relocation, inconsistency = -63273769 37884580 37885511 1304658 1305590 NC_000014.9 scf7180000172771 99.8 True relocation, inconsistency = 30756759 68642271 68643330 1305591 1306650 NC_000014.9 scf7180000172771 100.0 True relocation, inconsistency = 33057255 35583902 35585015 1307764 1306651 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 35579608 35583901 1312632 1308339 NC_000014.9 scf7180000172771 99.88 True fake: scaffold gap size wrong estimation (local) 35575868 35579374 1316322 1312816 NC_000014.9 scf7180000172771 100.0 True fake: scaffold gap size wrong estimation (local) 35563038 35575665 1329176 1316419 NC_000014.9 scf7180000172771 99.46 True fake: scaffold gap size wrong estimation (local) 35561526 35562767 1330711 1329470 NC_000014.9 scf7180000172771 99.92 True fake: scaffold gap size wrong estimation (local) 35554623 35560978 1337497 1331148 NC_000014.9 scf7180000172771 99.89 True fake: scaffold gap size wrong estimation (local) 35544993 35554351 1347084 1337742 NC_000014.9 scf7180000172771 99.82 True CONTIG scf7180000172771 1347084 misassembled 92756991 92762590 529 6128 NC_000014.9 scf7180000172772 99.96 True fake: scaffold gap size wrong estimation (local) 92763127 92763991 6766 7630 NC_000014.9 scf7180000172772 99.65 True relocation, scaffold gap is present, inconsistency = 790463 93554505 93555267 8443 7681 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 93551311 93552689 11517 10139 NC_000014.9 scf7180000172772 99.93 True fake: scaffold gap size wrong estimation (local) 93550534 93551039 12110 11605 NC_000014.9 scf7180000172772 99.41 True fake: scaffold gap size wrong estimation (local) 93543541 93550346 19309 12505 NC_000014.9 scf7180000172772 99.88 True fake: scaffold gap size wrong estimation (local) 93542020 93543390 20757 19386 NC_000014.9 scf7180000172772 99.78 True fake: scaffold gap size wrong estimation (local) 93539503 93541811 23307 20999 NC_000014.9 scf7180000172772 99.7 True fake: scaffold gap size wrong estimation (local) 93530880 93538805 31932 23987 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 93516669 93530588 46115 32195 NC_000014.9 scf7180000172772 99.89 True fake: scaffold gap size wrong estimation (local) 93501657 93516461 61161 46347 NC_000014.9 scf7180000172772 98.09 True fake: scaffold gap size wrong estimation (local) 93498420 93501342 64384 61462 NC_000014.9 scf7180000172772 99.97 True fake: scaffold gap size wrong estimation (local) 93494113 93498151 68686 64656 NC_000014.9 scf7180000172772 99.7 True fake: scaffold gap size wrong estimation (local) 93492625 93493839 70148 68934 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93486676 93492449 76066 70290 NC_000014.9 scf7180000172772 99.74 True fake: scaffold gap size wrong estimation (local) 93484184 93486488 78566 76262 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93479567 93483728 83321 79160 NC_000014.9 scf7180000172772 99.93 True fake: scaffold gap size wrong estimation (local) 93464244 93479424 98639 83416 NC_000014.9 scf7180000172772 99.85 True fake: scaffold gap size wrong estimation (local) 93462174 93463940 100664 98898 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93460217 93461977 102594 100882 NC_000014.9 scf7180000172772 96.55 True fake: scaffold gap size wrong estimation (local) 93434237 93459676 128629 103245 NC_000014.9 scf7180000172772 99.09 True fake: scaffold gap size wrong estimation (local) 93420212 93433958 142698 128991 NC_000014.9 scf7180000172772 99.55 True fake: scaffold gap size wrong estimation (local) 93394392 93413094 170097 151307 NC_000014.9 scf7180000172772 99.11 True indel: indel (> 5bp) 93389922 93394351 174527 170098 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93385625 93389695 178835 174711 NC_000014.9 scf7180000172772 99.41 True fake: scaffold gap size wrong estimation (local) 93377374 93385406 186972 178938 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93375958 93377113 188314 187159 NC_000014.9 scf7180000172772 99.91 True indel: indel (<= 5bp) 93371684 93375957 192589 188316 NC_000014.9 scf7180000172772 97.68 True fake: scaffold gap size wrong estimation (local) 93366588 93370565 197456 193609 NC_000014.9 scf7180000172772 96.66 True fake: scaffold gap size wrong estimation (local) 93365388 93366586 198762 197564 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93363933 93365138 200568 199016 NC_000014.9 scf7180000172772 98.77 True fake: scaffold gap size wrong estimation (local) 93361512 93363751 202953 200714 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93359768 93360987 204975 203756 NC_000014.9 scf7180000172772 97.7 True local misassembly 93357927 93359314 206363 204976 NC_000014.9 scf7180000172772 99.5 True fake: scaffold gap size wrong estimation (local) 93356178 93357455 208129 206852 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93342502 93355130 221920 209170 NC_000014.9 scf7180000172772 99.14 True indel: indel (> 5bp) 93340586 93342273 223894 222132 NC_000014.9 scf7180000172772 99.64 True fake: scaffold gap size wrong estimation (local) 93339574 93340273 224713 224014 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93336605 93339336 227681 224950 NC_000014.9 scf7180000172772 99.96 True fake: scaffold gap size wrong estimation (local) 93321526 93336432 242770 227829 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 93316186 93321389 248005 242847 NC_000014.9 scf7180000172772 99.09 True fake: scaffold gap size wrong estimation (local) 93308282 93315967 255954 248230 NC_000014.9 scf7180000172772 99.82 True fake: scaffold gap size wrong estimation (local) 93301301 93308051 262680 256076 NC_000014.9 scf7180000172772 97.5 True fake: scaffold gap size wrong estimation (local) 93291045 93300296 272793 263536 NC_000014.9 scf7180000172772 99.07 True fake: scaffold gap size wrong estimation (local) 93287213 93290094 276539 273650 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93283646 93287015 280075 276704 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93282510 93283236 280902 280176 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93278369 93282399 285390 281333 NC_000014.9 scf7180000172772 99.8 True fake: scaffold gap size wrong estimation (local) 93277148 93278200 286639 285587 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 93270373 93276906 293317 286781 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93268982 93270249 294693 293426 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93265101 93268763 298505 294849 NC_000014.9 scf7180000172772 99.62 True fake: scaffold gap size wrong estimation (local) 93260982 93264991 302565 298642 NC_000014.9 scf7180000172772 97.79 True fake: scaffold gap size wrong estimation (local) 93258833 93260732 304752 302781 NC_000014.9 scf7180000172772 99.57 True fake: scaffold gap size wrong estimation (local) 93255766 93258633 307696 304949 NC_000014.9 scf7180000172772 95.61 True fake: scaffold gap size wrong estimation (local) 93244623 93255291 319081 308442 NC_000014.9 scf7180000172772 95.33 True fake: scaffold gap size wrong estimation (local) 93229567 93244475 334016 319247 NC_000014.9 scf7180000172772 98.98 True fake: scaffold gap size wrong estimation (local) 93226797 93229332 336764 334229 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93225465 93226536 338101 337030 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93223393 93224372 340004 339025 NC_000014.9 scf7180000172772 97.86 True fake: not a misassembly (possible transposable element) 23189659 23191309 342112 340462 NC_000014.9 scf7180000172772 99.88 True fake: not a misassembly (possible transposable element) 93221916 93222512 342743 342147 NC_000014.9 scf7180000172772 96.65 True local misassembly 93219851 93221123 344016 342744 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93218335 93218927 345860 345268 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 93217274 93217842 346544 345976 NC_000014.9 scf7180000172772 99.82 True fake: scaffold gap size wrong estimation (local) 93215679 93216877 348485 347287 NC_000014.9 scf7180000172772 98.25 True local misassembly 93214157 93215485 349814 348486 NC_000014.9 scf7180000172772 99.85 True fake: scaffold gap size wrong estimation (local) 93211510 93213385 352442 350567 NC_000014.9 scf7180000172772 99.95 True fake: scaffold gap size wrong estimation (local) 93210332 93211051 353741 353022 NC_000014.9 scf7180000172772 97.22 True local misassembly 93209087 93210101 354756 353742 NC_000014.9 scf7180000172772 99.8 True fake: scaffold gap size wrong estimation (local) 93206214 93208889 357786 355104 NC_000014.9 scf7180000172772 99.96 True indel: indel (<= 5bp) 93205481 93206133 358515 357863 NC_000014.9 scf7180000172772 96.63 True indel: indel (> 5bp) 93204470 93205443 359489 358516 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93202550 93204017 361474 360007 NC_000014.9 scf7180000172772 98.64 True fake: scaffold gap size wrong estimation (local) 93200582 93201790 363477 362139 NC_000014.9 scf7180000172772 99.15 True fake: scaffold gap size wrong estimation (local) 93199156 93199924 364542 363775 NC_000014.9 scf7180000172772 99.74 True fake: scaffold gap size wrong estimation (local) 93197330 93198123 366389 365596 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93196633 93197235 367094 366492 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93194150 93196509 369757 367386 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 93193243 93193965 370806 370084 NC_000014.9 scf7180000172772 99.86 True fake: scaffold gap size wrong estimation (local) 93191501 93192774 372471 371198 NC_000014.9 scf7180000172772 99.84 True local misassembly 93190671 93191384 373185 372472 NC_000014.9 scf7180000172772 96.22 True fake: scaffold gap size wrong estimation (local) 93187852 93190386 376502 374078 NC_000014.9 scf7180000172772 95.39 True fake: not a misassembly (possible transposable element) 105554599 105555148 377496 376948 NC_000014.9 scf7180000172772 97.92 True fake: not a misassembly (possible transposable element) 93181442 93187943 383839 377497 NC_000014.9 scf7180000172772 97.49 True fake: scaffold gap size wrong estimation (local) 93179257 93180514 386519 385172 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93177844 93179104 387946 386657 NC_000014.9 scf7180000172772 99.13 True fake: scaffold gap size wrong estimation (local) 93176397 93176957 389410 388850 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93174868 93176231 390932 389569 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93173493 93174674 392359 391178 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93172105 93173285 393641 392462 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 93171309 93171894 394313 393728 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93168142 93170486 397490 394891 NC_000014.9 scf7180000172772 99.74 True fake: scaffold gap size wrong estimation (local) 93166945 93167633 398203 397511 NC_000014.9 scf7180000172772 99.28 True fake: scaffold gap size wrong estimation (local) 93163295 93164125 401813 400983 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93160099 93162269 405031 402862 NC_000014.9 scf7180000172772 99.95 True fake: scaffold gap size wrong estimation (local) 93154713 93157703 410128 407148 NC_000014.9 scf7180000172772 99.16 True fake: scaffold gap size wrong estimation (local) 93152695 93153588 412154 411261 NC_000014.9 scf7180000172772 97.65 True indel: indel (> 5bp) 93152105 93152660 412710 412155 NC_000014.9 scf7180000172772 99.82 True fake: scaffold gap size wrong estimation (local) 93150059 93151585 415023 413497 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 93148619 93150058 418278 416839 NC_000014.9 scf7180000172772 95.28 True local misassembly 93147531 93148430 419178 418279 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93145755 93146569 420867 420051 NC_000014.9 scf7180000172772 99.51 True fake: scaffold gap size wrong estimation (local) 93144198 93145519 422445 421124 NC_000014.9 scf7180000172772 99.24 True fake: scaffold gap size wrong estimation (local) 93140791 93141747 425410 424454 NC_000014.9 scf7180000172772 99.48 True fake: scaffold gap size wrong estimation (local) 93139109 93139722 427007 426402 NC_000014.9 scf7180000172772 98.21 True fake: scaffold gap size wrong estimation (local) 93136669 93138898 429467 427277 NC_000014.9 scf7180000172772 97.6 True fake: scaffold gap size wrong estimation (local) 93134372 93136381 431928 429831 NC_000014.9 scf7180000172772 97.38 True fake: scaffold gap size wrong estimation (local) 93132388 93133279 433872 432981 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93131398 93132092 435005 434311 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93127639 93130391 438505 435837 NC_000014.9 scf7180000172772 96.63 True fake: scaffold gap size wrong estimation (local) 93124928 93126458 441152 439662 NC_000014.9 scf7180000172772 96.89 True fake: scaffold gap size wrong estimation (local) 93122437 93124712 443838 441512 NC_000014.9 scf7180000172772 99.73 True fake: scaffold gap size wrong estimation (local) 93120259 93121908 445935 444286 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93119061 93120174 447168 446055 NC_000014.9 scf7180000172772 99.82 True fake: scaffold gap size wrong estimation (local) 93117761 93118852 448392 447292 NC_000014.9 scf7180000172772 97.87 True fake: scaffold gap size wrong estimation (local) 93115924 93117582 450309 448652 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93112643 93115771 453537 450409 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93111718 93112441 454487 453764 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 93108950 93111536 457162 454576 NC_000014.9 scf7180000172772 100.0 True fake: not a misassembly (possible transposable element) 18648860 18649456 457847 457254 NC_000014.9 scf7180000172772 98.83 True fake: not a misassembly (possible transposable element) 93107143 93108863 459615 457895 NC_000014.9 scf7180000172772 98.72 True local misassembly 93105948 93107010 460678 459616 NC_000014.9 scf7180000172772 97.65 True fake: scaffold gap size wrong estimation (local) 93104279 93105538 462399 461140 NC_000014.9 scf7180000172772 99.92 True fake: not a misassembly (possible transposable element) 18644503 18646690 464785 462608 NC_000014.9 scf7180000172772 98.08 True fake: not a misassembly (possible transposable element) 93103324 93104324 465806 464806 NC_000014.9 scf7180000172772 99.5 True fake: scaffold gap size wrong estimation (local) 93098386 93102525 470821 466515 NC_000014.9 scf7180000172772 96.55 True fake: scaffold gap size wrong estimation (local) 93095662 93097917 477260 475005 NC_000014.9 scf7180000172772 99.82 True local misassembly 93088357 93095661 484685 477381 NC_000014.9 scf7180000172772 99.79 True fake: scaffold gap size wrong estimation (local) 93081335 93088356 491726 484705 NC_000014.9 scf7180000172772 99.9 True fake: scaffold gap size wrong estimation (local) 93077586 93080789 495434 492231 NC_000014.9 scf7180000172772 99.97 True fake: scaffold gap size wrong estimation (local) 93072233 93077417 500708 495583 NC_000014.9 scf7180000172772 98.77 True fake: scaffold gap size wrong estimation (local) 93066673 93072048 506178 500804 NC_000014.9 scf7180000172772 99.96 True fake: scaffold gap size wrong estimation (local) 93064264 93066417 508597 506444 NC_000014.9 scf7180000172772 99.95 True fake: scaffold gap size wrong estimation (local) 93059868 93064033 513028 508863 NC_000014.9 scf7180000172772 99.95 True fake: scaffold gap size wrong estimation (local) 93053136 93058716 519796 514272 NC_000014.9 scf7180000172772 98.91 True fake: scaffold gap size wrong estimation (local) 93038746 93053006 534531 519888 NC_000014.9 scf7180000172772 97.29 True fake: scaffold gap size wrong estimation (local) 93032351 93038572 540885 534664 NC_000014.9 scf7180000172772 99.95 True fake: scaffold gap size wrong estimation (local) 93022788 93032294 550451 540929 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 93001167 93021364 572180 551744 NC_000014.9 scf7180000172772 98.81 True fake: scaffold gap size wrong estimation (local) 92980871 93000739 592254 572387 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 92978755 92980752 594356 592359 NC_000014.9 scf7180000172772 99.75 True fake: scaffold gap size wrong estimation (local) 92976124 92978024 596829 594929 NC_000014.9 scf7180000172772 100.0 True local misassembly 92977927 92978844 597797 596880 NC_000014.9 scf7180000172772 99.67 True fake: scaffold gap size wrong estimation (local) 92972793 92977540 602748 598001 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 92970900 92972746 604864 603018 NC_000014.9 scf7180000172772 99.78 True fake: scaffold gap size wrong estimation (local) 92954142 92970687 621536 605004 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 92938144 92953974 637553 621697 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 92921599 92938081 654100 637618 NC_000014.9 scf7180000172772 99.89 True fake: scaffold gap size wrong estimation (local) 92920658 92921437 655368 654589 NC_000014.9 scf7180000172772 96.28 True fake: scaffold gap size wrong estimation (local) 92918201 92920657 658466 656010 NC_000014.9 scf7180000172772 99.92 True indel: indel (<= 5bp) 92914148 92918199 662518 658467 NC_000014.9 scf7180000172772 99.95 True indel: indel (<= 5bp) 92912587 92914146 664078 662519 NC_000014.9 scf7180000172772 99.94 True fake: not a misassembly (possible transposable element) 63842670 63845172 666669 664167 NC_000014.9 scf7180000172772 99.84 True fake: not a misassembly (possible transposable element) 92909268 92910297 667780 666751 NC_000014.9 scf7180000172772 99.9 True fake: not a misassembly (possible transposable element) 63840929 63841846 669314 668397 NC_000014.9 scf7180000172772 99.78 True fake: not a misassembly (possible transposable element) 92902080 92908024 675759 669721 NC_000014.9 scf7180000172772 98.32 True fake: scaffold gap size wrong estimation (local) 92897816 92901875 679958 675872 NC_000014.9 scf7180000172772 99.63 True fake: scaffold gap size wrong estimation (local) 92882652 92897671 695031 680044 NC_000014.9 scf7180000172772 99.72 True fake: scaffold gap size wrong estimation (local) 92877530 92882427 700043 695195 NC_000014.9 scf7180000172772 98.89 True fake: scaffold gap size wrong estimation (local) 92872989 92877411 704530 700114 NC_000014.9 scf7180000172772 99.52 True fake: scaffold gap size wrong estimation (local) 92864989 92868818 709663 705838 NC_000014.9 scf7180000172772 99.71 True fake: scaffold gap size wrong estimation (local) 92859256 92864769 715199 709821 NC_000014.9 scf7180000172772 97.44 True relocation, scaffold gap is present, inconsistency = 33474307 59384060 59384868 715280 716088 NC_000014.9 scf7180000172772 99.88 True fake: not a misassembly (possible transposable element) 71837146 71838250 716161 717265 NC_000014.9 scf7180000172772 99.91 True fake: not a misassembly (possible transposable element) 59386408 59387600 718008 719200 NC_000014.9 scf7180000172772 99.92 True relocation, inconsistency = 12452265 71839866 71842585 719201 721917 NC_000014.9 scf7180000172772 99.67 True relocation, scaffold gap is present, inconsistency = 21005478 92851103 92852588 726442 724957 NC_000014.9 scf7180000172772 99.73 True fake: scaffold gap size wrong estimation (local) 92834420 92850893 743516 726848 NC_000014.9 scf7180000172772 98.49 True fake: scaffold gap size wrong estimation (local) 92829589 92834195 748350 743696 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 92826593 92828695 751288 749129 NC_000014.9 scf7180000172772 98.18 True fake: not a misassembly (possible transposable element) 59990096 59990672 751334 751910 NC_000014.9 scf7180000172772 99.48 True fake: not a misassembly (possible transposable element) 92820365 92826457 758067 751962 NC_000014.9 scf7180000172772 99.14 True fake: scaffold gap size wrong estimation (local) 92816992 92820015 761513 758431 NC_000014.9 scf7180000172772 99.31 True fake: scaffold gap size wrong estimation (local) 92808676 92815663 769683 762650 NC_000014.9 scf7180000172772 99.64 True fake: scaffold gap size wrong estimation (local) 92806536 92807982 771990 770286 NC_000014.9 scf7180000172772 99.79 True fake: scaffold gap size wrong estimation (local) 92799882 92804665 778305 773522 NC_000014.9 scf7180000172772 99.92 True fake: scaffold gap size wrong estimation (local) 92796982 92799287 781177 778872 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 92783358 92796731 794847 781468 NC_000014.9 scf7180000172772 99.61 True fake: scaffold gap size wrong estimation (local) 92781962 92783213 796279 795028 NC_000014.9 scf7180000172772 98.4 True local misassembly 92780286 92781803 797797 796280 NC_000014.9 scf7180000172772 100.0 True relocation, scaffold gap is present, inconsistency = 16941 92762206 92763324 797818 798936 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92763842 92767379 799483 802934 NC_000014.9 scf7180000172772 95.57 True fake: scaffold gap size wrong estimation (local) 92767893 92768447 803740 804294 NC_000014.9 scf7180000172772 100.0 True inversion, scaffold gap is present 92774724 92775269 805462 804917 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92772236 92774448 808185 805973 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 92770037 92771792 810569 808797 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92754148 92756202 829087 827033 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92750947 92753459 832219 829771 NC_000014.9 scf7180000172772 97.31 True fake: scaffold gap size wrong estimation (local) 92747348 92750874 835970 832425 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 92745962 92746844 837294 836412 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92744814 92745938 838547 837423 NC_000014.9 scf7180000172772 99.91 True fake: scaffold gap size wrong estimation (local) 92741778 92743026 841522 840274 NC_000014.9 scf7180000172772 98.24 True fake: scaffold gap size wrong estimation (local) 92740207 92740997 843408 842618 NC_000014.9 scf7180000172772 97.47 True local misassembly 92739020 92740052 844441 843409 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92730828 92738369 852682 845112 NC_000014.9 scf7180000172772 97.48 True fake: scaffold gap size wrong estimation (local) 92729455 92730695 854206 852966 NC_000014.9 scf7180000172772 97.99 True local misassembly 92727439 92729135 855903 854207 NC_000014.9 scf7180000172772 99.71 True fake: scaffold gap size wrong estimation (local) 92726244 92727274 857337 856307 NC_000014.9 scf7180000172772 99.9 True fake: scaffold gap size wrong estimation (local) 92723264 92725652 860092 857776 NC_000014.9 scf7180000172772 96.85 True fake: scaffold gap size wrong estimation (local) 92721011 92722438 862558 861131 NC_000014.9 scf7180000172772 99.93 True local misassembly 92722556 92723094 863147 862609 NC_000014.9 scf7180000172772 96.29 True local misassembly 92721451 92722317 864014 863148 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92719368 92720419 866167 865116 NC_000014.9 scf7180000172772 99.9 True local misassembly 92718554 92719127 866741 866168 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92708155 92718377 877119 867073 NC_000014.9 scf7180000172772 96.3 True fake: scaffold gap size wrong estimation (local) 92705715 92707933 879672 877454 NC_000014.9 scf7180000172772 99.82 True fake: scaffold gap size wrong estimation (local) 92703464 92705318 881977 880123 NC_000014.9 scf7180000172772 98.81 True local misassembly 92702376 92703056 882834 882154 NC_000014.9 scf7180000172772 100.0 True indel: indel (> 5bp) 92701506 92702263 883695 882938 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92700106 92701464 885964 884606 NC_000014.9 scf7180000172772 99.85 True fake: scaffold gap size wrong estimation (local) 92697038 92698916 889081 887203 NC_000014.9 scf7180000172772 97.29 True fake: scaffold gap size wrong estimation (local) 92691656 92696355 894525 889829 NC_000014.9 scf7180000172772 99.85 True fake: scaffold gap size wrong estimation (local) 92674892 92691494 911492 894637 NC_000014.9 scf7180000172772 98.58 True fake: scaffold gap size wrong estimation (local) 92667507 92674677 918880 911665 NC_000014.9 scf7180000172772 99.51 True fake: scaffold gap size wrong estimation (local) 92665605 92667297 920719 919027 NC_000014.9 scf7180000172772 99.94 True fake: scaffold gap size wrong estimation (local) 92664629 92665383 921739 920985 NC_000014.9 scf7180000172772 99.87 True fake: scaffold gap size wrong estimation (local) 92663021 92664363 923209 921867 NC_000014.9 scf7180000172772 99.85 True fake: scaffold gap size wrong estimation (local) 92661759 92662923 924739 923575 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92657205 92661506 929226 924924 NC_000014.9 scf7180000172772 99.81 True indel: indel (<= 5bp) 92655102 92657120 931354 929310 NC_000014.9 scf7180000172772 99.41 True fake: scaffold gap size wrong estimation (local) 92654336 92654962 932172 931546 NC_000014.9 scf7180000172772 99.68 True fake: scaffold gap size wrong estimation (local) 92643914 92653472 942502 932998 NC_000014.9 scf7180000172772 99.33 True fake: scaffold gap size wrong estimation (local) 92643322 92643826 943088 942584 NC_000014.9 scf7180000172772 100.0 True fake: scaffold gap size wrong estimation (local) 92640784 92643088 945614 943310 NC_000014.9 scf7180000172772 99.78 True local misassembly 92636907 92639899 948876 945884 NC_000014.9 scf7180000172772 99.7 True fake: scaffold gap size wrong estimation (local) 92635811 92636394 949938 949355 NC_000014.9 scf7180000172772 99.83 True fake: scaffold gap size wrong estimation (local) 92634196 92635651 951506 950089 NC_000014.9 scf7180000172772 96.94 True fake: scaffold gap size wrong estimation (local) 92622289 92634066 963459 951717 NC_000014.9 scf7180000172772 99.34 True fake: scaffold gap size wrong estimation (local) 92619624 92621184 966123 964563 NC_000014.9 scf7180000172772 99.81 True fake: scaffold gap size wrong estimation (local) 92617174 92618520 968547 967201 NC_000014.9 scf7180000172772 99.63 True CONTIG scf7180000172772 968547 misassembled 78374777 78389065 2 14300 NC_000014.9 scf7180000172773 99.73 True fake: scaffold gap size wrong estimation (local) 78389208 78397694 14429 22916 NC_000014.9 scf7180000172773 99.91 True fake: scaffold gap size wrong estimation (local) 78398223 78400995 23396 26168 NC_000014.9 scf7180000172773 99.82 True fake: scaffold gap size wrong estimation (local) 78401389 78417923 26518 43063 NC_000014.9 scf7180000172773 99.85 True fake: scaffold gap size wrong estimation (local) 78419411 78421089 44378 46073 NC_000014.9 scf7180000172773 98.88 True fake: scaffold gap size wrong estimation (local) 78421265 78444670 46220 69468 NC_000014.9 scf7180000172773 99.1 True fake: scaffold gap size wrong estimation (local) 78444948 78465702 69677 90313 NC_000014.9 scf7180000172773 99.26 True fake: scaffold gap size wrong estimation (local) 78466038 78473145 90645 97730 NC_000014.9 scf7180000172773 99.49 True fake: scaffold gap size wrong estimation (local) 78473420 78489931 97957 114440 NC_000014.9 scf7180000172773 99.44 True fake: scaffold gap size wrong estimation (local) 78490106 78523542 114548 147901 NC_000014.9 scf7180000172773 99.62 True fake: scaffold gap size wrong estimation (local) 78523836 78532154 148152 156470 NC_000014.9 scf7180000172773 99.95 True fake: scaffold gap size wrong estimation (local) 78533116 78536688 157344 160916 NC_000014.9 scf7180000172773 99.97 True fake: scaffold gap size wrong estimation (local) 78539282 78539845 162442 163005 NC_000014.9 scf7180000172773 98.58 True local misassembly 78538377 78539282 163201 164105 NC_000014.9 scf7180000172773 98.57 True fake: scaffold gap size wrong estimation (local) 78540737 78568973 165438 193741 NC_000014.9 scf7180000172773 99.89 True fake: scaffold gap size wrong estimation (local) 78569643 78578953 194181 203821 NC_000014.9 scf7180000172773 96.95 True fake: scaffold gap size wrong estimation (local) 78579550 78601504 204379 226666 NC_000014.9 scf7180000172773 98.59 True fake: scaffold gap size wrong estimation (local) 78601727 78615371 226785 240455 NC_000014.9 scf7180000172773 99.63 True fake: scaffold gap size wrong estimation (local) 78615517 78619597 240541 244621 NC_000014.9 scf7180000172773 99.9 True fake: scaffold gap size wrong estimation (local) 78619695 78630613 244764 255697 NC_000014.9 scf7180000172773 99.51 True fake: scaffold gap size wrong estimation (local) 78630824 78631963 255843 256982 NC_000014.9 scf7180000172773 99.65 True fake: scaffold gap size wrong estimation (local) 78633262 78643955 258239 268932 NC_000014.9 scf7180000172773 99.93 True fake: scaffold gap size wrong estimation (local) 78644156 78681963 269033 306931 NC_000014.9 scf7180000172773 99.13 True fake: scaffold gap size wrong estimation (local) 78682114 78700808 307055 325723 NC_000014.9 scf7180000172773 99.72 True fake: scaffold gap size wrong estimation (local) 78701043 78702401 325855 327213 NC_000014.9 scf7180000172773 99.85 True fake: scaffold gap size wrong estimation (local) 78702478 78719588 327291 344771 NC_000014.9 scf7180000172773 96.67 True fake: scaffold gap size wrong estimation (local) 78719741 78726281 344889 351427 NC_000014.9 scf7180000172773 99.86 True fake: scaffold gap size wrong estimation (local) 78726208 78760055 351604 385608 NC_000014.9 scf7180000172773 99.17 True fake: scaffold gap size wrong estimation (local) 78760308 78777806 385840 403328 NC_000014.9 scf7180000172773 99.65 True fake: scaffold gap size wrong estimation (local) 78778035 78778656 403639 404260 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 78778821 78794912 404376 420528 NC_000014.9 scf7180000172773 99.94 True fake: scaffold gap size wrong estimation (local) 78795046 78798122 420668 423748 NC_000014.9 scf7180000172773 99.55 True indel: indel (<= 5bp) 78798336 78802353 423960 427984 NC_000014.9 scf7180000172773 99.55 True fake: scaffold gap size wrong estimation (local) 78802471 78807627 428155 433504 NC_000014.9 scf7180000172773 96.99 True fake: scaffold gap size wrong estimation (local) 78807788 78814441 433648 440299 NC_000014.9 scf7180000172773 99.46 True indel: indel (<= 5bp) 78814561 78822484 440417 448363 NC_000014.9 scf7180000172773 99.84 True fake: scaffold gap size wrong estimation (local) 78822727 78823882 448605 449760 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 78824121 78840986 449921 466769 NC_000014.9 scf7180000172773 99.6 True indel: stretch of mismatches 78840987 78872243 466770 498729 NC_000014.9 scf7180000172773 96.74 True fake: scaffold gap size wrong estimation (local) 78872270 78879981 499741 507425 NC_000014.9 scf7180000172773 99.61 True fake: scaffold gap size wrong estimation (local) 78880262 78911968 507726 539383 NC_000014.9 scf7180000172773 99.62 True fake: scaffold gap size wrong estimation (local) 78912162 78913233 539552 540623 NC_000014.9 scf7180000172773 99.91 True fake: scaffold gap size wrong estimation (local) 78913474 78923996 540723 551108 NC_000014.9 scf7180000172773 98.66 True fake: scaffold gap size wrong estimation (local) 78924193 78926579 551233 553619 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 78926995 78928371 554055 555431 NC_000014.9 scf7180000172773 99.93 True fake: scaffold gap size wrong estimation (local) 78928829 78934710 555666 561609 NC_000014.9 scf7180000172773 98.81 True fake: scaffold gap size wrong estimation (local) 78934892 78938910 561787 565747 NC_000014.9 scf7180000172773 98.52 True fake: scaffold gap size wrong estimation (local) 78939120 78954598 565879 581320 NC_000014.9 scf7180000172773 99.67 True fake: scaffold gap size wrong estimation (local) 78954782 78958358 581430 585006 NC_000014.9 scf7180000172773 99.97 True fake: scaffold gap size wrong estimation (local) 78958607 78962835 585190 589423 NC_000014.9 scf7180000172773 99.95 True fake: scaffold gap size wrong estimation (local) 78962931 78968059 589520 594648 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 78968586 78983663 595111 610206 NC_000014.9 scf7180000172773 99.97 True fake: scaffold gap size wrong estimation (local) 78983871 78990362 610346 616840 NC_000014.9 scf7180000172773 99.97 True fake: scaffold gap size wrong estimation (local) 78990590 79007458 616971 633757 NC_000014.9 scf7180000172773 99.5 True fake: scaffold gap size wrong estimation (local) 79007808 79008649 633933 634774 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79008880 79020162 635116 646341 NC_000014.9 scf7180000172773 99.44 True fake: scaffold gap size wrong estimation (local) 79020530 79048767 646552 674788 NC_000014.9 scf7180000172773 99.57 True fake: scaffold gap size wrong estimation (local) 79049074 79054041 674952 679917 NC_000014.9 scf7180000172773 99.9 True fake: scaffold gap size wrong estimation (local) 79054179 79059264 680013 685098 NC_000014.9 scf7180000172773 99.78 True fake: scaffold gap size wrong estimation (local) 79059474 79073083 685246 698949 NC_000014.9 scf7180000172773 99.44 True fake: scaffold gap size wrong estimation (local) 79074776 79081371 700335 706933 NC_000014.9 scf7180000172773 99.62 True fake: scaffold gap size wrong estimation (local) 79081584 79110762 707071 736253 NC_000014.9 scf7180000172773 99.67 True fake: scaffold gap size wrong estimation (local) 79111006 79111539 736427 736960 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79111737 79115150 737160 740573 NC_000014.9 scf7180000172773 99.97 True fake: scaffold gap size wrong estimation (local) 79115337 79126200 740777 751640 NC_000014.9 scf7180000172773 99.89 True fake: scaffold gap size wrong estimation (local) 79131967 79133662 757693 759388 NC_000014.9 scf7180000172773 99.65 True fake: scaffold gap size wrong estimation (local) 79133840 79162118 759599 788149 NC_000014.9 scf7180000172773 99.07 True fake: scaffold gap size wrong estimation (local) 79162688 79174996 788638 800995 NC_000014.9 scf7180000172773 99.76 True fake: scaffold gap size wrong estimation (local) 79175254 79182291 801247 808318 NC_000014.9 scf7180000172773 99.49 True fake: scaffold gap size wrong estimation (local) 79182625 79188750 808640 814545 NC_000014.9 scf7180000172773 96.3 True fake: scaffold gap size wrong estimation (local) 79189363 79192980 815073 818684 NC_000014.9 scf7180000172773 99.72 True fake: scaffold gap size wrong estimation (local) 79193142 79208974 818872 834703 NC_000014.9 scf7180000172773 99.95 True fake: scaffold gap size wrong estimation (local) 79209117 79221755 834797 847323 NC_000014.9 scf7180000172773 98.98 True fake: scaffold gap size wrong estimation (local) 79222181 79234269 847664 859700 NC_000014.9 scf7180000172773 99.1 True fake: scaffold gap size wrong estimation (local) 79234450 79241812 859830 867195 NC_000014.9 scf7180000172773 99.88 True fake: scaffold gap size wrong estimation (local) 79242038 79264123 867313 889245 NC_000014.9 scf7180000172773 99.28 True fake: scaffold gap size wrong estimation (local) 79264321 79267554 889297 892594 NC_000014.9 scf7180000172773 99.38 True fake: scaffold gap size wrong estimation (local) 79267695 79269106 892707 894118 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79269312 79272972 894263 897825 NC_000014.9 scf7180000172773 96.83 True fake: scaffold gap size wrong estimation (local) 79274104 79289424 899097 914326 NC_000014.9 scf7180000172773 99.39 True fake: scaffold gap size wrong estimation (local) 79289582 79308858 914460 933714 NC_000014.9 scf7180000172773 99.85 True fake: scaffold gap size wrong estimation (local) 79314828 79316987 939869 942026 NC_000014.9 scf7180000172773 99.81 True fake: scaffold gap size wrong estimation (local) 79317193 79323605 942286 948697 NC_000014.9 scf7180000172773 99.98 True fake: scaffold gap size wrong estimation (local) 79323777 79348400 948832 973299 NC_000014.9 scf7180000172773 99.23 True fake: scaffold gap size wrong estimation (local) 79348648 79358934 973506 983656 NC_000014.9 scf7180000172773 98.66 True fake: scaffold gap size wrong estimation (local) 79359252 79362016 983894 986753 NC_000014.9 scf7180000172773 98.95 True fake: scaffold gap size wrong estimation (local) 79362290 79363023 987050 987783 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79363267 79365464 988027 990226 NC_000014.9 scf7180000172773 99.91 True fake: scaffold gap size wrong estimation (local) 79365732 79370330 990504 995120 NC_000014.9 scf7180000172773 99.98 True fake: scaffold gap size wrong estimation (local) 79370592 79377508 995341 1002245 NC_000014.9 scf7180000172773 99.74 True fake: scaffold gap size wrong estimation (local) 79377688 79380158 1002399 1004869 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79380828 79385091 1005597 1009891 NC_000014.9 scf7180000172773 99.74 True fake: scaffold gap size wrong estimation (local) 79388085 79390119 1014995 1017029 NC_000014.9 scf7180000172773 99.95 True fake: scaffold gap size wrong estimation (local) 79390322 79392529 1017337 1019544 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79393014 79395551 1020129 1022606 NC_000014.9 scf7180000172773 97.62 True fake: scaffold gap size wrong estimation (local) 79395703 79398807 1022731 1025835 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79399022 79401963 1025974 1028915 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79402198 79422716 1029023 1049503 NC_000014.9 scf7180000172773 99.58 True fake: scaffold gap size wrong estimation (local) 79422939 79441369 1049683 1068144 NC_000014.9 scf7180000172773 99.84 True fake: scaffold gap size wrong estimation (local) 79441594 79445123 1068289 1071818 NC_000014.9 scf7180000172773 99.94 True fake: scaffold gap size wrong estimation (local) 79445341 79449739 1071977 1076375 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79450012 79450757 1076574 1077319 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79450861 79462142 1077442 1088802 NC_000014.9 scf7180000172773 98.25 True fake: scaffold gap size wrong estimation (local) 79462270 79489887 1088975 1116410 NC_000014.9 scf7180000172773 99.29 True fake: scaffold gap size wrong estimation (local) 79490333 79511949 1116877 1138833 NC_000014.9 scf7180000172773 97.01 True fake: scaffold gap size wrong estimation (local) 79512100 79526043 1138968 1152899 NC_000014.9 scf7180000172773 99.45 True fake: scaffold gap size wrong estimation (local) 79526240 79527030 1153017 1153807 NC_000014.9 scf7180000172773 99.87 True fake: scaffold gap size wrong estimation (local) 79527878 79537365 1154685 1164177 NC_000014.9 scf7180000172773 99.69 True fake: scaffold gap size wrong estimation (local) 79538592 79541262 1165299 1167969 NC_000014.9 scf7180000172773 99.89 True fake: scaffold gap size wrong estimation (local) 79541366 79545907 1168136 1172676 NC_000014.9 scf7180000172773 99.91 True fake: not a misassembly (possible transposable element) 27421677 27423058 1174181 1172800 NC_000014.9 scf7180000172773 99.86 True fake: not a misassembly (possible transposable element) 79546139 79548098 1174530 1176489 NC_000014.9 scf7180000172773 99.9 True fake: scaffold gap size wrong estimation (local) 79548752 79549976 1177453 1178677 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79550174 79560511 1178951 1189436 NC_000014.9 scf7180000172773 98.69 True fake: scaffold gap size wrong estimation (local) 79560762 79585496 1189610 1214997 NC_000014.9 scf7180000172773 97.32 True fake: scaffold gap size wrong estimation (local) 79585699 79599745 1215111 1229184 NC_000014.9 scf7180000172773 99.0 True fake: scaffold gap size wrong estimation (local) 79599987 79601052 1229332 1230397 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79601234 79603948 1230579 1233293 NC_000014.9 scf7180000172773 100.0 True fake: scaffold gap size wrong estimation (local) 79604969 79629839 1234354 1259110 NC_000014.9 scf7180000172773 98.81 True CONTIG scf7180000172773 1261324 correct 53128134 53133922 2424 8211 NC_000014.9 scf7180000172774 99.38 True fake: scaffold gap size wrong estimation (local) 53135086 53137375 9369 11658 NC_000014.9 scf7180000172774 97.21 True fake: scaffold gap size wrong estimation (local) 53137539 53145958 11957 20374 NC_000014.9 scf7180000172774 99.41 True fake: scaffold gap size wrong estimation (local) 53146148 53148424 20574 22874 NC_000014.9 scf7180000172774 99.65 True fake: scaffold gap size wrong estimation (local) 53148594 53155164 23014 29589 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 53155463 53158328 29867 32732 NC_000014.9 scf7180000172774 99.93 True fake: scaffold gap size wrong estimation (local) 53158586 53162570 32930 36995 NC_000014.9 scf7180000172774 97.47 True fake: scaffold gap size wrong estimation (local) 53162758 53166871 37156 41263 NC_000014.9 scf7180000172774 97.8 True fake: scaffold gap size wrong estimation (local) 53167030 53168393 41451 42814 NC_000014.9 scf7180000172774 99.93 True fake: scaffold gap size wrong estimation (local) 53168644 53169408 43067 43831 NC_000014.9 scf7180000172774 99.87 True fake: scaffold gap size wrong estimation (local) 53169573 53171320 43964 45711 NC_000014.9 scf7180000172774 99.94 True fake: scaffold gap size wrong estimation (local) 53171551 53172409 45999 46857 NC_000014.9 scf7180000172774 99.53 True fake: scaffold gap size wrong estimation (local) 53172732 53173649 47033 47950 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 53173800 53178322 48322 52720 NC_000014.9 scf7180000172774 97.11 True indel: indel (<= 5bp) 53178391 53185097 52790 59495 NC_000014.9 scf7180000172774 97.65 True fake: scaffold gap size wrong estimation (local) 53185359 53189324 59753 63718 NC_000014.9 scf7180000172774 99.97 True fake: scaffold gap size wrong estimation (local) 53189560 53190448 63853 64741 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 53190449 53191170 64766 65487 NC_000014.9 scf7180000172774 99.86 True indel: indel (<= 5bp) 53191173 53193323 65488 67638 NC_000014.9 scf7180000172774 99.86 True local misassembly 53194120 53195076 67639 68595 NC_000014.9 scf7180000172774 97.7 True fake: scaffold gap size wrong estimation (local) 53195649 53205043 69412 78857 NC_000014.9 scf7180000172774 99.48 True fake: not a misassembly (possible transposable element) 63304563 63305786 78858 80079 NC_000014.9 scf7180000172774 99.68 True fake: not a misassembly (possible transposable element) 53205483 53207007 80132 81656 NC_000014.9 scf7180000172774 99.67 True fake: scaffold gap size wrong estimation (local) 53207008 53207974 81693 82659 NC_000014.9 scf7180000172774 99.79 True fake: scaffold gap size wrong estimation (local) 53208324 53209925 83383 84984 NC_000014.9 scf7180000172774 99.88 True fake: scaffold gap size wrong estimation (local) 53210501 53216720 85413 91685 NC_000014.9 scf7180000172774 98.78 True fake: scaffold gap size wrong estimation (local) 53216940 53219940 91894 94893 NC_000014.9 scf7180000172774 99.63 True fake: scaffold gap size wrong estimation (local) 53220066 53220809 95103 95846 NC_000014.9 scf7180000172774 99.87 True fake: scaffold gap size wrong estimation (local) 53220930 53223075 95960 98105 NC_000014.9 scf7180000172774 99.67 True fake: scaffold gap size wrong estimation (local) 53223794 53229695 98793 104694 NC_000014.9 scf7180000172774 99.88 True fake: scaffold gap size wrong estimation (local) 53230244 53232227 105256 107239 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 53232652 53233818 107750 108949 NC_000014.9 scf7180000172774 98.47 True fake: scaffold gap size wrong estimation (local) 53234064 53242868 108998 117960 NC_000014.9 scf7180000172774 99.82 True fake: scaffold gap size wrong estimation (local) 53243104 53256141 118110 131288 NC_000014.9 scf7180000172774 99.03 True fake: scaffold gap size wrong estimation (local) 53256746 53258101 132233 133588 NC_000014.9 scf7180000172774 99.85 True local misassembly 53259408 53260882 134577 136051 NC_000014.9 scf7180000172774 100.0 True relocation, scaffold gap is present, inconsistency = -30056600 23204548 23205251 136317 137020 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23206663 23208759 138157 140254 NC_000014.9 scf7180000172774 99.76 True fake: not a misassembly (possible transposable element) 18938914 18940095 141456 140275 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 23209017 23210771 141482 143236 NC_000014.9 scf7180000172774 99.94 True fake: scaffold gap size wrong estimation (local) 23211170 23211885 144815 145530 NC_000014.9 scf7180000172774 96.79 True local misassembly 23211980 23212557 145531 146108 NC_000014.9 scf7180000172774 96.54 True fake: scaffold gap size wrong estimation (local) 23214364 23215997 146238 147871 NC_000014.9 scf7180000172774 99.94 True fake: scaffold gap size wrong estimation (local) 23217257 23218124 149275 150142 NC_000014.9 scf7180000172774 99.88 True local misassembly 23218279 23219640 150143 151504 NC_000014.9 scf7180000172774 97.72 True fake: scaffold gap size wrong estimation (local) 23220727 23222865 152945 155083 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 23223626 23226044 156254 158702 NC_000014.9 scf7180000172774 99.47 True fake: scaffold gap size wrong estimation (local) 23226861 23227977 159610 160727 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 23228124 23230399 160785 163218 NC_000014.9 scf7180000172774 99.96 True fake: scaffold gap size wrong estimation (local) 23230683 23231641 163475 164433 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23234029 23234994 166444 167409 NC_000014.9 scf7180000172774 99.69 True fake: scaffold gap size wrong estimation (local) 23235110 23236967 167521 169378 NC_000014.9 scf7180000172774 99.14 True fake: scaffold gap size wrong estimation (local) 23237402 23238617 169924 171139 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 23239994 23241609 172547 174162 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23242216 23242917 174888 175589 NC_000014.9 scf7180000172774 99.86 True indel: indel (<= 5bp) 23242918 23243589 175591 176262 NC_000014.9 scf7180000172774 100.0 True local misassembly 23243972 23246217 176263 178508 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23246218 23246955 178621 179358 NC_000014.9 scf7180000172774 100.0 True indel: indel (> 5bp) 23247027 23248466 179359 180798 NC_000014.9 scf7180000172774 98.61 True fake: scaffold gap size wrong estimation (local) 23248568 23251560 180900 183826 NC_000014.9 scf7180000172774 97.73 True fake: scaffold gap size wrong estimation (local) 23251782 23256529 184002 188886 NC_000014.9 scf7180000172774 96.56 True fake: scaffold gap size wrong estimation (local) 23257102 23259298 189476 191695 NC_000014.9 scf7180000172774 99.41 True fake: scaffold gap size wrong estimation (local) 23259462 23260984 191920 193442 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23261930 23263140 194646 195856 NC_000014.9 scf7180000172774 98.35 True fake: scaffold gap size wrong estimation (local) 23265042 23266412 197905 199275 NC_000014.9 scf7180000172774 99.85 True local misassembly 23263594 23264820 200118 201344 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 23266621 23267418 201511 202308 NC_000014.9 scf7180000172774 97.49 True fake: scaffold gap size wrong estimation (local) 23267624 23269047 202485 203908 NC_000014.9 scf7180000172774 98.53 True indel: indel (> 5bp) 23269114 23269624 203909 204419 NC_000014.9 scf7180000172774 95.89 True fake: scaffold gap size wrong estimation (local) 23269625 23271364 204542 206281 NC_000014.9 scf7180000172774 95.52 True fake: scaffold gap size wrong estimation (local) 23271503 23272160 206360 207017 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23272345 23274656 207233 209544 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23274909 23279451 209760 214242 NC_000014.9 scf7180000172774 97.51 True fake: scaffold gap size wrong estimation (local) 23279752 23280702 214593 215543 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23280921 23288213 215715 222965 NC_000014.9 scf7180000172774 99.33 True fake: scaffold gap size wrong estimation (local) 23288499 23290599 223161 225261 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 23290789 23292314 225474 227009 NC_000014.9 scf7180000172774 99.93 True fake: scaffold gap size wrong estimation (local) 23292906 23294026 227737 228857 NC_000014.9 scf7180000172774 98.22 True fake: scaffold gap size wrong estimation (local) 23294212 23294861 228911 229560 NC_000014.9 scf7180000172774 99.85 True fake: scaffold gap size wrong estimation (local) 23295154 23303512 229961 238339 NC_000014.9 scf7180000172774 99.93 True fake: scaffold gap size wrong estimation (local) 23303766 23313802 238565 248523 NC_000014.9 scf7180000172774 99.05 True fake: scaffold gap size wrong estimation (local) 23314206 23315899 248997 250690 NC_000014.9 scf7180000172774 99.94 True fake: scaffold gap size wrong estimation (local) 23316107 23316615 250789 251297 NC_000014.9 scf7180000172774 99.8 True fake: scaffold gap size wrong estimation (local) 23317014 23318202 251935 253123 NC_000014.9 scf7180000172774 99.75 True local misassembly 23318471 23319264 253124 253917 NC_000014.9 scf7180000172774 97.36 True fake: scaffold gap size wrong estimation (local) 23319371 23329006 254287 264004 NC_000014.9 scf7180000172774 99.42 True fake: scaffold gap size wrong estimation (local) 23330501 23332085 265418 267011 NC_000014.9 scf7180000172774 99.3 True fake: scaffold gap size wrong estimation (local) 23333203 23333799 268062 268658 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23333957 23335387 268850 270280 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23335635 23336491 270420 271276 NC_000014.9 scf7180000172774 99.77 True fake: scaffold gap size wrong estimation (local) 23336492 23337189 271655 272352 NC_000014.9 scf7180000172774 99.71 True fake: scaffold gap size wrong estimation (local) 23337430 23343936 272420 278926 NC_000014.9 scf7180000172774 99.88 True fake: scaffold gap size wrong estimation (local) 23344121 23350095 279109 285098 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 23350248 23360553 285266 295574 NC_000014.9 scf7180000172774 99.92 True fake: scaffold gap size wrong estimation (local) 23363193 23386104 297969 320898 NC_000014.9 scf7180000172774 99.98 True fake: not a misassembly (possible transposable element) 23417551 23418356 321438 322243 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 23386522 23394931 322264 330672 NC_000014.9 scf7180000172774 99.96 True fake: scaffold gap size wrong estimation (local) 23395073 23395610 330799 331336 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23396974 23397959 332610 333595 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23398287 23413330 333899 348964 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 23413524 23415723 349148 351348 NC_000014.9 scf7180000172774 99.82 True fake: scaffold gap size wrong estimation (local) 23416211 23417647 351837 353273 NC_000014.9 scf7180000172774 99.79 True fake: scaffold gap size wrong estimation (local) 23418327 23420218 354013 355904 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 23423452 23429454 359138 365140 NC_000014.9 scf7180000172774 99.9 True fake: scaffold gap size wrong estimation (local) 23429677 23455278 365817 391047 NC_000014.9 scf7180000172774 98.31 True fake: scaffold gap size wrong estimation (local) 23455560 23457367 391256 393167 NC_000014.9 scf7180000172774 99.28 True fake: scaffold gap size wrong estimation (local) 23457623 23460397 393274 396059 NC_000014.9 scf7180000172774 99.93 True fake: scaffold gap size wrong estimation (local) 23460535 23462355 396234 398051 NC_000014.9 scf7180000172774 99.73 True fake: scaffold gap size wrong estimation (local) 23462859 23463443 398386 398970 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23464081 23465109 399677 400705 NC_000014.9 scf7180000172774 99.81 True fake: scaffold gap size wrong estimation (local) 23465110 23465700 400835 401425 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23466450 23467722 402172 403444 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 23468225 23470718 404028 406521 NC_000014.9 scf7180000172774 99.84 True indel: indel (<= 5bp) 23470882 23471678 406683 407479 NC_000014.9 scf7180000172774 99.87 True fake: scaffold gap size wrong estimation (local) 23474040 23478729 409603 414293 NC_000014.9 scf7180000172774 99.81 True fake: scaffold gap size wrong estimation (local) 23478822 23480047 414599 415819 NC_000014.9 scf7180000172774 99.1 True fake: scaffold gap size wrong estimation (local) 23480372 23489313 416109 425047 NC_000014.9 scf7180000172774 99.82 True fake: scaffold gap size wrong estimation (local) 23489548 23497068 425198 432686 NC_000014.9 scf7180000172774 98.77 True fake: scaffold gap size wrong estimation (local) 23497051 23497746 434346 435041 NC_000014.9 scf7180000172774 99.86 True fake: scaffold gap size wrong estimation (local) 23499364 23501239 435793 437682 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 23502178 23504184 438377 440379 NC_000014.9 scf7180000172774 99.5 True fake: scaffold gap size wrong estimation (local) 23504982 23505767 441070 441855 NC_000014.9 scf7180000172774 99.62 True fake: scaffold gap size wrong estimation (local) 23506132 23506942 442246 443056 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23507196 23527910 443397 464292 NC_000014.9 scf7180000172774 99.38 True fake: scaffold gap size wrong estimation (local) 23528105 23535669 464503 472066 NC_000014.9 scf7180000172774 99.87 True fake: scaffold gap size wrong estimation (local) 23535844 23536902 472187 473245 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23537024 23540989 473343 477308 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23541414 23544065 477668 480319 NC_000014.9 scf7180000172774 99.43 True fake: scaffold gap size wrong estimation (local) 23544280 23552535 480543 488867 NC_000014.9 scf7180000172774 99.73 True fake: scaffold gap size wrong estimation (local) 23552783 23553337 489221 489775 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 23553926 23570379 490489 506918 NC_000014.9 scf7180000172774 99.69 True fake: scaffold gap size wrong estimation (local) 23570600 23574034 507106 510540 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 50489201 50490095 511435 510541 NC_000014.9 scf7180000172774 99.89 True fake: not a misassembly (possible transposable element) 23574399 23581514 511461 518613 NC_000014.9 scf7180000172774 98.26 True fake: scaffold gap size wrong estimation (local) 23581466 23582042 518808 519384 NC_000014.9 scf7180000172774 99.65 True local misassembly 23582145 23583718 519398 520971 NC_000014.9 scf7180000172774 98.73 True fake: scaffold gap size wrong estimation (local) 23583719 23584319 521431 522031 NC_000014.9 scf7180000172774 99.5 True relocation, scaffold gap is present, inconsistency = 10803383 34391346 34393119 527448 525675 NC_000014.9 scf7180000172774 99.77 True fake: scaffold gap size wrong estimation (local) 34389520 34390670 529353 528203 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 34386650 34389339 532207 529518 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 34382160 34385158 536712 533629 NC_000014.9 scf7180000172774 99.63 True fake: scaffold gap size wrong estimation (local) 34371262 34381656 547573 537247 NC_000014.9 scf7180000172774 98.68 True fake: scaffold gap size wrong estimation (local) 34367150 34371072 551710 547801 NC_000014.9 scf7180000172774 99.35 True fake: scaffold gap size wrong estimation (local) 34364958 34366981 553839 551847 NC_000014.9 scf7180000172774 98.2 True fake: scaffold gap size wrong estimation (local) 34362619 34364744 556170 554044 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 34357873 34362362 560943 556425 NC_000014.9 scf7180000172774 99.69 True fake: scaffold gap size wrong estimation (local) 34355062 34357526 563658 561194 NC_000014.9 scf7180000172774 99.96 True fake: scaffold gap size wrong estimation (local) 34354265 34355061 564747 563951 NC_000014.9 scf7180000172774 97.49 True indel: indel (> 5bp) 34353184 34354189 565753 564748 NC_000014.9 scf7180000172774 95.03 True indel: indel (> 5bp) 34350866 34353168 568056 565754 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 34345414 34348012 573335 570778 NC_000014.9 scf7180000172774 98.31 True fake: scaffold gap size wrong estimation (local) 34342774 34345371 575926 573437 NC_000014.9 scf7180000172774 95.68 True fake: scaffold gap size wrong estimation (local) 34341780 34342643 577039 576176 NC_000014.9 scf7180000172774 98.5 True fake: scaffold gap size wrong estimation (local) 34340898 34341572 577944 577270 NC_000014.9 scf7180000172774 98.52 True fake: scaffold gap size wrong estimation (local) 34340087 34340897 578765 577955 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 34333590 34338987 585328 579906 NC_000014.9 scf7180000172774 99.43 True fake: scaffold gap size wrong estimation (local) 34324152 34333333 594746 585501 NC_000014.9 scf7180000172774 98.73 True fake: scaffold gap size wrong estimation (local) 34321899 34323878 596997 595018 NC_000014.9 scf7180000172774 99.9 True fake: scaffold gap size wrong estimation (local) 34306255 34321770 612662 597094 NC_000014.9 scf7180000172774 99.55 True fake: scaffold gap size wrong estimation (local) 34297206 34306113 621631 612781 NC_000014.9 scf7180000172774 98.64 True relocation, scaffold gap is present, inconsistency = 15714260 18579415 18580197 625162 624380 NC_000014.9 scf7180000172774 99.87 True fake: scaffold gap size wrong estimation (local) 18576295 18578658 628167 625804 NC_000014.9 scf7180000172774 99.32 True fake: scaffold gap size wrong estimation (local) 18574151 18575716 630331 628766 NC_000014.9 scf7180000172774 99.68 True fake: not a misassembly (possible transposable element) 34293030 34294120 631480 630390 NC_000014.9 scf7180000172774 99.91 True fake: not a misassembly (possible transposable element) 18572529 18573258 632300 631564 NC_000014.9 scf7180000172774 98.37 True relocation, scaffold gap is present, inconsistency = -15719791 34291493 34292133 633127 632487 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 34288639 34291295 635947 633278 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 34285326 34288179 639298 636370 NC_000014.9 scf7180000172774 97.42 True fake: scaffold gap size wrong estimation (local) 34281584 34285166 642974 639391 NC_000014.9 scf7180000172774 99.86 True fake: scaffold gap size wrong estimation (local) 34278707 34281523 645799 643044 NC_000014.9 scf7180000172774 96.53 True fake: scaffold gap size wrong estimation (local) 34273896 34278528 650747 646206 NC_000014.9 scf7180000172774 95.16 True fake: scaffold gap size wrong estimation (local) 34257006 34273296 667487 651152 NC_000014.9 scf7180000172774 99.8 True fake: scaffold gap size wrong estimation (local) 34245866 34256899 678624 667635 NC_000014.9 scf7180000172774 99.2 True fake: scaffold gap size wrong estimation (local) 34240307 34245643 684096 678760 NC_000014.9 scf7180000172774 99.98 True fake: scaffold gap size wrong estimation (local) 34232025 34240260 692456 684221 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 34230909 34232024 695386 694271 NC_000014.9 scf7180000172774 99.91 True indel: indel (> 5bp) 34225692 34230908 700609 695393 NC_000014.9 scf7180000172774 99.73 True indel: indel (> 5bp) 34224153 34225644 702101 700610 NC_000014.9 scf7180000172774 98.39 True indel: indel (<= 5bp) 34221974 34224152 704282 702104 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 34216212 34221878 710312 704358 NC_000014.9 scf7180000172774 95.25 True fake: scaffold gap size wrong estimation (local) 34204297 34215952 721745 710515 NC_000014.9 scf7180000172774 95.88 True fake: scaffold gap size wrong estimation (local) 34195275 34204110 731036 722055 NC_000014.9 scf7180000172774 99.43 True fake: scaffold gap size wrong estimation (local) 34186652 34193178 739587 733056 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 34170830 34185382 755524 740768 NC_000014.9 scf7180000172774 98.46 True fake: scaffold gap size wrong estimation (local) 34163552 34170683 762745 755616 NC_000014.9 scf7180000172774 99.9 True fake: scaffold gap size wrong estimation (local) 34159885 34163445 766381 762821 NC_000014.9 scf7180000172774 99.83 True fake: scaffold gap size wrong estimation (local) 34156067 34159534 770164 766697 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 19434181 19434934 771447 770693 NC_000014.9 scf7180000172774 99.34 True fake: not a misassembly (possible transposable element) 34127627 34141123 798435 784958 NC_000014.9 scf7180000172774 99.38 True fake: scaffold gap size wrong estimation (local) 34109024 34127426 817359 798574 NC_000014.9 scf7180000172774 97.91 True fake: scaffold gap size wrong estimation (local) 34095117 34108888 831527 817701 NC_000014.9 scf7180000172774 99.68 True fake: scaffold gap size wrong estimation (local) 34092899 34094880 833690 831709 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 34079908 34092622 846552 833895 NC_000014.9 scf7180000172774 99.5 True fake: scaffold gap size wrong estimation (local) 34076833 34078612 849672 847792 NC_000014.9 scf7180000172774 97.13 True fake: scaffold gap size wrong estimation (local) 34067732 34076701 858817 849843 NC_000014.9 scf7180000172774 99.68 True fake: not a misassembly (possible transposable element) 66392121 66393464 858818 860161 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 34057059 34068186 871377 860212 NC_000014.9 scf7180000172774 99.54 True fake: scaffold gap size wrong estimation (local) 34054856 34056839 873667 871690 NC_000014.9 scf7180000172774 99.64 True fake: scaffold gap size wrong estimation (local) 34051461 34054634 877003 873830 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 34048193 34051285 880179 877116 NC_000014.9 scf7180000172774 98.95 True fake: scaffold gap size wrong estimation (local) 34045861 34047445 882922 881338 NC_000014.9 scf7180000172774 98.23 True local misassembly 34043492 34045497 884928 882923 NC_000014.9 scf7180000172774 97.36 True local misassembly 34033666 34043394 894657 884929 NC_000014.9 scf7180000172774 99.92 True fake: not a misassembly (possible transposable element) 21579418 21580616 894814 896012 NC_000014.9 scf7180000172774 99.75 True fake: not a misassembly (possible transposable element) 34027589 34033426 901905 896068 NC_000014.9 scf7180000172774 99.59 True fake: scaffold gap size wrong estimation (local) 34017814 34026351 912202 903327 NC_000014.9 scf7180000172774 99.17 True fake: scaffold gap size wrong estimation (local) 34012935 34017628 916950 912352 NC_000014.9 scf7180000172774 97.57 True fake: scaffold gap size wrong estimation (local) 34009670 34012723 920153 917101 NC_000014.9 scf7180000172774 99.8 True fake: not a misassembly (possible transposable element) 64526093 64526844 920174 920925 NC_000014.9 scf7180000172774 99.73 True fake: not a misassembly (possible transposable element) 33999414 34009839 931430 920927 NC_000014.9 scf7180000172774 99.66 True fake: scaffold gap size wrong estimation (local) 33986331 33999240 944462 931546 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 33984897 33986051 945905 944751 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 33982520 33983767 948174 946927 NC_000014.9 scf7180000172774 99.04 True fake: scaffold gap size wrong estimation (local) 33981589 33982329 949451 948711 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33978286 33980498 952459 950247 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 33973334 33977861 957277 952840 NC_000014.9 scf7180000172774 97.12 True fake: scaffold gap size wrong estimation (local) 33961446 33973255 969306 957365 NC_000014.9 scf7180000172774 97.41 True fake: scaffold gap size wrong estimation (local) 33958316 33960285 972384 970415 NC_000014.9 scf7180000172774 99.85 True indel: indel (<= 5bp) 33955634 33958249 975067 972452 NC_000014.9 scf7180000172774 99.85 True fake: scaffold gap size wrong estimation (local) 33952214 33953221 978149 977142 NC_000014.9 scf7180000172774 99.9 True fake: scaffold gap size wrong estimation (local) 33947838 33952213 983822 979447 NC_000014.9 scf7180000172774 98.79 True indel: indel (> 5bp) 33946249 33947797 985371 983823 NC_000014.9 scf7180000172774 99.68 True fake: scaffold gap size wrong estimation (local) 33944387 33946214 987303 985476 NC_000014.9 scf7180000172774 99.84 True fake: scaffold gap size wrong estimation (local) 33939467 33944173 992168 987462 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 33936199 33939228 995380 992352 NC_000014.9 scf7180000172774 99.9 True fake: scaffold gap size wrong estimation (local) 33927380 33935977 1004133 995531 NC_000014.9 scf7180000172774 99.71 True fake: scaffold gap size wrong estimation (local) 33924940 33927179 1006527 1004288 NC_000014.9 scf7180000172774 99.02 True indel: indel (<= 5bp) 33923650 33924537 1007820 1006933 NC_000014.9 scf7180000172774 99.55 True fake: scaffold gap size wrong estimation (local) 33922721 33923649 1008766 1007838 NC_000014.9 scf7180000172774 97.85 True indel: indel (> 5bp) 33921098 33922692 1010361 1008767 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33920408 33921097 1011725 1011036 NC_000014.9 scf7180000172774 96.81 True local misassembly 33914379 33920157 1017504 1011726 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 33913607 33914172 1018277 1017712 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33910347 33913346 1021455 1018456 NC_000014.9 scf7180000172774 99.97 True fake: not a misassembly (possible transposable element) 77011368 77012291 1021456 1022379 NC_000014.9 scf7180000172774 100.0 True fake: not a misassembly (possible transposable element) 33901412 33910385 1031370 1022401 NC_000014.9 scf7180000172774 99.96 True fake: scaffold gap size wrong estimation (local) 33898962 33901224 1033855 1031594 NC_000014.9 scf7180000172774 99.96 True fake: scaffold gap size wrong estimation (local) 33896353 33898771 1036454 1034054 NC_000014.9 scf7180000172774 98.56 True fake: scaffold gap size wrong estimation (local) 33893649 33896068 1039047 1036628 NC_000014.9 scf7180000172774 99.83 True fake: scaffold gap size wrong estimation (local) 33887673 33893381 1044987 1039279 NC_000014.9 scf7180000172774 99.98 True fake: scaffold gap size wrong estimation (local) 33882927 33887422 1049647 1045152 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33870329 33882755 1062822 1050382 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 33867998 33870069 1065180 1063109 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33865828 33867198 1067273 1065903 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33864507 33865414 1068488 1067561 NC_000014.9 scf7180000172774 99.89 True fake: scaffold gap size wrong estimation (local) 33861903 33864412 1071763 1069254 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33860944 33861902 1074003 1073045 NC_000014.9 scf7180000172774 99.48 True fake: scaffold gap size wrong estimation (local) 33859949 33860943 1075013 1074019 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 33854332 33859751 1080609 1075176 NC_000014.9 scf7180000172774 99.91 True fake: scaffold gap size wrong estimation (local) 33850662 33853623 1084300 1081339 NC_000014.9 scf7180000172774 99.97 True fake: scaffold gap size wrong estimation (local) 33832382 33850050 1102550 1084860 NC_000014.9 scf7180000172774 99.83 True fake: scaffold gap size wrong estimation (local) 33826089 33827563 1108300 1106825 NC_000014.9 scf7180000172774 96.75 True indel: indel (<= 5bp) 33824810 33825815 1109576 1108571 NC_000014.9 scf7180000172774 99.8 True fake: scaffold gap size wrong estimation (local) 33811271 33824463 1123047 1110072 NC_000014.9 scf7180000172774 96.99 True fake: scaffold gap size wrong estimation (local) 33789864 33811064 1144323 1123068 NC_000014.9 scf7180000172774 99.58 True fake: scaffold gap size wrong estimation (local) 33785437 33789586 1148750 1144583 NC_000014.9 scf7180000172774 99.95 True fake: scaffold gap size wrong estimation (local) 33747330 33784740 1187238 1149430 NC_000014.9 scf7180000172774 97.25 True fake: scaffold gap size wrong estimation (local) 33663461 33746209 1271615 1188353 NC_000014.9 scf7180000172774 99.4 True relocation, scaffold gap is present, inconsistency = -57416848 91077713 91078224 1274211 1273700 NC_000014.9 scf7180000172774 100.0 True local misassembly 91078148 91078897 1275021 1274272 NC_000014.9 scf7180000172774 100.0 True fake: scaffold gap size wrong estimation (local) 91075076 91075915 1277475 1276636 NC_000014.9 scf7180000172774 99.88 True relocation, scaffold gap is present, inconsistency = 16974206 74097619 74098378 1280726 1279967 NC_000014.9 scf7180000172774 99.74 True fake: scaffold gap size wrong estimation (local) 74095323 74096181 1283286 1282428 NC_000014.9 scf7180000172774 99.89 True fake: not a misassembly (possible transposable element) 23439821 23441970 1283287 1285436 NC_000014.9 scf7180000172774 99.81 True fake: not a misassembly (possible transposable element) 74092556 74093185 1286086 1285457 NC_000014.9 scf7180000172774 100.0 True CONTIG scf7180000172774 1286110 misassembled 52897983 52899309 1 1329 NC_000014.9 scf7180000172775 99.7 True fake: scaffold gap size wrong estimation (local) 52899523 52901005 1467 2958 NC_000014.9 scf7180000172775 99.2 True fake: scaffold gap size wrong estimation (local) 52901274 52902142 3204 4072 NC_000014.9 scf7180000172775 99.65 True fake: scaffold gap size wrong estimation (local) 52902829 52904260 4672 6103 NC_000014.9 scf7180000172775 95.81 True fake: scaffold gap size wrong estimation (local) 52904597 52909705 6467 11551 NC_000014.9 scf7180000172775 98.94 True fake: scaffold gap size wrong estimation (local) 52910036 52911397 11847 13208 NC_000014.9 scf7180000172775 99.93 True fake: scaffold gap size wrong estimation (local) 52911651 52912521 13351 14221 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 52912767 52916140 14483 17905 NC_000014.9 scf7180000172775 97.59 True fake: scaffold gap size wrong estimation (local) 52916314 52933519 18040 35330 NC_000014.9 scf7180000172775 99.49 True fake: scaffold gap size wrong estimation (local) 52933739 52938659 35524 40373 NC_000014.9 scf7180000172775 98.48 True fake: scaffold gap size wrong estimation (local) 52939203 52942319 40906 44044 NC_000014.9 scf7180000172775 99.71 True fake: scaffold gap size wrong estimation (local) 52942971 52956818 44531 58631 NC_000014.9 scf7180000172775 98.71 True fake: scaffold gap size wrong estimation (local) 52957065 52959039 58828 60904 NC_000014.9 scf7180000172775 95.67 True fake: scaffold gap size wrong estimation (local) 52959267 52965821 61120 67664 NC_000014.9 scf7180000172775 99.79 True fake: scaffold gap size wrong estimation (local) 52966352 52968826 67959 70338 NC_000014.9 scf7180000172775 96.01 True indel: indel (<= 5bp) 52968876 52971421 70385 72876 NC_000014.9 scf7180000172775 97.53 True fake: scaffold gap size wrong estimation (local) 52971674 52978906 73016 80066 NC_000014.9 scf7180000172775 97.31 True fake: scaffold gap size wrong estimation (local) 52979108 52981036 80350 82290 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 52982280 52983482 84915 86120 NC_000014.9 scf7180000172775 99.5 True local misassembly 52981273 52982482 86766 87975 NC_000014.9 scf7180000172775 99.83 True relocation, scaffold gap is present, inconsistency = 4969482 57952720 57953528 89538 88731 NC_000014.9 scf7180000172775 99.51 True indel: indel (<= 5bp) 57949441 57952557 92812 89698 NC_000014.9 scf7180000172775 99.81 True fake: scaffold gap size wrong estimation (local) 57949071 57949617 93934 93388 NC_000014.9 scf7180000172775 99.45 True fake: scaffold gap size wrong estimation (local) 57946690 57948632 96097 94160 NC_000014.9 scf7180000172775 99.28 True fake: scaffold gap size wrong estimation (local) 57927720 57946036 114975 96812 NC_000014.9 scf7180000172775 98.97 True fake: scaffold gap size wrong estimation (local) 57924987 57927509 117631 115173 NC_000014.9 scf7180000172775 97.46 True fake: scaffold gap size wrong estimation (local) 57900810 57924596 142086 118070 NC_000014.9 scf7180000172775 97.09 True fake: not a misassembly (possible transposable element) 38975413 38975914 142107 142608 NC_000014.9 scf7180000172775 100.0 True fake: not a misassembly (possible transposable element) 57877898 57900838 165615 142731 NC_000014.9 scf7180000172775 99.63 True fake: scaffold gap size wrong estimation (local) 57868684 57875565 174584 167703 NC_000014.9 scf7180000172775 99.99 True fake: scaffold gap size wrong estimation (local) 57858653 57868502 184549 174705 NC_000014.9 scf7180000172775 99.93 True fake: scaffold gap size wrong estimation (local) 57857198 57857962 185871 185107 NC_000014.9 scf7180000172775 97.25 True local misassembly 57855644 57857063 187291 185872 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 57849432 57855544 193502 187390 NC_000014.9 scf7180000172775 99.89 True fake: scaffold gap size wrong estimation (local) 57836561 57849349 206523 193735 NC_000014.9 scf7180000172775 99.99 True fake: scaffold gap size wrong estimation (local) 57805484 57836383 237986 206704 NC_000014.9 scf7180000172775 98.98 True fake: scaffold gap size wrong estimation (local) 57803705 57804461 239710 238954 NC_000014.9 scf7180000172775 100.0 True local misassembly 57804743 57805250 240238 239731 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 57801253 57802971 244524 242806 NC_000014.9 scf7180000172775 99.77 True fake: scaffold gap size wrong estimation (local) 57792522 57801015 253198 244692 NC_000014.9 scf7180000172775 99.99 True fake: scaffold gap size wrong estimation (local) 57789755 57790934 256639 255460 NC_000014.9 scf7180000172775 99.83 True fake: scaffold gap size wrong estimation (local) 57780176 57789209 266100 257067 NC_000014.9 scf7180000172775 99.99 True fake: scaffold gap size wrong estimation (local) 57778789 57779685 267275 266379 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 57777665 57778788 268855 267732 NC_000014.9 scf7180000172775 100.0 True relocation, scaffold gap is present, inconsistency = 28911656 28854750 28865137 280291 269727 NC_000014.9 scf7180000172775 97.24 True fake: scaffold gap size wrong estimation (local) 28851697 28853965 283369 281101 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28850638 28851367 284638 283909 NC_000014.9 scf7180000172775 96.03 True fake: scaffold gap size wrong estimation (local) 28849122 28849706 285868 285284 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28847313 28848149 287504 286604 NC_000014.9 scf7180000172775 97.84 True indel: indel (<= 5bp) 28837122 28847057 297697 287759 NC_000014.9 scf7180000172775 99.55 True fake: scaffold gap size wrong estimation (local) 28829996 28836878 304756 297874 NC_000014.9 scf7180000172775 99.97 True fake: scaffold gap size wrong estimation (local) 28818687 28829611 316282 305038 NC_000014.9 scf7180000172775 96.41 True fake: scaffold gap size wrong estimation (local) 28804716 28818431 330355 316541 NC_000014.9 scf7180000172775 99.77 True fake: scaffold gap size wrong estimation (local) 28792581 28804505 342988 330579 NC_000014.9 scf7180000172775 96.29 True fake: scaffold gap size wrong estimation (local) 28791417 28792315 344111 343213 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28786569 28791264 348862 344198 NC_000014.9 scf7180000172775 98.91 True fake: scaffold gap size wrong estimation (local) 28767622 28786432 368081 349271 NC_000014.9 scf7180000172775 99.98 True fake: scaffold gap size wrong estimation (local) 28750937 28767403 384682 368272 NC_000014.9 scf7180000172775 99.63 True fake: scaffold gap size wrong estimation (local) 28745948 28750765 389617 384828 NC_000014.9 scf7180000172775 99.23 True fake: scaffold gap size wrong estimation (local) 28735560 28745638 399981 389890 NC_000014.9 scf7180000172775 99.85 True fake: scaffold gap size wrong estimation (local) 28717783 28735349 417677 400097 NC_000014.9 scf7180000172775 99.12 True fake: scaffold gap size wrong estimation (local) 28699515 28717520 435864 417927 NC_000014.9 scf7180000172775 99.01 True fake: scaffold gap size wrong estimation (local) 28696606 28699404 438796 435998 NC_000014.9 scf7180000172775 99.71 True fake: scaffold gap size wrong estimation (local) 28658074 28696368 476809 438985 NC_000014.9 scf7180000172775 98.48 True fake: not a misassembly (possible transposable element) 78434137 78435665 476810 478338 NC_000014.9 scf7180000172775 99.93 True fake: not a misassembly (possible transposable element) 28649568 28658128 487259 478699 NC_000014.9 scf7180000172775 99.89 True fake: scaffold gap size wrong estimation (local) 28642829 28649337 494038 487481 NC_000014.9 scf7180000172775 99.8 True fake: scaffold gap size wrong estimation (local) 28641506 28642225 495365 494646 NC_000014.9 scf7180000172775 99.58 True fake: scaffold gap size wrong estimation (local) 28639365 28639962 497148 496551 NC_000014.9 scf7180000172775 98.83 True fake: scaffold gap size wrong estimation (local) 28636174 28636761 500211 499624 NC_000014.9 scf7180000172775 99.32 True fake: scaffold gap size wrong estimation (local) 28632959 28635654 503411 500716 NC_000014.9 scf7180000172775 99.85 True fake: scaffold gap size wrong estimation (local) 28601990 28632762 534411 503536 NC_000014.9 scf7180000172775 99.18 True fake: scaffold gap size wrong estimation (local) 28593394 28601815 542921 534500 NC_000014.9 scf7180000172775 99.96 True fake: scaffold gap size wrong estimation (local) 28588768 28593153 547473 543088 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28587295 28588593 548814 547571 NC_000014.9 scf7180000172775 95.47 True fake: scaffold gap size wrong estimation (local) 28567457 28586946 568953 549122 NC_000014.9 scf7180000172775 98.22 True fake: scaffold gap size wrong estimation (local) 28546243 28567229 590446 569101 NC_000014.9 scf7180000172775 97.54 True fake: scaffold gap size wrong estimation (local) 28533974 28544433 602756 592025 NC_000014.9 scf7180000172775 96.66 True fake: not a misassembly (possible transposable element) 28981690 28982258 602757 603325 NC_000014.9 scf7180000172775 100.0 True fake: not a misassembly (possible transposable element) 28531944 28534003 605523 603464 NC_000014.9 scf7180000172775 99.51 True fake: scaffold gap size wrong estimation (local) 28529822 28531943 609246 607125 NC_000014.9 scf7180000172775 98.59 True fake: scaffold gap size wrong estimation (local) 28527068 28529489 612018 609597 NC_000014.9 scf7180000172775 99.83 True indel: indel (<= 5bp) 28526469 28527066 612616 612019 NC_000014.9 scf7180000172775 99.16 True indel: indel (<= 5bp) 28522151 28526060 616929 613020 NC_000014.9 scf7180000172775 99.85 True fake: scaffold gap size wrong estimation (local) 28518749 28521400 620273 617622 NC_000014.9 scf7180000172775 98.6 True indel: indel (> 5bp) 28511435 28518721 627560 620274 NC_000014.9 scf7180000172775 99.89 True indel: indel (<= 5bp) 28510796 28511434 628200 627562 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28509977 28510795 629121 628303 NC_000014.9 scf7180000172775 97.31 True fake: not a misassembly (possible transposable element) 80887773 80888327 629471 630025 NC_000014.9 scf7180000172775 99.46 True fake: not a misassembly (possible transposable element) 28496232 28506899 643416 632570 NC_000014.9 scf7180000172775 98.4 True fake: scaffold gap size wrong estimation (local) 28484915 28496013 654610 643566 NC_000014.9 scf7180000172775 99.49 True fake: scaffold gap size wrong estimation (local) 28481503 28484734 657988 654742 NC_000014.9 scf7180000172775 99.38 True fake: scaffold gap size wrong estimation (local) 28477752 28481403 661716 658065 NC_000014.9 scf7180000172775 99.84 True fake: scaffold gap size wrong estimation (local) 28476482 28477603 663316 662195 NC_000014.9 scf7180000172775 99.38 True fake: scaffold gap size wrong estimation (local) 28421090 28476344 719048 663464 NC_000014.9 scf7180000172775 99.53 True fake: scaffold gap size wrong estimation (local) 28415661 28420808 724367 719220 NC_000014.9 scf7180000172775 99.86 True fake: scaffold gap size wrong estimation (local) 28405025 28412931 738205 730382 NC_000014.9 scf7180000172775 98.8 True fake: scaffold gap size wrong estimation (local) 28402901 28404851 740386 738436 NC_000014.9 scf7180000172775 99.95 True fake: scaffold gap size wrong estimation (local) 28400650 28402039 742568 741179 NC_000014.9 scf7180000172775 99.35 True fake: scaffold gap size wrong estimation (local) 28394409 28400649 748820 742580 NC_000014.9 scf7180000172775 99.7 True indel: indel (<= 5bp) 28393804 28394408 749428 748824 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 28391851 28393803 751409 749457 NC_000014.9 scf7180000172775 99.8 True fake: scaffold gap size wrong estimation (local) 28380314 28391689 764580 753205 NC_000014.9 scf7180000172775 99.76 True indel: indel (> 5bp) 28379514 28380293 765360 764581 NC_000014.9 scf7180000172775 99.87 True indel: indel (> 5bp) 28376120 28379475 768716 765361 NC_000014.9 scf7180000172775 99.88 True fake: scaffold gap size wrong estimation (local) 28349625 28376045 795313 768758 NC_000014.9 scf7180000172775 98.96 True fake: scaffold gap size wrong estimation (local) 28337513 28349365 807317 795518 NC_000014.9 scf7180000172775 99.45 True fake: scaffold gap size wrong estimation (local) 28332366 28337366 812531 807449 NC_000014.9 scf7180000172775 99.84 True fake: scaffold gap size wrong estimation (local) 28318438 28330866 826268 813857 NC_000014.9 scf7180000172775 99.53 True fake: scaffold gap size wrong estimation (local) 28297148 28312500 849154 833416 NC_000014.9 scf7180000172775 97.59 True fake: not a misassembly (possible transposable element) 82466561 82467637 849159 850235 NC_000014.9 scf7180000172775 100.0 True fake: not a misassembly (possible transposable element) 28278111 28296901 869053 850256 NC_000014.9 scf7180000172775 99.87 True fake: scaffold gap size wrong estimation (local) 28273186 28277852 873895 869229 NC_000014.9 scf7180000172775 99.94 True fake: scaffold gap size wrong estimation (local) 28266815 28272935 880202 874057 NC_000014.9 scf7180000172775 99.74 True fake: not a misassembly (possible transposable element) 21171890 21172468 880956 880378 NC_000014.9 scf7180000172775 100.0 True fake: not a misassembly (possible transposable element) 28254254 28266898 893602 880957 NC_000014.9 scf7180000172775 99.89 True fake: not a misassembly (possible transposable element) 63451316 63453001 895338 893653 NC_000014.9 scf7180000172775 100.0 True fake: not a misassembly (possible transposable element) 28251991 28254026 897634 895599 NC_000014.9 scf7180000172775 99.8 True fake: scaffold gap size wrong estimation (local) 28249540 28251495 899924 897969 NC_000014.9 scf7180000172775 99.69 True relocation, scaffold gap is present, inconsistency = 24732679 52984264 52988956 900014 904712 NC_000014.9 scf7180000172775 99.62 True fake: scaffold gap size wrong estimation (local) 52989153 52989922 904882 905651 NC_000014.9 scf7180000172775 99.74 True fake: scaffold gap size wrong estimation (local) 52990275 52991901 906379 908005 NC_000014.9 scf7180000172775 99.69 True fake: scaffold gap size wrong estimation (local) 52992564 52994815 908878 911129 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 52994816 52999284 912621 917089 NC_000014.9 scf7180000172775 99.89 True indel: indel (> 5bp) 52999333 53000418 917090 918175 NC_000014.9 scf7180000172775 97.97 True fake: scaffold gap size wrong estimation (local) 53000769 53003315 918527 921073 NC_000014.9 scf7180000172775 99.76 True fake: scaffold gap size wrong estimation (local) 53003505 53013067 921288 931098 NC_000014.9 scf7180000172775 96.41 True fake: scaffold gap size wrong estimation (local) 53013602 53016137 931605 934117 NC_000014.9 scf7180000172775 98.92 True fake: scaffold gap size wrong estimation (local) 53016379 53018204 934301 936126 NC_000014.9 scf7180000172775 99.67 True fake: scaffold gap size wrong estimation (local) 53018356 53024775 936253 942632 NC_000014.9 scf7180000172775 99.12 True fake: scaffold gap size wrong estimation (local) 53024968 53027708 942793 945564 NC_000014.9 scf7180000172775 99.89 True fake: scaffold gap size wrong estimation (local) 53028339 53048355 946168 966183 NC_000014.9 scf7180000172775 99.88 True fake: scaffold gap size wrong estimation (local) 53048578 53059296 966337 977154 NC_000014.9 scf7180000172775 99.22 True fake: scaffold gap size wrong estimation (local) 53059882 53082444 977749 1000291 NC_000014.9 scf7180000172775 99.01 True fake: scaffold gap size wrong estimation (local) 53082553 53086179 1000367 1004015 NC_000014.9 scf7180000172775 99.27 True fake: scaffold gap size wrong estimation (local) 53087623 53088786 1005382 1006545 NC_000014.9 scf7180000172775 99.66 True fake: scaffold gap size wrong estimation (local) 53090410 53093920 1008096 1011606 NC_000014.9 scf7180000172775 99.94 True fake: scaffold gap size wrong estimation (local) 53094176 53107680 1011850 1025221 NC_000014.9 scf7180000172775 98.67 True fake: scaffold gap size wrong estimation (local) 53107864 53112423 1025309 1029860 NC_000014.9 scf7180000172775 99.6 True relocation, scaffold gap is present, inconsistency = 5471180 58583639 58585338 1031595 1029896 NC_000014.9 scf7180000172775 99.88 True fake: scaffold gap size wrong estimation (local) 58580222 58580847 1034390 1033765 NC_000014.9 scf7180000172775 99.36 True fake: scaffold gap size wrong estimation (local) 58579009 58579913 1035673 1034769 NC_000014.9 scf7180000172775 97.79 True indel: indel (> 5bp) 58576915 58578927 1037686 1035674 NC_000014.9 scf7180000172775 99.9 True fake: scaffold gap size wrong estimation (local) 58573368 58576914 1043488 1039942 NC_000014.9 scf7180000172775 99.86 True fake: scaffold gap size wrong estimation (local) 58567643 58573171 1049064 1043636 NC_000014.9 scf7180000172775 98.01 True fake: scaffold gap size wrong estimation (local) 58560142 58567591 1056961 1049646 NC_000014.9 scf7180000172775 98.15 True fake: scaffold gap size wrong estimation (local) 58551213 58559981 1065651 1057059 NC_000014.9 scf7180000172775 97.57 True fake: scaffold gap size wrong estimation (local) 58550268 58550831 1066629 1066066 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58543135 58550122 1073802 1066801 NC_000014.9 scf7180000172775 99.94 True fake: scaffold gap size wrong estimation (local) 58537920 58542888 1078940 1074009 NC_000014.9 scf7180000172775 99.19 True fake: scaffold gap size wrong estimation (local) 58532096 58537765 1084797 1079128 NC_000014.9 scf7180000172775 99.91 True fake: scaffold gap size wrong estimation (local) 58528628 58530438 1088101 1086300 NC_000014.9 scf7180000172775 97.46 True indel: indel (<= 5bp) 58510270 58528187 1106589 1088541 NC_000014.9 scf7180000172775 99.43 True fake: scaffold gap size wrong estimation (local) 58507934 58510115 1108884 1106703 NC_000014.9 scf7180000172775 98.99 True fake: scaffold gap size wrong estimation (local) 58502386 58506638 1114692 1110440 NC_000014.9 scf7180000172775 99.81 True fake: scaffold gap size wrong estimation (local) 58500713 58502148 1116421 1114982 NC_000014.9 scf7180000172775 99.72 True fake: scaffold gap size wrong estimation (local) 58499825 58500515 1117234 1116544 NC_000014.9 scf7180000172775 99.86 True fake: scaffold gap size wrong estimation (local) 58498093 58499428 1119116 1117692 NC_000014.9 scf7180000172775 95.99 True fake: scaffold gap size wrong estimation (local) 58487557 58496958 1129580 1120154 NC_000014.9 scf7180000172775 99.84 True fake: scaffold gap size wrong estimation (local) 58485139 58486432 1131949 1130656 NC_000014.9 scf7180000172775 99.92 True fake: scaffold gap size wrong estimation (local) 58482267 58484866 1134919 1132322 NC_000014.9 scf7180000172775 99.85 True fake: scaffold gap size wrong estimation (local) 58478385 58481862 1138734 1135259 NC_000014.9 scf7180000172775 99.77 True fake: scaffold gap size wrong estimation (local) 58473886 58478103 1143205 1138952 NC_000014.9 scf7180000172775 99.5 True fake: scaffold gap size wrong estimation (local) 58471016 58473651 1146087 1143454 NC_000014.9 scf7180000172775 99.7 True fake: scaffold gap size wrong estimation (local) 58464994 58470931 1152281 1146360 NC_000014.9 scf7180000172775 99.63 True fake: not a misassembly (possible transposable element) 40184435 40185987 1152282 1153834 NC_000014.9 scf7180000172775 99.62 True fake: not a misassembly (possible transposable element) 58463751 58465008 1155170 1153911 NC_000014.9 scf7180000172775 99.6 True fake: scaffold gap size wrong estimation (local) 58462364 58463617 1156515 1155233 NC_000014.9 scf7180000172775 98.06 True fake: scaffold gap size wrong estimation (local) 58451907 58462263 1167156 1156787 NC_000014.9 scf7180000172775 99.68 True fake: scaffold gap size wrong estimation (local) 58446298 58451379 1172869 1167730 NC_000014.9 scf7180000172775 96.43 True fake: scaffold gap size wrong estimation (local) 58444933 58445609 1174174 1173499 NC_000014.9 scf7180000172775 99.7 True fake: scaffold gap size wrong estimation (local) 58443673 58444600 1175423 1174496 NC_000014.9 scf7180000172775 97.63 True fake: scaffold gap size wrong estimation (local) 58442285 58443437 1177064 1175912 NC_000014.9 scf7180000172775 99.83 True fake: scaffold gap size wrong estimation (local) 58441359 58442167 1177975 1177167 NC_000014.9 scf7180000172775 99.38 True fake: scaffold gap size wrong estimation (local) 58440562 58441107 1178962 1178417 NC_000014.9 scf7180000172775 96.34 True fake: scaffold gap size wrong estimation (local) 58439460 58440049 1179923 1179334 NC_000014.9 scf7180000172775 99.83 True fake: scaffold gap size wrong estimation (local) 58435957 58437711 1183053 1181299 NC_000014.9 scf7180000172775 99.94 True fake: scaffold gap size wrong estimation (local) 58426473 58435755 1192717 1183556 NC_000014.9 scf7180000172775 98.5 True fake: scaffold gap size wrong estimation (local) 58425335 58425930 1193639 1193044 NC_000014.9 scf7180000172775 99.66 True fake: scaffold gap size wrong estimation (local) 58423539 58425300 1195972 1194209 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58422386 58423291 1197116 1196203 NC_000014.9 scf7180000172775 99.89 True fake: scaffold gap size wrong estimation (local) 58420861 58422014 1198590 1197437 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58417512 58420579 1201879 1198842 NC_000014.9 scf7180000172775 98.89 True fake: scaffold gap size wrong estimation (local) 58416109 58417203 1203083 1201989 NC_000014.9 scf7180000172775 99.82 True fake: scaffold gap size wrong estimation (local) 58414752 58416054 1204805 1203503 NC_000014.9 scf7180000172775 99.77 True fake: scaffold gap size wrong estimation (local) 58412874 58413748 1206566 1205692 NC_000014.9 scf7180000172775 99.89 True fake: scaffold gap size wrong estimation (local) 58409850 58412865 1209607 1206732 NC_000014.9 scf7180000172775 95.13 True fake: scaffold gap size wrong estimation (local) 58408425 58409698 1211041 1209768 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58405211 58408161 1214196 1211246 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58404404 58405071 1215027 1214344 NC_000014.9 scf7180000172775 99.85 True fake: scaffold gap size wrong estimation (local) 58402560 58403588 1216785 1215757 NC_000014.9 scf7180000172775 99.71 True fake: scaffold gap size wrong estimation (local) 58401614 58402391 1217783 1217006 NC_000014.9 scf7180000172775 99.87 True fake: scaffold gap size wrong estimation (local) 58394934 58399900 1224369 1219422 NC_000014.9 scf7180000172775 99.54 True fake: scaffold gap size wrong estimation (local) 58392519 58393219 1226663 1225963 NC_000014.9 scf7180000172775 100.0 True local misassembly 58393292 58394169 1227620 1226743 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58390734 58391901 1230051 1228884 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58388160 58389240 1232512 1231432 NC_000014.9 scf7180000172775 98.06 True fake: scaffold gap size wrong estimation (local) 58386348 58387309 1234333 1233372 NC_000014.9 scf7180000172775 99.9 True fake: scaffold gap size wrong estimation (local) 58384856 58385968 1235670 1234558 NC_000014.9 scf7180000172775 99.91 True indel: indel (<= 5bp) 58383126 58384854 1237399 1235671 NC_000014.9 scf7180000172775 98.67 True fake: scaffold gap size wrong estimation (local) 58381503 58382675 1238773 1237601 NC_000014.9 scf7180000172775 99.91 True fake: scaffold gap size wrong estimation (local) 58380336 58381367 1240722 1239691 NC_000014.9 scf7180000172775 98.06 True fake: scaffold gap size wrong estimation (local) 58378086 58378715 1242148 1241519 NC_000014.9 scf7180000172775 99.84 True fake: scaffold gap size wrong estimation (local) 58375450 58377997 1244795 1242243 NC_000014.9 scf7180000172775 99.88 True fake: scaffold gap size wrong estimation (local) 58363685 58374289 1256447 1245872 NC_000014.9 scf7180000172775 99.57 True fake: scaffold gap size wrong estimation (local) 58360056 58363451 1260001 1256606 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58356973 58359812 1263126 1260259 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58350118 58356711 1269965 1263342 NC_000014.9 scf7180000172775 99.82 True fake: scaffold gap size wrong estimation (local) 58346970 58349855 1273034 1270111 NC_000014.9 scf7180000172775 99.79 True fake: scaffold gap size wrong estimation (local) 58340758 58346826 1279133 1273131 NC_000014.9 scf7180000172775 98.58 True fake: scaffold gap size wrong estimation (local) 58337257 58340259 1282616 1279646 NC_000014.9 scf7180000172775 98.86 True fake: scaffold gap size wrong estimation (local) 58335528 58337108 1284372 1282789 NC_000014.9 scf7180000172775 99.75 True fake: scaffold gap size wrong estimation (local) 58328993 58335328 1290885 1284536 NC_000014.9 scf7180000172775 99.81 True indel: stretch of mismatches 58326410 58328929 1293468 1290949 NC_000014.9 scf7180000172775 99.96 True fake: scaffold gap size wrong estimation (local) 58324117 58326188 1295751 1293680 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58322989 58323902 1296837 1295924 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58322132 58322762 1297774 1297144 NC_000014.9 scf7180000172775 99.84 True fake: scaffold gap size wrong estimation (local) 58320875 58321947 1298926 1297854 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58317644 58319120 1302098 1300622 NC_000014.9 scf7180000172775 99.86 True fake: scaffold gap size wrong estimation (local) 58315053 58316724 1304637 1302966 NC_000014.9 scf7180000172775 99.88 True fake: scaffold gap size wrong estimation (local) 58312221 58315052 1308815 1305984 NC_000014.9 scf7180000172775 99.79 True fake: scaffold gap size wrong estimation (local) 58311208 58312176 1310738 1309770 NC_000014.9 scf7180000172775 100.0 True fake: scaffold gap size wrong estimation (local) 58302552 58311075 1319436 1310839 NC_000014.9 scf7180000172775 97.1 True fake: scaffold gap size wrong estimation (local) 58293748 58302172 1328111 1319760 NC_000014.9 scf7180000172775 98.37 True fake: scaffold gap size wrong estimation (local) 58291344 58293147 1330553 1328743 NC_000014.9 scf7180000172775 99.5 True fake: scaffold gap size wrong estimation (local) 58286539 58290776 1335475 1331227 NC_000014.9 scf7180000172775 99.69 True fake: scaffold gap size wrong estimation (local) 58280346 58286288 1341599 1335616 NC_000014.9 scf7180000172775 99.66 True fake: scaffold gap size wrong estimation (local) 58277922 58280182 1344085 1341852 NC_000014.9 scf7180000172775 98.57 True fake: scaffold gap size wrong estimation (local) 58274025 58277838 1347950 1344254 NC_000014.9 scf7180000172775 96.65 True fake: scaffold gap size wrong estimation (local) 58273038 58273636 1348973 1348375 NC_000014.9 scf7180000172775 100.0 True CONTIG scf7180000172775 1349033 misassembled 55435554 55437385 1 1834 NC_000014.9 scf7180000172776 99.89 True relocation, inconsistency = -32314636 23122750 23124720 1835 3805 NC_000014.9 scf7180000172776 99.75 True relocation, scaffold gap is present, inconsistency = 29061544 52186992 52187737 5278 4533 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 52181186 52185580 11410 6846 NC_000014.9 scf7180000172776 98.31 True fake: scaffold gap size wrong estimation (local) 52174957 52180872 17802 11631 NC_000014.9 scf7180000172776 98.54 True fake: scaffold gap size wrong estimation (local) 52172273 52174084 20409 18590 NC_000014.9 scf7180000172776 99.28 True fake: scaffold gap size wrong estimation (local) 52170848 52171937 21845 20756 NC_000014.9 scf7180000172776 99.54 True relocation, scaffold gap is present, inconsistency = -51069008 103238674 103239445 23027 22256 NC_000014.9 scf7180000172776 99.74 True fake: scaffold gap size wrong estimation (local) 103223752 103237693 38338 24399 NC_000014.9 scf7180000172776 99.73 True fake: scaffold gap size wrong estimation (local) 103214212 103223397 47762 38677 NC_000014.9 scf7180000172776 98.42 True fake: scaffold gap size wrong estimation (local) 103212087 103213975 49949 48061 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103208365 103210648 53561 51278 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103203490 103208195 58500 53778 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103200493 103203325 61495 58663 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103197210 103199439 64674 62445 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 103195824 103197109 66109 64804 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 103194281 103195641 67660 66319 NC_000014.9 scf7180000172776 98.58 True fake: scaffold gap size wrong estimation (local) 103193468 103194069 68503 67902 NC_000014.9 scf7180000172776 99.67 True fake: scaffold gap size wrong estimation (local) 103191929 103193250 69987 68666 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103184966 103191817 76967 70126 NC_000014.9 scf7180000172776 98.84 True fake: scaffold gap size wrong estimation (local) 103181158 103184694 80684 77148 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 103178282 103180962 83638 80950 NC_000014.9 scf7180000172776 99.52 True fake: scaffold gap size wrong estimation (local) 103167936 103178157 94055 83806 NC_000014.9 scf7180000172776 99.7 True fake: scaffold gap size wrong estimation (local) 103159908 103167729 101914 94251 NC_000014.9 scf7180000172776 97.89 True fake: scaffold gap size wrong estimation (local) 103158567 103159235 103580 102912 NC_000014.9 scf7180000172776 100.0 True indel: indel (<= 5bp) 103155650 103158566 106498 103582 NC_000014.9 scf7180000172776 99.79 True local misassembly 103154433 103155487 107553 106499 NC_000014.9 scf7180000172776 99.81 True fake: scaffold gap size wrong estimation (local) 103152913 103154165 109127 107931 NC_000014.9 scf7180000172776 95.13 True fake: scaffold gap size wrong estimation (local) 103150633 103152087 111295 109843 NC_000014.9 scf7180000172776 99.79 True fake: scaffold gap size wrong estimation (local) 103149276 103150479 112660 111457 NC_000014.9 scf7180000172776 99.67 True fake: scaffold gap size wrong estimation (local) 103147597 103148188 114144 113553 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103145588 103147417 116406 114577 NC_000014.9 scf7180000172776 99.67 True fake: scaffold gap size wrong estimation (local) 103119443 103144762 142580 117338 NC_000014.9 scf7180000172776 99.18 True fake: not a misassembly (possible transposable element) 42203888 42204668 143381 142601 NC_000014.9 scf7180000172776 100.0 True fake: not a misassembly (possible transposable element) 103118099 103119395 144698 143402 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103115745 103116555 146947 146137 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103103362 103117056 160951 147842 NC_000014.9 scf7180000172776 95.56 True fake: scaffold gap size wrong estimation (local) 103101326 103103244 163063 161145 NC_000014.9 scf7180000172776 99.84 True fake: scaffold gap size wrong estimation (local) 103088968 103100903 175301 163434 NC_000014.9 scf7180000172776 99.16 True fake: scaffold gap size wrong estimation (local) 103083852 103088789 180457 175496 NC_000014.9 scf7180000172776 99.65 True fake: scaffold gap size wrong estimation (local) 103077856 103081522 186097 182517 NC_000014.9 scf7180000172776 96.7 True fake: scaffold gap size wrong estimation (local) 103077070 103077569 187063 186564 NC_000014.9 scf7180000172776 99.6 True fake: scaffold gap size wrong estimation (local) 103069635 103076105 194448 187998 NC_000014.9 scf7180000172776 99.57 True fake: scaffold gap size wrong estimation (local) 103064922 103069431 199347 194706 NC_000014.9 scf7180000172776 95.64 True fake: scaffold gap size wrong estimation (local) 103062761 103064106 201479 200134 NC_000014.9 scf7180000172776 99.93 True local misassembly 103061303 103062538 202715 201480 NC_000014.9 scf7180000172776 99.35 True local misassembly 103059002 103060950 204688 202740 NC_000014.9 scf7180000172776 99.95 True indel: indel (> 5bp) 103057793 103059001 205903 204695 NC_000014.9 scf7180000172776 99.67 True fake: scaffold gap size wrong estimation (local) 103053879 103057462 209785 206203 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 103049973 103053130 213613 210441 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 103048834 103049829 214802 213807 NC_000014.9 scf7180000172776 99.9 True fake: scaffold gap size wrong estimation (local) 103046913 103047740 216806 215825 NC_000014.9 scf7180000172776 99.74 True local misassembly 103044734 103046778 218847 216807 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 103042571 103044371 221013 219213 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103040726 103042233 222932 221425 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103038346 103040100 225375 223602 NC_000014.9 scf7180000172776 99.59 True fake: scaffold gap size wrong estimation (local) 103036428 103037775 227360 226013 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103033488 103034634 230305 229159 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103029882 103032539 233946 231289 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103026881 103029326 236827 234479 NC_000014.9 scf7180000172776 95.84 True fake: scaffold gap size wrong estimation (local) 103023310 103025705 240566 238152 NC_000014.9 scf7180000172776 99.96 True fake: scaffold gap size wrong estimation (local) 103021533 103023081 242300 240754 NC_000014.9 scf7180000172776 99.81 True fake: scaffold gap size wrong estimation (local) 103015989 103021255 247781 242552 NC_000014.9 scf7180000172776 99.24 True fake: scaffold gap size wrong estimation (local) 103014170 103015798 249576 247948 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 103005834 103013947 257927 249812 NC_000014.9 scf7180000172776 98.58 True fake: scaffold gap size wrong estimation (local) 102998027 103004920 265447 258757 NC_000014.9 scf7180000172776 96.79 True fake: scaffold gap size wrong estimation (local) 102996277 102997907 267431 265793 NC_000014.9 scf7180000172776 98.94 True fake: scaffold gap size wrong estimation (local) 102993076 102996109 270602 267568 NC_000014.9 scf7180000172776 99.6 True fake: scaffold gap size wrong estimation (local) 102989878 102992841 273732 270752 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 102977352 102989772 286089 273823 NC_000014.9 scf7180000172776 96.25 True fake: scaffold gap size wrong estimation (local) 102975440 102977223 288056 286273 NC_000014.9 scf7180000172776 98.71 True fake: scaffold gap size wrong estimation (local) 102972733 102974718 290792 288805 NC_000014.9 scf7180000172776 99.8 True fake: scaffold gap size wrong estimation (local) 102968002 102972450 295453 291005 NC_000014.9 scf7180000172776 99.96 True fake: scaffold gap size wrong estimation (local) 102966668 102967862 296773 295579 NC_000014.9 scf7180000172776 99.5 True fake: scaffold gap size wrong estimation (local) 102965719 102966667 297737 296789 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 102961694 102965109 301851 298435 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 102959298 102959839 302818 302277 NC_000014.9 scf7180000172776 100.0 True local misassembly 102960159 102961422 304124 302869 NC_000014.9 scf7180000172776 99.21 True fake: scaffold gap size wrong estimation (local) 102957197 102958869 306447 304775 NC_000014.9 scf7180000172776 98.74 True fake: scaffold gap size wrong estimation (local) 102948470 102956575 315144 307041 NC_000014.9 scf7180000172776 99.85 True fake: scaffold gap size wrong estimation (local) 102946316 102948191 317303 315428 NC_000014.9 scf7180000172776 99.95 True fake: scaffold gap size wrong estimation (local) 102939213 102946060 324347 317504 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 102934932 102938715 328643 324794 NC_000014.9 scf7180000172776 99.84 True fake: scaffold gap size wrong estimation (local) 102932875 102934221 330583 329237 NC_000014.9 scf7180000172776 99.26 True fake: scaffold gap size wrong estimation (local) 102930258 102932874 333264 330648 NC_000014.9 scf7180000172776 99.85 True indel: indel (> 5bp) 102927031 102930257 336502 333276 NC_000014.9 scf7180000172776 99.54 True fake: scaffold gap size wrong estimation (local) 102924349 102926603 340229 337975 NC_000014.9 scf7180000172776 99.82 True indel: indel (<= 5bp) 102921999 102924347 342578 340230 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 102905030 102919160 359552 345428 NC_000014.9 scf7180000172776 99.85 True fake: scaffold gap size wrong estimation (local) 102900410 102904552 364122 359980 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 102893393 102899935 371074 364552 NC_000014.9 scf7180000172776 99.64 True fake: scaffold gap size wrong estimation (local) 102884784 102893194 379694 371311 NC_000014.9 scf7180000172776 99.22 True fake: scaffold gap size wrong estimation (local) 102881397 102884562 383049 379884 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 102877846 102880989 386668 383525 NC_000014.9 scf7180000172776 99.9 True local misassembly 102874623 102876673 389176 387126 NC_000014.9 scf7180000172776 99.85 True fake: scaffold gap size wrong estimation (local) 102872963 102874359 390788 389391 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 102869794 102872743 394037 391088 NC_000014.9 scf7180000172776 99.97 True fake: scaffold gap size wrong estimation (local) 102865705 102869557 397954 394224 NC_000014.9 scf7180000172776 96.51 True fake: scaffold gap size wrong estimation (local) 102864419 102865601 399294 398112 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 102861065 102864161 402657 399551 NC_000014.9 scf7180000172776 99.74 True fake: not a misassembly (possible transposable element) 66790754 66791617 403545 402682 NC_000014.9 scf7180000172776 100.0 True fake: not a misassembly (possible transposable element) 102858420 102861090 406215 403546 NC_000014.9 scf7180000172776 99.81 True fake: scaffold gap size wrong estimation (local) 102856204 102858168 408427 406463 NC_000014.9 scf7180000172776 99.9 True fake: scaffold gap size wrong estimation (local) 102853894 102855540 410803 409158 NC_000014.9 scf7180000172776 99.82 True fake: scaffold gap size wrong estimation (local) 102852071 102852875 412652 411848 NC_000014.9 scf7180000172776 99.88 True fake: scaffold gap size wrong estimation (local) 102850695 102851496 413962 413161 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 102845790 102850513 418858 414134 NC_000014.9 scf7180000172776 99.72 True fake: scaffold gap size wrong estimation (local) 102843184 102845144 421496 419552 NC_000014.9 scf7180000172776 98.71 True fake: scaffold gap size wrong estimation (local) 102839500 102842995 425100 421590 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 102834699 102839311 429797 425195 NC_000014.9 scf7180000172776 99.63 True fake: scaffold gap size wrong estimation (local) 102832568 102834462 431832 429962 NC_000014.9 scf7180000172776 98.55 True fake: scaffold gap size wrong estimation (local) 102822997 102832418 441404 431983 NC_000014.9 scf7180000172776 99.95 True fake: scaffold gap size wrong estimation (local) 102822015 102822853 442356 441518 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 102813245 102821810 451295 442524 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 102811940 102812663 452382 451659 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 102809790 102811758 454511 452533 NC_000014.9 scf7180000172776 98.73 True fake: scaffold gap size wrong estimation (local) 102802923 102808921 461469 455369 NC_000014.9 scf7180000172776 99.32 True fake: scaffold gap size wrong estimation (local) 102801060 102801800 463268 462528 NC_000014.9 scf7180000172776 99.6 True fake: scaffold gap size wrong estimation (local) 102796141 102800921 468188 463447 NC_000014.9 scf7180000172776 97.25 True indel: stretch of mismatches 102791281 102795977 473096 468352 NC_000014.9 scf7180000172776 99.4 True fake: scaffold gap size wrong estimation (local) 102788675 102791041 475697 473328 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 102787547 102788573 476800 475752 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 102784431 102787437 480021 477023 NC_000014.9 scf7180000172776 99.6 True fake: scaffold gap size wrong estimation (local) 102782499 102784223 481974 480250 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 102780521 102781771 484066 482816 NC_000014.9 scf7180000172776 99.84 True indel: indel (<= 5bp) 102779271 102780519 485315 484067 NC_000014.9 scf7180000172776 98.4 True indel: indel (<= 5bp) 102777827 102779270 486760 485317 NC_000014.9 scf7180000172776 98.55 True local misassembly 102775595 102776781 488310 487124 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 102774480 102775594 489638 488524 NC_000014.9 scf7180000172776 99.64 True fake: scaffold gap size wrong estimation (local) 102773225 102773908 490444 489761 NC_000014.9 scf7180000172776 99.71 True relocation, scaffold gap is present, inconsistency = 29466079 73305028 73307103 490487 492562 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 73307985 73309294 493456 494765 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73309460 73311178 494877 496601 NC_000014.9 scf7180000172776 99.59 True fake: scaffold gap size wrong estimation (local) 73311326 73312199 496712 497585 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73313148 73313675 498512 499039 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73313884 73326397 499291 511811 NC_000014.9 scf7180000172776 99.27 True fake: scaffold gap size wrong estimation (local) 73326479 73327347 511998 512866 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73328277 73329002 513598 514323 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73329128 73349468 514516 535227 NC_000014.9 scf7180000172776 95.95 True fake: scaffold gap size wrong estimation (local) 73350446 73351247 536139 536961 NC_000014.9 scf7180000172776 99.88 True fake: scaffold gap size wrong estimation (local) 73352760 73354265 538345 539884 NC_000014.9 scf7180000172776 97.6 True fake: scaffold gap size wrong estimation (local) 73354831 73356904 540476 542544 NC_000014.9 scf7180000172776 99.42 True fake: scaffold gap size wrong estimation (local) 73357900 73369057 543509 554653 NC_000014.9 scf7180000172776 98.68 True fake: scaffold gap size wrong estimation (local) 73369316 73370497 554976 556157 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 73372391 73374059 558106 559787 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 73374883 73382187 560601 567835 NC_000014.9 scf7180000172776 98.85 True fake: scaffold gap size wrong estimation (local) 73382391 73383784 568051 569483 NC_000014.9 scf7180000172776 97.17 True fake: scaffold gap size wrong estimation (local) 73384323 73384820 569871 570372 NC_000014.9 scf7180000172776 98.8 True fake: scaffold gap size wrong estimation (local) 73385701 73386878 571208 572385 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73387772 73388841 573646 574715 NC_000014.9 scf7180000172776 99.81 True fake: scaffold gap size wrong estimation (local) 73390919 73399820 576456 585545 NC_000014.9 scf7180000172776 96.33 True fake: scaffold gap size wrong estimation (local) 73399996 73401591 585653 587248 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 73401800 73403894 587444 589538 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 73404278 73406087 589880 591747 NC_000014.9 scf7180000172776 99.61 True fake: scaffold gap size wrong estimation (local) 73406916 73407971 592625 593680 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 73408888 73411939 594509 597559 NC_000014.9 scf7180000172776 99.64 True fake: scaffold gap size wrong estimation (local) 73414169 73414741 599783 600355 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73414897 73418576 600505 604097 NC_000014.9 scf7180000172776 97.28 True fake: scaffold gap size wrong estimation (local) 73418676 73419254 604416 604994 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 73420109 73421206 605700 606797 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 73421381 73423331 607019 609024 NC_000014.9 scf7180000172776 97.99 True fake: scaffold gap size wrong estimation (local) 73423970 73425826 609665 611521 NC_000014.9 scf7180000172776 99.89 True fake: scaffold gap size wrong estimation (local) 73431715 73432959 616772 618016 NC_000014.9 scf7180000172776 100.0 True local misassembly 73433315 73433931 618017 618633 NC_000014.9 scf7180000172776 96.6 True indel: indel (<= 5bp) 73433934 73435273 618634 619973 NC_000014.9 scf7180000172776 98.51 True fake: scaffold gap size wrong estimation (local) 73437175 73438634 621704 623163 NC_000014.9 scf7180000172776 99.66 True fake: scaffold gap size wrong estimation (local) 73440940 73441724 625172 625956 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73444856 73445366 629223 629733 NC_000014.9 scf7180000172776 99.61 True fake: scaffold gap size wrong estimation (local) 73445367 73446014 630001 630648 NC_000014.9 scf7180000172776 98.61 True fake: scaffold gap size wrong estimation (local) 73447370 73449708 631789 634127 NC_000014.9 scf7180000172776 99.7 True fake: scaffold gap size wrong estimation (local) 73449910 73450542 634747 635379 NC_000014.9 scf7180000172776 99.84 True fake: scaffold gap size wrong estimation (local) 73451439 73452283 635949 636793 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73452413 73453238 637005 637830 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73453839 73456229 638300 640690 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 73456379 73464294 640793 648737 NC_000014.9 scf7180000172776 99.25 True fake: scaffold gap size wrong estimation (local) 73464486 73465434 648976 649924 NC_000014.9 scf7180000172776 99.79 True fake: scaffold gap size wrong estimation (local) 73465633 73470826 650084 655257 NC_000014.9 scf7180000172776 99.5 True fake: scaffold gap size wrong estimation (local) 73471350 73473604 655739 658031 NC_000014.9 scf7180000172776 98.42 True fake: scaffold gap size wrong estimation (local) 73474780 73477028 659301 661530 NC_000014.9 scf7180000172776 99.06 True fake: scaffold gap size wrong estimation (local) 73477373 73479151 662161 663947 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73479850 73480851 664790 665767 NC_000014.9 scf7180000172776 97.35 True fake: scaffold gap size wrong estimation (local) 73481839 73482693 666317 667466 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73482892 73484546 667685 669344 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73484864 73486440 669667 671230 NC_000014.9 scf7180000172776 97.05 True fake: scaffold gap size wrong estimation (local) 73487452 73488700 672402 673650 NC_000014.9 scf7180000172776 99.84 True local misassembly 73488914 73490307 673651 675044 NC_000014.9 scf7180000172776 98.35 True fake: scaffold gap size wrong estimation (local) 73490573 73495873 675328 680753 NC_000014.9 scf7180000172776 98.21 True fake: scaffold gap size wrong estimation (local) 73497879 73499293 682553 683967 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73499294 73499976 684093 684775 NC_000014.9 scf7180000172776 95.9 True local misassembly 73500276 73501222 684776 685722 NC_000014.9 scf7180000172776 97.47 True fake: scaffold gap size wrong estimation (local) 73502718 73504093 686754 688129 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73506020 73506814 688667 689461 NC_000014.9 scf7180000172776 99.75 True fake: scaffold gap size wrong estimation (local) 73508778 73509809 691532 692563 NC_000014.9 scf7180000172776 99.9 True local misassembly 73510620 73511250 692564 693194 NC_000014.9 scf7180000172776 96.83 True local misassembly 73511613 73513259 693195 694841 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73513748 73514871 695333 696456 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73516161 73517668 697423 698930 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 73518359 73524034 699621 705296 NC_000014.9 scf7180000172776 99.33 True local misassembly 73524309 73525777 705297 706765 NC_000014.9 scf7180000172776 98.64 True fake: scaffold gap size wrong estimation (local) 73525956 73527546 708705 710295 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 73528407 73529118 711268 711984 NC_000014.9 scf7180000172776 98.74 True fake: scaffold gap size wrong estimation (local) 73529379 73530197 712177 712997 NC_000014.9 scf7180000172776 99.76 True fake: scaffold gap size wrong estimation (local) 73530879 73531419 713393 713933 NC_000014.9 scf7180000172776 99.26 True fake: scaffold gap size wrong estimation (local) 73532007 73532825 714528 715346 NC_000014.9 scf7180000172776 98.53 True relocation, scaffold gap is present, inconsistency = 29840 73564743 73566166 717424 718860 NC_000014.9 scf7180000172776 99.65 True fake: scaffold gap size wrong estimation (local) 73567429 73569241 720079 721890 NC_000014.9 scf7180000172776 99.78 True fake: scaffold gap size wrong estimation (local) 73569795 73570335 722695 723235 NC_000014.9 scf7180000172776 99.45 True fake: scaffold gap size wrong estimation (local) 73571005 73572641 723502 725147 NC_000014.9 scf7180000172776 98.61 True fake: scaffold gap size wrong estimation (local) 73572918 73574048 725662 726800 NC_000014.9 scf7180000172776 98.86 True fake: scaffold gap size wrong estimation (local) 73574322 73576622 727065 729265 NC_000014.9 scf7180000172776 95.4 True fake: scaffold gap size wrong estimation (local) 73576947 73577970 729475 730498 NC_000014.9 scf7180000172776 99.51 True fake: scaffold gap size wrong estimation (local) 73579599 73583061 733109 736565 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 73583882 73585825 737405 739385 NC_000014.9 scf7180000172776 98.83 True fake: scaffold gap size wrong estimation (local) 73587439 73588032 740142 740735 NC_000014.9 scf7180000172776 99.49 True fake: not a misassembly (possible transposable element) 73554251 73555751 740786 742286 NC_000014.9 scf7180000172776 99.93 True fake: not a misassembly (possible transposable element) 73588088 73589995 743071 744978 NC_000014.9 scf7180000172776 99.9 True fake: scaffold gap size wrong estimation (local) 73590849 73596649 746099 751908 NC_000014.9 scf7180000172776 98.91 True fake: scaffold gap size wrong estimation (local) 73598391 73600633 753529 755771 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 73602189 73602845 757349 758005 NC_000014.9 scf7180000172776 96.96 True fake: scaffold gap size wrong estimation (local) 73603082 73603585 758126 758629 NC_000014.9 scf7180000172776 99.6 True fake: scaffold gap size wrong estimation (local) 73604687 73605557 760301 761171 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73606459 73607102 761253 761895 NC_000014.9 scf7180000172776 99.53 True fake: scaffold gap size wrong estimation (local) 73608194 73609725 763019 764550 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 73610475 73612089 765422 767036 NC_000014.9 scf7180000172776 98.7 True indel: indel (> 5bp) 73612096 73612621 767037 767562 NC_000014.9 scf7180000172776 96.01 True fake: scaffold gap size wrong estimation (local) 73612752 73613938 767810 768996 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73616671 73617914 771454 772697 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 73619115 73620754 773979 775609 NC_000014.9 scf7180000172776 99.32 True fake: scaffold gap size wrong estimation (local) 73621127 73625127 775985 780128 NC_000014.9 scf7180000172776 96.95 True local misassembly 73625525 73626414 780216 781105 NC_000014.9 scf7180000172776 99.89 True fake: scaffold gap size wrong estimation (local) 73627037 73627780 781990 782733 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 73629057 73629675 783650 784268 NC_000014.9 scf7180000172776 100.0 True relocation, scaffold gap is present, inconsistency = 17324 73647385 73648138 784654 785406 NC_000014.9 scf7180000172776 99.87 True relocation, inconsistency = -42567183 31081036 31081949 785487 786400 NC_000014.9 scf7180000172776 100.0 True relocation, inconsistency = 42547950 73629900 73632134 786401 788634 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 73633130 73635482 789362 791714 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 73636503 73637633 792597 793727 NC_000014.9 scf7180000172776 100.0 True local misassembly 73635494 73636186 793754 794446 NC_000014.9 scf7180000172776 99.86 True local misassembly 73639660 73640475 794447 795262 NC_000014.9 scf7180000172776 100.0 True local misassembly 73638600 73639495 795298 796193 NC_000014.9 scf7180000172776 99.89 True fake: scaffold gap size wrong estimation (local) 73642873 73643558 798056 798741 NC_000014.9 scf7180000172776 97.08 True fake: scaffold gap size wrong estimation (local) 73644092 73647267 799479 802604 NC_000014.9 scf7180000172776 98.37 True fake: scaffold gap size wrong estimation (local) 73648409 73649086 803729 804406 NC_000014.9 scf7180000172776 96.9 True fake: scaffold gap size wrong estimation (local) 73649532 73650706 804652 805826 NC_000014.9 scf7180000172776 98.3 True fake: scaffold gap size wrong estimation (local) 73650707 73651397 806217 806907 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73652038 73653620 807712 809294 NC_000014.9 scf7180000172776 98.86 True local misassembly 73653621 73654589 809422 810390 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73654839 73655354 810496 811011 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 73655452 73660046 811139 815693 NC_000014.9 scf7180000172776 98.76 True fake: scaffold gap size wrong estimation (local) 73660192 73663222 815841 818906 NC_000014.9 scf7180000172776 98.77 True fake: scaffold gap size wrong estimation (local) 73663476 73665534 819133 821191 NC_000014.9 scf7180000172776 99.95 True fake: scaffold gap size wrong estimation (local) 73665793 73667255 821393 822855 NC_000014.9 scf7180000172776 100.0 True relocation, scaffold gap is present, inconsistency = -18261947 55407535 55420126 825082 837703 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 55421716 55422334 839224 839842 NC_000014.9 scf7180000172776 99.68 True fake: scaffold gap size wrong estimation (local) 55422708 55426093 840220 843605 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 55426288 55428122 843785 845613 NC_000014.9 scf7180000172776 99.61 True fake: scaffold gap size wrong estimation (local) 55428362 55429533 845868 847039 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 55429782 55435358 847252 852837 NC_000014.9 scf7180000172776 99.08 True fake: scaffold gap size wrong estimation (local) 55437372 55438911 854649 856188 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55440057 55440955 857672 858570 NC_000014.9 scf7180000172776 99.89 True local misassembly 55441201 55441896 858571 859266 NC_000014.9 scf7180000172776 97.13 True fake: scaffold gap size wrong estimation (local) 55442283 55447627 859722 865011 NC_000014.9 scf7180000172776 97.98 True fake: scaffold gap size wrong estimation (local) 55447713 55455681 865086 873098 NC_000014.9 scf7180000172776 99.72 True fake: scaffold gap size wrong estimation (local) 55456879 55462726 874072 879891 NC_000014.9 scf7180000172776 99.26 True fake: scaffold gap size wrong estimation (local) 55462976 55471777 880257 889007 NC_000014.9 scf7180000172776 98.61 True fake: scaffold gap size wrong estimation (local) 55472392 55476305 889638 893492 NC_000014.9 scf7180000172776 98.32 True fake: scaffold gap size wrong estimation (local) 55476566 55478895 893746 896075 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 55478996 55480457 896218 897679 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 55481240 55485256 898435 902419 NC_000014.9 scf7180000172776 99.13 True fake: scaffold gap size wrong estimation (local) 55485983 55486915 903501 904433 NC_000014.9 scf7180000172776 99.89 True fake: not a misassembly (possible transposable element) 55164938 55165534 906035 906631 NC_000014.9 scf7180000172776 100.0 True fake: not a misassembly (possible transposable element) 55487899 55489648 906690 908439 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 55490426 55491798 909138 910510 NC_000014.9 scf7180000172776 99.78 True relocation, scaffold gap is present, inconsistency = -324578 55167269 55168913 910559 912203 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 55169358 55169931 913110 913683 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55170152 55171842 914581 916271 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55173661 55174558 918143 919040 NC_000014.9 scf7180000172776 99.44 True relocation, scaffold gap is present, inconsistency = 320428 55496649 55502090 920703 926311 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 55502333 55504627 926592 928886 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55504856 55507787 929081 932115 NC_000014.9 scf7180000172776 99.97 True fake: scaffold gap size wrong estimation (local) 55508194 55509319 932372 933497 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55509972 55517949 934272 942237 NC_000014.9 scf7180000172776 99.74 True fake: scaffold gap size wrong estimation (local) 55518176 55519229 942378 943431 NC_000014.9 scf7180000172776 99.91 True fake: scaffold gap size wrong estimation (local) 55519230 55520433 943622 944825 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 55520593 55521435 945023 945865 NC_000014.9 scf7180000172776 99.29 True local misassembly 55521600 55522796 945866 947062 NC_000014.9 scf7180000172776 98.16 True fake: scaffold gap size wrong estimation (local) 55524623 55528961 949125 953563 NC_000014.9 scf7180000172776 99.56 True fake: scaffold gap size wrong estimation (local) 55529127 55537510 953712 962088 NC_000014.9 scf7180000172776 99.71 True fake: scaffold gap size wrong estimation (local) 55537630 55538207 962188 962765 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55538715 55542887 963194 967366 NC_000014.9 scf7180000172776 99.9 True fake: scaffold gap size wrong estimation (local) 55543076 55544927 967470 969320 NC_000014.9 scf7180000172776 99.68 True fake: scaffold gap size wrong estimation (local) 55545099 55547169 969449 971519 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 55547449 55549071 971865 973486 NC_000014.9 scf7180000172776 99.88 True fake: scaffold gap size wrong estimation (local) 55549309 55551641 973681 976009 NC_000014.9 scf7180000172776 99.74 True fake: scaffold gap size wrong estimation (local) 55552369 55557866 976757 982266 NC_000014.9 scf7180000172776 99.25 True fake: scaffold gap size wrong estimation (local) 55558067 55559524 982406 983863 NC_000014.9 scf7180000172776 99.79 True fake: scaffold gap size wrong estimation (local) 55559777 55561579 984103 985905 NC_000014.9 scf7180000172776 99.94 True fake: scaffold gap size wrong estimation (local) 55561880 55564199 986160 988479 NC_000014.9 scf7180000172776 99.96 True fake: scaffold gap size wrong estimation (local) 55564470 55566624 988771 990925 NC_000014.9 scf7180000172776 99.95 True fake: scaffold gap size wrong estimation (local) 55566775 55589669 991031 1014510 NC_000014.9 scf7180000172776 96.06 True fake: scaffold gap size wrong estimation (local) 55590015 55590748 1014806 1015539 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 55590931 55591584 1015656 1016309 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55591767 55595895 1016473 1020642 NC_000014.9 scf7180000172776 99.66 True fake: scaffold gap size wrong estimation (local) 55596180 55597609 1021014 1022443 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55598428 55602605 1023215 1027392 NC_000014.9 scf7180000172776 100.0 True indel: indel (<= 5bp) 55602607 55608861 1027393 1033647 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 55608862 55611277 1034979 1037394 NC_000014.9 scf7180000172776 98.18 True fake: scaffold gap size wrong estimation (local) 55611278 55612892 1037411 1039025 NC_000014.9 scf7180000172776 99.32 True indel: indel (<= 5bp) 55612895 55613491 1039026 1039622 NC_000014.9 scf7180000172776 96.48 True indel: indel (<= 5bp) 55613493 55615800 1039623 1041930 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 55615801 55621860 1041962 1048021 NC_000014.9 scf7180000172776 99.92 True fake: scaffold gap size wrong estimation (local) 55622121 55627499 1048193 1053571 NC_000014.9 scf7180000172776 99.98 True fake: scaffold gap size wrong estimation (local) 55627817 55629161 1053774 1055118 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55629414 55647381 1055357 1073458 NC_000014.9 scf7180000172776 98.1 True fake: scaffold gap size wrong estimation (local) 55647935 55652415 1074017 1078496 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 55652640 55677220 1078623 1103502 NC_000014.9 scf7180000172776 98.46 True fake: scaffold gap size wrong estimation (local) 55677495 55687564 1103523 1113736 NC_000014.9 scf7180000172776 99.83 True fake: not a misassembly (possible transposable element) 54540319 54541088 1114506 1113737 NC_000014.9 scf7180000172776 100.0 True fake: not a misassembly (possible transposable element) 55687670 55688369 1114706 1115405 NC_000014.9 scf7180000172776 99.86 True indel: indel (> 5bp) 55688430 55696355 1115406 1123331 NC_000014.9 scf7180000172776 99.68 True fake: scaffold gap size wrong estimation (local) 55696356 55703427 1124846 1131917 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55703667 55714164 1132111 1142608 NC_000014.9 scf7180000172776 99.99 True fake: scaffold gap size wrong estimation (local) 55714296 55715216 1142720 1143640 NC_000014.9 scf7180000172776 99.89 True fake: scaffold gap size wrong estimation (local) 55715491 55718036 1143888 1146421 NC_000014.9 scf7180000172776 99.53 True fake: scaffold gap size wrong estimation (local) 55718483 55726677 1146854 1155048 NC_000014.9 scf7180000172776 99.99 True fake: scaffold gap size wrong estimation (local) 55727715 55738645 1156064 1166871 NC_000014.9 scf7180000172776 98.85 True fake: scaffold gap size wrong estimation (local) 55738691 55741635 1166967 1169912 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 55741751 55751001 1170038 1179334 NC_000014.9 scf7180000172776 99.83 True fake: scaffold gap size wrong estimation (local) 55751611 55757369 1179897 1185670 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 55757549 55783333 1185749 1211706 NC_000014.9 scf7180000172776 99.17 True fake: scaffold gap size wrong estimation (local) 55783302 55788612 1212281 1217510 NC_000014.9 scf7180000172776 98.38 True fake: scaffold gap size wrong estimation (local) 55788805 55808898 1217714 1237751 NC_000014.9 scf7180000172776 99.45 True fake: scaffold gap size wrong estimation (local) 55813435 55818235 1241851 1246585 NC_000014.9 scf7180000172776 98.46 True fake: scaffold gap size wrong estimation (local) 55818394 55830909 1246769 1259597 NC_000014.9 scf7180000172776 97.6 True fake: scaffold gap size wrong estimation (local) 55831703 55839966 1260094 1268278 NC_000014.9 scf7180000172776 98.81 True fake: scaffold gap size wrong estimation (local) 55840234 55856458 1268629 1284843 NC_000014.9 scf7180000172776 99.89 True fake: scaffold gap size wrong estimation (local) 55856645 55859166 1284975 1287496 NC_000014.9 scf7180000172776 99.64 True fake: scaffold gap size wrong estimation (local) 55859477 55862012 1287704 1290293 NC_000014.9 scf7180000172776 99.72 True fake: scaffold gap size wrong estimation (local) 55863423 55873924 1291499 1302001 NC_000014.9 scf7180000172776 99.84 True fake: scaffold gap size wrong estimation (local) 55874097 55887351 1302112 1315396 NC_000014.9 scf7180000172776 99.96 True fake: scaffold gap size wrong estimation (local) 55887464 55894883 1315550 1322925 NC_000014.9 scf7180000172776 99.26 True fake: scaffold gap size wrong estimation (local) 55895014 55918624 1323018 1346611 NC_000014.9 scf7180000172776 99.9 True fake: scaffold gap size wrong estimation (local) 55919899 55936385 1348140 1364645 NC_000014.9 scf7180000172776 99.98 True fake: not a misassembly (possible transposable element) 88183964 88185490 1364666 1366192 NC_000014.9 scf7180000172776 100.0 True fake: not a misassembly (possible transposable element) 55937217 55976039 1366193 1405025 NC_000014.9 scf7180000172776 99.88 True fake: scaffold gap size wrong estimation (local) 55976202 55988215 1405143 1417156 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55993251 55994108 1422259 1423116 NC_000014.9 scf7180000172776 99.42 True fake: scaffold gap size wrong estimation (local) 55996788 55998202 1425317 1426731 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55998696 55999485 1427387 1428176 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 55999921 56006668 1428432 1435179 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 56007592 56008927 1435620 1436955 NC_000014.9 scf7180000172776 99.93 True fake: scaffold gap size wrong estimation (local) 56009223 56011195 1437018 1438990 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 56013328 56014037 1439506 1440215 NC_000014.9 scf7180000172776 100.0 True local misassembly 56011125 56013885 1441012 1443772 NC_000014.9 scf7180000172776 99.96 True fake: not a misassembly (possible transposable element) 80921493 80928279 1443773 1450559 NC_000014.9 scf7180000172776 99.85 True fake: not a misassembly (possible transposable element) 56019553 56031396 1450619 1462409 NC_000014.9 scf7180000172776 99.41 True fake: scaffold gap size wrong estimation (local) 56031565 56040554 1462576 1471577 NC_000014.9 scf7180000172776 99.76 True fake: scaffold gap size wrong estimation (local) 56040796 56045547 1471767 1476518 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 56045448 56054680 1476995 1486058 NC_000014.9 scf7180000172776 98.16 True fake: scaffold gap size wrong estimation (local) 56054736 56061499 1486117 1492880 NC_000014.9 scf7180000172776 99.99 True fake: scaffold gap size wrong estimation (local) 56061683 56064492 1492999 1495808 NC_000014.9 scf7180000172776 100.0 True fake: scaffold gap size wrong estimation (local) 56064544 56071335 1495937 1502713 NC_000014.9 scf7180000172776 98.49 True fake: scaffold gap size wrong estimation (local) 56072240 56080568 1503523 1511799 NC_000014.9 scf7180000172776 99.27 True fake: scaffold gap size wrong estimation (local) 56080656 56102323 1511934 1533530 NC_000014.9 scf7180000172776 99.59 True fake: scaffold gap size wrong estimation (local) 56102911 56106812 1534083 1538061 NC_000014.9 scf7180000172776 98.51 True fake: scaffold gap size wrong estimation (local) 56106937 56109934 1538158 1541154 NC_000014.9 scf7180000172776 99.97 True fake: scaffold gap size wrong estimation (local) 56110129 56111696 1541286 1542856 NC_000014.9 scf7180000172776 99.87 True fake: scaffold gap size wrong estimation (local) 56111950 56155599 1543035 1586684 NC_000014.9 scf7180000172776 99.95 True fake: scaffold gap size wrong estimation (local) 56155753 56166306 1586818 1597504 NC_000014.9 scf7180000172776 98.74 True fake: scaffold gap size wrong estimation (local) 56167230 56171206 1598329 1602305 NC_000014.9 scf7180000172776 99.72 True fake: not a misassembly (possible transposable element) 74569014 74571092 1602551 1604629 NC_000014.9 scf7180000172776 99.86 True fake: not a misassembly (possible transposable element) 56171777 56174004 1604630 1606857 NC_000014.9 scf7180000172776 99.96 True relocation, scaffold gap is present, inconsistency = 18397178 74571252 74578974 1606927 1614639 NC_000014.9 scf7180000172776 99.66 True fake: scaffold gap size wrong estimation (local) 74579132 74590753 1614751 1626235 NC_000014.9 scf7180000172776 98.81 True fake: not a misassembly (possible transposable element) 65472265 65473986 1626256 1627977 NC_000014.9 scf7180000172776 99.83 True fake: not a misassembly (possible transposable element) 74590679 74603237 1627978 1640644 NC_000014.9 scf7180000172776 98.68 True fake: scaffold gap size wrong estimation (local) 74603398 74607942 1640803 1645375 NC_000014.9 scf7180000172776 99.67 True fake: scaffold gap size wrong estimation (local) 74608707 74612734 1646067 1650094 NC_000014.9 scf7180000172776 99.5 True fake: scaffold gap size wrong estimation (local) 74613213 74622792 1650547 1660126 NC_000014.9 scf7180000172776 99.96 True fake: scaffold gap size wrong estimation (local) 74623561 74625759 1660843 1662965 NC_000014.9 scf7180000172776 96.33 True fake: scaffold gap size wrong estimation (local) 74627168 74629613 1664467 1666912 NC_000014.9 scf7180000172776 99.88 True local misassembly 74629727 74630343 1666913 1667529 NC_000014.9 scf7180000172776 96.6 True fake: scaffold gap size wrong estimation (local) 74630344 74633196 1667828 1670680 NC_000014.9 scf7180000172776 99.86 True fake: scaffold gap size wrong estimation (local) 74633344 74641305 1670782 1678392 NC_000014.9 scf7180000172776 95.41 True fake: scaffold gap size wrong estimation (local) 74641555 74644095 1678611 1681151 NC_000014.9 scf7180000172776 99.84 True fake: scaffold gap size wrong estimation (local) 74644187 74644904 1681308 1682025 NC_000014.9 scf7180000172776 100.0 True local misassembly 74645094 74646839 1682026 1683771 NC_000014.9 scf7180000172776 98.22 True indel: stretch of mismatches 74646952 74650579 1683884 1687511 NC_000014.9 scf7180000172776 99.95 True relocation, inconsistency = -22464887 52185693 52191114 1687512 1692770 NC_000014.9 scf7180000172776 96.48 True fake: scaffold gap size wrong estimation (local) 52191186 52199483 1692847 1701095 NC_000014.9 scf7180000172776 98.48 True fake: scaffold gap size wrong estimation (local) 52200521 52201049 1702050 1702578 NC_000014.9 scf7180000172776 99.62 True CONTIG scf7180000172776 1702579 misassembled 41097635 41099302 1 1668 NC_000014.9 scf7180000172777 99.94 True fake: scaffold gap size wrong estimation (local) 41100023 41110506 2447 13230 NC_000014.9 scf7180000172777 96.68 True fake: scaffold gap size wrong estimation (local) 41110809 41117794 13486 20447 NC_000014.9 scf7180000172777 98.97 True fake: scaffold gap size wrong estimation (local) 41118547 41134046 21467 36917 NC_000014.9 scf7180000172777 98.01 True fake: scaffold gap size wrong estimation (local) 41134803 41139520 37631 42343 NC_000014.9 scf7180000172777 99.66 True fake: scaffold gap size wrong estimation (local) 41140673 41150314 43455 53132 NC_000014.9 scf7180000172777 99.42 True fake: scaffold gap size wrong estimation (local) 41150527 41154086 53230 56800 NC_000014.9 scf7180000172777 99.8 True fake: scaffold gap size wrong estimation (local) 41154498 41159404 57220 62140 NC_000014.9 scf7180000172777 99.9 True fake: scaffold gap size wrong estimation (local) 41160057 41194402 62542 97120 NC_000014.9 scf7180000172777 98.98 True fake: scaffold gap size wrong estimation (local) 41197361 41209366 99712 111725 NC_000014.9 scf7180000172777 99.89 True fake: scaffold gap size wrong estimation (local) 41215262 41218422 118467 121627 NC_000014.9 scf7180000172777 99.94 True fake: scaffold gap size wrong estimation (local) 41219441 41220028 122452 123039 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 41220074 41228558 123197 131636 NC_000014.9 scf7180000172777 99.3 True fake: scaffold gap size wrong estimation (local) 41228643 41262392 131786 165424 NC_000014.9 scf7180000172777 99.29 True indel: indel (<= 5bp) 41262495 41271485 165528 174519 NC_000014.9 scf7180000172777 99.91 True fake: scaffold gap size wrong estimation (local) 41271618 41278279 174594 181244 NC_000014.9 scf7180000172777 99.64 True indel: indel (<= 5bp) 41278432 41290565 181401 193533 NC_000014.9 scf7180000172777 99.8 True fake: scaffold gap size wrong estimation (local) 41291218 41324723 194088 227804 NC_000014.9 scf7180000172777 99.06 True fake: scaffold gap size wrong estimation (local) 41337742 41338340 244500 245094 NC_000014.9 scf7180000172777 98.16 True fake: scaffold gap size wrong estimation (local) 41339893 41347221 246751 254082 NC_000014.9 scf7180000172777 99.51 True fake: scaffold gap size wrong estimation (local) 41347795 41371601 254491 278270 NC_000014.9 scf7180000172777 99.57 True fake: scaffold gap size wrong estimation (local) 41372485 41381873 278996 288384 NC_000014.9 scf7180000172777 99.96 True fake: scaffold gap size wrong estimation (local) 41382113 41386474 288592 292961 NC_000014.9 scf7180000172777 99.68 True fake: scaffold gap size wrong estimation (local) 41386644 41395921 293096 302373 NC_000014.9 scf7180000172777 99.95 True fake: scaffold gap size wrong estimation (local) 41396568 41420451 302973 327396 NC_000014.9 scf7180000172777 96.8 True fake: scaffold gap size wrong estimation (local) 41420786 41421479 327660 328353 NC_000014.9 scf7180000172777 99.86 True fake: scaffold gap size wrong estimation (local) 41421642 41466243 328455 373131 NC_000014.9 scf7180000172777 99.31 True fake: scaffold gap size wrong estimation (local) 41466433 41469507 373347 376421 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 41469664 41482598 376564 389479 NC_000014.9 scf7180000172777 99.71 True fake: scaffold gap size wrong estimation (local) 41482458 41492203 389677 399357 NC_000014.9 scf7180000172777 99.25 True fake: scaffold gap size wrong estimation (local) 41492756 41493697 399873 400814 NC_000014.9 scf7180000172777 99.26 True fake: scaffold gap size wrong estimation (local) 41493925 41494536 401380 401991 NC_000014.9 scf7180000172777 97.06 True fake: scaffold gap size wrong estimation (local) 41494675 41495215 402093 402633 NC_000014.9 scf7180000172777 99.08 True fake: scaffold gap size wrong estimation (local) 41495713 41508233 403140 415694 NC_000014.9 scf7180000172777 99.74 True fake: scaffold gap size wrong estimation (local) 41508448 41509524 415877 416953 NC_000014.9 scf7180000172777 99.91 True fake: scaffold gap size wrong estimation (local) 41509693 41516132 417306 423768 NC_000014.9 scf7180000172777 99.5 True fake: scaffold gap size wrong estimation (local) 41516676 41518576 424296 426222 NC_000014.9 scf7180000172777 97.41 True fake: scaffold gap size wrong estimation (local) 41520225 41520904 428665 429344 NC_000014.9 scf7180000172777 99.56 True fake: scaffold gap size wrong estimation (local) 41521695 41526289 430143 434747 NC_000014.9 scf7180000172777 99.96 True fake: scaffold gap size wrong estimation (local) 41526757 41539336 434804 447856 NC_000014.9 scf7180000172777 96.69 True fake: scaffold gap size wrong estimation (local) 41540778 41554678 449210 463341 NC_000014.9 scf7180000172777 98.07 True fake: scaffold gap size wrong estimation (local) 41554983 41566460 463490 474956 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 41567098 41575047 475493 483464 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 41575266 41582918 483636 491432 NC_000014.9 scf7180000172777 98.21 True fake: scaffold gap size wrong estimation (local) 41583530 41595745 492030 504184 NC_000014.9 scf7180000172777 99.42 True fake: scaffold gap size wrong estimation (local) 41595960 41649105 504402 559055 NC_000014.9 scf7180000172777 96.7 True fake: scaffold gap size wrong estimation (local) 41649158 41659526 559110 569498 NC_000014.9 scf7180000172777 98.53 True fake: scaffold gap size wrong estimation (local) 41660066 41670140 570004 580078 NC_000014.9 scf7180000172777 99.98 True indel: indel (> 5bp) 41670290 41671604 580152 581466 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 41671852 41673349 581669 583166 NC_000014.9 scf7180000172777 99.6 True local misassembly 41674809 41675438 583279 583908 NC_000014.9 scf7180000172777 98.1 True indel: indel (> 5bp) 41675489 41681434 583937 589882 NC_000014.9 scf7180000172777 99.93 True fake: scaffold gap size wrong estimation (local) 41681828 41688916 590252 597369 NC_000014.9 scf7180000172777 99.77 True fake: not a misassembly (possible transposable element) 96444949 96445589 597394 598034 NC_000014.9 scf7180000172777 100.0 True fake: not a misassembly (possible transposable element) 41689025 41689639 598035 598649 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 41690267 41696007 599592 605364 NC_000014.9 scf7180000172777 99.69 True fake: not a misassembly (possible transposable element) 96449708 96450223 605425 605941 NC_000014.9 scf7180000172777 99.81 True fake: not a misassembly (possible transposable element) 41696153 41715786 606065 625757 NC_000014.9 scf7180000172777 99.7 True fake: scaffold gap size wrong estimation (local) 41716010 41719880 626118 629988 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 41719736 41734021 630381 644666 NC_000014.9 scf7180000172777 99.99 True fake: not a misassembly (possible transposable element) 96446776 96447381 644768 645373 NC_000014.9 scf7180000172777 98.84 True fake: not a misassembly (possible transposable element) 41734346 41735644 645732 647030 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 41737225 41752311 648327 663475 NC_000014.9 scf7180000172777 99.41 True relocation, scaffold gap is present, inconsistency = 453301 42207549 42208873 665412 666736 NC_000014.9 scf7180000172777 99.62 True fake: scaffold gap size wrong estimation (local) 42210119 42246030 667973 703754 NC_000014.9 scf7180000172777 99.14 True fake: scaffold gap size wrong estimation (local) 42246261 42253158 703849 711014 NC_000014.9 scf7180000172777 96.24 True fake: scaffold gap size wrong estimation (local) 42253538 42255371 711335 713168 NC_000014.9 scf7180000172777 99.78 True fake: scaffold gap size wrong estimation (local) 42258146 42261253 715771 718950 NC_000014.9 scf7180000172777 99.9 True indel: indel (<= 5bp) 42261387 42272401 719083 730118 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 42272697 42273820 730394 731517 NC_000014.9 scf7180000172777 99.73 True local misassembly 42273956 42275156 731518 732718 NC_000014.9 scf7180000172777 98.37 True fake: not a misassembly (possible transposable element) 27238156 27239945 734508 732719 NC_000014.9 scf7180000172777 100.0 True fake: not a misassembly (possible transposable element) 42276006 42279097 734540 737630 NC_000014.9 scf7180000172777 99.84 True fake: scaffold gap size wrong estimation (local) 42279553 42280079 738006 738532 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 42281025 42281682 739409 740066 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 42282131 42282686 740633 741188 NC_000014.9 scf7180000172777 99.28 True fake: scaffold gap size wrong estimation (local) 42283579 42291937 741820 750308 NC_000014.9 scf7180000172777 99.25 True fake: scaffold gap size wrong estimation (local) 42292377 42296698 750700 755005 NC_000014.9 scf7180000172777 99.12 True fake: scaffold gap size wrong estimation (local) 42296874 42307413 755296 765783 NC_000014.9 scf7180000172777 97.44 True fake: scaffold gap size wrong estimation (local) 42307651 42319356 765990 777695 NC_000014.9 scf7180000172777 99.9 True fake: not a misassembly (possible transposable element) 46462790 46464074 777696 778980 NC_000014.9 scf7180000172777 99.85 True fake: not a misassembly (possible transposable element) 42319860 42330193 779001 789323 NC_000014.9 scf7180000172777 99.8 True fake: scaffold gap size wrong estimation (local) 42332177 42351221 791142 810189 NC_000014.9 scf7180000172777 99.89 True fake: scaffold gap size wrong estimation (local) 42351473 42359773 810422 818914 NC_000014.9 scf7180000172777 98.02 True fake: scaffold gap size wrong estimation (local) 42359916 42366746 819045 825836 NC_000014.9 scf7180000172777 99.28 True fake: scaffold gap size wrong estimation (local) 42367634 42393314 826690 852410 NC_000014.9 scf7180000172777 99.79 True fake: scaffold gap size wrong estimation (local) 42393539 42397644 852735 856696 NC_000014.9 scf7180000172777 96.43 True fake: scaffold gap size wrong estimation (local) 42398065 42404820 857046 863801 NC_000014.9 scf7180000172777 99.91 True fake: scaffold gap size wrong estimation (local) 42405680 42410855 864664 869624 NC_000014.9 scf7180000172777 95.6 True fake: scaffold gap size wrong estimation (local) 42410920 42425832 869703 884785 NC_000014.9 scf7180000172777 98.88 True fake: scaffold gap size wrong estimation (local) 42427862 42429839 886544 888521 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 42429840 42432014 888957 891131 NC_000014.9 scf7180000172777 99.95 True indel: stretch of mismatches 42432132 42433243 891249 892362 NC_000014.9 scf7180000172777 98.56 True relocation, scaffold gap is present, inconsistency = -16450022 25983890 25984733 893031 893874 NC_000014.9 scf7180000172777 99.76 True fake: scaffold gap size wrong estimation (local) 25985280 26002475 894534 911731 NC_000014.9 scf7180000172777 99.76 True fake: scaffold gap size wrong estimation (local) 26002711 26006523 911850 915662 NC_000014.9 scf7180000172777 99.82 True fake: scaffold gap size wrong estimation (local) 26006793 26063581 915923 972684 NC_000014.9 scf7180000172777 99.66 True fake: not a misassembly (possible transposable element) 62496778 62498081 974008 972705 NC_000014.9 scf7180000172777 99.77 True fake: not a misassembly (possible transposable element) 26062858 26069319 974009 980470 NC_000014.9 scf7180000172777 99.8 True fake: scaffold gap size wrong estimation (local) 26069462 26081035 980574 992118 NC_000014.9 scf7180000172777 99.48 True fake: scaffold gap size wrong estimation (local) 26081636 26082726 992675 993779 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 26082993 26099817 993978 1010814 NC_000014.9 scf7180000172777 99.88 True fake: scaffold gap size wrong estimation (local) 26100316 26106696 1011268 1017648 NC_000014.9 scf7180000172777 99.84 True fake: scaffold gap size wrong estimation (local) 26112076 26143452 1024273 1055843 NC_000014.9 scf7180000172777 98.94 True fake: scaffold gap size wrong estimation (local) 26144026 26146613 1056366 1058953 NC_000014.9 scf7180000172777 99.96 True fake: scaffold gap size wrong estimation (local) 26146827 26151653 1059056 1063875 NC_000014.9 scf7180000172777 99.83 True fake: not a misassembly (possible transposable element) 100100004 100100734 1064606 1063876 NC_000014.9 scf7180000172777 100.0 True fake: not a misassembly (possible transposable element) 26151706 26201151 1064627 1114267 NC_000014.9 scf7180000172777 99.14 True fake: scaffold gap size wrong estimation (local) 26201359 26203026 1114382 1116049 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 26203662 26204412 1116728 1117478 NC_000014.9 scf7180000172777 99.73 True indel: indel (> 5bp) 26204431 26210430 1117479 1123478 NC_000014.9 scf7180000172777 99.92 True fake: scaffold gap size wrong estimation (local) 26210431 26215753 1124400 1129722 NC_000014.9 scf7180000172777 99.92 True fake: scaffold gap size wrong estimation (local) 26216576 26223110 1130489 1137023 NC_000014.9 scf7180000172777 99.89 True fake: scaffold gap size wrong estimation (local) 26223377 26228492 1137247 1142388 NC_000014.9 scf7180000172777 99.84 True fake: scaffold gap size wrong estimation (local) 26228735 26244690 1142672 1158368 NC_000014.9 scf7180000172777 97.69 True fake: scaffold gap size wrong estimation (local) 26245019 26246658 1158669 1160308 NC_000014.9 scf7180000172777 99.82 True fake: scaffold gap size wrong estimation (local) 26246880 26268452 1160498 1182030 NC_000014.9 scf7180000172777 99.43 True fake: scaffold gap size wrong estimation (local) 26268700 26278413 1182239 1191967 NC_000014.9 scf7180000172777 99.84 True fake: not a misassembly (possible transposable element) 30506008 30506599 1192579 1191988 NC_000014.9 scf7180000172777 100.0 True fake: not a misassembly (possible transposable element) 26278328 26295771 1192586 1210034 NC_000014.9 scf7180000172777 99.82 True fake: scaffold gap size wrong estimation (local) 26300635 26309465 1214921 1223749 NC_000014.9 scf7180000172777 99.74 True fake: scaffold gap size wrong estimation (local) 26309575 26310610 1223845 1224879 NC_000014.9 scf7180000172777 99.52 True fake: scaffold gap size wrong estimation (local) 26310857 26312005 1225000 1226158 NC_000014.9 scf7180000172777 98.68 True fake: scaffold gap size wrong estimation (local) 26313612 26314385 1227828 1228597 NC_000014.9 scf7180000172777 99.35 True fake: scaffold gap size wrong estimation (local) 26315010 26321405 1229040 1235447 NC_000014.9 scf7180000172777 99.89 True fake: scaffold gap size wrong estimation (local) 26321504 26347613 1235538 1261653 NC_000014.9 scf7180000172777 99.69 True fake: scaffold gap size wrong estimation (local) 26347834 26350830 1261805 1264795 NC_000014.9 scf7180000172777 99.7 True fake: scaffold gap size wrong estimation (local) 26350963 26368113 1264978 1282130 NC_000014.9 scf7180000172777 99.75 True fake: scaffold gap size wrong estimation (local) 26368351 26368990 1282249 1282888 NC_000014.9 scf7180000172777 99.84 True fake: scaffold gap size wrong estimation (local) 26369087 26383814 1283080 1297818 NC_000014.9 scf7180000172777 99.77 True fake: scaffold gap size wrong estimation (local) 26384095 26386460 1298083 1300448 NC_000014.9 scf7180000172777 99.83 True fake: scaffold gap size wrong estimation (local) 26386606 26409191 1300574 1323062 NC_000014.9 scf7180000172777 99.48 True fake: scaffold gap size wrong estimation (local) 26409460 26423438 1323379 1337357 NC_000014.9 scf7180000172777 99.95 True fake: scaffold gap size wrong estimation (local) 26424204 26430421 1338083 1344299 NC_000014.9 scf7180000172777 99.94 True fake: scaffold gap size wrong estimation (local) 26430622 26436035 1344451 1349882 NC_000014.9 scf7180000172777 99.8 True fake: scaffold gap size wrong estimation (local) 26436559 26440796 1350258 1354498 NC_000014.9 scf7180000172777 99.93 True fake: scaffold gap size wrong estimation (local) 26440937 26461753 1354519 1375376 NC_000014.9 scf7180000172777 99.75 True fake: scaffold gap size wrong estimation (local) 26461941 26465226 1375542 1378827 NC_000014.9 scf7180000172777 99.94 True fake: scaffold gap size wrong estimation (local) 26465245 26476732 1378892 1390886 NC_000014.9 scf7180000172777 95.6 True fake: scaffold gap size wrong estimation (local) 26476955 26484180 1391035 1398254 NC_000014.9 scf7180000172777 99.78 True fake: scaffold gap size wrong estimation (local) 26484458 26486466 1398488 1400496 NC_000014.9 scf7180000172777 99.85 True fake: scaffold gap size wrong estimation (local) 26486742 26490854 1400649 1404761 NC_000014.9 scf7180000172777 99.9 True fake: scaffold gap size wrong estimation (local) 26491115 26492777 1404928 1406590 NC_000014.9 scf7180000172777 99.88 True fake: scaffold gap size wrong estimation (local) 26492926 26495598 1406788 1409462 NC_000014.9 scf7180000172777 99.93 True fake: scaffold gap size wrong estimation (local) 26497355 26498178 1411115 1411938 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 26498339 26516922 1412090 1430882 NC_000014.9 scf7180000172777 97.92 True fake: scaffold gap size wrong estimation (local) 26517146 26523748 1431001 1437603 NC_000014.9 scf7180000172777 99.97 True fake: scaffold gap size wrong estimation (local) 26523932 26529247 1437690 1443035 NC_000014.9 scf7180000172777 99.66 True fake: scaffold gap size wrong estimation (local) 26529346 26529995 1443177 1443826 NC_000014.9 scf7180000172777 100.0 True local misassembly 26530116 26531381 1443827 1445092 NC_000014.9 scf7180000172777 97.79 True fake: scaffold gap size wrong estimation (local) 26531508 26576056 1445182 1489695 NC_000014.9 scf7180000172777 99.1 True fake: scaffold gap size wrong estimation (local) 26576256 26615734 1489784 1529135 NC_000014.9 scf7180000172777 99.32 True indel: stretch of mismatches 26615801 26624244 1529202 1537645 NC_000014.9 scf7180000172777 99.92 True fake: scaffold gap size wrong estimation (local) 26624455 26629279 1537792 1542522 NC_000014.9 scf7180000172777 97.42 True fake: scaffold gap size wrong estimation (local) 26635264 26638765 1553381 1556882 NC_000014.9 scf7180000172777 99.86 True fake: scaffold gap size wrong estimation (local) 26638956 26639943 1557001 1557995 NC_000014.9 scf7180000172777 99.9 True fake: scaffold gap size wrong estimation (local) 26640073 26640650 1558076 1558653 NC_000014.9 scf7180000172777 100.0 True fake: scaffold gap size wrong estimation (local) 26642362 26642964 1560273 1560875 NC_000014.9 scf7180000172777 99.5 True CONTIG scf7180000172777 1563352 misassembled 34643185 34644050 2559 1694 NC_000014.9 scf7180000172778 97.58 True local misassembly 34642336 34642951 3175 2560 NC_000014.9 scf7180000172778 95.94 True fake: scaffold gap size wrong estimation (local) 34639535 34640133 4275 3677 NC_000014.9 scf7180000172778 99.67 True local misassembly 34640690 34641539 5365 4516 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 34638362 34639289 7612 6685 NC_000014.9 scf7180000172778 97.31 True fake: scaffold gap size wrong estimation (local) 34635828 34636411 9682 9099 NC_000014.9 scf7180000172778 99.66 True local misassembly 34634608 34635240 10373 9741 NC_000014.9 scf7180000172778 96.52 True local misassembly 34633596 34634108 11237 10725 NC_000014.9 scf7180000172778 100.0 True indel: indel (<= 5bp) 34631999 34633595 12836 11240 NC_000014.9 scf7180000172778 97.18 True fake: scaffold gap size wrong estimation (local) 34628535 34630958 16223 13800 NC_000014.9 scf7180000172778 99.75 True fake: scaffold gap size wrong estimation (local) 34627710 34628274 17356 16792 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34626661 34627187 17903 17377 NC_000014.9 scf7180000172778 96.2 True local misassembly 34625566 34626500 18838 17904 NC_000014.9 scf7180000172778 99.79 True fake: scaffold gap size wrong estimation (local) 34622575 34624138 20965 19402 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 34620707 34621956 22903 21654 NC_000014.9 scf7180000172778 99.68 True fake: scaffold gap size wrong estimation (local) 34619268 34620706 24707 23269 NC_000014.9 scf7180000172778 98.61 True fake: scaffold gap size wrong estimation (local) 34618524 34619181 25748 25091 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34617031 34617545 26971 26457 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34616422 34616946 27654 27130 NC_000014.9 scf7180000172778 99.62 True fake: scaffold gap size wrong estimation (local) 34614718 34616080 29456 28094 NC_000014.9 scf7180000172778 99.78 True fake: scaffold gap size wrong estimation (local) 34613748 34614301 30238 29685 NC_000014.9 scf7180000172778 98.38 True fake: scaffold gap size wrong estimation (local) 34584982 34586932 60194 58245 NC_000014.9 scf7180000172778 99.49 True fake: scaffold gap size wrong estimation (local) 34584056 34584867 61417 60606 NC_000014.9 scf7180000172778 95.69 True fake: scaffold gap size wrong estimation (local) 34582143 34582759 63126 62510 NC_000014.9 scf7180000172778 99.68 True fake: scaffold gap size wrong estimation (local) 34581347 34581983 63882 63246 NC_000014.9 scf7180000172778 96.08 True indel: indel (> 5bp) 34580007 34581331 65207 63883 NC_000014.9 scf7180000172778 98.34 True fake: scaffold gap size wrong estimation (local) 34578961 34579600 67078 66439 NC_000014.9 scf7180000172778 99.69 True fake: scaffold gap size wrong estimation (local) 34577350 34577998 67747 67099 NC_000014.9 scf7180000172778 100.0 True local misassembly 34577999 34578509 68278 67768 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34575399 34575949 70403 69853 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34572897 34573817 72934 72014 NC_000014.9 scf7180000172778 97.61 True local misassembly 34572102 34572718 73551 72935 NC_000014.9 scf7180000172778 99.84 True indel: indel (<= 5bp) 34571415 34572098 74235 73552 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34568433 34570153 77222 75502 NC_000014.9 scf7180000172778 99.77 True fake: scaffold gap size wrong estimation (local) 34567079 34568158 79432 78353 NC_000014.9 scf7180000172778 99.81 True fake: scaffold gap size wrong estimation (local) 34560675 34563306 85734 83103 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34535761 34542492 110721 104067 NC_000014.9 scf7180000172778 98.67 True fake: scaffold gap size wrong estimation (local) 34532691 34534149 113768 112314 NC_000014.9 scf7180000172778 99.37 True fake: scaffold gap size wrong estimation (local) 34530185 34531831 116486 114849 NC_000014.9 scf7180000172778 99.32 True fake: scaffold gap size wrong estimation (local) 34528650 34529630 118260 117087 NC_000014.9 scf7180000172778 100.0 True local misassembly 34527194 34528232 119333 118294 NC_000014.9 scf7180000172778 99.42 True fake: scaffold gap size wrong estimation (local) 34524264 34525766 122358 120842 NC_000014.9 scf7180000172778 98.75 True fake: scaffold gap size wrong estimation (local) 34521851 34523254 124678 123275 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 34518048 34519970 129163 126868 NC_000014.9 scf7180000172778 99.68 True fake: scaffold gap size wrong estimation (local) 34515132 34516955 132151 130328 NC_000014.9 scf7180000172778 99.23 True fake: scaffold gap size wrong estimation (local) 34514096 34514784 133516 132828 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 34512494 34513025 134462 133931 NC_000014.9 scf7180000172778 99.81 True fake: scaffold gap size wrong estimation (local) 34509759 34510579 137242 136422 NC_000014.9 scf7180000172778 99.76 True fake: scaffold gap size wrong estimation (local) 34505639 34506833 140685 139491 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 34501623 34503815 144747 142555 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 34499774 34500712 146524 145564 NC_000014.9 scf7180000172778 98.83 True relocation, scaffold gap is present, inconsistency = -55612572 90109680 90110370 149190 148500 NC_000014.9 scf7180000172778 99.86 True relocation, scaffold gap is present, inconsistency = 69869078 20239657 20240581 149211 150135 NC_000014.9 scf7180000172778 99.89 True local misassembly 20240691 20241746 150136 151191 NC_000014.9 scf7180000172778 97.73 True fake: scaffold gap size wrong estimation (local) 20242353 20244484 151916 154047 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20244745 20248886 154388 158429 NC_000014.9 scf7180000172778 97.41 True fake: scaffold gap size wrong estimation (local) 20250222 20253253 159631 162662 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20253518 20258061 162875 167354 NC_000014.9 scf7180000172778 98.36 True fake: scaffold gap size wrong estimation (local) 20258257 20259028 167455 168226 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20259310 20261147 168523 170360 NC_000014.9 scf7180000172778 99.78 True fake: scaffold gap size wrong estimation (local) 20261363 20264660 170536 173833 NC_000014.9 scf7180000172778 99.97 True fake: scaffold gap size wrong estimation (local) 20267202 20269021 176146 177965 NC_000014.9 scf7180000172778 99.89 True fake: scaffold gap size wrong estimation (local) 20269788 20272502 178892 181606 NC_000014.9 scf7180000172778 99.74 True indel: indel (<= 5bp) 20272504 20273082 181607 182185 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20273083 20275334 182698 184949 NC_000014.9 scf7180000172778 99.56 True fake: scaffold gap size wrong estimation (local) 20275484 20276379 185488 186383 NC_000014.9 scf7180000172778 100.0 True indel: indel (> 5bp) 20276496 20279250 186436 189190 NC_000014.9 scf7180000172778 99.85 True fake: scaffold gap size wrong estimation (local) 20279959 20280534 189532 190107 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20286168 20299737 198071 211674 NC_000014.9 scf7180000172778 99.63 True fake: scaffold gap size wrong estimation (local) 20300189 20303096 212094 215001 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20303686 20307020 215576 218910 NC_000014.9 scf7180000172778 99.97 True fake: scaffold gap size wrong estimation (local) 20307471 20309424 219150 221097 NC_000014.9 scf7180000172778 99.48 True fake: scaffold gap size wrong estimation (local) 20311320 20314835 222736 226250 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20315147 20318217 226479 229484 NC_000014.9 scf7180000172778 97.77 True fake: scaffold gap size wrong estimation (local) 20318446 20320646 229764 231971 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20321643 20323675 232973 234956 NC_000014.9 scf7180000172778 97.44 True fake: scaffold gap size wrong estimation (local) 20324346 20325108 235753 236515 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20325416 20340300 236683 251434 NC_000014.9 scf7180000172778 98.71 True fake: scaffold gap size wrong estimation (local) 20340485 20341073 251607 252195 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20341285 20342374 252339 253428 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20343058 20344655 254097 255694 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 20344780 20347034 255851 258191 NC_000014.9 scf7180000172778 96.85 True fake: scaffold gap size wrong estimation (local) 20347634 20348766 258363 259495 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20349556 20351292 259546 261282 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20351753 20353293 261538 263106 NC_000014.9 scf7180000172778 99.48 True local misassembly 20349015 20349652 263156 263793 NC_000014.9 scf7180000172778 99.84 True relocation, scaffold gap is present, inconsistency = 83722193 104073445 104075290 265393 267238 NC_000014.9 scf7180000172778 99.84 True fake: scaffold gap size wrong estimation (local) 104076437 104077077 268533 269173 NC_000014.9 scf7180000172778 100.0 True relocation, scaffold gap is present, inconsistency = -83722609 20354489 20359704 269194 274409 NC_000014.9 scf7180000172778 99.98 True fake: scaffold gap size wrong estimation (local) 20360225 20361504 274872 276151 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20361505 20362540 276180 277215 NC_000014.9 scf7180000172778 100.0 True indel: indel (> 5bp) 20362612 20363516 277216 278120 NC_000014.9 scf7180000172778 97.79 True fake: scaffold gap size wrong estimation (local) 20363517 20364055 278388 278926 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20364056 20365267 278964 280175 NC_000014.9 scf7180000172778 99.92 True fake: not a misassembly (possible transposable element) 38842517 38843721 281800 280596 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 20365522 20367231 281864 283573 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 20367883 20385489 284255 301851 NC_000014.9 scf7180000172778 99.31 True fake: scaffold gap size wrong estimation (local) 20385603 20386963 301970 303330 NC_000014.9 scf7180000172778 99.93 True fake: scaffold gap size wrong estimation (local) 20387154 20388899 303522 305267 NC_000014.9 scf7180000172778 99.65 True fake: scaffold gap size wrong estimation (local) 20389140 20393564 305463 309932 NC_000014.9 scf7180000172778 99.62 True fake: scaffold gap size wrong estimation (local) 20393646 20394491 310161 311025 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20394738 20398217 311153 314648 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20398340 20402953 314757 319402 NC_000014.9 scf7180000172778 99.89 True fake: scaffold gap size wrong estimation (local) 20402990 20404186 319423 320649 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20404358 20409764 320838 326275 NC_000014.9 scf7180000172778 99.4 True fake: scaffold gap size wrong estimation (local) 20410992 20412687 327407 329102 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 20412906 20415476 329369 331937 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 20415652 20417309 332056 333713 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 20417504 20419996 333889 336351 NC_000014.9 scf7180000172778 98.63 True fake: scaffold gap size wrong estimation (local) 20420996 20422044 337338 338386 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 20422549 20423326 338539 339316 NC_000014.9 scf7180000172778 99.74 True fake: scaffold gap size wrong estimation (local) 20423327 20424453 339816 340942 NC_000014.9 scf7180000172778 99.82 True fake: scaffold gap size wrong estimation (local) 20427206 20431501 343362 347657 NC_000014.9 scf7180000172778 99.81 True fake: scaffold gap size wrong estimation (local) 20431621 20432758 347748 348912 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20432973 20453383 349129 369752 NC_000014.9 scf7180000172778 98.26 True fake: scaffold gap size wrong estimation (local) 20453772 20463821 369907 380211 NC_000014.9 scf7180000172778 99.95 True fake: scaffold gap size wrong estimation (local) 20463932 20468389 380316 384881 NC_000014.9 scf7180000172778 97.78 True fake: scaffold gap size wrong estimation (local) 20468522 20471090 385033 387601 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20471314 20473710 387743 390139 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20474038 20475559 390270 391791 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20475674 20480404 392334 397072 NC_000014.9 scf7180000172778 99.81 True fake: scaffold gap size wrong estimation (local) 20480314 20492788 397517 409925 NC_000014.9 scf7180000172778 99.16 True fake: scaffold gap size wrong estimation (local) 20492971 20494158 410086 411273 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20494387 20495544 411446 412603 NC_000014.9 scf7180000172778 99.65 True fake: scaffold gap size wrong estimation (local) 20495716 20497881 412836 415001 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 20498146 20501300 415332 418427 NC_000014.9 scf7180000172778 97.72 True fake: scaffold gap size wrong estimation (local) 20501065 20504424 418792 422151 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 20504689 20505272 422333 422916 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20507581 20518209 425084 435460 NC_000014.9 scf7180000172778 95.7 True fake: scaffold gap size wrong estimation (local) 20519548 20526235 436709 443346 NC_000014.9 scf7180000172778 98.73 True fake: scaffold gap size wrong estimation (local) 20526415 20534080 443500 451278 NC_000014.9 scf7180000172778 98.88 True fake: scaffold gap size wrong estimation (local) 20534160 20537492 451728 455060 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 20537798 20538495 455309 456006 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20538820 20543375 456945 461440 NC_000014.9 scf7180000172778 98.37 True fake: scaffold gap size wrong estimation (local) 20543627 20553996 461673 472094 NC_000014.9 scf7180000172778 99.11 True fake: scaffold gap size wrong estimation (local) 20554172 20555446 472189 473462 NC_000014.9 scf7180000172778 99.76 True fake: scaffold gap size wrong estimation (local) 20555579 20568874 473598 486892 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 20569663 20570416 487701 488454 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 20573157 20574480 490844 492166 NC_000014.9 scf7180000172778 99.47 True fake: scaffold gap size wrong estimation (local) 20576311 20589345 493740 506640 NC_000014.9 scf7180000172778 97.83 True fake: scaffold gap size wrong estimation (local) 20589804 20593399 507060 510654 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 20593520 20594273 510717 511470 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20594528 20615764 511758 532838 NC_000014.9 scf7180000172778 99.15 True fake: scaffold gap size wrong estimation (local) 20615942 20619594 532964 536614 NC_000014.9 scf7180000172778 99.84 True indel: indel (<= 5bp) 20619823 20621490 536848 538480 NC_000014.9 scf7180000172778 97.07 True fake: scaffold gap size wrong estimation (local) 20621637 20640385 538645 557689 NC_000014.9 scf7180000172778 98.92 True fake: scaffold gap size wrong estimation (local) 20640671 20646600 558012 563959 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20646779 20648676 564115 566012 NC_000014.9 scf7180000172778 99.89 True fake: scaffold gap size wrong estimation (local) 20648888 20649579 566105 566796 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20649799 20650546 567160 567907 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20651325 20653516 568536 570727 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20655255 20664203 572378 581327 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20664417 20669453 581447 586441 NC_000014.9 scf7180000172778 96.11 True fake: scaffold gap size wrong estimation (local) 20670469 20671494 587498 588523 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20673022 20674108 590531 591699 NC_000014.9 scf7180000172778 97.05 True fake: scaffold gap size wrong estimation (local) 20674295 20677610 591861 595176 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 20677722 20689757 595355 607356 NC_000014.9 scf7180000172778 98.17 True fake: scaffold gap size wrong estimation (local) 20690241 20692921 607956 610636 NC_000014.9 scf7180000172778 99.89 True fake: not a misassembly (possible transposable element) 53934826 53935530 610971 611675 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 20693122 20694313 611726 612917 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20694480 20695257 613033 613810 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20695396 20702466 613973 620940 NC_000014.9 scf7180000172778 98.35 True fake: scaffold gap size wrong estimation (local) 20704026 20705211 620961 622146 NC_000014.9 scf7180000172778 99.83 True local misassembly 20703244 20704136 622363 623256 NC_000014.9 scf7180000172778 99.78 True fake: scaffold gap size wrong estimation (local) 20705132 20706627 623277 624772 NC_000014.9 scf7180000172778 99.73 True indel: indel (<= 5bp) 20706630 20712095 624773 630238 NC_000014.9 scf7180000172778 99.87 True indel: indel (<= 5bp) 20712097 20712685 630239 630827 NC_000014.9 scf7180000172778 99.83 True indel: indel (> 5bp) 20712686 20715744 630837 633895 NC_000014.9 scf7180000172778 99.54 True local misassembly 20715957 20716693 633896 634632 NC_000014.9 scf7180000172778 97.15 True fake: scaffold gap size wrong estimation (local) 20716694 20718170 635928 637404 NC_000014.9 scf7180000172778 99.8 True local misassembly 20718348 20729294 637405 648351 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20729527 20731875 648514 650862 NC_000014.9 scf7180000172778 99.74 True fake: scaffold gap size wrong estimation (local) 20732405 20738286 651609 657483 NC_000014.9 scf7180000172778 99.13 True fake: scaffold gap size wrong estimation (local) 20738482 20745225 657731 664499 NC_000014.9 scf7180000172778 99.79 True fake: scaffold gap size wrong estimation (local) 20745513 20747039 664748 666274 NC_000014.9 scf7180000172778 99.54 True fake: scaffold gap size wrong estimation (local) 20747213 20754010 666346 673229 NC_000014.9 scf7180000172778 99.78 True fake: scaffold gap size wrong estimation (local) 20754189 20756016 673473 675300 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20757167 20759775 676333 678910 NC_000014.9 scf7180000172778 98.7 True fake: scaffold gap size wrong estimation (local) 20760363 20761882 681126 682645 NC_000014.9 scf7180000172778 99.8 True fake: scaffold gap size wrong estimation (local) 20761883 20763775 683524 685416 NC_000014.9 scf7180000172778 99.52 True local misassembly 20763895 20765635 685417 687157 NC_000014.9 scf7180000172778 98.85 True fake: scaffold gap size wrong estimation (local) 20766009 20767625 687508 689124 NC_000014.9 scf7180000172778 99.69 True fake: scaffold gap size wrong estimation (local) 20767888 20773375 689395 694882 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20773626 20774280 694996 695650 NC_000014.9 scf7180000172778 99.85 True fake: scaffold gap size wrong estimation (local) 20774529 20776992 695994 698457 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 20777125 20779381 698626 700850 NC_000014.9 scf7180000172778 98.08 True fake: scaffold gap size wrong estimation (local) 20779619 20780604 701069 702054 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 20780798 20783008 702282 704493 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 20783550 20785165 705036 706651 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20786164 20787595 707654 709084 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 20787840 20788445 709157 709762 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20788594 20792964 709948 714314 NC_000014.9 scf7180000172778 99.38 True fake: scaffold gap size wrong estimation (local) 20793137 20795569 716424 718854 NC_000014.9 scf7180000172778 99.71 True fake: scaffold gap size wrong estimation (local) 20796197 20796800 719711 720314 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20797052 20798923 720452 722323 NC_000014.9 scf7180000172778 99.84 True fake: scaffold gap size wrong estimation (local) 20799136 20815622 722497 739388 NC_000014.9 scf7180000172778 96.79 True relocation, scaffold gap is present, inconsistency = 42747413 63564162 63564818 740515 741171 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 63567496 63568557 741237 742298 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 63570465 63572206 744041 745782 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 63573084 63573997 746758 747671 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 63575837 63576668 749621 750452 NC_000014.9 scf7180000172778 99.88 True relocation, scaffold gap is present, inconsistency = -10790 63566463 63566967 751037 751541 NC_000014.9 scf7180000172778 100.0 True relocation, scaffold gap is present, inconsistency = -42747888 20819896 20820691 752358 753153 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20822731 20823785 755006 756061 NC_000014.9 scf7180000172778 98.86 True relocation, scaffold gap is present, inconsistency = 40292407 61119168 61133495 759037 773446 NC_000014.9 scf7180000172778 99.53 True fake: scaffold gap size wrong estimation (local) 61134018 61135894 773859 775738 NC_000014.9 scf7180000172778 98.35 True fake: scaffold gap size wrong estimation (local) 61136774 61137651 776643 777520 NC_000014.9 scf7180000172778 98.63 True indel: indel (<= 5bp) 61137826 61138408 777696 778278 NC_000014.9 scf7180000172778 99.14 True fake: scaffold gap size wrong estimation (local) 61139449 61144049 779282 783882 NC_000014.9 scf7180000172778 99.96 True indel: indel (<= 5bp) 61144146 61151686 783978 791621 NC_000014.9 scf7180000172778 98.95 True fake: scaffold gap size wrong estimation (local) 61151901 61159853 791730 799697 NC_000014.9 scf7180000172778 98.83 True fake: scaffold gap size wrong estimation (local) 61160532 61164370 800290 804119 NC_000014.9 scf7180000172778 99.45 True relocation, inconsistency = 40733797 101898168 101899978 804120 805930 NC_000014.9 scf7180000172778 100.0 True relocation, scaffold gap is present, inconsistency = -32969203 68930796 68932330 805951 807485 NC_000014.9 scf7180000172778 100.0 True relocation, inconsistency = -7766209 61166122 61168980 807486 810344 NC_000014.9 scf7180000172778 99.79 True local misassembly 61164385 61165595 810375 811585 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61169210 61173701 811642 816134 NC_000014.9 scf7180000172778 99.82 True fake: scaffold gap size wrong estimation (local) 61173878 61175898 816274 818294 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 61176120 61177048 818608 819536 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61177303 61180923 819688 823318 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 61182140 61188588 824474 830919 NC_000014.9 scf7180000172778 99.77 True fake: scaffold gap size wrong estimation (local) 61188792 61209996 831032 852513 NC_000014.9 scf7180000172778 98.31 True fake: scaffold gap size wrong estimation (local) 61210247 61236385 852695 879128 NC_000014.9 scf7180000172778 99.25 True fake: scaffold gap size wrong estimation (local) 61236720 61237525 879302 880107 NC_000014.9 scf7180000172778 99.5 True fake: scaffold gap size wrong estimation (local) 61237653 61242624 880459 885438 NC_000014.9 scf7180000172778 99.6 True fake: scaffold gap size wrong estimation (local) 61243950 61245650 888667 890367 NC_000014.9 scf7180000172778 99.82 True indel: indel (> 5bp) 61245651 61246236 890383 890968 NC_000014.9 scf7180000172778 99.66 True local misassembly 61246374 61247512 890969 892107 NC_000014.9 scf7180000172778 96.4 True fake: scaffold gap size wrong estimation (local) 61247751 61249525 892413 894183 NC_000014.9 scf7180000172778 99.27 True fake: scaffold gap size wrong estimation (local) 61250214 61252013 894790 896589 NC_000014.9 scf7180000172778 99.78 True fake: scaffold gap size wrong estimation (local) 61252101 61262028 896676 906597 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 61262122 61265995 906704 910559 NC_000014.9 scf7180000172778 99.54 True fake: scaffold gap size wrong estimation (local) 61266361 61271979 910855 916473 NC_000014.9 scf7180000172778 99.95 True fake: scaffold gap size wrong estimation (local) 61272629 61276416 917010 920797 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61276627 61286539 920930 930830 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61287221 61290103 931386 934268 NC_000014.9 scf7180000172778 99.93 True fake: scaffold gap size wrong estimation (local) 61290248 61291334 934434 935520 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61291601 61292562 935625 936584 NC_000014.9 scf7180000172778 99.79 True fake: scaffold gap size wrong estimation (local) 61292777 61294149 936967 938339 NC_000014.9 scf7180000172778 99.93 True fake: scaffold gap size wrong estimation (local) 61294381 61294921 938389 938929 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61295110 61315767 939255 960162 NC_000014.9 scf7180000172778 97.16 True fake: scaffold gap size wrong estimation (local) 61316020 61317515 960693 962188 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 61317516 61318197 962564 963245 NC_000014.9 scf7180000172778 100.0 True local misassembly 61318358 61320437 963246 965325 NC_000014.9 scf7180000172778 98.85 True fake: scaffold gap size wrong estimation (local) 61320587 61327995 965464 972897 NC_000014.9 scf7180000172778 99.77 True fake: scaffold gap size wrong estimation (local) 61328275 61329240 973180 974145 NC_000014.9 scf7180000172778 99.59 True fake: scaffold gap size wrong estimation (local) 61329449 61339448 974274 984287 NC_000014.9 scf7180000172778 99.0 True fake: scaffold gap size wrong estimation (local) 61339646 61352477 984687 997449 NC_000014.9 scf7180000172778 99.4 True indel: indel (<= 5bp) 61352558 61356759 997529 1001698 NC_000014.9 scf7180000172778 99.21 True fake: scaffold gap size wrong estimation (local) 61356954 61367729 1001924 1012864 NC_000014.9 scf7180000172778 98.13 True fake: scaffold gap size wrong estimation (local) 61367988 61395832 1013062 1040964 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61395907 61402537 1041027 1047673 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61402928 61405407 1048038 1050518 NC_000014.9 scf7180000172778 99.96 True fake: scaffold gap size wrong estimation (local) 61405590 61414278 1050652 1059335 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 61414608 61425416 1059632 1070438 NC_000014.9 scf7180000172778 99.8 True fake: scaffold gap size wrong estimation (local) 61425600 61440622 1070590 1086059 NC_000014.9 scf7180000172778 96.71 True fake: scaffold gap size wrong estimation (local) 61441106 61455062 1086495 1100538 NC_000014.9 scf7180000172778 99.2 True fake: scaffold gap size wrong estimation (local) 61455206 61473735 1100717 1119232 NC_000014.9 scf7180000172778 99.76 True fake: scaffold gap size wrong estimation (local) 61473838 61482001 1119319 1127429 NC_000014.9 scf7180000172778 99.19 True fake: scaffold gap size wrong estimation (local) 61482156 61487843 1127973 1133688 NC_000014.9 scf7180000172778 99.59 True fake: scaffold gap size wrong estimation (local) 61488154 61498087 1133925 1143857 NC_000014.9 scf7180000172778 99.69 True fake: scaffold gap size wrong estimation (local) 61498209 61502061 1143979 1147830 NC_000014.9 scf7180000172778 99.66 True fake: scaffold gap size wrong estimation (local) 61502229 61529471 1147991 1176164 NC_000014.9 scf7180000172778 96.62 True fake: scaffold gap size wrong estimation (local) 61529848 61542042 1176450 1188673 NC_000014.9 scf7180000172778 99.68 True fake: scaffold gap size wrong estimation (local) 61542196 61553570 1188797 1200234 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 61553579 61579507 1200290 1226070 NC_000014.9 scf7180000172778 99.15 True fake: scaffold gap size wrong estimation (local) 61579710 61583982 1226228 1230519 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61584187 61595955 1230664 1242426 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 61596238 61603624 1242600 1249934 NC_000014.9 scf7180000172778 98.76 True fake: scaffold gap size wrong estimation (local) 61603817 61623247 1250134 1269703 NC_000014.9 scf7180000172778 99.2 True fake: scaffold gap size wrong estimation (local) 61623418 61624292 1269823 1270697 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61624472 61639515 1271017 1286056 NC_000014.9 scf7180000172778 99.89 True fake: not a misassembly (possible transposable element) 57150974 57152292 1286077 1287395 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 61640019 61649949 1287396 1297331 NC_000014.9 scf7180000172778 99.79 True fake: not a misassembly (possible transposable element) 97783210 97784622 1298979 1297567 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 61650130 61655053 1299000 1303931 NC_000014.9 scf7180000172778 99.72 True fake: scaffold gap size wrong estimation (local) 61655231 61657734 1304107 1306610 NC_000014.9 scf7180000172778 99.72 True fake: scaffold gap size wrong estimation (local) 61658612 61661098 1307423 1309908 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 61661262 61666693 1310210 1315605 NC_000014.9 scf7180000172778 98.82 True fake: scaffold gap size wrong estimation (local) 61666887 61670113 1315741 1318966 NC_000014.9 scf7180000172778 99.75 True fake: scaffold gap size wrong estimation (local) 61670210 61672424 1319065 1321278 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 61672723 61680132 1321583 1328896 NC_000014.9 scf7180000172778 98.53 True fake: scaffold gap size wrong estimation (local) 61680370 61685014 1329153 1333797 NC_000014.9 scf7180000172778 99.89 True fake: scaffold gap size wrong estimation (local) 61685169 61686183 1333890 1334904 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 61686310 61688272 1335016 1336978 NC_000014.9 scf7180000172778 99.8 True fake: scaffold gap size wrong estimation (local) 61688571 61689697 1337156 1338282 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61689828 61702274 1338488 1350807 NC_000014.9 scf7180000172778 98.88 True fake: scaffold gap size wrong estimation (local) 61702522 61707313 1351052 1355854 NC_000014.9 scf7180000172778 99.75 True fake: scaffold gap size wrong estimation (local) 61709162 61710806 1357594 1359238 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 61711051 61714860 1359382 1363306 NC_000014.9 scf7180000172778 99.95 True fake: scaffold gap size wrong estimation (local) 61714976 61729381 1363386 1377685 NC_000014.9 scf7180000172778 98.83 True indel: stretch of mismatches 61729487 61737770 1377791 1386121 NC_000014.9 scf7180000172778 99.63 True fake: scaffold gap size wrong estimation (local) 61738000 61740083 1387648 1389731 NC_000014.9 scf7180000172778 99.9 True fake: scaffold gap size wrong estimation (local) 61740274 61742888 1389847 1392363 NC_000014.9 scf7180000172778 96.05 True fake: scaffold gap size wrong estimation (local) 61743232 61745259 1392647 1394674 NC_000014.9 scf7180000172778 99.55 True indel: stretch of mismatches 61745320 61746019 1394735 1395434 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 61746414 61756874 1395770 1406188 NC_000014.9 scf7180000172778 98.66 True fake: scaffold gap size wrong estimation (local) 61757147 61758941 1406409 1408203 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61759015 61760426 1408422 1409833 NC_000014.9 scf7180000172778 99.93 True fake: scaffold gap size wrong estimation (local) 61760525 61762997 1409992 1412437 NC_000014.9 scf7180000172778 98.45 True fake: scaffold gap size wrong estimation (local) 61763502 61765519 1412892 1414841 NC_000014.9 scf7180000172778 96.5 True fake: not a misassembly (possible transposable element) 71512998 71514017 1415904 1414885 NC_000014.9 scf7180000172778 99.81 True fake: not a misassembly (possible transposable element) 61765485 61767476 1415905 1417896 NC_000014.9 scf7180000172778 99.95 True fake: scaffold gap size wrong estimation (local) 61768024 61769249 1418396 1419619 NC_000014.9 scf7180000172778 99.76 True fake: scaffold gap size wrong estimation (local) 61769518 61773416 1419717 1423638 NC_000014.9 scf7180000172778 99.74 True fake: scaffold gap size wrong estimation (local) 61773945 61774651 1424088 1424811 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 61774793 61779720 1425038 1429955 NC_000014.9 scf7180000172778 99.35 True fake: scaffold gap size wrong estimation (local) 61779989 61782719 1430476 1433248 NC_000014.9 scf7180000172778 99.56 True fake: scaffold gap size wrong estimation (local) 61783749 61789059 1434212 1439540 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 61789232 61793425 1439729 1443893 NC_000014.9 scf7180000172778 95.06 True fake: scaffold gap size wrong estimation (local) 61793817 61796991 1444289 1447455 NC_000014.9 scf7180000172778 99.1 True fake: scaffold gap size wrong estimation (local) 61797385 61799519 1447863 1449997 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 61800091 61807149 1450527 1457640 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 61807400 61816757 1457795 1466993 NC_000014.9 scf7180000172778 97.68 True fake: scaffold gap size wrong estimation (local) 61817010 61818416 1467157 1468569 NC_000014.9 scf7180000172778 97.68 True fake: scaffold gap size wrong estimation (local) 61818692 61820472 1468817 1470597 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 61820608 61824378 1470683 1474343 NC_000014.9 scf7180000172778 96.58 True fake: not a misassembly (possible transposable element) 40813431 40814964 1474434 1475967 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 61824594 61829680 1475988 1481073 NC_000014.9 scf7180000172778 99.96 True fake: scaffold gap size wrong estimation (local) 61829926 61833310 1481250 1484634 NC_000014.9 scf7180000172778 99.7 True fake: scaffold gap size wrong estimation (local) 61835532 61842588 1486866 1493941 NC_000014.9 scf7180000172778 99.86 True fake: not a misassembly (possible transposable element) 52965886 52966434 1493962 1494510 NC_000014.9 scf7180000172778 99.82 True fake: not a misassembly (possible transposable element) 61842976 61844545 1494511 1496080 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 61845475 61846219 1497288 1498032 NC_000014.9 scf7180000172778 99.6 True fake: scaffold gap size wrong estimation (local) 61846123 61847623 1498495 1499995 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 61848427 61849740 1500672 1501985 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 61850341 61851273 1502733 1503665 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61851468 61853009 1503903 1505444 NC_000014.9 scf7180000172778 99.74 True fake: scaffold gap size wrong estimation (local) 61853178 61858838 1505633 1511288 NC_000014.9 scf7180000172778 99.89 True fake: scaffold gap size wrong estimation (local) 61859135 61886088 1511605 1538584 NC_000014.9 scf7180000172778 99.93 True fake: scaffold gap size wrong estimation (local) 61886279 61886872 1539060 1539653 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 61887287 61888138 1539937 1540788 NC_000014.9 scf7180000172778 99.88 True fake: scaffold gap size wrong estimation (local) 61888291 61910242 1541396 1563663 NC_000014.9 scf7180000172778 97.24 True fake: scaffold gap size wrong estimation (local) 61910804 61922858 1564161 1576272 NC_000014.9 scf7180000172778 99.38 True fake: scaffold gap size wrong estimation (local) 61923054 61938875 1576454 1592293 NC_000014.9 scf7180000172778 99.82 True fake: scaffold gap size wrong estimation (local) 61939090 61943940 1592490 1597365 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 61946033 61955647 1599199 1608792 NC_000014.9 scf7180000172778 99.73 True indel: indel (> 5bp) 61955716 61989367 1608913 1642434 NC_000014.9 scf7180000172778 99.49 True fake: scaffold gap size wrong estimation (local) 61989534 62016468 1642525 1669409 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 62016631 62018300 1669590 1671259 NC_000014.9 scf7180000172778 99.94 True fake: scaffold gap size wrong estimation (local) 62018527 62042337 1671444 1695415 NC_000014.9 scf7180000172778 99.24 True fake: scaffold gap size wrong estimation (local) 62043681 62044948 1696659 1697925 NC_000014.9 scf7180000172778 99.84 True relocation, scaffold gap is present, inconsistency = -41227307 20817776 20819675 1698060 1699959 NC_000014.9 scf7180000172778 99.95 True fake: scaffold gap size wrong estimation (local) 20820307 20822693 1700552 1703053 NC_000014.9 scf7180000172778 95.93 True fake: scaffold gap size wrong estimation (local) 20824305 20825242 1704736 1705673 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 30967642 30968369 1708126 1707399 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 20826103 20828651 1708147 1710807 NC_000014.9 scf7180000172778 99.57 True fake: scaffold gap size wrong estimation (local) 20828943 20837695 1711091 1719693 NC_000014.9 scf7180000172778 98.16 True fake: scaffold gap size wrong estimation (local) 20837750 20838373 1719993 1720616 NC_000014.9 scf7180000172778 99.52 True fake: scaffold gap size wrong estimation (local) 20838751 20839932 1720767 1721948 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20840719 20841878 1722937 1724096 NC_000014.9 scf7180000172778 99.83 True fake: scaffold gap size wrong estimation (local) 20842091 20843360 1724228 1725497 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 20844451 20847010 1727220 1729779 NC_000014.9 scf7180000172778 99.84 True fake: scaffold gap size wrong estimation (local) 20847517 20851123 1730218 1733824 NC_000014.9 scf7180000172778 99.64 True fake: scaffold gap size wrong estimation (local) 20851295 20851798 1735296 1735799 NC_000014.9 scf7180000172778 100.0 True local misassembly 20852206 20860156 1736069 1744001 NC_000014.9 scf7180000172778 99.47 True relocation, scaffold gap is present, inconsistency = 43023668 63883875 63884801 1744052 1744978 NC_000014.9 scf7180000172778 99.89 True relocation, inconsistency = 2777756 61098671 61106118 1752455 1744979 NC_000014.9 scf7180000172778 99.73 True fake: scaffold gap size wrong estimation (local) 61096964 61098189 1754418 1753193 NC_000014.9 scf7180000172778 99.18 True relocation, scaffold gap is present, inconsistency = 40225049 20865918 20868628 1757705 1760312 NC_000014.9 scf7180000172778 95.73 True fake: scaffold gap size wrong estimation (local) 20868787 20870063 1760641 1761917 NC_000014.9 scf7180000172778 99.77 True fake: scaffold gap size wrong estimation (local) 20871880 20872567 1763798 1764485 NC_000014.9 scf7180000172778 99.85 True local misassembly 20870179 20871747 1764537 1766105 NC_000014.9 scf7180000172778 99.81 True relocation, scaffold gap is present, inconsistency = 22698 20895512 20896186 1767172 1767838 NC_000014.9 scf7180000172778 97.64 True local misassembly 20898842 20899620 1770070 1770850 NC_000014.9 scf7180000172778 96.67 True fake: scaffold gap size wrong estimation (local) 20904072 20909354 1775588 1780822 NC_000014.9 scf7180000172778 98.9 True relocation, scaffold gap is present, inconsistency = 27935 20937340 20937846 1780873 1781379 NC_000014.9 scf7180000172778 99.8 True local misassembly 20936366 20936914 1781744 1782292 NC_000014.9 scf7180000172778 99.82 True relocation, scaffold gap is present, inconsistency = -27154 20910253 20911053 1782785 1783585 NC_000014.9 scf7180000172778 95.01 True fake: scaffold gap size wrong estimation (local) 20916653 20917177 1785499 1786023 NC_000014.9 scf7180000172778 99.81 True relocation, scaffold gap is present, inconsistency = 20757 20937985 20940534 1786074 1788623 NC_000014.9 scf7180000172778 99.96 True relocation, scaffold gap is present, inconsistency = -49366 20891219 20891740 1788674 1789195 NC_000014.9 scf7180000172778 100.0 True relocation, inconsistency = 27951 20919757 20920371 1789261 1789875 NC_000014.9 scf7180000172778 98.05 True fake: scaffold gap size wrong estimation (local) 20921836 20924252 1791593 1794005 NC_000014.9 scf7180000172778 97.23 True relocation, scaffold gap is present, inconsistency = -28623 20896434 20897893 1794810 1796269 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 20897840 20898644 1797069 1797873 NC_000014.9 scf7180000172778 99.88 True fake: not a misassembly (possible transposable element) 20942517 20943537 1797924 1798944 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 20899980 20902849 1799369 1802215 NC_000014.9 scf7180000172778 96.83 True relocation, inconsistency = 28151 20931001 20931728 1802216 1802937 NC_000014.9 scf7180000172778 97.78 True indel: indel (<= 5bp) 20932119 20932874 1803326 1804078 NC_000014.9 scf7180000172778 99.47 True fake: not a misassembly (possible transposable element) 20872584 20873686 1804336 1805438 NC_000014.9 scf7180000172778 99.18 True fake: not a misassembly (possible transposable element) 20934216 20935033 1805439 1806256 NC_000014.9 scf7180000172778 100.0 True fake: not a misassembly (possible transposable element) 20877062 20881170 1809530 1813638 NC_000014.9 scf7180000172778 99.05 True fake: not a misassembly (possible transposable element) 20947239 20951629 1815392 1819665 NC_000014.9 scf7180000172778 96.29 True relocation, scaffold gap is present, inconsistency = -64433 20887856 20888998 1820325 1821466 NC_000014.9 scf7180000172778 97.3 True fake: scaffold gap size wrong estimation (local) 20889311 20890267 1821781 1822706 NC_000014.9 scf7180000172778 95.93 True indel: indel (<= 5bp) 20890387 20891434 1822831 1823913 NC_000014.9 scf7180000172778 95.2 True indel: stretch of mismatches 20891651 20892556 1824130 1825035 NC_000014.9 scf7180000172778 99.78 True relocation, scaffold gap is present, inconsistency = 60903 20953908 20954628 1825484 1826204 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 20956814 20957886 1827729 1828801 NC_000014.9 scf7180000172778 99.91 True fake: scaffold gap size wrong estimation (local) 20959348 20961273 1830163 1832088 NC_000014.9 scf7180000172778 100.0 True fake: scaffold gap size wrong estimation (local) 20961396 20965758 1832217 1836579 NC_000014.9 scf7180000172778 99.63 True fake: scaffold gap size wrong estimation (local) 20965889 20969967 1836692 1840749 NC_000014.9 scf7180000172778 99.38 True fake: scaffold gap size wrong estimation (local) 20970234 20973212 1841016 1843993 NC_000014.9 scf7180000172778 99.87 True fake: scaffold gap size wrong estimation (local) 20973364 20974853 1844128 1845611 NC_000014.9 scf7180000172778 99.46 True fake: scaffold gap size wrong estimation (local) 20975178 20981341 1845897 1852009 NC_000014.9 scf7180000172778 98.1 True fake: scaffold gap size wrong estimation (local) 20981539 20993525 1852139 1864184 NC_000014.9 scf7180000172778 99.56 True fake: scaffold gap size wrong estimation (local) 20993753 21006236 1864409 1876961 NC_000014.9 scf7180000172778 99.86 True fake: scaffold gap size wrong estimation (local) 21008264 21008892 1878584 1879212 NC_000014.9 scf7180000172778 97.14 True fake: scaffold gap size wrong estimation (local) 21008893 21010152 1879569 1880828 NC_000014.9 scf7180000172778 99.92 True fake: scaffold gap size wrong estimation (local) 21010587 21020096 1881245 1890729 NC_000014.9 scf7180000172778 99.41 True fake: scaffold gap size wrong estimation (local) 21020187 21057205 1890837 1928046 NC_000014.9 scf7180000172778 99.46 True fake: scaffold gap size wrong estimation (local) 21057388 21062733 1928155 1933511 NC_000014.9 scf7180000172778 99.53 True CONTIG scf7180000172778 1933511 misassembled 77960549 77962196 1647 1 NC_000014.9 scf7180000172779 99.76 True fake: not a misassembly (possible transposable element) 86774427 86775287 3038 2178 NC_000014.9 scf7180000172779 98.88 True fake: not a misassembly (possible transposable element) 77958432 77959976 4583 3039 NC_000014.9 scf7180000172779 98.77 True fake: scaffold gap size wrong estimation (local) 77955655 77957801 7432 5286 NC_000014.9 scf7180000172779 99.02 True indel: indel (> 5bp) 77953350 77955634 9717 7433 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 77952463 77953349 11397 10511 NC_000014.9 scf7180000172779 99.66 True fake: scaffold gap size wrong estimation (local) 77951290 77952214 12393 11469 NC_000014.9 scf7180000172779 99.14 True indel: indel (<= 5bp) 77948402 77951288 15280 12394 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 77942807 77948134 20956 15629 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 77921337 77942940 42748 21356 NC_000014.9 scf7180000172779 98.64 True fake: scaffold gap size wrong estimation (local) 77909296 77921088 54793 42899 NC_000014.9 scf7180000172779 99.2 True fake: scaffold gap size wrong estimation (local) 77901100 77909134 62775 54980 NC_000014.9 scf7180000172779 96.49 True fake: scaffold gap size wrong estimation (local) 77899900 77900405 63822 63316 NC_000014.9 scf7180000172779 99.41 True local misassembly 77900471 77901060 64432 63843 NC_000014.9 scf7180000172779 99.66 True fake: scaffold gap size wrong estimation (local) 77893911 77899819 70925 65097 NC_000014.9 scf7180000172779 98.44 True fake: scaffold gap size wrong estimation (local) 77889891 77893752 75306 71445 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 77886920 77888816 78914 77018 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 77877183 77886675 88922 79408 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 77869114 77877098 97014 89048 NC_000014.9 scf7180000172779 99.57 True fake: scaffold gap size wrong estimation (local) 77865260 77869237 101400 97423 NC_000014.9 scf7180000172779 99.85 True fake: not a misassembly (possible transposable element) 94717274 94718101 102256 101429 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 77858481 77865025 108731 102257 NC_000014.9 scf7180000172779 98.79 True fake: scaffold gap size wrong estimation (local) 77852956 77858316 114269 108881 NC_000014.9 scf7180000172779 99.5 True fake: scaffold gap size wrong estimation (local) 77850878 77852029 116277 115150 NC_000014.9 scf7180000172779 97.61 True fake: scaffold gap size wrong estimation (local) 77849118 77850665 118088 116541 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 77842895 77848838 124317 118353 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 77839947 77841665 127206 125488 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 77835771 77836772 133516 132515 NC_000014.9 scf7180000172779 96.11 True indel: indel (> 5bp) 77831725 77835707 137499 133517 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 77829542 77831724 140698 138516 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 77828716 77829306 141989 141399 NC_000014.9 scf7180000172779 96.45 True local misassembly 77828100 77828621 142511 141990 NC_000014.9 scf7180000172779 95.98 True fake: scaffold gap size wrong estimation (local) 77824710 77827097 145888 143574 NC_000014.9 scf7180000172779 96.75 True fake: scaffold gap size wrong estimation (local) 77817963 77824445 152973 146384 NC_000014.9 scf7180000172779 96.64 True fake: scaffold gap size wrong estimation (local) 77815896 77817764 155183 153315 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 77814175 77814695 156910 156390 NC_000014.9 scf7180000172779 95.97 True fake: scaffold gap size wrong estimation (local) 77810759 77813082 160231 157908 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 77810038 77810557 161051 160532 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77808793 77809900 162183 161076 NC_000014.9 scf7180000172779 97.83 True local misassembly 77807709 77808630 163105 162184 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77806089 77807009 164808 163888 NC_000014.9 scf7180000172779 97.72 True local misassembly 77805327 77805990 165472 164809 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 77802928 77805007 167993 165914 NC_000014.9 scf7180000172779 99.95 True fake: scaffold gap size wrong estimation (local) 77801910 77802502 168990 168398 NC_000014.9 scf7180000172779 99.49 True fake: scaffold gap size wrong estimation (local) 77799746 77801703 171137 169180 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 77798945 77799521 172146 171570 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77797634 77798615 173792 172811 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 77796398 77797505 174998 173891 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 77795450 77796216 176325 175559 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 77794010 77795318 177882 176574 NC_000014.9 scf7180000172779 99.54 True fake: scaffold gap size wrong estimation (local) 77791284 77792066 181107 180325 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77785170 77787230 186529 184469 NC_000014.9 scf7180000172779 98.93 True indel: indel (> 5bp) 77784121 77785169 187654 186606 NC_000014.9 scf7180000172779 99.71 True fake: scaffold gap size wrong estimation (local) 77782301 77783360 189193 188156 NC_000014.9 scf7180000172779 97.88 True fake: scaffold gap size wrong estimation (local) 77779320 77780171 191199 190348 NC_000014.9 scf7180000172779 99.65 True local misassembly 77780633 77781489 192410 191554 NC_000014.9 scf7180000172779 99.77 True fake: scaffold gap size wrong estimation (local) 77777200 77777753 193606 193053 NC_000014.9 scf7180000172779 100.0 True local misassembly 77778120 77779079 194587 193628 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77774709 77775709 195958 194961 NC_000014.9 scf7180000172779 99.7 True local misassembly 77775813 77776622 196841 196032 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 77772256 77772858 198484 197882 NC_000014.9 scf7180000172779 100.0 True relocation, scaffold gap is present, inconsistency = 13321934 91097733 91098245 201425 201937 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91100074 91101998 203802 205635 NC_000014.9 scf7180000172779 95.22 True fake: scaffold gap size wrong estimation (local) 91102969 91104072 207003 208106 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91104337 91106535 208621 210811 NC_000014.9 scf7180000172779 99.26 True fake: scaffold gap size wrong estimation (local) 91106707 91107330 210940 211563 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 91107505 91108511 211726 212732 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 91108709 91111224 213008 215450 NC_000014.9 scf7180000172779 97.0 True fake: scaffold gap size wrong estimation (local) 91112217 91112995 216531 217309 NC_000014.9 scf7180000172779 97.43 True local misassembly 91113142 91115470 217310 219638 NC_000014.9 scf7180000172779 99.1 True indel: indel (> 5bp) 91115477 91116779 219639 220941 NC_000014.9 scf7180000172779 98.31 True fake: scaffold gap size wrong estimation (local) 91116943 91121485 221092 225479 NC_000014.9 scf7180000172779 96.31 True fake: scaffold gap size wrong estimation (local) 91122890 91123955 227309 228376 NC_000014.9 scf7180000172779 99.63 True fake: scaffold gap size wrong estimation (local) 91124196 91127069 228851 231725 NC_000014.9 scf7180000172779 99.34 True fake: scaffold gap size wrong estimation (local) 91128313 91129577 232881 234145 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 67071532 67074270 236920 234182 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 91133252 91135390 238551 240689 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 91137600 91138301 241996 242697 NC_000014.9 scf7180000172779 97.01 True fake: scaffold gap size wrong estimation (local) 91139599 91141568 244166 246234 NC_000014.9 scf7180000172779 96.1 True fake: scaffold gap size wrong estimation (local) 91141943 91142790 246659 247506 NC_000014.9 scf7180000172779 99.76 True fake: scaffold gap size wrong estimation (local) 91143267 91147947 247875 252555 NC_000014.9 scf7180000172779 99.98 True fake: scaffold gap size wrong estimation (local) 91148454 91149021 252933 253500 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91149182 91149958 253773 254549 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91150229 91151308 254795 255874 NC_000014.9 scf7180000172779 100.0 True local misassembly 91151724 91153348 255875 257499 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 91153349 91153926 257637 258214 NC_000014.9 scf7180000172779 99.31 True indel: indel (> 5bp) 91153980 91155797 258215 260032 NC_000014.9 scf7180000172779 98.73 True fake: scaffold gap size wrong estimation (local) 91156289 91157063 260539 261313 NC_000014.9 scf7180000172779 100.0 True local misassembly 91157268 91158831 261378 262941 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91159085 91162655 263401 267085 NC_000014.9 scf7180000172779 98.45 True fake: scaffold gap size wrong estimation (local) 91163270 91163991 267470 268191 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91164191 91166562 268476 270847 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 91167141 91168338 271432 272629 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91169689 91176663 273976 280974 NC_000014.9 scf7180000172779 99.33 True fake: scaffold gap size wrong estimation (local) 91176793 91178869 281107 283202 NC_000014.9 scf7180000172779 98.94 True fake: scaffold gap size wrong estimation (local) 91178872 91179572 283524 284224 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91180573 91181646 284686 285759 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91183271 91184516 287010 288255 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91185324 91187016 289209 290880 NC_000014.9 scf7180000172779 98.45 True fake: scaffold gap size wrong estimation (local) 91187221 91189996 291484 294271 NC_000014.9 scf7180000172779 99.75 True fake: scaffold gap size wrong estimation (local) 91190260 91193659 294515 297914 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91193836 91195720 298113 299950 NC_000014.9 scf7180000172779 95.89 True fake: scaffold gap size wrong estimation (local) 91195882 91197153 300130 301423 NC_000014.9 scf7180000172779 99.69 True fake: scaffold gap size wrong estimation (local) 91197334 91198134 301565 302365 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91198572 91199290 302771 303489 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91199486 91205796 303733 310076 NC_000014.9 scf7180000172779 97.66 True fake: scaffold gap size wrong estimation (local) 91206656 91207752 311287 312404 NC_000014.9 scf7180000172779 99.54 True fake: scaffold gap size wrong estimation (local) 91207932 91208548 312537 313153 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91210193 91212583 314667 317026 NC_000014.9 scf7180000172779 98.61 True fake: scaffold gap size wrong estimation (local) 91213180 91214936 317566 319359 NC_000014.9 scf7180000172779 98.42 True fake: scaffold gap size wrong estimation (local) 91215137 91217628 319625 322279 NC_000014.9 scf7180000172779 95.07 True fake: scaffold gap size wrong estimation (local) 91217761 91235585 322491 340168 NC_000014.9 scf7180000172779 98.88 True fake: scaffold gap size wrong estimation (local) 91235705 91236984 340275 341580 NC_000014.9 scf7180000172779 99.46 True fake: scaffold gap size wrong estimation (local) 91237128 91251374 341714 356056 NC_000014.9 scf7180000172779 97.32 True fake: scaffold gap size wrong estimation (local) 91251615 91252342 356145 356872 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91252599 91256404 357191 360996 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91256579 91259415 361158 363994 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 91259581 91260578 364135 365132 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91261970 91266431 366408 370881 NC_000014.9 scf7180000172779 99.98 True fake: scaffold gap size wrong estimation (local) 91267431 91268849 371852 373270 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 91270495 91275833 374908 380133 NC_000014.9 scf7180000172779 97.7 True fake: scaffold gap size wrong estimation (local) 91276045 91305015 380273 409027 NC_000014.9 scf7180000172779 98.94 True fake: scaffold gap size wrong estimation (local) 91305187 91309051 409162 413026 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 91309611 91311956 414074 416419 NC_000014.9 scf7180000172779 99.74 True fake: scaffold gap size wrong estimation (local) 91312506 91319833 417192 424500 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 91320052 91344528 424845 449658 NC_000014.9 scf7180000172779 98.42 True fake: scaffold gap size wrong estimation (local) 91345383 91346646 450432 451695 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 91346825 91347509 452081 452765 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 91348334 91359165 453528 464387 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 91359351 91362031 464495 467172 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 91362932 91369268 467992 474351 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 91369452 91389656 474472 494658 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 91390075 91391564 495066 496573 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91391755 91399583 496761 504579 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 91399855 91401237 504830 506212 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 91401558 91404708 506534 509757 NC_000014.9 scf7180000172779 98.28 True fake: scaffold gap size wrong estimation (local) 91404980 91407878 509935 512833 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91408050 91411763 513014 516704 NC_000014.9 scf7180000172779 98.67 True fake: scaffold gap size wrong estimation (local) 91412696 91415502 517528 520334 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 91415689 91419931 520530 524737 NC_000014.9 scf7180000172779 99.03 True fake: scaffold gap size wrong estimation (local) 91420196 91422908 525176 527778 NC_000014.9 scf7180000172779 95.59 True fake: scaffold gap size wrong estimation (local) 91423677 91430555 528713 535468 NC_000014.9 scf7180000172779 97.66 True fake: scaffold gap size wrong estimation (local) 91436689 91437761 543276 544349 NC_000014.9 scf7180000172779 99.07 True fake: scaffold gap size wrong estimation (local) 91437985 91439022 544810 545847 NC_000014.9 scf7180000172779 98.84 True fake: scaffold gap size wrong estimation (local) 91439023 91440115 546137 547229 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91441926 91446987 549536 554506 NC_000014.9 scf7180000172779 97.88 True fake: scaffold gap size wrong estimation (local) 91447668 91448318 555380 556030 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 91448912 91449515 556330 556933 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91450938 91456529 558481 564043 NC_000014.9 scf7180000172779 99.32 True fake: not a misassembly (possible transposable element) 30552995 30553506 564044 564555 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 91456456 91460046 564578 568186 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 91460892 91463134 568974 571215 NC_000014.9 scf7180000172779 99.73 True fake: scaffold gap size wrong estimation (local) 91463327 91468460 571347 576474 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 91468692 91471810 576745 579865 NC_000014.9 scf7180000172779 99.97 True fake: scaffold gap size wrong estimation (local) 91472685 91473877 580725 581917 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91474041 91486663 582086 594701 NC_000014.9 scf7180000172779 99.44 True fake: scaffold gap size wrong estimation (local) 91487265 91488925 595240 596900 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 91489147 91490888 597137 598878 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 91491680 91495325 599677 603198 NC_000014.9 scf7180000172779 95.33 True fake: scaffold gap size wrong estimation (local) 91495733 91498701 603641 606554 NC_000014.9 scf7180000172779 97.93 True fake: scaffold gap size wrong estimation (local) 91499002 91499612 606904 607514 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 91501987 91503671 609713 611397 NC_000014.9 scf7180000172779 99.94 True fake: not a misassembly (possible transposable element) 89403473 89404427 611418 612372 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 91504526 91505449 612373 613296 NC_000014.9 scf7180000172779 99.68 True relocation, scaffold gap is present, inconsistency = -2100122 89405348 89406402 613317 614371 NC_000014.9 scf7180000172779 99.53 True fake: scaffold gap size wrong estimation (local) 89407002 89408320 615479 616797 NC_000014.9 scf7180000172779 99.85 True local misassembly 89408477 89409351 616798 617672 NC_000014.9 scf7180000172779 95.2 True indel: indel (<= 5bp) 89409352 89411886 617674 620208 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 89411887 89412777 620252 621142 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 89412778 89413669 621162 622053 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 89414826 89421160 623724 630019 NC_000014.9 scf7180000172779 99.09 True fake: scaffold gap size wrong estimation (local) 89421677 89425053 630476 633852 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 89425344 89426998 634135 635777 NC_000014.9 scf7180000172779 98.89 True fake: scaffold gap size wrong estimation (local) 89427537 89431386 636297 640146 NC_000014.9 scf7180000172779 99.97 True fake: scaffold gap size wrong estimation (local) 89431986 89433151 640756 641921 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 89434233 89436931 643023 645790 NC_000014.9 scf7180000172779 98.93 True fake: scaffold gap size wrong estimation (local) 89437141 89438786 645968 647613 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 89439026 89439804 647776 648558 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89439917 89441933 648716 650732 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 89442191 89443755 650982 652546 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 89444008 89446087 652817 654896 NC_000014.9 scf7180000172779 99.57 True fake: scaffold gap size wrong estimation (local) 89446433 89446991 655236 655794 NC_000014.9 scf7180000172779 99.64 True fake: scaffold gap size wrong estimation (local) 89447165 89447818 655998 656651 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89448080 89450596 656817 659332 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 89450749 89453129 659522 661902 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 89453603 89454102 662047 662546 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 89454232 89455940 662610 664318 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 89456201 89457759 664635 666197 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 89458046 89460950 666429 669333 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 89461260 89462753 669613 671106 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 89463274 89463784 671715 672225 NC_000014.9 scf7180000172779 100.0 True local misassembly 89463966 89465134 672314 673482 NC_000014.9 scf7180000172779 97.35 True fake: scaffold gap size wrong estimation (local) 89465401 89467812 673819 676230 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 89467822 89471368 676358 679831 NC_000014.9 scf7180000172779 97.65 True fake: scaffold gap size wrong estimation (local) 89473617 89474835 683269 684487 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89475481 89478742 685038 688299 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 89478941 89480183 688447 689689 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 89480387 89482682 689952 692248 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 89483681 89505445 693170 714860 NC_000014.9 scf7180000172779 99.12 True fake: scaffold gap size wrong estimation (local) 89507136 89509408 716494 718762 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 89509603 89510884 719100 720381 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 89511883 89513024 721592 722733 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 89515701 89516575 725020 725894 NC_000014.9 scf7180000172779 99.43 True fake: scaffold gap size wrong estimation (local) 89517293 89523799 726713 733189 NC_000014.9 scf7180000172779 98.65 True fake: scaffold gap size wrong estimation (local) 89524405 89527719 733698 737020 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 89527809 89528385 737074 737650 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 89528639 89529930 737933 739224 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89530988 89533523 740307 742794 NC_000014.9 scf7180000172779 98.03 True fake: scaffold gap size wrong estimation (local) 89533688 89536523 742975 745790 NC_000014.9 scf7180000172779 99.21 True fake: scaffold gap size wrong estimation (local) 89536709 89538917 745970 748177 NC_000014.9 scf7180000172779 99.32 True fake: scaffold gap size wrong estimation (local) 89539102 89546328 748328 755525 NC_000014.9 scf7180000172779 99.46 True fake: scaffold gap size wrong estimation (local) 89547375 89548924 756418 757967 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89549064 89556193 757994 765244 NC_000014.9 scf7180000172779 99.36 True fake: scaffold gap size wrong estimation (local) 89556324 89562353 765343 771360 NC_000014.9 scf7180000172779 98.55 True fake: scaffold gap size wrong estimation (local) 89562484 89563958 771489 772963 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 89564091 89567504 773102 776526 NC_000014.9 scf7180000172779 99.71 True fake: scaffold gap size wrong estimation (local) 89567984 89568942 777004 777962 NC_000014.9 scf7180000172779 99.69 True fake: scaffold gap size wrong estimation (local) 89569153 89570030 778128 779005 NC_000014.9 scf7180000172779 99.54 True fake: scaffold gap size wrong estimation (local) 89570620 89578913 779699 788151 NC_000014.9 scf7180000172779 96.17 True fake: scaffold gap size wrong estimation (local) 89579167 89581031 788404 790267 NC_000014.9 scf7180000172779 99.73 True fake: scaffold gap size wrong estimation (local) 89581487 89587676 790784 796918 NC_000014.9 scf7180000172779 98.66 True fake: scaffold gap size wrong estimation (local) 89587875 89595059 797030 804214 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 89595278 89602524 804412 811610 NC_000014.9 scf7180000172779 99.29 True fake: scaffold gap size wrong estimation (local) 89602766 89607335 811822 816396 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 89608403 89611549 817510 820656 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 89611808 89612957 820893 822042 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 89613118 89632675 822169 841849 NC_000014.9 scf7180000172779 99.34 True fake: scaffold gap size wrong estimation (local) 89632980 89634524 842010 843554 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 89634718 89638530 843685 847545 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 89638702 89645301 847576 854304 NC_000014.9 scf7180000172779 98.15 True fake: scaffold gap size wrong estimation (local) 89645563 89646310 854693 855440 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89646567 89647388 855477 856298 NC_000014.9 scf7180000172779 99.27 True fake: scaffold gap size wrong estimation (local) 89647389 89651531 857070 861212 NC_000014.9 scf7180000172779 99.95 True fake: scaffold gap size wrong estimation (local) 89651726 89652930 861361 862565 NC_000014.9 scf7180000172779 99.75 True fake: scaffold gap size wrong estimation (local) 89653132 89654547 862736 864151 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 89654732 89656851 864301 866420 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 89657969 89660791 867277 870262 NC_000014.9 scf7180000172779 98.89 True fake: scaffold gap size wrong estimation (local) 89660990 89663868 870510 873412 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 89664470 89666024 874040 875594 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 89666567 89670611 876041 880053 NC_000014.9 scf7180000172779 99.18 True fake: scaffold gap size wrong estimation (local) 89670754 89676394 880162 885734 NC_000014.9 scf7180000172779 98.31 True fake: scaffold gap size wrong estimation (local) 89676938 89677686 886435 887183 NC_000014.9 scf7180000172779 97.2 True local misassembly 89678317 89679432 887188 888303 NC_000014.9 scf7180000172779 97.94 True fake: scaffold gap size wrong estimation (local) 89679629 89685239 889237 894697 NC_000014.9 scf7180000172779 95.82 True indel: stretch of mismatches 89685282 89689343 894740 898738 NC_000014.9 scf7180000172779 98.14 True fake: scaffold gap size wrong estimation (local) 89689886 89691529 899315 900958 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 89692132 89696654 901544 906051 NC_000014.9 scf7180000172779 98.96 True fake: scaffold gap size wrong estimation (local) 89697700 89705602 907041 914849 NC_000014.9 scf7180000172779 98.14 True fake: scaffold gap size wrong estimation (local) 89705725 89719245 915046 928710 NC_000014.9 scf7180000172779 98.18 True fake: scaffold gap size wrong estimation (local) 89719435 89722459 928843 931867 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89722668 89723595 932077 933004 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89723732 89731181 933124 940565 NC_000014.9 scf7180000172779 99.6 True fake: scaffold gap size wrong estimation (local) 89731608 89733601 940917 942910 NC_000014.9 scf7180000172779 99.85 True indel: indel (<= 5bp) 89733603 89734434 942911 943742 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 89735311 89738570 944485 947664 NC_000014.9 scf7180000172779 97.28 True fake: scaffold gap size wrong estimation (local) 89739096 89740889 948182 949975 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 89741450 89742650 950435 951635 NC_000014.9 scf7180000172779 99.75 True fake: scaffold gap size wrong estimation (local) 89742651 89746137 951961 955447 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 89746138 89748670 955794 958326 NC_000014.9 scf7180000172779 99.68 True indel: indel (> 5bp) 89748742 89752626 958327 962211 NC_000014.9 scf7180000172779 98.82 True indel: indel (<= 5bp) 89752627 89754272 962215 963860 NC_000014.9 scf7180000172779 99.94 True fake: not a misassembly (possible transposable element) 70192708 70193586 963861 964739 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 89754486 89769659 964797 979809 NC_000014.9 scf7180000172779 98.79 True fake: scaffold gap size wrong estimation (local) 89769787 89774525 979960 984746 NC_000014.9 scf7180000172779 99.3 True fake: scaffold gap size wrong estimation (local) 89774670 89776521 984840 986690 NC_000014.9 scf7180000172779 99.68 True fake: scaffold gap size wrong estimation (local) 89776719 89779402 986864 989542 NC_000014.9 scf7180000172779 99.07 True fake: scaffold gap size wrong estimation (local) 89779773 89783129 989895 993252 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 89783262 89788236 993411 998398 NC_000014.9 scf7180000172779 99.16 True fake: scaffold gap size wrong estimation (local) 89789110 89791142 999892 1001924 NC_000014.9 scf7180000172779 99.75 True fake: scaffold gap size wrong estimation (local) 89791396 89794805 1002115 1005524 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 89795280 89797678 1006379 1008738 NC_000014.9 scf7180000172779 97.86 True fake: scaffold gap size wrong estimation (local) 89797905 89799929 1008981 1011005 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 89800112 89800769 1011128 1011785 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89801060 89802212 1012165 1013305 NC_000014.9 scf7180000172779 98.68 True fake: scaffold gap size wrong estimation (local) 89802404 89810548 1013437 1021581 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 89810756 89815480 1021858 1026570 NC_000014.9 scf7180000172779 99.31 True fake: scaffold gap size wrong estimation (local) 89815717 89817739 1026767 1028789 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89817952 89827629 1028957 1038646 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 89827905 89834240 1038896 1045209 NC_000014.9 scf7180000172779 99.4 True fake: scaffold gap size wrong estimation (local) 89834392 89847490 1045397 1058447 NC_000014.9 scf7180000172779 98.98 True fake: scaffold gap size wrong estimation (local) 89847753 89873587 1058631 1084726 NC_000014.9 scf7180000172779 98.3 True fake: scaffold gap size wrong estimation (local) 89873913 89874644 1084975 1085706 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89874942 89881549 1085961 1092567 NC_000014.9 scf7180000172779 99.83 True indel: stretch of mismatches 89881669 89883514 1092687 1094532 NC_000014.9 scf7180000172779 99.73 True fake: not a misassembly (possible transposable element) 19842154 19843173 1095600 1094581 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 89883490 89885520 1095601 1097631 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 89885893 89892703 1097758 1104714 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 89892882 89893779 1104901 1105798 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 89894315 89896112 1106278 1108075 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 89896356 89897221 1108286 1109151 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89897457 89898558 1109301 1110402 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89898683 89904300 1110544 1116160 NC_000014.9 scf7180000172779 99.98 True fake: scaffold gap size wrong estimation (local) 89904843 89918315 1116679 1130080 NC_000014.9 scf7180000172779 99.25 True fake: scaffold gap size wrong estimation (local) 89918543 89925662 1130266 1137373 NC_000014.9 scf7180000172779 99.44 True fake: scaffold gap size wrong estimation (local) 89925845 89927770 1137550 1139475 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 89927988 89928750 1139808 1140570 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 89929472 89935411 1141338 1147277 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 89935929 89937663 1147647 1149381 NC_000014.9 scf7180000172779 96.43 True fake: scaffold gap size wrong estimation (local) 89937664 89938724 1149533 1150593 NC_000014.9 scf7180000172779 100.0 True local misassembly 89938956 89939817 1150594 1151455 NC_000014.9 scf7180000172779 96.17 True fake: scaffold gap size wrong estimation (local) 89940012 89941802 1151829 1153619 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 89942156 89969890 1153910 1182320 NC_000014.9 scf7180000172779 97.5 True fake: scaffold gap size wrong estimation (local) 89970142 89971122 1182561 1183534 NC_000014.9 scf7180000172779 99.27 True fake: scaffold gap size wrong estimation (local) 89972372 89975111 1184646 1187385 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 89975351 89976544 1187561 1188785 NC_000014.9 scf7180000172779 99.09 True fake: scaffold gap size wrong estimation (local) 89976876 89977409 1189251 1189784 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 89977542 89988125 1189940 1200763 NC_000014.9 scf7180000172779 96.87 True fake: scaffold gap size wrong estimation (local) 89987965 90000467 1201140 1213589 NC_000014.9 scf7180000172779 99.34 True fake: scaffold gap size wrong estimation (local) 90000598 90003003 1213707 1216112 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90003204 90006622 1216256 1219674 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90006800 90013786 1219787 1226758 NC_000014.9 scf7180000172779 99.76 True fake: scaffold gap size wrong estimation (local) 90013976 90015801 1226876 1228701 NC_000014.9 scf7180000172779 99.95 True fake: scaffold gap size wrong estimation (local) 90016157 90018569 1229120 1231532 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90018570 90020485 1231929 1233844 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90020979 90026524 1234252 1239797 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 90027163 90029209 1240394 1242440 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90029542 90031059 1242793 1244326 NC_000014.9 scf7180000172779 99.8 True fake: scaffold gap size wrong estimation (local) 90031327 90046592 1244555 1259771 NC_000014.9 scf7180000172779 99.17 True fake: scaffold gap size wrong estimation (local) 90046707 90069038 1259934 1282465 NC_000014.9 scf7180000172779 95.9 True fake: scaffold gap size wrong estimation (local) 90069316 90071732 1282804 1285221 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 90071883 90076971 1285376 1290318 NC_000014.9 scf7180000172779 96.59 True fake: scaffold gap size wrong estimation (local) 90077394 90082155 1290735 1295417 NC_000014.9 scf7180000172779 98.12 True fake: scaffold gap size wrong estimation (local) 90082258 90085001 1295562 1298305 NC_000014.9 scf7180000172779 99.74 True fake: scaffold gap size wrong estimation (local) 90085855 90090547 1298998 1303675 NC_000014.9 scf7180000172779 98.59 True fake: scaffold gap size wrong estimation (local) 90090703 90091955 1303906 1305158 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90092113 90098868 1305276 1311999 NC_000014.9 scf7180000172779 99.3 True fake: scaffold gap size wrong estimation (local) 90098968 90101798 1312165 1314995 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 90101993 90104807 1315072 1317886 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 90105005 90106822 1318266 1320029 NC_000014.9 scf7180000172779 96.83 True fake: scaffold gap size wrong estimation (local) 90107486 90108951 1320770 1322235 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 90110338 90112927 1323562 1326063 NC_000014.9 scf7180000172779 96.42 True fake: scaffold gap size wrong estimation (local) 90113039 90117399 1326210 1330527 NC_000014.9 scf7180000172779 98.83 True fake: scaffold gap size wrong estimation (local) 90117579 90119654 1330767 1332842 NC_000014.9 scf7180000172779 99.76 True fake: scaffold gap size wrong estimation (local) 90119823 90122350 1333010 1335448 NC_000014.9 scf7180000172779 96.25 True fake: scaffold gap size wrong estimation (local) 90123746 90125271 1336864 1338389 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 90126742 90127486 1339874 1340618 NC_000014.9 scf7180000172779 96.51 True fake: scaffold gap size wrong estimation (local) 90127824 90130206 1341123 1343505 NC_000014.9 scf7180000172779 99.5 True fake: scaffold gap size wrong estimation (local) 90131487 90132346 1344812 1345671 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 90132544 90137414 1345784 1350729 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 90137583 90142327 1350865 1355492 NC_000014.9 scf7180000172779 97.44 True fake: scaffold gap size wrong estimation (local) 90142562 90149222 1355904 1362500 NC_000014.9 scf7180000172779 96.23 True fake: scaffold gap size wrong estimation (local) 90149406 90151527 1363002 1365140 NC_000014.9 scf7180000172779 98.96 True fake: not a misassembly (possible transposable element) 42977363 42978879 1365191 1366707 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 90151434 90157714 1366708 1372810 NC_000014.9 scf7180000172779 97.0 True fake: scaffold gap size wrong estimation (local) 90157897 90169991 1372998 1384942 NC_000014.9 scf7180000172779 95.06 True fake: scaffold gap size wrong estimation (local) 90170412 90172217 1384998 1386913 NC_000014.9 scf7180000172779 95.25 True fake: scaffold gap size wrong estimation (local) 90174280 90174858 1389275 1389853 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 90175106 90176778 1390289 1391961 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 90176964 90178232 1392297 1393565 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 90178257 90186259 1393685 1401493 NC_000014.9 scf7180000172779 97.27 True fake: scaffold gap size wrong estimation (local) 90186413 90198614 1401583 1413905 NC_000014.9 scf7180000172779 98.93 True fake: scaffold gap size wrong estimation (local) 90199692 90201935 1414848 1417091 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90202004 90206753 1417113 1422090 NC_000014.9 scf7180000172779 95.7 True fake: scaffold gap size wrong estimation (local) 90212726 90215032 1428831 1431137 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 90215196 90217852 1431287 1433942 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 90218118 90218827 1434232 1434941 NC_000014.9 scf7180000172779 99.44 True indel: indel (> 5bp) 90218889 90219907 1434942 1435960 NC_000014.9 scf7180000172779 97.84 True fake: scaffold gap size wrong estimation (local) 90219908 90220737 1436110 1436939 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90220738 90221686 1436950 1437898 NC_000014.9 scf7180000172779 98.42 True fake: scaffold gap size wrong estimation (local) 90221994 90222501 1438017 1438524 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 90222732 90225315 1438917 1441500 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 90225316 90226106 1441517 1442307 NC_000014.9 scf7180000172779 99.24 True fake: scaffold gap size wrong estimation (local) 90226107 90226845 1442324 1443062 NC_000014.9 scf7180000172779 99.46 True indel: indel (> 5bp) 90226931 90227998 1443063 1444130 NC_000014.9 scf7180000172779 97.66 True fake: scaffold gap size wrong estimation (local) 90227999 90228540 1444381 1444922 NC_000014.9 scf7180000172779 99.82 True relocation, scaffold gap is present, inconsistency = 18762980 71463812 71464602 1446129 1445339 NC_000014.9 scf7180000172779 97.73 True fake: scaffold gap size wrong estimation (local) 71462658 71463328 1447278 1446608 NC_000014.9 scf7180000172779 99.11 True fake: scaffold gap size wrong estimation (local) 71461856 71462657 1448108 1447307 NC_000014.9 scf7180000172779 98.88 True fake: scaffold gap size wrong estimation (local) 71459009 71461855 1451452 1448606 NC_000014.9 scf7180000172779 99.68 True fake: scaffold gap size wrong estimation (local) 71457871 71459008 1452711 1451574 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 71454020 71457406 1456482 1453097 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 71442193 71453783 1468605 1456691 NC_000014.9 scf7180000172779 97.52 True fake: scaffold gap size wrong estimation (local) 71437029 71441941 1474273 1469350 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 71435670 71436782 1475641 1474527 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 71426695 71435378 1484399 1475809 NC_000014.9 scf7180000172779 98.86 True fake: scaffold gap size wrong estimation (local) 71421593 71426591 1489914 1484918 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 71419764 71421406 1491712 1490070 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 71417481 71419482 1494003 1492002 NC_000014.9 scf7180000172779 99.0 True fake: scaffold gap size wrong estimation (local) 71415969 71416720 1495615 1494864 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71414334 71415806 1497712 1496240 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 71404462 71414206 1507664 1497895 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 71403622 71404368 1508501 1507755 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71400007 71403345 1512033 1508695 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 71398190 71400006 1514427 1512611 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 71392745 71398003 1519829 1514531 NC_000014.9 scf7180000172779 99.49 True fake: scaffold gap size wrong estimation (local) 71391367 71392579 1521138 1519926 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 71387274 71391104 1525188 1521358 NC_000014.9 scf7180000172779 99.97 True fake: scaffold gap size wrong estimation (local) 71385944 71387030 1526464 1525378 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 71379497 71385696 1532738 1526665 NC_000014.9 scf7180000172779 97.88 True fake: scaffold gap size wrong estimation (local) 71377891 71379364 1534466 1532994 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 71373855 71377122 1538501 1535233 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 71370415 71373110 1541929 1539203 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 71365021 71367528 1547736 1545103 NC_000014.9 scf7180000172779 95.99 True fake: scaffold gap size wrong estimation (local) 71345914 71364857 1566756 1547757 NC_000014.9 scf7180000172779 99.38 True fake: scaffold gap size wrong estimation (local) 71339561 71345595 1573079 1567044 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 71337817 71338761 1574583 1573639 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71327322 71337913 1585733 1575142 NC_000014.9 scf7180000172779 99.98 True fake: scaffold gap size wrong estimation (local) 71311920 71326237 1600981 1586738 NC_000014.9 scf7180000172779 99.29 True fake: scaffold gap size wrong estimation (local) 71304435 71311670 1608514 1601255 NC_000014.9 scf7180000172779 99.81 True indel: stretch of mismatches 71298736 71304378 1614225 1608571 NC_000014.9 scf7180000172779 99.39 True fake: scaffold gap size wrong estimation (local) 71294598 71298518 1618254 1614396 NC_000014.9 scf7180000172779 98.26 True fake: scaffold gap size wrong estimation (local) 71293391 71294381 1619352 1618362 NC_000014.9 scf7180000172779 99.7 True fake: scaffold gap size wrong estimation (local) 71290844 71293223 1621924 1619545 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 71287778 71290026 1624976 1622728 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 71283322 71287777 1631297 1626842 NC_000014.9 scf7180000172779 99.96 True indel: indel (<= 5bp) 71281738 71283320 1632880 1631298 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 71279633 71281737 1635119 1633015 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71271923 71279526 1642924 1635206 NC_000014.9 scf7180000172779 99.07 True fake: scaffold gap size wrong estimation (local) 71263624 71271814 1651200 1643011 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 71262004 71263246 1652888 1651646 NC_000014.9 scf7180000172779 97.83 True indel: indel (> 5bp) 71260861 71261930 1653958 1652889 NC_000014.9 scf7180000172779 95.33 True local misassembly 71257692 71258913 1655180 1653959 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71255593 71260715 1660270 1655246 NC_000014.9 scf7180000172779 98.03 True fake: scaffold gap size wrong estimation (local) 71252327 71254467 1664195 1662074 NC_000014.9 scf7180000172779 98.97 True fake: scaffold gap size wrong estimation (local) 71249258 71251594 1667126 1664871 NC_000014.9 scf7180000172779 96.33 True fake: scaffold gap size wrong estimation (local) 71239915 71249176 1676570 1667332 NC_000014.9 scf7180000172779 99.61 True fake: scaffold gap size wrong estimation (local) 71238617 71239699 1677877 1676795 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71235630 71236974 1680893 1679549 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 71222614 71235135 1693544 1681111 NC_000014.9 scf7180000172779 96.73 True fake: scaffold gap size wrong estimation (local) 71216134 71222365 1700110 1693889 NC_000014.9 scf7180000172779 98.59 True fake: scaffold gap size wrong estimation (local) 71204027 71216143 1712506 1700184 NC_000014.9 scf7180000172779 95.73 True fake: scaffold gap size wrong estimation (local) 71187173 71203802 1729286 1712701 NC_000014.9 scf7180000172779 99.22 True fake: scaffold gap size wrong estimation (local) 71178569 71187004 1737838 1729440 NC_000014.9 scf7180000172779 99.17 True fake: scaffold gap size wrong estimation (local) 71175406 71178377 1740935 1738075 NC_000014.9 scf7180000172779 96.06 True fake: scaffold gap size wrong estimation (local) 71171011 71175297 1745348 1741067 NC_000014.9 scf7180000172779 99.63 True fake: scaffold gap size wrong estimation (local) 71168204 71170728 1748196 1745651 NC_000014.9 scf7180000172779 99.56 True fake: scaffold gap size wrong estimation (local) 71162937 71167775 1753438 1748600 NC_000014.9 scf7180000172779 99.73 True fake: scaffold gap size wrong estimation (local) 71160675 71162734 1755705 1753645 NC_000014.9 scf7180000172779 99.51 True fake: scaffold gap size wrong estimation (local) 71158000 71158834 1758410 1757576 NC_000014.9 scf7180000172779 99.16 True relocation, scaffold gap is present, inconsistency = 2395791 68751526 68762178 1769139 1758441 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 68744035 68751410 1776574 1769240 NC_000014.9 scf7180000172779 99.26 True fake: scaffold gap size wrong estimation (local) 68740341 68743844 1780203 1776680 NC_000014.9 scf7180000172779 99.77 True fake: scaffold gap size wrong estimation (local) 68724690 68740247 1796401 1780669 NC_000014.9 scf7180000172779 96.55 True fake: scaffold gap size wrong estimation (local) 68718066 68724502 1802987 1796565 NC_000014.9 scf7180000172779 99.55 True fake: scaffold gap size wrong estimation (local) 68701936 68717827 1819398 1803444 NC_000014.9 scf7180000172779 97.95 True fake: scaffold gap size wrong estimation (local) 68700574 68701862 1820784 1819496 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 68688274 68700076 1833213 1821464 NC_000014.9 scf7180000172779 99.09 True fake: scaffold gap size wrong estimation (local) 68687521 68688139 1833943 1833325 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68663375 68687370 1858040 1834074 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 68643331 68663135 1878013 1858285 NC_000014.9 scf7180000172779 99.56 True relocation, inconsistency = 33057495 35585016 35585835 1878014 1878834 NC_000014.9 scf7180000172779 98.35 True relocation, scaffold gap is present, inconsistency = 2299652 37885535 37886240 1879564 1878859 NC_000014.9 scf7180000172779 99.73 True relocation, inconsistency = -30756759 68636591 68642293 1885240 1879565 NC_000014.9 scf7180000172779 99.44 True fake: scaffold gap size wrong estimation (local) 68619459 68636375 1902454 1885398 NC_000014.9 scf7180000172779 99.0 True fake: scaffold gap size wrong estimation (local) 68615439 68619211 1906423 1902646 NC_000014.9 scf7180000172779 99.95 True local misassembly 68613742 68615367 1908421 1906817 NC_000014.9 scf7180000172779 98.32 True fake: not a misassembly (possible transposable element) 35257495 35258205 1909232 1908522 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 68582852 68612830 1941104 1911225 NC_000014.9 scf7180000172779 99.53 True fake: scaffold gap size wrong estimation (local) 68578300 68581924 1945551 1941926 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 68560721 68578202 1963111 1945640 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 68549688 68560483 1974141 1963269 NC_000014.9 scf7180000172779 99.38 True fake: scaffold gap size wrong estimation (local) 68537499 68549423 1986287 1974361 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 68515995 68537252 2007717 1986504 NC_000014.9 scf7180000172779 99.38 True fake: scaffold gap size wrong estimation (local) 68505747 68515769 2018055 2008026 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 68494248 68505560 2029542 2018228 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 68484626 68494081 2039309 2029655 NC_000014.9 scf7180000172779 98.2 True fake: scaffold gap size wrong estimation (local) 68465967 68484375 2057950 2039504 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 68460355 68465797 2063523 2058064 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 68457886 68460209 2066043 2063720 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68457095 68457683 2066802 2066214 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68455683 68456875 2068154 2066962 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 68441543 68455592 2082284 2068252 NC_000014.9 scf7180000172779 99.54 True fake: scaffold gap size wrong estimation (local) 68440620 68441283 2083291 2082628 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 68439507 68440619 2084448 2083336 NC_000014.9 scf7180000172779 99.46 True indel: indel (<= 5bp) 68437024 68439182 2086926 2084768 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 68435512 68437023 2088736 2087225 NC_000014.9 scf7180000172779 98.41 True local misassembly 68434263 68434853 2089327 2088737 NC_000014.9 scf7180000172779 99.83 True local misassembly 68434761 68435380 2090377 2089758 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68426344 68428669 2098926 2096601 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 68422577 68425943 2102657 2099291 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 68399388 68422293 2125777 2102856 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 68371084 68399268 2154042 2125904 NC_000014.9 scf7180000172779 99.36 True fake: scaffold gap size wrong estimation (local) 68357003 68370814 2167950 2154170 NC_000014.9 scf7180000172779 99.31 True fake: scaffold gap size wrong estimation (local) 68354487 68356177 2170474 2168759 NC_000014.9 scf7180000172779 99.59 True fake: scaffold gap size wrong estimation (local) 68349620 68354230 2175270 2170660 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 68348853 68349436 2176023 2175440 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68344955 68348654 2179885 2176166 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 68343127 68344228 2181650 2180549 NC_000014.9 scf7180000172779 99.73 True indel: indel (<= 5bp) 68337809 68342730 2186965 2182044 NC_000014.9 scf7180000172779 99.82 True fake: scaffold gap size wrong estimation (local) 68337262 68337808 2188926 2188380 NC_000014.9 scf7180000172779 99.82 True indel: indel (<= 5bp) 68335242 68337261 2190948 2188929 NC_000014.9 scf7180000172779 97.03 True fake: scaffold gap size wrong estimation (local) 68332753 68334882 2193369 2191240 NC_000014.9 scf7180000172779 99.72 True indel: indel (> 5bp) 68331394 68332752 2194734 2193376 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 68329984 68331133 2196085 2194936 NC_000014.9 scf7180000172779 99.74 True fake: scaffold gap size wrong estimation (local) 68326270 68327378 2197254 2196146 NC_000014.9 scf7180000172779 99.82 True local misassembly 68327399 68329738 2199643 2197305 NC_000014.9 scf7180000172779 99.83 True local misassembly 68323575 68325573 2201657 2199659 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 68315790 68323666 2210056 2202169 NC_000014.9 scf7180000172779 99.67 True fake: scaffold gap size wrong estimation (local) 68311848 68315582 2213956 2210221 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 68310755 68311700 2215041 2214096 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68303473 68310593 2222342 2215190 NC_000014.9 scf7180000172779 99.62 True fake: scaffold gap size wrong estimation (local) 68291474 68302992 2234666 2222814 NC_000014.9 scf7180000172779 96.57 True fake: scaffold gap size wrong estimation (local) 68289612 68290896 2236436 2235156 NC_000014.9 scf7180000172779 99.69 True fake: scaffold gap size wrong estimation (local) 68282250 68289467 2243764 2236546 NC_000014.9 scf7180000172779 99.92 True fake: scaffold gap size wrong estimation (local) 68272961 68282110 2253155 2243858 NC_000014.9 scf7180000172779 98.73 True fake: scaffold gap size wrong estimation (local) 68236036 68272637 2289868 2253433 NC_000014.9 scf7180000172779 99.24 True fake: scaffold gap size wrong estimation (local) 68207062 68235447 2318872 2290514 NC_000014.9 scf7180000172779 98.98 True fake: scaffold gap size wrong estimation (local) 68203856 68206871 2322062 2319021 NC_000014.9 scf7180000172779 99.9 True fake: scaffold gap size wrong estimation (local) 68196192 68203400 2329694 2322676 NC_000014.9 scf7180000172779 97.26 True fake: scaffold gap size wrong estimation (local) 68189939 68195685 2335849 2330104 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 68187067 68187866 2338525 2337726 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68184108 68185726 2341525 2339901 NC_000014.9 scf7180000172779 99.94 True fake: scaffold gap size wrong estimation (local) 68171554 68183900 2354102 2341663 NC_000014.9 scf7180000172779 99.35 True fake: scaffold gap size wrong estimation (local) 68159626 68171360 2365886 2354239 NC_000014.9 scf7180000172779 98.91 True fake: scaffold gap size wrong estimation (local) 68155461 68159414 2369959 2366012 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 68124828 68155243 2400027 2370111 NC_000014.9 scf7180000172779 95.76 True fake: scaffold gap size wrong estimation (local) 68123790 68124691 2401043 2400142 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68120331 68123553 2404493 2401257 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68115532 68119344 2409203 2405391 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68102992 68114905 2421678 2409765 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68095988 68102644 2428628 2421972 NC_000014.9 scf7180000172779 99.98 True fake: scaffold gap size wrong estimation (local) 68093622 68095769 2430986 2428839 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 68088036 68090727 2436089 2433398 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68086999 68087832 2437059 2436208 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 68082209 68086901 2441860 2437168 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68067952 68082012 2455894 2442024 NC_000014.9 scf7180000172779 97.96 True fake: scaffold gap size wrong estimation (local) 68063683 68067232 2460399 2456850 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 68062797 68063480 2461447 2460764 NC_000014.9 scf7180000172779 96.35 True local misassembly 68061315 68062583 2462716 2461448 NC_000014.9 scf7180000172779 100.0 True relocation, inconsistency = -128597 68187885 68189911 2464743 2462717 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 85441285 85442760 2466219 2464744 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 68185633 68187103 2467714 2466244 NC_000014.9 scf7180000172779 99.86 True relocation, scaffold gap is present, inconsistency = -17255401 85433223 85441013 2475377 2467735 NC_000014.9 scf7180000172779 97.76 True fake: scaffold gap size wrong estimation (local) 85424567 85432666 2483989 2475920 NC_000014.9 scf7180000172779 99.49 True fake: scaffold gap size wrong estimation (local) 85397882 85424459 2510685 2484070 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 85396027 85397751 2512480 2510756 NC_000014.9 scf7180000172779 99.77 True indel: indel (<= 5bp) 85394806 85395937 2513706 2512575 NC_000014.9 scf7180000172779 98.14 True local misassembly 85384799 85394537 2523589 2513851 NC_000014.9 scf7180000172779 99.93 True fake: scaffold gap size wrong estimation (local) 85382663 85384798 2528751 2526616 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 85376446 85382662 2535162 2528946 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 85372014 85375556 2539540 2535998 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 85369976 85371335 2541621 2540262 NC_000014.9 scf7180000172779 98.53 True fake: scaffold gap size wrong estimation (local) 85367556 85368696 2544684 2543514 NC_000014.9 scf7180000172779 97.4 True fake: scaffold gap size wrong estimation (local) 85356183 85367315 2556068 2544936 NC_000014.9 scf7180000172779 99.95 True fake: scaffold gap size wrong estimation (local) 85353470 85356182 2560183 2557471 NC_000014.9 scf7180000172779 99.93 True indel: indel (> 5bp) 85352862 85353463 2560785 2560184 NC_000014.9 scf7180000172779 97.18 True fake: scaffold gap size wrong estimation (local) 85340883 85352041 2572821 2561640 NC_000014.9 scf7180000172779 99.62 True fake: scaffold gap size wrong estimation (local) 85337960 85340790 2575746 2572916 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 85335316 85337804 2578309 2575821 NC_000014.9 scf7180000172779 100.0 True indel: indel (> 5bp) 85326265 85335305 2587350 2578310 NC_000014.9 scf7180000172779 99.99 True fake: scaffold gap size wrong estimation (local) 85324000 85326264 2591106 2588842 NC_000014.9 scf7180000172779 99.82 True relocation, inconsistency = 843665 86169930 86171028 2591107 2592205 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86172135 86173322 2593499 2594686 NC_000014.9 scf7180000172779 99.83 True fake: scaffold gap size wrong estimation (local) 86174719 86186843 2596072 2608587 NC_000014.9 scf7180000172779 95.5 True fake: scaffold gap size wrong estimation (local) 86188403 86198422 2610050 2620386 NC_000014.9 scf7180000172779 99.06 True fake: scaffold gap size wrong estimation (local) 86200383 86224718 2622162 2646552 NC_000014.9 scf7180000172779 99.58 True fake: scaffold gap size wrong estimation (local) 86224886 86240593 2646663 2662613 NC_000014.9 scf7180000172779 97.81 True fake: scaffold gap size wrong estimation (local) 86241009 86244622 2662964 2666503 NC_000014.9 scf7180000172779 97.32 True fake: scaffold gap size wrong estimation (local) 86246989 86255163 2668483 2676655 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 86255434 86265501 2676971 2687031 NC_000014.9 scf7180000172779 99.21 True fake: scaffold gap size wrong estimation (local) 86266976 86268521 2688378 2689920 NC_000014.9 scf7180000172779 99.03 True fake: scaffold gap size wrong estimation (local) 86270083 86272029 2691188 2693123 NC_000014.9 scf7180000172779 98.77 True fake: scaffold gap size wrong estimation (local) 86272896 86277969 2693999 2699062 NC_000014.9 scf7180000172779 98.75 True fake: scaffold gap size wrong estimation (local) 86278164 86287033 2699208 2708064 NC_000014.9 scf7180000172779 99.31 True fake: scaffold gap size wrong estimation (local) 86287305 86303947 2708485 2725048 NC_000014.9 scf7180000172779 99.32 True fake: scaffold gap size wrong estimation (local) 86304173 86305908 2725178 2726914 NC_000014.9 scf7180000172779 99.77 True fake: scaffold gap size wrong estimation (local) 86306327 86307258 2727107 2728038 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 86307412 86308479 2728521 2729588 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 86309338 86313630 2730276 2734473 NC_000014.9 scf7180000172779 97.34 True fake: scaffold gap size wrong estimation (local) 86318361 86322755 2740836 2745211 NC_000014.9 scf7180000172779 99.22 True fake: scaffold gap size wrong estimation (local) 86323003 86329429 2745367 2751793 NC_000014.9 scf7180000172779 99.81 True fake: scaffold gap size wrong estimation (local) 86330878 86346526 2753114 2768996 NC_000014.9 scf7180000172779 98.46 True fake: scaffold gap size wrong estimation (local) 86346782 86355728 2769148 2778222 NC_000014.9 scf7180000172779 98.45 True fake: scaffold gap size wrong estimation (local) 86356530 86365233 2778883 2787412 NC_000014.9 scf7180000172779 97.57 True fake: scaffold gap size wrong estimation (local) 86364131 86364671 2787449 2787989 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 46105841 46107128 2789277 2787990 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 86365211 86375607 2789407 2799802 NC_000014.9 scf7180000172779 99.79 True fake: scaffold gap size wrong estimation (local) 86376139 86394708 2800251 2818865 NC_000014.9 scf7180000172779 96.92 True fake: scaffold gap size wrong estimation (local) 86395304 86398077 2819405 2822178 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86398185 86403902 2822270 2827989 NC_000014.9 scf7180000172779 99.96 True fake: scaffold gap size wrong estimation (local) 86404093 86406234 2828152 2830293 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86406530 86416988 2830562 2840922 NC_000014.9 scf7180000172779 98.89 True fake: scaffold gap size wrong estimation (local) 86417023 86417603 2841075 2841655 NC_000014.9 scf7180000172779 99.48 True fake: scaffold gap size wrong estimation (local) 86418101 86420670 2842061 2844610 NC_000014.9 scf7180000172779 99.11 True fake: scaffold gap size wrong estimation (local) 86420905 86443285 2844737 2867999 NC_000014.9 scf7180000172779 99.74 True fake: scaffold gap size wrong estimation (local) 86444375 86451194 2869114 2875908 NC_000014.9 scf7180000172779 99.16 True fake: scaffold gap size wrong estimation (local) 86451316 86471591 2876165 2895710 NC_000014.9 scf7180000172779 96.13 True fake: scaffold gap size wrong estimation (local) 86475227 86476074 2899257 2900105 NC_000014.9 scf7180000172779 99.76 True fake: scaffold gap size wrong estimation (local) 86476161 86520384 2900206 2944431 NC_000014.9 scf7180000172779 99.84 True fake: scaffold gap size wrong estimation (local) 86520537 86535783 2944598 2959858 NC_000014.9 scf7180000172779 99.85 True fake: scaffold gap size wrong estimation (local) 86535958 86537507 2960318 2961867 NC_000014.9 scf7180000172779 99.68 True fake: scaffold gap size wrong estimation (local) 86537508 86539996 2963114 2965602 NC_000014.9 scf7180000172779 97.99 True indel: indel (<= 5bp) 86539998 86541997 2965603 2967602 NC_000014.9 scf7180000172779 99.95 True indel: indel (> 5bp) 86542031 86548111 2967603 2973683 NC_000014.9 scf7180000172779 99.93 True local misassembly 86548364 86549237 2973684 2974557 NC_000014.9 scf7180000172779 97.71 True local misassembly 86549339 86552392 2974558 2977611 NC_000014.9 scf7180000172779 99.28 True indel: stretch of mismatches 86552499 86555303 2977718 2980522 NC_000014.9 scf7180000172779 99.89 True fake: scaffold gap size wrong estimation (local) 86556814 86559087 2982113 2984386 NC_000014.9 scf7180000172779 99.87 True fake: not a misassembly (possible transposable element) 50237277 50238249 2984430 2985402 NC_000014.9 scf7180000172779 99.79 True fake: not a misassembly (possible transposable element) 86559255 86582289 2985436 3008518 NC_000014.9 scf7180000172779 99.86 True fake: scaffold gap size wrong estimation (local) 86583361 86586265 3009514 3012418 NC_000014.9 scf7180000172779 99.97 True fake: not a misassembly (possible transposable element) 77770468 77772545 3015091 3013002 NC_000014.9 scf7180000172779 99.95 True fake: not a misassembly (possible transposable element) 86586358 86587525 3015258 3016425 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 86587526 86590504 3018100 3021078 NC_000014.9 scf7180000172779 99.9 True relocation, scaffold gap is present, inconsistency = 8819379 77767235 77768065 3021990 3021160 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 77766272 77767004 3023361 3022629 NC_000014.9 scf7180000172779 96.86 True local misassembly 77765081 77765765 3024046 3023362 NC_000014.9 scf7180000172779 99.85 True relocation, scaffold gap is present, inconsistency = 8824247 86595690 86596499 3029724 3030533 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86596596 86608834 3030618 3042819 NC_000014.9 scf7180000172779 99.3 True fake: scaffold gap size wrong estimation (local) 86611831 86625620 3045798 3059417 NC_000014.9 scf7180000172779 98.65 True fake: not a misassembly (possible transposable element) 103801116 103801703 3060109 3059522 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 86625594 86628280 3060183 3062892 NC_000014.9 scf7180000172779 99.67 True fake: scaffold gap size wrong estimation (local) 86628388 86641052 3062997 3075669 NC_000014.9 scf7180000172779 99.87 True fake: not a misassembly (possible transposable element) 82850144 82850804 3075841 3076501 NC_000014.9 scf7180000172779 100.0 True fake: not a misassembly (possible transposable element) 86641252 86694680 3076552 3130048 NC_000014.9 scf7180000172779 98.43 True fake: scaffold gap size wrong estimation (local) 86696522 86721866 3131671 3156910 NC_000014.9 scf7180000172779 99.16 True fake: scaffold gap size wrong estimation (local) 86722063 86729386 3157018 3164342 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 86729629 86731753 3164585 3166709 NC_000014.9 scf7180000172779 99.91 True fake: scaffold gap size wrong estimation (local) 86731948 86733824 3166937 3168813 NC_000014.9 scf7180000172779 99.52 True local misassembly 86734328 86734917 3169346 3169932 NC_000014.9 scf7180000172779 97.1 True indel: stretch of mismatches 86734918 86736198 3169933 3171213 NC_000014.9 scf7180000172779 98.44 True fake: scaffold gap size wrong estimation (local) 86737009 86738735 3171980 3173706 NC_000014.9 scf7180000172779 99.94 True local misassembly 86736690 86737412 3174412 3175134 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86737639 86741461 3176313 3180135 NC_000014.9 scf7180000172779 99.95 True fake: scaffold gap size wrong estimation (local) 86741621 86745280 3180246 3183905 NC_000014.9 scf7180000172779 99.73 True fake: scaffold gap size wrong estimation (local) 86747166 86748795 3185600 3187331 NC_000014.9 scf7180000172779 97.3 True fake: scaffold gap size wrong estimation (local) 86748941 86763161 3187499 3201700 NC_000014.9 scf7180000172779 99.19 True fake: scaffold gap size wrong estimation (local) 86763414 86767596 3201862 3205953 NC_000014.9 scf7180000172779 97.5 True fake: scaffold gap size wrong estimation (local) 86767724 86769578 3206094 3207948 NC_000014.9 scf7180000172779 99.78 True fake: scaffold gap size wrong estimation (local) 86769787 86772686 3208139 3211036 NC_000014.9 scf7180000172779 99.72 True fake: scaffold gap size wrong estimation (local) 86772859 86774375 3211314 3212848 NC_000014.9 scf7180000172779 99.87 True fake: scaffold gap size wrong estimation (local) 86775193 86783733 3213622 3222165 NC_000014.9 scf7180000172779 99.8 True fake: not a misassembly (possible transposable element) 87170263 87171897 3223822 3222188 NC_000014.9 scf7180000172779 99.88 True fake: not a misassembly (possible transposable element) 86783636 86807427 3223823 3247615 NC_000014.9 scf7180000172779 99.88 True fake: scaffold gap size wrong estimation (local) 86808067 86808930 3248196 3249059 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86809061 86810290 3249178 3250405 NC_000014.9 scf7180000172779 99.67 True fake: scaffold gap size wrong estimation (local) 86811388 86811976 3251371 3252028 NC_000014.9 scf7180000172779 100.0 True fake: scaffold gap size wrong estimation (local) 86813301 86856809 3253344 3297189 NC_000014.9 scf7180000172779 98.77 True CONTIG scf7180000172779 3297895 misassembled 60834991 60843443 1688 10568 NC_000014.9 scf7180000172780 95.81 True fake: scaffold gap size wrong estimation (local) 60843542 60847241 10639 14341 NC_000014.9 scf7180000172780 99.78 True fake: scaffold gap size wrong estimation (local) 60847404 60851736 14477 18862 NC_000014.9 scf7180000172780 99.08 True fake: scaffold gap size wrong estimation (local) 60851954 60852715 18959 19720 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 60853649 60856656 20943 23950 NC_000014.9 scf7180000172780 99.73 True fake: scaffold gap size wrong estimation (local) 60856944 60857575 24200 24831 NC_000014.9 scf7180000172780 99.84 True fake: scaffold gap size wrong estimation (local) 60858323 60860379 25484 27558 NC_000014.9 scf7180000172780 99.85 True fake: scaffold gap size wrong estimation (local) 60860587 60869015 27720 36177 NC_000014.9 scf7180000172780 99.87 True fake: scaffold gap size wrong estimation (local) 60869316 60871728 36465 38877 NC_000014.9 scf7180000172780 99.92 True fake: scaffold gap size wrong estimation (local) 60872300 60872853 39118 39670 NC_000014.9 scf7180000172780 99.82 True local misassembly 60871894 60881230 39691 49020 NC_000014.9 scf7180000172780 99.51 True fake: scaffold gap size wrong estimation (local) 60882093 60884533 50040 52480 NC_000014.9 scf7180000172780 99.06 True indel: indel (<= 5bp) 60884535 60885246 52481 53192 NC_000014.9 scf7180000172780 99.3 True indel: indel (<= 5bp) 60885288 60887378 53233 55322 NC_000014.9 scf7180000172780 99.81 True relocation, scaffold gap is present, inconsistency = 12601843 48267925 48280179 70838 58588 NC_000014.9 scf7180000172780 99.89 True fake: not a misassembly (possible transposable element) 48253294 48255251 72795 70839 NC_000014.9 scf7180000172780 99.3 True fake: not a misassembly (possible transposable element) 48265772 48266666 73710 72816 NC_000014.9 scf7180000172780 99.78 True local misassembly 48267147 48267964 74551 73734 NC_000014.9 scf7180000172780 100.0 True relocation, scaffold gap is present, inconsistency = 25437325 73706842 73707967 76104 77229 NC_000014.9 scf7180000172780 97.87 True indel: indel (> 5bp) 73707998 73708878 77230 78110 NC_000014.9 scf7180000172780 95.57 True fake: scaffold gap size wrong estimation (local) 73711487 73716461 80553 85527 NC_000014.9 scf7180000172780 99.9 True fake: scaffold gap size wrong estimation (local) 73716711 73720304 85876 89469 NC_000014.9 scf7180000172780 99.81 True fake: scaffold gap size wrong estimation (local) 73720399 73730820 89783 100220 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 73730915 73732551 100357 101993 NC_000014.9 scf7180000172780 99.94 True fake: scaffold gap size wrong estimation (local) 73734198 73736389 103513 105704 NC_000014.9 scf7180000172780 99.86 True fake: scaffold gap size wrong estimation (local) 73736628 73737601 106068 107041 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73738014 73766580 107495 136080 NC_000014.9 scf7180000172780 99.18 True fake: scaffold gap size wrong estimation (local) 73766884 73767540 136359 137015 NC_000014.9 scf7180000172780 95.59 True fake: scaffold gap size wrong estimation (local) 73767541 73768602 137065 138126 NC_000014.9 scf7180000172780 99.81 True local misassembly 73768704 73769647 138127 139070 NC_000014.9 scf7180000172780 96.4 True fake: scaffold gap size wrong estimation (local) 73769923 73772794 139316 142187 NC_000014.9 scf7180000172780 99.9 True relocation, inconsistency = 7125 73780057 73781548 142325 143816 NC_000014.9 scf7180000172780 97.45 True fake: scaffold gap size wrong estimation (local) 73781956 73791104 144261 153409 NC_000014.9 scf7180000172780 99.9 True fake: scaffold gap size wrong estimation (local) 73791204 73793282 153480 155555 NC_000014.9 scf7180000172780 99.33 True fake: scaffold gap size wrong estimation (local) 73793799 73799280 156054 161531 NC_000014.9 scf7180000172780 99.47 True fake: scaffold gap size wrong estimation (local) 73799538 73803937 161773 166229 NC_000014.9 scf7180000172780 96.96 True fake: scaffold gap size wrong estimation (local) 73803985 73805827 166420 168262 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73807484 73808157 169882 170555 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73808359 73809135 170706 171482 NC_000014.9 scf7180000172780 99.87 True fake: scaffold gap size wrong estimation (local) 73809228 73810130 171672 172574 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73810804 73811882 173358 174436 NC_000014.9 scf7180000172780 99.91 True local misassembly 73812000 73812642 174437 175079 NC_000014.9 scf7180000172780 96.89 True fake: scaffold gap size wrong estimation (local) 73812851 73813457 175319 175925 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73813653 73814991 176157 177475 NC_000014.9 scf7180000172780 98.33 True fake: scaffold gap size wrong estimation (local) 73815329 73819296 177814 181982 NC_000014.9 scf7180000172780 97.06 True fake: scaffold gap size wrong estimation (local) 73820354 73821613 183121 184380 NC_000014.9 scf7180000172780 99.92 True fake: scaffold gap size wrong estimation (local) 73822305 73824810 185062 187470 NC_000014.9 scf7180000172780 95.98 True fake: scaffold gap size wrong estimation (local) 73825031 73826634 187822 189425 NC_000014.9 scf7180000172780 99.94 True fake: scaffold gap size wrong estimation (local) 73828170 73828970 190823 191623 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 73831901 73832761 194325 195185 NC_000014.9 scf7180000172780 99.77 True fake: scaffold gap size wrong estimation (local) 73832878 73834713 195460 197295 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73836584 73837207 200215 200838 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73838079 73839519 202793 204185 NC_000014.9 scf7180000172780 96.62 True fake: not a misassembly (possible transposable element) 66593556 66594940 206332 204948 NC_000014.9 scf7180000172780 100.0 True fake: not a misassembly (possible transposable element) 73841037 73842038 206383 207384 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73842167 73842939 207443 208272 NC_000014.9 scf7180000172780 98.97 True relocation, scaffold gap is present, inconsistency = 7249423 66591550 66592230 209466 208786 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 66590545 66591227 210611 209931 NC_000014.9 scf7180000172780 96.78 True relocation, scaffold gap is present, inconsistency = 41420951 25168126 25168765 212078 211440 NC_000014.9 scf7180000172780 99.53 True fake: not a misassembly (possible transposable element) 57106112 57106778 213125 213791 NC_000014.9 scf7180000172780 99.55 True fake: not a misassembly (possible transposable element) 25148652 25167145 232549 213997 NC_000014.9 scf7180000172780 99.74 True fake: scaffold gap size wrong estimation (local) 25144805 25148571 236410 232644 NC_000014.9 scf7180000172780 99.89 True fake: not a misassembly (possible transposable element) 29396960 29398295 237907 236572 NC_000014.9 scf7180000172780 100.0 True fake: not a misassembly (possible transposable element) 25143970 25144685 238704 237990 NC_000014.9 scf7180000172780 99.86 True fake: scaffold gap size wrong estimation (local) 25142039 25143713 240524 238850 NC_000014.9 scf7180000172780 99.52 True fake: scaffold gap size wrong estimation (local) 25139688 25141808 242890 240770 NC_000014.9 scf7180000172780 99.62 True fake: scaffold gap size wrong estimation (local) 25138315 25139209 244288 243325 NC_000014.9 scf7180000172780 99.55 True fake: scaffold gap size wrong estimation (local) 25125176 25138006 257279 244459 NC_000014.9 scf7180000172780 99.28 True fake: scaffold gap size wrong estimation (local) 25116711 25124909 265808 257600 NC_000014.9 scf7180000172780 99.96 True fake: scaffold gap size wrong estimation (local) 25116009 25116580 266537 265965 NC_000014.9 scf7180000172780 99.65 True fake: scaffold gap size wrong estimation (local) 25107259 25115720 275214 266742 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 25106172 25106759 276418 275831 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 25101277 25105428 281150 276999 NC_000014.9 scf7180000172780 99.95 True fake: scaffold gap size wrong estimation (local) 25099963 25101047 282405 281321 NC_000014.9 scf7180000172780 99.35 True fake: scaffold gap size wrong estimation (local) 25099080 25099962 283311 282429 NC_000014.9 scf7180000172780 98.75 True fake: scaffold gap size wrong estimation (local) 25055719 25097574 326784 284800 NC_000014.9 scf7180000172780 98.65 True fake: scaffold gap size wrong estimation (local) 25045872 25055438 336582 327023 NC_000014.9 scf7180000172780 99.86 True fake: scaffold gap size wrong estimation (local) 25036863 25045611 345428 336721 NC_000014.9 scf7180000172780 99.22 True fake: scaffold gap size wrong estimation (local) 25024267 25036692 357901 345578 NC_000014.9 scf7180000172780 99.15 True indel: indel (> 5bp) 25002968 25024054 379198 358145 NC_000014.9 scf7180000172780 99.71 True fake: scaffold gap size wrong estimation (local) 25000346 25002818 381831 379412 NC_000014.9 scf7180000172780 97.68 True fake: scaffold gap size wrong estimation (local) 24981523 25000172 400640 381998 NC_000014.9 scf7180000172780 99.58 True fake: scaffold gap size wrong estimation (local) 24973602 24981380 408512 400725 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 24970212 24973384 411800 408628 NC_000014.9 scf7180000172780 99.34 True indel: indel (> 5bp) 24968171 24970177 413807 411801 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 24964650 24968170 418996 415476 NC_000014.9 scf7180000172780 100.0 True indel: indel (<= 5bp) 24963984 24964647 419660 418997 NC_000014.9 scf7180000172780 96.99 True indel: indel (> 5bp) 24962484 24963970 421147 419661 NC_000014.9 scf7180000172780 95.23 True indel: indel (> 5bp) 24952306 24962287 431251 421270 NC_000014.9 scf7180000172780 99.87 True fake: scaffold gap size wrong estimation (local) 24951486 24952305 432090 431271 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 24940981 24951155 442488 432285 NC_000014.9 scf7180000172780 99.74 True fake: scaffold gap size wrong estimation (local) 24931208 24940812 452250 442639 NC_000014.9 scf7180000172780 99.81 True fake: scaffold gap size wrong estimation (local) 24899804 24930855 483563 452515 NC_000014.9 scf7180000172780 99.83 True fake: scaffold gap size wrong estimation (local) 24897448 24899526 486000 483910 NC_000014.9 scf7180000172780 99.66 True fake: scaffold gap size wrong estimation (local) 24882412 24897154 500959 486281 NC_000014.9 scf7180000172780 99.33 True fake: scaffold gap size wrong estimation (local) 24851405 24882123 532108 501203 NC_000014.9 scf7180000172780 99.48 True fake: scaffold gap size wrong estimation (local) 24845286 24851252 538129 532163 NC_000014.9 scf7180000172780 99.98 True fake: not a misassembly (possible transposable element) 49809333 49810115 538180 538962 NC_000014.9 scf7180000172780 100.0 True fake: not a misassembly (possible transposable element) 24836616 24845045 547442 539013 NC_000014.9 scf7180000172780 99.85 True fake: not a misassembly (possible transposable element) 49807804 49808367 547567 548130 NC_000014.9 scf7180000172780 99.66 True fake: not a misassembly (possible transposable element) 24834175 24836421 550378 548131 NC_000014.9 scf7180000172780 99.78 True relocation, scaffold gap is present, inconsistency = 24973720 49810280 49818115 550517 558348 NC_000014.9 scf7180000172780 99.14 True fake: scaffold gap size wrong estimation (local) 49818363 49819401 558663 559701 NC_000014.9 scf7180000172780 99.9 True fake: scaffold gap size wrong estimation (local) 49819510 49820013 559806 560309 NC_000014.9 scf7180000172780 99.6 True fake: scaffold gap size wrong estimation (local) 49822955 49824071 562499 563615 NC_000014.9 scf7180000172780 99.82 True fake: scaffold gap size wrong estimation (local) 49824556 49833053 564103 573042 NC_000014.9 scf7180000172780 95.16 True fake: scaffold gap size wrong estimation (local) 49833171 49835077 573145 575051 NC_000014.9 scf7180000172780 99.84 True fake: scaffold gap size wrong estimation (local) 49835226 49836248 575214 576236 NC_000014.9 scf7180000172780 99.8 True fake: scaffold gap size wrong estimation (local) 49837198 49838598 577257 578657 NC_000014.9 scf7180000172780 98.43 True fake: scaffold gap size wrong estimation (local) 49840471 49841096 580574 581199 NC_000014.9 scf7180000172780 99.84 True fake: scaffold gap size wrong estimation (local) 49842227 49842770 582644 583187 NC_000014.9 scf7180000172780 99.82 True local misassembly 49842913 49843915 583193 584195 NC_000014.9 scf7180000172780 97.91 True fake: scaffold gap size wrong estimation (local) 49844119 49844890 584432 585199 NC_000014.9 scf7180000172780 98.58 True fake: scaffold gap size wrong estimation (local) 49845288 49846593 585600 586905 NC_000014.9 scf7180000172780 98.24 True fake: scaffold gap size wrong estimation (local) 49848035 49855307 588369 595396 NC_000014.9 scf7180000172780 96.27 True fake: scaffold gap size wrong estimation (local) 49855935 49858065 595974 598024 NC_000014.9 scf7180000172780 95.96 True fake: scaffold gap size wrong estimation (local) 49858319 49859054 598445 599180 NC_000014.9 scf7180000172780 99.59 True fake: scaffold gap size wrong estimation (local) 49859695 49860946 599660 600911 NC_000014.9 scf7180000172780 98.4 True fake: scaffold gap size wrong estimation (local) 49861039 49864612 601012 604557 NC_000014.9 scf7180000172780 98.83 True fake: scaffold gap size wrong estimation (local) 49864820 49866214 604872 606266 NC_000014.9 scf7180000172780 99.64 True fake: scaffold gap size wrong estimation (local) 49867469 49869331 607366 609221 NC_000014.9 scf7180000172780 99.08 True fake: scaffold gap size wrong estimation (local) 49869597 49870466 609480 610349 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49870551 49872802 610432 612750 NC_000014.9 scf7180000172780 98.5 True fake: scaffold gap size wrong estimation (local) 49872917 49873577 613047 613707 NC_000014.9 scf7180000172780 99.85 True indel: indel (> 5bp) 49873650 49874271 613708 614329 NC_000014.9 scf7180000172780 96.78 True fake: scaffold gap size wrong estimation (local) 49875400 49876701 615076 616377 NC_000014.9 scf7180000172780 99.54 True fake: scaffold gap size wrong estimation (local) 49877843 49878364 618026 618547 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49880438 49882051 620535 622147 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 49882250 49888976 622791 629349 NC_000014.9 scf7180000172780 96.85 True fake: scaffold gap size wrong estimation (local) 49889542 49891274 630039 631757 NC_000014.9 scf7180000172780 99.0 True indel: stretch of mismatches 49891373 49899348 631856 639820 NC_000014.9 scf7180000172780 99.23 True fake: scaffold gap size wrong estimation (local) 49900798 49901391 641251 641844 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49901613 49902592 641936 642916 NC_000014.9 scf7180000172780 99.9 True fake: scaffold gap size wrong estimation (local) 49903987 49908821 644332 649095 NC_000014.9 scf7180000172780 96.08 True fake: scaffold gap size wrong estimation (local) 49909023 49910427 649382 650792 NC_000014.9 scf7180000172780 99.43 True fake: scaffold gap size wrong estimation (local) 49910532 49911256 650900 651624 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49913266 49913827 653359 653920 NC_000014.9 scf7180000172780 99.64 True fake: scaffold gap size wrong estimation (local) 49914529 49916783 654578 656832 NC_000014.9 scf7180000172780 99.82 True fake: scaffold gap size wrong estimation (local) 49917050 49918418 657222 658590 NC_000014.9 scf7180000172780 100.0 True local misassembly 49918591 49919169 658591 659169 NC_000014.9 scf7180000172780 96.55 True fake: scaffold gap size wrong estimation (local) 49919785 49925391 660080 665545 NC_000014.9 scf7180000172780 96.06 True fake: scaffold gap size wrong estimation (local) 49925506 49926045 665598 666137 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49926240 49927250 666476 667486 NC_000014.9 scf7180000172780 100.0 True local misassembly 49927459 49929001 667487 669029 NC_000014.9 scf7180000172780 98.7 True fake: scaffold gap size wrong estimation (local) 49931583 49932249 670234 670900 NC_000014.9 scf7180000172780 100.0 True local misassembly 49930634 49931358 670951 671675 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49932982 49935206 671936 674160 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49935328 49936446 674397 675533 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 49939448 49941840 678315 680707 NC_000014.9 scf7180000172780 100.0 True fake: not a misassembly (possible transposable element) 73843084 73843793 680737 681442 NC_000014.9 scf7180000172780 99.44 True fake: not a misassembly (possible transposable element) 49941963 49943295 681463 682795 NC_000014.9 scf7180000172780 99.92 True relocation, scaffold gap is present, inconsistency = 23900961 73844916 73846211 683455 684750 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73846634 73847275 685433 686074 NC_000014.9 scf7180000172780 100.0 True local misassembly 73847406 73847973 686075 686642 NC_000014.9 scf7180000172780 95.25 True fake: scaffold gap size wrong estimation (local) 73849994 73853394 688413 691811 NC_000014.9 scf7180000172780 99.88 True fake: scaffold gap size wrong estimation (local) 73853591 73854115 692119 692644 NC_000014.9 scf7180000172780 99.81 True fake: scaffold gap size wrong estimation (local) 73854376 73855553 692864 694041 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73860340 73861911 699092 700663 NC_000014.9 scf7180000172780 99.68 True fake: scaffold gap size wrong estimation (local) 73862480 73863754 701234 702507 NC_000014.9 scf7180000172780 99.92 True indel: indel (<= 5bp) 73863837 73866129 702588 704880 NC_000014.9 scf7180000172780 99.96 True fake: scaffold gap size wrong estimation (local) 73867092 73868086 705781 706775 NC_000014.9 scf7180000172780 100.0 True local misassembly 73868207 73869574 706776 708143 NC_000014.9 scf7180000172780 95.1 True fake: scaffold gap size wrong estimation (local) 73870411 73872724 709007 711297 NC_000014.9 scf7180000172780 99.0 True fake: scaffold gap size wrong estimation (local) 73873712 73874667 712528 713483 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73876002 73876540 714639 715177 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73876718 73877333 715298 715913 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73877450 73880468 716065 719083 NC_000014.9 scf7180000172780 100.0 True fake: scaffold gap size wrong estimation (local) 73880596 73881777 719253 720434 NC_000014.9 scf7180000172780 99.92 True local misassembly 73881975 73882538 720435 720998 NC_000014.9 scf7180000172780 96.45 True fake: scaffold gap size wrong estimation (local) 73883745 73885078 722291 723624 NC_000014.9 scf7180000172780 100.0 True local misassembly 73883681 73890223 723645 730158 NC_000014.9 scf7180000172780 98.55 True fake: scaffold gap size wrong estimation (local) 73890436 73892829 730432 732852 NC_000014.9 scf7180000172780 99.46 True fake: scaffold gap size wrong estimation (local) 73893065 73897775 733152 737951 NC_000014.9 scf7180000172780 99.94 True fake: scaffold gap size wrong estimation (local) 73897908 73900191 738115 740398 NC_000014.9 scf7180000172780 100.0 True CONTIG scf7180000172780 742126 misassembled CONTIG scf7180000172781 305 unaligned 18522441 18523108 2453 3119 NC_000014.9 scf7180000172782 99.1 True CONTIG scf7180000172782 5553 correct_unaligned 103796044 103797030 1281 295 NC_000014.9 scf7180000172783 99.9 True fake: scaffold gap size wrong estimation (local) 103792942 103794336 4350 2956 NC_000014.9 scf7180000172783 99.93 True fake: scaffold gap size wrong estimation (local) 103790201 103791501 6971 5671 NC_000014.9 scf7180000172783 100.0 True fake: scaffold gap size wrong estimation (local) 103787728 103789270 9590 8048 NC_000014.9 scf7180000172783 99.94 True CONTIG scf7180000172783 11590 correct 106192666 106193256 8 598 NC_000014.9 scf7180000172784 100.0 True fake: scaffold gap size wrong estimation (local) 106194512 106196612 2002 4103 NC_000014.9 scf7180000172784 97.16 True fake: scaffold gap size wrong estimation (local) 106197011 106199364 4507 6860 NC_000014.9 scf7180000172784 99.87 True CONTIG scf7180000172784 6860 correct 96416344 96417631 2227 3514 NC_000014.9 scf7180000172785 99.92 True CONTIG scf7180000172785 3514 correct 18243573 18245595 1392 3553 NC_000014.9 scf7180000172786 98.54 True local misassembly 18245767 18246458 3554 4245 NC_000014.9 scf7180000172786 99.86 True fake: scaffold gap size wrong estimation (local) 18246561 18249273 4408 7120 NC_000014.9 scf7180000172786 99.93 True fake: scaffold gap size wrong estimation (local) 18249949 18250971 7770 8792 NC_000014.9 scf7180000172786 99.9 True local misassembly 18251785 18252535 9094 9844 NC_000014.9 scf7180000172786 95.74 True CONTIG scf7180000172786 11983 correct 18241396 18242289 1401 508 NC_000014.9 scf7180000172787 97.43 True local misassembly 18238826 18240154 3114 1786 NC_000014.9 scf7180000172787 99.7 True CONTIG scf7180000172787 5698 correct 62526022 62535879 1787 11651 NC_000014.9 scf7180000172788 99.81 True fake: scaffold gap size wrong estimation (local) 62541871 62554252 18985 31469 NC_000014.9 scf7180000172788 99.19 True fake: not a misassembly (possible transposable element) 79588191 79588787 31490 32086 NC_000014.9 scf7180000172788 100.0 True fake: not a misassembly (possible transposable element) 62554137 62556207 32087 34157 NC_000014.9 scf7180000172788 99.76 True fake: scaffold gap size wrong estimation (local) 62556208 62559836 34531 38159 NC_000014.9 scf7180000172788 99.89 True fake: scaffold gap size wrong estimation (local) 62560973 62574417 39232 52644 NC_000014.9 scf7180000172788 98.23 True fake: scaffold gap size wrong estimation (local) 62574864 62577369 53101 55606 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62577770 62582752 56258 61240 NC_000014.9 scf7180000172788 99.44 True local misassembly 62582852 62584739 61241 63128 NC_000014.9 scf7180000172788 98.94 True fake: not a misassembly (possible transposable element) 45693046 45693976 64083 63153 NC_000014.9 scf7180000172788 100.0 True fake: not a misassembly (possible transposable element) 62584947 62610119 64197 89370 NC_000014.9 scf7180000172788 99.19 True fake: scaffold gap size wrong estimation (local) 62610414 62623592 90070 103268 NC_000014.9 scf7180000172788 99.51 True fake: scaffold gap size wrong estimation (local) 62623857 62633076 103456 112819 NC_000014.9 scf7180000172788 98.66 True fake: scaffold gap size wrong estimation (local) 62634497 62635107 114293 114903 NC_000014.9 scf7180000172788 99.84 True fake: scaffold gap size wrong estimation (local) 62642926 62654041 123427 134552 NC_000014.9 scf7180000172788 99.79 True fake: scaffold gap size wrong estimation (local) 62654209 62663853 134653 144297 NC_000014.9 scf7180000172788 99.8 True fake: scaffold gap size wrong estimation (local) 62664095 62666266 144473 146646 NC_000014.9 scf7180000172788 99.77 True indel: indel (<= 5bp) 62666341 62694578 146725 175136 NC_000014.9 scf7180000172788 99.34 True fake: scaffold gap size wrong estimation (local) 62694842 62708975 175345 189442 NC_000014.9 scf7180000172788 99.7 True fake: scaffold gap size wrong estimation (local) 62709243 62728237 189694 208693 NC_000014.9 scf7180000172788 99.62 True fake: scaffold gap size wrong estimation (local) 62728368 62731056 208807 211494 NC_000014.9 scf7180000172788 99.93 True fake: scaffold gap size wrong estimation (local) 62731331 62771370 211731 252299 NC_000014.9 scf7180000172788 97.87 True fake: scaffold gap size wrong estimation (local) 62771600 62772458 252466 253324 NC_000014.9 scf7180000172788 99.88 True fake: scaffold gap size wrong estimation (local) 62772649 62781505 253514 262353 NC_000014.9 scf7180000172788 99.55 True indel: indel (> 5bp) 62781583 62782612 262423 263452 NC_000014.9 scf7180000172788 99.71 True fake: scaffold gap size wrong estimation (local) 62782803 62787758 263577 268424 NC_000014.9 scf7180000172788 97.57 True fake: not a misassembly (possible transposable element) 60901210 60901895 268442 269127 NC_000014.9 scf7180000172788 99.27 True fake: not a misassembly (possible transposable element) 62787728 62797733 269154 279337 NC_000014.9 scf7180000172788 98.33 True fake: scaffold gap size wrong estimation (local) 62798022 62799355 279557 280890 NC_000014.9 scf7180000172788 99.93 True fake: scaffold gap size wrong estimation (local) 62799860 62814641 281328 296124 NC_000014.9 scf7180000172788 99.82 True fake: scaffold gap size wrong estimation (local) 62814802 62816763 296841 298802 NC_000014.9 scf7180000172788 99.8 True fake: scaffold gap size wrong estimation (local) 62817184 62817859 299188 299863 NC_000014.9 scf7180000172788 99.41 True fake: scaffold gap size wrong estimation (local) 62818110 62819076 300375 301341 NC_000014.9 scf7180000172788 99.59 True fake: scaffold gap size wrong estimation (local) 62819077 62822668 301421 305012 NC_000014.9 scf7180000172788 99.64 True indel: indel (<= 5bp) 62822669 62826408 305014 308753 NC_000014.9 scf7180000172788 99.95 True indel: indel (<= 5bp) 62826409 62830405 308758 312754 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62830406 62840557 313854 324005 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62840745 62843439 324192 326886 NC_000014.9 scf7180000172788 99.74 True fake: scaffold gap size wrong estimation (local) 62843663 62846803 327016 330156 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62847175 62853840 330479 337159 NC_000014.9 scf7180000172788 99.97 True fake: scaffold gap size wrong estimation (local) 62854006 62859622 337245 342861 NC_000014.9 scf7180000172788 99.8 True fake: scaffold gap size wrong estimation (local) 62860023 62868840 343255 352072 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62869830 62872970 352906 356046 NC_000014.9 scf7180000172788 99.97 True fake: scaffold gap size wrong estimation (local) 62873142 62874411 356263 357532 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62875499 62877124 358592 360150 NC_000014.9 scf7180000172788 95.58 True fake: scaffold gap size wrong estimation (local) 62878267 62890257 361203 373248 NC_000014.9 scf7180000172788 99.48 True fake: scaffold gap size wrong estimation (local) 62890712 62895452 373617 378300 NC_000014.9 scf7180000172788 98.71 True fake: scaffold gap size wrong estimation (local) 62895560 62899570 378428 382438 NC_000014.9 scf7180000172788 99.95 True fake: scaffold gap size wrong estimation (local) 62899823 62901025 382655 383857 NC_000014.9 scf7180000172788 100.0 True local misassembly 62901178 62902899 383858 385579 NC_000014.9 scf7180000172788 98.61 True fake: scaffold gap size wrong estimation (local) 62902977 62909033 386031 392079 NC_000014.9 scf7180000172788 99.85 True fake: scaffold gap size wrong estimation (local) 62909318 62911951 392378 395034 NC_000014.9 scf7180000172788 99.39 True fake: scaffold gap size wrong estimation (local) 62912057 62915944 395166 398975 NC_000014.9 scf7180000172788 95.58 True fake: scaffold gap size wrong estimation (local) 62916225 62929747 399221 412773 NC_000014.9 scf7180000172788 99.85 True fake: scaffold gap size wrong estimation (local) 62929925 62947972 412963 430812 NC_000014.9 scf7180000172788 97.73 True fake: scaffold gap size wrong estimation (local) 62949255 62951742 431963 434469 NC_000014.9 scf7180000172788 99.96 True fake: scaffold gap size wrong estimation (local) 62951972 62969710 434728 452466 NC_000014.9 scf7180000172788 99.9 True fake: scaffold gap size wrong estimation (local) 62970065 62976136 452973 459044 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 62976373 62997685 459189 480495 NC_000014.9 scf7180000172788 99.89 True fake: scaffold gap size wrong estimation (local) 62997910 62999076 480711 481877 NC_000014.9 scf7180000172788 99.83 True fake: scaffold gap size wrong estimation (local) 62999850 63003447 482552 486149 NC_000014.9 scf7180000172788 99.97 True fake: scaffold gap size wrong estimation (local) 63003636 63055269 486172 538271 NC_000014.9 scf7180000172788 99.3 True fake: scaffold gap size wrong estimation (local) 63055434 63061890 538374 544838 NC_000014.9 scf7180000172788 99.98 True fake: scaffold gap size wrong estimation (local) 63061349 63062404 545164 546219 NC_000014.9 scf7180000172788 100.0 True local misassembly 63062587 63064420 546229 548062 NC_000014.9 scf7180000172788 98.91 True fake: scaffold gap size wrong estimation (local) 63064833 63071971 548493 555560 NC_000014.9 scf7180000172788 97.37 True fake: scaffold gap size wrong estimation (local) 63072974 63074920 555646 557592 NC_000014.9 scf7180000172788 100.0 True local misassembly 63071775 63073022 557643 558890 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 63074908 63079465 560317 564752 NC_000014.9 scf7180000172788 97.25 True fake: scaffold gap size wrong estimation (local) 63079571 63085018 564957 570402 NC_000014.9 scf7180000172788 99.93 True fake: scaffold gap size wrong estimation (local) 63085246 63085866 570499 571119 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 63086129 63088178 571439 573488 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 63088312 63097581 573576 582761 NC_000014.9 scf7180000172788 99.05 True fake: scaffold gap size wrong estimation (local) 63097742 63102010 582858 587124 NC_000014.9 scf7180000172788 99.91 True fake: scaffold gap size wrong estimation (local) 63102175 63106518 587245 591588 NC_000014.9 scf7180000172788 99.91 True fake: scaffold gap size wrong estimation (local) 63107768 63108459 592688 593482 NC_000014.9 scf7180000172788 99.68 True fake: scaffold gap size wrong estimation (local) 63109366 63116703 594391 601728 NC_000014.9 scf7180000172788 99.93 True fake: scaffold gap size wrong estimation (local) 63122702 63125259 606553 609110 NC_000014.9 scf7180000172788 100.0 True fake: scaffold gap size wrong estimation (local) 63125362 63126721 609213 610572 NC_000014.9 scf7180000172788 99.93 True fake: scaffold gap size wrong estimation (local) 63126855 63136329 610681 620135 NC_000014.9 scf7180000172788 99.63 True fake: scaffold gap size wrong estimation (local) 63136586 63137698 620380 621492 NC_000014.9 scf7180000172788 99.91 True fake: scaffold gap size wrong estimation (local) 63137927 63139108 621597 622778 NC_000014.9 scf7180000172788 99.92 True relocation, scaffold gap is present, inconsistency = -35066121 28073082 28073724 622873 623515 NC_000014.9 scf7180000172788 99.84 True fake: scaffold gap size wrong estimation (local) 28075623 28111619 625240 661332 NC_000014.9 scf7180000172788 99.62 True fake: scaffold gap size wrong estimation (local) 28111755 28124693 661492 674562 NC_000014.9 scf7180000172788 99.09 True fake: scaffold gap size wrong estimation (local) 28124884 28132585 674773 682406 NC_000014.9 scf7180000172788 96.96 True fake: scaffold gap size wrong estimation (local) 28132761 28136012 682562 685813 NC_000014.9 scf7180000172788 99.85 True local misassembly 28136220 28144144 685885 693711 NC_000014.9 scf7180000172788 98.57 True fake: scaffold gap size wrong estimation (local) 28144696 28148007 694183 697494 NC_000014.9 scf7180000172788 99.82 True fake: scaffold gap size wrong estimation (local) 28149747 28168081 699016 717444 NC_000014.9 scf7180000172788 98.52 True fake: scaffold gap size wrong estimation (local) 28168422 28169881 718084 719545 NC_000014.9 scf7180000172788 98.63 True fake: scaffold gap size wrong estimation (local) 28170625 28171140 720764 721279 NC_000014.9 scf7180000172788 99.61 True relocation, scaffold gap is present, inconsistency = 57783740 85956845 85969145 735489 723244 NC_000014.9 scf7180000172788 99.54 True fake: scaffold gap size wrong estimation (local) 85946331 85956049 745894 736186 NC_000014.9 scf7180000172788 99.75 True fake: scaffold gap size wrong estimation (local) 85939967 85945989 752198 746175 NC_000014.9 scf7180000172788 99.59 True fake: scaffold gap size wrong estimation (local) 85937757 85939035 754499 753221 NC_000014.9 scf7180000172788 99.61 True fake: scaffold gap size wrong estimation (local) 85935046 85935978 757184 756252 NC_000014.9 scf7180000172788 99.57 True CONTIG scf7180000172788 759545 misassembled 18435298 18436081 405 1188 NC_000014.9 scf7180000172789 100.0 True local misassembly 18436274 18436799 1189 1714 NC_000014.9 scf7180000172789 99.57 True fake: scaffold gap size wrong estimation (local) 18437390 18439289 2533 4432 NC_000014.9 scf7180000172789 99.32 True fake: scaffold gap size wrong estimation (local) 18440055 18441777 5237 6959 NC_000014.9 scf7180000172789 99.77 True fake: scaffold gap size wrong estimation (local) 18442805 18443481 7998 8674 NC_000014.9 scf7180000172789 99.85 True CONTIG scf7180000172789 8852 correct 37439869 37441559 10 1700 NC_000014.9 scf7180000172790 99.94 True fake: scaffold gap size wrong estimation (local) 37442240 37443328 2491 3579 NC_000014.9 scf7180000172790 99.91 True fake: scaffold gap size wrong estimation (local) 37443751 37444758 3894 4901 NC_000014.9 scf7180000172790 99.8 True fake: scaffold gap size wrong estimation (local) 37447071 37449962 6863 9754 NC_000014.9 scf7180000172790 99.97 True fake: scaffold gap size wrong estimation (local) 37449963 37451808 11953 13798 NC_000014.9 scf7180000172790 99.78 True local misassembly 37452070 37460089 13820 21839 NC_000014.9 scf7180000172790 99.68 True indel: indel (> 5bp) 37460099 37461171 21840 22912 NC_000014.9 scf7180000172790 99.63 True fake: scaffold gap size wrong estimation (local) 37462303 37463000 24081 24778 NC_000014.9 scf7180000172790 98.14 True fake: scaffold gap size wrong estimation (local) 37464258 37466256 25876 27874 NC_000014.9 scf7180000172790 100.0 True local misassembly 37463113 37464257 27895 29039 NC_000014.9 scf7180000172790 100.0 True CONTIG scf7180000172790 29047 correct 101790160 101790841 1171 490 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101787760 101789839 3553 1474 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101782547 101787509 9154 3713 NC_000014.9 scf7180000172791 99.94 True local misassembly 101777120 101782052 13990 9155 NC_000014.9 scf7180000172791 97.97 True fake: scaffold gap size wrong estimation (local) 101772753 101776891 18347 14209 NC_000014.9 scf7180000172791 99.98 True fake: scaffold gap size wrong estimation (local) 101771696 101772563 19352 18485 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101769101 101771248 21948 19801 NC_000014.9 scf7180000172791 99.95 True fake: scaffold gap size wrong estimation (local) 101763585 101768849 27423 22152 NC_000014.9 scf7180000172791 99.16 True fake: scaffold gap size wrong estimation (local) 101761868 101763365 29119 27622 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101749798 101761584 41154 29427 NC_000014.9 scf7180000172791 98.97 True fake: scaffold gap size wrong estimation (local) 101748819 101749368 42067 41518 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101743163 101744353 46723 45533 NC_000014.9 scf7180000172791 99.92 True fake: scaffold gap size wrong estimation (local) 101740756 101741873 49084 47967 NC_000014.9 scf7180000172791 99.91 True fake: scaffold gap size wrong estimation (local) 101728899 101740200 61067 49801 NC_000014.9 scf7180000172791 99.4 True fake: scaffold gap size wrong estimation (local) 101725880 101728705 64119 61294 NC_000014.9 scf7180000172791 99.93 True fake: scaffold gap size wrong estimation (local) 101722256 101722881 67334 66709 NC_000014.9 scf7180000172791 99.68 True fake: scaffold gap size wrong estimation (local) 101721231 101722255 68377 67353 NC_000014.9 scf7180000172791 100.0 True fake: scaffold gap size wrong estimation (local) 101718992 101720999 70851 68676 NC_000014.9 scf7180000172791 99.55 True local misassembly 101713636 101718879 76406 70852 NC_000014.9 scf7180000172791 95.31 True local misassembly 101705189 101711807 83211 76593 NC_000014.9 scf7180000172791 99.94 True fake: scaffold gap size wrong estimation (local) 101700811 101704817 87631 83626 NC_000014.9 scf7180000172791 99.95 True fake: scaffold gap size wrong estimation (local) 101699688 101700579 88694 87803 NC_000014.9 scf7180000172791 99.44 True fake: scaffold gap size wrong estimation (local) 101697319 101698876 91034 89477 NC_000014.9 scf7180000172791 99.81 True CONTIG scf7180000172791 91034 correct 80912211 80921711 9500 1 NC_000014.9 scf7180000172792 99.87 True fake: scaffold gap size wrong estimation (local) 80901186 80911968 20436 9668 NC_000014.9 scf7180000172792 99.39 True fake: scaffold gap size wrong estimation (local) 80890402 80900947 31124 20616 NC_000014.9 scf7180000172792 99.53 True fake: scaffold gap size wrong estimation (local) 80886726 80887787 34549 33487 NC_000014.9 scf7180000172792 98.21 True fake: scaffold gap size wrong estimation (local) 80880866 80886226 40551 35101 NC_000014.9 scf7180000172792 98.6 True fake: scaffold gap size wrong estimation (local) 80876449 80880642 44916 40640 NC_000014.9 scf7180000172792 99.6 True fake: scaffold gap size wrong estimation (local) 80874892 80876342 46387 44937 NC_000014.9 scf7180000172792 99.93 True fake: scaffold gap size wrong estimation (local) 80864832 80874204 56445 47074 NC_000014.9 scf7180000172792 99.88 True fake: scaffold gap size wrong estimation (local) 80859537 80864583 61619 56573 NC_000014.9 scf7180000172792 99.92 True fake: scaffold gap size wrong estimation (local) 80856958 80857987 64121 63094 NC_000014.9 scf7180000172792 99.71 True fake: scaffold gap size wrong estimation (local) 80837653 80856722 83438 64452 NC_000014.9 scf7180000172792 99.36 True fake: scaffold gap size wrong estimation (local) 80828396 80837459 92712 83649 NC_000014.9 scf7180000172792 99.87 True fake: scaffold gap size wrong estimation (local) 80826114 80828140 94990 92964 NC_000014.9 scf7180000172792 99.9 True fake: scaffold gap size wrong estimation (local) 80823220 80825913 97832 95139 NC_000014.9 scf7180000172792 99.67 True indel: stretch of mismatches 80821950 80823063 99102 97989 NC_000014.9 scf7180000172792 99.55 True fake: scaffold gap size wrong estimation (local) 80819509 80821848 101563 99262 NC_000014.9 scf7180000172792 98.33 True fake: scaffold gap size wrong estimation (local) 80812808 80819244 108266 101804 NC_000014.9 scf7180000172792 99.8 True fake: scaffold gap size wrong estimation (local) 80802228 80812611 119218 108399 NC_000014.9 scf7180000172792 95.98 True fake: scaffold gap size wrong estimation (local) 80799905 80801418 121577 120064 NC_000014.9 scf7180000172792 99.87 True fake: scaffold gap size wrong estimation (local) 80781462 80799655 139984 121777 NC_000014.9 scf7180000172792 99.93 True fake: scaffold gap size wrong estimation (local) 80769631 80781281 151790 140140 NC_000014.9 scf7180000172792 99.91 True fake: scaffold gap size wrong estimation (local) 80764507 80769312 156804 151999 NC_000014.9 scf7180000172792 99.98 True fake: scaffold gap size wrong estimation (local) 80758537 80764242 162754 157025 NC_000014.9 scf7180000172792 99.79 True fake: scaffold gap size wrong estimation (local) 80740471 80758316 180731 162886 NC_000014.9 scf7180000172792 99.83 True CONTIG scf7180000172792 183315 correct 19243036 19257411 14375 12 NC_000014.9 scf7180000172793 99.43 True fake: scaffold gap size wrong estimation (local) 19224627 19231702 33353 26309 NC_000014.9 scf7180000172793 97.7 True fake: scaffold gap size wrong estimation (local) 19216916 19224381 41113 33656 NC_000014.9 scf7180000172793 99.69 True fake: scaffold gap size wrong estimation (local) 19214519 19216718 43553 41354 NC_000014.9 scf7180000172793 99.82 True fake: scaffold gap size wrong estimation (local) 19211562 19214422 46814 43954 NC_000014.9 scf7180000172793 99.72 True fake: scaffold gap size wrong estimation (local) 19191394 19211449 67326 47067 NC_000014.9 scf7180000172793 98.01 True relocation, scaffold gap is present, inconsistency = 64888059 84102037 84105404 69855 73241 NC_000014.9 scf7180000172793 99.94 True fake: scaffold gap size wrong estimation (local) 84105694 84113551 73509 81536 NC_000014.9 scf7180000172793 95.36 True fake: scaffold gap size wrong estimation (local) 84113821 84115231 81919 83329 NC_000014.9 scf7180000172793 99.72 True CONTIG scf7180000172793 83760 misassembled 63757973 63758740 24906 25673 NC_000014.9 scf7180000172794 100.0 True relocation, scaffold gap is present, inconsistency = 45354702 18401435 18402354 27509 26590 NC_000014.9 scf7180000172794 100.0 True fake: scaffold gap size wrong estimation (local) 18399850 18401366 29307 27791 NC_000014.9 scf7180000172794 99.8 True fake: scaffold gap size wrong estimation (local) 18388275 18399627 40876 29439 NC_000014.9 scf7180000172794 99.2 True fake: scaffold gap size wrong estimation (local) 18383603 18388040 45497 41055 NC_000014.9 scf7180000172794 99.93 True fake: scaffold gap size wrong estimation (local) 18382104 18383500 46978 45581 NC_000014.9 scf7180000172794 99.86 True fake: scaffold gap size wrong estimation (local) 18380969 18381871 48157 47255 NC_000014.9 scf7180000172794 100.0 True fake: scaffold gap size wrong estimation (local) 18375276 18380809 53951 48418 NC_000014.9 scf7180000172794 99.69 True fake: scaffold gap size wrong estimation (local) 18373834 18375091 55370 54113 NC_000014.9 scf7180000172794 99.76 True fake: scaffold gap size wrong estimation (local) 18370504 18372078 58632 57058 NC_000014.9 scf7180000172794 99.24 True fake: scaffold gap size wrong estimation (local) 18364911 18369700 64159 59404 NC_000014.9 scf7180000172794 99.2 True fake: scaffold gap size wrong estimation (local) 18353253 18364663 75773 64363 NC_000014.9 scf7180000172794 99.79 True local misassembly 18334956 18349876 90694 75774 NC_000014.9 scf7180000172794 99.85 True fake: scaffold gap size wrong estimation (local) 18322687 18324427 104711 102971 NC_000014.9 scf7180000172794 99.94 True fake: scaffold gap size wrong estimation (local) 18319125 18322149 108323 105260 NC_000014.9 scf7180000172794 99.97 True fake: scaffold gap size wrong estimation (local) 18314537 18318704 112946 108698 NC_000014.9 scf7180000172794 99.88 True fake: scaffold gap size wrong estimation (local) 18313510 18314277 114575 113808 NC_000014.9 scf7180000172794 99.87 True fake: scaffold gap size wrong estimation (local) 18310926 18312438 117306 115777 NC_000014.9 scf7180000172794 99.6 True fake: scaffold gap size wrong estimation (local) 18307640 18310154 120596 118100 NC_000014.9 scf7180000172794 99.24 True fake: scaffold gap size wrong estimation (local) 18306533 18307315 121545 120763 NC_000014.9 scf7180000172794 99.74 True CONTIG scf7180000172794 121906 misassembled 31780342 31781875 1 1534 NC_000014.9 scf7180000172795 99.93 True relocation, scaffold gap is present, inconsistency = 7926160 23847441 23853940 8275 1776 NC_000014.9 scf7180000172795 99.91 True fake: scaffold gap size wrong estimation (local) 23836771 23847342 19468 8883 NC_000014.9 scf7180000172795 99.85 True fake: scaffold gap size wrong estimation (local) 23834811 23836504 21438 19727 NC_000014.9 scf7180000172795 99.88 True fake: scaffold gap size wrong estimation (local) 23819956 23832816 36058 23176 NC_000014.9 scf7180000172795 99.4 True fake: scaffold gap size wrong estimation (local) 23813685 23819400 42229 36512 NC_000014.9 scf7180000172795 99.9 True fake: scaffold gap size wrong estimation (local) 23811098 23812048 44611 43661 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 23807792 23810347 48081 45526 NC_000014.9 scf7180000172795 99.77 True fake: scaffold gap size wrong estimation (local) 23802568 23807791 53330 48107 NC_000014.9 scf7180000172795 99.98 True fake: scaffold gap size wrong estimation (local) 23799942 23802567 56357 53732 NC_000014.9 scf7180000172795 99.77 True fake: scaffold gap size wrong estimation (local) 23798197 23799941 58119 56375 NC_000014.9 scf7180000172795 99.89 True fake: scaffold gap size wrong estimation (local) 23796457 23797778 60384 59063 NC_000014.9 scf7180000172795 98.49 True local misassembly 23792772 23796151 63764 60385 NC_000014.9 scf7180000172795 99.73 True fake: scaffold gap size wrong estimation (local) 23789029 23792517 67509 64021 NC_000014.9 scf7180000172795 99.83 True fake: scaffold gap size wrong estimation (local) 23768136 23788820 88338 67627 NC_000014.9 scf7180000172795 99.82 True fake: scaffold gap size wrong estimation (local) 23766609 23767914 89956 88651 NC_000014.9 scf7180000172795 99.54 True fake: scaffold gap size wrong estimation (local) 23763358 23766186 93115 90287 NC_000014.9 scf7180000172795 99.61 True fake: scaffold gap size wrong estimation (local) 23762222 23763054 94317 93485 NC_000014.9 scf7180000172795 97.24 True local misassembly 23761407 23762134 95045 94318 NC_000014.9 scf7180000172795 99.04 True relocation, scaffold gap is present, inconsistency = 58776971 82539352 82541041 95292 96981 NC_000014.9 scf7180000172795 100.0 True relocation, inconsistency = 10376357 72161252 72162994 98723 96982 NC_000014.9 scf7180000172795 99.83 True indel: indel (> 5bp) 72157920 72161134 102061 98848 NC_000014.9 scf7180000172795 99.72 True relocation, inconsistency = -34000662 106157050 106158581 103593 102062 NC_000014.9 scf7180000172795 99.31 True fake: scaffold gap size wrong estimation (local) 106155821 106157011 105407 104216 NC_000014.9 scf7180000172795 99.16 True fake: scaffold gap size wrong estimation (local) 106154167 106155107 108781 107841 NC_000014.9 scf7180000172795 99.68 True relocation, scaffold gap is present, inconsistency = 89781 106062945 106064075 110222 109092 NC_000014.9 scf7180000172795 98.5 True fake: scaffold gap size wrong estimation (local) 106061332 106062065 112227 111494 NC_000014.9 scf7180000172795 99.73 True relocation, scaffold gap is present, inconsistency = 82304225 23752612 23756824 116722 112510 NC_000014.9 scf7180000172795 99.86 True fake: not a misassembly (possible transposable element) 106064270 106066019 118572 116823 NC_000014.9 scf7180000172795 99.83 True fake: not a misassembly (possible transposable element) 23747790 23752350 123183 118623 NC_000014.9 scf7180000172795 99.87 True fake: scaffold gap size wrong estimation (local) 23745748 23747191 125242 123800 NC_000014.9 scf7180000172795 99.79 True fake: scaffold gap size wrong estimation (local) 23743233 23745517 127621 125337 NC_000014.9 scf7180000172795 99.56 True fake: scaffold gap size wrong estimation (local) 23740780 23741756 130006 129030 NC_000014.9 scf7180000172795 99.69 True fake: scaffold gap size wrong estimation (local) 23737555 23738695 132897 131757 NC_000014.9 scf7180000172795 99.74 True fake: scaffold gap size wrong estimation (local) 23716758 23736425 154257 133984 NC_000014.9 scf7180000172795 96.9 True fake: scaffold gap size wrong estimation (local) 23714791 23716525 156209 154475 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 23706631 23713533 164226 157324 NC_000014.9 scf7180000172795 99.96 True fake: scaffold gap size wrong estimation (local) 23688289 23705826 182871 164989 NC_000014.9 scf7180000172795 97.3 True fake: scaffold gap size wrong estimation (local) 23687506 23688137 183739 183108 NC_000014.9 scf7180000172795 99.21 True fake: scaffold gap size wrong estimation (local) 23671902 23687277 199200 183826 NC_000014.9 scf7180000172795 99.91 True fake: scaffold gap size wrong estimation (local) 23659763 23671759 211300 199315 NC_000014.9 scf7180000172795 99.67 True fake: scaffold gap size wrong estimation (local) 23656190 23659565 214819 211452 NC_000014.9 scf7180000172795 99.55 True fake: scaffold gap size wrong estimation (local) 23652738 23655516 218210 215432 NC_000014.9 scf7180000172795 99.89 True fake: scaffold gap size wrong estimation (local) 23636046 23652557 235278 218365 NC_000014.9 scf7180000172795 97.53 True indel: indel (> 5bp) 23634333 23636026 237057 235364 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 23629203 23634071 242211 237343 NC_000014.9 scf7180000172795 99.82 True fake: scaffold gap size wrong estimation (local) 23626882 23629128 245081 242851 NC_000014.9 scf7180000172795 99.1 True fake: scaffold gap size wrong estimation (local) 23611899 23626474 260369 245742 NC_000014.9 scf7180000172795 99.87 True fake: scaffold gap size wrong estimation (local) 23604351 23611779 267851 260399 NC_000014.9 scf7180000172795 99.78 True indel: indel (> 5bp) 23598830 23604241 273377 267954 NC_000014.9 scf7180000172795 98.59 True fake: scaffold gap size wrong estimation (local) 23596724 23597571 275472 274625 NC_000014.9 scf7180000172795 99.76 True fake: scaffold gap size wrong estimation (local) 23594927 23596155 277402 276174 NC_000014.9 scf7180000172795 99.84 True fake: scaffold gap size wrong estimation (local) 23594245 23594926 278106 277425 NC_000014.9 scf7180000172795 97.95 True fake: scaffold gap size wrong estimation (local) 23592401 23593680 280078 278799 NC_000014.9 scf7180000172795 96.33 True fake: scaffold gap size wrong estimation (local) 23591020 23591730 281350 280640 NC_000014.9 scf7180000172795 99.86 True fake: scaffold gap size wrong estimation (local) 23588364 23590860 284138 281634 NC_000014.9 scf7180000172795 99.68 True fake: scaffold gap size wrong estimation (local) 23586096 23586625 286283 285754 NC_000014.9 scf7180000172795 98.3 True relocation, scaffold gap is present, inconsistency = 12661683 36249817 36292953 287792 330737 NC_000014.9 scf7180000172795 99.42 True fake: not a misassembly (possible transposable element) 88854773 88855826 330738 331791 NC_000014.9 scf7180000172795 100.0 True fake: not a misassembly (possible transposable element) 36293371 36302235 331812 340699 NC_000014.9 scf7180000172795 99.85 True fake: scaffold gap size wrong estimation (local) 36302500 36339229 340950 377611 NC_000014.9 scf7180000172795 98.82 True fake: scaffold gap size wrong estimation (local) 36340931 36341842 379021 379902 NC_000014.9 scf7180000172795 96.6 True fake: scaffold gap size wrong estimation (local) 36355256 36357430 395657 397831 NC_000014.9 scf7180000172795 99.77 True fake: not a misassembly (possible transposable element) 76633503 76634518 398867 397852 NC_000014.9 scf7180000172795 99.61 True fake: not a misassembly (possible transposable element) 36358051 36358908 398868 399725 NC_000014.9 scf7180000172795 99.67 True relocation, scaffold gap is present, inconsistency = 40269163 76629269 76631597 403251 400923 NC_000014.9 scf7180000172795 99.48 True fake: scaffold gap size wrong estimation (local) 76627253 76629081 405305 403477 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76620046 76626947 412472 405572 NC_000014.9 scf7180000172795 99.83 True fake: scaffold gap size wrong estimation (local) 76615415 76618664 416912 413663 NC_000014.9 scf7180000172795 99.88 True fake: scaffold gap size wrong estimation (local) 76610500 76615298 422907 418115 NC_000014.9 scf7180000172795 99.73 True fake: scaffold gap size wrong estimation (local) 76607172 76608798 426141 424491 NC_000014.9 scf7180000172795 99.57 True fake: scaffold gap size wrong estimation (local) 76597377 76606914 435958 426428 NC_000014.9 scf7180000172795 99.67 True fake: scaffold gap size wrong estimation (local) 76589831 76596130 443613 437065 NC_000014.9 scf7180000172795 96.29 True fake: scaffold gap size wrong estimation (local) 76589139 76589718 444288 443709 NC_000014.9 scf7180000172795 99.66 True fake: scaffold gap size wrong estimation (local) 76588301 76588972 445130 444458 NC_000014.9 scf7180000172795 99.7 True fake: scaffold gap size wrong estimation (local) 76573212 76588101 460365 445256 NC_000014.9 scf7180000172795 97.72 True fake: scaffold gap size wrong estimation (local) 76571986 76572611 461557 460932 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76571144 76571805 464436 463775 NC_000014.9 scf7180000172795 99.85 True fake: scaffold gap size wrong estimation (local) 76567741 76570056 467801 465486 NC_000014.9 scf7180000172795 99.87 True fake: scaffold gap size wrong estimation (local) 76565883 76566854 469743 468772 NC_000014.9 scf7180000172795 99.9 True indel: indel (<= 5bp) 76564881 76565881 470744 469744 NC_000014.9 scf7180000172795 99.4 True local misassembly 76563526 76564778 471997 470745 NC_000014.9 scf7180000172795 99.44 True fake: scaffold gap size wrong estimation (local) 76562120 76563342 473475 472253 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76561360 76562119 474826 474067 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76558424 76560631 477337 475025 NC_000014.9 scf7180000172795 95.99 True fake: scaffold gap size wrong estimation (local) 76553575 76558250 482228 477502 NC_000014.9 scf7180000172795 99.89 True fake: scaffold gap size wrong estimation (local) 76551890 76553457 483846 482279 NC_000014.9 scf7180000172795 99.94 True fake: scaffold gap size wrong estimation (local) 76550284 76551786 485483 483981 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76543050 76549306 492791 486506 NC_000014.9 scf7180000172795 98.04 True fake: scaffold gap size wrong estimation (local) 76539292 76542925 496531 492898 NC_000014.9 scf7180000172795 99.67 True fake: scaffold gap size wrong estimation (local) 76537007 76538849 498862 497020 NC_000014.9 scf7180000172795 99.73 True fake: scaffold gap size wrong estimation (local) 76535580 76536391 500512 499679 NC_000014.9 scf7180000172795 99.51 True fake: scaffold gap size wrong estimation (local) 76533053 76534686 503094 501393 NC_000014.9 scf7180000172795 95.54 True fake: scaffold gap size wrong estimation (local) 76530833 76532849 505420 503404 NC_000014.9 scf7180000172795 98.76 True local misassembly 76529979 76530621 506063 505421 NC_000014.9 scf7180000172795 99.38 True fake: scaffold gap size wrong estimation (local) 76526347 76528456 509915 507666 NC_000014.9 scf7180000172795 99.9 True fake: scaffold gap size wrong estimation (local) 76516709 76526137 519389 509953 NC_000014.9 scf7180000172795 99.72 True fake: scaffold gap size wrong estimation (local) 76507941 76516324 528130 519746 NC_000014.9 scf7180000172795 99.88 True fake: scaffold gap size wrong estimation (local) 76495560 76507790 540461 528286 NC_000014.9 scf7180000172795 99.25 True fake: scaffold gap size wrong estimation (local) 76485514 76494389 550424 541559 NC_000014.9 scf7180000172795 99.63 True fake: scaffold gap size wrong estimation (local) 76484023 76485243 551848 550628 NC_000014.9 scf7180000172795 99.92 True indel: indel (<= 5bp) 76479931 76484020 555938 551849 NC_000014.9 scf7180000172795 99.39 True local misassembly 76478441 76479930 557533 556044 NC_000014.9 scf7180000172795 99.93 True indel: indel (<= 5bp) 76476083 76478438 559889 557534 NC_000014.9 scf7180000172795 98.9 True indel: indel (> 5bp) 76475346 76475997 560541 559890 NC_000014.9 scf7180000172795 99.69 True fake: scaffold gap size wrong estimation (local) 76474822 76475345 562243 561720 NC_000014.9 scf7180000172795 99.05 True indel: indel (<= 5bp) 76470186 76474816 566874 562244 NC_000014.9 scf7180000172795 99.35 True fake: scaffold gap size wrong estimation (local) 76467508 76469934 569486 567060 NC_000014.9 scf7180000172795 99.96 True fake: scaffold gap size wrong estimation (local) 76463649 76466782 573303 570133 NC_000014.9 scf7180000172795 99.46 True fake: scaffold gap size wrong estimation (local) 76461767 76463452 575199 573511 NC_000014.9 scf7180000172795 99.82 True indel: indel (<= 5bp) 76459059 76461645 577904 575318 NC_000014.9 scf7180000172795 99.92 True fake: scaffold gap size wrong estimation (local) 76455155 76458849 581942 578066 NC_000014.9 scf7180000172795 99.27 True fake: scaffold gap size wrong estimation (local) 76452627 76453827 584250 583051 NC_000014.9 scf7180000172795 99.92 True fake: scaffold gap size wrong estimation (local) 76449768 76451785 587127 585110 NC_000014.9 scf7180000172795 98.86 True fake: scaffold gap size wrong estimation (local) 76448515 76449302 588564 587777 NC_000014.9 scf7180000172795 97.46 True local misassembly 76447272 76448351 589644 588565 NC_000014.9 scf7180000172795 99.54 True fake: scaffold gap size wrong estimation (local) 76446375 76447271 590832 589936 NC_000014.9 scf7180000172795 99.22 True fake: scaffold gap size wrong estimation (local) 76443097 76444177 594002 592922 NC_000014.9 scf7180000172795 100.0 True local misassembly 76444295 76445122 594850 594023 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76438660 76442286 600327 596701 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76432884 76438437 606160 600583 NC_000014.9 scf7180000172795 99.78 True fake: scaffold gap size wrong estimation (local) 76429733 76432672 609300 606361 NC_000014.9 scf7180000172795 99.97 True fake: scaffold gap size wrong estimation (local) 76422483 76429494 616539 609487 NC_000014.9 scf7180000172795 99.21 True fake: scaffold gap size wrong estimation (local) 76419200 76422219 619728 616712 NC_000014.9 scf7180000172795 99.87 True fake: scaffold gap size wrong estimation (local) 76416718 76417956 622169 620931 NC_000014.9 scf7180000172795 100.0 True fake: scaffold gap size wrong estimation (local) 76414692 76415458 624241 623475 NC_000014.9 scf7180000172795 99.87 True CONTIG scf7180000172795 624241 misassembled 18240545 18241077 872 340 NC_000014.9 scf7180000172796 99.44 True fake: scaffold gap size wrong estimation (extensive) 18230800 18231351 2495 1944 NC_000014.9 scf7180000172796 100.0 True relocation, inconsistency = -8015 18238195 18238814 3115 2496 NC_000014.9 scf7180000172796 99.69 True relocation, inconsistency = -31574 18268935 18269768 3949 3116 NC_000014.9 scf7180000172796 100.0 True fake: not a misassembly (possible transposable element) 18227275 18228576 5574 4273 NC_000014.9 scf7180000172796 99.92 True fake: not a misassembly (possible transposable element) 18266560 18267137 6671 6094 NC_000014.9 scf7180000172796 100.0 True fake: not a misassembly (possible transposable element) 18224975 18225549 7908 7334 NC_000014.9 scf7180000172796 99.83 True fake: not a misassembly (possible transposable element) 18264111 18264667 8528 7972 NC_000014.9 scf7180000172796 96.77 True fake: scaffold gap size wrong estimation (local) 18261102 18262030 11375 10447 NC_000014.9 scf7180000172796 99.89 True CONTIG scf7180000172796 13812 misassembled 38680689 38683944 3249 1 NC_000014.9 scf7180000172797 99.72 True fake: scaffold gap size wrong estimation (local) 38677257 38680499 6637 3368 NC_000014.9 scf7180000172797 99.75 True fake: scaffold gap size wrong estimation (local) 38674013 38674740 9654 8927 NC_000014.9 scf7180000172797 99.18 True fake: scaffold gap size wrong estimation (local) 38649054 38672228 34408 11236 NC_000014.9 scf7180000172797 99.87 True fake: scaffold gap size wrong estimation (local) 38640976 38648906 42453 34511 NC_000014.9 scf7180000172797 99.91 True fake: scaffold gap size wrong estimation (local) 38629608 38635041 56200 50760 NC_000014.9 scf7180000172797 99.82 True fake: scaffold gap size wrong estimation (local) 38609925 38628371 75771 57368 NC_000014.9 scf7180000172797 99.24 True fake: scaffold gap size wrong estimation (local) 38598858 38609947 87402 75853 NC_000014.9 scf7180000172797 96.2 True fake: scaffold gap size wrong estimation (local) 38597148 38598061 89659 88750 NC_000014.9 scf7180000172797 99.44 True fake: scaffold gap size wrong estimation (local) 38582788 38595776 104126 91235 NC_000014.9 scf7180000172797 98.79 True fake: scaffold gap size wrong estimation (local) 38579029 38582705 107926 104250 NC_000014.9 scf7180000172797 99.84 True fake: scaffold gap size wrong estimation (local) 38563536 38578881 123849 108145 NC_000014.9 scf7180000172797 98.0 True fake: scaffold gap size wrong estimation (local) 38557146 38563393 130231 123932 NC_000014.9 scf7180000172797 99.47 True fake: scaffold gap size wrong estimation (local) 38549066 38556963 138251 130354 NC_000014.9 scf7180000172797 99.91 True fake: scaffold gap size wrong estimation (local) 38543409 38548806 143713 138455 NC_000014.9 scf7180000172797 97.27 True fake: scaffold gap size wrong estimation (local) 38541010 38543265 146103 143848 NC_000014.9 scf7180000172797 99.91 True fake: scaffold gap size wrong estimation (local) 38526063 38540814 160753 146227 NC_000014.9 scf7180000172797 96.15 True fake: scaffold gap size wrong estimation (local) 38524968 38525785 161749 160932 NC_000014.9 scf7180000172797 99.88 True local misassembly 38525772 38527034 163521 162259 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 38489298 38525409 199848 163747 NC_000014.9 scf7180000172797 99.77 True fake: not a misassembly (possible transposable element) 54205075 54206261 201053 199869 NC_000014.9 scf7180000172797 99.58 True fake: not a misassembly (possible transposable element) 38452939 38489321 237452 201059 NC_000014.9 scf7180000172797 99.82 True fake: scaffold gap size wrong estimation (local) 38450179 38453007 240752 237922 NC_000014.9 scf7180000172797 99.68 True fake: scaffold gap size wrong estimation (local) 38447744 38449997 243571 241318 NC_000014.9 scf7180000172797 99.82 True fake: scaffold gap size wrong estimation (local) 38428413 38447469 262783 243854 NC_000014.9 scf7180000172797 99.06 True fake: scaffold gap size wrong estimation (local) 38416472 38428209 274677 262936 NC_000014.9 scf7180000172797 99.82 True fake: scaffold gap size wrong estimation (local) 38414325 38415695 276834 275464 NC_000014.9 scf7180000172797 99.93 True indel: stretch of mismatches 38381490 38414258 309598 276901 NC_000014.9 scf7180000172797 99.52 True fake: scaffold gap size wrong estimation (local) 38378049 38381504 313266 309821 NC_000014.9 scf7180000172797 99.42 True fake: scaffold gap size wrong estimation (local) 38373568 38377773 317633 313427 NC_000014.9 scf7180000172797 99.76 True fake: scaffold gap size wrong estimation (local) 38371073 38373296 320068 317843 NC_000014.9 scf7180000172797 99.64 True fake: scaffold gap size wrong estimation (local) 38364057 38370736 327017 320339 NC_000014.9 scf7180000172797 99.61 True fake: scaffold gap size wrong estimation (local) 38362535 38363789 328535 327281 NC_000014.9 scf7180000172797 99.76 True fake: scaffold gap size wrong estimation (local) 38349746 38362261 341622 328762 NC_000014.9 scf7180000172797 97.32 True fake: scaffold gap size wrong estimation (local) 38348467 38349936 344073 342605 NC_000014.9 scf7180000172797 99.8 True relocation, inconsistency = 50574791 88924732 88929278 344078 348523 NC_000014.9 scf7180000172797 97.61 True fake: scaffold gap size wrong estimation (local) 88929340 88932170 348642 351472 NC_000014.9 scf7180000172797 99.93 True fake: scaffold gap size wrong estimation (local) 88932333 88938219 351745 357555 NC_000014.9 scf7180000172797 98.2 True fake: scaffold gap size wrong estimation (local) 88938430 88947016 357749 366227 NC_000014.9 scf7180000172797 97.94 True fake: scaffold gap size wrong estimation (local) 88947196 88965961 366361 385121 NC_000014.9 scf7180000172797 99.83 True fake: scaffold gap size wrong estimation (local) 88966223 88972717 385259 391857 NC_000014.9 scf7180000172797 99.85 True fake: scaffold gap size wrong estimation (local) 88973403 88974645 392384 393616 NC_000014.9 scf7180000172797 98.94 True fake: scaffold gap size wrong estimation (local) 88974817 88978560 393771 397514 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 88978821 88986379 397705 405238 NC_000014.9 scf7180000172797 99.65 True fake: scaffold gap size wrong estimation (local) 88986943 88993491 405676 412326 NC_000014.9 scf7180000172797 98.53 True fake: scaffold gap size wrong estimation (local) 88993640 88994629 412437 413426 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 88994810 89016502 413548 435236 NC_000014.9 scf7180000172797 99.85 True fake: scaffold gap size wrong estimation (local) 89016587 89018720 435339 437472 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 89018855 89020109 437680 438934 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 89020400 89031849 439118 450597 NC_000014.9 scf7180000172797 99.91 True fake: scaffold gap size wrong estimation (local) 89032041 89038380 450715 457058 NC_000014.9 scf7180000172797 99.91 True fake: scaffold gap size wrong estimation (local) 89038711 89039451 457409 458149 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 89039599 89044011 458249 462703 NC_000014.9 scf7180000172797 99.98 True fake: scaffold gap size wrong estimation (local) 89044260 89047152 462828 465692 NC_000014.9 scf7180000172797 98.99 True fake: scaffold gap size wrong estimation (local) 89047292 89050092 465814 468645 NC_000014.9 scf7180000172797 99.61 True fake: scaffold gap size wrong estimation (local) 89050320 89052991 468855 471548 NC_000014.9 scf7180000172797 99.93 True fake: scaffold gap size wrong estimation (local) 89052937 89057021 472821 476902 NC_000014.9 scf7180000172797 97.37 True fake: scaffold gap size wrong estimation (local) 89057119 89072672 477008 492566 NC_000014.9 scf7180000172797 99.25 True fake: scaffold gap size wrong estimation (local) 89072869 89073417 493487 494035 NC_000014.9 scf7180000172797 100.0 True fake: scaffold gap size wrong estimation (local) 89074588 89080781 495002 501518 NC_000014.9 scf7180000172797 95.04 True fake: scaffold gap size wrong estimation (local) 89081031 89099028 501685 519709 NC_000014.9 scf7180000172797 99.84 True fake: scaffold gap size wrong estimation (local) 89099288 89099802 520117 520631 NC_000014.9 scf7180000172797 100.0 True CONTIG scf7180000172797 521723 misassembled 35256589 35259793 17 3357 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35260054 35261477 3627 5050 NC_000014.9 scf7180000172798 99.79 True fake: scaffold gap size wrong estimation (local) 35261689 35263475 5209 6995 NC_000014.9 scf7180000172798 99.94 True fake: scaffold gap size wrong estimation (local) 35263672 35266014 7232 9601 NC_000014.9 scf7180000172798 99.79 True fake: scaffold gap size wrong estimation (local) 35266331 35267553 10016 11238 NC_000014.9 scf7180000172798 100.0 True indel: indel (<= 5bp) 35267737 35268347 11425 12035 NC_000014.9 scf7180000172798 99.51 True fake: scaffold gap size wrong estimation (local) 35268855 35270828 12554 14527 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35271429 35274305 15035 17911 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35274306 35275798 18625 20117 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35275799 35277272 20138 21611 NC_000014.9 scf7180000172798 99.86 True indel: indel (> 5bp) 35277273 35278326 21619 22672 NC_000014.9 scf7180000172798 98.77 True fake: scaffold gap size wrong estimation (local) 35278438 35279143 22800 23505 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35279313 35279871 23695 24253 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35280841 35282803 25167 27129 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35282995 35291240 27437 35556 NC_000014.9 scf7180000172798 97.64 True fake: scaffold gap size wrong estimation (local) 35291499 35294156 35778 38423 NC_000014.9 scf7180000172798 99.55 True fake: scaffold gap size wrong estimation (local) 35294291 35295495 38523 39727 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35295707 35296430 39863 40586 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35296547 35297120 40892 41465 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35297479 35298786 41552 42859 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35299613 35301260 43809 45456 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35301508 35304045 45671 48208 NC_000014.9 scf7180000172798 99.8 True fake: scaffold gap size wrong estimation (local) 35304731 35306504 48994 50767 NC_000014.9 scf7180000172798 99.83 True fake: scaffold gap size wrong estimation (local) 35307505 35308173 51374 52042 NC_000014.9 scf7180000172798 96.86 True local misassembly 35308311 35309546 52043 53278 NC_000014.9 scf7180000172798 98.38 True fake: scaffold gap size wrong estimation (local) 35310128 35312201 53876 55947 NC_000014.9 scf7180000172798 99.9 True fake: scaffold gap size wrong estimation (local) 35312520 35316182 56229 59890 NC_000014.9 scf7180000172798 99.95 True fake: scaffold gap size wrong estimation (local) 35316626 35319370 60450 63146 NC_000014.9 scf7180000172798 98.09 True fake: scaffold gap size wrong estimation (local) 35319573 35320132 63238 63797 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35320340 35321334 64136 65130 NC_000014.9 scf7180000172798 99.8 True fake: scaffold gap size wrong estimation (local) 35322346 35323006 65716 66376 NC_000014.9 scf7180000172798 96.97 True fake: scaffold gap size wrong estimation (local) 35323277 35326798 67122 70642 NC_000014.9 scf7180000172798 99.63 True fake: scaffold gap size wrong estimation (local) 35327071 35328738 70864 72531 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35329730 35330251 73301 73822 NC_000014.9 scf7180000172798 96.17 True fake: scaffold gap size wrong estimation (local) 35331289 35334774 75029 78522 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35335251 35336165 79015 79929 NC_000014.9 scf7180000172798 100.0 True indel: indel (<= 5bp) 35336289 35338423 80052 82186 NC_000014.9 scf7180000172798 99.81 True fake: scaffold gap size wrong estimation (local) 35338589 35343024 82314 86758 NC_000014.9 scf7180000172798 99.75 True fake: not a misassembly (possible transposable element) 72972072 72972725 86759 87412 NC_000014.9 scf7180000172798 99.85 True fake: not a misassembly (possible transposable element) 35343049 35345674 87476 89986 NC_000014.9 scf7180000172798 95.05 True fake: scaffold gap size wrong estimation (local) 35345990 35348685 90401 93096 NC_000014.9 scf7180000172798 99.93 True fake: scaffold gap size wrong estimation (local) 35349240 35351212 93692 95586 NC_000014.9 scf7180000172798 95.7 True fake: scaffold gap size wrong estimation (local) 35351323 35354525 95748 98950 NC_000014.9 scf7180000172798 99.78 True fake: scaffold gap size wrong estimation (local) 35354740 35360150 99253 104629 NC_000014.9 scf7180000172798 98.62 True fake: scaffold gap size wrong estimation (local) 35360339 35361978 104724 106393 NC_000014.9 scf7180000172798 98.79 True fake: scaffold gap size wrong estimation (local) 35362145 35371854 106564 115873 NC_000014.9 scf7180000172798 95.77 True fake: scaffold gap size wrong estimation (local) 35371942 35373216 115948 117222 NC_000014.9 scf7180000172798 99.69 True fake: scaffold gap size wrong estimation (local) 35374132 35375067 118279 119214 NC_000014.9 scf7180000172798 99.89 True fake: scaffold gap size wrong estimation (local) 35376020 35376866 119567 120413 NC_000014.9 scf7180000172798 98.11 True fake: scaffold gap size wrong estimation (local) 35376867 35378015 120436 121584 NC_000014.9 scf7180000172798 99.56 True fake: scaffold gap size wrong estimation (local) 35378366 35378909 122296 122839 NC_000014.9 scf7180000172798 99.82 True fake: scaffold gap size wrong estimation (local) 35379002 35379901 122958 123857 NC_000014.9 scf7180000172798 99.11 True fake: scaffold gap size wrong estimation (local) 35382955 35391680 125809 134538 NC_000014.9 scf7180000172798 99.7 True indel: indel (> 5bp) 35391916 35392530 134759 135373 NC_000014.9 scf7180000172798 99.84 True fake: scaffold gap size wrong estimation (local) 35392726 35393525 135624 136423 NC_000014.9 scf7180000172798 99.62 True fake: scaffold gap size wrong estimation (local) 35393642 35395041 136571 137970 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35397187 35398758 140078 141649 NC_000014.9 scf7180000172798 98.6 True fake: scaffold gap size wrong estimation (local) 35398891 35399722 141812 142643 NC_000014.9 scf7180000172798 99.76 True fake: scaffold gap size wrong estimation (local) 35399974 35407869 142766 150704 NC_000014.9 scf7180000172798 99.48 True fake: scaffold gap size wrong estimation (local) 35407968 35408814 150852 151698 NC_000014.9 scf7180000172798 99.65 True fake: scaffold gap size wrong estimation (local) 35410682 35412388 153396 155217 NC_000014.9 scf7180000172798 99.75 True fake: scaffold gap size wrong estimation (local) 35412557 35413809 155433 156685 NC_000014.9 scf7180000172798 99.92 True fake: scaffold gap size wrong estimation (local) 35414347 35417258 157209 160120 NC_000014.9 scf7180000172798 99.79 True fake: scaffold gap size wrong estimation (local) 35417437 35420776 160251 163608 NC_000014.9 scf7180000172798 99.7 True fake: scaffold gap size wrong estimation (local) 35421261 35422686 163905 165330 NC_000014.9 scf7180000172798 99.93 True fake: scaffold gap size wrong estimation (local) 35423449 35425611 166437 168599 NC_000014.9 scf7180000172798 99.95 True fake: scaffold gap size wrong estimation (local) 35425612 35426402 169098 169888 NC_000014.9 scf7180000172798 100.0 True local misassembly 35426686 35427798 169889 171001 NC_000014.9 scf7180000172798 98.2 True fake: scaffold gap size wrong estimation (local) 35427799 35429442 171015 172658 NC_000014.9 scf7180000172798 99.51 True fake: scaffold gap size wrong estimation (local) 35429667 35431712 172837 174882 NC_000014.9 scf7180000172798 99.61 True fake: scaffold gap size wrong estimation (local) 35431875 35434346 174965 177436 NC_000014.9 scf7180000172798 99.76 True fake: scaffold gap size wrong estimation (local) 35434435 35437770 177581 180937 NC_000014.9 scf7180000172798 99.33 True fake: scaffold gap size wrong estimation (local) 35438826 35440764 181853 183896 NC_000014.9 scf7180000172798 96.46 True fake: scaffold gap size wrong estimation (local) 35441106 35447615 184357 190997 NC_000014.9 scf7180000172798 98.22 True fake: scaffold gap size wrong estimation (local) 35448949 35449732 191413 192196 NC_000014.9 scf7180000172798 99.87 True fake: scaffold gap size wrong estimation (local) 35450353 35451413 193556 194616 NC_000014.9 scf7180000172798 99.62 True fake: scaffold gap size wrong estimation (local) 35451717 35455051 195023 198360 NC_000014.9 scf7180000172798 99.76 True fake: scaffold gap size wrong estimation (local) 35455476 35456155 198545 199224 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 35456156 35458018 199481 201343 NC_000014.9 scf7180000172798 99.89 True indel: indel (<= 5bp) 35458184 35461904 201507 205219 NC_000014.9 scf7180000172798 99.65 True fake: scaffold gap size wrong estimation (local) 35462048 35465420 205345 208714 NC_000014.9 scf7180000172798 99.46 True fake: scaffold gap size wrong estimation (local) 35465507 35468959 208812 212264 NC_000014.9 scf7180000172798 99.97 True fake: scaffold gap size wrong estimation (local) 35469208 35474386 212527 217705 NC_000014.9 scf7180000172798 99.98 True relocation, inconsistency = 61728487 97202874 97221547 236367 217706 NC_000014.9 scf7180000172798 99.65 True fake: scaffold gap size wrong estimation (local) 97197562 97202697 241601 236466 NC_000014.9 scf7180000172798 99.92 True fake: scaffold gap size wrong estimation (local) 97196727 97197299 242341 241769 NC_000014.9 scf7180000172798 100.0 True indel: indel (<= 5bp) 97195571 97196726 243498 242343 NC_000014.9 scf7180000172798 99.39 True fake: scaffold gap size wrong estimation (local) 97193722 97195570 245800 243952 NC_000014.9 scf7180000172798 98.76 True indel: indel (<= 5bp) 97192514 97193720 247007 245801 NC_000014.9 scf7180000172798 99.59 True fake: scaffold gap size wrong estimation (local) 97187980 97189458 251516 250038 NC_000014.9 scf7180000172798 99.93 True local misassembly 97188017 97190769 254339 251587 NC_000014.9 scf7180000172798 99.93 True fake: scaffold gap size wrong estimation (local) 97167494 97187229 274654 255008 NC_000014.9 scf7180000172798 99.46 True fake: scaffold gap size wrong estimation (local) 97166224 97166883 275997 275338 NC_000014.9 scf7180000172798 99.55 True fake: scaffold gap size wrong estimation (local) 97164307 97166127 277991 276171 NC_000014.9 scf7180000172798 99.73 True indel: indel (<= 5bp) 97163520 97164305 278777 277992 NC_000014.9 scf7180000172798 99.87 True fake: scaffold gap size wrong estimation (local) 97161935 97163184 280061 278812 NC_000014.9 scf7180000172798 99.92 True fake: scaffold gap size wrong estimation (local) 97158099 97161168 284210 281141 NC_000014.9 scf7180000172798 99.9 True fake: scaffold gap size wrong estimation (local) 97146711 97157839 295477 284463 NC_000014.9 scf7180000172798 98.83 True fake: scaffold gap size wrong estimation (local) 97141010 97146489 301547 296065 NC_000014.9 scf7180000172798 99.65 True fake: scaffold gap size wrong estimation (local) 97109291 97140774 333458 301773 NC_000014.9 scf7180000172798 98.66 True fake: scaffold gap size wrong estimation (local) 97093598 97109105 349118 333613 NC_000014.9 scf7180000172798 99.88 True fake: scaffold gap size wrong estimation (local) 97091850 97093420 350785 349215 NC_000014.9 scf7180000172798 100.0 True fake: not a misassembly (possible transposable element) 90914513 90915580 350898 351965 NC_000014.9 scf7180000172798 100.0 True fake: not a misassembly (possible transposable element) 97085024 97091693 358483 352010 NC_000014.9 scf7180000172798 97.05 True fake: not a misassembly (possible transposable element) 87527615 87529273 360162 358504 NC_000014.9 scf7180000172798 100.0 True fake: not a misassembly (possible transposable element) 97084148 97084740 360755 360163 NC_000014.9 scf7180000172798 100.0 True local misassembly 97083527 97084147 361779 361159 NC_000014.9 scf7180000172798 95.81 True fake: scaffold gap size wrong estimation (local) 97060495 97083381 385010 361905 NC_000014.9 scf7180000172798 97.78 True fake: scaffold gap size wrong estimation (local) 97034659 97060345 411280 385739 NC_000014.9 scf7180000172798 99.34 True fake: scaffold gap size wrong estimation (local) 97015883 97034408 430014 411473 NC_000014.9 scf7180000172798 99.81 True fake: scaffold gap size wrong estimation (local) 97003515 97015749 442474 430136 NC_000014.9 scf7180000172798 98.03 True fake: scaffold gap size wrong estimation (local) 96972603 97003052 473371 442952 NC_000014.9 scf7180000172798 99.81 True fake: scaffold gap size wrong estimation (local) 96952814 96972324 492952 473641 NC_000014.9 scf7180000172798 98.82 True fake: scaffold gap size wrong estimation (local) 96938691 96952789 507158 493082 NC_000014.9 scf7180000172798 99.44 True fake: scaffold gap size wrong estimation (local) 96933184 96938482 512659 507360 NC_000014.9 scf7180000172798 99.85 True fake: scaffold gap size wrong estimation (local) 96926610 96931815 519214 513957 NC_000014.9 scf7180000172798 99.83 True fake: scaffold gap size wrong estimation (local) 96924662 96926279 521073 519454 NC_000014.9 scf7180000172798 99.69 True fake: scaffold gap size wrong estimation (local) 96923832 96924514 521860 521178 NC_000014.9 scf7180000172798 99.56 True indel: indel (> 5bp) 96922170 96923831 523561 521900 NC_000014.9 scf7180000172798 99.94 True indel: indel (<= 5bp) 96921531 96922169 524201 523563 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 96918488 96921530 527695 524653 NC_000014.9 scf7180000172798 99.74 True local misassembly 96915306 96918487 531044 527863 NC_000014.9 scf7180000172798 99.4 True local misassembly 96915819 96916489 532031 531361 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 96891139 96915158 555251 532052 NC_000014.9 scf7180000172798 95.86 True local misassembly 96891964 96892540 555850 555274 NC_000014.9 scf7180000172798 99.83 True fake: scaffold gap size wrong estimation (local) 96884452 96891177 563845 557120 NC_000014.9 scf7180000172798 99.88 True fake: scaffold gap size wrong estimation (local) 96879720 96883072 568483 565156 NC_000014.9 scf7180000172798 99.1 True fake: not a misassembly (possible transposable element) 21360255 21361326 568484 569555 NC_000014.9 scf7180000172798 99.82 True fake: not a misassembly (possible transposable element) 96868969 96879750 580400 569576 NC_000014.9 scf7180000172798 99.94 True fake: scaffold gap size wrong estimation (local) 96856904 96868809 592352 580496 NC_000014.9 scf7180000172798 99.52 True fake: scaffold gap size wrong estimation (local) 96824919 96856713 624324 592512 NC_000014.9 scf7180000172798 99.63 True fake: scaffold gap size wrong estimation (local) 96811167 96824716 638023 624457 NC_000014.9 scf7180000172798 99.95 True fake: scaffold gap size wrong estimation (local) 96809803 96810965 639319 638157 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 96796793 96809568 652306 639569 NC_000014.9 scf7180000172798 99.22 True fake: scaffold gap size wrong estimation (local) 96785404 96796605 663660 652456 NC_000014.9 scf7180000172798 99.59 True fake: scaffold gap size wrong estimation (local) 96783033 96784609 665934 664358 NC_000014.9 scf7180000172798 99.81 True fake: scaffold gap size wrong estimation (local) 96781800 96782807 667164 666157 NC_000014.9 scf7180000172798 97.62 True indel: indel (<= 5bp) 96777382 96781794 671577 667165 NC_000014.9 scf7180000172798 99.86 True fake: scaffold gap size wrong estimation (local) 96776519 96777381 672509 671647 NC_000014.9 scf7180000172798 99.65 True fake: scaffold gap size wrong estimation (local) 96774876 96776518 675291 673649 NC_000014.9 scf7180000172798 98.72 True local misassembly 96772685 96774635 677242 675292 NC_000014.9 scf7180000172798 99.85 True indel: indel (<= 5bp) 96769162 96772683 680764 677243 NC_000014.9 scf7180000172798 99.94 True local misassembly 96767769 96768678 682049 681140 NC_000014.9 scf7180000172798 99.67 True fake: scaffold gap size wrong estimation (local) 96758597 96764539 691000 685058 NC_000014.9 scf7180000172798 99.88 True fake: scaffold gap size wrong estimation (local) 96756634 96758325 692938 691247 NC_000014.9 scf7180000172798 99.7 True fake: scaffold gap size wrong estimation (local) 96749415 96756460 700114 693080 NC_000014.9 scf7180000172798 99.53 True fake: scaffold gap size wrong estimation (local) 96745025 96749234 704365 700296 NC_000014.9 scf7180000172798 96.37 True fake: scaffold gap size wrong estimation (local) 96717806 96745234 732101 704683 NC_000014.9 scf7180000172798 99.07 True fake: scaffold gap size wrong estimation (local) 96706738 96717608 742858 732247 NC_000014.9 scf7180000172798 96.8 True fake: scaffold gap size wrong estimation (local) 96700784 96706450 748774 743109 NC_000014.9 scf7180000172798 99.89 True relocation, inconsistency = 52067156 44625442 44633627 748775 756944 NC_000014.9 scf7180000172798 99.77 True fake: scaffold gap size wrong estimation (local) 44634119 44641801 757383 765054 NC_000014.9 scf7180000172798 99.69 True fake: scaffold gap size wrong estimation (local) 44645250 44668102 772583 795285 NC_000014.9 scf7180000172798 98.96 True relocation, scaffold gap is present, inconsistency = -24099393 20568778 20569799 795354 796375 NC_000014.9 scf7180000172798 99.32 True fake: scaffold gap size wrong estimation (local) 20570996 20573198 797369 799571 NC_000014.9 scf7180000172798 99.68 True fake: scaffold gap size wrong estimation (local) 20574413 20575909 800095 801591 NC_000014.9 scf7180000172798 100.0 True relocation, scaffold gap is present, inconsistency = 24093759 44669826 44670578 801749 802501 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 44671279 44671960 802989 803668 NC_000014.9 scf7180000172798 99.71 True fake: scaffold gap size wrong estimation (local) 44672328 44674628 804020 806320 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 44676845 44677423 808296 808874 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 44677792 44681780 809192 813180 NC_000014.9 scf7180000172798 99.97 True fake: scaffold gap size wrong estimation (local) 44681971 44682992 813375 814373 NC_000014.9 scf7180000172798 97.7 True fake: scaffold gap size wrong estimation (local) 44685041 44686236 816192 817387 NC_000014.9 scf7180000172798 99.33 True fake: scaffold gap size wrong estimation (local) 44686674 44693768 818275 825327 NC_000014.9 scf7180000172798 99.05 True fake: scaffold gap size wrong estimation (local) 44695042 44695683 826947 827587 NC_000014.9 scf7180000172798 99.38 True fake: scaffold gap size wrong estimation (local) 44698081 44705063 829281 836345 NC_000014.9 scf7180000172798 98.99 True fake: scaffold gap size wrong estimation (local) 44711345 44731775 844688 865053 NC_000014.9 scf7180000172798 99.33 True fake: scaffold gap size wrong estimation (local) 44731875 44735027 865146 868299 NC_000014.9 scf7180000172798 99.75 True fake: scaffold gap size wrong estimation (local) 44735269 44737042 868463 870236 NC_000014.9 scf7180000172798 100.0 True fake: scaffold gap size wrong estimation (local) 44737198 44742388 870395 875609 NC_000014.9 scf7180000172798 99.77 True fake: scaffold gap size wrong estimation (local) 44742501 44745669 876261 879340 NC_000014.9 scf7180000172798 97.05 True CONTIG scf7180000172798 880130 misassembled 50465981 50473731 1 7775 NC_000014.9 scf7180000172799 99.81 True fake: scaffold gap size wrong estimation (local) 50473934 50482485 7942 16486 NC_000014.9 scf7180000172799 99.61 True fake: scaffold gap size wrong estimation (local) 50482688 50483876 16704 17892 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50484060 50489249 18129 23400 NC_000014.9 scf7180000172799 97.41 True fake: scaffold gap size wrong estimation (local) 50490075 50491337 24183 25443 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 50491497 50493798 25605 27963 NC_000014.9 scf7180000172799 99.56 True fake: scaffold gap size wrong estimation (local) 50494385 50507307 28455 41898 NC_000014.9 scf7180000172799 96.26 True fake: scaffold gap size wrong estimation (local) 50509127 50514908 43717 49496 NC_000014.9 scf7180000172799 99.69 True fake: scaffold gap size wrong estimation (local) 50515168 50517171 49717 51720 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50517406 50520157 51872 54683 NC_000014.9 scf7180000172799 99.67 True fake: scaffold gap size wrong estimation (local) 50521048 50523055 55521 57528 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50523294 50541904 57794 76396 NC_000014.9 scf7180000172799 98.82 True fake: scaffold gap size wrong estimation (local) 50542037 50548549 76529 83063 NC_000014.9 scf7180000172799 99.95 True fake: scaffold gap size wrong estimation (local) 50548754 50555275 83227 89854 NC_000014.9 scf7180000172799 98.84 True fake: scaffold gap size wrong estimation (local) 50555543 50562097 90087 96616 NC_000014.9 scf7180000172799 99.57 True fake: scaffold gap size wrong estimation (local) 50562279 50564568 96871 99160 NC_000014.9 scf7180000172799 98.95 True fake: scaffold gap size wrong estimation (local) 50565411 50566041 100061 100693 NC_000014.9 scf7180000172799 98.89 True fake: scaffold gap size wrong estimation (local) 50566253 50567303 100863 101913 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50567304 50569264 102126 104086 NC_000014.9 scf7180000172799 99.95 True fake: scaffold gap size wrong estimation (local) 50569408 50582035 104199 116783 NC_000014.9 scf7180000172799 99.6 True fake: scaffold gap size wrong estimation (local) 50582679 50584446 117394 119161 NC_000014.9 scf7180000172799 99.89 True fake: scaffold gap size wrong estimation (local) 50584743 50592131 119454 126797 NC_000014.9 scf7180000172799 99.16 True fake: scaffold gap size wrong estimation (local) 50595017 50597004 129514 131499 NC_000014.9 scf7180000172799 99.8 True fake: scaffold gap size wrong estimation (local) 50597222 50597728 131656 132162 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50598636 50619112 133097 153567 NC_000014.9 scf7180000172799 99.79 True fake: scaffold gap size wrong estimation (local) 50620225 50622305 154585 156665 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50622645 50624825 157085 159303 NC_000014.9 scf7180000172799 99.31 True fake: scaffold gap size wrong estimation (local) 50625900 50628787 160221 163108 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50629582 50642401 163845 176568 NC_000014.9 scf7180000172799 99.04 True fake: scaffold gap size wrong estimation (local) 50642499 50648523 176982 182875 NC_000014.9 scf7180000172799 97.62 True fake: scaffold gap size wrong estimation (local) 50648745 50655442 183153 189774 NC_000014.9 scf7180000172799 98.11 True fake: scaffold gap size wrong estimation (local) 50656718 50662181 190972 196448 NC_000014.9 scf7180000172799 99.78 True fake: scaffold gap size wrong estimation (local) 50662442 50671585 196660 205795 NC_000014.9 scf7180000172799 99.73 True fake: scaffold gap size wrong estimation (local) 50671812 50672474 205900 206577 NC_000014.9 scf7180000172799 99.85 True fake: scaffold gap size wrong estimation (local) 50673203 50682734 207365 216893 NC_000014.9 scf7180000172799 99.3 True fake: scaffold gap size wrong estimation (local) 50682841 50684055 217093 218280 NC_000014.9 scf7180000172799 97.57 True fake: scaffold gap size wrong estimation (local) 50684146 50685109 218503 219466 NC_000014.9 scf7180000172799 99.69 True fake: scaffold gap size wrong estimation (local) 50685333 50686959 219644 221270 NC_000014.9 scf7180000172799 99.57 True indel: indel (> 5bp) 50687006 50689289 221271 223554 NC_000014.9 scf7180000172799 98.69 True fake: scaffold gap size wrong estimation (local) 50689290 50690834 223857 225401 NC_000014.9 scf7180000172799 99.94 True local misassembly 50690988 50691800 225402 226214 NC_000014.9 scf7180000172799 95.33 True indel: indel (<= 5bp) 50691804 50694834 226215 229245 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 50695006 50706336 229470 240824 NC_000014.9 scf7180000172799 99.41 True fake: scaffold gap size wrong estimation (local) 50706604 50708112 241077 242523 NC_000014.9 scf7180000172799 95.57 True fake: scaffold gap size wrong estimation (local) 50708229 50710589 242585 245091 NC_000014.9 scf7180000172799 99.62 True fake: scaffold gap size wrong estimation (local) 50710683 50712416 245199 246873 NC_000014.9 scf7180000172799 96.4 True fake: scaffold gap size wrong estimation (local) 50712824 50715504 247244 249922 NC_000014.9 scf7180000172799 99.7 True fake: scaffold gap size wrong estimation (local) 50715739 50716485 250108 250854 NC_000014.9 scf7180000172799 99.87 True local misassembly 50716656 50717162 250855 251361 NC_000014.9 scf7180000172799 96.06 True local misassembly 50717298 50717817 251362 251881 NC_000014.9 scf7180000172799 95.96 True fake: not a misassembly (possible transposable element) 76177710 76178492 251902 252684 NC_000014.9 scf7180000172799 99.4 True fake: not a misassembly (possible transposable element) 50717720 50734100 252685 268942 NC_000014.9 scf7180000172799 98.23 True fake: scaffold gap size wrong estimation (local) 50734345 50736169 269388 271190 NC_000014.9 scf7180000172799 98.73 True fake: scaffold gap size wrong estimation (local) 50736391 50737497 271341 272447 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50737795 50740212 272793 275224 NC_000014.9 scf7180000172799 99.83 True fake: scaffold gap size wrong estimation (local) 50740754 50742317 275745 277311 NC_000014.9 scf7180000172799 99.74 True fake: scaffold gap size wrong estimation (local) 50742659 50748451 277494 283403 NC_000014.9 scf7180000172799 99.88 True fake: scaffold gap size wrong estimation (local) 50749203 50759510 284069 294313 NC_000014.9 scf7180000172799 99.07 True fake: scaffold gap size wrong estimation (local) 50759764 50767592 294462 302253 NC_000014.9 scf7180000172799 98.96 True fake: scaffold gap size wrong estimation (local) 50768048 50779511 302674 314066 NC_000014.9 scf7180000172799 99.3 True fake: scaffold gap size wrong estimation (local) 50779759 50789588 314328 324111 NC_000014.9 scf7180000172799 99.34 True fake: scaffold gap size wrong estimation (local) 50790112 50799824 324726 334439 NC_000014.9 scf7180000172799 99.19 True indel: indel (<= 5bp) 50799908 50801098 334524 335701 NC_000014.9 scf7180000172799 98.78 True fake: scaffold gap size wrong estimation (local) 50801314 50803158 335856 337700 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 50803344 50810754 337902 345199 NC_000014.9 scf7180000172799 97.13 True fake: scaffold gap size wrong estimation (local) 50811938 50814807 346429 349296 NC_000014.9 scf7180000172799 99.72 True indel: stretch of mismatches 50814950 50815683 349439 350172 NC_000014.9 scf7180000172799 99.73 True fake: scaffold gap size wrong estimation (local) 50815896 50818069 350287 352460 NC_000014.9 scf7180000172799 99.91 True fake: scaffold gap size wrong estimation (local) 50818331 50827688 352669 362032 NC_000014.9 scf7180000172799 99.94 True fake: scaffold gap size wrong estimation (local) 50827772 50841524 362107 375867 NC_000014.9 scf7180000172799 99.79 True fake: scaffold gap size wrong estimation (local) 50842285 50844723 376640 378972 NC_000014.9 scf7180000172799 95.46 True fake: scaffold gap size wrong estimation (local) 50844904 50846958 379200 381254 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50847329 50849412 381626 383707 NC_000014.9 scf7180000172799 99.9 True fake: scaffold gap size wrong estimation (local) 50849880 50852041 384226 386387 NC_000014.9 scf7180000172799 99.95 True fake: scaffold gap size wrong estimation (local) 50853903 50855059 388117 389273 NC_000014.9 scf7180000172799 99.91 True fake: scaffold gap size wrong estimation (local) 50855182 50863458 389797 397848 NC_000014.9 scf7180000172799 96.68 True fake: scaffold gap size wrong estimation (local) 50863703 50874416 397874 408702 NC_000014.9 scf7180000172799 98.59 True fake: scaffold gap size wrong estimation (local) 50874584 50877664 408879 411959 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 50877867 50881575 412142 415850 NC_000014.9 scf7180000172799 99.81 True fake: scaffold gap size wrong estimation (local) 50881576 50882079 415902 416405 NC_000014.9 scf7180000172799 99.6 True fake: scaffold gap size wrong estimation (local) 50882979 50883951 416829 417801 NC_000014.9 scf7180000172799 99.79 True indel: indel (<= 5bp) 50884036 50884704 417885 418553 NC_000014.9 scf7180000172799 98.95 True relocation, scaffold gap is present, inconsistency = 29627757 21253969 21256248 420770 418584 NC_000014.9 scf7180000172799 95.0 True fake: scaffold gap size wrong estimation (local) 21251672 21252989 422304 420987 NC_000014.9 scf7180000172799 99.63 True relocation, inconsistency = 29631751 50884741 50886212 422305 423776 NC_000014.9 scf7180000172799 99.73 True relocation, inconsistency = -16296612 34589601 34590180 423777 424356 NC_000014.9 scf7180000172799 99.83 True fake: scaffold gap size wrong estimation (local) 34590653 34591230 425113 425690 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 34591848 34593451 426315 427918 NC_000014.9 scf7180000172799 99.81 True fake: scaffold gap size wrong estimation (local) 34593760 34595962 428221 430380 NC_000014.9 scf7180000172799 97.85 True fake: scaffold gap size wrong estimation (local) 34596577 34601231 430984 435641 NC_000014.9 scf7180000172799 96.41 True fake: scaffold gap size wrong estimation (local) 34603265 34605933 437555 440225 NC_000014.9 scf7180000172799 99.74 True fake: scaffold gap size wrong estimation (local) 34607005 34607700 441332 442027 NC_000014.9 scf7180000172799 96.55 True local misassembly 34607821 34608884 442028 443091 NC_000014.9 scf7180000172799 98.12 True fake: scaffold gap size wrong estimation (local) 34609497 34611557 443901 445968 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 34612018 34612572 446727 447281 NC_000014.9 scf7180000172799 99.82 True local misassembly 34613029 34613612 447282 447865 NC_000014.9 scf7180000172799 96.58 True relocation, scaffold gap is present, inconsistency = 16283029 50897301 50907819 448525 459022 NC_000014.9 scf7180000172799 99.69 True fake: scaffold gap size wrong estimation (local) 50908041 50912712 459169 463840 NC_000014.9 scf7180000172799 99.91 True fake: scaffold gap size wrong estimation (local) 50913588 50926315 464674 477520 NC_000014.9 scf7180000172799 95.13 True fake: scaffold gap size wrong estimation (local) 50926750 50936592 477818 487764 NC_000014.9 scf7180000172799 98.38 True fake: scaffold gap size wrong estimation (local) 50936717 50938317 487930 489530 NC_000014.9 scf7180000172799 99.94 True fake: scaffold gap size wrong estimation (local) 50938494 50939102 489585 490193 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50939298 50941627 490446 492775 NC_000014.9 scf7180000172799 100.0 True fake: scaffold gap size wrong estimation (local) 50941774 50945541 492895 496662 NC_000014.9 scf7180000172799 99.97 True fake: scaffold gap size wrong estimation (local) 50946284 50949471 497475 500543 NC_000014.9 scf7180000172799 96.06 True fake: scaffold gap size wrong estimation (local) 50950842 50951400 501895 502453 NC_000014.9 scf7180000172799 99.82 True fake: scaffold gap size wrong estimation (local) 50951607 50953398 502574 504365 NC_000014.9 scf7180000172799 99.89 True fake: scaffold gap size wrong estimation (local) 50953499 50956179 504461 507141 NC_000014.9 scf7180000172799 99.96 True fake: scaffold gap size wrong estimation (local) 50957003 50957764 507870 508612 NC_000014.9 scf7180000172799 96.46 True fake: scaffold gap size wrong estimation (local) 50957912 50959643 508772 510503 NC_000014.9 scf7180000172799 99.71 True indel: indel (<= 5bp) 50959644 50960415 510505 511276 NC_000014.9 scf7180000172799 99.87 True fake: scaffold gap size wrong estimation (local) 50961266 50966830 512074 517672 NC_000014.9 scf7180000172799 99.37 True fake: scaffold gap size wrong estimation (local) 50967428 50968320 518389 519281 NC_000014.9 scf7180000172799 99.89 True local misassembly 50968433 50968983 519282 519832 NC_000014.9 scf7180000172799 96.01 True fake: scaffold gap size wrong estimation (local) 50969554 50971875 520490 522811 NC_000014.9 scf7180000172799 99.87 True fake: scaffold gap size wrong estimation (local) 50972150 50974790 523016 525656 NC_000014.9 scf7180000172799 99.96 True fake: scaffold gap size wrong estimation (local) 50975013 50993384 525813 544174 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 50993556 51001253 544336 552034 NC_000014.9 scf7180000172799 99.84 True fake: scaffold gap size wrong estimation (local) 51001504 51002163 552373 553032 NC_000014.9 scf7180000172799 99.85 True fake: scaffold gap size wrong estimation (local) 51002362 51016418 553143 567181 NC_000014.9 scf7180000172799 99.69 True relocation, inconsistency = 35514299 86530718 86531983 567182 568447 NC_000014.9 scf7180000172799 100.0 True CONTIG scf7180000172799 568447 misassembled 35829112 35830146 1 1035 NC_000014.9 scf7180000172800 99.9 True fake: scaffold gap size wrong estimation (local) 35830313 35836801 1260 7672 NC_000014.9 scf7180000172800 98.31 True fake: scaffold gap size wrong estimation (local) 35837200 35837944 8042 8786 NC_000014.9 scf7180000172800 96.91 True fake: scaffold gap size wrong estimation (local) 35841510 35842016 13243 13749 NC_000014.9 scf7180000172800 96.06 True fake: scaffold gap size wrong estimation (local) 35842551 35843414 14273 15135 NC_000014.9 scf7180000172800 99.65 True fake: scaffold gap size wrong estimation (local) 35843853 35849153 15294 20594 NC_000014.9 scf7180000172800 99.92 True fake: scaffold gap size wrong estimation (local) 35849291 35849975 21067 21751 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35850375 35852672 22246 24543 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35852902 35856996 24780 28886 NC_000014.9 scf7180000172800 99.93 True fake: scaffold gap size wrong estimation (local) 35857253 35872259 29113 44131 NC_000014.9 scf7180000172800 99.47 True fake: scaffold gap size wrong estimation (local) 35872438 35873574 44248 45344 NC_000014.9 scf7180000172800 96.15 True fake: scaffold gap size wrong estimation (local) 35874768 35877715 46585 49533 NC_000014.9 scf7180000172800 99.97 True fake: scaffold gap size wrong estimation (local) 35877836 35883329 49643 55135 NC_000014.9 scf7180000172800 99.98 True fake: scaffold gap size wrong estimation (local) 35883416 35884860 55198 56642 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35885195 35887977 56903 59685 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35888243 35891049 59869 62688 NC_000014.9 scf7180000172800 99.96 True fake: scaffold gap size wrong estimation (local) 35891398 35900266 62821 71917 NC_000014.9 scf7180000172800 97.58 True fake: scaffold gap size wrong estimation (local) 35900444 35905832 72037 77421 NC_000014.9 scf7180000172800 99.53 True fake: scaffold gap size wrong estimation (local) 35906131 35908817 77690 80416 NC_000014.9 scf7180000172800 99.81 True fake: scaffold gap size wrong estimation (local) 35909424 35922484 81046 94637 NC_000014.9 scf7180000172800 95.81 True fake: scaffold gap size wrong estimation (local) 35922859 35924816 95082 97052 NC_000014.9 scf7180000172800 98.84 True fake: scaffold gap size wrong estimation (local) 35925052 35930412 97390 102610 NC_000014.9 scf7180000172800 97.15 True fake: not a misassembly (possible transposable element) 53809902 53811478 102631 104207 NC_000014.9 scf7180000172800 100.0 True fake: not a misassembly (possible transposable element) 35929119 35936510 104208 111428 NC_000014.9 scf7180000172800 97.48 True fake: scaffold gap size wrong estimation (local) 35936866 35947617 111688 122305 NC_000014.9 scf7180000172800 98.53 True fake: scaffold gap size wrong estimation (local) 35947634 35948235 122702 123303 NC_000014.9 scf7180000172800 100.0 True local misassembly 35949667 35951391 123304 125028 NC_000014.9 scf7180000172800 99.71 True fake: scaffold gap size wrong estimation (local) 35951582 35955369 125244 129057 NC_000014.9 scf7180000172800 99.74 True fake: scaffold gap size wrong estimation (local) 35955539 35960649 129230 134340 NC_000014.9 scf7180000172800 99.96 True fake: scaffold gap size wrong estimation (local) 35960863 35973002 134877 146861 NC_000014.9 scf7180000172800 98.1 True fake: scaffold gap size wrong estimation (local) 35973668 35976151 147582 150075 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35978664 35980715 152260 154317 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35982438 35983823 155765 157150 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35984037 35988164 157340 161467 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 35988339 36008425 161590 181712 NC_000014.9 scf7180000172800 99.7 True fake: scaffold gap size wrong estimation (local) 36008556 36025908 181822 199383 NC_000014.9 scf7180000172800 98.86 True fake: scaffold gap size wrong estimation (local) 36026218 36028479 199718 201944 NC_000014.9 scf7180000172800 98.37 True fake: scaffold gap size wrong estimation (local) 36037606 36039964 212006 214364 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 36040570 36077774 214671 252211 NC_000014.9 scf7180000172800 98.05 True fake: scaffold gap size wrong estimation (local) 36078020 36080248 252415 254633 NC_000014.9 scf7180000172800 99.19 True fake: scaffold gap size wrong estimation (local) 36080519 36082202 254849 256546 NC_000014.9 scf7180000172800 99.52 True fake: scaffold gap size wrong estimation (local) 36082775 36090006 256951 264096 NC_000014.9 scf7180000172800 98.51 True fake: scaffold gap size wrong estimation (local) 36090082 36098296 264272 272415 NC_000014.9 scf7180000172800 98.57 True fake: scaffold gap size wrong estimation (local) 36098431 36119569 272529 293588 NC_000014.9 scf7180000172800 98.95 True fake: scaffold gap size wrong estimation (local) 36123709 36130317 298873 305481 NC_000014.9 scf7180000172800 99.67 True fake: scaffold gap size wrong estimation (local) 36130533 36138938 305571 314019 NC_000014.9 scf7180000172800 99.05 True fake: scaffold gap size wrong estimation (local) 36139128 36142985 314164 318184 NC_000014.9 scf7180000172800 97.85 True fake: scaffold gap size wrong estimation (local) 36148612 36156666 325487 333445 NC_000014.9 scf7180000172800 98.49 True fake: scaffold gap size wrong estimation (local) 36157428 36159159 334056 335813 NC_000014.9 scf7180000172800 98.96 True fake: scaffold gap size wrong estimation (local) 36160728 36180936 337272 357456 NC_000014.9 scf7180000172800 99.69 True fake: scaffold gap size wrong estimation (local) 36180961 36182682 357559 359238 NC_000014.9 scf7180000172800 96.26 True fake: scaffold gap size wrong estimation (local) 36182885 36184974 359450 361539 NC_000014.9 scf7180000172800 99.67 True fake: scaffold gap size wrong estimation (local) 36190676 36232082 367878 409704 NC_000014.9 scf7180000172800 99.14 True indel: indel (<= 5bp) 36232289 36237090 409910 414725 NC_000014.9 scf7180000172800 99.58 True fake: scaffold gap size wrong estimation (local) 36237273 36242111 414841 419679 NC_000014.9 scf7180000172800 99.88 True fake: not a misassembly (possible transposable element) 57520688 57521218 420233 419703 NC_000014.9 scf7180000172800 100.0 True fake: not a misassembly (possible transposable element) 36242201 36244937 420285 423021 NC_000014.9 scf7180000172800 99.53 True fake: not a misassembly (possible transposable element) 57518190 57518714 423566 423042 NC_000014.9 scf7180000172800 100.0 True fake: not a misassembly (possible transposable element) 36245136 36246491 423588 424939 NC_000014.9 scf7180000172800 96.79 True relocation, scaffold gap is present, inconsistency = 21250818 57500400 57514229 441865 428030 NC_000014.9 scf7180000172800 99.67 True fake: scaffold gap size wrong estimation (local) 57488959 57499355 453492 442819 NC_000014.9 scf7180000172800 98.68 True fake: scaffold gap size wrong estimation (local) 57475814 57488711 466585 453678 NC_000014.9 scf7180000172800 99.89 True fake: scaffold gap size wrong estimation (local) 57463575 57475004 478707 467310 NC_000014.9 scf7180000172800 99.64 True fake: scaffold gap size wrong estimation (local) 57460956 57463383 481641 479213 NC_000014.9 scf7180000172800 99.71 True fake: scaffold gap size wrong estimation (local) 57454788 57460729 487633 481806 NC_000014.9 scf7180000172800 98.06 True fake: scaffold gap size wrong estimation (local) 57450283 57454485 492093 487891 NC_000014.9 scf7180000172800 99.98 True fake: not a misassembly (possible transposable element) 40553017 40553563 492094 492641 NC_000014.9 scf7180000172800 99.29 True fake: not a misassembly (possible transposable element) 57449504 57450307 493474 492671 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 57448984 57449503 494017 493498 NC_000014.9 scf7180000172800 97.12 True indel: indel (<= 5bp) 57448321 57448983 494685 494023 NC_000014.9 scf7180000172800 100.0 True indel: indel (<= 5bp) 57447630 57448319 495375 494686 NC_000014.9 scf7180000172800 99.28 True fake: scaffold gap size wrong estimation (local) 57446290 57447629 496731 495392 NC_000014.9 scf7180000172800 99.33 True fake: scaffold gap size wrong estimation (local) 57443521 57446289 499951 497183 NC_000014.9 scf7180000172800 99.93 True fake: not a misassembly (possible transposable element) 61847546 61848208 500634 499972 NC_000014.9 scf7180000172800 99.7 True fake: not a misassembly (possible transposable element) 57439202 57443361 504786 500662 NC_000014.9 scf7180000172800 99.11 True fake: scaffold gap size wrong estimation (local) 57436173 57438698 508010 505485 NC_000014.9 scf7180000172800 100.0 True fake: not a misassembly (possible transposable element) 45778446 45779320 508011 508885 NC_000014.9 scf7180000172800 100.0 True fake: not a misassembly (possible transposable element) 57434785 57435937 510058 508906 NC_000014.9 scf7180000172800 100.0 True relocation, inconsistency = 4819362 52614894 52615422 510587 510059 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52614124 52614893 511650 510881 NC_000014.9 scf7180000172800 100.0 True indel: indel (<= 5bp) 52613251 52614123 512524 511652 NC_000014.9 scf7180000172800 99.89 True fake: scaffold gap size wrong estimation (local) 52596808 52613032 529489 512723 NC_000014.9 scf7180000172800 96.77 True local misassembly 52595691 52596259 530897 530329 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52591467 52592011 534235 533691 NC_000014.9 scf7180000172800 98.53 True indel: indel (<= 5bp) 52588389 52590994 537317 534712 NC_000014.9 scf7180000172800 99.92 True fake: scaffold gap size wrong estimation (local) 52585754 52587749 539868 537873 NC_000014.9 scf7180000172800 99.9 True fake: scaffold gap size wrong estimation (local) 52581482 52585581 543973 539995 NC_000014.9 scf7180000172800 97.0 True fake: scaffold gap size wrong estimation (local) 52577892 52580803 547625 544626 NC_000014.9 scf7180000172800 97.98 True fake: scaffold gap size wrong estimation (local) 52574439 52577727 550994 547699 NC_000014.9 scf7180000172800 99.88 True fake: scaffold gap size wrong estimation (local) 52573322 52573983 552198 551525 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52570876 52571497 554596 553975 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52568136 52570740 557268 554664 NC_000014.9 scf7180000172800 99.69 True indel: indel (> 5bp) 52567077 52568042 558317 557351 NC_000014.9 scf7180000172800 99.58 True fake: scaffold gap size wrong estimation (local) 52564276 52566885 561172 558563 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52549862 52564025 575536 561338 NC_000014.9 scf7180000172800 99.94 True fake: scaffold gap size wrong estimation (local) 52548854 52549805 576723 575747 NC_000014.9 scf7180000172800 99.37 True fake: scaffold gap size wrong estimation (local) 52541246 52548625 584202 576823 NC_000014.9 scf7180000172800 99.99 True fake: scaffold gap size wrong estimation (local) 52532709 52540372 592693 585030 NC_000014.9 scf7180000172800 99.97 True fake: scaffold gap size wrong estimation (local) 52530649 52532553 594727 592823 NC_000014.9 scf7180000172800 99.63 True fake: scaffold gap size wrong estimation (local) 52525733 52528934 599889 596688 NC_000014.9 scf7180000172800 99.91 True fake: scaffold gap size wrong estimation (local) 52520544 52525566 604960 600113 NC_000014.9 scf7180000172800 96.46 True fake: scaffold gap size wrong estimation (local) 52509564 52520376 615878 605069 NC_000014.9 scf7180000172800 99.87 True fake: scaffold gap size wrong estimation (local) 52505310 52505815 621602 621097 NC_000014.9 scf7180000172800 99.8 True fake: scaffold gap size wrong estimation (local) 52503510 52504009 623289 622790 NC_000014.9 scf7180000172800 99.8 True fake: scaffold gap size wrong estimation (local) 52497889 52503020 628611 623486 NC_000014.9 scf7180000172800 99.73 True fake: scaffold gap size wrong estimation (local) 52496066 52497674 631398 629750 NC_000014.9 scf7180000172800 99.88 True fake: scaffold gap size wrong estimation (local) 52477950 52495915 655933 637941 NC_000014.9 scf7180000172800 98.74 True fake: scaffold gap size wrong estimation (local) 52469677 52476985 664103 656760 NC_000014.9 scf7180000172800 99.93 True fake: scaffold gap size wrong estimation (local) 52466847 52469543 666953 664238 NC_000014.9 scf7180000172800 99.81 True fake: scaffold gap size wrong estimation (local) 52465583 52466678 668288 667172 NC_000014.9 scf7180000172800 99.91 True fake: scaffold gap size wrong estimation (local) 52462574 52465416 671274 668432 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52460098 52462480 673773 671391 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52458421 52459684 676112 674849 NC_000014.9 scf7180000172800 98.34 True indel: indel (> 5bp) 52454744 52458375 679744 676113 NC_000014.9 scf7180000172800 99.97 True fake: scaffold gap size wrong estimation (local) 52430143 52454193 705124 680792 NC_000014.9 scf7180000172800 97.72 True fake: scaffold gap size wrong estimation (local) 52426887 52430000 708356 705234 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52425304 52426768 709932 708468 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52415825 52425165 719418 710032 NC_000014.9 scf7180000172800 99.6 True fake: scaffold gap size wrong estimation (local) 52414723 52415675 720585 719633 NC_000014.9 scf7180000172800 97.8 True local misassembly 52413898 52414598 721286 720586 NC_000014.9 scf7180000172800 99.86 True fake: scaffold gap size wrong estimation (local) 52411907 52413897 723592 721602 NC_000014.9 scf7180000172800 99.9 True fake: scaffold gap size wrong estimation (local) 52399044 52411546 736540 723823 NC_000014.9 scf7180000172800 98.38 True fake: scaffold gap size wrong estimation (local) 52390159 52398813 745226 736680 NC_000014.9 scf7180000172800 98.58 True fake: scaffold gap size wrong estimation (local) 52373331 52383996 763154 752472 NC_000014.9 scf7180000172800 99.86 True indel: indel (<= 5bp) 52342371 52373240 794168 763244 NC_000014.9 scf7180000172800 98.87 True fake: scaffold gap size wrong estimation (local) 52337750 52342213 798651 794273 NC_000014.9 scf7180000172800 97.71 True fake: scaffold gap size wrong estimation (local) 52332950 52337614 803509 798786 NC_000014.9 scf7180000172800 99.42 True fake: scaffold gap size wrong estimation (local) 52331519 52332768 804937 803688 NC_000014.9 scf7180000172800 99.76 True fake: scaffold gap size wrong estimation (local) 52325268 52331244 811147 805169 NC_000014.9 scf7180000172800 99.77 True fake: scaffold gap size wrong estimation (local) 52322959 52324876 813428 811495 NC_000014.9 scf7180000172800 99.43 True fake: scaffold gap size wrong estimation (local) 52305874 52322699 830457 813636 NC_000014.9 scf7180000172800 99.85 True fake: scaffold gap size wrong estimation (local) 52299328 52305631 837175 830606 NC_000014.9 scf7180000172800 96.31 True fake: scaffold gap size wrong estimation (local) 52290387 52299094 845940 837277 NC_000014.9 scf7180000172800 99.22 True fake: scaffold gap size wrong estimation (local) 52287961 52290125 848401 846237 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52273287 52287669 863090 848503 NC_000014.9 scf7180000172800 95.3 True fake: scaffold gap size wrong estimation (local) 52262189 52273115 874170 863280 NC_000014.9 scf7180000172800 99.26 True fake: scaffold gap size wrong estimation (local) 52258129 52261659 878171 874708 NC_000014.9 scf7180000172800 97.86 True fake: scaffold gap size wrong estimation (local) 52254961 52255489 880776 880248 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 52252885 52254327 882724 881282 NC_000014.9 scf7180000172800 99.86 True fake: scaffold gap size wrong estimation (local) 52251113 52252763 884495 882845 NC_000014.9 scf7180000172800 99.94 True indel: indel (<= 5bp) 52248863 52251112 886746 884497 NC_000014.9 scf7180000172800 97.78 True indel: indel (> 5bp) 52246151 52248823 889419 886747 NC_000014.9 scf7180000172800 99.63 True fake: scaffold gap size wrong estimation (local) 52244319 52245454 891470 890335 NC_000014.9 scf7180000172800 99.82 True fake: not a misassembly (possible transposable element) 26605760 26607032 891888 893160 NC_000014.9 scf7180000172800 99.84 True fake: not a misassembly (possible transposable element) 52239761 52243760 897184 893183 NC_000014.9 scf7180000172800 99.75 True fake: scaffold gap size wrong estimation (local) 52227567 52239543 909258 897393 NC_000014.9 scf7180000172800 98.93 True fake: scaffold gap size wrong estimation (local) 52218707 52226006 917961 910751 NC_000014.9 scf7180000172800 96.89 True fake: scaffold gap size wrong estimation (local) 52214123 52218677 922732 918189 NC_000014.9 scf7180000172800 99.34 True relocation, inconsistency = 12913463 39299456 39300659 923936 922733 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39296983 39298415 926609 925195 NC_000014.9 scf7180000172800 98.67 True fake: scaffold gap size wrong estimation (local) 39288484 39296532 934967 926926 NC_000014.9 scf7180000172800 98.0 True fake: scaffold gap size wrong estimation (local) 39287866 39288376 935560 935050 NC_000014.9 scf7180000172800 95.3 True local misassembly 39286868 39287715 936408 935561 NC_000014.9 scf7180000172800 99.88 True fake: scaffold gap size wrong estimation (local) 39281875 39284513 941419 938781 NC_000014.9 scf7180000172800 99.24 True fake: scaffold gap size wrong estimation (local) 39279151 39280045 944128 943234 NC_000014.9 scf7180000172800 97.54 True local misassembly 39277811 39278954 945272 944129 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39275142 39277577 947907 945508 NC_000014.9 scf7180000172800 98.43 True fake: scaffold gap size wrong estimation (local) 39263294 39274441 959962 948616 NC_000014.9 scf7180000172800 96.87 True fake: scaffold gap size wrong estimation (local) 39250720 39259616 974668 965656 NC_000014.9 scf7180000172800 98.57 True fake: scaffold gap size wrong estimation (local) 39243787 39250474 981441 974862 NC_000014.9 scf7180000172800 97.95 True fake: scaffold gap size wrong estimation (local) 39243125 39243786 983299 982638 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39237950 39242327 987850 983434 NC_000014.9 scf7180000172800 99.27 True fake: scaffold gap size wrong estimation (local) 39235166 39237853 990643 987956 NC_000014.9 scf7180000172800 99.89 True fake: scaffold gap size wrong estimation (local) 39232694 39235069 993141 990766 NC_000014.9 scf7180000172800 99.83 True fake: scaffold gap size wrong estimation (local) 39227890 39232192 998061 993684 NC_000014.9 scf7180000172800 99.93 True fake: scaffold gap size wrong estimation (local) 39227227 39227729 998918 998416 NC_000014.9 scf7180000172800 95.43 True local misassembly 39226448 39227059 999530 998919 NC_000014.9 scf7180000172800 96.41 True fake: scaffold gap size wrong estimation (local) 39223615 39225519 1002397 1000433 NC_000014.9 scf7180000172800 99.05 True fake: scaffold gap size wrong estimation (local) 39222390 39223421 1003578 1002547 NC_000014.9 scf7180000172800 99.81 True fake: scaffold gap size wrong estimation (local) 39221047 39221926 1004893 1004014 NC_000014.9 scf7180000172800 99.55 True fake: scaffold gap size wrong estimation (local) 39220522 39221046 1005446 1004922 NC_000014.9 scf7180000172800 97.9 True indel: indel (> 5bp) 39219811 39220521 1006166 1005456 NC_000014.9 scf7180000172800 99.58 True fake: scaffold gap size wrong estimation (local) 39218996 39219596 1006848 1006248 NC_000014.9 scf7180000172800 99.67 True fake: scaffold gap size wrong estimation (local) 39218242 39218851 1007540 1006931 NC_000014.9 scf7180000172800 99.67 True fake: scaffold gap size wrong estimation (local) 39214549 39218241 1011727 1008035 NC_000014.9 scf7180000172800 99.3 True fake: scaffold gap size wrong estimation (local) 39209694 39213865 1016792 1012387 NC_000014.9 scf7180000172800 95.98 True fake: scaffold gap size wrong estimation (local) 39207010 39209498 1019314 1016826 NC_000014.9 scf7180000172800 99.92 True fake: scaffold gap size wrong estimation (local) 39204538 39205652 1021567 1020481 NC_000014.9 scf7180000172800 96.89 True fake: scaffold gap size wrong estimation (local) 39203227 39204172 1022993 1022048 NC_000014.9 scf7180000172800 96.83 True local misassembly 39201645 39203090 1024439 1022994 NC_000014.9 scf7180000172800 99.93 True fake: scaffold gap size wrong estimation (local) 39199965 39200918 1026251 1025298 NC_000014.9 scf7180000172800 97.8 True fake: scaffold gap size wrong estimation (local) 39196566 39197610 1029583 1028539 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39195832 39196406 1030621 1030047 NC_000014.9 scf7180000172800 100.0 True local misassembly 39194816 39195675 1031481 1030622 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39189741 39193647 1036314 1032475 NC_000014.9 scf7180000172800 95.03 True fake: scaffold gap size wrong estimation (local) 39186421 39189662 1039662 1036501 NC_000014.9 scf7180000172800 97.29 True fake: scaffold gap size wrong estimation (local) 39184530 39186314 1041553 1039771 NC_000014.9 scf7180000172800 99.77 True fake: scaffold gap size wrong estimation (local) 39183677 39184273 1042376 1041780 NC_000014.9 scf7180000172800 96.31 True indel: indel (<= 5bp) 39179903 39183673 1046147 1042377 NC_000014.9 scf7180000172800 99.97 True fake: scaffold gap size wrong estimation (local) 39178727 39179657 1047210 1046280 NC_000014.9 scf7180000172800 95.7 True fake: scaffold gap size wrong estimation (local) 39172839 39178273 1053191 1047729 NC_000014.9 scf7180000172800 99.25 True fake: scaffold gap size wrong estimation (local) 39170845 39172632 1055190 1053390 NC_000014.9 scf7180000172800 99.31 True fake: scaffold gap size wrong estimation (local) 39166003 39170720 1060031 1055294 NC_000014.9 scf7180000172800 99.87 True fake: scaffold gap size wrong estimation (local) 39165289 39165899 1060734 1060124 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 39155803 39165063 1070173 1060928 NC_000014.9 scf7180000172800 99.29 True fake: scaffold gap size wrong estimation (local) 39153211 39155148 1072760 1070790 NC_000014.9 scf7180000172800 99.64 True fake: scaffold gap size wrong estimation (local) 39147536 39153056 1078330 1072874 NC_000014.9 scf7180000172800 98.61 True fake: scaffold gap size wrong estimation (local) 39143984 39144620 1081799 1081163 NC_000014.9 scf7180000172800 99.69 True relocation, scaffold gap is present, inconsistency = -18382615 57525789 57526523 1082609 1081875 NC_000014.9 scf7180000172800 100.0 True fake: scaffold gap size wrong estimation (local) 57521581 57525265 1086847 1082978 NC_000014.9 scf7180000172800 98.89 True fake: scaffold gap size wrong estimation (local) 57520006 57520782 1088166 1087390 NC_000014.9 scf7180000172800 100.0 True CONTIG scf7180000172800 1089143 misassembled 78055140 78056799 1678 19 NC_000014.9 scf7180000172801 99.64 True fake: scaffold gap size wrong estimation (local) 78052210 78054195 4569 2551 NC_000014.9 scf7180000172801 98.85 True relocation, scaffold gap is present, inconsistency = 47646094 30391579 30404712 19046 5973 NC_000014.9 scf7180000172801 99.45 True fake: scaffold gap size wrong estimation (local) 30387230 30391486 23399 19143 NC_000014.9 scf7180000172801 99.98 True fake: scaffold gap size wrong estimation (local) 30369334 30387048 41218 23500 NC_000014.9 scf7180000172801 99.92 True fake: scaffold gap size wrong estimation (local) 30353086 30363628 59149 48589 NC_000014.9 scf7180000172801 99.8 True fake: scaffold gap size wrong estimation (local) 30340389 30352899 71792 59258 NC_000014.9 scf7180000172801 99.98 True fake: scaffold gap size wrong estimation (local) 30308283 30340219 103984 71984 NC_000014.9 scf7180000172801 99.05 True fake: scaffold gap size wrong estimation (local) 30295552 30308137 116727 104070 NC_000014.9 scf7180000172801 98.8 True fake: scaffold gap size wrong estimation (local) 30283574 30295295 128645 116924 NC_000014.9 scf7180000172801 99.98 True fake: scaffold gap size wrong estimation (local) 30208403 30283291 203954 128928 NC_000014.9 scf7180000172801 99.59 True fake: scaffold gap size wrong estimation (local) 30206389 30208271 205914 204032 NC_000014.9 scf7180000172801 99.89 True fake: scaffold gap size wrong estimation (local) 30203394 30206216 208933 206089 NC_000014.9 scf7180000172801 99.89 True fake: scaffold gap size wrong estimation (local) 30199031 30203005 213317 209337 NC_000014.9 scf7180000172801 99.9 True fake: scaffold gap size wrong estimation (local) 30175486 30198909 236874 213450 NC_000014.9 scf7180000172801 99.75 True fake: scaffold gap size wrong estimation (local) 30170008 30173504 242056 238556 NC_000014.9 scf7180000172801 99.77 True fake: scaffold gap size wrong estimation (local) 30143367 30169709 268920 242285 NC_000014.9 scf7180000172801 98.55 True fake: scaffold gap size wrong estimation (local) 30137002 30143108 275148 269103 NC_000014.9 scf7180000172801 98.83 True fake: scaffold gap size wrong estimation (local) 30128772 30136821 283320 275281 NC_000014.9 scf7180000172801 99.61 True fake: scaffold gap size wrong estimation (local) 30118152 30128592 293816 283477 NC_000014.9 scf7180000172801 98.9 True fake: scaffold gap size wrong estimation (local) 30113858 30117980 298044 293922 NC_000014.9 scf7180000172801 99.83 True fake: scaffold gap size wrong estimation (local) 30107942 30113156 304077 299085 NC_000014.9 scf7180000172801 95.57 True fake: scaffold gap size wrong estimation (local) 30103085 30107383 309070 304776 NC_000014.9 scf7180000172801 99.65 True fake: scaffold gap size wrong estimation (local) 30099918 30100526 313494 312745 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 30099002 30099691 314288 313599 NC_000014.9 scf7180000172801 99.71 True fake: scaffold gap size wrong estimation (local) 30089497 30098933 324298 314421 NC_000014.9 scf7180000172801 95.46 True local misassembly 30080269 30089398 333625 324299 NC_000014.9 scf7180000172801 97.96 True fake: scaffold gap size wrong estimation (local) 30073850 30079987 340129 333838 NC_000014.9 scf7180000172801 97.7 True fake: scaffold gap size wrong estimation (local) 30067994 30073562 345957 340389 NC_000014.9 scf7180000172801 99.91 True fake: scaffold gap size wrong estimation (local) 30066654 30067845 347304 346113 NC_000014.9 scf7180000172801 99.66 True fake: scaffold gap size wrong estimation (local) 30066040 30066653 348069 347456 NC_000014.9 scf7180000172801 97.72 True fake: scaffold gap size wrong estimation (local) 30051067 30065083 362889 348876 NC_000014.9 scf7180000172801 99.91 True fake: scaffold gap size wrong estimation (local) 30049857 30050524 364045 363378 NC_000014.9 scf7180000172801 100.0 True indel: indel (<= 5bp) 30048728 30049616 365175 364287 NC_000014.9 scf7180000172801 98.54 True indel: indel (<= 5bp) 30047229 30048572 366673 365330 NC_000014.9 scf7180000172801 98.21 True fake: scaffold gap size wrong estimation (local) 30044416 30046901 369458 366973 NC_000014.9 scf7180000172801 99.68 True fake: scaffold gap size wrong estimation (local) 30008264 30044057 405621 369788 NC_000014.9 scf7180000172801 99.8 True fake: scaffold gap size wrong estimation (local) 29977109 30007986 436741 405817 NC_000014.9 scf7180000172801 98.48 True fake: not a misassembly (possible transposable element) 19392673 19393730 437817 436762 NC_000014.9 scf7180000172801 97.64 True fake: not a misassembly (possible transposable element) 29975724 29976556 438912 438080 NC_000014.9 scf7180000172801 97.12 True fake: not a misassembly (possible transposable element) 19383964 19385337 441455 440075 NC_000014.9 scf7180000172801 97.83 True fake: not a misassembly (possible transposable element) 29970806 29974617 445534 441756 NC_000014.9 scf7180000172801 98.63 True fake: scaffold gap size wrong estimation (local) 29966051 29970582 450264 445739 NC_000014.9 scf7180000172801 99.82 True fake: scaffold gap size wrong estimation (local) 29960916 29965802 455354 450468 NC_000014.9 scf7180000172801 99.92 True fake: scaffold gap size wrong estimation (local) 29952143 29955816 465311 461638 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29946182 29951793 471148 465596 NC_000014.9 scf7180000172801 98.92 True fake: scaffold gap size wrong estimation (local) 29936404 29945942 481273 471312 NC_000014.9 scf7180000172801 95.55 True fake: scaffold gap size wrong estimation (local) 29931681 29936169 485901 481413 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29922302 29931515 495289 485978 NC_000014.9 scf7180000172801 99.72 True fake: scaffold gap size wrong estimation (local) 29914893 29922138 502577 495384 NC_000014.9 scf7180000172801 99.27 True fake: scaffold gap size wrong estimation (local) 29885153 29914615 532190 502862 NC_000014.9 scf7180000172801 98.45 True fake: scaffold gap size wrong estimation (local) 29880103 29884918 537176 532361 NC_000014.9 scf7180000172801 99.98 True fake: not a misassembly (possible transposable element) 43349013 43350484 538767 537296 NC_000014.9 scf7180000172801 100.0 True fake: not a misassembly (possible transposable element) 29872670 29879778 546037 538833 NC_000014.9 scf7180000172801 95.95 True fake: scaffold gap size wrong estimation (local) 29859595 29872487 559102 546210 NC_000014.9 scf7180000172801 99.96 True fake: scaffold gap size wrong estimation (local) 29855677 29859227 562934 559384 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29835843 29854758 583221 564072 NC_000014.9 scf7180000172801 98.39 True fake: scaffold gap size wrong estimation (local) 29831646 29835591 587380 583435 NC_000014.9 scf7180000172801 99.95 True fake: scaffold gap size wrong estimation (local) 29826857 29831462 592104 587499 NC_000014.9 scf7180000172801 99.87 True fake: scaffold gap size wrong estimation (local) 29819671 29826042 598804 592433 NC_000014.9 scf7180000172801 99.92 True fake: scaffold gap size wrong estimation (local) 29816058 29819434 602422 599046 NC_000014.9 scf7180000172801 99.82 True fake: scaffold gap size wrong estimation (local) 29813032 29816057 605638 602613 NC_000014.9 scf7180000172801 99.24 True indel: indel (> 5bp) 29809296 29813008 609351 605639 NC_000014.9 scf7180000172801 99.92 True fake: scaffold gap size wrong estimation (local) 29808566 29809295 610625 609896 NC_000014.9 scf7180000172801 97.26 True fake: scaffold gap size wrong estimation (local) 29804241 29807730 615015 611526 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29781198 29803987 638009 615269 NC_000014.9 scf7180000172801 99.21 True relocation, scaffold gap is present, inconsistency = -6257743 36037062 36038920 639888 638030 NC_000014.9 scf7180000172801 100.0 True fake: not a misassembly (possible transposable element) 80045061 80046011 639970 640920 NC_000014.9 scf7180000172801 100.0 True fake: not a misassembly (possible transposable element) 36034474 36036834 643305 640941 NC_000014.9 scf7180000172801 99.49 True fake: scaffold gap size wrong estimation (local) 36028519 36034269 649129 643542 NC_000014.9 scf7180000172801 97.12 True relocation, inconsistency = 6256046 29763437 29772464 658218 649138 NC_000014.9 scf7180000172801 99.98 True fake: scaffold gap size wrong estimation (local) 29760392 29762949 661152 658658 NC_000014.9 scf7180000172801 97.44 True fake: scaffold gap size wrong estimation (local) 29737360 29760350 684302 661312 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29734311 29737066 687308 684553 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29733265 29734046 688337 687556 NC_000014.9 scf7180000172801 99.87 True fake: scaffold gap size wrong estimation (local) 29731887 29733152 689651 688437 NC_000014.9 scf7180000172801 95.12 True fake: scaffold gap size wrong estimation (local) 29728095 29731422 693434 690107 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29720241 29726922 701040 694535 NC_000014.9 scf7180000172801 97.25 True fake: scaffold gap size wrong estimation (local) 29714964 29720267 706652 701349 NC_000014.9 scf7180000172801 99.92 True fake: scaffold gap size wrong estimation (local) 29689079 29714320 732347 707234 NC_000014.9 scf7180000172801 99.29 True fake: scaffold gap size wrong estimation (local) 29676042 29688926 745529 732702 NC_000014.9 scf7180000172801 99.21 True fake: scaffold gap size wrong estimation (local) 29672331 29675592 749274 746013 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29657835 29672096 763691 749439 NC_000014.9 scf7180000172801 99.89 True fake: scaffold gap size wrong estimation (local) 29648906 29657672 772560 763842 NC_000014.9 scf7180000172801 99.31 True indel: stretch of mismatches 29635035 29648766 786304 772700 NC_000014.9 scf7180000172801 98.79 True fake: scaffold gap size wrong estimation (local) 29632067 29634811 789238 786494 NC_000014.9 scf7180000172801 99.96 True local misassembly 29629992 29631510 791033 789515 NC_000014.9 scf7180000172801 99.74 True indel: indel (<= 5bp) 29628907 29629988 792115 791034 NC_000014.9 scf7180000172801 99.91 True indel: indel (<= 5bp) 29627700 29628906 793323 792117 NC_000014.9 scf7180000172801 99.67 True indel: indel (<= 5bp) 29626916 29627699 794108 793325 NC_000014.9 scf7180000172801 99.62 True fake: scaffold gap size wrong estimation (local) 29622607 29626764 798366 794209 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29621207 29622388 799674 798493 NC_000014.9 scf7180000172801 99.66 True fake: scaffold gap size wrong estimation (local) 29618419 29619905 802379 800891 NC_000014.9 scf7180000172801 99.8 True indel: indel (<= 5bp) 29614964 29618321 805836 802474 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29613093 29614751 807623 805965 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29567862 29612870 852703 807800 NC_000014.9 scf7180000172801 99.3 True fake: scaffold gap size wrong estimation (local) 29566978 29567589 853598 852987 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29561981 29565131 858725 855388 NC_000014.9 scf7180000172801 99.74 True fake: scaffold gap size wrong estimation (local) 29547802 29561860 872727 858827 NC_000014.9 scf7180000172801 98.37 True fake: scaffold gap size wrong estimation (local) 29544570 29547215 875955 873311 NC_000014.9 scf7180000172801 99.89 True fake: scaffold gap size wrong estimation (local) 29542042 29544456 878542 876126 NC_000014.9 scf7180000172801 99.75 True fake: scaffold gap size wrong estimation (local) 29535554 29541950 885022 878622 NC_000014.9 scf7180000172801 99.49 True fake: scaffold gap size wrong estimation (local) 29530223 29534841 890325 885715 NC_000014.9 scf7180000172801 99.61 True fake: scaffold gap size wrong estimation (local) 29524292 29530069 896035 890417 NC_000014.9 scf7180000172801 97.09 True fake: scaffold gap size wrong estimation (local) 29519649 29523676 900775 896587 NC_000014.9 scf7180000172801 98.72 True fake: scaffold gap size wrong estimation (local) 29514015 29519460 906315 900813 NC_000014.9 scf7180000172801 99.07 True fake: scaffold gap size wrong estimation (local) 29511865 29512624 908337 907578 NC_000014.9 scf7180000172801 99.61 True fake: scaffold gap size wrong estimation (local) 29499238 29511617 920870 908488 NC_000014.9 scf7180000172801 99.86 True fake: scaffold gap size wrong estimation (local) 29492633 29499056 927478 921055 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29486579 29492405 933493 927657 NC_000014.9 scf7180000172801 99.9 True fake: scaffold gap size wrong estimation (local) 29485036 29486492 935075 933619 NC_000014.9 scf7180000172801 99.86 True fake: scaffold gap size wrong estimation (local) 29483288 29484239 936718 935765 NC_000014.9 scf7180000172801 99.48 True fake: scaffold gap size wrong estimation (local) 29481426 29483118 938687 936995 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29466390 29478134 954841 942624 NC_000014.9 scf7180000172801 95.98 True fake: scaffold gap size wrong estimation (local) 29458070 29466121 963143 955093 NC_000014.9 scf7180000172801 99.95 True fake: scaffold gap size wrong estimation (local) 29450874 29457871 970246 963249 NC_000014.9 scf7180000172801 99.9 True fake: scaffold gap size wrong estimation (local) 29440547 29450686 980558 970420 NC_000014.9 scf7180000172801 99.95 True fake: scaffold gap size wrong estimation (local) 29437436 29440478 983716 980665 NC_000014.9 scf7180000172801 99.51 True fake: scaffold gap size wrong estimation (local) 29431355 29437217 989774 983954 NC_000014.9 scf7180000172801 99.16 True fake: scaffold gap size wrong estimation (local) 29429368 29431118 991742 989992 NC_000014.9 scf7180000172801 99.83 True fake: scaffold gap size wrong estimation (local) 29413422 29429104 1007562 991929 NC_000014.9 scf7180000172801 99.25 True fake: scaffold gap size wrong estimation (local) 29405151 29412225 1015925 1008714 NC_000014.9 scf7180000172801 98.51 True fake: scaffold gap size wrong estimation (local) 29369662 29404623 1051341 1016367 NC_000014.9 scf7180000172801 99.85 True fake: scaffold gap size wrong estimation (local) 29365995 29369472 1055109 1051632 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29363593 29365750 1057498 1055341 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29349763 29362676 1071276 1058363 NC_000014.9 scf7180000172801 99.98 True fake: scaffold gap size wrong estimation (local) 29334896 29349589 1086001 1071389 NC_000014.9 scf7180000172801 99.23 True fake: scaffold gap size wrong estimation (local) 29321337 29333520 1098877 1087234 NC_000014.9 scf7180000172801 95.37 True fake: scaffold gap size wrong estimation (local) 29285445 29321122 1134333 1099076 NC_000014.9 scf7180000172801 98.56 True fake: scaffold gap size wrong estimation (local) 29281133 29284224 1138847 1135745 NC_000014.9 scf7180000172801 99.94 True fake: scaffold gap size wrong estimation (local) 29269726 29280870 1150174 1139029 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29259516 29269629 1160374 1150263 NC_000014.9 scf7180000172801 99.01 True fake: scaffold gap size wrong estimation (local) 29252125 29258843 1167602 1160920 NC_000014.9 scf7180000172801 99.24 True fake: scaffold gap size wrong estimation (local) 29247395 29250240 1172175 1169330 NC_000014.9 scf7180000172801 99.3 True fake: scaffold gap size wrong estimation (local) 29246586 29247101 1173298 1172783 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 29244818 29246585 1175237 1173470 NC_000014.9 scf7180000172801 99.89 True fake: scaffold gap size wrong estimation (local) 29211985 29244444 1208023 1175571 NC_000014.9 scf7180000172801 99.9 True fake: scaffold gap size wrong estimation (local) 29203337 29211707 1216624 1208235 NC_000014.9 scf7180000172801 99.42 True fake: scaffold gap size wrong estimation (local) 29158270 29203286 1261939 1216715 NC_000014.9 scf7180000172801 99.02 True fake: scaffold gap size wrong estimation (local) 29153904 29158093 1266323 1262134 NC_000014.9 scf7180000172801 99.88 True fake: scaffold gap size wrong estimation (local) 29151285 29153692 1268786 1266462 NC_000014.9 scf7180000172801 96.4 True fake: scaffold gap size wrong estimation (local) 29135118 29150930 1285012 1269200 NC_000014.9 scf7180000172801 99.97 True fake: scaffold gap size wrong estimation (local) 29125797 29134002 1294235 1286024 NC_000014.9 scf7180000172801 99.85 True fake: scaffold gap size wrong estimation (local) 29122131 29125647 1298059 1294410 NC_000014.9 scf7180000172801 95.43 True fake: scaffold gap size wrong estimation (local) 29110737 29121081 1309300 1299035 NC_000014.9 scf7180000172801 98.67 True fake: scaffold gap size wrong estimation (local) 29081549 29110540 1338863 1309511 NC_000014.9 scf7180000172801 98.47 True fake: not a misassembly (possible transposable element) 85210625 85211470 1338882 1339727 NC_000014.9 scf7180000172801 100.0 True fake: not a misassembly (possible transposable element) 29046423 29081570 1374768 1339748 NC_000014.9 scf7180000172801 99.38 True fake: scaffold gap size wrong estimation (local) 29026981 29046163 1394236 1375018 NC_000014.9 scf7180000172801 99.92 True indel: stretch of mismatches 29026012 29026756 1395205 1394461 NC_000014.9 scf7180000172801 100.0 True indel: indel (<= 5bp) 29024850 29026010 1396366 1395206 NC_000014.9 scf7180000172801 98.11 True fake: scaffold gap size wrong estimation (local) 29007404 29022210 1413461 1398710 NC_000014.9 scf7180000172801 98.22 True fake: scaffold gap size wrong estimation (local) 29005321 29007147 1415451 1413625 NC_000014.9 scf7180000172801 99.95 True fake: scaffold gap size wrong estimation (local) 29000808 29001866 1421468 1420410 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 28994874 29000688 1429329 1423347 NC_000014.9 scf7180000172801 97.23 True fake: scaffold gap size wrong estimation (local) 28982120 28993231 1441925 1430808 NC_000014.9 scf7180000172801 99.65 True fake: scaffold gap size wrong estimation (local) 28958202 28981113 1465657 1442888 NC_000014.9 scf7180000172801 99.22 True fake: scaffold gap size wrong estimation (local) 28957122 28957954 1467258 1466426 NC_000014.9 scf7180000172801 97.6 True fake: scaffold gap size wrong estimation (local) 28949342 28956066 1475456 1468439 NC_000014.9 scf7180000172801 96.64 True fake: scaffold gap size wrong estimation (local) 28941278 28948691 1483291 1475878 NC_000014.9 scf7180000172801 99.99 True fake: scaffold gap size wrong estimation (local) 28940004 28940529 1484567 1484042 NC_000014.9 scf7180000172801 100.0 True fake: scaffold gap size wrong estimation (local) 28920584 28938218 1503952 1486291 NC_000014.9 scf7180000172801 99.86 True fake: scaffold gap size wrong estimation (local) 28918046 28920324 1506254 1504081 NC_000014.9 scf7180000172801 95.31 True fake: scaffold gap size wrong estimation (local) 28908943 28918040 1515561 1506476 NC_000014.9 scf7180000172801 99.48 True relocation, scaffold gap is present, inconsistency = 9514512 19391102 19391685 1518890 1518307 NC_000014.9 scf7180000172801 99.49 True CONTIG scf7180000172801 1518948 misassembled 39330783 39334221 148 3539 NC_000014.9 scf7180000172802 98.27 True fake: scaffold gap size wrong estimation (local) 39334657 39342097 3967 11426 NC_000014.9 scf7180000172802 99.7 True fake: scaffold gap size wrong estimation (local) 39342520 39345064 11815 14359 NC_000014.9 scf7180000172802 99.92 True fake: scaffold gap size wrong estimation (local) 39345308 39351379 14544 20688 NC_000014.9 scf7180000172802 98.65 True fake: scaffold gap size wrong estimation (local) 39352200 39353767 21553 23120 NC_000014.9 scf7180000172802 99.74 True fake: scaffold gap size wrong estimation (local) 39358222 39358959 28975 29712 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39359222 39359997 30334 31109 NC_000014.9 scf7180000172802 100.0 True local misassembly 39360207 39361451 31110 32354 NC_000014.9 scf7180000172802 97.67 True fake: scaffold gap size wrong estimation (local) 39361687 39364179 32579 35071 NC_000014.9 scf7180000172802 99.92 True fake: scaffold gap size wrong estimation (local) 39364318 39373621 35175 44491 NC_000014.9 scf7180000172802 99.44 True fake: scaffold gap size wrong estimation (local) 39373767 39376044 44648 46925 NC_000014.9 scf7180000172802 99.91 True local misassembly 39376198 39376956 46926 47684 NC_000014.9 scf7180000172802 96.05 True fake: scaffold gap size wrong estimation (local) 39377237 39379608 48186 50557 NC_000014.9 scf7180000172802 99.87 True indel: indel (> 5bp) 39379623 39380596 50558 51531 NC_000014.9 scf7180000172802 97.84 True fake: scaffold gap size wrong estimation (local) 39380705 39392004 51651 62981 NC_000014.9 scf7180000172802 99.83 True fake: scaffold gap size wrong estimation (local) 39392262 39392917 63229 63884 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39393105 39403481 63977 74520 NC_000014.9 scf7180000172802 95.21 True fake: scaffold gap size wrong estimation (local) 39403823 39404420 74853 75450 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39404931 39415675 75957 86617 NC_000014.9 scf7180000172802 98.79 True fake: scaffold gap size wrong estimation (local) 39415926 39417548 86810 88432 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39418792 39433488 89624 104437 NC_000014.9 scf7180000172802 98.9 True fake: scaffold gap size wrong estimation (local) 39433989 39444115 104939 115282 NC_000014.9 scf7180000172802 97.93 True fake: scaffold gap size wrong estimation (local) 39444340 39473243 115488 144523 NC_000014.9 scf7180000172802 97.73 True fake: scaffold gap size wrong estimation (local) 39473413 39477706 144669 148982 NC_000014.9 scf7180000172802 99.7 True fake: scaffold gap size wrong estimation (local) 39478011 39481271 149166 152455 NC_000014.9 scf7180000172802 99.63 True fake: scaffold gap size wrong estimation (local) 39483518 39495257 154424 166375 NC_000014.9 scf7180000172802 98.65 True fake: scaffold gap size wrong estimation (local) 39496864 39511091 168369 182693 NC_000014.9 scf7180000172802 99.29 True fake: scaffold gap size wrong estimation (local) 39512605 39516936 184034 188357 NC_000014.9 scf7180000172802 99.77 True fake: scaffold gap size wrong estimation (local) 39518453 39520231 189731 191509 NC_000014.9 scf7180000172802 99.89 True fake: scaffold gap size wrong estimation (local) 39520350 39521582 191821 193053 NC_000014.9 scf7180000172802 99.43 True local misassembly 39520146 39520782 194422 195058 NC_000014.9 scf7180000172802 99.84 True fake: scaffold gap size wrong estimation (local) 39528463 39531853 201122 204421 NC_000014.9 scf7180000172802 97.19 True fake: scaffold gap size wrong estimation (local) 39532343 39550293 204886 222828 NC_000014.9 scf7180000172802 99.39 True fake: scaffold gap size wrong estimation (local) 39552406 39556890 224661 229161 NC_000014.9 scf7180000172802 99.87 True fake: scaffold gap size wrong estimation (local) 39557055 39560316 229258 232519 NC_000014.9 scf7180000172802 99.94 True fake: scaffold gap size wrong estimation (local) 39560846 39564952 232981 237035 NC_000014.9 scf7180000172802 98.04 True fake: scaffold gap size wrong estimation (local) 39565051 39571447 237683 244213 NC_000014.9 scf7180000172802 96.44 True fake: not a misassembly (possible transposable element) 78552830 78553950 245367 244247 NC_000014.9 scf7180000172802 100.0 True fake: not a misassembly (possible transposable element) 39571431 39584302 245692 258577 NC_000014.9 scf7180000172802 99.89 True fake: scaffold gap size wrong estimation (local) 39590165 39595217 266314 271367 NC_000014.9 scf7180000172802 99.51 True fake: scaffold gap size wrong estimation (local) 39595744 39596251 271730 272237 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39596654 39599367 272554 275287 NC_000014.9 scf7180000172802 99.59 True fake: scaffold gap size wrong estimation (local) 39599853 39600555 275895 276597 NC_000014.9 scf7180000172802 99.86 True fake: scaffold gap size wrong estimation (local) 39601743 39602373 277587 278217 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39602654 39607178 278541 283106 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39607396 39613239 283217 289180 NC_000014.9 scf7180000172802 98.25 True fake: scaffold gap size wrong estimation (local) 39613437 39617931 289327 293831 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39618053 39623016 293975 299000 NC_000014.9 scf7180000172802 98.6 True fake: scaffold gap size wrong estimation (local) 39623414 39629206 299392 305179 NC_000014.9 scf7180000172802 99.65 True fake: scaffold gap size wrong estimation (local) 39630978 39633514 306785 309365 NC_000014.9 scf7180000172802 99.96 True fake: scaffold gap size wrong estimation (local) 39639516 39657334 316177 334065 NC_000014.9 scf7180000172802 99.74 True fake: scaffold gap size wrong estimation (local) 39661983 39666765 339486 344268 NC_000014.9 scf7180000172802 99.98 True fake: scaffold gap size wrong estimation (local) 39666908 39697610 344356 375378 NC_000014.9 scf7180000172802 98.6 True fake: scaffold gap size wrong estimation (local) 39703524 39707238 382567 386281 NC_000014.9 scf7180000172802 99.84 True fake: scaffold gap size wrong estimation (local) 39707370 39727725 386393 406748 NC_000014.9 scf7180000172802 99.89 True fake: scaffold gap size wrong estimation (local) 39728253 39752267 407217 431326 NC_000014.9 scf7180000172802 98.53 True fake: scaffold gap size wrong estimation (local) 39752459 39757604 431459 436604 NC_000014.9 scf7180000172802 99.92 True fake: scaffold gap size wrong estimation (local) 39757605 39761758 437738 441891 NC_000014.9 scf7180000172802 99.86 True fake: scaffold gap size wrong estimation (local) 39761947 39785794 442048 465887 NC_000014.9 scf7180000172802 99.74 True fake: scaffold gap size wrong estimation (local) 39785940 39796150 466020 476259 NC_000014.9 scf7180000172802 99.73 True fake: scaffold gap size wrong estimation (local) 39796369 39811535 476400 491570 NC_000014.9 scf7180000172802 99.85 True fake: scaffold gap size wrong estimation (local) 39811756 39820312 491709 500194 NC_000014.9 scf7180000172802 98.88 True fake: scaffold gap size wrong estimation (local) 39821460 39822419 501350 502329 NC_000014.9 scf7180000172802 99.58 True fake: scaffold gap size wrong estimation (local) 39823871 39865184 503899 546416 NC_000014.9 scf7180000172802 96.61 True fake: scaffold gap size wrong estimation (local) 39865495 39866072 546771 547348 NC_000014.9 scf7180000172802 99.83 True fake: scaffold gap size wrong estimation (local) 39866297 39872528 547461 553694 NC_000014.9 scf7180000172802 99.58 True fake: scaffold gap size wrong estimation (local) 39872722 39893658 553858 574751 NC_000014.9 scf7180000172802 99.52 True fake: scaffold gap size wrong estimation (local) 39894396 39896326 575006 576936 NC_000014.9 scf7180000172802 99.95 True fake: scaffold gap size wrong estimation (local) 39897424 39898429 578045 579049 NC_000014.9 scf7180000172802 99.6 True fake: scaffold gap size wrong estimation (local) 39899537 39901778 580115 582344 NC_000014.9 scf7180000172802 99.2 True fake: scaffold gap size wrong estimation (local) 39901811 39921468 582445 601908 NC_000014.9 scf7180000172802 98.7 True fake: scaffold gap size wrong estimation (local) 39925106 39926323 608123 609340 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 39926492 39928716 609704 611903 NC_000014.9 scf7180000172802 98.41 True fake: scaffold gap size wrong estimation (local) 39930188 39935437 613140 618389 NC_000014.9 scf7180000172802 99.98 True fake: scaffold gap size wrong estimation (local) 39937204 39941861 619949 624671 NC_000014.9 scf7180000172802 99.53 True fake: scaffold gap size wrong estimation (local) 39943028 39950392 625714 633260 NC_000014.9 scf7180000172802 97.86 True fake: scaffold gap size wrong estimation (local) 39950774 39960666 633644 643518 NC_000014.9 scf7180000172802 99.69 True fake: scaffold gap size wrong estimation (local) 39960997 40001011 643792 684080 NC_000014.9 scf7180000172802 99.45 True fake: scaffold gap size wrong estimation (local) 40001217 40009212 684180 692195 NC_000014.9 scf7180000172802 99.91 True fake: scaffold gap size wrong estimation (local) 40010270 40022305 693545 705576 NC_000014.9 scf7180000172802 99.9 True fake: scaffold gap size wrong estimation (local) 40023403 40080808 706613 764143 NC_000014.9 scf7180000172802 98.48 True indel: indel (> 5bp) 40080948 40083463 764266 766782 NC_000014.9 scf7180000172802 99.44 True fake: scaffold gap size wrong estimation (local) 40083618 40085196 766866 768607 NC_000014.9 scf7180000172802 99.49 True fake: scaffold gap size wrong estimation (local) 40086572 40087107 769777 770312 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 40089171 40089722 772034 772585 NC_000014.9 scf7180000172802 99.28 True fake: scaffold gap size wrong estimation (local) 40090034 40101701 772900 784399 NC_000014.9 scf7180000172802 98.13 True fake: scaffold gap size wrong estimation (local) 40101958 40109012 784637 791636 NC_000014.9 scf7180000172802 98.79 True fake: scaffold gap size wrong estimation (local) 40109312 40112772 791885 795643 NC_000014.9 scf7180000172802 99.62 True fake: scaffold gap size wrong estimation (local) 40113047 40114402 795965 797320 NC_000014.9 scf7180000172802 99.78 True fake: scaffold gap size wrong estimation (local) 40114635 40125415 797562 808678 NC_000014.9 scf7180000172802 97.41 True fake: scaffold gap size wrong estimation (local) 40125683 40127637 808896 810850 NC_000014.9 scf7180000172802 99.74 True indel: indel (<= 5bp) 40127640 40128232 810851 811443 NC_000014.9 scf7180000172802 100.0 True indel: indel (> 5bp) 40128245 40132940 811444 816139 NC_000014.9 scf7180000172802 99.23 True fake: scaffold gap size wrong estimation (local) 40132941 40133822 816158 817039 NC_000014.9 scf7180000172802 99.43 True indel: indel (<= 5bp) 40133825 40134977 817040 818192 NC_000014.9 scf7180000172802 99.65 True indel: indel (> 5bp) 40135248 40140608 818423 823783 NC_000014.9 scf7180000172802 99.59 True relocation, inconsistency = 7844 40148453 40150311 823784 825642 NC_000014.9 scf7180000172802 98.87 True indel: indel (> 5bp) 40150374 40151846 825654 827126 NC_000014.9 scf7180000172802 98.37 True fake: scaffold gap size wrong estimation (local) 40151847 40156479 827450 832082 NC_000014.9 scf7180000172802 99.72 True fake: scaffold gap size wrong estimation (local) 40156607 40173800 832155 849401 NC_000014.9 scf7180000172802 99.69 True fake: scaffold gap size wrong estimation (local) 40175194 40184375 850582 859709 NC_000014.9 scf7180000172802 99.28 True fake: scaffold gap size wrong estimation (local) 40185628 40186516 860737 861625 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 40186597 40187148 861707 862258 NC_000014.9 scf7180000172802 100.0 True fake: scaffold gap size wrong estimation (local) 40187338 40213181 862399 888509 NC_000014.9 scf7180000172802 98.84 True fake: scaffold gap size wrong estimation (local) 40213443 40263522 888761 939460 NC_000014.9 scf7180000172802 98.02 True fake: not a misassembly (possible transposable element) 60933309 60935346 939481 941518 NC_000014.9 scf7180000172802 99.95 True fake: not a misassembly (possible transposable element) 40263732 40266071 941539 943878 NC_000014.9 scf7180000172802 99.87 True fake: scaffold gap size wrong estimation (local) 40266885 40290410 944585 968067 NC_000014.9 scf7180000172802 99.73 True fake: scaffold gap size wrong estimation (local) 40291853 40321962 969412 999541 NC_000014.9 scf7180000172802 99.83 True fake: scaffold gap size wrong estimation (local) 40322393 40326271 999797 1003682 NC_000014.9 scf7180000172802 99.9 True CONTIG scf7180000172802 1004126 misassembled 52035969 52044277 304 8600 NC_000014.9 scf7180000172803 99.5 True fake: scaffold gap size wrong estimation (local) 52044514 52057469 8814 21598 NC_000014.9 scf7180000172803 98.3 True fake: scaffold gap size wrong estimation (local) 52057714 52065467 21758 29511 NC_000014.9 scf7180000172803 99.92 True fake: scaffold gap size wrong estimation (local) 52066029 52082886 30001 46852 NC_000014.9 scf7180000172803 99.68 True fake: scaffold gap size wrong estimation (local) 52084105 52084645 48044 48584 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 52085205 52085980 48781 49556 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 84690182 84691302 51717 52837 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 52083190 52083860 52838 53508 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 52085817 52109354 55177 78939 NC_000014.9 scf7180000172803 99.04 True fake: scaffold gap size wrong estimation (local) 52109460 52112231 79059 81841 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 52112283 52113275 81983 82975 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 52113788 52114956 83295 84463 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 52115086 52122171 84621 91707 NC_000014.9 scf7180000172803 99.82 True relocation, scaffold gap is present, inconsistency = 33973592 86110911 86116128 106855 112072 NC_000014.9 scf7180000172803 99.85 True fake: scaffold gap size wrong estimation (local) 86116784 86117913 112650 113777 NC_000014.9 scf7180000172803 99.73 True fake: not a misassembly (possible transposable element) 52147077 52148187 114134 115235 NC_000014.9 scf7180000172803 98.99 True fake: not a misassembly (possible transposable element) 86119475 86119975 115353 115853 NC_000014.9 scf7180000172803 100.0 True relocation, scaffold gap is present, inconsistency = -33971483 52148866 52157300 116227 124670 NC_000014.9 scf7180000172803 99.51 True fake: not a misassembly (possible transposable element) 86120211 86125011 124725 129525 NC_000014.9 scf7180000172803 99.92 True fake: not a misassembly (possible transposable element) 52157504 52159437 129576 131509 NC_000014.9 scf7180000172803 98.81 True relocation, scaffold gap is present, inconsistency = 33965617 86125105 86130318 131560 136773 NC_000014.9 scf7180000172803 100.0 True relocation, inconsistency = 20282747 106413066 106414229 137937 136774 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 106421761 106427063 138456 143760 NC_000014.9 scf7180000172803 99.34 True fake: not a misassembly (possible transposable element) 106410766 106411594 146480 145652 NC_000014.9 scf7180000172803 99.88 True fake: scaffold gap size wrong estimation (local) 106408342 106409217 149129 148254 NC_000014.9 scf7180000172803 100.0 True relocation, scaffold gap is present, inconsistency = 54241542 52164828 52166434 149495 151099 NC_000014.9 scf7180000172803 99.32 True fake: scaffold gap size wrong estimation (local) 52168226 52169259 152678 153711 NC_000014.9 scf7180000172803 98.65 True relocation, scaffold gap is present, inconsistency = 42646745 94816055 94817213 153762 154920 NC_000014.9 scf7180000172803 99.83 True fake: scaffold gap size wrong estimation (local) 94818285 94821108 156040 158863 NC_000014.9 scf7180000172803 99.75 True fake: scaffold gap size wrong estimation (local) 94821294 94829493 159045 167206 NC_000014.9 scf7180000172803 99.47 True fake: scaffold gap size wrong estimation (local) 94829994 94847289 167703 184967 NC_000014.9 scf7180000172803 99.53 True fake: scaffold gap size wrong estimation (local) 94847454 94851674 184988 189302 NC_000014.9 scf7180000172803 99.83 True fake: scaffold gap size wrong estimation (local) 94851898 94856190 189444 193736 NC_000014.9 scf7180000172803 99.93 True fake: scaffold gap size wrong estimation (local) 94857354 94862640 194808 200090 NC_000014.9 scf7180000172803 99.79 True fake: scaffold gap size wrong estimation (local) 94863101 94865597 200792 203245 NC_000014.9 scf7180000172803 98.18 True fake: scaffold gap size wrong estimation (local) 94865813 94869790 203560 207457 NC_000014.9 scf7180000172803 97.6 True fake: scaffold gap size wrong estimation (local) 94870733 94871693 207877 208837 NC_000014.9 scf7180000172803 99.69 True fake: scaffold gap size wrong estimation (local) 94872560 94874323 209795 211557 NC_000014.9 scf7180000172803 99.66 True local misassembly 94871799 94872572 211587 212382 NC_000014.9 scf7180000172803 99.1 True fake: scaffold gap size wrong estimation (local) 94874387 94889138 212463 227601 NC_000014.9 scf7180000172803 97.26 True fake: scaffold gap size wrong estimation (local) 94889350 94898870 227786 237434 NC_000014.9 scf7180000172803 98.24 True fake: scaffold gap size wrong estimation (local) 94899080 94913693 237561 252189 NC_000014.9 scf7180000172803 99.77 True fake: scaffold gap size wrong estimation (local) 94913848 94915721 252306 254179 NC_000014.9 scf7180000172803 99.95 True fake: scaffold gap size wrong estimation (local) 94916095 94917805 254580 256264 NC_000014.9 scf7180000172803 97.36 True fake: scaffold gap size wrong estimation (local) 94918202 94924576 256667 263049 NC_000014.9 scf7180000172803 99.8 True fake: scaffold gap size wrong estimation (local) 94925222 94928989 263611 267378 NC_000014.9 scf7180000172803 99.89 True fake: scaffold gap size wrong estimation (local) 94929264 94932984 267562 271282 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 94933156 94948986 271393 286958 NC_000014.9 scf7180000172803 97.46 True fake: scaffold gap size wrong estimation (local) 94949454 94952033 287565 290144 NC_000014.9 scf7180000172803 99.96 True indel: indel (<= 5bp) 94952035 94952575 290145 290685 NC_000014.9 scf7180000172803 100.0 True local misassembly 94952922 94953567 290686 291331 NC_000014.9 scf7180000172803 96.75 True fake: scaffold gap size wrong estimation (local) 94953568 94967426 291463 305321 NC_000014.9 scf7180000172803 99.88 True indel: indel (> 5bp) 94967443 94969160 305322 307039 NC_000014.9 scf7180000172803 99.71 True fake: scaffold gap size wrong estimation (local) 94969161 94971372 308733 310944 NC_000014.9 scf7180000172803 99.68 True indel: indel (<= 5bp) 94971374 94973502 310945 313073 NC_000014.9 scf7180000172803 99.95 True fake: scaffold gap size wrong estimation (local) 94973672 94976777 313094 316293 NC_000014.9 scf7180000172803 99.94 True fake: scaffold gap size wrong estimation (local) 94977067 94980878 316534 320334 NC_000014.9 scf7180000172803 99.4 True fake: scaffold gap size wrong estimation (local) 94981142 94983465 320548 322871 NC_000014.9 scf7180000172803 99.78 True fake: scaffold gap size wrong estimation (local) 94983910 94988174 323244 327722 NC_000014.9 scf7180000172803 95.12 True fake: scaffold gap size wrong estimation (local) 94988334 95010132 327859 349681 NC_000014.9 scf7180000172803 99.37 True fake: scaffold gap size wrong estimation (local) 95010371 95036659 349807 376046 NC_000014.9 scf7180000172803 99.55 True fake: scaffold gap size wrong estimation (local) 95036857 95056023 376180 395343 NC_000014.9 scf7180000172803 99.62 True fake: scaffold gap size wrong estimation (local) 95056225 95059646 395533 398950 NC_000014.9 scf7180000172803 99.65 True fake: scaffold gap size wrong estimation (local) 95059837 95062737 399134 402038 NC_000014.9 scf7180000172803 99.79 True fake: scaffold gap size wrong estimation (local) 95062814 95084901 402077 424161 NC_000014.9 scf7180000172803 99.8 True fake: scaffold gap size wrong estimation (local) 95084975 95107425 424718 447163 NC_000014.9 scf7180000172803 99.93 True fake: scaffold gap size wrong estimation (local) 95107525 95138752 447258 477954 NC_000014.9 scf7180000172803 98.08 True fake: scaffold gap size wrong estimation (local) 95139002 95158805 478335 498097 NC_000014.9 scf7180000172803 99.56 True fake: scaffold gap size wrong estimation (local) 95158887 95159643 498204 498960 NC_000014.9 scf7180000172803 100.0 True local misassembly 95157693 95158193 499011 499511 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 95159831 95170174 499815 510158 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 95170384 95175654 510419 515669 NC_000014.9 scf7180000172803 99.54 True fake: not a misassembly (possible transposable element) 48760734 48766943 517767 524010 NC_000014.9 scf7180000172803 99.68 True fake: not a misassembly (possible transposable element) 95177096 95177794 524031 524729 NC_000014.9 scf7180000172803 99.86 True relocation, scaffold gap is present, inconsistency = -46411607 48767028 48767763 525570 526305 NC_000014.9 scf7180000172803 99.73 True indel: indel (<= 5bp) 48767764 48771123 526308 529667 NC_000014.9 scf7180000172803 99.82 True fake: scaffold gap size wrong estimation (local) 48771124 48773569 530443 532888 NC_000014.9 scf7180000172803 99.96 True relocation, scaffold gap is present, inconsistency = 46405654 95179279 95198048 532944 551711 NC_000014.9 scf7180000172803 99.96 True fake: not a misassembly (possible transposable element) 48773999 48775797 552032 553830 NC_000014.9 scf7180000172803 99.94 True fake: not a misassembly (possible transposable element) 95198312 95201074 553883 556645 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 48775798 48778559 557179 559940 NC_000014.9 scf7180000172803 99.53 True fake: not a misassembly (possible transposable element) 95201575 95204491 560034 562950 NC_000014.9 scf7180000172803 99.38 True indel: indel (<= 5bp) 95204494 95210100 562951 568557 NC_000014.9 scf7180000172803 99.54 True fake: not a misassembly (possible transposable element) 48779936 48784182 568608 572919 NC_000014.9 scf7180000172803 98.28 True fake: not a misassembly (possible transposable element) 95210324 95219915 572985 582577 NC_000014.9 scf7180000172803 99.74 True relocation, inconsistency = -34959271 60260645 60261892 582578 583825 NC_000014.9 scf7180000172803 99.92 True relocation, scaffold gap is present, inconsistency = -11477578 48784364 48793272 583875 592788 NC_000014.9 scf7180000172803 99.74 True relocation, scaffold gap is present, inconsistency = -14750 48778581 48779439 592847 593705 NC_000014.9 scf7180000172803 99.67 True relocation, inconsistency = 10859561 59639001 59640384 595089 593706 NC_000014.9 scf7180000172803 99.86 True relocation, scaffold gap is present, inconsistency = 10843928 48793416 48795015 595147 596746 NC_000014.9 scf7180000172803 99.88 True relocation, scaffold gap is present, inconsistency = 46425381 95220468 95228713 596818 605421 NC_000014.9 scf7180000172803 96.0 True fake: not a misassembly (possible transposable element) 48796383 48796978 605498 606093 NC_000014.9 scf7180000172803 99.33 True fake: not a misassembly (possible transposable element) 95228887 95231216 606162 608491 NC_000014.9 scf7180000172803 99.87 True fake: scaffold gap size wrong estimation (local) 95231473 95242241 609193 619961 NC_000014.9 scf7180000172803 99.92 True fake: scaffold gap size wrong estimation (local) 95242696 95245176 620284 622835 NC_000014.9 scf7180000172803 97.3 True fake: scaffold gap size wrong estimation (local) 95245302 95246507 622966 624159 NC_000014.9 scf7180000172803 99.0 True fake: scaffold gap size wrong estimation (local) 95246619 95253667 624243 631249 NC_000014.9 scf7180000172803 99.37 True fake: scaffold gap size wrong estimation (local) 95253879 95260189 631469 637668 NC_000014.9 scf7180000172803 98.24 True fake: scaffold gap size wrong estimation (local) 95262607 95263253 639986 640632 NC_000014.9 scf7180000172803 100.0 True local misassembly 95260441 95262651 640714 642924 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 95263187 95267771 643395 647899 NC_000014.9 scf7180000172803 98.18 True fake: not a misassembly (possible transposable element) 42577437 42578072 647932 648567 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 95267733 95279580 648568 660200 NC_000014.9 scf7180000172803 97.58 True fake: scaffold gap size wrong estimation (local) 95279780 95319884 660341 700712 NC_000014.9 scf7180000172803 98.65 True fake: scaffold gap size wrong estimation (local) 95320116 95324652 700913 705448 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 95324870 95325732 705642 706504 NC_000014.9 scf7180000172803 99.88 True fake: scaffold gap size wrong estimation (local) 95325876 95343348 706627 724105 NC_000014.9 scf7180000172803 99.22 True fake: scaffold gap size wrong estimation (local) 95343430 95344080 724126 724807 NC_000014.9 scf7180000172803 98.04 True fake: scaffold gap size wrong estimation (local) 95344358 95346352 725184 727174 NC_000014.9 scf7180000172803 99.7 True fake: scaffold gap size wrong estimation (local) 95347636 95350896 728285 731559 NC_000014.9 scf7180000172803 99.88 True fake: scaffold gap size wrong estimation (local) 95350997 95353622 731651 734375 NC_000014.9 scf7180000172803 97.39 True fake: scaffold gap size wrong estimation (local) 95353798 95366332 734527 747046 NC_000014.9 scf7180000172803 99.43 True fake: scaffold gap size wrong estimation (local) 95366497 95369069 747140 749761 NC_000014.9 scf7180000172803 98.76 True fake: scaffold gap size wrong estimation (local) 95369152 95372093 749850 752789 NC_000014.9 scf7180000172803 99.86 True fake: scaffold gap size wrong estimation (local) 95372337 95374965 752927 755555 NC_000014.9 scf7180000172803 99.81 True local misassembly 95375308 95376815 755556 757063 NC_000014.9 scf7180000172803 99.93 True fake: scaffold gap size wrong estimation (local) 95376931 95378741 757594 759402 NC_000014.9 scf7180000172803 99.67 True fake: scaffold gap size wrong estimation (local) 95379067 95389150 759601 769662 NC_000014.9 scf7180000172803 99.61 True fake: scaffold gap size wrong estimation (local) 95389408 95400076 769861 780525 NC_000014.9 scf7180000172803 99.86 True fake: scaffold gap size wrong estimation (local) 95400874 95403641 781282 784051 NC_000014.9 scf7180000172803 99.75 True fake: scaffold gap size wrong estimation (local) 95403853 95415710 784208 796038 NC_000014.9 scf7180000172803 99.44 True fake: scaffold gap size wrong estimation (local) 95415956 95421074 796250 801368 NC_000014.9 scf7180000172803 99.84 True fake: scaffold gap size wrong estimation (local) 95421075 95423556 801762 804243 NC_000014.9 scf7180000172803 99.44 True local misassembly 95423914 95425030 804244 805360 NC_000014.9 scf7180000172803 99.64 True fake: scaffold gap size wrong estimation (local) 95425245 95426766 805797 807318 NC_000014.9 scf7180000172803 99.54 True fake: scaffold gap size wrong estimation (local) 95426951 95430567 807468 811075 NC_000014.9 scf7180000172803 99.09 True fake: scaffold gap size wrong estimation (local) 95430828 95447146 811357 828075 NC_000014.9 scf7180000172803 96.45 True fake: scaffold gap size wrong estimation (local) 95447404 95456891 828285 837726 NC_000014.9 scf7180000172803 98.63 True fake: scaffold gap size wrong estimation (local) 95457102 95470504 837930 851235 NC_000014.9 scf7180000172803 98.62 True fake: scaffold gap size wrong estimation (local) 95470736 95494956 851428 875765 NC_000014.9 scf7180000172803 95.22 True indel: stretch of mismatches 95495083 95499862 875892 880669 NC_000014.9 scf7180000172803 99.54 True fake: scaffold gap size wrong estimation (local) 95500101 95511730 880845 892419 NC_000014.9 scf7180000172803 99.28 True fake: scaffold gap size wrong estimation (local) 95513758 95528020 894119 908383 NC_000014.9 scf7180000172803 99.56 True fake: scaffold gap size wrong estimation (local) 95528290 95553866 908750 934207 NC_000014.9 scf7180000172803 98.54 True fake: not a misassembly (possible transposable element) 52220649 52222585 936144 934208 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 95553840 95555561 936391 938111 NC_000014.9 scf7180000172803 99.83 True fake: scaffold gap size wrong estimation (local) 95555794 95558847 938405 941555 NC_000014.9 scf7180000172803 97.38 True fake: scaffold gap size wrong estimation (local) 95559092 95559734 941823 942465 NC_000014.9 scf7180000172803 99.22 True fake: scaffold gap size wrong estimation (local) 95559999 95564806 942619 947361 NC_000014.9 scf7180000172803 98.02 True fake: scaffold gap size wrong estimation (local) 95565394 95567474 947960 950040 NC_000014.9 scf7180000172803 99.71 True fake: scaffold gap size wrong estimation (local) 95567718 95569366 950282 951930 NC_000014.9 scf7180000172803 99.76 True indel: indel (> 5bp) 95569408 95570121 951949 952662 NC_000014.9 scf7180000172803 99.58 True fake: scaffold gap size wrong estimation (local) 95570317 95572882 953599 956164 NC_000014.9 scf7180000172803 99.61 True fake: scaffold gap size wrong estimation (local) 95573194 95578793 956607 962086 NC_000014.9 scf7180000172803 97.44 True fake: scaffold gap size wrong estimation (local) 95579944 95580496 963099 963651 NC_000014.9 scf7180000172803 100.0 True indel: indel (<= 5bp) 95580497 95582505 963653 965661 NC_000014.9 scf7180000172803 98.81 True fake: scaffold gap size wrong estimation (local) 95582506 95583455 965889 966838 NC_000014.9 scf7180000172803 97.47 True local misassembly 95583947 95585165 966839 968057 NC_000014.9 scf7180000172803 98.28 True fake: scaffold gap size wrong estimation (local) 95585166 95587032 968958 970824 NC_000014.9 scf7180000172803 99.36 True fake: scaffold gap size wrong estimation (local) 95587641 95590999 971437 974795 NC_000014.9 scf7180000172803 99.91 True fake: scaffold gap size wrong estimation (local) 95591622 95593776 975509 977663 NC_000014.9 scf7180000172803 98.84 True indel: indel (> 5bp) 95594056 95595075 977958 978977 NC_000014.9 scf7180000172803 99.12 True indel: indel (<= 5bp) 95595076 95596969 978980 980873 NC_000014.9 scf7180000172803 99.89 True fake: scaffold gap size wrong estimation (local) 95597365 95602666 981243 986546 NC_000014.9 scf7180000172803 99.7 True fake: scaffold gap size wrong estimation (local) 95602897 95608138 986748 991995 NC_000014.9 scf7180000172803 99.58 True fake: scaffold gap size wrong estimation (local) 95608307 95622124 992112 1005830 NC_000014.9 scf7180000172803 98.6 True fake: scaffold gap size wrong estimation (local) 95622380 95625936 1006103 1009666 NC_000014.9 scf7180000172803 99.3 True fake: not a misassembly (possible transposable element) 88985336 88987026 1009977 1011667 NC_000014.9 scf7180000172803 99.94 True fake: not a misassembly (possible transposable element) 95625973 95627569 1011668 1013264 NC_000014.9 scf7180000172803 99.94 True fake: scaffold gap size wrong estimation (local) 95627788 95630550 1013361 1016123 NC_000014.9 scf7180000172803 99.82 True fake: scaffold gap size wrong estimation (local) 95631926 95633209 1017423 1018706 NC_000014.9 scf7180000172803 98.36 True indel: indel (> 5bp) 95633234 95634432 1018707 1019905 NC_000014.9 scf7180000172803 99.92 True fake: scaffold gap size wrong estimation (local) 95634433 95638275 1020407 1024249 NC_000014.9 scf7180000172803 99.79 True fake: scaffold gap size wrong estimation (local) 95638455 95652800 1024421 1038638 NC_000014.9 scf7180000172803 98.84 True relocation, scaffold gap is present, inconsistency = -43488969 52163852 52164911 1038659 1039718 NC_000014.9 scf7180000172803 99.62 True fake: scaffold gap size wrong estimation (local) 52166398 52167898 1039739 1041239 NC_000014.9 scf7180000172803 98.27 True fake: scaffold gap size wrong estimation (local) 52169274 52170935 1042422 1044083 NC_000014.9 scf7180000172803 99.16 True relocation, scaffold gap is present, inconsistency = 43483052 95654008 95662902 1044104 1052992 NC_000014.9 scf7180000172803 99.6 True fake: scaffold gap size wrong estimation (local) 95663115 95665801 1053260 1055834 NC_000014.9 scf7180000172803 95.59 True fake: scaffold gap size wrong estimation (local) 95666035 95672088 1056255 1062239 NC_000014.9 scf7180000172803 98.72 True fake: scaffold gap size wrong estimation (local) 95673607 95676475 1062597 1065463 NC_000014.9 scf7180000172803 99.26 True fake: scaffold gap size wrong estimation (local) 95676615 95679227 1065798 1068345 NC_000014.9 scf7180000172803 97.03 True relocation, scaffold gap is present, inconsistency = -17841993 77837257 77839925 1068368 1071040 NC_000014.9 scf7180000172803 99.55 True relocation, scaffold gap is present, inconsistency = -13452953 64386993 64389457 1071061 1073525 NC_000014.9 scf7180000172803 100.0 True fake: not a misassembly (possible transposable element) 95672064 95673648 1073580 1075164 NC_000014.9 scf7180000172803 99.81 True fake: not a misassembly (possible transposable element) 64389638 64390549 1075614 1076525 NC_000014.9 scf7180000172803 100.0 True local misassembly 64390894 64394622 1076526 1080254 NC_000014.9 scf7180000172803 99.14 True indel: indel (<= 5bp) 64394624 64396390 1080255 1082021 NC_000014.9 scf7180000172803 99.89 True fake: scaffold gap size wrong estimation (local) 64397518 64399465 1083042 1084988 NC_000014.9 scf7180000172803 99.79 True fake: not a misassembly (possible transposable element) 95688216 95689033 1085009 1085826 NC_000014.9 scf7180000172803 99.39 True fake: not a misassembly (possible transposable element) 64400272 64401254 1085887 1086869 NC_000014.9 scf7180000172803 99.6 True relocation, inconsistency = 31288974 95690229 95693986 1086870 1090629 NC_000014.9 scf7180000172803 99.81 True fake: not a misassembly (possible transposable element) 34806511 34807960 1092109 1090660 NC_000014.9 scf7180000172803 99.93 True fake: not a misassembly (possible transposable element) 95694088 95695611 1092175 1093698 NC_000014.9 scf7180000172803 99.8 True local misassembly 95695799 95697170 1093699 1095070 NC_000014.9 scf7180000172803 98.47 True fake: scaffold gap size wrong estimation (local) 95697171 95698775 1095161 1096765 NC_000014.9 scf7180000172803 99.94 True local misassembly 95698987 95701333 1096766 1099112 NC_000014.9 scf7180000172803 99.11 True fake: scaffold gap size wrong estimation (local) 95701514 95706800 1099253 1104564 NC_000014.9 scf7180000172803 99.91 True fake: scaffold gap size wrong estimation (local) 95707044 95707986 1104810 1105752 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 95708509 95711211 1106247 1108949 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 95711427 95726401 1109111 1123929 NC_000014.9 scf7180000172803 98.91 True fake: scaffold gap size wrong estimation (local) 95726580 95729879 1124030 1127325 NC_000014.9 scf7180000172803 99.79 True fake: scaffold gap size wrong estimation (local) 95729788 95730956 1127903 1129071 NC_000014.9 scf7180000172803 100.0 True local misassembly 95731189 95734370 1129072 1132253 NC_000014.9 scf7180000172803 99.37 True fake: scaffold gap size wrong estimation (local) 95734826 95737159 1132648 1134981 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 95737434 95753518 1135212 1151286 NC_000014.9 scf7180000172803 99.91 True fake: scaffold gap size wrong estimation (local) 95753717 95762244 1151402 1159879 NC_000014.9 scf7180000172803 98.89 True fake: scaffold gap size wrong estimation (local) 95763146 95772327 1161279 1170503 NC_000014.9 scf7180000172803 99.8 True fake: scaffold gap size wrong estimation (local) 95772588 95796678 1170814 1194817 NC_000014.9 scf7180000172803 99.38 True fake: scaffold gap size wrong estimation (local) 95796741 95823905 1195176 1222441 NC_000014.9 scf7180000172803 99.06 True fake: scaffold gap size wrong estimation (local) 95824124 95836562 1222548 1234990 NC_000014.9 scf7180000172803 99.84 True fake: scaffold gap size wrong estimation (local) 95837421 95852108 1235760 1250904 NC_000014.9 scf7180000172803 96.73 True fake: scaffold gap size wrong estimation (local) 95852273 95854050 1251082 1252859 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 95854141 95871938 1252982 1270798 NC_000014.9 scf7180000172803 99.93 True fake: scaffold gap size wrong estimation (local) 95872189 95909299 1270984 1308104 NC_000014.9 scf7180000172803 99.95 True fake: scaffold gap size wrong estimation (local) 95909507 95912821 1308245 1311559 NC_000014.9 scf7180000172803 99.76 True fake: scaffold gap size wrong estimation (local) 95913394 95929944 1312092 1328313 NC_000014.9 scf7180000172803 97.81 True fake: scaffold gap size wrong estimation (local) 95930212 95947885 1328575 1346339 NC_000014.9 scf7180000172803 99.35 True fake: scaffold gap size wrong estimation (local) 95948039 95950768 1346695 1349337 NC_000014.9 scf7180000172803 95.33 True fake: scaffold gap size wrong estimation (local) 95951075 95971121 1349624 1369809 NC_000014.9 scf7180000172803 98.37 True fake: scaffold gap size wrong estimation (local) 95971378 95974408 1370020 1373073 NC_000014.9 scf7180000172803 99.24 True fake: scaffold gap size wrong estimation (local) 95975209 95976430 1374286 1375507 NC_000014.9 scf7180000172803 98.77 True local misassembly 95977499 96003855 1376910 1403779 NC_000014.9 scf7180000172803 97.55 True indel: indel (<= 5bp) 96004086 96005247 1404007 1405168 NC_000014.9 scf7180000172803 99.91 True fake: scaffold gap size wrong estimation (local) 96008084 96047970 1407972 1447782 NC_000014.9 scf7180000172803 99.65 True fake: scaffold gap size wrong estimation (local) 96048113 96048708 1448054 1448649 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 96049643 96063496 1449372 1463233 NC_000014.9 scf7180000172803 99.81 True fake: scaffold gap size wrong estimation (local) 96063573 96073592 1463329 1473156 NC_000014.9 scf7180000172803 97.86 True fake: scaffold gap size wrong estimation (local) 96074144 96090343 1473620 1489827 NC_000014.9 scf7180000172803 99.88 True fake: scaffold gap size wrong estimation (local) 96090416 96101641 1489899 1501161 NC_000014.9 scf7180000172803 99.49 True fake: scaffold gap size wrong estimation (local) 96101855 96111886 1501329 1511334 NC_000014.9 scf7180000172803 99.72 True fake: scaffold gap size wrong estimation (local) 96112137 96134848 1511541 1534170 NC_000014.9 scf7180000172803 99.22 True fake: scaffold gap size wrong estimation (local) 96135109 96152763 1534405 1552061 NC_000014.9 scf7180000172803 99.48 True fake: scaffold gap size wrong estimation (local) 96153547 96155930 1552851 1555155 NC_000014.9 scf7180000172803 96.35 True fake: scaffold gap size wrong estimation (local) 96155982 96159158 1555304 1558379 NC_000014.9 scf7180000172803 95.27 True indel: indel (<= 5bp) 96159278 96168105 1558500 1567262 NC_000014.9 scf7180000172803 99.16 True fake: scaffold gap size wrong estimation (local) 96168201 96171983 1567435 1571145 NC_000014.9 scf7180000172803 97.76 True fake: not a misassembly (possible transposable element) 95017613 95018709 1571146 1572242 NC_000014.9 scf7180000172803 99.91 True fake: not a misassembly (possible transposable element) 96172504 96188074 1572263 1587843 NC_000014.9 scf7180000172803 99.73 True fake: scaffold gap size wrong estimation (local) 96188293 96190572 1587994 1590273 NC_000014.9 scf7180000172803 99.91 True fake: scaffold gap size wrong estimation (local) 96190573 96191113 1590541 1591081 NC_000014.9 scf7180000172803 100.0 True indel: indel (<= 5bp) 96191262 96199923 1591231 1600281 NC_000014.9 scf7180000172803 96.0 True fake: scaffold gap size wrong estimation (local) 96200510 96218717 1600964 1618896 NC_000014.9 scf7180000172803 98.36 True fake: scaffold gap size wrong estimation (local) 96219240 96226418 1619391 1626569 NC_000014.9 scf7180000172803 99.92 True fake: scaffold gap size wrong estimation (local) 96226640 96229829 1626741 1629930 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 96230891 96235095 1630957 1635161 NC_000014.9 scf7180000172803 99.95 True fake: scaffold gap size wrong estimation (local) 96235358 96254270 1635351 1654188 NC_000014.9 scf7180000172803 99.53 True fake: scaffold gap size wrong estimation (local) 96254514 96258656 1654379 1658521 NC_000014.9 scf7180000172803 99.98 True fake: scaffold gap size wrong estimation (local) 96258765 96260051 1658602 1659888 NC_000014.9 scf7180000172803 99.92 True fake: scaffold gap size wrong estimation (local) 96260293 96271974 1660069 1671816 NC_000014.9 scf7180000172803 99.5 True fake: scaffold gap size wrong estimation (local) 96272098 96287025 1671941 1686856 NC_000014.9 scf7180000172803 99.68 True fake: scaffold gap size wrong estimation (local) 96287262 96295990 1687021 1695748 NC_000014.9 scf7180000172803 99.89 True fake: scaffold gap size wrong estimation (local) 96296762 96297437 1696462 1697137 NC_000014.9 scf7180000172803 100.0 True fake: scaffold gap size wrong estimation (local) 96297669 96308162 1697486 1707950 NC_000014.9 scf7180000172803 99.64 True fake: scaffold gap size wrong estimation (local) 96308575 96314701 1708319 1714445 NC_000014.9 scf7180000172803 99.85 True fake: scaffold gap size wrong estimation (local) 96314972 96330508 1714623 1730062 NC_000014.9 scf7180000172803 99.17 True fake: scaffold gap size wrong estimation (local) 96330742 96342495 1730649 1742562 NC_000014.9 scf7180000172803 98.42 True fake: scaffold gap size wrong estimation (local) 96342617 96351500 1742662 1751457 NC_000014.9 scf7180000172803 98.9 True fake: scaffold gap size wrong estimation (local) 96351736 96365586 1751546 1765491 NC_000014.9 scf7180000172803 99.8 True fake: scaffold gap size wrong estimation (local) 96365804 96368200 1765681 1768077 NC_000014.9 scf7180000172803 99.96 True fake: scaffold gap size wrong estimation (local) 96368431 96372994 1768256 1772772 NC_000014.9 scf7180000172803 98.87 True fake: scaffold gap size wrong estimation (local) 96373232 96375395 1773014 1775176 NC_000014.9 scf7180000172803 99.95 True fake: scaffold gap size wrong estimation (local) 96375660 96383350 1775427 1783159 NC_000014.9 scf7180000172803 99.74 True relocation, inconsistency = 14127791 82245860 82247868 1785168 1783160 NC_000014.9 scf7180000172803 99.95 True CONTIG scf7180000172803 1785168 misassembled 96673050 96700362 28072 633 NC_000014.9 scf7180000172804 99.45 True fake: scaffold gap size wrong estimation (local) 96642613 96672682 59584 28338 NC_000014.9 scf7180000172804 95.24 True fake: scaffold gap size wrong estimation (local) 96641196 96642379 60903 59720 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 96639510 96641098 62593 61005 NC_000014.9 scf7180000172804 99.81 True fake: scaffold gap size wrong estimation (local) 96630956 96639444 71569 62987 NC_000014.9 scf7180000172804 97.43 True fake: scaffold gap size wrong estimation (local) 96613484 96630681 89038 71834 NC_000014.9 scf7180000172804 99.8 True fake: scaffold gap size wrong estimation (local) 96612153 96613350 90345 89140 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 96594339 96611809 108753 90720 NC_000014.9 scf7180000172804 95.93 True fake: scaffold gap size wrong estimation (local) 96562100 96594111 141057 108964 NC_000014.9 scf7180000172804 99.61 True fake: scaffold gap size wrong estimation (local) 96559578 96561858 143492 141212 NC_000014.9 scf7180000172804 99.96 True fake: scaffold gap size wrong estimation (local) 96559028 96559577 144062 143513 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 96558152 96559027 144970 144095 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 96557571 96558151 145578 144998 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 96553736 96557070 150781 147447 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 96549463 96553520 154966 150909 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 96541111 96549274 163682 155519 NC_000014.9 scf7180000172804 99.95 True fake: not a misassembly (possible transposable element) 68918691 68920622 163683 165614 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 96518976 96540980 187651 165635 NC_000014.9 scf7180000172804 99.0 True fake: scaffold gap size wrong estimation (local) 96507554 96518455 199096 188165 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 96500840 96507280 205724 199371 NC_000014.9 scf7180000172804 98.55 True fake: scaffold gap size wrong estimation (local) 96498670 96500661 207904 205889 NC_000014.9 scf7180000172804 99.75 True fake: scaffold gap size wrong estimation (local) 96496086 96498414 210512 208184 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 96495061 96495824 211554 210791 NC_000014.9 scf7180000172804 99.87 True fake: not a misassembly (possible transposable element) 85939426 85939959 212087 211555 NC_000014.9 scf7180000172804 98.99 True fake: not a misassembly (possible transposable element) 96493189 96493830 213453 212812 NC_000014.9 scf7180000172804 100.0 True relocation, scaffold gap is present, inconsistency = 10555219 85935991 85937398 215431 214025 NC_000014.9 scf7180000172804 99.72 True fake: scaffold gap size wrong estimation (local) 85933033 85935133 218408 216308 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 85929359 85932749 222345 218954 NC_000014.9 scf7180000172804 99.59 True indel: indel (<= 5bp) 85927903 85929002 223797 222698 NC_000014.9 scf7180000172804 99.73 True fake: scaffold gap size wrong estimation (local) 85920240 85927760 231350 223928 NC_000014.9 scf7180000172804 98.6 True fake: scaffold gap size wrong estimation (local) 85912708 85920238 239059 231514 NC_000014.9 scf7180000172804 97.27 True fake: scaffold gap size wrong estimation (local) 85911389 85912578 240319 239132 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 85908008 85910861 243450 240597 NC_000014.9 scf7180000172804 99.96 True fake: scaffold gap size wrong estimation (local) 85905460 85907131 246021 244324 NC_000014.9 scf7180000172804 99.58 True fake: scaffold gap size wrong estimation (local) 85903853 85904407 247768 247214 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 85891678 85902120 259724 249322 NC_000014.9 scf7180000172804 99.62 True fake: scaffold gap size wrong estimation (local) 85876804 85885652 275231 266362 NC_000014.9 scf7180000172804 99.97 True fake: scaffold gap size wrong estimation (local) 85852252 85876531 299841 275442 NC_000014.9 scf7180000172804 99.45 True fake: not a misassembly (possible transposable element) 55318440 55319755 301189 299874 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 85850447 85852163 302980 301264 NC_000014.9 scf7180000172804 99.88 True fake: not a misassembly (possible transposable element) 55316567 55317430 303845 302981 NC_000014.9 scf7180000172804 99.88 True fake: not a misassembly (possible transposable element) 85848735 85850250 305381 303866 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 85834740 85846314 318341 307038 NC_000014.9 scf7180000172804 97.61 True fake: scaffold gap size wrong estimation (local) 85830583 85834491 322460 318552 NC_000014.9 scf7180000172804 99.92 True fake: scaffold gap size wrong estimation (local) 85827103 85828521 325685 324288 NC_000014.9 scf7180000172804 98.03 True fake: scaffold gap size wrong estimation (local) 85821558 85826835 331263 326016 NC_000014.9 scf7180000172804 99.41 True fake: scaffold gap size wrong estimation (local) 85819905 85821319 332847 331433 NC_000014.9 scf7180000172804 99.58 True fake: scaffold gap size wrong estimation (local) 85808634 85819299 344077 333404 NC_000014.9 scf7180000172804 99.69 True fake: scaffold gap size wrong estimation (local) 85800830 85808161 351994 344773 NC_000014.9 scf7180000172804 98.16 True fake: scaffold gap size wrong estimation (local) 85791840 85800301 360919 352450 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 85768249 85791607 384339 361105 NC_000014.9 scf7180000172804 99.27 True fake: scaffold gap size wrong estimation (local) 85764335 85768178 388274 384424 NC_000014.9 scf7180000172804 99.79 True fake: not a misassembly (possible transposable element) 31172490 31174346 388328 390184 NC_000014.9 scf7180000172804 99.89 True fake: not a misassembly (possible transposable element) 85762504 85764140 391888 390252 NC_000014.9 scf7180000172804 99.82 True fake: not a misassembly (possible transposable element) 31174347 31175640 391907 393200 NC_000014.9 scf7180000172804 96.75 True fake: not a misassembly (possible transposable element) 85761706 85762503 394036 393239 NC_000014.9 scf7180000172804 97.74 True fake: scaffold gap size wrong estimation (local) 85759841 85761705 396869 395005 NC_000014.9 scf7180000172804 99.36 True fake: scaffold gap size wrong estimation (local) 85758582 85759776 398574 397380 NC_000014.9 scf7180000172804 99.92 True fake: scaffold gap size wrong estimation (local) 85757294 85758581 401965 400678 NC_000014.9 scf7180000172804 99.92 True indel: indel (<= 5bp) 85747443 85757135 411817 402125 NC_000014.9 scf7180000172804 99.74 True fake: not a misassembly (possible transposable element) 31180652 31181453 413602 414403 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 85736519 85747610 426014 414454 NC_000014.9 scf7180000172804 95.74 True fake: not a misassembly (possible transposable element) 92047695 92048254 426574 426015 NC_000014.9 scf7180000172804 99.24 True fake: not a misassembly (possible transposable element) 85733789 85734413 429479 428855 NC_000014.9 scf7180000172804 96.01 True relocation, scaffold gap is present, inconsistency = -6311319 92041955 92042696 432632 431891 NC_000014.9 scf7180000172804 98.92 True fake: scaffold gap size wrong estimation (local) 92037780 92041219 436942 433503 NC_000014.9 scf7180000172804 99.94 True fake: scaffold gap size wrong estimation (local) 92035650 92037620 439029 437059 NC_000014.9 scf7180000172804 99.95 True fake: scaffold gap size wrong estimation (local) 92032831 92035079 441742 439500 NC_000014.9 scf7180000172804 99.55 True fake: scaffold gap size wrong estimation (local) 92031379 92032579 443128 441928 NC_000014.9 scf7180000172804 99.75 True fake: scaffold gap size wrong estimation (local) 92030631 92031231 444050 443450 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 92025885 92029942 448581 444602 NC_000014.9 scf7180000172804 97.3 True fake: scaffold gap size wrong estimation (local) 92024355 92025659 450009 448705 NC_000014.9 scf7180000172804 98.47 True fake: scaffold gap size wrong estimation (local) 92021390 92023872 453012 450414 NC_000014.9 scf7180000172804 96.28 True fake: scaffold gap size wrong estimation (local) 92020297 92020816 453965 453446 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 92018989 92020139 455383 454233 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 92015613 92018088 458638 456163 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 92011502 92014931 462705 459280 NC_000014.9 scf7180000172804 99.79 True fake: scaffold gap size wrong estimation (local) 92007221 92011273 466916 462832 NC_000014.9 scf7180000172804 99.8 True fake: scaffold gap size wrong estimation (local) 92002825 92006682 471212 467355 NC_000014.9 scf7180000172804 99.97 True fake: scaffold gap size wrong estimation (local) 92001003 92002685 472995 471313 NC_000014.9 scf7180000172804 99.94 True fake: scaffold gap size wrong estimation (local) 91994515 92000880 479543 473085 NC_000014.9 scf7180000172804 99.78 True fake: scaffold gap size wrong estimation (local) 91993483 91994275 480420 479628 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91984552 91992680 489478 481325 NC_000014.9 scf7180000172804 99.98 True fake: scaffold gap size wrong estimation (local) 91981598 91984332 492437 489703 NC_000014.9 scf7180000172804 99.96 True fake: scaffold gap size wrong estimation (local) 91970368 91981000 503612 492967 NC_000014.9 scf7180000172804 99.16 True fake: scaffold gap size wrong estimation (local) 91969028 91970179 504970 503819 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 32774742 32775512 505066 505836 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 91967347 91969049 507539 505837 NC_000014.9 scf7180000172804 98.71 True local misassembly 91965675 91967148 509013 507540 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91961437 91965579 513205 509137 NC_000014.9 scf7180000172804 98.1 True fake: scaffold gap size wrong estimation (local) 91959599 91961184 515100 513513 NC_000014.9 scf7180000172804 99.87 True fake: scaffold gap size wrong estimation (local) 91956211 91959071 518289 515409 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 91954849 91955984 519599 518464 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91952186 91954622 522191 519840 NC_000014.9 scf7180000172804 96.36 True fake: scaffold gap size wrong estimation (local) 91945225 91951957 529184 522533 NC_000014.9 scf7180000172804 98.22 True fake: scaffold gap size wrong estimation (local) 91939524 91945004 534839 529359 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 91938437 91939355 535895 534977 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91933543 91938200 540725 536099 NC_000014.9 scf7180000172804 99.12 True fake: scaffold gap size wrong estimation (local) 91917620 91933379 556502 540860 NC_000014.9 scf7180000172804 99.15 True fake: not a misassembly (possible transposable element) 84347068 84347858 557645 556855 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 91915707 91917318 559280 557696 NC_000014.9 scf7180000172804 98.24 True fake: scaffold gap size wrong estimation (local) 91912804 91914139 562015 560680 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91911805 91912447 563268 562626 NC_000014.9 scf7180000172804 100.0 True indel: indel (<= 5bp) 91911238 91911803 563834 563269 NC_000014.9 scf7180000172804 96.29 True local misassembly 91909192 91910988 565675 563879 NC_000014.9 scf7180000172804 99.78 True fake: scaffold gap size wrong estimation (local) 91905878 91909031 568980 565819 NC_000014.9 scf7180000172804 99.81 True fake: scaffold gap size wrong estimation (local) 91897923 91905597 576823 569256 NC_000014.9 scf7180000172804 98.33 True fake: scaffold gap size wrong estimation (local) 91896458 91897791 578423 577090 NC_000014.9 scf7180000172804 100.0 True indel: indel (<= 5bp) 91895798 91896451 579081 578428 NC_000014.9 scf7180000172804 96.64 True fake: scaffold gap size wrong estimation (local) 91894497 91895543 580387 579341 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 91888624 91894142 586224 580706 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 91883796 91888048 590966 586714 NC_000014.9 scf7180000172804 99.86 True local misassembly 91883822 91885501 592646 590967 NC_000014.9 scf7180000172804 99.77 True local misassembly 91864954 91885527 613155 592647 NC_000014.9 scf7180000172804 99.15 True fake: scaffold gap size wrong estimation (local) 91862352 91864782 615768 613321 NC_000014.9 scf7180000172804 99.92 True fake: scaffold gap size wrong estimation (local) 91852349 91862101 625747 615988 NC_000014.9 scf7180000172804 98.07 True fake: scaffold gap size wrong estimation (local) 91850072 91850581 626505 625996 NC_000014.9 scf7180000172804 99.61 True local misassembly 91850872 91852181 627835 626526 NC_000014.9 scf7180000172804 99.47 True fake: scaffold gap size wrong estimation (local) 91847246 91849854 630734 628126 NC_000014.9 scf7180000172804 99.89 True indel: stretch of mismatches 91844775 91847028 633197 630952 NC_000014.9 scf7180000172804 99.56 True fake: scaffold gap size wrong estimation (local) 91832346 91844569 645650 633369 NC_000014.9 scf7180000172804 99.69 True fake: scaffold gap size wrong estimation (local) 91827420 91832254 650562 645727 NC_000014.9 scf7180000172804 99.9 True fake: not a misassembly (possible transposable element) 52397328 52397990 650563 651225 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 91825251 91827452 653450 651248 NC_000014.9 scf7180000172804 99.73 True fake: scaffold gap size wrong estimation (local) 91823537 91825017 655048 653568 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 91803554 91822732 674959 655768 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 91792123 91803441 686363 675075 NC_000014.9 scf7180000172804 99.54 True fake: scaffold gap size wrong estimation (local) 91789593 91791857 688839 686608 NC_000014.9 scf7180000172804 98.49 True fake: scaffold gap size wrong estimation (local) 91779665 91789349 698997 689314 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 91771060 91778983 707562 699623 NC_000014.9 scf7180000172804 99.8 True fake: scaffold gap size wrong estimation (local) 91767133 91770822 711418 707682 NC_000014.9 scf7180000172804 99.81 True fake: scaffold gap size wrong estimation (local) 91761673 91766945 716855 711560 NC_000014.9 scf7180000172804 99.47 True fake: scaffold gap size wrong estimation (local) 91749384 91760907 729051 717531 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 91745124 91749206 733427 729339 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 91740069 91744897 738442 733617 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 91737545 91739430 741118 739233 NC_000014.9 scf7180000172804 99.95 True fake: scaffold gap size wrong estimation (local) 91729193 91737450 749432 741354 NC_000014.9 scf7180000172804 97.28 True fake: scaffold gap size wrong estimation (local) 91721854 91729084 756774 749527 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 91715561 91721626 763190 757025 NC_000014.9 scf7180000172804 98.6 True fake: scaffold gap size wrong estimation (local) 91714841 91715381 763846 763306 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 91709698 91714567 768826 763995 NC_000014.9 scf7180000172804 98.71 True fake: scaffold gap size wrong estimation (local) 91707880 91709436 770654 769098 NC_000014.9 scf7180000172804 99.94 True fake: scaffold gap size wrong estimation (local) 91699723 91707577 778706 770842 NC_000014.9 scf7180000172804 99.48 True fake: not a misassembly (possible transposable element) 98086816 98088045 778884 780113 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 91684839 91699466 795000 780143 NC_000014.9 scf7180000172804 95.94 True fake: scaffold gap size wrong estimation (local) 91677116 91684617 802600 795100 NC_000014.9 scf7180000172804 99.48 True fake: scaffold gap size wrong estimation (local) 91673883 91676997 805839 802726 NC_000014.9 scf7180000172804 99.58 True fake: scaffold gap size wrong estimation (local) 91672002 91673692 807710 806017 NC_000014.9 scf7180000172804 99.76 True fake: scaffold gap size wrong estimation (local) 91670823 91671397 809288 808714 NC_000014.9 scf7180000172804 96.52 True local misassembly 91669356 91670686 810619 809289 NC_000014.9 scf7180000172804 99.77 True fake: scaffold gap size wrong estimation (local) 91665752 91668390 814286 811648 NC_000014.9 scf7180000172804 99.05 True indel: indel (> 5bp) 91665108 91665744 814923 814287 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 91664515 91665107 815773 815181 NC_000014.9 scf7180000172804 99.33 True fake: scaffold gap size wrong estimation (local) 91663663 91664260 816450 815853 NC_000014.9 scf7180000172804 99.67 True fake: scaffold gap size wrong estimation (local) 91652705 91663426 827813 816595 NC_000014.9 scf7180000172804 97.69 True fake: scaffold gap size wrong estimation (local) 91648850 91652507 831581 827926 NC_000014.9 scf7180000172804 99.18 True fake: scaffold gap size wrong estimation (local) 91646206 91647038 833791 832959 NC_000014.9 scf7180000172804 99.64 True fake: scaffold gap size wrong estimation (local) 91634902 91640243 848834 843493 NC_000014.9 scf7180000172804 99.78 True fake: not a misassembly (possible transposable element) 46879384 46880068 848835 849519 NC_000014.9 scf7180000172804 99.86 True fake: not a misassembly (possible transposable element) 91631642 91634677 853817 850780 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 91624650 91631415 860706 853940 NC_000014.9 scf7180000172804 99.67 True fake: scaffold gap size wrong estimation (local) 91623166 91624376 862139 860929 NC_000014.9 scf7180000172804 99.5 True fake: scaffold gap size wrong estimation (local) 91616915 91622899 868325 862402 NC_000014.9 scf7180000172804 98.39 True fake: scaffold gap size wrong estimation (local) 91616137 91616733 869221 868625 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 91611513 91615883 873708 869353 NC_000014.9 scf7180000172804 99.31 True fake: scaffold gap size wrong estimation (local) 91606161 91611354 879073 873825 NC_000014.9 scf7180000172804 99.0 True fake: scaffold gap size wrong estimation (local) 91599546 91605955 885664 879259 NC_000014.9 scf7180000172804 99.73 True fake: scaffold gap size wrong estimation (local) 91598859 91599367 886258 885750 NC_000014.9 scf7180000172804 99.8 True fake: scaffold gap size wrong estimation (local) 91597133 91598657 888099 886575 NC_000014.9 scf7180000172804 99.61 True fake: scaffold gap size wrong estimation (local) 91595307 91596107 889995 889195 NC_000014.9 scf7180000172804 96.63 True local misassembly 91594538 91595195 890653 889996 NC_000014.9 scf7180000172804 99.54 True fake: scaffold gap size wrong estimation (local) 91590922 91594124 894482 891283 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 91583256 91590642 902076 894781 NC_000014.9 scf7180000172804 98.42 True fake: scaffold gap size wrong estimation (local) 91578697 91583161 906639 902175 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 91572571 91578117 912694 907193 NC_000014.9 scf7180000172804 97.19 True fake: scaffold gap size wrong estimation (local) 91570805 91572177 914314 912942 NC_000014.9 scf7180000172804 99.34 True fake: scaffold gap size wrong estimation (local) 91569964 91570804 915447 914607 NC_000014.9 scf7180000172804 99.76 True fake: scaffold gap size wrong estimation (local) 91568083 91569963 917552 915672 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 91566345 91567448 919277 918174 NC_000014.9 scf7180000172804 97.83 True fake: not a misassembly (possible transposable element) 59664356 59665341 920680 919695 NC_000014.9 scf7180000172804 100.0 True fake: not a misassembly (possible transposable element) 91564784 91565860 921777 920701 NC_000014.9 scf7180000172804 99.72 True fake: scaffold gap size wrong estimation (local) 91561075 91561887 924889 924077 NC_000014.9 scf7180000172804 99.75 True fake: scaffold gap size wrong estimation (local) 91558402 91559120 927394 926676 NC_000014.9 scf7180000172804 99.86 True local misassembly 91559089 91560039 928592 927642 NC_000014.9 scf7180000172804 99.79 True relocation, scaffold gap is present, inconsistency = 68879087 22677580 22678457 931014 930137 NC_000014.9 scf7180000172804 100.0 True relocation, scaffold gap is present, inconsistency = -36979786 59655620 59657154 932760 931226 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 59654431 59655619 934247 933059 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 59651568 59654430 938509 935647 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 59650222 59651567 939910 938565 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 59643411 59649791 946636 940194 NC_000014.9 scf7180000172804 98.94 True fake: scaffold gap size wrong estimation (local) 59640596 59643313 949433 946732 NC_000014.9 scf7180000172804 99.26 True fake: scaffold gap size wrong estimation (local) 59638060 59639175 951937 950822 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 59609269 59637521 980765 952479 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 59595099 59609085 994913 980923 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 59583238 59594911 1006646 995051 NC_000014.9 scf7180000172804 99.09 True fake: scaffold gap size wrong estimation (local) 59581879 59583156 1008023 1006746 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 59575749 59581592 1014021 1008261 NC_000014.9 scf7180000172804 98.01 True fake: scaffold gap size wrong estimation (local) 59570962 59575525 1018922 1014180 NC_000014.9 scf7180000172804 96.81 True fake: scaffold gap size wrong estimation (local) 59565670 59570752 1024178 1019096 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 59557589 59565447 1032241 1024381 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 59549679 59552203 1041177 1038653 NC_000014.9 scf7180000172804 99.56 True fake: scaffold gap size wrong estimation (local) 59533993 59549555 1056714 1041297 NC_000014.9 scf7180000172804 98.8 True fake: scaffold gap size wrong estimation (local) 59530397 59533715 1060298 1056980 NC_000014.9 scf7180000172804 99.97 True fake: scaffold gap size wrong estimation (local) 59523997 59530230 1066625 1060396 NC_000014.9 scf7180000172804 99.74 True fake: scaffold gap size wrong estimation (local) 59519128 59523759 1071444 1066813 NC_000014.9 scf7180000172804 99.96 True fake: scaffold gap size wrong estimation (local) 59508585 59514601 1081671 1075533 NC_000014.9 scf7180000172804 97.85 True fake: scaffold gap size wrong estimation (local) 59502910 59508332 1087478 1082131 NC_000014.9 scf7180000172804 98.37 True fake: scaffold gap size wrong estimation (local) 59499186 59502751 1091199 1087634 NC_000014.9 scf7180000172804 99.92 True fake: scaffold gap size wrong estimation (local) 59496119 59499023 1094229 1091311 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 59493024 59496007 1097507 1094516 NC_000014.9 scf7180000172804 99.63 True fake: scaffold gap size wrong estimation (local) 59487135 59492808 1103379 1097706 NC_000014.9 scf7180000172804 99.93 True indel: indel (<= 5bp) 59469587 59487045 1121143 1103466 NC_000014.9 scf7180000172804 97.65 True fake: scaffold gap size wrong estimation (local) 59449384 59469300 1141475 1121375 NC_000014.9 scf7180000172804 97.87 True fake: scaffold gap size wrong estimation (local) 59446820 59448022 1143939 1142737 NC_000014.9 scf7180000172804 99.67 True fake: scaffold gap size wrong estimation (local) 59444840 59445606 1145658 1144892 NC_000014.9 scf7180000172804 99.74 True fake: scaffold gap size wrong estimation (local) 59433868 59444562 1157225 1146511 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 59433123 59433662 1157981 1157442 NC_000014.9 scf7180000172804 96.11 True fake: scaffold gap size wrong estimation (local) 59430782 59432212 1160203 1158773 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 59429573 59430571 1161399 1160401 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 59426066 59429293 1164932 1161626 NC_000014.9 scf7180000172804 99.75 True fake: scaffold gap size wrong estimation (local) 59419683 59425954 1171230 1164960 NC_000014.9 scf7180000172804 99.81 True fake: scaffold gap size wrong estimation (local) 59417361 59418944 1173347 1171760 NC_000014.9 scf7180000172804 99.74 True fake: scaffold gap size wrong estimation (local) 59415523 59417203 1175189 1173509 NC_000014.9 scf7180000172804 99.88 True relocation, scaffold gap is present, inconsistency = 28228313 31183830 31184660 1177739 1178569 NC_000014.9 scf7180000172804 99.88 True fake: scaffold gap size wrong estimation (local) 31185690 31186692 1178620 1179622 NC_000014.9 scf7180000172804 99.8 True fake: scaffold gap size wrong estimation (local) 31187054 31187948 1179822 1180716 NC_000014.9 scf7180000172804 99.78 True fake: scaffold gap size wrong estimation (local) 31188451 31190723 1181553 1183887 NC_000014.9 scf7180000172804 98.18 True fake: scaffold gap size wrong estimation (local) 31192902 31193671 1185961 1186730 NC_000014.9 scf7180000172804 97.4 True fake: scaffold gap size wrong estimation (local) 31193905 31199364 1187106 1192537 NC_000014.9 scf7180000172804 98.71 True fake: scaffold gap size wrong estimation (local) 31199734 31200476 1192940 1193682 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31202219 31203898 1195547 1197159 NC_000014.9 scf7180000172804 95.78 True fake: scaffold gap size wrong estimation (local) 31204072 31211488 1197301 1204792 NC_000014.9 scf7180000172804 99.65 True fake: scaffold gap size wrong estimation (local) 31211749 31213883 1204934 1207181 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 31215410 31216014 1208780 1209384 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 31216755 31217372 1210036 1210653 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31218401 31218966 1211549 1212114 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31219179 31220134 1212551 1213506 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31220342 31221091 1214215 1214964 NC_000014.9 scf7180000172804 99.87 True fake: scaffold gap size wrong estimation (local) 31222716 31224965 1216477 1218726 NC_000014.9 scf7180000172804 99.69 True fake: scaffold gap size wrong estimation (local) 31224966 31225466 1218883 1219383 NC_000014.9 scf7180000172804 98.8 True fake: scaffold gap size wrong estimation (local) 31228237 31229292 1221919 1222974 NC_000014.9 scf7180000172804 98.01 True indel: indel (> 5bp) 31229293 31230349 1222981 1224037 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 31230557 31231998 1224254 1225683 NC_000014.9 scf7180000172804 98.95 True fake: scaffold gap size wrong estimation (local) 31232056 31232568 1225925 1226437 NC_000014.9 scf7180000172804 99.81 True fake: scaffold gap size wrong estimation (local) 31232820 31234901 1226500 1228641 NC_000014.9 scf7180000172804 98.21 True fake: scaffold gap size wrong estimation (local) 31235109 31236472 1228882 1230245 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31236913 31238350 1231122 1232563 NC_000014.9 scf7180000172804 99.45 True fake: scaffold gap size wrong estimation (local) 31238491 31240598 1232770 1234834 NC_000014.9 scf7180000172804 97.8 True fake: scaffold gap size wrong estimation (local) 31240800 31243252 1235052 1237504 NC_000014.9 scf7180000172804 99.92 True fake: scaffold gap size wrong estimation (local) 31251109 31252552 1242666 1244109 NC_000014.9 scf7180000172804 99.79 True fake: scaffold gap size wrong estimation (local) 31252818 31253497 1244779 1245458 NC_000014.9 scf7180000172804 99.85 True relocation, scaffold gap is present, inconsistency = 19636251 50891435 50893435 1249145 1247145 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 50889564 50891250 1252034 1250348 NC_000014.9 scf7180000172804 99.53 True indel: indel (> 5bp) 50888397 50889481 1253127 1252043 NC_000014.9 scf7180000172804 95.85 True local misassembly 50887225 50888217 1254120 1253128 NC_000014.9 scf7180000172804 99.7 True relocation, scaffold gap is present, inconsistency = 19626808 31256396 31259159 1255378 1258141 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 31259673 31263108 1258640 1262086 NC_000014.9 scf7180000172804 99.51 True fake: scaffold gap size wrong estimation (local) 31263313 31264800 1262306 1263793 NC_000014.9 scf7180000172804 99.87 True fake: scaffold gap size wrong estimation (local) 31265586 31266875 1266276 1267565 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 31267598 31272209 1268331 1272963 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 31272264 31273129 1273038 1273903 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31273907 31274905 1274684 1275703 NC_000014.9 scf7180000172804 98.21 True fake: scaffold gap size wrong estimation (local) 31275573 31276204 1276304 1276936 NC_000014.9 scf7180000172804 99.53 True fake: scaffold gap size wrong estimation (local) 31276938 31277897 1277743 1278702 NC_000014.9 scf7180000172804 97.92 True fake: scaffold gap size wrong estimation (local) 31280652 31282315 1282060 1283723 NC_000014.9 scf7180000172804 99.94 True fake: scaffold gap size wrong estimation (local) 31282775 31286341 1284292 1287909 NC_000014.9 scf7180000172804 96.92 True fake: scaffold gap size wrong estimation (local) 31286553 31287656 1288092 1289195 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 31287657 31288508 1289257 1290108 NC_000014.9 scf7180000172804 98.12 True fake: scaffold gap size wrong estimation (local) 31288509 31289399 1290315 1291205 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31290394 31292608 1292208 1294422 NC_000014.9 scf7180000172804 99.95 True fake: scaffold gap size wrong estimation (local) 31292815 31299470 1294620 1301257 NC_000014.9 scf7180000172804 99.58 True fake: scaffold gap size wrong estimation (local) 31299963 31301269 1301771 1303077 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31302013 31302901 1303443 1304331 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31303375 31304509 1305085 1306219 NC_000014.9 scf7180000172804 100.0 True local misassembly 31304658 31305332 1306220 1306894 NC_000014.9 scf7180000172804 97.04 True fake: scaffold gap size wrong estimation (local) 31307105 31308284 1308595 1309774 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31308833 31309853 1311994 1313014 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 31310572 31312417 1313795 1315620 NC_000014.9 scf7180000172804 98.81 True fake: scaffold gap size wrong estimation (local) 31312850 31314002 1316140 1317292 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31314466 31317319 1317684 1320537 NC_000014.9 scf7180000172804 99.96 True fake: scaffold gap size wrong estimation (local) 31317562 31318552 1320823 1321813 NC_000014.9 scf7180000172804 99.9 True fake: scaffold gap size wrong estimation (local) 31319429 31326689 1322555 1329835 NC_000014.9 scf7180000172804 99.65 True fake: scaffold gap size wrong estimation (local) 31327408 31328629 1330417 1331638 NC_000014.9 scf7180000172804 99.59 True fake: scaffold gap size wrong estimation (local) 31328904 31329835 1331972 1332903 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 31329960 31330558 1333117 1333715 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31331278 31332871 1334757 1336350 NC_000014.9 scf7180000172804 99.87 True fake: scaffold gap size wrong estimation (local) 31333878 31334780 1337330 1338258 NC_000014.9 scf7180000172804 98.9 True fake: scaffold gap size wrong estimation (local) 31334965 31335846 1338367 1339248 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 31336257 31339073 1339686 1342503 NC_000014.9 scf7180000172804 99.79 True fake: scaffold gap size wrong estimation (local) 31339460 31343105 1342875 1346521 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 31343362 31344273 1346716 1347627 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31344845 31348417 1348027 1351599 NC_000014.9 scf7180000172804 99.89 True fake: scaffold gap size wrong estimation (local) 31348502 31349161 1351876 1352535 NC_000014.9 scf7180000172804 99.7 True fake: scaffold gap size wrong estimation (local) 31349346 31350912 1352605 1354167 NC_000014.9 scf7180000172804 99.62 True fake: scaffold gap size wrong estimation (local) 31351406 31355317 1354705 1358488 NC_000014.9 scf7180000172804 96.27 True fake: scaffold gap size wrong estimation (local) 31355702 31363048 1358693 1365970 NC_000014.9 scf7180000172804 98.22 True fake: scaffold gap size wrong estimation (local) 31363240 31363952 1366176 1366888 NC_000014.9 scf7180000172804 99.86 True fake: scaffold gap size wrong estimation (local) 31363953 31365124 1367029 1368200 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 31366157 31370088 1369342 1373354 NC_000014.9 scf7180000172804 99.23 True indel: indel (<= 5bp) 31370206 31378533 1373470 1381633 NC_000014.9 scf7180000172804 97.33 True fake: scaffold gap size wrong estimation (local) 31379444 31380988 1382674 1384218 NC_000014.9 scf7180000172804 99.87 True fake: scaffold gap size wrong estimation (local) 31381770 31387582 1384938 1390723 NC_000014.9 scf7180000172804 99.43 True fake: scaffold gap size wrong estimation (local) 31387835 31394545 1390936 1397738 NC_000014.9 scf7180000172804 99.73 True fake: scaffold gap size wrong estimation (local) 31397677 31399621 1403194 1405138 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 31399707 31400856 1405370 1406519 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31401002 31406765 1406633 1412404 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 31407842 31408868 1413539 1414565 NC_000014.9 scf7180000172804 99.71 True fake: scaffold gap size wrong estimation (local) 31409273 31412020 1414619 1417708 NC_000014.9 scf7180000172804 99.64 True fake: scaffold gap size wrong estimation (local) 31412440 31417498 1418024 1423120 NC_000014.9 scf7180000172804 99.66 True fake: scaffold gap size wrong estimation (local) 31417752 31422472 1423366 1428210 NC_000014.9 scf7180000172804 97.96 True fake: scaffold gap size wrong estimation (local) 31422621 31425399 1428326 1431107 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 31425624 31427548 1431369 1433293 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 31427805 31432556 1433509 1438236 NC_000014.9 scf7180000172804 98.67 True fake: scaffold gap size wrong estimation (local) 31432877 31436711 1438475 1442308 NC_000014.9 scf7180000172804 99.82 True fake: scaffold gap size wrong estimation (local) 31438205 31440939 1443683 1446416 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 31441100 31443342 1446538 1448776 NC_000014.9 scf7180000172804 99.73 True fake: scaffold gap size wrong estimation (local) 31444047 31445250 1449414 1450617 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 31445462 31447585 1450753 1452936 NC_000014.9 scf7180000172804 97.51 True fake: scaffold gap size wrong estimation (local) 31447776 31448973 1453048 1454245 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31449102 31451164 1454335 1456397 NC_000014.9 scf7180000172804 99.71 True fake: scaffold gap size wrong estimation (local) 31451413 31452850 1456608 1458045 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 31452826 31455433 1458159 1460707 NC_000014.9 scf7180000172804 97.6 True fake: scaffold gap size wrong estimation (local) 31455770 31459841 1460986 1465027 NC_000014.9 scf7180000172804 99.23 True fake: scaffold gap size wrong estimation (local) 31460057 31463563 1465204 1468734 NC_000014.9 scf7180000172804 99.66 True fake: scaffold gap size wrong estimation (local) 31463742 31464400 1468943 1469601 NC_000014.9 scf7180000172804 99.85 True fake: scaffold gap size wrong estimation (local) 31464513 31468369 1469679 1473474 NC_000014.9 scf7180000172804 98.4 True fake: scaffold gap size wrong estimation (local) 31468632 31469315 1473709 1474392 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31469316 31472765 1474653 1478102 NC_000014.9 scf7180000172804 100.0 True fake: scaffold gap size wrong estimation (local) 31473254 31473820 1478629 1479195 NC_000014.9 scf7180000172804 99.65 True fake: scaffold gap size wrong estimation (local) 31474087 31477547 1479336 1482809 NC_000014.9 scf7180000172804 96.93 True fake: scaffold gap size wrong estimation (local) 31478070 31478617 1483412 1483959 NC_000014.9 scf7180000172804 96.35 True indel: indel (> 5bp) 31478625 31480870 1483960 1486205 NC_000014.9 scf7180000172804 99.11 True fake: scaffold gap size wrong estimation (local) 31481110 31485387 1486466 1490761 NC_000014.9 scf7180000172804 99.84 True fake: scaffold gap size wrong estimation (local) 31485500 31487447 1490785 1492817 NC_000014.9 scf7180000172804 99.64 True fake: scaffold gap size wrong estimation (local) 31487711 31491988 1493049 1497241 NC_000014.9 scf7180000172804 97.83 True fake: scaffold gap size wrong estimation (local) 31492052 31493638 1497483 1499069 NC_000014.9 scf7180000172804 99.62 True indel: indel (<= 5bp) 31493639 31496103 1499072 1501536 NC_000014.9 scf7180000172804 98.99 True fake: scaffold gap size wrong estimation (local) 31498058 31499613 1503432 1504983 NC_000014.9 scf7180000172804 98.83 True fake: scaffold gap size wrong estimation (local) 31500635 31507546 1505805 1512734 NC_000014.9 scf7180000172804 99.91 True fake: scaffold gap size wrong estimation (local) 31507685 31509790 1512887 1514991 NC_000014.9 scf7180000172804 99.57 True fake: scaffold gap size wrong estimation (local) 31509877 31512440 1515087 1517674 NC_000014.9 scf7180000172804 98.95 True fake: scaffold gap size wrong estimation (local) 31512529 31515793 1517785 1521197 NC_000014.9 scf7180000172804 97.38 True fake: scaffold gap size wrong estimation (local) 31516094 31526767 1521409 1531921 NC_000014.9 scf7180000172804 98.38 True fake: scaffold gap size wrong estimation (local) 31527440 31531133 1534206 1538000 NC_000014.9 scf7180000172804 97.24 True fake: scaffold gap size wrong estimation (local) 31531382 31531965 1538220 1538803 NC_000014.9 scf7180000172804 99.83 True fake: scaffold gap size wrong estimation (local) 31532157 31533618 1538999 1540460 NC_000014.9 scf7180000172804 99.93 True fake: scaffold gap size wrong estimation (local) 31534496 31539904 1541244 1546651 NC_000014.9 scf7180000172804 99.96 True local misassembly 31540356 31541065 1546653 1547375 NC_000014.9 scf7180000172804 99.29 True fake: scaffold gap size wrong estimation (local) 31541266 31551480 1547841 1557906 NC_000014.9 scf7180000172804 98.48 True fake: scaffold gap size wrong estimation (local) 31551739 31559609 1558077 1565947 NC_000014.9 scf7180000172804 99.99 True CONTIG scf7180000172804 1565947 misassembled 43199079 43230913 1 31835 NC_000014.9 scf7180000172805 99.98 True fake: scaffold gap size wrong estimation (local) 43231087 43231661 32017 32591 NC_000014.9 scf7180000172805 99.65 True indel: indel (<= 5bp) 43231853 43245686 32782 46635 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 43246371 43253876 47239 54768 NC_000014.9 scf7180000172805 99.79 True relocation, scaffold gap is present, inconsistency = 46148659 89404524 89405232 57465 56757 NC_000014.9 scf7180000172805 99.58 True fake: scaffold gap size wrong estimation (local) 89401320 89403455 60714 58579 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 89398950 89401200 63080 60830 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 89396847 89398789 65117 63162 NC_000014.9 scf7180000172805 99.85 True fake: not a misassembly (possible transposable element) 50520170 50520877 65848 65141 NC_000014.9 scf7180000172805 99.6 True fake: not a misassembly (possible transposable element) 89394422 89396638 68065 65849 NC_000014.9 scf7180000172805 99.95 True fake: scaffold gap size wrong estimation (local) 89393142 89394225 69482 68399 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 89385714 89392649 77010 70022 NC_000014.9 scf7180000172805 99.44 True fake: scaffold gap size wrong estimation (local) 89381159 89385500 81523 77197 NC_000014.9 scf7180000172805 99.03 True fake: scaffold gap size wrong estimation (local) 89379904 89380923 82795 81776 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 89378889 89379741 83885 83033 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 89377317 89378711 85410 84016 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 89376043 89376831 86722 85934 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 89374309 89375845 88364 86857 NC_000014.9 scf7180000172805 97.96 True fake: scaffold gap size wrong estimation (local) 89368332 89374173 94528 88594 NC_000014.9 scf7180000172805 98.56 True fake: scaffold gap size wrong estimation (local) 89366241 89368073 96515 94684 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 89362699 89366008 99982 96718 NC_000014.9 scf7180000172805 98.23 True fake: scaffold gap size wrong estimation (local) 89359239 89360563 102202 100878 NC_000014.9 scf7180000172805 96.98 True indel: indel (> 5bp) 89357558 89359187 103832 102203 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 89356421 89357463 105042 104000 NC_000014.9 scf7180000172805 99.33 True fake: scaffold gap size wrong estimation (local) 89355404 89356080 105944 105268 NC_000014.9 scf7180000172805 97.05 True fake: scaffold gap size wrong estimation (local) 89347882 89354358 113504 107028 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 89344027 89347697 117371 113642 NC_000014.9 scf7180000172805 99.08 True fake: scaffold gap size wrong estimation (local) 89339191 89343489 122100 117802 NC_000014.9 scf7180000172805 99.4 True local misassembly 89337891 89338538 122748 122101 NC_000014.9 scf7180000172805 99.38 True fake: not a misassembly (possible transposable element) 90144717 90145257 123309 122769 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 89338604 89339231 123937 123310 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 89336217 89337648 126470 125039 NC_000014.9 scf7180000172805 100.0 True indel: indel (> 5bp) 89335094 89336137 127611 126568 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 89329875 89333234 132660 129302 NC_000014.9 scf7180000172805 99.79 True fake: scaffold gap size wrong estimation (local) 89318341 89329610 143722 132903 NC_000014.9 scf7180000172805 95.52 True fake: scaffold gap size wrong estimation (local) 89316864 89318163 145169 143870 NC_000014.9 scf7180000172805 99.77 True fake: scaffold gap size wrong estimation (local) 89311802 89316657 149996 145332 NC_000014.9 scf7180000172805 95.99 True fake: scaffold gap size wrong estimation (local) 89308116 89311052 153840 150904 NC_000014.9 scf7180000172805 99.76 True indel: indel (> 5bp) 89301528 89308062 160364 153881 NC_000014.9 scf7180000172805 98.92 True fake: scaffold gap size wrong estimation (local) 89297563 89300200 164296 161651 NC_000014.9 scf7180000172805 99.96 True fake: scaffold gap size wrong estimation (local) 89295790 89296732 165989 165047 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 89285524 89295678 176245 166158 NC_000014.9 scf7180000172805 99.01 True fake: scaffold gap size wrong estimation (local) 89278172 89285276 183529 176444 NC_000014.9 scf7180000172805 99.53 True fake: not a misassembly (possible transposable element) 59697384 59698736 183562 184914 NC_000014.9 scf7180000172805 99.93 True fake: not a misassembly (possible transposable element) 89272292 89278108 190723 184915 NC_000014.9 scf7180000172805 99.79 True fake: scaffold gap size wrong estimation (local) 89264425 89272062 198533 190896 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 89261761 89263925 201152 198987 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 89257717 89261656 205168 201229 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 89252671 89257716 210696 205651 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 89236498 89252398 226957 210920 NC_000014.9 scf7180000172805 99.05 True fake: scaffold gap size wrong estimation (local) 89225586 89236259 237855 227184 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 89222090 89224895 241304 238498 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 89206098 89221834 257290 241516 NC_000014.9 scf7180000172805 99.77 True fake: not a misassembly (possible transposable element) 102007839 102008540 257291 257991 NC_000014.9 scf7180000172805 99.86 True fake: not a misassembly (possible transposable element) 89199793 89206149 264362 258012 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 89197494 89199683 266641 264452 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 89177539 89197319 286363 266777 NC_000014.9 scf7180000172805 98.7 True fake: scaffold gap size wrong estimation (local) 89151262 89177023 312722 286972 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 89141440 89151141 322412 312914 NC_000014.9 scf7180000172805 97.89 True fake: scaffold gap size wrong estimation (local) 89133094 89141251 330696 322539 NC_000014.9 scf7180000172805 99.95 True fake: scaffold gap size wrong estimation (local) 89132332 89132836 331375 330869 NC_000014.9 scf7180000172805 99.41 True fake: scaffold gap size wrong estimation (local) 89130858 89132044 332876 331690 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 89112092 89130599 351606 333090 NC_000014.9 scf7180000172805 99.62 True indel: indel (<= 5bp) 89103668 89111819 360410 351878 NC_000014.9 scf7180000172805 95.23 True fake: scaffold gap size wrong estimation (local) 89101431 89102028 362797 362200 NC_000014.9 scf7180000172805 100.0 True relocation, scaffold gap is present, inconsistency = 3056492 86043501 86044697 364235 363039 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 86029425 86042447 378392 365346 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 86025692 86029155 382051 378610 NC_000014.9 scf7180000172805 99.13 True fake: scaffold gap size wrong estimation (local) 86017729 86024717 390035 383035 NC_000014.9 scf7180000172805 99.74 True fake: scaffold gap size wrong estimation (local) 86001910 86017192 406395 390433 NC_000014.9 scf7180000172805 95.75 True fake: scaffold gap size wrong estimation (local) 85998680 86000670 409454 407464 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 85975086 85998578 432942 409547 NC_000014.9 scf7180000172805 99.35 True relocation, scaffold gap is present, inconsistency = 54161772 31811364 31812217 434890 434039 NC_000014.9 scf7180000172805 97.07 True fake: scaffold gap size wrong estimation (local) 31797997 31806969 448327 439649 NC_000014.9 scf7180000172805 96.01 True fake: scaffold gap size wrong estimation (local) 31789327 31793834 458442 454094 NC_000014.9 scf7180000172805 96.13 True fake: scaffold gap size wrong estimation (local) 31767484 31789104 480831 458689 NC_000014.9 scf7180000172805 97.86 True fake: scaffold gap size wrong estimation (local) 31757511 31767326 490856 480994 NC_000014.9 scf7180000172805 99.65 True fake: scaffold gap size wrong estimation (local) 31752483 31754594 495399 493288 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 31751672 31752402 496574 495844 NC_000014.9 scf7180000172805 99.59 True fake: scaffold gap size wrong estimation (local) 31750469 31751439 497671 496701 NC_000014.9 scf7180000172805 99.69 True fake: scaffold gap size wrong estimation (local) 31747359 31750180 500856 498054 NC_000014.9 scf7180000172805 99.18 True fake: scaffold gap size wrong estimation (local) 31745519 31747081 502798 501236 NC_000014.9 scf7180000172805 98.53 True fake: scaffold gap size wrong estimation (local) 31739294 31744618 509042 503677 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 31732820 31739073 515402 509187 NC_000014.9 scf7180000172805 98.9 True fake: scaffold gap size wrong estimation (local) 31730680 31732085 517531 516126 NC_000014.9 scf7180000172805 99.79 True fake: scaffold gap size wrong estimation (local) 31729241 31730475 518953 517717 NC_000014.9 scf7180000172805 99.76 True fake: scaffold gap size wrong estimation (local) 31725878 31729030 522287 519134 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 31723590 31725728 524561 522422 NC_000014.9 scf7180000172805 99.63 True fake: scaffold gap size wrong estimation (local) 31722355 31723483 525835 524707 NC_000014.9 scf7180000172805 99.73 True fake: scaffold gap size wrong estimation (local) 31712359 31722082 535722 525999 NC_000014.9 scf7180000172805 99.77 True fake: scaffold gap size wrong estimation (local) 31711546 31712211 536452 535787 NC_000014.9 scf7180000172805 98.5 True fake: scaffold gap size wrong estimation (local) 31704608 31711639 544392 537139 NC_000014.9 scf7180000172805 96.93 True fake: scaffold gap size wrong estimation (local) 31700784 31704453 548170 544500 NC_000014.9 scf7180000172805 99.75 True fake: scaffold gap size wrong estimation (local) 31699129 31700545 549800 548384 NC_000014.9 scf7180000172805 99.72 True fake: scaffold gap size wrong estimation (local) 31694130 31698888 554671 549988 NC_000014.9 scf7180000172805 98.17 True fake: scaffold gap size wrong estimation (local) 31691073 31693798 557709 554984 NC_000014.9 scf7180000172805 99.89 True indel: indel (<= 5bp) 31689934 31691072 558852 557714 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 31688625 31689902 560678 559401 NC_000014.9 scf7180000172805 98.28 True fake: scaffold gap size wrong estimation (local) 31683967 31688417 565489 561039 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 31675138 31683363 574302 566064 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 31667299 31674900 582062 574460 NC_000014.9 scf7180000172805 99.58 True fake: scaffold gap size wrong estimation (local) 31664354 31666186 585073 583261 NC_000014.9 scf7180000172805 98.01 True fake: scaffold gap size wrong estimation (local) 31661781 31662668 587670 586797 NC_000014.9 scf7180000172805 98.16 True fake: scaffold gap size wrong estimation (local) 31654653 31661687 594847 587777 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 31653410 31654430 596244 595224 NC_000014.9 scf7180000172805 95.3 True local misassembly 31651899 31653105 597451 596245 NC_000014.9 scf7180000172805 99.75 True fake: scaffold gap size wrong estimation (local) 31650483 31651672 598944 597755 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 31645268 31649949 604100 599357 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 31641136 31645082 608131 604185 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 31639822 31640417 609457 608862 NC_000014.9 scf7180000172805 99.5 True fake: scaffold gap size wrong estimation (local) 31627766 31634149 622972 616589 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 31625669 31626185 625004 624488 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 31624803 31625668 625902 625037 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 31620902 31624649 629998 626143 NC_000014.9 scf7180000172805 97.37 True fake: scaffold gap size wrong estimation (local) 31619291 31620367 631842 630766 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 31613729 31615539 636560 634750 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 31612647 31613486 637845 637006 NC_000014.9 scf7180000172805 97.62 True local misassembly 31610613 31612397 639630 637846 NC_000014.9 scf7180000172805 99.44 True fake: scaffold gap size wrong estimation (local) 31609084 31610612 641175 639647 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 31607362 31608311 643347 642398 NC_000014.9 scf7180000172805 99.79 True fake: scaffold gap size wrong estimation (local) 31606313 31607190 644413 643536 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 31602408 31605723 648261 644956 NC_000014.9 scf7180000172805 99.61 True fake: scaffold gap size wrong estimation (local) 31600058 31600674 650396 649780 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 31596092 31599938 654378 650532 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 31593537 31595935 656936 654538 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 31591435 31593292 659008 657151 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 31577681 31591328 672739 659131 NC_000014.9 scf7180000172805 99.42 True fake: scaffold gap size wrong estimation (local) 31574817 31577451 675590 672956 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 103667531 103668714 676774 675591 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 31572321 31574267 678772 676826 NC_000014.9 scf7180000172805 98.77 True local misassembly 31571702 31572288 680124 679538 NC_000014.9 scf7180000172805 96.42 True local misassembly 31569379 31571464 682243 680158 NC_000014.9 scf7180000172805 99.71 True fake: scaffold gap size wrong estimation (local) 31568457 31569253 683849 683053 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 31564540 31568456 689500 685584 NC_000014.9 scf7180000172805 99.31 True indel: indel (> 5bp) 31562870 31564458 691089 689501 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 31559683 31562603 694268 691346 NC_000014.9 scf7180000172805 99.32 True relocation, inconsistency = 11289847 20269216 20269835 694269 694888 NC_000014.9 scf7180000172805 97.87 True relocation, scaffold gap is present, inconsistency = 63809878 84079773 84098873 714135 694948 NC_000014.9 scf7180000172805 99.02 True fake: scaffold gap size wrong estimation (local) 84047322 84079501 746735 714351 NC_000014.9 scf7180000172805 98.93 True fake: scaffold gap size wrong estimation (local) 84044666 84047122 749334 746878 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 84036334 84044407 757664 749576 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 84000616 84036172 793417 757880 NC_000014.9 scf7180000172805 99.65 True fake: scaffold gap size wrong estimation (local) 83999239 84000387 794748 793600 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83980354 83998691 813463 795111 NC_000014.9 scf7180000172805 98.47 True fake: scaffold gap size wrong estimation (local) 83933956 83980181 859901 813605 NC_000014.9 scf7180000172805 98.49 True indel: indel (> 5bp) 83932418 83933695 861422 860145 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83930828 83932225 862930 861533 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83905171 83930643 888609 863056 NC_000014.9 scf7180000172805 98.89 True fake: scaffold gap size wrong estimation (local) 83904168 83904964 889509 888713 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83885328 83903928 908394 889781 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 83881707 83885249 912019 908478 NC_000014.9 scf7180000172805 99.97 True fake: scaffold gap size wrong estimation (local) 83879081 83881435 914689 912335 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83873335 83878863 920418 914890 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 83869647 83873017 924089 920674 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 83858374 83869147 935317 924517 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 83853775 83858121 939903 935561 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 83852890 83853583 940790 940097 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83839479 83852698 954120 940876 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 83808707 83839334 985067 954275 NC_000014.9 scf7180000172805 99.3 True fake: scaffold gap size wrong estimation (local) 83807844 83808558 985923 985209 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83790320 83807617 1003151 986077 NC_000014.9 scf7180000172805 98.54 True fake: scaffold gap size wrong estimation (local) 83784513 83790139 1008923 1003297 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 83776321 83784339 1017053 1009051 NC_000014.9 scf7180000172805 99.64 True fake: scaffold gap size wrong estimation (local) 83768441 83776103 1024960 1017294 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 83704855 83768219 1088683 1025171 NC_000014.9 scf7180000172805 99.47 True fake: scaffold gap size wrong estimation (local) 83686471 83704573 1106974 1088873 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 83667726 83686347 1125938 1107310 NC_000014.9 scf7180000172805 99.63 True fake: scaffold gap size wrong estimation (local) 83655238 83667335 1138367 1126243 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 83651396 83655012 1142165 1138549 NC_000014.9 scf7180000172805 99.97 True fake: scaffold gap size wrong estimation (local) 83650250 83651297 1143289 1142242 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83645260 83649935 1148175 1143500 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 83629479 83639391 1164645 1154720 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 83627544 83628302 1166527 1165769 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83619927 83627323 1174079 1166682 NC_000014.9 scf7180000172805 99.77 True fake: scaffold gap size wrong estimation (local) 83607871 83619697 1186108 1174272 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 83592373 83608913 1202904 1186383 NC_000014.9 scf7180000172805 99.67 True fake: scaffold gap size wrong estimation (local) 83591411 83591997 1203828 1203242 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 83590213 83591405 1205120 1203928 NC_000014.9 scf7180000172805 98.16 True fake: scaffold gap size wrong estimation (local) 83580554 83589934 1214846 1205522 NC_000014.9 scf7180000172805 99.4 True local misassembly 83586457 83587063 1215560 1214954 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83564498 83580411 1231744 1215831 NC_000014.9 scf7180000172805 99.97 True fake: scaffold gap size wrong estimation (local) 83547560 83564333 1248677 1231879 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 83545812 83547317 1250430 1248925 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83536778 83545612 1259344 1250545 NC_000014.9 scf7180000172805 99.22 True fake: scaffold gap size wrong estimation (local) 83534728 83536578 1261388 1259538 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 83531220 83534594 1265028 1261646 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 83524528 83530850 1271637 1265317 NC_000014.9 scf7180000172805 99.76 True fake: scaffold gap size wrong estimation (local) 83516307 83524243 1279801 1271830 NC_000014.9 scf7180000172805 99.62 True fake: scaffold gap size wrong estimation (local) 83514611 83516163 1281450 1279898 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83448660 83514417 1347180 1281564 NC_000014.9 scf7180000172805 99.12 True fake: scaffold gap size wrong estimation (local) 83435992 83448576 1359845 1347227 NC_000014.9 scf7180000172805 99.81 True fake: not a misassembly (possible transposable element) 95346292 95347445 1359846 1360999 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 83411930 83435904 1384893 1361037 NC_000014.9 scf7180000172805 99.11 True fake: not a misassembly (possible transposable element) 97901298 97902437 1385224 1386363 NC_000014.9 scf7180000172805 99.75 True fake: not a misassembly (possible transposable element) 83366608 83411745 1431951 1386364 NC_000014.9 scf7180000172805 98.61 True indel: stretch of mismatches 83342433 83366514 1455938 1432045 NC_000014.9 scf7180000172805 99.1 True fake: scaffold gap size wrong estimation (local) 83330814 83341831 1467700 1456683 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 83302904 83330357 1495652 1468073 NC_000014.9 scf7180000172805 99.33 True fake: scaffold gap size wrong estimation (local) 83285655 83302587 1512604 1495836 NC_000014.9 scf7180000172805 98.92 True local misassembly 83266160 83285297 1532226 1512648 NC_000014.9 scf7180000172805 97.55 True fake: scaffold gap size wrong estimation (local) 83264357 83265958 1533975 1532374 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 83229390 83264085 1568986 1534205 NC_000014.9 scf7180000172805 99.29 True fake: scaffold gap size wrong estimation (local) 83226690 83229224 1571651 1569116 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 83222704 83226499 1575578 1571783 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 83221561 83222487 1576603 1575677 NC_000014.9 scf7180000172805 99.68 True fake: scaffold gap size wrong estimation (local) 83204690 83220632 1593440 1577497 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 83193533 83201869 1607674 1599289 NC_000014.9 scf7180000172805 99.36 True fake: scaffold gap size wrong estimation (local) 83187694 83193295 1613538 1607939 NC_000014.9 scf7180000172805 99.73 True fake: scaffold gap size wrong estimation (local) 83180783 83187603 1620404 1613639 NC_000014.9 scf7180000172805 99.03 True fake: scaffold gap size wrong estimation (local) 83179601 83180622 1621531 1620510 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 83176505 83178760 1624568 1622313 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 83172901 83176504 1628938 1625335 NC_000014.9 scf7180000172805 99.81 True indel: indel (<= 5bp) 83172039 83172899 1629799 1628939 NC_000014.9 scf7180000172805 99.77 True indel: indel (<= 5bp) 83170120 83172038 1631719 1629801 NC_000014.9 scf7180000172805 98.44 True local misassembly 83167859 83169379 1633345 1631825 NC_000014.9 scf7180000172805 96.58 True indel: indel (> 5bp) 83165961 83167796 1635181 1633346 NC_000014.9 scf7180000172805 96.51 True indel: indel (> 5bp) 83163904 83165784 1637209 1635329 NC_000014.9 scf7180000172805 99.63 True indel: indel (<= 5bp) 83160318 83163903 1640796 1637211 NC_000014.9 scf7180000172805 99.8 True indel: indel (<= 5bp) 83157619 83160315 1643493 1640797 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 83148618 83157271 1652510 1643857 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 83146512 83148353 1654633 1652792 NC_000014.9 scf7180000172805 99.73 True fake: scaffold gap size wrong estimation (local) 83145436 83146511 1656415 1655340 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 83118502 83144387 1683332 1657417 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 83095488 83118354 1706490 1683390 NC_000014.9 scf7180000172805 96.51 True fake: scaffold gap size wrong estimation (local) 83060470 83095334 1741786 1706588 NC_000014.9 scf7180000172805 98.79 True fake: scaffold gap size wrong estimation (local) 83046272 83060170 1755902 1742002 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 83016620 83046059 1785463 1756086 NC_000014.9 scf7180000172805 99.56 True fake: scaffold gap size wrong estimation (local) 83009597 83016350 1792455 1785698 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 83008350 83009539 1794086 1792897 NC_000014.9 scf7180000172805 98.91 True fake: scaffold gap size wrong estimation (local) 83003260 83008211 1799207 1794213 NC_000014.9 scf7180000172805 99.36 True fake: scaffold gap size wrong estimation (local) 82999584 83002996 1802841 1799429 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 82990090 82999407 1812202 1802958 NC_000014.9 scf7180000172805 98.97 True fake: scaffold gap size wrong estimation (local) 82981956 82989815 1820154 1812372 NC_000014.9 scf7180000172805 98.88 True fake: scaffold gap size wrong estimation (local) 82957659 82981733 1844431 1820296 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 82950373 82957569 1851739 1844549 NC_000014.9 scf7180000172805 99.68 True fake: scaffold gap size wrong estimation (local) 82944491 82950141 1857598 1851952 NC_000014.9 scf7180000172805 99.72 True fake: scaffold gap size wrong estimation (local) 82941860 82944258 1860179 1857781 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 82935153 82941526 1866688 1860503 NC_000014.9 scf7180000172805 96.85 True fake: not a misassembly (possible transposable element) 44549755 44550867 1866744 1867856 NC_000014.9 scf7180000172805 99.82 True fake: not a misassembly (possible transposable element) 82930664 82934936 1872129 1867857 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 82928808 82930785 1874565 1872588 NC_000014.9 scf7180000172805 99.75 True local misassembly 82926164 82928592 1877080 1874652 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 82914560 82925921 1888753 1877326 NC_000014.9 scf7180000172805 99.2 True fake: scaffold gap size wrong estimation (local) 82895856 82914344 1907492 1889006 NC_000014.9 scf7180000172805 99.95 True fake: scaffold gap size wrong estimation (local) 82893782 82895617 1909956 1908119 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 82890496 82891215 1910748 1910029 NC_000014.9 scf7180000172805 100.0 True local misassembly 82891196 82893506 1913136 1910826 NC_000014.9 scf7180000172805 99.96 True fake: scaffold gap size wrong estimation (local) 82886205 82890373 1918647 1914458 NC_000014.9 scf7180000172805 99.66 True fake: scaffold gap size wrong estimation (local) 82874028 82885711 1930769 1919086 NC_000014.9 scf7180000172805 99.97 True fake: scaffold gap size wrong estimation (local) 82863123 82873801 1941637 1930959 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 82857510 82862891 1947152 1941771 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 82825848 82857265 1979751 1947325 NC_000014.9 scf7180000172805 96.5 True fake: scaffold gap size wrong estimation (local) 82816570 82825612 1989096 1979924 NC_000014.9 scf7180000172805 98.52 True fake: scaffold gap size wrong estimation (local) 82815214 82816464 1990466 1989216 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 82773314 82813326 2032116 1992095 NC_000014.9 scf7180000172805 99.08 True fake: scaffold gap size wrong estimation (local) 82770597 82773102 2034857 2032352 NC_000014.9 scf7180000172805 96.85 True local misassembly 82765943 82770501 2039416 2034858 NC_000014.9 scf7180000172805 99.96 True fake: scaffold gap size wrong estimation (local) 82761421 82765703 2045530 2041248 NC_000014.9 scf7180000172805 99.25 True indel: indel (> 5bp) 82760390 82760889 2046529 2046030 NC_000014.9 scf7180000172805 100.0 True indel: indel (<= 5bp) 82753799 82760387 2053118 2046530 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 82747444 82753798 2059488 2053134 NC_000014.9 scf7180000172805 99.5 True fake: scaffold gap size wrong estimation (local) 82742932 82746751 2063979 2060154 NC_000014.9 scf7180000172805 99.76 True fake: scaffold gap size wrong estimation (local) 82738730 82742658 2068109 2064179 NC_000014.9 scf7180000172805 99.57 True fake: scaffold gap size wrong estimation (local) 82735650 82738038 2071186 2068798 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 82733945 82735544 2072919 2071338 NC_000014.9 scf7180000172805 98.73 True fake: scaffold gap size wrong estimation (local) 82701217 82733811 2105348 2073047 NC_000014.9 scf7180000172805 98.74 True fake: scaffold gap size wrong estimation (local) 82681218 82701235 2125638 2105599 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 82679971 82681076 2126862 2125757 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 82676313 82679776 2130507 2127044 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 82663885 82674820 2142837 2131930 NC_000014.9 scf7180000172805 99.7 True indel: indel (<= 5bp) 82652079 82663814 2154670 2142907 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 82648191 82651682 2158422 2154931 NC_000014.9 scf7180000172805 99.94 True fake: scaffold gap size wrong estimation (local) 82645602 82646434 2159736 2158904 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 82621869 82648043 2185964 2159787 NC_000014.9 scf7180000172805 99.93 True fake: not a misassembly (possible transposable element) 55293326 55294957 2186054 2187685 NC_000014.9 scf7180000172805 99.82 True fake: not a misassembly (possible transposable element) 82606927 82621668 2202509 2187885 NC_000014.9 scf7180000172805 98.96 True fake: scaffold gap size wrong estimation (local) 82570323 82606676 2239140 2202814 NC_000014.9 scf7180000172805 97.58 True indel: indel (<= 5bp) 82546347 82570304 2263079 2239163 NC_000014.9 scf7180000172805 96.77 True fake: scaffold gap size wrong estimation (local) 82542375 82545013 2267303 2264665 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 82539263 82541862 2270671 2268122 NC_000014.9 scf7180000172805 97.84 True fake: scaffold gap size wrong estimation (local) 82483500 82539098 2326243 2270798 NC_000014.9 scf7180000172805 99.36 True fake: scaffold gap size wrong estimation (local) 82475512 82482835 2334128 2326805 NC_000014.9 scf7180000172805 99.95 True fake: scaffold gap size wrong estimation (local) 82474569 82475325 2335091 2334335 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 82470479 82472766 2338979 2336692 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 82469482 82470189 2340118 2339411 NC_000014.9 scf7180000172805 99.72 True fake: scaffold gap size wrong estimation (local) 82467536 82468868 2341820 2340488 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 82408120 82466658 2401140 2342548 NC_000014.9 scf7180000172805 99.21 True local misassembly 82408638 82409484 2402037 2401191 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 82376383 82407890 2434705 2402578 NC_000014.9 scf7180000172805 96.47 True fake: scaffold gap size wrong estimation (local) 82353532 82376047 2457579 2435121 NC_000014.9 scf7180000172805 99.59 True fake: scaffold gap size wrong estimation (local) 82336462 82347686 2475769 2464527 NC_000014.9 scf7180000172805 99.99 True fake: scaffold gap size wrong estimation (local) 82321032 82336352 2491695 2476153 NC_000014.9 scf7180000172805 98.7 True fake: scaffold gap size wrong estimation (local) 82319871 82320522 2492641 2491990 NC_000014.9 scf7180000172805 99.23 True indel: indel (> 5bp) 82318413 82319382 2494092 2493124 NC_000014.9 scf7180000172805 99.59 True fake: scaffold gap size wrong estimation (local) 82303905 82317523 2508925 2495283 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 82286314 82303681 2527032 2509054 NC_000014.9 scf7180000172805 98.4 True fake: scaffold gap size wrong estimation (local) 82266203 82285818 2547172 2527547 NC_000014.9 scf7180000172805 99.54 True fake: scaffold gap size wrong estimation (local) 82252196 82265937 2560918 2547388 NC_000014.9 scf7180000172805 98.3 True fake: scaffold gap size wrong estimation (local) 82248654 82251933 2564395 2561120 NC_000014.9 scf7180000172805 99.7 True local misassembly 82245377 82246894 2566551 2565034 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 82235264 82240520 2573553 2568322 NC_000014.9 scf7180000172805 97.02 True fake: scaffold gap size wrong estimation (local) 82219162 82234888 2589529 2573798 NC_000014.9 scf7180000172805 99.96 True fake: scaffold gap size wrong estimation (local) 82215167 82218991 2593448 2589623 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 82207058 82214935 2601493 2593618 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 82206309 82206832 2602219 2601696 NC_000014.9 scf7180000172805 99.62 True fake: scaffold gap size wrong estimation (local) 82186081 82205835 2622499 2602673 NC_000014.9 scf7180000172805 98.95 True fake: scaffold gap size wrong estimation (local) 82184776 82185583 2623783 2622976 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 82160899 82183637 2647651 2625110 NC_000014.9 scf7180000172805 98.91 True fake: scaffold gap size wrong estimation (local) 82142679 82160737 2665720 2647786 NC_000014.9 scf7180000172805 99.12 True fake: scaffold gap size wrong estimation (local) 82088477 82142461 2719827 2665942 NC_000014.9 scf7180000172805 99.23 True fake: scaffold gap size wrong estimation (local) 82065105 82088562 2743453 2719997 NC_000014.9 scf7180000172805 99.57 True fake: scaffold gap size wrong estimation (local) 82063509 82064684 2744962 2743819 NC_000014.9 scf7180000172805 96.82 True fake: scaffold gap size wrong estimation (local) 82061344 82063191 2747021 2745172 NC_000014.9 scf7180000172805 98.11 True fake: scaffold gap size wrong estimation (local) 82054859 82060960 2753509 2747404 NC_000014.9 scf7180000172805 99.87 True fake: scaffold gap size wrong estimation (local) 82041458 82054636 2766846 2753707 NC_000014.9 scf7180000172805 99.64 True fake: scaffold gap size wrong estimation (local) 82038265 82041281 2769985 2766969 NC_000014.9 scf7180000172805 99.73 True fake: scaffold gap size wrong estimation (local) 82036985 82038025 2771160 2770120 NC_000014.9 scf7180000172805 99.52 True local misassembly 82032211 82032787 2771737 2771161 NC_000014.9 scf7180000172805 96.36 True fake: scaffold gap size wrong estimation (local) 82030796 82032049 2773099 2771846 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 82025069 82030540 2778886 2773415 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 82019998 82024789 2783855 2779117 NC_000014.9 scf7180000172805 98.76 True fake: scaffold gap size wrong estimation (local) 81995488 82019740 2809421 2784094 NC_000014.9 scf7180000172805 95.66 True fake: scaffold gap size wrong estimation (local) 81992425 81995285 2812434 2809574 NC_000014.9 scf7180000172805 97.13 True indel: indel (> 5bp) 81988421 81992411 2816425 2812435 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 81985218 81988177 2820598 2817639 NC_000014.9 scf7180000172805 99.73 True indel: indel (<= 5bp) 81983489 81984922 2822325 2820892 NC_000014.9 scf7180000172805 99.79 True indel: indel (<= 5bp) 81946116 81983412 2859617 2822401 NC_000014.9 scf7180000172805 99.71 True fake: scaffold gap size wrong estimation (local) 81927867 81944879 2877793 2860760 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 81924054 81926730 2881439 2878763 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81915970 81922991 2889565 2882555 NC_000014.9 scf7180000172805 99.51 True fake: scaffold gap size wrong estimation (local) 81908764 81915828 2896727 2889685 NC_000014.9 scf7180000172805 99.53 True fake: scaffold gap size wrong estimation (local) 81898115 81908795 2907863 2897229 NC_000014.9 scf7180000172805 99.5 True fake: scaffold gap size wrong estimation (local) 81891942 81897939 2914096 2908068 NC_000014.9 scf7180000172805 99.62 True fake: scaffold gap size wrong estimation (local) 81890638 81891616 2915930 2914952 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81887798 81890458 2918768 2916108 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81883452 81887611 2923057 2918898 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 102266819 102267329 2923251 2923761 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 81870822 81883308 2936313 2923827 NC_000014.9 scf7180000172805 99.94 True relocation, scaffold gap is present, inconsistency = 20384189 102267548 102268660 2936364 2937476 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 102269713 102270362 2938553 2939202 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 81867965 81870616 2941919 2939268 NC_000014.9 scf7180000172805 100.0 True fake: not a misassembly (possible transposable element) 102270397 102270991 2941986 2942580 NC_000014.9 scf7180000172805 100.0 True relocation, scaffold gap is present, inconsistency = 20402506 81866149 81867735 2944322 2942736 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 81864843 81866148 2946418 2945113 NC_000014.9 scf7180000172805 99.85 True relocation, scaffold gap is present, inconsistency = 20407322 102277031 102277530 2949979 2950478 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 102277618 102281129 2951363 2954900 NC_000014.9 scf7180000172805 99.6 True relocation, scaffold gap is present, inconsistency = 20417979 81857901 81859588 2956638 2954951 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 81846076 81857819 2968436 2956691 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 81844220 81844948 2970242 2969514 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81843387 81843904 2970973 2970456 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 81839904 81842866 2974503 2971541 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81834819 81839903 2980834 2975750 NC_000014.9 scf7180000172805 99.53 True indel: indel (> 5bp) 81830320 81834777 2985292 2980835 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81829164 81829872 2986592 2985884 NC_000014.9 scf7180000172805 99.29 True fake: scaffold gap size wrong estimation (local) 81811406 81829233 3004806 2987550 NC_000014.9 scf7180000172805 96.49 True fake: scaffold gap size wrong estimation (local) 81808512 81811214 3007605 3004903 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 81788468 81807962 3027484 3008178 NC_000014.9 scf7180000172805 97.91 True fake: scaffold gap size wrong estimation (local) 81776248 81788248 3040455 3028142 NC_000014.9 scf7180000172805 96.08 True fake: scaffold gap size wrong estimation (local) 81758784 81776063 3058051 3040697 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 81744437 81758574 3072317 3058249 NC_000014.9 scf7180000172805 99.31 True fake: scaffold gap size wrong estimation (local) 81730474 81744286 3086218 3072407 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 81712860 81730223 3103801 3086442 NC_000014.9 scf7180000172805 99.91 True fake: scaffold gap size wrong estimation (local) 81707515 81712641 3109357 3103963 NC_000014.9 scf7180000172805 95.09 True fake: scaffold gap size wrong estimation (local) 81698515 81707102 3117992 3109484 NC_000014.9 scf7180000172805 98.96 True fake: scaffold gap size wrong estimation (local) 81697293 81698233 3119141 3118201 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 81695434 81697024 3121011 3119421 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 81690336 81695107 3125987 3121253 NC_000014.9 scf7180000172805 98.11 True fake: scaffold gap size wrong estimation (local) 81683446 81690118 3132895 3126239 NC_000014.9 scf7180000172805 99.43 True fake: scaffold gap size wrong estimation (local) 81666087 81683363 3150254 3132994 NC_000014.9 scf7180000172805 96.22 True fake: scaffold gap size wrong estimation (local) 81664456 81665430 3151848 3150874 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81663676 81664212 3152670 3152134 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81659109 81663490 3157148 3152813 NC_000014.9 scf7180000172805 98.81 True fake: scaffold gap size wrong estimation (local) 81649945 81658972 3166735 3157699 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 81646186 81649605 3171471 3168052 NC_000014.9 scf7180000172805 99.8 True fake: scaffold gap size wrong estimation (local) 81643293 81645978 3174333 3171648 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 81642130 81643046 3175731 3174815 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81639647 81641008 3177529 3176168 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 81638529 81639646 3178758 3177641 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 81637398 81638349 3179850 3178899 NC_000014.9 scf7180000172805 99.79 True fake: scaffold gap size wrong estimation (local) 81624159 81636481 3193536 3180771 NC_000014.9 scf7180000172805 96.04 True fake: scaffold gap size wrong estimation (local) 81621239 81623960 3196678 3194076 NC_000014.9 scf7180000172805 95.44 True fake: scaffold gap size wrong estimation (local) 81611829 81621140 3205974 3196771 NC_000014.9 scf7180000172805 98.45 True fake: scaffold gap size wrong estimation (local) 81604793 81611562 3213000 3206203 NC_000014.9 scf7180000172805 99.4 True fake: scaffold gap size wrong estimation (local) 81603278 81604658 3214501 3213121 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 81602585 81603107 3215146 3214624 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81599823 81602466 3217889 3215246 NC_000014.9 scf7180000172805 99.85 True fake: scaffold gap size wrong estimation (local) 81597231 81599562 3220434 3218106 NC_000014.9 scf7180000172805 99.7 True fake: scaffold gap size wrong estimation (local) 81596312 81597027 3221430 3220715 NC_000014.9 scf7180000172805 99.72 True fake: scaffold gap size wrong estimation (local) 81582233 81596118 3235425 3221490 NC_000014.9 scf7180000172805 99.64 True fake: scaffold gap size wrong estimation (local) 81570184 81581577 3247516 3235952 NC_000014.9 scf7180000172805 97.63 True fake: scaffold gap size wrong estimation (local) 81565389 81569978 3252261 3247676 NC_000014.9 scf7180000172805 99.85 True fake: not a misassembly (possible transposable element) 44509317 44510950 3253895 3252262 NC_000014.9 scf7180000172805 99.94 True fake: not a misassembly (possible transposable element) 81560800 81564773 3257999 3253922 NC_000014.9 scf7180000172805 99.55 True fake: scaffold gap size wrong estimation (local) 81555082 81560676 3263706 3258093 NC_000014.9 scf7180000172805 99.86 True fake: scaffold gap size wrong estimation (local) 81554375 81554921 3264460 3263915 NC_000014.9 scf7180000172805 99.82 True fake: scaffold gap size wrong estimation (local) 81553666 81554182 3265143 3264627 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81552538 81553586 3266489 3265441 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 81549462 81552322 3269631 3266771 NC_000014.9 scf7180000172805 99.97 True fake: scaffold gap size wrong estimation (local) 81547151 81547783 3271723 3271091 NC_000014.9 scf7180000172805 99.37 True fake: scaffold gap size wrong estimation (local) 81542033 81542547 3274949 3274436 NC_000014.9 scf7180000172805 99.22 True fake: scaffold gap size wrong estimation (local) 81518683 81541474 3298717 3275888 NC_000014.9 scf7180000172805 99.81 True fake: scaffold gap size wrong estimation (local) 81500483 81518397 3316915 3299029 NC_000014.9 scf7180000172805 99.71 True fake: scaffold gap size wrong estimation (local) 81496242 81500325 3321290 3317067 NC_000014.9 scf7180000172805 95.13 True fake: scaffold gap size wrong estimation (local) 81490756 81495968 3326610 3321404 NC_000014.9 scf7180000172805 98.33 True fake: scaffold gap size wrong estimation (local) 81481960 81490647 3335349 3326696 NC_000014.9 scf7180000172805 99.58 True fake: scaffold gap size wrong estimation (local) 81480589 81481858 3337172 3335903 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81470120 81480268 3347616 3337456 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 81468717 81469897 3348925 3347747 NC_000014.9 scf7180000172805 99.66 True fake: scaffold gap size wrong estimation (local) 81467820 81468591 3349824 3349053 NC_000014.9 scf7180000172805 95.47 True fake: scaffold gap size wrong estimation (local) 81466415 81467594 3351351 3350172 NC_000014.9 scf7180000172805 97.97 True local misassembly 81465415 81466169 3352106 3351352 NC_000014.9 scf7180000172805 99.6 True fake: scaffold gap size wrong estimation (local) 81464196 81465305 3353837 3352728 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81463247 81463935 3354573 3353885 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81460799 81461689 3357173 3356283 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 81459151 81459984 3359110 3358277 NC_000014.9 scf7180000172805 96.88 True local misassembly 81458362 81458918 3359667 3359111 NC_000014.9 scf7180000172805 99.46 True fake: scaffold gap size wrong estimation (local) 81448091 81456050 3370461 3362486 NC_000014.9 scf7180000172805 99.77 True fake: scaffold gap size wrong estimation (local) 81446579 81447918 3371968 3370629 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81443584 81445168 3374885 3373301 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81439591 81441408 3378619 3376802 NC_000014.9 scf7180000172805 99.78 True fake: scaffold gap size wrong estimation (local) 81438102 81439590 3380662 3379174 NC_000014.9 scf7180000172805 98.66 True local misassembly 81436212 81437871 3382322 3380663 NC_000014.9 scf7180000172805 97.95 True fake: scaffold gap size wrong estimation (local) 81431925 81436211 3386655 3382369 NC_000014.9 scf7180000172805 99.98 True fake: scaffold gap size wrong estimation (local) 81415673 81431482 3403205 3387496 NC_000014.9 scf7180000172805 97.8 True fake: scaffold gap size wrong estimation (local) 81413228 81415549 3405564 3403344 NC_000014.9 scf7180000172805 95.48 True fake: scaffold gap size wrong estimation (local) 81411624 81413257 3407304 3405671 NC_000014.9 scf7180000172805 99.69 True fake: scaffold gap size wrong estimation (local) 81388219 81411463 3430886 3407427 NC_000014.9 scf7180000172805 97.37 True fake: scaffold gap size wrong estimation (local) 81357788 81387736 3461376 3431360 NC_000014.9 scf7180000172805 97.11 True fake: scaffold gap size wrong estimation (local) 81340101 81355787 3478736 3462880 NC_000014.9 scf7180000172805 98.65 True fake: scaffold gap size wrong estimation (local) 81329458 81339959 3489336 3478826 NC_000014.9 scf7180000172805 99.72 True fake: scaffold gap size wrong estimation (local) 81318161 81329222 3502997 3489627 NC_000014.9 scf7180000172805 98.8 True fake: scaffold gap size wrong estimation (local) 81308921 81318080 3512323 3503277 NC_000014.9 scf7180000172805 96.52 True fake: scaffold gap size wrong estimation (local) 81307777 81308297 3513067 3512547 NC_000014.9 scf7180000172805 99.62 True fake: scaffold gap size wrong estimation (local) 81306324 81307886 3515012 3513451 NC_000014.9 scf7180000172805 99.68 True fake: scaffold gap size wrong estimation (local) 81298018 81306168 3523387 3515080 NC_000014.9 scf7180000172805 98.39 True fake: scaffold gap size wrong estimation (local) 81295281 81297820 3526088 3523549 NC_000014.9 scf7180000172805 99.84 True fake: scaffold gap size wrong estimation (local) 81286020 81295099 3535280 3526203 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 81284155 81285893 3537111 3535373 NC_000014.9 scf7180000172805 99.88 True fake: scaffold gap size wrong estimation (local) 81283802 81284403 3538140 3537539 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 81265686 81283548 3556419 3538568 NC_000014.9 scf7180000172805 99.0 True fake: scaffold gap size wrong estimation (local) 81263549 81265475 3558518 3556592 NC_000014.9 scf7180000172805 100.0 True fake: scaffold gap size wrong estimation (local) 81260367 81263386 3561735 3558702 NC_000014.9 scf7180000172805 99.9 True relocation, inconsistency = 24492555 56767203 56767806 3562344 3561741 NC_000014.9 scf7180000172805 98.84 True relocation, scaffold gap is present, inconsistency = -13666865 70432067 70432936 3564345 3563476 NC_000014.9 scf7180000172805 98.62 True fake: scaffold gap size wrong estimation (local) 70430830 70432066 3565857 3564621 NC_000014.9 scf7180000172805 99.6 True fake: scaffold gap size wrong estimation (local) 70427184 70429639 3569619 3567041 NC_000014.9 scf7180000172805 99.92 True fake: scaffold gap size wrong estimation (local) 70425116 70426826 3571730 3570020 NC_000014.9 scf7180000172805 99.36 True local misassembly 70423742 70424305 3572524 3571961 NC_000014.9 scf7180000172805 99.65 True fake: scaffold gap size wrong estimation (local) 70419892 70423435 3576562 3573019 NC_000014.9 scf7180000172805 99.83 True fake: scaffold gap size wrong estimation (local) 70418947 70419732 3577460 3576675 NC_000014.9 scf7180000172805 99.75 True fake: scaffold gap size wrong estimation (local) 70407436 70418283 3588668 3578071 NC_000014.9 scf7180000172805 96.19 True fake: scaffold gap size wrong estimation (local) 70396750 70407315 3599393 3588798 NC_000014.9 scf7180000172805 99.64 True fake: scaffold gap size wrong estimation (local) 70393620 70396305 3602946 3599906 NC_000014.9 scf7180000172805 99.89 True fake: scaffold gap size wrong estimation (local) 70390932 70393060 3605243 3603115 NC_000014.9 scf7180000172805 99.95 True fake: scaffold gap size wrong estimation (local) 70388969 70390464 3607273 3605761 NC_000014.9 scf7180000172805 99.93 True fake: scaffold gap size wrong estimation (local) 70382023 70387585 3614079 3608497 NC_000014.9 scf7180000172805 99.17 True relocation, scaffold gap is present, inconsistency = 14986854 55394100 55395095 3615148 3614153 NC_000014.9 scf7180000172805 99.9 True fake: scaffold gap size wrong estimation (local) 55391484 55392569 3617745 3616660 NC_000014.9 scf7180000172805 100.0 True CONTIG scf7180000172805 3617745 misassembled 79262551 79263824 1274 1 NC_000014.9 scf7180000172806 100.0 True relocation, inconsistency = 43787439 35474418 35475105 1281 1966 NC_000014.9 scf7180000172806 99.27 True fake: scaffold gap size wrong estimation (local) 35475556 35486572 2371 13395 NC_000014.9 scf7180000172806 99.82 True fake: scaffold gap size wrong estimation (local) 35488789 35489594 15426 16231 NC_000014.9 scf7180000172806 100.0 True fake: scaffold gap size wrong estimation (local) 35491949 35494580 18146 20777 NC_000014.9 scf7180000172806 100.0 True fake: scaffold gap size wrong estimation (local) 35495975 35496579 22181 22786 NC_000014.9 scf7180000172806 98.68 True fake: scaffold gap size wrong estimation (local) 35497414 35498614 23755 24955 NC_000014.9 scf7180000172806 99.92 True fake: scaffold gap size wrong estimation (local) 35500298 35502081 26398 28206 NC_000014.9 scf7180000172806 99.22 True fake: scaffold gap size wrong estimation (local) 35502174 35515476 28356 41625 NC_000014.9 scf7180000172806 99.66 True fake: scaffold gap size wrong estimation (local) 35515626 35524636 41729 50769 NC_000014.9 scf7180000172806 99.73 True fake: scaffold gap size wrong estimation (local) 35525463 35527376 51418 53426 NC_000014.9 scf7180000172806 99.53 True fake: scaffold gap size wrong estimation (local) 35527594 35537815 53576 63815 NC_000014.9 scf7180000172806 99.98 True fake: scaffold gap size wrong estimation (local) 35538008 35541060 63914 66966 NC_000014.9 scf7180000172806 100.0 True fake: scaffold gap size wrong estimation (local) 35541262 35544941 67180 70890 NC_000014.9 scf7180000172806 99.62 True relocation, inconsistency = 8229376 43774318 43787481 84085 70891 NC_000014.9 scf7180000172806 99.83 True indel: indel (> 5bp) 43772049 43774260 86345 84134 NC_000014.9 scf7180000172806 100.0 True fake: scaffold gap size wrong estimation (local) 43738012 43771858 120297 86462 NC_000014.9 scf7180000172806 99.8 True fake: scaffold gap size wrong estimation (local) 43728686 43737631 129629 120604 NC_000014.9 scf7180000172806 99.62 True fake: scaffold gap size wrong estimation (local) 43726903 43728608 131407 129702 NC_000014.9 scf7180000172806 99.88 True fake: scaffold gap size wrong estimation (local) 43722308 43726653 135961 131616 NC_000014.9 scf7180000172806 99.98 True fake: scaffold gap size wrong estimation (local) 43704609 43722046 153913 136142 NC_000014.9 scf7180000172806 99.96 True fake: scaffold gap size wrong estimation (local) 43696677 43699076 162545 160146 NC_000014.9 scf7180000172806 99.67 True fake: scaffold gap size wrong estimation (local) 43670730 43696445 188368 162755 NC_000014.9 scf7180000172806 98.57 True fake: scaffold gap size wrong estimation (local) 43667893 43670142 191111 188854 NC_000014.9 scf7180000172806 99.87 True fake: scaffold gap size wrong estimation (local) 43663763 43667241 195211 191729 NC_000014.9 scf7180000172806 99.68 True fake: scaffold gap size wrong estimation (local) 43620906 43663505 238358 195488 NC_000014.9 scf7180000172806 98.68 True fake: scaffold gap size wrong estimation (local) 43618828 43620634 240400 238594 NC_000014.9 scf7180000172806 100.0 True fake: scaffold gap size wrong estimation (local) 43603376 43618688 255800 240469 NC_000014.9 scf7180000172806 99.94 True fake: scaffold gap size wrong estimation (local) 43585296 43598097 274725 261905 NC_000014.9 scf7180000172806 99.94 True fake: scaffold gap size wrong estimation (local) 43583011 43585059 276940 274892 NC_000014.9 scf7180000172806 99.95 True fake: scaffold gap size wrong estimation (local) 43580901 43581907 278989 277983 NC_000014.9 scf7180000172806 99.7 True CONTIG scf7180000172806 278989 misassembled 45795752 45796332 581 1 NC_000014.9 scf7180000172807 99.83 True fake: scaffold gap size wrong estimation (local) 45792395 45794645 4024 1747 NC_000014.9 scf7180000172807 99.65 True relocation, inconsistency = 47758021 93552667 93558300 4025 9735 NC_000014.9 scf7180000172807 99.45 True fake: scaffold gap size wrong estimation (local) 93558636 93562779 9853 14104 NC_000014.9 scf7180000172807 96.47 True fake: scaffold gap size wrong estimation (local) 93563095 93564663 14382 15904 NC_000014.9 scf7180000172807 96.58 True fake: not a misassembly (possible transposable element) 92046679 92047812 15989 17122 NC_000014.9 scf7180000172807 98.68 True fake: not a misassembly (possible transposable element) 93564781 93566656 17145 19018 NC_000014.9 scf7180000172807 99.52 True fake: scaffold gap size wrong estimation (local) 93566886 93567560 19109 19783 NC_000014.9 scf7180000172807 99.7 True fake: scaffold gap size wrong estimation (local) 93567561 93568520 19977 20936 NC_000014.9 scf7180000172807 99.9 True fake: scaffold gap size wrong estimation (local) 93568720 93581233 21049 33514 NC_000014.9 scf7180000172807 99.52 True fake: scaffold gap size wrong estimation (local) 93581763 93584757 33974 36968 NC_000014.9 scf7180000172807 99.87 True fake: scaffold gap size wrong estimation (local) 93584951 93588514 37048 40727 NC_000014.9 scf7180000172807 99.92 True fake: scaffold gap size wrong estimation (local) 93588752 93592194 40981 44423 NC_000014.9 scf7180000172807 99.97 True fake: scaffold gap size wrong estimation (local) 93592446 93596377 44628 48559 NC_000014.9 scf7180000172807 97.59 True fake: scaffold gap size wrong estimation (local) 93596601 93598610 48771 50778 NC_000014.9 scf7180000172807 99.8 True fake: scaffold gap size wrong estimation (local) 93598755 93610613 50876 62773 NC_000014.9 scf7180000172807 99.52 True fake: scaffold gap size wrong estimation (local) 93610674 93613427 62864 65618 NC_000014.9 scf7180000172807 99.85 True fake: scaffold gap size wrong estimation (local) 93613687 93614440 65850 66618 NC_000014.9 scf7180000172807 99.47 True fake: scaffold gap size wrong estimation (local) 93615752 93616376 67807 68431 NC_000014.9 scf7180000172807 99.84 True fake: scaffold gap size wrong estimation (local) 93616482 93642170 68537 94261 NC_000014.9 scf7180000172807 99.73 True fake: scaffold gap size wrong estimation (local) 93642442 93651913 94470 103941 NC_000014.9 scf7180000172807 99.89 True fake: scaffold gap size wrong estimation (local) 93652035 93657369 104027 109304 NC_000014.9 scf7180000172807 98.64 True fake: scaffold gap size wrong estimation (local) 93657549 93660514 109408 112373 NC_000014.9 scf7180000172807 99.97 True fake: scaffold gap size wrong estimation (local) 93660804 93671521 112553 123370 NC_000014.9 scf7180000172807 96.98 True fake: scaffold gap size wrong estimation (local) 93671697 93677699 123512 129611 NC_000014.9 scf7180000172807 98.62 True fake: scaffold gap size wrong estimation (local) 93677921 93689494 129867 141426 NC_000014.9 scf7180000172807 99.68 True fake: scaffold gap size wrong estimation (local) 93689691 93698480 141556 150373 NC_000014.9 scf7180000172807 99.58 True fake: scaffold gap size wrong estimation (local) 93698697 93739125 150488 190894 NC_000014.9 scf7180000172807 98.14 True fake: scaffold gap size wrong estimation (local) 93739325 93739857 191175 191707 NC_000014.9 scf7180000172807 99.62 True fake: scaffold gap size wrong estimation (local) 93740097 93758373 191865 210147 NC_000014.9 scf7180000172807 99.86 True fake: scaffold gap size wrong estimation (local) 93758601 93777385 210324 229024 NC_000014.9 scf7180000172807 99.31 True fake: scaffold gap size wrong estimation (local) 93777584 93782010 229163 233620 NC_000014.9 scf7180000172807 99.28 True fake: scaffold gap size wrong estimation (local) 93782205 93795152 233778 246763 NC_000014.9 scf7180000172807 99.65 True fake: scaffold gap size wrong estimation (local) 93795443 93804312 247044 255913 NC_000014.9 scf7180000172807 99.92 True fake: scaffold gap size wrong estimation (local) 93804569 93820336 256146 271932 NC_000014.9 scf7180000172807 99.91 True fake: scaffold gap size wrong estimation (local) 93820599 93826627 272146 278193 NC_000014.9 scf7180000172807 99.48 True fake: scaffold gap size wrong estimation (local) 93826770 93828101 278321 279654 NC_000014.9 scf7180000172807 99.55 True indel: indel (<= 5bp) 93828203 93831810 279754 283365 NC_000014.9 scf7180000172807 99.81 True fake: scaffold gap size wrong estimation (local) 93831959 93836656 283498 288195 NC_000014.9 scf7180000172807 99.91 True fake: scaffold gap size wrong estimation (local) 93836852 93839214 290018 292380 NC_000014.9 scf7180000172807 99.92 True fake: scaffold gap size wrong estimation (local) 93839215 93844244 292395 297424 NC_000014.9 scf7180000172807 99.76 True fake: scaffold gap size wrong estimation (local) 93845031 93846462 298280 299701 NC_000014.9 scf7180000172807 99.09 True CONTIG scf7180000172807 299701 misassembled 105902737 105920933 1 17993 NC_000014.9 scf7180000172808 98.86 True fake: scaffold gap size wrong estimation (local) 105921091 105930907 18170 28103 NC_000014.9 scf7180000172808 98.96 True fake: scaffold gap size wrong estimation (local) 105931602 105935535 28929 32862 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 105935705 105936293 32969 33557 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 105936966 105939579 34762 37375 NC_000014.9 scf7180000172808 99.58 True fake: scaffold gap size wrong estimation (local) 105939705 105942636 37637 40568 NC_000014.9 scf7180000172808 99.83 True fake: scaffold gap size wrong estimation (local) 105943161 105947311 41126 45271 NC_000014.9 scf7180000172808 99.39 True fake: scaffold gap size wrong estimation (local) 105947893 105950387 45834 48236 NC_000014.9 scf7180000172808 95.8 True fake: scaffold gap size wrong estimation (local) 105950495 105952638 48427 50593 NC_000014.9 scf7180000172808 99.86 True fake: scaffold gap size wrong estimation (local) 105952832 105955921 51593 54682 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 105964151 105966124 62633 64606 NC_000014.9 scf7180000172808 99.24 True fake: scaffold gap size wrong estimation (local) 105966972 105985689 65391 84092 NC_000014.9 scf7180000172808 99.9 True relocation, scaffold gap is present, inconsistency = -32599621 73387157 73387656 85181 85680 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 73389553 73390645 87626 88718 NC_000014.9 scf7180000172808 100.0 True relocation, scaffold gap is present, inconsistency = 32596303 105986969 105989055 88739 90825 NC_000014.9 scf7180000172808 99.66 True fake: scaffold gap size wrong estimation (local) 105989319 105997993 91070 99621 NC_000014.9 scf7180000172808 98.31 True fake: scaffold gap size wrong estimation (local) 105998209 105999432 99735 100958 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 106001632 106002575 102576 103519 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 106620616 106621150 104084 104625 NC_000014.9 scf7180000172808 95.76 True fake: not a misassembly (possible transposable element) 106003623 106005898 105155 107430 NC_000014.9 scf7180000172808 99.82 True indel: indel (> 5bp) 106006362 106008349 107920 109907 NC_000014.9 scf7180000172808 99.45 True local misassembly 106009286 106010525 110518 111757 NC_000014.9 scf7180000172808 98.47 True fake: scaffold gap size wrong estimation (local) 106012280 106012840 113800 114360 NC_000014.9 scf7180000172808 99.11 True local misassembly 106012969 106014249 114361 115641 NC_000014.9 scf7180000172808 98.2 True fake: scaffold gap size wrong estimation (local) 106014990 106017156 116297 118479 NC_000014.9 scf7180000172808 99.95 True fake: scaffold gap size wrong estimation (extensive) 106027211 106029633 119146 121504 NC_000014.9 scf7180000172808 97.21 True fake: scaffold gap size wrong estimation (local) 106029876 106030506 121868 122498 NC_000014.9 scf7180000172808 100.0 True indel: indel (> 5bp) 106030535 106031352 122499 123316 NC_000014.9 scf7180000172808 97.31 True fake: scaffold gap size wrong estimation (local) 106031927 106035044 123792 126909 NC_000014.9 scf7180000172808 99.49 True fake: scaffold gap size wrong estimation (local) 106035486 106038015 127755 130284 NC_000014.9 scf7180000172808 99.6 True fake: scaffold gap size wrong estimation (local) 106038340 106040270 130584 132514 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 106040753 106042118 133490 134855 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106043152 106044206 135855 136909 NC_000014.9 scf7180000172808 99.72 True relocation, scaffold gap is present, inconsistency = 646729 106693258 106693806 139232 139780 NC_000014.9 scf7180000172808 99.82 True fake: scaffold gap size wrong estimation (local) 106694174 106705780 140554 152130 NC_000014.9 scf7180000172808 99.22 True fake: scaffold gap size wrong estimation (local) 106706699 106710503 153630 157434 NC_000014.9 scf7180000172808 99.82 True fake: scaffold gap size wrong estimation (local) 106710993 106714226 157847 161079 NC_000014.9 scf7180000172808 99.51 True fake: scaffold gap size wrong estimation (local) 106714324 106717121 161355 164152 NC_000014.9 scf7180000172808 99.39 True fake: scaffold gap size wrong estimation (local) 106717856 106719103 165361 166607 NC_000014.9 scf7180000172808 97.92 True relocation, scaffold gap is present, inconsistency = -507800 106211354 106212882 166658 168186 NC_000014.9 scf7180000172808 99.54 True fake: scaffold gap size wrong estimation (local) 106213242 106216545 168554 171869 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 106217980 106218822 173199 174040 NC_000014.9 scf7180000172808 99.53 True relocation, scaffold gap is present, inconsistency = 549739 106768612 106769616 174091 175094 NC_000014.9 scf7180000172808 99.5 True local misassembly 106767677 106769011 175227 176561 NC_000014.9 scf7180000172808 99.7 True fake: not a misassembly (possible transposable element) 106251074 106251867 176867 177662 NC_000014.9 scf7180000172808 99.75 True fake: not a misassembly (possible transposable element) 106770823 106772780 177713 179670 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 106773752 106774454 181412 182114 NC_000014.9 scf7180000172808 99.86 True relocation, scaffold gap is present, inconsistency = -522637 106251868 106256643 182165 186940 NC_000014.9 scf7180000172808 99.83 True fake: scaffold gap size wrong estimation (local) 106256644 106257211 187109 187674 NC_000014.9 scf7180000172808 98.59 True fake: scaffold gap size wrong estimation (local) 106257350 106258458 187761 188869 NC_000014.9 scf7180000172808 96.33 True relocation, scaffold gap is present, inconsistency = 518051 106777683 106778896 190043 191254 NC_000014.9 scf7180000172808 99.42 True fake: scaffold gap size wrong estimation (local) 106779424 106780687 191496 192759 NC_000014.9 scf7180000172808 99.68 True fake: scaffold gap size wrong estimation (local) 106780888 106782873 193137 195122 NC_000014.9 scf7180000172808 99.8 True fake: scaffold gap size wrong estimation (local) 106783000 106787951 195223 200175 NC_000014.9 scf7180000172808 99.78 True indel: stretch of mismatches 106788061 106795015 200285 207239 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 106795537 106796852 207736 209051 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106798302 106802692 210375 214765 NC_000014.9 scf7180000172808 99.86 True indel: indel (> 5bp) 106802917 106805905 214984 217972 NC_000014.9 scf7180000172808 99.9 True indel: indel (> 5bp) 106805920 106806794 217973 218847 NC_000014.9 scf7180000172808 99.43 True fake: scaffold gap size wrong estimation (local) 106806795 106810501 219420 223126 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 106810704 106819094 223312 231703 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 106819763 106831068 232285 243377 NC_000014.9 scf7180000172808 97.84 True fake: scaffold gap size wrong estimation (local) 106831335 106855455 243650 267768 NC_000014.9 scf7180000172808 99.93 True fake: scaffold gap size wrong estimation (local) 106856078 106857750 268809 270481 NC_000014.9 scf7180000172808 99.94 True local misassembly 106855389 106856095 270502 271208 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106858345 106863372 272118 277146 NC_000014.9 scf7180000172808 99.94 True relocation, scaffold gap is present, inconsistency = -258811 106608910 106610461 281495 283046 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 106611168 106613163 283795 285788 NC_000014.9 scf7180000172808 98.95 True fake: scaffold gap size wrong estimation (local) 106613588 106615591 286291 288296 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 106616879 106618131 289575 290827 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 106619226 106626685 292025 299484 NC_000014.9 scf7180000172808 99.87 True relocation, scaffold gap is present, inconsistency = 10912 106640569 106641974 302456 303861 NC_000014.9 scf7180000172808 98.79 True fake: scaffold gap size wrong estimation (local) 106643418 106644811 305263 306656 NC_000014.9 scf7180000172808 99.78 True fake: scaffold gap size wrong estimation (local) 106645043 106650424 306787 312169 NC_000014.9 scf7180000172808 99.87 True indel: indel (<= 5bp) 106650558 106651497 312302 313241 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 106651623 106653158 313380 314915 NC_000014.9 scf7180000172808 99.93 True local misassembly 106653404 106654065 314916 315577 NC_000014.9 scf7180000172808 96.83 True indel: indel (<= 5bp) 106654177 106657923 315694 319440 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106658140 106661617 319666 323143 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106661618 106663944 323480 325806 NC_000014.9 scf7180000172808 100.0 True local misassembly 106664177 106666204 325807 327834 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 106666296 106674998 328166 336873 NC_000014.9 scf7180000172808 99.49 True relocation, scaffold gap is present, inconsistency = -56083140 50592945 50594311 337960 339326 NC_000014.9 scf7180000172808 99.93 True relocation, inconsistency = 55817486 106411798 106413095 339327 340619 NC_000014.9 scf7180000172808 99.47 True fake: not a misassembly (possible transposable element) 106137201 106138258 340620 341678 NC_000014.9 scf7180000172808 98.79 True fake: not a misassembly (possible transposable element) 106414334 106421929 343718 351204 NC_000014.9 scf7180000172808 97.97 True relocation, inconsistency = -72426 106349504 106362600 351205 364448 NC_000014.9 scf7180000172808 97.12 True fake: scaffold gap size wrong estimation (local) 106363090 106365732 365075 367717 NC_000014.9 scf7180000172808 99.47 True fake: scaffold gap size wrong estimation (local) 106365733 106366481 367965 368713 NC_000014.9 scf7180000172808 99.73 True fake: scaffold gap size wrong estimation (local) 106367454 106368109 369590 370245 NC_000014.9 scf7180000172808 100.0 True relocation, scaffold gap is present, inconsistency = -53753763 52615477 52617464 371376 373362 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 52617591 52625418 373450 381148 NC_000014.9 scf7180000172808 97.67 True fake: scaffold gap size wrong estimation (local) 52625770 52627602 381498 383330 NC_000014.9 scf7180000172808 99.67 True fake: scaffold gap size wrong estimation (local) 52627785 52638002 383462 393659 NC_000014.9 scf7180000172808 99.76 True fake: scaffold gap size wrong estimation (local) 52639646 52641343 395114 396811 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 52641523 52646972 396975 402361 NC_000014.9 scf7180000172808 98.62 True fake: scaffold gap size wrong estimation (local) 52647272 52655114 402633 410565 NC_000014.9 scf7180000172808 98.82 True fake: scaffold gap size wrong estimation (local) 52655350 52656467 410824 411941 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52656712 52664782 412121 420133 NC_000014.9 scf7180000172808 99.15 True fake: scaffold gap size wrong estimation (local) 52665286 52666696 420671 422082 NC_000014.9 scf7180000172808 99.86 True fake: scaffold gap size wrong estimation (local) 52666866 52675206 422134 430411 NC_000014.9 scf7180000172808 97.18 True fake: scaffold gap size wrong estimation (local) 52675359 52678087 430622 433306 NC_000014.9 scf7180000172808 97.85 True fake: scaffold gap size wrong estimation (local) 52678146 52680009 433409 435302 NC_000014.9 scf7180000172808 98.56 True fake: scaffold gap size wrong estimation (local) 52680101 52681340 435422 436661 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 52681506 52682107 436823 437424 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52682108 52682648 437510 438050 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52682802 52686677 438187 442026 NC_000014.9 scf7180000172808 98.89 True fake: scaffold gap size wrong estimation (local) 52686784 52690525 442179 445833 NC_000014.9 scf7180000172808 97.43 True fake: scaffold gap size wrong estimation (local) 52690649 52697021 445958 452321 NC_000014.9 scf7180000172808 99.48 True fake: scaffold gap size wrong estimation (local) 52697768 52698620 452954 453806 NC_000014.9 scf7180000172808 97.42 True fake: scaffold gap size wrong estimation (local) 52698838 52699352 454513 455026 NC_000014.9 scf7180000172808 98.64 True fake: scaffold gap size wrong estimation (local) 52700056 52701628 455380 456952 NC_000014.9 scf7180000172808 99.87 True fake: scaffold gap size wrong estimation (local) 52703043 52704312 458331 459600 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 52704484 52704991 459752 460259 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52705265 52705792 460621 461148 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52706031 52710190 461243 465592 NC_000014.9 scf7180000172808 96.03 True fake: scaffold gap size wrong estimation (local) 52710324 52712885 465617 468178 NC_000014.9 scf7180000172808 99.96 True fake: scaffold gap size wrong estimation (local) 52713028 52714765 468261 469998 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 52714890 52716530 470132 471793 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 52716740 52717329 471965 472554 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52717596 52720129 472932 475355 NC_000014.9 scf7180000172808 95.45 True fake: scaffold gap size wrong estimation (local) 52720397 52726686 475536 481859 NC_000014.9 scf7180000172808 99.65 True fake: scaffold gap size wrong estimation (local) 52727249 52729278 482409 484438 NC_000014.9 scf7180000172808 95.17 True fake: scaffold gap size wrong estimation (local) 52729279 52731435 484499 486655 NC_000014.9 scf7180000172808 99.95 True fake: scaffold gap size wrong estimation (local) 52732804 52734287 487893 489376 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52734288 52734848 489685 490245 NC_000014.9 scf7180000172808 99.64 True local misassembly 52735027 52737900 490246 493119 NC_000014.9 scf7180000172808 99.16 True fake: scaffold gap size wrong estimation (local) 52738049 52739631 493237 494819 NC_000014.9 scf7180000172808 99.81 True local misassembly 52739835 52741207 494820 496192 NC_000014.9 scf7180000172808 97.09 True fake: scaffold gap size wrong estimation (local) 52741613 52742913 496753 498053 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 52743538 52745136 498476 500224 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52745409 52751966 500411 506967 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 52753065 52753896 508046 508870 NC_000014.9 scf7180000172808 98.65 True fake: scaffold gap size wrong estimation (local) 52754168 52755138 509169 510139 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52755348 52756677 510278 511607 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 52756829 52758612 511713 513496 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52758789 52761131 513679 516021 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 52761975 52764037 516769 518757 NC_000014.9 scf7180000172808 96.28 True fake: scaffold gap size wrong estimation (local) 52764238 52773333 519017 528072 NC_000014.9 scf7180000172808 99.49 True fake: scaffold gap size wrong estimation (local) 52773619 52776657 528326 531371 NC_000014.9 scf7180000172808 99.83 True fake: scaffold gap size wrong estimation (local) 52776809 52784944 531516 539676 NC_000014.9 scf7180000172808 99.95 True fake: scaffold gap size wrong estimation (local) 52786022 52793786 540656 548385 NC_000014.9 scf7180000172808 99.29 True fake: scaffold gap size wrong estimation (local) 52795012 52796127 549642 550757 NC_000014.9 scf7180000172808 99.73 True fake: scaffold gap size wrong estimation (local) 52797024 52804324 551587 558897 NC_000014.9 scf7180000172808 98.04 True fake: scaffold gap size wrong estimation (local) 52804644 52806546 559162 561064 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 52807180 52807806 561774 562400 NC_000014.9 scf7180000172808 99.84 True local misassembly 52807945 52809112 562401 563568 NC_000014.9 scf7180000172808 96.92 True fake: scaffold gap size wrong estimation (local) 52809278 52810412 563910 565044 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 52810750 52811766 565310 566326 NC_000014.9 scf7180000172808 99.8 True fake: scaffold gap size wrong estimation (local) 52811773 52812421 566474 567122 NC_000014.9 scf7180000172808 99.69 True fake: scaffold gap size wrong estimation (local) 52813562 52816062 567980 570371 NC_000014.9 scf7180000172808 95.61 True fake: scaffold gap size wrong estimation (local) 52816407 52818553 570683 572829 NC_000014.9 scf7180000172808 99.86 True fake: not a misassembly (possible transposable element) 103691980 103694355 575230 572855 NC_000014.9 scf7180000172808 99.87 True fake: not a misassembly (possible transposable element) 52818829 52819759 577889 578819 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 52823405 52824080 578848 579523 NC_000014.9 scf7180000172808 99.85 True local misassembly 52824322 52825562 579524 580764 NC_000014.9 scf7180000172808 98.39 True fake: scaffold gap size wrong estimation (local) 52825842 52826407 580989 581554 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52826784 52828444 581923 583577 NC_000014.9 scf7180000172808 99.57 True fake: scaffold gap size wrong estimation (local) 52828644 52830365 583830 585551 NC_000014.9 scf7180000172808 99.54 True fake: scaffold gap size wrong estimation (local) 52831166 52832534 586377 587745 NC_000014.9 scf7180000172808 99.85 True local misassembly 52832901 52833583 587918 588600 NC_000014.9 scf7180000172808 96.78 True fake: scaffold gap size wrong estimation (local) 52833868 52834408 589444 589984 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52834901 52836178 590450 591727 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52837401 52838481 593084 594170 NC_000014.9 scf7180000172808 99.36 True fake: scaffold gap size wrong estimation (local) 52839098 52840563 595285 596712 NC_000014.9 scf7180000172808 97.03 True fake: scaffold gap size wrong estimation (local) 52840640 52841631 596808 597799 NC_000014.9 scf7180000172808 99.9 True fake: scaffold gap size wrong estimation (local) 52841884 52842592 598019 598727 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52843279 52844064 599421 600206 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52844826 52845623 600829 601626 NC_000014.9 scf7180000172808 99.5 True fake: scaffold gap size wrong estimation (local) 52846502 52847758 602474 603730 NC_000014.9 scf7180000172808 95.31 True fake: scaffold gap size wrong estimation (local) 52848232 52849513 604382 605663 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 52850235 52850878 605976 606619 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 52851117 52852180 607059 608122 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 52852447 52854549 608309 610411 NC_000014.9 scf7180000172808 99.81 True fake: scaffold gap size wrong estimation (local) 52854643 52859845 610517 615635 NC_000014.9 scf7180000172808 97.98 True fake: scaffold gap size wrong estimation (local) 52860031 52862240 615805 618014 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 52862341 52870264 618107 626201 NC_000014.9 scf7180000172808 98.1 True fake: scaffold gap size wrong estimation (local) 52870446 52884483 626616 640552 NC_000014.9 scf7180000172808 98.82 True fake: scaffold gap size wrong estimation (local) 52885333 52890126 641327 646111 NC_000014.9 scf7180000172808 99.69 True fake: scaffold gap size wrong estimation (local) 52890849 52892181 646844 648176 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 52892463 52897761 648433 653623 NC_000014.9 scf7180000172808 97.45 True relocation, inconsistency = -20581242 32316520 32319247 653624 656313 NC_000014.9 scf7180000172808 98.52 True fake: scaffold gap size wrong estimation (local) 32319479 32326199 656635 663229 NC_000014.9 scf7180000172808 98.05 True fake: scaffold gap size wrong estimation (local) 32326648 32343518 663753 680635 NC_000014.9 scf7180000172808 99.96 True fake: scaffold gap size wrong estimation (local) 32344917 32346602 681967 683652 NC_000014.9 scf7180000172808 99.64 True fake: scaffold gap size wrong estimation (local) 32346781 32348411 683851 685481 NC_000014.9 scf7180000172808 99.63 True fake: scaffold gap size wrong estimation (local) 32348630 32353298 685577 690200 NC_000014.9 scf7180000172808 98.86 True fake: scaffold gap size wrong estimation (local) 32354205 32378925 691040 715862 NC_000014.9 scf7180000172808 98.58 True fake: scaffold gap size wrong estimation (local) 32379140 32405704 716003 742400 NC_000014.9 scf7180000172808 99.07 True fake: scaffold gap size wrong estimation (local) 32405760 32406286 742487 743013 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32406377 32416647 743059 753253 NC_000014.9 scf7180000172808 98.2 True fake: scaffold gap size wrong estimation (local) 32416745 32424932 753366 761565 NC_000014.9 scf7180000172808 99.77 True fake: scaffold gap size wrong estimation (local) 32425107 32430852 761648 767393 NC_000014.9 scf7180000172808 99.76 True fake: scaffold gap size wrong estimation (local) 32431105 32431636 767490 768021 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32431784 32445463 768183 781814 NC_000014.9 scf7180000172808 99.18 True fake: not a misassembly (possible transposable element) 102023660 102024710 782884 781835 NC_000014.9 scf7180000172808 99.82 True fake: not a misassembly (possible transposable element) 32445584 32453580 782885 790817 NC_000014.9 scf7180000172808 98.91 True fake: scaffold gap size wrong estimation (local) 32453861 32460481 791141 797559 NC_000014.9 scf7180000172808 96.23 True indel: indel (<= 5bp) 32460725 32462900 797801 799977 NC_000014.9 scf7180000172808 99.45 True local misassembly 32464183 32465251 801235 802302 NC_000014.9 scf7180000172808 98.6 True fake: scaffold gap size wrong estimation (local) 32466740 32475692 803954 812785 NC_000014.9 scf7180000172808 98.41 True fake: scaffold gap size wrong estimation (local) 32475939 32483539 812900 820498 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 32483699 32485169 820708 822178 NC_000014.9 scf7180000172808 99.05 True fake: scaffold gap size wrong estimation (local) 32486710 32487371 824173 824834 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32487751 32508874 824979 846254 NC_000014.9 scf7180000172808 99.16 True fake: scaffold gap size wrong estimation (local) 32509248 32510381 846631 847764 NC_000014.9 scf7180000172808 99.65 True fake: scaffold gap size wrong estimation (local) 32510466 32511384 847856 848774 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32511613 32518686 849014 856314 NC_000014.9 scf7180000172808 97.26 True fake: scaffold gap size wrong estimation (local) 32518951 32520048 856500 857609 NC_000014.9 scf7180000172808 96.97 True fake: scaffold gap size wrong estimation (local) 32523279 32529964 861336 868716 NC_000014.9 scf7180000172808 99.71 True fake: scaffold gap size wrong estimation (local) 32530208 32540155 868833 878761 NC_000014.9 scf7180000172808 99.58 True fake: scaffold gap size wrong estimation (local) 32540363 32548099 878847 886580 NC_000014.9 scf7180000172808 99.92 True local misassembly 32550576 32551319 886581 887324 NC_000014.9 scf7180000172808 98.71 True local misassembly 32548325 32551319 887357 890347 NC_000014.9 scf7180000172808 99.87 True fake: scaffold gap size wrong estimation (local) 32551909 32553179 890883 892153 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 32553329 32562600 892319 901621 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 32562676 32570137 901852 909313 NC_000014.9 scf7180000172808 99.96 True fake: scaffold gap size wrong estimation (local) 32570370 32580579 909502 919710 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 32583233 32614980 922934 954619 NC_000014.9 scf7180000172808 98.34 True fake: scaffold gap size wrong estimation (local) 32615875 32643325 955455 982931 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 32643579 32653665 983138 993361 NC_000014.9 scf7180000172808 98.79 True fake: scaffold gap size wrong estimation (local) 32654698 32669919 994282 1009532 NC_000014.9 scf7180000172808 99.93 True fake: scaffold gap size wrong estimation (local) 32670097 32685501 1009584 1024804 NC_000014.9 scf7180000172808 98.65 True fake: scaffold gap size wrong estimation (local) 32685780 32694107 1025478 1033777 NC_000014.9 scf7180000172808 99.57 True fake: scaffold gap size wrong estimation (local) 32694276 32750756 1033874 1090389 NC_000014.9 scf7180000172808 99.78 True fake: scaffold gap size wrong estimation (local) 32750993 32752872 1090532 1092428 NC_000014.9 scf7180000172808 99.95 True fake: scaffold gap size wrong estimation (local) 32753063 32764949 1092530 1104349 NC_000014.9 scf7180000172808 99.13 True fake: scaffold gap size wrong estimation (local) 32765204 32769045 1104524 1108365 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 32769217 32774772 1108447 1114000 NC_000014.9 scf7180000172808 99.87 True fake: scaffold gap size wrong estimation (local) 32775495 32781916 1114678 1121095 NC_000014.9 scf7180000172808 99.67 True fake: scaffold gap size wrong estimation (local) 32782091 32786297 1121201 1125408 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 32786596 32790635 1125585 1129644 NC_000014.9 scf7180000172808 99.63 True fake: scaffold gap size wrong estimation (local) 32792736 32795211 1131444 1133919 NC_000014.9 scf7180000172808 99.6 True fake: scaffold gap size wrong estimation (local) 32795849 32797050 1134404 1135605 NC_000014.9 scf7180000172808 99.75 True fake: scaffold gap size wrong estimation (local) 32797168 32798022 1135736 1136586 NC_000014.9 scf7180000172808 99.42 True fake: scaffold gap size wrong estimation (local) 32798197 32804622 1136759 1143137 NC_000014.9 scf7180000172808 98.34 True fake: scaffold gap size wrong estimation (local) 32804772 32810997 1143255 1149517 NC_000014.9 scf7180000172808 99.66 True fake: scaffold gap size wrong estimation (local) 32811088 32836469 1149621 1174836 NC_000014.9 scf7180000172808 99.06 True fake: not a misassembly (possible transposable element) 34272568 34273197 1174837 1175466 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 32836253 32837972 1176440 1178159 NC_000014.9 scf7180000172808 99.83 True local misassembly 32838216 32841946 1178160 1181890 NC_000014.9 scf7180000172808 98.47 True local misassembly 32842051 32842705 1181891 1182545 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 32842958 32844924 1183619 1185585 NC_000014.9 scf7180000172808 99.95 True indel: indel (<= 5bp) 32844929 32848932 1185586 1189589 NC_000014.9 scf7180000172808 99.93 True fake: scaffold gap size wrong estimation (local) 32848933 32850717 1189717 1191501 NC_000014.9 scf7180000172808 99.5 True fake: scaffold gap size wrong estimation (local) 32850718 32851249 1191670 1192201 NC_000014.9 scf7180000172808 99.81 True fake: scaffold gap size wrong estimation (local) 32857090 32857693 1197855 1198458 NC_000014.9 scf7180000172808 99.34 True fake: scaffold gap size wrong estimation (local) 32857816 32862259 1198822 1203197 NC_000014.9 scf7180000172808 98.2 True fake: scaffold gap size wrong estimation (local) 32862452 32871130 1203376 1211972 NC_000014.9 scf7180000172808 98.9 True fake: not a misassembly (possible transposable element) 52395460 52396538 1212239 1213317 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 32871972 32873016 1213428 1214472 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32873119 32874773 1214606 1216260 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 32875052 32876216 1216332 1217496 NC_000014.9 scf7180000172808 99.57 True fake: scaffold gap size wrong estimation (local) 32876509 32878293 1217973 1219750 NC_000014.9 scf7180000172808 98.77 True fake: scaffold gap size wrong estimation (local) 32878803 32907014 1220236 1248456 NC_000014.9 scf7180000172808 99.8 True fake: scaffold gap size wrong estimation (local) 32907285 32922386 1248670 1263622 NC_000014.9 scf7180000172808 98.65 True fake: scaffold gap size wrong estimation (local) 32922644 32928481 1263858 1269658 NC_000014.9 scf7180000172808 99.09 True fake: scaffold gap size wrong estimation (local) 32928601 32938476 1269754 1279653 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 32939141 32941202 1280271 1282353 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 32941327 32957435 1282553 1298631 NC_000014.9 scf7180000172808 99.72 True fake: scaffold gap size wrong estimation (local) 32957641 32961157 1298713 1302247 NC_000014.9 scf7180000172808 99.8 True fake: scaffold gap size wrong estimation (local) 32961418 32962540 1302472 1303594 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 32962866 32968773 1303911 1309740 NC_000014.9 scf7180000172808 97.14 True fake: scaffold gap size wrong estimation (local) 32968820 32971105 1310180 1312465 NC_000014.9 scf7180000172808 99.78 True fake: not a misassembly (possible transposable element) 91500354 91501637 1313848 1312565 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 32971360 32989370 1313872 1331616 NC_000014.9 scf7180000172808 98.03 True fake: scaffold gap size wrong estimation (local) 32989607 32997642 1331767 1339738 NC_000014.9 scf7180000172808 98.94 True fake: scaffold gap size wrong estimation (local) 32999438 33004807 1341515 1346884 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 33004986 33022431 1347133 1365148 NC_000014.9 scf7180000172808 96.31 True fake: scaffold gap size wrong estimation (local) 33022683 33024156 1365360 1366833 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33024445 33046749 1367006 1389489 NC_000014.9 scf7180000172808 99.36 True fake: scaffold gap size wrong estimation (local) 33046925 33051035 1389615 1393725 NC_000014.9 scf7180000172808 99.93 True fake: scaffold gap size wrong estimation (local) 33051278 33051853 1393804 1394379 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33052032 33054628 1394651 1397247 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33054676 33074453 1397350 1417102 NC_000014.9 scf7180000172808 99.54 True fake: scaffold gap size wrong estimation (local) 33074604 33079356 1417201 1421942 NC_000014.9 scf7180000172808 99.39 True fake: scaffold gap size wrong estimation (local) 33079629 33080167 1422161 1422699 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33080381 33088269 1422901 1430786 NC_000014.9 scf7180000172808 99.86 True fake: scaffold gap size wrong estimation (local) 33088844 33089432 1431335 1431923 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33089886 33090562 1432556 1433232 NC_000014.9 scf7180000172808 99.56 True fake: scaffold gap size wrong estimation (local) 33094570 33095687 1437141 1438258 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 33095959 33111848 1438528 1454333 NC_000014.9 scf7180000172808 99.26 True fake: scaffold gap size wrong estimation (local) 33114005 33138054 1456002 1479962 NC_000014.9 scf7180000172808 99.08 True fake: scaffold gap size wrong estimation (local) 33138169 33159568 1480439 1502072 NC_000014.9 scf7180000172808 97.97 True fake: scaffold gap size wrong estimation (local) 33159829 33169319 1502381 1511780 NC_000014.9 scf7180000172808 98.76 True fake: scaffold gap size wrong estimation (local) 33169541 33177111 1511963 1519532 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 33177273 33178074 1519640 1520441 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33178267 33180576 1520648 1522957 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 33180824 33183169 1523180 1525525 NC_000014.9 scf7180000172808 99.87 True fake: scaffold gap size wrong estimation (local) 33183455 33202157 1525803 1544363 NC_000014.9 scf7180000172808 98.98 True fake: scaffold gap size wrong estimation (local) 33203663 33246295 1545439 1588301 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 33246528 33263164 1588504 1605026 NC_000014.9 scf7180000172808 99.06 True fake: scaffold gap size wrong estimation (local) 33263674 33325642 1605679 1667418 NC_000014.9 scf7180000172808 99.34 True fake: scaffold gap size wrong estimation (local) 33326399 33328445 1668023 1670069 NC_000014.9 scf7180000172808 99.9 True fake: scaffold gap size wrong estimation (local) 33328614 33340294 1670233 1681910 NC_000014.9 scf7180000172808 99.58 True fake: scaffold gap size wrong estimation (local) 33340470 33346014 1682040 1687616 NC_000014.9 scf7180000172808 99.64 True fake: scaffold gap size wrong estimation (local) 33346265 33434272 1687833 1775843 NC_000014.9 scf7180000172808 99.67 True fake: scaffold gap size wrong estimation (local) 33434509 33439856 1776008 1781355 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 33440035 33440633 1781493 1782090 NC_000014.9 scf7180000172808 99.83 True fake: scaffold gap size wrong estimation (local) 33441910 33446218 1783254 1787590 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 33446449 33452520 1787753 1793824 NC_000014.9 scf7180000172808 99.9 True relocation, inconsistency = 14712931 48165452 48170501 1798859 1793825 NC_000014.9 scf7180000172808 99.55 True fake: scaffold gap size wrong estimation (local) 48149636 48165295 1814631 1798974 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 48142023 48149573 1822466 1814917 NC_000014.9 scf7180000172808 99.96 True fake: scaffold gap size wrong estimation (local) 48135243 48141734 1829194 1822616 NC_000014.9 scf7180000172808 99.48 True fake: scaffold gap size wrong estimation (local) 48131854 48134670 1832652 1829837 NC_000014.9 scf7180000172808 99.86 True fake: scaffold gap size wrong estimation (local) 48128236 48131539 1836159 1832856 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 48119059 48127783 1845236 1836512 NC_000014.9 scf7180000172808 99.95 True fake: scaffold gap size wrong estimation (local) 48100834 48118865 1863646 1845694 NC_000014.9 scf7180000172808 99.16 True indel: indel (<= 5bp) 48100027 48100562 1864452 1863917 NC_000014.9 scf7180000172808 99.81 True fake: scaffold gap size wrong estimation (local) 48089680 48099239 1875006 1865605 NC_000014.9 scf7180000172808 98.17 True fake: scaffold gap size wrong estimation (local) 48081586 48089497 1883014 1875103 NC_000014.9 scf7180000172808 99.77 True fake: scaffold gap size wrong estimation (local) 48070739 48081464 1894034 1883109 NC_000014.9 scf7180000172808 98.09 True fake: scaffold gap size wrong estimation (local) 48045007 48070067 1919648 1894649 NC_000014.9 scf7180000172808 99.47 True fake: scaffold gap size wrong estimation (local) 48033737 48044705 1930834 1919858 NC_000014.9 scf7180000172808 99.8 True fake: scaffold gap size wrong estimation (local) 48018825 48032662 1945872 1932025 NC_000014.9 scf7180000172808 99.74 True fake: scaffold gap size wrong estimation (local) 48017942 48018480 1946567 1946012 NC_000014.9 scf7180000172808 99.01 True fake: scaffold gap size wrong estimation (local) 48016942 48017452 1947634 1947124 NC_000014.9 scf7180000172808 99.41 True fake: scaffold gap size wrong estimation (local) 47995379 48016606 1969052 1947911 NC_000014.9 scf7180000172808 99.46 True fake: not a misassembly (possible transposable element) 24683971 24685510 1970612 1969073 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 47987041 47995038 1978650 1970613 NC_000014.9 scf7180000172808 99.66 True fake: scaffold gap size wrong estimation (local) 47971897 47986774 1993701 1978824 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 47970127 47971711 1995366 1993791 NC_000014.9 scf7180000172808 99.36 True fake: scaffold gap size wrong estimation (local) 47953899 47969127 2011466 1996270 NC_000014.9 scf7180000172808 99.17 True fake: scaffold gap size wrong estimation (local) 47946841 47953601 2018480 2011685 NC_000014.9 scf7180000172808 99.81 True fake: scaffold gap size wrong estimation (local) 47943318 47946649 2021884 2018560 NC_000014.9 scf7180000172808 99.34 True fake: scaffold gap size wrong estimation (local) 47935760 47936512 2028539 2027787 NC_000014.9 scf7180000172808 100.0 True local misassembly 47936514 47937470 2029516 2028560 NC_000014.9 scf7180000172808 99.9 True fake: scaffold gap size wrong estimation (local) 47930152 47934818 2035418 2030727 NC_000014.9 scf7180000172808 99.68 True fake: scaffold gap size wrong estimation (local) 47925889 47929983 2039662 2035568 NC_000014.9 scf7180000172808 99.71 True fake: scaffold gap size wrong estimation (local) 47910773 47924732 2054685 2040726 NC_000014.9 scf7180000172808 99.76 True fake: scaffold gap size wrong estimation (local) 47907107 47910491 2058226 2054843 NC_000014.9 scf7180000172808 99.82 True relocation, scaffold gap is present, inconsistency = 10672606 58583118 58583733 2058247 2058862 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 58585516 58588407 2060436 2063327 NC_000014.9 scf7180000172808 99.86 True relocation, scaffold gap is present, inconsistency = 10680778 47902854 47903450 2065205 2064615 NC_000014.9 scf7180000172808 95.64 True fake: scaffold gap size wrong estimation (local) 47894888 47901231 2073172 2066830 NC_000014.9 scf7180000172808 99.72 True fake: scaffold gap size wrong estimation (local) 47885744 47894530 2082287 2073525 NC_000014.9 scf7180000172808 99.46 True fake: scaffold gap size wrong estimation (local) 47831885 47885473 2135919 2082438 NC_000014.9 scf7180000172808 98.85 True fake: scaffold gap size wrong estimation (local) 47815864 47831610 2152360 2136106 NC_000014.9 scf7180000172808 96.89 True fake: scaffold gap size wrong estimation (local) 47811720 47815675 2156348 2152401 NC_000014.9 scf7180000172808 99.72 True fake: scaffold gap size wrong estimation (local) 47807071 47811593 2161084 2156564 NC_000014.9 scf7180000172808 99.78 True fake: scaffold gap size wrong estimation (local) 47800670 47806874 2167406 2161200 NC_000014.9 scf7180000172808 99.84 True fake: scaffold gap size wrong estimation (local) 47793918 47795026 2179141 2178023 NC_000014.9 scf7180000172808 99.73 True fake: scaffold gap size wrong estimation (local) 47786593 47793634 2186378 2179312 NC_000014.9 scf7180000172808 99.5 True fake: scaffold gap size wrong estimation (local) 47764410 47786400 2208263 2186520 NC_000014.9 scf7180000172808 98.66 True fake: scaffold gap size wrong estimation (local) 47760666 47764215 2211892 2208340 NC_000014.9 scf7180000172808 99.72 True fake: scaffold gap size wrong estimation (local) 47753793 47760448 2218691 2212037 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 47752225 47753558 2220281 2218948 NC_000014.9 scf7180000172808 99.85 True fake: scaffold gap size wrong estimation (local) 47749761 47752020 2222673 2220414 NC_000014.9 scf7180000172808 99.87 True fake: scaffold gap size wrong estimation (local) 47742073 47749335 2230397 2223156 NC_000014.9 scf7180000172808 99.61 True fake: scaffold gap size wrong estimation (local) 47727041 47741843 2245343 2230652 NC_000014.9 scf7180000172808 98.89 True relocation, inconsistency = 26539846 21184036 21187194 2248412 2245344 NC_000014.9 scf7180000172808 96.91 True fake: scaffold gap size wrong estimation (local) 21179057 21183155 2253505 2249308 NC_000014.9 scf7180000172808 96.83 True fake: scaffold gap size wrong estimation (local) 21177982 21178794 2254491 2253679 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 21172544 21177735 2259857 2254733 NC_000014.9 scf7180000172808 97.14 True fake: scaffold gap size wrong estimation (local) 21168612 21171949 2263679 2260331 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 21161547 21168446 2270735 2263840 NC_000014.9 scf7180000172808 99.71 True fake: scaffold gap size wrong estimation (local) 21159699 21161286 2272576 2270989 NC_000014.9 scf7180000172808 99.94 True fake: scaffold gap size wrong estimation (local) 21153934 21158542 2278269 2273663 NC_000014.9 scf7180000172808 99.61 True fake: scaffold gap size wrong estimation (local) 21147374 21153789 2284893 2278535 NC_000014.9 scf7180000172808 99.06 True fake: scaffold gap size wrong estimation (local) 21146228 21146956 2285755 2285027 NC_000014.9 scf7180000172808 99.73 True fake: scaffold gap size wrong estimation (local) 21141948 21146329 2290594 2286218 NC_000014.9 scf7180000172808 99.5 True fake: scaffold gap size wrong estimation (local) 21141232 21141795 2291779 2291216 NC_000014.9 scf7180000172808 99.29 True fake: scaffold gap size wrong estimation (local) 21138140 21138922 2294282 2293500 NC_000014.9 scf7180000172808 99.49 True fake: scaffold gap size wrong estimation (local) 21136836 21137852 2295633 2294613 NC_000014.9 scf7180000172808 99.61 True fake: scaffold gap size wrong estimation (local) 21131585 21136664 2300892 2295767 NC_000014.9 scf7180000172808 99.08 True fake: scaffold gap size wrong estimation (local) 21130737 21131310 2301676 2301103 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 21124937 21130377 2307549 2301981 NC_000014.9 scf7180000172808 97.09 True fake: scaffold gap size wrong estimation (local) 21120701 21124692 2311701 2307705 NC_000014.9 scf7180000172808 99.77 True fake: scaffold gap size wrong estimation (local) 21117169 21120304 2315303 2312167 NC_000014.9 scf7180000172808 97.03 True fake: scaffold gap size wrong estimation (local) 21114289 21116972 2318071 2315513 NC_000014.9 scf7180000172808 95.16 True fake: scaffold gap size wrong estimation (local) 21111806 21114130 2320653 2318323 NC_000014.9 scf7180000172808 99.91 True fake: scaffold gap size wrong estimation (local) 21098669 21111680 2333795 2320769 NC_000014.9 scf7180000172808 99.82 True fake: scaffold gap size wrong estimation (local) 21083528 21098217 2349013 2334208 NC_000014.9 scf7180000172808 99.46 True fake: scaffold gap size wrong estimation (local) 21077354 21083294 2355114 2349182 NC_000014.9 scf7180000172808 99.75 True fake: scaffold gap size wrong estimation (local) 21066604 21077193 2365811 2355555 NC_000014.9 scf7180000172808 96.71 True fake: scaffold gap size wrong estimation (local) 21065183 21066305 2367639 2366560 NC_000014.9 scf7180000172808 96.1 True fake: not a misassembly (possible transposable element) 74746696 74747818 2368793 2367671 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 21062749 21064414 2370458 2368794 NC_000014.9 scf7180000172808 99.82 True relocation, scaffold gap is present, inconsistency = -53682074 74743277 74744306 2372004 2370975 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 74742383 74743276 2373205 2372312 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 74740720 74741569 2374473 2373624 NC_000014.9 scf7180000172808 99.88 True fake: not a misassembly (possible transposable element) 106874854 106875389 2376371 2376906 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 74737990 74738942 2378697 2377745 NC_000014.9 scf7180000172808 97.59 True fake: scaffold gap size wrong estimation (local) 74730925 74735953 2385619 2380560 NC_000014.9 scf7180000172808 99.7 True relocation, inconsistency = 32129191 106865182 106866292 2385657 2386767 NC_000014.9 scf7180000172808 100.0 True fake: not a misassembly (possible transposable element) 106368421 106369061 2387263 2387903 NC_000014.9 scf7180000172808 98.28 True fake: not a misassembly (possible transposable element) 106868128 106869137 2388207 2389216 NC_000014.9 scf7180000172808 99.47 True fake: not a misassembly (possible transposable element) 106370563 106371894 2389217 2390548 NC_000014.9 scf7180000172808 99.02 True fake: not a misassembly (possible transposable element) 106870470 106871539 2390549 2391618 NC_000014.9 scf7180000172808 99.5 True fake: scaffold gap size wrong estimation (local) 106872545 106874940 2391639 2394034 NC_000014.9 scf7180000172808 99.79 True fake: not a misassembly (possible transposable element) 74730086 74730773 2394813 2394105 NC_000014.9 scf7180000172808 99.56 True fake: not a misassembly (possible transposable element) 106875615 106881348 2395572 2401558 NC_000014.9 scf7180000172808 95.77 True relocation, scaffold gap is present, inconsistency = 32150366 74723829 74724490 2402978 2402317 NC_000014.9 scf7180000172808 100.0 True local misassembly 74724518 74725479 2403942 2402980 NC_000014.9 scf7180000172808 99.79 True fake: scaffold gap size wrong estimation (local) 74722309 74723599 2406436 2405146 NC_000014.9 scf7180000172808 99.61 True fake: scaffold gap size wrong estimation (local) 74719131 74720815 2409623 2407939 NC_000014.9 scf7180000172808 99.88 True fake: scaffold gap size wrong estimation (local) 74717308 74719020 2411343 2409697 NC_000014.9 scf7180000172808 96.0 True fake: scaffold gap size wrong estimation (local) 74715726 74717020 2412969 2411675 NC_000014.9 scf7180000172808 99.77 True fake: scaffold gap size wrong estimation (local) 74714194 74715725 2414519 2412988 NC_000014.9 scf7180000172808 100.0 True fake: scaffold gap size wrong estimation (local) 74712087 74714193 2417240 2415134 NC_000014.9 scf7180000172808 100.0 True indel: indel (> 5bp) 74711462 74712064 2417843 2417241 NC_000014.9 scf7180000172808 96.52 True fake: scaffold gap size wrong estimation (local) 74707965 74711141 2421320 2418151 NC_000014.9 scf7180000172808 99.75 True fake: scaffold gap size wrong estimation (local) 74705260 74707149 2423982 2422093 NC_000014.9 scf7180000172808 99.89 True fake: scaffold gap size wrong estimation (local) 74695261 74705063 2434059 2424161 NC_000014.9 scf7180000172808 99.21 True fake: scaffold gap size wrong estimation (local) 74690277 74693933 2439018 2435353 NC_000014.9 scf7180000172808 99.92 True fake: scaffold gap size wrong estimation (local) 74677710 74689591 2451697 2439643 NC_000014.9 scf7180000172808 98.96 True fake: scaffold gap size wrong estimation (local) 74664740 74676829 2464436 2452490 NC_000014.9 scf7180000172808 98.48 True fake: scaffold gap size wrong estimation (local) 74650626 74664462 2478490 2464667 NC_000014.9 scf7180000172808 99.41 True CONTIG scf7180000172808 2478492 misassembled 66597285 66598582 79 1376 NC_000014.9 scf7180000172809 100.0 True fake: scaffold gap size wrong estimation (local) 66598835 66615050 1565 17821 NC_000014.9 scf7180000172809 99.9 True CONTIG scf7180000172809 17990 correct 92621384 92622418 1035 1 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92618425 92619071 3903 3257 NC_000014.9 scf7180000172810 99.85 True fake: not a misassembly (possible transposable element) 81441584 81443710 3924 6050 NC_000014.9 scf7180000172810 99.91 True fake: not a misassembly (possible transposable element) 92615011 92617096 8156 6071 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 81445231 81446576 8157 9502 NC_000014.9 scf7180000172810 99.86 True fake: not a misassembly (possible transposable element) 92608812 92614635 15775 9972 NC_000014.9 scf7180000172810 99.48 True fake: not a misassembly (possible transposable element) 31247520 31248122 16534 15929 NC_000014.9 scf7180000172810 98.18 True fake: not a misassembly (possible transposable element) 92606258 92608567 18864 16555 NC_000014.9 scf7180000172810 99.96 True fake: scaffold gap size wrong estimation (local) 92594486 92606159 30950 19293 NC_000014.9 scf7180000172810 99.75 True fake: scaffold gap size wrong estimation (local) 92592946 92594176 32569 31339 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92588497 92592151 37017 33363 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 92582674 92588215 43185 37644 NC_000014.9 scf7180000172810 99.91 True fake: scaffold gap size wrong estimation (local) 92579096 92582440 47017 43729 NC_000014.9 scf7180000172810 98.18 True fake: scaffold gap size wrong estimation (local) 92573155 92579008 52985 47098 NC_000014.9 scf7180000172810 99.64 True fake: scaffold gap size wrong estimation (local) 92565417 92572882 60966 53541 NC_000014.9 scf7180000172810 99.2 True fake: not a misassembly (possible transposable element) 55829926 55831702 60987 62763 NC_000014.9 scf7180000172810 99.94 True fake: not a misassembly (possible transposable element) 92561152 92565564 67033 62764 NC_000014.9 scf7180000172810 96.63 True fake: scaffold gap size wrong estimation (local) 92559087 92560792 69057 67352 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92547912 92558899 80545 69190 NC_000014.9 scf7180000172810 96.64 True fake: scaffold gap size wrong estimation (local) 92538175 92545112 91290 84338 NC_000014.9 scf7180000172810 99.68 True fake: scaffold gap size wrong estimation (local) 92536744 92537653 92753 91844 NC_000014.9 scf7180000172810 99.56 True fake: scaffold gap size wrong estimation (local) 92535842 92536598 93639 92883 NC_000014.9 scf7180000172810 97.23 True fake: scaffold gap size wrong estimation (local) 92534605 92535364 94974 94215 NC_000014.9 scf7180000172810 99.87 True fake: scaffold gap size wrong estimation (local) 92529523 92533642 100043 95853 NC_000014.9 scf7180000172810 99.93 True fake: scaffold gap size wrong estimation (local) 92527312 92529417 102268 100164 NC_000014.9 scf7180000172810 99.81 True fake: scaffold gap size wrong estimation (local) 92497026 92526574 132421 103033 NC_000014.9 scf7180000172810 97.62 True fake: scaffold gap size wrong estimation (local) 92480584 92496861 148428 132501 NC_000014.9 scf7180000172810 96.7 True fake: scaffold gap size wrong estimation (local) 92474896 92480284 154097 148696 NC_000014.9 scf7180000172810 99.29 True fake: scaffold gap size wrong estimation (local) 92434997 92474624 194242 154560 NC_000014.9 scf7180000172810 99.13 True fake: scaffold gap size wrong estimation (local) 92420438 92434797 208695 194408 NC_000014.9 scf7180000172810 99.27 True fake: scaffold gap size wrong estimation (local) 92418975 92420310 210125 208790 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92417678 92418720 211345 210303 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92415795 92417456 213310 211651 NC_000014.9 scf7180000172810 99.88 True fake: scaffold gap size wrong estimation (local) 92407148 92414769 221750 214316 NC_000014.9 scf7180000172810 97.41 True fake: scaffold gap size wrong estimation (local) 92406167 92406969 222701 221899 NC_000014.9 scf7180000172810 99.88 True fake: scaffold gap size wrong estimation (local) 92403608 92405847 225585 223346 NC_000014.9 scf7180000172810 99.73 True fake: scaffold gap size wrong estimation (local) 92400440 92403388 228751 225803 NC_000014.9 scf7180000172810 99.9 True fake: scaffold gap size wrong estimation (local) 92396045 92400191 233125 228979 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92394078 92395839 235036 233302 NC_000014.9 scf7180000172810 98.05 True fake: scaffold gap size wrong estimation (local) 92373285 92393857 256530 235211 NC_000014.9 scf7180000172810 95.89 True fake: scaffold gap size wrong estimation (local) 92359489 92373197 270370 256619 NC_000014.9 scf7180000172810 99.48 True fake: scaffold gap size wrong estimation (local) 92354333 92359323 275464 270627 NC_000014.9 scf7180000172810 96.61 True fake: scaffold gap size wrong estimation (local) 92349435 92354182 280353 275600 NC_000014.9 scf7180000172810 99.77 True fake: scaffold gap size wrong estimation (local) 92345652 92349197 284102 280528 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92343848 92345464 285917 284301 NC_000014.9 scf7180000172810 95.73 True local misassembly 92342617 92343608 286909 285918 NC_000014.9 scf7180000172810 99.8 True fake: scaffold gap size wrong estimation (local) 92335634 92342399 294230 287465 NC_000014.9 scf7180000172810 99.93 True fake: scaffold gap size wrong estimation (local) 92319634 92335431 310148 294420 NC_000014.9 scf7180000172810 98.64 True fake: scaffold gap size wrong estimation (local) 92316166 92319634 313730 310262 NC_000014.9 scf7180000172810 99.8 True fake: scaffold gap size wrong estimation (local) 92310466 92315908 319420 313978 NC_000014.9 scf7180000172810 99.91 True indel: indel (<= 5bp) 92306079 92310465 323811 319425 NC_000014.9 scf7180000172810 99.84 True indel: indel (<= 5bp) 92300884 92306078 329011 323817 NC_000014.9 scf7180000172810 99.85 True fake: scaffold gap size wrong estimation (local) 92296613 92297659 330939 329893 NC_000014.9 scf7180000172810 99.9 True local misassembly 92297714 92299984 333591 331322 NC_000014.9 scf7180000172810 99.82 True fake: scaffold gap size wrong estimation (local) 92287583 92296640 343906 334864 NC_000014.9 scf7180000172810 99.72 True fake: scaffold gap size wrong estimation (local) 92285018 92287217 346430 344231 NC_000014.9 scf7180000172810 99.91 True fake: scaffold gap size wrong estimation (local) 92269571 92284806 361824 346785 NC_000014.9 scf7180000172810 97.25 True fake: scaffold gap size wrong estimation (local) 92267014 92268821 364335 362528 NC_000014.9 scf7180000172810 99.78 True fake: scaffold gap size wrong estimation (local) 92265989 92266630 365899 365258 NC_000014.9 scf7180000172810 96.73 True indel: indel (> 5bp) 92263260 92265560 368554 366254 NC_000014.9 scf7180000172810 99.0 True fake: scaffold gap size wrong estimation (local) 92262531 92263238 369490 368783 NC_000014.9 scf7180000172810 96.47 True fake: scaffold gap size wrong estimation (local) 92258518 92261996 373400 369922 NC_000014.9 scf7180000172810 99.86 True fake: not a misassembly (possible transposable element) 58389132 58390289 373680 374837 NC_000014.9 scf7180000172810 99.84 True fake: not a misassembly (possible transposable element) 92251063 92257997 381763 374838 NC_000014.9 scf7180000172810 99.47 True fake: scaffold gap size wrong estimation (local) 92248641 92250635 384255 382244 NC_000014.9 scf7180000172810 99.6 True fake: not a misassembly (possible transposable element) 91269122 91270556 385723 384289 NC_000014.9 scf7180000172810 99.93 True fake: not a misassembly (possible transposable element) 92245971 92247460 387213 385724 NC_000014.9 scf7180000172810 99.73 True fake: not a misassembly (possible transposable element) 91266591 91267422 388408 387577 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 92222235 92227135 410382 405572 NC_000014.9 scf7180000172810 96.75 True fake: scaffold gap size wrong estimation (local) 92221217 92222155 411454 410516 NC_000014.9 scf7180000172810 99.25 True fake: scaffold gap size wrong estimation (local) 92220183 92220793 412396 411786 NC_000014.9 scf7180000172810 99.18 True fake: scaffold gap size wrong estimation (local) 92206542 92219971 426400 412510 NC_000014.9 scf7180000172810 96.4 True fake: not a misassembly (possible transposable element) 49994763 49995907 426401 427545 NC_000014.9 scf7180000172810 99.92 True fake: not a misassembly (possible transposable element) 92201525 92206412 432438 427600 NC_000014.9 scf7180000172810 98.8 True fake: scaffold gap size wrong estimation (local) 92199331 92200537 434578 433372 NC_000014.9 scf7180000172810 99.83 True fake: not a misassembly (possible transposable element) 77889185 77889895 435339 434629 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 92200438 92201555 436457 435340 NC_000014.9 scf7180000172810 99.91 True fake: scaffold gap size wrong estimation (local) 92197916 92199295 438994 437615 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92194850 92197799 442087 439237 NC_000014.9 scf7180000172810 96.32 True fake: scaffold gap size wrong estimation (local) 92187911 92194137 448997 442758 NC_000014.9 scf7180000172810 99.84 True fake: scaffold gap size wrong estimation (local) 92185532 92186506 451350 450397 NC_000014.9 scf7180000172810 97.59 True fake: scaffold gap size wrong estimation (local) 92182758 92183614 454096 453240 NC_000014.9 scf7180000172810 99.65 True fake: scaffold gap size wrong estimation (local) 92180395 92181111 456640 455924 NC_000014.9 scf7180000172810 99.86 True fake: scaffold gap size wrong estimation (local) 92177243 92178802 459723 458164 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92176406 92177108 460527 459825 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92173470 92176151 463490 460708 NC_000014.9 scf7180000172810 96.6 True fake: scaffold gap size wrong estimation (local) 92168276 92173304 468621 463579 NC_000014.9 scf7180000172810 99.94 True fake: scaffold gap size wrong estimation (local) 92164124 92167993 472459 468722 NC_000014.9 scf7180000172810 96.03 True fake: scaffold gap size wrong estimation (local) 92155623 92163820 480869 472658 NC_000014.9 scf7180000172810 99.62 True fake: not a misassembly (possible transposable element) 89577921 89579080 480890 482049 NC_000014.9 scf7180000172810 99.83 True fake: not a misassembly (possible transposable element) 92150357 92155715 487498 482050 NC_000014.9 scf7180000172810 99.34 True fake: scaffold gap size wrong estimation (local) 92148775 92149726 489046 488095 NC_000014.9 scf7180000172810 98.63 True indel: indel (> 5bp) 92147934 92148774 489895 489055 NC_000014.9 scf7180000172810 99.76 True fake: scaffold gap size wrong estimation (local) 92146460 92147754 491761 490467 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 92140889 92146322 497290 491857 NC_000014.9 scf7180000172810 99.96 True relocation, scaffold gap is present, inconsistency = 27831905 64306102 64307255 500172 499019 NC_000014.9 scf7180000172810 99.83 True relocation, inconsistency = -37996952 102302524 102303053 500702 500173 NC_000014.9 scf7180000172810 99.83 True relocation, inconsistency = 10163986 92133313 92138521 505829 500719 NC_000014.9 scf7180000172810 97.12 True fake: scaffold gap size wrong estimation (local) 92122903 92132548 515764 506451 NC_000014.9 scf7180000172810 96.46 True fake: scaffold gap size wrong estimation (local) 92120957 92122844 517992 516109 NC_000014.9 scf7180000172810 99.42 True fake: scaffold gap size wrong estimation (local) 92119325 92120515 520988 519798 NC_000014.9 scf7180000172810 99.83 True fake: scaffold gap size wrong estimation (local) 92117903 92118784 522255 521374 NC_000014.9 scf7180000172810 99.43 True fake: scaffold gap size wrong estimation (local) 92116485 92117902 523720 522303 NC_000014.9 scf7180000172810 95.35 True fake: scaffold gap size wrong estimation (local) 92115413 92115937 524643 524119 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92114008 92114897 525748 524859 NC_000014.9 scf7180000172810 99.1 True fake: scaffold gap size wrong estimation (local) 92113166 92114007 527158 526317 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92109434 92110810 531002 529602 NC_000014.9 scf7180000172810 99.49 True fake: scaffold gap size wrong estimation (local) 92107227 92109253 533143 531107 NC_000014.9 scf7180000172810 99.9 True fake: scaffold gap size wrong estimation (local) 92104925 92107105 535442 533262 NC_000014.9 scf7180000172810 99.77 True fake: scaffold gap size wrong estimation (local) 92102308 92104235 538106 536152 NC_000014.9 scf7180000172810 99.59 True fake: scaffold gap size wrong estimation (local) 92097590 92101655 542786 538708 NC_000014.9 scf7180000172810 99.85 True fake: scaffold gap size wrong estimation (local) 92094176 92095357 545920 544739 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92089559 92093956 550851 546281 NC_000014.9 scf7180000172810 99.29 True fake: scaffold gap size wrong estimation (local) 92088342 92089120 551839 551061 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92086379 92088085 553966 552260 NC_000014.9 scf7180000172810 97.72 True local misassembly 92085282 92086232 554917 553967 NC_000014.9 scf7180000172810 99.79 True fake: scaffold gap size wrong estimation (local) 92081494 92084591 558745 555623 NC_000014.9 scf7180000172810 99.81 True fake: scaffold gap size wrong estimation (local) 92079931 92080729 560324 559526 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92079188 92079829 561691 561050 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92078636 92079164 563759 563231 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92076954 92077745 564603 563812 NC_000014.9 scf7180000172810 98.86 True fake: scaffold gap size wrong estimation (local) 92075358 92076335 566537 565560 NC_000014.9 scf7180000172810 97.85 True local misassembly 92074265 92075159 567432 566538 NC_000014.9 scf7180000172810 99.89 True fake: scaffold gap size wrong estimation (local) 92071577 92072695 570570 569452 NC_000014.9 scf7180000172810 99.91 True fake: scaffold gap size wrong estimation (local) 92069511 92070336 572961 572136 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 92066980 92068621 575484 573885 NC_000014.9 scf7180000172810 97.23 True fake: scaffold gap size wrong estimation (local) 92062221 92066616 580285 575831 NC_000014.9 scf7180000172810 98.8 True fake: scaffold gap size wrong estimation (local) 92060275 92062004 582173 580423 NC_000014.9 scf7180000172810 99.77 True fake: scaffold gap size wrong estimation (local) 92057311 92059579 585161 582893 NC_000014.9 scf7180000172810 99.96 True fake: scaffold gap size wrong estimation (local) 92055090 92056960 587185 585315 NC_000014.9 scf7180000172810 99.95 True fake: scaffold gap size wrong estimation (local) 92052423 92052995 589452 588880 NC_000014.9 scf7180000172810 96.68 True fake: not a misassembly (possible transposable element) 43581707 43583122 591319 589904 NC_000014.9 scf7180000172810 99.72 True fake: not a misassembly (possible transposable element) 92050753 92051731 592330 591352 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 43578969 43580506 593895 592358 NC_000014.9 scf7180000172810 99.87 True fake: not a misassembly (possible transposable element) 92048277 92049004 594643 593916 NC_000014.9 scf7180000172810 99.86 True relocation, scaffold gap is present, inconsistency = 48469494 43570799 43578762 602659 594664 NC_000014.9 scf7180000172810 96.14 True fake: scaffold gap size wrong estimation (local) 43566520 43570653 606882 602777 NC_000014.9 scf7180000172810 98.7 True fake: scaffold gap size wrong estimation (local) 43559752 43566262 613639 607118 NC_000014.9 scf7180000172810 99.52 True fake: scaffold gap size wrong estimation (local) 43542831 43559477 630236 613768 NC_000014.9 scf7180000172810 98.84 True fake: scaffold gap size wrong estimation (local) 43534550 43542720 638523 630311 NC_000014.9 scf7180000172810 99.78 True fake: scaffold gap size wrong estimation (local) 43518388 43534365 654804 638678 NC_000014.9 scf7180000172810 96.3 True fake: scaffold gap size wrong estimation (local) 43515662 43518229 657754 655187 NC_000014.9 scf7180000172810 99.92 True fake: not a misassembly (possible transposable element) 57525161 57525917 657821 658577 NC_000014.9 scf7180000172810 99.87 True fake: not a misassembly (possible transposable element) 43515119 43515756 659215 658578 NC_000014.9 scf7180000172810 100.0 True relocation, scaffold gap is present, inconsistency = 14010263 57526487 57534676 659683 667873 NC_000014.9 scf7180000172810 99.96 True relocation, scaffold gap is present, inconsistency = 375791 57910662 57911448 668068 668854 NC_000014.9 scf7180000172810 100.0 True relocation, inconsistency = 14389778 43520328 43520883 669410 668855 NC_000014.9 scf7180000172810 100.0 True relocation, scaffold gap is present, inconsistency = 14014392 57535455 57538604 669590 672698 NC_000014.9 scf7180000172810 97.67 True fake: scaffold gap size wrong estimation (local) 57541230 57542019 675092 675881 NC_000014.9 scf7180000172810 99.75 True fake: scaffold gap size wrong estimation (local) 57542286 57542802 675938 676454 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 57543084 57551539 676875 685218 NC_000014.9 scf7180000172810 98.55 True fake: scaffold gap size wrong estimation (local) 57553323 57562306 686806 695892 NC_000014.9 scf7180000172810 99.78 True fake: not a misassembly (possible transposable element) 93408615 93409458 696736 695893 NC_000014.9 scf7180000172810 99.88 True fake: not a misassembly (possible transposable element) 57562254 57585830 696763 720339 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 57586837 57587872 721648 722683 NC_000014.9 scf7180000172810 99.9 True fake: scaffold gap size wrong estimation (local) 57588141 57600437 723027 735355 NC_000014.9 scf7180000172810 99.75 True fake: scaffold gap size wrong estimation (local) 57600723 57602159 735541 736977 NC_000014.9 scf7180000172810 99.93 True indel: indel (<= 5bp) 57602161 57604526 736978 739343 NC_000014.9 scf7180000172810 99.66 True fake: scaffold gap size wrong estimation (local) 57604527 57605082 740210 740765 NC_000014.9 scf7180000172810 99.64 True indel: indel (> 5bp) 57605090 57606253 740766 741929 NC_000014.9 scf7180000172810 99.57 True indel: indel (<= 5bp) 57606258 57608786 741930 744458 NC_000014.9 scf7180000172810 99.76 True indel: indel (> 5bp) 57608800 57611591 744459 747250 NC_000014.9 scf7180000172810 99.57 True indel: indel (<= 5bp) 57611592 57615355 747253 751016 NC_000014.9 scf7180000172810 99.79 True indel: indel (<= 5bp) 57615805 57617135 751469 752799 NC_000014.9 scf7180000172810 99.7 True fake: scaffold gap size wrong estimation (local) 57617401 57620055 753024 755681 NC_000014.9 scf7180000172810 99.51 True fake: scaffold gap size wrong estimation (local) 57626403 57628446 761677 763722 NC_000014.9 scf7180000172810 99.71 True fake: scaffold gap size wrong estimation (local) 57628605 57643816 763842 779348 NC_000014.9 scf7180000172810 99.84 True fake: scaffold gap size wrong estimation (local) 57647341 57667323 782061 801995 NC_000014.9 scf7180000172810 99.61 True fake: scaffold gap size wrong estimation (local) 57670982 57681059 805761 816168 NC_000014.9 scf7180000172810 97.46 True fake: scaffold gap size wrong estimation (local) 57682301 57690698 817350 825733 NC_000014.9 scf7180000172810 99.56 True fake: scaffold gap size wrong estimation (local) 57690922 57695037 825912 830027 NC_000014.9 scf7180000172810 99.9 True fake: scaffold gap size wrong estimation (local) 57696116 57708142 831073 843328 NC_000014.9 scf7180000172810 98.1 True fake: scaffold gap size wrong estimation (local) 57708325 57717348 843443 852348 NC_000014.9 scf7180000172810 98.21 True fake: not a misassembly (possible transposable element) 89815717 89816289 852369 852941 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 57717615 57719657 853513 855554 NC_000014.9 scf7180000172810 99.56 True fake: scaffold gap size wrong estimation (local) 57719894 57721789 855906 857775 NC_000014.9 scf7180000172810 98.19 True relocation, scaffold gap is present, inconsistency = -6349990 51371820 51372606 857796 858582 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51373857 51375377 858777 860297 NC_000014.9 scf7180000172810 98.55 True fake: not a misassembly (possible transposable element) 57725264 57726903 862536 864175 NC_000014.9 scf7180000172810 98.84 True fake: not a misassembly (possible transposable element) 51376233 51377406 864390 865563 NC_000014.9 scf7180000172810 99.4 True fake: scaffold gap size wrong estimation (local) 51378277 51381444 866186 869347 NC_000014.9 scf7180000172810 99.75 True fake: scaffold gap size wrong estimation (local) 51381567 51385851 869428 873712 NC_000014.9 scf7180000172810 99.86 True fake: scaffold gap size wrong estimation (local) 51386074 51389809 873912 877647 NC_000014.9 scf7180000172810 99.87 True fake: scaffold gap size wrong estimation (local) 51390169 51402566 877923 890308 NC_000014.9 scf7180000172810 99.73 True fake: scaffold gap size wrong estimation (local) 51402972 51412595 890680 900319 NC_000014.9 scf7180000172810 99.89 True fake: scaffold gap size wrong estimation (local) 51418292 51437346 907009 926075 NC_000014.9 scf7180000172810 99.44 True fake: scaffold gap size wrong estimation (local) 51437539 51459648 926214 948390 NC_000014.9 scf7180000172810 99.67 True fake: scaffold gap size wrong estimation (local) 51459893 51467166 948590 955863 NC_000014.9 scf7180000172810 99.95 True fake: scaffold gap size wrong estimation (local) 51468331 51469065 956978 957712 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51469626 51472347 958253 960884 NC_000014.9 scf7180000172810 96.56 True fake: scaffold gap size wrong estimation (local) 51472551 51486034 961046 974685 NC_000014.9 scf7180000172810 98.97 True fake: scaffold gap size wrong estimation (local) 51486239 51502044 974861 990665 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 51502234 51514690 990929 1003544 NC_000014.9 scf7180000172810 97.56 True indel: indel (> 5bp) 51514825 51525281 1003686 1014126 NC_000014.9 scf7180000172810 99.77 True fake: scaffold gap size wrong estimation (local) 51525541 51532162 1014304 1020918 NC_000014.9 scf7180000172810 99.83 True fake: scaffold gap size wrong estimation (local) 51532382 51536077 1021085 1024780 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 51536681 51549602 1025435 1038378 NC_000014.9 scf7180000172810 99.95 True fake: scaffold gap size wrong estimation (local) 51549858 51558266 1038580 1046992 NC_000014.9 scf7180000172810 99.79 True fake: scaffold gap size wrong estimation (local) 51558412 51560614 1047130 1049332 NC_000014.9 scf7180000172810 99.86 True fake: scaffold gap size wrong estimation (local) 51560709 51565905 1049423 1054619 NC_000014.9 scf7180000172810 99.88 True fake: scaffold gap size wrong estimation (local) 51566127 51569829 1054862 1058700 NC_000014.9 scf7180000172810 99.03 True fake: scaffold gap size wrong estimation (local) 51570030 51588350 1058823 1077405 NC_000014.9 scf7180000172810 98.62 True fake: scaffold gap size wrong estimation (local) 51588463 51589347 1077486 1078370 NC_000014.9 scf7180000172810 99.89 True fake: scaffold gap size wrong estimation (local) 51589370 51593874 1078591 1082964 NC_000014.9 scf7180000172810 95.65 True fake: not a misassembly (possible transposable element) 85672705 85674579 1084872 1082998 NC_000014.9 scf7180000172810 99.89 True fake: not a misassembly (possible transposable element) 51594737 51599062 1085342 1089671 NC_000014.9 scf7180000172810 99.79 True fake: scaffold gap size wrong estimation (local) 51599316 51605147 1089856 1095691 NC_000014.9 scf7180000172810 99.83 True fake: scaffold gap size wrong estimation (local) 51605352 51628687 1095826 1119169 NC_000014.9 scf7180000172810 99.94 True fake: scaffold gap size wrong estimation (local) 51629152 51647948 1119574 1138384 NC_000014.9 scf7180000172810 99.21 True fake: scaffold gap size wrong estimation (local) 51648047 51650402 1138578 1140933 NC_000014.9 scf7180000172810 99.96 True fake: scaffold gap size wrong estimation (local) 51650659 51656427 1141079 1146923 NC_000014.9 scf7180000172810 99.74 True fake: scaffold gap size wrong estimation (local) 51656437 51668399 1146986 1159030 NC_000014.9 scf7180000172810 98.81 True fake: not a misassembly (possible transposable element) 21875708 21876626 1159400 1160318 NC_000014.9 scf7180000172810 99.78 True fake: not a misassembly (possible transposable element) 51668901 51691601 1160339 1183036 NC_000014.9 scf7180000172810 99.01 True fake: scaffold gap size wrong estimation (local) 51691800 51713194 1183149 1204378 NC_000014.9 scf7180000172810 99.02 True fake: scaffold gap size wrong estimation (local) 51713459 51717270 1204596 1208406 NC_000014.9 scf7180000172810 99.74 True fake: not a misassembly (possible transposable element) 64096125 64097199 1209501 1208427 NC_000014.9 scf7180000172810 100.0 True fake: not a misassembly (possible transposable element) 51717244 51721529 1209503 1213788 NC_000014.9 scf7180000172810 99.81 True fake: scaffold gap size wrong estimation (local) 51721762 51735346 1214012 1227520 NC_000014.9 scf7180000172810 99.36 True fake: scaffold gap size wrong estimation (local) 51735572 51746531 1227698 1238692 NC_000014.9 scf7180000172810 99.87 True fake: scaffold gap size wrong estimation (local) 51746785 51759482 1238811 1251622 NC_000014.9 scf7180000172810 99.28 True fake: scaffold gap size wrong estimation (local) 51759643 51767712 1251998 1260108 NC_000014.9 scf7180000172810 99.6 True fake: scaffold gap size wrong estimation (local) 51768076 51769952 1260553 1262429 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51771629 51772820 1264355 1265546 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51773270 51774539 1265868 1267137 NC_000014.9 scf7180000172810 100.0 True local misassembly 51774699 51775794 1267138 1268233 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51776050 51788890 1268497 1281325 NC_000014.9 scf7180000172810 98.75 True fake: scaffold gap size wrong estimation (local) 51789101 51790443 1282016 1283358 NC_000014.9 scf7180000172810 99.93 True fake: scaffold gap size wrong estimation (local) 51790779 51794593 1283449 1287255 NC_000014.9 scf7180000172810 99.55 True fake: scaffold gap size wrong estimation (local) 51800600 51802696 1295045 1297141 NC_000014.9 scf7180000172810 99.62 True fake: scaffold gap size wrong estimation (local) 51803348 51824061 1297820 1318817 NC_000014.9 scf7180000172810 97.63 True fake: scaffold gap size wrong estimation (local) 51824308 51829844 1318975 1324511 NC_000014.9 scf7180000172810 99.78 True fake: scaffold gap size wrong estimation (local) 51830028 51836874 1324717 1331589 NC_000014.9 scf7180000172810 99.59 True fake: scaffold gap size wrong estimation (local) 51837652 51842723 1332313 1337431 NC_000014.9 scf7180000172810 99.43 True fake: scaffold gap size wrong estimation (local) 51842833 51844802 1337516 1339486 NC_000014.9 scf7180000172810 99.59 True fake: scaffold gap size wrong estimation (local) 51844966 51853940 1339644 1348634 NC_000014.9 scf7180000172810 99.71 True fake: scaffold gap size wrong estimation (local) 51856641 51889101 1351093 1383498 NC_000014.9 scf7180000172810 99.51 True fake: scaffold gap size wrong estimation (local) 51889305 51906875 1383594 1401382 NC_000014.9 scf7180000172810 98.89 True fake: scaffold gap size wrong estimation (local) 51907028 51908562 1401503 1403037 NC_000014.9 scf7180000172810 99.93 True fake: scaffold gap size wrong estimation (local) 51908783 51917850 1403234 1412300 NC_000014.9 scf7180000172810 99.89 True fake: scaffold gap size wrong estimation (local) 51918041 51928039 1412392 1422515 NC_000014.9 scf7180000172810 98.77 True fake: scaffold gap size wrong estimation (local) 51928212 51929636 1422723 1424147 NC_000014.9 scf7180000172810 99.93 True fake: scaffold gap size wrong estimation (local) 51930874 51932194 1425408 1426781 NC_000014.9 scf7180000172810 99.3 True fake: scaffold gap size wrong estimation (local) 51932285 51945061 1426884 1439630 NC_000014.9 scf7180000172810 99.31 True fake: scaffold gap size wrong estimation (local) 51945129 51948873 1439863 1443607 NC_000014.9 scf7180000172810 99.76 True fake: scaffold gap size wrong estimation (local) 51949117 51973105 1443802 1467831 NC_000014.9 scf7180000172810 98.51 True fake: scaffold gap size wrong estimation (local) 51973338 51976238 1467974 1470874 NC_000014.9 scf7180000172810 100.0 True fake: scaffold gap size wrong estimation (local) 51976422 52009851 1471062 1504512 NC_000014.9 scf7180000172810 99.92 True fake: scaffold gap size wrong estimation (local) 52009997 52027667 1504619 1522204 NC_000014.9 scf7180000172810 99.41 True fake: scaffold gap size wrong estimation (local) 52027853 52035729 1522370 1530115 NC_000014.9 scf7180000172810 97.55 True relocation, inconsistency = 21346665 30677959 30681181 1533343 1530122 NC_000014.9 scf7180000172810 99.97 True fake: scaffold gap size wrong estimation (local) 30668681 30677831 1542601 1533471 NC_000014.9 scf7180000172810 99.57 True relocation, scaffold gap is present, inconsistency = -33642292 64307702 64309359 1545963 1544215 NC_000014.9 scf7180000172810 95.84 True CONTIG scf7180000172810 1545963 misassembled 103676531 103677757 1 1227 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 103678126 103681585 1591 5048 NC_000014.9 scf7180000172811 99.77 True fake: scaffold gap size wrong estimation (local) 103681718 103682260 5187 5729 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 103682379 103691173 5879 14513 NC_000014.9 scf7180000172811 97.48 True fake: scaffold gap size wrong estimation (local) 103694376 103704459 17561 27657 NC_000014.9 scf7180000172811 99.44 True fake: scaffold gap size wrong estimation (local) 103704553 103722626 27777 45884 NC_000014.9 scf7180000172811 99.58 True fake: scaffold gap size wrong estimation (local) 103722913 103726959 46108 50154 NC_000014.9 scf7180000172811 99.95 True fake: scaffold gap size wrong estimation (local) 103727224 103731127 50333 54236 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 103731522 103745833 54609 68923 NC_000014.9 scf7180000172811 99.93 True fake: scaffold gap size wrong estimation (local) 103746079 103747789 69188 70898 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 103748069 103750574 71127 73632 NC_000014.9 scf7180000172811 99.96 True fake: not a misassembly (possible transposable element) 54891521 54892529 74661 73653 NC_000014.9 scf7180000172811 99.8 True fake: not a misassembly (possible transposable element) 103751081 103752547 74872 76338 NC_000014.9 scf7180000172811 98.64 True fake: scaffold gap size wrong estimation (local) 103752738 103754523 76451 78225 NC_000014.9 scf7180000172811 99.21 True fake: scaffold gap size wrong estimation (local) 103755051 103756236 80609 81794 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 103757324 103758972 82843 84491 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 103759375 103761276 84988 86889 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 103761765 103763220 87012 88466 NC_000014.9 scf7180000172811 99.79 True fake: scaffold gap size wrong estimation (local) 103763971 103766007 89588 91567 NC_000014.9 scf7180000172811 96.78 True fake: scaffold gap size wrong estimation (local) 103766783 103768131 92749 94097 NC_000014.9 scf7180000172811 100.0 True relocation, scaffold gap is present, inconsistency = 64620610 39145077 39146122 95193 94148 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39142731 39143701 97601 96631 NC_000014.9 scf7180000172811 99.9 True fake: scaffold gap size wrong estimation (local) 39140803 39142160 99657 98300 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39139605 39140697 100878 99787 NC_000014.9 scf7180000172811 99.73 True fake: scaffold gap size wrong estimation (local) 39137266 39139563 103219 101019 NC_000014.9 scf7180000172811 95.7 True fake: scaffold gap size wrong estimation (local) 39132978 39136999 107466 103405 NC_000014.9 scf7180000172811 98.86 True fake: scaffold gap size wrong estimation (local) 39131279 39132282 109041 108038 NC_000014.9 scf7180000172811 99.9 True fake: not a misassembly (possible transposable element) 103780700 103781744 109093 110137 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 39130011 39130693 110943 110261 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39128501 39129527 115588 114562 NC_000014.9 scf7180000172811 99.9 True fake: scaffold gap size wrong estimation (local) 39124610 39125816 117857 116651 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 39120804 39123703 121612 118700 NC_000014.9 scf7180000172811 99.9 True local misassembly 39123758 39124665 122540 121633 NC_000014.9 scf7180000172811 99.78 True fake: scaffold gap size wrong estimation (local) 39117438 39120631 125781 122587 NC_000014.9 scf7180000172811 98.96 True fake: scaffold gap size wrong estimation (local) 39115641 39116195 127638 127084 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39113118 39115474 131380 129024 NC_000014.9 scf7180000172811 99.79 True fake: scaffold gap size wrong estimation (local) 39111406 39112202 132999 132203 NC_000014.9 scf7180000172811 99.87 True fake: scaffold gap size wrong estimation (local) 39109577 39110850 134646 133369 NC_000014.9 scf7180000172811 99.45 True fake: scaffold gap size wrong estimation (local) 39107807 39109493 136428 134742 NC_000014.9 scf7180000172811 99.88 True indel: indel (<= 5bp) 39107166 39107806 137070 136430 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 39105928 39106830 138371 137469 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39104418 39105275 139802 138945 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39102216 39104273 142188 140131 NC_000014.9 scf7180000172811 99.95 True fake: scaffold gap size wrong estimation (local) 39099312 39100577 145950 144665 NC_000014.9 scf7180000172811 99.76 True fake: scaffold gap size wrong estimation (local) 39097987 39098591 147076 146472 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 39096533 39097836 148595 147292 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 39095571 39096332 149685 148924 NC_000014.9 scf7180000172811 99.61 True fake: scaffold gap size wrong estimation (local) 39094426 39095413 150723 149736 NC_000014.9 scf7180000172811 97.98 True local misassembly 39093311 39094225 151638 150724 NC_000014.9 scf7180000172811 99.45 True fake: scaffold gap size wrong estimation (local) 39089047 39092953 155912 152006 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 39084892 39088741 160044 156183 NC_000014.9 scf7180000172811 99.57 True fake: scaffold gap size wrong estimation (local) 39080678 39083523 164173 161329 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 39079855 39080542 165014 164327 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 39077877 39079564 166855 165168 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 39073801 39076661 170783 167894 NC_000014.9 scf7180000172811 98.1 True fake: scaffold gap size wrong estimation (local) 39071826 39073399 172727 171154 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 39066801 39071503 177677 173052 NC_000014.9 scf7180000172811 97.96 True fake: scaffold gap size wrong estimation (local) 39066033 39066655 178429 177807 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 39058583 39065782 185783 178604 NC_000014.9 scf7180000172811 99.54 True fake: scaffold gap size wrong estimation (local) 39049990 39058300 194386 186007 NC_000014.9 scf7180000172811 99.6 True fake: scaffold gap size wrong estimation (local) 39041885 39049243 202535 195031 NC_000014.9 scf7180000172811 98.46 True fake: scaffold gap size wrong estimation (local) 39036345 39041669 208100 202770 NC_000014.9 scf7180000172811 98.46 True fake: scaffold gap size wrong estimation (local) 39031582 39036069 212821 208325 NC_000014.9 scf7180000172811 99.78 True fake: scaffold gap size wrong estimation (local) 39024896 39031373 219480 212991 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 39023339 39024621 221027 219745 NC_000014.9 scf7180000172811 99.69 True fake: scaffold gap size wrong estimation (local) 39006274 39017455 242099 230172 NC_000014.9 scf7180000172811 97.68 True relocation, inconsistency = 17309492 21693408 21696781 245474 242100 NC_000014.9 scf7180000172811 99.56 True fake: scaffold gap size wrong estimation (local) 21689707 21693165 249110 245654 NC_000014.9 scf7180000172811 99.45 True fake: scaffold gap size wrong estimation (local) 21685774 21688125 252919 250568 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 21681973 21685465 256625 253136 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 21680437 21681508 258034 256963 NC_000014.9 scf7180000172811 99.72 True fake: scaffold gap size wrong estimation (local) 21676633 21680213 261923 258345 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 21675830 21676518 262815 262127 NC_000014.9 scf7180000172811 100.0 True indel: indel (<= 5bp) 21675293 21675829 263354 262818 NC_000014.9 scf7180000172811 99.44 True fake: scaffold gap size wrong estimation (local) 21674347 21675292 264474 263529 NC_000014.9 scf7180000172811 95.67 True local misassembly 21673605 21674190 265060 264475 NC_000014.9 scf7180000172811 99.49 True fake: scaffold gap size wrong estimation (local) 21664121 21673604 274563 265080 NC_000014.9 scf7180000172811 99.76 True fake: scaffold gap size wrong estimation (local) 21663481 21664120 275797 275158 NC_000014.9 scf7180000172811 99.69 True fake: scaffold gap size wrong estimation (local) 21659237 21663227 279963 276075 NC_000014.9 scf7180000172811 97.19 True fake: not a misassembly (possible transposable element) 70387757 70389008 281215 279964 NC_000014.9 scf7180000172811 99.92 True fake: not a misassembly (possible transposable element) 21657710 21659316 282842 281236 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 21649025 21657396 291432 283076 NC_000014.9 scf7180000172811 99.65 True fake: scaffold gap size wrong estimation (local) 21647144 21648890 293347 291587 NC_000014.9 scf7180000172811 99.03 True fake: scaffold gap size wrong estimation (local) 21642581 21645964 297923 294535 NC_000014.9 scf7180000172811 99.76 True fake: scaffold gap size wrong estimation (local) 21637547 21642201 302880 298176 NC_000014.9 scf7180000172811 98.05 True fake: scaffold gap size wrong estimation (local) 21634177 21636634 306206 303745 NC_000014.9 scf7180000172811 99.19 True fake: scaffold gap size wrong estimation (local) 21632785 21634011 307642 306416 NC_000014.9 scf7180000172811 99.84 True relocation, scaffold gap is present, inconsistency = 28832 21602618 21603902 308977 307693 NC_000014.9 scf7180000172811 99.77 True fake: scaffold gap size wrong estimation (local) 21599248 21602259 312456 309435 NC_000014.9 scf7180000172811 99.5 True fake: not a misassembly (possible transposable element) 21630400 21632017 314093 312477 NC_000014.9 scf7180000172811 99.57 True fake: not a misassembly (possible transposable element) 21596661 21598237 315690 314114 NC_000014.9 scf7180000172811 99.75 True relocation, scaffold gap is present, inconsistency = -34241 21629263 21630505 317329 316087 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21627478 21629108 319176 317527 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21626594 21627214 320022 319402 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 21624851 21626393 321785 320243 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21616567 21624695 330043 321871 NC_000014.9 scf7180000172811 99.04 True fake: scaffold gap size wrong estimation (local) 21614786 21615963 331784 330557 NC_000014.9 scf7180000172811 98.57 True fake: scaffold gap size wrong estimation (local) 21614024 21614577 332557 332004 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21611677 21613765 334960 332873 NC_000014.9 scf7180000172811 99.14 True fake: scaffold gap size wrong estimation (local) 21609287 21611378 337413 335313 NC_000014.9 scf7180000172811 99.09 True fake: scaffold gap size wrong estimation (local) 21606649 21609000 340056 337705 NC_000014.9 scf7180000172811 99.11 True fake: scaffold gap size wrong estimation (local) 21604553 21605530 342188 341211 NC_000014.9 scf7180000172811 99.9 True relocation, scaffold gap is present, inconsistency = -42268148 63862845 63863866 352044 351023 NC_000014.9 scf7180000172811 97.65 True fake: scaffold gap size wrong estimation (local) 63861627 63862455 353500 352672 NC_000014.9 scf7180000172811 99.52 True fake: scaffold gap size wrong estimation (local) 63859953 63861144 354990 353799 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 63852047 63858132 363161 357076 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 63851246 63851852 364202 363596 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 63850321 63851151 365497 364668 NC_000014.9 scf7180000172811 99.76 True fake: scaffold gap size wrong estimation (local) 63848044 63850094 367793 365723 NC_000014.9 scf7180000172811 99.95 True relocation, scaffold gap is present, inconsistency = 42251666 21594736 21596293 369366 367878 NC_000014.9 scf7180000172811 95.06 True fake: scaffold gap size wrong estimation (local) 21591618 21593875 373102 370845 NC_000014.9 scf7180000172811 99.78 True fake: scaffold gap size wrong estimation (local) 21588015 21591140 376735 373603 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 21584798 21587769 379860 376895 NC_000014.9 scf7180000172811 99.73 True fake: scaffold gap size wrong estimation (local) 21582613 21584647 382122 380056 NC_000014.9 scf7180000172811 95.94 True fake: scaffold gap size wrong estimation (local) 21580593 21581261 384191 383523 NC_000014.9 scf7180000172811 99.4 True fake: scaffold gap size wrong estimation (local) 21578273 21579246 386892 385919 NC_000014.9 scf7180000172811 99.79 True fake: scaffold gap size wrong estimation (local) 21575544 21577785 389526 387285 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 21572631 21573438 392466 391659 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 21568922 21572147 396172 392930 NC_000014.9 scf7180000172811 99.72 True fake: scaffold gap size wrong estimation (local) 21566166 21566703 399366 398829 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21563673 21565931 402079 399802 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 21561993 21562778 403696 402911 NC_000014.9 scf7180000172811 99.87 True fake: scaffold gap size wrong estimation (local) 21560967 21561823 404727 403871 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21559236 21560022 406428 405642 NC_000014.9 scf7180000172811 99.75 True fake: scaffold gap size wrong estimation (local) 21558672 21559253 407176 406595 NC_000014.9 scf7180000172811 99.48 True fake: scaffold gap size wrong estimation (local) 21556166 21558155 409711 407722 NC_000014.9 scf7180000172811 99.9 True fake: scaffold gap size wrong estimation (local) 21552923 21554443 412894 411374 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 21550415 21551329 415427 414513 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 21548039 21548667 418009 417381 NC_000014.9 scf7180000172811 95.87 True local misassembly 21546880 21547875 419005 418010 NC_000014.9 scf7180000172811 99.0 True fake: scaffold gap size wrong estimation (local) 21542744 21544420 423098 421422 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 21541606 21542246 424231 423591 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 21535345 21540198 430409 425574 NC_000014.9 scf7180000172811 99.63 True fake: scaffold gap size wrong estimation (local) 21532958 21535088 432800 430670 NC_000014.9 scf7180000172811 99.86 True relocation, scaffold gap is present, inconsistency = -12965548 34496380 34497860 434926 433446 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34494675 34495391 436793 436077 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 34491954 34492471 439492 438975 NC_000014.9 scf7180000172811 100.0 True local misassembly 34492854 34493435 440105 439524 NC_000014.9 scf7180000172811 99.48 True fake: scaffold gap size wrong estimation (local) 34491051 34491783 440910 440178 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34487804 34490019 445722 443535 NC_000014.9 scf7180000172811 98.74 True fake: scaffold gap size wrong estimation (local) 34485482 34486431 449536 448587 NC_000014.9 scf7180000172811 98.84 True fake: scaffold gap size wrong estimation (local) 34482355 34484333 453020 451055 NC_000014.9 scf7180000172811 98.16 True fake: scaffold gap size wrong estimation (local) 34480685 34481752 454788 453721 NC_000014.9 scf7180000172811 98.03 True local misassembly 34479806 34480364 455347 454789 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34477945 34479075 457515 456385 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 34476785 34477413 460159 459531 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34471685 34475417 465244 461513 NC_000014.9 scf7180000172811 99.87 True fake: not a misassembly (possible transposable element) 62042271 62043105 465245 466079 NC_000014.9 scf7180000172811 99.53 True fake: not a misassembly (possible transposable element) 34468725 34469808 469542 468459 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34459400 34468469 478695 469701 NC_000014.9 scf7180000172811 97.4 True fake: scaffold gap size wrong estimation (local) 34456665 34457976 481418 480161 NC_000014.9 scf7180000172811 95.55 True fake: scaffold gap size wrong estimation (local) 34451724 34456678 486620 481616 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 34449758 34451037 488567 487288 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34446306 34447021 491788 491073 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 34445486 34446126 493124 492484 NC_000014.9 scf7180000172811 99.22 True fake: scaffold gap size wrong estimation (local) 34442102 34443375 496434 495171 NC_000014.9 scf7180000172811 98.98 True fake: scaffold gap size wrong estimation (local) 34439450 34440655 499128 497923 NC_000014.9 scf7180000172811 100.0 True relocation, inconsistency = 23677314 58117970 58134734 499129 515845 NC_000014.9 scf7180000172811 99.39 True fake: scaffold gap size wrong estimation (local) 58134950 58137418 516067 518535 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58137606 58140065 518722 521181 NC_000014.9 scf7180000172811 99.76 True fake: scaffold gap size wrong estimation (local) 58140836 58142472 521905 523541 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58142799 58144658 523845 525709 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 58144779 58147329 525799 528349 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58147506 58148152 528539 529185 NC_000014.9 scf7180000172811 100.0 True indel: indel (> 5bp) 58148175 58153341 529186 534352 NC_000014.9 scf7180000172811 99.57 True fake: scaffold gap size wrong estimation (local) 58153683 58154556 535129 536002 NC_000014.9 scf7180000172811 99.77 True local misassembly 58154695 58156020 536003 537328 NC_000014.9 scf7180000172811 98.49 True fake: scaffold gap size wrong estimation (local) 58156291 58156930 537677 538316 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58157174 58161113 538542 542463 NC_000014.9 scf7180000172811 99.46 True fake: scaffold gap size wrong estimation (local) 58161386 58165240 542732 546589 NC_000014.9 scf7180000172811 99.95 True fake: scaffold gap size wrong estimation (local) 58165328 58170414 546671 551757 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58170525 58173146 551882 554503 NC_000014.9 scf7180000172811 99.96 True relocation, scaffold gap is present, inconsistency = -2894088 55279287 55280544 554732 555989 NC_000014.9 scf7180000172811 99.92 True relocation, scaffold gap is present, inconsistency = 33656 55244152 55244652 557468 556968 NC_000014.9 scf7180000172811 100.0 True relocation, scaffold gap is present, inconsistency = 2929213 58173916 58176103 557519 559706 NC_000014.9 scf7180000172811 99.73 True fake: scaffold gap size wrong estimation (local) 58176269 58177017 561211 561959 NC_000014.9 scf7180000172811 98.53 True indel: indel (<= 5bp) 58177018 58178154 561962 563098 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 58179434 58180733 564621 565920 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58182415 58184803 567490 569878 NC_000014.9 scf7180000172811 99.96 True fake: not a misassembly (possible transposable element) 55281270 55281984 569929 570643 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 58185074 58190144 570707 575825 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 58190771 58195266 576381 580875 NC_000014.9 scf7180000172811 99.98 True fake: scaffold gap size wrong estimation (local) 58195496 58197147 581360 583011 NC_000014.9 scf7180000172811 98.79 True fake: scaffold gap size wrong estimation (local) 58197292 58202421 583347 588591 NC_000014.9 scf7180000172811 98.38 True fake: not a misassembly (possible transposable element) 74866228 74868324 588612 590708 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 58202555 58204181 590769 592402 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 58204445 58204994 592721 593270 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58206451 58207041 594983 595573 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 58207598 58210713 596624 599740 NC_000014.9 scf7180000172811 99.97 True fake: not a misassembly (possible transposable element) 77513065 77513766 599741 600442 NC_000014.9 scf7180000172811 99.59 True fake: not a misassembly (possible transposable element) 58210935 58221163 600472 610443 NC_000014.9 scf7180000172811 95.58 True fake: scaffold gap size wrong estimation (local) 58221830 58222517 611181 611868 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58223400 58224087 612524 613210 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 58224977 58225932 614109 615073 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 58226863 58229198 616061 618499 NC_000014.9 scf7180000172811 98.38 True fake: scaffold gap size wrong estimation (local) 58229681 58230777 619079 620175 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58231231 58232414 620501 621684 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58232655 58237689 622032 627010 NC_000014.9 scf7180000172811 97.77 True fake: scaffold gap size wrong estimation (local) 58237949 58240757 627334 630142 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 58241770 58246450 631090 635769 NC_000014.9 scf7180000172811 99.66 True fake: scaffold gap size wrong estimation (local) 58246550 58248717 635863 638020 NC_000014.9 scf7180000172811 99.43 True fake: scaffold gap size wrong estimation (local) 58249400 58250055 638745 639400 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58250232 58253101 639497 642404 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 58254400 58255642 644429 645670 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 58257493 58258099 647389 647995 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 58259353 58261147 649295 651089 NC_000014.9 scf7180000172811 99.78 True indel: indel (> 5bp) 58261165 58262384 651090 652309 NC_000014.9 scf7180000172811 98.36 True fake: scaffold gap size wrong estimation (local) 58263092 58269094 653147 659149 NC_000014.9 scf7180000172811 99.92 True indel: indel (> 5bp) 58269095 58269656 659167 659728 NC_000014.9 scf7180000172811 98.04 True fake: scaffold gap size wrong estimation (local) 58269657 58271255 660350 661948 NC_000014.9 scf7180000172811 99.62 True relocation, scaffold gap is present, inconsistency = 19126509 77397885 77398784 662968 662069 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 77395361 77396049 665371 664683 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77393449 77395121 667237 665565 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77392009 77392643 668840 668206 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77385430 77390032 675090 670510 NC_000014.9 scf7180000172811 95.3 True fake: scaffold gap size wrong estimation (local) 77382914 77385324 677593 675197 NC_000014.9 scf7180000172811 98.58 True fake: scaffold gap size wrong estimation (local) 77373310 77382732 687310 677793 NC_000014.9 scf7180000172811 98.49 True fake: scaffold gap size wrong estimation (local) 77370889 77372907 689639 687621 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 77368722 77370005 692256 690973 NC_000014.9 scf7180000172811 98.29 True local misassembly 77367883 77368467 692869 692285 NC_000014.9 scf7180000172811 99.66 True fake: scaffold gap size wrong estimation (local) 77361254 77367074 699637 693817 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 77358533 77360989 702398 699942 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77355405 77357875 705507 703037 NC_000014.9 scf7180000172811 99.07 True fake: scaffold gap size wrong estimation (local) 77353700 77354733 707446 706413 NC_000014.9 scf7180000172811 97.97 True local misassembly 77352683 77353431 708195 707447 NC_000014.9 scf7180000172811 99.73 True fake: scaffold gap size wrong estimation (local) 77351512 77352321 709629 708820 NC_000014.9 scf7180000172811 97.53 True local misassembly 77349316 77351268 711582 709630 NC_000014.9 scf7180000172811 99.95 True fake: scaffold gap size wrong estimation (local) 77348494 77349121 712426 711799 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77345969 77348241 714877 712594 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 77334133 77345029 726697 715788 NC_000014.9 scf7180000172811 99.7 True fake: scaffold gap size wrong estimation (local) 77332050 77333004 728977 728042 NC_000014.9 scf7180000172811 98.01 True fake: scaffold gap size wrong estimation (local) 77323556 77331928 737510 729090 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 77321886 77323347 739068 737607 NC_000014.9 scf7180000172811 99.79 True fake: scaffold gap size wrong estimation (local) 77318983 77321628 741967 739322 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 77312647 77318753 748417 742239 NC_000014.9 scf7180000172811 99.44 True fake: scaffold gap size wrong estimation (local) 77309949 77312447 751091 748581 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 77308537 77309707 752497 751327 NC_000014.9 scf7180000172811 95.64 True fake: scaffold gap size wrong estimation (local) 77300832 77307878 760078 753032 NC_000014.9 scf7180000172811 99.93 True fake: scaffold gap size wrong estimation (local) 77295646 77300569 765232 760309 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 77294648 77295369 766199 765478 NC_000014.9 scf7180000172811 99.72 True fake: scaffold gap size wrong estimation (local) 77291999 77294456 769520 767063 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 77255262 77291828 806171 769670 NC_000014.9 scf7180000172811 98.67 True fake: scaffold gap size wrong estimation (local) 77241205 77255146 820177 806288 NC_000014.9 scf7180000172811 99.45 True fake: scaffold gap size wrong estimation (local) 77236383 77240941 824946 820388 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 77232498 77235509 828557 825546 NC_000014.9 scf7180000172811 99.97 True fake: scaffold gap size wrong estimation (local) 77230202 77232348 830836 828691 NC_000014.9 scf7180000172811 99.49 True fake: scaffold gap size wrong estimation (local) 77226966 77229607 834077 831436 NC_000014.9 scf7180000172811 99.21 True fake: scaffold gap size wrong estimation (local) 77221318 77226777 839836 834298 NC_000014.9 scf7180000172811 98.18 True local misassembly 77218192 77220859 842504 839837 NC_000014.9 scf7180000172811 98.88 True local misassembly 77216128 77218191 844961 842898 NC_000014.9 scf7180000172811 99.71 True indel: indel (<= 5bp) 77215622 77216127 845469 844964 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 77193958 77215396 867071 845623 NC_000014.9 scf7180000172811 99.64 True fake: scaffold gap size wrong estimation (local) 77186134 77193608 875020 867539 NC_000014.9 scf7180000172811 99.7 True fake: scaffold gap size wrong estimation (local) 77180631 77186019 880510 875122 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 77179569 77180420 881451 880600 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77175590 77178339 885359 882635 NC_000014.9 scf7180000172811 98.81 True fake: scaffold gap size wrong estimation (local) 77174631 77175315 886238 885554 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77168740 77174533 892215 886370 NC_000014.9 scf7180000172811 97.65 True fake: scaffold gap size wrong estimation (local) 77167382 77168612 893575 892308 NC_000014.9 scf7180000172811 99.67 True fake: scaffold gap size wrong estimation (local) 77166231 77167157 894964 894038 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 77164682 77165957 896370 895095 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 77160237 77164423 900795 896609 NC_000014.9 scf7180000172811 99.74 True fake: scaffold gap size wrong estimation (local) 77148603 77159780 912289 901154 NC_000014.9 scf7180000172811 98.37 True fake: scaffold gap size wrong estimation (local) 77119622 77147675 941096 913159 NC_000014.9 scf7180000172811 99.28 True fake: scaffold gap size wrong estimation (local) 77118708 77119339 941964 941329 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 77115908 77118550 944859 942217 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 77100580 77115702 960099 945024 NC_000014.9 scf7180000172811 99.28 True fake: scaffold gap size wrong estimation (local) 77096819 77100255 963873 960437 NC_000014.9 scf7180000172811 99.97 True fake: scaffold gap size wrong estimation (local) 77094569 77096725 966108 963948 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 77090558 77094460 970464 966198 NC_000014.9 scf7180000172811 99.67 True fake: scaffold gap size wrong estimation (local) 77084683 77090273 976461 970826 NC_000014.9 scf7180000172811 99.3 True fake: scaffold gap size wrong estimation (local) 77081887 77083892 979210 977193 NC_000014.9 scf7180000172811 99.36 True fake: scaffold gap size wrong estimation (local) 77077858 77081708 983250 979368 NC_000014.9 scf7180000172811 99.74 True fake: scaffold gap size wrong estimation (local) 77077139 77077698 984071 983510 NC_000014.9 scf7180000172811 99.64 True fake: scaffold gap size wrong estimation (local) 77063235 77076948 998193 984235 NC_000014.9 scf7180000172811 95.63 True fake: scaffold gap size wrong estimation (local) 77057440 77062964 1004177 998594 NC_000014.9 scf7180000172811 95.69 True fake: scaffold gap size wrong estimation (local) 77056688 77057325 1004980 1004343 NC_000014.9 scf7180000172811 96.39 True indel: indel (> 5bp) 77055908 77056617 1005690 1004981 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 77052774 77055714 1008947 1006001 NC_000014.9 scf7180000172811 99.66 True fake: scaffold gap size wrong estimation (local) 77050334 77051648 1011391 1010075 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 77047393 77048714 1014233 1012903 NC_000014.9 scf7180000172811 97.86 True fake: scaffold gap size wrong estimation (local) 77025001 77047175 1036652 1014372 NC_000014.9 scf7180000172811 98.89 True fake: scaffold gap size wrong estimation (local) 77020328 77024844 1041355 1036768 NC_000014.9 scf7180000172811 99.56 True fake: scaffold gap size wrong estimation (local) 77016130 77016666 1045314 1044778 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 77013718 77016027 1047801 1045492 NC_000014.9 scf7180000172811 99.83 True indel: indel (> 5bp) 77006658 77013698 1054842 1047802 NC_000014.9 scf7180000172811 98.57 True local misassembly 77003616 77006471 1059235 1056380 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 77001873 77003424 1060903 1059352 NC_000014.9 scf7180000172811 99.87 True fake: scaffold gap size wrong estimation (local) 76998066 77001617 1064737 1061150 NC_000014.9 scf7180000172811 99.41 True fake: scaffold gap size wrong estimation (local) 76994324 76997872 1068338 1064880 NC_000014.9 scf7180000172811 97.3 True fake: scaffold gap size wrong estimation (local) 76993444 76994072 1069319 1068691 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 76991920 76992787 1070865 1069998 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76990387 76990887 1072569 1072069 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76987670 76988530 1075134 1074274 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76983813 76987116 1078947 1075644 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76979294 76983149 1083561 1079567 NC_000014.9 scf7180000172811 96.75 True fake: scaffold gap size wrong estimation (local) 76977414 76978995 1085265 1083684 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76975759 76977165 1086934 1085528 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76973711 76975554 1088870 1087078 NC_000014.9 scf7180000172811 96.98 True fake: scaffold gap size wrong estimation (local) 76970605 76973124 1091960 1089536 NC_000014.9 scf7180000172811 96.09 True fake: scaffold gap size wrong estimation (local) 76968294 76969049 1094486 1093731 NC_000014.9 scf7180000172811 99.47 True fake: scaffold gap size wrong estimation (local) 76966564 76967415 1095823 1094972 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76963812 76966334 1098631 1096061 NC_000014.9 scf7180000172811 98.31 True fake: scaffold gap size wrong estimation (local) 76963169 76963842 1099511 1098838 NC_000014.9 scf7180000172811 95.25 True local misassembly 76961441 76962951 1101022 1099512 NC_000014.9 scf7180000172811 98.54 True fake: scaffold gap size wrong estimation (local) 76955440 76960697 1107036 1101878 NC_000014.9 scf7180000172811 97.95 True fake: scaffold gap size wrong estimation (local) 76954155 76955216 1108597 1107536 NC_000014.9 scf7180000172811 97.46 True local misassembly 76953175 76953993 1109416 1108598 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76952427 76953029 1110180 1109579 NC_000014.9 scf7180000172811 99.5 True fake: scaffold gap size wrong estimation (local) 76949700 76952297 1113127 1110530 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76946586 76949416 1116196 1113361 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 76941141 76945694 1121575 1117184 NC_000014.9 scf7180000172811 95.39 True fake: scaffold gap size wrong estimation (local) 76939100 76940927 1123595 1121721 NC_000014.9 scf7180000172811 99.34 True fake: scaffold gap size wrong estimation (local) 76936260 76938799 1126437 1123877 NC_000014.9 scf7180000172811 99.69 True fake: scaffold gap size wrong estimation (local) 76934053 76935996 1128889 1127021 NC_000014.9 scf7180000172811 95.54 True fake: scaffold gap size wrong estimation (local) 76930602 76933953 1132823 1129453 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 76929725 76930420 1133636 1132941 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 31012902 31013865 1133689 1134652 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 76927815 76929523 1136411 1134703 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 31015641 31016585 1136462 1137406 NC_000014.9 scf7180000172811 99.58 True fake: not a misassembly (possible transposable element) 76926794 76927689 1138357 1137462 NC_000014.9 scf7180000172811 97.77 True fake: scaffold gap size wrong estimation (local) 76916935 76925612 1148488 1139792 NC_000014.9 scf7180000172811 99.63 True fake: scaffold gap size wrong estimation (local) 76915813 76916658 1149537 1148683 NC_000014.9 scf7180000172811 99.52 True fake: scaffold gap size wrong estimation (local) 76914712 76915575 1150730 1149867 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76913030 76914496 1152280 1150801 NC_000014.9 scf7180000172811 99.64 True fake: scaffold gap size wrong estimation (local) 76911272 76912793 1154089 1152568 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 76910321 76910952 1154834 1154203 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76908781 76910146 1156442 1155077 NC_000014.9 scf7180000172811 99.34 True fake: scaffold gap size wrong estimation (local) 76906407 76907197 1158892 1158100 NC_000014.9 scf7180000172811 99.5 True fake: scaffold gap size wrong estimation (local) 76902577 76906080 1162574 1159012 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 76898229 76902149 1166822 1162956 NC_000014.9 scf7180000172811 96.07 True fake: scaffold gap size wrong estimation (local) 76893302 76896615 1171905 1168585 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 76890970 76891892 1173942 1173020 NC_000014.9 scf7180000172811 98.16 True local misassembly 76890007 76890969 1175328 1174366 NC_000014.9 scf7180000172811 99.38 True fake: scaffold gap size wrong estimation (local) 76878557 76889408 1186679 1175829 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 76877545 76878340 1187681 1186886 NC_000014.9 scf7180000172811 96.98 True local misassembly 76876680 76877414 1188416 1187682 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76872249 76876542 1192988 1188696 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 76869778 76871868 1195378 1193288 NC_000014.9 scf7180000172811 99.9 True fake: scaffold gap size wrong estimation (local) 76867218 76869485 1197913 1195684 NC_000014.9 scf7180000172811 98.28 True fake: scaffold gap size wrong estimation (local) 76864793 76866963 1200410 1198240 NC_000014.9 scf7180000172811 99.59 True fake: scaffold gap size wrong estimation (local) 76863186 76864417 1202021 1200790 NC_000014.9 scf7180000172811 99.92 True indel: indel (> 5bp) 76862538 76863185 1202675 1202028 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 76859780 76862447 1205463 1202796 NC_000014.9 scf7180000172811 99.14 True fake: scaffold gap size wrong estimation (local) 76857183 76858863 1208288 1206608 NC_000014.9 scf7180000172811 99.94 True local misassembly 76854585 76856584 1210902 1208903 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 76852840 76854429 1212600 1211017 NC_000014.9 scf7180000172811 99.43 True fake: scaffold gap size wrong estimation (local) 76850857 76851542 1214407 1213722 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 76850053 76850623 1215318 1214748 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 76847976 76849614 1217239 1215671 NC_000014.9 scf7180000172811 95.06 True fake: scaffold gap size wrong estimation (local) 76843318 76847929 1222206 1217496 NC_000014.9 scf7180000172811 98.0 True fake: scaffold gap size wrong estimation (local) 76841975 76843139 1223505 1222333 NC_000014.9 scf7180000172811 99.32 True fake: scaffold gap size wrong estimation (local) 76839968 76840595 1225407 1224761 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 76837069 76839870 1228257 1225456 NC_000014.9 scf7180000172811 99.82 True fake: scaffold gap size wrong estimation (local) 76835489 76836552 1229839 1228776 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 76833650 76835374 1231626 1229902 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 76824589 76833438 1240703 1231827 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 76822753 76823868 1242645 1241530 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 76820057 76821601 1245390 1243830 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 101281417 101282369 1247168 1246216 NC_000014.9 scf7180000172811 100.0 True fake: not a misassembly (possible transposable element) 76805029 76819235 1261428 1247219 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 76802096 76804810 1264302 1261588 NC_000014.9 scf7180000172811 99.96 True fake: scaffold gap size wrong estimation (local) 76799567 76801937 1266800 1264429 NC_000014.9 scf7180000172811 99.58 True fake: scaffold gap size wrong estimation (local) 76789977 76799417 1276455 1266945 NC_000014.9 scf7180000172811 99.46 True fake: scaffold gap size wrong estimation (local) 76772145 76789702 1294492 1276650 NC_000014.9 scf7180000172811 98.09 True fake: scaffold gap size wrong estimation (local) 76758857 76771985 1307776 1294630 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 76757956 76758701 1308618 1307873 NC_000014.9 scf7180000172811 96.92 True fake: scaffold gap size wrong estimation (local) 76755520 76757434 1311263 1309349 NC_000014.9 scf7180000172811 99.69 True fake: scaffold gap size wrong estimation (local) 76752027 76755246 1314763 1311545 NC_000014.9 scf7180000172811 99.25 True fake: scaffold gap size wrong estimation (local) 76741201 76742805 1322751 1321148 NC_000014.9 scf7180000172811 99.5 True fake: scaffold gap size wrong estimation (local) 76738265 76740164 1325669 1323770 NC_000014.9 scf7180000172811 99.95 True fake: not a misassembly (possible transposable element) 47685186 47687100 1327590 1325676 NC_000014.9 scf7180000172811 99.95 True fake: not a misassembly (possible transposable element) 76735623 76736590 1328572 1327611 NC_000014.9 scf7180000172811 99.17 True relocation, scaffold gap is present, inconsistency = 29049892 47684506 47685367 1329797 1328936 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 47666452 47683750 1347558 1329886 NC_000014.9 scf7180000172811 97.78 True local misassembly 47661956 47665551 1351667 1348071 NC_000014.9 scf7180000172811 99.78 True fake: scaffold gap size wrong estimation (local) 47646088 47661754 1367513 1351839 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 47636944 47645951 1376618 1367611 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 47626600 47636578 1386602 1376902 NC_000014.9 scf7180000172811 97.07 True fake: scaffold gap size wrong estimation (local) 47609579 47626474 1404647 1387145 NC_000014.9 scf7180000172811 95.45 True fake: scaffold gap size wrong estimation (local) 47595565 47609410 1418631 1404766 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 47593870 47595385 1420385 1418870 NC_000014.9 scf7180000172811 99.01 True fake: scaffold gap size wrong estimation (local) 47577598 47593298 1436574 1420954 NC_000014.9 scf7180000172811 99.13 True fake: scaffold gap size wrong estimation (local) 47570975 47577537 1443560 1437275 NC_000014.9 scf7180000172811 95.66 True fake: scaffold gap size wrong estimation (local) 47563870 47570728 1451145 1444287 NC_000014.9 scf7180000172811 99.75 True fake: scaffold gap size wrong estimation (local) 47562247 47563588 1452988 1451647 NC_000014.9 scf7180000172811 99.55 True fake: scaffold gap size wrong estimation (local) 47561355 47562246 1454305 1453414 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 47560344 47561154 1455440 1454630 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 47540819 47559591 1474980 1456208 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 47537611 47540154 1478162 1475619 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 47531206 47537231 1484476 1478451 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 47508953 47531012 1506998 1484974 NC_000014.9 scf7180000172811 99.71 True fake: scaffold gap size wrong estimation (local) 47505001 47508352 1511128 1507777 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 47503587 47505000 1512914 1511501 NC_000014.9 scf7180000172811 98.37 True local misassembly 47502879 47503422 1513458 1512915 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 47494907 47502878 1521712 1513741 NC_000014.9 scf7180000172811 99.92 True fake: scaffold gap size wrong estimation (local) 47484647 47494831 1532045 1522148 NC_000014.9 scf7180000172811 97.04 True fake: scaffold gap size wrong estimation (local) 47474712 47484670 1542438 1532404 NC_000014.9 scf7180000172811 99.27 True fake: scaffold gap size wrong estimation (local) 47469795 47474541 1547322 1542588 NC_000014.9 scf7180000172811 99.62 True fake: scaffold gap size wrong estimation (local) 47462379 47469502 1554716 1547597 NC_000014.9 scf7180000172811 99.72 True fake: scaffold gap size wrong estimation (local) 47456485 47462178 1560518 1554818 NC_000014.9 scf7180000172811 99.58 True fake: scaffold gap size wrong estimation (local) 47408315 47456302 1608749 1560593 NC_000014.9 scf7180000172811 99.21 True fake: scaffold gap size wrong estimation (local) 47400984 47408068 1615872 1608846 NC_000014.9 scf7180000172811 98.35 True fake: scaffold gap size wrong estimation (local) 47397379 47400728 1619358 1616009 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 47383277 47396355 1633326 1620257 NC_000014.9 scf7180000172811 99.45 True fake: scaffold gap size wrong estimation (local) 47360424 47378550 1655973 1637882 NC_000014.9 scf7180000172811 99.21 True fake: scaffold gap size wrong estimation (local) 47351285 47359099 1665011 1657208 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 47342072 47351080 1674220 1665243 NC_000014.9 scf7180000172811 99.47 True fake: scaffold gap size wrong estimation (local) 47324176 47341904 1692069 1674312 NC_000014.9 scf7180000172811 99.68 True fake: scaffold gap size wrong estimation (local) 47312930 47323464 1703342 1692715 NC_000014.9 scf7180000172811 98.89 True fake: scaffold gap size wrong estimation (local) 47298959 47312686 1717162 1703410 NC_000014.9 scf7180000172811 99.61 True fake: scaffold gap size wrong estimation (local) 47294124 47298699 1721930 1717359 NC_000014.9 scf7180000172811 99.63 True fake: scaffold gap size wrong estimation (local) 47286376 47287577 1723446 1722283 NC_000014.9 scf7180000172811 96.42 True relocation, scaffold gap is present, inconsistency = -7763 47287555 47294118 1730026 1723467 NC_000014.9 scf7180000172811 99.77 True fake: scaffold gap size wrong estimation (local) 47268337 47286512 1749598 1731344 NC_000014.9 scf7180000172811 98.33 True fake: scaffold gap size wrong estimation (local) 47247708 47268240 1770340 1749684 NC_000014.9 scf7180000172811 98.72 True fake: scaffold gap size wrong estimation (local) 47225747 47247334 1792268 1770798 NC_000014.9 scf7180000172811 99.05 True fake: scaffold gap size wrong estimation (local) 47224024 47225118 1793794 1792712 NC_000014.9 scf7180000172811 98.9 True fake: not a misassembly (possible transposable element) 63596491 63597299 1794603 1793795 NC_000014.9 scf7180000172811 99.88 True fake: not a misassembly (possible transposable element) 47198492 47223809 1820229 1794746 NC_000014.9 scf7180000172811 98.79 True fake: scaffold gap size wrong estimation (local) 47177680 47198319 1841048 1820321 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 47166295 47172201 1854821 1848586 NC_000014.9 scf7180000172811 99.78 True fake: scaffold gap size wrong estimation (local) 47165017 47166048 1855971 1854940 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 47158666 47164376 1862327 1856597 NC_000014.9 scf7180000172811 99.84 True fake: scaffold gap size wrong estimation (local) 47150936 47158510 1870071 1862487 NC_000014.9 scf7180000172811 99.56 True fake: scaffold gap size wrong estimation (local) 47130308 47150797 1890674 1870182 NC_000014.9 scf7180000172811 99.13 True fake: scaffold gap size wrong estimation (local) 47119274 47128704 1901613 1892183 NC_000014.9 scf7180000172811 99.97 True fake: scaffold gap size wrong estimation (local) 47114041 47119067 1906802 1901784 NC_000014.9 scf7180000172811 99.56 True indel: indel (<= 5bp) 47108690 47113912 1912154 1906933 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 47104504 47105478 1916193 1915227 NC_000014.9 scf7180000172811 97.34 True local misassembly 47087462 47104287 1933160 1916322 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 47080005 47087260 1940551 1933295 NC_000014.9 scf7180000172811 99.99 True fake: scaffold gap size wrong estimation (local) 47054852 47079753 1965403 1940661 NC_000014.9 scf7180000172811 99.17 True fake: scaffold gap size wrong estimation (local) 47046060 47054378 1974435 1965859 NC_000014.9 scf7180000172811 96.11 True fake: scaffold gap size wrong estimation (local) 47038916 47045761 1981367 1974522 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 47036188 47038067 1983978 1982093 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 47019814 47036068 2000356 1984091 NC_000014.9 scf7180000172811 99.72 True fake: scaffold gap size wrong estimation (local) 47002709 47019621 2017590 2000524 NC_000014.9 scf7180000172811 99.14 True fake: scaffold gap size wrong estimation (local) 47000452 47002470 2019774 2017756 NC_000014.9 scf7180000172811 99.9 True local misassembly 46998211 47000319 2021883 2019775 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 46994927 46998210 2027446 2024163 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 46983076 46993622 2038713 2028167 NC_000014.9 scf7180000172811 99.89 True fake: scaffold gap size wrong estimation (local) 46981248 46982471 2040497 2039274 NC_000014.9 scf7180000172811 95.34 True indel: indel (> 5bp) 46977856 46981171 2043826 2040511 NC_000014.9 scf7180000172811 99.91 True indel: indel (<= 5bp) 46974628 46977854 2047053 2043827 NC_000014.9 scf7180000172811 99.91 True fake: scaffold gap size wrong estimation (local) 46973906 46974627 2048326 2047605 NC_000014.9 scf7180000172811 99.86 True indel: indel (<= 5bp) 46971409 46973903 2050821 2048327 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 46970118 46970908 2051848 2051058 NC_000014.9 scf7180000172811 99.75 True relocation, scaffold gap is present, inconsistency = 8311310 55284634 55285181 2054264 2054811 NC_000014.9 scf7180000172811 100.0 True local misassembly 55285533 55286916 2054812 2056195 NC_000014.9 scf7180000172811 99.86 True fake: scaffold gap size wrong estimation (local) 55287174 55290136 2056522 2059512 NC_000014.9 scf7180000172811 99.8 True fake: scaffold gap size wrong estimation (local) 55290411 55293330 2059658 2062568 NC_000014.9 scf7180000172811 99.62 True fake: scaffold gap size wrong estimation (local) 55294510 55295394 2063827 2064711 NC_000014.9 scf7180000172811 100.0 True local misassembly 55295619 55296386 2064712 2065479 NC_000014.9 scf7180000172811 96.74 True fake: scaffold gap size wrong estimation (local) 55297163 55300383 2066477 2069697 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 55300521 55305355 2069809 2074651 NC_000014.9 scf7180000172811 99.79 True fake: scaffold gap size wrong estimation (local) 55305496 55316535 2074853 2086148 NC_000014.9 scf7180000172811 98.35 True fake: scaffold gap size wrong estimation (local) 55317462 55318329 2087051 2087918 NC_000014.9 scf7180000172811 99.77 True fake: scaffold gap size wrong estimation (local) 55319893 55322068 2089290 2091864 NC_000014.9 scf7180000172811 99.57 True fake: scaffold gap size wrong estimation (local) 55322312 55322916 2091936 2092540 NC_000014.9 scf7180000172811 100.0 True fake: scaffold gap size wrong estimation (local) 55323512 55325502 2093229 2095219 NC_000014.9 scf7180000172811 99.9 True fake: scaffold gap size wrong estimation (local) 55325639 55331561 2095327 2101317 NC_000014.9 scf7180000172811 99.64 True fake: scaffold gap size wrong estimation (local) 55331984 55338062 2101823 2107926 NC_000014.9 scf7180000172811 99.87 True fake: scaffold gap size wrong estimation (local) 55338926 55343242 2108736 2113077 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 55343503 55359917 2113300 2129757 NC_000014.9 scf7180000172811 99.64 True fake: scaffold gap size wrong estimation (local) 55361395 55363024 2130849 2132478 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 55365209 55367594 2134761 2137146 NC_000014.9 scf7180000172811 98.99 True fake: scaffold gap size wrong estimation (local) 55367727 55368253 2137265 2137790 NC_000014.9 scf7180000172811 99.81 True fake: scaffold gap size wrong estimation (local) 55368481 55370768 2137988 2140277 NC_000014.9 scf7180000172811 99.83 True fake: scaffold gap size wrong estimation (local) 55370863 55371542 2140465 2141144 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 55371735 55375490 2141255 2144951 NC_000014.9 scf7180000172811 97.6 True fake: scaffold gap size wrong estimation (local) 55375583 55377143 2145017 2146577 NC_000014.9 scf7180000172811 99.87 True fake: scaffold gap size wrong estimation (local) 55377302 55385454 2146735 2154892 NC_000014.9 scf7180000172811 99.94 True fake: scaffold gap size wrong estimation (local) 55385538 55387953 2154980 2157395 NC_000014.9 scf7180000172811 99.88 True fake: scaffold gap size wrong estimation (local) 55393365 55394027 2165173 2165834 NC_000014.9 scf7180000172811 99.85 True fake: scaffold gap size wrong estimation (local) 55394806 55400682 2166439 2172379 NC_000014.9 scf7180000172811 99.18 True fake: scaffold gap size wrong estimation (local) 55400932 55402820 2172578 2174466 NC_000014.9 scf7180000172811 99.95 True fake: scaffold gap size wrong estimation (local) 55403050 55407146 2174618 2178721 NC_000014.9 scf7180000172811 99.98 True CONTIG scf7180000172811 2178721 misassembled 77291968 77292722 755 1 NC_000014.9 scf7180000172812 100.0 True CONTIG scf7180000172812 756 correct 102426179 102426694 1 516 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 102429065 102431034 2593 4562 NC_000014.9 scf7180000172813 98.88 True fake: scaffold gap size wrong estimation (local) 102431584 102432298 5161 5875 NC_000014.9 scf7180000172813 96.92 True fake: scaffold gap size wrong estimation (local) 102433647 102438872 7172 12390 NC_000014.9 scf7180000172813 97.01 True fake: scaffold gap size wrong estimation (local) 102439089 102441114 12682 14707 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 102442200 102447624 15759 21265 NC_000014.9 scf7180000172813 98.78 True fake: scaffold gap size wrong estimation (local) 102447754 102453326 21363 26967 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 102453955 102455670 27548 29263 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 102455811 102456601 29499 30289 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 102456804 102457878 30377 31451 NC_000014.9 scf7180000172813 99.72 True fake: scaffold gap size wrong estimation (local) 102458135 102458951 31844 32660 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 102459148 102460433 32767 34052 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 102460917 102463217 34510 36810 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 102463499 102467120 37155 40707 NC_000014.9 scf7180000172813 97.97 True fake: scaffold gap size wrong estimation (local) 102468412 102470653 41852 44093 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 102471165 102474150 44544 47529 NC_000014.9 scf7180000172813 99.9 True local misassembly 102474507 102476121 47530 49144 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 102476370 102476999 49500 50129 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 102477972 102480251 51001 53291 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 102481344 102482240 54478 55374 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 102483069 102483805 56335 57072 NC_000014.9 scf7180000172813 99.32 True fake: scaffold gap size wrong estimation (local) 102484063 102484814 57193 57944 NC_000014.9 scf7180000172813 99.6 True fake: scaffold gap size wrong estimation (local) 102484934 102487678 58145 60889 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 102488539 102489498 61689 62632 NC_000014.9 scf7180000172813 97.44 True fake: scaffold gap size wrong estimation (local) 102489704 102494360 62747 67621 NC_000014.9 scf7180000172813 95.82 True fake: scaffold gap size wrong estimation (local) 102495196 102498022 68486 71312 NC_000014.9 scf7180000172813 99.96 True indel: indel (> 5bp) 102498023 102501633 71337 74947 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 102501634 102503300 75394 77060 NC_000014.9 scf7180000172813 99.76 True local misassembly 102503536 102505279 77061 78804 NC_000014.9 scf7180000172813 98.62 True fake: scaffold gap size wrong estimation (local) 102505280 102509540 78825 83085 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 102509805 102515473 83307 89029 NC_000014.9 scf7180000172813 99.09 True fake: scaffold gap size wrong estimation (local) 102516344 102520270 89867 93806 NC_000014.9 scf7180000172813 98.77 True fake: scaffold gap size wrong estimation (local) 102523501 102525618 96761 98878 NC_000014.9 scf7180000172813 99.76 True fake: scaffold gap size wrong estimation (local) 102527288 102528215 100590 101517 NC_000014.9 scf7180000172813 99.68 True fake: scaffold gap size wrong estimation (local) 102530787 102531337 103429 103979 NC_000014.9 scf7180000172813 96.01 True relocation, scaffold gap is present, inconsistency = -31068187 71463237 71463854 104066 104683 NC_000014.9 scf7180000172813 99.35 True fake: scaffold gap size wrong estimation (local) 71464716 71480132 105474 120902 NC_000014.9 scf7180000172813 99.37 True fake: scaffold gap size wrong estimation (local) 71480636 71495893 121200 137053 NC_000014.9 scf7180000172813 96.76 True fake: scaffold gap size wrong estimation (local) 71496075 71496939 137236 138099 NC_000014.9 scf7180000172813 99.65 True fake: scaffold gap size wrong estimation (local) 71497162 71510181 138229 151185 NC_000014.9 scf7180000172813 98.44 True fake: scaffold gap size wrong estimation (local) 71510358 71512396 151447 153485 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 71514085 71515859 155371 157145 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 71516796 71525285 158004 166513 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 71525456 71546393 166630 187592 NC_000014.9 scf7180000172813 98.21 True fake: scaffold gap size wrong estimation (local) 71546501 71547293 187725 188517 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 71547491 71552390 188643 193549 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 71552640 71561610 193767 202905 NC_000014.9 scf7180000172813 97.7 True fake: scaffold gap size wrong estimation (local) 71561746 71562770 203033 204057 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 71562878 71564537 204117 205776 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 71564673 71570297 205875 211499 NC_000014.9 scf7180000172813 99.95 True fake: not a misassembly (possible transposable element) 64374106 64374940 211743 212577 NC_000014.9 scf7180000172813 99.88 True fake: not a misassembly (possible transposable element) 71570474 71571656 212578 213760 NC_000014.9 scf7180000172813 100.0 True relocation, scaffold gap is present, inconsistency = 19714514 51854744 51855939 214976 213781 NC_000014.9 scf7180000172813 99.92 True relocation, inconsistency = 12520888 64376828 64377903 214977 216052 NC_000014.9 scf7180000172813 99.82 True relocation, scaffold gap is present, inconsistency = 10825283 75205359 75205974 218840 218225 NC_000014.9 scf7180000172813 99.68 True fake: scaffold gap size wrong estimation (local) 75200419 75203053 223520 220869 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 75197931 75199954 226056 224046 NC_000014.9 scf7180000172813 99.3 True fake: scaffold gap size wrong estimation (local) 75195158 75197672 228906 226392 NC_000014.9 scf7180000172813 99.92 True relocation, inconsistency = 12848155 62345416 62347002 228907 230493 NC_000014.9 scf7180000172813 99.63 True fake: scaffold gap size wrong estimation (local) 62347003 62349620 232245 234862 NC_000014.9 scf7180000172813 99.77 True indel: indel (<= 5bp) 62349622 62350489 234863 235730 NC_000014.9 scf7180000172813 99.77 True indel: indel (<= 5bp) 62350494 62351096 235731 236333 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 62351894 62363238 237023 248759 NC_000014.9 scf7180000172813 97.04 True fake: scaffold gap size wrong estimation (local) 62363439 62383933 248905 269353 NC_000014.9 scf7180000172813 99.62 True fake: scaffold gap size wrong estimation (local) 62384107 62386486 269520 271896 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 62387020 62388105 272314 273399 NC_000014.9 scf7180000172813 99.63 True indel: indel (<= 5bp) 62388197 62394292 273495 279590 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 62394565 62395956 279908 281270 NC_000014.9 scf7180000172813 97.52 True fake: scaffold gap size wrong estimation (local) 62397729 62406970 282944 292192 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 62407143 62417152 292408 302412 NC_000014.9 scf7180000172813 99.85 True fake: scaffold gap size wrong estimation (local) 62417287 62433989 302514 319211 NC_000014.9 scf7180000172813 99.7 True fake: scaffold gap size wrong estimation (local) 62434452 62446479 319564 331896 NC_000014.9 scf7180000172813 97.4 True fake: scaffold gap size wrong estimation (local) 62447321 62448061 332509 333249 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 62448403 62473248 333577 358371 NC_000014.9 scf7180000172813 99.48 True fake: scaffold gap size wrong estimation (local) 62473454 62489806 358510 374860 NC_000014.9 scf7180000172813 99.63 True fake: scaffold gap size wrong estimation (local) 62489952 62495158 374968 380338 NC_000014.9 scf7180000172813 96.7 True fake: scaffold gap size wrong estimation (local) 62495425 62496777 380647 381999 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 62497997 62522541 383136 407657 NC_000014.9 scf7180000172813 99.31 True relocation, scaffold gap is present, inconsistency = -2856561 59669098 59672628 410775 414309 NC_000014.9 scf7180000172813 99.49 True fake: scaffold gap size wrong estimation (local) 59672914 59692674 414573 434332 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 59692873 59698351 434841 440319 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 59698712 59712712 442865 456915 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 59712914 59714023 456996 458105 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 59714024 59715571 458337 459884 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 59715820 59716766 460030 460977 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 59716968 59723370 461175 467584 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 59723571 59739302 467764 483677 NC_000014.9 scf7180000172813 98.73 True fake: scaffold gap size wrong estimation (local) 59739499 59748882 483783 493194 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 59750747 59763548 494967 507777 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 59763775 59764379 507967 508571 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 59764588 59765974 508739 510125 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 59766179 59770289 510264 514375 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 59771045 59784181 515080 528185 NC_000014.9 scf7180000172813 99.66 True fake: scaffold gap size wrong estimation (local) 59784373 59800528 528317 544618 NC_000014.9 scf7180000172813 99.12 True fake: scaffold gap size wrong estimation (local) 59800644 59806022 544881 550259 NC_000014.9 scf7180000172813 99.94 True fake: not a misassembly (possible transposable element) 39542474 39543531 551563 550506 NC_000014.9 scf7180000172813 99.55 True fake: not a misassembly (possible transposable element) 59806492 59819394 551564 564466 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 59820377 59821868 565095 566586 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 59821806 59827108 567545 572942 NC_000014.9 scf7180000172813 98.59 True indel: indel (<= 5bp) 59827301 59841513 573136 587348 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 59842052 59851604 587769 597320 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 59851822 59854392 597515 600097 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 59854647 59859477 600365 605196 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 59859835 59874824 605478 620479 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 59876247 59878678 621553 623984 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 59879171 59891019 624554 636265 NC_000014.9 scf7180000172813 98.69 True fake: scaffold gap size wrong estimation (local) 59893500 59900096 638496 645092 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 59900303 59907931 645236 652851 NC_000014.9 scf7180000172813 99.76 True fake: scaffold gap size wrong estimation (local) 59908078 59908923 652898 653767 NC_000014.9 scf7180000172813 99.53 True fake: scaffold gap size wrong estimation (local) 59909605 59913938 654353 658686 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 59914331 59935051 658991 679695 NC_000014.9 scf7180000172813 99.49 True indel: indel (> 5bp) 59935148 59942341 679781 686898 NC_000014.9 scf7180000172813 98.65 True fake: scaffold gap size wrong estimation (local) 59942303 59946500 687496 691547 NC_000014.9 scf7180000172813 96.43 True fake: scaffold gap size wrong estimation (local) 59957847 59958609 704099 704861 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 59958898 59965669 705120 711830 NC_000014.9 scf7180000172813 99.01 True fake: scaffold gap size wrong estimation (local) 59965806 59970493 711940 716618 NC_000014.9 scf7180000172813 99.76 True fake: scaffold gap size wrong estimation (local) 59970603 59979343 716815 725451 NC_000014.9 scf7180000172813 98.59 True fake: scaffold gap size wrong estimation (local) 59979923 59989952 725970 735998 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 59990664 59991786 736674 737796 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 59994965 59995813 743634 744484 NC_000014.9 scf7180000172813 99.41 True fake: scaffold gap size wrong estimation (local) 59995984 60009806 744598 758607 NC_000014.9 scf7180000172813 98.82 True fake: scaffold gap size wrong estimation (local) 60009986 60023706 758786 772466 NC_000014.9 scf7180000172813 99.49 True fake: scaffold gap size wrong estimation (local) 60025063 60034018 773706 782639 NC_000014.9 scf7180000172813 99.57 True fake: scaffold gap size wrong estimation (local) 60034285 60035103 782735 783553 NC_000014.9 scf7180000172813 99.76 True fake: scaffold gap size wrong estimation (local) 60035122 60035960 783781 784619 NC_000014.9 scf7180000172813 99.76 True indel: indel (<= 5bp) 60035961 60036728 784621 785388 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60038880 60039428 787632 788179 NC_000014.9 scf7180000172813 97.81 True fake: scaffold gap size wrong estimation (local) 60042328 60043766 795529 796967 NC_000014.9 scf7180000172813 98.89 True fake: scaffold gap size wrong estimation (local) 60043767 60045058 796978 798269 NC_000014.9 scf7180000172813 99.15 True fake: scaffold gap size wrong estimation (local) 60045059 60046881 798281 800103 NC_000014.9 scf7180000172813 99.34 True indel: indel (<= 5bp) 60046882 60049464 800109 802691 NC_000014.9 scf7180000172813 99.15 True relocation, scaffold gap is present, inconsistency = 2305612 57738761 57741219 805200 802742 NC_000014.9 scf7180000172813 99.88 True indel: indel (> 5bp) 57737099 57738748 806850 805201 NC_000014.9 scf7180000172813 99.82 True indel: indel (<= 5bp) 57735783 57736948 808169 807004 NC_000014.9 scf7180000172813 98.11 True fake: scaffold gap size wrong estimation (local) 57733833 57735782 810545 808596 NC_000014.9 scf7180000172813 99.74 True fake: not a misassembly (possible transposable element) 60050214 60055719 811065 816560 NC_000014.9 scf7180000172813 99.67 True fake: not a misassembly (possible transposable element) 57730798 57733362 819217 816653 NC_000014.9 scf7180000172813 99.92 True indel: indel (> 5bp) 57729613 57730403 820388 819598 NC_000014.9 scf7180000172813 99.87 True fake: not a misassembly (possible transposable element) 60055757 60059425 820757 824397 NC_000014.9 scf7180000172813 98.38 True fake: not a misassembly (possible transposable element) 57727718 57728425 825176 824469 NC_000014.9 scf7180000172813 99.72 True relocation, scaffold gap is present, inconsistency = 2330829 60059286 60060367 825208 826289 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 60061297 60062903 827728 829334 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 60063139 60065130 830070 832061 NC_000014.9 scf7180000172813 99.85 True fake: scaffold gap size wrong estimation (local) 60065673 60074062 832859 841401 NC_000014.9 scf7180000172813 98.33 True fake: scaffold gap size wrong estimation (local) 60074295 60075403 841628 842736 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 60079276 60088098 848422 857238 NC_000014.9 scf7180000172813 99.78 True fake: scaffold gap size wrong estimation (local) 60088073 60100415 857727 870108 NC_000014.9 scf7180000172813 99.42 True fake: scaffold gap size wrong estimation (local) 60100530 60104113 870195 873804 NC_000014.9 scf7180000172813 99.69 True fake: scaffold gap size wrong estimation (local) 60104335 60112932 874060 883325 NC_000014.9 scf7180000172813 95.32 True fake: scaffold gap size wrong estimation (local) 60113055 60128979 883456 899277 NC_000014.9 scf7180000172813 99.21 True fake: scaffold gap size wrong estimation (local) 60129230 60130262 899365 900397 NC_000014.9 scf7180000172813 99.81 True local misassembly 60130863 60132995 900874 903006 NC_000014.9 scf7180000172813 99.06 True fake: scaffold gap size wrong estimation (local) 60132996 60135628 903413 906045 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 60135803 60137832 906202 908231 NC_000014.9 scf7180000172813 98.97 True fake: scaffold gap size wrong estimation (local) 60138071 60145434 908432 915748 NC_000014.9 scf7180000172813 99.26 True fake: scaffold gap size wrong estimation (local) 60145621 60155189 915843 925332 NC_000014.9 scf7180000172813 98.89 True fake: scaffold gap size wrong estimation (local) 60155343 60158010 925492 928159 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 60158252 60160076 928401 930225 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60160356 60230218 930376 1001050 NC_000014.9 scf7180000172813 98.78 True fake: scaffold gap size wrong estimation (local) 60231525 60236758 1002221 1007454 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 60237972 60239842 1008632 1010502 NC_000014.9 scf7180000172813 99.41 True fake: scaffold gap size wrong estimation (local) 60240013 60243655 1010649 1014291 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60243843 60247479 1014381 1018091 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60247654 60249560 1018214 1020120 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60249971 60255196 1020521 1025746 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60255446 60280177 1025957 1051048 NC_000014.9 scf7180000172813 97.8 True fake: scaffold gap size wrong estimation (local) 60280281 60284388 1051136 1055243 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60284637 60318497 1055420 1089273 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 60318694 60332493 1089392 1103223 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 60332664 60334066 1103353 1104755 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60334348 60336336 1105058 1107046 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 60337978 60340002 1108591 1110614 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 60343041 60368849 1113336 1139064 NC_000014.9 scf7180000172813 99.59 True fake: scaffold gap size wrong estimation (local) 60368924 60374649 1139143 1144867 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 60376752 60377404 1147223 1147875 NC_000014.9 scf7180000172813 100.0 True relocation, inconsistency = -17565521 42811884 42814744 1147876 1150648 NC_000014.9 scf7180000172813 96.73 True fake: scaffold gap size wrong estimation (local) 42815079 42817278 1151287 1153486 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 42817279 42818910 1155210 1156841 NC_000014.9 scf7180000172813 99.88 True indel: indel (> 5bp) 42818990 42819652 1156842 1157504 NC_000014.9 scf7180000172813 96.98 True local misassembly 42819771 42820972 1157505 1158706 NC_000014.9 scf7180000172813 98.34 True fake: scaffold gap size wrong estimation (local) 42820973 42822337 1158717 1160081 NC_000014.9 scf7180000172813 98.9 True indel: indel (> 5bp) 42822354 42823466 1160082 1161194 NC_000014.9 scf7180000172813 97.84 True indel: indel (<= 5bp) 42823471 42825646 1161195 1163370 NC_000014.9 scf7180000172813 98.85 True fake: scaffold gap size wrong estimation (local) 42825647 42826178 1163638 1164169 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 42826488 42828974 1164996 1167482 NC_000014.9 scf7180000172813 99.08 True indel: indel (<= 5bp) 42828976 42830190 1167483 1168697 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 42831211 42839771 1169487 1178047 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 42839975 42845902 1178235 1184129 NC_000014.9 scf7180000172813 99.25 True fake: scaffold gap size wrong estimation (local) 42846238 42849900 1184535 1188197 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 42850016 42853196 1188218 1191449 NC_000014.9 scf7180000172813 99.43 True fake: scaffold gap size wrong estimation (local) 42853313 42867689 1191567 1205979 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 42868905 42871648 1207024 1209767 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 42871767 42882732 1209856 1220821 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 42883150 42888119 1221093 1226062 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 42889034 42899080 1226983 1237271 NC_000014.9 scf7180000172813 97.93 True fake: scaffold gap size wrong estimation (local) 42899270 42900883 1237507 1239120 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 42901923 42902744 1239928 1240749 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 42903012 42914957 1241426 1253782 NC_000014.9 scf7180000172813 96.87 True fake: scaffold gap size wrong estimation (local) 42914958 42915656 1254627 1255325 NC_000014.9 scf7180000172813 99.43 True fake: scaffold gap size wrong estimation (local) 42916698 42924824 1256201 1264762 NC_000014.9 scf7180000172813 95.49 True fake: scaffold gap size wrong estimation (local) 42926235 42938322 1266312 1278483 NC_000014.9 scf7180000172813 99.26 True fake: scaffold gap size wrong estimation (local) 42938878 42950833 1279059 1291013 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 42951002 42954113 1291140 1294247 NC_000014.9 scf7180000172813 99.78 True fake: scaffold gap size wrong estimation (local) 42958886 42967646 1301236 1309993 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 42973078 42989864 1317593 1334317 NC_000014.9 scf7180000172813 99.47 True fake: scaffold gap size wrong estimation (local) 42990020 42992470 1334540 1336991 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 42992663 42997739 1337140 1342242 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 43000137 43017042 1344331 1361174 NC_000014.9 scf7180000172813 99.63 True fake: scaffold gap size wrong estimation (local) 43017447 43062692 1361506 1406881 NC_000014.9 scf7180000172813 98.66 True fake: scaffold gap size wrong estimation (local) 43068147 43087107 1413299 1432206 NC_000014.9 scf7180000172813 99.29 True fake: scaffold gap size wrong estimation (local) 43087359 43090011 1432371 1435010 NC_000014.9 scf7180000172813 99.28 True fake: scaffold gap size wrong estimation (local) 43090229 43093075 1435207 1438172 NC_000014.9 scf7180000172813 96.27 True fake: not a misassembly (possible transposable element) 41090212 41092062 1438173 1440023 NC_000014.9 scf7180000172813 99.95 True fake: not a misassembly (possible transposable element) 43094016 43098332 1440362 1444681 NC_000014.9 scf7180000172813 99.24 True fake: scaffold gap size wrong estimation (local) 43098524 43107826 1445181 1454486 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 43108529 43109446 1455477 1456394 NC_000014.9 scf7180000172813 99.78 True local misassembly 43107729 43126108 1456415 1474987 NC_000014.9 scf7180000172813 98.02 True fake: not a misassembly (possible transposable element) 43092834 43093418 1475008 1475590 NC_000014.9 scf7180000172813 98.8 True fake: not a misassembly (possible transposable element) 43126010 43127802 1475673 1477467 NC_000014.9 scf7180000172813 99.44 True fake: scaffold gap size wrong estimation (local) 43128947 43144025 1478466 1493654 NC_000014.9 scf7180000172813 99.14 True fake: scaffold gap size wrong estimation (local) 43144289 43154157 1493951 1503819 NC_000014.9 scf7180000172813 99.99 True fake: scaffold gap size wrong estimation (local) 43154430 43156741 1504137 1506458 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 43156951 43199126 1506659 1548818 NC_000014.9 scf7180000172813 99.83 True relocation, inconsistency = 54466760 97665900 97671087 1548832 1554019 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 97671230 97675265 1554126 1558161 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 97675403 97676280 1558284 1559161 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 97676427 97677471 1559299 1560447 NC_000014.9 scf7180000172813 98.96 True local misassembly 97678307 97679548 1561018 1562354 NC_000014.9 scf7180000172813 96.54 True fake: scaffold gap size wrong estimation (local) 97680605 97728916 1563305 1611330 NC_000014.9 scf7180000172813 98.06 True fake: scaffold gap size wrong estimation (local) 97729767 97733371 1612117 1615706 NC_000014.9 scf7180000172813 99.33 True fake: scaffold gap size wrong estimation (local) 97733517 97739920 1615809 1622269 NC_000014.9 scf7180000172813 95.22 True relocation, scaffold gap is present, inconsistency = -51170579 46569394 46577680 1622322 1630610 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 46577928 46581663 1631102 1634838 NC_000014.9 scf7180000172813 99.52 True fake: not a misassembly (possible transposable element) 97740663 97743460 1635171 1637968 NC_000014.9 scf7180000172813 99.75 True fake: not a misassembly (possible transposable element) 46581544 46582129 1638070 1638655 NC_000014.9 scf7180000172813 99.83 True relocation, scaffold gap is present, inconsistency = 51161381 97743561 97744220 1638706 1639365 NC_000014.9 scf7180000172813 100.0 True indel: indel (<= 5bp) 97744221 97745735 1639367 1640881 NC_000014.9 scf7180000172813 99.67 True fake: scaffold gap size wrong estimation (local) 97745736 97752515 1642545 1649324 NC_000014.9 scf7180000172813 99.59 True indel: indel (<= 5bp) 97752516 97753667 1649326 1650477 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 97753844 97784315 1650789 1681483 NC_000014.9 scf7180000172813 98.54 True fake: scaffold gap size wrong estimation (local) 97785389 97786544 1682539 1683694 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 97786545 97787525 1684064 1685044 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 97788429 97790625 1686440 1688636 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 70432847 70433620 1688687 1689460 NC_000014.9 scf7180000172813 99.87 True fake: not a misassembly (possible transposable element) 97790819 97791880 1689481 1690542 NC_000014.9 scf7180000172813 99.91 True fake: not a misassembly (possible transposable element) 20570335 20571044 1692012 1691303 NC_000014.9 scf7180000172813 99.3 True fake: not a misassembly (possible transposable element) 97792010 97799031 1692079 1699100 NC_000014.9 scf7180000172813 99.87 True fake: not a misassembly (possible transposable element) 70434816 70436051 1699121 1700356 NC_000014.9 scf7180000172813 99.76 True fake: not a misassembly (possible transposable element) 97799323 97801155 1700428 1702260 NC_000014.9 scf7180000172813 99.78 True indel: indel (> 5bp) 97801168 97803084 1702261 1704177 NC_000014.9 scf7180000172813 99.69 True indel: indel (<= 5bp) 97803085 97805618 1704180 1706713 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 97805619 97808722 1706730 1709833 NC_000014.9 scf7180000172813 99.52 True fake: scaffold gap size wrong estimation (local) 97808856 97810232 1716694 1718070 NC_000014.9 scf7180000172813 99.35 True indel: indel (<= 5bp) 97810233 97815014 1718072 1722853 NC_000014.9 scf7180000172813 99.81 True indel: indel (> 5bp) 97815046 97816613 1722873 1724440 NC_000014.9 scf7180000172813 98.15 True relocation, scaffold gap is present, inconsistency = -27373571 70443093 70454970 1724491 1736204 NC_000014.9 scf7180000172813 97.21 True relocation, scaffold gap is present, inconsistency = 27362804 97817825 97820632 1736255 1739067 NC_000014.9 scf7180000172813 99.43 True fake: not a misassembly (possible transposable element) 33867111 33867719 1739676 1739068 NC_000014.9 scf7180000172813 99.68 True fake: not a misassembly (possible transposable element) 97820414 97830006 1739697 1749325 NC_000014.9 scf7180000172813 99.53 True fake: scaffold gap size wrong estimation (local) 97830258 97834189 1749544 1753500 NC_000014.9 scf7180000172813 99.57 True fake: scaffold gap size wrong estimation (local) 97835374 97849153 1754584 1768367 NC_000014.9 scf7180000172813 99.68 True fake: scaffold gap size wrong estimation (local) 97849392 97858445 1768510 1777539 NC_000014.9 scf7180000172813 99.54 True fake: scaffold gap size wrong estimation (local) 97858718 97867797 1777750 1786771 NC_000014.9 scf7180000172813 99.14 True fake: scaffold gap size wrong estimation (local) 97868989 97881602 1787887 1800499 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 97881854 97901182 1800705 1820345 NC_000014.9 scf7180000172813 98.72 True fake: scaffold gap size wrong estimation (local) 97902501 97904551 1821661 1823631 NC_000014.9 scf7180000172813 95.81 True fake: scaffold gap size wrong estimation (local) 97904954 97933075 1824006 1852617 NC_000014.9 scf7180000172813 96.34 True fake: scaffold gap size wrong estimation (local) 97933340 97953617 1852857 1873144 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 97953922 97971031 1873373 1890550 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 97971189 97988574 1890656 1908045 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 97988828 97990114 1908219 1909503 NC_000014.9 scf7180000172813 99.53 True fake: scaffold gap size wrong estimation (local) 97990199 98002551 1909601 1921944 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 98005119 98010434 1924533 1929691 NC_000014.9 scf7180000172813 96.95 True fake: scaffold gap size wrong estimation (local) 98010706 98020920 1929867 1939964 NC_000014.9 scf7180000172813 97.63 True fake: scaffold gap size wrong estimation (local) 98021111 98058836 1940093 1977985 NC_000014.9 scf7180000172813 99.59 True fake: scaffold gap size wrong estimation (local) 98059086 98078900 1978241 1998053 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 98079064 98086041 1998180 2005244 NC_000014.9 scf7180000172813 99.05 True fake: scaffold gap size wrong estimation (local) 98086816 98089205 2006216 2008605 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 98089487 98090398 2009081 2009992 NC_000014.9 scf7180000172813 99.78 True local misassembly 98086118 98088092 2010096 2012070 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 98090763 98102090 2012123 2023616 NC_000014.9 scf7180000172813 98.83 True indel: indel (> 5bp) 98102135 98106821 2023673 2028359 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 98107006 98144627 2028380 2066053 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 98144792 98149921 2066208 2071337 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 98150162 98196205 2071570 2117554 NC_000014.9 scf7180000172813 99.72 True fake: scaffold gap size wrong estimation (local) 98196399 98229187 2117660 2150471 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 98229440 98239617 2150692 2160876 NC_000014.9 scf7180000172813 99.73 True fake: scaffold gap size wrong estimation (local) 98239903 98247496 2161073 2168668 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 98247762 98257641 2168845 2178721 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 98257906 98260193 2178940 2181227 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 98260387 98263035 2181360 2184008 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 98263178 98283059 2184111 2203992 NC_000014.9 scf7180000172813 99.67 True fake: scaffold gap size wrong estimation (local) 98283356 98289437 2204551 2210633 NC_000014.9 scf7180000172813 99.64 True fake: scaffold gap size wrong estimation (local) 98289789 98291878 2211367 2213456 NC_000014.9 scf7180000172813 99.86 True indel: indel (> 5bp) 98291906 98296937 2213464 2218495 NC_000014.9 scf7180000172813 99.44 True indel: indel (> 5bp) 98296982 98303321 2218496 2224835 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 98303322 98305201 2225226 2227105 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 98306051 98308257 2227908 2230121 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 98308512 98312830 2230404 2234722 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 98313124 98326536 2234850 2248116 NC_000014.9 scf7180000172813 97.81 True fake: scaffold gap size wrong estimation (local) 98326674 98330447 2248202 2251959 NC_000014.9 scf7180000172813 99.21 True fake: scaffold gap size wrong estimation (local) 98330680 98336013 2252174 2257529 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 98336286 98342812 2257744 2264267 NC_000014.9 scf7180000172813 99.4 True fake: scaffold gap size wrong estimation (local) 98342937 98350929 2264374 2272387 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 98351207 98398495 2272592 2320247 NC_000014.9 scf7180000172813 98.12 True relocation, scaffold gap is present, inconsistency = -62652742 35745787 35748374 2320281 2322868 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35748849 35751558 2323693 2326402 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35751817 35755096 2327845 2331124 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35755097 35757121 2331331 2333355 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35757394 35758049 2333619 2334274 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35758253 35759715 2334393 2335855 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35759888 35767443 2336011 2343622 NC_000014.9 scf7180000172813 98.59 True fake: scaffold gap size wrong estimation (local) 35767612 35768884 2343758 2345030 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35768901 35771173 2345083 2347323 NC_000014.9 scf7180000172813 98.49 True fake: scaffold gap size wrong estimation (local) 35771303 35777674 2347430 2353924 NC_000014.9 scf7180000172813 98.35 True fake: scaffold gap size wrong estimation (local) 35777817 35786091 2354242 2362540 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 35786589 35787756 2362982 2364149 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35788120 35789374 2364536 2365790 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 35789536 35790455 2365915 2366855 NC_000014.9 scf7180000172813 99.54 True fake: scaffold gap size wrong estimation (local) 35790685 35791491 2367197 2368003 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 35791912 35792768 2368452 2369291 NC_000014.9 scf7180000172813 97.77 True fake: scaffold gap size wrong estimation (local) 35793454 35794516 2370037 2371099 NC_000014.9 scf7180000172813 95.2 True fake: not a misassembly (possible transposable element) 47038072 47038907 2371935 2371100 NC_000014.9 scf7180000172813 99.89 True fake: not a misassembly (possible transposable element) 35794660 35796994 2371987 2374259 NC_000014.9 scf7180000172813 97.19 True fake: scaffold gap size wrong estimation (local) 35797926 35804042 2375213 2381399 NC_000014.9 scf7180000172813 97.57 True fake: scaffold gap size wrong estimation (local) 35804589 35805269 2381920 2382615 NC_000014.9 scf7180000172813 99.23 True fake: scaffold gap size wrong estimation (local) 35805842 35811481 2383180 2388819 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 35812319 35812819 2389499 2389999 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 35813007 35815014 2390307 2392314 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 35815230 35818979 2392515 2396264 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 35819223 35823965 2396322 2401259 NC_000014.9 scf7180000172813 97.03 True fake: scaffold gap size wrong estimation (local) 35825530 35828248 2402677 2405395 NC_000014.9 scf7180000172813 99.96 True relocation, scaffold gap is present, inconsistency = 55268597 91097816 91099327 2407877 2406366 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 91096339 91097677 2409355 2408017 NC_000014.9 scf7180000172813 98.28 True local misassembly 91094826 91096192 2410722 2409356 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 91093080 91094239 2412435 2411276 NC_000014.9 scf7180000172813 98.19 True local misassembly 91091491 91092865 2413810 2412436 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91087827 91091402 2417469 2413894 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91085827 91086878 2419474 2418423 NC_000014.9 scf7180000172813 100.0 True relocation, scaffold gap is present, inconsistency = 40824927 50259785 50260835 2419539 2420589 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 50261055 50261727 2421386 2422058 NC_000014.9 scf7180000172813 96.43 True fake: scaffold gap size wrong estimation (local) 50261728 50262278 2422450 2423000 NC_000014.9 scf7180000172813 100.0 True indel: indel (> 5bp) 50262341 50263784 2423001 2424444 NC_000014.9 scf7180000172813 96.19 True relocation, scaffold gap is present, inconsistency = 40817898 91081737 91083309 2426072 2424499 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 91079478 91080497 2428721 2427702 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91076115 91077406 2432425 2431134 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 91074325 91074843 2434297 2433779 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 91073574 91074099 2434919 2434394 NC_000014.9 scf7180000172813 99.24 True fake: scaffold gap size wrong estimation (local) 91069891 91071144 2438606 2437353 NC_000014.9 scf7180000172813 98.33 True fake: scaffold gap size wrong estimation (local) 91068591 91069319 2439613 2438885 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91068080 91068590 2440608 2440098 NC_000014.9 scf7180000172813 99.8 True indel: indel (<= 5bp) 91067082 91068079 2441610 2440613 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91064623 91066125 2443915 2442413 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91062663 91064439 2445966 2444190 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 91057059 91062339 2451626 2446297 NC_000014.9 scf7180000172813 96.95 True fake: scaffold gap size wrong estimation (local) 91053114 91056875 2455627 2451841 NC_000014.9 scf7180000172813 99.71 True fake: scaffold gap size wrong estimation (local) 91051733 91052249 2456870 2456354 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91049572 91050356 2458896 2458112 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 91045328 91049400 2463120 2459107 NC_000014.9 scf7180000172813 97.9 True fake: scaffold gap size wrong estimation (local) 91040374 91044061 2468069 2464381 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 91028791 91040161 2479204 2468246 NC_000014.9 scf7180000172813 96.11 True fake: scaffold gap size wrong estimation (local) 91025299 91028326 2482789 2479615 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 91023546 91024939 2484279 2482890 NC_000014.9 scf7180000172813 99.35 True fake: scaffold gap size wrong estimation (local) 91021819 91022922 2485973 2484870 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 91004974 91021663 2502712 2486079 NC_000014.9 scf7180000172813 99.26 True fake: scaffold gap size wrong estimation (local) 90997997 91004126 2509595 2503491 NC_000014.9 scf7180000172813 99.51 True fake: scaffold gap size wrong estimation (local) 90994838 90997807 2512744 2509775 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 90993423 90994575 2514038 2512886 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 90991702 90993184 2515774 2514292 NC_000014.9 scf7180000172813 99.73 True fake: scaffold gap size wrong estimation (local) 90990798 90991504 2516507 2515801 NC_000014.9 scf7180000172813 99.58 True fake: scaffold gap size wrong estimation (local) 90983848 90990634 2523687 2516933 NC_000014.9 scf7180000172813 99.17 True fake: scaffold gap size wrong estimation (local) 90973961 90983557 2533379 2524163 NC_000014.9 scf7180000172813 95.66 True fake: scaffold gap size wrong estimation (local) 90965126 90973835 2542212 2533572 NC_000014.9 scf7180000172813 99.08 True fake: scaffold gap size wrong estimation (local) 90962594 90964895 2544685 2542384 NC_000014.9 scf7180000172813 100.0 True local misassembly 90961684 90962309 2545311 2544686 NC_000014.9 scf7180000172813 99.68 True local misassembly 90962667 90964661 2547326 2545332 NC_000014.9 scf7180000172813 100.0 True local misassembly 90953917 90961809 2555239 2547327 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 90951406 90953733 2557673 2555346 NC_000014.9 scf7180000172813 99.66 True fake: scaffold gap size wrong estimation (local) 90948674 90950891 2560397 2558181 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 90945220 90948443 2563868 2560646 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 90939386 90944596 2569688 2564422 NC_000014.9 scf7180000172813 99.62 True fake: scaffold gap size wrong estimation (local) 90915635 90938767 2593389 2570264 NC_000014.9 scf7180000172813 99.64 True fake: scaffold gap size wrong estimation (local) 90913133 90914565 2595847 2594451 NC_000014.9 scf7180000172813 97.31 True fake: scaffold gap size wrong estimation (local) 90910908 90912908 2598076 2596076 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 90904134 90910791 2604822 2598223 NC_000014.9 scf7180000172813 98.96 True fake: scaffold gap size wrong estimation (local) 90902341 90903964 2607148 2605525 NC_000014.9 scf7180000172813 100.0 True local misassembly 90901176 90902035 2608008 2607149 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 90899304 90901175 2610013 2608142 NC_000014.9 scf7180000172813 99.84 True indel: indel (<= 5bp) 90896947 90899302 2612369 2610014 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 90887965 90896813 2621204 2612634 NC_000014.9 scf7180000172813 96.61 True fake: scaffold gap size wrong estimation (local) 90885773 90887776 2623517 2621514 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 90883030 90885257 2626281 2624015 NC_000014.9 scf7180000172813 99.07 True fake: scaffold gap size wrong estimation (local) 90876008 90882900 2633286 2626422 NC_000014.9 scf7180000172813 99.35 True fake: scaffold gap size wrong estimation (local) 90864338 90875567 2645659 2634211 NC_000014.9 scf7180000172813 98.27 True fake: scaffold gap size wrong estimation (local) 90861756 90863056 2647331 2645974 NC_000014.9 scf7180000172813 97.23 True fake: scaffold gap size wrong estimation (local) 90856607 90860303 2652742 2649046 NC_000014.9 scf7180000172813 99.95 True relocation, scaffold gap is present, inconsistency = 67782425 23064899 23073423 2661990 2653501 NC_000014.9 scf7180000172813 99.58 True fake: scaffold gap size wrong estimation (local) 23061985 23064646 2664990 2662329 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23060006 23061698 2667010 2665247 NC_000014.9 scf7180000172813 98.72 True fake: scaffold gap size wrong estimation (local) 23046744 23059665 2680528 2667609 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 23041350 23046511 2685855 2680694 NC_000014.9 scf7180000172813 99.92 True relocation, scaffold gap is present, inconsistency = 41296326 64342888 64344641 2685906 2687659 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 64344861 64348175 2687895 2691181 NC_000014.9 scf7180000172813 97.79 True fake: scaffold gap size wrong estimation (local) 64348261 64351296 2691278 2694332 NC_000014.9 scf7180000172813 99.63 True fake: scaffold gap size wrong estimation (local) 64351750 64352525 2695137 2695912 NC_000014.9 scf7180000172813 99.61 True fake: scaffold gap size wrong estimation (local) 64354385 64355731 2699165 2700511 NC_000014.9 scf7180000172813 98.37 True fake: scaffold gap size wrong estimation (local) 64356265 64358743 2701218 2703695 NC_000014.9 scf7180000172813 99.88 True relocation, inconsistency = 10947295 75306039 75306677 2704334 2703696 NC_000014.9 scf7180000172813 100.0 True relocation, scaffold gap is present, inconsistency = 33232875 42072477 42073113 2705021 2704385 NC_000014.9 scf7180000172813 100.0 True relocation, scaffold gap is present, inconsistency = 19031487 23038552 23039970 2707459 2706041 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23036584 23037376 2709618 2708826 NC_000014.9 scf7180000172813 99.87 True fake: not a misassembly (possible transposable element) 64360890 64362510 2710162 2711782 NC_000014.9 scf7180000172813 99.94 True fake: not a misassembly (possible transposable element) 23033109 23036165 2715059 2712003 NC_000014.9 scf7180000172813 99.97 True relocation, scaffold gap is present, inconsistency = 41330909 64367125 64368466 2715110 2716452 NC_000014.9 scf7180000172813 99.85 True local misassembly 64363148 64363695 2716503 2717050 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 64368620 64369849 2717136 2718369 NC_000014.9 scf7180000172813 99.68 True local misassembly 64363674 64364333 2718519 2719178 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 64370250 64370854 2719662 2720266 NC_000014.9 scf7180000172813 100.0 True local misassembly 64364536 64365827 2720349 2721640 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 23030729 23031836 2723315 2722208 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 64371893 64373135 2723889 2725131 NC_000014.9 scf7180000172813 99.76 True relocation, scaffold gap is present, inconsistency = 41342209 23028124 23029633 2726691 2725182 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23027405 23027971 2727377 2726811 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 64375682 64376256 2728088 2728662 NC_000014.9 scf7180000172813 99.83 True fake: not a misassembly (possible transposable element) 23020109 23026630 2735366 2728715 NC_000014.9 scf7180000172813 98.4 True fake: scaffold gap size wrong estimation (local) 23017022 23018636 2738395 2736781 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 23015327 23016356 2740157 2739128 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23014436 23015045 2741184 2740575 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23012638 23013985 2743133 2741786 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 23008015 23011322 2747622 2744286 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 23004900 23007934 2750849 2747815 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 23002278 23003862 2753390 2751793 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 22995689 23001549 2759901 2754086 NC_000014.9 scf7180000172813 99.06 True fake: scaffold gap size wrong estimation (local) 22993153 22994258 2762426 2761321 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22988382 22990495 2767102 2764934 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 22983986 22988149 2771461 2767298 NC_000014.9 scf7180000172813 99.98 True fake: scaffold gap size wrong estimation (local) 22971119 22983805 2783974 2771592 NC_000014.9 scf7180000172813 97.56 True fake: scaffold gap size wrong estimation (local) 22968851 22969825 2786247 2785273 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22966256 22967625 2788895 2787526 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22963903 22964887 2791623 2790639 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 49716748 49717770 2792716 2791694 NC_000014.9 scf7180000172813 99.9 True fake: not a misassembly (possible transposable element) 22961540 22963818 2795331 2793053 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22960652 22961297 2796695 2796050 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22959038 22960378 2798714 2797374 NC_000014.9 scf7180000172813 100.0 True relocation, scaffold gap is present, inconsistency = -26754118 49708212 49711007 2803658 2800863 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 49705864 49707296 2805974 2804542 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22954985 22957489 2808529 2806025 NC_000014.9 scf7180000172813 99.92 True fake: not a misassembly (possible transposable element) 49703492 49704387 2809475 2808580 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 49702100 49703466 2811481 2810102 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 49700271 49700828 2813648 2813091 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 49699168 49700051 2814780 2813897 NC_000014.9 scf7180000172813 99.89 True fake: not a misassembly (possible transposable element) 22952245 22953187 2815773 2814831 NC_000014.9 scf7180000172813 99.89 True fake: not a misassembly (possible transposable element) 49697142 49698248 2817608 2816502 NC_000014.9 scf7180000172813 99.91 True relocation, scaffold gap is present, inconsistency = 26746057 22950125 22951034 2818568 2817659 NC_000014.9 scf7180000172813 97.69 True fake: scaffold gap size wrong estimation (local) 22947009 22948441 2822103 2820671 NC_000014.9 scf7180000172813 96.44 True local misassembly 22945775 22946799 2823128 2822104 NC_000014.9 scf7180000172813 99.71 True fake: scaffold gap size wrong estimation (local) 22944050 22944598 2825199 2824651 NC_000014.9 scf7180000172813 99.83 True fake: not a misassembly (possible transposable element) 97247273 97250131 2828058 2825200 NC_000014.9 scf7180000172813 99.97 True fake: not a misassembly (possible transposable element) 22942276 22942935 2828800 2828141 NC_000014.9 scf7180000172813 99.39 True fake: scaffold gap size wrong estimation (local) 22934948 22935627 2836874 2836195 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22932151 22934469 2839586 2837366 NC_000014.9 scf7180000172813 95.65 True fake: scaffold gap size wrong estimation (local) 22927815 22930951 2843925 2840796 NC_000014.9 scf7180000172813 99.62 True fake: scaffold gap size wrong estimation (local) 22925614 22927724 2846294 2844166 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 22921900 22925207 2850065 2846763 NC_000014.9 scf7180000172813 98.91 True fake: scaffold gap size wrong estimation (local) 22918277 22921628 2853633 2850280 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 22917077 22917598 2854776 2854255 NC_000014.9 scf7180000172813 97.51 True indel: indel (> 5bp) 22916289 22917076 2855571 2854784 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22913443 22914025 2858676 2858094 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22911805 22912737 2860429 2859497 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 22910962 22911692 2861232 2860502 NC_000014.9 scf7180000172813 97.26 True fake: scaffold gap size wrong estimation (local) 22908076 22908954 2864031 2863153 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22907300 22907993 2864869 2864176 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 22902957 22906783 2869146 2865300 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 22895281 22902756 2876851 2869362 NC_000014.9 scf7180000172813 99.61 True fake: scaffold gap size wrong estimation (local) 22892036 22894922 2879979 2877104 NC_000014.9 scf7180000172813 99.38 True fake: scaffold gap size wrong estimation (local) 22889614 22890999 2882342 2880957 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 22880966 22888841 2891095 2883182 NC_000014.9 scf7180000172813 99.94 True fake: not a misassembly (possible transposable element) 54978543 54979247 2891153 2891857 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22874741 22880766 2898696 2892731 NC_000014.9 scf7180000172813 98.93 True fake: scaffold gap size wrong estimation (local) 22870487 22874659 2903021 2898852 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 22868214 22869009 2905713 2904918 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 22864717 22867998 2910353 2906995 NC_000014.9 scf7180000172813 99.69 True fake: scaffold gap size wrong estimation (local) 22863427 22864062 2911462 2910827 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22861379 22862670 2913449 2912158 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22858053 22858854 2917078 2916277 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22856866 22857594 2918559 2917831 NC_000014.9 scf7180000172813 97.26 True local misassembly 22855564 22856654 2919650 2918560 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22854981 22855563 2920342 2919760 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22850528 22854561 2924700 2920706 NC_000014.9 scf7180000172813 97.98 True indel: indel (<= 5bp) 22834843 22850372 2940615 2924855 NC_000014.9 scf7180000172813 98.57 True fake: scaffold gap size wrong estimation (local) 22833120 22834575 2942668 2941196 NC_000014.9 scf7180000172813 99.38 True fake: scaffold gap size wrong estimation (local) 22831116 22831946 2944936 2944106 NC_000014.9 scf7180000172813 97.71 True fake: scaffold gap size wrong estimation (local) 22829801 22831115 2946415 2945101 NC_000014.9 scf7180000172813 99.7 True indel: indel (<= 5bp) 22829180 22829800 2947037 2946417 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22827921 22828992 2948360 2947289 NC_000014.9 scf7180000172813 97.85 True fake: scaffold gap size wrong estimation (local) 22825618 22826897 2950747 2949470 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 22824702 22825393 2951574 2950883 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22820760 22823873 2955524 2952411 NC_000014.9 scf7180000172813 99.97 True fake: not a misassembly (possible transposable element) 21452941 21453964 2956596 2955573 NC_000014.9 scf7180000172813 99.8 True fake: not a misassembly (possible transposable element) 22819411 22820617 2957944 2956738 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22818837 22819410 2958540 2957967 NC_000014.9 scf7180000172813 95.99 True local misassembly 22817611 22818579 2959509 2958541 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 22816499 22817133 2960929 2960295 NC_000014.9 scf7180000172813 96.54 True local misassembly 22814459 22816245 2962716 2960930 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 22812388 22813796 2964706 2963279 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 22810911 22811719 2965664 2964856 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22808159 22809346 2968692 2967505 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 22807170 22807974 2969634 2968830 NC_000014.9 scf7180000172813 99.63 True fake: scaffold gap size wrong estimation (local) 22806324 22806907 2970663 2970080 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22805115 22805894 2971613 2970834 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 22804273 22805010 2972518 2971732 NC_000014.9 scf7180000172813 99.72 True fake: scaffold gap size wrong estimation (local) 22803381 22804162 2973418 2972637 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 22802330 22803213 2974430 2973539 NC_000014.9 scf7180000172813 99.31 True fake: scaffold gap size wrong estimation (local) 22800833 22801525 2975875 2975183 NC_000014.9 scf7180000172813 99.57 True fake: scaffold gap size wrong estimation (local) 22795743 22800671 2980961 2976057 NC_000014.9 scf7180000172813 98.97 True fake: scaffold gap size wrong estimation (local) 22793126 22795087 2983537 2981576 NC_000014.9 scf7180000172813 99.64 True fake: scaffold gap size wrong estimation (local) 22792085 22792708 2985174 2984551 NC_000014.9 scf7180000172813 96.47 True local misassembly 22790931 22791838 2986082 2985175 NC_000014.9 scf7180000172813 99.56 True fake: scaffold gap size wrong estimation (local) 22788652 22789364 2988296 2987584 NC_000014.9 scf7180000172813 96.91 True fake: scaffold gap size wrong estimation (local) 22786706 22787322 2990402 2989786 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22783620 22784365 2993867 2993122 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22779612 22782205 2997824 2995232 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 22777914 22779480 2999552 2997986 NC_000014.9 scf7180000172813 98.53 True fake: scaffold gap size wrong estimation (local) 22772502 22776762 3004948 3000684 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 22765991 22772262 3011408 3005120 NC_000014.9 scf7180000172813 99.76 True fake: scaffold gap size wrong estimation (local) 22764105 22765342 3013161 3011924 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 22761736 22763789 3015518 3013467 NC_000014.9 scf7180000172813 99.56 True fake: scaffold gap size wrong estimation (local) 22760297 22761604 3017045 3015738 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 22758572 22760033 3018654 3017153 NC_000014.9 scf7180000172813 99.72 True fake: scaffold gap size wrong estimation (local) 22755082 22756042 3022013 3021053 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22752377 22754154 3024765 3022988 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 22750350 22751610 3026836 3025576 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 22746562 22750119 3030599 3027020 NC_000014.9 scf7180000172813 99.78 True fake: scaffold gap size wrong estimation (local) 22743671 22744698 3033182 3032155 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22741920 22743398 3035576 3034126 NC_000014.9 scf7180000172813 98.04 True fake: scaffold gap size wrong estimation (local) 22738215 22740921 3038964 3036320 NC_000014.9 scf7180000172813 95.73 True fake: scaffold gap size wrong estimation (local) 22734938 22736225 3042039 3040752 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22733595 22734786 3043760 3042461 NC_000014.9 scf7180000172813 99.73 True fake: scaffold gap size wrong estimation (local) 22729975 22733185 3047178 3043838 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 22725455 22727767 3051592 3049280 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 22723268 22724867 3053917 3052318 NC_000014.9 scf7180000172813 98.75 True fake: scaffold gap size wrong estimation (local) 22720895 22721783 3056393 3055505 NC_000014.9 scf7180000172813 99.78 True fake: scaffold gap size wrong estimation (local) 22713492 22720742 3063734 3056482 NC_000014.9 scf7180000172813 99.7 True fake: scaffold gap size wrong estimation (local) 22710757 22713359 3066375 3063844 NC_000014.9 scf7180000172813 96.86 True local misassembly 22709054 22710675 3068963 3067342 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 22705001 22707268 3073040 3070773 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 22699939 22705000 3078132 3073071 NC_000014.9 scf7180000172813 99.7 True fake: scaffold gap size wrong estimation (local) 22693877 22699768 3084164 3078229 NC_000014.9 scf7180000172813 95.6 True fake: scaffold gap size wrong estimation (local) 22688984 22693655 3088932 3084247 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 22686194 22687131 3090913 3089976 NC_000014.9 scf7180000172813 100.0 True local misassembly 22687097 22687808 3091678 3090967 NC_000014.9 scf7180000172813 98.17 True fake: scaffold gap size wrong estimation (local) 22684346 22685858 3093899 3092387 NC_000014.9 scf7180000172813 98.68 True inversion, scaffold gap is present 22676654 22677380 3100343 3101069 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22678362 22679829 3102222 3103689 NC_000014.9 scf7180000172813 100.0 True inversion, scaffold gap is present 22674001 22674877 3105876 3105002 NC_000014.9 scf7180000172813 98.4 True fake: scaffold gap size wrong estimation (local) 22658645 22672302 3120803 3107286 NC_000014.9 scf7180000172813 98.61 True fake: scaffold gap size wrong estimation (local) 22652294 22658529 3127273 3121038 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 22648048 22652115 3131492 3127425 NC_000014.9 scf7180000172813 99.36 True fake: scaffold gap size wrong estimation (local) 22643729 22647378 3135310 3131661 NC_000014.9 scf7180000172813 99.42 True fake: scaffold gap size wrong estimation (local) 22641569 22642316 3138028 3137283 NC_000014.9 scf7180000172813 99.6 True fake: scaffold gap size wrong estimation (local) 22632498 22636237 3142842 3139103 NC_000014.9 scf7180000172813 99.41 True fake: scaffold gap size wrong estimation (local) 22631438 22632391 3143924 3142973 NC_000014.9 scf7180000172813 98.01 True fake: not a misassembly (possible transposable element) 21899458 21903577 3144012 3148131 NC_000014.9 scf7180000172813 99.51 True fake: not a misassembly (possible transposable element) 22625893 22631555 3153730 3148234 NC_000014.9 scf7180000172813 96.87 True fake: scaffold gap size wrong estimation (local) 22621371 22624900 3158343 3154708 NC_000014.9 scf7180000172813 98.14 True fake: scaffold gap size wrong estimation (local) 22609270 22614766 3172024 3166508 NC_000014.9 scf7180000172813 99.69 True fake: scaffold gap size wrong estimation (local) 22604521 22609075 3176833 3172261 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 22590808 22604260 3190471 3177037 NC_000014.9 scf7180000172813 99.69 True fake: scaffold gap size wrong estimation (local) 22588009 22590195 3193252 3191066 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 22582465 22587756 3198703 3193535 NC_000014.9 scf7180000172813 97.16 True fake: scaffold gap size wrong estimation (local) 22578506 22579857 3200076 3198725 NC_000014.9 scf7180000172813 99.7 True local misassembly 22580029 22581536 3201629 3200122 NC_000014.9 scf7180000172813 99.87 True fake: scaffold gap size wrong estimation (local) 22575764 22577239 3203141 3201666 NC_000014.9 scf7180000172813 99.86 True local misassembly 22577282 22577993 3203873 3203162 NC_000014.9 scf7180000172813 99.72 True fake: scaffold gap size wrong estimation (local) 22573736 22575657 3206002 3204081 NC_000014.9 scf7180000172813 99.79 True fake: scaffold gap size wrong estimation (local) 22571883 22573549 3207755 3206089 NC_000014.9 scf7180000172813 99.64 True fake: scaffold gap size wrong estimation (local) 22568959 22571010 3210700 3208650 NC_000014.9 scf7180000172813 99.81 True fake: scaffold gap size wrong estimation (local) 22566555 22568780 3213259 3211034 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 22563516 22566437 3216402 3213481 NC_000014.9 scf7180000172813 99.66 True fake: scaffold gap size wrong estimation (local) 22559984 22563330 3219844 3216527 NC_000014.9 scf7180000172813 98.77 True fake: scaffold gap size wrong estimation (local) 22553277 22559825 3226339 3220009 NC_000014.9 scf7180000172813 96.34 True fake: scaffold gap size wrong estimation (local) 22548923 22553187 3230686 3226476 NC_000014.9 scf7180000172813 98.63 True fake: scaffold gap size wrong estimation (local) 22528081 22548654 3251506 3230941 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 22519423 22527801 3260137 3251761 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 22514656 22519234 3264922 3260335 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 22508006 22514360 3271501 3265137 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 22504867 22507897 3274669 3271650 NC_000014.9 scf7180000172813 97.88 True fake: scaffold gap size wrong estimation (local) 22491508 22504425 3287938 3275061 NC_000014.9 scf7180000172813 99.58 True fake: scaffold gap size wrong estimation (local) 22468476 22491309 3310905 3288078 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 22462615 22468246 3316682 3311051 NC_000014.9 scf7180000172813 99.96 True fake: scaffold gap size wrong estimation (local) 22447186 22462346 3332040 3316867 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 22444369 22446961 3334832 3332240 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 22430798 22444271 3348419 3334917 NC_000014.9 scf7180000172813 99.8 True fake: scaffold gap size wrong estimation (local) 22423251 22430619 3355958 3348579 NC_000014.9 scf7180000172813 99.89 True fake: scaffold gap size wrong estimation (local) 22367648 22423116 3411955 3356055 NC_000014.9 scf7180000172813 98.37 True fake: not a misassembly (possible transposable element) 24651190 24652122 3412908 3411976 NC_000014.9 scf7180000172813 99.36 True fake: not a misassembly (possible transposable element) 22366897 22367449 3414540 3413990 NC_000014.9 scf7180000172813 99.64 True fake: scaffold gap size wrong estimation (local) 22359083 22364933 3422536 3416553 NC_000014.9 scf7180000172813 98.02 True fake: scaffold gap size wrong estimation (local) 22354944 22358835 3426514 3422621 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 22349589 22350183 3435950 3435356 NC_000014.9 scf7180000172813 99.5 True fake: scaffold gap size wrong estimation (local) 22325626 22349306 3460073 3436382 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 22317534 22325364 3468112 3460282 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 22310948 22317341 3474578 3468186 NC_000014.9 scf7180000172813 99.91 True fake: scaffold gap size wrong estimation (local) 22308952 22310720 3476516 3474748 NC_000014.9 scf7180000172813 99.83 True relocation, scaffold gap is present, inconsistency = -79305497 101613809 101614398 3477156 3476567 NC_000014.9 scf7180000172813 100.0 True relocation, inconsistency = 79321984 22291291 22291824 3477690 3477157 NC_000014.9 scf7180000172813 99.82 True relocation, scaffold gap is present, inconsistency = -17553 22296015 22308783 3491091 3477751 NC_000014.9 scf7180000172813 95.78 True fake: scaffold gap size wrong estimation (local) 22292209 22295906 3494835 3491138 NC_000014.9 scf7180000172813 99.76 True fake: not a misassembly (possible transposable element) 28284680 28285326 3495482 3494836 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22260411 22292568 3527714 3495533 NC_000014.9 scf7180000172813 98.02 True fake: scaffold gap size wrong estimation (local) 22244876 22256481 3543371 3531867 NC_000014.9 scf7180000172813 98.61 True fake: scaffold gap size wrong estimation (local) 22244004 22244640 3544505 3543869 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22235405 22242433 3551430 3544526 NC_000014.9 scf7180000172813 98.0 True fake: scaffold gap size wrong estimation (local) 22225311 22235174 3561487 3551569 NC_000014.9 scf7180000172813 99.69 True fake: scaffold gap size wrong estimation (local) 22213019 22225199 3573622 3561508 NC_000014.9 scf7180000172813 98.33 True fake: scaffold gap size wrong estimation (local) 22198547 22212824 3588130 3573808 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 22184130 22198361 3602754 3588287 NC_000014.9 scf7180000172813 98.52 True fake: scaffold gap size wrong estimation (local) 22170732 22183816 3616105 3603021 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 22161976 22170587 3624760 3616194 NC_000014.9 scf7180000172813 99.26 True fake: scaffold gap size wrong estimation (local) 22129181 22161641 3657458 3624979 NC_000014.9 scf7180000172813 97.73 True fake: not a misassembly (possible transposable element) 43670031 43670790 3657480 3658239 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22122037 22129149 3665378 3658240 NC_000014.9 scf7180000172813 99.71 True fake: scaffold gap size wrong estimation (local) 22111067 22121782 3676198 3665562 NC_000014.9 scf7180000172813 99.02 True fake: scaffold gap size wrong estimation (local) 22109310 22110529 3677792 3676573 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22103285 22109084 3683712 3677933 NC_000014.9 scf7180000172813 99.53 True fake: scaffold gap size wrong estimation (local) 22092265 22103160 3694685 3683824 NC_000014.9 scf7180000172813 99.58 True fake: scaffold gap size wrong estimation (local) 22090158 22091247 3696680 3695591 NC_000014.9 scf7180000172813 100.0 True indel: indel (<= 5bp) 22088395 22090157 3698444 3696682 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 22087435 22088013 3699119 3698541 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 49927480 49928115 3699755 3699120 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22082347 22087450 3704783 3699814 NC_000014.9 scf7180000172813 96.58 True fake: scaffold gap size wrong estimation (local) 22063647 22082144 3723588 3705091 NC_000014.9 scf7180000172813 99.77 True fake: scaffold gap size wrong estimation (local) 22059458 22063407 3727763 3723814 NC_000014.9 scf7180000172813 99.44 True fake: not a misassembly (possible transposable element) 30113149 30113876 3728750 3728023 NC_000014.9 scf7180000172813 99.87 True fake: not a misassembly (possible transposable element) 22057577 22059211 3730430 3728751 NC_000014.9 scf7180000172813 98.25 True fake: scaffold gap size wrong estimation (local) 22042224 22057295 3745628 3730574 NC_000014.9 scf7180000172813 99.4 True fake: not a misassembly (possible transposable element) 66619815 66620323 3746157 3745649 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 22034738 22043774 3755202 3746158 NC_000014.9 scf7180000172813 99.85 True fake: scaffold gap size wrong estimation (local) 22033466 22034498 3756649 3755617 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 22025497 22032682 3764456 3757271 NC_000014.9 scf7180000172813 99.93 True fake: scaffold gap size wrong estimation (local) 22006731 22025322 3783250 3764629 NC_000014.9 scf7180000172813 99.83 True fake: scaffold gap size wrong estimation (local) 21972901 22005073 3817388 3784701 NC_000014.9 scf7180000172813 97.64 True fake: scaffold gap size wrong estimation (local) 21970609 21972349 3819703 3817961 NC_000014.9 scf7180000172813 99.65 True fake: scaffold gap size wrong estimation (local) 21966629 21968881 3823807 3821555 NC_000014.9 scf7180000172813 100.0 True relocation, inconsistency = -63765676 85729938 85732299 3826382 3823813 NC_000014.9 scf7180000172813 96.49 True fake: scaffold gap size wrong estimation (local) 85726788 85729711 3829326 3826403 NC_000014.9 scf7180000172813 99.62 True fake: scaffold gap size wrong estimation (local) 85719155 85726492 3836854 3829517 NC_000014.9 scf7180000172813 99.92 True fake: scaffold gap size wrong estimation (local) 85698030 85718416 3857785 3837450 NC_000014.9 scf7180000172813 99.38 True fake: scaffold gap size wrong estimation (local) 85692885 85697771 3862856 3857972 NC_000014.9 scf7180000172813 99.9 True fake: scaffold gap size wrong estimation (local) 85689789 85692609 3866169 3863113 NC_000014.9 scf7180000172813 99.54 True fake: scaffold gap size wrong estimation (local) 85684050 85689451 3871681 3866247 NC_000014.9 scf7180000172813 99.57 True fake: scaffold gap size wrong estimation (local) 85681799 85683800 3873879 3871877 NC_000014.9 scf7180000172813 99.7 True fake: scaffold gap size wrong estimation (local) 85677044 85681598 3878526 3874094 NC_000014.9 scf7180000172813 96.28 True fake: scaffold gap size wrong estimation (local) 85672275 85676759 3883229 3878745 NC_000014.9 scf7180000172813 99.82 True fake: scaffold gap size wrong estimation (local) 85657036 85672149 3898411 3883370 NC_000014.9 scf7180000172813 98.64 True fake: scaffold gap size wrong estimation (local) 85643539 85656825 3911759 3898458 NC_000014.9 scf7180000172813 99.58 True fake: scaffold gap size wrong estimation (local) 85640119 85643313 3915125 3911911 NC_000014.9 scf7180000172813 99.84 True fake: scaffold gap size wrong estimation (local) 85632482 85639854 3922725 3915363 NC_000014.9 scf7180000172813 98.96 True fake: scaffold gap size wrong estimation (local) 85599237 85632293 3955745 3922904 NC_000014.9 scf7180000172813 99.02 True fake: scaffold gap size wrong estimation (local) 85595165 85598935 3959782 3956012 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 85593986 85595164 3961378 3960200 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 85590789 85593876 3964752 3961795 NC_000014.9 scf7180000172813 95.63 True fake: scaffold gap size wrong estimation (local) 85563053 85590690 3992506 3964861 NC_000014.9 scf7180000172813 97.52 True fake: scaffold gap size wrong estimation (local) 85560536 85562621 3994839 3992754 NC_000014.9 scf7180000172813 99.86 True fake: scaffold gap size wrong estimation (local) 85557709 85560364 3997666 3995011 NC_000014.9 scf7180000172813 99.74 True fake: scaffold gap size wrong estimation (local) 85555712 85557558 3999623 3997777 NC_000014.9 scf7180000172813 99.95 True fake: scaffold gap size wrong estimation (local) 85547565 85555410 4007725 3999884 NC_000014.9 scf7180000172813 99.75 True fake: scaffold gap size wrong estimation (local) 85526480 85547431 4028613 4007806 NC_000014.9 scf7180000172813 99.2 True fake: scaffold gap size wrong estimation (local) 85518962 85526451 4036232 4028743 NC_000014.9 scf7180000172813 99.85 True fake: not a misassembly (possible transposable element) 72727464 72728121 4036503 4037160 NC_000014.9 scf7180000172813 100.0 True fake: not a misassembly (possible transposable element) 85504029 85518790 4052090 4037181 NC_000014.9 scf7180000172813 97.49 True fake: scaffold gap size wrong estimation (local) 85495000 85503799 4061096 4052324 NC_000014.9 scf7180000172813 99.66 True fake: scaffold gap size wrong estimation (local) 85492070 85492707 4061825 4061188 NC_000014.9 scf7180000172813 100.0 True local misassembly 85492783 85494562 4063890 4062112 NC_000014.9 scf7180000172813 99.94 True fake: scaffold gap size wrong estimation (local) 85491798 85492624 4064858 4064032 NC_000014.9 scf7180000172813 99.88 True fake: scaffold gap size wrong estimation (local) 85488180 85491626 4068439 4065008 NC_000014.9 scf7180000172813 99.56 True fake: scaffold gap size wrong estimation (local) 85476335 85487656 4080187 4068948 NC_000014.9 scf7180000172813 99.18 True fake: scaffold gap size wrong estimation (local) 85472921 85476183 4083552 4080280 NC_000014.9 scf7180000172813 99.85 True indel: stretch of mismatches 85470930 85472832 4085561 4083641 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 85453433 85470810 4103168 4085644 NC_000014.9 scf7180000172813 98.85 True fake: scaffold gap size wrong estimation (local) 85450293 85453261 4106277 4103309 NC_000014.9 scf7180000172813 100.0 True fake: scaffold gap size wrong estimation (local) 85446197 85450025 4110276 4106448 NC_000014.9 scf7180000172813 99.97 True fake: scaffold gap size wrong estimation (local) 85442891 85446044 4113516 4110363 NC_000014.9 scf7180000172813 99.9 True CONTIG scf7180000172813 4116482 misassembled CONTIG scf7180000172814 429 unaligned 24474280 24479609 5333 1 NC_000014.9 scf7180000172815 99.06 True fake: scaffold gap size wrong estimation (local) 24471177 24473609 8937 6504 NC_000014.9 scf7180000172815 98.56 True relocation, scaffold gap is present, inconsistency = -6702694 31169010 31172569 13732 10239 NC_000014.9 scf7180000172815 98.14 True fake: scaffold gap size wrong estimation (local) 31166110 31168790 16626 13946 NC_000014.9 scf7180000172815 99.78 True fake: scaffold gap size wrong estimation (local) 31165001 31165982 17693 16712 NC_000014.9 scf7180000172815 99.9 True indel: indel (<= 5bp) 31163088 31164999 19605 17694 NC_000014.9 scf7180000172815 99.79 True indel: indel (> 5bp) 31162240 31163060 20463 19643 NC_000014.9 scf7180000172815 99.63 True fake: scaffold gap size wrong estimation (local) 31161669 31162239 21079 20509 NC_000014.9 scf7180000172815 98.6 True fake: scaffold gap size wrong estimation (local) 31159681 31160920 22994 21755 NC_000014.9 scf7180000172815 99.92 True local misassembly 31158794 31159379 23580 22995 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31156404 31158266 26129 24269 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 31155336 31156043 27040 26333 NC_000014.9 scf7180000172815 98.73 True fake: scaffold gap size wrong estimation (local) 31154551 31155194 28218 27575 NC_000014.9 scf7180000172815 96.74 True fake: scaffold gap size wrong estimation (local) 31153315 31154135 29192 28372 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31147214 31152892 35402 29754 NC_000014.9 scf7180000172815 97.5 True fake: scaffold gap size wrong estimation (local) 31139469 31147114 43174 35544 NC_000014.9 scf7180000172815 99.63 True fake: not a misassembly (possible transposable element) 92804918 92806353 43195 44630 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 31137298 31139569 46924 44659 NC_000014.9 scf7180000172815 99.69 True fake: scaffold gap size wrong estimation (local) 31135999 31136837 48382 47544 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31127618 31135808 56644 48528 NC_000014.9 scf7180000172815 99.03 True fake: scaffold gap size wrong estimation (local) 31125183 31127020 59093 57256 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 31118280 31124836 65830 59375 NC_000014.9 scf7180000172815 97.25 True fake: scaffold gap size wrong estimation (local) 31117340 31118052 66780 66068 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31112796 31116657 71292 67431 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 31111517 31112671 72608 71424 NC_000014.9 scf7180000172815 98.37 True fake: scaffold gap size wrong estimation (local) 31110170 31110704 74056 73522 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31105278 31110031 78887 74117 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 31103456 31104919 80682 79176 NC_000014.9 scf7180000172815 99.57 True fake: scaffold gap size wrong estimation (local) 31102710 31103283 81339 80766 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31094988 31102442 88992 81567 NC_000014.9 scf7180000172815 99.0 True fake: scaffold gap size wrong estimation (local) 31090259 31094794 93656 89188 NC_000014.9 scf7180000172815 98.49 True fake: scaffold gap size wrong estimation (local) 31089132 31090080 94930 93982 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 31086611 31088584 97170 95197 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 31083518 31086482 100279 97315 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31081964 31082640 101840 101164 NC_000014.9 scf7180000172815 100.0 True local misassembly 31082908 31083499 102452 101861 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31075996 31080989 109248 104259 NC_000014.9 scf7180000172815 99.43 True fake: scaffold gap size wrong estimation (local) 31074652 31075756 110621 109517 NC_000014.9 scf7180000172815 100.0 True relocation, scaffold gap is present, inconsistency = 15470414 46549545 46551239 113996 115690 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 46551468 46567808 115860 132196 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 46583965 46585679 151624 153338 NC_000014.9 scf7180000172815 99.53 True fake: scaffold gap size wrong estimation (local) 46586195 46594392 153874 161952 NC_000014.9 scf7180000172815 98.12 True fake: scaffold gap size wrong estimation (local) 46594635 46608872 162130 176280 NC_000014.9 scf7180000172815 99.22 True fake: scaffold gap size wrong estimation (local) 46610228 46611888 177552 179212 NC_000014.9 scf7180000172815 99.94 True local misassembly 46608764 46610225 179233 180698 NC_000014.9 scf7180000172815 99.59 True fake: scaffold gap size wrong estimation (local) 46610444 46615384 181080 186018 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 46615882 46620823 186379 191432 NC_000014.9 scf7180000172815 95.91 True relocation, scaffold gap is present, inconsistency = 58213734 104834608 104836072 192880 191483 NC_000014.9 scf7180000172815 95.16 True fake: scaffold gap size wrong estimation (local) 104832056 104832768 195396 194684 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 104826710 104828407 201025 199328 NC_000014.9 scf7180000172815 99.94 True relocation, scaffold gap is present, inconsistency = 31122455 73702403 73703467 202877 201813 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 73700340 73701944 205109 203505 NC_000014.9 scf7180000172815 98.63 True local misassembly 73699545 73700188 205753 205110 NC_000014.9 scf7180000172815 99.69 True fake: scaffold gap size wrong estimation (local) 73697765 73699336 207648 206089 NC_000014.9 scf7180000172815 98.9 True fake: scaffold gap size wrong estimation (local) 73695784 73697498 209657 207943 NC_000014.9 scf7180000172815 98.72 True local misassembly 73695069 73695619 210208 209658 NC_000014.9 scf7180000172815 100.0 True relocation, scaffold gap is present, inconsistency = 32737678 106435728 106443417 212639 220129 NC_000014.9 scf7180000172815 96.75 True fake: scaffold gap size wrong estimation (local) 106443728 106446224 220427 222923 NC_000014.9 scf7180000172815 99.04 True indel: indel (<= 5bp) 106446230 106447496 222924 224190 NC_000014.9 scf7180000172815 99.45 True indel: indel (<= 5bp) 106447538 106451493 224233 228188 NC_000014.9 scf7180000172815 99.92 True indel: indel (<= 5bp) 106451495 106452107 228189 228801 NC_000014.9 scf7180000172815 99.67 True indel: indel (<= 5bp) 106452112 106453070 228802 229760 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 106453584 106454712 230487 231615 NC_000014.9 scf7180000172815 95.57 True indel: indel (<= 5bp) 106454713 106456268 231618 233173 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 106456269 106457308 233374 234413 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 106457546 106462279 234606 239354 NC_000014.9 scf7180000172815 99.81 True relocation, scaffold gap is present, inconsistency = -80739405 25722940 25727612 239420 244092 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 25728609 25729578 245183 246152 NC_000014.9 scf7180000172815 99.69 True relocation, scaffold gap is present, inconsistency = 26418057 52148106 52148903 247404 246623 NC_000014.9 scf7180000172815 97.87 True fake: scaffold gap size wrong estimation (local) 52146652 52147162 249199 248689 NC_000014.9 scf7180000172815 99.8 True indel: indel (<= 5bp) 52146049 52146650 249801 249200 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 52145311 52146048 251445 250708 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 52142018 52145099 254829 251749 NC_000014.9 scf7180000172815 99.77 True fake: scaffold gap size wrong estimation (local) 52140524 52141794 256443 255150 NC_000014.9 scf7180000172815 99.45 True relocation, scaffold gap is present, inconsistency = 8765980 60907795 60908421 256464 257090 NC_000014.9 scf7180000172815 99.2 True relocation, scaffold gap is present, inconsistency = 4976449 65888600 65892893 265081 260820 NC_000014.9 scf7180000172815 99.11 True fake: scaffold gap size wrong estimation (local) 65876420 65888381 277114 265185 NC_000014.9 scf7180000172815 99.45 True fake: scaffold gap size wrong estimation (local) 65873874 65876006 279610 277478 NC_000014.9 scf7180000172815 99.58 True fake: scaffold gap size wrong estimation (local) 65862276 65873702 291191 279741 NC_000014.9 scf7180000172815 99.67 True fake: scaffold gap size wrong estimation (local) 65860068 65861752 293179 291495 NC_000014.9 scf7180000172815 99.94 True fake: not a misassembly (possible transposable element) 65861860 65862482 293222 293844 NC_000014.9 scf7180000172815 99.84 True fake: not a misassembly (possible transposable element) 65848238 65855007 303933 297362 NC_000014.9 scf7180000172815 96.92 True fake: not a misassembly (possible transposable element) 89731338 89731861 304508 303985 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 65812485 65848263 340189 304509 NC_000014.9 scf7180000172815 99.57 True fake: scaffold gap size wrong estimation (local) 65795423 65812350 357275 340361 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 65777337 65792902 379382 361955 NC_000014.9 scf7180000172815 97.95 True fake: scaffold gap size wrong estimation (local) 65775088 65777168 381566 379486 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65763170 65774737 393423 381822 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 65740691 65763026 415897 393531 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 65730609 65740583 425960 415986 NC_000014.9 scf7180000172815 99.75 True indel: indel (<= 5bp) 65729558 65730603 427006 425961 NC_000014.9 scf7180000172815 97.13 True fake: scaffold gap size wrong estimation (local) 65726931 65729053 429628 427506 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 65718977 65726930 437613 429660 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 65717691 65718976 439749 438464 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65702995 65715880 454132 441303 NC_000014.9 scf7180000172815 99.49 True fake: scaffold gap size wrong estimation (local) 65700680 65702231 456474 454883 NC_000014.9 scf7180000172815 98.6 True fake: scaffold gap size wrong estimation (local) 65694991 65700393 462119 456781 NC_000014.9 scf7180000172815 98.79 True fake: scaffold gap size wrong estimation (local) 65693406 65694689 463796 462504 NC_000014.9 scf7180000172815 99.45 True fake: scaffold gap size wrong estimation (local) 65689768 65691682 467226 465367 NC_000014.9 scf7180000172815 97.1 True fake: scaffold gap size wrong estimation (local) 65655477 65689585 501288 467456 NC_000014.9 scf7180000172815 99.11 True relocation, scaffold gap is present, inconsistency = -30350382 96005286 96005808 501861 501339 NC_000014.9 scf7180000172815 99.25 True relocation, inconsistency = 7285301 88719108 88719984 502738 501862 NC_000014.9 scf7180000172815 99.77 True relocation, scaffold gap is present, inconsistency = 23063794 65650318 65655259 507736 502793 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 65644635 65650129 513361 507867 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65643693 65644537 514299 513476 NC_000014.9 scf7180000172815 97.33 True fake: scaffold gap size wrong estimation (local) 65634274 65643402 523624 514564 NC_000014.9 scf7180000172815 99.16 True fake: scaffold gap size wrong estimation (local) 65624995 65632899 532826 524924 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 65621917 65624737 535839 533019 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65618064 65621318 539648 536394 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 65611927 65617754 545700 539878 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 65610657 65611209 546990 546438 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65609296 65610399 548246 547143 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65606274 65609064 551330 548596 NC_000014.9 scf7180000172815 97.83 True fake: scaffold gap size wrong estimation (local) 65598476 65606099 559121 551503 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 65597587 65598332 560125 559380 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65595838 65597391 561760 560207 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 65593958 65595603 563586 561941 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65589715 65593669 567859 563905 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 65587187 65589460 570389 568116 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65584402 65586937 573179 570644 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65558334 65584108 599069 573398 NC_000014.9 scf7180000172815 99.59 True fake: scaffold gap size wrong estimation (local) 65543055 65557549 614297 599838 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 65538830 65540591 616159 614398 NC_000014.9 scf7180000172815 99.94 True local misassembly 65538880 65542850 620150 616180 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65537639 65538732 621332 620239 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65535808 65536982 623207 622033 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 65534559 65535110 624560 624009 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 65528290 65534348 630679 624621 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 65527166 65527694 631613 631085 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65512912 65522638 647735 637639 NC_000014.9 scf7180000172815 96.72 True fake: scaffold gap size wrong estimation (local) 65508812 65512659 651806 647959 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 65505553 65508085 655103 652571 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65492404 65505319 668109 655413 NC_000014.9 scf7180000172815 98.15 True fake: not a misassembly (possible transposable element) 36747150 36749054 670014 668110 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 65487573 65492436 675042 670179 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65474537 65487455 688134 675134 NC_000014.9 scf7180000172815 99.73 True fake: scaffold gap size wrong estimation (local) 65472265 65474301 690503 688467 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 65468401 65472264 694807 690944 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 65458175 65467394 705009 695916 NC_000014.9 scf7180000172815 98.12 True fake: scaffold gap size wrong estimation (local) 65456864 65457959 706224 705129 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 65443526 65456631 719727 706502 NC_000014.9 scf7180000172815 98.03 True fake: scaffold gap size wrong estimation (local) 65442301 65443365 720925 719875 NC_000014.9 scf7180000172815 98.56 True fake: scaffold gap size wrong estimation (local) 65440126 65441619 723072 721579 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65436630 65439955 726622 723297 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65431313 65436412 731920 726804 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 65426339 65430991 736815 732152 NC_000014.9 scf7180000172815 99.78 True fake: scaffold gap size wrong estimation (local) 65423536 65425195 739609 737958 NC_000014.9 scf7180000172815 99.46 True fake: scaffold gap size wrong estimation (local) 65419228 65422795 743993 740404 NC_000014.9 scf7180000172815 97.6 True fake: scaffold gap size wrong estimation (local) 65404243 65418971 758565 744126 NC_000014.9 scf7180000172815 97.93 True fake: scaffold gap size wrong estimation (local) 65402601 65404069 760479 759011 NC_000014.9 scf7180000172815 98.43 True fake: scaffold gap size wrong estimation (local) 65399292 65401678 763742 761356 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 65395008 65398483 767969 764495 NC_000014.9 scf7180000172815 99.57 True fake: scaffold gap size wrong estimation (local) 65392204 65394078 770678 768804 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65390937 65391551 772056 771442 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65390132 65390727 773693 773099 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 65387050 65388558 777202 775694 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 65383359 65385793 780805 778399 NC_000014.9 scf7180000172815 95.81 True fake: scaffold gap size wrong estimation (local) 65379481 65383265 784610 780826 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 65376675 65378833 787414 785256 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65375884 65376562 788234 787556 NC_000014.9 scf7180000172815 97.05 True indel: indel (> 5bp) 65374762 65375834 789307 788235 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 65373212 65374688 790853 789377 NC_000014.9 scf7180000172815 99.8 True fake: scaffold gap size wrong estimation (local) 65372671 65373211 791726 791186 NC_000014.9 scf7180000172815 96.12 True local misassembly 65370445 65372473 793755 791727 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 65368912 65370219 795370 794063 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 65364465 65368054 799821 796190 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 65363426 65364212 800865 800079 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65361344 65362709 803079 801460 NC_000014.9 scf7180000172815 99.04 True fake: scaffold gap size wrong estimation (local) 65360055 65361104 804149 803100 NC_000014.9 scf7180000172815 95.43 True local misassembly 65357933 65359875 806092 804150 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 65356140 65357932 808335 806543 NC_000014.9 scf7180000172815 98.77 True indel: indel (> 5bp) 65354069 65356124 810391 808336 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 65352597 65353652 812031 810976 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65351086 65352361 813408 812179 NC_000014.9 scf7180000172815 95.4 True fake: scaffold gap size wrong estimation (local) 65346139 65350769 818696 813805 NC_000014.9 scf7180000172815 99.33 True fake: scaffold gap size wrong estimation (local) 65341865 65345890 822936 818747 NC_000014.9 scf7180000172815 95.51 True fake: not a misassembly (possible transposable element) 35673783 35675399 822995 824611 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 65339718 65340685 825794 824827 NC_000014.9 scf7180000172815 99.69 True relocation, scaffold gap is present, inconsistency = 29657625 35677091 35680653 827234 830780 NC_000014.9 scf7180000172815 99.52 True fake: not a misassembly (possible transposable element) 68953886 68954548 830879 831541 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 35675399 35676418 831542 832561 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 75271676 75273023 833909 832562 NC_000014.9 scf7180000172815 99.85 True fake: not a misassembly (possible transposable element) 35680862 35682336 833969 835443 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 35682532 35690834 835547 843822 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 35691078 35695150 844018 848090 NC_000014.9 scf7180000172815 100.0 True relocation, scaffold gap is present, inconsistency = 29626456 65323143 65324343 850827 849627 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 65320429 65322956 853637 851110 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 65317798 65320275 856313 853821 NC_000014.9 scf7180000172815 99.43 True fake: scaffold gap size wrong estimation (local) 65315545 65316632 858637 857550 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65313893 65315277 860218 858793 NC_000014.9 scf7180000172815 99.28 True fake: scaffold gap size wrong estimation (local) 65311524 65313543 862566 860547 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 65309580 65311417 864533 862696 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 65308107 65309321 865918 864704 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65304873 65305728 868917 868062 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65293568 65304648 880134 869210 NC_000014.9 scf7180000172815 97.34 True fake: scaffold gap size wrong estimation (local) 65290863 65292325 882838 881376 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65285874 65290554 887839 883159 NC_000014.9 scf7180000172815 100.0 True indel: indel (<= 5bp) 65284119 65285808 889598 887909 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 65281562 65283821 892128 889869 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65276313 65281287 897636 892414 NC_000014.9 scf7180000172815 95.55 True fake: scaffold gap size wrong estimation (local) 65275050 65276101 898814 897763 NC_000014.9 scf7180000172815 98.0 True local misassembly 65273819 65274932 899928 898815 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 65267529 65273485 906450 900606 NC_000014.9 scf7180000172815 98.0 True fake: scaffold gap size wrong estimation (local) 65265344 65266300 908721 907765 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 65264082 65264737 909995 909340 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 65262863 65264081 911250 910032 NC_000014.9 scf7180000172815 98.36 True fake: scaffold gap size wrong estimation (local) 65259791 65262707 914317 911401 NC_000014.9 scf7180000172815 99.42 True fake: scaffold gap size wrong estimation (local) 65258971 65259790 915599 914780 NC_000014.9 scf7180000172815 99.27 True fake: scaffold gap size wrong estimation (local) 65257105 65258048 917144 916201 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65254820 65257117 919570 917273 NC_000014.9 scf7180000172815 99.13 True fake: scaffold gap size wrong estimation (local) 65251093 65254383 923267 919977 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65247307 65250904 927234 923440 NC_000014.9 scf7180000172815 98.41 True fake: scaffold gap size wrong estimation (local) 65242039 65247196 932417 927329 NC_000014.9 scf7180000172815 98.54 True fake: scaffold gap size wrong estimation (local) 65241222 65241854 933133 932501 NC_000014.9 scf7180000172815 97.95 True fake: scaffold gap size wrong estimation (local) 65236327 65240491 938091 933913 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65232969 65235829 941384 938524 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 65228157 65232531 946050 941733 NC_000014.9 scf7180000172815 98.67 True fake: scaffold gap size wrong estimation (local) 65224526 65227914 949764 946376 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 65221323 65223903 952899 950320 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 65213612 65221190 960393 952981 NC_000014.9 scf7180000172815 97.62 True fake: scaffold gap size wrong estimation (local) 65208159 65211953 965862 961879 NC_000014.9 scf7180000172815 95.95 True local misassembly 65201939 65207649 971738 966040 NC_000014.9 scf7180000172815 99.77 True fake: scaffold gap size wrong estimation (local) 65191161 65201814 982277 971851 NC_000014.9 scf7180000172815 97.76 True fake: scaffold gap size wrong estimation (local) 65188365 65189103 984960 984222 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 65183577 65188101 989761 985206 NC_000014.9 scf7180000172815 99.67 True fake: scaffold gap size wrong estimation (local) 65181294 65183490 992026 989829 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 65179202 65181072 994175 992310 NC_000014.9 scf7180000172815 99.04 True relocation, scaffold gap is present, inconsistency = 10353336 75535330 75536470 995097 996237 NC_000014.9 scf7180000172815 99.91 True relocation, scaffold gap is present, inconsistency = -50992917 24543936 24551572 996620 1004256 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 24552406 24554674 1005154 1007422 NC_000014.9 scf7180000172815 99.69 True fake: scaffold gap size wrong estimation (local) 24554857 24556278 1007620 1009041 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24556370 24558978 1009125 1011733 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24559217 24568874 1011865 1021709 NC_000014.9 scf7180000172815 98.25 True fake: scaffold gap size wrong estimation (local) 24569130 24584037 1021873 1037452 NC_000014.9 scf7180000172815 95.64 True relocation, scaffold gap is present, inconsistency = 16315687 40899808 40901096 1037536 1038824 NC_000014.9 scf7180000172815 100.0 True local misassembly 40898153 40900871 1038845 1041563 NC_000014.9 scf7180000172815 99.71 True indel: indel (<= 5bp) 40901080 40907730 1041771 1048499 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 40907958 40921495 1048787 1062164 NC_000014.9 scf7180000172815 98.57 True fake: scaffold gap size wrong estimation (local) 40921705 40922951 1062373 1063680 NC_000014.9 scf7180000172815 99.28 True fake: scaffold gap size wrong estimation (local) 40923497 40927234 1063930 1067801 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 40929030 40932682 1069281 1072933 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 40932934 40934711 1073075 1074852 NC_000014.9 scf7180000172815 99.78 True fake: scaffold gap size wrong estimation (local) 40934787 40941206 1075075 1081442 NC_000014.9 scf7180000172815 98.87 True fake: scaffold gap size wrong estimation (local) 40941361 40947548 1081539 1087712 NC_000014.9 scf7180000172815 99.61 True fake: scaffold gap size wrong estimation (local) 40947695 40948905 1087963 1089173 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 40954855 40967058 1099209 1111809 NC_000014.9 scf7180000172815 96.59 True fake: scaffold gap size wrong estimation (local) 40967179 40991366 1111913 1136016 NC_000014.9 scf7180000172815 99.44 True fake: scaffold gap size wrong estimation (local) 40991716 40993055 1136379 1137718 NC_000014.9 scf7180000172815 99.7 True fake: scaffold gap size wrong estimation (local) 40993338 41001445 1137976 1146084 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 41001678 41005213 1146256 1149793 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 41005497 41015092 1150038 1159632 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 41015619 41049391 1159974 1193779 NC_000014.9 scf7180000172815 99.36 True fake: scaffold gap size wrong estimation (local) 41049618 41062383 1193932 1206715 NC_000014.9 scf7180000172815 99.29 True fake: scaffold gap size wrong estimation (local) 41062480 41096372 1206819 1240773 NC_000014.9 scf7180000172815 99.36 True fake: not a misassembly (possible transposable element) 98398334 98399149 1240809 1241623 NC_000014.9 scf7180000172815 99.39 True fake: not a misassembly (possible transposable element) 41095154 41097615 1241644 1244104 NC_000014.9 scf7180000172815 99.88 True relocation, inconsistency = 57303736 98401352 98403210 1244105 1245967 NC_000014.9 scf7180000172815 99.69 True local misassembly 98399300 98400472 1246000 1247172 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 98403911 98448983 1247231 1292774 NC_000014.9 scf7180000172815 98.58 True fake: scaffold gap size wrong estimation (local) 98449263 98450131 1293017 1293885 NC_000014.9 scf7180000172815 99.54 True indel: indel (> 5bp) 98450402 98464831 1294142 1308966 NC_000014.9 scf7180000172815 96.97 True fake: scaffold gap size wrong estimation (local) 98465447 98466037 1309461 1310051 NC_000014.9 scf7180000172815 99.66 True fake: scaffold gap size wrong estimation (local) 98466217 98475701 1310241 1319725 NC_000014.9 scf7180000172815 99.73 True fake: scaffold gap size wrong estimation (local) 98475873 98528320 1319843 1372229 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 98528548 98538544 1372389 1382415 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 98538780 98560837 1382576 1404641 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 98560956 98601050 1404730 1444677 NC_000014.9 scf7180000172815 99.4 True fake: scaffold gap size wrong estimation (local) 98601217 98645227 1444868 1489526 NC_000014.9 scf7180000172815 98.45 True fake: scaffold gap size wrong estimation (local) 98645394 98657001 1489621 1501293 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 98657171 98658904 1501431 1503164 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 98659042 98661313 1503341 1505612 NC_000014.9 scf7180000172815 99.78 True local misassembly 98661485 98662781 1505613 1506909 NC_000014.9 scf7180000172815 95.37 True fake: scaffold gap size wrong estimation (local) 98662782 98663460 1507208 1507886 NC_000014.9 scf7180000172815 100.0 True indel: indel (<= 5bp) 98663461 98665333 1507888 1509760 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 98665564 98678604 1509945 1523004 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 98678800 98691767 1523187 1536154 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 98691981 98702146 1536308 1546467 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 98702244 98707064 1546822 1551641 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 98707215 98711002 1551761 1555564 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 98711262 98714233 1555904 1558894 NC_000014.9 scf7180000172815 99.8 True fake: scaffold gap size wrong estimation (local) 98714495 98729673 1559129 1574330 NC_000014.9 scf7180000172815 99.8 True fake: scaffold gap size wrong estimation (local) 98729917 98740333 1574536 1584952 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 98740467 98744901 1585025 1589498 NC_000014.9 scf7180000172815 97.72 True fake: scaffold gap size wrong estimation (local) 98745481 98764900 1590078 1609507 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 98765141 98777551 1609679 1622105 NC_000014.9 scf7180000172815 99.98 True fake: scaffold gap size wrong estimation (local) 98777738 98813004 1622239 1657450 NC_000014.9 scf7180000172815 99.06 True fake: scaffold gap size wrong estimation (local) 98813042 98814910 1657611 1659479 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 98815112 98825213 1659676 1669777 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 98825482 98842948 1669990 1687456 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 98843110 98849764 1687595 1694272 NC_000014.9 scf7180000172815 99.91 True local misassembly 98849846 98857442 1694476 1702075 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 98857590 98871015 1702287 1715712 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 98871238 98880373 1715880 1725017 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 98880556 98882608 1725143 1727195 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 98882851 98896013 1727384 1740620 NC_000014.9 scf7180000172815 99.14 True fake: scaffold gap size wrong estimation (local) 98896250 98924894 1740782 1769325 NC_000014.9 scf7180000172815 99.33 True fake: scaffold gap size wrong estimation (local) 98925028 98927355 1769492 1771819 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 98927526 98948496 1771933 1792902 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 98948624 98969279 1793140 1813758 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 98969570 98979703 1814075 1824121 NC_000014.9 scf7180000172815 98.5 True fake: scaffold gap size wrong estimation (local) 98979858 98987049 1824208 1831451 NC_000014.9 scf7180000172815 97.01 True relocation, scaffold gap is present, inconsistency = 28675089 70303036 70304747 1833181 1831473 NC_000014.9 scf7180000172815 99.47 True fake: scaffold gap size wrong estimation (local) 70301005 70302089 1835167 1834077 NC_000014.9 scf7180000172815 98.26 True fake: scaffold gap size wrong estimation (local) 70298746 70300752 1837318 1835312 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 70297953 70298544 1838186 1837601 NC_000014.9 scf7180000172815 98.82 True indel: stretch of mismatches 70297015 70297756 1839125 1838383 NC_000014.9 scf7180000172815 97.98 True relocation, scaffold gap is present, inconsistency = 28691529 98990058 98991935 1839898 1841777 NC_000014.9 scf7180000172815 98.19 True fake: scaffold gap size wrong estimation (local) 98991876 98992648 1841936 1842707 NC_000014.9 scf7180000172815 97.28 True fake: scaffold gap size wrong estimation (local) 98992855 99016582 1842870 1866497 NC_000014.9 scf7180000172815 99.06 True fake: scaffold gap size wrong estimation (local) 99016611 99028210 1866612 1878121 NC_000014.9 scf7180000172815 98.95 True fake: scaffold gap size wrong estimation (local) 99028548 99067267 1878423 1917136 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 99067725 99074063 1918496 1924585 NC_000014.9 scf7180000172815 95.88 True fake: scaffold gap size wrong estimation (local) 99074627 99090148 1925132 1940652 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 99090428 99096609 1940852 1947035 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 99096865 99104778 1947237 1955047 NC_000014.9 scf7180000172815 98.16 True fake: scaffold gap size wrong estimation (local) 99104869 99107633 1955210 1957867 NC_000014.9 scf7180000172815 95.5 True fake: scaffold gap size wrong estimation (local) 99108204 99121940 1958364 1972184 NC_000014.9 scf7180000172815 99.69 True fake: scaffold gap size wrong estimation (local) 99122131 99130872 1972266 1980930 NC_000014.9 scf7180000172815 97.81 True fake: scaffold gap size wrong estimation (local) 99131133 99140712 1981316 1990856 NC_000014.9 scf7180000172815 99.52 True fake: scaffold gap size wrong estimation (local) 99140958 99142719 1991098 1992859 NC_000014.9 scf7180000172815 100.0 True indel: stretch of mismatches 99142789 99143502 1992929 1993642 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 99143776 99152772 1993898 2003025 NC_000014.9 scf7180000172815 98.13 True fake: scaffold gap size wrong estimation (local) 99153015 99162905 2003155 2013092 NC_000014.9 scf7180000172815 99.73 True fake: scaffold gap size wrong estimation (local) 99163117 99179217 2013256 2029350 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 99179475 99186323 2029607 2036428 NC_000014.9 scf7180000172815 99.41 True fake: scaffold gap size wrong estimation (local) 99186435 99218081 2036518 2068174 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 99218343 99219057 2068339 2069053 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 99219305 99282006 2069417 2131819 NC_000014.9 scf7180000172815 99.11 True fake: scaffold gap size wrong estimation (local) 99282270 99282954 2132075 2132759 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 99283146 99287972 2132974 2137852 NC_000014.9 scf7180000172815 98.68 True relocation, scaffold gap is present, inconsistency = 74834413 24444881 24447076 2141704 2139509 NC_000014.9 scf7180000172815 99.45 True fake: scaffold gap size wrong estimation (local) 24444179 24444880 2142818 2142117 NC_000014.9 scf7180000172815 96.58 True local misassembly 24443286 24443910 2143443 2142819 NC_000014.9 scf7180000172815 99.36 True indel: indel (<= 5bp) 24441112 24443285 2145620 2143447 NC_000014.9 scf7180000172815 99.59 True indel: indel (<= 5bp) 24434656 24441111 2152078 2145623 NC_000014.9 scf7180000172815 99.77 True indel: indel (<= 5bp) 24421931 24434490 2164805 2152246 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 24393503 24421678 2192996 2164995 NC_000014.9 scf7180000172815 99.19 True fake: scaffold gap size wrong estimation (local) 24392053 24393254 2194352 2193149 NC_000014.9 scf7180000172815 99.75 True fake: scaffold gap size wrong estimation (local) 24390260 24391814 2196140 2194586 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 24388516 24390103 2197812 2196225 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 24387733 24388251 2199002 2198484 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 24386554 24387721 2201205 2200038 NC_000014.9 scf7180000172815 99.57 True fake: scaffold gap size wrong estimation (local) 24383897 24386189 2203762 2201473 NC_000014.9 scf7180000172815 99.6 True fake: scaffold gap size wrong estimation (local) 24364117 24383763 2223370 2203878 NC_000014.9 scf7180000172815 98.87 True fake: scaffold gap size wrong estimation (local) 24359067 24364024 2228454 2223480 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 24358046 24358932 2229648 2228762 NC_000014.9 scf7180000172815 99.77 True fake: scaffold gap size wrong estimation (local) 24356915 24357861 2230692 2229748 NC_000014.9 scf7180000172815 99.47 True fake: scaffold gap size wrong estimation (local) 24355904 24356447 2231877 2231334 NC_000014.9 scf7180000172815 95.96 True indel: indel (> 5bp) 24355025 24355828 2232681 2231878 NC_000014.9 scf7180000172815 99.75 True fake: scaffold gap size wrong estimation (local) 24353456 24354211 2234325 2233570 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 24348114 24353364 2239711 2234424 NC_000014.9 scf7180000172815 99.41 True fake: scaffold gap size wrong estimation (local) 24346424 24347990 2241422 2239856 NC_000014.9 scf7180000172815 99.68 True fake: scaffold gap size wrong estimation (local) 24344695 24345645 2243206 2242256 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 24327051 24344464 2260655 2243283 NC_000014.9 scf7180000172815 98.81 True fake: scaffold gap size wrong estimation (local) 24324902 24326897 2262804 2260815 NC_000014.9 scf7180000172815 99.45 True fake: scaffold gap size wrong estimation (local) 24321330 24324723 2266360 2262967 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 24289241 24321236 2298636 2266447 NC_000014.9 scf7180000172815 99.15 True fake: scaffold gap size wrong estimation (local) 24286941 24288380 2300965 2299526 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 24285985 24286634 2301772 2301123 NC_000014.9 scf7180000172815 99.54 True fake: scaffold gap size wrong estimation (local) 24275067 24285864 2312840 2301971 NC_000014.9 scf7180000172815 99.47 True fake: scaffold gap size wrong estimation (local) 24247492 24274734 2340348 2313172 NC_000014.9 scf7180000172815 99.61 True fake: scaffold gap size wrong estimation (local) 24244878 24245490 2342156 2341544 NC_000014.9 scf7180000172815 99.84 True local misassembly 24245494 24246185 2343109 2342418 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 24243493 24244210 2344448 2343731 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24241616 24243235 2346186 2344567 NC_000014.9 scf7180000172815 99.63 True fake: scaffold gap size wrong estimation (local) 24230713 24241409 2357100 2346413 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 24229491 24230003 2358316 2357804 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24228742 24229257 2358932 2358417 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24226449 24227896 2361545 2360098 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 24224338 24225156 2363493 2362675 NC_000014.9 scf7180000172815 99.88 True local misassembly 24225177 24225816 2364153 2363514 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 24223099 24223832 2365865 2365132 NC_000014.9 scf7180000172815 96.87 True local misassembly 24221839 24222852 2366879 2365866 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24220587 24221475 2368132 2367244 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 24220024 24220586 2368995 2368433 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 24215351 24218845 2373603 2370130 NC_000014.9 scf7180000172815 99.39 True fake: scaffold gap size wrong estimation (local) 24212850 24214896 2376151 2374105 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 24209213 24212455 2379875 2376680 NC_000014.9 scf7180000172815 98.13 True fake: scaffold gap size wrong estimation (local) 24205574 24208778 2383400 2380196 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24203861 24205312 2385032 2383600 NC_000014.9 scf7180000172815 98.67 True fake: scaffold gap size wrong estimation (local) 24201240 24203543 2387640 2385414 NC_000014.9 scf7180000172815 95.95 True fake: scaffold gap size wrong estimation (local) 24199918 24200434 2388948 2388432 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24198568 24199500 2390377 2389445 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24193911 24196980 2395029 2391960 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 24191137 24193410 2397772 2395499 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 24176383 24190856 2412491 2398018 NC_000014.9 scf7180000172815 99.99 True fake: scaffold gap size wrong estimation (local) 24175271 24175837 2413551 2412985 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24171548 24173968 2417369 2414949 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24167401 24168160 2421688 2420929 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 24159362 24167137 2429662 2421948 NC_000014.9 scf7180000172815 98.97 True fake: scaffold gap size wrong estimation (local) 24156766 24158851 2432294 2430209 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24154383 24156593 2434851 2432641 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24152581 24153415 2436523 2435686 NC_000014.9 scf7180000172815 98.41 True fake: scaffold gap size wrong estimation (local) 24149159 24152544 2440058 2436673 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 24142705 24149006 2446487 2440186 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 24140596 24142492 2448567 2446671 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24134143 24140318 2454881 2448763 NC_000014.9 scf7180000172815 98.99 True fake: scaffold gap size wrong estimation (local) 24129107 24133501 2459989 2455595 NC_000014.9 scf7180000172815 99.98 True fake: scaffold gap size wrong estimation (local) 24128309 24128875 2460776 2460210 NC_000014.9 scf7180000172815 98.77 True fake: scaffold gap size wrong estimation (local) 24126871 24127726 2462563 2461708 NC_000014.9 scf7180000172815 97.55 True fake: scaffold gap size wrong estimation (local) 24122494 24124713 2466727 2464508 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24120494 24122141 2468684 2467037 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 24113361 24120173 2475804 2468992 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24109713 24111579 2479255 2477389 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24106677 24109499 2482380 2479579 NC_000014.9 scf7180000172815 99.18 True fake: scaffold gap size wrong estimation (local) 24105679 24106558 2483391 2482512 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 24104638 24105678 2484487 2483447 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 24102038 24104486 2487549 2485101 NC_000014.9 scf7180000172815 99.1 True fake: scaffold gap size wrong estimation (local) 24097867 24102037 2492509 2488339 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 24096506 24097394 2494782 2493894 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 104830649 104831569 2495764 2494841 NC_000014.9 scf7180000172815 99.57 True fake: not a misassembly (possible transposable element) 24093439 24096236 2498626 2495829 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 24091821 24093438 2500456 2498839 NC_000014.9 scf7180000172815 99.81 True indel: indel (<= 5bp) 24091256 24091805 2501018 2500469 NC_000014.9 scf7180000172815 96.0 True indel: indel (> 5bp) 24090270 24091119 2501939 2501090 NC_000014.9 scf7180000172815 98.71 True indel: indel (> 5bp) 24089172 24090269 2503046 2501949 NC_000014.9 scf7180000172815 99.73 True fake: scaffold gap size wrong estimation (local) 24086157 24088670 2506083 2503570 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 24064113 24085982 2528143 2506242 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 24049664 24063856 2542607 2528381 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 24048412 24049352 2543867 2542927 NC_000014.9 scf7180000172815 99.68 True indel: stretch of mismatches 24046359 24048325 2545918 2543954 NC_000014.9 scf7180000172815 99.54 True relocation, scaffold gap is present, inconsistency = 45072 24000001 24000767 2547204 2546438 NC_000014.9 scf7180000172815 99.87 True indel: indel (<= 5bp) 23999350 24000000 2547858 2547208 NC_000014.9 scf7180000172815 96.62 True indel: indel (<= 5bp) 23998674 23999344 2548529 2547859 NC_000014.9 scf7180000172815 99.25 True indel: indel (<= 5bp) 23995698 23998672 2551504 2548530 NC_000014.9 scf7180000172815 99.16 True fake: scaffold gap size wrong estimation (local) 23995165 23995697 2552445 2551913 NC_000014.9 scf7180000172815 97.75 True indel: indel (<= 5bp) 23993970 23995164 2553645 2552451 NC_000014.9 scf7180000172815 97.91 True relocation, inconsistency = 35136 23957267 23958833 2555212 2553646 NC_000014.9 scf7180000172815 98.66 True fake: scaffold gap size wrong estimation (local) 23955374 23956614 2557125 2555895 NC_000014.9 scf7180000172815 95.44 True fake: scaffold gap size wrong estimation (local) 23951651 23953154 2560983 2559490 NC_000014.9 scf7180000172815 95.61 True fake: scaffold gap size wrong estimation (local) 23949483 23950194 2563667 2562956 NC_000014.9 scf7180000172815 99.44 True relocation, inconsistency = 4914733 28864990 28890202 2563730 2588913 NC_000014.9 scf7180000172815 98.84 True fake: scaffold gap size wrong estimation (local) 28890355 28897425 2589016 2596086 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 28897535 28907206 2596179 2606200 NC_000014.9 scf7180000172815 96.85 True fake: scaffold gap size wrong estimation (local) 28907809 28908788 2606704 2607683 NC_000014.9 scf7180000172815 100.0 True relocation, scaffold gap is present, inconsistency = -3179179 25729630 25731919 2607704 2609994 NC_000014.9 scf7180000172815 99.78 True fake: scaffold gap size wrong estimation (local) 25732202 25734959 2610264 2613021 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 25735108 25745264 2613103 2623728 NC_000014.9 scf7180000172815 95.61 True fake: scaffold gap size wrong estimation (local) 25745667 25771343 2624085 2649730 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 25776962 25778761 2656232 2658031 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 25784291 25807421 2663593 2686742 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 25807760 25828146 2686953 2707318 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 25828376 25852141 2707581 2731262 NC_000014.9 scf7180000172815 99.63 True fake: scaffold gap size wrong estimation (local) 25857455 25866263 2736703 2745513 NC_000014.9 scf7180000172815 99.58 True fake: scaffold gap size wrong estimation (local) 25867622 25903950 2746687 2782800 NC_000014.9 scf7180000172815 98.92 True fake: scaffold gap size wrong estimation (local) 25904157 25924333 2782969 2803145 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 25925235 25927617 2803974 2806356 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 25927878 25947661 2806593 2826404 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 25948844 25954324 2827486 2832968 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 25954607 25960252 2833169 2838814 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 25963757 25975897 2844752 2856927 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 25976049 25980467 2857022 2861440 NC_000014.9 scf7180000172815 99.75 True indel: indel (<= 5bp) 25980688 25982139 2861660 2863107 NC_000014.9 scf7180000172815 99.52 True relocation, inconsistency = 12282056 38264571 38265760 2864672 2863483 NC_000014.9 scf7180000172815 97.65 True fake: scaffold gap size wrong estimation (local) 38238352 38263323 2890910 2865953 NC_000014.9 scf7180000172815 99.68 True fake: not a misassembly (possible transposable element) 52137035 52138691 2892588 2890932 NC_000014.9 scf7180000172815 99.82 True fake: not a misassembly (possible transposable element) 38230206 38238232 2900712 2892686 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 38227240 38230016 2904345 2901569 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 38224321 38227239 2914096 2911178 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 38223402 38224111 2914909 2914200 NC_000014.9 scf7180000172815 99.58 True fake: not a misassembly (possible transposable element) 52122977 52128010 2921365 2916315 NC_000014.9 scf7180000172815 99.45 True fake: not a misassembly (possible transposable element) 38196243 38221904 2947155 2921518 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 38191419 38192048 2951930 2951301 NC_000014.9 scf7180000172815 99.68 True fake: scaffold gap size wrong estimation (local) 38188724 38190723 2954604 2952605 NC_000014.9 scf7180000172815 98.75 True indel: indel (> 5bp) 38186690 38188702 2956617 2954605 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 38182414 38186723 2961463 2957154 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 38174582 38182276 2969260 2961538 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 38164303 38174323 2979417 2969432 NC_000014.9 scf7180000172815 99.37 True fake: scaffold gap size wrong estimation (local) 38122480 38164057 3021199 2979664 NC_000014.9 scf7180000172815 99.63 True fake: scaffold gap size wrong estimation (local) 38118907 38122336 3024872 3021433 NC_000014.9 scf7180000172815 99.62 True fake: scaffold gap size wrong estimation (local) 38103234 38118252 3040437 3025478 NC_000014.9 scf7180000172815 99.59 True fake: scaffold gap size wrong estimation (local) 38101327 38102167 3042122 3041287 NC_000014.9 scf7180000172815 99.29 True fake: scaffold gap size wrong estimation (local) 38096087 38100246 3047498 3043467 NC_000014.9 scf7180000172815 96.8 True fake: not a misassembly (possible transposable element) 89468463 89470307 3067692 3065848 NC_000014.9 scf7180000172815 99.89 True fake: not a misassembly (possible transposable element) 38076777 38078380 3069296 3067693 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 38058988 38075659 3087348 3070479 NC_000014.9 scf7180000172815 99.05 True fake: scaffold gap size wrong estimation (local) 38033740 38056905 3112424 3089261 NC_000014.9 scf7180000172815 99.97 True fake: not a misassembly (possible transposable element) 102383477 102384168 3112425 3113116 NC_000014.9 scf7180000172815 99.58 True fake: not a misassembly (possible transposable element) 38030424 38033534 3116247 3113137 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 38010288 38030307 3137559 3116905 NC_000014.9 scf7180000172815 97.1 True fake: scaffold gap size wrong estimation (local) 37967246 38010043 3180529 3137810 NC_000014.9 scf7180000172815 98.33 True fake: scaffold gap size wrong estimation (local) 37964698 37967061 3183024 3180661 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 37958532 37964714 3191070 3184882 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 37956358 37958314 3193147 3191191 NC_000014.9 scf7180000172815 99.8 True fake: scaffold gap size wrong estimation (local) 37953330 37954495 3195851 3194688 NC_000014.9 scf7180000172815 96.32 True fake: scaffold gap size wrong estimation (local) 37948405 37950397 3201086 3199094 NC_000014.9 scf7180000172815 99.85 True local misassembly 37946947 37948404 3202764 3201307 NC_000014.9 scf7180000172815 98.49 True indel: indel (<= 5bp) 37944432 37946946 3205280 3202766 NC_000014.9 scf7180000172815 99.09 True fake: scaffold gap size wrong estimation (local) 37935400 37945410 3215879 3205965 NC_000014.9 scf7180000172815 98.93 True fake: scaffold gap size wrong estimation (local) 37923455 37935437 3228041 3216058 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 37922447 37923183 3228977 3228241 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 37915172 37919700 3235947 3231394 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 37892599 37914943 3258534 3236174 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 37891199 37892467 3260223 3258955 NC_000014.9 scf7180000172815 99.05 True fake: scaffold gap size wrong estimation (local) 37886359 37890624 3265708 3261443 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 37883717 37884579 3268097 3267235 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 37882440 37883037 3269776 3269179 NC_000014.9 scf7180000172815 96.66 True local misassembly 37880552 37882174 3271399 3269777 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 37863774 37880010 3288036 3271918 NC_000014.9 scf7180000172815 99.17 True fake: scaffold gap size wrong estimation (local) 37843223 37863065 3308605 3288765 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 37841113 37843090 3310719 3308738 NC_000014.9 scf7180000172815 99.5 True fake: scaffold gap size wrong estimation (local) 37839912 37840884 3311988 3311037 NC_000014.9 scf7180000172815 97.38 True fake: scaffold gap size wrong estimation (local) 37832989 37839101 3318890 3312770 NC_000014.9 scf7180000172815 99.77 True fake: scaffold gap size wrong estimation (local) 37802983 37832333 3348607 3319402 NC_000014.9 scf7180000172815 99.29 True fake: scaffold gap size wrong estimation (local) 37786545 37802778 3365059 3348847 NC_000014.9 scf7180000172815 99.72 True relocation, scaffold gap is present, inconsistency = -39901819 77685630 77686685 3367791 3366738 NC_000014.9 scf7180000172815 99.62 True fake: scaffold gap size wrong estimation (local) 77683185 77685185 3370139 3368169 NC_000014.9 scf7180000172815 96.06 True indel: indel (> 5bp) 77680946 77683141 3372319 3370166 NC_000014.9 scf7180000172815 97.83 True fake: scaffold gap size wrong estimation (local) 77678995 77680678 3374270 3372593 NC_000014.9 scf7180000172815 99.22 True fake: scaffold gap size wrong estimation (local) 77675469 77678848 3377782 3374505 NC_000014.9 scf7180000172815 96.36 True fake: scaffold gap size wrong estimation (local) 77671539 77675249 3381486 3377878 NC_000014.9 scf7180000172815 97.02 True fake: scaffold gap size wrong estimation (local) 77669482 77670656 3383764 3382551 NC_000014.9 scf7180000172815 99.39 True fake: scaffold gap size wrong estimation (local) 77665749 77668745 3387242 3384274 NC_000014.9 scf7180000172815 97.1 True fake: scaffold gap size wrong estimation (local) 77662085 77664596 3390829 3388316 NC_000014.9 scf7180000172815 99.48 True fake: scaffold gap size wrong estimation (local) 77659783 77661720 3393195 3391314 NC_000014.9 scf7180000172815 96.69 True fake: scaffold gap size wrong estimation (local) 77657969 77659430 3395043 3393582 NC_000014.9 scf7180000172815 96.92 True fake: scaffold gap size wrong estimation (local) 77656001 77657168 3396924 3395757 NC_000014.9 scf7180000172815 99.57 True fake: scaffold gap size wrong estimation (local) 77654860 77655816 3397988 3397032 NC_000014.9 scf7180000172815 99.69 True fake: scaffold gap size wrong estimation (local) 77653479 77654529 3399531 3398481 NC_000014.9 scf7180000172815 98.38 True fake: scaffold gap size wrong estimation (local) 77652622 77653292 3400381 3399711 NC_000014.9 scf7180000172815 96.72 True fake: scaffold gap size wrong estimation (local) 77650885 77651432 3402115 3401568 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77648705 77650717 3404252 3402194 NC_000014.9 scf7180000172815 99.35 True fake: scaffold gap size wrong estimation (local) 77646648 77648538 3406376 3404486 NC_000014.9 scf7180000172815 99.95 True fake: not a misassembly (possible transposable element) 80738728 80740530 3406377 3408181 NC_000014.9 scf7180000172815 99.46 True fake: not a misassembly (possible transposable element) 77644060 77645416 3409562 3408206 NC_000014.9 scf7180000172815 100.0 True local misassembly 77645440 77646198 3410383 3409625 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 77643245 77644007 3412680 3411918 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77640772 77642863 3415572 3413481 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 77638326 77640438 3418910 3416253 NC_000014.9 scf7180000172815 99.43 True fake: scaffold gap size wrong estimation (local) 77637349 77638223 3420623 3419749 NC_000014.9 scf7180000172815 99.66 True fake: scaffold gap size wrong estimation (local) 77634892 77635923 3423513 3422482 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 77633239 77633764 3425003 3424478 NC_000014.9 scf7180000172815 98.48 True fake: scaffold gap size wrong estimation (local) 77631529 77632246 3427068 3426351 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77630692 77631252 3427879 3427319 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77628602 77630550 3429940 3428031 NC_000014.9 scf7180000172815 97.82 True fake: scaffold gap size wrong estimation (local) 77626814 77627846 3431771 3430739 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77624999 77626176 3435254 3434077 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77620553 77624909 3439723 3435346 NC_000014.9 scf7180000172815 96.27 True fake: scaffold gap size wrong estimation (local) 77614987 77620392 3445333 3439908 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77611826 77614441 3448397 3445782 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (local) 77604880 77609575 3455157 3450428 NC_000014.9 scf7180000172815 99.7 True fake: scaffold gap size wrong estimation (local) 77597898 77604644 3462143 3455390 NC_000014.9 scf7180000172815 99.85 True fake: scaffold gap size wrong estimation (extensive) 77596412 77597527 3472418 3471303 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77595125 77596070 3473579 3472634 NC_000014.9 scf7180000172815 100.0 True fake: not a misassembly (possible transposable element) 106113817 106114456 3473630 3474272 NC_000014.9 scf7180000172815 97.67 True fake: not a misassembly (possible transposable element) 77593105 77595184 3476402 3474323 NC_000014.9 scf7180000172815 99.9 True relocation, scaffold gap is present, inconsistency = 28518847 106114093 106116136 3476464 3478551 NC_000014.9 scf7180000172815 99.31 True relocation, scaffold gap is present, inconsistency = 171429 106287674 106288965 3478660 3479950 NC_000014.9 scf7180000172815 99.77 True fake: scaffold gap size wrong estimation (local) 106289719 106292343 3480643 3483267 NC_000014.9 scf7180000172815 99.47 True fake: scaffold gap size wrong estimation (local) 106293146 106293968 3483974 3484796 NC_000014.9 scf7180000172815 99.51 True fake: not a misassembly (possible transposable element) 106119047 106120547 3484958 3486457 NC_000014.9 scf7180000172815 99.6 True fake: not a misassembly (possible transposable element) 106293895 106296695 3486474 3489274 NC_000014.9 scf7180000172815 99.93 True fake: not a misassembly (possible transposable element) 106121582 106125520 3489340 3493225 NC_000014.9 scf7180000172815 98.39 True fake: not a misassembly (possible transposable element) 106296770 106297385 3493276 3493891 NC_000014.9 scf7180000172815 99.68 True relocation, scaffold gap is present, inconsistency = -172095 106125716 106126817 3494317 3495418 NC_000014.9 scf7180000172815 99.36 True fake: scaffold gap size wrong estimation (local) 106127031 106129040 3496084 3498093 NC_000014.9 scf7180000172815 99.75 True fake: not a misassembly (possible transposable element) 77590678 77591774 3500773 3499677 NC_000014.9 scf7180000172815 99.82 True fake: not a misassembly (possible transposable element) 106130610 106131305 3500930 3501625 NC_000014.9 scf7180000172815 99.14 True local misassembly 106128938 106129650 3501646 3502358 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 106131876 106132804 3504738 3505662 NC_000014.9 scf7180000172815 99.35 True fake: scaffold gap size wrong estimation (local) 106133285 106135696 3506400 3508786 NC_000014.9 scf7180000172815 97.97 True fake: scaffold gap size wrong estimation (local) 106138381 106139150 3511319 3512089 NC_000014.9 scf7180000172815 99.22 True fake: not a misassembly (possible transposable element) 77587764 77588795 3514156 3513126 NC_000014.9 scf7180000172815 99.61 True fake: not a misassembly (possible transposable element) 106140484 106141692 3514577 3515784 NC_000014.9 scf7180000172815 99.26 True relocation, scaffold gap is present, inconsistency = 28553056 77580700 77586969 3522497 3516243 NC_000014.9 scf7180000172815 98.78 True fake: scaffold gap size wrong estimation (local) 77578690 77580474 3524596 3522812 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 77571512 77577721 3531956 3525934 NC_000014.9 scf7180000172815 96.73 True fake: scaffold gap size wrong estimation (local) 77570224 77571419 3533408 3532213 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 77568825 77569820 3535003 3534008 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 77567188 77568573 3536628 3535246 NC_000014.9 scf7180000172815 99.42 True fake: scaffold gap size wrong estimation (local) 77565142 77566572 3539269 3537839 NC_000014.9 scf7180000172815 99.72 True fake: scaffold gap size wrong estimation (local) 77564300 77565040 3540131 3539400 NC_000014.9 scf7180000172815 98.65 True fake: scaffold gap size wrong estimation (local) 77561619 77564032 3542859 3540467 NC_000014.9 scf7180000172815 99.0 True fake: scaffold gap size wrong estimation (local) 77554056 77561509 3550622 3543090 NC_000014.9 scf7180000172815 99.5 True fake: scaffold gap size wrong estimation (local) 77552809 77553511 3551888 3551186 NC_000014.9 scf7180000172815 97.16 True local misassembly 77551405 77552701 3553185 3551889 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 77539668 77550906 3564827 3553694 NC_000014.9 scf7180000172815 97.59 True fake: scaffold gap size wrong estimation (local) 77538833 77539495 3565638 3564976 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77534194 77538606 3570353 3565727 NC_000014.9 scf7180000172815 97.71 True fake: scaffold gap size wrong estimation (local) 77533319 77534009 3571293 3570603 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 77531785 77532647 3572694 3571832 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 77529777 77531526 3574729 3573023 NC_000014.9 scf7180000172815 96.38 True fake: scaffold gap size wrong estimation (local) 77529079 77529624 3575463 3574899 NC_000014.9 scf7180000172815 99.45 True fake: scaffold gap size wrong estimation (local) 77528473 77528995 3576149 3575627 NC_000014.9 scf7180000172815 95.98 True local misassembly 77527750 77528325 3576725 3576150 NC_000014.9 scf7180000172815 99.83 True indel: indel (<= 5bp) 77527167 77527748 3577307 3576726 NC_000014.9 scf7180000172815 99.83 True fake: scaffold gap size wrong estimation (local) 77525914 77526953 3578561 3577520 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 77519516 77525449 3584853 3578878 NC_000014.9 scf7180000172815 99.66 True fake: scaffold gap size wrong estimation (local) 77513984 77519235 3590452 3585088 NC_000014.9 scf7180000172815 98.87 True fake: scaffold gap size wrong estimation (local) 77505549 77512844 3598785 3591531 NC_000014.9 scf7180000172815 99.24 True fake: not a misassembly (possible transposable element) 34548513 34549265 3599538 3598786 NC_000014.9 scf7180000172815 99.88 True fake: not a misassembly (possible transposable element) 77504105 77505615 3601102 3599589 NC_000014.9 scf7180000172815 99.47 True fake: not a misassembly (possible transposable element) 73615593 73616440 3601143 3601978 NC_000014.9 scf7180000172815 98.35 True fake: not a misassembly (possible transposable element) 77501935 77503034 3603609 3602510 NC_000014.9 scf7180000172815 99.73 True fake: not a misassembly (possible transposable element) 73618037 73618872 3603686 3604521 NC_000014.9 scf7180000172815 99.76 True fake: not a misassembly (possible transposable element) 77497376 77501181 3609406 3605413 NC_000014.9 scf7180000172815 97.44 True fake: scaffold gap size wrong estimation (local) 77494614 77496115 3612088 3610587 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 77492749 77493635 3614229 3613338 NC_000014.9 scf7180000172815 99.66 True fake: scaffold gap size wrong estimation (local) 77491975 77492528 3614872 3614319 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77490391 77491532 3616270 3615129 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 77487174 77489902 3619476 3616759 NC_000014.9 scf7180000172815 99.38 True fake: scaffold gap size wrong estimation (local) 77483400 77487073 3623332 3619575 NC_000014.9 scf7180000172815 99.65 True fake: scaffold gap size wrong estimation (local) 77481340 77483309 3625267 3623353 NC_000014.9 scf7180000172815 97.13 True fake: scaffold gap size wrong estimation (local) 77479876 77480553 3626725 3626020 NC_000014.9 scf7180000172815 98.4 True fake: scaffold gap size wrong estimation (local) 77471506 77479389 3634932 3627178 NC_000014.9 scf7180000172815 97.93 True fake: scaffold gap size wrong estimation (local) 77468844 77470943 3637707 3635526 NC_000014.9 scf7180000172815 96.99 True fake: scaffold gap size wrong estimation (local) 77467709 77468733 3638895 3637862 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 77463603 77467439 3642882 3639029 NC_000014.9 scf7180000172815 98.71 True fake: scaffold gap size wrong estimation (local) 77461357 77463382 3645352 3643327 NC_000014.9 scf7180000172815 99.8 True fake: scaffold gap size wrong estimation (local) 77454678 77460925 3652008 3645763 NC_000014.9 scf7180000172815 99.95 True fake: scaffold gap size wrong estimation (local) 77448219 77454470 3658352 3652101 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 77445941 77447047 3660566 3659460 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 77443993 77444603 3662040 3661430 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77440990 77443705 3664949 3662234 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77438377 77440823 3667512 3665114 NC_000014.9 scf7180000172815 97.73 True fake: scaffold gap size wrong estimation (local) 77434867 77438241 3671007 3667603 NC_000014.9 scf7180000172815 99.62 True fake: scaffold gap size wrong estimation (local) 77433474 77434662 3672342 3671154 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77430557 77433238 3675283 3672577 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 77426251 77430505 3679558 3675304 NC_000014.9 scf7180000172815 99.98 True fake: scaffold gap size wrong estimation (local) 77420393 77426124 3685404 3679672 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 77416867 77419082 3688794 3686579 NC_000014.9 scf7180000172815 99.86 True fake: scaffold gap size wrong estimation (local) 77415085 77416374 3690627 3689346 NC_000014.9 scf7180000172815 98.61 True fake: scaffold gap size wrong estimation (local) 77413370 77414935 3692289 3690726 NC_000014.9 scf7180000172815 99.68 True fake: scaffold gap size wrong estimation (local) 77412024 77412649 3693999 3693369 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77405364 77411215 3700088 3694326 NC_000014.9 scf7180000172815 97.01 True fake: scaffold gap size wrong estimation (local) 77402953 77405199 3702528 3700282 NC_000014.9 scf7180000172815 99.96 True fake: scaffold gap size wrong estimation (local) 77401510 77402415 3704090 3703185 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 77398896 77400608 3706669 3704957 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 77396523 77397625 3708937 3707835 NC_000014.9 scf7180000172815 99.91 True relocation, scaffold gap is present, inconsistency = 46329654 31059931 31061229 3715874 3714577 NC_000014.9 scf7180000172815 99.54 True fake: scaffold gap size wrong estimation (local) 31056996 31058554 3718638 3717030 NC_000014.9 scf7180000172815 97.86 True fake: scaffold gap size wrong estimation (local) 31054869 31055728 3720597 3719738 NC_000014.9 scf7180000172815 97.56 True fake: scaffold gap size wrong estimation (local) 31053589 31054512 3721832 3720909 NC_000014.9 scf7180000172815 97.84 True indel: indel (> 5bp) 31053005 31053581 3722409 3721833 NC_000014.9 scf7180000172815 96.53 True fake: scaffold gap size wrong estimation (local) 31051257 31052505 3723892 3722644 NC_000014.9 scf7180000172815 100.0 True indel: indel (<= 5bp) 31050292 31051255 3724856 3723893 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31049478 31049994 3725499 3724983 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 31046828 31047412 3728023 3727439 NC_000014.9 scf7180000172815 96.58 True fake: scaffold gap size wrong estimation (local) 31043189 31044509 3731438 3730118 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31041418 31042044 3733291 3732665 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 31039864 31040913 3734465 3733391 NC_000014.9 scf7180000172815 99.53 True fake: scaffold gap size wrong estimation (local) 31036005 31039301 3738377 3735081 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 31033492 31034626 3740782 3739648 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31022384 31032538 3751967 3741829 NC_000014.9 scf7180000172815 98.86 True fake: scaffold gap size wrong estimation (local) 31018146 31022169 3756311 3752133 NC_000014.9 scf7180000172815 96.5 True fake: scaffold gap size wrong estimation (local) 31011938 31012899 3762175 3761214 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 31010969 31011601 3763308 3762676 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 31008364 31010260 3765854 3763942 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 31005296 31007969 3768955 3766325 NC_000014.9 scf7180000172815 97.5 True fake: scaffold gap size wrong estimation (local) 31004580 31005134 3769722 3769168 NC_000014.9 scf7180000172815 99.82 True fake: scaffold gap size wrong estimation (local) 31003343 31004427 3770954 3769864 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 31002473 31003007 3771727 3771193 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30996773 31001906 3777436 3772302 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 30993836 30996644 3780427 3777567 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 30990392 30991871 3784198 3782719 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 30987946 30989527 3786660 3785079 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 30985568 30987269 3789027 3787327 NC_000014.9 scf7180000172815 99.65 True fake: scaffold gap size wrong estimation (local) 30983478 30984137 3791593 3790934 NC_000014.9 scf7180000172815 99.55 True fake: scaffold gap size wrong estimation (local) 30982439 30983477 3793136 3792098 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30979739 30980459 3795685 3794965 NC_000014.9 scf7180000172815 100.0 True local misassembly 30980655 30981880 3796949 3795724 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 30979054 30979618 3798355 3797791 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30973175 30978827 3804268 3798627 NC_000014.9 scf7180000172815 95.93 True fake: scaffold gap size wrong estimation (local) 30966146 30967738 3805893 3804301 NC_000014.9 scf7180000172815 99.26 True local misassembly 30970410 30972346 3807830 3805894 NC_000014.9 scf7180000172815 99.74 True fake: scaffold gap size wrong estimation (local) 30963678 30964667 3808840 3807851 NC_000014.9 scf7180000172815 99.9 True local misassembly 30968681 30969241 3809707 3809147 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30964921 30965598 3810751 3810074 NC_000014.9 scf7180000172815 99.71 True fake: scaffold gap size wrong estimation (local) 30960885 30963509 3814662 3812038 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 30957469 30960620 3818051 3814900 NC_000014.9 scf7180000172815 99.9 True fake: scaffold gap size wrong estimation (local) 30951990 30957196 3823445 3818401 NC_000014.9 scf7180000172815 96.78 True fake: scaffold gap size wrong estimation (local) 30949548 30952672 3826571 3823565 NC_000014.9 scf7180000172815 95.91 True fake: scaffold gap size wrong estimation (local) 30946984 30949383 3829146 3826747 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 30941903 30946734 3834242 3829416 NC_000014.9 scf7180000172815 99.75 True fake: scaffold gap size wrong estimation (local) 30932194 30941724 3843873 3834331 NC_000014.9 scf7180000172815 99.84 True fake: scaffold gap size wrong estimation (local) 30927943 30932023 3848092 3844001 NC_000014.9 scf7180000172815 99.78 True fake: scaffold gap size wrong estimation (local) 30924463 30927691 3851583 3848373 NC_000014.9 scf7180000172815 99.31 True fake: scaffold gap size wrong estimation (local) 30916497 30924213 3859402 3851781 NC_000014.9 scf7180000172815 98.49 True fake: scaffold gap size wrong estimation (local) 30914625 30916299 3861252 3859579 NC_000014.9 scf7180000172815 99.7 True fake: scaffold gap size wrong estimation (local) 30902191 30914438 3874118 3861414 NC_000014.9 scf7180000172815 98.24 True fake: scaffold gap size wrong estimation (local) 30900374 30901915 3875814 3874310 NC_000014.9 scf7180000172815 97.17 True fake: scaffold gap size wrong estimation (local) 30897528 30900113 3878699 3876114 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 30895102 30897383 3881149 3878868 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30893433 30894902 3882783 3881314 NC_000014.9 scf7180000172815 99.93 True fake: scaffold gap size wrong estimation (local) 30881968 30893151 3894143 3883044 NC_000014.9 scf7180000172815 98.74 True fake: scaffold gap size wrong estimation (local) 30872130 30881763 3903886 3894284 NC_000014.9 scf7180000172815 99.46 True fake: scaffold gap size wrong estimation (local) 30869371 30871981 3906563 3903953 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30862817 30869202 3913120 3906730 NC_000014.9 scf7180000172815 99.94 True fake: scaffold gap size wrong estimation (local) 30858845 30862596 3917019 3913270 NC_000014.9 scf7180000172815 99.79 True fake: scaffold gap size wrong estimation (local) 30856837 30858678 3919006 3917165 NC_000014.9 scf7180000172815 99.89 True fake: scaffold gap size wrong estimation (local) 30853320 30856494 3922553 3919361 NC_000014.9 scf7180000172815 99.87 True fake: scaffold gap size wrong estimation (local) 30844085 30853127 3931646 3922709 NC_000014.9 scf7180000172815 98.71 True fake: scaffold gap size wrong estimation (local) 30839588 30843565 3936138 3932161 NC_000014.9 scf7180000172815 99.92 True fake: scaffold gap size wrong estimation (local) 30837425 30839470 3938298 3936253 NC_000014.9 scf7180000172815 99.76 True fake: scaffold gap size wrong estimation (local) 30835924 30837231 3939768 3938465 NC_000014.9 scf7180000172815 99.62 True fake: scaffold gap size wrong estimation (local) 30834260 30835708 3941648 3940183 NC_000014.9 scf7180000172815 99.03 True fake: scaffold gap size wrong estimation (local) 30831086 30833249 3944602 3942440 NC_000014.9 scf7180000172815 99.58 True fake: scaffold gap size wrong estimation (local) 30829194 30830905 3946551 3944832 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30828227 30828996 3947482 3946711 NC_000014.9 scf7180000172815 99.48 True fake: scaffold gap size wrong estimation (local) 30816720 30827683 3958954 3948011 NC_000014.9 scf7180000172815 99.63 True fake: scaffold gap size wrong estimation (local) 30786073 30816184 3989045 3959511 NC_000014.9 scf7180000172815 97.93 True fake: not a misassembly (possible transposable element) 99953004 99954238 3990442 3989207 NC_000014.9 scf7180000172815 99.43 True fake: not a misassembly (possible transposable element) 30778305 30786117 3998263 3990474 NC_000014.9 scf7180000172815 99.54 True fake: scaffold gap size wrong estimation (local) 30768430 30778204 4008448 3998374 NC_000014.9 scf7180000172815 95.83 True fake: scaffold gap size wrong estimation (local) 30750463 30768152 4027235 4008730 NC_000014.9 scf7180000172815 96.04 True fake: scaffold gap size wrong estimation (local) 30746030 30750296 4031616 4027350 NC_000014.9 scf7180000172815 99.98 True fake: scaffold gap size wrong estimation (local) 30744937 30745792 4032677 4031822 NC_000014.9 scf7180000172815 99.88 True fake: scaffold gap size wrong estimation (local) 30739608 30744776 4038032 4032865 NC_000014.9 scf7180000172815 99.81 True fake: scaffold gap size wrong estimation (local) 30732040 30739466 4045577 4038115 NC_000014.9 scf7180000172815 99.54 True fake: scaffold gap size wrong estimation (local) 30729008 30729930 4048450 4047528 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30717889 30728855 4059544 4048640 NC_000014.9 scf7180000172815 99.4 True fake: scaffold gap size wrong estimation (local) 30715574 30717684 4061842 4059732 NC_000014.9 scf7180000172815 99.43 True fake: scaffold gap size wrong estimation (local) 30714380 30715316 4062994 4062058 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30704218 30714089 4073105 4063213 NC_000014.9 scf7180000172815 99.99 True fake: scaffold gap size wrong estimation (local) 30690773 30703925 4086431 4073318 NC_000014.9 scf7180000172815 99.49 True fake: scaffold gap size wrong estimation (local) 30681208 30684736 4102065 4098537 NC_000014.9 scf7180000172815 99.97 True fake: scaffold gap size wrong estimation (local) 30658650 30664289 4124951 4119312 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30642272 30655875 4140680 4127319 NC_000014.9 scf7180000172815 97.99 True fake: scaffold gap size wrong estimation (local) 30599492 30642137 4183954 4140848 NC_000014.9 scf7180000172815 98.07 True fake: scaffold gap size wrong estimation (local) 30598315 30599289 4185039 4184065 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30594600 30598162 4188765 4185192 NC_000014.9 scf7180000172815 99.91 True fake: scaffold gap size wrong estimation (local) 30580476 30594434 4202666 4188877 NC_000014.9 scf7180000172815 98.78 True fake: scaffold gap size wrong estimation (local) 30577231 30580286 4205835 4202780 NC_000014.9 scf7180000172815 100.0 True fake: scaffold gap size wrong estimation (local) 30576498 30577045 4206589 4206042 NC_000014.9 scf7180000172815 99.64 True fake: scaffold gap size wrong estimation (local) 30574826 30576159 4208190 4206857 NC_000014.9 scf7180000172815 100.0 True CONTIG scf7180000172815 4208965 misassembled CONTIG scf7180000172816 618 unaligned CONTIG scf7180000172819 222 unaligned CONTIG scf7180000172830 216 unaligned CONTIG scf7180000172831 472 unaligned CONTIG scf7180000172835 208 unaligned CONTIG scf7180000172840 242 unaligned CONTIG scf7180000172841 383 unaligned 18935630 18936494 1 865 NC_000014.9 scf7180000172842 100.0 True CONTIG scf7180000172842 865 correct CONTIG scf7180000172851 391 unaligned CONTIG scf7180000172853 207 unaligned