S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 24764963 24772437 1 8238 NC_000014.9 scf1 97.57 True fake: scaffold gap size wrong estimation (local) 24772940 24779600 9549 16209 NC_000014.9 scf1 99.85 True fake: scaffold gap size wrong estimation (local) 24779501 24845285 16885 83448 NC_000014.9 scf1 99.75 True fake: scaffold gap size wrong estimation (local) 24845217 24867978 84160 107663 NC_000014.9 scf1 99.87 True fake: scaffold gap size wrong estimation (local) 24867888 24882150 108384 122647 NC_000014.9 scf1 99.9 True fake: scaffold gap size wrong estimation (local) 24882400 24888793 123668 130062 NC_000014.9 scf1 99.87 True fake: scaffold gap size wrong estimation (local) 24888724 24897217 130740 139231 NC_000014.9 scf1 99.69 True fake: scaffold gap size wrong estimation (local) 24897408 24930925 140314 176523 NC_000014.9 scf1 98.99 True fake: scaffold gap size wrong estimation (local) 24931144 24936911 177483 183252 NC_000014.9 scf1 99.84 True fake: scaffold gap size wrong estimation (local) 24936818 24951227 183929 199937 NC_000014.9 scf1 99.51 True fake: scaffold gap size wrong estimation (local) 24951132 24962381 201011 212340 NC_000014.9 scf1 99.11 True fake: scaffold gap size wrong estimation (local) 24962294 24964680 213045 215370 NC_000014.9 scf1 97.44 True fake: scaffold gap size wrong estimation (local) 24964582 24970247 216128 221791 NC_000014.9 scf1 99.96 True fake: scaffold gap size wrong estimation (local) 24970178 24996963 222478 252313 NC_000014.9 scf1 99.62 True fake: scaffold gap size wrong estimation (local) 24996869 25002375 252937 259252 NC_000014.9 scf1 99.14 True CONTIG scf1 259252 correct 57745944 57758092 4 13798 NC_000014.9 scf2 99.09 True fake: scaffold gap size wrong estimation (local) 57758002 57768887 14423 25311 NC_000014.9 scf2 99.85 True fake: scaffold gap size wrong estimation (local) 57768792 57776752 26004 33964 NC_000014.9 scf2 99.96 True fake: scaffold gap size wrong estimation (local) 57776671 57777282 34689 35300 NC_000014.9 scf2 100.0 True fake: scaffold gap size wrong estimation (local) 57777376 57788330 35747 46754 NC_000014.9 scf2 99.52 True fake: scaffold gap size wrong estimation (local) 57788239 57789445 47407 48613 NC_000014.9 scf2 100.0 True local misassembly 57789592 57791139 48614 50161 NC_000014.9 scf2 100.0 True fake: scaffold gap size wrong estimation (local) 57791081 57798148 51065 57900 NC_000014.9 scf2 96.72 True fake: scaffold gap size wrong estimation (local) 57798081 57855423 58604 115948 NC_000014.9 scf2 99.98 True fake: scaffold gap size wrong estimation (local) 57855574 57858582 116917 120190 NC_000014.9 scf2 95.14 True fake: scaffold gap size wrong estimation (local) 57858466 57865166 121134 127811 NC_000014.9 scf2 99.55 True fake: scaffold gap size wrong estimation (local) 57865084 57866000 128693 129609 NC_000014.9 scf2 100.0 True local misassembly 57866129 57866998 129610 130479 NC_000014.9 scf2 100.0 True local misassembly 57867133 57868712 130480 132059 NC_000014.9 scf2 100.0 True local misassembly 57868853 57870153 132060 133360 NC_000014.9 scf2 100.0 True fake: scaffold gap size wrong estimation (local) 57870091 57880088 134130 144912 NC_000014.9 scf2 99.41 True fake: scaffold gap size wrong estimation (local) 57879995 57891775 145635 157395 NC_000014.9 scf2 99.82 True fake: scaffold gap size wrong estimation (local) 57891683 57902400 158079 168796 NC_000014.9 scf2 99.98 True fake: scaffold gap size wrong estimation (local) 57902522 57914492 169664 182381 NC_000014.9 scf2 99.2 True fake: scaffold gap size wrong estimation (local) 57914395 57925508 183134 195773 NC_000014.9 scf2 98.29 True fake: scaffold gap size wrong estimation (local) 57925532 57937240 196446 209748 NC_000014.9 scf2 99.32 True fake: scaffold gap size wrong estimation (local) 57937145 57946477 210385 220448 NC_000014.9 scf2 99.24 True fake: scaffold gap size wrong estimation (local) 57946634 57947341 220901 221643 NC_000014.9 scf2 95.29 True fake: scaffold gap size wrong estimation (local) 57947246 57956315 222484 232289 NC_000014.9 scf2 96.73 True fake: scaffold gap size wrong estimation (local) 57956905 57966870 234101 244871 NC_000014.9 scf2 98.49 True fake: scaffold gap size wrong estimation (local) 57966777 57981067 245552 259842 NC_000014.9 scf2 99.9 True fake: scaffold gap size wrong estimation (local) 57980971 57998835 260511 279149 NC_000014.9 scf2 99.68 True fake: scaffold gap size wrong estimation (local) 57998742 58000670 279902 281832 NC_000014.9 scf2 99.74 True fake: scaffold gap size wrong estimation (local) 58000829 58006580 282795 288546 NC_000014.9 scf2 99.9 True fake: scaffold gap size wrong estimation (local) 58006817 58019099 289482 302526 NC_000014.9 scf2 98.7 True fake: scaffold gap size wrong estimation (local) 58018943 58019593 302944 303609 NC_000014.9 scf2 97.45 True fake: scaffold gap size wrong estimation (local) 58019700 58022554 304780 307634 NC_000014.9 scf2 99.61 True fake: scaffold gap size wrong estimation (local) 58022470 58029222 308337 315022 NC_000014.9 scf2 98.8 True fake: scaffold gap size wrong estimation (local) 58029443 58032636 316056 319249 NC_000014.9 scf2 99.84 True CONTIG scf2 319249 correct 26624429 26628786 4354 1 NC_000014.9 scf3 99.61 True fake: scaffold gap size wrong estimation (local) 26597508 26624526 33441 4965 NC_000014.9 scf3 99.65 True fake: scaffold gap size wrong estimation (local) 26587254 26597533 44444 34161 NC_000014.9 scf3 99.86 True fake: scaffold gap size wrong estimation (local) 26576035 26587323 57388 45148 NC_000014.9 scf3 99.18 True fake: scaffold gap size wrong estimation (local) 26574273 26576078 59805 58000 NC_000014.9 scf3 99.89 True fake: scaffold gap size wrong estimation (local) 26557522 26574041 78740 60215 NC_000014.9 scf3 99.25 True fake: scaffold gap size wrong estimation (local) 26552947 26557557 84030 79421 NC_000014.9 scf3 99.93 True fake: scaffold gap size wrong estimation (local) 26530141 26553046 109113 84686 NC_000014.9 scf3 99.87 True fake: scaffold gap size wrong estimation (local) 26523854 26530052 116117 109920 NC_000014.9 scf3 99.89 True fake: scaffold gap size wrong estimation (local) 26517096 26523767 123616 116945 NC_000014.9 scf3 99.97 True fake: scaffold gap size wrong estimation (local) 26508830 26516922 132562 124494 NC_000014.9 scf3 99.62 True fake: scaffold gap size wrong estimation (local) 26497286 26508653 146553 133554 NC_000014.9 scf3 99.1 True fake: scaffold gap size wrong estimation (local) 26492893 26495601 151723 149013 NC_000014.9 scf3 99.93 True fake: scaffold gap size wrong estimation (local) 26490978 26492988 154538 152525 NC_000014.9 scf3 99.75 True fake: scaffold gap size wrong estimation (local) 26486697 26490864 159657 155490 NC_000014.9 scf3 99.9 True fake: scaffold gap size wrong estimation (local) 26482000 26486536 165991 160578 NC_000014.9 scf3 99.87 True fake: scaffold gap size wrong estimation (local) 26476864 26482034 173680 167553 NC_000014.9 scf3 98.78 True fake: scaffold gap size wrong estimation (local) 26465323 26476938 185996 174381 NC_000014.9 scf3 99.93 True fake: scaffold gap size wrong estimation (local) 26456945 26465422 195921 186657 NC_000014.9 scf3 99.91 True fake: scaffold gap size wrong estimation (local) 26453106 26457042 200529 196597 NC_000014.9 scf3 99.7 True fake: scaffold gap size wrong estimation (local) 26440729 26453202 213702 201223 NC_000014.9 scf3 99.9 True fake: scaffold gap size wrong estimation (local) 26436353 26440824 218831 214357 NC_000014.9 scf3 99.93 True fake: scaffold gap size wrong estimation (local) 26435112 26436188 220763 219687 NC_000014.9 scf3 99.91 True fake: scaffold gap size wrong estimation (local) 26430599 26435211 226819 221412 NC_000014.9 scf3 99.12 True fake: scaffold gap size wrong estimation (local) 26424072 26430501 234181 227752 NC_000014.9 scf3 99.94 True fake: scaffold gap size wrong estimation (local) 26409428 26423466 249587 235549 NC_000014.9 scf3 99.99 True fake: scaffold gap size wrong estimation (local) 26384028 26409191 278177 250678 NC_000014.9 scf3 99.58 True fake: scaffold gap size wrong estimation (local) 26369141 26383825 293841 279159 NC_000014.9 scf3 99.8 True fake: scaffold gap size wrong estimation (local) 26368344 26369215 295562 294691 NC_000014.9 scf3 99.66 True fake: scaffold gap size wrong estimation (local) 26347775 26367709 316673 296038 NC_000014.9 scf3 99.87 True fake: scaffold gap size wrong estimation (local) 26341890 26347630 323361 317618 NC_000014.9 scf3 99.65 True fake: scaffold gap size wrong estimation (local) 26335546 26341975 331635 325178 NC_000014.9 scf3 98.7 True fake: scaffold gap size wrong estimation (local) 26321246 26335645 347437 332256 NC_000014.9 scf3 99.83 True relocation, inconsistency = -71968260 98283438 98289505 353506 347438 NC_000014.9 scf3 99.69 True fake: scaffold gap size wrong estimation (local) 98274703 98283023 363000 354664 NC_000014.9 scf3 99.62 True fake: scaffold gap size wrong estimation (local) 98270054 98274732 368400 363720 NC_000014.9 scf3 99.89 True fake: scaffold gap size wrong estimation (local) 98254218 98270147 386591 369111 NC_000014.9 scf3 99.4 True fake: scaffold gap size wrong estimation (local) 98247692 98254296 394233 387355 NC_000014.9 scf3 97.91 True fake: scaffold gap size wrong estimation (local) 98245507 98247501 397201 395206 NC_000014.9 scf3 99.75 True fake: scaffold gap size wrong estimation (local) 98239854 98245606 403678 397921 NC_000014.9 scf3 99.76 True fake: scaffold gap size wrong estimation (local) 98237798 98239630 406483 404651 NC_000014.9 scf3 99.84 True fake: scaffold gap size wrong estimation (local) 98229740 98237887 415322 407172 NC_000014.9 scf3 99.78 True fake: scaffold gap size wrong estimation (local) 98216333 98229235 429522 416623 NC_000014.9 scf3 99.81 True fake: scaffold gap size wrong estimation (local) 98197985 98216406 448652 430224 NC_000014.9 scf3 99.86 True fake: scaffold gap size wrong estimation (local) 98175525 98198078 472692 449331 NC_000014.9 scf3 99.92 True fake: scaffold gap size wrong estimation (local) 98164679 98175544 484282 473417 NC_000014.9 scf3 99.95 True fake: scaffold gap size wrong estimation (local) 98112189 98164400 537471 485269 NC_000014.9 scf3 99.97 True fake: scaffold gap size wrong estimation (local) 98107265 98112280 543163 538148 NC_000014.9 scf3 100.0 True fake: scaffold gap size wrong estimation (local) 98105802 98106862 545452 544392 NC_000014.9 scf3 100.0 True fake: scaffold gap size wrong estimation (local) 98089268 98105896 563811 546425 NC_000014.9 scf3 98.49 True fake: scaffold gap size wrong estimation (local) 98086404 98089360 567473 564498 NC_000014.9 scf3 99.36 True fake: scaffold gap size wrong estimation (local) 98079022 98086502 575604 568124 NC_000014.9 scf3 100.0 True local misassembly 98059005 98076347 592947 575605 NC_000014.9 scf3 99.75 True fake: scaffold gap size wrong estimation (local) 98058356 98059004 594394 593746 NC_000014.9 scf3 100.0 True fake: scaffold gap size wrong estimation (local) 98027887 98058452 629276 597863 NC_000014.9 scf3 99.94 True fake: scaffold gap size wrong estimation (local) 98026262 98027940 631974 630296 NC_000014.9 scf3 99.82 True fake: scaffold gap size wrong estimation (local) 98018738 98026359 641083 632708 NC_000014.9 scf3 99.32 True fake: scaffold gap size wrong estimation (local) 98016986 98018834 643679 641827 NC_000014.9 scf3 99.46 True fake: scaffold gap size wrong estimation (local) 98014970 98016337 646636 645269 NC_000014.9 scf3 99.71 True fake: scaffold gap size wrong estimation (local) 98013229 98015019 650004 648244 NC_000014.9 scf3 98.05 True fake: scaffold gap size wrong estimation (local) 98010571 98012473 653458 651555 NC_000014.9 scf3 99.84 True fake: scaffold gap size wrong estimation (local) 98005803 98009090 659110 655825 NC_000014.9 scf3 99.88 True fake: scaffold gap size wrong estimation (local) 98005069 98005898 660598 659769 NC_000014.9 scf3 100.0 True CONTIG scf3 660598 misassembled 62329184 62331910 9 2738 NC_000014.9 scf4 99.09 True fake: scaffold gap size wrong estimation (local) 62331894 62335877 3514 7476 NC_000014.9 scf4 99.17 True fake: scaffold gap size wrong estimation (local) 62335800 62342433 8158 14789 NC_000014.9 scf4 99.64 True relocation, inconsistency = 21814305 84156739 84175825 14790 33880 NC_000014.9 scf4 99.9 True fake: scaffold gap size wrong estimation (local) 84175983 84180208 34778 39003 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 84180114 84185847 39653 45385 NC_000014.9 scf4 99.95 True fake: scaffold gap size wrong estimation (local) 84185772 84192337 46073 52638 NC_000014.9 scf4 99.94 True fake: scaffold gap size wrong estimation (local) 84192454 84196900 53659 58523 NC_000014.9 scf4 97.95 True fake: scaffold gap size wrong estimation (local) 84197180 84205150 59771 67738 NC_000014.9 scf4 99.82 True relocation, inconsistency = 18867177 103072328 103072966 68377 67739 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103069502 103072422 71978 69058 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84208755 84210018 71979 73308 NC_000014.9 scf4 95.04 True fake: not a misassembly (possible transposable element) 103066986 103068959 75283 73309 NC_000014.9 scf4 99.9 True relocation, inconsistency = 18845233 84211279 84221752 75284 85757 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 103057748 103059542 87557 85758 NC_000014.9 scf4 99.56 True fake: not a misassembly (possible transposable element) 84222741 84227110 87558 91925 NC_000014.9 scf4 99.91 True fake: scaffold gap size wrong estimation (local) 84227270 84231160 92858 96748 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 103048775 103049946 97945 96749 NC_000014.9 scf4 97.83 True fake: not a misassembly (possible transposable element) 84231643 84234106 97946 100409 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 103044467 103047435 103375 100412 NC_000014.9 scf4 99.8 True fake: not a misassembly (possible transposable element) 84236316 84237288 103376 104349 NC_000014.9 scf4 99.59 True relocation, inconsistency = 18805150 103042439 103044332 106243 104350 NC_000014.9 scf4 99.95 True fake: scaffold gap size wrong estimation (local) 103040050 103042478 109647 107220 NC_000014.9 scf4 99.96 True relocation, inconsistency = 18778963 84241028 84261086 109648 129702 NC_000014.9 scf4 99.83 True fake: not a misassembly (possible transposable element) 103023370 103026073 132406 129703 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84262989 84274099 132408 143503 NC_000014.9 scf4 99.79 True fake: scaffold gap size wrong estimation (local) 84274052 84276765 144189 146900 NC_000014.9 scf4 99.78 True relocation, inconsistency = 18728403 103005169 103012452 154186 146901 NC_000014.9 scf4 99.89 True fake: not a misassembly (possible transposable element) 84282715 84286860 154210 158353 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 102999191 103001733 160896 158354 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84287452 84292525 160897 166007 NC_000014.9 scf4 99.22 True fake: not a misassembly (possible transposable element) 102992952 102995264 168697 166384 NC_000014.9 scf4 99.91 True relocation, inconsistency = 18690235 84294463 84302716 168698 176950 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 102985384 102986259 177831 176958 NC_000014.9 scf4 99.66 True fake: not a misassembly (possible transposable element) 84302754 84317468 177832 192572 NC_000014.9 scf4 99.78 True fake: not a misassembly (possible transposable element) 102972721 102974052 193904 192573 NC_000014.9 scf4 99.92 True fake: not a misassembly (possible transposable element) 84318001 84319941 193909 195760 NC_000014.9 scf4 95.42 True fake: not a misassembly (possible transposable element) 102965697 102972648 202712 195761 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 84326184 84327801 202713 204330 NC_000014.9 scf4 99.88 True fake: not a misassembly (possible transposable element) 102959239 102964814 210685 204331 NC_000014.9 scf4 96.55 True fake: not a misassembly (possible transposable element) 84332650 84336518 210687 214551 NC_000014.9 scf4 99.79 True fake: not a misassembly (possible transposable element) 75424207 75428091 214552 218436 NC_000014.9 scf4 99.97 True fake: not a misassembly (possible transposable element) 84339277 84341993 218962 221678 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 75430546 75432971 221679 224104 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 84343658 84354567 224105 235014 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 75441776 75447888 235237 241349 NC_000014.9 scf4 99.85 True fake: not a misassembly (possible transposable element) 84359740 84366077 241689 248026 NC_000014.9 scf4 99.78 True fake: not a misassembly (possible transposable element) 75453816 75456325 248043 250552 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84367901 84376187 250553 258840 NC_000014.9 scf4 99.89 True relocation, inconsistency = -8914877 75461311 75475140 258841 272667 NC_000014.9 scf4 99.9 True relocation, inconsistency = 8913254 84388395 84398132 272668 282406 NC_000014.9 scf4 99.89 True fake: not a misassembly (possible transposable element) 75483392 75486041 282419 285068 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 84400031 84401512 285069 286550 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 75486740 75487841 286551 287652 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84401802 84402377 287955 288530 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 84402308 84413033 289490 300220 NC_000014.9 scf4 99.72 True fake: scaffold gap size wrong estimation (local) 84412940 84414486 300915 302461 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 75499891 75500471 302462 303042 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 84414392 84417749 303188 306545 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 75502659 75505525 307055 309932 NC_000014.9 scf4 99.51 True fake: not a misassembly (possible transposable element) 84420286 84426796 309933 316431 NC_000014.9 scf4 99.72 True fake: not a misassembly (possible transposable element) 75511220 75512847 316432 318059 NC_000014.9 scf4 99.75 True fake: not a misassembly (possible transposable element) 84427571 84429381 318060 319870 NC_000014.9 scf4 99.83 True relocation, inconsistency = -8915510 75513872 75525615 319871 331617 NC_000014.9 scf4 99.81 True relocation, scaffold gap is present, inconsistency = 8913337 84439056 84450318 331721 343772 NC_000014.9 scf4 97.16 True relocation, inconsistency = -8914814 75535505 75538748 343773 347036 NC_000014.9 scf4 99.33 True fake: scaffold gap size wrong estimation (local) 75538686 75541691 347764 350774 NC_000014.9 scf4 99.7 True relocation, inconsistency = 8912780 84454472 84466812 350775 363115 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 75551823 75555758 363187 367110 NC_000014.9 scf4 99.01 True fake: not a misassembly (possible transposable element) 84470046 84473369 367111 370438 NC_000014.9 scf4 99.76 True relocation, inconsistency = -8916778 75556592 75564661 370439 378474 NC_000014.9 scf4 99.22 True relocation, inconsistency = 8916021 84480690 84489615 378482 387407 NC_000014.9 scf4 99.87 True relocation, inconsistency = -8917639 75571977 75574438 387408 389869 NC_000014.9 scf4 100.0 True relocation, inconsistency = 10490244 65078288 65081732 393314 389870 NC_000014.9 scf4 99.94 True relocation, inconsistency = 19412877 84494610 84500358 393315 399063 NC_000014.9 scf4 99.95 True relocation, inconsistency = -8919595 75580764 75581611 399064 399911 NC_000014.9 scf4 99.88 True fake: not a misassembly (possible transposable element) 65071206 65073217 401923 399912 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 75582878 75583392 401924 402438 NC_000014.9 scf4 99.81 True fake: not a misassembly (possible transposable element) 65068211 65070926 405670 402955 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 75585428 75586331 405718 406621 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 65065043 65068042 409620 406622 NC_000014.9 scf4 99.97 True fake: not a misassembly (possible transposable element) 75588107 75591831 409621 413345 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 65060871 65062109 414592 413354 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 75592318 75596354 414600 418636 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 65055665 65057631 420603 418637 NC_000014.9 scf4 99.95 True fake: not a misassembly (possible transposable element) 75597579 75604993 420604 427886 NC_000014.9 scf4 98.17 True fake: not a misassembly (possible transposable element) 65049021 65049800 428665 427887 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 75605024 75611646 428666 435288 NC_000014.9 scf4 99.98 True relocation, scaffold gap is present, inconsistency = 39684420 35919368 35920178 436524 435714 NC_000014.9 scf4 100.0 True local misassembly 35912638 35917874 443273 438037 NC_000014.9 scf4 99.94 True fake: not a misassembly (possible transposable element) 75617141 75619079 443274 445211 NC_000014.9 scf4 99.85 True fake: not a misassembly (possible transposable element) 35909403 35911458 447267 445212 NC_000014.9 scf4 100.0 True relocation, inconsistency = -29125288 65033682 65034690 448276 447268 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 75621349 75623071 448277 449999 NC_000014.9 scf4 99.88 True fake: not a misassembly (possible transposable element) 65031981 65032490 450856 450347 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 75623398 75626176 451082 453861 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 65020824 65029729 462767 453862 NC_000014.9 scf4 99.92 True fake: not a misassembly (possible transposable element) 75633413 75637495 462768 466850 NC_000014.9 scf4 99.95 True fake: not a misassembly (possible transposable element) 65017821 65018669 468134 467286 NC_000014.9 scf4 100.0 True relocation, inconsistency = 29126949 35890296 35890871 468710 468135 NC_000014.9 scf4 100.0 True relocation, inconsistency = 39747678 75638550 75645745 468711 475898 NC_000014.9 scf4 99.79 True relocation, inconsistency = 10626579 65011269 65011970 476600 475899 NC_000014.9 scf4 100.0 True relocation, inconsistency = 29126733 35874704 35884520 486432 476616 NC_000014.9 scf4 100.0 True relocation, inconsistency = -29128527 65002473 65003230 487190 486433 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 65000825 65002472 489687 488040 NC_000014.9 scf4 96.85 True relocation, inconsistency = 29128627 35860326 35872197 501559 489688 NC_000014.9 scf4 99.99 True relocation, inconsistency = 62422717 98294915 98305953 501560 512598 NC_000014.9 scf4 99.91 True relocation, scaffold gap is present, inconsistency = 62443965 35843840 35850393 519708 513155 NC_000014.9 scf4 100.0 True relocation, scaffold gap is present, inconsistency = 39830331 75680827 75682145 519811 521129 NC_000014.9 scf4 99.93 True relocation, inconsistency = 10702906 64976406 64977920 522644 521130 NC_000014.9 scf4 99.93 True relocation, inconsistency = 29134789 35840865 35841479 523414 522782 NC_000014.9 scf4 97.16 True relocation, scaffold gap is present, inconsistency = 39842150 75684012 75687580 523797 527364 NC_000014.9 scf4 99.89 True fake: not a misassembly (possible transposable element) 98315597 98317691 527365 529459 NC_000014.9 scf4 99.95 True fake: not a misassembly (possible transposable element) 75688926 75694424 529512 535011 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 98323220 98325149 535012 536941 NC_000014.9 scf4 99.79 True fake: not a misassembly (possible transposable element) 75695659 75704411 536973 545726 NC_000014.9 scf4 99.94 True fake: not a misassembly (possible transposable element) 98330980 98336110 545727 550857 NC_000014.9 scf4 99.79 True fake: not a misassembly (possible transposable element) 75708528 75715285 551223 557974 NC_000014.9 scf4 99.84 True fake: not a misassembly (possible transposable element) 49771724 49772933 557983 559192 NC_000014.9 scf4 99.67 True fake: not a misassembly (possible transposable element) 75715760 75717369 559250 560859 NC_000014.9 scf4 100.0 True relocation, inconsistency = 22626318 98343688 98350514 560860 567684 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 49778712 49784059 567697 573042 NC_000014.9 scf4 99.79 True fake: not a misassembly (possible transposable element) 98355410 98360536 573333 578415 NC_000014.9 scf4 99.02 True relocation, inconsistency = -22628763 75731825 75743595 578467 590236 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 98370890 98373722 590237 593069 NC_000014.9 scf4 99.89 True fake: not a misassembly (possible transposable element) 75745655 75755077 593070 602488 NC_000014.9 scf4 99.9 True relocation, inconsistency = -25948583 49806994 49807611 602988 603603 NC_000014.9 scf4 99.51 True relocation, inconsistency = 48573298 98381148 98387963 603842 610658 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 75760831 75762198 610711 612078 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 98388662 98390367 612110 613815 NC_000014.9 scf4 100.0 True relocation, inconsistency = -5489624 92900746 92908286 613818 621358 NC_000014.9 scf4 99.93 True relocation, inconsistency = -17138083 75770204 75771237 621359 622392 NC_000014.9 scf4 99.91 True relocation, inconsistency = 22625673 98396911 98398309 622393 623791 NC_000014.9 scf4 99.71 True relocation, inconsistency = -5488404 92909906 92910420 623792 624306 NC_000014.9 scf4 100.0 True relocation, inconsistency = -17138298 75772123 75772669 624307 624853 NC_000014.9 scf4 99.67 True relocation, inconsistency = 40013864 35757231 35758258 625881 624854 NC_000014.9 scf4 100.0 True relocation, inconsistency = 62641432 98399691 98401036 625882 627227 NC_000014.9 scf4 99.93 True relocation, inconsistency = -48574395 49826642 49832507 627228 633091 NC_000014.9 scf4 99.91 True relocation, inconsistency = 25947652 75780160 75785402 633092 638331 NC_000014.9 scf4 99.89 True relocation, inconsistency = 22624894 98410671 98422146 638706 650181 NC_000014.9 scf4 99.78 True relocation, inconsistency = -48576234 49845913 49847880 650182 652134 NC_000014.9 scf4 99.24 True relocation, inconsistency = 43086952 92934834 92936756 652136 654058 NC_000014.9 scf4 99.95 True relocation, inconsistency = 5488508 98425265 98430347 654059 659141 NC_000014.9 scf4 99.92 True relocation, inconsistency = -22627968 75802380 75811239 659142 668009 NC_000014.9 scf4 99.88 True relocation, inconsistency = 22627207 98438447 98446920 668010 676480 NC_000014.9 scf4 99.72 True relocation, inconsistency = -5491347 92955574 92965771 676481 686678 NC_000014.9 scf4 99.98 True relocation, inconsistency = -55399142 37566630 37572551 686679 692598 NC_000014.9 scf4 99.93 True relocation, inconsistency = 60885689 98458241 98464990 692599 699356 NC_000014.9 scf4 99.57 True relocation, inconsistency = -5489817 92975186 92979347 699369 703530 NC_000014.9 scf4 99.98 True relocation, inconsistency = -55398320 37581028 37583334 703531 705837 NC_000014.9 scf4 100.0 True relocation, inconsistency = 12304133 49887893 49888989 706263 707360 NC_000014.9 scf4 99.73 True relocation, inconsistency = 14198614 35680792 35689278 715847 707361 NC_000014.9 scf4 99.99 True relocation, inconsistency = 57300731 92990038 92992391 715876 718229 NC_000014.9 scf4 99.83 True relocation, inconsistency = -55398291 37594101 37595153 718230 719282 NC_000014.9 scf4 99.91 True relocation, inconsistency = 60885691 98481057 98482697 719495 721135 NC_000014.9 scf4 100.0 True relocation, inconsistency = 62804861 35673731 35676195 723600 721136 NC_000014.9 scf4 100.0 True relocation, inconsistency = 57320772 92996968 92998301 723601 724934 NC_000014.9 scf4 99.93 True relocation, inconsistency = -55398267 37600035 37624863 724935 749763 NC_000014.9 scf4 99.96 True relocation, inconsistency = 12296007 49920871 49922797 749764 751690 NC_000014.9 scf4 99.95 True relocation, inconsistency = 48587328 98510126 98525093 751691 766657 NC_000014.9 scf4 99.95 True relocation, inconsistency = -5489122 93035972 93044447 766658 775132 NC_000014.9 scf4 99.93 True relocation, inconsistency = -55398927 37645521 37651404 775133 781016 NC_000014.9 scf4 100.0 True relocation, inconsistency = 60886584 98537989 98538708 781017 781728 NC_000014.9 scf4 98.89 True relocation, inconsistency = -5488404 93050305 93053084 781729 784508 NC_000014.9 scf4 99.93 True relocation, inconsistency = -36789847 56263239 56302241 784510 823515 NC_000014.9 scf4 99.91 True relocation, inconsistency = 42275298 98577540 98584667 823516 830640 NC_000014.9 scf4 99.92 True relocation, inconsistency = -42275957 56308711 56326104 830641 848051 NC_000014.9 scf4 99.78 True relocation, inconsistency = -21747141 34578964 34581220 848052 850308 NC_000014.9 scf4 99.82 True relocation, inconsistency = 3132630 37713851 37724081 850309 860535 NC_000014.9 scf4 99.86 True relocation, inconsistency = 18611526 56335608 56343563 860536 868491 NC_000014.9 scf4 99.91 True relocation, inconsistency = -18612261 37731303 37732195 868492 869384 NC_000014.9 scf4 100.0 True relocation, inconsistency = -3137167 34595029 34596541 869385 870897 NC_000014.9 scf4 99.87 True relocation, inconsistency = 21748652 56345194 56345990 870898 871700 NC_000014.9 scf4 99.0 True relocation, inconsistency = -18612178 37733948 37739968 871836 877858 NC_000014.9 scf4 99.55 True relocation, inconsistency = 60882785 98622806 98630384 877911 885489 NC_000014.9 scf4 99.87 True relocation, inconsistency = -64022495 34607890 34609486 885490 887086 NC_000014.9 scf4 100.0 True relocation, inconsistency = 21749363 56358915 56360028 887152 888265 NC_000014.9 scf4 100.0 True relocation, inconsistency = 42272406 98632435 98633701 888266 889532 NC_000014.9 scf4 99.92 True relocation, inconsistency = -60884766 37748938 37756200 889535 896799 NC_000014.9 scf4 99.88 True relocation, inconsistency = 60883923 98640124 98645404 896800 902080 NC_000014.9 scf4 99.91 True relocation, inconsistency = -48604190 50041215 50042709 902081 903575 NC_000014.9 scf4 100.0 True relocation, inconsistency = -12281847 37761226 37763150 903939 905862 NC_000014.9 scf4 99.79 True relocation, inconsistency = 60885280 98648431 98650168 905863 907600 NC_000014.9 scf4 99.94 True fake: not a misassembly (possible transposable element) 56375756 56379053 907612 910909 NC_000014.9 scf4 99.88 True fake: not a misassembly (possible transposable element) 98652669 98660859 910910 919100 NC_000014.9 scf4 99.88 True relocation, inconsistency = -48606445 50054415 50055007 919101 919693 NC_000014.9 scf4 99.83 True relocation, inconsistency = -15421508 34633525 34634419 919719 920615 NC_000014.9 scf4 99.0 True relocation, inconsistency = 21752173 56386593 56392335 920616 926358 NC_000014.9 scf4 99.95 True relocation, inconsistency = 42273550 98665886 98666571 926359 927044 NC_000014.9 scf4 99.85 True relocation, inconsistency = -48606890 50059682 50068959 927045 936314 NC_000014.9 scf4 99.77 True relocation, inconsistency = 48604975 98673935 98675100 936315 937480 NC_000014.9 scf4 99.91 True relocation, inconsistency = -42273754 56401347 56406610 937481 942742 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 93174929 93177105 942743 944919 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 56408163 56416853 945039 953729 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 98688970 98691799 953730 956559 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 56418983 56425215 956568 962799 NC_000014.9 scf4 99.82 True fake: not a misassembly (possible transposable element) 98696476 98699947 962800 966271 NC_000014.9 scf4 99.94 True fake: not a misassembly (possible transposable element) 56427899 56437375 966272 975741 NC_000014.9 scf4 99.82 True relocation, inconsistency = 42270478 98708141 98708832 976029 976720 NC_000014.9 scf4 100.0 True indel: indel (> 5bp) 98709143 98709702 977011 977570 NC_000014.9 scf4 100.0 True relocation, inconsistency = -5509054 93200649 93201217 977571 978139 NC_000014.9 scf4 100.0 True relocation, inconsistency = -36762240 56438989 56439851 978151 979013 NC_000014.9 scf4 99.65 True relocation, inconsistency = 36980507 93420359 93422949 979014 981604 NC_000014.9 scf4 99.96 True relocation, inconsistency = -219087 93203863 93205696 981605 983438 NC_000014.9 scf4 100.0 True relocation, inconsistency = 5507934 98713631 98714324 983439 984132 NC_000014.9 scf4 100.0 True relocation, inconsistency = -5289752 93424573 93434011 984133 993572 NC_000014.9 scf4 99.94 True relocation, inconsistency = 5289003 98723015 98726838 993573 997388 NC_000014.9 scf4 99.79 True relocation, inconsistency = -5509995 93216844 93217596 997389 998141 NC_000014.9 scf4 99.87 True relocation, inconsistency = 220193 93437790 93449642 998142 1010007 NC_000014.9 scf4 99.8 True relocation, scaffold gap is present, inconsistency = -223374 93226797 93229381 1010536 1013120 NC_000014.9 scf4 99.92 True fake: not a misassembly (possible transposable element) 98741397 98743095 1013543 1015241 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 93230707 93234210 1015248 1018748 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 93456064 93459688 1018749 1022373 NC_000014.9 scf4 99.83 True fake: not a misassembly (possible transposable element) 93237553 93244511 1022879 1029837 NC_000014.9 scf4 99.96 True relocation, inconsistency = 5509943 98754455 98758366 1029838 1033753 NC_000014.9 scf4 99.9 True relocation, scaffold gap is present, inconsistency = -5290728 93467662 93479540 1033777 1045657 NC_000014.9 scf4 99.89 True relocation, inconsistency = 5289226 98768767 98777482 1045658 1054373 NC_000014.9 scf4 100.0 True relocation, inconsistency = -5515797 93261686 93262329 1054374 1055016 NC_000014.9 scf4 99.84 True relocation, scaffold gap is present, inconsistency = 224193 93486660 93493881 1055154 1062378 NC_000014.9 scf4 99.79 True relocation, inconsistency = -224976 93268923 93270336 1062396 1063809 NC_000014.9 scf4 100.0 True relocation, inconsistency = 5515076 98785413 98798020 1063810 1076420 NC_000014.9 scf4 99.94 True relocation, inconsistency = 4906970 103704991 103710477 1076421 1081907 NC_000014.9 scf4 99.98 True relocation, inconsistency = -10426487 93283991 93290533 1081908 1088450 NC_000014.9 scf4 99.98 True relocation, inconsistency = 5517240 98807775 98811197 1088452 1091874 NC_000014.9 scf4 99.94 True relocation, inconsistency = 4907660 103718859 103719471 1091876 1092488 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 93293854 93297399 1092489 1096034 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 103720916 103722612 1096051 1097749 NC_000014.9 scf4 99.88 True relocation, scaffold gap is present, inconsistency = -4908231 98814917 98825236 1098285 1108604 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 103730553 103731224 1108605 1109276 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 98825410 98836657 1109510 1120759 NC_000014.9 scf4 99.95 True relocation, inconsistency = 4905231 103741889 103744900 1120760 1123771 NC_000014.9 scf4 99.9 True fake: scaffold gap size wrong estimation (local) 103744801 103745964 1124527 1125690 NC_000014.9 scf4 99.83 True fake: not a misassembly (possible transposable element) 98839910 98843086 1125691 1128867 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 103748403 103750717 1128868 1131182 NC_000014.9 scf4 99.87 True relocation, inconsistency = -4906111 98844607 98857441 1131183 1144725 NC_000014.9 scf4 99.42 True fake: scaffold gap size wrong estimation (local) 98857530 98865380 1145554 1153404 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 103766301 103767278 1153405 1154382 NC_000014.9 scf4 99.9 True fake: not a misassembly (possible transposable element) 98866114 98871095 1154869 1159850 NC_000014.9 scf4 99.72 True relocation, scaffold gap is present, inconsistency = 4899972 103771637 103772164 1160420 1160947 NC_000014.9 scf4 100.0 True indel: indel (> 5bp) 103772678 103775280 1161422 1164024 NC_000014.9 scf4 99.85 True fake: scaffold gap size wrong estimation (local) 103775281 103776117 1164909 1165745 NC_000014.9 scf4 100.0 True relocation, inconsistency = -4903186 98872932 98880372 1165746 1173186 NC_000014.9 scf4 99.92 True fake: not a misassembly (possible transposable element) 103781847 103784505 1173484 1176142 NC_000014.9 scf4 99.85 True fake: not a misassembly (possible transposable element) 98882951 98895501 1176160 1188895 NC_000014.9 scf4 99.19 True fake: not a misassembly (possible transposable element) 103793543 103794410 1188896 1189763 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 98896009 98899739 1190301 1194031 NC_000014.9 scf4 99.81 True local misassembly 98899750 98903841 1194859 1198950 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 103800970 103807078 1199492 1205600 NC_000014.9 scf4 99.89 True fake: not a misassembly (possible transposable element) 98908810 98909941 1205601 1206732 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 103807644 103809907 1206959 1209222 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 98911709 98918097 1209256 1215644 NC_000014.9 scf4 99.86 True relocation, inconsistency = 4895992 103814109 103814710 1215664 1216265 NC_000014.9 scf4 99.83 True indel: indel (> 5bp) 103814787 103815649 1216266 1217128 NC_000014.9 scf4 99.88 True fake: not a misassembly (possible transposable element) 98918778 98921433 1217129 1219794 NC_000014.9 scf4 99.47 True fake: not a misassembly (possible transposable element) 103817392 103819614 1219795 1222017 NC_000014.9 scf4 99.91 True fake: not a misassembly (possible transposable element) 98922859 98924819 1222018 1223978 NC_000014.9 scf4 99.8 True fake: not a misassembly (possible transposable element) 103820793 103821592 1223979 1224778 NC_000014.9 scf4 100.0 True local misassembly 103821821 103822682 1224779 1225640 NC_000014.9 scf4 100.0 True relocation, inconsistency = -4896998 98925685 98955424 1225641 1255371 NC_000014.9 scf4 99.93 True fake: not a misassembly (possible transposable element) 103844322 103847123 1255372 1258173 NC_000014.9 scf4 99.96 True fake: not a misassembly (possible transposable element) 98957459 98969332 1258174 1270054 NC_000014.9 scf4 99.38 True fake: not a misassembly (possible transposable element) 103856308 103857871 1270110 1271673 NC_000014.9 scf4 99.87 True fake: not a misassembly (possible transposable element) 98970200 98970936 1271775 1272511 NC_000014.9 scf4 100.0 True local misassembly 98971215 98972823 1272512 1274120 NC_000014.9 scf4 99.94 True fake: not a misassembly (possible transposable element) 103859632 103860895 1274129 1275392 NC_000014.9 scf4 100.0 True fake: not a misassembly (possible transposable element) 98973250 98985327 1275393 1287471 NC_000014.9 scf4 99.88 True relocation, inconsistency = 4884329 103869657 103871418 1287472 1289233 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103871368 103873194 1290093 1291918 NC_000014.9 scf4 99.89 True fake: scaffold gap size wrong estimation (local) 103874582 103875525 1294236 1295179 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103875569 103877100 1296934 1298465 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103877854 103888909 1300398 1312238 NC_000014.9 scf4 98.97 True fake: scaffold gap size wrong estimation (local) 103889082 103893093 1313224 1317235 NC_000014.9 scf4 99.85 True fake: scaffold gap size wrong estimation (local) 103893598 103895379 1318533 1320315 NC_000014.9 scf4 99.61 True fake: scaffold gap size wrong estimation (local) 103895964 103896576 1322039 1322651 NC_000014.9 scf4 99.67 True fake: scaffold gap size wrong estimation (local) 103896911 103900789 1325951 1329829 NC_000014.9 scf4 99.85 True fake: scaffold gap size wrong estimation (local) 103900799 103901623 1330625 1331449 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103901678 103902182 1331703 1332207 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103903447 103905450 1334348 1336351 NC_000014.9 scf4 99.9 True fake: scaffold gap size wrong estimation (local) 103905451 103907406 1337232 1339187 NC_000014.9 scf4 99.95 True fake: scaffold gap size wrong estimation (local) 103908094 103915533 1340629 1348849 NC_000014.9 scf4 97.76 True fake: scaffold gap size wrong estimation (local) 103915434 103922205 1349652 1357718 NC_000014.9 scf4 98.81 True fake: scaffold gap size wrong estimation (local) 103922738 103923400 1359478 1360140 NC_000014.9 scf4 99.85 True local misassembly 103923798 103924453 1360141 1360796 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103924457 103925043 1362203 1362789 NC_000014.9 scf4 100.0 True local misassembly 103925208 103925767 1362823 1363382 NC_000014.9 scf4 100.0 True local misassembly 103926038 103926640 1363383 1363985 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103926617 103938380 1365297 1377910 NC_000014.9 scf4 99.89 True fake: scaffold gap size wrong estimation (local) 103938509 103944656 1378067 1384978 NC_000014.9 scf4 99.92 True fake: scaffold gap size wrong estimation (local) 103944562 103947144 1385641 1388223 NC_000014.9 scf4 99.92 True fake: scaffold gap size wrong estimation (local) 103947445 103950132 1389259 1391944 NC_000014.9 scf4 99.74 True fake: scaffold gap size wrong estimation (local) 103950081 103951859 1392687 1394465 NC_000014.9 scf4 99.94 True fake: scaffold gap size wrong estimation (local) 103952254 103956021 1395654 1399930 NC_000014.9 scf4 97.99 True fake: scaffold gap size wrong estimation (local) 103956158 103965205 1400917 1410667 NC_000014.9 scf4 99.1 True fake: scaffold gap size wrong estimation (local) 103965162 103965924 1411610 1412372 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103967600 103968681 1413673 1414754 NC_000014.9 scf4 99.91 True fake: scaffold gap size wrong estimation (local) 103968974 103971052 1415957 1418035 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103971149 103980245 1418968 1428785 NC_000014.9 scf4 99.7 True fake: scaffold gap size wrong estimation (local) 103980881 103982872 1430216 1432207 NC_000014.9 scf4 99.85 True fake: scaffold gap size wrong estimation (local) 103983318 103984175 1433788 1434645 NC_000014.9 scf4 100.0 True fake: scaffold gap size wrong estimation (local) 103984799 103988331 1437124 1440602 NC_000014.9 scf4 95.62 True fake: scaffold gap size wrong estimation (local) 103988235 103995215 1441303 1449003 NC_000014.9 scf4 97.34 True fake: scaffold gap size wrong estimation (local) 103995116 104014094 1449672 1470288 NC_000014.9 scf4 99.22 True fake: scaffold gap size wrong estimation (local) 104014260 104016335 1471272 1473347 NC_000014.9 scf4 99.86 True fake: scaffold gap size wrong estimation (local) 104016238 104024857 1474143 1483469 NC_000014.9 scf4 97.71 True fake: scaffold gap size wrong estimation (local) 104025056 104030797 1485546 1491303 NC_000014.9 scf4 99.65 True fake: scaffold gap size wrong estimation (local) 104030897 104039511 1492169 1501398 NC_000014.9 scf4 98.04 True fake: scaffold gap size wrong estimation (local) 104039413 104043462 1502089 1506137 NC_000014.9 scf4 99.93 True fake: scaffold gap size wrong estimation (local) 104043365 104045140 1506911 1508686 NC_000014.9 scf4 99.83 True local misassembly 104045390 104046715 1508687 1510012 NC_000014.9 scf4 99.92 True fake: scaffold gap size wrong estimation (local) 104046811 104049147 1510960 1513296 NC_000014.9 scf4 99.91 True fake: scaffold gap size wrong estimation (local) 104049096 104054634 1514071 1519610 NC_000014.9 scf4 99.82 True fake: scaffold gap size wrong estimation (local) 104054542 104062878 1520324 1529388 NC_000014.9 scf4 99.82 True fake: scaffold gap size wrong estimation (local) 104062781 104065336 1530050 1532587 NC_000014.9 scf4 99.14 True fake: scaffold gap size wrong estimation (local) 104065458 104070960 1534494 1540024 NC_000014.9 scf4 99.42 True fake: scaffold gap size wrong estimation (local) 104072330 104073429 1542123 1543222 NC_000014.9 scf4 100.0 True local misassembly 104073754 104075190 1543223 1544659 NC_000014.9 scf4 99.86 True fake: scaffold gap size wrong estimation (local) 104075270 104077098 1545612 1547400 NC_000014.9 scf4 97.81 True fake: scaffold gap size wrong estimation (local) 104077514 104078615 1548879 1549980 NC_000014.9 scf4 100.0 True local misassembly 104078936 104079668 1549981 1550713 NC_000014.9 scf4 99.86 True fake: scaffold gap size wrong estimation (local) 104079814 104084130 1551869 1556185 NC_000014.9 scf4 99.91 True fake: scaffold gap size wrong estimation (local) 104084044 104097860 1556897 1572541 NC_000014.9 scf4 99.55 True fake: scaffold gap size wrong estimation (local) 104098153 104115700 1573585 1591132 NC_000014.9 scf4 99.85 True fake: scaffold gap size wrong estimation (local) 104115614 104123616 1591840 1599840 NC_000014.9 scf4 99.83 True relocation, inconsistency = -28305667 75817950 75846697 1599841 1629406 NC_000014.9 scf4 99.7 True CONTIG scf4 1629406 misassembled 27664682 27673212 8538 7 NC_000014.9 scf5 99.87 True fake: scaffold gap size wrong estimation (local) 27656878 27664182 17111 9806 NC_000014.9 scf5 99.95 True fake: scaffold gap size wrong estimation (local) 27649729 27656964 24981 17748 NC_000014.9 scf5 99.93 True fake: scaffold gap size wrong estimation (local) 27647615 27649826 27876 25665 NC_000014.9 scf5 100.0 True fake: scaffold gap size wrong estimation (local) 27600636 27647659 75631 28615 NC_000014.9 scf5 99.87 True fake: scaffold gap size wrong estimation (local) 27596505 27600546 81361 76544 NC_000014.9 scf5 98.58 True fake: scaffold gap size wrong estimation (local) 27590098 27596596 89181 82632 NC_000014.9 scf5 98.99 True fake: scaffold gap size wrong estimation (local) 27541298 27589978 140282 90117 NC_000014.9 scf5 99.68 True fake: scaffold gap size wrong estimation (local) 27513148 27541122 169226 141211 NC_000014.9 scf5 99.58 True fake: scaffold gap size wrong estimation (local) 27504364 27512939 178645 170071 NC_000014.9 scf5 99.85 True fake: scaffold gap size wrong estimation (local) 27494636 27504451 190493 179934 NC_000014.9 scf5 97.98 True CONTIG scf5 190532 correct 68901446 68903351 1 1906 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 68903538 68907140 2968 6570 NC_000014.9 scf6 99.94 True fake: scaffold gap size wrong estimation (local) 68907482 68925409 7715 26368 NC_000014.9 scf6 99.84 True fake: scaffold gap size wrong estimation (local) 68925335 68932257 27097 34019 NC_000014.9 scf6 99.99 True fake: scaffold gap size wrong estimation (local) 68932521 68933413 35199 36091 NC_000014.9 scf6 100.0 True local misassembly 68933982 68935269 36483 37770 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 68935450 68948485 38729 51764 NC_000014.9 scf6 99.98 True fake: scaffold gap size wrong estimation (local) 68948421 68950091 52446 54116 NC_000014.9 scf6 99.64 True fake: scaffold gap size wrong estimation (local) 68950719 68966261 55607 71893 NC_000014.9 scf6 99.67 True fake: scaffold gap size wrong estimation (local) 68966166 68968609 72565 75008 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 70927837 70930740 77912 75009 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 68970753 68985853 77913 93010 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 70912160 70915378 96243 93025 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 68988295 68990341 96244 98289 NC_000014.9 scf6 99.76 True fake: not a misassembly (possible transposable element) 70910185 70910943 99048 98290 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 68990306 68991414 99152 100260 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70907599 70909930 102592 100261 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 68992837 68996335 102593 106091 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 70903422 70904858 107542 106106 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 68996970 68998982 107543 109555 NC_000014.9 scf6 100.0 True indel: indel (<= 5bp) 68998983 68999662 109561 110240 NC_000014.9 scf6 99.85 True fake: scaffold gap size wrong estimation (local) 69000112 69002710 111446 114044 NC_000014.9 scf6 97.19 True fake: not a misassembly (possible transposable element) 70894597 70899177 118625 114045 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 69006458 69007757 118626 119923 NC_000014.9 scf6 99.77 True fake: not a misassembly (possible transposable element) 70892365 70893877 121734 120198 NC_000014.9 scf6 98.37 True fake: not a misassembly (possible transposable element) 69008752 69009339 121782 122369 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70890554 70891394 123273 122433 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69010012 69010615 123274 123877 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70884109 70890650 130585 124044 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 69015230 69017326 130586 132683 NC_000014.9 scf6 99.62 True fake: not a misassembly (possible transposable element) 70881099 70882752 134384 132727 NC_000014.9 scf6 99.58 True fake: not a misassembly (possible transposable element) 69018359 69019938 134414 136031 NC_000014.9 scf6 97.53 True fake: not a misassembly (possible transposable element) 70878216 70880171 138000 136045 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 69020906 69024590 138008 141692 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 70874234 70876173 144309 142337 NC_000014.9 scf6 97.97 True fake: not a misassembly (possible transposable element) 69026915 69028165 144736 145986 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70869976 70872961 149399 146414 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 69030874 69031545 149400 150071 NC_000014.9 scf6 99.85 True relocation, scaffold gap is present, inconsistency = 1822665 70854439 70869804 166416 150300 NC_000014.9 scf6 99.41 True fake: not a misassembly (possible transposable element) 69044484 69049265 166417 171198 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 70848464 70850141 172876 171199 NC_000014.9 scf6 99.64 True relocation, inconsistency = 1790035 69050162 69058428 172877 181143 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70841158 70841863 181849 181144 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69058340 69065115 181850 188625 NC_000014.9 scf6 99.99 True fake: not a misassembly (possible transposable element) 70834279 70835889 190217 188629 NC_000014.9 scf6 98.14 True fake: not a misassembly (possible transposable element) 69066427 69067337 190698 191608 NC_000014.9 scf6 99.78 True fake: not a misassembly (possible transposable element) 70829900 70832611 196290 193579 NC_000014.9 scf6 99.82 True fake: not a misassembly (possible transposable element) 69070703 69086626 196291 212213 NC_000014.9 scf6 99.92 True relocation, inconsistency = 1731059 70817686 70818371 212899 212214 NC_000014.9 scf6 99.71 True local misassembly 70816226 70817500 214174 212900 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1718627 69087837 69097598 214175 223937 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 70807360 70808197 224813 223976 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69097818 69098720 224956 225858 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1704695 70803416 70807118 229561 225859 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 70799584 70803337 234168 230415 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 69105282 69106303 234169 235186 NC_000014.9 scf6 99.61 True fake: not a misassembly (possible transposable element) 70798685 70799419 235921 235187 NC_000014.9 scf6 99.73 True fake: scaffold gap size wrong estimation (local) 70797574 70798496 236968 236046 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69107141 69110548 236969 240376 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 70788749 70795860 247487 240377 NC_000014.9 scf6 99.92 True relocation, inconsistency = 1664776 69116092 69123972 247488 255368 NC_000014.9 scf6 99.96 True fake: not a misassembly (possible transposable element) 70779135 70782541 258775 255369 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 69126192 69128208 259223 261239 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 70776805 70777437 261870 261240 NC_000014.9 scf6 99.68 True fake: not a misassembly (possible transposable element) 69128409 69141223 262330 275141 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 70765281 70767123 276959 275142 NC_000014.9 scf6 98.59 True fake: not a misassembly (possible transposable element) 69142266 69144552 276960 279246 NC_000014.9 scf6 99.96 True fake: scaffold gap size wrong estimation (local) 69144739 69148157 280144 283562 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70759388 70760225 284400 283563 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69148214 69157682 284401 293870 NC_000014.9 scf6 99.99 True relocation, scaffold gap is present, inconsistency = 1585659 70743860 70751606 302140 294389 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 69164407 69167804 302141 305555 NC_000014.9 scf6 99.41 True fake: not a misassembly (possible transposable element) 70741217 70742005 306987 306199 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1571567 69168529 69169649 306988 308108 NC_000014.9 scf6 99.91 True local misassembly 69169699 69170274 308250 308825 NC_000014.9 scf6 96.08 True fake: scaffold gap size wrong estimation (local) 69170178 69172043 309443 311308 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 70734476 70737763 314596 311309 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 69174611 69177836 314606 317831 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 70728120 70732000 321712 317832 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 69180160 69182369 321713 323922 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1539885 70722279 70726670 328324 323947 NC_000014.9 scf6 99.61 True fake: scaffold gap size wrong estimation (local) 70721176 70722375 330304 329105 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1528048 69186556 69193127 330305 336865 NC_000014.9 scf6 99.74 True fake: scaffold gap size wrong estimation (local) 69193071 69194216 337651 338795 NC_000014.9 scf6 99.74 True fake: not a misassembly (possible transposable element) 70710940 70715311 343166 338796 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 69197413 69199071 343178 344835 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 70706924 70710001 347923 344846 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 69201673 69202398 348353 349095 NC_000014.9 scf6 97.71 True fake: not a misassembly (possible transposable element) 70705355 70706562 350303 349096 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69202909 69206486 350312 353925 NC_000014.9 scf6 98.92 True fake: not a misassembly (possible transposable element) 70702224 70703109 354821 353936 NC_000014.9 scf6 99.89 True fake: not a misassembly (possible transposable element) 69206727 69208494 354991 356759 NC_000014.9 scf6 99.94 True relocation, inconsistency = 1486896 70695391 70701622 363919 356760 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 69213558 69215404 363920 365767 NC_000014.9 scf6 99.73 True fake: not a misassembly (possible transposable element) 70692965 70694377 367180 365768 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 69215969 69216565 367181 367777 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70691692 70692217 368303 367778 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69217015 69217682 368304 368971 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70688740 70691569 372071 369345 NC_000014.9 scf6 96.36 True indel: indel (> 5bp) 70687915 70688535 372961 372341 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69220936 69221938 372962 373964 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 70669566 70687894 392294 373965 NC_000014.9 scf6 99.99 True fake: not a misassembly (possible transposable element) 69237226 69239794 392295 394863 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 70664664 70667745 397942 394864 NC_000014.9 scf6 99.9 True relocation, inconsistency = 1415145 69242094 69249518 397943 405382 NC_000014.9 scf6 99.52 True fake: not a misassembly (possible transposable element) 70657892 70658765 406256 405383 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69249729 69259536 406285 416091 NC_000014.9 scf6 99.88 True relocation, inconsistency = 1390702 70650239 70650918 416771 416092 NC_000014.9 scf6 99.85 True local misassembly 70644944 70650045 421873 416772 NC_000014.9 scf6 99.96 True fake: scaffold gap size wrong estimation (local) 70642560 70644943 425062 422679 NC_000014.9 scf6 99.16 True relocation, inconsistency = 1365814 69266967 69276728 425080 434846 NC_000014.9 scf6 99.81 True relocation, inconsistency = 1344714 70621443 70635150 449370 434847 NC_000014.9 scf6 96.48 True fake: not a misassembly (possible transposable element) 69287866 69289851 449371 451356 NC_000014.9 scf6 99.8 True fake: not a misassembly (possible transposable element) 70619010 70620273 452615 451357 NC_000014.9 scf6 99.61 True fake: not a misassembly (possible transposable element) 69290396 69294030 452616 456250 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 70616110 70617010 457185 456276 NC_000014.9 scf6 99.01 True fake: not a misassembly (possible transposable element) 69294238 69295439 457319 458520 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 70614212 70615522 459831 458521 NC_000014.9 scf6 99.77 True fake: not a misassembly (possible transposable element) 69295415 69296582 459917 461120 NC_000014.9 scf6 96.76 True fake: not a misassembly (possible transposable element) 70609640 70613860 465420 461216 NC_000014.9 scf6 99.46 True relocation, inconsistency = 1300018 69299700 69309621 465421 475798 NC_000014.9 scf6 99.42 True fake: not a misassembly (possible transposable element) 70598066 70601698 479452 475799 NC_000014.9 scf6 99.4 True fake: not a misassembly (possible transposable element) 69312071 69320176 479788 487893 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 70588710 70590348 489532 487894 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69320999 69322270 489533 490804 NC_000014.9 scf6 99.69 True fake: not a misassembly (possible transposable element) 70581722 70588201 497284 490805 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 69326774 69327339 497285 497850 NC_000014.9 scf6 99.65 True relocation, scaffold gap is present, inconsistency = 1247082 70574536 70581814 505242 497964 NC_000014.9 scf6 99.95 True relocation, inconsistency = 1217802 69333895 69356733 505243 528076 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 70553310 70555362 530128 528077 NC_000014.9 scf6 99.81 True fake: not a misassembly (possible transposable element) 69358050 69359875 530153 531978 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69360403 69365541 533392 539364 NC_000014.9 scf6 98.15 True fake: scaffold gap size wrong estimation (local) 69365445 69367726 540096 542376 NC_000014.9 scf6 99.96 True fake: scaffold gap size wrong estimation (local) 69367642 69372571 543124 548499 NC_000014.9 scf6 99.63 True fake: scaffold gap size wrong estimation (local) 69372529 69381191 549478 558142 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 69381110 69382772 558861 560523 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69382682 69385659 561207 564184 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69385570 69391502 564908 570839 NC_000014.9 scf6 99.98 True fake: scaffold gap size wrong estimation (local) 69391429 69403946 571553 584347 NC_000014.9 scf6 99.89 True fake: scaffold gap size wrong estimation (local) 69403876 69406810 585181 588115 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69406865 69407498 589013 589646 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69407731 69411813 589848 593957 NC_000014.9 scf6 99.29 True fake: scaffold gap size wrong estimation (local) 69412346 69413169 595314 596137 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69413315 69414069 596314 597068 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69414003 69416413 597792 600406 NC_000014.9 scf6 97.06 True fake: scaffold gap size wrong estimation (local) 69418199 69418874 602469 603144 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69419184 69419762 604114 604692 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69420293 69421225 605523 606455 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69421129 69422214 606988 608073 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69422739 69427303 609736 614300 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69427213 69429671 615036 617494 NC_000014.9 scf6 99.96 True fake: scaffold gap size wrong estimation (local) 69429583 69437042 618180 625639 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69436996 69438024 626469 627497 NC_000014.9 scf6 100.0 True indel: indel (<= 5bp) 69438026 69439299 627498 628771 NC_000014.9 scf6 100.0 True local misassembly 69439699 69440828 628772 629901 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69440729 69443901 631288 634460 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69443805 69446700 635172 638067 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69446817 69450079 638900 642126 NC_000014.9 scf6 97.78 True fake: scaffold gap size wrong estimation (local) 69449984 69452606 642863 645485 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100207841 100208826 646866 645881 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69453172 69455565 646867 649260 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100204867 100205479 649893 649261 NC_000014.9 scf6 96.84 True fake: not a misassembly (possible transposable element) 69455468 69457428 649961 651921 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100202392 100203633 653164 651922 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 69457842 69465407 653165 661583 NC_000014.9 scf6 99.42 True fake: not a misassembly (possible transposable element) 100196826 100197354 662112 661584 NC_000014.9 scf6 99.81 True fake: not a misassembly (possible transposable element) 69465975 69467540 663053 664618 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100193565 100195159 666213 664619 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69468240 69470289 666214 668263 NC_000014.9 scf6 100.0 True relocation, inconsistency = 30721886 100192176 100193122 669210 668264 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 100189940 100191382 672272 670830 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69472477 69476119 672273 675915 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100186751 100187278 676443 675916 NC_000014.9 scf6 100.0 True relocation, scaffold gap is present, inconsistency = 30709093 69476241 69477175 676926 677860 NC_000014.9 scf6 100.0 True indel: indel (> 5bp) 69477671 69478416 678276 679021 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100184326 100185058 679754 679022 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 69478994 69481346 680694 683046 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 69481247 69487246 683780 689779 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100173992 100176386 692174 689780 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69488761 69489654 692175 693065 NC_000014.9 scf6 99.66 True fake: not a misassembly (possible transposable element) 100172714 100174089 694447 693072 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 69490223 69496716 694448 700941 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100167501 100168148 701587 700942 NC_000014.9 scf6 99.38 True fake: not a misassembly (possible transposable element) 69496673 69498102 701769 703197 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 100164598 100165906 705298 703990 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69499395 69503469 705306 709380 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100158358 100162142 713272 709488 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69506904 69508226 714355 715677 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100154240 100156694 718132 715678 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69509848 69515175 718133 723460 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 100145508 100149685 727638 723461 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 69518482 69519971 727639 729128 NC_000014.9 scf6 99.93 True relocation, inconsistency = 30613815 100133787 100144787 740129 729129 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 69529385 69531057 740130 741802 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 100125558 100132881 749126 741803 NC_000014.9 scf6 99.99 True relocation, inconsistency = 30580051 69536887 69545506 749127 757744 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 100117013 100117716 758448 757745 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 69545448 69550325 758462 763340 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 100111297 100112894 764938 763341 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69551097 69552914 764939 766756 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100104912 100110257 772102 766757 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 69556609 69558140 772103 773634 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100103101 100104232 774766 773635 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 69558809 69573091 775054 789323 NC_000014.9 scf6 99.84 True relocation, inconsistency = 30508803 100081895 100093063 800497 789324 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 69581020 69584434 800504 803910 NC_000014.9 scf6 99.59 True fake: not a misassembly (possible transposable element) 100077984 100079394 805321 803911 NC_000014.9 scf6 99.72 True fake: not a misassembly (possible transposable element) 69585062 69590931 805322 811192 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 100072346 100073421 812659 811584 NC_000014.9 scf6 99.72 True local misassembly 100067353 100071322 817548 813579 NC_000014.9 scf6 99.8 True fake: not a misassembly (possible transposable element) 69595413 69596379 817549 818515 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100064804 100067230 820942 818516 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 69598422 69599057 821176 821811 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 100061462 100064684 825097 821875 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 69600533 69601518 825102 826090 NC_000014.9 scf6 99.7 True fake: not a misassembly (possible transposable element) 100060387 100061009 826900 826278 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 100054052 100060244 833233 827041 NC_000014.9 scf6 99.95 True relocation, inconsistency = 30446167 69606870 69607882 833236 834248 NC_000014.9 scf6 100.0 True local misassembly 69608287 69609135 834249 835097 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100050741 100052937 837294 835098 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 69610334 69619598 837295 846559 NC_000014.9 scf6 99.96 True fake: scaffold gap size wrong estimation (local) 69619600 69622502 847348 850250 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 100039333 100041046 851964 850251 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69623433 69624705 851967 853239 NC_000014.9 scf6 100.0 True relocation, inconsistency = 30403368 100028119 100038757 863923 853285 NC_000014.9 scf6 99.92 True relocation, inconsistency = 30392469 69633853 69635641 863932 865720 NC_000014.9 scf6 99.83 True relocation, inconsistency = 5548325 75183967 75184719 866473 865721 NC_000014.9 scf6 100.0 True relocation, inconsistency = -24842367 100023372 100026294 869435 866513 NC_000014.9 scf6 99.93 True fake: scaffold gap size wrong estimation (local) 100007839 100023304 886507 870277 NC_000014.9 scf6 99.13 True relocation, inconsistency = 30354071 69651784 69653767 886508 888491 NC_000014.9 scf6 100.0 True relocation, scaffold gap is present, inconsistency = 5511369 75165365 75166958 890313 888720 NC_000014.9 scf6 99.94 True local misassembly 75164595 75165098 890826 890323 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69655373 69657326 890827 892768 NC_000014.9 scf6 99.33 True fake: not a misassembly (possible transposable element) 75160925 75163114 895315 893126 NC_000014.9 scf6 100.0 True relocation, inconsistency = 5501240 69659027 69659684 895316 895973 NC_000014.9 scf6 99.85 True relocation, inconsistency = 30340670 100000355 100001787 897406 895974 NC_000014.9 scf6 100.0 True relocation, inconsistency = 24840708 75154755 75159646 902302 897407 NC_000014.9 scf6 99.8 True relocation, inconsistency = 5487366 69665220 69667388 902303 904471 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 73715312 73716690 904521 905899 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 69668267 69669077 906160 906971 NC_000014.9 scf6 99.63 True relocation, inconsistency = 4047875 73717012 73719843 907031 909863 NC_000014.9 scf6 99.79 True relocation, inconsistency = 26268186 99988031 99990206 912039 909864 NC_000014.9 scf6 100.0 True relocation, inconsistency = 30310592 69673333 69677438 912040 916144 NC_000014.9 scf6 99.9 True relocation, inconsistency = 4047333 73724810 73732448 916183 923819 NC_000014.9 scf6 99.86 True relocation, inconsistency = -4048523 69683926 69687163 923820 927057 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 75132359 75134961 931020 928420 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 69690374 69691808 931021 932455 NC_000014.9 scf6 100.0 True relocation, inconsistency = 30280294 99972105 99972889 933240 932456 NC_000014.9 scf6 100.0 True relocation, inconsistency = 26227310 73739541 73744791 933241 938491 NC_000014.9 scf6 99.9 True relocation, inconsistency = -4047702 69697090 69705282 938492 946684 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 75115259 75120802 952228 946685 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 69710099 69713847 952229 955977 NC_000014.9 scf6 99.95 True relocation, inconsistency = 5397816 75111664 75112287 956601 955978 NC_000014.9 scf6 99.84 True relocation, inconsistency = -24842417 99953051 99954080 957632 956602 NC_000014.9 scf6 99.32 True fake: not a misassembly (possible transposable element) 73760731 73764449 957638 961355 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 99949985 99950582 962077 961480 NC_000014.9 scf6 99.33 True relocation, inconsistency = 26183187 73764394 73766740 962135 964481 NC_000014.9 scf6 100.0 True relocation, inconsistency = -4047095 69719646 69721806 964482 966642 NC_000014.9 scf6 99.91 True relocation, inconsistency = 30213980 99935787 99946515 977353 966643 NC_000014.9 scf6 99.68 True relocation, inconsistency = 26158895 73775139 73776891 977354 979106 NC_000014.9 scf6 99.94 True relocation, inconsistency = 7237 73784129 73791631 979107 986609 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 75081201 75088201 993793 986799 NC_000014.9 scf6 99.81 True fake: not a misassembly (possible transposable element) 73797259 73798766 993794 995298 NC_000014.9 scf6 99.8 True relocation, inconsistency = 26120659 99919426 99921768 997642 995299 NC_000014.9 scf6 99.91 True relocation, inconsistency = 24841324 75076303 75078091 999437 997653 NC_000014.9 scf6 99.55 True relocation, inconsistency = 5328405 69747268 69747896 999438 1000070 NC_000014.9 scf6 99.37 True relocation, inconsistency = 30167523 99915420 99917759 1002410 1000071 NC_000014.9 scf6 99.87 True relocation, inconsistency = 24841239 75062591 75073976 1013984 1002615 NC_000014.9 scf6 99.77 True relocation, inconsistency = 5300896 69757892 69761489 1014190 1017776 NC_000014.9 scf6 99.64 True fake: not a misassembly (possible transposable element) 99901603 99902962 1019546 1018187 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 69762505 69765225 1019547 1022265 NC_000014.9 scf6 99.71 True fake: not a misassembly (possible transposable element) 102417853 102424346 1028759 1022266 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 69770358 69774700 1028814 1033156 NC_000014.9 scf6 99.84 True relocation, inconsistency = 30108833 99883534 99890556 1040179 1033157 NC_000014.9 scf6 99.96 True relocation, inconsistency = 24841479 75041326 75042042 1040908 1040192 NC_000014.9 scf6 100.0 True relocation, inconsistency = 5258557 69780783 69782730 1040947 1042894 NC_000014.9 scf6 99.85 True relocation, inconsistency = 4049722 73832484 73834930 1042926 1045346 NC_000014.9 scf6 98.94 True relocation, inconsistency = 28566874 102401805 102405285 1048827 1045347 NC_000014.9 scf6 99.91 True relocation, inconsistency = 2525400 99866574 99876391 1058658 1048841 NC_000014.9 scf6 99.99 True fake: not a misassembly (possible transposable element) 78549952 78555240 1063945 1058659 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 99858279 99862448 1068645 1064476 NC_000014.9 scf6 99.98 True relocation, inconsistency = 30053684 69803121 69804594 1068646 1070119 NC_000014.9 scf6 99.93 True relocation, inconsistency = 4049012 73853607 73854386 1070120 1070899 NC_000014.9 scf6 100.0 True relocation, inconsistency = 4686126 78540513 78544584 1074971 1070900 NC_000014.9 scf6 100.0 True relocation, inconsistency = -21313047 99851519 99853545 1077012 1074986 NC_000014.9 scf6 99.95 True relocation, inconsistency = 77141094 22709919 22710424 1077013 1077519 NC_000014.9 scf6 99.61 True relocation, inconsistency = 52294854 75005279 75013943 1086186 1077520 NC_000014.9 scf6 99.85 True relocation, inconsistency = 35911930 39089939 39093011 1086524 1089596 NC_000014.9 scf6 100.0 True relocation, inconsistency = 63279703 102372732 102373434 1090316 1089614 NC_000014.9 scf6 99.86 True relocation, inconsistency = 27370858 74999853 75001871 1092337 1090319 NC_000014.9 scf6 99.95 True relocation, inconsistency = 52276553 22722283 22723296 1092338 1093351 NC_000014.9 scf6 100.0 True relocation, inconsistency = 77107452 99830749 99839362 1101963 1093352 NC_000014.9 scf6 99.9 True relocation, inconsistency = 25949717 73879213 73881029 1101966 1103782 NC_000014.9 scf6 99.94 True relocation, inconsistency = 28480494 102361524 102362523 1104782 1103783 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 99824085 99828523 1109441 1105005 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 102352054 102357872 1115962 1110143 NC_000014.9 scf6 99.95 True relocation, inconsistency = 2533758 99816309 99818295 1117949 1115963 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 74972431 74979356 1124875 1117950 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 99808905 99810130 1126101 1124876 NC_000014.9 scf6 99.76 True relocation, inconsistency = 29955443 69848641 69853461 1126102 1130922 NC_000014.9 scf6 99.9 True relocation, inconsistency = 5108456 74961918 74968031 1137035 1130923 NC_000014.9 scf6 99.89 True relocation, inconsistency = -24838307 99798498 99800198 1138762 1137062 NC_000014.9 scf6 100.0 True relocation, inconsistency = 29936727 69859733 69861770 1138763 1140800 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 73908794 73910494 1141062 1142762 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 69863029 69875508 1142838 1155317 NC_000014.9 scf6 99.82 True relocation, inconsistency = 5069462 74944971 74945998 1156345 1155318 NC_000014.9 scf6 99.9 True relocation, inconsistency = -27375496 102319939 102320466 1156873 1156346 NC_000014.9 scf6 100.0 True relocation, inconsistency = 28395033 73920856 73924905 1156874 1160923 NC_000014.9 scf6 100.0 True relocation, inconsistency = -4045375 69879920 69883917 1161313 1165310 NC_000014.9 scf6 99.87 True relocation, inconsistency = 29893463 99777484 99779697 1167627 1165414 NC_000014.9 scf6 99.95 True relocation, inconsistency = 24842382 74933232 74935101 1169497 1167628 NC_000014.9 scf6 99.95 True relocation, inconsistency = 994580 73931954 73938651 1169498 1176195 NC_000014.9 scf6 99.96 True relocation, inconsistency = -4044573 69894079 69902684 1176196 1184800 NC_000014.9 scf6 99.84 True relocation, inconsistency = 32394441 102297126 102298198 1185873 1184801 NC_000014.9 scf6 100.0 True relocation, inconsistency = 2534692 99761927 99762433 1186380 1185874 NC_000014.9 scf6 99.8 True relocation, inconsistency = 60591052 39168654 39170791 1186416 1188553 NC_000014.9 scf6 99.95 True relocation, inconsistency = 62656186 101826978 101837203 1198778 1188554 NC_000014.9 scf6 99.99 True relocation, inconsistency = 27869764 73956344 73957213 1198779 1199648 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1247889 75205103 75208048 1199649 1202593 NC_000014.9 scf6 99.83 True relocation, inconsistency = 296200 74906925 74908501 1204571 1202995 NC_000014.9 scf6 100.0 True relocation, inconsistency = -26916002 101821392 101822926 1206106 1204572 NC_000014.9 scf6 99.93 True relocation, inconsistency = 31898311 69921710 69923080 1206107 1207477 NC_000014.9 scf6 99.93 True relocation, inconsistency = 29815784 99739049 99744873 1213479 1207662 NC_000014.9 scf6 99.59 True relocation, inconsistency = 24840192 74894968 74898856 1217368 1213480 NC_000014.9 scf6 100.0 True relocation, inconsistency = 4961278 69931409 69933689 1217369 1219650 NC_000014.9 scf6 99.87 True relocation, inconsistency = 31869866 101803556 101810451 1226545 1219651 NC_000014.9 scf6 99.96 True relocation, inconsistency = 2075797 99722645 99727370 1231659 1226934 NC_000014.9 scf6 99.92 True relocation, inconsistency = 29761290 69944164 69961289 1231725 1248857 NC_000014.9 scf6 99.94 True relocation, inconsistency = 29744376 99705666 99707579 1250771 1248858 NC_000014.9 scf6 99.69 True relocation, inconsistency = -2540004 102244835 102245669 1251606 1250772 NC_000014.9 scf6 100.0 True relocation, inconsistency = 28244747 73998386 74000086 1251607 1253308 NC_000014.9 scf6 99.82 True relocation, inconsistency = 1247327 75247414 75252043 1253309 1257939 NC_000014.9 scf6 99.96 True relocation, inconsistency = 24444507 99696605 99699193 1260582 1257994 NC_000014.9 scf6 99.92 True relocation, inconsistency = 29721261 69971545 69975325 1260600 1264380 NC_000014.9 scf6 100.0 True relocation, inconsistency = 32254823 102230149 102234947 1269179 1264381 NC_000014.9 scf6 99.98 True relocation, inconsistency = 905108 101321146 101325040 1269180 1273074 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1634687 99685318 99686458 1274215 1273075 NC_000014.9 scf6 99.91 True relocation, inconsistency = 29700484 69983584 69984831 1274218 1275465 NC_000014.9 scf6 99.92 True relocation, inconsistency = 32239417 102224250 102225472 1276688 1275466 NC_000014.9 scf6 100.0 True relocation, inconsistency = 27377513 74839132 74846736 1284295 1276689 NC_000014.9 scf6 99.92 True relocation, inconsistency = 4845249 69992940 69993882 1284296 1285238 NC_000014.9 scf6 99.79 True relocation, inconsistency = 31341880 101335763 101343028 1285239 1292486 NC_000014.9 scf6 99.66 True relocation, inconsistency = 863138 102206168 102209986 1296305 1292487 NC_000014.9 scf6 99.97 True relocation, inconsistency = 32166266 70004143 70039901 1296306 1332066 NC_000014.9 scf6 99.89 True fake: not a misassembly (possible transposable element) 91765157 91770902 1332074 1337823 NC_000014.9 scf6 99.62 True fake: not a misassembly (possible transposable element) 70044853 70049449 1337824 1342420 NC_000014.9 scf6 99.93 True relocation, inconsistency = 21725348 91774864 91789294 1342487 1356912 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 70060333 70066842 1356913 1363422 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 91794679 91801036 1363779 1370140 NC_000014.9 scf6 99.84 True relocation, inconsistency = 9610039 101411076 101416554 1370141 1375619 NC_000014.9 scf6 99.87 True relocation, inconsistency = -34193775 67222780 67223306 1375620 1376146 NC_000014.9 scf6 100.0 True relocation, inconsistency = 2853751 70077183 70079347 1376272 1378436 NC_000014.9 scf6 99.86 True relocation, inconsistency = 5268515 75347863 75358736 1378437 1389296 NC_000014.9 scf6 99.74 True relocation, inconsistency = 16459034 91817773 91819322 1389299 1390848 NC_000014.9 scf6 99.94 True relocation, inconsistency = -21729682 70089641 70105142 1390849 1406348 NC_000014.9 scf6 99.87 True relocation, inconsistency = 31336676 101441819 101443328 1406349 1407858 NC_000014.9 scf6 100.0 True relocation, inconsistency = 43949904 57475799 57491914 1423974 1407859 NC_000014.9 scf6 99.89 True relocation, inconsistency = -44630739 102104465 102106537 1426042 1423975 NC_000014.9 scf6 99.39 True relocation, inconsistency = 34838584 67263280 67265880 1426043 1428643 NC_000014.9 scf6 100.0 True relocation, inconsistency = 34195959 101461840 101463780 1428644 1430587 NC_000014.9 scf6 99.59 True relocation, inconsistency = -27322365 74141416 74152096 1430588 1441275 NC_000014.9 scf6 99.78 True relocation, inconsistency = -4015835 70136268 70144641 1441282 1449655 NC_000014.9 scf6 99.86 True relocation, inconsistency = 31334783 101479426 101487621 1449657 1457812 NC_000014.9 scf6 99.41 True relocation, inconsistency = -9609431 91878207 91880684 1457829 1460299 NC_000014.9 scf6 99.48 True relocation, inconsistency = -21726917 70153768 70154978 1460300 1461508 NC_000014.9 scf6 99.75 True relocation, inconsistency = 5263179 75418801 75423273 1462152 1466624 NC_000014.9 scf6 99.98 True relocation, inconsistency = -8334140 67089134 67095428 1466625 1472919 NC_000014.9 scf6 99.98 True relocation, inconsistency = 24796323 91891752 91892662 1472920 1473830 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9608702 101501365 101513510 1473831 1485976 NC_000014.9 scf6 99.92 True relocation, inconsistency = -34407267 67106244 67115642 1485977 1495377 NC_000014.9 scf6 99.98 True relocation, inconsistency = 34406468 101522111 101523976 1495378 1497243 NC_000014.9 scf6 99.95 True relocation, inconsistency = 522152 102046129 102047044 1498158 1497244 NC_000014.9 scf6 99.78 True relocation, inconsistency = 34927019 67118063 67118681 1498586 1499204 NC_000014.9 scf6 100.0 True relocation, inconsistency = 34406697 101525379 101550550 1499205 1524376 NC_000014.9 scf6 99.99 True relocation, inconsistency = -34412189 67138362 67138913 1524377 1524928 NC_000014.9 scf6 100.0 True relocation, inconsistency = 3068663 70207610 70208268 1524962 1525626 NC_000014.9 scf6 98.95 True relocation, inconsistency = 31342739 101551378 101555738 1525997 1530357 NC_000014.9 scf6 100.0 True relocation, inconsistency = -9617989 91937750 91945072 1530358 1537679 NC_000014.9 scf6 99.97 True relocation, inconsistency = -21726266 70218807 70220219 1537680 1539092 NC_000014.9 scf6 99.93 True relocation, inconsistency = 4008855 74229464 74231617 1539482 1541635 NC_000014.9 scf6 99.95 True relocation, inconsistency = 1072745 73153723 73156718 1544631 1541636 NC_000014.9 scf6 100.0 True relocation, inconsistency = 28411787 101568506 101570178 1544632 1546304 NC_000014.9 scf6 100.0 True relocation, inconsistency = -34414421 67156172 67164033 1546719 1554579 NC_000014.9 scf6 99.99 True relocation, inconsistency = 24795807 91959841 91961445 1554580 1556184 NC_000014.9 scf6 99.88 True relocation, inconsistency = 10037673 101999119 102000573 1557639 1556185 NC_000014.9 scf6 99.81 True relocation, inconsistency = 27754164 74244356 74244912 1557682 1558238 NC_000014.9 scf6 100.0 True relocation, inconsistency = -7078059 67166854 67174514 1558239 1565899 NC_000014.9 scf6 100.0 True relocation, inconsistency = 34816446 101991198 101992686 1567625 1566137 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 73132123 73136187 1571976 1567913 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 101985516 101987609 1574070 1571977 NC_000014.9 scf6 100.0 True relocation, inconsistency = 10004464 91975045 91981004 1574118 1580077 NC_000014.9 scf6 99.98 True relocation, inconsistency = -17718719 74262286 74262941 1580078 1580733 NC_000014.9 scf6 100.0 True relocation, inconsistency = 27714972 101977914 101980694 1583514 1580734 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 91983745 91988653 1583515 1588423 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 101971099 101974552 1592016 1588563 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9979091 91991459 91992007 1592017 1592565 NC_000014.9 scf6 100.0 True relocation, inconsistency = 18874254 73114824 73116708 1594946 1593062 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1156820 74273529 74276512 1594947 1597930 NC_000014.9 scf6 99.93 True relocation, inconsistency = 27685628 101962141 101966855 1602645 1597931 NC_000014.9 scf6 99.98 True relocation, inconsistency = 9959333 91999529 92002807 1602646 1605923 NC_000014.9 scf6 99.97 True relocation, inconsistency = 18893923 73105039 73105605 1606491 1605924 NC_000014.9 scf6 99.82 True relocation, inconsistency = 1177734 74283352 74283984 1606504 1607136 NC_000014.9 scf6 99.84 True relocation, inconsistency = 27674317 101958304 101959348 1608180 1607137 NC_000014.9 scf6 99.9 True relocation, inconsistency = 9951604 92004265 92006699 1608181 1610615 NC_000014.9 scf6 100.0 True relocation, inconsistency = 18902658 73095461 73101405 1616761 1610817 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1189656 74291062 74294310 1616762 1620010 NC_000014.9 scf6 100.0 True relocation, inconsistency = 17720333 92014644 92015640 1620011 1621007 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9931680 101947321 101947968 1621658 1621008 NC_000014.9 scf6 99.23 True relocation, inconsistency = 28855979 73087625 73091341 1625375 1621659 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 74298504 74299873 1625777 1627146 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 73084023 73086618 1629742 1627147 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 74301300 74304107 1629744 1632551 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 73080918 73081928 1633562 1632552 NC_000014.9 scf6 100.0 True relocation, inconsistency = 18942400 92024329 92029472 1633563 1638691 NC_000014.9 scf6 99.69 True relocation, inconsistency = 9905122 101934595 101936258 1640354 1638692 NC_000014.9 scf6 99.82 True fake: scaffold gap size wrong estimation (local) 101932651 101934475 1643222 1641398 NC_000014.9 scf6 99.89 True relocation, inconsistency = 9898312 92032036 92034338 1643223 1645524 NC_000014.9 scf6 99.96 True relocation, inconsistency = 18959831 73071245 73072204 1646484 1645525 NC_000014.9 scf6 100.0 True relocation, inconsistency = -28859291 101929405 101930535 1647615 1646485 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 92035727 92037767 1647616 1649656 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 101922651 101928304 1655343 1649690 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 73063113 73064777 1657008 1655344 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 101921284 101922014 1657739 1657009 NC_000014.9 scf6 99.86 True relocation, inconsistency = 9875813 92044678 92045307 1657903 1658532 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 73060021 73062241 1660907 1658687 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92047025 92048407 1661039 1662421 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 74325820 74329078 1662422 1665685 NC_000014.9 scf6 99.82 True fake: not a misassembly (possible transposable element) 92050462 92051720 1665686 1666944 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 101911651 101913346 1668664 1666969 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92052637 92054181 1668665 1670209 NC_000014.9 scf6 99.94 True relocation, inconsistency = 9851363 101905545 101910964 1675502 1670210 NC_000014.9 scf6 97.66 True relocation, inconsistency = 27569284 74335102 74336260 1675503 1676660 NC_000014.9 scf6 99.57 True relocation, inconsistency = 17722838 92059099 92060115 1676661 1677677 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 101897403 101904103 1684378 1677678 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92065129 92065830 1684381 1685082 NC_000014.9 scf6 100.0 True relocation, inconsistency = -17722541 74343290 74343961 1685083 1685754 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1300957 73040792 73041364 1687295 1686723 NC_000014.9 scf6 100.0 True relocation, inconsistency = -28854389 101893674 101895180 1688802 1687296 NC_000014.9 scf6 100.0 True relocation, inconsistency = 27541461 74346142 74352036 1688979 1694873 NC_000014.9 scf6 99.86 True relocation, inconsistency = 17720023 92072404 92073646 1695218 1696460 NC_000014.9 scf6 99.92 True relocation, inconsistency = 19038655 73032761 73033726 1697448 1696483 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1320117 74353844 74355019 1697449 1698624 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 92075269 92076389 1698924 1700044 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 74355944 74363517 1700264 1707837 NC_000014.9 scf6 99.96 True relocation, inconsistency = 27513675 101877194 101878800 1709444 1707838 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9792329 92083184 92084864 1709445 1711125 NC_000014.9 scf6 99.94 True relocation, inconsistency = 19061263 73021359 73021920 1711687 1711126 NC_000014.9 scf6 100.0 True relocation, inconsistency = -28854372 101874876 101875730 1712542 1711688 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9788686 92085471 92086189 1712543 1713261 NC_000014.9 scf6 100.0 True local misassembly 92086427 92088162 1713301 1715036 NC_000014.9 scf6 99.94 True relocation, inconsistency = 9784062 101872225 101873167 1715979 1715037 NC_000014.9 scf6 100.0 True relocation, inconsistency = 27500603 74369759 74371621 1715980 1717842 NC_000014.9 scf6 100.0 True relocation, inconsistency = 1351832 73016326 73017901 1719443 1717868 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92090838 92093200 1719444 1721807 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 73013600 73014201 1722902 1722301 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92094113 92095432 1723567 1724886 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 73011067 73012594 1726414 1724887 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 74378467 74379096 1726415 1727044 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 73006778 73010573 1731357 1727562 NC_000014.9 scf6 99.89 True relocation, inconsistency = -28853817 101854968 101860594 1736984 1731358 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 92105598 92107164 1736985 1738551 NC_000014.9 scf6 99.81 True fake: not a misassembly (possible transposable element) 101852646 101854243 1740149 1738552 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 72995144 72999788 1744798 1740154 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 101848325 101849859 1746336 1744802 NC_000014.9 scf6 100.0 True relocation, inconsistency = 9733894 92113270 92114271 1746496 1747497 NC_000014.9 scf6 99.7 True relocation, inconsistency = 19120076 72992061 72993193 1748630 1747498 NC_000014.9 scf6 99.91 True relocation, inconsistency = -28854753 101844134 101846813 1751310 1748631 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92116936 92118450 1751321 1752835 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 101838928 101843297 1757241 1752878 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 72984296 72985589 1758836 1757543 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 101837183 101838154 1759808 1758837 NC_000014.9 scf6 99.79 True relocation, scaffold gap is present, inconsistency = 9713441 92122695 92123286 1760264 1760855 NC_000014.9 scf6 100.0 True relocation, inconsistency = 19139733 72980617 72982961 1763200 1760856 NC_000014.9 scf6 99.96 True local misassembly 72979467 72980526 1765381 1764322 NC_000014.9 scf6 100.0 True local misassembly 72978567 72979184 1765999 1765382 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92127487 92128205 1766006 1766724 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 72976720 72978465 1768661 1766916 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92129305 92131795 1768662 1771152 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 72972784 72975135 1773504 1771153 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92133493 92138573 1773505 1778585 NC_000014.9 scf6 99.98 True fake: not a misassembly (possible transposable element) 72962623 72968489 1784449 1778586 NC_000014.9 scf6 99.73 True fake: not a misassembly (possible transposable element) 92142860 92146386 1784450 1787976 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72956131 72959928 1791774 1787977 NC_000014.9 scf6 99.92 True relocation, scaffold gap is present, inconsistency = 19188385 92148778 92149791 1792239 1793252 NC_000014.9 scf6 100.0 True local misassembly 92150568 92151505 1793714 1794651 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72953000 72953715 1795857 1795142 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92152553 92153866 1796513 1797826 NC_000014.9 scf6 99.47 True fake: not a misassembly (possible transposable element) 72949534 72951991 1800383 1797927 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 92154048 92156060 1800386 1802397 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 72945446 72948293 1805245 1802398 NC_000014.9 scf6 99.82 True fake: not a misassembly (possible transposable element) 92158090 92160134 1805246 1807290 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 72941058 72944203 1810411 1807291 NC_000014.9 scf6 99.01 True fake: not a misassembly (possible transposable element) 92162478 92163937 1810412 1811871 NC_000014.9 scf6 99.93 True fake: not a misassembly (possible transposable element) 72938130 72940369 1814111 1811872 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 92165360 92165879 1814112 1814631 NC_000014.9 scf6 99.81 True relocation, scaffold gap is present, inconsistency = 19226899 72936525 72937682 1816564 1815410 NC_000014.9 scf6 99.31 True indel: indel (> 5bp) 72935444 72936259 1817604 1816789 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 72934335 72935272 1819870 1818933 NC_000014.9 scf6 99.89 True relocation, inconsistency = 19233519 92168792 92174797 1819871 1826700 NC_000014.9 scf6 97.27 True local misassembly 92176497 92177129 1828323 1828955 NC_000014.9 scf6 99.84 True relocation, scaffold gap is present, inconsistency = 19248673 72926540 72927362 1830239 1829417 NC_000014.9 scf6 99.76 True local misassembly 72925016 72926418 1831642 1830240 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 72924005 72925015 1833805 1832795 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 92179982 92181258 1833806 1835082 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72920656 72923448 1838065 1835273 NC_000014.9 scf6 99.93 True local misassembly 72919566 72920197 1839024 1838393 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 92183665 92187300 1839162 1842796 NC_000014.9 scf6 99.78 True fake: not a misassembly (possible transposable element) 72916087 72916678 1843388 1842797 NC_000014.9 scf6 99.66 True fake: not a misassembly (possible transposable element) 92187431 92194142 1843692 1850403 NC_000014.9 scf6 99.85 True fake: not a misassembly (possible transposable element) 72909847 72910880 1852811 1851778 NC_000014.9 scf6 99.81 True relocation, scaffold gap is present, inconsistency = 19284020 92196137 92206529 1854048 1864429 NC_000014.9 scf6 99.74 True fake: not a misassembly (possible transposable element) 72898339 72900644 1867677 1865372 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 92208657 92219624 1868200 1879163 NC_000014.9 scf6 99.61 True relocation, inconsistency = 19318638 72887692 72890018 1881490 1879164 NC_000014.9 scf6 99.87 True indel: indel (<= 5bp) 72887155 72887691 1882030 1881494 NC_000014.9 scf6 100.0 True indel: indel (<= 5bp) 72886234 72887152 1882949 1882031 NC_000014.9 scf6 99.89 True fake: scaffold gap size wrong estimation (local) 72885381 72886233 1884666 1883814 NC_000014.9 scf6 95.79 True fake: not a misassembly (possible transposable element) 92222541 92226213 1884667 1888339 NC_000014.9 scf6 99.89 True fake: not a misassembly (possible transposable element) 72879211 72882440 1891566 1888340 NC_000014.9 scf6 99.78 True fake: scaffold gap size wrong estimation (local) 72875240 72879309 1896341 1892275 NC_000014.9 scf6 99.85 True fake: scaffold gap size wrong estimation (local) 72874276 72875296 1898048 1897028 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 72853497 72872514 1919393 1900411 NC_000014.9 scf6 99.45 True fake: not a misassembly (possible transposable element) 54963801 54964594 1919890 1920683 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72850035 72852993 1923644 1920684 NC_000014.9 scf6 99.8 True relocation, inconsistency = 17880915 54966731 54969119 1923645 1926033 NC_000014.9 scf6 99.96 True local misassembly 54970181 54971416 1927864 1929097 NC_000014.9 scf6 99.84 True fake: not a misassembly (possible transposable element) 72843750 72846125 1931480 1929104 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 54972529 54974492 1931816 1933763 NC_000014.9 scf6 99.03 True fake: not a misassembly (possible transposable element) 72842091 72842699 1934529 1933921 NC_000014.9 scf6 99.67 True fake: not a misassembly (possible transposable element) 54974735 54981056 1934819 1941201 NC_000014.9 scf6 98.9 True fake: not a misassembly (possible transposable element) 72835217 72836842 1943017 1941392 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 54982270 54984374 1943160 1945263 NC_000014.9 scf6 99.81 True fake: not a misassembly (possible transposable element) 72829511 72833764 1949516 1945264 NC_000014.9 scf6 99.86 True fake: not a misassembly (possible transposable element) 54987376 54990435 1949922 1952991 NC_000014.9 scf6 99.54 True relocation, scaffold gap is present, inconsistency = 17831110 72822182 72827018 1958454 1953628 NC_000014.9 scf6 99.71 True fake: scaffold gap size wrong estimation (local) 72817692 72822281 1963686 1959096 NC_000014.9 scf6 99.87 True fake: not a misassembly (possible transposable element) 54998240 55003589 1963687 1969080 NC_000014.9 scf6 99.09 True fake: not a misassembly (possible transposable element) 72805366 72813083 1976803 1969081 NC_000014.9 scf6 99.73 True fake: scaffold gap size wrong estimation (local) 72804181 72805018 1978551 1977714 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 55010739 55011333 1978557 1979151 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72800757 72804180 1982933 1979510 NC_000014.9 scf6 99.88 True indel: indel (> 5bp) 72798262 72800377 1985436 1983321 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 72795634 72798128 1988897 1986403 NC_000014.9 scf6 96.71 True fake: not a misassembly (possible transposable element) 55017845 55018953 1988898 1990006 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 72788747 72795269 1996528 1990007 NC_000014.9 scf6 99.75 True fake: not a misassembly (possible transposable element) 55023432 55024664 1996529 1997761 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72786095 72788309 1999976 1997762 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 55026072 55032928 1999977 2006836 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 72777729 72780695 2009813 2006847 NC_000014.9 scf6 99.9 True fake: scaffold gap size wrong estimation (local) 72774083 72777828 2014214 2010473 NC_000014.9 scf6 99.73 True fake: not a misassembly (possible transposable element) 55037725 55040615 2014254 2017144 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 72769678 72772550 2020017 2017145 NC_000014.9 scf6 99.9 True fake: not a misassembly (possible transposable element) 55042764 55048021 2020031 2025292 NC_000014.9 scf6 99.89 True fake: not a misassembly (possible transposable element) 72764699 72765763 2026418 2025354 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 55048394 55050660 2026419 2028685 NC_000014.9 scf6 99.96 True fake: not a misassembly (possible transposable element) 72759586 72763176 2032276 2028686 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 55052718 55055829 2032277 2035388 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 72747626 72756932 2045840 2036535 NC_000014.9 scf6 99.79 True fake: not a misassembly (possible transposable element) 55064160 55067018 2045934 2048794 NC_000014.9 scf6 99.79 True fake: not a misassembly (possible transposable element) 72719070 72745382 2075105 2048795 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 55086572 55087411 2076152 2076991 NC_000014.9 scf6 99.88 True fake: not a misassembly (possible transposable element) 72707339 72718785 2088438 2076992 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 55097159 55099156 2088439 2090437 NC_000014.9 scf6 99.8 True fake: not a misassembly (possible transposable element) 72699510 72706058 2096999 2090451 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 55104117 55107251 2097000 2100134 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 72691640 72697068 2105623 2100195 NC_000014.9 scf6 99.94 True local misassembly 72688296 72691639 2109725 2106382 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 55113890 55115245 2109726 2111081 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72683231 72687679 2115558 2111082 NC_000014.9 scf6 99.31 True fake: not a misassembly (possible transposable element) 55117904 55119856 2115559 2117511 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72672071 72682023 2127465 2117513 NC_000014.9 scf6 99.97 True relocation, inconsistency = 17544128 55126991 55127942 2127466 2128417 NC_000014.9 scf6 100.0 True local misassembly 55128204 55129230 2128418 2129444 NC_000014.9 scf6 100.0 True relocation, inconsistency = 17533939 72663170 72670842 2137117 2129445 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 72661854 72663027 2138689 2137516 NC_000014.9 scf6 99.83 True relocation, inconsistency = 17518282 55135845 55143560 2138700 2146456 NC_000014.9 scf6 99.38 True relocation, inconsistency = 17501281 72644842 72654993 2156607 2146457 NC_000014.9 scf6 99.91 True fake: not a misassembly (possible transposable element) 55152278 55153407 2156608 2157737 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72640056 72644473 2162155 2157738 NC_000014.9 scf6 99.95 True fake: not a misassembly (possible transposable element) 55155555 55161543 2162308 2168298 NC_000014.9 scf6 99.92 True fake: not a misassembly (possible transposable element) 72624590 72634692 2178401 2168299 NC_000014.9 scf6 99.94 True fake: not a misassembly (possible transposable element) 55169177 55169963 2178438 2179224 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72612992 72624456 2191505 2179269 NC_000014.9 scf6 99.6 True fake: not a misassembly (possible transposable element) 55177800 55178915 2191506 2192621 NC_000014.9 scf6 100.0 True fake: not a misassembly (possible transposable element) 72599598 72612663 2205818 2192622 NC_000014.9 scf6 99.27 True fake: not a misassembly (possible transposable element) 55189886 55193221 2205819 2209154 NC_000014.9 scf6 99.97 True fake: not a misassembly (possible transposable element) 72593517 72596832 2213730 2210411 NC_000014.9 scf6 99.7 True fake: scaffold gap size wrong estimation (local) 72569520 72593614 2238467 2214377 NC_000014.9 scf6 99.89 True fake: scaffold gap size wrong estimation (local) 72560806 72569613 2248658 2239092 NC_000014.9 scf6 99.04 True fake: scaffold gap size wrong estimation (local) 72531218 72560889 2280021 2249360 NC_000014.9 scf6 99.97 True fake: scaffold gap size wrong estimation (local) 72484933 72531312 2331396 2280838 NC_000014.9 scf6 99.15 True relocation, inconsistency = 21994773 50466406 50490159 2331397 2358501 NC_000014.9 scf6 99.21 True fake: scaffold gap size wrong estimation (local) 50490064 50491324 2359317 2360577 NC_000014.9 scf6 100.0 True local misassembly 50491784 50492591 2360830 2361637 NC_000014.9 scf6 99.88 True indel: indel (<= 5bp) 50492593 50493881 2361638 2362926 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 50494315 50496144 2364147 2365976 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 50496048 50507377 2367864 2380045 NC_000014.9 scf6 99.5 True fake: scaffold gap size wrong estimation (local) 50509140 50513587 2382448 2386895 NC_000014.9 scf6 99.82 True indel: indel (<= 5bp) 50513590 50514243 2386896 2387549 NC_000014.9 scf6 99.69 True indel: indel (<= 5bp) 50514244 50514848 2387551 2388155 NC_000014.9 scf6 99.67 True fake: scaffold gap size wrong estimation (local) 50514912 50517185 2388960 2391233 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 50517398 50520157 2392257 2395016 NC_000014.9 scf6 99.89 True fake: scaffold gap size wrong estimation (local) 50520059 50541922 2395942 2419790 NC_000014.9 scf6 98.19 True fake: scaffold gap size wrong estimation (local) 50542012 50546477 2420670 2425999 NC_000014.9 scf6 99.55 True fake: scaffold gap size wrong estimation (local) 50546383 50553193 2426801 2434432 NC_000014.9 scf6 99.87 True fake: scaffold gap size wrong estimation (local) 50553101 50555394 2435166 2437449 NC_000014.9 scf6 99.48 True fake: scaffold gap size wrong estimation (local) 50555336 50564561 2438155 2448252 NC_000014.9 scf6 99.97 True fake: scaffold gap size wrong estimation (local) 50565223 50582119 2449743 2467202 NC_000014.9 scf6 98.95 True fake: scaffold gap size wrong estimation (local) 50582475 50584433 2468385 2470342 NC_000014.9 scf6 99.85 True fake: scaffold gap size wrong estimation (local) 50584660 50589415 2471420 2476194 NC_000014.9 scf6 99.52 True fake: scaffold gap size wrong estimation (local) 50589347 50592730 2476851 2480235 NC_000014.9 scf6 99.88 True fake: scaffold gap size wrong estimation (local) 50592930 50594836 2481253 2483159 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 50594744 50597233 2483995 2486481 NC_000014.9 scf6 99.8 True fake: scaffold gap size wrong estimation (local) 50597221 50597753 2488706 2489238 NC_000014.9 scf6 100.0 True local misassembly 50598001 50598599 2489239 2489837 NC_000014.9 scf6 99.83 True fake: scaffold gap size wrong estimation (local) 50598501 50600035 2489980 2491543 NC_000014.9 scf6 98.08 True fake: scaffold gap size wrong estimation (local) 50599941 50619034 2492178 2511265 NC_000014.9 scf6 99.81 True fake: scaffold gap size wrong estimation (local) 50618938 50634535 2512323 2529513 NC_000014.9 scf6 96.07 True fake: scaffold gap size wrong estimation (local) 50634441 50642430 2530224 2538989 NC_000014.9 scf6 99.02 True fake: scaffold gap size wrong estimation (local) 50642332 50646533 2539680 2543879 NC_000014.9 scf6 99.86 True fake: scaffold gap size wrong estimation (local) 50646443 50653879 2544572 2552876 NC_000014.9 scf6 99.86 True fake: scaffold gap size wrong estimation (local) 50653782 50655660 2553554 2555432 NC_000014.9 scf6 99.68 True fake: scaffold gap size wrong estimation (local) 50655808 50656633 2555666 2556489 NC_000014.9 scf6 99.64 True fake: scaffold gap size wrong estimation (local) 50657193 50659145 2558269 2560219 NC_000014.9 scf6 99.69 True fake: scaffold gap size wrong estimation (local) 50659076 50670873 2560905 2573423 NC_000014.9 scf6 98.97 True fake: scaffold gap size wrong estimation (local) 50670776 50671605 2574529 2575358 NC_000014.9 scf6 99.76 True fake: scaffold gap size wrong estimation (local) 50673094 50679446 2577309 2583661 NC_000014.9 scf6 99.95 True fake: scaffold gap size wrong estimation (local) 50679353 50682815 2584395 2588820 NC_000014.9 scf6 99.54 True fake: scaffold gap size wrong estimation (local) 50683268 50686930 2588924 2593206 NC_000014.9 scf6 97.46 True fake: scaffold gap size wrong estimation (local) 50686865 50691018 2594031 2598184 NC_000014.9 scf6 99.66 True fake: scaffold gap size wrong estimation (local) 50690922 50694990 2598821 2602886 NC_000014.9 scf6 99.88 True fake: scaffold gap size wrong estimation (local) 50694997 50701919 2603676 2611407 NC_000014.9 scf6 98.36 True fake: scaffold gap size wrong estimation (local) 50701826 50706354 2612133 2616661 NC_000014.9 scf6 99.89 True fake: scaffold gap size wrong estimation (local) 50706595 50712375 2617700 2623418 NC_000014.9 scf6 95.31 True fake: scaffold gap size wrong estimation (local) 50712287 50715591 2624224 2627434 NC_000014.9 scf6 96.94 True fake: scaffold gap size wrong estimation (local) 50715787 50716506 2628777 2629496 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 50717269 50728671 2631227 2642628 NC_000014.9 scf6 99.79 True fake: scaffold gap size wrong estimation (local) 50728575 50733189 2643238 2647850 NC_000014.9 scf6 99.63 True fake: scaffold gap size wrong estimation (local) 50733335 50734086 2648789 2649540 NC_000014.9 scf6 99.87 True fake: scaffold gap size wrong estimation (local) 50735079 50736121 2650386 2651428 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 50736122 50737495 2651559 2652932 NC_000014.9 scf6 100.0 True fake: scaffold gap size wrong estimation (local) 50737748 50748655 2654170 2665818 NC_000014.9 scf6 99.65 True fake: scaffold gap size wrong estimation (local) 50749295 50750966 2667189 2668860 NC_000014.9 scf6 99.88 True fake: scaffold gap size wrong estimation (local) 50752160 50753435 2670706 2671981 NC_000014.9 scf6 99.92 True CONTIG scf6 2671981 misassembled 53430320 53451852 29 22303 NC_000014.9 scf7 99.84 True fake: scaffold gap size wrong estimation (local) 53451755 53476833 22979 49559 NC_000014.9 scf7 99.7 True fake: scaffold gap size wrong estimation (local) 53477430 53483912 50915 57401 NC_000014.9 scf7 99.94 True fake: scaffold gap size wrong estimation (local) 53483832 53489680 58083 63931 NC_000014.9 scf7 100.0 True fake: scaffold gap size wrong estimation (local) 53489582 53502891 64520 77829 NC_000014.9 scf7 99.99 True fake: scaffold gap size wrong estimation (local) 53502835 53504713 78581 80463 NC_000014.9 scf7 99.79 True fake: scaffold gap size wrong estimation (local) 53504646 53549159 81188 125699 NC_000014.9 scf7 99.95 True fake: scaffold gap size wrong estimation (local) 53549759 53560008 127049 137298 NC_000014.9 scf7 99.97 True fake: scaffold gap size wrong estimation (local) 53559929 53568879 138058 146941 NC_000014.9 scf7 99.03 True fake: scaffold gap size wrong estimation (local) 53568788 53571413 147615 150240 NC_000014.9 scf7 99.89 True fake: scaffold gap size wrong estimation (local) 53571314 53573396 151041 153123 NC_000014.9 scf7 99.95 True fake: scaffold gap size wrong estimation (local) 53573563 53578632 154104 159172 NC_000014.9 scf7 99.96 True fake: scaffold gap size wrong estimation (local) 53578543 53610378 159852 192381 NC_000014.9 scf7 99.92 True fake: scaffold gap size wrong estimation (local) 53610515 53613141 193300 195923 NC_000014.9 scf7 99.77 True fake: scaffold gap size wrong estimation (local) 53613048 53616454 196780 201126 NC_000014.9 scf7 98.78 True fake: scaffold gap size wrong estimation (local) 53616381 53617473 202578 203670 NC_000014.9 scf7 100.0 True fake: scaffold gap size wrong estimation (local) 53617400 53640600 204488 228501 NC_000014.9 scf7 99.63 True fake: scaffold gap size wrong estimation (local) 53640505 53654117 229176 242789 NC_000014.9 scf7 99.88 True fake: scaffold gap size wrong estimation (local) 53654047 53680333 243502 270575 NC_000014.9 scf7 99.73 True fake: scaffold gap size wrong estimation (local) 53681356 53695289 272373 286290 NC_000014.9 scf7 99.8 True fake: scaffold gap size wrong estimation (local) 53695194 53701965 286956 293727 NC_000014.9 scf7 99.9 True fake: scaffold gap size wrong estimation (local) 53702101 53705344 294654 297900 NC_000014.9 scf7 99.72 True fake: scaffold gap size wrong estimation (local) 53705257 53707670 298573 300986 NC_000014.9 scf7 99.83 True fake: scaffold gap size wrong estimation (local) 53708191 53726177 302327 321757 NC_000014.9 scf7 99.44 True fake: scaffold gap size wrong estimation (local) 53726262 53730964 323021 328521 NC_000014.9 scf7 99.45 True fake: scaffold gap size wrong estimation (local) 53730872 53737549 329185 335862 NC_000014.9 scf7 99.88 True fake: scaffold gap size wrong estimation (local) 53737450 53748057 336511 347101 NC_000014.9 scf7 99.6 True fake: scaffold gap size wrong estimation (local) 53747983 53761453 347822 361291 NC_000014.9 scf7 99.76 True fake: scaffold gap size wrong estimation (local) 53761355 53770491 361923 371063 NC_000014.9 scf7 99.86 True fake: scaffold gap size wrong estimation (local) 53770411 53773503 371710 374802 NC_000014.9 scf7 99.94 True fake: scaffold gap size wrong estimation (local) 53773406 53782492 375450 384536 NC_000014.9 scf7 99.88 True fake: scaffold gap size wrong estimation (local) 53782396 53799882 385185 404089 NC_000014.9 scf7 99.1 True fake: scaffold gap size wrong estimation (local) 53800241 53801600 405237 406607 NC_000014.9 scf7 96.12 True CONTIG scf7 406607 correct 21754873 21755918 1046 1 NC_000014.9 scf8 99.52 True fake: scaffold gap size wrong estimation (local) 21731269 21754962 27097 1832 NC_000014.9 scf8 99.65 True fake: scaffold gap size wrong estimation (local) 21726218 21730393 32853 28679 NC_000014.9 scf8 99.76 True fake: scaffold gap size wrong estimation (local) 21716591 21726313 44001 33506 NC_000014.9 scf8 99.53 True fake: scaffold gap size wrong estimation (local) 21710886 21716685 51109 45283 NC_000014.9 scf8 99.35 True fake: scaffold gap size wrong estimation (local) 21698580 21710962 64164 51782 NC_000014.9 scf8 99.94 True fake: scaffold gap size wrong estimation (local) 21693394 21697484 70019 65928 NC_000014.9 scf8 99.63 True fake: scaffold gap size wrong estimation (local) 21688297 21693271 75918 70853 NC_000014.9 scf8 98.61 True fake: scaffold gap size wrong estimation (local) 21685710 21688030 79495 77175 NC_000014.9 scf8 99.83 True fake: scaffold gap size wrong estimation (local) 21674331 21685524 92397 80410 NC_000014.9 scf8 96.2 True fake: scaffold gap size wrong estimation (local) 21664115 21673617 103418 93899 NC_000014.9 scf8 99.72 True fake: not a misassembly (possible transposable element) 96785288 96789545 103524 107781 NC_000014.9 scf8 99.88 True fake: not a misassembly (possible transposable element) 21657749 21660509 110542 107782 NC_000014.9 scf8 99.78 True fake: not a misassembly (possible transposable element) 96791554 96794468 110546 113460 NC_000014.9 scf8 99.86 True fake: not a misassembly (possible transposable element) 21649125 21655544 119881 113461 NC_000014.9 scf8 99.83 True relocation, inconsistency = 75143769 96799314 96808123 119882 128682 NC_000014.9 scf8 99.83 True fake: scaffold gap size wrong estimation (local) 96808028 96809062 129405 130439 NC_000014.9 scf8 99.9 True fake: not a misassembly (possible transposable element) 21637242 21641464 134648 130440 NC_000014.9 scf8 99.15 True fake: not a misassembly (possible transposable element) 96813528 96824871 134738 146079 NC_000014.9 scf8 99.96 True fake: not a misassembly (possible transposable element) 21627346 21628686 147419 146080 NC_000014.9 scf8 99.85 True fake: not a misassembly (possible transposable element) 96825439 96836564 147420 158544 NC_000014.9 scf8 99.97 True fake: not a misassembly (possible transposable element) 21616004 21617013 159553 158545 NC_000014.9 scf8 99.7 True fake: not a misassembly (possible transposable element) 96836807 96841790 159554 164538 NC_000014.9 scf8 99.84 True fake: scaffold gap size wrong estimation (local) 96841697 96844683 165195 168181 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 21606145 21609139 171682 168689 NC_000014.9 scf8 99.07 True fake: not a misassembly (possible transposable element) 96847427 96867559 171683 191811 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 21591111 21591900 192601 191812 NC_000014.9 scf8 99.87 True fake: not a misassembly (possible transposable element) 96867464 96868818 192767 194121 NC_000014.9 scf8 99.85 True fake: not a misassembly (possible transposable element) 21590404 21591081 194816 194139 NC_000014.9 scf8 99.85 True fake: not a misassembly (possible transposable element) 96868970 96872414 195114 198558 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 21584058 21587656 202151 198559 NC_000014.9 scf8 99.75 True fake: not a misassembly (possible transposable element) 96875255 96880815 202152 207714 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 21575281 21580125 212884 208027 NC_000014.9 scf8 99.63 True fake: not a misassembly (possible transposable element) 96884461 96891881 212932 220352 NC_000014.9 scf8 99.93 True fake: scaffold gap size wrong estimation (local) 96891882 96892539 221212 221869 NC_000014.9 scf8 98.78 True local misassembly 96892880 96901991 222059 231170 NC_000014.9 scf8 99.93 True fake: scaffold gap size wrong estimation (local) 96902001 96915156 231960 245115 NC_000014.9 scf8 99.91 True local misassembly 96915157 96922169 246596 253608 NC_000014.9 scf8 99.93 True indel: indel (<= 5bp) 96922170 96923652 253610 255092 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 96924575 96926357 256883 258667 NC_000014.9 scf8 99.72 True fake: scaffold gap size wrong estimation (local) 96926609 96938613 259722 272774 NC_000014.9 scf8 98.53 True fake: scaffold gap size wrong estimation (local) 96938528 96972346 273487 308874 NC_000014.9 scf8 99.57 True fake: scaffold gap size wrong estimation (local) 96972440 97002601 309774 339933 NC_000014.9 scf8 99.98 True fake: scaffold gap size wrong estimation (local) 97002702 97027501 340784 365583 NC_000014.9 scf8 99.95 True fake: scaffold gap size wrong estimation (local) 97027420 97052422 366254 392131 NC_000014.9 scf8 99.7 True relocation, inconsistency = -4812614 92239809 92250507 392132 402826 NC_000014.9 scf8 99.78 True fake: not a misassembly (possible transposable element) 97060888 97064163 402827 406102 NC_000014.9 scf8 99.82 True fake: not a misassembly (possible transposable element) 92252989 92253526 406103 406640 NC_000014.9 scf8 99.26 True fake: not a misassembly (possible transposable element) 97064076 97065984 406872 408780 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92254833 92256780 408781 410728 NC_000014.9 scf8 99.85 True relocation, scaffold gap is present, inconsistency = 4809895 97067328 97076625 411381 420688 NC_000014.9 scf8 99.68 True fake: not a misassembly (possible transposable element) 92263555 92269050 420689 426173 NC_000014.9 scf8 99.56 True fake: not a misassembly (possible transposable element) 97081321 97083452 426174 428305 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 92270430 92273103 428306 430979 NC_000014.9 scf8 99.96 True fake: not a misassembly (possible transposable element) 97085354 97089933 430980 435559 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92276910 92277521 435560 436171 NC_000014.9 scf8 99.84 True fake: not a misassembly (possible transposable element) 97089838 97091910 436302 438374 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 92278921 92284915 438375 444370 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 97096065 97103100 444371 451406 NC_000014.9 scf8 99.9 True fake: not a misassembly (possible transposable element) 92290270 92292743 451407 453880 NC_000014.9 scf8 99.88 True fake: not a misassembly (possible transposable element) 97104815 97105789 453881 454855 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92292908 92294392 454874 456358 NC_000014.9 scf8 99.93 True fake: not a misassembly (possible transposable element) 97106447 97107556 456359 457468 NC_000014.9 scf8 100.0 True relocation, inconsistency = -4812827 92294730 92315384 457469 478123 NC_000014.9 scf8 99.77 True relocation, inconsistency = 4811210 97126595 97135828 478124 487357 NC_000014.9 scf8 99.92 True relocation, inconsistency = -4813298 92322531 92332296 487358 497126 NC_000014.9 scf8 99.79 True fake: not a misassembly (possible transposable element) 97144070 97145044 497127 498101 NC_000014.9 scf8 99.69 True fake: not a misassembly (possible transposable element) 92332484 92335653 498102 501183 NC_000014.9 scf8 96.94 True relocation, scaffold gap is present, inconsistency = 4810752 97146505 97154273 501283 509053 NC_000014.9 scf8 99.82 True fake: not a misassembly (possible transposable element) 92342530 92343669 509964 511103 NC_000014.9 scf8 99.91 True fake: not a misassembly (possible transposable element) 97154204 97157913 511104 514811 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 92346836 92347979 514812 515955 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97158292 97161202 515956 518863 NC_000014.9 scf8 99.86 True fake: not a misassembly (possible transposable element) 92349391 92355053 519165 524832 NC_000014.9 scf8 99.82 True fake: not a misassembly (possible transposable element) 97165478 97166709 524840 526071 NC_000014.9 scf8 99.76 True relocation, inconsistency = -4811180 92355530 92372924 526072 543470 NC_000014.9 scf8 99.59 True fake: not a misassembly (possible transposable element) 97182769 97187236 543482 547949 NC_000014.9 scf8 99.96 True fake: not a misassembly (possible transposable element) 92376616 92381207 547950 552541 NC_000014.9 scf8 99.85 True fake: not a misassembly (possible transposable element) 97191084 97192584 552542 554038 NC_000014.9 scf8 99.6 True fake: not a misassembly (possible transposable element) 92381897 92383097 554039 555239 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97193025 97195586 555240 557801 NC_000014.9 scf8 99.84 True fake: not a misassembly (possible transposable element) 92384771 92385703 557802 558734 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97195702 97197384 558774 560457 NC_000014.9 scf8 99.82 True fake: not a misassembly (possible transposable element) 92386407 92387369 560458 561420 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97197566 97204132 561421 567987 NC_000014.9 scf8 99.97 True fake: not a misassembly (possible transposable element) 92392270 92392816 567988 568534 NC_000014.9 scf8 99.82 True fake: not a misassembly (possible transposable element) 97204032 97204809 568673 569450 NC_000014.9 scf8 99.87 True fake: not a misassembly (possible transposable element) 92393829 92395516 570229 571914 NC_000014.9 scf8 99.88 True fake: not a misassembly (possible transposable element) 97206351 97208674 571915 574238 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92395560 92400243 574248 578931 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97212606 97213219 578932 579543 NC_000014.9 scf8 99.51 True fake: not a misassembly (possible transposable element) 92400373 92403494 579864 582985 NC_000014.9 scf8 99.9 True fake: not a misassembly (possible transposable element) 97215887 97218320 582986 585419 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92405140 92406996 585445 587301 NC_000014.9 scf8 100.0 True relocation, inconsistency = 4812307 97219304 97219881 587302 587879 NC_000014.9 scf8 99.65 True local misassembly 97220112 97220688 587968 588544 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92407440 92409857 588547 590948 NC_000014.9 scf8 99.26 True fake: not a misassembly (possible transposable element) 97222240 97223399 590949 592108 NC_000014.9 scf8 99.91 True relocation, scaffold gap is present, inconsistency = -4813539 92410224 92415708 592472 597956 NC_000014.9 scf8 99.95 True fake: scaffold gap size wrong estimation (local) 92416369 92418777 599384 601792 NC_000014.9 scf8 100.0 True relocation, inconsistency = 4812125 97230903 97235832 601793 606727 NC_000014.9 scf8 99.74 True fake: not a misassembly (possible transposable element) 22741159 22741873 607446 606728 NC_000014.9 scf8 99.49 True fake: not a misassembly (possible transposable element) 97235819 97240361 607489 612031 NC_000014.9 scf8 99.96 True fake: not a misassembly (possible transposable element) 92427428 92429441 612032 614045 NC_000014.9 scf8 99.65 True fake: not a misassembly (possible transposable element) 97241756 97256964 614046 629254 NC_000014.9 scf8 99.93 True relocation, inconsistency = -4814786 92442179 92453196 629255 640259 NC_000014.9 scf8 99.71 True fake: not a misassembly (possible transposable element) 97265687 97266280 640260 640853 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92453103 92455810 640962 643669 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 97268282 97269579 643670 644967 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92456632 92462666 645242 651265 NC_000014.9 scf8 99.57 True fake: scaffold gap size wrong estimation (local) 92462575 92468921 651934 658280 NC_000014.9 scf8 99.54 True fake: not a misassembly (possible transposable element) 97279507 97280467 658281 659241 NC_000014.9 scf8 99.9 True fake: not a misassembly (possible transposable element) 92469136 92472023 659242 662129 NC_000014.9 scf8 99.2 True fake: not a misassembly (possible transposable element) 97282520 97284937 662130 664547 NC_000014.9 scf8 99.92 True fake: not a misassembly (possible transposable element) 92473624 92474551 664548 665475 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97285091 97288074 665476 668459 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92476763 92477798 668460 669495 NC_000014.9 scf8 99.81 True fake: not a misassembly (possible transposable element) 97288370 97292791 669497 673917 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 92480700 92488170 673918 681386 NC_000014.9 scf8 99.73 True relocation, inconsistency = 4810478 97298649 97303090 681387 685828 NC_000014.9 scf8 99.95 True fake: scaffold gap size wrong estimation (local) 97303040 97307904 686562 691426 NC_000014.9 scf8 99.79 True fake: not a misassembly (possible transposable element) 92494464 92496870 691427 693833 NC_000014.9 scf8 99.96 True fake: not a misassembly (possible transposable element) 97309428 97316763 694578 701913 NC_000014.9 scf8 99.99 True fake: not a misassembly (possible transposable element) 92501776 92503437 701914 703575 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97317643 97323240 703577 709175 NC_000014.9 scf8 99.98 True relocation, inconsistency = -4815032 92508209 92518826 709176 719793 NC_000014.9 scf8 99.93 True fake: not a misassembly (possible transposable element) 97332280 97333257 719795 720772 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92519055 92523252 720773 724997 NC_000014.9 scf8 99.31 True relocation, inconsistency = 4812620 97335873 97352797 724998 741922 NC_000014.9 scf8 99.98 True fake: scaffold gap size wrong estimation (local) 97352705 97355872 742598 745768 NC_000014.9 scf8 99.78 True fake: not a misassembly (possible transposable element) 92540347 92542230 745769 747654 NC_000014.9 scf8 99.52 True fake: not a misassembly (possible transposable element) 97356968 97358179 747655 748852 NC_000014.9 scf8 98.6 True fake: not a misassembly (possible transposable element) 92542616 92543635 748853 749872 NC_000014.9 scf8 99.8 True fake: not a misassembly (possible transposable element) 97358245 97360007 749873 751635 NC_000014.9 scf8 99.89 True fake: scaffold gap size wrong estimation (local) 97359918 97362595 752369 755046 NC_000014.9 scf8 99.93 True fake: scaffold gap size wrong estimation (local) 97362503 97364290 755793 757580 NC_000014.9 scf8 99.94 True fake: scaffold gap size wrong estimation (local) 97364193 97368763 758281 762851 NC_000014.9 scf8 99.8 True fake: scaffold gap size wrong estimation (local) 97368667 97373285 763502 768116 NC_000014.9 scf8 99.68 True fake: not a misassembly (possible transposable element) 92557097 92559008 768117 770028 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 97373461 97374625 770029 771193 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92559360 92560980 771194 772814 NC_000014.9 scf8 99.88 True fake: not a misassembly (possible transposable element) 97375398 97394160 772815 791575 NC_000014.9 scf8 99.97 True relocation, inconsistency = -4816864 92577297 92578168 791576 792447 NC_000014.9 scf8 99.89 True fake: scaffold gap size wrong estimation (local) 92578169 92579081 792704 793616 NC_000014.9 scf8 99.67 True relocation, inconsistency = 4816375 97395457 97405248 793617 803403 NC_000014.9 scf8 99.86 True fake: not a misassembly (possible transposable element) 92588247 92592209 805407 809369 NC_000014.9 scf8 99.9 True fake: not a misassembly (possible transposable element) 97410129 97418815 809370 818057 NC_000014.9 scf8 99.99 True fake: not a misassembly (possible transposable element) 92598904 92604442 818058 823596 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 97423623 97426668 824361 827406 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92606918 92608611 827852 829545 NC_000014.9 scf8 99.94 True fake: not a misassembly (possible transposable element) 97428053 97431715 829547 833209 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 92611375 92613946 834442 837013 NC_000014.9 scf8 99.73 True fake: not a misassembly (possible transposable element) 97434184 97438948 837309 842073 NC_000014.9 scf8 99.92 True fake: not a misassembly (possible transposable element) 92617330 92619475 842075 844218 NC_000014.9 scf8 99.81 True fake: not a misassembly (possible transposable element) 97440285 97440903 844219 844837 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92619436 92621255 845027 846846 NC_000014.9 scf8 99.89 True fake: not a misassembly (possible transposable element) 97442011 97443152 846849 847990 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 92621582 92625212 847999 851629 NC_000014.9 scf8 99.94 True fake: not a misassembly (possible transposable element) 97446023 97449389 851630 854988 NC_000014.9 scf8 99.44 True fake: not a misassembly (possible transposable element) 92627786 92630401 854989 857592 NC_000014.9 scf8 99.35 True fake: not a misassembly (possible transposable element) 97451247 97460272 857593 866618 NC_000014.9 scf8 99.97 True relocation, scaffold gap is present, inconsistency = -4824292 92636397 92637251 867035 867914 NC_000014.9 scf8 96.94 True indel: indel (> 5bp) 92637457 92639845 868112 870500 NC_000014.9 scf8 99.92 True fake: not a misassembly (possible transposable element) 97463410 97465318 870501 872410 NC_000014.9 scf8 99.42 True fake: not a misassembly (possible transposable element) 92640923 92646679 872411 878984 NC_000014.9 scf8 98.68 True relocation, inconsistency = 4823612 97470292 97488038 878985 896736 NC_000014.9 scf8 99.9 True fake: scaffold gap size wrong estimation (local) 97487996 97496752 897478 906227 NC_000014.9 scf8 99.67 True fake: not a misassembly (possible transposable element) 92668702 92673523 906228 911049 NC_000014.9 scf8 99.92 True fake: not a misassembly (possible transposable element) 97500826 97505180 911069 915423 NC_000014.9 scf8 99.95 True fake: not a misassembly (possible transposable element) 92676045 92678662 915826 918443 NC_000014.9 scf8 99.77 True fake: not a misassembly (possible transposable element) 97507435 97531288 918444 942334 NC_000014.9 scf8 99.75 True fake: not a misassembly (possible transposable element) 92697581 92703304 942335 948042 NC_000014.9 scf8 99.56 True fake: not a misassembly (possible transposable element) 97536190 97549362 948043 961214 NC_000014.9 scf8 99.97 True fake: not a misassembly (possible transposable element) 92712285 92713337 961215 962267 NC_000014.9 scf8 99.91 True fake: not a misassembly (possible transposable element) 97549633 97551471 962268 964106 NC_000014.9 scf8 99.95 True relocation, inconsistency = -4837281 92714191 92715236 964107 965152 NC_000014.9 scf8 99.81 True local misassembly 92715601 92716404 965153 965956 NC_000014.9 scf8 100.0 True relocation, inconsistency = 4836071 97552476 97565478 965957 978959 NC_000014.9 scf8 99.99 True fake: not a misassembly (possible transposable element) 92725217 92725780 978961 979524 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97565394 97608787 979614 1023006 NC_000014.9 scf8 99.99 True fake: not a misassembly (possible transposable element) 92761849 92764033 1023375 1025559 NC_000014.9 scf8 100.0 True fake: not a misassembly (possible transposable element) 97610582 97614783 1025560 1029761 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97614687 97628622 1030415 1045150 NC_000014.9 scf8 99.7 True fake: scaffold gap size wrong estimation (local) 97628792 97633141 1046119 1051355 NC_000014.9 scf8 99.04 True fake: scaffold gap size wrong estimation (local) 97633058 97640632 1052083 1059657 NC_000014.9 scf8 99.89 True fake: scaffold gap size wrong estimation (local) 97640533 97648112 1060354 1068646 NC_000014.9 scf8 99.04 True fake: scaffold gap size wrong estimation (local) 97648016 97649964 1069420 1071366 NC_000014.9 scf8 99.69 True fake: scaffold gap size wrong estimation (local) 97650098 97659789 1072311 1081998 NC_000014.9 scf8 99.85 True fake: scaffold gap size wrong estimation (local) 97659692 97671274 1082634 1094218 NC_000014.9 scf8 99.81 True fake: scaffold gap size wrong estimation (local) 97671196 97675378 1094903 1099085 NC_000014.9 scf8 99.81 True fake: scaffold gap size wrong estimation (local) 97675285 97676367 1099812 1100894 NC_000014.9 scf8 99.91 True fake: scaffold gap size wrong estimation (local) 97677603 97678213 1102346 1102956 NC_000014.9 scf8 100.0 True local misassembly 97678513 97679041 1103122 1103650 NC_000014.9 scf8 99.81 True indel: indel (> 5bp) 97679042 97679771 1103670 1104399 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97679973 97683213 1105417 1108657 NC_000014.9 scf8 99.85 True fake: scaffold gap size wrong estimation (local) 97683121 97686972 1109346 1113193 NC_000014.9 scf8 99.82 True fake: scaffold gap size wrong estimation (local) 97687571 97689230 1114597 1116256 NC_000014.9 scf8 99.64 True fake: scaffold gap size wrong estimation (local) 97689517 97725315 1117554 1153450 NC_000014.9 scf8 99.52 True fake: scaffold gap size wrong estimation (local) 97725243 97727208 1154232 1156205 NC_000014.9 scf8 99.44 True fake: scaffold gap size wrong estimation (local) 97727449 97728917 1157443 1158911 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97729712 97737753 1160494 1168826 NC_000014.9 scf8 98.59 True fake: scaffold gap size wrong estimation (local) 97737656 97753681 1169246 1187124 NC_000014.9 scf8 96.68 True fake: scaffold gap size wrong estimation (local) 97753780 97761485 1188009 1195714 NC_000014.9 scf8 99.86 True fake: scaffold gap size wrong estimation (local) 97761393 97767383 1196366 1202358 NC_000014.9 scf8 99.97 True fake: scaffold gap size wrong estimation (local) 97767509 97787760 1203252 1224291 NC_000014.9 scf8 99.6 True fake: scaffold gap size wrong estimation (local) 97788440 97790624 1226263 1228447 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97790826 97791967 1229039 1230180 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97791869 97797641 1231044 1236816 NC_000014.9 scf8 99.79 True fake: scaffold gap size wrong estimation (local) 97797559 97800210 1237528 1240149 NC_000014.9 scf8 98.53 True fake: scaffold gap size wrong estimation (local) 97800114 97810735 1240864 1252247 NC_000014.9 scf8 99.31 True fake: scaffold gap size wrong estimation (local) 97810642 97816805 1252916 1259863 NC_000014.9 scf8 98.49 True fake: scaffold gap size wrong estimation (local) 97817738 97830117 1261516 1273901 NC_000014.9 scf8 99.6 True fake: scaffold gap size wrong estimation (local) 97830199 97842250 1274783 1288329 NC_000014.9 scf8 98.58 True fake: scaffold gap size wrong estimation (local) 97842182 97843230 1289221 1290269 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97843134 97847710 1291001 1295576 NC_000014.9 scf8 99.89 True fake: scaffold gap size wrong estimation (local) 97847637 97849067 1296430 1297860 NC_000014.9 scf8 100.0 True fake: scaffold gap size wrong estimation (local) 97849322 97856518 1298935 1306131 NC_000014.9 scf8 99.93 True fake: scaffold gap size wrong estimation (local) 97856778 97858461 1307160 1308846 NC_000014.9 scf8 99.47 True fake: scaffold gap size wrong estimation (local) 97858543 97866559 1309756 1318972 NC_000014.9 scf8 99.17 True fake: scaffold gap size wrong estimation (local) 97866600 97867835 1319976 1321211 NC_000014.9 scf8 99.92 True fake: scaffold gap size wrong estimation (local) 97868925 97876308 1323139 1330574 NC_000014.9 scf8 99.21 True fake: scaffold gap size wrong estimation (local) 97876268 97881653 1331244 1336627 NC_000014.9 scf8 99.93 True fake: scaffold gap size wrong estimation (local) 97881832 97895612 1337587 1351342 NC_000014.9 scf8 99.68 True fake: scaffold gap size wrong estimation (local) 97895518 97902509 1352063 1359055 NC_000014.9 scf8 99.66 True fake: scaffold gap size wrong estimation (local) 97902438 97903179 1359839 1360581 NC_000014.9 scf8 99.6 True fake: scaffold gap size wrong estimation (local) 97903430 97904660 1360763 1361985 NC_000014.9 scf8 99.19 True fake: scaffold gap size wrong estimation (local) 97904954 97913318 1363090 1371447 NC_000014.9 scf8 99.73 True fake: scaffold gap size wrong estimation (local) 97913220 97920480 1372107 1380162 NC_000014.9 scf8 99.31 True fake: scaffold gap size wrong estimation (local) 97920399 97920981 1380655 1381237 NC_000014.9 scf8 99.66 True fake: scaffold gap size wrong estimation (local) 97920918 97930967 1382195 1392879 NC_000014.9 scf8 97.07 True fake: scaffold gap size wrong estimation (local) 97930909 97933310 1393826 1396227 NC_000014.9 scf8 99.96 True fake: scaffold gap size wrong estimation (local) 97933225 97933818 1397304 1397897 NC_000014.9 scf8 100.0 True local misassembly 97934293 97935974 1397898 1399579 NC_000014.9 scf8 99.64 True fake: scaffold gap size wrong estimation (local) 97936168 97938741 1400564 1403139 NC_000014.9 scf8 99.65 True fake: scaffold gap size wrong estimation (local) 97938676 97941382 1403916 1406622 NC_000014.9 scf8 99.78 True fake: scaffold gap size wrong estimation (local) 97941284 97951110 1407280 1417106 NC_000014.9 scf8 99.91 True fake: scaffold gap size wrong estimation (local) 97951018 97953644 1417814 1420440 NC_000014.9 scf8 99.96 True fake: scaffold gap size wrong estimation (local) 97953880 97961604 1422133 1430637 NC_000014.9 scf8 96.26 True fake: scaffold gap size wrong estimation (local) 97961521 97968626 1431300 1438404 NC_000014.9 scf8 99.9 True fake: scaffold gap size wrong estimation (local) 97968770 97976185 1439394 1447614 NC_000014.9 scf8 99.33 True fake: scaffold gap size wrong estimation (local) 97976187 97982077 1448353 1454241 NC_000014.9 scf8 99.81 True fake: scaffold gap size wrong estimation (local) 97981978 97988583 1454896 1461503 NC_000014.9 scf8 99.83 True fake: scaffold gap size wrong estimation (local) 97988762 97990220 1462490 1463946 NC_000014.9 scf8 99.79 True fake: scaffold gap size wrong estimation (local) 97990145 98002280 1464623 1476750 NC_000014.9 scf8 99.87 True CONTIG scf8 1476750 misassembled 88120753 88122505 1753 1 NC_000014.9 scf9 99.89 True fake: scaffold gap size wrong estimation (local) 88117226 88120572 6097 2751 NC_000014.9 scf9 100.0 True fake: scaffold gap size wrong estimation (local) 88115926 88117034 7417 6309 NC_000014.9 scf9 99.82 True fake: scaffold gap size wrong estimation (local) 88102586 88116020 21490 8057 NC_000014.9 scf9 99.96 True fake: scaffold gap size wrong estimation (local) 88100251 88102449 24609 22411 NC_000014.9 scf9 100.0 True fake: scaffold gap size wrong estimation (local) 88089312 88100349 36274 25250 NC_000014.9 scf9 99.57 True fake: scaffold gap size wrong estimation (local) 88082712 88089331 43633 37016 NC_000014.9 scf9 99.79 True fake: scaffold gap size wrong estimation (local) 88058551 88082365 70123 44763 NC_000014.9 scf9 99.42 True fake: scaffold gap size wrong estimation (local) 88053144 88058406 76330 71069 NC_000014.9 scf9 99.6 True fake: scaffold gap size wrong estimation (local) 88033303 88053050 97699 77186 NC_000014.9 scf9 99.82 True fake: scaffold gap size wrong estimation (local) 88025025 88033095 106705 98772 NC_000014.9 scf9 98.29 True fake: scaffold gap size wrong estimation (local) 88020529 88025118 111955 107368 NC_000014.9 scf9 99.85 True fake: scaffold gap size wrong estimation (local) 88018791 88020597 114476 112669 NC_000014.9 scf9 99.67 True fake: scaffold gap size wrong estimation (local) 88013185 88018874 120977 115288 NC_000014.9 scf9 99.95 True fake: scaffold gap size wrong estimation (local) 87997536 88013242 137403 121689 NC_000014.9 scf9 99.77 True fake: scaffold gap size wrong estimation (local) 87991366 87997395 144378 138350 NC_000014.9 scf9 99.93 True fake: scaffold gap size wrong estimation (local) 87983045 87991269 153447 145220 NC_000014.9 scf9 99.84 True fake: scaffold gap size wrong estimation (local) 87980344 87983134 156930 154138 NC_000014.9 scf9 99.89 True fake: scaffold gap size wrong estimation (local) 87970877 87980387 167130 157711 NC_000014.9 scf9 98.89 True fake: scaffold gap size wrong estimation (local) 87959466 87970710 179300 168064 NC_000014.9 scf9 99.8 True fake: scaffold gap size wrong estimation (local) 87956528 87959551 182989 179964 NC_000014.9 scf9 99.87 True fake: scaffold gap size wrong estimation (local) 87924343 87956620 219184 183616 NC_000014.9 scf9 99.11 True fake: scaffold gap size wrong estimation (local) 87878674 87924244 266439 220033 NC_000014.9 scf9 99.5 True fake: scaffold gap size wrong estimation (local) 87859760 87878480 286880 267380 NC_000014.9 scf9 99.92 True fake: scaffold gap size wrong estimation (local) 87855761 87858386 294499 291894 NC_000014.9 scf9 99.2 True fake: scaffold gap size wrong estimation (local) 87854574 87855849 296620 295345 NC_000014.9 scf9 99.92 True local misassembly 87852060 87854328 298889 296621 NC_000014.9 scf9 100.0 True fake: scaffold gap size wrong estimation (local) 87811928 87852159 341990 299584 NC_000014.9 scf9 99.39 True fake: scaffold gap size wrong estimation (local) 87781095 87811827 375220 342904 NC_000014.9 scf9 99.9 True fake: scaffold gap size wrong estimation (local) 87780071 87780601 376054 375524 NC_000014.9 scf9 100.0 True fake: scaffold gap size wrong estimation (local) 87778841 87779352 378961 378450 NC_000014.9 scf9 100.0 True CONTIG scf9 379232 correct 64972342 64974419 2035 29 NC_000014.9 scf10 96.54 True fake: scaffold gap size wrong estimation (local) 64965232 64972151 10911 3132 NC_000014.9 scf10 99.68 True fake: scaffold gap size wrong estimation (local) 64964766 64965317 12732 12181 NC_000014.9 scf10 100.0 True local misassembly 64963112 64964432 14053 12733 NC_000014.9 scf10 99.92 True fake: scaffold gap size wrong estimation (local) 64961943 64963111 16478 15310 NC_000014.9 scf10 99.74 True local misassembly 64960077 64961431 17846 16492 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 64935064 64960172 45891 19322 NC_000014.9 scf10 99.44 True fake: scaffold gap size wrong estimation (local) 64934253 64935156 47797 46894 NC_000014.9 scf10 99.78 True local misassembly 64932595 64933905 49108 47798 NC_000014.9 scf10 99.92 True fake: scaffold gap size wrong estimation (local) 64928627 64932688 54321 50261 NC_000014.9 scf10 99.8 True fake: scaffold gap size wrong estimation (local) 64925697 64928725 58035 55041 NC_000014.9 scf10 96.99 True fake: scaffold gap size wrong estimation (local) 64924765 64925696 59563 58632 NC_000014.9 scf10 99.57 True fake: scaffold gap size wrong estimation (local) 64922577 64924764 61948 59761 NC_000014.9 scf10 99.95 True fake: scaffold gap size wrong estimation (local) 64921478 64922295 64525 63708 NC_000014.9 scf10 99.76 True local misassembly 64919103 64920740 66163 64526 NC_000014.9 scf10 99.76 True fake: scaffold gap size wrong estimation (local) 64916838 64919172 69330 66993 NC_000014.9 scf10 99.87 True fake: scaffold gap size wrong estimation (local) 64913607 64916906 73367 70068 NC_000014.9 scf10 99.94 True fake: scaffold gap size wrong estimation (local) 64910735 64911682 76958 76011 NC_000014.9 scf10 99.68 True fake: scaffold gap size wrong estimation (local) 64904728 64910589 84510 77823 NC_000014.9 scf10 99.45 True fake: scaffold gap size wrong estimation (local) 64903262 64904789 86828 85301 NC_000014.9 scf10 99.93 True fake: scaffold gap size wrong estimation (local) 64901068 64902950 89914 88032 NC_000014.9 scf10 99.84 True fake: scaffold gap size wrong estimation (local) 64899259 64900641 92703 91321 NC_000014.9 scf10 99.93 True fake: scaffold gap size wrong estimation (local) 64896730 64898687 97928 95971 NC_000014.9 scf10 99.95 True fake: scaffold gap size wrong estimation (local) 64869768 64893136 124850 99132 NC_000014.9 scf10 99.65 True fake: not a misassembly (possible transposable element) 79741802 79743559 126609 124851 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 64867689 64868802 127733 126636 NC_000014.9 scf10 98.38 True fake: not a misassembly (possible transposable element) 79739686 79741483 129493 127734 NC_000014.9 scf10 97.83 True fake: not a misassembly (possible transposable element) 64864232 64866761 132024 129494 NC_000014.9 scf10 99.8 True relocation, inconsistency = -14873650 79719403 79737881 150508 132025 NC_000014.9 scf10 99.85 True fake: not a misassembly (possible transposable element) 64842835 64849832 157510 150513 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 79708044 79713187 163302 158158 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 64837632 64838689 164360 163303 NC_000014.9 scf10 99.91 True fake: not a misassembly (possible transposable element) 79686019 79707731 186073 164361 NC_000014.9 scf10 99.99 True fake: not a misassembly (possible transposable element) 64814027 64820112 192169 186074 NC_000014.9 scf10 99.77 True fake: not a misassembly (possible transposable element) 79645641 79680722 227251 192170 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14859760 64783195 64785880 229937 227252 NC_000014.9 scf10 99.89 True relocation, inconsistency = 11150081 75935962 75940160 229938 234135 NC_000014.9 scf10 99.71 True relocation, inconsistency = 27710499 103650660 103652636 234136 236112 NC_000014.9 scf10 99.85 True relocation, inconsistency = 38871599 64756463 64778639 258709 236534 NC_000014.9 scf10 99.98 True relocation, inconsistency = -14862401 79611558 79618863 266015 258710 NC_000014.9 scf10 99.96 True relocation, inconsistency = 25868323 105487187 105497705 266016 276531 NC_000014.9 scf10 99.84 True relocation, inconsistency = 40746269 64734773 64740917 282676 276532 NC_000014.9 scf10 99.98 True fake: not a misassembly (possible transposable element) 75982299 75988689 282677 289067 NC_000014.9 scf10 99.98 True fake: not a misassembly (possible transposable element) 64716491 64730040 302616 289068 NC_000014.9 scf10 99.98 True relocation, inconsistency = -14863344 79565210 79579834 317239 302617 NC_000014.9 scf10 99.97 True relocation, inconsistency = 14861325 64699982 64703884 321142 317240 NC_000014.9 scf10 100.0 True relocation, inconsistency = 11312426 76016311 76020240 321143 325072 NC_000014.9 scf10 99.97 True relocation, inconsistency = 3529737 79549978 79558933 334028 325073 NC_000014.9 scf10 99.92 True relocation, inconsistency = 3502003 76027604 76047968 334035 354398 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 79527874 79533528 360058 354399 NC_000014.9 scf10 99.75 True fake: not a misassembly (possible transposable element) 76052855 76059269 360060 366473 NC_000014.9 scf10 99.89 True relocation, inconsistency = 3461675 79520945 79523375 368904 366474 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14859050 64658689 64660803 372109 369996 NC_000014.9 scf10 99.81 True fake: not a misassembly (possible transposable element) 76063756 76064569 372565 373378 NC_000014.9 scf10 99.75 True fake: not a misassembly (possible transposable element) 64657515 64658052 374000 373463 NC_000014.9 scf10 100.0 True relocation, scaffold gap is present, inconsistency = 11406385 76064473 76067796 374036 377359 NC_000014.9 scf10 99.85 True fake: not a misassembly (possible transposable element) 79512048 79513950 379262 377360 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76068928 76082542 379263 392871 NC_000014.9 scf10 99.82 True fake: not a misassembly (possible transposable element) 79500164 79501770 394718 393113 NC_000014.9 scf10 99.81 True fake: not a misassembly (possible transposable element) 76083618 76087924 394719 399025 NC_000014.9 scf10 99.88 True relocation, inconsistency = 11446083 64633121 64637524 403439 399036 NC_000014.9 scf10 99.98 True relocation, inconsistency = -14860794 79490019 79493914 407335 403440 NC_000014.9 scf10 99.92 True relocation, inconsistency = 3392601 76094651 76097417 407336 410102 NC_000014.9 scf10 99.93 True relocation, inconsistency = 11467385 64624821 64627250 412544 410118 NC_000014.9 scf10 99.88 True relocation, inconsistency = -14860754 79477145 79485574 420974 412545 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 76106752 76109168 420975 423390 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 79470874 79475451 427966 423391 NC_000014.9 scf10 99.87 True relocation, inconsistency = 14858103 64608692 64612762 432042 427975 NC_000014.9 scf10 99.93 True relocation, inconsistency = 11503414 76116177 76116821 432043 432687 NC_000014.9 scf10 100.0 True relocation, inconsistency = 3345491 79462313 79466917 437292 432688 NC_000014.9 scf10 99.96 True relocation, inconsistency = 14858127 64591443 64604180 450024 437298 NC_000014.9 scf10 99.82 True relocation, inconsistency = 11525419 76129608 76138735 450033 459159 NC_000014.9 scf10 99.92 True fake: not a misassembly (possible transposable element) 79441569 79442888 460479 459160 NC_000014.9 scf10 99.92 True fake: not a misassembly (possible transposable element) 76139268 76140541 460480 461753 NC_000014.9 scf10 99.69 True relocation, inconsistency = 11556132 64579799 64583135 465090 461754 NC_000014.9 scf10 99.88 True relocation, inconsistency = -14857903 79435594 79437699 467198 465093 NC_000014.9 scf10 99.91 True fake: not a misassembly (possible transposable element) 76145180 76148605 467203 470628 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 79427614 79432932 475955 470634 NC_000014.9 scf10 99.91 True relocation, inconsistency = 3267641 76152302 76159972 475956 483625 NC_000014.9 scf10 99.79 True relocation, inconsistency = 11585303 64566447 64566998 484177 483626 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 79414794 79421321 490705 484178 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 64560124 64561863 492445 490706 NC_000014.9 scf10 99.83 True local misassembly 64559327 64560123 494282 493486 NC_000014.9 scf10 99.87 True relocation, inconsistency = 11608058 76168662 76179971 494763 506068 NC_000014.9 scf10 99.83 True relocation, inconsistency = 11619523 64548322 64549138 506887 506069 NC_000014.9 scf10 99.63 True fake: not a misassembly (possible transposable element) 79399011 79400937 508814 506888 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 64545509 64547200 510785 509094 NC_000014.9 scf10 99.65 True relocation, inconsistency = -14852265 79395626 79397713 512933 510846 NC_000014.9 scf10 100.0 True relocation, inconsistency = 3203415 76185172 76192210 512934 519982 NC_000014.9 scf10 99.74 True relocation, inconsistency = 3197860 79390072 79390742 520653 519983 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14851486 64537742 64538585 521497 520654 NC_000014.9 scf10 99.76 True relocation, inconsistency = 11654410 76192996 76202715 521498 531218 NC_000014.9 scf10 99.79 True fake: not a misassembly (possible transposable element) 79380762 79382133 532589 531219 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 76203350 76205753 532590 534993 NC_000014.9 scf10 99.79 True relocation, inconsistency = 3171750 79377504 79379113 536603 534994 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14852438 64520247 64525065 541424 536604 NC_000014.9 scf10 99.96 True relocation, inconsistency = 11686368 76211442 76215176 541433 545167 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 79366981 79370441 548628 545168 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 76217922 76232554 548630 563333 NC_000014.9 scf10 99.35 True relocation, inconsistency = 11714964 64500881 64502957 565410 563334 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 79348461 79353070 570020 565411 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 64496271 64497853 571603 570021 NC_000014.9 scf10 100.0 True relocation, inconsistency = 11740485 76238339 76240404 571604 573669 NC_000014.9 scf10 100.0 True relocation, inconsistency = 3100139 79340544 79345540 578666 573670 NC_000014.9 scf10 99.98 True relocation, inconsistency = 14849293 64490135 64491250 579760 578667 NC_000014.9 scf10 98.03 True relocation, inconsistency = 11753685 76244936 76260682 579761 595498 NC_000014.9 scf10 99.87 True relocation, inconsistency = 3056407 79317090 79325265 603674 595499 NC_000014.9 scf10 100.0 True relocation, inconsistency = 3044475 76267301 76272614 603675 609001 NC_000014.9 scf10 99.66 True fake: not a misassembly (possible transposable element) 64463623 64464931 610310 609002 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76273084 76275236 610311 612457 NC_000014.9 scf10 99.58 True fake: not a misassembly (possible transposable element) 64460538 64461573 614041 613006 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76276063 76290873 614042 628761 NC_000014.9 scf10 99.3 True fake: scaffold gap size wrong estimation (local) 76290963 76294806 629643 633486 NC_000014.9 scf10 99.92 True relocation, inconsistency = 11847491 64441804 64443471 635154 633487 NC_000014.9 scf10 99.88 True fake: scaffold gap size wrong estimation (local) 64441065 64441605 637164 636624 NC_000014.9 scf10 100.0 True indel: indel (> 5bp) 64439955 64440896 638312 637371 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76298408 76299689 638671 639937 NC_000014.9 scf10 97.98 True fake: not a misassembly (possible transposable element) 64436252 64439115 642801 639938 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76301794 76302819 642802 643827 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 64434952 64435997 644873 643828 NC_000014.9 scf10 100.0 True relocation, inconsistency = 11867051 76303076 76311010 644901 652834 NC_000014.9 scf10 99.91 True fake: not a misassembly (possible transposable element) 64426659 64428125 654759 653293 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76312190 76313428 654760 655999 NC_000014.9 scf10 99.84 True relocation, scaffold gap is present, inconsistency = 11885056 64425431 64426539 657702 656594 NC_000014.9 scf10 100.0 True local misassembly 64423618 64424440 658525 657703 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 76315097 76316561 658534 660009 NC_000014.9 scf10 98.78 True fake: not a misassembly (possible transposable element) 64421759 64423695 662108 660172 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 76317849 76320065 662109 664325 NC_000014.9 scf10 99.77 True fake: not a misassembly (possible transposable element) 64418771 64420338 665893 664326 NC_000014.9 scf10 99.87 True fake: not a misassembly (possible transposable element) 76320763 76321874 665912 667023 NC_000014.9 scf10 99.73 True fake: not a misassembly (possible transposable element) 64414800 64417968 670616 667448 NC_000014.9 scf10 100.0 True relocation, inconsistency = 11906737 76324706 76328045 670617 673946 NC_000014.9 scf10 99.46 True fake: scaffold gap size wrong estimation (local) 76327949 76332460 674643 679154 NC_000014.9 scf10 99.91 True fake: not a misassembly (possible transposable element) 64406492 64408285 681211 679319 NC_000014.9 scf10 98.25 True fake: not a misassembly (possible transposable element) 76333819 76338858 681212 686251 NC_000014.9 scf10 99.96 True local misassembly 76338859 76344722 686992 692855 NC_000014.9 scf10 99.95 True fake: scaffold gap size wrong estimation (local) 76344627 76354825 693505 703701 NC_000014.9 scf10 99.83 True fake: not a misassembly (possible transposable element) 64386955 64388638 705385 703702 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 76355784 76358165 705396 707777 NC_000014.9 scf10 99.92 True fake: not a misassembly (possible transposable element) 20950554 20951697 708163 709337 NC_000014.9 scf10 96.95 True fake: not a misassembly (possible transposable element) 76359031 76368012 709338 718318 NC_000014.9 scf10 99.99 True relocation, inconsistency = -23669284 52698729 52701697 718319 721287 NC_000014.9 scf10 99.97 True relocation, inconsistency = 11672318 64374055 64374846 722116 721325 NC_000014.9 scf10 99.87 True relocation, inconsistency = 43408198 20960187 20965856 722117 728578 NC_000014.9 scf10 99.65 True local misassembly 20965900 20970053 729428 733580 NC_000014.9 scf10 99.76 True fake: not a misassembly (possible transposable element) 52709156 52710313 733599 734756 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 20970374 20972267 734757 736649 NC_000014.9 scf10 99.47 True fake: not a misassembly (possible transposable element) 52711468 52713028 736650 738210 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 20972968 20975100 738211 740341 NC_000014.9 scf10 99.77 True fake: not a misassembly (possible transposable element) 64360686 64363189 743189 740686 NC_000014.9 scf10 99.92 True fake: not a misassembly (possible transposable element) 20977643 20980633 743617 746608 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 64356130 64357659 748362 746833 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 20981695 20984161 748363 750828 NC_000014.9 scf10 99.76 True fake: not a misassembly (possible transposable element) 52721291 52727054 750829 756593 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 20987569 20993676 756594 762705 NC_000014.9 scf10 99.69 True fake: not a misassembly (possible transposable element) 64345062 64345770 763451 762743 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 20993767 21000669 763565 770471 NC_000014.9 scf10 99.84 True fake: not a misassembly (possible transposable element) 52737131 52737920 770472 771261 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21000806 21003809 771422 774425 NC_000014.9 scf10 100.0 True relocation, inconsistency = 31736324 52740134 52742925 774426 777217 NC_000014.9 scf10 99.96 True fake: scaffold gap size wrong estimation (local) 52743453 52745123 778520 780190 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 64330391 64331290 781253 780355 NC_000014.9 scf10 99.89 True fake: not a misassembly (possible transposable element) 52745429 52747970 781329 783870 NC_000014.9 scf10 99.88 True relocation, inconsistency = 11580395 64328371 64329526 785026 783871 NC_000014.9 scf10 100.0 True relocation, inconsistency = 43315769 21010963 21012601 785027 786665 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52749942 52751982 786666 788706 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 21013769 21014284 788719 789234 NC_000014.9 scf10 99.81 True local misassembly 21014607 21016140 789235 790768 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 21016194 21020214 791637 795657 NC_000014.9 scf10 99.25 True fake: not a misassembly (possible transposable element) 64320813 64321409 796881 796285 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21020830 21049794 797083 826077 NC_000014.9 scf10 99.82 True fake: not a misassembly (possible transposable element) 64295995 64297421 827519 826093 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21050476 21053592 827520 830636 NC_000014.9 scf10 99.87 True relocation, inconsistency = 43235667 64289260 64293647 835024 830637 NC_000014.9 scf10 99.98 True relocation, inconsistency = 11499213 52788899 52790001 835070 836172 NC_000014.9 scf10 99.91 True local misassembly 52790266 52791750 836173 837657 NC_000014.9 scf10 99.87 True fake: not a misassembly (possible transposable element) 21059056 21060082 837658 838683 NC_000014.9 scf10 99.81 True fake: not a misassembly (possible transposable element) 52791868 52792968 838684 839784 NC_000014.9 scf10 99.91 True fake: not a misassembly (possible transposable element) 21060323 21062746 839785 842208 NC_000014.9 scf10 99.79 True fake: not a misassembly (possible transposable element) 52796937 52799803 846453 849319 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 21066851 21067855 849320 850327 NC_000014.9 scf10 99.41 True fake: not a misassembly (possible transposable element) 52800457 52804081 850677 854301 NC_000014.9 scf10 100.0 True relocation, inconsistency = -31732954 21071135 21077371 854309 860547 NC_000014.9 scf10 99.84 True fake: scaffold gap size wrong estimation (local) 21077288 21083430 861258 867393 NC_000014.9 scf10 99.74 True fake: not a misassembly (possible transposable element) 52813542 52814787 867947 869192 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21084485 21094737 869193 879442 NC_000014.9 scf10 99.91 True fake: scaffold gap size wrong estimation (local) 21094988 21098189 880463 883664 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 52825282 52828565 883665 886941 NC_000014.9 scf10 99.63 True fake: not a misassembly (possible transposable element) 21100700 21105746 886942 891988 NC_000014.9 scf10 99.9 True local misassembly 21105763 21107833 892809 894879 NC_000014.9 scf10 99.9 True indel: indel (<= 5bp) 21107838 21108757 894880 895799 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52834780 52836812 895800 897831 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 21110029 21111843 897832 899646 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52837699 52838256 899647 900210 NC_000014.9 scf10 98.76 True fake: not a misassembly (possible transposable element) 21111748 21113838 900374 902464 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 52839120 52839725 902473 903078 NC_000014.9 scf10 99.83 True fake: not a misassembly (possible transposable element) 21114142 21120389 903568 909824 NC_000014.9 scf10 99.68 True relocation, inconsistency = 31724319 52844730 52846313 909846 911403 NC_000014.9 scf10 97.41 True relocation, inconsistency = 14582966 67429280 67431202 913326 911404 NC_000014.9 scf10 99.95 True relocation, inconsistency = 46304461 21122338 21124818 913327 915807 NC_000014.9 scf10 99.76 True relocation, inconsistency = 31725193 52850012 52850942 915808 916738 NC_000014.9 scf10 99.89 True relocation, inconsistency = 14573036 67423979 67426644 919404 916739 NC_000014.9 scf10 99.96 True fake: not a misassembly (possible transposable element) 21127622 21130417 919405 922200 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 67419695 67421874 924380 922201 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 52855865 52859879 924733 928747 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 67408054 67416010 936802 928856 NC_000014.9 scf10 99.87 True relocation, inconsistency = 46267151 21140195 21140902 936803 937510 NC_000014.9 scf10 99.15 True relocation, inconsistency = 31725371 52866274 52867113 937511 938350 NC_000014.9 scf10 99.64 True fake: not a misassembly (possible transposable element) 67406185 67407218 939880 938847 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52867808 52870265 939881 942338 NC_000014.9 scf10 99.8 True relocation, inconsistency = -31725828 21144441 21146123 942342 944020 NC_000014.9 scf10 99.76 True relocation, inconsistency = 46253661 67399785 67402857 947093 944021 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14514969 52874235 52884815 947094 957693 NC_000014.9 scf10 99.71 True relocation, inconsistency = 14504064 67388880 67391604 960420 957694 NC_000014.9 scf10 99.93 True fake: scaffold gap size wrong estimation (local) 67379793 67388979 970291 961105 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14484808 52893272 52894984 970292 972000 NC_000014.9 scf10 99.71 True relocation, inconsistency = -31727298 21167687 21171603 972001 975918 NC_000014.9 scf10 99.9 True relocation, scaffold gap is present, inconsistency = 46198029 67370009 67375336 981614 976295 NC_000014.9 scf10 99.85 True fake: not a misassembly (possible transposable element) 52902350 52905125 981615 984388 NC_000014.9 scf10 99.82 True fake: not a misassembly (possible transposable element) 67356163 67367952 996178 984389 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52914002 52916175 996179 998353 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 67354865 67355477 999183 998571 NC_000014.9 scf10 100.0 True indel: indel (> 5bp) 67348486 67354670 1005484 999302 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 52922592 52926436 1005485 1009350 NC_000014.9 scf10 99.12 True fake: not a misassembly (possible transposable element) 67342087 67345069 1013545 1010563 NC_000014.9 scf10 99.97 True relocation, inconsistency = 46131425 21201397 21210661 1013546 1022810 NC_000014.9 scf10 99.92 True relocation, inconsistency = 46119867 67330529 67334246 1026528 1022811 NC_000014.9 scf10 100.0 True relocation, inconsistency = 14388287 52939643 52942209 1026561 1029127 NC_000014.9 scf10 99.84 True fake: scaffold gap size wrong estimation (local) 52942278 52946929 1030008 1034659 NC_000014.9 scf10 99.36 True fake: not a misassembly (possible transposable element) 21219386 21220581 1034660 1035855 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52947358 52951188 1036644 1040474 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 21223450 21226895 1040475 1043911 NC_000014.9 scf10 99.68 True fake: not a misassembly (possible transposable element) 52953811 52959243 1043915 1049347 NC_000014.9 scf10 99.94 True relocation, inconsistency = -31729683 21229561 21239385 1049348 1059172 NC_000014.9 scf10 99.95 True relocation, scaffold gap is present, inconsistency = 31727334 52967171 52967994 1059624 1060448 NC_000014.9 scf10 99.88 True local misassembly 52969023 52970096 1061424 1062497 NC_000014.9 scf10 99.81 True local misassembly 52970327 52971469 1062961 1064103 NC_000014.9 scf10 99.83 True fake: not a misassembly (possible transposable element) 21242958 21245077 1064104 1066223 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 52972748 52978959 1066224 1072435 NC_000014.9 scf10 99.92 True relocation, scaffold gap is present, inconsistency = -31729422 21249594 21250277 1072492 1073175 NC_000014.9 scf10 99.85 True local misassembly 21254329 21254828 1073176 1073675 NC_000014.9 scf10 100.0 True local misassembly 21256207 21258219 1075093 1077105 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 52982011 52983489 1077157 1078638 NC_000014.9 scf10 99.66 True fake: not a misassembly (possible transposable element) 21258968 21259897 1078639 1079568 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52984099 52988795 1079984 1084651 NC_000014.9 scf10 99.15 True fake: not a misassembly (possible transposable element) 21263961 21266165 1084652 1086856 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52990312 52996414 1086939 1093041 NC_000014.9 scf10 99.89 True fake: not a misassembly (possible transposable element) 21270462 21272083 1093142 1094763 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 52997399 53000500 1094764 1097865 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 21274136 21276267 1097951 1100072 NC_000014.9 scf10 99.44 True relocation, inconsistency = 31725618 53001886 53013125 1100073 1113702 NC_000014.9 scf10 99.74 True fake: scaffold gap size wrong estimation (local) 53013537 53015157 1115005 1116645 NC_000014.9 scf10 98.72 True fake: not a misassembly (possible transposable element) 21294303 21294862 1117842 1118401 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53016327 53017094 1118709 1119476 NC_000014.9 scf10 100.0 True local misassembly 53015636 53016194 1119477 1120034 NC_000014.9 scf10 99.82 True fake: not a misassembly (possible transposable element) 21296084 21297417 1120730 1122075 NC_000014.9 scf10 98.89 True fake: not a misassembly (possible transposable element) 53017420 53022431 1122129 1127140 NC_000014.9 scf10 99.86 True relocation, inconsistency = -31722174 21300707 21301677 1127590 1128560 NC_000014.9 scf10 99.9 True indel: indel (<= 5bp) 21301678 21302866 1128564 1129752 NC_000014.9 scf10 99.83 True fake: scaffold gap size wrong estimation (local) 21302867 21303784 1130583 1131500 NC_000014.9 scf10 100.0 True relocation, inconsistency = 31721335 53025120 53026160 1131501 1132541 NC_000014.9 scf10 100.0 True local misassembly 53026472 53028333 1132645 1134506 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 21306679 21309942 1135079 1138637 NC_000014.9 scf10 95.61 True fake: not a misassembly (possible transposable element) 53030710 53033458 1138639 1141387 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21311932 21312779 1141388 1142235 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53033862 53043490 1142550 1152178 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 21320611 21322287 1152431 1154107 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 53044660 53048396 1154108 1157844 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21324326 21328052 1157845 1161571 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53051410 53058295 1161572 1168458 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 21332411 21334991 1168459 1171039 NC_000014.9 scf10 99.96 True fake: not a misassembly (possible transposable element) 53059696 53062058 1171519 1173880 NC_000014.9 scf10 99.87 True local misassembly 53062617 53063492 1174308 1175183 NC_000014.9 scf10 99.89 True fake: not a misassembly (possible transposable element) 21338108 21339096 1175836 1176824 NC_000014.9 scf10 99.8 True fake: not a misassembly (possible transposable element) 53064239 53067601 1176825 1180187 NC_000014.9 scf10 100.0 True indel: indel (> 5bp) 53067689 53068258 1180245 1180814 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21342630 21343880 1180815 1182065 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53068779 53077753 1182067 1191041 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 21351351 21355294 1191042 1194985 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53080031 53080716 1195336 1196021 NC_000014.9 scf10 100.0 True local misassembly 53081223 53082456 1196022 1197255 NC_000014.9 scf10 100.0 True relocation, inconsistency = -31725613 21356844 21370961 1197256 1212162 NC_000014.9 scf10 99.32 True fake: not a misassembly (possible transposable element) 53093365 53093995 1212163 1212793 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 21371266 21373078 1213282 1215094 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53095537 53099024 1215095 1218582 NC_000014.9 scf10 99.97 True fake: not a misassembly (possible transposable element) 21375793 21377091 1219196 1220494 NC_000014.9 scf10 100.0 True relocation, inconsistency = 31723063 53100155 53107873 1220495 1228213 NC_000014.9 scf10 99.99 True fake: not a misassembly (possible transposable element) 21382777 21386663 1228236 1232122 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53111059 53112276 1232132 1233349 NC_000014.9 scf10 100.0 True relocation, inconsistency = -31725311 21386966 21387539 1233350 1233923 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 21387722 21389228 1234008 1235512 NC_000014.9 scf10 99.73 True fake: not a misassembly (possible transposable element) 53113659 53114569 1235513 1236423 NC_000014.9 scf10 99.89 True fake: not a misassembly (possible transposable element) 21389367 21393051 1236424 1240108 NC_000014.9 scf10 99.92 True fake: not a misassembly (possible transposable element) 53116862 53117832 1240129 1241099 NC_000014.9 scf10 99.9 True fake: not a misassembly (possible transposable element) 21393352 21394701 1241265 1242614 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53118941 53119606 1243176 1243841 NC_000014.9 scf10 99.7 True fake: not a misassembly (possible transposable element) 21394937 21396768 1243889 1245720 NC_000014.9 scf10 99.95 True fake: not a misassembly (possible transposable element) 53121704 53123292 1245721 1247303 NC_000014.9 scf10 99.62 True fake: not a misassembly (possible transposable element) 21397582 21413602 1247304 1263321 NC_000014.9 scf10 99.96 True fake: not a misassembly (possible transposable element) 53135302 53136225 1263322 1264245 NC_000014.9 scf10 99.78 True fake: not a misassembly (possible transposable element) 21413809 21416612 1264246 1267049 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53138260 53139760 1267050 1268549 NC_000014.9 scf10 99.87 True fake: not a misassembly (possible transposable element) 21416980 21417726 1269116 1269862 NC_000014.9 scf10 100.0 True local misassembly 21418726 21419444 1269863 1270581 NC_000014.9 scf10 99.86 True relocation, inconsistency = 31720659 53140104 53148539 1270582 1279068 NC_000014.9 scf10 99.29 True fake: not a misassembly (possible transposable element) 21425545 21427544 1279336 1281335 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53150002 53152740 1281336 1284074 NC_000014.9 scf10 99.93 True fake: not a misassembly (possible transposable element) 21429454 21434120 1284075 1288742 NC_000014.9 scf10 99.96 True fake: not a misassembly (possible transposable element) 53155668 53156865 1288743 1289940 NC_000014.9 scf10 100.0 True relocation, inconsistency = -31722275 21434591 21441737 1289941 1297087 NC_000014.9 scf10 99.99 True local misassembly 21442095 21442688 1297349 1297942 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53162638 53165069 1298223 1300654 NC_000014.9 scf10 99.88 True fake: not a misassembly (possible transposable element) 21444383 21445566 1300655 1301838 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53165384 53166943 1301839 1303398 NC_000014.9 scf10 99.94 True fake: not a misassembly (possible transposable element) 21446318 21448851 1303432 1305965 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53168827 53171395 1305966 1308534 NC_000014.9 scf10 99.81 True fake: not a misassembly (possible transposable element) 21450675 21451464 1308535 1309324 NC_000014.9 scf10 100.0 True relocation, scaffold gap is present, inconsistency = 31719766 53171516 53172501 1309610 1310595 NC_000014.9 scf10 100.0 True local misassembly 53172716 53173696 1310596 1311576 NC_000014.9 scf10 99.8 True fake: not a misassembly (possible transposable element) 21452589 21454152 1311577 1313140 NC_000014.9 scf10 100.0 True fake: not a misassembly (possible transposable element) 53174215 53175581 1313141 1314507 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 53175489 53178277 1315398 1318186 NC_000014.9 scf10 99.89 True fake: scaffold gap size wrong estimation (local) 53178231 53181714 1318986 1322515 NC_000014.9 scf10 98.67 True fake: scaffold gap size wrong estimation (local) 53181803 53185101 1323403 1326633 NC_000014.9 scf10 97.88 True fake: scaffold gap size wrong estimation (local) 53185022 53192625 1327513 1335525 NC_000014.9 scf10 95.47 True fake: scaffold gap size wrong estimation (local) 53192538 53194014 1336412 1337888 NC_000014.9 scf10 99.73 True fake: scaffold gap size wrong estimation (local) 53194126 53195066 1338253 1339193 NC_000014.9 scf10 99.89 True fake: scaffold gap size wrong estimation (local) 53195600 53205316 1340574 1350241 NC_000014.9 scf10 99.37 True fake: scaffold gap size wrong estimation (local) 53205697 53208834 1351370 1354505 NC_000014.9 scf10 99.94 True fake: scaffold gap size wrong estimation (local) 53208737 53209993 1355211 1356467 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 53210469 53211347 1358018 1358896 NC_000014.9 scf10 100.0 True local misassembly 53211691 53212553 1358897 1359759 NC_000014.9 scf10 100.0 True fake: scaffold gap size wrong estimation (local) 53212457 53220785 1360988 1370097 NC_000014.9 scf10 98.92 True fake: scaffold gap size wrong estimation (local) 53220616 53223150 1370575 1373114 NC_000014.9 scf10 99.53 True fake: scaffold gap size wrong estimation (local) 53223264 53234410 1373976 1385973 NC_000014.9 scf10 99.21 True fake: scaffold gap size wrong estimation (local) 53234526 53243185 1386917 1396239 NC_000014.9 scf10 98.96 True fake: scaffold gap size wrong estimation (local) 53243104 53251025 1396936 1406487 NC_000014.9 scf10 98.76 True fake: scaffold gap size wrong estimation (local) 53250931 53252707 1407173 1408949 NC_000014.9 scf10 99.94 True local misassembly 53253296 53253996 1409376 1410076 NC_000014.9 scf10 99.71 True fake: scaffold gap size wrong estimation (local) 53253917 53266508 1410895 1424275 NC_000014.9 scf10 99.59 True CONTIG scf10 1424275 misassembled 49149049 49158924 1910 13434 NC_000014.9 scf11 98.3 True fake: scaffold gap size wrong estimation (local) 49158860 49180081 14116 36100 NC_000014.9 scf11 99.75 True fake: scaffold gap size wrong estimation (local) 49180253 49197074 37057 56460 NC_000014.9 scf11 98.68 True fake: scaffold gap size wrong estimation (local) 49196989 49213234 57156 73414 NC_000014.9 scf11 99.83 True fake: scaffold gap size wrong estimation (local) 49213189 49246016 74135 107721 NC_000014.9 scf11 99.91 True fake: scaffold gap size wrong estimation (local) 49246741 49247651 108394 109304 NC_000014.9 scf11 100.0 True local misassembly 49246251 49246820 109331 109900 NC_000014.9 scf11 100.0 True fake: scaffold gap size wrong estimation (local) 49247568 49250515 110302 113249 NC_000014.9 scf11 100.0 True fake: scaffold gap size wrong estimation (local) 49250426 49260994 113959 125312 NC_000014.9 scf11 99.38 True fake: scaffold gap size wrong estimation (local) 49260915 49306799 125938 172521 NC_000014.9 scf11 99.91 True fake: scaffold gap size wrong estimation (local) 49306702 49310850 173170 177318 NC_000014.9 scf11 99.86 True fake: scaffold gap size wrong estimation (local) 49310762 49314092 177970 181286 NC_000014.9 scf11 99.34 True fake: scaffold gap size wrong estimation (local) 49314446 49324986 182384 193684 NC_000014.9 scf11 99.15 True fake: scaffold gap size wrong estimation (local) 49324889 49327070 194422 196603 NC_000014.9 scf11 99.95 True local misassembly 49327488 49328529 196604 197645 NC_000014.9 scf11 99.9 True fake: scaffold gap size wrong estimation (local) 49328431 49334800 199591 205960 NC_000014.9 scf11 100.0 True fake: scaffold gap size wrong estimation (local) 49334708 49337815 206659 209765 NC_000014.9 scf11 99.97 True fake: scaffold gap size wrong estimation (local) 49337735 49349855 210440 222568 NC_000014.9 scf11 99.57 True CONTIG scf11 222568 correct 43243587 43253948 11130 1 NC_000014.9 scf12 99.71 True fake: scaffold gap size wrong estimation (local) 43231832 43243684 24563 11914 NC_000014.9 scf12 97.96 True fake: scaffold gap size wrong estimation (local) 43192950 43231924 64412 25438 NC_000014.9 scf12 100.0 True fake: scaffold gap size wrong estimation (local) 43180323 43192998 77793 65118 NC_000014.9 scf12 100.0 True fake: scaffold gap size wrong estimation (local) 43161409 43180421 97467 78455 NC_000014.9 scf12 99.98 True fake: scaffold gap size wrong estimation (local) 43128924 43161507 133079 98130 NC_000014.9 scf12 99.59 True fake: scaffold gap size wrong estimation (local) 43107696 43127863 155027 134867 NC_000014.9 scf12 99.73 True fake: scaffold gap size wrong estimation (local) 43091816 43107793 173136 156463 NC_000014.9 scf12 99.29 True fake: scaffold gap size wrong estimation (local) 43090136 43091914 175600 173822 NC_000014.9 scf12 99.78 True fake: scaffold gap size wrong estimation (local) 43087355 43090043 179252 176576 NC_000014.9 scf12 99.33 True fake: scaffold gap size wrong estimation (local) 43080456 43087106 186824 180247 NC_000014.9 scf12 98.51 True fake: scaffold gap size wrong estimation (local) 43078603 43080542 189469 187530 NC_000014.9 scf12 99.95 True fake: scaffold gap size wrong estimation (local) 43068097 43078680 201569 190188 NC_000014.9 scf12 99.72 True CONTIG scf12 201578 correct 62978572 62983427 180 5035 NC_000014.9 scf13 99.98 True fake: scaffold gap size wrong estimation (local) 62983338 62997748 5728 20138 NC_000014.9 scf13 100.0 True fake: scaffold gap size wrong estimation (local) 62997834 62999084 21067 22315 NC_000014.9 scf13 99.68 True fake: scaffold gap size wrong estimation (local) 62999798 63003471 23764 27437 NC_000014.9 scf13 99.97 True fake: scaffold gap size wrong estimation (local) 63003617 63042220 28310 66915 NC_000014.9 scf13 99.99 True fake: scaffold gap size wrong estimation (local) 63042122 63050740 67554 76938 NC_000014.9 scf13 99.66 True fake: scaffold gap size wrong estimation (local) 63050643 63064679 77598 93887 NC_000014.9 scf13 99.61 True fake: scaffold gap size wrong estimation (local) 63064816 63066312 95017 96513 NC_000014.9 scf13 100.0 True local misassembly 63066618 63067325 96514 97221 NC_000014.9 scf13 99.86 True fake: scaffold gap size wrong estimation (local) 63067228 63070075 98185 101032 NC_000014.9 scf13 100.0 True fake: scaffold gap size wrong estimation (local) 63070243 63071304 101395 102456 NC_000014.9 scf13 100.0 True fake: scaffold gap size wrong estimation (local) 63071215 63075566 103306 107657 NC_000014.9 scf13 100.0 True fake: scaffold gap size wrong estimation (local) 63075471 63079418 108294 112241 NC_000014.9 scf13 99.97 True fake: scaffold gap size wrong estimation (local) 63079541 63081495 113114 115066 NC_000014.9 scf13 99.85 True fake: scaffold gap size wrong estimation (local) 63081399 63091739 115756 127535 NC_000014.9 scf13 98.39 True fake: scaffold gap size wrong estimation (local) 63091680 63097799 128212 134340 NC_000014.9 scf13 99.82 True fake: scaffold gap size wrong estimation (local) 63097708 63105340 134999 143367 NC_000014.9 scf13 99.69 True fake: scaffold gap size wrong estimation (local) 63105242 63107093 143991 145940 NC_000014.9 scf13 95.85 True fake: scaffold gap size wrong estimation (local) 63109117 63114344 149647 154907 NC_000014.9 scf13 99.28 True fake: scaffold gap size wrong estimation (local) 63114248 63116718 155610 158080 NC_000014.9 scf13 99.96 True CONTIG scf13 158102 correct 33498929 33518610 1 19684 NC_000014.9 scf14 99.76 True fake: scaffold gap size wrong estimation (local) 33518529 33540959 20345 43568 NC_000014.9 scf14 99.79 True fake: scaffold gap size wrong estimation (local) 33541098 33555916 44478 60069 NC_000014.9 scf14 99.88 True fake: scaffold gap size wrong estimation (local) 33555819 33557751 60763 62698 NC_000014.9 scf14 99.33 True fake: scaffold gap size wrong estimation (local) 33557865 33559846 63694 65675 NC_000014.9 scf14 99.9 True fake: scaffold gap size wrong estimation (local) 33560010 33572914 66638 79560 NC_000014.9 scf14 99.68 True fake: scaffold gap size wrong estimation (local) 33573020 33606217 80413 113619 NC_000014.9 scf14 99.92 True fake: scaffold gap size wrong estimation (local) 33606351 33659388 114480 168253 NC_000014.9 scf14 99.95 True fake: scaffold gap size wrong estimation (local) 33659289 33662554 168913 172178 NC_000014.9 scf14 99.97 True fake: scaffold gap size wrong estimation (local) 33664294 33664860 173684 174250 NC_000014.9 scf14 100.0 True indel: indel (> 5bp) 33665135 33721379 174556 231498 NC_000014.9 scf14 99.44 True fake: scaffold gap size wrong estimation (local) 33721289 33744762 232169 255640 NC_000014.9 scf14 99.94 True fake: scaffold gap size wrong estimation (local) 33744668 33746838 256389 258819 NC_000014.9 scf14 100.0 True fake: scaffold gap size wrong estimation (local) 33747267 33771582 260192 284246 NC_000014.9 scf14 98.27 True fake: scaffold gap size wrong estimation (local) 33771483 33776602 284967 290080 NC_000014.9 scf14 99.77 True fake: scaffold gap size wrong estimation (local) 33776532 33784740 290786 298994 NC_000014.9 scf14 100.0 True fake: scaffold gap size wrong estimation (local) 33785435 33788058 300489 303110 NC_000014.9 scf14 99.89 True fake: scaffold gap size wrong estimation (local) 33787962 33789595 303793 305426 NC_000014.9 scf14 99.94 True fake: scaffold gap size wrong estimation (local) 33789805 33790827 305573 306595 NC_000014.9 scf14 99.71 True fake: scaffold gap size wrong estimation (local) 33790745 33797948 307346 314541 NC_000014.9 scf14 99.72 True fake: scaffold gap size wrong estimation (local) 33797864 33806128 315249 324355 NC_000014.9 scf14 99.47 True fake: scaffold gap size wrong estimation (local) 33806040 33808458 325075 327493 NC_000014.9 scf14 99.63 True fake: scaffold gap size wrong estimation (local) 33808367 33811241 328192 331066 NC_000014.9 scf14 99.93 True fake: scaffold gap size wrong estimation (local) 33811676 33820789 332238 342291 NC_000014.9 scf14 99.57 True fake: scaffold gap size wrong estimation (local) 33821176 33826715 343256 348816 NC_000014.9 scf14 99.35 True CONTIG scf14 348816 correct 76368192 76379873 1 12389 NC_000014.9 scf15 99.75 True fake: scaffold gap size wrong estimation (local) 76379819 76396127 13116 32738 NC_000014.9 scf15 99.44 True fake: scaffold gap size wrong estimation (local) 76396028 76403791 33460 41217 NC_000014.9 scf15 99.79 True fake: scaffold gap size wrong estimation (local) 76403939 76413991 42176 54793 NC_000014.9 scf15 98.64 True fake: scaffold gap size wrong estimation (local) 76414175 76416700 55810 58334 NC_000014.9 scf15 99.96 True fake: scaffold gap size wrong estimation (local) 76416618 76419277 59186 61737 NC_000014.9 scf15 95.9 True fake: scaffold gap size wrong estimation (local) 76419183 76422229 62502 65545 NC_000014.9 scf15 99.87 True fake: scaffold gap size wrong estimation (local) 76422404 76423163 66498 67257 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76423303 76424855 67390 68942 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76424762 76425819 70111 71168 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76425784 76434170 72166 80552 NC_000014.9 scf15 99.96 True fake: scaffold gap size wrong estimation (local) 76434076 76435653 81250 82827 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76435556 76442837 83639 90939 NC_000014.9 scf15 99.74 True fake: scaffold gap size wrong estimation (local) 76443050 76445394 91926 94193 NC_000014.9 scf15 96.72 True fake: scaffold gap size wrong estimation (local) 76445685 76446375 95398 96088 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76446376 76447243 96460 97327 NC_000014.9 scf15 100.0 True indel: indel (<= 5bp) 76447244 76448356 97332 98444 NC_000014.9 scf15 100.0 True local misassembly 76448748 76449347 98445 99044 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76449268 76452090 100078 102903 NC_000014.9 scf15 99.72 True fake: scaffold gap size wrong estimation (local) 76452049 76452626 103867 104444 NC_000014.9 scf15 100.0 True local misassembly 76452865 76453613 104471 105219 NC_000014.9 scf15 100.0 True local misassembly 76453745 76455087 105220 106562 NC_000014.9 scf15 100.0 True indel: indel (> 5bp) 76455114 76456070 106563 107519 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 76455971 76458514 108572 111112 NC_000014.9 scf15 99.84 True fake: scaffold gap size wrong estimation (local) 76458993 76467270 112359 121467 NC_000014.9 scf15 99.99 True fake: not a misassembly (possible transposable element) 35579385 35584857 126940 121468 NC_000014.9 scf15 99.98 True fake: not a misassembly (possible transposable element) 76471164 76473129 126941 128906 NC_000014.9 scf15 99.85 True relocation, inconsistency = 40893003 35575798 35578160 131269 128907 NC_000014.9 scf15 100.0 True fake: scaffold gap size wrong estimation (local) 35570068 35575687 137752 132097 NC_000014.9 scf15 99.35 True fake: not a misassembly (possible transposable element) 76478200 76479337 137753 138890 NC_000014.9 scf15 99.91 True fake: not a misassembly (possible transposable element) 35562838 35569702 145754 138891 NC_000014.9 scf15 99.99 True relocation, inconsistency = -8458900 44021043 44021737 146449 145755 NC_000014.9 scf15 99.71 True relocation, inconsistency = 32465007 76486745 76494482 146450 154200 NC_000014.9 scf15 99.69 True relocation, inconsistency = 40929918 35554553 35556826 156474 154201 NC_000014.9 scf15 100.0 True relocation, inconsistency = -8458078 44005284 44012630 163821 156475 NC_000014.9 scf15 99.89 True fake: not a misassembly (possible transposable element) 35546354 35547788 165465 164031 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 43998460 44004391 171393 165466 NC_000014.9 scf15 99.83 True relocation, inconsistency = 8456507 35541178 35541892 172168 171454 NC_000014.9 scf15 100.0 True relocation, inconsistency = 40967132 76509025 76524557 172169 187702 NC_000014.9 scf15 99.83 True fake: not a misassembly (possible transposable element) 35525267 35526461 188897 187703 NC_000014.9 scf15 99.92 True fake: not a misassembly (possible transposable element) 76524943 76526373 188898 190326 NC_000014.9 scf15 99.72 True relocation, inconsistency = 32542203 43979718 43982739 193349 190327 NC_000014.9 scf15 99.87 True fake: not a misassembly (possible transposable element) 35519043 35522384 196691 193350 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 43976266 43977372 198180 197075 NC_000014.9 scf15 99.73 True fake: not a misassembly (possible transposable element) 35515587 35518304 200888 198181 NC_000014.9 scf15 99.63 True fake: not a misassembly (possible transposable element) 43973811 43974649 201726 200889 NC_000014.9 scf15 99.88 True fake: not a misassembly (possible transposable element) 35511258 35515497 205966 201727 NC_000014.9 scf15 99.88 True fake: not a misassembly (possible transposable element) 43968637 43970306 207635 205967 NC_000014.9 scf15 99.94 True fake: not a misassembly (possible transposable element) 35508202 35510044 209793 207952 NC_000014.9 scf15 99.89 True fake: not a misassembly (possible transposable element) 43965485 43967213 211522 209794 NC_000014.9 scf15 100.0 True relocation, inconsistency = 32574349 76541563 76543667 211523 213627 NC_000014.9 scf15 99.81 True relocation, inconsistency = 12253216 64286410 64288346 215564 213628 NC_000014.9 scf15 100.0 True relocation, inconsistency = 20322891 43959974 43963065 219109 216018 NC_000014.9 scf15 99.87 True relocation, inconsistency = 8459586 35499832 35500375 219665 219122 NC_000014.9 scf15 99.82 True relocation, inconsistency = 41047156 76547646 76548787 219780 220921 NC_000014.9 scf15 99.82 True relocation, inconsistency = 12264299 64280942 64283075 223326 221193 NC_000014.9 scf15 100.0 True relocation, inconsistency = 20324461 43955685 43956436 224121 223371 NC_000014.9 scf15 99.73 True relocation, inconsistency = 32594782 76551219 76551925 224122 224828 NC_000014.9 scf15 100.0 True local misassembly 76553065 76553642 225756 226332 NC_000014.9 scf15 99.65 True relocation, inconsistency = 32598872 43951293 43954192 229232 226333 NC_000014.9 scf15 99.97 True fake: not a misassembly (possible transposable element) 35491491 35493616 231357 229233 NC_000014.9 scf15 99.95 True fake: not a misassembly (possible transposable element) 43948103 43949937 233192 231358 NC_000014.9 scf15 99.78 True relocation, inconsistency = -20324390 64271235 64272492 234450 233193 NC_000014.9 scf15 99.84 True relocation, inconsistency = 12286597 76559090 76560735 234451 236096 NC_000014.9 scf15 99.94 True relocation, inconsistency = 32613202 43944492 43945887 237492 236097 NC_000014.9 scf15 100.0 True relocation, inconsistency = -20324514 64267891 64269005 238607 237493 NC_000014.9 scf15 100.0 True relocation, inconsistency = 12293409 76562415 76563554 238608 239748 NC_000014.9 scf15 99.82 True relocation, inconsistency = 32619395 43941621 43943019 241147 239749 NC_000014.9 scf15 99.86 True relocation, inconsistency = 8457437 35480794 35484183 244537 241148 NC_000014.9 scf15 99.97 True fake: not a misassembly (possible transposable element) 64261672 64262723 245589 244538 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35475123 35480481 250948 245590 NC_000014.9 scf15 99.98 True fake: not a misassembly (possible transposable element) 43930424 43935004 255529 250949 NC_000014.9 scf15 99.89 True fake: not a misassembly (possible transposable element) 35469180 35471247 257597 255530 NC_000014.9 scf15 100.0 True relocation, inconsistency = -8459876 43920814 43929050 265838 257603 NC_000014.9 scf15 99.88 True fake: not a misassembly (possible transposable element) 76583732 76588166 265839 270281 NC_000014.9 scf15 99.71 True fake: not a misassembly (possible transposable element) 43913235 43916723 274176 270688 NC_000014.9 scf15 99.94 True relocation, inconsistency = -20325340 64237143 64238574 275608 274177 NC_000014.9 scf15 100.0 True relocation, inconsistency = 12353216 76591791 76593062 275609 276880 NC_000014.9 scf15 99.53 True relocation, inconsistency = 41138753 35451610 35453037 278308 276881 NC_000014.9 scf15 99.72 True relocation, inconsistency = -28783629 64233580 64234989 279967 278558 NC_000014.9 scf15 99.93 True relocation, inconsistency = 12360342 76595332 76596115 279968 280751 NC_000014.9 scf15 99.62 True relocation, inconsistency = 32686819 43905230 43908400 284034 280864 NC_000014.9 scf15 99.94 True relocation, inconsistency = -20325926 64227446 64230838 287743 284352 NC_000014.9 scf15 99.85 True relocation, inconsistency = 12370693 76601532 76602169 287744 288380 NC_000014.9 scf15 99.69 True relocation, inconsistency = 32699904 43866601 43901627 323408 288381 NC_000014.9 scf15 99.95 True relocation, inconsistency = 8451375 35414212 35415225 324422 323409 NC_000014.9 scf15 100.0 True relocation, inconsistency = 41216014 76631259 76633313 324442 326496 NC_000014.9 scf15 99.85 True relocation, inconsistency = 12439447 64189215 64191811 329093 326497 NC_000014.9 scf15 100.0 True relocation, inconsistency = 28777890 35410205 35410859 330213 329559 NC_000014.9 scf15 99.85 True relocation, inconsistency = -8451344 43860225 43861317 331537 330445 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 64185491 64187536 333576 331538 NC_000014.9 scf15 99.66 True fake: not a misassembly (possible transposable element) 43857297 43858975 335273 333595 NC_000014.9 scf15 100.0 True relocation, inconsistency = 8449773 35406774 35407321 336023 335476 NC_000014.9 scf15 99.64 True relocation, inconsistency = 41232672 76639994 76642224 336024 338254 NC_000014.9 scf15 99.91 True relocation, inconsistency = 12457784 64180546 64182028 339918 338436 NC_000014.9 scf15 100.0 True relocation, inconsistency = 20326817 43851293 43853728 342354 339919 NC_000014.9 scf15 99.96 True fake: not a misassembly (possible transposable element) 76645504 76651336 342361 348188 NC_000014.9 scf15 99.74 True fake: not a misassembly (possible transposable element) 43826931 43846936 368185 348189 NC_000014.9 scf15 99.83 True relocation, inconsistency = -20330197 64151434 64157127 373878 368186 NC_000014.9 scf15 99.96 True relocation, inconsistency = 12514605 76671743 76672591 373889 374737 NC_000014.9 scf15 99.53 True fake: not a misassembly (possible transposable element) 43819248 43820895 376708 375061 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 76673651 76675987 376709 379045 NC_000014.9 scf15 99.96 True relocation, inconsistency = 12526658 64145495 64146992 380543 379046 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35367616 35371913 384837 380544 NC_000014.9 scf15 99.58 True fake: not a misassembly (possible transposable element) 64138945 64141718 387836 385063 NC_000014.9 scf15 100.0 True relocation, inconsistency = 12541551 76683297 76691369 387864 395943 NC_000014.9 scf15 99.69 True relocation, scaffold gap is present, inconsistency = 41323751 35358312 35359259 397177 396230 NC_000014.9 scf15 99.79 True relocation, inconsistency = -28774431 64130637 64132742 399283 397178 NC_000014.9 scf15 100.0 True relocation, inconsistency = 20329313 43787410 43801323 413197 399284 NC_000014.9 scf15 99.93 True fake: not a misassembly (possible transposable element) 35343396 35345793 415594 413198 NC_000014.9 scf15 99.79 True fake: not a misassembly (possible transposable element) 43782671 43785786 418710 415595 NC_000014.9 scf15 100.0 True relocation, inconsistency = 8441549 35340149 35341121 419683 418711 NC_000014.9 scf15 99.9 True relocation, inconsistency = -28775313 64111703 64115196 423442 419949 NC_000014.9 scf15 100.0 True relocation, inconsistency = 20332957 43757211 43778745 444971 423443 NC_000014.9 scf15 99.95 True relocation, inconsistency = 12031857 31724647 31725274 445678 445051 NC_000014.9 scf15 99.68 True relocation, inconsistency = 45005977 76731252 76733999 445679 448428 NC_000014.9 scf15 98.8 True relocation, inconsistency = 12640671 64089375 64090580 449634 448429 NC_000014.9 scf15 99.92 True relocation, inconsistency = 20336058 43752391 43753316 450560 449635 NC_000014.9 scf15 100.0 True relocation, inconsistency = 8434637 35316786 35317753 451528 450561 NC_000014.9 scf15 100.0 True relocation, inconsistency = 3596464 31711214 31720321 460637 451529 NC_000014.9 scf15 99.77 True relocation, inconsistency = -12032658 43738263 43743852 466246 460657 NC_000014.9 scf15 99.91 True relocation, inconsistency = -20337728 64068829 64075990 473403 466247 NC_000014.9 scf15 99.79 True fake: not a misassembly (possible transposable element) 31698944 31701087 475597 473454 NC_000014.9 scf15 99.67 True fake: not a misassembly (possible transposable element) 64065052 64067495 478041 475598 NC_000014.9 scf15 99.88 True fake: not a misassembly (possible transposable element) 31696463 31697268 478847 478042 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 64056777 64064631 487078 479224 NC_000014.9 scf15 99.94 True relocation, inconsistency = 28767206 35285356 35289569 491293 487080 NC_000014.9 scf15 100.0 True relocation, inconsistency = -8432589 43712720 43717938 496518 491300 NC_000014.9 scf15 99.94 True relocation, inconsistency = -20336112 64044564 64048831 500786 496519 NC_000014.9 scf15 99.77 True fake: not a misassembly (possible transposable element) 31675070 31679315 505032 500787 NC_000014.9 scf15 99.91 True fake: not a misassembly (possible transposable element) 64038762 64040606 507228 505402 NC_000014.9 scf15 98.75 True relocation, inconsistency = 28765567 35271244 35273194 509199 507229 NC_000014.9 scf15 98.99 True fake: not a misassembly (possible transposable element) 31670349 31672294 511336 509392 NC_000014.9 scf15 99.9 True fake: not a misassembly (possible transposable element) 35268690 35269664 512425 511451 NC_000014.9 scf15 99.9 True fake: not a misassembly (possible transposable element) 64033456 64035467 514438 512428 NC_000014.9 scf15 99.8 True fake: not a misassembly (possible transposable element) 35266319 35267228 515563 514654 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 31667161 31667855 516509 515815 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35263537 35266196 519169 516510 NC_000014.9 scf15 99.89 True relocation, inconsistency = -28767840 64017330 64031376 533944 519170 NC_000014.9 scf15 97.65 True fake: not a misassembly (possible transposable element) 35250190 35252238 535999 533951 NC_000014.9 scf15 99.95 True fake: not a misassembly (possible transposable element) 64015036 64016156 537120 536000 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35245514 35249746 541377 537145 NC_000014.9 scf15 99.88 True fake: not a misassembly (possible transposable element) 64009510 64011825 543691 541378 NC_000014.9 scf15 99.87 True fake: not a misassembly (possible transposable element) 31640867 31644691 548001 544183 NC_000014.9 scf15 99.71 True fake: not a misassembly (possible transposable element) 64004284 64005949 549667 548002 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35239188 35239796 550276 549668 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 63982456 64004188 572321 550577 NC_000014.9 scf15 99.94 True fake: not a misassembly (possible transposable element) 35218543 35223456 577557 572644 NC_000014.9 scf15 99.94 True fake: not a misassembly (possible transposable element) 63974880 63976736 581555 579699 NC_000014.9 scf15 100.0 True relocation, scaffold gap is present, inconsistency = 28758843 35210722 35214798 586867 582794 NC_000014.9 scf15 99.83 True fake: scaffold gap size wrong estimation (local) 35209757 35210406 588516 587867 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 63969421 63970152 589248 588517 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35208099 35209169 590319 589249 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 63964711 63969110 594737 590339 NC_000014.9 scf15 99.98 True fake: not a misassembly (possible transposable element) 35203603 35204484 595642 594738 NC_000014.9 scf15 97.24 True fake: not a misassembly (possible transposable element) 63962662 63964649 597634 595647 NC_000014.9 scf15 100.0 True fake: not a misassembly (possible transposable element) 35199334 35201876 600521 597979 NC_000014.9 scf15 99.92 True fake: not a misassembly (possible transposable element) 63959387 63960407 601986 600966 NC_000014.9 scf15 99.8 True fake: not a misassembly (possible transposable element) 35192982 35198574 607595 602001 NC_000014.9 scf15 99.89 True relocation, inconsistency = -28762412 63953536 63955393 609453 607596 NC_000014.9 scf15 99.78 True indel: indel (<= 5bp) 63948799 63953531 614186 609454 NC_000014.9 scf15 99.66 True local misassembly 63946516 63947708 617220 616028 NC_000014.9 scf15 97.32 True indel: indel (<= 5bp) 63945108 63946513 618626 617221 NC_000014.9 scf15 99.72 True fake: not a misassembly (possible transposable element) 35182166 35185489 622289 618964 NC_000014.9 scf15 99.91 True fake: not a misassembly (possible transposable element) 63940031 63942201 624462 622290 NC_000014.9 scf15 99.82 True fake: scaffold gap size wrong estimation (local) 63916750 63939380 653134 626389 NC_000014.9 scf15 99.33 True fake: scaffold gap size wrong estimation (local) 63913838 63916848 656794 653784 NC_000014.9 scf15 99.8 True fake: scaffold gap size wrong estimation (local) 63896938 63913721 676097 657667 NC_000014.9 scf15 99.74 True fake: scaffold gap size wrong estimation (local) 63895596 63897036 678029 676592 NC_000014.9 scf15 99.79 True fake: scaffold gap size wrong estimation (local) 63892737 63895236 681862 679365 NC_000014.9 scf15 99.84 True fake: scaffold gap size wrong estimation (local) 63883804 63892814 692397 682594 NC_000014.9 scf15 99.31 True fake: scaffold gap size wrong estimation (local) 63880959 63882559 696004 694404 NC_000014.9 scf15 99.88 True CONTIG scf15 696042 misassembled 39924877 39928485 3 4560 NC_000014.9 scf16 99.39 True fake: scaffold gap size wrong estimation (local) 39929963 39935494 6909 12486 NC_000014.9 scf16 99.14 True fake: scaffold gap size wrong estimation (local) 39937101 39938240 14721 15860 NC_000014.9 scf16 100.0 True fake: scaffold gap size wrong estimation (local) 39938402 39942004 16835 20455 NC_000014.9 scf16 99.5 True fake: scaffold gap size wrong estimation (local) 39942973 39943752 21643 22422 NC_000014.9 scf16 100.0 True fake: scaffold gap size wrong estimation (local) 39943710 39947342 23296 26929 NC_000014.9 scf16 99.97 True fake: scaffold gap size wrong estimation (local) 39947264 39950443 27660 30839 NC_000014.9 scf16 100.0 True fake: scaffold gap size wrong estimation (local) 39950705 39952009 31947 33251 NC_000014.9 scf16 99.77 True local misassembly 39952227 39953372 33252 34397 NC_000014.9 scf16 100.0 True fake: scaffold gap size wrong estimation (local) 39953279 39963689 35246 46466 NC_000014.9 scf16 99.64 True fake: scaffold gap size wrong estimation (local) 39963791 39970806 47384 54399 NC_000014.9 scf16 99.96 True fake: scaffold gap size wrong estimation (local) 39970713 40003990 55063 89057 NC_000014.9 scf16 99.68 True fake: scaffold gap size wrong estimation (local) 40003907 40022387 89733 108957 NC_000014.9 scf16 99.79 True fake: scaffold gap size wrong estimation (local) 40023340 40035418 110694 122786 NC_000014.9 scf16 99.88 True fake: scaffold gap size wrong estimation (local) 40035337 40087761 123437 178642 NC_000014.9 scf16 99.67 True fake: scaffold gap size wrong estimation (local) 40089052 40090107 180722 181777 NC_000014.9 scf16 99.53 True fake: scaffold gap size wrong estimation (local) 40090281 40092876 182754 185345 NC_000014.9 scf16 99.61 True fake: scaffold gap size wrong estimation (local) 40092784 40101714 186048 195649 NC_000014.9 scf16 96.12 True fake: scaffold gap size wrong estimation (local) 40101863 40103435 196585 198157 NC_000014.9 scf16 99.94 True fake: scaffold gap size wrong estimation (local) 40103680 40109023 199173 204516 NC_000014.9 scf16 99.91 True fake: scaffold gap size wrong estimation (local) 40109235 40112850 205513 210341 NC_000014.9 scf16 99.56 True fake: scaffold gap size wrong estimation (local) 40112781 40114404 212232 213881 NC_000014.9 scf16 97.7 True fake: scaffold gap size wrong estimation (local) 40114979 40140608 215378 245072 NC_000014.9 scf16 99.06 True fake: scaffold gap size wrong estimation (extensive) 40148496 40156155 245821 253499 NC_000014.9 scf16 99.4 True fake: scaffold gap size wrong estimation (local) 40156484 40157347 254642 255505 NC_000014.9 scf16 99.65 True fake: scaffold gap size wrong estimation (local) 40157253 40160857 256016 259666 NC_000014.9 scf16 98.44 True fake: scaffold gap size wrong estimation (local) 40160762 40173955 260463 274178 NC_000014.9 scf16 97.93 True fake: scaffold gap size wrong estimation (local) 40175129 40193001 276013 293886 NC_000014.9 scf16 99.82 True fake: scaffold gap size wrong estimation (local) 40192912 40198763 294519 300372 NC_000014.9 scf16 99.74 True fake: scaffold gap size wrong estimation (local) 40198849 40203012 301268 305430 NC_000014.9 scf16 99.86 True fake: scaffold gap size wrong estimation (local) 40202915 40209882 306078 313044 NC_000014.9 scf16 99.73 True fake: scaffold gap size wrong estimation (local) 40209783 40217912 313677 321808 NC_000014.9 scf16 99.79 True fake: scaffold gap size wrong estimation (local) 40217826 40266165 322488 371559 NC_000014.9 scf16 99.65 True fake: scaffold gap size wrong estimation (local) 40266639 40274314 372747 380420 NC_000014.9 scf16 99.88 True fake: scaffold gap size wrong estimation (local) 40274231 40276148 381138 383055 NC_000014.9 scf16 100.0 True fake: scaffold gap size wrong estimation (local) 40276051 40290471 383747 398166 NC_000014.9 scf16 99.94 True fake: scaffold gap size wrong estimation (local) 40291719 40298984 400095 407364 NC_000014.9 scf16 99.9 True fake: scaffold gap size wrong estimation (local) 40298905 40307459 408034 416588 NC_000014.9 scf16 99.98 True fake: scaffold gap size wrong estimation (local) 40307360 40321548 418841 433115 NC_000014.9 scf16 99.37 True fake: scaffold gap size wrong estimation (local) 40322329 40326282 434600 438553 NC_000014.9 scf16 99.92 True CONTIG scf16 438553 correct 95654160 95655095 1 936 NC_000014.9 scf17 99.25 True fake: scaffold gap size wrong estimation (local) 95655006 95658262 1847 5238 NC_000014.9 scf17 98.9 True fake: scaffold gap size wrong estimation (local) 95658173 95663880 6143 12633 NC_000014.9 scf17 99.2 True fake: scaffold gap size wrong estimation (local) 95663998 95665801 13817 15648 NC_000014.9 scf17 98.36 True fake: scaffold gap size wrong estimation (local) 95665952 95670518 16598 21164 NC_000014.9 scf17 99.87 True fake: scaffold gap size wrong estimation (local) 95670461 95697096 21973 50950 NC_000014.9 scf17 99.07 True fake: scaffold gap size wrong estimation (local) 95696998 95698846 51634 53482 NC_000014.9 scf17 100.0 True fake: scaffold gap size wrong estimation (local) 95699008 95706087 54418 62256 NC_000014.9 scf17 99.94 True fake: scaffold gap size wrong estimation (local) 95706738 95708310 63708 65280 NC_000014.9 scf17 100.0 True fake: scaffold gap size wrong estimation (local) 95708509 95721487 66304 80822 NC_000014.9 scf17 99.64 True fake: scaffold gap size wrong estimation (local) 95721392 95770417 81492 136739 NC_000014.9 scf17 98.39 True fake: scaffold gap size wrong estimation (local) 95770362 95772486 137517 139682 NC_000014.9 scf17 96.79 True fake: scaffold gap size wrong estimation (local) 95772450 95798777 140501 168318 NC_000014.9 scf17 99.89 True fake: scaffold gap size wrong estimation (local) 95798695 95801728 169019 172052 NC_000014.9 scf17 99.9 True fake: scaffold gap size wrong estimation (local) 95801632 95809536 172764 180668 NC_000014.9 scf17 99.94 True fake: scaffold gap size wrong estimation (local) 95809439 95815307 181364 187238 NC_000014.9 scf17 99.74 True fake: scaffold gap size wrong estimation (local) 95815215 95823915 190527 199213 NC_000014.9 scf17 99.35 True fake: scaffold gap size wrong estimation (local) 95824013 95827666 200004 203656 NC_000014.9 scf17 99.81 True fake: scaffold gap size wrong estimation (local) 95827567 95830006 204356 206795 NC_000014.9 scf17 99.88 True fake: scaffold gap size wrong estimation (local) 95829917 95833437 207520 211044 NC_000014.9 scf17 99.72 True fake: scaffold gap size wrong estimation (local) 95833520 95845565 211887 225016 NC_000014.9 scf17 98.79 True fake: scaffold gap size wrong estimation (local) 95845468 95872075 225874 253750 NC_000014.9 scf17 98.67 True fake: scaffold gap size wrong estimation (local) 95872181 95909474 254796 292088 NC_000014.9 scf17 99.95 True fake: scaffold gap size wrong estimation (local) 95909420 95911712 292848 295140 NC_000014.9 scf17 99.83 True fake: scaffold gap size wrong estimation (local) 95913847 95927726 297160 311043 NC_000014.9 scf17 99.88 True fake: scaffold gap size wrong estimation (local) 95928163 95946806 312059 330726 NC_000014.9 scf17 99.64 True fake: scaffold gap size wrong estimation (local) 95946791 95947521 331599 332329 NC_000014.9 scf17 99.86 True fake: scaffold gap size wrong estimation (local) 95947863 95950766 332540 335484 NC_000014.9 scf17 98.2 True fake: scaffold gap size wrong estimation (local) 95951066 95954067 336738 339741 NC_000014.9 scf17 99.67 True fake: scaffold gap size wrong estimation (local) 95953986 95957508 340450 343974 NC_000014.9 scf17 99.72 True fake: scaffold gap size wrong estimation (local) 95957411 95960151 344624 347364 NC_000014.9 scf17 99.96 True fake: scaffold gap size wrong estimation (local) 95960276 95966427 348266 354417 NC_000014.9 scf17 99.79 True fake: scaffold gap size wrong estimation (local) 95966335 95972274 355117 362738 NC_000014.9 scf17 98.86 True fake: scaffold gap size wrong estimation (local) 95976331 95977907 369367 370968 NC_000014.9 scf17 98.25 True fake: scaffold gap size wrong estimation (local) 95978748 95981860 372584 375695 NC_000014.9 scf17 99.58 True fake: scaffold gap size wrong estimation (local) 95981766 95993653 376380 388238 NC_000014.9 scf17 99.38 True fake: scaffold gap size wrong estimation (local) 95993556 95997156 388917 392517 NC_000014.9 scf17 99.61 True fake: scaffold gap size wrong estimation (local) 95997059 96002966 393268 399983 NC_000014.9 scf17 99.18 True fake: scaffold gap size wrong estimation (local) 96002868 96005130 401529 403863 NC_000014.9 scf17 96.75 True fake: scaffold gap size wrong estimation (local) 96005031 96008906 404644 408549 NC_000014.9 scf17 98.98 True fake: scaffold gap size wrong estimation (local) 96008807 96010988 409238 411419 NC_000014.9 scf17 99.91 True fake: scaffold gap size wrong estimation (local) 96010892 96018177 412248 419529 NC_000014.9 scf17 99.75 True fake: scaffold gap size wrong estimation (local) 96018113 96041205 420227 444039 NC_000014.9 scf17 99.6 True fake: scaffold gap size wrong estimation (local) 96041106 96048106 444712 451712 NC_000014.9 scf17 99.97 True fake: scaffold gap size wrong estimation (local) 96048016 96049067 452424 453475 NC_000014.9 scf17 99.9 True fake: scaffold gap size wrong estimation (local) 96049326 96064039 453571 469017 NC_000014.9 scf17 99.01 True fake: scaffold gap size wrong estimation (local) 96064380 96067585 470053 473259 NC_000014.9 scf17 99.91 True fake: scaffold gap size wrong estimation (local) 96067492 96113848 473894 522543 NC_000014.9 scf17 99.6 True fake: scaffold gap size wrong estimation (local) 96113956 96115849 523585 525478 NC_000014.9 scf17 100.0 True fake: scaffold gap size wrong estimation (local) 96116120 96128870 526510 539260 NC_000014.9 scf17 100.0 True fake: scaffold gap size wrong estimation (local) 96128779 96134819 539953 545996 NC_000014.9 scf17 99.93 True fake: scaffold gap size wrong estimation (local) 96134726 96138722 546680 550627 NC_000014.9 scf17 98.47 True fake: scaffold gap size wrong estimation (local) 96138627 96146974 551378 559725 NC_000014.9 scf17 99.88 True fake: scaffold gap size wrong estimation (local) 96146876 96153550 560367 567783 NC_000014.9 scf17 97.64 True fake: scaffold gap size wrong estimation (local) 96153456 96154591 568638 569773 NC_000014.9 scf17 99.38 True local misassembly 96154842 96155601 569774 570533 NC_000014.9 scf17 99.34 True fake: scaffold gap size wrong estimation (local) 96156392 96157827 572283 573718 NC_000014.9 scf17 99.86 True fake: scaffold gap size wrong estimation (local) 96159135 96164914 577191 582970 NC_000014.9 scf17 99.9 True fake: scaffold gap size wrong estimation (local) 96164825 96168331 583626 587132 NC_000014.9 scf17 99.94 True CONTIG scf17 587132 correct 105474798 105477661 2943 80 NC_000014.9 scf18 99.97 True fake: scaffold gap size wrong estimation (local) 105464885 105474620 13630 3895 NC_000014.9 scf18 99.53 True fake: scaffold gap size wrong estimation (local) 105462756 105464979 16586 14363 NC_000014.9 scf18 99.91 True fake: scaffold gap size wrong estimation (local) 105460126 105462561 20114 17639 NC_000014.9 scf18 98.34 True fake: scaffold gap size wrong estimation (local) 105454690 105458867 25736 21559 NC_000014.9 scf18 99.81 True fake: scaffold gap size wrong estimation (local) 105451845 105454767 29401 26479 NC_000014.9 scf18 99.9 True relocation, inconsistency = 52158590 53284917 53293229 37739 29427 NC_000014.9 scf18 99.88 True local misassembly 53283709 53284916 39742 38535 NC_000014.9 scf18 99.83 True relocation, inconsistency = -52160303 105442761 105444011 41046 39743 NC_000014.9 scf18 95.32 True local misassembly 105441750 105442621 42302 41431 NC_000014.9 scf18 99.54 True fake: not a misassembly (possible transposable element) 53279169 53281779 44930 42416 NC_000014.9 scf18 96.17 True fake: not a misassembly (possible transposable element) 105434717 105440567 50819 44931 NC_000014.9 scf18 97.79 True fake: not a misassembly (possible transposable element) 53271833 53274102 53089 50820 NC_000014.9 scf18 99.87 True fake: not a misassembly (possible transposable element) 105432439 105433274 53925 53090 NC_000014.9 scf18 99.76 True fake: scaffold gap size wrong estimation (local) 105429753 105431842 57452 55363 NC_000014.9 scf18 99.76 True fake: scaffold gap size wrong estimation (local) 105426377 105429400 61614 58592 NC_000014.9 scf18 99.87 True fake: scaffold gap size wrong estimation (local) 105424718 105426468 64129 62379 NC_000014.9 scf18 99.94 True local misassembly 105423293 105424443 65280 64130 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 105421116 105423210 68513 66419 NC_000014.9 scf18 99.95 True fake: scaffold gap size wrong estimation (local) 105417535 105419809 73386 71112 NC_000014.9 scf18 99.87 True fake: scaffold gap size wrong estimation (local) 105414874 105417169 76881 74595 NC_000014.9 scf18 99.56 True fake: scaffold gap size wrong estimation (local) 105410174 105414943 82404 77635 NC_000014.9 scf18 99.92 True fake: scaffold gap size wrong estimation (local) 105407311 105410235 86171 83138 NC_000014.9 scf18 96.18 True fake: scaffold gap size wrong estimation (local) 105402757 105407086 91687 87358 NC_000014.9 scf18 99.84 True fake: scaffold gap size wrong estimation (local) 105396673 105402630 98443 92596 NC_000014.9 scf18 98.05 True fake: scaffold gap size wrong estimation (local) 105372684 105396517 123978 99398 NC_000014.9 scf18 99.84 True fake: scaffold gap size wrong estimation (local) 105370755 105372781 126662 124636 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 105366022 105370595 132210 127637 NC_000014.9 scf18 99.96 True relocation, inconsistency = 83001043 22356302 22364978 132211 140888 NC_000014.9 scf18 99.91 True relocation, scaffold gap is present, inconsistency = 82991759 105356913 105359540 143691 141064 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 105353131 105356747 148254 144638 NC_000014.9 scf18 99.86 True relocation, scaffold gap is present, inconsistency = 82945592 22370086 22406769 149024 185716 NC_000014.9 scf18 99.79 True fake: not a misassembly (possible transposable element) 105319043 105321990 188664 185717 NC_000014.9 scf18 99.97 True fake: not a misassembly (possible transposable element) 22408969 22411030 188665 190718 NC_000014.9 scf18 99.37 True fake: not a misassembly (possible transposable element) 105314933 105317764 193550 190719 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22413265 22415643 194301 196679 NC_000014.9 scf18 99.83 True fake: not a misassembly (possible transposable element) 105311041 105312597 198236 196680 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22416433 22419920 198237 201723 NC_000014.9 scf18 99.86 True fake: not a misassembly (possible transposable element) 105306860 105308511 203465 201814 NC_000014.9 scf18 99.94 True fake: not a misassembly (possible transposable element) 22420905 22423177 203466 205738 NC_000014.9 scf18 99.74 True fake: not a misassembly (possible transposable element) 105303387 105305499 207851 205739 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22424536 22436261 207852 220326 NC_000014.9 scf18 98.07 True fake: not a misassembly (possible transposable element) 105291779 105293703 222251 220327 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22437427 22440837 222265 225675 NC_000014.9 scf18 99.82 True fake: scaffold gap size wrong estimation (local) 22440739 22441247 226323 226831 NC_000014.9 scf18 100.0 True indel: indel (<= 5bp) 22441248 22447337 226833 232922 NC_000014.9 scf18 99.85 True fake: scaffold gap size wrong estimation (local) 22447338 22452254 233699 238615 NC_000014.9 scf18 99.92 True fake: not a misassembly (possible transposable element) 105277487 105279543 240672 238616 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22453535 22461123 240674 248276 NC_000014.9 scf18 99.78 True fake: not a misassembly (possible transposable element) 105270523 105271074 248828 248277 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22461237 22462578 249174 250512 NC_000014.9 scf18 99.7 True fake: not a misassembly (possible transposable element) 105265726 105269654 254445 250517 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22465586 22468277 254446 257137 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 105263917 105264692 258072 257297 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22468255 22468895 258073 258713 NC_000014.9 scf18 99.55 True local misassembly 22469106 22471166 258714 260774 NC_000014.9 scf18 99.9 True fake: not a misassembly (possible transposable element) 105258756 105262096 264200 260860 NC_000014.9 scf18 100.0 True fake: not a misassembly (possible transposable element) 22473754 22489829 264201 280276 NC_000014.9 scf18 99.96 True relocation, inconsistency = 82753178 105243048 105244977 282246 280317 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 105240862 105242753 285358 283467 NC_000014.9 scf18 100.0 True relocation, inconsistency = 82744376 22493268 22496485 285359 288576 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 22496388 22498280 289281 291173 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 22498181 22504524 291837 298181 NC_000014.9 scf18 99.86 True fake: scaffold gap size wrong estimation (local) 22504847 22506029 299284 300466 NC_000014.9 scf18 99.32 True local misassembly 22506177 22506771 300467 301061 NC_000014.9 scf18 99.16 True indel: indel (> 5bp) 22506772 22507921 301078 302227 NC_000014.9 scf18 99.3 True fake: scaffold gap size wrong estimation (local) 22507922 22509814 303142 305034 NC_000014.9 scf18 99.89 True local misassembly 22510025 22510849 305035 305859 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 22510863 22523032 306797 319677 NC_000014.9 scf18 99.92 True fake: scaffold gap size wrong estimation (local) 22522937 22526231 320305 323511 NC_000014.9 scf18 97.24 True fake: scaffold gap size wrong estimation (local) 22526140 22527797 324158 325815 NC_000014.9 scf18 99.94 True fake: scaffold gap size wrong estimation (local) 22528060 22534659 326914 333513 NC_000014.9 scf18 99.92 True fake: scaffold gap size wrong estimation (local) 22534572 22538223 334214 337864 NC_000014.9 scf18 99.86 True fake: scaffold gap size wrong estimation (local) 22538126 22543696 338562 344132 NC_000014.9 scf18 99.93 True fake: scaffold gap size wrong estimation (local) 22543603 22547010 344814 348221 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 22546914 22548620 348854 350560 NC_000014.9 scf18 100.0 True fake: scaffold gap size wrong estimation (local) 22548820 22554187 351566 356940 NC_000014.9 scf18 99.41 True fake: scaffold gap size wrong estimation (local) 22554443 22554950 358037 358544 NC_000014.9 scf18 99.61 True local misassembly 22555211 22556921 358545 360255 NC_000014.9 scf18 99.88 True indel: indel (<= 5bp) 22557314 22557892 360646 361224 NC_000014.9 scf18 99.65 True indel: indel (> 5bp) 22557893 22559049 361231 362387 NC_000014.9 scf18 99.91 True fake: scaffold gap size wrong estimation (local) 22559066 22559858 363328 364120 NC_000014.9 scf18 99.5 True local misassembly 22560078 22561835 364218 365975 NC_000014.9 scf18 99.54 True fake: scaffold gap size wrong estimation (local) 22561742 22562552 366761 367571 NC_000014.9 scf18 99.88 True fake: scaffold gap size wrong estimation (local) 22563327 22570754 368142 378442 NC_000014.9 scf18 95.78 True fake: scaffold gap size wrong estimation (local) 22571822 22572550 380437 381165 NC_000014.9 scf18 99.31 True fake: scaffold gap size wrong estimation (local) 22573710 22575748 383198 385236 NC_000014.9 scf18 99.66 True fake: scaffold gap size wrong estimation (local) 22577234 22578278 387467 388511 NC_000014.9 scf18 99.81 True local misassembly 22575756 22577316 389373 390947 NC_000014.9 scf18 98.79 True fake: scaffold gap size wrong estimation (local) 22578481 22581767 393059 396347 NC_000014.9 scf18 99.7 True fake: scaffold gap size wrong estimation (local) 22582967 22584083 398420 399536 NC_000014.9 scf18 99.82 True fake: scaffold gap size wrong estimation (local) 22583994 22586128 400547 402681 NC_000014.9 scf18 99.91 True fake: scaffold gap size wrong estimation (local) 22586282 22587758 403789 405265 NC_000014.9 scf18 99.93 True fake: scaffold gap size wrong estimation (local) 22588009 22590698 406417 409106 NC_000014.9 scf18 99.96 True CONTIG scf18 409106 misassembled 51874425 51875943 9 1527 NC_000014.9 scf19 99.93 True fake: scaffold gap size wrong estimation (local) 51875855 51881041 2291 7478 NC_000014.9 scf19 99.94 True fake: scaffold gap size wrong estimation (local) 51880968 51882881 8253 10166 NC_000014.9 scf19 100.0 True fake: scaffold gap size wrong estimation (local) 51882997 51886273 11135 14575 NC_000014.9 scf19 97.09 True fake: scaffold gap size wrong estimation (local) 51886197 51895800 15536 25861 NC_000014.9 scf19 99.24 True fake: scaffold gap size wrong estimation (local) 51895703 51902915 26532 33741 NC_000014.9 scf19 99.89 True fake: scaffold gap size wrong estimation (local) 51902817 51906773 34398 38354 NC_000014.9 scf19 99.92 True fake: scaffold gap size wrong estimation (local) 51906946 51910229 39350 42912 NC_000014.9 scf19 97.65 True fake: scaffold gap size wrong estimation (local) 51910134 51917952 43726 51543 NC_000014.9 scf19 99.9 True fake: scaffold gap size wrong estimation (local) 51917871 51925800 52283 60125 NC_000014.9 scf19 98.87 True fake: scaffold gap size wrong estimation (local) 51925789 51927645 60943 62799 NC_000014.9 scf19 100.0 True fake: scaffold gap size wrong estimation (local) 51928703 51932047 64761 68131 NC_000014.9 scf19 98.93 True fake: scaffold gap size wrong estimation (local) 51932285 51937722 69205 75417 NC_000014.9 scf19 99.87 True fake: scaffold gap size wrong estimation (local) 51937645 51947452 76213 86751 NC_000014.9 scf19 99.22 True fake: scaffold gap size wrong estimation (local) 51947353 51948887 87522 89056 NC_000014.9 scf19 99.67 True fake: scaffold gap size wrong estimation (local) 51949123 51956388 90158 97423 NC_000014.9 scf19 99.83 True fake: scaffold gap size wrong estimation (local) 51956338 51960452 98103 103115 NC_000014.9 scf19 99.65 True fake: scaffold gap size wrong estimation (local) 51960359 51971421 103825 115671 NC_000014.9 scf19 99.49 True fake: scaffold gap size wrong estimation (local) 51971324 51973105 116351 118132 NC_000014.9 scf19 100.0 True fake: scaffold gap size wrong estimation (local) 51973244 52009853 119134 155736 NC_000014.9 scf19 99.92 True fake: scaffold gap size wrong estimation (local) 52009806 52037903 156468 186210 NC_000014.9 scf19 99.39 True fake: scaffold gap size wrong estimation (local) 52037807 52038727 187610 188530 NC_000014.9 scf19 99.78 True fake: scaffold gap size wrong estimation (local) 52038633 52046156 189409 196928 NC_000014.9 scf19 99.77 True fake: scaffold gap size wrong estimation (local) 52046323 52056605 197752 208043 NC_000014.9 scf19 99.73 True fake: scaffold gap size wrong estimation (local) 52056617 52057550 209283 210216 NC_000014.9 scf19 99.46 True local misassembly 52058052 52060380 210217 212545 NC_000014.9 scf19 99.91 True fake: scaffold gap size wrong estimation (local) 52060477 52065542 213407 218472 NC_000014.9 scf19 99.96 True fake: scaffold gap size wrong estimation (local) 52065962 52073980 219610 227622 NC_000014.9 scf19 99.69 True fake: scaffold gap size wrong estimation (local) 52073886 52087685 228334 242132 NC_000014.9 scf19 99.72 True fake: scaffold gap size wrong estimation (local) 52087638 52109440 242828 264615 NC_000014.9 scf19 99.8 True fake: scaffold gap size wrong estimation (local) 52109347 52122857 265366 279683 NC_000014.9 scf19 99.04 True fake: scaffold gap size wrong estimation (local) 52122811 52128075 281184 286492 NC_000014.9 scf19 99.0 True fake: scaffold gap size wrong estimation (local) 52128264 52130357 287525 289618 NC_000014.9 scf19 99.71 True fake: scaffold gap size wrong estimation (local) 52130266 52136777 290297 297650 NC_000014.9 scf19 99.02 True fake: scaffold gap size wrong estimation (local) 52136997 52138758 298820 300581 NC_000014.9 scf19 99.83 True fake: scaffold gap size wrong estimation (local) 52140455 52147831 302846 311872 NC_000014.9 scf19 99.2 True fake: scaffold gap size wrong estimation (local) 52147751 52159686 312531 325996 NC_000014.9 scf19 98.9 True fake: scaffold gap size wrong estimation (local) 52159973 52160613 327308 327924 NC_000014.9 scf19 95.63 True CONTIG scf19 327944 correct 86590898 86591574 677 1 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 86583015 86590968 10120 1401 NC_000014.9 scf20 99.62 True fake: scaffold gap size wrong estimation (local) 86575350 86582432 18527 11445 NC_000014.9 scf20 99.99 True fake: scaffold gap size wrong estimation (local) 86563525 86575447 31121 19199 NC_000014.9 scf20 99.98 True fake: scaffold gap size wrong estimation (local) 86549340 86563586 46754 31753 NC_000014.9 scf20 99.66 True relocation, inconsistency = 862796 85681797 85686543 52309 46755 NC_000014.9 scf20 98.85 True fake: scaffold gap size wrong estimation (local) 85679926 85681644 55081 53363 NC_000014.9 scf20 99.07 True local misassembly 85679176 85679683 55589 55082 NC_000014.9 scf20 99.41 True fake: scaffold gap size wrong estimation (local) 85672622 85679254 63942 56506 NC_000014.9 scf20 99.34 True fake: scaffold gap size wrong estimation (local) 85659210 85672717 78161 64614 NC_000014.9 scf20 99.51 True fake: scaffold gap size wrong estimation (local) 85657589 85659302 80563 78852 NC_000014.9 scf20 99.71 True fake: scaffold gap size wrong estimation (local) 85645255 85657663 95052 81476 NC_000014.9 scf20 99.52 True fake: scaffold gap size wrong estimation (local) 85640041 85645347 101751 95777 NC_000014.9 scf20 95.23 True fake: scaffold gap size wrong estimation (local) 85633802 85639866 109572 102760 NC_000014.9 scf20 99.36 True fake: scaffold gap size wrong estimation (local) 85632276 85633607 111955 110625 NC_000014.9 scf20 99.7 True fake: scaffold gap size wrong estimation (local) 85631108 85631969 112968 112107 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 85612927 85631138 132810 113642 NC_000014.9 scf20 99.74 True fake: not a misassembly (possible transposable element) 24503748 24505207 133137 134597 NC_000014.9 scf20 99.6 True fake: not a misassembly (possible transposable element) 85606661 85611965 139902 134598 NC_000014.9 scf20 99.96 True fake: not a misassembly (possible transposable element) 24511037 24513792 139903 142658 NC_000014.9 scf20 99.78 True fake: not a misassembly (possible transposable element) 85599169 85605530 149270 142877 NC_000014.9 scf20 99.39 True fake: not a misassembly (possible transposable element) 24518440 24519467 149271 150299 NC_000014.9 scf20 99.13 True fake: not a misassembly (possible transposable element) 85593947 85598930 155229 150300 NC_000014.9 scf20 98.86 True fake: not a misassembly (possible transposable element) 24523773 24526467 155230 157924 NC_000014.9 scf20 99.78 True fake: not a misassembly (possible transposable element) 85578848 85591974 171080 157925 NC_000014.9 scf20 99.5 True fake: scaffold gap size wrong estimation (local) 85578235 85578938 172491 171788 NC_000014.9 scf20 99.72 True fake: scaffold gap size wrong estimation (local) 85570865 85578124 180671 173412 NC_000014.9 scf20 99.92 True fake: not a misassembly (possible transposable element) 73293598 73294836 180748 181986 NC_000014.9 scf20 99.92 True fake: not a misassembly (possible transposable element) 85567637 85570213 184563 181987 NC_000014.9 scf20 99.84 True relocation, inconsistency = 17510485 103080777 103081559 184642 185424 NC_000014.9 scf20 99.74 True relocation, scaffold gap is present, inconsistency = -29785120 73297040 73298140 186025 187125 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85562564 85566577 191155 187133 NC_000014.9 scf20 99.6 True fake: not a misassembly (possible transposable element) 73301339 73302446 191156 192261 NC_000014.9 scf20 99.73 True relocation, inconsistency = 12258703 85561152 85562226 193336 192262 NC_000014.9 scf20 99.81 True relocation, inconsistency = 17525408 103087635 103088833 193337 194535 NC_000014.9 scf20 99.83 True fake: not a misassembly (possible transposable element) 73303972 73307208 194536 197776 NC_000014.9 scf20 99.78 True fake: not a misassembly (possible transposable element) 103091244 103092723 197777 199256 NC_000014.9 scf20 99.8 True relocation, inconsistency = 17534453 85547396 85556790 208647 199257 NC_000014.9 scf20 99.81 True relocation, inconsistency = 12229843 73315908 73317552 208648 210292 NC_000014.9 scf20 99.94 True relocation, inconsistency = 29783401 103100954 103103371 210293 212710 NC_000014.9 scf20 99.92 True relocation, inconsistency = 17556458 85535898 85544460 221299 212746 NC_000014.9 scf20 99.77 True relocation, inconsistency = 18096949 67438286 67438948 221300 221961 NC_000014.9 scf20 99.85 True fake: not a misassembly (possible transposable element) 103111431 103114681 221962 225212 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67441515 67443942 225221 227648 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85526747 85531368 232270 227649 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67446938 67448140 232271 233473 NC_000014.9 scf20 100.0 True relocation, inconsistency = 5887650 73335791 73342834 233474 240517 NC_000014.9 scf20 99.89 True relocation, inconsistency = 29783132 103126338 103127061 240889 241612 NC_000014.9 scf20 100.0 True relocation, inconsistency = -35674049 67453013 67456647 241613 245247 NC_000014.9 scf20 100.0 True relocation, inconsistency = 18053484 85510132 85515286 250394 245248 NC_000014.9 scf20 99.65 True relocation, inconsistency = 17619817 103135104 103136569 250395 251859 NC_000014.9 scf20 99.86 True relocation, inconsistency = -35674885 67461685 67463587 251860 253762 NC_000014.9 scf20 100.0 True relocation, inconsistency = 18042695 85506318 85507387 254867 253798 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103138779 103144064 254879 260164 NC_000014.9 scf20 99.55 True fake: not a misassembly (possible transposable element) 85495863 85502587 266898 260174 NC_000014.9 scf20 99.96 True relocation, inconsistency = 18019396 67473806 67476466 266899 269559 NC_000014.9 scf20 99.96 True relocation, inconsistency = 5889637 73366104 73367315 269560 270771 NC_000014.9 scf20 99.92 True relocation, inconsistency = 12124439 85491755 85493302 272319 270772 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67478572 67479274 272445 273147 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85488110 85491445 276705 273370 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67482055 67486409 276706 281060 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85476265 85485336 290118 281061 NC_000014.9 scf20 99.76 True relocation, inconsistency = 17980722 67493959 67495540 290119 291700 NC_000014.9 scf20 100.0 True relocation, inconsistency = 35674363 103169904 103176298 291701 298095 NC_000014.9 scf20 99.94 True relocation, inconsistency = 17700124 85460165 85469779 307697 298096 NC_000014.9 scf20 99.81 True fake: not a misassembly (possible transposable element) 73397954 73399509 307698 309243 NC_000014.9 scf20 99.23 True fake: not a misassembly (possible transposable element) 85453355 85459362 315243 309244 NC_000014.9 scf20 99.77 True relocation, inconsistency = 17931194 67514547 67522160 315244 322845 NC_000014.9 scf20 99.4 True relocation, inconsistency = 17923936 85446097 85447266 324015 322846 NC_000014.9 scf20 99.83 True relocation, inconsistency = 12033540 73409993 73412556 324016 326580 NC_000014.9 scf20 99.73 True relocation, inconsistency = -5887386 67525171 67527437 326581 328847 NC_000014.9 scf20 99.82 True relocation, scaffold gap is present, inconsistency = 17913721 85441176 85442833 330522 328865 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103201754 103205657 330523 334426 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85433977 85438776 339649 334850 NC_000014.9 scf20 99.96 True relocation, inconsistency = 17770490 103209267 103210929 339650 341313 NC_000014.9 scf20 99.94 True indel: indel (> 5bp) 103211081 103211963 341505 342387 NC_000014.9 scf20 99.89 True relocation, inconsistency = 17779165 85430490 85431915 343813 342388 NC_000014.9 scf20 100.0 True relocation, inconsistency = 17881954 67538312 67548535 343814 354036 NC_000014.9 scf20 99.9 True fake: not a misassembly (possible transposable element) 85421109 85424030 357038 354118 NC_000014.9 scf20 99.9 True fake: not a misassembly (possible transposable element) 67550798 67552610 357039 358851 NC_000014.9 scf20 100.0 True relocation, inconsistency = 17864875 85417486 85420085 361448 358852 NC_000014.9 scf20 99.77 True relocation, inconsistency = 17807012 103227099 103234279 361450 368629 NC_000014.9 scf20 99.76 True relocation, inconsistency = 17815896 85399110 85411202 380710 368630 NC_000014.9 scf20 99.82 True relocation, inconsistency = 17817678 67570447 67581431 380711 391699 NC_000014.9 scf20 99.85 True relocation, inconsistency = 7033810 74615242 74623418 391700 399876 NC_000014.9 scf20 99.96 True relocation, inconsistency = 10753022 85376441 85381696 405132 399877 NC_000014.9 scf20 99.96 True relocation, inconsistency = 17879891 103261607 103264622 405152 408167 NC_000014.9 scf20 99.97 True relocation, inconsistency = -29786156 73478670 73479256 408371 408957 NC_000014.9 scf20 100.0 True relocation, inconsistency = 11892710 85371967 85373361 410352 408958 NC_000014.9 scf20 100.0 True relocation, inconsistency = 10738644 74630965 74633322 410353 412710 NC_000014.9 scf20 99.83 True fake: not a misassembly (possible transposable element) 103268046 103270568 412711 415233 NC_000014.9 scf20 99.96 True fake: not a misassembly (possible transposable element) 74635123 74635957 415234 416068 NC_000014.9 scf20 100.0 True relocation, inconsistency = -7037677 67598732 67603895 416520 421694 NC_000014.9 scf20 99.38 True relocation, inconsistency = 17749317 85353213 85363837 432319 421695 NC_000014.9 scf20 99.93 True relocation, inconsistency = 10696255 74649895 74656957 432320 439382 NC_000014.9 scf20 99.96 True relocation, inconsistency = 10687082 85344041 85347595 442938 439384 NC_000014.9 scf20 99.94 True relocation, inconsistency = 17722351 67620687 67621687 442939 443939 NC_000014.9 scf20 100.0 True relocation, inconsistency = 7038149 74659837 74664473 443940 448576 NC_000014.9 scf20 99.91 True relocation, inconsistency = 10654105 85318594 85339926 469924 448592 NC_000014.9 scf20 99.97 True relocation, inconsistency = 17970767 103311101 103313339 470332 472570 NC_000014.9 scf20 99.87 True relocation, inconsistency = -28628736 74684677 74688045 472644 476012 NC_000014.9 scf20 100.0 True relocation, inconsistency = 10621173 85309230 85313245 480037 476024 NC_000014.9 scf20 99.8 True relocation, inconsistency = 17656338 67650779 67652891 480038 482150 NC_000014.9 scf20 100.0 True relocation, inconsistency = 7039643 74692535 74694995 482151 484611 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85300724 85305425 489313 484612 NC_000014.9 scf20 99.96 True fake: not a misassembly (possible transposable element) 74697920 74698875 489314 490269 NC_000014.9 scf20 100.0 True relocation, inconsistency = 10599407 85298608 85300209 492196 490595 NC_000014.9 scf20 99.94 True relocation, inconsistency = 17637308 67659735 67661299 492197 493761 NC_000014.9 scf20 100.0 True relocation, inconsistency = 35667720 103329039 103329670 493781 494412 NC_000014.9 scf20 100.0 True relocation, inconsistency = 18031778 85296189 85297260 495484 494413 NC_000014.9 scf20 99.81 True relocation, inconsistency = 10591055 74702297 74705133 495485 498321 NC_000014.9 scf20 99.93 True relocation, inconsistency = 28627183 103332317 103332899 498322 498904 NC_000014.9 scf20 100.0 True relocation, inconsistency = -29722045 73611150 73614902 499200 502945 NC_000014.9 scf20 99.73 True relocation, inconsistency = 11673805 85289113 85290970 505208 503351 NC_000014.9 scf20 100.0 True relocation, inconsistency = 10578075 74710441 74711037 505209 505805 NC_000014.9 scf20 100.0 True relocation, inconsistency = -7041457 67669607 67672477 505832 508702 NC_000014.9 scf20 99.83 True relocation, inconsistency = 35668352 103340870 103345465 508743 513338 NC_000014.9 scf20 99.96 True relocation, inconsistency = 18059132 85278329 85281737 516747 513339 NC_000014.9 scf20 99.88 True relocation, inconsistency = 17598691 67677970 67679637 516748 518415 NC_000014.9 scf20 99.94 True fake: not a misassembly (possible transposable element) 103349747 103351983 519118 521354 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67681773 67687712 521355 527292 NC_000014.9 scf20 99.8 True relocation, inconsistency = 17580061 85267774 85269308 528827 527293 NC_000014.9 scf20 99.93 True fake: not a misassembly (possible transposable element) 73635578 73637655 529064 531141 NC_000014.9 scf20 99.95 True fake: not a misassembly (possible transposable element) 85264932 85266166 532434 531200 NC_000014.9 scf20 99.68 True relocation, inconsistency = 17571118 67691346 67693733 532515 534902 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103362116 103367855 535357 541070 NC_000014.9 scf20 99.39 True fake: not a misassembly (possible transposable element) 67698353 67699167 541071 541885 NC_000014.9 scf20 99.75 True relocation, inconsistency = 17556286 85255464 85257776 544208 541896 NC_000014.9 scf20 99.91 True local misassembly 85250110 85255343 550331 545098 NC_000014.9 scf20 99.92 True relocation, inconsistency = 17542596 67706139 67707513 550332 551706 NC_000014.9 scf20 99.78 True relocation, inconsistency = 5946536 73654050 73654626 551707 552283 NC_000014.9 scf20 100.0 True relocation, inconsistency = 11593206 85247833 85248964 553415 552284 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103376193 103377368 553416 554591 NC_000014.9 scf20 99.91 True fake: not a misassembly (possible transposable element) 85240585 85247152 561500 554931 NC_000014.9 scf20 99.83 True fake: not a misassembly (possible transposable element) 73661666 73663223 561501 563058 NC_000014.9 scf20 99.87 True fake: not a misassembly (possible transposable element) 85237799 85238703 564940 564036 NC_000014.9 scf20 99.89 True relocation, inconsistency = 18146723 103385427 103387576 564941 567090 NC_000014.9 scf20 99.91 True relocation, inconsistency = -35669124 67718453 67730892 567091 579525 NC_000014.9 scf20 99.83 True relocation, inconsistency = 5943048 73674369 73675230 579954 580815 NC_000014.9 scf20 99.77 True relocation, inconsistency = 11550672 85225903 85226820 581733 580816 NC_000014.9 scf20 99.89 True fake: not a misassembly (possible transposable element) 103398213 103399599 581814 583200 NC_000014.9 scf20 99.86 True fake: not a misassembly (possible transposable element) 85223250 85224849 585168 583570 NC_000014.9 scf20 99.88 True fake: not a misassembly (possible transposable element) 103401275 103402418 585683 586826 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85220346 85222443 588924 586827 NC_000014.9 scf20 99.9 True fake: not a misassembly (possible transposable element) 67737819 67744771 588925 595871 NC_000014.9 scf20 99.7 True fake: not a misassembly (possible transposable element) 85213126 85214150 596900 595876 NC_000014.9 scf20 100.0 True relocation, inconsistency = 11525435 73686353 73687689 596901 598237 NC_000014.9 scf20 100.0 True relocation, inconsistency = -5941273 67746417 67751763 598238 603585 NC_000014.9 scf20 99.89 True relocation, inconsistency = 17455727 85207491 85208017 604112 603586 NC_000014.9 scf20 99.81 True relocation, inconsistency = 3739371 81466779 81467881 604351 605450 NC_000014.9 scf20 99.55 True fake: not a misassembly (possible transposable element) 67752888 67757851 605468 610415 NC_000014.9 scf20 99.66 True fake: not a misassembly (possible transposable element) 81472264 81480434 610493 618675 NC_000014.9 scf20 99.82 True relocation, inconsistency = -13715222 67765213 67774319 618676 627781 NC_000014.9 scf20 99.79 True fake: not a misassembly (possible transposable element) 81487127 81489522 627782 630177 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 67775943 67776977 630179 631213 NC_000014.9 scf20 99.71 True relocation, inconsistency = 17407863 85184841 85187267 633640 631214 NC_000014.9 scf20 99.96 True fake: not a misassembly (possible transposable element) 103438743 103439517 634120 634894 NC_000014.9 scf20 99.87 True fake: not a misassembly (possible transposable element) 85175317 85184386 643963 634895 NC_000014.9 scf20 99.97 True fake: not a misassembly (possible transposable element) 67788104 67792722 643971 648589 NC_000014.9 scf20 99.89 True fake: not a misassembly (possible transposable element) 85162642 85171463 657411 648590 NC_000014.9 scf20 99.86 True relocation, inconsistency = 17359191 67800811 67803450 657412 660051 NC_000014.9 scf20 99.85 True relocation, inconsistency = 13710697 81514148 81518441 660052 664345 NC_000014.9 scf20 99.93 True fake: not a misassembly (possible transposable element) 85151798 85156484 669087 664402 NC_000014.9 scf20 99.94 True fake: not a misassembly (possible transposable element) 81522385 81527469 669088 674171 NC_000014.9 scf20 99.96 True relocation, inconsistency = 3613136 85140606 85147947 681513 674172 NC_000014.9 scf20 99.97 True fake: not a misassembly (possible transposable element) 81534126 81536775 681514 684163 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 85124916 85138685 697928 684164 NC_000014.9 scf20 99.91 True fake: not a misassembly (possible transposable element) 103488614 103493944 698157 703485 NC_000014.9 scf20 99.85 True fake: not a misassembly (possible transposable element) 85118593 85120174 705067 703486 NC_000014.9 scf20 99.94 True relocation, inconsistency = -2006293 87119036 87124885 710918 705068 NC_000014.9 scf20 99.93 True fake: not a misassembly (possible transposable element) 103500069 103504710 711152 715793 NC_000014.9 scf20 99.87 True fake: not a misassembly (possible transposable element) 87110608 87114905 720091 715794 NC_000014.9 scf20 99.91 True fake: not a misassembly (possible transposable element) 67850064 67855361 720092 725389 NC_000014.9 scf20 99.94 True fake: not a misassembly (possible transposable element) 87094153 87106061 737298 725390 NC_000014.9 scf20 99.97 True relocation, inconsistency = 16415196 103521258 103523243 737299 739284 NC_000014.9 scf20 99.95 True fake: not a misassembly (possible transposable element) 85084983 85088489 742805 739295 NC_000014.9 scf20 99.86 True fake: not a misassembly (possible transposable element) 103525997 103533122 742806 749931 NC_000014.9 scf20 99.86 True relocation, inconsistency = 16442964 87072410 87083032 760545 749932 NC_000014.9 scf20 99.87 True relocation, inconsistency = 16458363 103541396 103548099 760546 767249 NC_000014.9 scf20 99.93 True relocation, inconsistency = 18477757 85034599 85063638 796283 767250 NC_000014.9 scf20 99.92 True relocation, inconsistency = -2007613 87033146 87042211 805349 796284 NC_000014.9 scf20 99.87 True fake: not a misassembly (possible transposable element) 103578797 103579568 805350 806121 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 87031884 87032936 807387 806335 NC_000014.9 scf20 100.0 True relocation, inconsistency = 16547116 103580053 103582733 807388 810068 NC_000014.9 scf20 99.96 True fake: scaffold gap size wrong estimation (local) 103582734 103583467 810892 811625 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 87022446 87028366 818313 811626 NC_000014.9 scf20 98.75 True fake: not a misassembly (possible transposable element) 103588698 103589800 818812 819914 NC_000014.9 scf20 99.91 True fake: not a misassembly (possible transposable element) 87016374 87021587 825125 819915 NC_000014.9 scf20 99.9 True fake: not a misassembly (possible transposable element) 103592060 103593984 825253 827177 NC_000014.9 scf20 100.0 True relocation, inconsistency = 16576954 86987159 87015056 855953 827227 NC_000014.9 scf20 99.44 True fake: scaffold gap size wrong estimation (local) 86984513 86987241 859397 856669 NC_000014.9 scf20 99.96 True fake: not a misassembly (possible transposable element) 103620672 103621569 859850 860747 NC_000014.9 scf20 99.89 True fake: not a misassembly (possible transposable element) 86982475 86983985 862258 860748 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103623281 103624656 863152 864527 NC_000014.9 scf20 99.85 True fake: not a misassembly (possible transposable element) 86980254 86981139 865413 864528 NC_000014.9 scf20 99.89 True fake: not a misassembly (possible transposable element) 103624854 103626925 866697 868768 NC_000014.9 scf20 99.9 True fake: not a misassembly (possible transposable element) 86976481 86977405 869693 868769 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103626972 103631857 869694 874592 NC_000014.9 scf20 99.61 True fake: not a misassembly (possible transposable element) 86970100 86972477 876970 874593 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 103633525 103634100 876971 877546 NC_000014.9 scf20 100.0 True fake: not a misassembly (possible transposable element) 86966909 86969964 880884 877829 NC_000014.9 scf20 100.0 True relocation, inconsistency = 16665977 103635942 103636879 880885 881822 NC_000014.9 scf20 99.68 True fake: scaffold gap size wrong estimation (local) 103636844 103640415 882530 885967 NC_000014.9 scf20 96.08 True relocation, inconsistency = 16673525 86959825 86963318 889461 885968 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 86949119 86959920 900887 890088 NC_000014.9 scf20 99.95 True fake: scaffold gap size wrong estimation (local) 86943255 86949218 907498 901575 NC_000014.9 scf20 99.3 True fake: scaffold gap size wrong estimation (local) 86931900 86943332 919694 908262 NC_000014.9 scf20 99.98 True fake: scaffold gap size wrong estimation (local) 86913879 86931995 938478 920362 NC_000014.9 scf20 99.98 True fake: scaffold gap size wrong estimation (local) 86905591 86913783 947540 939344 NC_000014.9 scf20 99.61 True fake: scaffold gap size wrong estimation (local) 86886701 86905678 967164 948167 NC_000014.9 scf20 99.75 True fake: scaffold gap size wrong estimation (local) 86886205 86886736 968357 967822 NC_000014.9 scf20 99.25 True fake: scaffold gap size wrong estimation (local) 86883778 86885583 970856 969043 NC_000014.9 scf20 99.34 True local misassembly 86885491 86886300 972659 971850 NC_000014.9 scf20 99.75 True fake: scaffold gap size wrong estimation (local) 86879938 86883851 980072 975224 NC_000014.9 scf20 99.77 True fake: scaffold gap size wrong estimation (local) 86877678 86878436 983154 982395 NC_000014.9 scf20 99.87 True fake: scaffold gap size wrong estimation (local) 86875112 86877464 986850 984498 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 86874204 86874781 988694 988117 NC_000014.9 scf20 99.83 True indel: indel (<= 5bp) 86873414 86874202 989483 988695 NC_000014.9 scf20 99.62 True fake: scaffold gap size wrong estimation (local) 86865703 86872562 998643 991941 NC_000014.9 scf20 97.43 True fake: scaffold gap size wrong estimation (local) 86827961 86865655 1037962 999536 NC_000014.9 scf20 99.66 True fake: scaffold gap size wrong estimation (local) 86813558 86828055 1053850 1038599 NC_000014.9 scf20 99.88 True fake: scaffold gap size wrong estimation (local) 86811146 86813629 1057071 1054627 NC_000014.9 scf20 98.31 True fake: scaffold gap size wrong estimation (local) 86810605 86811236 1058708 1058077 NC_000014.9 scf20 100.0 True local misassembly 86809269 86809998 1059693 1058964 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 86808015 86808959 1061681 1060737 NC_000014.9 scf20 99.89 True fake: scaffold gap size wrong estimation (local) 86772831 86807793 1097731 1062780 NC_000014.9 scf20 99.88 True fake: scaffold gap size wrong estimation (local) 86770162 86772918 1101180 1098424 NC_000014.9 scf20 99.96 True fake: scaffold gap size wrong estimation (local) 86767655 86769862 1104472 1102265 NC_000014.9 scf20 99.91 True fake: scaffold gap size wrong estimation (local) 86765976 86767720 1107075 1105332 NC_000014.9 scf20 99.83 True fake: scaffold gap size wrong estimation (local) 86759787 86765740 1114094 1108137 NC_000014.9 scf20 99.8 True fake: scaffold gap size wrong estimation (local) 86751535 86759879 1123128 1114784 NC_000014.9 scf20 99.93 True fake: scaffold gap size wrong estimation (local) 86747906 86751625 1127461 1123909 NC_000014.9 scf20 95.4 True fake: scaffold gap size wrong estimation (local) 86745910 86746711 1130394 1129593 NC_000014.9 scf20 99.88 True fake: scaffold gap size wrong estimation (local) 86741394 86745972 1136621 1131912 NC_000014.9 scf20 97.13 True fake: scaffold gap size wrong estimation (local) 86734898 86741466 1144724 1137294 NC_000014.9 scf20 98.05 True fake: scaffold gap size wrong estimation (local) 86734023 86734565 1146943 1146401 NC_000014.9 scf20 100.0 True local misassembly 86731664 86733155 1148617 1147126 NC_000014.9 scf20 99.66 True fake: scaffold gap size wrong estimation (local) 86722026 86731687 1159625 1149963 NC_000014.9 scf20 99.88 True fake: scaffold gap size wrong estimation (local) 86720205 86722080 1162225 1160350 NC_000014.9 scf20 99.95 True fake: scaffold gap size wrong estimation (local) 86696450 86720296 1186773 1162935 NC_000014.9 scf20 99.74 True fake: scaffold gap size wrong estimation (local) 86688737 86694616 1195119 1189240 NC_000014.9 scf20 99.86 True fake: scaffold gap size wrong estimation (local) 86684853 86688801 1199663 1195717 NC_000014.9 scf20 99.82 True fake: scaffold gap size wrong estimation (local) 86679369 86684908 1205940 1200400 NC_000014.9 scf20 99.89 True fake: scaffold gap size wrong estimation (local) 86666004 86679211 1220797 1206813 NC_000014.9 scf20 99.8 True fake: scaffold gap size wrong estimation (local) 86662810 86666083 1224797 1221526 NC_000014.9 scf20 99.82 True fake: scaffold gap size wrong estimation (local) 86660170 86662897 1228270 1225543 NC_000014.9 scf20 99.85 True fake: scaffold gap size wrong estimation (local) 86655026 86660263 1234256 1229011 NC_000014.9 scf20 99.79 True fake: scaffold gap size wrong estimation (local) 86648373 86655119 1241687 1234940 NC_000014.9 scf20 99.93 True fake: scaffold gap size wrong estimation (local) 86641219 86648455 1249568 1242322 NC_000014.9 scf20 99.81 True fake: scaffold gap size wrong estimation (local) 86636470 86641124 1255114 1250458 NC_000014.9 scf20 99.87 True relocation, inconsistency = 4652278 91293568 91298602 1255280 1260351 NC_000014.9 scf20 99.17 True fake: scaffold gap size wrong estimation (local) 91298535 91312505 1261027 1274996 NC_000014.9 scf20 99.9 True fake: scaffold gap size wrong estimation (local) 91312426 91319903 1275696 1283173 NC_000014.9 scf20 99.95 True fake: scaffold gap size wrong estimation (local) 91320033 91323158 1284078 1287204 NC_000014.9 scf20 99.94 True fake: scaffold gap size wrong estimation (local) 91323060 91325712 1287869 1290521 NC_000014.9 scf20 99.92 True fake: scaffold gap size wrong estimation (local) 91326243 91344595 1291835 1310187 NC_000014.9 scf20 99.94 True fake: scaffold gap size wrong estimation (local) 91345273 91346560 1311630 1312917 NC_000014.9 scf20 100.0 True local misassembly 91346777 91347562 1312918 1313703 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 91348100 91350204 1315107 1317212 NC_000014.9 scf20 99.95 True fake: scaffold gap size wrong estimation (local) 91350328 91355746 1318167 1323585 NC_000014.9 scf20 99.96 True fake: scaffold gap size wrong estimation (local) 91355654 91362253 1324309 1331541 NC_000014.9 scf20 95.76 True fake: scaffold gap size wrong estimation (local) 91362179 91366257 1333618 1338673 NC_000014.9 scf20 99.78 True fake: scaffold gap size wrong estimation (local) 91366203 91370209 1339377 1343383 NC_000014.9 scf20 99.93 True fake: scaffold gap size wrong estimation (local) 91370113 91389837 1344099 1365405 NC_000014.9 scf20 99.9 True fake: scaffold gap size wrong estimation (local) 91389954 91392746 1366362 1369154 NC_000014.9 scf20 99.96 True fake: scaffold gap size wrong estimation (local) 91392660 91399652 1369964 1376864 NC_000014.9 scf20 98.26 True fake: scaffold gap size wrong estimation (local) 91399735 91401250 1377760 1379274 NC_000014.9 scf20 99.8 True fake: scaffold gap size wrong estimation (local) 91401363 91403834 1380301 1382772 NC_000014.9 scf20 99.96 True fake: scaffold gap size wrong estimation (local) 91403736 91404792 1383310 1384366 NC_000014.9 scf20 100.0 True fake: scaffold gap size wrong estimation (local) 91404980 91409233 1385493 1389746 NC_000014.9 scf20 99.98 True fake: scaffold gap size wrong estimation (local) 91409629 91412463 1390946 1393709 NC_000014.9 scf20 97.39 True fake: scaffold gap size wrong estimation (local) 91412652 91415533 1394704 1397585 NC_000014.9 scf20 99.97 True fake: scaffold gap size wrong estimation (local) 91415678 91417851 1398558 1400730 NC_000014.9 scf20 99.82 True fake: scaffold gap size wrong estimation (local) 91418313 91419931 1402029 1403647 NC_000014.9 scf20 99.94 True fake: scaffold gap size wrong estimation (local) 91420123 91424014 1404774 1409364 NC_000014.9 scf20 96.62 True fake: scaffold gap size wrong estimation (local) 91423934 91430951 1409966 1417729 NC_000014.9 scf20 98.38 True CONTIG scf20 1417729 misassembled 28179872 28188763 8920 5 NC_000014.9 scf21 99.65 True fake: scaffold gap size wrong estimation (local) 28173144 28178137 16957 11254 NC_000014.9 scf21 96.68 True fake: scaffold gap size wrong estimation (local) 28172372 28172959 17819 17232 NC_000014.9 scf21 100.0 True fake: scaffold gap size wrong estimation (local) 28170600 28171157 19816 19259 NC_000014.9 scf21 99.82 True fake: scaffold gap size wrong estimation (local) 28169531 28170157 21282 20656 NC_000014.9 scf21 100.0 True fake: scaffold gap size wrong estimation (local) 28162152 28169625 29320 21847 NC_000014.9 scf21 99.96 True fake: scaffold gap size wrong estimation (local) 28149718 28162001 42507 30227 NC_000014.9 scf21 99.9 True fake: scaffold gap size wrong estimation (local) 28144637 28148052 48211 44796 NC_000014.9 scf21 99.88 True fake: scaffold gap size wrong estimation (local) 28131113 28144547 64513 49070 NC_000014.9 scf21 99.03 True fake: scaffold gap size wrong estimation (local) 28127874 28131202 68499 65182 NC_000014.9 scf21 99.4 True fake: scaffold gap size wrong estimation (local) 28124723 28127945 72342 69120 NC_000014.9 scf21 99.97 True fake: scaffold gap size wrong estimation (local) 28116885 28124815 80941 73026 NC_000014.9 scf21 99.76 True fake: scaffold gap size wrong estimation (local) 28111768 28116981 87713 81719 NC_000014.9 scf21 99.79 True relocation, inconsistency = 3098264 25002365 25013503 87714 98852 NC_000014.9 scf21 99.98 True fake: scaffold gap size wrong estimation (local) 25013427 25036789 99544 124343 NC_000014.9 scf21 99.68 True fake: scaffold gap size wrong estimation (local) 25036856 25039890 125463 128497 NC_000014.9 scf21 100.0 True fake: scaffold gap size wrong estimation (local) 25039818 25044218 129199 133505 NC_000014.9 scf21 97.73 True fake: scaffold gap size wrong estimation (local) 25044184 25045667 134307 135790 NC_000014.9 scf21 100.0 True fake: scaffold gap size wrong estimation (local) 25045608 25088027 136497 179617 NC_000014.9 scf21 99.74 True fake: scaffold gap size wrong estimation (local) 25087935 25101096 180394 194870 NC_000014.9 scf21 97.44 True fake: scaffold gap size wrong estimation (local) 25101239 25106806 196821 202301 NC_000014.9 scf21 98.35 True fake: scaffold gap size wrong estimation (local) 25106743 25124972 203172 222117 NC_000014.9 scf21 98.8 True fake: scaffold gap size wrong estimation (local) 25125105 25137987 223041 236650 NC_000014.9 scf21 99.55 True fake: scaffold gap size wrong estimation (local) 25139752 25141873 239620 241788 NC_000014.9 scf21 97.19 True fake: scaffold gap size wrong estimation (local) 25142011 25143724 242755 244468 NC_000014.9 scf21 99.71 True fake: scaffold gap size wrong estimation (local) 25143930 25148709 245505 250278 NC_000014.9 scf21 99.81 True fake: scaffold gap size wrong estimation (local) 25148626 25152015 250937 254339 NC_000014.9 scf21 99.32 True fake: scaffold gap size wrong estimation (local) 25151946 25164011 255083 267147 NC_000014.9 scf21 99.83 True fake: scaffold gap size wrong estimation (local) 25164084 25164995 268717 269628 NC_000014.9 scf21 99.56 True local misassembly 25165783 25166334 269629 270180 NC_000014.9 scf21 100.0 True indel: indel (<= 5bp) 25166337 25167571 270181 271415 NC_000014.9 scf21 100.0 True indel: indel (<= 5bp) 25167572 25168754 271417 272599 NC_000014.9 scf21 99.83 True fake: scaffold gap size wrong estimation (local) 25168755 25169262 273405 273912 NC_000014.9 scf21 99.8 True CONTIG scf21 274617 misassembled 52390660 52392938 1 2279 NC_000014.9 scf22 99.96 True fake: scaffold gap size wrong estimation (local) 52392840 52418449 2933 30092 NC_000014.9 scf22 99.76 True fake: scaffold gap size wrong estimation (local) 52418364 52465441 30796 79404 NC_000014.9 scf22 99.94 True fake: scaffold gap size wrong estimation (local) 52465532 52476999 80303 93446 NC_000014.9 scf22 99.31 True fake: scaffold gap size wrong estimation (local) 52476902 52484380 94116 102344 NC_000014.9 scf22 99.3 True fake: scaffold gap size wrong estimation (local) 52484793 52486371 103559 105137 NC_000014.9 scf22 100.0 True fake: scaffold gap size wrong estimation (local) 52486288 52488601 107153 109466 NC_000014.9 scf22 99.96 True fake: scaffold gap size wrong estimation (local) 52488832 52490071 110643 111882 NC_000014.9 scf22 100.0 True local misassembly 52490301 52491350 111883 112932 NC_000014.9 scf22 100.0 True fake: scaffold gap size wrong estimation (local) 52491351 52493201 113035 114885 NC_000014.9 scf22 99.89 True fake: scaffold gap size wrong estimation (local) 52493123 52495968 115523 118368 NC_000014.9 scf22 99.75 True fake: scaffold gap size wrong estimation (local) 52496097 52497883 119309 121095 NC_000014.9 scf22 99.89 True fake: scaffold gap size wrong estimation (local) 52498360 52500518 122344 124498 NC_000014.9 scf22 99.72 True fake: scaffold gap size wrong estimation (local) 52500420 52503042 125231 127868 NC_000014.9 scf22 99.32 True CONTIG scf22 131334 correct 55491779 55492988 1 1223 NC_000014.9 scf23 98.94 True fake: scaffold gap size wrong estimation (local) 55494293 55494852 3563 4122 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55496643 55498103 7184 8644 NC_000014.9 scf23 100.0 True local misassembly 55498580 55499622 8645 9687 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55499536 55500900 10808 12172 NC_000014.9 scf23 100.0 True local misassembly 55501279 55502105 12173 12999 NC_000014.9 scf23 99.88 True fake: scaffold gap size wrong estimation (local) 55502225 55504868 14565 17208 NC_000014.9 scf23 99.85 True fake: scaffold gap size wrong estimation (local) 55504773 55506987 17969 20183 NC_000014.9 scf23 99.95 True fake: scaffold gap size wrong estimation (local) 55506932 55509369 20982 23416 NC_000014.9 scf23 99.88 True fake: scaffold gap size wrong estimation (local) 55509452 55515673 24370 31354 NC_000014.9 scf23 99.11 True fake: scaffold gap size wrong estimation (local) 55515589 55517986 32078 34475 NC_000014.9 scf23 99.96 True fake: scaffold gap size wrong estimation (local) 55518129 55520459 35469 37799 NC_000014.9 scf23 99.96 True fake: scaffold gap size wrong estimation (local) 55521804 55523210 39875 41281 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55523163 55524011 42445 43307 NC_000014.9 scf23 98.26 True fake: scaffold gap size wrong estimation (local) 55524746 55525262 44511 45027 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55525293 55526751 45364 46822 NC_000014.9 scf23 99.86 True fake: scaffold gap size wrong estimation (local) 55526752 55527514 49305 50067 NC_000014.9 scf23 99.61 True local misassembly 55527695 55528936 50145 51386 NC_000014.9 scf23 99.92 True fake: scaffold gap size wrong estimation (local) 55529148 55532027 52654 55533 NC_000014.9 scf23 99.97 True local misassembly 55532289 55532797 55534 56042 NC_000014.9 scf23 99.41 True fake: scaffold gap size wrong estimation (local) 55532965 55538281 57137 62453 NC_000014.9 scf23 99.91 True fake: scaffold gap size wrong estimation (local) 55538673 55542933 63586 67846 NC_000014.9 scf23 99.91 True fake: scaffold gap size wrong estimation (local) 55543086 55546461 68792 72053 NC_000014.9 scf23 96.48 True fake: scaffold gap size wrong estimation (local) 55546372 55547228 72842 73698 NC_000014.9 scf23 99.77 True fake: scaffold gap size wrong estimation (local) 55547433 55549096 73984 75646 NC_000014.9 scf23 99.94 True fake: scaffold gap size wrong estimation (local) 55549229 55550772 77044 78587 NC_000014.9 scf23 100.0 True local misassembly 55551315 55552110 78588 79383 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55552064 55557931 80659 86526 NC_000014.9 scf23 99.93 True fake: scaffold gap size wrong estimation (local) 55557846 55559777 87253 89281 NC_000014.9 scf23 95.12 True fake: scaffold gap size wrong estimation (local) 55559709 55578015 89982 110712 NC_000014.9 scf23 99.46 True fake: not a misassembly (possible transposable element) 74119243 74120669 110713 112139 NC_000014.9 scf23 99.87 True fake: not a misassembly (possible transposable element) 55577937 55579494 112253 113809 NC_000014.9 scf23 99.81 True fake: scaffold gap size wrong estimation (local) 55580475 55587109 115677 123139 NC_000014.9 scf23 99.34 True fake: scaffold gap size wrong estimation (local) 55587016 55596025 123920 134446 NC_000014.9 scf23 99.11 True fake: scaffold gap size wrong estimation (local) 55596158 55607413 135595 147617 NC_000014.9 scf23 99.88 True fake: scaffold gap size wrong estimation (local) 55607327 55614546 148321 155539 NC_000014.9 scf23 99.88 True fake: scaffold gap size wrong estimation (local) 55614450 55621882 156178 163610 NC_000014.9 scf23 99.91 True fake: scaffold gap size wrong estimation (local) 55622084 55627832 164546 170294 NC_000014.9 scf23 99.97 True fake: scaffold gap size wrong estimation (local) 55627751 55629274 170950 172473 NC_000014.9 scf23 99.93 True fake: scaffold gap size wrong estimation (local) 55629414 55634544 173547 178673 NC_000014.9 scf23 99.86 True fake: scaffold gap size wrong estimation (local) 55634454 55637467 179335 182348 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55637375 55646397 182987 192774 NC_000014.9 scf23 99.57 True fake: scaffold gap size wrong estimation (local) 55646479 55647546 194221 195288 NC_000014.9 scf23 99.81 True fake: scaffold gap size wrong estimation (local) 55647810 55652413 196548 201150 NC_000014.9 scf23 99.96 True fake: scaffold gap size wrong estimation (local) 55652635 55654338 202181 203884 NC_000014.9 scf23 99.94 True fake: scaffold gap size wrong estimation (local) 55654256 55656735 204815 207292 NC_000014.9 scf23 99.88 True fake: scaffold gap size wrong estimation (local) 55657717 55677294 209294 229617 NC_000014.9 scf23 99.79 True fake: scaffold gap size wrong estimation (local) 55677865 55679352 230996 232483 NC_000014.9 scf23 99.87 True fake: scaffold gap size wrong estimation (local) 55679272 55714432 233210 268366 NC_000014.9 scf23 99.94 True fake: scaffold gap size wrong estimation (local) 55714336 55718114 269100 272782 NC_000014.9 scf23 97.36 True fake: scaffold gap size wrong estimation (local) 55718421 55726741 273917 282237 NC_000014.9 scf23 99.99 True fake: scaffold gap size wrong estimation (local) 55728000 55738719 284145 294899 NC_000014.9 scf23 99.67 True fake: scaffold gap size wrong estimation (local) 55738624 55741767 295550 298690 NC_000014.9 scf23 99.71 True fake: scaffold gap size wrong estimation (local) 55741937 55751683 299774 309379 NC_000014.9 scf23 98.49 True fake: scaffold gap size wrong estimation (local) 55751591 55756977 310052 315438 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55757432 55758729 316487 317786 NC_000014.9 scf23 99.85 True fake: scaffold gap size wrong estimation (local) 55758646 55764877 318667 324925 NC_000014.9 scf23 99.54 True fake: scaffold gap size wrong estimation (local) 55764785 55768968 325549 329755 NC_000014.9 scf23 99.24 True fake: scaffold gap size wrong estimation (local) 55768891 55770809 330544 332462 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55770710 55771236 333614 334140 NC_000014.9 scf23 99.43 True local misassembly 55771938 55772482 334533 335077 NC_000014.9 scf23 99.45 True local misassembly 55772656 55773485 335078 335907 NC_000014.9 scf23 100.0 True fake: scaffold gap size wrong estimation (local) 55773391 55776198 337289 340096 NC_000014.9 scf23 99.79 True fake: scaffold gap size wrong estimation (local) 55776102 55782498 340765 347160 NC_000014.9 scf23 99.84 True fake: scaffold gap size wrong estimation (local) 55782425 55787963 347850 353388 NC_000014.9 scf23 99.98 True fake: scaffold gap size wrong estimation (local) 55787867 55792143 354094 358982 NC_000014.9 scf23 98.71 True fake: scaffold gap size wrong estimation (local) 55792045 55808955 359432 376342 NC_000014.9 scf23 99.95 True CONTIG scf23 376342 correct 44026968 44032120 1 5159 NC_000014.9 scf24 99.81 True fake: scaffold gap size wrong estimation (local) 44032038 44043502 5784 17254 NC_000014.9 scf24 99.92 True fake: scaffold gap size wrong estimation (local) 44043408 44046482 17969 21043 NC_000014.9 scf24 100.0 True fake: scaffold gap size wrong estimation (local) 44046916 44047519 21592 22195 NC_000014.9 scf24 100.0 True fake: scaffold gap size wrong estimation (local) 44047426 44058891 22950 34478 NC_000014.9 scf24 99.4 True fake: scaffold gap size wrong estimation (local) 44058795 44070239 35103 46547 NC_000014.9 scf24 99.88 True fake: scaffold gap size wrong estimation (local) 44070147 44075601 47211 52663 NC_000014.9 scf24 99.87 True fake: scaffold gap size wrong estimation (local) 44075880 44083357 53702 61204 NC_000014.9 scf24 99.65 True fake: scaffold gap size wrong estimation (local) 44084236 44119106 62638 97520 NC_000014.9 scf24 99.83 True fake: scaffold gap size wrong estimation (local) 44119019 44126953 98213 106500 NC_000014.9 scf24 98.65 True fake: scaffold gap size wrong estimation (local) 44128331 44158223 108856 139594 NC_000014.9 scf24 99.64 True fake: scaffold gap size wrong estimation (local) 44160201 44167563 142082 150270 NC_000014.9 scf24 99.14 True fake: scaffold gap size wrong estimation (local) 44167471 44171728 150960 156048 NC_000014.9 scf24 95.64 True fake: scaffold gap size wrong estimation (local) 44171638 44183391 156708 170088 NC_000014.9 scf24 99.34 True fake: scaffold gap size wrong estimation (local) 44183292 44198687 170733 186109 NC_000014.9 scf24 99.82 True fake: scaffold gap size wrong estimation (local) 44198781 44200245 186924 188388 NC_000014.9 scf24 99.86 True local misassembly 44200401 44201255 188389 189243 NC_000014.9 scf24 99.77 True fake: scaffold gap size wrong estimation (local) 44202353 44208551 191062 197251 NC_000014.9 scf24 99.76 True CONTIG scf24 197251 correct 84730313 84734873 1 4574 NC_000014.9 scf25 99.67 True fake: scaffold gap size wrong estimation (local) 84734787 84741694 5219 12960 NC_000014.9 scf25 99.55 True fake: scaffold gap size wrong estimation (local) 84741603 84746448 13736 18580 NC_000014.9 scf25 99.75 True fake: scaffold gap size wrong estimation (local) 84746352 84755236 19203 29265 NC_000014.9 scf25 98.18 True fake: scaffold gap size wrong estimation (local) 84755141 84790091 30011 67606 NC_000014.9 scf25 99.53 True fake: scaffold gap size wrong estimation (local) 84790260 84812294 68591 92946 NC_000014.9 scf25 99.65 True fake: scaffold gap size wrong estimation (local) 84812512 84849477 93167 130913 NC_000014.9 scf25 99.24 True fake: scaffold gap size wrong estimation (local) 84849386 84853130 131595 135339 NC_000014.9 scf25 99.95 True fake: scaffold gap size wrong estimation (local) 84853340 84854504 136375 137536 NC_000014.9 scf25 99.57 True fake: scaffold gap size wrong estimation (local) 84854433 84866605 138340 150511 NC_000014.9 scf25 99.92 True fake: scaffold gap size wrong estimation (local) 84866519 84875168 151117 159766 NC_000014.9 scf25 99.86 True fake: scaffold gap size wrong estimation (local) 84875080 84883511 160447 169624 NC_000014.9 scf25 99.15 True fake: scaffold gap size wrong estimation (local) 84883412 84884659 170577 171840 NC_000014.9 scf25 98.66 True fake: scaffold gap size wrong estimation (local) 84884858 84894118 173090 183175 NC_000014.9 scf25 99.85 True fake: scaffold gap size wrong estimation (local) 84894052 84898721 183897 189286 NC_000014.9 scf25 99.94 True fake: scaffold gap size wrong estimation (local) 84899196 84914020 189784 206222 NC_000014.9 scf25 99.63 True fake: scaffold gap size wrong estimation (local) 84914195 84928626 207168 222293 NC_000014.9 scf25 99.92 True fake: scaffold gap size wrong estimation (local) 84928570 84930733 223074 225235 NC_000014.9 scf25 99.91 True fake: scaffold gap size wrong estimation (local) 84930642 84938401 225854 233631 NC_000014.9 scf25 99.76 True fake: scaffold gap size wrong estimation (local) 84938353 84944990 234428 240916 NC_000014.9 scf25 97.74 True fake: scaffold gap size wrong estimation (local) 84944892 84946399 241756 243263 NC_000014.9 scf25 100.0 True fake: scaffold gap size wrong estimation (local) 84946341 84956177 244090 253926 NC_000014.9 scf25 99.99 True fake: scaffold gap size wrong estimation (local) 84956114 84962869 254646 261361 NC_000014.9 scf25 98.89 True fake: scaffold gap size wrong estimation (local) 84962770 84965369 262036 264635 NC_000014.9 scf25 99.88 True fake: scaffold gap size wrong estimation (local) 84965273 84979735 265327 279793 NC_000014.9 scf25 99.91 True fake: scaffold gap size wrong estimation (local) 84979899 84988805 280709 289614 NC_000014.9 scf25 99.93 True fake: scaffold gap size wrong estimation (local) 84989007 84990704 290618 292315 NC_000014.9 scf25 99.94 True fake: scaffold gap size wrong estimation (local) 84990606 84995804 293152 298784 NC_000014.9 scf25 97.52 True fake: scaffold gap size wrong estimation (local) 84995714 85004868 299737 308900 NC_000014.9 scf25 99.81 True fake: scaffold gap size wrong estimation (local) 85005159 85012011 309966 316818 NC_000014.9 scf25 99.84 True fake: scaffold gap size wrong estimation (local) 85011922 85013747 317502 319327 NC_000014.9 scf25 99.95 True fake: scaffold gap size wrong estimation (local) 85013648 85018827 320125 326139 NC_000014.9 scf25 98.95 True CONTIG scf25 327326 correct 94363767 94370100 47 7205 NC_000014.9 scf26 99.62 True fake: scaffold gap size wrong estimation (local) 94371134 94380310 8958 18134 NC_000014.9 scf26 99.84 True fake: scaffold gap size wrong estimation (local) 94380559 94393084 19246 32569 NC_000014.9 scf26 99.85 True fake: scaffold gap size wrong estimation (local) 94392989 94402044 33291 42347 NC_000014.9 scf26 99.93 True fake: scaffold gap size wrong estimation (local) 94402248 94405518 43350 46620 NC_000014.9 scf26 99.91 True fake: scaffold gap size wrong estimation (local) 94405445 94411667 47317 53539 NC_000014.9 scf26 99.89 True fake: scaffold gap size wrong estimation (local) 94411589 94414694 54204 57309 NC_000014.9 scf26 99.97 True fake: scaffold gap size wrong estimation (local) 94414603 94417085 57984 60466 NC_000014.9 scf26 99.68 True fake: scaffold gap size wrong estimation (local) 94417446 94421533 61567 65654 NC_000014.9 scf26 99.95 True fake: scaffold gap size wrong estimation (local) 94421434 94424026 66335 68928 NC_000014.9 scf26 99.65 True fake: scaffold gap size wrong estimation (local) 94423927 94433672 69638 80168 NC_000014.9 scf26 98.16 True fake: scaffold gap size wrong estimation (local) 94433579 94434346 81166 81933 NC_000014.9 scf26 99.87 True fake: scaffold gap size wrong estimation (local) 94434627 94454466 82210 104539 NC_000014.9 scf26 98.4 True fake: scaffold gap size wrong estimation (local) 94454372 94461906 107111 115501 NC_000014.9 scf26 98.23 True fake: scaffold gap size wrong estimation (local) 94461807 94467371 116265 121823 NC_000014.9 scf26 99.6 True fake: scaffold gap size wrong estimation (local) 94467293 94477995 122534 133993 NC_000014.9 scf26 99.27 True fake: scaffold gap size wrong estimation (local) 94477899 94482367 134672 139140 NC_000014.9 scf26 99.93 True fake: scaffold gap size wrong estimation (local) 94482960 94495153 140485 153438 NC_000014.9 scf26 99.47 True fake: scaffold gap size wrong estimation (local) 94495277 94519644 154297 178662 NC_000014.9 scf26 99.88 True fake: scaffold gap size wrong estimation (local) 94520110 94533194 179967 193051 NC_000014.9 scf26 99.97 True fake: scaffold gap size wrong estimation (local) 94533101 94534732 194482 196142 NC_000014.9 scf26 98.19 True fake: scaffold gap size wrong estimation (local) 94535993 94540880 198235 203136 NC_000014.9 scf26 99.71 True fake: scaffold gap size wrong estimation (local) 94540800 94544336 203803 207337 NC_000014.9 scf26 99.86 True fake: scaffold gap size wrong estimation (local) 94544242 94552849 207999 216606 NC_000014.9 scf26 99.9 True fake: scaffold gap size wrong estimation (local) 94552788 94557384 217349 221783 NC_000014.9 scf26 96.35 True fake: scaffold gap size wrong estimation (local) 94557287 94600235 222430 266140 NC_000014.9 scf26 99.7 True fake: scaffold gap size wrong estimation (local) 94600145 94601142 266874 267867 NC_000014.9 scf26 99.1 True fake: scaffold gap size wrong estimation (local) 94601494 94606413 268193 273983 NC_000014.9 scf26 99.61 True fake: scaffold gap size wrong estimation (local) 94606318 94607766 274864 276312 NC_000014.9 scf26 100.0 True fake: scaffold gap size wrong estimation (local) 94608708 94620402 277275 291171 NC_000014.9 scf26 96.22 True fake: scaffold gap size wrong estimation (local) 94620313 94626453 291852 297992 NC_000014.9 scf26 99.92 True fake: scaffold gap size wrong estimation (local) 94626773 94637650 299072 309949 NC_000014.9 scf26 99.95 True fake: scaffold gap size wrong estimation (local) 94638127 94640167 311191 313231 NC_000014.9 scf26 99.85 True fake: scaffold gap size wrong estimation (local) 94640446 94650757 314297 324611 NC_000014.9 scf26 99.9 True fake: scaffold gap size wrong estimation (local) 94650982 94655171 326287 330491 NC_000014.9 scf26 99.0 True fake: scaffold gap size wrong estimation (local) 94655512 94657436 331540 333483 NC_000014.9 scf26 99.36 True CONTIG scf26 333483 correct 49094314 49096821 2508 1 NC_000014.9 scf27 99.92 True fake: scaffold gap size wrong estimation (local) 49086297 49093734 11249 3812 NC_000014.9 scf27 99.91 True fake: scaffold gap size wrong estimation (local) 49080728 49086376 17594 11948 NC_000014.9 scf27 99.95 True fake: scaffold gap size wrong estimation (local) 49074919 49080820 24192 18292 NC_000014.9 scf27 99.95 True fake: scaffold gap size wrong estimation (local) 49067811 49075016 32066 24861 NC_000014.9 scf27 99.93 True fake: scaffold gap size wrong estimation (local) 49066894 49067540 33688 33042 NC_000014.9 scf27 99.85 True fake: scaffold gap size wrong estimation (local) 49065010 49065865 35392 34538 NC_000014.9 scf27 99.77 True fake: scaffold gap size wrong estimation (local) 49030285 49064667 71753 37341 NC_000014.9 scf27 99.85 True fake: not a misassembly (possible transposable element) 60325241 60327189 73700 71754 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 49027147 49029196 75750 73701 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60318644 60323963 81070 75751 NC_000014.9 scf27 99.98 True fake: not a misassembly (possible transposable element) 49017842 49020564 84143 81421 NC_000014.9 scf27 99.85 True relocation, inconsistency = -11298490 60284574 60316331 116610 84144 NC_000014.9 scf27 97.9 True fake: not a misassembly (possible transposable element) 48988188 48989158 117581 116611 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60270763 60284364 131015 117582 NC_000014.9 scf27 98.76 True fake: scaffold gap size wrong estimation (local) 60255374 60270703 147221 131892 NC_000014.9 scf27 99.99 True fake: scaffold gap size wrong estimation (local) 60249747 60255273 153651 148125 NC_000014.9 scf27 99.98 True fake: scaffold gap size wrong estimation (local) 60244778 60249560 160242 154660 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 60239849 60244834 167120 161232 NC_000014.9 scf27 98.23 True fake: scaffold gap size wrong estimation (local) 60231765 60239905 176724 167831 NC_000014.9 scf27 99.56 True fake: scaffold gap size wrong estimation (local) 60210936 60231854 199887 177391 NC_000014.9 scf27 99.77 True fake: scaffold gap size wrong estimation (local) 60207296 60211026 204291 200561 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 60202797 60207391 209541 204947 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 60200519 60202839 212602 210283 NC_000014.9 scf27 99.96 True fake: scaffold gap size wrong estimation (local) 60186789 60200616 227150 213324 NC_000014.9 scf27 99.94 True relocation, inconsistency = -29859768 90035044 90046517 238659 227190 NC_000014.9 scf27 99.96 True relocation, inconsistency = 29858120 60169133 60176870 246450 238713 NC_000014.9 scf27 99.99 True fake: not a misassembly (possible transposable element) 90027130 90029210 249080 247000 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60163157 60167238 253178 249081 NC_000014.9 scf27 99.61 True fake: not a misassembly (possible transposable element) 90020795 90023820 256204 253179 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60160156 60160888 256937 256205 NC_000014.9 scf27 100.0 True relocation, scaffold gap is present, inconsistency = -29860683 90013208 90020504 264568 257272 NC_000014.9 scf27 99.99 True fake: not a misassembly (possible transposable element) 60150526 60154486 268529 264569 NC_000014.9 scf27 99.97 True fake: not a misassembly (possible transposable element) 90006729 90010843 272644 268530 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60145556 60147120 274214 272650 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 90003139 90005930 277006 274215 NC_000014.9 scf27 100.0 True relocation, inconsistency = 29859647 60137815 60143452 282683 277046 NC_000014.9 scf27 99.98 True local misassembly 60135743 60137814 285528 283457 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 89993544 89997118 289103 285529 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 60130821 60132964 291247 289104 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 60130025 60130820 292855 292060 NC_000014.9 scf27 97.74 True indel: indel (> 5bp) 60129177 60129978 293657 292856 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89985834 89990656 298479 293658 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 60113528 60125852 310803 298480 NC_000014.9 scf27 99.94 True relocation, inconsistency = -29863929 89976550 89977456 311710 310804 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 80826106 80828139 311711 313744 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 89970836 89975177 318356 314013 NC_000014.9 scf27 99.95 True relocation, inconsistency = 9131734 80831931 80839100 318357 325526 NC_000014.9 scf27 99.93 True relocation, inconsistency = 9112752 89951853 89964399 338073 325527 NC_000014.9 scf27 99.98 True fake: not a misassembly (possible transposable element) 80850935 80856458 338074 343597 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 89945920 89947975 345653 343598 NC_000014.9 scf27 100.0 True local misassembly 89945018 89945679 346705 346044 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 89939874 89944917 352463 347420 NC_000014.9 scf27 99.94 True relocation, inconsistency = 9065150 80863756 80874723 352464 363431 NC_000014.9 scf27 99.91 True fake: scaffold gap size wrong estimation (local) 80875224 80878948 364717 368441 NC_000014.9 scf27 99.87 True fake: not a misassembly (possible transposable element) 89924569 89928124 371997 368442 NC_000014.9 scf27 99.72 True fake: not a misassembly (possible transposable element) 80880866 80885483 372009 376626 NC_000014.9 scf27 99.85 True relocation, scaffold gap is present, inconsistency = 9032450 89918496 89920889 379582 377189 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 89917060 89918445 381824 380439 NC_000014.9 scf27 99.93 True indel: indel (> 5bp) 89916158 89917053 382720 381825 NC_000014.9 scf27 100.0 True indel: indel (<= 5bp) 89910607 89916156 388270 382721 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 80893619 80897708 389054 393143 NC_000014.9 scf27 99.85 True fake: not a misassembly (possible transposable element) 89906175 89907474 394436 393144 NC_000014.9 scf27 99.39 True fake: not a misassembly (possible transposable element) 80898262 80901018 394437 397193 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89898667 89904561 403537 397643 NC_000014.9 scf27 100.0 True relocation, inconsistency = 8991000 80906585 80907657 403547 404619 NC_000014.9 scf27 99.72 True indel: indel (<= 5bp) 80907659 80909111 404620 406072 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 80909404 80911207 407112 408915 NC_000014.9 scf27 99.83 True relocation, inconsistency = 8982966 89894174 89894942 409684 408916 NC_000014.9 scf27 99.87 True local misassembly 89892804 89893820 410701 409685 NC_000014.9 scf27 99.71 True fake: scaffold gap size wrong estimation (local) 89886523 89892803 418565 412285 NC_000014.9 scf27 99.44 True relocation, inconsistency = 8954227 80919344 80932292 418569 431517 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 89870757 89876192 436960 431527 NC_000014.9 scf27 99.87 True fake: not a misassembly (possible transposable element) 80936201 80938263 436961 439023 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 89864689 89869411 443752 439029 NC_000014.9 scf27 99.89 True fake: not a misassembly (possible transposable element) 80941365 80943826 443753 446214 NC_000014.9 scf27 99.76 True fake: not a misassembly (possible transposable element) 89860282 89863026 448959 446215 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 80945927 80948047 448960 451057 NC_000014.9 scf27 98.73 True fake: scaffold gap size wrong estimation (local) 80948426 80949687 452243 453504 NC_000014.9 scf27 99.52 True fake: not a misassembly (possible transposable element) 89855591 89857424 455338 453505 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 80950822 80953562 455339 458078 NC_000014.9 scf27 99.93 True relocation, scaffold gap is present, inconsistency = 8881089 89835590 89854012 478129 459017 NC_000014.9 scf27 99.43 True fake: not a misassembly (possible transposable element) 80969800 80970981 478161 479342 NC_000014.9 scf27 99.92 True fake: not a misassembly (possible transposable element) 89834382 89835219 480180 479343 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 80971003 80973220 480181 482398 NC_000014.9 scf27 99.86 True fake: not a misassembly (possible transposable element) 89827808 89832207 487429 483030 NC_000014.9 scf27 99.77 True fake: not a misassembly (possible transposable element) 80976663 80982245 487430 493029 NC_000014.9 scf27 99.27 True fake: not a misassembly (possible transposable element) 89818405 89822992 497617 493030 NC_000014.9 scf27 99.89 True fake: not a misassembly (possible transposable element) 80985273 80991541 497638 503906 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 89810757 89814345 507494 503907 NC_000014.9 scf27 99.89 True relocation, inconsistency = 8808746 80993723 81002009 507496 515780 NC_000014.9 scf27 99.83 True fake: scaffold gap size wrong estimation (local) 81003681 81006700 517902 520907 NC_000014.9 scf27 99.3 True fake: not a misassembly (possible transposable element) 89799033 89800022 522131 521142 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 81007090 81012054 522132 527884 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 89791339 89794861 531407 527885 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 81014969 81017882 531416 534328 NC_000014.9 scf27 99.86 True fake: scaffold gap size wrong estimation (local) 81017840 81019232 535152 536544 NC_000014.9 scf27 99.86 True fake: not a misassembly (possible transposable element) 89786959 89788040 537626 536545 NC_000014.9 scf27 99.63 True fake: not a misassembly (possible transposable element) 81019988 81022274 538075 540361 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 89779631 89785070 545817 540362 NC_000014.9 scf27 99.29 True fake: not a misassembly (possible transposable element) 81025091 81026904 545818 547631 NC_000014.9 scf27 99.72 True fake: scaffold gap size wrong estimation (local) 81026905 81031120 548492 552707 NC_000014.9 scf27 98.29 True fake: not a misassembly (possible transposable element) 89774464 89775100 553351 552715 NC_000014.9 scf27 99.69 True fake: not a misassembly (possible transposable element) 81031023 81034083 553432 556492 NC_000014.9 scf27 99.74 True local misassembly 81034293 81034829 556493 557029 NC_000014.9 scf27 99.63 True fake: not a misassembly (possible transposable element) 89769645 89772557 559939 557030 NC_000014.9 scf27 99.73 True fake: not a misassembly (possible transposable element) 81036818 81037329 559945 560456 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 81037445 81038700 560829 562084 NC_000014.9 scf27 99.52 True relocation, inconsistency = 8710051 89748752 89768182 581514 562085 NC_000014.9 scf27 99.89 True fake: not a misassembly (possible transposable element) 81055775 81057375 581515 583115 NC_000014.9 scf27 99.94 True fake: not a misassembly (possible transposable element) 89741020 89747927 590023 583116 NC_000014.9 scf27 99.81 True fake: not a misassembly (possible transposable element) 81063485 81067966 590024 594511 NC_000014.9 scf27 99.84 True fake: not a misassembly (possible transposable element) 89737330 89738349 595531 594512 NC_000014.9 scf27 99.9 True local misassembly 89735055 89736963 597440 595532 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 81070126 81070628 597441 597943 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89734609 89735155 598818 598272 NC_000014.9 scf27 99.09 True local misassembly 89733603 89734381 599603 598825 NC_000014.9 scf27 100.0 True indel: indel (<= 5bp) 89731199 89733601 602006 599604 NC_000014.9 scf27 99.83 True fake: not a misassembly (possible transposable element) 81073037 81075586 602020 604569 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 89722511 89729372 611437 604570 NC_000014.9 scf27 99.78 True relocation, inconsistency = 8633470 81080897 81089040 611438 619578 NC_000014.9 scf27 99.94 True fake: not a misassembly (possible transposable element) 89710293 89715901 625187 619579 NC_000014.9 scf27 99.89 True fake: not a misassembly (possible transposable element) 81093910 81094703 625188 625981 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89705700 89710038 630535 626192 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 81097690 81106904 630536 640513 NC_000014.9 scf27 96.31 True fake: not a misassembly (possible transposable element) 89696358 89697166 641322 640514 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 81106960 81108590 641326 642960 NC_000014.9 scf27 99.33 True relocation, inconsistency = 8575268 89683859 89695451 654549 642961 NC_000014.9 scf27 99.78 True fake: not a misassembly (possible transposable element) 20032788 20037182 658949 654550 NC_000014.9 scf27 99.75 True fake: not a misassembly (possible transposable element) 89679568 89680229 659611 658950 NC_000014.9 scf27 99.7 True fake: not a misassembly (possible transposable element) 20030880 20032888 661639 659631 NC_000014.9 scf27 99.8 True fake: not a misassembly (possible transposable element) 89677787 89678375 662249 661661 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 20029491 20030076 662835 662250 NC_000014.9 scf27 99.15 True fake: not a misassembly (possible transposable element) 89676056 89676987 663769 662836 NC_000014.9 scf27 99.57 True fake: not a misassembly (possible transposable element) 20027252 20029372 665890 663770 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 89672369 89676136 669935 666168 NC_000014.9 scf27 99.95 True fake: scaffold gap size wrong estimation (local) 89666761 89672465 676261 670557 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 20015513 20019759 680512 676262 NC_000014.9 scf27 99.67 True fake: not a misassembly (possible transposable element) 89658179 89664383 686715 680513 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 20008293 20011009 690301 687585 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 89654723 89655334 690913 690302 NC_000014.9 scf27 100.0 True relocation, scaffold gap is present, inconsistency = 69646250 19997831 20008085 701554 691301 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 89645548 89646354 702467 701661 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 19988969 19997648 711186 702508 NC_000014.9 scf27 99.83 True relocation, inconsistency = -69648753 89635547 89637721 713361 711187 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12878439 76755434 76757100 713368 715034 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 19982660 19986595 718963 715035 NC_000014.9 scf27 99.7 True fake: not a misassembly (possible transposable element) 76760158 76766699 718964 725499 NC_000014.9 scf27 99.86 True fake: not a misassembly (possible transposable element) 89623592 89625632 727542 725500 NC_000014.9 scf27 99.85 True fake: not a misassembly (possible transposable element) 76767916 76768843 727543 728470 NC_000014.9 scf27 99.78 True relocation, inconsistency = 56792444 19969667 19975471 734276 728471 NC_000014.9 scf27 99.81 True relocation, inconsistency = -69647981 89615053 89617647 736874 734277 NC_000014.9 scf27 99.85 True relocation, inconsistency = 12825228 76775613 76789824 736875 751086 NC_000014.9 scf27 99.97 True relocation, inconsistency = 12812857 89602682 89603470 751875 751087 NC_000014.9 scf27 99.87 True relocation, inconsistency = 69646214 19955396 19956467 752897 751876 NC_000014.9 scf27 95.06 True relocation, inconsistency = 56834406 76790874 76793401 752898 755425 NC_000014.9 scf27 100.0 True relocation, inconsistency = -15843644 60949758 60955529 755426 761198 NC_000014.9 scf27 99.9 True relocation, inconsistency = 41001125 19947370 19948622 762461 761209 NC_000014.9 scf27 99.76 True relocation, inconsistency = -69646595 89583927 89593964 772499 762462 NC_000014.9 scf27 99.93 True relocation, inconsistency = 69645095 19937326 19938831 774005 772500 NC_000014.9 scf27 99.87 True relocation, inconsistency = 56869171 76808003 76819308 774006 785311 NC_000014.9 scf27 99.93 True relocation, inconsistency = -15843606 60975703 60992867 785312 802477 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 89557798 89561346 806027 802479 NC_000014.9 scf27 99.83 True fake: not a misassembly (possible transposable element) 60995007 61004573 806131 815697 NC_000014.9 scf27 99.93 True relocation, inconsistency = 15838289 76843318 76845119 816153 817954 NC_000014.9 scf27 99.89 True fake: scaffold gap size wrong estimation (local) 76845120 76845864 819519 820263 NC_000014.9 scf27 99.46 True local misassembly 76846835 76847688 820544 821397 NC_000014.9 scf27 99.77 True fake: not a misassembly (possible transposable element) 89544294 89545141 822577 821730 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76848184 76850003 823279 825090 NC_000014.9 scf27 99.4 True relocation, inconsistency = 12689032 89539047 89542590 828645 825102 NC_000014.9 scf27 99.86 True fake: scaffold gap size wrong estimation (local) 89537449 89538705 831061 829805 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76854243 76856897 831064 833722 NC_000014.9 scf27 99.47 True fake: not a misassembly (possible transposable element) 89534101 89535538 835160 833723 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76857514 76859562 835166 837214 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 89531800 89532837 838295 837258 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76859850 76863215 838296 841653 NC_000014.9 scf27 99.67 True fake: not a misassembly (possible transposable element) 89528562 89529973 843066 841655 NC_000014.9 scf27 99.79 True relocation, inconsistency = 12664142 76863797 76864419 843067 843689 NC_000014.9 scf27 100.0 True local misassembly 76865050 76866165 844263 845378 NC_000014.9 scf27 99.46 True relocation, inconsistency = 12659477 89525643 89527210 846946 845379 NC_000014.9 scf27 99.94 True local misassembly 89524405 89525071 847998 847332 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76867673 76869565 848047 849902 NC_000014.9 scf27 97.94 True fake: not a misassembly (possible transposable element) 89520019 89523283 853198 849926 NC_000014.9 scf27 99.51 True fake: scaffold gap size wrong estimation (local) 89516541 89520096 857452 853913 NC_000014.9 scf27 99.33 True fake: not a misassembly (possible transposable element) 76875533 76876603 857453 858523 NC_000014.9 scf27 99.72 True fake: not a misassembly (possible transposable element) 89514928 89516348 859917 858524 NC_000014.9 scf27 97.68 True local misassembly 89513677 89514451 861059 860285 NC_000014.9 scf27 99.61 True fake: scaffold gap size wrong estimation (local) 89513103 89513695 862508 861917 NC_000014.9 scf27 99.83 True relocation, inconsistency = 12626009 76878886 76887093 862509 870712 NC_000014.9 scf27 99.84 True fake: scaffold gap size wrong estimation (local) 76887064 76889899 871469 874300 NC_000014.9 scf27 99.65 True fake: not a misassembly (possible transposable element) 89500053 89504768 879016 874301 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76893773 76896721 879017 881969 NC_000014.9 scf27 99.83 True fake: scaffold gap size wrong estimation (local) 76898961 76900076 884757 885872 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12585073 89485150 89495861 896584 885873 NC_000014.9 scf27 99.96 True fake: scaffold gap size wrong estimation (local) 89483611 89485067 898935 897479 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 89481089 89482690 902238 900637 NC_000014.9 scf27 99.94 True indel: indel (<= 5bp) 89480273 89481088 903055 902240 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 89478932 89480272 905352 904012 NC_000014.9 scf27 99.55 True relocation, inconsistency = 12564345 76913366 76914578 905361 906573 NC_000014.9 scf27 100.0 True relocation, inconsistency = 13814035 90728785 90731070 906745 909031 NC_000014.9 scf27 99.87 True relocation, inconsistency = 1252069 89474907 89476708 910840 909039 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12548596 76917558 76926310 910841 919607 NC_000014.9 scf27 99.6 True relocation, inconsistency = 13813042 90739353 90740519 919608 920774 NC_000014.9 scf27 99.91 True relocation, inconsistency = 1272090 89465379 89467261 922658 920776 NC_000014.9 scf27 99.89 True relocation, inconsistency = 12535632 76928618 76929746 922659 923787 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 90742704 90744593 923788 925676 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 76930915 76931776 925806 926667 NC_000014.9 scf27 100.0 True relocation, inconsistency = 13812992 90744769 90745315 926668 927214 NC_000014.9 scf27 100.0 True relocation, scaffold gap is present, inconsistency = 1281666 89461281 89462701 929036 927616 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12527220 76932760 76934059 929037 930336 NC_000014.9 scf27 99.85 True relocation, inconsistency = 13813971 90748031 90749551 930337 931854 NC_000014.9 scf27 99.74 True relocation, inconsistency = 1288718 89458050 89459312 933117 931855 NC_000014.9 scf27 99.69 True relocation, inconsistency = 12518576 76935984 76939473 933118 936608 NC_000014.9 scf27 99.74 True relocation, inconsistency = 13814067 90753585 90756716 936653 939781 NC_000014.9 scf27 99.49 True relocation, inconsistency = 1302589 89450011 89450995 940766 939782 NC_000014.9 scf27 99.7 True relocation, inconsistency = 12504790 76941938 76945219 940767 944048 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 90759359 90766190 944049 950879 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 76950709 76952905 950975 953171 NC_000014.9 scf27 99.95 True relocation, inconsistency = 13814824 90767743 90770547 953185 955989 NC_000014.9 scf27 99.96 True relocation, scaffold gap is present, inconsistency = 1327265 89436934 89439886 959533 956581 NC_000014.9 scf27 99.83 True relocation, inconsistency = 12475491 76957655 76961442 959534 963320 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 90776387 90778433 963321 965367 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 76962699 76963880 965368 966549 NC_000014.9 scf27 99.92 True fake: not a misassembly (possible transposable element) 90778821 90784415 966550 972140 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 76967967 76969576 972141 973740 NC_000014.9 scf27 99.32 True relocation, inconsistency = 12455885 89425462 89425998 974277 973741 NC_000014.9 scf27 100.0 True relocation, inconsistency = 1359758 90785757 90786696 974278 975217 NC_000014.9 scf27 99.89 True relocation, scaffold gap is present, inconsistency = -13816424 76970370 76973273 975315 978217 NC_000014.9 scf27 99.93 True fake: not a misassembly (possible transposable element) 89421621 89422267 978906 978260 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 76973695 76974298 979592 980195 NC_000014.9 scf27 99.83 True relocation, inconsistency = 13815767 90790066 90791000 980196 981130 NC_000014.9 scf27 99.68 True relocation, inconsistency = 1369989 89418413 89419946 982794 981261 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12440982 76976441 76977418 982807 983784 NC_000014.9 scf27 100.0 True relocation, inconsistency = 13815336 90792755 90793320 983785 984350 NC_000014.9 scf27 99.82 True relocation, inconsistency = 1374879 89417166 89417791 985060 984435 NC_000014.9 scf27 99.84 True local misassembly 89415848 89416816 986029 985061 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12436685 76978440 76979157 986035 986752 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 90795088 90797002 986754 988668 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 76980218 76983232 988669 991683 NC_000014.9 scf27 99.93 True relocation, inconsistency = 13816097 90799330 90799879 991684 992233 NC_000014.9 scf27 100.0 True local misassembly 90797984 90798651 992234 992901 NC_000014.9 scf27 99.55 True relocation, inconsistency = 1385898 89408383 89412085 996605 992902 NC_000014.9 scf27 99.81 True fake: scaffold gap size wrong estimation (local) 89404505 89408481 1001249 997270 NC_000014.9 scf27 99.67 True relocation, inconsistency = 12413475 76990211 76991015 1001264 1002070 NC_000014.9 scf27 99.75 True relocation, inconsistency = 13815225 90806241 90813685 1002071 1009515 NC_000014.9 scf27 99.87 True fake: not a misassembly (possible transposable element) 89396834 89397786 1010467 1009516 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 90813893 90816312 1010478 1012897 NC_000014.9 scf27 99.92 True relocation, inconsistency = -13816245 77000068 77001951 1012898 1014781 NC_000014.9 scf27 99.84 True relocation, inconsistency = 12389972 89391924 89393289 1016141 1014782 NC_000014.9 scf27 98.76 True fake: not a misassembly (possible transposable element) 90818589 90819381 1016142 1016934 NC_000014.9 scf27 99.75 True fake: not a misassembly (possible transposable element) 89386992 89391592 1021858 1017266 NC_000014.9 scf27 99.7 True relocation, inconsistency = 1431015 90822608 90824714 1021859 1023965 NC_000014.9 scf27 100.0 True relocation, inconsistency = -13816093 77008622 77013729 1023966 1029073 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 89381147 89382362 1030291 1029074 NC_000014.9 scf27 99.59 True fake: not a misassembly (possible transposable element) 77014167 77018661 1030319 1034813 NC_000014.9 scf27 99.84 True relocation, scaffold gap is present, inconsistency = 13813509 90832659 90833943 1035302 1036586 NC_000014.9 scf27 100.0 True relocation, inconsistency = 1456227 89374849 89376431 1038169 1036587 NC_000014.9 scf27 99.94 True fake: not a misassembly (possible transposable element) 77021510 77024916 1039323 1042730 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 89368518 89371896 1046250 1042872 NC_000014.9 scf27 99.76 True local misassembly 89366181 89367454 1048611 1047338 NC_000014.9 scf27 99.92 True relocation, inconsistency = 12336454 77029205 77029725 1048612 1049131 NC_000014.9 scf27 99.81 True relocation, inconsistency = 13813536 90843262 90843885 1049132 1049755 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89363991 89365567 1051712 1050142 NC_000014.9 scf27 99.56 True fake: not a misassembly (possible transposable element) 90845417 90850463 1052153 1057199 NC_000014.9 scf27 99.96 True indel: indel (<= 5bp) 90850467 90851180 1057200 1057913 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 90851181 90852107 1058661 1059587 NC_000014.9 scf27 95.79 True relocation, inconsistency = 1494218 89354788 89356962 1061762 1059588 NC_000014.9 scf27 99.77 True fake: not a misassembly (possible transposable element) 77038975 77042914 1061794 1065735 NC_000014.9 scf27 99.75 True fake: not a misassembly (possible transposable element) 89347861 89351580 1069455 1065736 NC_000014.9 scf27 99.92 True fake: not a misassembly (possible transposable element) 77046151 77047376 1069732 1070957 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 89343825 89347155 1074288 1070958 NC_000014.9 scf27 100.0 True relocation, scaffold gap is present, inconsistency = 12292594 77049566 77050351 1075168 1075943 NC_000014.9 scf27 98.73 True relocation, inconsistency = 13814664 90865038 90875594 1075966 1086521 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 77058433 77060209 1086522 1088298 NC_000014.9 scf27 99.94 True fake: not a misassembly (possible transposable element) 90876609 90878110 1088299 1089800 NC_000014.9 scf27 100.0 True relocation, inconsistency = 1545390 89329856 89331218 1091163 1089801 NC_000014.9 scf27 100.0 True local misassembly 89323600 89328267 1098220 1093544 NC_000014.9 scf27 99.51 True relocation, inconsistency = 1556356 90884633 90885142 1098230 1098739 NC_000014.9 scf27 100.0 True relocation, inconsistency = -13816945 77068198 77069524 1098740 1100066 NC_000014.9 scf27 100.0 True relocation, inconsistency = 12248767 89318304 89322491 1104266 1100079 NC_000014.9 scf27 99.93 True fake: not a misassembly (possible transposable element) 90888724 90889243 1104267 1104786 NC_000014.9 scf27 99.81 True fake: not a misassembly (possible transposable element) 89316704 89318027 1106706 1105383 NC_000014.9 scf27 99.77 True relocation, inconsistency = 12236531 77073568 77080172 1106707 1113312 NC_000014.9 scf27 99.86 True relocation, inconsistency = 13815752 90895925 90896829 1113313 1114217 NC_000014.9 scf27 100.0 True relocation, inconsistency = 1585209 89310006 89310715 1114927 1114218 NC_000014.9 scf27 99.58 True relocation, inconsistency = 12228249 77080841 77081756 1114928 1115844 NC_000014.9 scf27 99.78 True fake: not a misassembly (possible transposable element) 90897509 90904065 1115845 1122400 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 77086617 77090410 1122401 1126194 NC_000014.9 scf27 99.97 True fake: not a misassembly (possible transposable element) 90907138 90910809 1126195 1129866 NC_000014.9 scf27 99.89 True fake: not a misassembly (possible transposable element) 77093307 77094316 1129867 1130876 NC_000014.9 scf27 99.8 True relocation, inconsistency = 12203169 89297487 89298388 1131779 1130878 NC_000014.9 scf27 99.89 True relocation, inconsistency = 1613577 90911966 90913027 1131780 1132845 NC_000014.9 scf27 99.44 True relocation, inconsistency = -13817550 77095478 77096849 1132846 1134221 NC_000014.9 scf27 99.49 True relocation, inconsistency = 12197888 89294738 89295822 1135306 1134222 NC_000014.9 scf27 100.0 True relocation, inconsistency = 1618882 90914705 90915596 1135307 1136198 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 77097998 77100256 1136199 1138457 NC_000014.9 scf27 99.96 True fake: not a misassembly (possible transposable element) 90916961 90921067 1138458 1142567 NC_000014.9 scf27 99.85 True relocation, inconsistency = -13817472 77103596 77110441 1142568 1149419 NC_000014.9 scf27 99.84 True relocation, inconsistency = 12150881 89261819 89283737 1171834 1149916 NC_000014.9 scf27 99.9 True fake: not a misassembly (possible transposable element) 77129718 77132842 1171835 1174969 NC_000014.9 scf27 99.52 True fake: not a misassembly (possible transposable element) 89252549 89259409 1181829 1174970 NC_000014.9 scf27 99.83 True relocation, inconsistency = 1694979 90954389 90973993 1181830 1201434 NC_000014.9 scf27 99.83 True relocation, inconsistency = -13818887 77155107 77157554 1201435 1203883 NC_000014.9 scf27 99.76 True relocation, inconsistency = 12067541 89225108 89232843 1211630 1203896 NC_000014.9 scf27 99.84 True local misassembly 89221850 89225033 1215653 1212469 NC_000014.9 scf27 99.97 True fake: not a misassembly (possible transposable element) 77167151 77168383 1216175 1217406 NC_000014.9 scf27 99.92 True fake: not a misassembly (possible transposable element) 89204074 89220882 1234222 1217407 NC_000014.9 scf27 99.91 True relocation, inconsistency = 1779024 90999907 91000756 1234223 1235072 NC_000014.9 scf27 100.0 True relocation, inconsistency = -13818068 77182743 77186159 1235127 1238543 NC_000014.9 scf27 99.68 True fake: not a misassembly (possible transposable element) 89197427 89200577 1241694 1238544 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 77188508 77190127 1241695 1243314 NC_000014.9 scf27 99.69 True relocation, inconsistency = 12002676 89192804 89196576 1247087 1243315 NC_000014.9 scf27 99.97 True relocation, inconsistency = 1813913 91010490 91011323 1247088 1247921 NC_000014.9 scf27 99.76 True relocation, inconsistency = -13818254 77193070 77203473 1247922 1258309 NC_000014.9 scf27 99.52 True fake: not a misassembly (possible transposable element) 89178329 89182295 1262296 1258310 NC_000014.9 scf27 99.4 True fake: not a misassembly (possible transposable element) 77206646 77215617 1262297 1271272 NC_000014.9 scf27 99.8 True relocation, inconsistency = 11954601 89170471 89171014 1272068 1271525 NC_000014.9 scf27 100.0 True relocation, inconsistency = -16046876 105216049 105217346 1273366 1272069 NC_000014.9 scf27 100.0 True relocation, inconsistency = 14182540 91031255 91033508 1273367 1275620 NC_000014.9 scf27 99.78 True relocation, inconsistency = 1863605 89161553 89167649 1281717 1275621 NC_000014.9 scf27 99.97 True relocation, inconsistency = -16046914 105206920 105208466 1283264 1281718 NC_000014.9 scf27 99.94 True relocation, inconsistency = 27980838 77225400 77225989 1283357 1283946 NC_000014.9 scf27 99.66 True relocation, inconsistency = 11925142 89151132 89160108 1292924 1283947 NC_000014.9 scf27 99.99 True fake: not a misassembly (possible transposable element) 105192639 105197974 1298260 1292925 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 89141223 89146452 1303490 1298261 NC_000014.9 scf27 100.0 True relocation, inconsistency = -16046972 105187041 105188029 1304644 1303656 NC_000014.9 scf27 100.0 True relocation, inconsistency = 14130141 91055771 91056888 1304656 1305773 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 89133054 89139705 1312425 1305774 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 91061867 91062461 1312426 1313020 NC_000014.9 scf27 100.0 True relocation, inconsistency = -13814267 77248212 77250185 1313038 1315011 NC_000014.9 scf27 100.0 True relocation, inconsistency = 27918734 105168920 105179040 1325101 1315012 NC_000014.9 scf27 99.45 True relocation, inconsistency = 16046851 89112135 89122068 1335019 1325102 NC_000014.9 scf27 99.77 True fake: not a misassembly (possible transposable element) 77266037 77267526 1335020 1336508 NC_000014.9 scf27 99.93 True fake: not a misassembly (possible transposable element) 89109858 89110984 1338102 1336976 NC_000014.9 scf27 100.0 True relocation, inconsistency = 11840137 77268335 77269720 1338103 1339488 NC_000014.9 scf27 100.0 True relocation, inconsistency = 27880319 105150084 105158226 1347685 1339533 NC_000014.9 scf27 99.78 True relocation, inconsistency = 27869172 77276291 77280911 1347686 1352313 NC_000014.9 scf27 99.78 True relocation, inconsistency = 13811208 91092148 91092929 1352342 1353123 NC_000014.9 scf27 100.0 True relocation, inconsistency = 14042894 105135824 105145475 1362775 1353124 NC_000014.9 scf27 99.78 True relocation, inconsistency = 16049741 89080866 89086082 1367989 1362776 NC_000014.9 scf27 99.92 True fake: not a misassembly (possible transposable element) 77294288 77295556 1367990 1369258 NC_000014.9 scf27 99.84 True fake: not a misassembly (possible transposable element) 89079241 89080303 1370441 1369379 NC_000014.9 scf27 99.91 True fake: not a misassembly (possible transposable element) 105127479 105130187 1373456 1370746 NC_000014.9 scf27 99.78 True fake: not a misassembly (possible transposable element) 89072823 89076995 1377629 1373457 NC_000014.9 scf27 100.0 True relocation, inconsistency = 11764950 77301435 77307872 1377630 1384067 NC_000014.9 scf27 99.95 True relocation, inconsistency = 27808504 105116377 105119433 1387126 1384068 NC_000014.9 scf27 99.67 True relocation, inconsistency = 16051102 89058802 89065261 1393591 1387140 NC_000014.9 scf27 99.86 True relocation, inconsistency = 11742946 77315016 77315855 1393592 1394431 NC_000014.9 scf27 99.88 True relocation, inconsistency = 27789720 105105576 105108524 1397379 1394432 NC_000014.9 scf27 99.8 True relocation, inconsistency = 16049737 89050216 89055838 1403003 1397380 NC_000014.9 scf27 99.98 True relocation, inconsistency = 2075154 91130993 91131573 1403004 1403583 NC_000014.9 scf27 99.83 True relocation, inconsistency = 13968804 105100383 105100884 1404089 1403588 NC_000014.9 scf27 100.0 True relocation, inconsistency = 27776911 77322879 77323471 1404090 1404682 NC_000014.9 scf27 99.66 True fake: not a misassembly (possible transposable element) 89047265 89049274 1406693 1404683 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 77324854 77325806 1406967 1407919 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 105096072 105098185 1410057 1407938 NC_000014.9 scf27 96.61 True fake: not a misassembly (possible transposable element) 77327135 77331988 1410058 1414910 NC_000014.9 scf27 99.88 True relocation, inconsistency = 11707507 89039496 89040381 1415796 1414911 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 105086509 105091995 1421608 1416123 NC_000014.9 scf27 99.87 True fake: not a misassembly (possible transposable element) 89033576 89035011 1423044 1421609 NC_000014.9 scf27 100.0 True relocation, inconsistency = 11687592 77336204 77345983 1423045 1432850 NC_000014.9 scf27 99.52 True relocation, inconsistency = 13807928 91153912 91156198 1432851 1435137 NC_000014.9 scf27 99.91 True relocation, inconsistency = 2130032 89021752 89023879 1437265 1435138 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 105069392 105075233 1443313 1437472 NC_000014.9 scf27 99.79 True fake: not a misassembly (possible transposable element) 89016479 89017317 1444152 1443314 NC_000014.9 scf27 100.0 True relocation, inconsistency = 11661214 77354489 77355264 1444153 1444928 NC_000014.9 scf27 100.0 True relocation, inconsistency = 13808122 91163522 91164162 1445064 1445704 NC_000014.9 scf27 100.0 True relocation, inconsistency = 2147821 88994784 89015699 1466628 1445706 NC_000014.9 scf27 99.91 True relocation, inconsistency = 68480318 20511879 20514465 1466629 1469215 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 77375162 77379612 1469216 1473666 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 20518432 20519504 1473667 1474737 NC_000014.9 scf27 99.74 True relocation, inconsistency = 37571351 58090856 58096128 1480010 1474738 NC_000014.9 scf27 100.0 True relocation, inconsistency = -30892025 88980952 88982880 1481939 1480011 NC_000014.9 scf27 100.0 True relocation, inconsistency = 11590522 77386797 77389929 1482439 1485569 NC_000014.9 scf27 99.84 True relocation, inconsistency = -56861240 20528690 20538499 1485570 1495379 NC_000014.9 scf27 99.9 True relocation, inconsistency = 42308635 62847139 62853999 1502241 1495384 NC_000014.9 scf27 99.93 True fake: not a misassembly (possible transposable element) 88959826 88962653 1505069 1502242 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 62843499 62845066 1506637 1505070 NC_000014.9 scf27 100.0 True relocation, inconsistency = 14560156 77405223 77408912 1506638 1510316 NC_000014.9 scf27 99.62 True relocation, inconsistency = 11543523 88952450 88957493 1515374 1510331 NC_000014.9 scf27 99.98 True relocation, inconsistency = 30892461 58054870 58059972 1520493 1515391 NC_000014.9 scf27 99.9 True relocation, inconsistency = 33163970 91223958 91225820 1520509 1522371 NC_000014.9 scf27 99.89 True relocation, inconsistency = 2277682 88942534 88946275 1526115 1522372 NC_000014.9 scf27 99.68 True relocation, inconsistency = 30892505 58049278 58050027 1526866 1526117 NC_000014.9 scf27 99.87 True relocation, inconsistency = 33179536 91229564 91235803 1526867 1533098 NC_000014.9 scf27 99.87 True relocation, inconsistency = 28409483 62819158 62820080 1534021 1533099 NC_000014.9 scf27 99.89 True relocation, inconsistency = 14606523 77426864 77430615 1534282 1538033 NC_000014.9 scf27 99.92 True relocation, inconsistency = 11501631 88932247 88933379 1539166 1538034 NC_000014.9 scf27 99.91 True relocation, inconsistency = 2306839 91240219 91240760 1539167 1539708 NC_000014.9 scf27 99.82 True fake: not a misassembly (possible transposable element) 77431708 77434934 1539893 1543119 NC_000014.9 scf27 99.97 True fake: not a misassembly (possible transposable element) 91243387 91244318 1543120 1544047 NC_000014.9 scf27 99.57 True relocation, inconsistency = 28431959 62799860 62811427 1555615 1544048 NC_000014.9 scf27 99.88 True relocation, inconsistency = -26119257 88918375 88919116 1556357 1555616 NC_000014.9 scf27 100.0 True relocation, scaffold gap is present, inconsistency = 2333331 91252599 91253474 1556509 1557384 NC_000014.9 scf27 100.0 True relocation, inconsistency = 28453710 62797960 62798888 1558313 1557385 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 88911765 88917165 1563730 1558332 NC_000014.9 scf27 99.83 True fake: not a misassembly (possible transposable element) 62784106 62793330 1572956 1563731 NC_000014.9 scf27 99.87 True relocation, inconsistency = 28472232 91265563 91266445 1572957 1573839 NC_000014.9 scf27 100.0 True relocation, inconsistency = -13808152 77458294 77460926 1573840 1576471 NC_000014.9 scf27 99.92 True relocation, inconsistency = 11438247 88899174 88901347 1578668 1576472 NC_000014.9 scf27 98.95 True relocation, inconsistency = 26118520 62772615 62780627 1586702 1578695 NC_000014.9 scf27 99.81 True relocation, inconsistency = -26120080 88884964 88892694 1594433 1586703 NC_000014.9 scf27 99.99 True relocation, inconsistency = 2391206 91283901 91287658 1594434 1598190 NC_000014.9 scf27 99.87 True relocation, inconsistency = 28522047 62761216 62761853 1598827 1598191 NC_000014.9 scf27 99.84 True fake: not a misassembly (possible transposable element) 77477903 77479458 1598832 1600387 NC_000014.9 scf27 99.81 True fake: not a misassembly (possible transposable element) 62759566 62760504 1601326 1600388 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 77479556 77481255 1601358 1603051 NC_000014.9 scf27 99.35 True fake: not a misassembly (possible transposable element) 62758111 62759224 1604165 1603052 NC_000014.9 scf27 99.91 True relocation, inconsistency = 28532309 91291534 91293244 1604166 1605876 NC_000014.9 scf27 99.82 True relocation, inconsistency = 2414289 88862590 88877244 1620531 1605877 NC_000014.9 scf27 99.99 True relocation, scaffold gap is present, inconsistency = 26118858 62742289 62743505 1621974 1620758 NC_000014.9 scf27 100.0 True fake: not a misassembly (possible transposable element) 43694096 43695724 1623603 1621975 NC_000014.9 scf27 99.88 True fake: not a misassembly (possible transposable element) 62731208 62741510 1633912 1623610 NC_000014.9 scf27 99.97 True relocation, inconsistency = -26121289 88848128 88852496 1638281 1633913 NC_000014.9 scf27 100.0 True relocation, inconsistency = 45167178 43675885 43680939 1643346 1638292 NC_000014.9 scf27 99.94 True relocation, inconsistency = -19047407 62721506 62723291 1645132 1643347 NC_000014.9 scf27 99.66 True relocation, inconsistency = -26121274 88826482 88842779 1661430 1645133 NC_000014.9 scf27 99.99 True relocation, inconsistency = 45165677 43657116 43660804 1665119 1661431 NC_000014.9 scf27 99.67 True relocation, inconsistency = -19045933 62689225 62703048 1678938 1665120 NC_000014.9 scf27 99.93 True relocation, inconsistency = 19043565 43637068 43645659 1687530 1678939 NC_000014.9 scf27 99.98 True relocation, inconsistency = -19045148 62663933 62682215 1705819 1687531 NC_000014.9 scf27 99.85 True relocation, inconsistency = 19041834 43620893 43622098 1707025 1705820 NC_000014.9 scf27 100.0 True relocation, inconsistency = -45169804 88789688 88790689 1708034 1707033 NC_000014.9 scf27 100.0 True relocation, inconsistency = 26127233 62650811 62662454 1719678 1708035 NC_000014.9 scf27 99.85 True fake: not a misassembly (possible transposable element) 88773889 88780534 1726330 1719685 NC_000014.9 scf27 99.95 True fake: not a misassembly (possible transposable element) 62643882 62646315 1728869 1726436 NC_000014.9 scf27 99.96 True relocation, inconsistency = -26128338 88766746 88772219 1734343 1728870 NC_000014.9 scf27 99.98 True fake: scaffold gap size wrong estimation (local) 88763469 88765991 1738330 1735808 NC_000014.9 scf27 99.92 True fake: scaffold gap size wrong estimation (local) 88762375 88763352 1740331 1739354 NC_000014.9 scf27 99.8 True indel: indel (> 5bp) 88761626 88762322 1741039 1740343 NC_000014.9 scf27 99.86 True fake: scaffold gap size wrong estimation (local) 88760343 88761279 1743946 1743010 NC_000014.9 scf27 99.79 True local misassembly 88758408 88759387 1744926 1743947 NC_000014.9 scf27 100.0 True fake: scaffold gap size wrong estimation (local) 88734343 88758058 1771227 1746750 NC_000014.9 scf27 99.77 True fake: scaffold gap size wrong estimation (local) 88732401 88734438 1773990 1771953 NC_000014.9 scf27 99.95 True fake: scaffold gap size wrong estimation (local) 88713756 88731215 1794893 1775950 NC_000014.9 scf27 99.65 True fake: scaffold gap size wrong estimation (local) 88684787 88713259 1825432 1796159 NC_000014.9 scf27 99.93 True CONTIG scf27 1825432 misassembled 66206062 66250741 47 47293 NC_000014.9 scf28 99.58 True fake: scaffold gap size wrong estimation (local) 66250660 66257891 47976 55207 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66257812 66278052 55889 76129 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66278084 66287958 77030 87582 NC_000014.9 scf28 97.76 True fake: scaffold gap size wrong estimation (local) 66287872 66289288 88314 89730 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66290535 66294359 91653 95477 NC_000014.9 scf28 99.76 True fake: scaffold gap size wrong estimation (local) 66294332 66295173 97029 97870 NC_000014.9 scf28 100.0 True local misassembly 66295931 66296733 97871 98673 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66296775 66297574 100264 101063 NC_000014.9 scf28 99.88 True fake: scaffold gap size wrong estimation (local) 66300282 66302123 104864 106705 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66302578 66304177 108087 109686 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66304087 66309726 110411 116050 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66309637 66327669 116709 135471 NC_000014.9 scf28 99.77 True fake: scaffold gap size wrong estimation (local) 66327857 66334000 136410 142553 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66333938 66334564 143399 144025 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66334983 66336504 144294 145815 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66336410 66337806 146544 147940 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66338492 66343417 149394 154319 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66344145 66347645 157147 160647 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66347576 66352979 161385 166788 NC_000014.9 scf28 99.98 True fake: scaffold gap size wrong estimation (local) 66352880 66358200 167433 172755 NC_000014.9 scf28 99.94 True fake: scaffold gap size wrong estimation (local) 66358098 66396567 173352 213334 NC_000014.9 scf28 99.86 True fake: scaffold gap size wrong estimation (local) 66397852 66441419 215277 259598 NC_000014.9 scf28 99.87 True fake: scaffold gap size wrong estimation (local) 66441320 66447227 260274 266179 NC_000014.9 scf28 99.95 True fake: scaffold gap size wrong estimation (local) 66447129 66460383 266834 280088 NC_000014.9 scf28 99.99 True fake: scaffold gap size wrong estimation (local) 66460478 66461300 280912 281734 NC_000014.9 scf28 100.0 True indel: indel (> 5bp) 66461301 66462793 281813 283305 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66462975 66463578 284150 284753 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66463750 66468381 285936 290567 NC_000014.9 scf28 99.98 True fake: scaffold gap size wrong estimation (local) 66468296 66470191 291238 293133 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66470098 66474098 293807 297807 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66474949 66480452 299374 304776 NC_000014.9 scf28 98.16 True fake: scaffold gap size wrong estimation (local) 66480359 66484159 305390 309190 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66484202 66492408 310153 318176 NC_000014.9 scf28 97.77 True fake: scaffold gap size wrong estimation (local) 66492561 66516189 319113 342736 NC_000014.9 scf28 99.98 True fake: scaffold gap size wrong estimation (local) 66516107 66517147 343159 344218 NC_000014.9 scf28 97.83 True fake: scaffold gap size wrong estimation (local) 66517097 66525280 345086 353266 NC_000014.9 scf28 99.95 True fake: scaffold gap size wrong estimation (local) 66525553 66526245 354231 354937 NC_000014.9 scf28 98.02 True fake: scaffold gap size wrong estimation (local) 66526316 66527329 355037 356050 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66527234 66541077 357015 371693 NC_000014.9 scf28 99.63 True fake: scaffold gap size wrong estimation (local) 66540995 66544695 372380 376080 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66546688 66548200 378691 380203 NC_000014.9 scf28 100.0 True fake: scaffold gap size wrong estimation (local) 66548402 66557329 381272 390979 NC_000014.9 scf28 99.52 True fake: scaffold gap size wrong estimation (local) 66557234 66558822 391645 393237 NC_000014.9 scf28 99.75 True CONTIG scf28 393237 correct 25856519 25857029 1 522 NC_000014.9 scf29 97.89 True fake: scaffold gap size wrong estimation (local) 25857700 25866263 2042 11351 NC_000014.9 scf29 99.91 True fake: scaffold gap size wrong estimation (local) 25868035 25870897 13506 16365 NC_000014.9 scf29 99.76 True fake: scaffold gap size wrong estimation (local) 25871076 25904019 17274 50231 NC_000014.9 scf29 99.88 True fake: scaffold gap size wrong estimation (local) 25904116 25918437 51112 65433 NC_000014.9 scf29 99.99 True fake: scaffold gap size wrong estimation (local) 25918339 25924358 66111 72130 NC_000014.9 scf29 99.95 True fake: scaffold gap size wrong estimation (local) 25924476 25926928 72289 75470 NC_000014.9 scf29 97.68 True fake: scaffold gap size wrong estimation (local) 25926792 25927669 75950 76861 NC_000014.9 scf29 96.16 True indel: indel (> 5bp) 25927767 25933170 76972 83400 NC_000014.9 scf29 99.37 True fake: scaffold gap size wrong estimation (local) 25933078 25937449 84018 88389 NC_000014.9 scf29 99.98 True fake: scaffold gap size wrong estimation (local) 25937365 25947696 89043 99373 NC_000014.9 scf29 99.93 True fake: scaffold gap size wrong estimation (local) 25948824 25960369 101280 114404 NC_000014.9 scf29 99.6 True CONTIG scf29 114404 correct 29005302 29007341 1 2039 NC_000014.9 scf30 99.9 True fake: scaffold gap size wrong estimation (local) 29007245 29015890 2695 11340 NC_000014.9 scf30 99.99 True fake: scaffold gap size wrong estimation (local) 29015799 29017787 12085 14073 NC_000014.9 scf30 100.0 True fake: scaffold gap size wrong estimation (local) 29018104 29023207 15143 20261 NC_000014.9 scf30 99.61 True fake: scaffold gap size wrong estimation (local) 29023960 29026478 22104 24649 NC_000014.9 scf30 98.86 True fake: scaffold gap size wrong estimation (local) 29026382 29027003 25600 26221 NC_000014.9 scf30 100.0 True local misassembly 29027185 29027726 26222 26763 NC_000014.9 scf30 100.0 True fake: scaffold gap size wrong estimation (local) 29027628 29046167 27724 46327 NC_000014.9 scf30 99.59 True fake: scaffold gap size wrong estimation (local) 29046343 29046925 47366 47948 NC_000014.9 scf30 100.0 True local misassembly 29047122 29051346 48008 52230 NC_000014.9 scf30 99.93 True fake: scaffold gap size wrong estimation (local) 29051253 29069032 52954 71478 NC_000014.9 scf30 99.75 True fake: scaffold gap size wrong estimation (local) 29068940 29090055 72174 93289 NC_000014.9 scf30 99.93 True fake: scaffold gap size wrong estimation (local) 29089980 29095670 93978 99655 NC_000014.9 scf30 99.7 True fake: scaffold gap size wrong estimation (local) 29095840 29114910 100556 119632 NC_000014.9 scf30 99.77 True fake: scaffold gap size wrong estimation (local) 29115080 29121160 120504 126584 NC_000014.9 scf30 99.82 True fake: scaffold gap size wrong estimation (local) 29121355 29122052 127345 128052 NC_000014.9 scf30 98.31 True fake: scaffold gap size wrong estimation (local) 29121976 29134047 128974 141756 NC_000014.9 scf30 99.06 True fake: scaffold gap size wrong estimation (local) 29134275 29180506 142727 189801 NC_000014.9 scf30 99.84 True fake: scaffold gap size wrong estimation (local) 29180411 29208548 190512 219447 NC_000014.9 scf30 99.91 True fake: scaffold gap size wrong estimation (local) 29209415 29250293 221043 263479 NC_000014.9 scf30 99.85 True fake: scaffold gap size wrong estimation (local) 29252054 29258843 265938 273478 NC_000014.9 scf30 98.55 True fake: scaffold gap size wrong estimation (local) 29259433 29263998 274292 278857 NC_000014.9 scf30 99.8 True fake: scaffold gap size wrong estimation (local) 29263916 29284061 279509 300407 NC_000014.9 scf30 99.76 True CONTIG scf30 300407 correct 54239897 54272844 8 32957 NC_000014.9 scf31 99.93 True fake: scaffold gap size wrong estimation (local) 54272753 54278841 33641 39632 NC_000014.9 scf31 98.33 True fake: scaffold gap size wrong estimation (local) 54278754 54280880 40367 42493 NC_000014.9 scf31 99.86 True fake: scaffold gap size wrong estimation (local) 54280783 54288933 43410 52370 NC_000014.9 scf31 96.82 True fake: scaffold gap size wrong estimation (local) 54288847 54293448 53107 58530 NC_000014.9 scf31 98.99 True fake: scaffold gap size wrong estimation (local) 54293351 54321932 59236 88601 NC_000014.9 scf31 99.77 True fake: scaffold gap size wrong estimation (local) 54322077 54323702 89573 91198 NC_000014.9 scf31 99.94 True fake: scaffold gap size wrong estimation (local) 54323926 54324506 91963 92543 NC_000014.9 scf31 99.83 True fake: scaffold gap size wrong estimation (local) 54324526 54342265 93645 111384 NC_000014.9 scf31 99.95 True fake: scaffold gap size wrong estimation (local) 54342166 54344405 112077 114316 NC_000014.9 scf31 99.96 True fake: scaffold gap size wrong estimation (local) 54344315 54351557 115006 122091 NC_000014.9 scf31 97.83 True fake: scaffold gap size wrong estimation (local) 54351978 54371409 123382 144614 NC_000014.9 scf31 98.97 True fake: scaffold gap size wrong estimation (local) 54371317 54372715 145300 146698 NC_000014.9 scf31 100.0 True fake: scaffold gap size wrong estimation (local) 54372909 54376752 146887 151458 NC_000014.9 scf31 96.57 True fake: scaffold gap size wrong estimation (local) 54376653 54379533 152236 155138 NC_000014.9 scf31 99.24 True fake: scaffold gap size wrong estimation (local) 54380388 54381347 157467 158426 NC_000014.9 scf31 100.0 True local misassembly 54382121 54382803 158427 159109 NC_000014.9 scf31 100.0 True fake: scaffold gap size wrong estimation (local) 54382742 54383535 159727 160520 NC_000014.9 scf31 100.0 True fake: scaffold gap size wrong estimation (local) 54383443 54389944 161303 167804 NC_000014.9 scf31 99.98 True fake: scaffold gap size wrong estimation (local) 54390118 54392788 168741 171411 NC_000014.9 scf31 100.0 True fake: scaffold gap size wrong estimation (local) 54393292 54402099 172925 182440 NC_000014.9 scf31 98.21 True fake: scaffold gap size wrong estimation (local) 54402560 54403112 183703 184255 NC_000014.9 scf31 100.0 True CONTIG scf31 184255 correct 42143318 42151223 7907 1 NC_000014.9 scf32 99.86 True fake: scaffold gap size wrong estimation (local) 42142307 42143509 9732 8507 NC_000014.9 scf32 97.32 True fake: scaffold gap size wrong estimation (local) 42141258 42142158 10744 9844 NC_000014.9 scf32 99.56 True fake: scaffold gap size wrong estimation (local) 42121756 42141243 31839 11608 NC_000014.9 scf32 99.88 True fake: scaffold gap size wrong estimation (local) 42120185 42121354 34177 33008 NC_000014.9 scf32 99.91 True fake: scaffold gap size wrong estimation (local) 42117686 42120260 37529 34955 NC_000014.9 scf32 99.88 True fake: scaffold gap size wrong estimation (local) 42113207 42117760 42770 38217 NC_000014.9 scf32 99.91 True fake: scaffold gap size wrong estimation (local) 42108471 42113305 49066 44210 NC_000014.9 scf32 99.2 True fake: scaffold gap size wrong estimation (local) 42098356 42108560 59943 49739 NC_000014.9 scf32 99.97 True fake: scaffold gap size wrong estimation (local) 42093024 42096739 66010 62295 NC_000014.9 scf32 99.95 True fake: scaffold gap size wrong estimation (local) 42084224 42092739 75494 66979 NC_000014.9 scf32 99.96 True fake: scaffold gap size wrong estimation (local) 42078127 42084317 82348 76158 NC_000014.9 scf32 99.71 True fake: scaffold gap size wrong estimation (local) 42070939 42078202 90276 82989 NC_000014.9 scf32 99.62 True fake: scaffold gap size wrong estimation (local) 42062612 42070992 99845 90934 NC_000014.9 scf32 98.78 True fake: scaffold gap size wrong estimation (local) 42060276 42062702 103124 100698 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 42053408 42060373 110737 103771 NC_000014.9 scf32 99.91 True fake: scaffold gap size wrong estimation (local) 42051600 42053486 113356 111470 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 42039026 42051205 128735 114627 NC_000014.9 scf32 99.04 True fake: scaffold gap size wrong estimation (local) 42036627 42038483 131979 130123 NC_000014.9 scf32 99.95 True fake: scaffold gap size wrong estimation (local) 42035587 42036534 133085 132138 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 42032246 42035685 137332 133893 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 42023325 42032323 146903 138004 NC_000014.9 scf32 98.89 True fake: scaffold gap size wrong estimation (local) 42017413 42023165 153617 147847 NC_000014.9 scf32 99.69 True fake: scaffold gap size wrong estimation (local) 42014414 42017190 157212 154436 NC_000014.9 scf32 99.96 True fake: scaffold gap size wrong estimation (local) 42011020 42014492 161300 157828 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 41977063 42010609 196404 162465 NC_000014.9 scf32 99.37 True fake: scaffold gap size wrong estimation (local) 41964244 41976652 210911 197710 NC_000014.9 scf32 98.77 True fake: scaffold gap size wrong estimation (local) 41963261 41964000 212027 211253 NC_000014.9 scf32 95.48 True fake: scaffold gap size wrong estimation (local) 41961963 41962968 213849 212844 NC_000014.9 scf32 100.0 True fake: scaffold gap size wrong estimation (local) 41952810 41962054 225243 215187 NC_000014.9 scf32 99.5 True fake: scaffold gap size wrong estimation (local) 41947622 41952905 231112 225829 NC_000014.9 scf32 99.87 True fake: scaffold gap size wrong estimation (local) 41919712 41947685 260117 232105 NC_000014.9 scf32 99.81 True fake: scaffold gap size wrong estimation (local) 41911583 41919806 269004 260777 NC_000014.9 scf32 99.94 True CONTIG scf32 269004 correct 83204622 83220939 1 16318 NC_000014.9 scf33 99.88 True fake: scaffold gap size wrong estimation (local) 83221494 83222546 17699 18751 NC_000014.9 scf33 99.72 True fake: scaffold gap size wrong estimation (local) 83222667 83226761 19621 23730 NC_000014.9 scf33 99.54 True fake: scaffold gap size wrong estimation (local) 83226672 83229243 24421 26993 NC_000014.9 scf33 99.88 True fake: scaffold gap size wrong estimation (local) 83229146 83260025 27716 58587 NC_000014.9 scf33 99.74 True fake: scaffold gap size wrong estimation (local) 83259928 83264096 59222 63384 NC_000014.9 scf33 99.71 True fake: scaffold gap size wrong estimation (local) 83264312 83266144 64431 66263 NC_000014.9 scf33 99.95 True fake: scaffold gap size wrong estimation (local) 83266057 83269216 67019 70173 NC_000014.9 scf33 99.81 True fake: scaffold gap size wrong estimation (local) 83269120 83281728 70771 84112 NC_000014.9 scf33 99.59 True fake: scaffold gap size wrong estimation (local) 83281647 83285317 84776 88442 NC_000014.9 scf33 99.81 True fake: scaffold gap size wrong estimation (local) 83285510 83341893 89359 147169 NC_000014.9 scf33 99.74 True fake: scaffold gap size wrong estimation (local) 83342307 83366805 149670 174206 NC_000014.9 scf33 99.81 True fake: scaffold gap size wrong estimation (local) 83366792 83395915 175027 204764 NC_000014.9 scf33 99.41 True fake: not a misassembly (possible transposable element) 50911072 50912602 204765 206295 NC_000014.9 scf33 99.93 True fake: not a misassembly (possible transposable element) 83396652 83411762 206296 221408 NC_000014.9 scf33 99.95 True fake: not a misassembly (possible transposable element) 50925366 50926753 221409 222796 NC_000014.9 scf33 100.0 True fake: not a misassembly (possible transposable element) 83412458 83418303 222801 228645 NC_000014.9 scf33 99.85 True relocation, inconsistency = -32486439 50931865 50936622 228646 233403 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 50936525 50938475 234185 236134 NC_000014.9 scf33 99.95 True fake: not a misassembly (possible transposable element) 83423481 83428133 236135 240791 NC_000014.9 scf33 99.85 True fake: not a misassembly (possible transposable element) 50942383 50945603 240792 244017 NC_000014.9 scf33 99.81 True relocation, inconsistency = 32484181 83429785 83434427 244018 248570 NC_000014.9 scf33 97.93 True fake: scaffold gap size wrong estimation (local) 83434333 83437936 249174 252786 NC_000014.9 scf33 99.45 True fake: not a misassembly (possible transposable element) 50952314 50953028 252787 253501 NC_000014.9 scf33 99.86 True fake: not a misassembly (possible transposable element) 83438941 83453436 254547 269042 NC_000014.9 scf33 99.87 True fake: not a misassembly (possible transposable element) 50965527 50966456 269048 269977 NC_000014.9 scf33 100.0 True fake: not a misassembly (possible transposable element) 83453626 83485472 269978 301827 NC_000014.9 scf33 99.92 True relocation, inconsistency = -32491600 50993873 51001246 301828 309201 NC_000014.9 scf33 99.89 True relocation, inconsistency = 32490045 83491443 83494215 309353 312129 NC_000014.9 scf33 99.64 True relocation, inconsistency = 40547041 42938877 42944401 317654 312130 NC_000014.9 scf33 99.98 True relocation, inconsistency = 8064501 51008903 51011020 317655 319772 NC_000014.9 scf33 100.0 True relocation, inconsistency = 32490049 83501070 83505269 319773 323973 NC_000014.9 scf33 99.88 True relocation, inconsistency = 40567678 42923793 42933391 333572 323974 NC_000014.9 scf33 99.96 True fake: not a misassembly (possible transposable element) 51021872 51027190 333573 338903 NC_000014.9 scf33 99.49 True fake: not a misassembly (possible transposable element) 42905150 42919259 353010 338904 NC_000014.9 scf33 99.88 True fake: scaffold gap size wrong estimation (local) 42902823 42905234 356117 353705 NC_000014.9 scf33 99.88 True relocation, inconsistency = 8136810 51042045 51043297 356118 357370 NC_000014.9 scf33 99.84 True relocation, inconsistency = 32488647 83531945 83539561 357371 364987 NC_000014.9 scf33 99.89 True fake: not a misassembly (possible transposable element) 42889120 42895906 371775 364988 NC_000014.9 scf33 99.9 True fake: not a misassembly (possible transposable element) 83544772 83545662 371776 372666 NC_000014.9 scf33 100.0 True relocation, inconsistency = -32490576 51055087 51059774 372667 377354 NC_000014.9 scf33 99.94 True relocation, inconsistency = 8170738 42883117 42884324 378586 377379 NC_000014.9 scf33 100.0 True relocation, inconsistency = 40665567 83549895 83564406 378590 393101 NC_000014.9 scf33 99.97 True relocation, inconsistency = 40679821 42868784 42870048 394391 393127 NC_000014.9 scf33 99.92 True relocation, inconsistency = 8203009 51073058 51085250 394392 406573 NC_000014.9 scf33 99.81 True relocation, inconsistency = 8215607 42854901 42857450 409123 406574 NC_000014.9 scf33 99.92 True relocation, inconsistency = 3676076 39177926 39178824 409124 410021 NC_000014.9 scf33 99.89 True relocation, inconsistency = 44401024 83579849 83580485 410022 410658 NC_000014.9 scf33 99.84 True relocation, inconsistency = -32492952 51087534 51104065 410659 427187 NC_000014.9 scf33 99.92 True relocation, inconsistency = -11911441 39192706 39193812 427269 428378 NC_000014.9 scf33 99.37 True relocation, inconsistency = 44401239 83595052 83602462 428379 435771 NC_000014.9 scf33 99.69 True fake: not a misassembly (possible transposable element) 42831110 42834277 438939 435772 NC_000014.9 scf33 99.91 True fake: not a misassembly (possible transposable element) 83604843 83614347 438940 448444 NC_000014.9 scf33 99.87 True fake: not a misassembly (possible transposable element) 51122147 51124865 448445 451163 NC_000014.9 scf33 100.0 True fake: not a misassembly (possible transposable element) 83616312 83619766 451195 454651 NC_000014.9 scf33 99.86 True relocation, inconsistency = 40797608 42811423 42818663 461749 454692 NC_000014.9 scf33 97.33 True relocation, inconsistency = 3590799 39219525 39220539 461834 462841 NC_000014.9 scf33 99.21 True relocation, inconsistency = 44405844 83626397 83627400 462855 463858 NC_000014.9 scf33 99.9 True relocation, inconsistency = 40816371 42800050 42810005 473827 463879 NC_000014.9 scf33 99.77 True relocation, inconsistency = 3570855 39228666 39229194 473828 474356 NC_000014.9 scf33 100.0 True relocation, inconsistency = 11914513 51143708 51144219 474357 474868 NC_000014.9 scf33 100.0 True relocation, inconsistency = 32489524 83633744 83639397 474869 480522 NC_000014.9 scf33 99.84 True relocation, inconsistency = -44405728 39233670 39239469 480523 486334 NC_000014.9 scf33 99.72 True relocation, scaffold gap is present, inconsistency = 3541044 42780635 42790728 496557 486456 NC_000014.9 scf33 99.7 True relocation, inconsistency = 3530022 39247473 39250612 496558 499696 NC_000014.9 scf33 99.87 True relocation, inconsistency = 11913827 51164440 51166106 499697 501363 NC_000014.9 scf33 99.88 True fake: not a misassembly (possible transposable element) 42774400 42777326 504299 501364 NC_000014.9 scf33 99.56 True fake: not a misassembly (possible transposable element) 51168284 51169797 504300 505813 NC_000014.9 scf33 99.87 True relocation, inconsistency = -11914559 39255239 39257326 505814 507901 NC_000014.9 scf33 99.9 True relocation, inconsistency = 3507896 42765223 42771623 514301 507902 NC_000014.9 scf33 99.78 True fake: not a misassembly (possible transposable element) 51175929 51178090 514302 516463 NC_000014.9 scf33 100.0 True fake: not a misassembly (possible transposable element) 42758257 42764039 522256 516464 NC_000014.9 scf33 99.31 True fake: not a misassembly (possible transposable element) 51181262 51185169 522257 526184 NC_000014.9 scf33 99.39 True fake: not a misassembly (possible transposable element) 42755846 42756490 526829 526185 NC_000014.9 scf33 100.0 True local misassembly 42754737 42755463 527556 526830 NC_000014.9 scf33 99.72 True fake: not a misassembly (possible transposable element) 51185791 51191818 527557 533592 NC_000014.9 scf33 99.73 True fake: not a misassembly (possible transposable element) 42747652 42750207 536718 534173 NC_000014.9 scf33 99.61 True fake: not a misassembly (possible transposable element) 51194612 51196886 538028 540295 NC_000014.9 scf33 99.6 True fake: not a misassembly (possible transposable element) 42738801 42744808 546303 540296 NC_000014.9 scf33 99.98 True relocation, inconsistency = 8457359 51202168 51213720 546304 557855 NC_000014.9 scf33 99.86 True relocation, inconsistency = 8473420 42725994 42728747 560559 557856 NC_000014.9 scf33 97.15 True fake: scaffold gap size wrong estimation (local) 42709566 42725847 577784 561503 NC_000014.9 scf33 99.97 True fake: scaffold gap size wrong estimation (local) 42708059 42709437 580102 578724 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42705232 42707780 583709 581171 NC_000014.9 scf33 99.53 True fake: scaffold gap size wrong estimation (local) 42698364 42705322 592204 584498 NC_000014.9 scf33 99.64 True fake: scaffold gap size wrong estimation (local) 42682377 42698422 609630 592902 NC_000014.9 scf33 99.9 True fake: scaffold gap size wrong estimation (local) 42679118 42682475 613600 610245 NC_000014.9 scf33 99.94 True fake: scaffold gap size wrong estimation (local) 42666261 42679204 627270 614294 NC_000014.9 scf33 99.54 True fake: scaffold gap size wrong estimation (local) 42665696 42666348 628916 628264 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42657867 42665035 638576 630646 NC_000014.9 scf33 97.63 True fake: scaffold gap size wrong estimation (local) 42653115 42657964 644127 639281 NC_000014.9 scf33 99.92 True fake: scaffold gap size wrong estimation (local) 42647968 42653211 650052 644805 NC_000014.9 scf33 99.85 True fake: scaffold gap size wrong estimation (local) 42645094 42648040 653711 650765 NC_000014.9 scf33 99.93 True fake: scaffold gap size wrong estimation (local) 42641935 42644032 657564 655467 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42619074 42640738 682584 659428 NC_000014.9 scf33 99.87 True fake: scaffold gap size wrong estimation (local) 42608485 42619173 696641 683202 NC_000014.9 scf33 99.27 True local misassembly 42607360 42607966 697810 697205 NC_000014.9 scf33 99.67 True fake: scaffold gap size wrong estimation (local) 42603387 42606659 703736 699440 NC_000014.9 scf33 98.88 True fake: scaffold gap size wrong estimation (local) 42601119 42603136 706868 704850 NC_000014.9 scf33 99.75 True fake: scaffold gap size wrong estimation (local) 42581926 42601179 727608 707617 NC_000014.9 scf33 99.87 True fake: scaffold gap size wrong estimation (local) 42571963 42581673 738433 728726 NC_000014.9 scf33 99.82 True fake: scaffold gap size wrong estimation (local) 42568542 42572044 742634 739132 NC_000014.9 scf33 99.86 True fake: scaffold gap size wrong estimation (local) 42551966 42566833 759738 744871 NC_000014.9 scf33 99.92 True fake: scaffold gap size wrong estimation (local) 42534624 42552062 777909 760472 NC_000014.9 scf33 99.94 True fake: scaffold gap size wrong estimation (local) 42533628 42534613 779800 778815 NC_000014.9 scf33 100.0 True local misassembly 42532694 42533473 780580 779801 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42516234 42532716 799573 782107 NC_000014.9 scf33 99.64 True fake: scaffold gap size wrong estimation (local) 42502590 42516125 814657 800415 NC_000014.9 scf33 96.03 True fake: scaffold gap size wrong estimation (local) 42501498 42502678 816658 815478 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42492846 42499892 825940 818897 NC_000014.9 scf33 99.84 True fake: scaffold gap size wrong estimation (local) 42486033 42492935 833492 826590 NC_000014.9 scf33 99.96 True fake: scaffold gap size wrong estimation (local) 42482472 42485812 837834 834546 NC_000014.9 scf33 97.03 True fake: scaffold gap size wrong estimation (local) 42446019 42481645 879226 840417 NC_000014.9 scf33 99.34 True fake: scaffold gap size wrong estimation (local) 42439619 42445671 886384 880414 NC_000014.9 scf33 98.58 True fake: scaffold gap size wrong estimation (local) 42435699 42439716 891139 887081 NC_000014.9 scf33 98.89 True fake: scaffold gap size wrong estimation (local) 42434285 42435201 893294 892378 NC_000014.9 scf33 99.89 True fake: scaffold gap size wrong estimation (local) 42433490 42434381 894711 893807 NC_000014.9 scf33 98.56 True fake: scaffold gap size wrong estimation (local) 42427792 42433579 901292 895443 NC_000014.9 scf33 98.85 True fake: scaffold gap size wrong estimation (local) 42414658 42425864 915024 903818 NC_000014.9 scf33 99.93 True fake: scaffold gap size wrong estimation (local) 42410162 42414751 920237 915648 NC_000014.9 scf33 99.96 True fake: scaffold gap size wrong estimation (local) 42405489 42410045 925415 920867 NC_000014.9 scf33 99.71 True fake: scaffold gap size wrong estimation (local) 42393805 42404873 939425 926830 NC_000014.9 scf33 99.7 True fake: scaffold gap size wrong estimation (local) 42388927 42393188 945046 940785 NC_000014.9 scf33 99.98 True fake: scaffold gap size wrong estimation (local) 42387837 42389003 946848 945682 NC_000014.9 scf33 99.74 True fake: scaffold gap size wrong estimation (local) 42372563 42387929 963778 947719 NC_000014.9 scf33 99.9 True fake: scaffold gap size wrong estimation (local) 42367588 42372656 969514 964446 NC_000014.9 scf33 99.9 True fake: scaffold gap size wrong estimation (local) 42359223 42366794 979379 971051 NC_000014.9 scf33 97.9 True fake: scaffold gap size wrong estimation (local) 42352656 42359306 986736 980084 NC_000014.9 scf33 99.8 True fake: scaffold gap size wrong estimation (local) 42346941 42352754 993219 987419 NC_000014.9 scf33 98.84 True fake: scaffold gap size wrong estimation (local) 42344480 42347038 996356 993856 NC_000014.9 scf33 97.69 True fake: scaffold gap size wrong estimation (local) 42332155 42344578 1009513 997090 NC_000014.9 scf33 99.94 True fake: scaffold gap size wrong estimation (local) 42330322 42332231 1012126 1010218 NC_000014.9 scf33 99.74 True fake: scaffold gap size wrong estimation (local) 42319790 42330204 1023522 1012258 NC_000014.9 scf33 99.73 True fake: scaffold gap size wrong estimation (local) 42310418 42319636 1033640 1024422 NC_000014.9 scf33 99.97 True fake: scaffold gap size wrong estimation (local) 42299028 42310517 1045817 1034328 NC_000014.9 scf33 99.95 True fake: scaffold gap size wrong estimation (local) 42297662 42299120 1048036 1046578 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42292770 42297760 1053806 1048816 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42285179 42291986 1063903 1057096 NC_000014.9 scf33 99.78 True fake: scaffold gap size wrong estimation (local) 42282886 42285270 1066965 1064584 NC_000014.9 scf33 99.87 True fake: scaffold gap size wrong estimation (local) 42282185 42282695 1068646 1068136 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42279539 42280508 1071163 1070181 NC_000014.9 scf33 98.37 True fake: scaffold gap size wrong estimation (local) 42276026 42279438 1075671 1072248 NC_000014.9 scf33 99.53 True fake: scaffold gap size wrong estimation (local) 42273966 42275172 1078490 1077284 NC_000014.9 scf33 100.0 True local misassembly 42272686 42273743 1079566 1078509 NC_000014.9 scf33 100.0 True fake: scaffold gap size wrong estimation (local) 42258023 42272559 1096235 1080929 NC_000014.9 scf33 99.8 True CONTIG scf33 1096235 misassembled 101265419 101266635 1229 1 NC_000014.9 scf34 98.78 True fake: scaffold gap size wrong estimation (local) 101261428 101265508 6013 1931 NC_000014.9 scf34 99.85 True fake: scaffold gap size wrong estimation (local) 101253820 101261524 14416 6712 NC_000014.9 scf34 99.87 True fake: scaffold gap size wrong estimation (local) 101252241 101253895 16851 15196 NC_000014.9 scf34 99.88 True fake: scaffold gap size wrong estimation (local) 101246598 101252333 23383 17648 NC_000014.9 scf34 99.81 True fake: scaffold gap size wrong estimation (local) 101241686 101245229 29032 25489 NC_000014.9 scf34 99.89 True fake: scaffold gap size wrong estimation (local) 101237688 101241779 33821 29729 NC_000014.9 scf34 99.88 True fake: scaffold gap size wrong estimation (local) 101234859 101237768 37426 34517 NC_000014.9 scf34 99.73 True fake: scaffold gap size wrong estimation (local) 101218922 101234956 53928 38105 NC_000014.9 scf34 98.58 True fake: scaffold gap size wrong estimation (local) 101215174 101218676 58494 54992 NC_000014.9 scf34 100.0 True fake: scaffold gap size wrong estimation (local) 101213187 101214817 61308 59678 NC_000014.9 scf34 99.45 True fake: scaffold gap size wrong estimation (local) 101211274 101211965 64135 63444 NC_000014.9 scf34 99.57 True fake: scaffold gap size wrong estimation (local) 101209069 101210742 68662 66989 NC_000014.9 scf34 99.82 True fake: scaffold gap size wrong estimation (local) 101206345 101209061 72240 69524 NC_000014.9 scf34 99.89 True fake: scaffold gap size wrong estimation (local) 101205079 101205927 74706 73858 NC_000014.9 scf34 99.88 True local misassembly 101202600 101204624 76731 74707 NC_000014.9 scf34 99.7 True fake: scaffold gap size wrong estimation (local) 101199837 101202361 80308 77784 NC_000014.9 scf34 98.85 True fake: scaffold gap size wrong estimation (local) 101199245 101199836 82031 81440 NC_000014.9 scf34 99.49 True local misassembly 101197005 101198868 83895 82032 NC_000014.9 scf34 99.79 True fake: scaffold gap size wrong estimation (local) 101189378 101197093 92335 84645 NC_000014.9 scf34 99.48 True fake: scaffold gap size wrong estimation (local) 101184699 101189477 97812 93035 NC_000014.9 scf34 99.9 True fake: scaffold gap size wrong estimation (local) 101172757 101184790 111362 98535 NC_000014.9 scf34 99.63 True fake: scaffold gap size wrong estimation (local) 101169440 101172779 115596 112257 NC_000014.9 scf34 99.79 True fake: scaffold gap size wrong estimation (local) 101154267 101169105 133014 116681 NC_000014.9 scf34 99.11 True fake: scaffold gap size wrong estimation (local) 101145119 101154365 142989 133744 NC_000014.9 scf34 99.95 True fake: scaffold gap size wrong estimation (local) 101143658 101144304 145095 144449 NC_000014.9 scf34 99.85 True local misassembly 101144531 101145113 145707 145096 NC_000014.9 scf34 95.11 True fake: scaffold gap size wrong estimation (local) 101102435 101142551 188691 147002 NC_000014.9 scf34 99.51 True fake: scaffold gap size wrong estimation (local) 101095187 101102248 196733 189682 NC_000014.9 scf34 99.79 True fake: scaffold gap size wrong estimation (local) 101087412 101095016 205994 197872 NC_000014.9 scf34 96.64 True fake: scaffold gap size wrong estimation (local) 101068099 101087494 226877 206718 NC_000014.9 scf34 99.21 True fake: scaffold gap size wrong estimation (local) 101062944 101068169 232848 227635 NC_000014.9 scf34 99.69 True fake: scaffold gap size wrong estimation (local) 101038627 101063042 257939 233523 NC_000014.9 scf34 99.98 True fake: scaffold gap size wrong estimation (local) 101036830 101038307 260428 258951 NC_000014.9 scf34 100.0 True fake: scaffold gap size wrong estimation (local) 101032210 101036902 265984 261292 NC_000014.9 scf34 99.98 True fake: scaffold gap size wrong estimation (local) 101027129 101032209 271805 266725 NC_000014.9 scf34 99.98 True local misassembly 101014530 101025415 282691 271806 NC_000014.9 scf34 99.99 True fake: scaffold gap size wrong estimation (local) 101012870 101014581 290316 288595 NC_000014.9 scf34 99.42 True fake: scaffold gap size wrong estimation (local) 101007045 101012954 296978 291069 NC_000014.9 scf34 99.98 True relocation, inconsistency = 74282337 26703721 26724707 296979 317978 NC_000014.9 scf34 99.66 True fake: scaffold gap size wrong estimation (local) 26724613 26725444 319036 319867 NC_000014.9 scf34 99.76 True fake: scaffold gap size wrong estimation (local) 26726296 26752195 320385 348316 NC_000014.9 scf34 99.39 True fake: scaffold gap size wrong estimation (local) 26752323 26765156 349199 363756 NC_000014.9 scf34 98.96 True fake: scaffold gap size wrong estimation (local) 26765062 26770494 364483 370731 NC_000014.9 scf34 99.05 True fake: scaffold gap size wrong estimation (local) 26770408 26771738 371966 373296 NC_000014.9 scf34 100.0 True fake: scaffold gap size wrong estimation (local) 26772868 26773525 375384 376041 NC_000014.9 scf34 99.85 True fake: scaffold gap size wrong estimation (local) 26773821 26778525 376296 381829 NC_000014.9 scf34 99.41 True fake: scaffold gap size wrong estimation (local) 26778712 26795082 382776 399935 NC_000014.9 scf34 99.67 True fake: scaffold gap size wrong estimation (local) 26794983 26798664 400583 404264 NC_000014.9 scf34 99.92 True fake: scaffold gap size wrong estimation (local) 26799718 26802382 406037 408701 NC_000014.9 scf34 100.0 True fake: scaffold gap size wrong estimation (local) 26802294 26807102 409413 414221 NC_000014.9 scf34 99.96 True fake: scaffold gap size wrong estimation (local) 26807236 26809674 415189 417624 NC_000014.9 scf34 99.71 True fake: scaffold gap size wrong estimation (local) 26809820 26813722 418530 422429 NC_000014.9 scf34 99.87 True fake: scaffold gap size wrong estimation (local) 26813636 26818865 423122 428367 NC_000014.9 scf34 99.58 True fake: scaffold gap size wrong estimation (local) 26818775 26828472 429018 438718 NC_000014.9 scf34 99.91 True fake: scaffold gap size wrong estimation (local) 26828381 26836663 439390 447672 NC_000014.9 scf34 99.89 True fake: scaffold gap size wrong estimation (local) 26836584 26843438 448347 455203 NC_000014.9 scf34 99.81 True fake: scaffold gap size wrong estimation (local) 26843596 26850467 456074 462941 NC_000014.9 scf34 99.85 True fake: scaffold gap size wrong estimation (local) 26850650 26854802 463898 468051 NC_000014.9 scf34 99.95 True fake: scaffold gap size wrong estimation (local) 26854887 26864164 468879 478155 NC_000014.9 scf34 99.92 True fake: scaffold gap size wrong estimation (local) 26864429 26906376 479174 522645 NC_000014.9 scf34 99.28 True fake: scaffold gap size wrong estimation (local) 26906870 26912648 525801 531606 NC_000014.9 scf34 99.4 True fake: scaffold gap size wrong estimation (local) 26912765 26917460 532494 537189 NC_000014.9 scf34 99.96 True fake: scaffold gap size wrong estimation (local) 26917568 26942016 538021 562473 NC_000014.9 scf34 99.89 True fake: scaffold gap size wrong estimation (local) 26942538 26949654 563764 571677 NC_000014.9 scf34 99.5 True fake: scaffold gap size wrong estimation (local) 26950819 26968681 573498 592764 NC_000014.9 scf34 99.02 True fake: scaffold gap size wrong estimation (local) 26968812 26969948 593719 594855 NC_000014.9 scf34 99.91 True local misassembly 26970146 26971392 594906 596152 NC_000014.9 scf34 99.68 True fake: scaffold gap size wrong estimation (local) 26971307 27009303 596950 635674 NC_000014.9 scf34 99.72 True fake: scaffold gap size wrong estimation (local) 27009207 27029172 636338 656279 NC_000014.9 scf34 99.7 True fake: scaffold gap size wrong estimation (local) 27029077 27033825 656981 661566 NC_000014.9 scf34 96.26 True fake: scaffold gap size wrong estimation (local) 27034020 27034948 663035 663963 NC_000014.9 scf34 100.0 True fake: scaffold gap size wrong estimation (local) 27034857 27038959 664779 668877 NC_000014.9 scf34 99.9 True fake: scaffold gap size wrong estimation (local) 27038865 27044150 669552 674837 NC_000014.9 scf34 99.98 True CONTIG scf34 674837 misassembled 47383086 47386166 1 3093 NC_000014.9 scf35 99.29 True fake: scaffold gap size wrong estimation (local) 47386069 47389612 3770 7314 NC_000014.9 scf35 99.77 True fake: scaffold gap size wrong estimation (local) 47389518 47400675 7961 20097 NC_000014.9 scf35 98.83 True fake: scaffold gap size wrong estimation (local) 47400899 47408265 21010 28368 NC_000014.9 scf35 99.66 True fake: scaffold gap size wrong estimation (local) 47408175 47421214 29108 42169 NC_000014.9 scf35 99.71 True fake: scaffold gap size wrong estimation (local) 47421144 47452307 42808 73972 NC_000014.9 scf35 99.86 True fake: scaffold gap size wrong estimation (local) 47452223 47455883 74642 78156 NC_000014.9 scf35 95.74 True fake: scaffold gap size wrong estimation (local) 47455787 47456302 79149 79664 NC_000014.9 scf35 100.0 True local misassembly 47456566 47458007 79665 81106 NC_000014.9 scf35 99.79 True indel: indel (<= 5bp) 47458010 47459637 81107 82734 NC_000014.9 scf35 99.94 True fake: scaffold gap size wrong estimation (local) 47459537 47462143 83429 85924 NC_000014.9 scf35 95.03 True fake: scaffold gap size wrong estimation (local) 47462377 47464139 86985 88747 NC_000014.9 scf35 99.94 True fake: scaffold gap size wrong estimation (local) 47464041 47469258 89417 94628 NC_000014.9 scf35 99.69 True fake: scaffold gap size wrong estimation (local) 47469758 47476853 96017 102896 NC_000014.9 scf35 96.89 True fake: scaffold gap size wrong estimation (local) 47477099 47478615 103963 105479 NC_000014.9 scf35 100.0 True fake: scaffold gap size wrong estimation (local) 47478521 47490675 106312 118466 NC_000014.9 scf35 99.92 True fake: scaffold gap size wrong estimation (local) 47490577 47508862 119113 138138 NC_000014.9 scf35 99.81 True fake: scaffold gap size wrong estimation (local) 47508764 47511194 138847 141277 NC_000014.9 scf35 99.88 True fake: scaffold gap size wrong estimation (local) 47511115 47521882 142001 152768 NC_000014.9 scf35 99.93 True fake: scaffold gap size wrong estimation (local) 47521786 47537297 153376 169716 NC_000014.9 scf35 99.9 True fake: scaffold gap size wrong estimation (local) 47537586 47540217 170705 173336 NC_000014.9 scf35 99.96 True fake: scaffold gap size wrong estimation (local) 47540479 47559628 174433 194373 NC_000014.9 scf35 99.58 True relocation, inconsistency = 47709231 95268860 95275863 194374 201377 NC_000014.9 scf35 99.99 True fake: scaffold gap size wrong estimation (local) 95275766 95277772 202027 204034 NC_000014.9 scf35 99.9 True fake: scaffold gap size wrong estimation (local) 95277887 95292454 205109 221277 NC_000014.9 scf35 99.9 True fake: scaffold gap size wrong estimation (local) 95292429 95293388 223650 224605 NC_000014.9 scf35 99.48 True fake: scaffold gap size wrong estimation (local) 95293291 95306320 225413 238432 NC_000014.9 scf35 99.86 True fake: scaffold gap size wrong estimation (local) 95306226 95313043 239078 245899 NC_000014.9 scf35 99.87 True fake: scaffold gap size wrong estimation (local) 95312950 95319882 246576 253388 NC_000014.9 scf35 98.24 True fake: scaffold gap size wrong estimation (local) 95320117 95324728 254486 259096 NC_000014.9 scf35 99.93 True fake: scaffold gap size wrong estimation (local) 95324859 95325767 259409 260317 NC_000014.9 scf35 99.78 True fake: scaffold gap size wrong estimation (local) 95325688 95331335 261155 266716 NC_000014.9 scf35 98.35 True fake: scaffold gap size wrong estimation (local) 95331245 95339264 267486 275505 NC_000014.9 scf35 99.79 True fake: scaffold gap size wrong estimation (local) 95339165 95342555 276148 279538 NC_000014.9 scf35 99.91 True fake: scaffold gap size wrong estimation (local) 95342786 95344132 280609 281955 NC_000014.9 scf35 99.85 True local misassembly 95344399 95345829 281956 283386 NC_000014.9 scf35 99.93 True indel: indel (> 5bp) 95345830 95347534 283442 285146 NC_000014.9 scf35 99.88 True fake: scaffold gap size wrong estimation (local) 95347450 95349879 286079 288523 NC_000014.9 scf35 99.22 True fake: scaffold gap size wrong estimation (local) 95349833 95361765 289534 301905 NC_000014.9 scf35 97.39 True fake: scaffold gap size wrong estimation (local) 95361671 95370932 302531 312555 NC_000014.9 scf35 98.21 True fake: scaffold gap size wrong estimation (local) 95371292 95375052 313680 317441 NC_000014.9 scf35 99.84 True fake: not a misassembly (possible transposable element) 37285631 37292454 324297 317471 NC_000014.9 scf35 99.84 True fake: not a misassembly (possible transposable element) 95380205 95386571 324298 330664 NC_000014.9 scf35 99.86 True fake: scaffold gap size wrong estimation (local) 95386474 95389218 331389 334133 NC_000014.9 scf35 99.96 True relocation, inconsistency = 58108280 37270642 37278192 341685 334135 NC_000014.9 scf35 99.85 True fake: not a misassembly (possible transposable element) 95395305 95398086 341738 344519 NC_000014.9 scf35 99.96 True fake: not a misassembly (possible transposable element) 37267282 37269074 346312 344520 NC_000014.9 scf35 99.83 True fake: not a misassembly (possible transposable element) 95399043 95400282 346313 347552 NC_000014.9 scf35 100.0 True fake: not a misassembly (possible transposable element) 37264550 37266779 349785 347556 NC_000014.9 scf35 100.0 True fake: not a misassembly (possible transposable element) 95401664 95403707 349786 351829 NC_000014.9 scf35 99.95 True fake: not a misassembly (possible transposable element) 37257096 37263293 358027 351830 NC_000014.9 scf35 99.97 True relocation, inconsistency = 58145017 95408324 95419907 358041 369623 NC_000014.9 scf35 99.59 True fake: not a misassembly (possible transposable element) 37241887 37246263 374014 369644 NC_000014.9 scf35 99.84 True fake: not a misassembly (possible transposable element) 95422459 95423552 374015 375108 NC_000014.9 scf35 99.27 True relocation, inconsistency = 58180744 37240935 37241525 375888 375298 NC_000014.9 scf35 99.66 True local misassembly 37239293 37240768 377364 375889 NC_000014.9 scf35 100.0 True fake: not a misassembly (possible transposable element) 95425245 95426794 377528 379077 NC_000014.9 scf35 99.55 True fake: not a misassembly (possible transposable element) 37236585 37238998 381491 379078 NC_000014.9 scf35 99.92 True relocation, inconsistency = 58187911 95426910 95432713 381492 388141 NC_000014.9 scf35 99.51 True fake: scaffold gap size wrong estimation (local) 95432633 95434759 388967 391093 NC_000014.9 scf35 100.0 True fake: scaffold gap size wrong estimation (local) 95434673 95437731 391782 394841 NC_000014.9 scf35 99.87 True fake: scaffold gap size wrong estimation (local) 95437658 95447137 395545 405007 NC_000014.9 scf35 99.55 True fake: scaffold gap size wrong estimation (local) 95447437 95460010 406131 420291 NC_000014.9 scf35 99.38 True fake: scaffold gap size wrong estimation (local) 95460434 95466890 421473 428703 NC_000014.9 scf35 98.88 True fake: scaffold gap size wrong estimation (local) 95466817 95469260 429464 431906 NC_000014.9 scf35 99.75 True fake: scaffold gap size wrong estimation (local) 95469194 95473771 432609 437176 NC_000014.9 scf35 99.56 True fake: scaffold gap size wrong estimation (local) 95474047 95480804 438263 445920 NC_000014.9 scf35 99.45 True fake: scaffold gap size wrong estimation (local) 95480709 95488534 446576 454403 NC_000014.9 scf35 99.83 True fake: scaffold gap size wrong estimation (local) 95488698 95498280 455322 464901 NC_000014.9 scf35 99.78 True fake: scaffold gap size wrong estimation (local) 95498181 95499876 465556 467251 NC_000014.9 scf35 99.88 True fake: scaffold gap size wrong estimation (local) 95500099 95503637 468324 471862 NC_000014.9 scf35 100.0 True fake: scaffold gap size wrong estimation (local) 95503600 95513728 472559 483464 NC_000014.9 scf35 99.35 True fake: scaffold gap size wrong estimation (local) 95514170 95521644 484699 492931 NC_000014.9 scf35 98.41 True fake: scaffold gap size wrong estimation (local) 95521560 95526064 493610 498122 NC_000014.9 scf35 99.71 True fake: scaffold gap size wrong estimation (local) 95525972 95528139 498825 500992 NC_000014.9 scf35 99.45 True fake: scaffold gap size wrong estimation (local) 95528047 95554206 501739 528791 NC_000014.9 scf35 99.39 True fake: scaffold gap size wrong estimation (local) 95554108 95555583 529553 531027 NC_000014.9 scf35 99.8 True indel: indel (> 5bp) 95555881 95556638 531271 532028 NC_000014.9 scf35 100.0 True fake: scaffold gap size wrong estimation (local) 95556541 95558882 532800 535291 NC_000014.9 scf35 95.98 True fake: scaffold gap size wrong estimation (local) 95559097 95563327 536426 540523 NC_000014.9 scf35 96.25 True fake: scaffold gap size wrong estimation (local) 95563508 95564890 541462 542844 NC_000014.9 scf35 99.49 True fake: scaffold gap size wrong estimation (local) 95565386 95566053 543315 543982 NC_000014.9 scf35 99.7 True fake: scaffold gap size wrong estimation (local) 95565957 95567294 544796 546133 NC_000014.9 scf35 99.33 True fake: scaffold gap size wrong estimation (local) 95567076 95570398 546730 550093 NC_000014.9 scf35 98.42 True fake: scaffold gap size wrong estimation (local) 95570304 95571161 550930 551787 NC_000014.9 scf35 99.88 True local misassembly 95571394 95573201 551788 553595 NC_000014.9 scf35 99.67 True fake: scaffold gap size wrong estimation (local) 95573318 95578858 555000 561322 NC_000014.9 scf35 97.1 True fake: scaffold gap size wrong estimation (local) 95579531 95586007 562679 569179 NC_000014.9 scf35 99.46 True fake: scaffold gap size wrong estimation (local) 95585913 95591067 569889 575806 NC_000014.9 scf35 99.46 True fake: scaffold gap size wrong estimation (local) 95591196 95593785 576733 579322 NC_000014.9 scf35 99.85 True fake: scaffold gap size wrong estimation (local) 95593707 95597205 580083 583581 NC_000014.9 scf35 99.77 True fake: scaffold gap size wrong estimation (local) 95597133 95598622 584381 585887 NC_000014.9 scf35 98.61 True fake: scaffold gap size wrong estimation (local) 95598784 95602210 586901 590324 NC_000014.9 scf35 99.59 True fake: scaffold gap size wrong estimation (local) 95602644 95605899 591488 594767 NC_000014.9 scf35 98.78 True fake: scaffold gap size wrong estimation (local) 95606066 95608176 595609 597719 NC_000014.9 scf35 99.76 True fake: scaffold gap size wrong estimation (local) 95608355 95610428 598809 600882 NC_000014.9 scf35 99.76 True fake: scaffold gap size wrong estimation (local) 95611171 95613206 602490 604525 NC_000014.9 scf35 99.66 True fake: scaffold gap size wrong estimation (local) 95613107 95616478 606795 610193 NC_000014.9 scf35 98.65 True fake: scaffold gap size wrong estimation (local) 95616384 95638287 610970 634519 NC_000014.9 scf35 98.03 True fake: scaffold gap size wrong estimation (local) 95638567 95643074 635674 640181 NC_000014.9 scf35 99.87 True fake: scaffold gap size wrong estimation (local) 95643594 95644290 641533 642229 NC_000014.9 scf35 100.0 True local misassembly 95644469 95646331 642230 644092 NC_000014.9 scf35 99.95 True fake: scaffold gap size wrong estimation (local) 95646237 95650507 644818 649088 NC_000014.9 scf35 99.91 True fake: scaffold gap size wrong estimation (local) 95650711 95653544 650062 652895 NC_000014.9 scf35 99.82 True CONTIG scf35 652895 misassembled 81864828 81870822 1 6781 NC_000014.9 scf36 98.36 True fake: scaffold gap size wrong estimation (local) 81870741 81875646 7466 12371 NC_000014.9 scf36 99.96 True fake: scaffold gap size wrong estimation (local) 81875554 81883230 13084 20760 NC_000014.9 scf36 99.96 True fake: scaffold gap size wrong estimation (local) 81883135 81888655 21445 26961 NC_000014.9 scf36 99.93 True fake: scaffold gap size wrong estimation (local) 81888562 81891731 27670 30700 NC_000014.9 scf36 95.49 True fake: scaffold gap size wrong estimation (local) 81891635 81897956 31555 38543 NC_000014.9 scf36 97.56 True fake: scaffold gap size wrong estimation (local) 81897904 81900618 39287 42001 NC_000014.9 scf36 99.93 True fake: scaffold gap size wrong estimation (local) 81900533 81909250 42690 51399 NC_000014.9 scf36 99.91 True fake: scaffold gap size wrong estimation (local) 81909153 81910370 52047 53261 NC_000014.9 scf36 99.75 True fake: scaffold gap size wrong estimation (local) 81910281 81913122 54138 56982 NC_000014.9 scf36 99.79 True fake: scaffold gap size wrong estimation (local) 81913027 81923088 57662 67723 NC_000014.9 scf36 99.99 True fake: scaffold gap size wrong estimation (local) 81923926 81931832 69311 77213 NC_000014.9 scf36 99.94 True fake: scaffold gap size wrong estimation (local) 81931733 81944941 77914 91121 NC_000014.9 scf36 99.99 True fake: scaffold gap size wrong estimation (local) 81946060 81961936 93007 109646 NC_000014.9 scf36 99.69 True fake: scaffold gap size wrong estimation (local) 81961837 82014298 110280 164304 NC_000014.9 scf36 99.79 True fake: scaffold gap size wrong estimation (local) 82014204 82019738 164931 171255 NC_000014.9 scf36 99.95 True fake: scaffold gap size wrong estimation (local) 82019945 82032754 172329 186951 NC_000014.9 scf36 98.89 True local misassembly 82037058 82038061 186952 187955 NC_000014.9 scf36 99.6 True fake: scaffold gap size wrong estimation (local) 82038222 82044955 189044 196545 NC_000014.9 scf36 98.61 True fake: scaffold gap size wrong estimation (local) 82044889 82051826 197203 204141 NC_000014.9 scf36 99.93 True fake: scaffold gap size wrong estimation (local) 82051792 82060173 204863 214031 NC_000014.9 scf36 98.93 True fake: scaffold gap size wrong estimation (local) 82060083 82061001 214834 215752 NC_000014.9 scf36 100.0 True fake: scaffold gap size wrong estimation (local) 82061566 82062108 216208 216750 NC_000014.9 scf36 100.0 True fake: scaffold gap size wrong estimation (local) 82064947 82067605 222249 224944 NC_000014.9 scf36 98.41 True fake: scaffold gap size wrong estimation (local) 82067511 82071301 225742 230467 NC_000014.9 scf36 98.41 True fake: scaffold gap size wrong estimation (local) 82071217 82078817 231181 238790 NC_000014.9 scf36 99.78 True fake: scaffold gap size wrong estimation (local) 82078746 82088817 239456 250320 NC_000014.9 scf36 99.51 True fake: scaffold gap size wrong estimation (local) 82088722 82105763 251004 268041 NC_000014.9 scf36 99.82 True fake: scaffold gap size wrong estimation (local) 82105709 82147543 268745 312871 NC_000014.9 scf36 99.88 True fake: scaffold gap size wrong estimation (local) 82148020 82185733 314178 352641 NC_000014.9 scf36 99.71 True fake: scaffold gap size wrong estimation (local) 82185637 82188605 353280 356248 NC_000014.9 scf36 99.97 True fake: scaffold gap size wrong estimation (local) 82188507 82189480 357143 358116 NC_000014.9 scf36 100.0 True fake: scaffold gap size wrong estimation (local) 82189383 82205898 358987 376237 NC_000014.9 scf36 98.65 True fake: scaffold gap size wrong estimation (local) 82206062 82206862 376362 377173 NC_000014.9 scf36 98.52 True fake: scaffold gap size wrong estimation (local) 82206799 82214962 377866 386019 NC_000014.9 scf36 99.84 True fake: scaffold gap size wrong estimation (local) 82215167 82235159 386999 406992 NC_000014.9 scf36 99.94 True fake: scaffold gap size wrong estimation (local) 82235091 82237250 407722 409860 NC_000014.9 scf36 98.94 True fake: scaffold gap size wrong estimation (local) 82237159 82285979 410578 463316 NC_000014.9 scf36 99.56 True fake: scaffold gap size wrong estimation (local) 82286166 82303715 465507 485457 NC_000014.9 scf36 99.18 True fake: scaffold gap size wrong estimation (local) 82303877 82311252 486337 494402 NC_000014.9 scf36 97.19 True fake: scaffold gap size wrong estimation (local) 82311163 82317544 495668 502049 NC_000014.9 scf36 100.0 True fake: scaffold gap size wrong estimation (local) 82317986 82319130 503397 504541 NC_000014.9 scf36 100.0 True local misassembly 82319394 82320631 504542 505779 NC_000014.9 scf36 100.0 True fake: scaffold gap size wrong estimation (local) 82320550 82347710 506643 535372 NC_000014.9 scf36 99.81 True CONTIG scf36 535372 correct 47943267 47946860 1 3588 NC_000014.9 scf37 99.47 True fake: scaffold gap size wrong estimation (local) 47946971 47951336 4425 8790 NC_000014.9 scf37 99.84 True fake: scaffold gap size wrong estimation (local) 47951240 47953949 9544 12256 NC_000014.9 scf37 99.45 True fake: scaffold gap size wrong estimation (local) 47953890 47969508 12976 29344 NC_000014.9 scf37 99.07 True fake: scaffold gap size wrong estimation (local) 47969410 47999734 30038 62672 NC_000014.9 scf37 99.38 True fake: scaffold gap size wrong estimation (local) 47999651 48016666 63294 80308 NC_000014.9 scf37 99.9 True fake: scaffold gap size wrong estimation (local) 48018770 48019469 82985 83684 NC_000014.9 scf37 99.86 True fake: scaffold gap size wrong estimation (local) 48019494 48031597 86009 99751 NC_000014.9 scf37 99.82 True fake: scaffold gap size wrong estimation (local) 48031525 48034406 100386 103267 NC_000014.9 scf37 99.97 True fake: scaffold gap size wrong estimation (local) 48034310 48052397 104020 123984 NC_000014.9 scf37 99.14 True fake: scaffold gap size wrong estimation (local) 48052305 48055434 124853 127982 NC_000014.9 scf37 99.84 True fake: scaffold gap size wrong estimation (local) 48055337 48062191 128705 135400 NC_000014.9 scf37 97.59 True fake: scaffold gap size wrong estimation (local) 48062095 48070126 135996 144027 NC_000014.9 scf37 99.91 True fake: scaffold gap size wrong estimation (local) 48070714 48081274 145332 155892 NC_000014.9 scf37 99.82 True fake: scaffold gap size wrong estimation (local) 48081184 48098672 156895 175173 NC_000014.9 scf37 99.42 True fake: scaffold gap size wrong estimation (local) 48098817 48099843 176072 177098 NC_000014.9 scf37 100.0 True indel: indel (> 5bp) 48099844 48100653 177127 177936 NC_000014.9 scf37 99.88 True local misassembly 48100797 48101833 177937 178973 NC_000014.9 scf37 99.71 True fake: scaffold gap size wrong estimation (local) 48101834 48102478 179208 179852 NC_000014.9 scf37 99.69 True fake: scaffold gap size wrong estimation (local) 48102754 48118879 181087 197990 NC_000014.9 scf37 99.49 True fake: scaffold gap size wrong estimation (local) 48118782 48131875 198710 211822 NC_000014.9 scf37 99.79 True fake: scaffold gap size wrong estimation (local) 48131795 48134913 212435 215552 NC_000014.9 scf37 99.87 True fake: scaffold gap size wrong estimation (local) 48134818 48167982 216282 250223 NC_000014.9 scf37 99.91 True fake: scaffold gap size wrong estimation (local) 48167893 48171310 250827 254246 NC_000014.9 scf37 99.88 True fake: scaffold gap size wrong estimation (local) 48171225 48174130 254926 257712 NC_000014.9 scf37 95.07 True fake: scaffold gap size wrong estimation (local) 48174045 48176030 258566 260551 NC_000014.9 scf37 100.0 True fake: scaffold gap size wrong estimation (local) 48175943 48178435 261307 263799 NC_000014.9 scf37 99.96 True fake: scaffold gap size wrong estimation (local) 48178339 48187183 265535 274415 NC_000014.9 scf37 99.56 True CONTIG scf37 274415 correct 21899611 21902828 1 3218 NC_000014.9 scf38 99.56 True fake: scaffold gap size wrong estimation (local) 21904379 21910466 5443 11531 NC_000014.9 scf38 99.69 True fake: scaffold gap size wrong estimation (local) 21910963 21927348 12727 29918 NC_000014.9 scf38 99.71 True fake: scaffold gap size wrong estimation (local) 21927627 21940968 31162 45306 NC_000014.9 scf38 99.61 True fake: scaffold gap size wrong estimation (local) 21940877 21945269 46002 50414 NC_000014.9 scf38 99.48 True fake: scaffold gap size wrong estimation (local) 21945204 21952187 51052 58049 NC_000014.9 scf38 99.73 True fake: scaffold gap size wrong estimation (local) 21952124 21957110 58702 63689 NC_000014.9 scf38 99.82 True fake: scaffold gap size wrong estimation (local) 21957023 21969882 64392 77271 NC_000014.9 scf38 99.72 True fake: scaffold gap size wrong estimation (local) 21970113 21971195 78394 79476 NC_000014.9 scf38 99.91 True local misassembly 21971443 21972911 79477 80945 NC_000014.9 scf38 99.93 True fake: scaffold gap size wrong estimation (local) 21972821 21979078 81761 88816 NC_000014.9 scf38 99.82 True fake: scaffold gap size wrong estimation (local) 21978981 21984755 89497 95966 NC_000014.9 scf38 98.17 True fake: scaffold gap size wrong estimation (local) 21984656 21987408 96659 99411 NC_000014.9 scf38 99.56 True fake: scaffold gap size wrong estimation (local) 21987351 22005449 100178 120591 NC_000014.9 scf38 99.67 True fake: scaffold gap size wrong estimation (local) 22006654 22030341 122566 146856 NC_000014.9 scf38 99.14 True fake: scaffold gap size wrong estimation (local) 22030244 22032763 147558 150077 NC_000014.9 scf38 100.0 True fake: scaffold gap size wrong estimation (local) 22033410 22034641 151468 152699 NC_000014.9 scf38 100.0 True fake: scaffold gap size wrong estimation (local) 22034569 22050164 153367 170460 NC_000014.9 scf38 99.87 True fake: scaffold gap size wrong estimation (local) 22050562 22052300 171617 173355 NC_000014.9 scf38 99.54 True fake: scaffold gap size wrong estimation (local) 22052662 22054170 174620 176128 NC_000014.9 scf38 99.73 True fake: scaffold gap size wrong estimation (local) 22054331 22058499 180653 184850 NC_000014.9 scf38 99.02 True fake: scaffold gap size wrong estimation (local) 22058400 22063413 185681 190721 NC_000014.9 scf38 99.17 True fake: scaffold gap size wrong estimation (local) 22063613 22067405 191702 195497 NC_000014.9 scf38 99.82 True fake: scaffold gap size wrong estimation (local) 22067317 22072302 196159 201143 NC_000014.9 scf38 99.9 True fake: scaffold gap size wrong estimation (local) 22072210 22088096 201790 218976 NC_000014.9 scf38 99.07 True fake: scaffold gap size wrong estimation (local) 22088263 22091296 219920 222952 NC_000014.9 scf38 99.93 True fake: scaffold gap size wrong estimation (local) 22091533 22100798 223921 233186 NC_000014.9 scf38 99.88 True fake: scaffold gap size wrong estimation (local) 22100721 22110529 233901 243710 NC_000014.9 scf38 99.91 True fake: scaffold gap size wrong estimation (local) 22110883 22117962 244693 251713 NC_000014.9 scf38 99.08 True fake: scaffold gap size wrong estimation (local) 22117870 22119994 252486 254622 NC_000014.9 scf38 99.06 True fake: scaffold gap size wrong estimation (local) 22119937 22121893 255501 257459 NC_000014.9 scf38 99.64 True fake: scaffold gap size wrong estimation (local) 22122004 22129699 258411 266104 NC_000014.9 scf38 99.79 True fake: scaffold gap size wrong estimation (local) 22129613 22142330 266761 279474 NC_000014.9 scf38 99.79 True fake: scaffold gap size wrong estimation (local) 22142235 22145729 280090 283576 NC_000014.9 scf38 99.06 True fake: scaffold gap size wrong estimation (local) 22145526 22147550 285239 287287 NC_000014.9 scf38 98.29 True fake: scaffold gap size wrong estimation (local) 22147452 22150068 288054 290670 NC_000014.9 scf38 99.81 True fake: scaffold gap size wrong estimation (local) 22149977 22157727 291387 299942 NC_000014.9 scf38 99.38 True fake: scaffold gap size wrong estimation (local) 22157630 22161665 300585 305374 NC_000014.9 scf38 99.29 True fake: scaffold gap size wrong estimation (local) 22162117 22166798 305661 310342 NC_000014.9 scf38 99.87 True fake: scaffold gap size wrong estimation (local) 22166709 22214488 310989 360264 NC_000014.9 scf38 99.86 True fake: scaffold gap size wrong estimation (local) 22214772 22222394 361255 368865 NC_000014.9 scf38 99.82 True fake: scaffold gap size wrong estimation (local) 22222300 22224302 369591 371593 NC_000014.9 scf38 100.0 True local misassembly 22224621 22225459 371594 372432 NC_000014.9 scf38 99.88 True fake: scaffold gap size wrong estimation (local) 22225416 22237054 374523 386165 NC_000014.9 scf38 99.75 True fake: scaffold gap size wrong estimation (local) 22236955 22238303 386820 388168 NC_000014.9 scf38 99.85 True fake: scaffold gap size wrong estimation (local) 22238207 22242410 388951 393178 NC_000014.9 scf38 99.36 True fake: scaffold gap size wrong estimation (local) 22242315 22243978 393913 395612 NC_000014.9 scf38 97.65 True fake: scaffold gap size wrong estimation (local) 22244070 22244637 396509 397076 NC_000014.9 scf38 100.0 True indel: indel (> 5bp) 22244663 22245930 397077 398344 NC_000014.9 scf38 99.92 True local misassembly 22246188 22246790 398345 398947 NC_000014.9 scf38 100.0 True fake: scaffold gap size wrong estimation (local) 22246882 22252314 400170 405602 NC_000014.9 scf38 99.85 True fake: scaffold gap size wrong estimation (local) 22252554 22256442 406615 410515 NC_000014.9 scf38 99.62 True fake: scaffold gap size wrong estimation (local) 22260677 22268488 412847 420709 NC_000014.9 scf38 99.22 True fake: scaffold gap size wrong estimation (local) 22268653 22269927 421634 422908 NC_000014.9 scf38 99.61 True fake: scaffold gap size wrong estimation (local) 22269833 22292164 423633 447804 NC_000014.9 scf38 99.52 True fake: scaffold gap size wrong estimation (local) 22292086 22295917 448706 452543 NC_000014.9 scf38 99.66 True fake: scaffold gap size wrong estimation (local) 22296120 22310770 453498 468676 NC_000014.9 scf38 96.33 True fake: scaffold gap size wrong estimation (local) 22310877 22325432 469494 484764 NC_000014.9 scf38 99.69 True fake: scaffold gap size wrong estimation (local) 22325564 22327375 485690 487501 NC_000014.9 scf38 99.94 True fake: scaffold gap size wrong estimation (local) 22327314 22349341 488251 511046 NC_000014.9 scf38 99.64 True CONTIG scf38 511046 correct 82353483 82359797 1 6315 NC_000014.9 scf39 100.0 True fake: scaffold gap size wrong estimation (local) 82359720 82364827 7111 13015 NC_000014.9 scf39 99.94 True fake: scaffold gap size wrong estimation (local) 82364754 82377670 13676 27406 NC_000014.9 scf39 99.25 True fake: scaffold gap size wrong estimation (local) 82378035 82390135 29046 41188 NC_000014.9 scf39 99.35 True fake: scaffold gap size wrong estimation (local) 82390960 82391780 42840 43660 NC_000014.9 scf39 99.76 True indel: indel (> 5bp) 82392127 82392927 44000 44800 NC_000014.9 scf39 100.0 True fake: scaffold gap size wrong estimation (local) 82392872 82395660 45537 48309 NC_000014.9 scf39 99.39 True fake: scaffold gap size wrong estimation (local) 82395562 82408169 48934 62299 NC_000014.9 scf39 99.65 True fake: scaffold gap size wrong estimation (local) 82408096 82409595 63117 64616 NC_000014.9 scf39 99.93 True fake: scaffold gap size wrong estimation (local) 82409516 82453274 65344 111346 NC_000014.9 scf39 99.65 True fake: scaffold gap size wrong estimation (local) 82453190 82455124 112081 114015 NC_000014.9 scf39 100.0 True fake: scaffold gap size wrong estimation (local) 82455025 82470523 114800 131881 NC_000014.9 scf39 99.68 True fake: scaffold gap size wrong estimation (local) 82470432 82472851 132625 135044 NC_000014.9 scf39 100.0 True fake: scaffold gap size wrong estimation (local) 82474499 82475351 137382 138234 NC_000014.9 scf39 100.0 True fake: scaffold gap size wrong estimation (local) 82475447 82482849 139252 146654 NC_000014.9 scf39 99.95 True fake: scaffold gap size wrong estimation (local) 82483649 82519764 148177 185826 NC_000014.9 scf39 99.56 True fake: scaffold gap size wrong estimation (local) 82519673 82523145 186465 189937 NC_000014.9 scf39 99.97 True fake: scaffold gap size wrong estimation (local) 82523066 82533822 190584 201336 NC_000014.9 scf39 99.94 True fake: scaffold gap size wrong estimation (local) 82533727 82539092 202001 207399 NC_000014.9 scf39 99.39 True fake: scaffold gap size wrong estimation (local) 82539225 82553272 208305 223104 NC_000014.9 scf39 99.54 True fake: scaffold gap size wrong estimation (local) 82553614 82557323 223907 227615 NC_000014.9 scf39 99.84 True fake: scaffold gap size wrong estimation (local) 82557230 82606711 228342 280716 NC_000014.9 scf39 99.18 True fake: scaffold gap size wrong estimation (local) 82607259 82618244 282009 292987 NC_000014.9 scf39 99.91 True fake: scaffold gap size wrong estimation (local) 82618190 82621869 293687 297367 NC_000014.9 scf39 99.97 True fake: scaffold gap size wrong estimation (local) 82621808 82634425 298115 310739 NC_000014.9 scf39 99.94 True fake: scaffold gap size wrong estimation (local) 82634342 82645672 311434 322786 NC_000014.9 scf39 99.74 True fake: scaffold gap size wrong estimation (local) 82645575 82648258 323453 326132 NC_000014.9 scf39 99.85 True fake: scaffold gap size wrong estimation (local) 82648160 82651703 326778 330321 NC_000014.9 scf39 99.94 True fake: scaffold gap size wrong estimation (local) 82652045 82674927 331360 355049 NC_000014.9 scf39 99.91 True CONTIG scf39 355049 correct 56019923 56024771 1 4849 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56024969 56034532 5810 16191 NC_000014.9 scf40 99.98 True fake: scaffold gap size wrong estimation (local) 56034466 56036945 16896 19375 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56036865 56047576 20167 31667 NC_000014.9 scf40 99.85 True fake: scaffold gap size wrong estimation (local) 56047771 56054760 32537 39526 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56054684 56061512 40207 47035 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56061653 56064492 47932 50771 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56064878 56071500 51935 58557 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56071401 56080753 59219 68573 NC_000014.9 scf40 99.98 True fake: scaffold gap size wrong estimation (local) 56080674 56110228 69277 101902 NC_000014.9 scf40 99.65 True fake: scaffold gap size wrong estimation (local) 56110133 56140211 102851 133882 NC_000014.9 scf40 99.83 True fake: scaffold gap size wrong estimation (local) 56140113 56142758 134520 137165 NC_000014.9 scf40 100.0 True fake: scaffold gap size wrong estimation (local) 56142685 56163834 137852 160555 NC_000014.9 scf40 99.34 True fake: scaffold gap size wrong estimation (local) 56163757 56181423 161233 178899 NC_000014.9 scf40 99.92 True fake: scaffold gap size wrong estimation (local) 56181346 56189029 179590 187273 NC_000014.9 scf40 99.97 True fake: scaffold gap size wrong estimation (local) 56188933 56201793 187910 201533 NC_000014.9 scf40 99.87 True fake: scaffold gap size wrong estimation (local) 56201700 56208522 203038 209965 NC_000014.9 scf40 98.21 True fake: scaffold gap size wrong estimation (local) 56208428 56213490 210627 215689 NC_000014.9 scf40 99.84 True fake: scaffold gap size wrong estimation (local) 56213391 56217482 216440 220531 NC_000014.9 scf40 99.9 True fake: scaffold gap size wrong estimation (local) 56217307 56219530 221378 223633 NC_000014.9 scf40 98.14 True fake: scaffold gap size wrong estimation (local) 56219441 56227969 224397 232925 NC_000014.9 scf40 99.79 True fake: scaffold gap size wrong estimation (local) 56227937 56229207 233992 235262 NC_000014.9 scf40 99.61 True local misassembly 56229607 56230280 235263 235936 NC_000014.9 scf40 99.55 True fake: scaffold gap size wrong estimation (local) 56230795 56231417 237766 238402 NC_000014.9 scf40 97.8 True CONTIG scf40 238402 correct 32583706 32587320 1 3619 NC_000014.9 scf41 99.89 True fake: scaffold gap size wrong estimation (local) 32587242 32607406 4311 25209 NC_000014.9 scf41 99.83 True fake: scaffold gap size wrong estimation (local) 32607308 32609914 25907 28513 NC_000014.9 scf41 100.0 True fake: scaffold gap size wrong estimation (local) 32609865 32615006 29276 34417 NC_000014.9 scf41 99.9 True fake: scaffold gap size wrong estimation (local) 32615799 32617833 35964 37998 NC_000014.9 scf41 99.95 True fake: scaffold gap size wrong estimation (local) 32617743 32624638 38727 45622 NC_000014.9 scf41 99.99 True fake: scaffold gap size wrong estimation (local) 32624539 32630628 46226 52312 NC_000014.9 scf41 99.92 True fake: scaffold gap size wrong estimation (local) 32630547 32636619 52906 58978 NC_000014.9 scf41 99.93 True fake: scaffold gap size wrong estimation (local) 32636522 32650576 59626 74437 NC_000014.9 scf41 99.94 True fake: scaffold gap size wrong estimation (local) 32650481 32653638 75099 78256 NC_000014.9 scf41 99.97 True fake: scaffold gap size wrong estimation (local) 32653546 32668063 78948 94202 NC_000014.9 scf41 99.67 True fake: scaffold gap size wrong estimation (local) 32667977 32687494 94812 116597 NC_000014.9 scf41 99.6 True fake: scaffold gap size wrong estimation (local) 32687415 32691790 117322 122620 NC_000014.9 scf41 99.14 True fake: scaffold gap size wrong estimation (local) 32691699 32695938 123384 128510 NC_000014.9 scf41 99.74 True fake: scaffold gap size wrong estimation (local) 32695847 32728252 129210 162353 NC_000014.9 scf41 99.7 True fake: scaffold gap size wrong estimation (local) 32728159 32736896 163053 171786 NC_000014.9 scf41 99.91 True fake: scaffold gap size wrong estimation (local) 32736801 32740291 172439 175929 NC_000014.9 scf41 100.0 True fake: scaffold gap size wrong estimation (local) 32740192 32758655 176615 196595 NC_000014.9 scf41 99.63 True fake: scaffold gap size wrong estimation (local) 32758559 32760669 197305 199415 NC_000014.9 scf41 99.76 True fake: scaffold gap size wrong estimation (local) 32760570 32765809 200105 205364 NC_000014.9 scf41 99.54 True fake: scaffold gap size wrong estimation (local) 32765711 32768267 205976 208532 NC_000014.9 scf41 99.92 True fake: scaffold gap size wrong estimation (local) 32768169 32769064 209740 210635 NC_000014.9 scf41 99.78 True fake: scaffold gap size wrong estimation (local) 32769471 32775959 212039 218522 NC_000014.9 scf41 99.91 True fake: scaffold gap size wrong estimation (local) 32775866 32779450 219251 222839 NC_000014.9 scf41 99.67 True fake: scaffold gap size wrong estimation (local) 32779416 32786325 223526 230436 NC_000014.9 scf41 99.86 True fake: scaffold gap size wrong estimation (local) 32786499 32788134 231399 233032 NC_000014.9 scf41 99.82 True fake: scaffold gap size wrong estimation (local) 32788043 32790696 233801 236452 NC_000014.9 scf41 99.7 True fake: scaffold gap size wrong estimation (local) 32790924 32792313 237517 238884 NC_000014.9 scf41 95.39 True fake: scaffold gap size wrong estimation (local) 32792219 32798620 240229 246666 NC_000014.9 scf41 99.08 True fake: scaffold gap size wrong estimation (local) 32798524 32804568 247427 254261 NC_000014.9 scf41 99.48 True fake: scaffold gap size wrong estimation (local) 32804773 32807084 255300 257611 NC_000014.9 scf41 99.7 True fake: scaffold gap size wrong estimation (local) 32807005 32817585 258364 269728 NC_000014.9 scf41 98.87 True fake: scaffold gap size wrong estimation (local) 32817492 32834237 270393 287129 NC_000014.9 scf41 99.88 True fake: scaffold gap size wrong estimation (local) 32834526 32837980 288151 291601 NC_000014.9 scf41 99.36 True fake: scaffold gap size wrong estimation (local) 32838215 32841871 292595 296898 NC_000014.9 scf41 99.53 True fake: scaffold gap size wrong estimation (local) 32842101 32846217 298087 302191 NC_000014.9 scf41 99.51 True fake: scaffold gap size wrong estimation (local) 32846139 32849216 302883 305960 NC_000014.9 scf41 99.9 True fake: scaffold gap size wrong estimation (local) 32849262 32850042 307320 308100 NC_000014.9 scf41 99.74 True local misassembly 32850536 32851188 308101 308753 NC_000014.9 scf41 99.69 True CONTIG scf41 311870 correct 87238029 87238662 1 634 NC_000014.9 scf42 99.84 True indel: indel (> 5bp) 87238691 87239341 635 1285 NC_000014.9 scf42 97.85 True fake: scaffold gap size wrong estimation (local) 87240704 87245944 3319 9370 NC_000014.9 scf42 99.83 True fake: scaffold gap size wrong estimation (local) 87245852 87250144 10038 14332 NC_000014.9 scf42 99.51 True fake: scaffold gap size wrong estimation (local) 87250842 87258661 15788 23609 NC_000014.9 scf42 99.83 True fake: scaffold gap size wrong estimation (local) 87258570 87261837 24271 27538 NC_000014.9 scf42 99.85 True fake: scaffold gap size wrong estimation (local) 87261740 87270605 28248 37113 NC_000014.9 scf42 99.77 True fake: scaffold gap size wrong estimation (local) 87270506 87271520 37888 38902 NC_000014.9 scf42 99.61 True fake: scaffold gap size wrong estimation (local) 87272306 87275113 40455 43265 NC_000014.9 scf42 99.36 True fake: scaffold gap size wrong estimation (local) 87275513 87278062 44393 46942 NC_000014.9 scf42 99.25 True fake: scaffold gap size wrong estimation (local) 87277996 87279289 47905 49197 NC_000014.9 scf42 99.54 True fake: scaffold gap size wrong estimation (local) 87279190 87283349 50020 54179 NC_000014.9 scf42 99.95 True fake: scaffold gap size wrong estimation (local) 87283512 87292983 55093 65445 NC_000014.9 scf42 99.01 True fake: scaffold gap size wrong estimation (local) 87292888 87303287 66141 77321 NC_000014.9 scf42 99.91 True fake: scaffold gap size wrong estimation (local) 87303188 87314977 77938 89739 NC_000014.9 scf42 99.65 True fake: scaffold gap size wrong estimation (local) 87316451 87347770 91859 123990 NC_000014.9 scf42 99.64 True fake: scaffold gap size wrong estimation (local) 87347686 87354867 124651 132707 NC_000014.9 scf42 99.42 True CONTIG scf42 132707 correct 26112183 26140980 17 28816 NC_000014.9 scf43 99.85 True fake: scaffold gap size wrong estimation (local) 26140889 26143462 29492 32065 NC_000014.9 scf43 99.96 True fake: scaffold gap size wrong estimation (local) 26143655 26149894 33021 39257 NC_000014.9 scf43 99.95 True fake: scaffold gap size wrong estimation (local) 26149797 26151724 39934 41860 NC_000014.9 scf43 99.95 True fake: scaffold gap size wrong estimation (local) 26151632 26161376 42569 52999 NC_000014.9 scf43 98.37 True fake: scaffold gap size wrong estimation (local) 26161560 26182260 53917 76105 NC_000014.9 scf43 99.69 True fake: scaffold gap size wrong estimation (local) 26182164 26184183 76762 78781 NC_000014.9 scf43 99.95 True fake: scaffold gap size wrong estimation (local) 26184108 26186378 79631 81900 NC_000014.9 scf43 99.82 True fake: scaffold gap size wrong estimation (local) 26186345 26196935 82644 93234 NC_000014.9 scf43 99.97 True fake: scaffold gap size wrong estimation (local) 26196872 26203101 93994 100220 NC_000014.9 scf43 99.9 True fake: scaffold gap size wrong estimation (local) 26203355 26203973 101447 102065 NC_000014.9 scf43 99.52 True fake: scaffold gap size wrong estimation (local) 26203878 26215778 103194 115038 NC_000014.9 scf43 99.46 True fake: scaffold gap size wrong estimation (local) 26216438 26228022 116481 128795 NC_000014.9 scf43 99.24 True fake: scaffold gap size wrong estimation (local) 26227954 26232401 129449 133896 NC_000014.9 scf43 99.96 True fake: scaffold gap size wrong estimation (local) 26232770 26237379 134723 139332 NC_000014.9 scf43 99.87 True fake: scaffold gap size wrong estimation (local) 26237285 26240948 140015 143586 NC_000014.9 scf43 97.38 True fake: scaffold gap size wrong estimation (local) 26240851 26244793 144349 149168 NC_000014.9 scf43 99.61 True fake: scaffold gap size wrong estimation (local) 26244708 26253033 150818 159890 NC_000014.9 scf43 98.33 True fake: scaffold gap size wrong estimation (local) 26253127 26268536 160730 177730 NC_000014.9 scf43 99.68 True fake: scaffold gap size wrong estimation (local) 26268636 26277526 178563 187453 NC_000014.9 scf43 99.93 True fake: scaffold gap size wrong estimation (local) 26277460 26292514 188118 203175 NC_000014.9 scf43 99.83 True fake: scaffold gap size wrong estimation (local) 26292417 26295002 203924 206509 NC_000014.9 scf43 99.73 True fake: scaffold gap size wrong estimation (local) 26294920 26295828 207466 208375 NC_000014.9 scf43 99.67 True CONTIG scf43 208375 correct 40947643 40949016 1374 1 NC_000014.9 scf44 99.93 True fake: scaffold gap size wrong estimation (local) 40929344 40947440 21302 2447 NC_000014.9 scf44 99.72 True fake: scaffold gap size wrong estimation (local) 40923429 40927401 27735 23749 NC_000014.9 scf44 99.57 True fake: scaffold gap size wrong estimation (local) 40921495 40922212 30416 29699 NC_000014.9 scf44 99.86 True fake: scaffold gap size wrong estimation (local) 40913977 40921524 39443 31897 NC_000014.9 scf44 99.88 True fake: scaffold gap size wrong estimation (local) 40912181 40914067 42033 40143 NC_000014.9 scf44 99.68 True fake: scaffold gap size wrong estimation (local) 40904498 40912355 51804 42932 NC_000014.9 scf44 97.16 True fake: scaffold gap size wrong estimation (local) 40898011 40904593 59088 52506 NC_000014.9 scf44 99.85 True fake: scaffold gap size wrong estimation (local) 40894794 40897894 64648 59935 NC_000014.9 scf44 98.45 True fake: scaffold gap size wrong estimation (local) 40891380 40894017 69105 66468 NC_000014.9 scf44 99.81 True fake: scaffold gap size wrong estimation (local) 40881397 40891479 80690 69802 NC_000014.9 scf44 99.27 True fake: scaffold gap size wrong estimation (local) 40871416 40881494 91484 81393 NC_000014.9 scf44 99.77 True fake: scaffold gap size wrong estimation (local) 40848239 40871515 116189 92162 NC_000014.9 scf44 99.44 True fake: scaffold gap size wrong estimation (local) 40846782 40848016 118401 117167 NC_000014.9 scf44 99.68 True fake: scaffold gap size wrong estimation (local) 40846168 40846781 119237 118624 NC_000014.9 scf44 100.0 True fake: scaffold gap size wrong estimation (local) 40840108 40846007 126814 120127 NC_000014.9 scf44 99.81 True fake: scaffold gap size wrong estimation (local) 40836127 40839896 131596 127827 NC_000014.9 scf44 99.87 True fake: scaffold gap size wrong estimation (local) 40828460 40835602 141038 132937 NC_000014.9 scf44 99.64 True fake: scaffold gap size wrong estimation (local) 40825948 40828553 144266 141661 NC_000014.9 scf44 99.77 True fake: scaffold gap size wrong estimation (local) 40807652 40825698 165888 145421 NC_000014.9 scf44 98.38 True fake: scaffold gap size wrong estimation (local) 40796948 40807305 177381 167021 NC_000014.9 scf44 99.81 True fake: scaffold gap size wrong estimation (local) 40789908 40797045 186057 178115 NC_000014.9 scf44 99.5 True fake: scaffold gap size wrong estimation (local) 40781476 40790005 195263 186747 NC_000014.9 scf44 99.78 True fake: scaffold gap size wrong estimation (local) 40779438 40781573 198110 195975 NC_000014.9 scf44 99.95 True fake: scaffold gap size wrong estimation (local) 40772377 40779527 206762 198833 NC_000014.9 scf44 99.78 True fake: scaffold gap size wrong estimation (local) 40769385 40772467 210504 207416 NC_000014.9 scf44 99.77 True fake: scaffold gap size wrong estimation (local) 40761422 40769466 219240 211196 NC_000014.9 scf44 99.96 True fake: scaffold gap size wrong estimation (local) 40754168 40761500 227204 219872 NC_000014.9 scf44 99.9 True fake: scaffold gap size wrong estimation (local) 40751731 40754263 230390 227858 NC_000014.9 scf44 99.96 True fake: scaffold gap size wrong estimation (local) 40746388 40751825 236551 231116 NC_000014.9 scf44 99.83 True fake: scaffold gap size wrong estimation (local) 40734663 40746486 249015 237192 NC_000014.9 scf44 99.87 True fake: scaffold gap size wrong estimation (local) 40732784 40734762 251721 249743 NC_000014.9 scf44 99.85 True fake: scaffold gap size wrong estimation (local) 40730408 40732877 254985 252512 NC_000014.9 scf44 99.56 True fake: scaffold gap size wrong estimation (local) 40727692 40728725 258394 257358 NC_000014.9 scf44 99.61 True fake: scaffold gap size wrong estimation (local) 40722584 40727788 264254 259050 NC_000014.9 scf44 99.9 True fake: scaffold gap size wrong estimation (local) 40720572 40722665 267161 264918 NC_000014.9 scf44 97.03 True fake: scaffold gap size wrong estimation (local) 40712009 40718913 276489 269585 NC_000014.9 scf44 99.9 True fake: scaffold gap size wrong estimation (local) 40694464 40712083 297097 278520 NC_000014.9 scf44 99.88 True fake: scaffold gap size wrong estimation (local) 40692638 40694537 299724 297825 NC_000014.9 scf44 99.84 True local misassembly 40690723 40692380 301382 299725 NC_000014.9 scf44 100.0 True fake: scaffold gap size wrong estimation (local) 40661719 40690817 331902 302088 NC_000014.9 scf44 99.72 True fake: scaffold gap size wrong estimation (local) 40641565 40661804 352796 332561 NC_000014.9 scf44 99.92 True fake: scaffold gap size wrong estimation (local) 40640421 40641379 354801 353827 NC_000014.9 scf44 98.26 True fake: scaffold gap size wrong estimation (local) 40635012 40639955 360010 355071 NC_000014.9 scf44 99.76 True fake: scaffold gap size wrong estimation (local) 40632747 40635107 363096 360736 NC_000014.9 scf44 99.83 True fake: scaffold gap size wrong estimation (local) 40631386 40632645 365281 364022 NC_000014.9 scf44 100.0 True local misassembly 40630119 40631210 366373 365282 NC_000014.9 scf44 99.82 True fake: scaffold gap size wrong estimation (local) 40625914 40629770 372355 367614 NC_000014.9 scf44 99.69 True fake: scaffold gap size wrong estimation (local) 40613724 40626005 387015 373223 NC_000014.9 scf44 99.45 True fake: scaffold gap size wrong estimation (local) 40610444 40613816 391088 387722 NC_000014.9 scf44 99.61 True fake: scaffold gap size wrong estimation (local) 40608510 40609910 393791 392377 NC_000014.9 scf44 98.8 True fake: scaffold gap size wrong estimation (local) 40607344 40607986 395984 395342 NC_000014.9 scf44 100.0 True fake: scaffold gap size wrong estimation (local) 40605584 40606477 397891 396965 NC_000014.9 scf44 96.44 True fake: scaffold gap size wrong estimation (local) 40596284 40605464 407921 398723 NC_000014.9 scf44 99.62 True fake: scaffold gap size wrong estimation (local) 40592905 40596107 412108 408906 NC_000014.9 scf44 99.69 True fake: scaffold gap size wrong estimation (local) 40589181 40592996 416627 412916 NC_000014.9 scf44 95.69 True fake: scaffold gap size wrong estimation (local) 40587119 40589377 419456 417203 NC_000014.9 scf44 99.6 True fake: scaffold gap size wrong estimation (local) 40579796 40587217 429262 420909 NC_000014.9 scf44 97.48 True fake: scaffold gap size wrong estimation (local) 40566767 40579841 444947 429986 NC_000014.9 scf44 98.82 True fake: scaffold gap size wrong estimation (local) 40565110 40566280 447354 446184 NC_000014.9 scf44 99.66 True fake: scaffold gap size wrong estimation (local) 40555703 40564936 458605 448576 NC_000014.9 scf44 96.64 True fake: scaffold gap size wrong estimation (local) 40551198 40555398 463966 459636 NC_000014.9 scf44 97.26 True fake: scaffold gap size wrong estimation (local) 40548328 40551290 467914 464952 NC_000014.9 scf44 99.87 True fake: scaffold gap size wrong estimation (local) 40545179 40548396 471823 468606 NC_000014.9 scf44 99.72 True fake: scaffold gap size wrong estimation (local) 40541278 40544360 476475 473431 NC_000014.9 scf44 98.48 True fake: scaffold gap size wrong estimation (local) 40538131 40541442 480672 477323 NC_000014.9 scf44 98.54 True fake: scaffold gap size wrong estimation (local) 40529560 40538229 490668 481382 NC_000014.9 scf44 97.04 True fake: scaffold gap size wrong estimation (local) 40527897 40529658 493264 491503 NC_000014.9 scf44 99.89 True fake: scaffold gap size wrong estimation (local) 40523976 40527455 498028 494565 NC_000014.9 scf44 99.28 True fake: scaffold gap size wrong estimation (local) 40523035 40524071 499826 498790 NC_000014.9 scf44 99.71 True fake: scaffold gap size wrong estimation (local) 40520869 40522999 502540 500410 NC_000014.9 scf44 99.91 True fake: scaffold gap size wrong estimation (local) 40519632 40520868 504879 503643 NC_000014.9 scf44 99.92 True local misassembly 40515726 40519140 508294 504880 NC_000014.9 scf44 100.0 True fake: scaffold gap size wrong estimation (local) 40513860 40515823 510980 509017 NC_000014.9 scf44 99.85 True fake: scaffold gap size wrong estimation (local) 40511332 40513949 514381 511753 NC_000014.9 scf44 99.35 True fake: scaffold gap size wrong estimation (local) 40500181 40511426 526339 515095 NC_000014.9 scf44 99.88 True fake: scaffold gap size wrong estimation (local) 40492380 40500074 535622 527206 NC_000014.9 scf44 99.79 True fake: scaffold gap size wrong estimation (local) 40487248 40492247 541549 536550 NC_000014.9 scf44 99.88 True fake: scaffold gap size wrong estimation (local) 40458598 40487345 570989 542223 NC_000014.9 scf44 99.81 True fake: scaffold gap size wrong estimation (local) 40455687 40458387 575548 571915 NC_000014.9 scf44 99.82 True fake: scaffold gap size wrong estimation (local) 40451429 40455515 580769 576646 NC_000014.9 scf44 98.98 True fake: scaffold gap size wrong estimation (local) 40437641 40451328 596021 581820 NC_000014.9 scf44 97.78 True fake: scaffold gap size wrong estimation (local) 40424398 40437734 609982 596646 NC_000014.9 scf44 99.79 True fake: scaffold gap size wrong estimation (local) 40409581 40422512 627286 612409 NC_000014.9 scf44 99.62 True fake: scaffold gap size wrong estimation (local) 40396266 40409620 642935 628017 NC_000014.9 scf44 99.51 True local misassembly 40394829 40396147 644279 642961 NC_000014.9 scf44 99.7 True fake: scaffold gap size wrong estimation (local) 40388987 40394927 650931 644992 NC_000014.9 scf44 99.68 True fake: scaffold gap size wrong estimation (local) 40388255 40389082 652729 651902 NC_000014.9 scf44 99.88 True fake: scaffold gap size wrong estimation (local) 40382733 40388063 659193 653865 NC_000014.9 scf44 99.91 True fake: scaffold gap size wrong estimation (local) 40381605 40382609 661198 660183 NC_000014.9 scf44 98.92 True CONTIG scf44 661198 correct 83645252 83651390 1 5959 NC_000014.9 scf45 96.99 True fake: scaffold gap size wrong estimation (local) 83651336 83670914 6774 26354 NC_000014.9 scf45 99.93 True fake: scaffold gap size wrong estimation (local) 83670819 83676386 27031 32596 NC_000014.9 scf45 99.91 True fake: scaffold gap size wrong estimation (local) 83676318 83704825 33259 61764 NC_000014.9 scf45 99.92 True fake: scaffold gap size wrong estimation (local) 83705022 83719172 62671 77577 NC_000014.9 scf45 99.51 True fake: scaffold gap size wrong estimation (local) 83719484 83725404 78563 84483 NC_000014.9 scf45 99.78 True fake: scaffold gap size wrong estimation (local) 83725312 83729831 85189 89708 NC_000014.9 scf45 99.96 True fake: scaffold gap size wrong estimation (local) 83729933 83732232 90601 92899 NC_000014.9 scf45 99.91 True fake: scaffold gap size wrong estimation (local) 83732156 83734463 93638 95945 NC_000014.9 scf45 99.91 True fake: scaffold gap size wrong estimation (local) 83734369 83745727 96570 108716 NC_000014.9 scf45 99.86 True fake: scaffold gap size wrong estimation (local) 83745628 83750665 109363 114400 NC_000014.9 scf45 99.92 True fake: scaffold gap size wrong estimation (local) 83750569 83768048 114995 132475 NC_000014.9 scf45 99.94 True fake: scaffold gap size wrong estimation (local) 83768257 83784287 133462 150242 NC_000014.9 scf45 99.94 True fake: scaffold gap size wrong estimation (local) 83784471 83786404 151221 153171 NC_000014.9 scf45 99.03 True fake: scaffold gap size wrong estimation (local) 83786552 83790057 154175 157680 NC_000014.9 scf45 99.94 True fake: scaffold gap size wrong estimation (local) 83790334 83820624 158741 189821 NC_000014.9 scf45 99.88 True fake: scaffold gap size wrong estimation (local) 83820878 83832617 190832 202571 NC_000014.9 scf45 99.97 True fake: scaffold gap size wrong estimation (local) 83832521 83839438 203201 210117 NC_000014.9 scf45 99.91 True fake: scaffold gap size wrong estimation (local) 83839368 83852888 210756 224276 NC_000014.9 scf45 99.94 True fake: scaffold gap size wrong estimation (local) 83852792 83858337 224900 231296 NC_000014.9 scf45 98.82 True relocation, inconsistency = 12376975 96235313 96243281 231297 239265 NC_000014.9 scf45 99.99 True fake: not a misassembly (possible transposable element) 83866568 83868420 239266 241118 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 96244351 96245921 241119 242689 NC_000014.9 scf45 99.94 True fake: not a misassembly (possible transposable element) 83869188 83872688 242690 246096 NC_000014.9 scf45 97.29 True fake: not a misassembly (possible transposable element) 96246694 96260042 246814 260162 NC_000014.9 scf45 99.98 True fake: not a misassembly (possible transposable element) 83884295 83885496 260163 261364 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 96260483 96262640 261365 263520 NC_000014.9 scf45 99.91 True relocation, inconsistency = -12375714 83886927 83897540 263521 274134 NC_000014.9 scf45 99.99 True fake: scaffold gap size wrong estimation (local) 83897441 83904034 274800 281391 NC_000014.9 scf45 99.97 True fake: not a misassembly (possible transposable element) 96277289 96278389 281406 282506 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 83904267 83905162 282508 283403 NC_000014.9 scf45 99.89 True local misassembly 83905397 83918331 283465 296399 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 96290282 96295753 296646 302117 NC_000014.9 scf45 99.95 True fake: not a misassembly (possible transposable element) 83922499 83930175 302182 309857 NC_000014.9 scf45 99.99 True fake: not a misassembly (possible transposable element) 96301984 96307526 309858 315398 NC_000014.9 scf45 99.82 True fake: not a misassembly (possible transposable element) 83934020 83934609 315399 315986 NC_000014.9 scf45 99.66 True fake: not a misassembly (possible transposable element) 96308422 96314824 316956 323341 NC_000014.9 scf45 99.63 True fake: not a misassembly (possible transposable element) 83937502 83941158 323384 327040 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 96317753 96324485 327041 333773 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 83947165 83953704 333774 340313 NC_000014.9 scf45 99.98 True relocation, inconsistency = 12376559 96330264 96342576 340314 353427 NC_000014.9 scf45 95.67 True relocation, inconsistency = -12378030 83964547 83980372 353428 370014 NC_000014.9 scf45 97.58 True relocation, inconsistency = 12375983 96356356 96368277 370015 381935 NC_000014.9 scf45 99.93 True relocation, inconsistency = -12377972 83990306 83994108 381936 385736 NC_000014.9 scf45 99.87 True fake: scaffold gap size wrong estimation (local) 83994040 83994861 386542 387363 NC_000014.9 scf45 100.0 True local misassembly 83996042 83998309 388417 390684 NC_000014.9 scf45 99.87 True fake: not a misassembly (possible transposable element) 96374609 96375483 390685 391558 NC_000014.9 scf45 99.89 True fake: not a misassembly (possible transposable element) 83999188 84000517 392278 393607 NC_000014.9 scf45 100.0 True relocation, inconsistency = 12376215 96376733 96387789 393608 404666 NC_000014.9 scf45 99.9 True fake: not a misassembly (possible transposable element) 84008953 84014980 404667 410694 NC_000014.9 scf45 99.97 True fake: not a misassembly (possible transposable element) 96392266 96392780 410754 411267 NC_000014.9 scf45 99.61 True relocation, scaffold gap is present, inconsistency = -12377943 84015128 84022463 411558 418893 NC_000014.9 scf45 99.93 True fake: not a misassembly (possible transposable element) 96397467 96400053 419230 421816 NC_000014.9 scf45 99.92 True fake: not a misassembly (possible transposable element) 84024077 84028216 422129 426268 NC_000014.9 scf45 99.95 True fake: not a misassembly (possible transposable element) 96402856 96404230 426283 427664 NC_000014.9 scf45 99.28 True fake: not a misassembly (possible transposable element) 84028831 84044408 427665 443238 NC_000014.9 scf45 99.92 True fake: not a misassembly (possible transposable element) 96416997 96419864 443241 446108 NC_000014.9 scf45 99.9 True fake: not a misassembly (possible transposable element) 84046496 84047128 446109 446741 NC_000014.9 scf45 100.0 True local misassembly 84047129 84049483 447572 449926 NC_000014.9 scf45 100.0 True fake: not a misassembly (possible transposable element) 96422563 96428229 450543 456209 NC_000014.9 scf45 99.98 True fake: not a misassembly (possible transposable element) 84054252 84088438 456210 491180 NC_000014.9 scf45 99.97 True fake: scaffold gap size wrong estimation (local) 84088346 84094649 491852 498155 NC_000014.9 scf45 99.95 True fake: scaffold gap size wrong estimation (local) 84094568 84099372 498840 504411 NC_000014.9 scf45 98.74 True fake: scaffold gap size wrong estimation (local) 84101738 84107149 510872 516188 NC_000014.9 scf45 98.12 True fake: scaffold gap size wrong estimation (local) 84107059 84113563 516909 523435 NC_000014.9 scf45 99.56 True fake: scaffold gap size wrong estimation (local) 84113755 84115132 524476 525853 NC_000014.9 scf45 99.64 True CONTIG scf45 525853 misassembled 19904373 19912074 7702 1 NC_000014.9 scf46 99.92 True fake: scaffold gap size wrong estimation (local) 19898700 19904076 14175 8799 NC_000014.9 scf46 99.83 True fake: scaffold gap size wrong estimation (local) 19892888 19898291 20676 15274 NC_000014.9 scf46 99.91 True fake: scaffold gap size wrong estimation (local) 19888434 19892979 26161 21318 NC_000014.9 scf46 96.22 True fake: scaffold gap size wrong estimation (local) 19883017 19888496 32571 27046 NC_000014.9 scf46 99.04 True relocation, inconsistency = -18032072 37892188 37915088 55476 32572 NC_000014.9 scf46 99.87 True fake: scaffold gap size wrong estimation (local) 37886133 37892286 63468 56241 NC_000014.9 scf46 98.31 True fake: scaffold gap size wrong estimation (local) 37882396 37886229 67931 64097 NC_000014.9 scf46 99.9 True fake: scaffold gap size wrong estimation (local) 37863726 37882220 88013 68796 NC_000014.9 scf46 99.78 True fake: scaffold gap size wrong estimation (local) 37859092 37863066 93483 89509 NC_000014.9 scf46 100.0 True fake: scaffold gap size wrong estimation (local) 37841020 37859187 113910 94111 NC_000014.9 scf46 99.38 True fake: scaffold gap size wrong estimation (local) 37839227 37839936 116403 115694 NC_000014.9 scf46 99.86 True local misassembly 37839852 37840379 116951 116404 NC_000014.9 scf46 95.99 True fake: scaffold gap size wrong estimation (local) 37833063 37839167 124610 118479 NC_000014.9 scf46 99.28 True fake: scaffold gap size wrong estimation (local) 37812011 37833151 147743 125200 NC_000014.9 scf46 99.44 True fake: scaffold gap size wrong estimation (local) 37809423 37812110 151081 148394 NC_000014.9 scf46 99.93 True fake: scaffold gap size wrong estimation (local) 37802877 37809268 159738 152070 NC_000014.9 scf46 97.75 True fake: scaffold gap size wrong estimation (local) 37792783 37802950 170621 160454 NC_000014.9 scf46 99.86 True fake: scaffold gap size wrong estimation (local) 37786115 37792874 178711 171254 NC_000014.9 scf46 99.5 True fake: scaffold gap size wrong estimation (local) 37785048 37785873 180322 179497 NC_000014.9 scf46 99.76 True fake: scaffold gap size wrong estimation (local) 37783341 37783969 182036 181408 NC_000014.9 scf46 99.68 True CONTIG scf46 182036 misassembled 27362113 27362797 1 705 NC_000014.9 scf47 97.02 True fake: scaffold gap size wrong estimation (local) 27363144 27378009 1878 18630 NC_000014.9 scf47 98.75 True fake: scaffold gap size wrong estimation (local) 27378212 27406169 19621 47592 NC_000014.9 scf47 99.68 True fake: scaffold gap size wrong estimation (local) 27406076 27409083 48262 51273 NC_000014.9 scf47 99.6 True fake: scaffold gap size wrong estimation (local) 27409244 27419328 52212 62297 NC_000014.9 scf47 99.91 True fake: scaffold gap size wrong estimation (local) 27419232 27433722 62957 77116 NC_000014.9 scf47 97.53 True fake: scaffold gap size wrong estimation (local) 27433639 27443826 77790 88680 NC_000014.9 scf47 99.2 True fake: scaffold gap size wrong estimation (local) 27443733 27448894 89419 95300 NC_000014.9 scf47 98.98 True fake: scaffold gap size wrong estimation (local) 27448795 27458956 96055 106218 NC_000014.9 scf47 99.94 True CONTIG scf47 106218 correct 30175600 30203385 1 27819 NC_000014.9 scf48 99.77 True fake: scaffold gap size wrong estimation (local) 30203507 30206261 28712 31466 NC_000014.9 scf48 100.0 True fake: scaffold gap size wrong estimation (local) 30206805 30256391 32867 84718 NC_000014.9 scf48 98.84 True fake: scaffold gap size wrong estimation (local) 30256304 30269420 85362 98478 NC_000014.9 scf48 99.98 True fake: scaffold gap size wrong estimation (local) 30269671 30277646 99523 107498 NC_000014.9 scf48 99.99 True fake: scaffold gap size wrong estimation (local) 30277569 30283308 108197 114436 NC_000014.9 scf48 98.64 True fake: scaffold gap size wrong estimation (local) 30283497 30334375 115637 171119 NC_000014.9 scf48 99.56 True fake: scaffold gap size wrong estimation (local) 30334294 30335080 172579 173365 NC_000014.9 scf48 99.75 True local misassembly 30335843 30336587 173366 174110 NC_000014.9 scf48 100.0 True fake: scaffold gap size wrong estimation (local) 30336490 30340315 175613 179438 NC_000014.9 scf48 99.95 True fake: scaffold gap size wrong estimation (local) 30340222 30343396 180204 183244 NC_000014.9 scf48 95.78 True fake: scaffold gap size wrong estimation (local) 30343581 30353061 184291 193773 NC_000014.9 scf48 99.97 True fake: scaffold gap size wrong estimation (local) 30353015 30360230 194479 201694 NC_000014.9 scf48 99.97 True fake: scaffold gap size wrong estimation (local) 30360415 30361239 202782 203606 NC_000014.9 scf48 99.88 True local misassembly 30361454 30363283 203607 205436 NC_000014.9 scf48 99.84 True CONTIG scf48 206831 correct 48486228 48495195 1 8965 NC_000014.9 scf49 99.8 True fake: scaffold gap size wrong estimation (local) 48495108 48514718 9669 30008 NC_000014.9 scf49 99.86 True fake: scaffold gap size wrong estimation (local) 48514632 48541994 30671 58050 NC_000014.9 scf49 99.85 True fake: scaffold gap size wrong estimation (local) 48541900 48544088 58706 60897 NC_000014.9 scf49 99.82 True fake: scaffold gap size wrong estimation (local) 48544896 48561744 62412 79258 NC_000014.9 scf49 99.84 True fake: scaffold gap size wrong estimation (local) 48561645 48570574 79901 88830 NC_000014.9 scf49 99.96 True CONTIG scf49 88845 correct 62204857 62233659 1 29526 NC_000014.9 scf50 99.77 True fake: scaffold gap size wrong estimation (local) 62233838 62236299 30449 32910 NC_000014.9 scf50 99.92 True fake: scaffold gap size wrong estimation (local) 62236205 62255843 33592 54198 NC_000014.9 scf50 99.7 True fake: scaffold gap size wrong estimation (local) 62255753 62283087 54958 82273 NC_000014.9 scf50 99.74 True fake: scaffold gap size wrong estimation (local) 62283182 62284585 83061 84478 NC_000014.9 scf50 98.1 True CONTIG scf50 84503 correct 38196252 38216802 1 22001 NC_000014.9 scf51 99.33 True fake: scaffold gap size wrong estimation (local) 38216713 38219470 22637 25394 NC_000014.9 scf51 99.85 True fake: scaffold gap size wrong estimation (local) 38219433 38221949 26193 28705 NC_000014.9 scf51 99.8 True fake: scaffold gap size wrong estimation (local) 38222040 38223165 29702 30825 NC_000014.9 scf51 99.82 True fake: scaffold gap size wrong estimation (local) 38223363 38224164 30982 31783 NC_000014.9 scf51 99.88 True fake: scaffold gap size wrong estimation (local) 38224296 38250104 32759 58563 NC_000014.9 scf51 99.94 True fake: scaffold gap size wrong estimation (local) 38250008 38259369 59195 68550 NC_000014.9 scf51 99.86 True fake: scaffold gap size wrong estimation (local) 38259477 38263936 69409 73895 NC_000014.9 scf51 99.22 True fake: scaffold gap size wrong estimation (local) 38264059 38265357 74723 76034 NC_000014.9 scf51 99.01 True fake: scaffold gap size wrong estimation (local) 38265262 38266395 77714 78861 NC_000014.9 scf51 98.52 True fake: scaffold gap size wrong estimation (local) 38268193 38273576 81469 86846 NC_000014.9 scf51 99.74 True fake: scaffold gap size wrong estimation (local) 38273479 38277033 87526 91040 NC_000014.9 scf51 98.76 True fake: scaffold gap size wrong estimation (local) 38276936 38287383 91770 102868 NC_000014.9 scf51 99.54 True fake: scaffold gap size wrong estimation (local) 38287662 38292896 103959 109198 NC_000014.9 scf51 99.79 True fake: scaffold gap size wrong estimation (local) 38292801 38306196 109821 126028 NC_000014.9 scf51 95.55 True fake: scaffold gap size wrong estimation (local) 38306280 38307147 127239 128106 NC_000014.9 scf51 99.88 True local misassembly 38307617 38309308 128107 129798 NC_000014.9 scf51 99.88 True fake: scaffold gap size wrong estimation (local) 38309216 38325445 130896 147821 NC_000014.9 scf51 99.18 True fake: scaffold gap size wrong estimation (local) 38325849 38328598 148891 151640 NC_000014.9 scf51 99.93 True fake: scaffold gap size wrong estimation (local) 38328500 38362326 152509 187853 NC_000014.9 scf51 99.3 True relocation, inconsistency = 55779060 94141399 94143865 190334 187866 NC_000014.9 scf51 99.72 True fake: scaffold gap size wrong estimation (local) 94140717 94141482 191944 191179 NC_000014.9 scf51 100.0 True relocation, inconsistency = 55767715 38364701 38372971 191975 200245 NC_000014.9 scf51 99.65 True fake: not a misassembly (possible transposable element) 94131755 94133434 201923 200246 NC_000014.9 scf51 99.64 True fake: not a misassembly (possible transposable element) 38373873 38375503 201924 203554 NC_000014.9 scf51 99.82 True fake: not a misassembly (possible transposable element) 94128952 94130839 205442 203555 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 38376524 38377789 205443 206708 NC_000014.9 scf51 99.84 True relocation, inconsistency = 55747130 94124921 94128482 210271 206710 NC_000014.9 scf51 99.89 True fake: scaffold gap size wrong estimation (local) 94117455 94124920 218465 211000 NC_000014.9 scf51 99.91 True fake: not a misassembly (possible transposable element) 38388118 38389799 218466 220147 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 94115794 94116544 220898 220148 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 38389711 38394203 220900 225390 NC_000014.9 scf51 99.96 True fake: not a misassembly (possible transposable element) 94108191 94112150 229350 225391 NC_000014.9 scf51 100.0 True relocation, inconsistency = 55700362 38397446 38407828 229351 239732 NC_000014.9 scf51 99.92 True relocation, inconsistency = 55688867 94096696 94099440 242478 239733 NC_000014.9 scf51 99.82 True relocation, inconsistency = 16528075 77566995 77568612 242487 244104 NC_000014.9 scf51 99.69 True relocation, inconsistency = -39158014 38410599 38412081 244105 245587 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 94093339 94095202 247451 245588 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 38413139 38417780 247466 252107 NC_000014.9 scf51 99.98 True fake: not a misassembly (possible transposable element) 94087623 94089391 253875 252108 NC_000014.9 scf51 99.72 True fake: not a misassembly (possible transposable element) 38418831 38424714 253876 259759 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 94080721 94082520 261559 259760 NC_000014.9 scf51 99.89 True fake: not a misassembly (possible transposable element) 38425695 38427530 261560 263395 NC_000014.9 scf51 99.95 True relocation, inconsistency = 55649115 94076649 94079644 266394 263399 NC_000014.9 scf51 99.93 True relocation, inconsistency = 16490483 77585475 77586163 266395 267085 NC_000014.9 scf51 99.71 True relocation, inconsistency = -39157151 38429013 38431156 267086 269228 NC_000014.9 scf51 99.86 True fake: not a misassembly (possible transposable element) 94072551 94074548 271222 269229 NC_000014.9 scf51 99.75 True fake: not a misassembly (possible transposable element) 38432409 38437012 271223 275826 NC_000014.9 scf51 99.87 True relocation, inconsistency = 39155041 77592411 77596195 276184 279968 NC_000014.9 scf51 99.87 True relocation, inconsistency = 16469144 94065397 94066038 280679 280024 NC_000014.9 scf51 97.72 True relocation, inconsistency = 55622483 38440370 38442913 280680 283229 NC_000014.9 scf51 99.69 True relocation, inconsistency = 39154824 77598035 77601333 283527 286824 NC_000014.9 scf51 99.91 True relocation, inconsistency = 16452307 94053641 94060835 294019 286825 NC_000014.9 scf51 99.99 True fake: not a misassembly (possible transposable element) 77606360 77610988 294020 298656 NC_000014.9 scf51 99.72 True fake: not a misassembly (possible transposable element) 94042737 94049774 305694 298657 NC_000014.9 scf51 99.96 True fake: not a misassembly (possible transposable element) 77617060 77619778 306151 308869 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 94035389 94040304 313785 308870 NC_000014.9 scf51 99.96 True relocation, inconsistency = 55547373 38469119 38488015 313786 332681 NC_000014.9 scf51 99.88 True relocation, inconsistency = 39151676 77639692 77640811 332682 333800 NC_000014.9 scf51 99.91 True fake: not a misassembly (possible transposable element) 94013094 94016847 337563 333811 NC_000014.9 scf51 99.97 True fake: not a misassembly (possible transposable element) 77643227 77645525 337859 340157 NC_000014.9 scf51 100.0 True relocation, inconsistency = 16364861 94010390 94011244 341012 340158 NC_000014.9 scf51 99.88 True relocation, inconsistency = 55495514 38494822 38514875 341013 361065 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 93986930 93991946 366082 361066 NC_000014.9 scf51 99.94 True fake: not a misassembly (possible transposable element) 38518735 38527241 366622 375128 NC_000014.9 scf51 99.98 True relocation, scaffold gap is present, inconsistency = 55450594 93978087 93979974 377267 375380 NC_000014.9 scf51 99.89 True relocation, inconsistency = 16303034 77673815 77675052 377268 378505 NC_000014.9 scf51 99.6 True relocation, inconsistency = -39145162 38529891 38530487 378506 379100 NC_000014.9 scf51 99.5 True relocation, inconsistency = 55438273 93968761 93977063 387407 379101 NC_000014.9 scf51 99.92 True relocation, inconsistency = 16285952 77681566 77682782 387433 388649 NC_000014.9 scf51 99.75 True relocation, inconsistency = -39144238 38538545 38540805 388650 390910 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 93964815 93966018 392114 390911 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 38541253 38543431 392115 394293 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 93962260 93963446 395480 394294 NC_000014.9 scf51 99.83 True fake: not a misassembly (possible transposable element) 38544252 38548872 395917 400533 NC_000014.9 scf51 99.76 True fake: not a misassembly (possible transposable element) 93951264 93957882 407152 400534 NC_000014.9 scf51 99.85 True fake: not a misassembly (possible transposable element) 38554731 38557915 407153 410337 NC_000014.9 scf51 100.0 True relocation, inconsistency = 55389795 93947711 93948859 411489 410338 NC_000014.9 scf51 99.65 True fake: not a misassembly (possible transposable element) 77700534 77702222 411490 413178 NC_000014.9 scf51 99.88 True fake: not a misassembly (possible transposable element) 93943365 93946858 416672 413179 NC_000014.9 scf51 99.89 True relocation, inconsistency = 55379883 38561911 38563481 416673 418243 NC_000014.9 scf51 99.94 True fake: not a misassembly (possible transposable element) 77706230 77712436 418244 424450 NC_000014.9 scf51 99.89 True fake: not a misassembly (possible transposable element) 38568953 38577242 424451 432740 NC_000014.9 scf51 99.84 True fake: not a misassembly (possible transposable element) 93926970 93929695 435482 432741 NC_000014.9 scf51 99.34 True fake: not a misassembly (possible transposable element) 38579193 38583369 435483 439659 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 77724658 77725255 440058 440655 NC_000014.9 scf51 99.83 True fake: not a misassembly (possible transposable element) 38583623 38590080 440657 447114 NC_000014.9 scf51 99.97 True fake: not a misassembly (possible transposable element) 93913538 93916855 450432 447115 NC_000014.9 scf51 99.91 True fake: not a misassembly (possible transposable element) 38592676 38596196 450433 453953 NC_000014.9 scf51 99.91 True relocation, inconsistency = 55310134 93906331 93910788 458411 453954 NC_000014.9 scf51 99.98 True fake: not a misassembly (possible transposable element) 77738478 77740050 458683 460255 NC_000014.9 scf51 99.94 True fake: not a misassembly (possible transposable element) 93901808 93905251 463707 460264 NC_000014.9 scf51 99.83 True relocation, inconsistency = 16157147 77742962 77744469 463898 465404 NC_000014.9 scf51 99.87 True relocation, inconsistency = -39139781 38604689 38621829 465405 482553 NC_000014.9 scf51 99.92 True fake: not a misassembly (possible transposable element) 77756343 77762528 482554 488734 NC_000014.9 scf51 99.84 True fake: not a misassembly (possible transposable element) 38627259 38627965 488735 489441 NC_000014.9 scf51 100.0 True relocation, inconsistency = 55251284 93879250 93882361 492553 489442 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77765542 77766080 492554 493092 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 93876707 93879156 495940 493491 NC_000014.9 scf51 99.76 True relocation, inconsistency = 16106705 77768277 77770001 495941 497665 NC_000014.9 scf51 99.83 True relocation, inconsistency = -33030683 44739319 44752446 497666 510792 NC_000014.9 scf51 99.92 True fake: not a misassembly (possible transposable element) 93862951 93865227 513071 510793 NC_000014.9 scf51 99.87 True fake: not a misassembly (possible transposable element) 44754257 44762209 513380 521332 NC_000014.9 scf51 99.97 True relocation, inconsistency = 49086098 93848308 93856284 529309 521333 NC_000014.9 scf51 99.86 True fake: scaffold gap size wrong estimation (local) 93846817 93848307 531542 530052 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 44770931 44773317 531543 533929 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 93830080 93846179 550017 533930 NC_000014.9 scf51 99.83 True fake: not a misassembly (possible transposable element) 44787899 44791048 550027 553176 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 93826645 93828363 555294 553574 NC_000014.9 scf51 99.77 True relocation, inconsistency = 16013923 77811534 77812721 555295 556482 NC_000014.9 scf51 99.83 True relocation, inconsistency = -33019094 44793628 44798882 556483 561737 NC_000014.9 scf51 100.0 True relocation, inconsistency = 49021451 93820421 93821811 563128 561738 NC_000014.9 scf51 99.66 True relocation, inconsistency = 34739654 59078804 59080766 563129 565091 NC_000014.9 scf51 99.95 True relocation, inconsistency = -14279310 44801457 44804274 565092 567909 NC_000014.9 scf51 99.96 True relocation, inconsistency = 33017487 77821762 77823650 567910 569798 NC_000014.9 scf51 99.95 True relocation, inconsistency = -18738985 59084666 59094955 569799 580087 NC_000014.9 scf51 99.87 True relocation, inconsistency = -14281425 44813531 44822264 580088 588821 NC_000014.9 scf51 99.99 True relocation, inconsistency = 14279765 59102030 59103372 588822 590164 NC_000014.9 scf51 100.0 True relocation, inconsistency = 18734324 77837697 77840617 590165 593081 NC_000014.9 scf51 99.76 True fake: not a misassembly (possible transposable element) 44825919 44827277 593194 594552 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77841167 77841694 594747 595274 NC_000014.9 scf51 99.81 True local misassembly 77842188 77843752 595361 596920 NC_000014.9 scf51 99.43 True relocation, inconsistency = -33014831 44828922 44840651 596921 608650 NC_000014.9 scf51 100.0 True relocation, inconsistency = 14277089 59117741 59126119 608651 617030 NC_000014.9 scf51 99.86 True fake: not a misassembly (possible transposable element) 77860169 77862071 617081 618983 NC_000014.9 scf51 99.74 True fake: not a misassembly (possible transposable element) 59127158 59128139 618984 619965 NC_000014.9 scf51 99.9 True relocation, inconsistency = -14278428 44849712 44853456 619966 623710 NC_000014.9 scf51 100.0 True relocation, inconsistency = 33011851 77865308 77872842 623711 631246 NC_000014.9 scf51 99.84 True fake: not a misassembly (possible transposable element) 59136811 59137914 631260 632363 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77873214 77874782 632418 633986 NC_000014.9 scf51 99.94 True relocation, inconsistency = -33014526 44860257 44870768 633987 644498 NC_000014.9 scf51 100.0 True relocation, inconsistency = 33012333 77883102 77886705 644499 648102 NC_000014.9 scf51 99.97 True fake: not a misassembly (possible transposable element) 59150391 59152822 648103 650534 NC_000014.9 scf51 99.96 True fake: not a misassembly (possible transposable element) 77888393 77889904 650535 652046 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 44876762 44879720 652047 655005 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77892074 77893793 655006 656725 NC_000014.9 scf51 99.83 True relocation, inconsistency = -18736448 59157346 59164117 656726 663497 NC_000014.9 scf51 99.97 True fake: not a misassembly (possible transposable element) 44886314 44888182 663743 665611 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 59165485 59166291 665612 666418 NC_000014.9 scf51 99.88 True fake: not a misassembly (possible transposable element) 77901896 77905398 666419 669920 NC_000014.9 scf51 99.86 True fake: not a misassembly (possible transposable element) 59168778 59171208 669921 672351 NC_000014.9 scf51 99.88 True fake: not a misassembly (possible transposable element) 44893371 44894266 672352 673247 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 59171290 59173555 673248 675513 NC_000014.9 scf51 99.96 True relocation, inconsistency = -14277698 44895919 44897430 675575 677086 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77909931 77912473 677087 679629 NC_000014.9 scf51 99.96 True fake: not a misassembly (possible transposable element) 44899084 44899849 679630 680395 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 59176790 59181059 680401 684670 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 44903318 44908619 684671 689972 NC_000014.9 scf51 99.98 True relocation, inconsistency = 14277008 59185628 59195289 689973 699631 NC_000014.9 scf51 99.94 True fake: not a misassembly (possible transposable element) 77927640 77932307 699632 704299 NC_000014.9 scf51 99.96 True fake: not a misassembly (possible transposable element) 59198439 59203121 704300 708976 NC_000014.9 scf51 99.85 True relocation, inconsistency = 18733121 77936243 77938093 708977 710827 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 44924242 44926648 710872 713278 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77939784 77952323 713279 725817 NC_000014.9 scf51 99.78 True fake: not a misassembly (possible transposable element) 44936827 44938494 725818 727435 NC_000014.9 scf51 96.95 True fake: not a misassembly (possible transposable element) 77953171 77958439 727436 733593 NC_000014.9 scf51 99.25 True relocation, inconsistency = -33016424 44942031 44968411 733609 759987 NC_000014.9 scf51 99.99 True fake: not a misassembly (possible transposable element) 77978162 77981457 759988 763283 NC_000014.9 scf51 99.88 True fake: not a misassembly (possible transposable element) 44970999 44975744 763284 768029 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77985373 77986392 768030 769049 NC_000014.9 scf51 99.9 True fake: not a misassembly (possible transposable element) 44975941 44977294 769050 770401 NC_000014.9 scf51 99.85 True fake: not a misassembly (possible transposable element) 77986984 77992347 770402 775784 NC_000014.9 scf51 99.44 True fake: not a misassembly (possible transposable element) 44981091 44985110 775785 779803 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 77995367 77995954 780320 780907 NC_000014.9 scf51 99.83 True fake: not a misassembly (possible transposable element) 44985416 44987449 780908 782941 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 77996772 77999960 782942 786131 NC_000014.9 scf51 99.94 True fake: not a misassembly (possible transposable element) 44989992 44992102 786149 788259 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78001321 78002252 788274 789205 NC_000014.9 scf51 99.57 True fake: not a misassembly (possible transposable element) 44992230 44994665 789206 791560 NC_000014.9 scf51 96.67 True indel: indel (> 5bp) 44994905 44997165 791821 794081 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78005435 78007917 794082 796566 NC_000014.9 scf51 99.84 True fake: not a misassembly (possible transposable element) 44998432 45002933 796942 801443 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78011190 78013215 801444 803469 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 45004154 45004958 803470 804274 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78013454 78014466 805029 806041 NC_000014.9 scf51 99.51 True fake: not a misassembly (possible transposable element) 45005854 45011879 806054 812079 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78020480 78021609 812080 813209 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 45012256 45015342 813210 816295 NC_000014.9 scf51 99.97 True fake: scaffold gap size wrong estimation (local) 45015254 45017688 816988 819414 NC_000014.9 scf51 99.67 True fake: not a misassembly (possible transposable element) 78026239 78028381 819415 821557 NC_000014.9 scf51 99.95 True fake: not a misassembly (possible transposable element) 45018938 45019770 821558 822390 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78028418 78031098 822391 825045 NC_000014.9 scf51 98.88 True fake: not a misassembly (possible transposable element) 45021575 45023363 825046 826847 NC_000014.9 scf51 99.28 True relocation, scaffold gap is present, inconsistency = 33008422 78031949 78034966 827011 830029 NC_000014.9 scf51 99.83 True fake: scaffold gap size wrong estimation (local) 78034872 78045463 830684 841272 NC_000014.9 scf51 99.85 True fake: not a misassembly (possible transposable element) 45034574 45035356 841273 842055 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78045518 78048896 842056 845441 NC_000014.9 scf51 99.47 True fake: scaffold gap size wrong estimation (local) 78048814 78050885 846187 848258 NC_000014.9 scf51 99.95 True relocation, inconsistency = -33011319 45039567 45040843 848259 849535 NC_000014.9 scf51 100.0 True indel: indel (> 5bp) 45040938 45041450 849647 850159 NC_000014.9 scf51 100.0 True relocation, scaffold gap is present, inconsistency = 33010305 78051985 78054213 850389 852643 NC_000014.9 scf51 98.71 True fake: scaffold gap size wrong estimation (local) 78055067 78055673 854297 854905 NC_000014.9 scf51 99.67 True local misassembly 78057297 78057901 856187 856791 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 45045588 45047219 857285 858916 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78058654 78062640 858917 862905 NC_000014.9 scf51 99.85 True fake: not a misassembly (possible transposable element) 45050347 45051576 862906 864135 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78063119 78068238 864137 869257 NC_000014.9 scf51 99.9 True fake: not a misassembly (possible transposable element) 45054788 45055739 869258 870209 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78068443 78073636 870210 875403 NC_000014.9 scf51 99.87 True fake: not a misassembly (possible transposable element) 45059316 45060004 875404 876092 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78074128 78075441 876679 877992 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 45061061 45063500 877993 880432 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78076548 78077702 880438 881592 NC_000014.9 scf51 99.91 True local misassembly 78078186 78078951 881593 882358 NC_000014.9 scf51 99.87 True fake: not a misassembly (possible transposable element) 45064685 45069308 882365 886988 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78082179 78083026 886989 887836 NC_000014.9 scf51 99.76 True fake: not a misassembly (possible transposable element) 45069318 45070021 888482 889185 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78083901 78087443 889613 893157 NC_000014.9 scf51 99.75 True fake: not a misassembly (possible transposable element) 45073002 45077938 893158 898094 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78091145 78096379 898337 903571 NC_000014.9 scf51 99.92 True fake: not a misassembly (possible transposable element) 45081925 45087731 903572 909377 NC_000014.9 scf51 99.97 True fake: not a misassembly (possible transposable element) 78101455 78104423 909378 912350 NC_000014.9 scf51 99.63 True fake: not a misassembly (possible transposable element) 45089954 45092621 912351 915018 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78105672 78109415 915367 919110 NC_000014.9 scf51 99.76 True fake: not a misassembly (possible transposable element) 45096008 45098426 919113 921531 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78110425 78113158 921532 924265 NC_000014.9 scf51 99.93 True fake: not a misassembly (possible transposable element) 45100517 45101664 924297 925444 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78113476 78114453 925445 926422 NC_000014.9 scf51 99.8 True relocation, inconsistency = -33012582 45101872 45111658 926423 936209 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78122675 78127643 936525 941493 NC_000014.9 scf51 99.98 True fake: not a misassembly (possible transposable element) 45116142 45117292 941494 942644 NC_000014.9 scf51 100.0 True fake: not a misassembly (possible transposable element) 78128018 78133265 942645 947901 NC_000014.9 scf51 99.79 True fake: not a misassembly (possible transposable element) 45121006 45122825 947902 949718 NC_000014.9 scf51 99.84 True relocation, inconsistency = 33011508 78134334 78170971 949719 987131 NC_000014.9 scf51 99.59 True fake: scaffold gap size wrong estimation (local) 78171343 78173724 988285 990667 NC_000014.9 scf51 99.96 True fake: scaffold gap size wrong estimation (local) 78173808 78179929 991629 997748 NC_000014.9 scf51 99.9 True fake: scaffold gap size wrong estimation (local) 78179836 78182660 998466 1001290 NC_000014.9 scf51 100.0 True fake: scaffold gap size wrong estimation (local) 78182561 78189742 1001942 1009123 NC_000014.9 scf51 99.74 True fake: scaffold gap size wrong estimation (local) 78189649 78192100 1009868 1012261 NC_000014.9 scf51 97.55 True fake: scaffold gap size wrong estimation (local) 78192007 78207133 1013028 1029627 NC_000014.9 scf51 99.57 True fake: scaffold gap size wrong estimation (local) 78207042 78217808 1030332 1042831 NC_000014.9 scf51 99.16 True fake: scaffold gap size wrong estimation (local) 78217710 78224278 1043583 1050150 NC_000014.9 scf51 99.91 True fake: scaffold gap size wrong estimation (local) 78225982 78231313 1054024 1059310 NC_000014.9 scf51 97.45 True fake: scaffold gap size wrong estimation (local) 78231217 78236818 1060087 1066526 NC_000014.9 scf51 99.45 True fake: scaffold gap size wrong estimation (local) 78236733 78239961 1067274 1070503 NC_000014.9 scf51 99.85 True fake: scaffold gap size wrong estimation (local) 78239867 78244520 1071210 1076701 NC_000014.9 scf51 99.98 True fake: scaffold gap size wrong estimation (local) 78244433 78248378 1077417 1081383 NC_000014.9 scf51 99.37 True fake: scaffold gap size wrong estimation (local) 78248318 78254446 1082063 1088191 NC_000014.9 scf51 99.93 True fake: scaffold gap size wrong estimation (local) 78254683 78258443 1088763 1093619 NC_000014.9 scf51 99.52 True fake: scaffold gap size wrong estimation (local) 78259119 78266358 1095050 1102283 NC_000014.9 scf51 99.82 True fake: scaffold gap size wrong estimation (local) 78266454 78273010 1103094 1110451 NC_000014.9 scf51 99.94 True fake: scaffold gap size wrong estimation (local) 78272911 78289887 1111208 1128184 NC_000014.9 scf51 99.96 True fake: scaffold gap size wrong estimation (local) 78289798 78294653 1128914 1133726 NC_000014.9 scf51 98.3 True fake: scaffold gap size wrong estimation (local) 78294577 78320953 1134448 1164096 NC_000014.9 scf51 97.53 True fake: scaffold gap size wrong estimation (local) 78320861 78332460 1164778 1176375 NC_000014.9 scf51 99.96 True fake: scaffold gap size wrong estimation (local) 78332392 78350257 1177145 1195014 NC_000014.9 scf51 99.85 True fake: scaffold gap size wrong estimation (local) 78350163 78361893 1195643 1207369 NC_000014.9 scf51 99.82 True fake: scaffold gap size wrong estimation (local) 78362248 78366756 1208116 1212625 NC_000014.9 scf51 99.76 True fake: scaffold gap size wrong estimation (local) 78366663 78368568 1213306 1215211 NC_000014.9 scf51 99.84 True fake: scaffold gap size wrong estimation (local) 78368482 78376102 1215840 1223451 NC_000014.9 scf51 99.57 True fake: scaffold gap size wrong estimation (local) 78376022 78378574 1224150 1226698 NC_000014.9 scf51 99.69 True fake: scaffold gap size wrong estimation (local) 78378489 78397765 1227539 1248381 NC_000014.9 scf51 99.67 True fake: scaffold gap size wrong estimation (local) 78398100 78410007 1249496 1262219 NC_000014.9 scf51 99.76 True fake: scaffold gap size wrong estimation (local) 78410322 78421128 1263294 1274928 NC_000014.9 scf51 99.7 True fake: scaffold gap size wrong estimation (local) 78421030 78441988 1275673 1297404 NC_000014.9 scf51 99.68 True fake: scaffold gap size wrong estimation (local) 78442083 78449476 1298276 1305663 NC_000014.9 scf51 99.73 True fake: scaffold gap size wrong estimation (local) 78449386 78473227 1306338 1330882 NC_000014.9 scf51 99.79 True fake: scaffold gap size wrong estimation (local) 78473396 78493385 1331841 1354203 NC_000014.9 scf51 99.38 True fake: scaffold gap size wrong estimation (local) 78493752 78497740 1355281 1359269 NC_000014.9 scf51 99.82 True fake: scaffold gap size wrong estimation (local) 78497643 78503369 1362016 1368619 NC_000014.9 scf51 99.36 True fake: scaffold gap size wrong estimation (local) 78503272 78523572 1369251 1389530 NC_000014.9 scf51 99.8 True fake: scaffold gap size wrong estimation (local) 78523822 78532221 1390558 1398957 NC_000014.9 scf51 99.98 True fake: scaffold gap size wrong estimation (local) 78532322 78533115 1399843 1400640 NC_000014.9 scf51 99.5 True indel: indel (> 5bp) 78533448 78536724 1400931 1404207 NC_000014.9 scf51 100.0 True fake: scaffold gap size wrong estimation (local) 78537259 78537834 1405460 1406035 NC_000014.9 scf51 100.0 True CONTIG scf51 1406035 misassembled 57084200 57100314 20214 3088 NC_000014.9 scf52 99.08 True fake: scaffold gap size wrong estimation (local) 57069626 57084291 36191 21038 NC_000014.9 scf52 98.5 True fake: scaffold gap size wrong estimation (local) 57064491 57069509 42169 37151 NC_000014.9 scf52 100.0 True fake: scaffold gap size wrong estimation (local) 57057089 57064550 50310 42773 NC_000014.9 scf52 98.97 True fake: scaffold gap size wrong estimation (local) 57050361 57055812 58112 52661 NC_000014.9 scf52 99.83 True fake: scaffold gap size wrong estimation (local) 57044847 57050458 64395 58783 NC_000014.9 scf52 99.86 True fake: scaffold gap size wrong estimation (local) 57042733 57044518 67240 65455 NC_000014.9 scf52 99.94 True fake: scaffold gap size wrong estimation (local) 57040360 57042293 70555 68625 NC_000014.9 scf52 99.74 True fake: scaffold gap size wrong estimation (local) 57036239 57040159 75856 71678 NC_000014.9 scf52 99.8 True fake: scaffold gap size wrong estimation (local) 57031565 57036292 81258 76730 NC_000014.9 scf52 95.27 True fake: scaffold gap size wrong estimation (local) 57019590 57031547 94158 82196 NC_000014.9 scf52 99.83 True fake: scaffold gap size wrong estimation (local) 56991728 57019686 123582 94931 NC_000014.9 scf52 99.27 True fake: scaffold gap size wrong estimation (local) 56989356 56991541 125905 123719 NC_000014.9 scf52 99.77 True fake: scaffold gap size wrong estimation (local) 56957509 56988270 160860 127813 NC_000014.9 scf52 99.11 True fake: scaffold gap size wrong estimation (local) 56952729 56957581 166370 161518 NC_000014.9 scf52 99.81 True fake: scaffold gap size wrong estimation (local) 56950316 56952770 169616 167158 NC_000014.9 scf52 99.47 True fake: scaffold gap size wrong estimation (local) 56949227 56950382 171668 170513 NC_000014.9 scf52 99.91 True local misassembly 56947011 56949032 173690 171669 NC_000014.9 scf52 99.9 True fake: scaffold gap size wrong estimation (local) 56942193 56947107 179350 174436 NC_000014.9 scf52 99.9 True fake: scaffold gap size wrong estimation (local) 56935110 56942232 187993 180088 NC_000014.9 scf52 96.0 True fake: scaffold gap size wrong estimation (local) 56934159 56935202 190454 189411 NC_000014.9 scf52 99.9 True fake: scaffold gap size wrong estimation (local) 56924419 56934258 201842 191307 NC_000014.9 scf52 96.96 True fake: scaffold gap size wrong estimation (local) 56912533 56924491 216074 202648 NC_000014.9 scf52 95.46 True fake: scaffold gap size wrong estimation (local) 56900758 56912585 231574 217394 NC_000014.9 scf52 97.47 True fake: scaffold gap size wrong estimation (local) 56897773 56900847 235391 232317 NC_000014.9 scf52 99.97 True fake: scaffold gap size wrong estimation (local) 56883296 56897509 250575 236569 NC_000014.9 scf52 98.5 True fake: scaffold gap size wrong estimation (local) 56876274 56883379 259098 251237 NC_000014.9 scf52 99.4 True fake: scaffold gap size wrong estimation (local) 56866294 56876370 269839 259881 NC_000014.9 scf52 98.57 True fake: scaffold gap size wrong estimation (local) 56861031 56866384 277696 270538 NC_000014.9 scf52 99.34 True fake: scaffold gap size wrong estimation (local) 56859229 56861116 280279 278480 NC_000014.9 scf52 95.34 True fake: scaffold gap size wrong estimation (local) 56843219 56859272 297961 281108 NC_000014.9 scf52 99.66 True fake: scaffold gap size wrong estimation (local) 56838723 56843059 303215 298876 NC_000014.9 scf52 99.79 True fake: scaffold gap size wrong estimation (local) 56834304 56838564 309334 304256 NC_000014.9 scf52 97.8 True local misassembly 56833279 56833943 310033 309369 NC_000014.9 scf52 99.85 True fake: scaffold gap size wrong estimation (local) 56830462 56833296 314746 311912 NC_000014.9 scf52 99.93 True fake: scaffold gap size wrong estimation (local) 56828389 56830554 317659 315494 NC_000014.9 scf52 100.0 True fake: scaffold gap size wrong estimation (local) 56826239 56828485 320708 318457 NC_000014.9 scf52 99.78 True fake: scaffold gap size wrong estimation (local) 56817283 56825883 330388 321788 NC_000014.9 scf52 99.99 True fake: scaffold gap size wrong estimation (local) 56792135 56817378 357840 331115 NC_000014.9 scf52 99.72 True fake: scaffold gap size wrong estimation (local) 56785450 56792217 365304 358540 NC_000014.9 scf52 99.94 True fake: scaffold gap size wrong estimation (local) 56782709 56785543 368736 366027 NC_000014.9 scf52 95.28 True fake: scaffold gap size wrong estimation (local) 56781448 56782792 370795 369450 NC_000014.9 scf52 99.63 True fake: scaffold gap size wrong estimation (local) 56779730 56781117 372431 371045 NC_000014.9 scf52 99.86 True fake: scaffold gap size wrong estimation (local) 56775310 56779827 377639 373121 NC_000014.9 scf52 99.82 True fake: scaffold gap size wrong estimation (local) 56769410 56775409 385105 378303 NC_000014.9 scf52 98.32 True fake: scaffold gap size wrong estimation (local) 56767776 56769281 388831 387326 NC_000014.9 scf52 99.93 True fake: scaffold gap size wrong estimation (local) 56763658 56766471 393632 390819 NC_000014.9 scf52 99.96 True fake: scaffold gap size wrong estimation (local) 56761253 56763517 396783 394569 NC_000014.9 scf52 96.41 True fake: scaffold gap size wrong estimation (local) 56749228 56761350 410180 397525 NC_000014.9 scf52 97.82 True fake: scaffold gap size wrong estimation (local) 56741768 56749313 419305 411042 NC_000014.9 scf52 97.28 True fake: scaffold gap size wrong estimation (local) 56735357 56741859 427224 419934 NC_000014.9 scf52 98.78 True fake: scaffold gap size wrong estimation (local) 56733188 56735452 430113 427849 NC_000014.9 scf52 99.82 True fake: scaffold gap size wrong estimation (local) 56726014 56733077 439775 431100 NC_000014.9 scf52 95.92 True fake: scaffold gap size wrong estimation (local) 56724918 56725805 441920 441033 NC_000014.9 scf52 99.66 True local misassembly 56722528 56724562 444054 442020 NC_000014.9 scf52 99.85 True fake: scaffold gap size wrong estimation (local) 56717543 56722532 449871 444886 NC_000014.9 scf52 99.7 True fake: scaffold gap size wrong estimation (local) 56713465 56717623 454700 450542 NC_000014.9 scf52 99.86 True fake: scaffold gap size wrong estimation (local) 56709922 56713553 458954 455449 NC_000014.9 scf52 96.45 True fake: scaffold gap size wrong estimation (local) 56701889 56710020 468626 459661 NC_000014.9 scf52 98.57 True fake: scaffold gap size wrong estimation (local) 56697328 56702023 475113 469359 NC_000014.9 scf52 98.36 True fake: scaffold gap size wrong estimation (local) 56695798 56697425 477474 475847 NC_000014.9 scf52 99.88 True fake: scaffold gap size wrong estimation (local) 56689934 56695889 484206 478255 NC_000014.9 scf52 99.82 True fake: scaffold gap size wrong estimation (local) 56685925 56690007 489264 485144 NC_000014.9 scf52 99.01 True fake: scaffold gap size wrong estimation (local) 56679119 56685715 497683 490245 NC_000014.9 scf52 99.55 True fake: scaffold gap size wrong estimation (local) 56678671 56679199 499755 499227 NC_000014.9 scf52 99.43 True local misassembly 56676924 56677836 500668 499756 NC_000014.9 scf52 99.78 True fake: scaffold gap size wrong estimation (local) 56674746 56676292 504507 502937 NC_000014.9 scf52 98.15 True fake: scaffold gap size wrong estimation (local) 56673558 56674269 507209 506464 NC_000014.9 scf52 95.31 True CONTIG scf52 507209 correct 87433610 87448146 3 15149 NC_000014.9 scf53 98.42 True fake: scaffold gap size wrong estimation (local) 87448346 87455838 16182 24404 NC_000014.9 scf53 99.96 True fake: scaffold gap size wrong estimation (local) 87455977 87468152 25302 37480 NC_000014.9 scf53 99.97 True fake: scaffold gap size wrong estimation (local) 87468068 87477732 38164 47828 NC_000014.9 scf53 99.99 True fake: scaffold gap size wrong estimation (local) 87477643 87495391 48474 66980 NC_000014.9 scf53 99.98 True fake: scaffold gap size wrong estimation (local) 87495727 87499684 68013 71970 NC_000014.9 scf53 100.0 True fake: scaffold gap size wrong estimation (local) 87499598 87505063 72660 78125 NC_000014.9 scf53 99.98 True fake: scaffold gap size wrong estimation (local) 87504971 87520258 78745 94031 NC_000014.9 scf53 99.96 True fake: scaffold gap size wrong estimation (local) 87520167 87539457 94752 114038 NC_000014.9 scf53 99.91 True fake: scaffold gap size wrong estimation (local) 87539362 87541381 114728 116747 NC_000014.9 scf53 99.8 True fake: scaffold gap size wrong estimation (local) 87541310 87549858 117470 126037 NC_000014.9 scf53 99.68 True fake: scaffold gap size wrong estimation (local) 87549759 87555159 126737 132136 NC_000014.9 scf53 99.93 True fake: scaffold gap size wrong estimation (local) 87555067 87556766 132797 134496 NC_000014.9 scf53 100.0 True fake: scaffold gap size wrong estimation (local) 87556669 87559045 135296 137666 NC_000014.9 scf53 99.71 True fake: scaffold gap size wrong estimation (local) 87558964 87562966 138393 142393 NC_000014.9 scf53 99.88 True fake: scaffold gap size wrong estimation (local) 87563058 87581752 143239 162683 NC_000014.9 scf53 99.88 True fake: scaffold gap size wrong estimation (local) 87581936 87586425 163644 168129 NC_000014.9 scf53 99.69 True fake: scaffold gap size wrong estimation (local) 87586838 87587606 169452 170220 NC_000014.9 scf53 99.74 True fake: scaffold gap size wrong estimation (local) 87587507 87596803 171784 181770 NC_000014.9 scf53 98.61 True fake: scaffold gap size wrong estimation (local) 87596707 87598815 182519 184627 NC_000014.9 scf53 100.0 True fake: scaffold gap size wrong estimation (local) 87598726 87604946 185297 191517 NC_000014.9 scf53 99.94 True fake: scaffold gap size wrong estimation (local) 87604849 87606990 192273 194414 NC_000014.9 scf53 99.95 True fake: scaffold gap size wrong estimation (local) 87606892 87625447 195148 215251 NC_000014.9 scf53 99.38 True fake: scaffold gap size wrong estimation (local) 87625708 87640389 216247 231696 NC_000014.9 scf53 99.51 True fake: scaffold gap size wrong estimation (local) 87640301 87655425 232350 248263 NC_000014.9 scf53 99.88 True fake: scaffold gap size wrong estimation (local) 87655338 87672902 248991 267273 NC_000014.9 scf53 99.05 True fake: scaffold gap size wrong estimation (local) 87672842 87700421 268085 295484 NC_000014.9 scf53 99.24 True fake: scaffold gap size wrong estimation (local) 87700339 87703415 296117 299196 NC_000014.9 scf53 99.74 True fake: scaffold gap size wrong estimation (local) 87703644 87708592 300187 305135 NC_000014.9 scf53 99.88 True fake: scaffold gap size wrong estimation (local) 87708501 87713828 305865 312013 NC_000014.9 scf53 98.7 True fake: scaffold gap size wrong estimation (local) 87713732 87722595 312632 321483 NC_000014.9 scf53 99.68 True fake: scaffold gap size wrong estimation (local) 87722516 87730283 322154 330719 NC_000014.9 scf53 99.7 True fake: scaffold gap size wrong estimation (local) 87730215 87732415 331581 333781 NC_000014.9 scf53 100.0 True fake: scaffold gap size wrong estimation (local) 87733302 87734870 335548 337060 NC_000014.9 scf53 96.43 True local misassembly 87732440 87733362 337097 338043 NC_000014.9 scf53 97.47 True fake: scaffold gap size wrong estimation (local) 87734947 87746043 340424 352238 NC_000014.9 scf53 99.38 True fake: scaffold gap size wrong estimation (local) 87745948 87753031 352926 360009 NC_000014.9 scf53 99.94 True fake: scaffold gap size wrong estimation (local) 87753258 87769281 361130 378001 NC_000014.9 scf53 98.16 True fake: scaffold gap size wrong estimation (local) 87769443 87775546 379119 385222 NC_000014.9 scf53 100.0 True CONTIG scf53 386298 correct 98992849 98995959 1 3115 NC_000014.9 scf54 99.65 True fake: scaffold gap size wrong estimation (local) 98995867 99005007 3792 13799 NC_000014.9 scf54 99.69 True fake: scaffold gap size wrong estimation (local) 99005137 99007887 14773 17523 NC_000014.9 scf54 99.82 True fake: scaffold gap size wrong estimation (local) 99007793 99016587 18180 27367 NC_000014.9 scf54 99.43 True fake: scaffold gap size wrong estimation (local) 99016712 99032650 28444 44398 NC_000014.9 scf54 99.64 True fake: scaffold gap size wrong estimation (local) 99032611 99038875 45103 52168 NC_000014.9 scf54 99.94 True fake: scaffold gap size wrong estimation (local) 99039031 99063530 53130 77493 NC_000014.9 scf54 99.38 True fake: scaffold gap size wrong estimation (local) 99063483 99074141 78331 90598 NC_000014.9 scf54 99.79 True fake: scaffold gap size wrong estimation (local) 99074432 99090259 91689 107516 NC_000014.9 scf54 99.92 True fake: scaffold gap size wrong estimation (local) 99090408 99096687 108396 114677 NC_000014.9 scf54 99.86 True fake: scaffold gap size wrong estimation (local) 99096864 99104568 115620 123348 NC_000014.9 scf54 99.34 True fake: scaffold gap size wrong estimation (local) 99104763 99107589 124268 127527 NC_000014.9 scf54 95.37 True fake: scaffold gap size wrong estimation (local) 99107725 99120989 128532 141798 NC_000014.9 scf54 99.68 True fake: scaffold gap size wrong estimation (local) 99120897 99121951 142568 143622 NC_000014.9 scf54 100.0 True indel: indel (<= 5bp) 99121955 99123009 143623 144677 NC_000014.9 scf54 99.62 True fake: scaffold gap size wrong estimation (local) 99123076 99124010 145882 146816 NC_000014.9 scf54 100.0 True local misassembly 99124437 99125639 146817 148019 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 99125547 99130525 149187 154165 NC_000014.9 scf54 99.94 True fake: scaffold gap size wrong estimation (local) 99131003 99131516 155598 156111 NC_000014.9 scf54 100.0 True local misassembly 99131741 99134726 156112 159097 NC_000014.9 scf54 99.83 True fake: scaffold gap size wrong estimation (local) 99134627 99159187 159776 186646 NC_000014.9 scf54 98.69 True fake: scaffold gap size wrong estimation (local) 99159135 99162117 187372 190352 NC_000014.9 scf54 99.87 True fake: scaffold gap size wrong estimation (local) 99162039 99193038 191223 225023 NC_000014.9 scf54 98.09 True fake: scaffold gap size wrong estimation (local) 99192945 99199737 225696 232490 NC_000014.9 scf54 99.96 True fake: scaffold gap size wrong estimation (local) 99199646 99203271 233164 236789 NC_000014.9 scf54 99.83 True fake: scaffold gap size wrong estimation (local) 99203175 99206623 237518 240966 NC_000014.9 scf54 99.88 True fake: scaffold gap size wrong estimation (local) 99206525 99217477 241634 252588 NC_000014.9 scf54 99.92 True fake: scaffold gap size wrong estimation (local) 99217386 99218090 253402 254106 NC_000014.9 scf54 99.86 True fake: scaffold gap size wrong estimation (local) 99218317 99229042 254218 264820 NC_000014.9 scf54 98.81 True fake: scaffold gap size wrong estimation (local) 99229004 99270790 265609 308845 NC_000014.9 scf54 99.47 True fake: scaffold gap size wrong estimation (local) 99271318 99272475 310190 311348 NC_000014.9 scf54 99.91 True fake: scaffold gap size wrong estimation (local) 99272377 99282086 312325 321828 NC_000014.9 scf54 97.83 True fake: scaffold gap size wrong estimation (local) 99282257 99287981 322984 329472 NC_000014.9 scf54 97.04 True fake: scaffold gap size wrong estimation (local) 99288803 99293654 331057 335908 NC_000014.9 scf54 99.98 True fake: scaffold gap size wrong estimation (local) 99293565 99294914 336597 337944 NC_000014.9 scf54 99.85 True local misassembly 99295002 99299096 337945 342912 NC_000014.9 scf54 99.59 True fake: scaffold gap size wrong estimation (local) 99299223 99301766 343793 346336 NC_000014.9 scf54 99.96 True fake: scaffold gap size wrong estimation (local) 99301993 99305998 347311 351336 NC_000014.9 scf54 99.43 True fake: scaffold gap size wrong estimation (local) 99305972 99313297 351982 360117 NC_000014.9 scf54 99.86 True fake: scaffold gap size wrong estimation (local) 99313209 99315785 360874 363450 NC_000014.9 scf54 99.92 True fake: scaffold gap size wrong estimation (local) 99315710 99332304 364142 382257 NC_000014.9 scf54 98.72 True fake: scaffold gap size wrong estimation (local) 99333267 99337049 383998 387760 NC_000014.9 scf54 99.31 True fake: scaffold gap size wrong estimation (local) 99336963 99338190 388785 390012 NC_000014.9 scf54 99.92 True fake: scaffold gap size wrong estimation (local) 99338097 99348205 390719 400805 NC_000014.9 scf54 99.59 True fake: scaffold gap size wrong estimation (local) 99348609 99355638 401983 409747 NC_000014.9 scf54 95.27 True fake: scaffold gap size wrong estimation (local) 99355548 99356971 410577 412000 NC_000014.9 scf54 99.86 True local misassembly 99357167 99358589 412001 413423 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 99358497 99371580 414322 429693 NC_000014.9 scf54 96.81 True fake: scaffold gap size wrong estimation (local) 99371488 99376487 430624 435636 NC_000014.9 scf54 99.74 True fake: scaffold gap size wrong estimation (local) 99376648 99377192 436558 437102 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 99377225 99377902 437392 438069 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 99379249 99392156 440261 453196 NC_000014.9 scf54 99.76 True fake: scaffold gap size wrong estimation (local) 99392058 99399764 453901 461607 NC_000014.9 scf54 99.91 True fake: scaffold gap size wrong estimation (local) 99399904 99419589 462509 482976 NC_000014.9 scf54 99.47 True fake: scaffold gap size wrong estimation (local) 99419760 99431621 483153 495730 NC_000014.9 scf54 99.98 True fake: scaffold gap size wrong estimation (local) 99431524 99434723 496438 499827 NC_000014.9 scf54 97.12 True fake: scaffold gap size wrong estimation (local) 99434624 99443278 500624 509274 NC_000014.9 scf54 99.95 True fake: scaffold gap size wrong estimation (local) 99443450 99447067 510279 513894 NC_000014.9 scf54 99.89 True fake: scaffold gap size wrong estimation (local) 99446984 99451661 514564 519241 NC_000014.9 scf54 99.89 True fake: scaffold gap size wrong estimation (local) 99451599 99456045 520139 524620 NC_000014.9 scf54 99.11 True fake: scaffold gap size wrong estimation (local) 99455951 99474143 525275 543466 NC_000014.9 scf54 99.81 True fake: scaffold gap size wrong estimation (local) 99474050 99477534 544233 547754 NC_000014.9 scf54 98.69 True fake: scaffold gap size wrong estimation (local) 99477749 99490838 548774 562687 NC_000014.9 scf54 99.89 True fake: scaffold gap size wrong estimation (local) 99490930 99496525 563572 569166 NC_000014.9 scf54 99.89 True fake: scaffold gap size wrong estimation (local) 99496940 99499327 570382 572769 NC_000014.9 scf54 99.96 True fake: scaffold gap size wrong estimation (local) 99499248 99515732 573476 591512 NC_000014.9 scf54 99.48 True fake: scaffold gap size wrong estimation (local) 99515650 99519127 592239 595716 NC_000014.9 scf54 99.8 True fake: scaffold gap size wrong estimation (local) 99519246 99520557 596605 597917 NC_000014.9 scf54 99.7 True fake: scaffold gap size wrong estimation (local) 99520533 99539487 598647 618397 NC_000014.9 scf54 99.62 True relocation, inconsistency = -36602489 62936999 62947975 618398 629374 NC_000014.9 scf54 99.98 True fake: scaffold gap size wrong estimation (local) 62949255 62950663 631400 632808 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 62950569 62951840 633732 635003 NC_000014.9 scf54 100.0 True fake: scaffold gap size wrong estimation (local) 62951965 62960871 636010 644916 NC_000014.9 scf54 99.9 True fake: scaffold gap size wrong estimation (local) 62960783 62976167 645609 661811 NC_000014.9 scf54 99.78 True fake: scaffold gap size wrong estimation (local) 62976383 62978602 662771 664990 NC_000014.9 scf54 100.0 True relocation, inconsistency = -28702458 34276145 34277786 664991 666632 NC_000014.9 scf54 99.94 True fake: scaffold gap size wrong estimation (local) 34278739 34279532 668845 669638 NC_000014.9 scf54 99.87 True local misassembly 34280243 34281365 669639 670761 NC_000014.9 scf54 99.73 True fake: scaffold gap size wrong estimation (local) 34281268 34291391 672039 683716 NC_000014.9 scf54 97.3 True fake: scaffold gap size wrong estimation (local) 34292089 34293027 685147 686108 NC_000014.9 scf54 97.4 True fake: scaffold gap size wrong estimation (local) 34292945 34294575 686536 688166 NC_000014.9 scf54 99.88 True CONTIG scf54 688166 misassembled 36348388 36353195 4808 1 NC_000014.9 scf55 99.92 True fake: scaffold gap size wrong estimation (local) 36344344 36348254 9580 5670 NC_000014.9 scf55 99.87 True fake: scaffold gap size wrong estimation (local) 36342751 36344440 11981 10292 NC_000014.9 scf55 99.82 True fake: scaffold gap size wrong estimation (local) 36321172 36342837 34447 12775 NC_000014.9 scf55 99.79 True fake: scaffold gap size wrong estimation (local) 36306470 36321256 50001 35211 NC_000014.9 scf55 99.88 True fake: scaffold gap size wrong estimation (local) 36302364 36306550 54825 50642 NC_000014.9 scf55 99.79 True fake: scaffold gap size wrong estimation (local) 36288654 36302434 69973 55531 NC_000014.9 scf55 98.89 True fake: scaffold gap size wrong estimation (local) 36269773 36288748 89603 70632 NC_000014.9 scf55 99.9 True fake: scaffold gap size wrong estimation (local) 36260204 36269852 99882 90231 NC_000014.9 scf55 99.89 True fake: scaffold gap size wrong estimation (local) 36249550 36260255 111261 100556 NC_000014.9 scf55 99.94 True fake: scaffold gap size wrong estimation (local) 36247548 36248575 114153 113112 NC_000014.9 scf55 98.46 True fake: scaffold gap size wrong estimation (local) 36245809 36246368 116973 116414 NC_000014.9 scf55 99.64 True fake: scaffold gap size wrong estimation (local) 36210968 36245006 154326 118755 NC_000014.9 scf55 99.39 True fake: scaffold gap size wrong estimation (local) 36190605 36211047 177228 154998 NC_000014.9 scf55 99.4 True CONTIG scf55 177228 correct 43344552 43345123 572 1 NC_000014.9 scf56 100.0 True fake: scaffold gap size wrong estimation (local) 43335008 43342879 10861 2990 NC_000014.9 scf56 99.97 True fake: scaffold gap size wrong estimation (local) 43311005 43334639 36344 11954 NC_000014.9 scf56 99.73 True fake: scaffold gap size wrong estimation (local) 43296453 43310786 51635 37302 NC_000014.9 scf56 99.99 True fake: scaffold gap size wrong estimation (local) 43269534 43295773 80130 53823 NC_000014.9 scf56 99.73 True fake: scaffold gap size wrong estimation (local) 43267978 43269624 82499 80853 NC_000014.9 scf56 99.94 True CONTIG scf56 82499 correct 48611084 48611670 1 587 NC_000014.9 scf57 100.0 True fake: scaffold gap size wrong estimation (local) 48612497 48625166 2278 16495 NC_000014.9 scf57 99.92 True fake: scaffold gap size wrong estimation (local) 48625068 48628426 17144 20504 NC_000014.9 scf57 99.85 True fake: scaffold gap size wrong estimation (local) 48628369 48630950 21181 23762 NC_000014.9 scf57 99.77 True fake: scaffold gap size wrong estimation (local) 48630859 48651784 25043 46828 NC_000014.9 scf57 99.32 True fake: scaffold gap size wrong estimation (local) 48651698 48655561 47449 51312 NC_000014.9 scf57 99.92 True fake: scaffold gap size wrong estimation (local) 48655468 48658586 51988 55106 NC_000014.9 scf57 99.87 True fake: scaffold gap size wrong estimation (local) 48660529 48686308 57658 83446 NC_000014.9 scf57 99.62 True fake: scaffold gap size wrong estimation (local) 48686209 48689092 84031 86914 NC_000014.9 scf57 99.9 True fake: scaffold gap size wrong estimation (local) 48689242 48691561 87866 90178 NC_000014.9 scf57 98.5 True fake: scaffold gap size wrong estimation (local) 48691479 48697024 91011 97296 NC_000014.9 scf57 97.93 True fake: scaffold gap size wrong estimation (local) 48696943 48698069 98033 99159 NC_000014.9 scf57 99.73 True fake: scaffold gap size wrong estimation (local) 48698190 48699010 99305 100125 NC_000014.9 scf57 99.88 True fake: scaffold gap size wrong estimation (local) 48699689 48700196 101705 102212 NC_000014.9 scf57 99.8 True CONTIG scf57 102212 correct 84513344 84551646 1 39025 NC_000014.9 scf58 99.56 True fake: scaffold gap size wrong estimation (local) 84551552 84553417 39686 41554 NC_000014.9 scf58 99.68 True fake: scaffold gap size wrong estimation (local) 84553327 84562321 42332 52038 NC_000014.9 scf58 99.41 True fake: scaffold gap size wrong estimation (local) 84562252 84564161 52850 54759 NC_000014.9 scf58 100.0 True fake: scaffold gap size wrong estimation (local) 84564092 84571393 55476 62771 NC_000014.9 scf58 99.81 True fake: scaffold gap size wrong estimation (local) 84571300 84584666 63186 77455 NC_000014.9 scf58 99.88 True fake: scaffold gap size wrong estimation (local) 84584592 84594428 78162 88905 NC_000014.9 scf58 97.8 True fake: scaffold gap size wrong estimation (local) 84594336 84596294 89664 91622 NC_000014.9 scf58 100.0 True fake: scaffold gap size wrong estimation (local) 84596528 84600594 92003 96810 NC_000014.9 scf58 99.48 True fake: scaffold gap size wrong estimation (local) 84600791 84606511 97723 103441 NC_000014.9 scf58 99.74 True fake: scaffold gap size wrong estimation (local) 84606465 84616630 104152 115577 NC_000014.9 scf58 98.82 True fake: scaffold gap size wrong estimation (local) 84617042 84643247 116827 144554 NC_000014.9 scf58 99.81 True fake: scaffold gap size wrong estimation (local) 84643157 84648657 145246 150746 NC_000014.9 scf58 99.84 True fake: scaffold gap size wrong estimation (local) 84648565 84651684 151486 154617 NC_000014.9 scf58 99.14 True fake: scaffold gap size wrong estimation (local) 84651617 84652117 155330 155830 NC_000014.9 scf58 100.0 True CONTIG scf58 155916 correct 80240109 80246069 5996 1 NC_000014.9 scf59 99.4 True fake: scaffold gap size wrong estimation (local) 80236976 80240163 9885 6698 NC_000014.9 scf59 100.0 True fake: scaffold gap size wrong estimation (local) 80232488 80237075 15169 10582 NC_000014.9 scf59 99.93 True fake: scaffold gap size wrong estimation (local) 80220123 80232584 28293 15838 NC_000014.9 scf59 99.9 True fake: scaffold gap size wrong estimation (local) 80219507 80220040 29833 29300 NC_000014.9 scf59 100.0 True indel: indel (<= 5bp) 80218849 80219504 30489 29834 NC_000014.9 scf59 100.0 True local misassembly 80216327 80218546 32709 30490 NC_000014.9 scf59 99.86 True fake: scaffold gap size wrong estimation (local) 80208172 80216417 42351 33389 NC_000014.9 scf59 99.99 True fake: scaffold gap size wrong estimation (local) 80197137 80208266 54939 42991 NC_000014.9 scf59 99.7 True fake: scaffold gap size wrong estimation (local) 80190825 80197233 62026 55620 NC_000014.9 scf59 99.94 True fake: scaffold gap size wrong estimation (local) 80190008 80190908 63683 62783 NC_000014.9 scf59 99.78 True indel: indel (<= 5bp) 80189194 80190006 64496 63684 NC_000014.9 scf59 100.0 True local misassembly 80187576 80188985 65906 64497 NC_000014.9 scf59 99.93 True fake: scaffold gap size wrong estimation (local) 80186955 80187575 67574 66954 NC_000014.9 scf59 99.84 True local misassembly 80186128 80186763 68210 67575 NC_000014.9 scf59 100.0 True fake: scaffold gap size wrong estimation (local) 80182241 80186174 73188 69256 NC_000014.9 scf59 99.9 True fake: scaffold gap size wrong estimation (local) 80167039 80182329 89118 73833 NC_000014.9 scf59 99.86 True fake: scaffold gap size wrong estimation (local) 80140641 80167132 116262 89750 NC_000014.9 scf59 99.91 True fake: scaffold gap size wrong estimation (local) 80139283 80140740 118438 116981 NC_000014.9 scf59 99.86 True fake: scaffold gap size wrong estimation (local) 80124917 80139375 133617 119158 NC_000014.9 scf59 99.88 True fake: scaffold gap size wrong estimation (local) 80119951 80125014 139364 134301 NC_000014.9 scf59 99.74 True fake: scaffold gap size wrong estimation (local) 80113455 80120042 146567 139980 NC_000014.9 scf59 99.88 True fake: scaffold gap size wrong estimation (local) 80111650 80113202 149076 147524 NC_000014.9 scf59 99.94 True fake: scaffold gap size wrong estimation (local) 80096771 80111744 164718 149730 NC_000014.9 scf59 99.71 True fake: scaffold gap size wrong estimation (local) 80094486 80096824 167715 165377 NC_000014.9 scf59 99.96 True CONTIG scf59 167715 correct 46017999 46052435 3252 39150 NC_000014.9 scf60 99.58 True indel: indel (<= 5bp) 46052486 46059862 39200 46573 NC_000014.9 scf60 99.8 True fake: scaffold gap size wrong estimation (local) 46060355 46065234 48279 53200 NC_000014.9 scf60 98.64 True fake: scaffold gap size wrong estimation (local) 46066592 46079660 55213 68276 NC_000014.9 scf60 99.85 True fake: scaffold gap size wrong estimation (local) 46079571 46095628 68924 86657 NC_000014.9 scf60 99.12 True CONTIG scf60 86683 correct 36898412 36903463 13 5064 NC_000014.9 scf61 100.0 True fake: scaffold gap size wrong estimation (local) 36903610 36923882 5962 27093 NC_000014.9 scf61 99.64 True fake: scaffold gap size wrong estimation (local) 36924580 36935895 28503 39807 NC_000014.9 scf61 99.67 True fake: scaffold gap size wrong estimation (local) 36935802 36952262 40492 56950 NC_000014.9 scf61 99.9 True fake: scaffold gap size wrong estimation (local) 36952168 36955600 57613 61045 NC_000014.9 scf61 99.94 True fake: scaffold gap size wrong estimation (local) 36955506 36961218 61751 67460 NC_000014.9 scf61 99.72 True fake: scaffold gap size wrong estimation (local) 36961368 36976327 68407 83361 NC_000014.9 scf61 99.89 True fake: scaffold gap size wrong estimation (local) 36976236 36979326 84130 87111 NC_000014.9 scf61 95.52 True fake: scaffold gap size wrong estimation (local) 36979236 36980246 87947 88957 NC_000014.9 scf61 100.0 True fake: scaffold gap size wrong estimation (local) 36981707 36984946 92600 95839 NC_000014.9 scf61 99.81 True fake: scaffold gap size wrong estimation (local) 36985273 36991382 96822 102931 NC_000014.9 scf61 99.92 True fake: scaffold gap size wrong estimation (local) 36991284 36997738 103543 109997 NC_000014.9 scf61 99.77 True fake: scaffold gap size wrong estimation (local) 36997646 37000942 110665 113961 NC_000014.9 scf61 99.82 True fake: scaffold gap size wrong estimation (local) 37000852 37015245 114623 129014 NC_000014.9 scf61 99.91 True fake: scaffold gap size wrong estimation (local) 37016266 37021583 130767 136084 NC_000014.9 scf61 99.81 True fake: scaffold gap size wrong estimation (local) 37021490 37029780 136722 145012 NC_000014.9 scf61 99.9 True fake: scaffold gap size wrong estimation (local) 37029865 37039042 145906 155883 NC_000014.9 scf61 99.74 True fake: scaffold gap size wrong estimation (local) 37039151 37040234 156794 157877 NC_000014.9 scf61 99.91 True fake: scaffold gap size wrong estimation (local) 37040399 37041730 158039 159382 NC_000014.9 scf61 98.74 True fake: scaffold gap size wrong estimation (local) 37041568 37043845 161361 163638 NC_000014.9 scf61 99.87 True fake: scaffold gap size wrong estimation (local) 37043789 37056271 164401 176884 NC_000014.9 scf61 99.92 True fake: scaffold gap size wrong estimation (local) 37056409 37069016 177771 191142 NC_000014.9 scf61 99.84 True fake: scaffold gap size wrong estimation (local) 37068923 37072196 191797 195070 NC_000014.9 scf61 99.97 True fake: scaffold gap size wrong estimation (local) 37072146 37098849 195787 223449 NC_000014.9 scf61 99.08 True fake: scaffold gap size wrong estimation (local) 37098771 37102268 224428 227933 NC_000014.9 scf61 99.74 True fake: scaffold gap size wrong estimation (local) 37102369 37124072 228813 252970 NC_000014.9 scf61 99.07 True fake: scaffold gap size wrong estimation (local) 37124011 37137140 253762 269762 NC_000014.9 scf61 98.71 True fake: scaffold gap size wrong estimation (local) 37137233 37144915 270656 278336 NC_000014.9 scf61 99.93 True fake: scaffold gap size wrong estimation (local) 37144818 37154568 278997 288761 NC_000014.9 scf61 99.67 True fake: scaffold gap size wrong estimation (local) 37154746 37156035 289813 291102 NC_000014.9 scf61 99.69 True local misassembly 37156244 37157318 291103 292177 NC_000014.9 scf61 99.72 True fake: scaffold gap size wrong estimation (local) 37157132 37160697 293587 297213 NC_000014.9 scf61 98.15 True fake: scaffold gap size wrong estimation (local) 37161197 37161980 298625 299408 NC_000014.9 scf61 99.62 True fake: scaffold gap size wrong estimation (local) 37163223 37169607 301444 307828 NC_000014.9 scf61 99.91 True fake: scaffold gap size wrong estimation (local) 37171128 37176627 310690 316195 NC_000014.9 scf61 99.85 True fake: scaffold gap size wrong estimation (local) 37176529 37178622 316911 319002 NC_000014.9 scf61 99.81 True fake: scaffold gap size wrong estimation (local) 37178535 37183788 319918 326026 NC_000014.9 scf61 98.33 True fake: scaffold gap size wrong estimation (local) 37184718 37185224 326761 327267 NC_000014.9 scf61 100.0 True fake: scaffold gap size wrong estimation (local) 37185361 37189446 328390 333338 NC_000014.9 scf61 99.01 True fake: scaffold gap size wrong estimation (local) 37192026 37199770 338258 347154 NC_000014.9 scf61 98.66 True fake: scaffold gap size wrong estimation (local) 37199800 37200692 348500 349392 NC_000014.9 scf61 99.78 True local misassembly 37201297 37202484 349393 350580 NC_000014.9 scf61 100.0 True fake: scaffold gap size wrong estimation (local) 37202389 37203937 351759 353307 NC_000014.9 scf61 100.0 True local misassembly 37204422 37205316 353308 354202 NC_000014.9 scf61 100.0 True fake: scaffold gap size wrong estimation (local) 37205272 37205791 355544 356063 NC_000014.9 scf61 100.0 True local misassembly 37206174 37207642 356064 357532 NC_000014.9 scf61 99.93 True fake: scaffold gap size wrong estimation (local) 37207643 37208711 358858 359926 NC_000014.9 scf61 99.91 True indel: indel (> 5bp) 37208712 37209496 359954 360738 NC_000014.9 scf61 99.87 True fake: scaffold gap size wrong estimation (local) 37209406 37218982 361533 371156 NC_000014.9 scf61 99.41 True fake: scaffold gap size wrong estimation (local) 37218937 37221593 371810 374482 NC_000014.9 scf61 99.33 True fake: scaffold gap size wrong estimation (local) 37221495 37234964 375148 388617 NC_000014.9 scf61 99.95 True relocation, inconsistency = -6800308 30434657 30446664 388618 400623 NC_000014.9 scf61 99.83 True fake: scaffold gap size wrong estimation (local) 30446570 30451910 401292 406632 NC_000014.9 scf61 99.91 True fake: scaffold gap size wrong estimation (local) 30451814 30461534 407296 418214 NC_000014.9 scf61 99.25 True fake: scaffold gap size wrong estimation (local) 30461449 30474485 418918 433443 NC_000014.9 scf61 99.56 True CONTIG scf61 433443 misassembled 48379292 48409580 31088 1 NC_000014.9 scf62 99.72 True fake: scaffold gap size wrong estimation (local) 48377488 48379382 33705 31811 NC_000014.9 scf62 99.95 True fake: scaffold gap size wrong estimation (local) 48370537 48377398 42400 34629 NC_000014.9 scf62 98.92 True CONTIG scf62 42400 correct 70542857 70547385 4529 1 NC_000014.9 scf63 99.89 True fake: scaffold gap size wrong estimation (local) 70539776 70542762 8437 5451 NC_000014.9 scf63 99.97 True fake: scaffold gap size wrong estimation (local) 70537579 70539389 11483 9673 NC_000014.9 scf63 99.89 True fake: scaffold gap size wrong estimation (local) 70533645 70536494 16163 13315 NC_000014.9 scf63 99.86 True fake: scaffold gap size wrong estimation (local) 70507737 70533740 43278 17201 NC_000014.9 scf63 99.62 True CONTIG scf63 43278 correct 48193131 48202734 1 10303 NC_000014.9 scf64 99.97 True fake: scaffold gap size wrong estimation (local) 48202637 48207397 10953 15702 NC_000014.9 scf64 99.68 True fake: scaffold gap size wrong estimation (local) 48207514 48217720 16580 26786 NC_000014.9 scf64 100.0 True fake: scaffold gap size wrong estimation (local) 48217898 48243524 27739 53235 NC_000014.9 scf64 99.45 True fake: scaffold gap size wrong estimation (local) 48243425 48246543 53900 57017 NC_000014.9 scf64 99.97 True fake: scaffold gap size wrong estimation (local) 48246518 48255456 57766 66703 NC_000014.9 scf64 99.97 True fake: scaffold gap size wrong estimation (local) 48255564 48256129 67552 68137 NC_000014.9 scf64 96.59 True fake: scaffold gap size wrong estimation (local) 48256065 48256815 68856 69635 NC_000014.9 scf64 96.28 True local misassembly 48257016 48257523 69704 70211 NC_000014.9 scf64 99.8 True fake: scaffold gap size wrong estimation (local) 48260401 48262663 74875 77137 NC_000014.9 scf64 99.96 True fake: scaffold gap size wrong estimation (local) 48264348 48265059 79563 80274 NC_000014.9 scf64 100.0 True fake: scaffold gap size wrong estimation (local) 48266060 48266855 81280 82075 NC_000014.9 scf64 100.0 True fake: scaffold gap size wrong estimation (local) 48266758 48278799 83155 95279 NC_000014.9 scf64 99.27 True fake: scaffold gap size wrong estimation (local) 48278700 48280293 95966 97573 NC_000014.9 scf64 99.07 True CONTIG scf64 97573 correct 47832170 47836211 4908 1 NC_000014.9 scf65 98.63 True fake: scaffold gap size wrong estimation (local) 47800608 47831622 37904 6150 NC_000014.9 scf65 99.79 True CONTIG scf65 37904 correct 66837523 66864574 1 28824 NC_000014.9 scf66 99.51 True fake: scaffold gap size wrong estimation (local) 66864478 66875660 29487 42047 NC_000014.9 scf66 97.79 True fake: scaffold gap size wrong estimation (local) 66876119 66877262 43444 44587 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 66878151 66893465 46178 62228 NC_000014.9 scf66 99.9 True fake: scaffold gap size wrong estimation (local) 66895105 66920089 65247 90283 NC_000014.9 scf66 99.77 True fake: scaffold gap size wrong estimation (local) 66919996 66927261 91000 98174 NC_000014.9 scf66 98.75 True fake: scaffold gap size wrong estimation (local) 66927168 66929869 98868 101569 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 66929846 66930525 102623 103302 NC_000014.9 scf66 100.0 True local misassembly 66930865 66932444 103346 104925 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 66932445 66934138 106077 107770 NC_000014.9 scf66 100.0 True indel: indel (<= 5bp) 66934140 66936289 107771 109920 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 66936194 66947846 110566 122202 NC_000014.9 scf66 99.2 True fake: scaffold gap size wrong estimation (local) 66947750 66956454 122815 132332 NC_000014.9 scf66 99.18 True fake: scaffold gap size wrong estimation (local) 66957056 66965265 133905 142898 NC_000014.9 scf66 98.67 True fake: scaffold gap size wrong estimation (local) 66965202 66975649 143698 155622 NC_000014.9 scf66 97.55 True fake: scaffold gap size wrong estimation (local) 66975550 66977454 156456 158360 NC_000014.9 scf66 99.95 True fake: scaffold gap size wrong estimation (local) 66977359 66991695 159058 174168 NC_000014.9 scf66 99.76 True fake: scaffold gap size wrong estimation (local) 66991847 66997223 175036 180412 NC_000014.9 scf66 99.98 True fake: scaffold gap size wrong estimation (local) 66997130 67026735 181061 214578 NC_000014.9 scf66 99.26 True fake: scaffold gap size wrong estimation (local) 67026864 67027473 215618 216227 NC_000014.9 scf66 100.0 True local misassembly 67027704 67036623 216251 225944 NC_000014.9 scf66 99.59 True fake: scaffold gap size wrong estimation (local) 67036526 67042163 226584 232221 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 67042346 67047363 233615 239803 NC_000014.9 scf66 99.17 True fake: scaffold gap size wrong estimation (local) 67047373 67049314 240675 242616 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 67049561 67053272 243670 247403 NC_000014.9 scf66 99.41 True fake: scaffold gap size wrong estimation (local) 67053430 67056332 248227 250990 NC_000014.9 scf66 95.21 True fake: scaffold gap size wrong estimation (local) 67056772 67061195 252273 256696 NC_000014.9 scf66 100.0 True fake: scaffold gap size wrong estimation (local) 67061142 67062997 257460 259317 NC_000014.9 scf66 99.84 True CONTIG scf66 259317 correct 29781156 29782771 2907 4522 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29782677 29801748 5264 25777 NC_000014.9 scf67 99.92 True fake: scaffold gap size wrong estimation (local) 29801884 29813142 26710 38745 NC_000014.9 scf67 99.58 True fake: scaffold gap size wrong estimation (local) 29813043 29826383 39399 52735 NC_000014.9 scf67 99.87 True fake: scaffold gap size wrong estimation (local) 29826871 29831466 53710 58305 NC_000014.9 scf67 99.93 True fake: scaffold gap size wrong estimation (local) 29831382 29841258 58983 69657 NC_000014.9 scf67 99.75 True fake: scaffold gap size wrong estimation (local) 29841160 29843486 70376 72702 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29843389 29850474 73394 80479 NC_000014.9 scf67 99.96 True fake: scaffold gap size wrong estimation (local) 29850384 29857777 81121 88514 NC_000014.9 scf67 99.99 True fake: scaffold gap size wrong estimation (local) 29857678 29859457 89242 91021 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29859370 29867266 91711 99607 NC_000014.9 scf67 99.99 True fake: scaffold gap size wrong estimation (local) 29867168 29872649 100288 105769 NC_000014.9 scf67 99.98 True fake: scaffold gap size wrong estimation (local) 29872636 29873234 107153 107752 NC_000014.9 scf67 99.83 True fake: scaffold gap size wrong estimation (local) 29873235 29880171 108723 116323 NC_000014.9 scf67 97.25 True fake: scaffold gap size wrong estimation (local) 29880077 29880744 117062 117729 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29880745 29882128 117856 119239 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29882989 29885083 121261 123355 NC_000014.9 scf67 99.95 True fake: scaffold gap size wrong estimation (local) 29885829 29895310 125005 134485 NC_000014.9 scf67 99.92 True fake: scaffold gap size wrong estimation (local) 29895212 29896775 135156 136723 NC_000014.9 scf67 99.74 True fake: scaffold gap size wrong estimation (local) 29896723 29900802 137500 141579 NC_000014.9 scf67 99.98 True fake: scaffold gap size wrong estimation (local) 29900705 29915066 142265 158206 NC_000014.9 scf67 99.75 True fake: scaffold gap size wrong estimation (local) 29914968 29927142 158914 171818 NC_000014.9 scf67 99.11 True fake: scaffold gap size wrong estimation (local) 29928097 29936226 173536 182358 NC_000014.9 scf67 99.99 True fake: scaffold gap size wrong estimation (local) 29936328 29942085 183179 188936 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29941986 29945941 189635 193590 NC_000014.9 scf67 100.0 True fake: scaffold gap size wrong estimation (local) 29946108 29951661 194478 200031 NC_000014.9 scf67 99.98 True fake: scaffold gap size wrong estimation (local) 29951913 29955786 201021 204894 NC_000014.9 scf67 99.97 True fake: scaffold gap size wrong estimation (local) 29957415 29957986 208796 209367 NC_000014.9 scf67 99.83 True fake: scaffold gap size wrong estimation (local) 29959904 29960982 212099 213232 NC_000014.9 scf67 95.06 True fake: scaffold gap size wrong estimation (local) 29960885 29967994 214060 221959 NC_000014.9 scf67 99.19 True fake: scaffold gap size wrong estimation (local) 29968171 29973895 222925 228649 NC_000014.9 scf67 99.91 True fake: scaffold gap size wrong estimation (local) 29973809 29974906 229416 230513 NC_000014.9 scf67 99.73 True indel: indel (> 5bp) 29974907 29975495 230576 231164 NC_000014.9 scf67 99.83 True local misassembly 29975628 29976698 231165 232235 NC_000014.9 scf67 99.72 True fake: scaffold gap size wrong estimation (local) 29976606 29977837 233007 234237 NC_000014.9 scf67 96.64 True fake: scaffold gap size wrong estimation (local) 29978080 29987393 235420 244726 NC_000014.9 scf67 99.84 True fake: scaffold gap size wrong estimation (local) 29987303 30008053 245377 266095 NC_000014.9 scf67 99.6 True fake: scaffold gap size wrong estimation (local) 30008263 30015028 267059 273824 NC_000014.9 scf67 99.9 True fake: scaffold gap size wrong estimation (local) 30014937 30023401 274448 282913 NC_000014.9 scf67 99.86 True fake: scaffold gap size wrong estimation (local) 30023305 30028176 283567 288439 NC_000014.9 scf67 99.86 True fake: scaffold gap size wrong estimation (local) 30028082 30041891 289092 302902 NC_000014.9 scf67 99.87 True fake: scaffold gap size wrong estimation (local) 30041834 30044178 303657 306002 NC_000014.9 scf67 99.66 True fake: scaffold gap size wrong estimation (local) 30044088 30052011 306714 314638 NC_000014.9 scf67 99.82 True fake: scaffold gap size wrong estimation (local) 30051960 30055404 315381 318824 NC_000014.9 scf67 99.91 True fake: scaffold gap size wrong estimation (local) 30055333 30065119 319523 329307 NC_000014.9 scf67 99.94 True fake: scaffold gap size wrong estimation (local) 30066607 30068247 331518 333158 NC_000014.9 scf67 99.88 True fake: scaffold gap size wrong estimation (local) 30068160 30073409 334801 340050 NC_000014.9 scf67 99.98 True fake: scaffold gap size wrong estimation (local) 30073317 30098076 340700 365369 NC_000014.9 scf67 99.45 True fake: scaffold gap size wrong estimation (local) 30097993 30098936 366018 366961 NC_000014.9 scf67 99.89 True fake: scaffold gap size wrong estimation (local) 30098937 30099737 367075 367875 NC_000014.9 scf67 99.88 True local misassembly 30100037 30100754 368003 368720 NC_000014.9 scf67 99.86 True fake: scaffold gap size wrong estimation (local) 30100755 30101457 369591 370293 NC_000014.9 scf67 99.43 True fake: scaffold gap size wrong estimation (local) 30103212 30107525 373317 377630 NC_000014.9 scf67 99.88 True fake: scaffold gap size wrong estimation (local) 30108658 30111935 379480 382757 NC_000014.9 scf67 99.94 True fake: scaffold gap size wrong estimation (local) 30111837 30119050 383430 391432 NC_000014.9 scf67 99.86 True fake: scaffold gap size wrong estimation (local) 30119426 30124205 392532 398134 NC_000014.9 scf67 98.86 True fake: scaffold gap size wrong estimation (local) 30124116 30136893 398840 412062 NC_000014.9 scf67 99.25 True fake: scaffold gap size wrong estimation (local) 30136798 30147724 412906 424587 NC_000014.9 scf67 98.83 True fake: scaffold gap size wrong estimation (local) 30147644 30152842 425188 430397 NC_000014.9 scf67 99.67 True fake: scaffold gap size wrong estimation (local) 30152773 30164219 431018 442468 NC_000014.9 scf67 99.87 True fake: scaffold gap size wrong estimation (local) 30164125 30173581 443137 452597 NC_000014.9 scf67 99.85 True CONTIG scf67 452597 correct 100991097 101006801 15252 1 NC_000014.9 scf68 97.05 True fake: scaffold gap size wrong estimation (local) 100988431 100990952 18890 16369 NC_000014.9 scf68 99.84 True fake: scaffold gap size wrong estimation (local) 100985240 100988526 22870 19584 NC_000014.9 scf68 99.82 True fake: scaffold gap size wrong estimation (local) 100978014 100985092 30858 23763 NC_000014.9 scf68 99.65 True fake: scaffold gap size wrong estimation (local) 100977178 100977813 32750 32115 NC_000014.9 scf68 100.0 True local misassembly 100976007 100976738 33537 32806 NC_000014.9 scf68 99.59 True fake: scaffold gap size wrong estimation (local) 100957566 100975898 53835 34757 NC_000014.9 scf68 99.75 True fake: scaffold gap size wrong estimation (local) 100953182 100957662 61137 55834 NC_000014.9 scf68 98.35 True fake: scaffold gap size wrong estimation (local) 100931958 100952910 82341 61378 NC_000014.9 scf68 99.79 True fake: scaffold gap size wrong estimation (local) 100922376 100931680 92692 83387 NC_000014.9 scf68 99.9 True fake: scaffold gap size wrong estimation (local) 100916708 100922469 99894 93367 NC_000014.9 scf68 99.58 True fake: scaffold gap size wrong estimation (local) 100899136 100916804 119127 100615 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100887548 100899216 132241 119758 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100873456 100887638 147082 132901 NC_000014.9 scf68 99.95 True fake: scaffold gap size wrong estimation (local) 100870249 100873343 152592 149498 NC_000014.9 scf68 99.97 True fake: scaffold gap size wrong estimation (local) 100843835 100868407 178775 154201 NC_000014.9 scf68 99.97 True fake: scaffold gap size wrong estimation (local) 100833503 100843902 189906 179509 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100830341 100833384 193861 190815 NC_000014.9 scf68 99.84 True fake: scaffold gap size wrong estimation (local) 100819487 100830431 205484 194540 NC_000014.9 scf68 99.95 True fake: scaffold gap size wrong estimation (local) 100813234 100819573 214334 206985 NC_000014.9 scf68 99.33 True fake: scaffold gap size wrong estimation (local) 100807201 100812549 221987 215822 NC_000014.9 scf68 99.92 True fake: scaffold gap size wrong estimation (local) 100798078 100806848 232548 223083 NC_000014.9 scf68 99.79 True fake: scaffold gap size wrong estimation (local) 100796577 100797848 235446 234147 NC_000014.9 scf68 97.69 True fake: scaffold gap size wrong estimation (local) 100794181 100795947 238863 237097 NC_000014.9 scf68 99.94 True fake: scaffold gap size wrong estimation (local) 100783193 100793806 250704 240091 NC_000014.9 scf68 99.99 True fake: scaffold gap size wrong estimation (local) 100760834 100783266 275579 251525 NC_000014.9 scf68 99.92 True fake: scaffold gap size wrong estimation (local) 100752183 100760923 286408 276342 NC_000014.9 scf68 95.62 True fake: scaffold gap size wrong estimation (local) 100750016 100752260 289453 287209 NC_000014.9 scf68 99.73 True fake: scaffold gap size wrong estimation (local) 100748391 100749502 292014 290903 NC_000014.9 scf68 99.64 True fake: scaffold gap size wrong estimation (local) 100746768 100747620 293533 292681 NC_000014.9 scf68 99.77 True fake: scaffold gap size wrong estimation (local) 100726908 100746780 315084 294453 NC_000014.9 scf68 99.76 True fake: scaffold gap size wrong estimation (local) 100715798 100726815 326990 315974 NC_000014.9 scf68 99.79 True fake: scaffold gap size wrong estimation (local) 100713321 100715895 330217 327635 NC_000014.9 scf68 99.65 True fake: scaffold gap size wrong estimation (local) 100710350 100713358 334040 331032 NC_000014.9 scf68 99.8 True fake: scaffold gap size wrong estimation (local) 100707637 100710412 337546 334778 NC_000014.9 scf68 99.6 True fake: scaffold gap size wrong estimation (local) 100706057 100707554 340011 338514 NC_000014.9 scf68 99.8 True local misassembly 100704042 100705856 341826 340012 NC_000014.9 scf68 99.78 True fake: scaffold gap size wrong estimation (local) 100699866 100704141 346805 342530 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100697338 100699680 350155 347813 NC_000014.9 scf68 99.87 True fake: scaffold gap size wrong estimation (local) 100694126 100697419 354190 350897 NC_000014.9 scf68 99.94 True fake: scaffold gap size wrong estimation (local) 100690049 100694213 359062 354898 NC_000014.9 scf68 99.93 True fake: scaffold gap size wrong estimation (local) 100687916 100689841 362009 360092 NC_000014.9 scf68 98.4 True fake: scaffold gap size wrong estimation (local) 100686766 100687987 365526 364279 NC_000014.9 scf68 97.84 True fake: scaffold gap size wrong estimation (local) 100683516 100685069 371748 370195 NC_000014.9 scf68 100.0 True local misassembly 100682505 100683111 372355 371749 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100662504 100682599 394423 373578 NC_000014.9 scf68 99.38 True fake: scaffold gap size wrong estimation (local) 100650093 100662352 408365 395323 NC_000014.9 scf68 99.56 True fake: scaffold gap size wrong estimation (local) 100646313 100650187 414349 409072 NC_000014.9 scf68 98.27 True fake: scaffold gap size wrong estimation (local) 100644284 100646411 417303 415176 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100642854 100644283 419748 418319 NC_000014.9 scf68 99.86 True local misassembly 100641403 100642565 420911 419749 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100632465 100641161 431729 422281 NC_000014.9 scf68 99.62 True fake: scaffold gap size wrong estimation (local) 100627477 100631861 437387 433003 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100624896 100627563 440720 438053 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100617446 100624993 449815 441464 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100611679 100617508 457546 450578 NC_000014.9 scf68 95.92 True fake: scaffold gap size wrong estimation (local) 100604106 100611480 466206 458832 NC_000014.9 scf68 99.95 True fake: scaffold gap size wrong estimation (local) 100601806 100604204 469307 466909 NC_000014.9 scf68 99.96 True local misassembly 100600585 100601562 470285 469308 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100595418 100600562 477042 471256 NC_000014.9 scf68 95.21 True fake: scaffold gap size wrong estimation (local) 100593202 100595497 480243 477949 NC_000014.9 scf68 99.78 True fake: scaffold gap size wrong estimation (local) 100587506 100593266 486792 481039 NC_000014.9 scf68 99.86 True fake: scaffold gap size wrong estimation (local) 100580215 100587194 495605 487889 NC_000014.9 scf68 99.68 True fake: scaffold gap size wrong estimation (local) 100574523 100580077 502867 496350 NC_000014.9 scf68 99.48 True fake: scaffold gap size wrong estimation (local) 100557140 100574616 521863 503566 NC_000014.9 scf68 99.41 True fake: scaffold gap size wrong estimation (local) 100546764 100557098 533024 522692 NC_000014.9 scf68 99.88 True fake: scaffold gap size wrong estimation (local) 100539901 100546359 540701 534243 NC_000014.9 scf68 99.89 True fake: scaffold gap size wrong estimation (local) 100526935 100539997 554380 541429 NC_000014.9 scf68 99.05 True fake: scaffold gap size wrong estimation (local) 100520097 100526906 563953 556287 NC_000014.9 scf68 98.77 True fake: scaffold gap size wrong estimation (local) 100514112 100520194 572111 565145 NC_000014.9 scf68 98.3 True fake: scaffold gap size wrong estimation (local) 100510513 100514020 576665 573158 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100495052 100510282 593712 577643 NC_000014.9 scf68 99.13 True fake: scaffold gap size wrong estimation (local) 100484386 100495142 605144 594389 NC_000014.9 scf68 99.95 True fake: scaffold gap size wrong estimation (local) 100481473 100484478 608879 605874 NC_000014.9 scf68 99.97 True fake: scaffold gap size wrong estimation (local) 100464588 100481192 626502 609904 NC_000014.9 scf68 99.93 True fake: scaffold gap size wrong estimation (local) 100460239 100464684 631591 627149 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100456250 100459912 636347 632685 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100448197 100456349 645153 637002 NC_000014.9 scf68 99.99 True fake: scaffold gap size wrong estimation (local) 100433982 100448020 660114 646083 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100431940 100434077 662998 660861 NC_000014.9 scf68 99.91 True fake: scaffold gap size wrong estimation (local) 100419224 100431594 676501 664129 NC_000014.9 scf68 99.94 True fake: scaffold gap size wrong estimation (local) 100414560 100418001 683564 679284 NC_000014.9 scf68 99.34 True fake: scaffold gap size wrong estimation (local) 100405371 100414287 693394 683881 NC_000014.9 scf68 96.74 True fake: scaffold gap size wrong estimation (local) 100396203 100405178 704153 694357 NC_000014.9 scf68 99.98 True fake: scaffold gap size wrong estimation (local) 100371452 100396052 732331 705092 NC_000014.9 scf68 97.81 True fake: scaffold gap size wrong estimation (local) 100368789 100371281 735773 733301 NC_000014.9 scf68 98.92 True fake: scaffold gap size wrong estimation (local) 100363655 100368858 741699 736632 NC_000014.9 scf68 96.16 True fake: scaffold gap size wrong estimation (local) 100352109 100363730 755582 742538 NC_000014.9 scf68 97.14 True fake: scaffold gap size wrong estimation (local) 100345586 100351782 764686 756979 NC_000014.9 scf68 95.99 True fake: scaffold gap size wrong estimation (local) 100340918 100343945 770123 767075 NC_000014.9 scf68 98.89 True fake: scaffold gap size wrong estimation (local) 100339591 100340917 772811 771485 NC_000014.9 scf68 99.85 True fake: scaffold gap size wrong estimation (local) 100336288 100338648 776942 774582 NC_000014.9 scf68 99.7 True fake: scaffold gap size wrong estimation (local) 100326926 100336191 787137 777027 NC_000014.9 scf68 99.79 True fake: scaffold gap size wrong estimation (local) 100324369 100327015 790488 787842 NC_000014.9 scf68 99.89 True fake: scaffold gap size wrong estimation (local) 100319845 100324463 796580 791154 NC_000014.9 scf68 99.93 True fake: scaffold gap size wrong estimation (local) 100318817 100319711 797647 796753 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100315814 100318912 803088 798368 NC_000014.9 scf68 97.97 True fake: scaffold gap size wrong estimation (local) 100311274 100314631 808471 805113 NC_000014.9 scf68 99.88 True fake: scaffold gap size wrong estimation (local) 100310725 100311267 809906 809364 NC_000014.9 scf68 100.0 True local misassembly 100308961 100310273 811558 810246 NC_000014.9 scf68 100.0 True fake: scaffold gap size wrong estimation (local) 100305205 100308610 816156 812751 NC_000014.9 scf68 99.97 True fake: scaffold gap size wrong estimation (local) 100302349 100305302 819771 816819 NC_000014.9 scf68 99.93 True fake: scaffold gap size wrong estimation (local) 100300948 100302232 822483 821157 NC_000014.9 scf68 96.46 True fake: scaffold gap size wrong estimation (local) 100296680 100300161 827661 824180 NC_000014.9 scf68 99.86 True fake: scaffold gap size wrong estimation (local) 100288106 100296750 837837 828418 NC_000014.9 scf68 99.13 True CONTIG scf68 837933 correct 61584133 61595956 1 11831 NC_000014.9 scf69 99.76 True fake: scaffold gap size wrong estimation (local) 61596118 61601165 12653 17713 NC_000014.9 scf69 99.45 True fake: scaffold gap size wrong estimation (local) 61601471 61603603 18781 20913 NC_000014.9 scf69 99.77 True fake: scaffold gap size wrong estimation (local) 61603747 61607117 21926 25296 NC_000014.9 scf69 99.97 True fake: scaffold gap size wrong estimation (local) 61607022 61611566 25954 30506 NC_000014.9 scf69 99.65 True fake: scaffold gap size wrong estimation (local) 61611471 61618575 31146 38254 NC_000014.9 scf69 99.8 True fake: scaffold gap size wrong estimation (local) 61618484 61621304 38952 41776 NC_000014.9 scf69 99.79 True fake: scaffold gap size wrong estimation (local) 61621220 61633664 42527 56427 NC_000014.9 scf69 99.52 True fake: scaffold gap size wrong estimation (local) 61633868 61639567 57393 63089 NC_000014.9 scf69 99.88 True fake: scaffold gap size wrong estimation (local) 61639686 61646622 64012 70947 NC_000014.9 scf69 99.86 True fake: scaffold gap size wrong estimation (local) 61646525 61655143 71631 81333 NC_000014.9 scf69 98.86 True fake: scaffold gap size wrong estimation (local) 61655062 61657795 82043 84776 NC_000014.9 scf69 99.85 True fake: scaffold gap size wrong estimation (local) 61658553 61661288 86234 88968 NC_000014.9 scf69 99.89 True fake: scaffold gap size wrong estimation (local) 61661200 61663429 89807 92036 NC_000014.9 scf69 99.96 True fake: scaffold gap size wrong estimation (local) 61663334 61665172 93271 95109 NC_000014.9 scf69 99.95 True local misassembly 61665775 61666712 95144 96081 NC_000014.9 scf69 100.0 True fake: scaffold gap size wrong estimation (local) 61666713 61669790 96909 99986 NC_000014.9 scf69 99.81 True fake: scaffold gap size wrong estimation (local) 61670195 61672460 101214 103479 NC_000014.9 scf69 99.69 True fake: scaffold gap size wrong estimation (local) 61672728 61680374 104553 112201 NC_000014.9 scf69 99.88 True fake: scaffold gap size wrong estimation (local) 61680278 61686308 112901 118949 NC_000014.9 scf69 99.62 True fake: scaffold gap size wrong estimation (local) 61686211 61688299 119562 121650 NC_000014.9 scf69 99.81 True indel: indel (<= 5bp) 61688300 61689787 121653 123140 NC_000014.9 scf69 99.93 True local misassembly 61692274 61699459 123141 130326 NC_000014.9 scf69 99.93 True indel: indel (<= 5bp) 61699461 61701757 130327 132623 NC_000014.9 scf69 99.96 True fake: scaffold gap size wrong estimation (local) 61702523 61707412 134049 138948 NC_000014.9 scf69 99.73 True fake: scaffold gap size wrong estimation (local) 61709092 61714623 141329 146855 NC_000014.9 scf69 99.84 True fake: scaffold gap size wrong estimation (local) 61714893 61725491 147847 159160 NC_000014.9 scf69 99.11 True fake: scaffold gap size wrong estimation (local) 61725429 61737840 163243 177274 NC_000014.9 scf69 99.44 True fake: scaffold gap size wrong estimation (local) 61737942 61740085 178153 180296 NC_000014.9 scf69 99.91 True fake: scaffold gap size wrong estimation (local) 61740181 61741699 181284 182802 NC_000014.9 scf69 99.8 True local misassembly 61741916 61742706 182803 183593 NC_000014.9 scf69 99.75 True fake: scaffold gap size wrong estimation (local) 61743246 61744290 185587 186631 NC_000014.9 scf69 99.9 True local misassembly 61744972 61746096 186632 187756 NC_000014.9 scf69 99.91 True fake: scaffold gap size wrong estimation (local) 61746325 61755288 189436 198401 NC_000014.9 scf69 99.83 True fake: scaffold gap size wrong estimation (local) 61755426 61759028 199361 203847 NC_000014.9 scf69 95.45 True fake: not a misassembly (possible transposable element) 96168332 96171241 203848 206757 NC_000014.9 scf69 99.7 True fake: not a misassembly (possible transposable element) 61762297 61762998 206758 207459 NC_000014.9 scf69 99.57 True fake: not a misassembly (possible transposable element) 96171143 96172620 207528 209005 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 61763815 61767558 209006 212749 NC_000014.9 scf69 99.89 True relocation, scaffold gap is present, inconsistency = 34407199 96175690 96176399 213682 214391 NC_000014.9 scf69 99.86 True local misassembly 96177608 96184498 215479 222369 NC_000014.9 scf69 99.87 True fake: scaffold gap size wrong estimation (local) 96184406 96191121 223047 229762 NC_000014.9 scf69 99.91 True fake: not a misassembly (possible transposable element) 61779171 61779746 229781 230356 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 96191076 96195576 230489 234990 NC_000014.9 scf69 99.8 True fake: not a misassembly (possible transposable element) 61783602 61786267 235660 238325 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 96198133 96200048 238326 240241 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 61787630 61789066 240420 241856 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 96200885 96213610 241857 254580 NC_000014.9 scf69 99.9 True fake: not a misassembly (possible transposable element) 61798529 61799624 254581 255655 NC_000014.9 scf69 98.08 True fake: not a misassembly (possible transposable element) 96213927 96216731 255656 258460 NC_000014.9 scf69 99.93 True relocation, inconsistency = -34415059 61801673 61810655 258461 267443 NC_000014.9 scf69 99.93 True fake: not a misassembly (possible transposable element) 96223328 96226548 267472 270692 NC_000014.9 scf69 100.0 True fake: not a misassembly (possible transposable element) 61813011 61813819 270693 271519 NC_000014.9 scf69 97.71 True relocation, inconsistency = 34412813 96226633 96229952 271520 274838 NC_000014.9 scf69 99.88 True fake: scaffold gap size wrong estimation (local) 96230059 96230905 275919 276781 NC_000014.9 scf69 98.03 True relocation, inconsistency = -34413330 61817576 61818571 276782 277777 NC_000014.9 scf69 99.1 True local misassembly 61818740 61820483 277778 279521 NC_000014.9 scf69 99.94 True fake: not a misassembly (possible transposable element) 96232489 96235299 279522 282332 NC_000014.9 scf69 99.96 True fake: not a misassembly (possible transposable element) 61822440 61824176 282333 284220 NC_000014.9 scf69 96.49 True fake: scaffold gap size wrong estimation (local) 61824499 61832389 285673 295202 NC_000014.9 scf69 99.64 True fake: scaffold gap size wrong estimation (local) 61832202 61834329 296102 298252 NC_000014.9 scf69 98.7 True fake: scaffold gap size wrong estimation (local) 61834550 61835442 298438 299322 NC_000014.9 scf69 99.1 True fake: scaffold gap size wrong estimation (local) 61835354 61839080 300091 303848 NC_000014.9 scf69 99.07 True fake: scaffold gap size wrong estimation (local) 61838990 61841244 304516 306770 NC_000014.9 scf69 99.73 True fake: scaffold gap size wrong estimation (local) 61841147 61842658 307548 309059 NC_000014.9 scf69 100.0 True fake: scaffold gap size wrong estimation (local) 61842976 61845063 310178 312265 NC_000014.9 scf69 99.9 True fake: scaffold gap size wrong estimation (local) 61845276 61851423 313325 319863 NC_000014.9 scf69 98.67 True fake: scaffold gap size wrong estimation (local) 61851337 61858893 320704 327935 NC_000014.9 scf69 95.67 True fake: scaffold gap size wrong estimation (local) 61859031 61883571 329154 353694 NC_000014.9 scf69 99.98 True fake: scaffold gap size wrong estimation (local) 61883486 61885477 354473 356464 NC_000014.9 scf69 99.9 True fake: scaffold gap size wrong estimation (local) 61886159 61886891 358344 359076 NC_000014.9 scf69 100.0 True local misassembly 61887415 61888125 359077 359787 NC_000014.9 scf69 100.0 True fake: scaffold gap size wrong estimation (local) 61888218 61891272 361267 364321 NC_000014.9 scf69 99.8 True fake: scaffold gap size wrong estimation (local) 61891188 61901842 365067 376532 NC_000014.9 scf69 99.61 True fake: scaffold gap size wrong estimation (local) 61901751 61905851 377320 381416 NC_000014.9 scf69 99.56 True fake: scaffold gap size wrong estimation (local) 61905989 61914248 382340 391343 NC_000014.9 scf69 99.28 True fake: scaffold gap size wrong estimation (local) 61914155 61935818 392071 414560 NC_000014.9 scf69 99.7 True fake: scaffold gap size wrong estimation (local) 61935721 61939087 415299 418986 NC_000014.9 scf69 96.64 True fake: scaffold gap size wrong estimation (local) 61939004 61942935 419929 423860 NC_000014.9 scf69 99.97 True fake: scaffold gap size wrong estimation (local) 61943146 61943955 424838 425647 NC_000014.9 scf69 99.88 True fake: scaffold gap size wrong estimation (local) 61944439 61945053 426234 426848 NC_000014.9 scf69 100.0 True fake: scaffold gap size wrong estimation (local) 61945857 61951708 428298 435028 NC_000014.9 scf69 98.88 True fake: scaffold gap size wrong estimation (local) 61951617 61962054 435649 446086 NC_000014.9 scf69 99.95 True fake: scaffold gap size wrong estimation (local) 61961955 61971465 446735 456982 NC_000014.9 scf69 99.23 True fake: scaffold gap size wrong estimation (local) 61971375 61979672 457649 465946 NC_000014.9 scf69 99.95 True fake: scaffold gap size wrong estimation (local) 61979585 61989496 466638 477273 NC_000014.9 scf69 98.46 True fake: scaffold gap size wrong estimation (local) 61989406 62002448 478156 492786 NC_000014.9 scf69 99.1 True fake: scaffold gap size wrong estimation (local) 62002377 62011925 493465 503013 NC_000014.9 scf69 99.96 True fake: scaffold gap size wrong estimation (local) 62011868 62016458 503708 508298 NC_000014.9 scf69 99.98 True fake: scaffold gap size wrong estimation (local) 62016559 62018079 509146 510666 NC_000014.9 scf69 99.74 True fake: scaffold gap size wrong estimation (local) 62018492 62037262 511909 530680 NC_000014.9 scf69 99.9 True fake: scaffold gap size wrong estimation (local) 62037170 62042250 531357 537295 NC_000014.9 scf69 96.63 True fake: scaffold gap size wrong estimation (local) 62042153 62044477 538046 540456 NC_000014.9 scf69 98.22 True CONTIG scf69 540456 misassembled 54863500 54871197 8441 1 NC_000014.9 scf70 95.26 True fake: scaffold gap size wrong estimation (local) 54862615 54863228 10227 9614 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 54861673 54862361 11109 10421 NC_000014.9 scf70 99.85 True local misassembly 54860580 54861445 11975 11110 NC_000014.9 scf70 99.88 True fake: scaffold gap size wrong estimation (local) 54855699 54860558 18182 13323 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 54853060 54855518 21641 19183 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 54852042 54853151 23690 22581 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 54845365 54850233 31062 26194 NC_000014.9 scf70 99.96 True fake: scaffold gap size wrong estimation (local) 54837398 54845164 40509 32015 NC_000014.9 scf70 99.18 True fake: scaffold gap size wrong estimation (local) 54831693 54836905 47054 41842 NC_000014.9 scf70 99.96 True fake: scaffold gap size wrong estimation (local) 54826440 54831775 53879 47749 NC_000014.9 scf70 98.88 True fake: scaffold gap size wrong estimation (local) 54810438 54824728 71304 56239 NC_000014.9 scf70 99.7 True fake: scaffold gap size wrong estimation (local) 54795971 54810536 87258 71938 NC_000014.9 scf70 99.34 True fake: scaffold gap size wrong estimation (local) 54779684 54796029 105180 88032 NC_000014.9 scf70 99.87 True fake: scaffold gap size wrong estimation (local) 54776863 54779748 108764 105880 NC_000014.9 scf70 99.86 True fake: scaffold gap size wrong estimation (local) 54774840 54776954 111662 109552 NC_000014.9 scf70 99.72 True fake: scaffold gap size wrong estimation (local) 54765461 54774501 121843 112804 NC_000014.9 scf70 99.86 True fake: scaffold gap size wrong estimation (local) 54758812 54765492 130073 122619 NC_000014.9 scf70 98.84 True fake: scaffold gap size wrong estimation (local) 54757342 54758903 133280 131722 NC_000014.9 scf70 99.81 True fake: scaffold gap size wrong estimation (local) 54753475 54757422 138111 134164 NC_000014.9 scf70 99.87 True fake: scaffold gap size wrong estimation (local) 54751010 54753136 141362 139236 NC_000014.9 scf70 99.76 True fake: scaffold gap size wrong estimation (local) 54740105 54751102 153083 142086 NC_000014.9 scf70 99.86 True fake: scaffold gap size wrong estimation (local) 54739056 54740198 154978 153837 NC_000014.9 scf70 99.83 True indel: indel (> 5bp) 54737485 54738970 156510 155011 NC_000014.9 scf70 98.8 True fake: scaffold gap size wrong estimation (local) 54723957 54737561 171443 157146 NC_000014.9 scf70 99.68 True fake: scaffold gap size wrong estimation (local) 54707243 54724024 189660 172126 NC_000014.9 scf70 99.56 True fake: scaffold gap size wrong estimation (local) 54706618 54707333 191021 190306 NC_000014.9 scf70 99.86 True fake: scaffold gap size wrong estimation (local) 54695955 54706402 201726 191281 NC_000014.9 scf70 99.74 True fake: scaffold gap size wrong estimation (local) 54691631 54695753 206815 202691 NC_000014.9 scf70 99.88 True fake: scaffold gap size wrong estimation (local) 54687532 54691257 212392 207957 NC_000014.9 scf70 99.38 True fake: scaffold gap size wrong estimation (local) 54678774 54687782 222134 213124 NC_000014.9 scf70 99.81 True fake: scaffold gap size wrong estimation (local) 54676479 54678472 225229 223236 NC_000014.9 scf70 100.0 True relocation, inconsistency = 8114379 46553152 46562099 225230 234178 NC_000014.9 scf70 99.93 True fake: not a misassembly (possible transposable element) 54664811 54669483 239251 234577 NC_000014.9 scf70 99.89 True fake: not a misassembly (possible transposable element) 46565501 46567325 239252 241076 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 54662437 54663800 242442 241079 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46567921 46577680 242443 252204 NC_000014.9 scf70 99.91 True fake: not a misassembly (possible transposable element) 54653246 54654094 253077 252244 NC_000014.9 scf70 98.24 True fake: not a misassembly (possible transposable element) 46577813 46582190 253078 257455 NC_000014.9 scf70 99.89 True relocation, inconsistency = 8057541 54639746 54649679 267408 257470 NC_000014.9 scf70 99.94 True relocation, inconsistency = 8045123 46589046 46594622 267409 272986 NC_000014.9 scf70 99.89 True fake: scaffold gap size wrong estimation (local) 46594528 46605650 273597 284702 NC_000014.9 scf70 99.7 True fake: scaffold gap size wrong estimation (local) 46605557 46606805 285487 286734 NC_000014.9 scf70 99.76 True local misassembly 46608055 46609218 287836 288999 NC_000014.9 scf70 99.83 True fake: not a misassembly (possible transposable element) 54621712 54623215 291006 289503 NC_000014.9 scf70 99.8 True fake: not a misassembly (possible transposable element) 46610470 46615453 291018 295999 NC_000014.9 scf70 99.94 True fake: not a misassembly (possible transposable element) 54613074 54617459 300404 296015 NC_000014.9 scf70 99.79 True fake: not a misassembly (possible transposable element) 46618790 46622079 300684 303968 NC_000014.9 scf70 99.79 True fake: not a misassembly (possible transposable element) 54608012 54610294 306251 303969 NC_000014.9 scf70 99.82 True fake: not a misassembly (possible transposable element) 46623612 46640707 306265 323365 NC_000014.9 scf70 99.69 True fake: not a misassembly (possible transposable element) 54592516 54594621 325471 323366 NC_000014.9 scf70 99.91 True fake: not a misassembly (possible transposable element) 46642083 46648747 325472 332133 NC_000014.9 scf70 99.8 True fake: not a misassembly (possible transposable element) 54582997 54586478 336432 332951 NC_000014.9 scf70 99.83 True fake: not a misassembly (possible transposable element) 46652298 46663341 336433 347482 NC_000014.9 scf70 99.86 True fake: not a misassembly (possible transposable element) 54568738 54574138 352884 347485 NC_000014.9 scf70 99.91 True fake: not a misassembly (possible transposable element) 46668044 46677502 352885 362343 NC_000014.9 scf70 99.84 True fake: not a misassembly (possible transposable element) 54553974 54560866 369238 362344 NC_000014.9 scf70 99.8 True fake: not a misassembly (possible transposable element) 46682978 46685836 369239 372097 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 54548780 54551777 375095 372098 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46688123 46692956 375101 379950 NC_000014.9 scf70 99.65 True fake: not a misassembly (possible transposable element) 54545036 54545790 380705 379951 NC_000014.9 scf70 99.87 True fake: not a misassembly (possible transposable element) 46692930 46695827 380706 383603 NC_000014.9 scf70 99.9 True relocation, inconsistency = 7839545 54535373 54544097 392332 383604 NC_000014.9 scf70 99.95 True relocation, inconsistency = 7825252 46702371 46710120 392333 400083 NC_000014.9 scf70 99.92 True fake: not a misassembly (possible transposable element) 54528208 54529200 401076 400084 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46710235 46711561 401084 402405 NC_000014.9 scf70 99.62 True fake: not a misassembly (possible transposable element) 54526259 54527762 403909 402406 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46712272 46721559 403910 413197 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 54518322 54519270 414146 413198 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46721745 46724640 414147 417034 NC_000014.9 scf70 99.69 True fake: not a misassembly (possible transposable element) 54515104 54516301 418232 417035 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46725048 46726488 418233 419673 NC_000014.9 scf70 100.0 True relocation, inconsistency = 7787074 54513572 54514437 420548 419683 NC_000014.9 scf70 100.0 True indel: indel (<= 5bp) 54507733 54513566 426382 420549 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 54506702 54507315 428310 427697 NC_000014.9 scf70 100.0 True local misassembly 54504965 54506578 429924 428311 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46733776 46734919 429925 431068 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 54503126 54504509 432922 431539 NC_000014.9 scf70 100.0 True relocation, inconsistency = 42202191 96706701 96708152 432923 434374 NC_000014.9 scf70 99.93 True indel: indel (<= 5bp) 96708154 96708843 434375 435064 NC_000014.9 scf70 100.0 True local misassembly 96709430 96712836 435229 438635 NC_000014.9 scf70 99.82 True fake: not a misassembly (possible transposable element) 46740678 46742673 438636 440632 NC_000014.9 scf70 99.9 True fake: not a misassembly (possible transposable element) 96714078 96715736 440633 442291 NC_000014.9 scf70 99.76 True relocation, inconsistency = -49972120 46743636 46751099 442311 449775 NC_000014.9 scf70 99.84 True relocation, inconsistency = 7736308 54487408 54488211 450579 449776 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 96720553 96725745 450640 455832 NC_000014.9 scf70 99.98 True fake: not a misassembly (possible transposable element) 54469556 54483835 470112 455833 NC_000014.9 scf70 100.0 True relocation, inconsistency = 42254575 96738411 96739175 470113 470878 NC_000014.9 scf70 99.87 True relocation, inconsistency = -49969932 46769244 46770562 470879 472197 NC_000014.9 scf70 99.7 True fake: not a misassembly (possible transposable element) 54461281 54468196 479145 472230 NC_000014.9 scf70 99.99 True fake: not a misassembly (possible transposable element) 46776755 46784887 479146 487278 NC_000014.9 scf70 99.9 True relocation, inconsistency = 49966705 96751614 96754089 487300 489774 NC_000014.9 scf70 99.72 True fake: scaffold gap size wrong estimation (local) 96754006 96758444 490469 494897 NC_000014.9 scf70 99.5 True fake: not a misassembly (possible transposable element) 54443208 54448741 500431 494898 NC_000014.9 scf70 99.91 True fake: not a misassembly (possible transposable element) 96763218 96764631 500438 501850 NC_000014.9 scf70 99.79 True relocation, inconsistency = -49968158 46796474 46819454 501851 524838 NC_000014.9 scf70 99.89 True fake: scaffold gap size wrong estimation (local) 46819376 46829239 525533 535405 NC_000014.9 scf70 99.83 True fake: not a misassembly (possible transposable element) 54411175 54413293 537524 535406 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46830711 46833112 537533 539950 NC_000014.9 scf70 99.22 True fake: not a misassembly (possible transposable element) 54406805 54409492 542638 539951 NC_000014.9 scf70 100.0 True fake: not a misassembly (possible transposable element) 46835051 46864071 542639 573136 NC_000014.9 scf70 99.46 True fake: scaffold gap size wrong estimation (local) 46864610 46865387 574603 575380 NC_000014.9 scf70 99.74 True fake: scaffold gap size wrong estimation (local) 46867454 46880703 578113 592156 NC_000014.9 scf70 99.73 True fake: scaffold gap size wrong estimation (local) 46880807 46895704 593062 608712 NC_000014.9 scf70 99.37 True fake: scaffold gap size wrong estimation (local) 46895621 46901331 609354 615041 NC_000014.9 scf70 98.9 True fake: scaffold gap size wrong estimation (local) 46901246 46904160 615746 618660 NC_000014.9 scf70 99.83 True fake: scaffold gap size wrong estimation (local) 46904066 46925735 619335 642494 NC_000014.9 scf70 99.64 True fake: scaffold gap size wrong estimation (local) 46925640 46929594 643079 647033 NC_000014.9 scf70 99.85 True fake: scaffold gap size wrong estimation (local) 46929671 46931596 647870 649798 NC_000014.9 scf70 99.53 True fake: scaffold gap size wrong estimation (local) 46931689 46938365 650692 658142 NC_000014.9 scf70 99.73 True fake: scaffold gap size wrong estimation (local) 46938541 46940383 659179 661026 NC_000014.9 scf70 99.51 True fake: scaffold gap size wrong estimation (local) 46940582 46959298 662109 680830 NC_000014.9 scf70 99.95 True fake: scaffold gap size wrong estimation (local) 46960062 46961785 682296 684019 NC_000014.9 scf70 99.94 True local misassembly 46959258 46960157 684875 685774 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 46961791 46964983 688336 691528 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 46965124 46969141 692476 696525 NC_000014.9 scf70 99.09 True fake: scaffold gap size wrong estimation (local) 46969610 46982690 697910 711887 NC_000014.9 scf70 98.69 True fake: scaffold gap size wrong estimation (local) 46983016 46990901 713037 720925 NC_000014.9 scf70 99.91 True fake: scaffold gap size wrong estimation (local) 46990856 47000334 721663 731134 NC_000014.9 scf70 99.84 True fake: scaffold gap size wrong estimation (local) 47000456 47022887 732141 756973 NC_000014.9 scf70 99.3 True fake: scaffold gap size wrong estimation (local) 47023133 47030410 757933 765210 NC_000014.9 scf70 99.99 True fake: scaffold gap size wrong estimation (local) 47030321 47036125 765890 771688 NC_000014.9 scf70 99.83 True fake: scaffold gap size wrong estimation (local) 47036278 47042406 772665 778824 NC_000014.9 scf70 99.4 True fake: scaffold gap size wrong estimation (local) 47042330 47045930 779439 783039 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 47047156 47053621 784950 791415 NC_000014.9 scf70 99.91 True fake: scaffold gap size wrong estimation (local) 47053661 47054416 792170 792925 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 47055003 47070864 793477 809338 NC_000014.9 scf70 99.92 True fake: scaffold gap size wrong estimation (local) 47070765 47074535 811401 815202 NC_000014.9 scf70 99.13 True fake: scaffold gap size wrong estimation (local) 47074442 47075966 815885 817409 NC_000014.9 scf70 100.0 True fake: scaffold gap size wrong estimation (local) 47075870 47104284 818154 848470 NC_000014.9 scf70 99.34 True CONTIG scf70 850330 misassembled 86318284 86319186 1 903 NC_000014.9 scf71 99.89 True local misassembly 86319449 86321140 904 2595 NC_000014.9 scf71 99.94 True fake: scaffold gap size wrong estimation (local) 86321141 86322770 3568 5197 NC_000014.9 scf71 99.88 True fake: scaffold gap size wrong estimation (local) 86322933 86330624 6362 14088 NC_000014.9 scf71 99.44 True fake: scaffold gap size wrong estimation (local) 86330798 86355736 15074 40029 NC_000014.9 scf71 99.76 True fake: scaffold gap size wrong estimation (local) 86356147 86375617 41033 60510 NC_000014.9 scf71 99.78 True fake: scaffold gap size wrong estimation (local) 86376100 86389346 61671 74915 NC_000014.9 scf71 99.72 True fake: scaffold gap size wrong estimation (local) 86389273 86394730 75600 81059 NC_000014.9 scf71 99.82 True fake: scaffold gap size wrong estimation (local) 86395276 86398124 82376 85224 NC_000014.9 scf71 100.0 True fake: scaffold gap size wrong estimation (local) 86398036 86406282 85925 94177 NC_000014.9 scf71 99.9 True fake: scaffold gap size wrong estimation (local) 86406500 86415697 95200 105100 NC_000014.9 scf71 99.41 True fake: scaffold gap size wrong estimation (local) 86415603 86417637 105738 107776 NC_000014.9 scf71 99.51 True fake: scaffold gap size wrong estimation (local) 86417939 86426963 109067 119808 NC_000014.9 scf71 96.92 True fake: scaffold gap size wrong estimation (local) 86426865 86443285 120480 139351 NC_000014.9 scf71 99.76 True fake: scaffold gap size wrong estimation (local) 86444375 86451213 141229 148040 NC_000014.9 scf71 99.14 True fake: scaffold gap size wrong estimation (local) 86451191 86471198 148877 169292 NC_000014.9 scf71 97.47 True CONTIG scf71 169292 correct 52530615 52537098 1 7306 NC_000014.9 scf72 99.97 True fake: scaffold gap size wrong estimation (local) 52537004 52551322 7943 23012 NC_000014.9 scf72 96.91 True fake: scaffold gap size wrong estimation (local) 52551243 52568933 23889 41596 NC_000014.9 scf72 99.87 True fake: scaffold gap size wrong estimation (local) 52568835 52569477 42332 42974 NC_000014.9 scf72 100.0 True local misassembly 52570240 52570828 43502 44090 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52570829 52571424 44292 44887 NC_000014.9 scf72 100.0 True indel: indel (> 5bp) 52571609 52572252 45102 45745 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52572202 52573342 46324 47489 NC_000014.9 scf72 97.86 True fake: scaffold gap size wrong estimation (local) 52573482 52573994 48319 48850 NC_000014.9 scf72 96.43 True fake: scaffold gap size wrong estimation (local) 52574383 52576985 50382 52984 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52577792 52579034 54583 55825 NC_000014.9 scf72 100.0 True local misassembly 52579186 52580455 55826 57095 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52581469 52585659 58967 63157 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52585562 52592202 63802 70468 NC_000014.9 scf72 99.61 True fake: scaffold gap size wrong estimation (local) 52592628 52594668 71991 75225 NC_000014.9 scf72 96.54 True fake: scaffold gap size wrong estimation (local) 52595191 52596030 75622 76490 NC_000014.9 scf72 96.55 True fake: scaffold gap size wrong estimation (local) 52595946 52599715 77399 81199 NC_000014.9 scf72 99.18 True fake: scaffold gap size wrong estimation (local) 52599632 52601495 81859 83722 NC_000014.9 scf72 100.0 True fake: scaffold gap size wrong estimation (local) 52601406 52625457 84468 108534 NC_000014.9 scf72 99.88 True fake: scaffold gap size wrong estimation (local) 52625701 52628694 109495 112794 NC_000014.9 scf72 96.89 True fake: scaffold gap size wrong estimation (local) 52628612 52638081 113548 123016 NC_000014.9 scf72 99.95 True fake: scaffold gap size wrong estimation (local) 52639585 52651180 125154 138329 NC_000014.9 scf72 99.79 True fake: scaffold gap size wrong estimation (local) 52651112 52655220 139014 143118 NC_000014.9 scf72 99.83 True fake: scaffold gap size wrong estimation (local) 52655332 52663462 143614 152650 NC_000014.9 scf72 99.34 True fake: scaffold gap size wrong estimation (local) 52663366 52686923 153319 181758 NC_000014.9 scf72 97.16 True fake: scaffold gap size wrong estimation (local) 52686839 52689023 182551 184735 NC_000014.9 scf72 99.95 True fake: scaffold gap size wrong estimation (local) 52688927 52693084 185505 190606 NC_000014.9 scf72 99.95 True fake: scaffold gap size wrong estimation (local) 52692995 52697319 191319 195671 NC_000014.9 scf72 99.29 True fake: scaffold gap size wrong estimation (local) 52697224 52698682 196347 197803 NC_000014.9 scf72 99.73 True CONTIG scf72 197803 correct 39899670 39921531 22592 1 NC_000014.9 scf73 99.85 True fake: scaffold gap size wrong estimation (local) 39882542 39899767 40524 23278 NC_000014.9 scf73 99.8 True fake: scaffold gap size wrong estimation (local) 39878985 39882635 45057 41218 NC_000014.9 scf73 98.46 True fake: scaffold gap size wrong estimation (local) 39876719 39879080 48157 45707 NC_000014.9 scf73 96.37 True fake: scaffold gap size wrong estimation (local) 39866283 39876816 60189 48862 NC_000014.9 scf73 99.03 True fake: scaffold gap size wrong estimation (local) 39862854 39866138 64320 61034 NC_000014.9 scf73 99.81 True fake: scaffold gap size wrong estimation (local) 39857233 39862269 71053 65626 NC_000014.9 scf73 97.99 True fake: scaffold gap size wrong estimation (local) 39846285 39857292 84032 72008 NC_000014.9 scf73 99.51 True fake: scaffold gap size wrong estimation (local) 39837946 39846375 94292 84797 NC_000014.9 scf73 99.77 True fake: scaffold gap size wrong estimation (local) 39826329 39838045 107436 94954 NC_000014.9 scf73 99.91 True fake: scaffold gap size wrong estimation (local) 39825150 39826419 109444 108175 NC_000014.9 scf73 99.76 True indel: indel (> 5bp) 39824511 39825118 110052 109445 NC_000014.9 scf73 100.0 True fake: scaffold gap size wrong estimation (local) 39821308 39822573 114803 113538 NC_000014.9 scf73 99.84 True fake: scaffold gap size wrong estimation (local) 39820322 39821013 115641 114934 NC_000014.9 scf73 97.74 True fake: scaffold gap size wrong estimation (local) 39815335 39820384 121471 116419 NC_000014.9 scf73 99.82 True fake: scaffold gap size wrong estimation (local) 39811496 39814925 126039 122610 NC_000014.9 scf73 99.8 True fake: scaffold gap size wrong estimation (local) 39799977 39811595 138331 126714 NC_000014.9 scf73 99.8 True fake: scaffold gap size wrong estimation (local) 39796187 39800066 142852 138973 NC_000014.9 scf73 100.0 True fake: scaffold gap size wrong estimation (local) 39790166 39796268 149608 143505 NC_000014.9 scf73 99.97 True fake: scaffold gap size wrong estimation (local) 39729253 39790221 215222 150330 NC_000014.9 scf73 99.76 True fake: scaffold gap size wrong estimation (local) 39727919 39729349 217338 215908 NC_000014.9 scf73 100.0 True fake: scaffold gap size wrong estimation (local) 39707955 39728011 238100 218044 NC_000014.9 scf73 99.89 True fake: scaffold gap size wrong estimation (local) 39703489 39708049 244684 240078 NC_000014.9 scf73 98.91 True CONTIG scf73 246757 correct 77568559 77569820 1273 12 NC_000014.9 scf74 99.92 True fake: scaffold gap size wrong estimation (local) 77565244 77566589 5260 3915 NC_000014.9 scf74 99.85 True fake: scaffold gap size wrong estimation (local) 77561962 77564472 9300 6808 NC_000014.9 scf74 99.08 True fake: scaffold gap size wrong estimation (local) 77559258 77561523 12774 10516 NC_000014.9 scf74 99.56 True fake: scaffold gap size wrong estimation (local) 77556087 77558313 16645 14421 NC_000014.9 scf74 99.78 True fake: scaffold gap size wrong estimation (local) 77553995 77556177 19565 17383 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 77552697 77553526 21803 20974 NC_000014.9 scf74 99.88 True local misassembly 77551392 77552434 22846 21804 NC_000014.9 scf74 99.9 True fake: scaffold gap size wrong estimation (local) 77550412 77550916 25400 24896 NC_000014.9 scf74 99.8 True indel: indel (> 5bp) 77549228 77550411 26643 25460 NC_000014.9 scf74 99.92 True indel: indel (<= 5bp) 77547887 77549227 27985 26645 NC_000014.9 scf74 99.78 True fake: scaffold gap size wrong estimation (local) 77540501 77547976 36174 28699 NC_000014.9 scf74 99.79 True fake: not a misassembly (possible transposable element) 30698090 30700630 36175 38715 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 77534113 77538704 43316 38716 NC_000014.9 scf74 99.28 True relocation, inconsistency = 46819967 30704545 30714145 43317 52917 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 77525690 77527013 54248 52918 NC_000014.9 scf74 99.5 True fake: not a misassembly (possible transposable element) 30714663 30719726 54249 59178 NC_000014.9 scf74 97.35 True fake: not a misassembly (possible transposable element) 77519208 77522799 62772 59179 NC_000014.9 scf74 99.89 True fake: not a misassembly (possible transposable element) 30722574 30724264 62773 64458 NC_000014.9 scf74 99.7 True fake: not a misassembly (possible transposable element) 77517004 77518312 65767 64459 NC_000014.9 scf74 99.85 True fake: not a misassembly (possible transposable element) 30724826 30728855 65768 69797 NC_000014.9 scf74 100.0 True relocation, scaffold gap is present, inconsistency = 46783397 77513017 77513785 71330 70562 NC_000014.9 scf74 99.61 True local misassembly 77501702 77512268 82613 72043 NC_000014.9 scf74 99.79 True fake: not a misassembly (possible transposable element) 30739538 30741418 82885 84765 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 77497835 77500348 87280 84767 NC_000014.9 scf74 99.81 True relocation, inconsistency = 10213269 67280792 67284565 87281 91054 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 30745941 30751752 91867 97678 NC_000014.9 scf74 99.91 True fake: not a misassembly (possible transposable element) 67289086 67294794 97731 103438 NC_000014.9 scf74 99.95 True fake: not a misassembly (possible transposable element) 30755921 30757922 103439 105440 NC_000014.9 scf74 99.55 True fake: not a misassembly (possible transposable element) 67296586 67298559 105871 107844 NC_000014.9 scf74 99.95 True fake: not a misassembly (possible transposable element) 30759523 30762172 107845 110496 NC_000014.9 scf74 99.74 True fake: not a misassembly (possible transposable element) 67300354 67306553 110497 116696 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 30767653 30768183 116697 117227 NC_000014.9 scf74 99.81 True fake: not a misassembly (possible transposable element) 67306462 67308325 117484 119347 NC_000014.9 scf74 100.0 True relocation, inconsistency = -36538824 30769502 30776993 119348 126837 NC_000014.9 scf74 99.84 True relocation, inconsistency = 36537306 67314300 67324918 126838 138227 NC_000014.9 scf74 99.64 True relocation, inconsistency = -36539536 30785383 30786069 138228 138925 NC_000014.9 scf74 98.42 True fake: scaffold gap size wrong estimation (local) 30785974 30803187 139715 157345 NC_000014.9 scf74 97.86 True fake: scaffold gap size wrong estimation (local) 30803092 30808117 158030 163055 NC_000014.9 scf74 99.96 True fake: scaffold gap size wrong estimation (local) 30808042 30813169 163731 168857 NC_000014.9 scf74 99.94 True fake: scaffold gap size wrong estimation (local) 30813113 30816360 169595 172975 NC_000014.9 scf74 96.43 True fake: scaffold gap size wrong estimation (local) 30816655 30822556 174308 180250 NC_000014.9 scf74 99.19 True fake: scaffold gap size wrong estimation (local) 30822460 30825512 181031 183944 NC_000014.9 scf74 95.35 True fake: scaffold gap size wrong estimation (local) 30825418 30827897 184663 187142 NC_000014.9 scf74 99.96 True fake: scaffold gap size wrong estimation (local) 30828081 30829070 188643 189632 NC_000014.9 scf74 99.8 True local misassembly 30829664 30831027 189633 190996 NC_000014.9 scf74 99.93 True fake: scaffold gap size wrong estimation (local) 30830945 30835550 192342 197738 NC_000014.9 scf74 99.18 True fake: scaffold gap size wrong estimation (local) 30835859 30836499 197918 198558 NC_000014.9 scf74 99.84 True fake: scaffold gap size wrong estimation (local) 30836571 30837194 199660 200283 NC_000014.9 scf74 99.84 True local misassembly 30837678 30838540 200471 201333 NC_000014.9 scf74 99.54 True fake: scaffold gap size wrong estimation (local) 30838451 30839640 202857 204046 NC_000014.9 scf74 99.75 True local misassembly 30840444 30841358 204047 204961 NC_000014.9 scf74 99.78 True fake: scaffold gap size wrong estimation (local) 30841263 30848148 206438 214156 NC_000014.9 scf74 98.75 True fake: scaffold gap size wrong estimation (local) 30848061 30851221 214829 217989 NC_000014.9 scf74 99.97 True fake: scaffold gap size wrong estimation (local) 30851178 30853250 218747 220819 NC_000014.9 scf74 99.95 True fake: scaffold gap size wrong estimation (local) 30853251 30854710 221857 223316 NC_000014.9 scf74 99.93 True local misassembly 30855538 30856523 223672 224657 NC_000014.9 scf74 99.8 True fake: scaffold gap size wrong estimation (local) 30856524 30858716 225703 227895 NC_000014.9 scf74 99.91 True fake: scaffold gap size wrong estimation (local) 30858879 30862684 228928 232732 NC_000014.9 scf74 99.82 True fake: scaffold gap size wrong estimation (local) 30862613 30878557 233415 249356 NC_000014.9 scf74 99.91 True fake: scaffold gap size wrong estimation (local) 30878473 30881881 250037 253445 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 62610415 62610966 254434 253883 NC_000014.9 scf74 99.29 True fake: not a misassembly (possible transposable element) 30882122 30893178 254435 265487 NC_000014.9 scf74 99.85 True fake: scaffold gap size wrong estimation (local) 30893290 30898230 266441 272159 NC_000014.9 scf74 99.06 True fake: scaffold gap size wrong estimation (local) 30898133 30900176 272867 274910 NC_000014.9 scf74 99.9 True fake: scaffold gap size wrong estimation (local) 30900083 30902035 275660 277611 NC_000014.9 scf74 99.95 True fake: scaffold gap size wrong estimation (local) 30902211 30914353 278558 291492 NC_000014.9 scf74 99.35 True fake: scaffold gap size wrong estimation (local) 30914574 30916391 292502 294318 NC_000014.9 scf74 99.72 True fake: scaffold gap size wrong estimation (local) 30916631 30924224 295340 303645 NC_000014.9 scf74 99.36 True fake: scaffold gap size wrong estimation (local) 30924485 30929977 304718 311017 NC_000014.9 scf74 98.25 True fake: scaffold gap size wrong estimation (local) 30930231 30932030 312218 314017 NC_000014.9 scf74 99.67 True fake: scaffold gap size wrong estimation (local) 30932114 30957269 316246 342333 NC_000014.9 scf74 99.79 True fake: scaffold gap size wrong estimation (local) 30957469 30960697 343313 346541 NC_000014.9 scf74 99.91 True fake: scaffold gap size wrong estimation (local) 30960869 30968395 347489 356038 NC_000014.9 scf74 96.83 True fake: scaffold gap size wrong estimation (local) 30968655 30972346 357312 361001 NC_000014.9 scf74 99.81 True fake: scaffold gap size wrong estimation (local) 30972250 30976974 361719 367450 NC_000014.9 scf74 98.93 True fake: scaffold gap size wrong estimation (local) 30977630 30980500 369024 372077 NC_000014.9 scf74 96.85 True fake: scaffold gap size wrong estimation (local) 30980413 30981375 372603 373565 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 30982099 30983356 374726 375983 NC_000014.9 scf74 100.0 True local misassembly 30983610 30984135 375984 376509 NC_000014.9 scf74 99.62 True fake: scaffold gap size wrong estimation (local) 30984703 30987417 378115 380856 NC_000014.9 scf74 98.51 True fake: scaffold gap size wrong estimation (local) 30987843 30989519 382096 383772 NC_000014.9 scf74 99.94 True fake: scaffold gap size wrong estimation (local) 30990007 30992291 385349 387633 NC_000014.9 scf74 99.91 True local misassembly 30992552 30993703 387634 388785 NC_000014.9 scf74 97.83 True fake: scaffold gap size wrong estimation (local) 30993610 31001928 389599 398758 NC_000014.9 scf74 99.32 True fake: scaffold gap size wrong estimation (local) 31002473 31003134 399337 400015 NC_000014.9 scf74 97.5 True fake: scaffold gap size wrong estimation (local) 31003797 31013968 401215 413397 NC_000014.9 scf74 95.34 True fake: scaffold gap size wrong estimation (local) 31014283 31015609 414712 416038 NC_000014.9 scf74 99.92 True local misassembly 31015890 31017398 416039 417547 NC_000014.9 scf74 99.93 True fake: scaffold gap size wrong estimation (local) 31017399 31018934 418593 420128 NC_000014.9 scf74 100.0 True local misassembly 31019299 31019892 420129 420722 NC_000014.9 scf74 99.83 True fake: scaffold gap size wrong estimation (local) 31019849 31020558 422038 422747 NC_000014.9 scf74 99.86 True local misassembly 31020866 31022246 422748 424128 NC_000014.9 scf74 99.71 True local misassembly 31022753 31023832 424129 425208 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31023833 31028623 426964 431709 NC_000014.9 scf74 99.02 True fake: scaffold gap size wrong estimation (local) 31028758 31032537 432666 436462 NC_000014.9 scf74 99.13 True fake: scaffold gap size wrong estimation (local) 31033681 31034611 438345 439275 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31034612 31035965 439452 440805 NC_000014.9 scf74 98.6 True fake: scaffold gap size wrong estimation (local) 31035966 31039274 441818 445126 NC_000014.9 scf74 99.82 True fake: scaffold gap size wrong estimation (local) 31039838 31040954 446558 447674 NC_000014.9 scf74 99.91 True local misassembly 31041247 31043223 447675 449651 NC_000014.9 scf74 99.75 True fake: scaffold gap size wrong estimation (local) 31043224 31044987 450537 452300 NC_000014.9 scf74 99.94 True local misassembly 31045085 31045982 452301 453198 NC_000014.9 scf74 99.78 True fake: scaffold gap size wrong estimation (local) 31045983 31047431 454038 455486 NC_000014.9 scf74 99.24 True fake: scaffold gap size wrong estimation (local) 31048326 31049187 457464 458325 NC_000014.9 scf74 99.88 True fake: scaffold gap size wrong estimation (local) 31049475 31050146 459585 460271 NC_000014.9 scf74 97.67 True fake: scaffold gap size wrong estimation (local) 31050120 31051451 461404 462735 NC_000014.9 scf74 100.0 True local misassembly 31051859 31053020 462736 463897 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31052956 31053608 465106 465758 NC_000014.9 scf74 99.85 True fake: scaffold gap size wrong estimation (local) 31054870 31055728 466309 467167 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31056382 31057648 468829 470095 NC_000014.9 scf74 99.84 True fake: scaffold gap size wrong estimation (local) 31057928 31058553 470706 471331 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31058554 31061590 472355 475391 NC_000014.9 scf74 99.84 True fake: scaffold gap size wrong estimation (local) 31061935 31063256 476762 478083 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31063172 31065817 478850 481495 NC_000014.9 scf74 99.92 True fake: scaffold gap size wrong estimation (local) 31065782 31067598 482394 484211 NC_000014.9 scf74 99.67 True fake: scaffold gap size wrong estimation (local) 31067728 31073265 485502 491984 NC_000014.9 scf74 98.25 True fake: scaffold gap size wrong estimation (local) 31074673 31075741 494292 495360 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31075864 31080904 496279 501319 NC_000014.9 scf74 99.94 True fake: scaffold gap size wrong estimation (local) 31080981 31082696 502175 503890 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31082884 31083589 503971 504674 NC_000014.9 scf74 99.72 True fake: scaffold gap size wrong estimation (local) 31083509 31089711 505474 511815 NC_000014.9 scf74 99.07 True fake: scaffold gap size wrong estimation (local) 31089613 31094651 512714 518548 NC_000014.9 scf74 97.43 True fake: scaffold gap size wrong estimation (local) 31094817 31099608 518720 524379 NC_000014.9 scf74 99.38 True fake: scaffold gap size wrong estimation (local) 31099511 31101692 525061 527242 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31102639 31103355 529012 529728 NC_000014.9 scf74 99.72 True local misassembly 31103523 31104999 529729 531205 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31105244 31108589 532292 535637 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31108494 31111526 536372 539276 NC_000014.9 scf74 95.75 True fake: scaffold gap size wrong estimation (local) 31111432 31116729 540137 545267 NC_000014.9 scf74 96.81 True fake: not a misassembly (possible transposable element) 104834569 104836352 547073 545268 NC_000014.9 scf74 98.78 True fake: not a misassembly (possible transposable element) 31118212 31120307 548553 550642 NC_000014.9 scf74 99.67 True fake: not a misassembly (possible transposable element) 104830630 104831622 551637 550643 NC_000014.9 scf74 99.62 True fake: not a misassembly (possible transposable element) 31120398 31122251 551638 553491 NC_000014.9 scf74 99.89 True relocation, inconsistency = 73706423 104828684 104829573 554390 553501 NC_000014.9 scf74 100.0 True local misassembly 104826711 104828416 556146 554441 NC_000014.9 scf74 99.94 True fake: not a misassembly (possible transposable element) 31124065 31124905 556147 556987 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 104825662 104826624 558007 557045 NC_000014.9 scf74 99.69 True relocation, scaffold gap is present, inconsistency = 73693345 31125174 31132273 558051 565986 NC_000014.9 scf74 96.93 True relocation, inconsistency = 73686764 104819055 104819700 566649 566004 NC_000014.9 scf74 99.85 True local misassembly 104817477 104818909 568082 566650 NC_000014.9 scf74 99.93 True fake: not a misassembly (possible transposable element) 31133565 31134554 568083 569072 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 104815196 104817367 571246 569075 NC_000014.9 scf74 99.91 True fake: not a misassembly (possible transposable element) 31136249 31136892 571487 572130 NC_000014.9 scf74 100.0 True fake: not a misassembly (possible transposable element) 104813220 104814957 574052 572315 NC_000014.9 scf74 99.77 True fake: not a misassembly (possible transposable element) 31137912 31139145 574104 575331 NC_000014.9 scf74 99.51 True fake: not a misassembly (possible transposable element) 104811495 104812742 576842 575595 NC_000014.9 scf74 99.76 True relocation, inconsistency = 73670610 31139714 31140884 576843 578013 NC_000014.9 scf74 99.91 True fake: scaffold gap size wrong estimation (local) 31140787 31143328 578771 581312 NC_000014.9 scf74 99.92 True fake: scaffold gap size wrong estimation (local) 31143249 31151451 581960 590919 NC_000014.9 scf74 99.08 True fake: scaffold gap size wrong estimation (local) 31151367 31152426 593277 594365 NC_000014.9 scf74 97.06 True fake: scaffold gap size wrong estimation (local) 31153502 31154272 596652 597422 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31156519 31158339 600001 601821 NC_000014.9 scf74 99.95 True fake: scaffold gap size wrong estimation (local) 31158721 31161579 602994 605852 NC_000014.9 scf74 99.97 True fake: scaffold gap size wrong estimation (local) 31161836 31164919 606820 609912 NC_000014.9 scf74 99.52 True fake: scaffold gap size wrong estimation (local) 31164833 31168852 610558 614576 NC_000014.9 scf74 99.85 True fake: scaffold gap size wrong estimation (local) 31168800 31174423 615415 620880 NC_000014.9 scf74 97.05 True fake: scaffold gap size wrong estimation (local) 31174326 31178607 621577 625820 NC_000014.9 scf74 99.02 True fake: scaffold gap size wrong estimation (local) 31178583 31181685 626594 629711 NC_000014.9 scf74 99.52 True fake: scaffold gap size wrong estimation (local) 31182438 31186784 631222 635568 NC_000014.9 scf74 99.98 True fake: scaffold gap size wrong estimation (local) 31187034 31192408 636575 641942 NC_000014.9 scf74 99.83 True fake: scaffold gap size wrong estimation (local) 31192327 31203904 642586 656026 NC_000014.9 scf74 99.37 True fake: scaffold gap size wrong estimation (local) 31204027 31214068 656963 670687 NC_000014.9 scf74 99.28 True fake: scaffold gap size wrong estimation (local) 31215178 31216014 672612 673448 NC_000014.9 scf74 99.76 True indel: indel (<= 5bp) 31216015 31217703 673450 675138 NC_000014.9 scf74 100.0 True fake: scaffold gap size wrong estimation (local) 31218369 31224542 676736 682772 NC_000014.9 scf74 96.62 True fake: scaffold gap size wrong estimation (local) 31224460 31227513 683476 686451 NC_000014.9 scf74 97.22 True fake: scaffold gap size wrong estimation (local) 31228234 31232778 687926 693246 NC_000014.9 scf74 97.43 True fake: scaffold gap size wrong estimation (local) 31233100 31236179 693516 697073 NC_000014.9 scf74 97.22 True fake: scaffold gap size wrong estimation (local) 31236081 31238451 698114 700537 NC_000014.9 scf74 97.52 True fake: scaffold gap size wrong estimation (local) 31238358 31246363 701399 710190 NC_000014.9 scf74 98.98 True CONTIG scf74 712094 misassembled 22604654 22615703 13236 1469 NC_000014.9 scf75 98.68 True fake: scaffold gap size wrong estimation (local) 22597071 22604289 21562 14348 NC_000014.9 scf75 99.78 True fake: scaffold gap size wrong estimation (local) 22594712 22597169 24719 22260 NC_000014.9 scf75 99.84 True fake: scaffold gap size wrong estimation (local) 22590744 22594800 29499 25443 NC_000014.9 scf75 99.95 True relocation, inconsistency = 28158553 50753358 50755706 29504 31849 NC_000014.9 scf75 99.62 True fake: scaffold gap size wrong estimation (local) 50755656 50762063 32593 39781 NC_000014.9 scf75 99.67 True fake: scaffold gap size wrong estimation (local) 50761966 50765134 40480 43637 NC_000014.9 scf75 99.56 True fake: scaffold gap size wrong estimation (local) 50765071 50769898 44358 50037 NC_000014.9 scf75 99.69 True fake: scaffold gap size wrong estimation (local) 50769823 50779593 50793 60563 NC_000014.9 scf75 99.97 True fake: scaffold gap size wrong estimation (local) 50779703 50798918 61506 82424 NC_000014.9 scf75 99.31 True fake: scaffold gap size wrong estimation (local) 50798828 50800866 84327 86353 NC_000014.9 scf75 99.36 True fake: scaffold gap size wrong estimation (local) 50801199 50809276 87528 95626 NC_000014.9 scf75 99.63 True fake: scaffold gap size wrong estimation (local) 50809181 50810068 96332 97219 NC_000014.9 scf75 99.89 True fake: scaffold gap size wrong estimation (local) 50810232 50811857 97398 99163 NC_000014.9 scf75 97.98 True fake: scaffold gap size wrong estimation (local) 50812068 50815003 100017 102952 NC_000014.9 scf75 99.9 True fake: scaffold gap size wrong estimation (local) 50814909 50842123 103607 131741 NC_000014.9 scf75 99.51 True fake: scaffold gap size wrong estimation (local) 50842221 50849534 132555 139868 NC_000014.9 scf75 99.84 True fake: scaffold gap size wrong estimation (local) 50849705 50853145 140864 145219 NC_000014.9 scf75 99.94 True fake: scaffold gap size wrong estimation (local) 50853365 50856163 145821 148619 NC_000014.9 scf75 99.96 True fake: scaffold gap size wrong estimation (local) 50856352 50859521 149636 152805 NC_000014.9 scf75 99.97 True fake: scaffold gap size wrong estimation (local) 50859428 50860024 153544 154140 NC_000014.9 scf75 100.0 True local misassembly 50860211 50868533 154202 163304 NC_000014.9 scf75 99.88 True fake: scaffold gap size wrong estimation (local) 50868446 50874375 163999 170794 NC_000014.9 scf75 98.6 True fake: scaffold gap size wrong estimation (local) 50874610 50882186 171848 180207 NC_000014.9 scf75 98.88 True fake: scaffold gap size wrong estimation (local) 50882993 50886341 181803 186919 NC_000014.9 scf75 97.6 True fake: scaffold gap size wrong estimation (local) 50887212 50888208 188788 189784 NC_000014.9 scf75 99.7 True local misassembly 50888881 50889419 190068 190606 NC_000014.9 scf75 99.81 True fake: scaffold gap size wrong estimation (local) 50889420 50891250 191776 193606 NC_000014.9 scf75 99.56 True fake: scaffold gap size wrong estimation (local) 50891337 50893251 194612 196526 NC_000014.9 scf75 99.9 True CONTIG scf75 199219 misassembled 71982188 71998104 1 16599 NC_000014.9 scf76 98.78 True fake: scaffold gap size wrong estimation (local) 71998005 72016556 17218 37313 NC_000014.9 scf76 99.29 True fake: scaffold gap size wrong estimation (local) 72016492 72031442 37984 53680 NC_000014.9 scf76 99.92 True fake: scaffold gap size wrong estimation (local) 72031361 72038322 54346 61307 NC_000014.9 scf76 99.97 True fake: scaffold gap size wrong estimation (local) 72038224 72039834 61981 63591 NC_000014.9 scf76 99.88 True fake: scaffold gap size wrong estimation (local) 72039805 72068561 64400 96194 NC_000014.9 scf76 98.97 True fake: scaffold gap size wrong estimation (local) 72068464 72072404 97117 102166 NC_000014.9 scf76 97.28 True fake: scaffold gap size wrong estimation (local) 72072314 72078471 102879 109036 NC_000014.9 scf76 99.84 True fake: scaffold gap size wrong estimation (local) 72078377 72099393 109719 132296 NC_000014.9 scf76 99.2 True fake: scaffold gap size wrong estimation (local) 72099316 72116936 132985 150649 NC_000014.9 scf76 99.67 True fake: scaffold gap size wrong estimation (local) 72116853 72137363 151377 171877 NC_000014.9 scf76 99.83 True fake: scaffold gap size wrong estimation (local) 72137264 72138474 172666 173876 NC_000014.9 scf76 100.0 True local misassembly 72138835 72147961 174063 183924 NC_000014.9 scf76 99.77 True fake: scaffold gap size wrong estimation (local) 72148105 72152267 184874 189469 NC_000014.9 scf76 97.49 True fake: scaffold gap size wrong estimation (local) 72152518 72157950 190786 197042 NC_000014.9 scf76 98.93 True fake: scaffold gap size wrong estimation (local) 72157902 72161807 197747 201652 NC_000014.9 scf76 99.9 True fake: scaffold gap size wrong estimation (local) 72162187 72162907 202772 203492 NC_000014.9 scf76 99.86 True local misassembly 72162908 72163731 203595 204418 NC_000014.9 scf76 100.0 True fake: scaffold gap size wrong estimation (local) 72163721 72166132 205082 207491 NC_000014.9 scf76 99.88 True fake: scaffold gap size wrong estimation (local) 72166044 72181895 208230 224075 NC_000014.9 scf76 99.89 True fake: scaffold gap size wrong estimation (local) 72182212 72191989 225177 236429 NC_000014.9 scf76 99.47 True fake: scaffold gap size wrong estimation (local) 72191893 72215856 237099 261037 NC_000014.9 scf76 99.74 True fake: scaffold gap size wrong estimation (local) 72215807 72224024 261734 269951 NC_000014.9 scf76 99.9 True fake: scaffold gap size wrong estimation (local) 72223931 72226803 270601 273473 NC_000014.9 scf76 99.69 True fake: scaffold gap size wrong estimation (local) 72226765 72228620 274249 276104 NC_000014.9 scf76 99.89 True fake: scaffold gap size wrong estimation (local) 72228529 72229783 277385 278657 NC_000014.9 scf76 98.43 True fake: scaffold gap size wrong estimation (local) 72230631 72240226 280442 290038 NC_000014.9 scf76 99.73 True fake: scaffold gap size wrong estimation (local) 72240131 72246620 290775 298018 NC_000014.9 scf76 99.68 True fake: scaffold gap size wrong estimation (local) 72246909 72249903 299084 302078 NC_000014.9 scf76 99.87 True fake: scaffold gap size wrong estimation (local) 72250126 72253755 303042 306671 NC_000014.9 scf76 99.81 True fake: scaffold gap size wrong estimation (local) 72253656 72259700 307325 313369 NC_000014.9 scf76 99.88 True fake: scaffold gap size wrong estimation (local) 72259899 72277907 314337 333096 NC_000014.9 scf76 99.47 True fake: scaffold gap size wrong estimation (local) 72277809 72281165 333753 337109 NC_000014.9 scf76 99.97 True CONTIG scf76 337123 correct 47897415 47901283 3869 1 NC_000014.9 scf77 99.77 True fake: scaffold gap size wrong estimation (local) 47871011 47897513 31789 4524 NC_000014.9 scf77 99.83 True fake: scaffold gap size wrong estimation (local) 47868682 47871106 34912 32482 NC_000014.9 scf77 99.67 True fake: scaffold gap size wrong estimation (local) 47862115 47868781 41986 35635 NC_000014.9 scf77 95.17 True fake: scaffold gap size wrong estimation (local) 47850588 47862212 54279 43158 NC_000014.9 scf77 95.03 True fake: scaffold gap size wrong estimation (local) 47839946 47850677 66485 54993 NC_000014.9 scf77 99.73 True fake: scaffold gap size wrong estimation (local) 47837923 47840036 69325 67213 NC_000014.9 scf77 99.29 True CONTIG scf77 69328 correct 25784543 25788794 1 4241 NC_000014.9 scf78 99.06 True fake: scaffold gap size wrong estimation (local) 25788750 25797238 4935 13423 NC_000014.9 scf78 99.92 True fake: scaffold gap size wrong estimation (local) 25797150 25804598 14126 21575 NC_000014.9 scf78 99.95 True fake: scaffold gap size wrong estimation (local) 25804499 25808409 22264 26172 NC_000014.9 scf78 99.85 True fake: scaffold gap size wrong estimation (local) 25808313 25828133 26812 46904 NC_000014.9 scf78 99.55 True fake: scaffold gap size wrong estimation (local) 25828369 25852036 47939 71607 NC_000014.9 scf78 99.98 True CONTIG scf78 71607 correct 27678884 27702096 3 23230 NC_000014.9 scf79 99.85 True fake: not a misassembly (possible transposable element) 34142689 34143247 23231 23799 NC_000014.9 scf79 97.42 True fake: not a misassembly (possible transposable element) 27701978 27707197 23932 29076 NC_000014.9 scf79 98.43 True fake: scaffold gap size wrong estimation (local) 27707383 27715120 29931 37736 NC_000014.9 scf79 99.08 True fake: scaffold gap size wrong estimation (local) 27715026 27735509 38574 59801 NC_000014.9 scf79 99.91 True fake: scaffold gap size wrong estimation (local) 27735655 27737238 60751 62334 NC_000014.9 scf79 99.87 True fake: scaffold gap size wrong estimation (local) 27737175 27741017 63091 66922 NC_000014.9 scf79 99.45 True fake: scaffold gap size wrong estimation (local) 27740933 27765588 67548 95072 NC_000014.9 scf79 99.32 True fake: scaffold gap size wrong estimation (local) 27765492 27767317 95814 97662 NC_000014.9 scf79 98.7 True fake: scaffold gap size wrong estimation (local) 27767438 27779174 98721 112932 NC_000014.9 scf79 95.43 True fake: scaffold gap size wrong estimation (local) 27779562 27796190 114019 131482 NC_000014.9 scf79 99.94 True fake: scaffold gap size wrong estimation (local) 27796111 27797202 132404 133495 NC_000014.9 scf79 99.91 True fake: scaffold gap size wrong estimation (local) 27797379 27803489 134698 140809 NC_000014.9 scf79 99.98 True fake: scaffold gap size wrong estimation (local) 27803395 27805880 141513 144010 NC_000014.9 scf79 99.32 True fake: scaffold gap size wrong estimation (local) 27805783 27810072 144892 149235 NC_000014.9 scf79 98.71 True fake: scaffold gap size wrong estimation (local) 27809986 27810513 150096 150623 NC_000014.9 scf79 100.0 True local misassembly 27810694 27812775 150624 152705 NC_000014.9 scf79 99.9 True fake: scaffold gap size wrong estimation (local) 27812971 27814821 153762 155612 NC_000014.9 scf79 99.95 True fake: scaffold gap size wrong estimation (local) 27814822 27815338 155724 156240 NC_000014.9 scf79 99.81 True fake: scaffold gap size wrong estimation (local) 27815776 27818877 157390 160491 NC_000014.9 scf79 99.94 True fake: scaffold gap size wrong estimation (local) 27818787 27819433 161294 161940 NC_000014.9 scf79 100.0 True indel: indel (> 5bp) 27819865 27820716 162378 163229 NC_000014.9 scf79 100.0 True fake: scaffold gap size wrong estimation (local) 27821002 27822231 163881 165110 NC_000014.9 scf79 100.0 True fake: scaffold gap size wrong estimation (local) 27822371 27838750 166294 184312 NC_000014.9 scf79 99.49 True fake: scaffold gap size wrong estimation (local) 27838702 27842932 184950 189872 NC_000014.9 scf79 97.19 True fake: scaffold gap size wrong estimation (local) 27843627 27844597 191128 192098 NC_000014.9 scf79 100.0 True fake: scaffold gap size wrong estimation (local) 27844617 27850312 192988 199269 NC_000014.9 scf79 96.47 True fake: scaffold gap size wrong estimation (local) 27850601 27851130 200626 201155 NC_000014.9 scf79 100.0 True local misassembly 27852527 27853941 202471 203885 NC_000014.9 scf79 100.0 True fake: scaffold gap size wrong estimation (local) 27853853 27856982 204641 207770 NC_000014.9 scf79 99.9 True fake: scaffold gap size wrong estimation (local) 27856902 27859569 208404 211041 NC_000014.9 scf79 98.5 True fake: scaffold gap size wrong estimation (local) 27859758 27860275 212434 212951 NC_000014.9 scf79 99.61 True fake: scaffold gap size wrong estimation (local) 27861705 27872251 215300 225847 NC_000014.9 scf79 99.9 True fake: scaffold gap size wrong estimation (local) 27872161 27880707 226669 236053 NC_000014.9 scf79 99.43 True fake: scaffold gap size wrong estimation (local) 27880650 27887622 236818 243790 NC_000014.9 scf79 99.93 True fake: scaffold gap size wrong estimation (local) 27887528 27891141 244447 248060 NC_000014.9 scf79 99.97 True fake: scaffold gap size wrong estimation (local) 27891060 27902097 248775 259812 NC_000014.9 scf79 99.95 True fake: scaffold gap size wrong estimation (local) 27902004 27904432 260489 263011 NC_000014.9 scf79 96.92 True fake: scaffold gap size wrong estimation (local) 27904339 27908607 263716 268000 NC_000014.9 scf79 99.53 True fake: scaffold gap size wrong estimation (local) 27908751 27918488 268927 278566 NC_000014.9 scf79 98.84 True fake: scaffold gap size wrong estimation (local) 27918320 27919817 280246 281779 NC_000014.9 scf79 97.46 True fake: scaffold gap size wrong estimation (local) 27921282 27926197 283996 288911 NC_000014.9 scf79 99.9 True fake: scaffold gap size wrong estimation (local) 27926109 27940863 289549 304302 NC_000014.9 scf79 99.95 True fake: scaffold gap size wrong estimation (local) 27940812 27942221 305047 306400 NC_000014.9 scf79 95.96 True fake: scaffold gap size wrong estimation (local) 27943083 27949477 308615 315780 NC_000014.9 scf79 97.19 True fake: scaffold gap size wrong estimation (local) 27949674 27969968 316813 337842 NC_000014.9 scf79 98.71 True fake: scaffold gap size wrong estimation (local) 27969870 27984842 338981 354624 NC_000014.9 scf79 98.31 True fake: scaffold gap size wrong estimation (local) 27984952 28005711 355485 376243 NC_000014.9 scf79 99.87 True fake: scaffold gap size wrong estimation (local) 28005614 28025354 376926 397468 NC_000014.9 scf79 99.89 True fake: scaffold gap size wrong estimation (local) 28025290 28035680 398222 409454 NC_000014.9 scf79 99.64 True fake: scaffold gap size wrong estimation (local) 28035585 28041147 410195 415654 NC_000014.9 scf79 97.97 True fake: scaffold gap size wrong estimation (local) 28041077 28056741 416310 432634 NC_000014.9 scf79 99.2 True fake: scaffold gap size wrong estimation (local) 28056838 28065525 433839 442526 NC_000014.9 scf79 99.93 True fake: scaffold gap size wrong estimation (local) 28065434 28068029 443169 445781 NC_000014.9 scf79 99.08 True fake: scaffold gap size wrong estimation (local) 28068249 28071340 446661 449762 NC_000014.9 scf79 99.55 True fake: scaffold gap size wrong estimation (local) 28071496 28073858 450673 453014 NC_000014.9 scf79 99.11 True fake: scaffold gap size wrong estimation (local) 28075307 28096788 455569 477090 NC_000014.9 scf79 99.72 True fake: scaffold gap size wrong estimation (local) 28096623 28111590 477748 493541 NC_000014.9 scf79 99.22 True CONTIG scf79 493541 correct 45413195 45413709 620 106 NC_000014.9 scf80 100.0 True indel: indel (> 5bp) 45412358 45413194 1532 696 NC_000014.9 scf80 99.88 True fake: scaffold gap size wrong estimation (local) 45405527 45412446 9254 2300 NC_000014.9 scf80 99.45 True fake: scaffold gap size wrong estimation (local) 45398062 45405341 18307 10264 NC_000014.9 scf80 99.66 True fake: scaffold gap size wrong estimation (local) 45390755 45398151 26680 19243 NC_000014.9 scf80 99.41 True fake: scaffold gap size wrong estimation (local) 45385024 45389060 33258 29222 NC_000014.9 scf80 99.98 True fake: scaffold gap size wrong estimation (local) 45360709 45384319 58277 34667 NC_000014.9 scf80 99.97 True fake: scaffold gap size wrong estimation (local) 45351955 45360781 67797 58971 NC_000014.9 scf80 99.92 True CONTIG scf80 67797 correct 82676304 82686951 3 11400 NC_000014.9 scf81 99.18 True fake: scaffold gap size wrong estimation (local) 82686857 82695630 12020 20888 NC_000014.9 scf81 99.8 True fake: scaffold gap size wrong estimation (local) 82695543 82715522 21735 42442 NC_000014.9 scf81 99.8 True fake: scaffold gap size wrong estimation (local) 82715445 82721924 43146 49613 NC_000014.9 scf81 99.71 True fake: scaffold gap size wrong estimation (local) 82721852 82738521 50288 69086 NC_000014.9 scf81 98.96 True fake: scaffold gap size wrong estimation (local) 82738730 82747418 70275 79747 NC_000014.9 scf81 98.79 True fake: scaffold gap size wrong estimation (local) 82747324 82760261 80416 93352 NC_000014.9 scf81 99.85 True fake: scaffold gap size wrong estimation (local) 82760344 82761411 93531 94596 NC_000014.9 scf81 99.81 True fake: scaffold gap size wrong estimation (local) 82761342 82766034 95254 99946 NC_000014.9 scf81 99.94 True fake: scaffold gap size wrong estimation (local) 82765938 82773095 100609 108537 NC_000014.9 scf81 99.54 True fake: scaffold gap size wrong estimation (local) 82773344 82776346 109603 112605 NC_000014.9 scf81 99.9 True fake: scaffold gap size wrong estimation (local) 82776251 82787162 113284 124192 NC_000014.9 scf81 99.94 True fake: scaffold gap size wrong estimation (local) 82787075 82810683 124867 148474 NC_000014.9 scf81 99.96 True fake: scaffold gap size wrong estimation (local) 82810868 82813754 149402 152288 NC_000014.9 scf81 99.97 True fake: scaffold gap size wrong estimation (local) 82815518 82818769 154817 158068 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 82818695 82825748 158708 165761 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 82825878 82831993 166661 172776 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 82831894 82837821 173424 179350 NC_000014.9 scf81 99.98 True fake: scaffold gap size wrong estimation (local) 82837725 82862911 180057 206046 NC_000014.9 scf81 99.86 True fake: scaffold gap size wrong estimation (local) 82863043 82873802 206927 217686 NC_000014.9 scf81 99.94 True fake: scaffold gap size wrong estimation (local) 82873745 82885760 218381 230395 NC_000014.9 scf81 99.95 True fake: scaffold gap size wrong estimation (local) 82886141 82888039 231596 233498 NC_000014.9 scf81 99.68 True fake: scaffold gap size wrong estimation (local) 82888862 82889877 235201 236216 NC_000014.9 scf81 100.0 True local misassembly 82888139 82888880 236217 236958 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 82889816 82895258 238790 245056 NC_000014.9 scf81 98.19 True fake: scaffold gap size wrong estimation (local) 82895162 82909615 245956 260442 NC_000014.9 scf81 99.68 True fake: scaffold gap size wrong estimation (local) 82909550 82914346 261240 265886 NC_000014.9 scf81 96.38 True fake: scaffold gap size wrong estimation (local) 82914253 82922269 266865 274847 NC_000014.9 scf81 99.53 True fake: scaffold gap size wrong estimation (local) 82922174 82925969 275550 279346 NC_000014.9 scf81 99.89 True fake: scaffold gap size wrong estimation (local) 82925874 82930809 280065 285844 NC_000014.9 scf81 99.9 True fake: scaffold gap size wrong estimation (local) 82930714 82936066 286592 291948 NC_000014.9 scf81 99.87 True fake: scaffold gap size wrong estimation (local) 82935997 82939468 293141 296678 NC_000014.9 scf81 97.6 True fake: scaffold gap size wrong estimation (local) 82939390 82945277 297478 303970 NC_000014.9 scf81 95.47 True fake: scaffold gap size wrong estimation (local) 82945181 82946630 304809 306258 NC_000014.9 scf81 99.79 True local misassembly 82946894 82948265 306361 307732 NC_000014.9 scf81 99.71 True fake: scaffold gap size wrong estimation (local) 82948197 82950213 308574 310590 NC_000014.9 scf81 99.85 True fake: scaffold gap size wrong estimation (local) 82950357 82961436 311568 323381 NC_000014.9 scf81 99.75 True fake: scaffold gap size wrong estimation (local) 82961340 82965649 324032 329258 NC_000014.9 scf81 99.95 True fake: scaffold gap size wrong estimation (local) 82965557 82985005 330838 350326 NC_000014.9 scf81 99.74 True fake: scaffold gap size wrong estimation (local) 82985104 82989825 351178 355899 NC_000014.9 scf81 99.96 True fake: scaffold gap size wrong estimation (local) 82990020 82993990 356787 360760 NC_000014.9 scf81 99.9 True fake: scaffold gap size wrong estimation (local) 82993902 83003007 361366 370471 NC_000014.9 scf81 99.92 True fake: scaffold gap size wrong estimation (local) 83003206 83015532 371443 383768 NC_000014.9 scf81 99.84 True fake: scaffold gap size wrong estimation (local) 83015455 83020350 384566 389255 NC_000014.9 scf81 95.65 True fake: scaffold gap size wrong estimation (local) 83020259 83023080 389903 392724 NC_000014.9 scf81 99.93 True fake: scaffold gap size wrong estimation (local) 83022987 83025773 393447 396233 NC_000014.9 scf81 99.93 True fake: scaffold gap size wrong estimation (local) 83025679 83032491 396902 403710 NC_000014.9 scf81 99.9 True fake: scaffold gap size wrong estimation (local) 83032395 83053303 404405 426130 NC_000014.9 scf81 99.5 True fake: scaffold gap size wrong estimation (local) 83053210 83060117 426786 433693 NC_000014.9 scf81 99.94 True fake: scaffold gap size wrong estimation (local) 83060431 83063928 434733 438248 NC_000014.9 scf81 99.12 True fake: scaffold gap size wrong estimation (local) 83063829 83065743 438846 440859 NC_000014.9 scf81 95.84 True fake: scaffold gap size wrong estimation (local) 83065599 83072290 441521 448219 NC_000014.9 scf81 98.81 True fake: scaffold gap size wrong estimation (local) 83072193 83074701 450352 452896 NC_000014.9 scf81 98.31 True fake: scaffold gap size wrong estimation (local) 83074624 83076597 453701 455674 NC_000014.9 scf81 99.9 True fake: scaffold gap size wrong estimation (local) 83076498 83079943 456319 459726 NC_000014.9 scf81 98.61 True fake: scaffold gap size wrong estimation (local) 83079847 83081898 460481 462532 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 83081804 83092344 463227 473751 NC_000014.9 scf81 99.74 True fake: scaffold gap size wrong estimation (local) 83092936 83095486 475121 477637 NC_000014.9 scf81 98.28 True fake: scaffold gap size wrong estimation (local) 83095396 83100732 478285 483621 NC_000014.9 scf81 99.94 True fake: scaffold gap size wrong estimation (local) 83100852 83107180 484509 491603 NC_000014.9 scf81 99.26 True fake: scaffold gap size wrong estimation (local) 83107082 83114365 492226 499509 NC_000014.9 scf81 99.97 True fake: scaffold gap size wrong estimation (local) 83114376 83115189 500429 501242 NC_000014.9 scf81 100.0 True local misassembly 83115405 83116124 501243 501962 NC_000014.9 scf81 99.86 True fake: scaffold gap size wrong estimation (local) 83116127 83118372 503111 505356 NC_000014.9 scf81 100.0 True fake: scaffold gap size wrong estimation (local) 83118275 83124171 506126 512022 NC_000014.9 scf81 99.98 True fake: scaffold gap size wrong estimation (local) 83124075 83148621 512675 537968 NC_000014.9 scf81 99.73 True fake: scaffold gap size wrong estimation (local) 83148535 83169493 538656 559609 NC_000014.9 scf81 99.79 True fake: scaffold gap size wrong estimation (local) 83171322 83178792 561922 569392 NC_000014.9 scf81 99.76 True fake: scaffold gap size wrong estimation (local) 83178694 83180867 570083 572253 NC_000014.9 scf81 99.63 True fake: scaffold gap size wrong estimation (local) 83180770 83186492 572980 578703 NC_000014.9 scf81 99.86 True fake: scaffold gap size wrong estimation (local) 83186613 83193607 579535 586527 NC_000014.9 scf81 99.8 True fake: scaffold gap size wrong estimation (local) 83193510 83201547 587290 596175 NC_000014.9 scf81 99.83 True CONTIG scf81 596175 correct 48702418 48710698 1 9899 NC_000014.9 scf82 99.0 True fake: scaffold gap size wrong estimation (local) 48711487 48726596 11674 26777 NC_000014.9 scf82 99.9 True fake: scaffold gap size wrong estimation (local) 48726503 48728898 27450 29846 NC_000014.9 scf82 99.96 True fake: scaffold gap size wrong estimation (local) 48728885 48743219 30919 45610 NC_000014.9 scf82 97.03 True fake: scaffold gap size wrong estimation (local) 48743121 48746377 46270 49526 NC_000014.9 scf82 99.97 True fake: scaffold gap size wrong estimation (local) 48746280 48767028 50905 72456 NC_000014.9 scf82 99.62 True fake: scaffold gap size wrong estimation (local) 48766936 48773593 73088 79747 NC_000014.9 scf82 99.86 True fake: scaffold gap size wrong estimation (local) 48773679 48776827 80608 83755 NC_000014.9 scf82 99.84 True fake: scaffold gap size wrong estimation (local) 48776734 48778558 84512 86336 NC_000014.9 scf82 99.89 True local misassembly 48778779 48779314 86431 86966 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48780130 48784188 88560 92618 NC_000014.9 scf82 99.83 True fake: scaffold gap size wrong estimation (local) 48784357 48794858 93556 104066 NC_000014.9 scf82 99.74 True fake: scaffold gap size wrong estimation (local) 48795661 48796296 105760 106395 NC_000014.9 scf82 100.0 True local misassembly 48796714 48797288 106520 107094 NC_000014.9 scf82 99.83 True indel: indel (<= 5bp) 48797289 48798289 107097 108097 NC_000014.9 scf82 99.5 True fake: scaffold gap size wrong estimation (local) 48798694 48799684 109200 110190 NC_000014.9 scf82 99.8 True fake: scaffold gap size wrong estimation (local) 48799586 48804874 111038 116326 NC_000014.9 scf82 99.87 True fake: scaffold gap size wrong estimation (local) 48804790 48808164 116995 120369 NC_000014.9 scf82 99.94 True fake: scaffold gap size wrong estimation (local) 48808301 48822409 121259 135360 NC_000014.9 scf82 99.77 True fake: scaffold gap size wrong estimation (local) 48822562 48829966 136252 143651 NC_000014.9 scf82 99.64 True fake: scaffold gap size wrong estimation (local) 48830262 48862216 144761 178956 NC_000014.9 scf82 99.61 True fake: scaffold gap size wrong estimation (local) 48862150 48872923 179613 191210 NC_000014.9 scf82 99.96 True fake: scaffold gap size wrong estimation (local) 48873566 48878167 193593 198194 NC_000014.9 scf82 99.98 True local misassembly 48878470 48879039 198365 198934 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48879040 48881316 199800 202076 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48882322 48888902 203956 210534 NC_000014.9 scf82 99.92 True fake: scaffold gap size wrong estimation (local) 48889064 48905795 211482 228217 NC_000014.9 scf82 99.95 True fake: scaffold gap size wrong estimation (local) 48905706 48909484 228848 232626 NC_000014.9 scf82 99.92 True fake: scaffold gap size wrong estimation (local) 48909393 48911256 233359 235222 NC_000014.9 scf82 99.89 True fake: scaffold gap size wrong estimation (local) 48911161 48913478 236031 238348 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48913405 48921088 239068 247453 NC_000014.9 scf82 99.74 True fake: scaffold gap size wrong estimation (local) 48921326 48933716 248467 261660 NC_000014.9 scf82 99.95 True fake: scaffold gap size wrong estimation (local) 48933763 48934332 262698 263267 NC_000014.9 scf82 100.0 True local misassembly 48934446 48936009 263268 264831 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48936155 48938462 265846 268150 NC_000014.9 scf82 99.87 True fake: scaffold gap size wrong estimation (local) 48938982 48940741 270556 272315 NC_000014.9 scf82 100.0 True fake: scaffold gap size wrong estimation (local) 48941303 48977105 274866 311488 NC_000014.9 scf82 99.63 True CONTIG scf82 311488 correct 86474947 86476163 6 1223 NC_000014.9 scf83 99.75 True fake: scaffold gap size wrong estimation (local) 86476080 86480696 2042 6658 NC_000014.9 scf83 99.85 True fake: scaffold gap size wrong estimation (local) 86480599 86483657 7376 10440 NC_000014.9 scf83 99.64 True fake: scaffold gap size wrong estimation (local) 86483564 86517558 11067 45809 NC_000014.9 scf83 99.72 True fake: scaffold gap size wrong estimation (local) 86517468 86537547 46491 68083 NC_000014.9 scf83 99.51 True fake: scaffold gap size wrong estimation (local) 86537456 86548326 68919 79819 NC_000014.9 scf83 99.05 True fake: scaffold gap size wrong estimation (local) 86548230 86549369 80380 81519 NC_000014.9 scf83 100.0 True CONTIG scf83 81519 correct 37955910 37957938 6 2034 NC_000014.9 scf84 100.0 True fake: scaffold gap size wrong estimation (local) 37957857 37965645 2780 10564 NC_000014.9 scf84 99.95 True fake: scaffold gap size wrong estimation (local) 37965553 37984962 11301 32277 NC_000014.9 scf84 99.98 True fake: scaffold gap size wrong estimation (local) 37984877 38000382 32935 49930 NC_000014.9 scf84 99.9 True fake: scaffold gap size wrong estimation (local) 38000303 38008944 50615 59248 NC_000014.9 scf84 99.88 True fake: scaffold gap size wrong estimation (local) 38009076 38010042 59974 60940 NC_000014.9 scf84 100.0 True fake: scaffold gap size wrong estimation (local) 38010203 38017779 62077 69653 NC_000014.9 scf84 99.95 True fake: scaffold gap size wrong estimation (local) 38017685 38033509 70293 86116 NC_000014.9 scf84 99.99 True fake: scaffold gap size wrong estimation (local) 38033674 38056905 86996 110227 NC_000014.9 scf84 100.0 True fake: scaffold gap size wrong estimation (local) 38058804 38060253 112755 114204 NC_000014.9 scf84 100.0 True fake: scaffold gap size wrong estimation (local) 38060155 38070152 114928 124925 NC_000014.9 scf84 99.98 True fake: scaffold gap size wrong estimation (local) 38070107 38075523 125628 131045 NC_000014.9 scf84 99.94 True fake: scaffold gap size wrong estimation (local) 38076818 38094871 133044 151875 NC_000014.9 scf84 99.91 True fake: scaffold gap size wrong estimation (local) 38094813 38100240 152624 159116 NC_000014.9 scf84 96.51 True fake: scaffold gap size wrong estimation (local) 38101351 38102484 161019 162152 NC_000014.9 scf84 100.0 True fake: scaffold gap size wrong estimation (local) 38103196 38118391 163646 179622 NC_000014.9 scf84 99.68 True fake: scaffold gap size wrong estimation (local) 38118965 38122102 181008 184145 NC_000014.9 scf84 99.97 True fake: scaffold gap size wrong estimation (local) 38122496 38133341 185291 196144 NC_000014.9 scf84 99.79 True fake: scaffold gap size wrong estimation (local) 38133251 38157728 196827 222083 NC_000014.9 scf84 99.82 True fake: scaffold gap size wrong estimation (local) 38157635 38163725 222681 228771 NC_000014.9 scf84 99.92 True fake: scaffold gap size wrong estimation (local) 38164287 38170104 230094 235909 NC_000014.9 scf84 99.85 True fake: scaffold gap size wrong estimation (local) 38170014 38174325 236513 240826 NC_000014.9 scf84 99.77 True fake: scaffold gap size wrong estimation (local) 38174513 38190728 241763 259442 NC_000014.9 scf84 98.32 True fake: scaffold gap size wrong estimation (local) 38191272 38192150 260792 261670 NC_000014.9 scf84 99.89 True CONTIG scf84 261670 correct 27047961 27053291 37 6241 NC_000014.9 scf85 99.2 True fake: scaffold gap size wrong estimation (local) 27053536 27068929 6356 22617 NC_000014.9 scf85 99.32 True fake: scaffold gap size wrong estimation (local) 27068835 27078764 23208 33133 NC_000014.9 scf85 99.82 True fake: scaffold gap size wrong estimation (local) 27078665 27094976 33808 51395 NC_000014.9 scf85 99.57 True fake: scaffold gap size wrong estimation (local) 27094881 27103377 52023 61336 NC_000014.9 scf85 99.87 True fake: scaffold gap size wrong estimation (local) 27103607 27105021 62412 63826 NC_000014.9 scf85 100.0 True fake: scaffold gap size wrong estimation (local) 27104926 27107769 64610 67453 NC_000014.9 scf85 99.75 True fake: scaffold gap size wrong estimation (local) 27107670 27113149 68108 73590 NC_000014.9 scf85 99.91 True fake: scaffold gap size wrong estimation (local) 27113058 27115338 74291 76582 NC_000014.9 scf85 99.26 True fake: scaffold gap size wrong estimation (local) 27115306 27122857 77409 85723 NC_000014.9 scf85 99.08 True fake: scaffold gap size wrong estimation (local) 27122814 27137685 86512 101220 NC_000014.9 scf85 98.76 True fake: scaffold gap size wrong estimation (local) 27137606 27144024 101854 108273 NC_000014.9 scf85 99.74 True fake: scaffold gap size wrong estimation (local) 27143940 27168423 108961 134225 NC_000014.9 scf85 99.84 True CONTIG scf85 134225 correct 85958829 85970217 12534 1 NC_000014.9 scf86 99.62 True fake: scaffold gap size wrong estimation (local) 85946313 85958700 26589 13430 NC_000014.9 scf86 99.71 True fake: scaffold gap size wrong estimation (local) 85944486 85946067 29257 27676 NC_000014.9 scf86 99.81 True fake: scaffold gap size wrong estimation (local) 85937570 85944580 36980 29967 NC_000014.9 scf86 99.47 True relocation, inconsistency = 26719832 59203169 59217737 36981 53086 NC_000014.9 scf86 99.64 True fake: scaffold gap size wrong estimation (local) 59217938 59225046 53954 61063 NC_000014.9 scf86 99.93 True fake: scaffold gap size wrong estimation (local) 59225017 59227636 61855 64471 NC_000014.9 scf86 99.73 True fake: scaffold gap size wrong estimation (local) 59227543 59235098 65156 73318 NC_000014.9 scf86 99.48 True fake: scaffold gap size wrong estimation (local) 59235313 59272365 74541 114719 NC_000014.9 scf86 99.49 True fake: scaffold gap size wrong estimation (local) 59272605 59288055 115668 131122 NC_000014.9 scf86 99.88 True fake: scaffold gap size wrong estimation (local) 59287956 59303432 131765 147245 NC_000014.9 scf86 99.87 True fake: scaffold gap size wrong estimation (local) 59303333 59322464 148779 167936 NC_000014.9 scf86 99.74 True fake: scaffold gap size wrong estimation (local) 59322653 59323803 168902 170052 NC_000014.9 scf86 99.91 True fake: scaffold gap size wrong estimation (local) 59323705 59350476 170781 198329 NC_000014.9 scf86 99.44 True fake: scaffold gap size wrong estimation (local) 59350380 59354318 198981 202917 NC_000014.9 scf86 99.87 True fake: scaffold gap size wrong estimation (local) 59354229 59360344 203608 209722 NC_000014.9 scf86 99.95 True fake: scaffold gap size wrong estimation (local) 59360251 59377864 210352 229465 NC_000014.9 scf86 99.86 True fake: scaffold gap size wrong estimation (local) 59377765 59384465 230149 236865 NC_000014.9 scf86 99.7 True fake: scaffold gap size wrong estimation (local) 59384376 59387947 237489 241048 NC_000014.9 scf86 99.64 True fake: scaffold gap size wrong estimation (local) 59387854 59396201 241707 250918 NC_000014.9 scf86 99.81 True fake: scaffold gap size wrong estimation (local) 59396893 59397686 252095 252885 NC_000014.9 scf86 99.5 True fake: scaffold gap size wrong estimation (local) 59398008 59400257 254399 256683 NC_000014.9 scf86 98.34 True fake: scaffold gap size wrong estimation (local) 59401913 59402424 259102 259613 NC_000014.9 scf86 99.8 True CONTIG scf86 259630 misassembled 59557523 59569443 1 11923 NC_000014.9 scf87 99.85 True fake: scaffold gap size wrong estimation (local) 59569363 59575646 12690 19842 NC_000014.9 scf87 98.37 True fake: scaffold gap size wrong estimation (local) 59575820 59576436 21316 21932 NC_000014.9 scf87 99.68 True local misassembly 59577490 59579468 22293 24271 NC_000014.9 scf87 99.65 True fake: scaffold gap size wrong estimation (local) 59579369 59580062 25654 26347 NC_000014.9 scf87 98.99 True local misassembly 59580782 59581671 26348 27237 NC_000014.9 scf87 99.89 True fake: scaffold gap size wrong estimation (local) 59581853 59583234 28795 30176 NC_000014.9 scf87 99.86 True local misassembly 59583838 59584751 30185 31098 NC_000014.9 scf87 100.0 True fake: scaffold gap size wrong estimation (local) 59584694 59589253 32678 37240 NC_000014.9 scf87 99.8 True fake: scaffold gap size wrong estimation (local) 59589196 59597937 37964 47474 NC_000014.9 scf87 99.33 True fake: scaffold gap size wrong estimation (local) 59597838 59610841 48206 61213 NC_000014.9 scf87 99.81 True fake: scaffold gap size wrong estimation (local) 59610767 59613852 61939 65039 NC_000014.9 scf87 99.42 True fake: scaffold gap size wrong estimation (local) 59613759 59618326 65764 70345 NC_000014.9 scf87 99.65 True fake: scaffold gap size wrong estimation (local) 59618261 59649208 71108 104201 NC_000014.9 scf87 98.55 True fake: scaffold gap size wrong estimation (local) 59649128 59651636 104840 107348 NC_000014.9 scf87 99.92 True fake: scaffold gap size wrong estimation (local) 59651548 59659717 108072 117022 NC_000014.9 scf87 99.17 True fake: scaffold gap size wrong estimation (local) 59660079 59661354 119608 120915 NC_000014.9 scf87 97.4 True fake: scaffold gap size wrong estimation (local) 59662467 59663023 123022 123578 NC_000014.9 scf87 100.0 True fake: scaffold gap size wrong estimation (local) 59664164 59665298 126126 127299 NC_000014.9 scf87 96.68 True fake: scaffold gap size wrong estimation (local) 59667283 59667940 130042 130699 NC_000014.9 scf87 99.85 True fake: scaffold gap size wrong estimation (local) 59669211 59672741 132713 136240 NC_000014.9 scf87 99.89 True fake: scaffold gap size wrong estimation (local) 59672853 59674750 137187 139084 NC_000014.9 scf87 99.84 True fake: scaffold gap size wrong estimation (local) 59674654 59682601 139802 147775 NC_000014.9 scf87 99.64 True fake: scaffold gap size wrong estimation (local) 59682516 59684862 148449 150795 NC_000014.9 scf87 99.87 True fake: scaffold gap size wrong estimation (local) 59684768 59707798 151496 174523 NC_000014.9 scf87 99.95 True fake: scaffold gap size wrong estimation (local) 59707710 59714343 175206 183597 NC_000014.9 scf87 97.99 True fake: scaffold gap size wrong estimation (local) 59715617 59720834 185714 190934 NC_000014.9 scf87 99.81 True fake: scaffold gap size wrong estimation (local) 59720735 59748303 191635 219939 NC_000014.9 scf87 99.85 True CONTIG scf87 219939 correct 38768515 38771452 1 2938 NC_000014.9 scf88 99.86 True fake: scaffold gap size wrong estimation (local) 38771353 38781019 3612 13278 NC_000014.9 scf88 99.9 True fake: scaffold gap size wrong estimation (local) 38780920 38783392 13986 16458 NC_000014.9 scf88 99.96 True fake: scaffold gap size wrong estimation (local) 38783575 38787545 16907 21381 NC_000014.9 scf88 98.51 True fake: scaffold gap size wrong estimation (local) 38787960 38810459 22552 45050 NC_000014.9 scf88 99.96 True fake: scaffold gap size wrong estimation (local) 38811265 38815497 46630 50862 NC_000014.9 scf88 100.0 True fake: scaffold gap size wrong estimation (local) 38815401 38827617 51499 65211 NC_000014.9 scf88 98.26 True fake: scaffold gap size wrong estimation (local) 38827518 38831347 65876 69703 NC_000014.9 scf88 99.95 True fake: scaffold gap size wrong estimation (local) 38831541 38835150 70612 75069 NC_000014.9 scf88 98.09 True fake: scaffold gap size wrong estimation (local) 38835054 38839299 75983 80224 NC_000014.9 scf88 99.91 True fake: scaffold gap size wrong estimation (local) 38839212 38844029 80852 85668 NC_000014.9 scf88 99.98 True fake: scaffold gap size wrong estimation (local) 38843946 38846031 86392 88477 NC_000014.9 scf88 99.95 True fake: scaffold gap size wrong estimation (local) 38845935 38855307 89152 98530 NC_000014.9 scf88 99.81 True fake: scaffold gap size wrong estimation (local) 38855214 38858163 99218 102095 NC_000014.9 scf88 97.53 True fake: scaffold gap size wrong estimation (local) 38858075 38871445 102759 116129 NC_000014.9 scf88 99.94 True fake: scaffold gap size wrong estimation (local) 38871353 38877083 116796 122526 NC_000014.9 scf88 99.93 True fake: scaffold gap size wrong estimation (local) 38877348 38880072 123554 126279 NC_000014.9 scf88 99.78 True fake: scaffold gap size wrong estimation (local) 38879995 38896881 127009 144618 NC_000014.9 scf88 99.33 True fake: scaffold gap size wrong estimation (local) 38896793 38899345 145289 147841 NC_000014.9 scf88 99.96 True fake: scaffold gap size wrong estimation (local) 38899252 38922260 148508 171518 NC_000014.9 scf88 99.97 True fake: scaffold gap size wrong estimation (local) 38922549 38923178 173427 174088 NC_000014.9 scf88 95.17 True CONTIG scf88 174088 correct 47177559 47198374 4 20817 NC_000014.9 scf89 99.96 True fake: scaffold gap size wrong estimation (local) 47198529 47225185 21770 49129 NC_000014.9 scf89 99.95 True fake: scaffold gap size wrong estimation (local) 47225706 47226263 50718 51275 NC_000014.9 scf89 99.82 True local misassembly 47226546 47227168 51276 51898 NC_000014.9 scf89 100.0 True fake: scaffold gap size wrong estimation (local) 47227073 47239220 53171 66095 NC_000014.9 scf89 99.61 True fake: scaffold gap size wrong estimation (local) 47239129 47246907 66854 75415 NC_000014.9 scf89 98.47 True fake: scaffold gap size wrong estimation (local) 47246812 47249279 76157 78658 NC_000014.9 scf89 98.36 True fake: scaffold gap size wrong estimation (local) 47249227 47255238 79368 85379 NC_000014.9 scf89 99.9 True fake: scaffold gap size wrong estimation (local) 47255335 47265715 86225 96605 NC_000014.9 scf89 99.95 True fake: scaffold gap size wrong estimation (local) 47265616 47268303 97291 99978 NC_000014.9 scf89 99.96 True fake: scaffold gap size wrong estimation (local) 47268210 47270792 100699 103281 NC_000014.9 scf89 99.96 True fake: scaffold gap size wrong estimation (local) 47270704 47284273 103966 118718 NC_000014.9 scf89 99.22 True fake: scaffold gap size wrong estimation (local) 47284176 47286165 119854 121843 NC_000014.9 scf89 99.9 True fake: scaffold gap size wrong estimation (local) 47287170 47289383 123477 125686 NC_000014.9 scf89 99.59 True fake: scaffold gap size wrong estimation (local) 47289309 47291559 126465 128715 NC_000014.9 scf89 99.78 True fake: scaffold gap size wrong estimation (local) 47291461 47298701 129513 136771 NC_000014.9 scf89 99.35 True fake: scaffold gap size wrong estimation (local) 47298875 47307608 137692 146406 NC_000014.9 scf89 99.51 True fake: scaffold gap size wrong estimation (local) 47307718 47326776 147266 166307 NC_000014.9 scf89 99.54 True fake: scaffold gap size wrong estimation (local) 47326687 47344890 166959 186729 NC_000014.9 scf89 99.18 True fake: scaffold gap size wrong estimation (local) 47344803 47351080 187404 193681 NC_000014.9 scf89 99.9 True fake: scaffold gap size wrong estimation (local) 47351234 47359151 194630 202538 NC_000014.9 scf89 99.86 True fake: scaffold gap size wrong estimation (local) 47359655 47361253 203795 205387 NC_000014.9 scf89 99.62 True fake: scaffold gap size wrong estimation (local) 47361189 47363342 207697 209851 NC_000014.9 scf89 99.86 True fake: scaffold gap size wrong estimation (local) 47363301 47365836 210673 213208 NC_000014.9 scf89 99.96 True fake: scaffold gap size wrong estimation (local) 47365745 47378665 214058 228526 NC_000014.9 scf89 98.02 True CONTIG scf89 230461 correct 80250895 80253354 1 2460 NC_000014.9 scf90 99.92 True fake: scaffold gap size wrong estimation (local) 80253256 80274267 3066 24858 NC_000014.9 scf90 99.85 True fake: scaffold gap size wrong estimation (local) 80274456 80284338 25807 35696 NC_000014.9 scf90 99.88 True fake: scaffold gap size wrong estimation (local) 80284556 80285960 36715 38119 NC_000014.9 scf90 99.93 True fake: scaffold gap size wrong estimation (local) 80287544 80294121 40378 46955 NC_000014.9 scf90 99.95 True fake: scaffold gap size wrong estimation (local) 80294035 80296362 47647 49974 NC_000014.9 scf90 100.0 True fake: scaffold gap size wrong estimation (local) 80297900 80306296 52892 61288 NC_000014.9 scf90 99.95 True fake: scaffold gap size wrong estimation (local) 80306206 80320272 61991 76101 NC_000014.9 scf90 99.63 True fake: scaffold gap size wrong estimation (local) 80320389 80322125 77049 78785 NC_000014.9 scf90 100.0 True fake: scaffold gap size wrong estimation (local) 80322229 80329627 79713 87134 NC_000014.9 scf90 99.66 True fake: scaffold gap size wrong estimation (local) 80329540 80339589 87739 97790 NC_000014.9 scf90 99.9 True fake: scaffold gap size wrong estimation (local) 80339498 80349318 98497 109088 NC_000014.9 scf90 99.89 True fake: scaffold gap size wrong estimation (local) 80349236 80367793 109768 129062 NC_000014.9 scf90 99.7 True fake: scaffold gap size wrong estimation (local) 80369425 80376301 131220 138096 NC_000014.9 scf90 99.8 True fake: scaffold gap size wrong estimation (local) 80376213 80380343 138733 142862 NC_000014.9 scf90 99.93 True fake: scaffold gap size wrong estimation (local) 80380246 80384259 143550 147563 NC_000014.9 scf90 99.98 True fake: scaffold gap size wrong estimation (local) 80384165 80387041 148223 151099 NC_000014.9 scf90 100.0 True fake: scaffold gap size wrong estimation (local) 80386943 80390089 151847 154993 NC_000014.9 scf90 99.97 True fake: scaffold gap size wrong estimation (local) 80390267 80400872 155901 166506 NC_000014.9 scf90 99.96 True fake: scaffold gap size wrong estimation (local) 80400785 80401629 167629 168473 NC_000014.9 scf90 100.0 True fake: scaffold gap size wrong estimation (local) 80401534 80410605 169315 178380 NC_000014.9 scf90 99.85 True fake: scaffold gap size wrong estimation (local) 80410515 80423196 179039 192432 NC_000014.9 scf90 99.94 True fake: scaffold gap size wrong estimation (local) 80423138 80448871 193222 219511 NC_000014.9 scf90 98.87 True CONTIG scf90 219531 correct 99540009 99547663 1407 9060 NC_000014.9 scf91 99.97 True fake: scaffold gap size wrong estimation (local) 99547600 99556388 9745 19283 NC_000014.9 scf91 99.69 True fake: scaffold gap size wrong estimation (local) 99556290 99558578 20042 22283 NC_000014.9 scf91 97.95 True fake: scaffold gap size wrong estimation (local) 99558504 99583527 23133 49728 NC_000014.9 scf91 99.37 True fake: scaffold gap size wrong estimation (local) 99583812 99603404 50757 71091 NC_000014.9 scf91 99.82 True fake: scaffold gap size wrong estimation (local) 99603407 99604043 72016 72652 NC_000014.9 scf91 100.0 True fake: scaffold gap size wrong estimation (local) 99604292 99613797 72786 84939 NC_000014.9 scf91 99.12 True fake: scaffold gap size wrong estimation (local) 99613702 99628440 85626 101937 NC_000014.9 scf91 99.34 True fake: scaffold gap size wrong estimation (local) 99628346 99639725 102613 114728 NC_000014.9 scf91 99.05 True fake: scaffold gap size wrong estimation (local) 99639630 99642037 116090 118527 NC_000014.9 scf91 98.65 True fake: scaffold gap size wrong estimation (local) 99642531 99647738 119737 124944 NC_000014.9 scf91 99.79 True fake: scaffold gap size wrong estimation (local) 99647644 99656773 125651 135623 NC_000014.9 scf91 99.66 True relocation, inconsistency = -74163459 25493316 25504223 135625 147304 NC_000014.9 scf91 99.64 True fake: scaffold gap size wrong estimation (local) 25504124 25515212 147972 159080 NC_000014.9 scf91 99.77 True fake: scaffold gap size wrong estimation (local) 25515397 25520074 160147 164635 NC_000014.9 scf91 95.92 True fake: scaffold gap size wrong estimation (local) 25520215 25523813 165526 169122 NC_000014.9 scf91 99.86 True fake: scaffold gap size wrong estimation (local) 25523948 25544546 169960 191319 NC_000014.9 scf91 99.74 True fake: scaffold gap size wrong estimation (local) 25544452 25558716 191995 206250 NC_000014.9 scf91 99.71 True fake: scaffold gap size wrong estimation (local) 25558620 25581533 206934 229855 NC_000014.9 scf91 99.8 True fake: scaffold gap size wrong estimation (local) 25581626 25583227 230762 232363 NC_000014.9 scf91 99.88 True fake: scaffold gap size wrong estimation (local) 25583215 25591278 233350 242455 NC_000014.9 scf91 97.74 True fake: scaffold gap size wrong estimation (local) 25592307 25594003 244198 245937 NC_000014.9 scf91 97.53 True fake: scaffold gap size wrong estimation (local) 25593912 25606433 246674 259193 NC_000014.9 scf91 99.97 True fake: scaffold gap size wrong estimation (local) 25606540 25616194 260039 269686 NC_000014.9 scf91 99.76 True fake: scaffold gap size wrong estimation (local) 25616095 25645309 270321 301128 NC_000014.9 scf91 99.25 True fake: scaffold gap size wrong estimation (local) 25645211 25665677 301868 323064 NC_000014.9 scf91 99.75 True fake: scaffold gap size wrong estimation (local) 25665581 25667571 323862 325852 NC_000014.9 scf91 99.85 True fake: scaffold gap size wrong estimation (local) 25667476 25671068 326631 330223 NC_000014.9 scf91 99.94 True fake: scaffold gap size wrong estimation (local) 25671360 25677915 331228 337783 NC_000014.9 scf91 99.91 True fake: scaffold gap size wrong estimation (local) 25678165 25678742 338840 339417 NC_000014.9 scf91 99.83 True indel: indel (> 5bp) 25678821 25679526 339418 340123 NC_000014.9 scf91 100.0 True fake: scaffold gap size wrong estimation (local) 25679438 25688667 340997 351152 NC_000014.9 scf91 98.43 True fake: scaffold gap size wrong estimation (local) 25688864 25698596 352080 361812 NC_000014.9 scf91 99.93 True fake: scaffold gap size wrong estimation (local) 25698512 25703133 362468 367089 NC_000014.9 scf91 99.96 True fake: scaffold gap size wrong estimation (local) 25704368 25707796 368983 372413 NC_000014.9 scf91 99.65 True fake: scaffold gap size wrong estimation (local) 25707719 25718264 373017 386325 NC_000014.9 scf91 96.43 True fake: scaffold gap size wrong estimation (local) 25720148 25720757 387987 388596 NC_000014.9 scf91 99.51 True fake: scaffold gap size wrong estimation (local) 25720693 25727538 389560 396436 NC_000014.9 scf91 99.45 True fake: scaffold gap size wrong estimation (local) 25727991 25729642 397630 399281 NC_000014.9 scf91 99.82 True fake: scaffold gap size wrong estimation (local) 25729562 25731685 400103 402227 NC_000014.9 scf91 99.76 True local misassembly 25731875 25735888 402228 407380 NC_000014.9 scf91 99.75 True fake: scaffold gap size wrong estimation (local) 25735790 25745082 408307 418395 NC_000014.9 scf91 99.74 True fake: scaffold gap size wrong estimation (local) 25745665 25761017 419736 435067 NC_000014.9 scf91 99.74 True fake: scaffold gap size wrong estimation (local) 25760923 25771410 435760 446181 NC_000014.9 scf91 99.35 True CONTIG scf91 446181 misassembled 85971235 85972127 412 1304 NC_000014.9 scf92 97.31 True fake: scaffold gap size wrong estimation (local) 85972126 85972736 2441 3070 NC_000014.9 scf92 96.98 True fake: scaffold gap size wrong estimation (local) 85973030 85973860 3181 4011 NC_000014.9 scf92 100.0 True local misassembly 85973982 85974525 4012 4555 NC_000014.9 scf92 99.45 True fake: scaffold gap size wrong estimation (local) 85974527 85977313 5513 8299 NC_000014.9 scf92 99.96 True fake: scaffold gap size wrong estimation (local) 85977224 85985770 8994 17540 NC_000014.9 scf92 99.82 True fake: scaffold gap size wrong estimation (local) 85985905 85998808 18367 31271 NC_000014.9 scf92 99.86 True fake: scaffold gap size wrong estimation (local) 85998734 86000694 32012 33972 NC_000014.9 scf92 99.85 True local misassembly 86001000 86024744 34051 59433 NC_000014.9 scf92 99.71 True fake: scaffold gap size wrong estimation (local) 86025828 86046258 61255 83589 NC_000014.9 scf92 98.28 True fake: scaffold gap size wrong estimation (local) 86046342 86058189 84560 96407 NC_000014.9 scf92 99.97 True fake: scaffold gap size wrong estimation (local) 86058097 86064780 97086 103768 NC_000014.9 scf92 99.94 True fake: scaffold gap size wrong estimation (local) 86064702 86068514 104445 108257 NC_000014.9 scf92 99.92 True fake: scaffold gap size wrong estimation (local) 86068429 86074588 108958 115914 NC_000014.9 scf92 99.79 True CONTIG scf92 115914 correct 45929033 45951223 1 22191 NC_000014.9 scf93 99.87 True fake: scaffold gap size wrong estimation (local) 45951135 45965331 22817 37012 NC_000014.9 scf93 99.85 True fake: scaffold gap size wrong estimation (local) 45965245 45988114 37616 60484 NC_000014.9 scf93 99.8 True fake: scaffold gap size wrong estimation (local) 45988041 45991132 61175 64266 NC_000014.9 scf93 99.87 True CONTIG scf93 64266 correct 30480053 30488217 1 8165 NC_000014.9 scf94 99.96 True fake: scaffold gap size wrong estimation (local) 30488170 30491655 8818 12303 NC_000014.9 scf94 99.94 True fake: scaffold gap size wrong estimation (local) 30492166 30514860 13561 37019 NC_000014.9 scf94 99.75 True fake: scaffold gap size wrong estimation (local) 30514762 30523140 37732 46699 NC_000014.9 scf94 99.98 True fake: scaffold gap size wrong estimation (local) 30523046 30532758 47372 57081 NC_000014.9 scf94 99.95 True fake: scaffold gap size wrong estimation (local) 30532674 30538690 57786 63802 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30538899 30557975 64870 85302 NC_000014.9 scf94 98.77 True fake: scaffold gap size wrong estimation (local) 30558114 30576991 86219 106530 NC_000014.9 scf94 98.87 True fake: scaffold gap size wrong estimation (local) 30577226 30580299 107545 110618 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30580444 30584846 111551 115953 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30584942 30591188 116725 122971 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30591090 30594502 123652 127064 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30594828 30598223 128163 131558 NC_000014.9 scf94 99.97 True fake: scaffold gap size wrong estimation (local) 30599310 30604680 133325 138695 NC_000014.9 scf94 100.0 True fake: scaffold gap size wrong estimation (local) 30604583 30605143 140067 140641 NC_000014.9 scf94 97.57 True fake: scaffold gap size wrong estimation (local) 30605054 30658565 141689 198414 NC_000014.9 scf94 99.72 True fake: scaffold gap size wrong estimation (local) 30658496 30665000 199144 205648 NC_000014.9 scf94 99.98 True CONTIG scf94 205648 correct 36697821 36708763 3270 15864 NC_000014.9 scf95 98.48 True fake: scaffold gap size wrong estimation (local) 36708745 36713507 16615 21377 NC_000014.9 scf95 99.94 True fake: scaffold gap size wrong estimation (local) 36713419 36716134 22079 24794 NC_000014.9 scf95 99.96 True fake: scaffold gap size wrong estimation (local) 36716044 36721036 25505 30497 NC_000014.9 scf95 99.92 True fake: scaffold gap size wrong estimation (local) 36720937 36727675 31161 38660 NC_000014.9 scf95 99.82 True fake: scaffold gap size wrong estimation (local) 36727583 36731053 39373 42843 NC_000014.9 scf95 99.94 True fake: scaffold gap size wrong estimation (local) 36731141 36733099 43701 45659 NC_000014.9 scf95 99.95 True fake: scaffold gap size wrong estimation (local) 36733020 36736029 46442 49451 NC_000014.9 scf95 99.93 True fake: scaffold gap size wrong estimation (local) 36736145 36745220 50385 59460 NC_000014.9 scf95 99.96 True fake: scaffold gap size wrong estimation (local) 36745554 36755622 60561 70637 NC_000014.9 scf95 99.83 True fake: scaffold gap size wrong estimation (local) 36755579 36757096 71396 72913 NC_000014.9 scf95 100.0 True fake: scaffold gap size wrong estimation (local) 36757397 36759822 74071 76495 NC_000014.9 scf95 99.92 True fake: scaffold gap size wrong estimation (local) 36759726 36769851 77197 88103 NC_000014.9 scf95 99.52 True fake: scaffold gap size wrong estimation (local) 36769953 36776233 88955 95235 NC_000014.9 scf95 99.92 True fake: scaffold gap size wrong estimation (local) 36776299 36776815 96268 96784 NC_000014.9 scf95 99.81 True fake: scaffold gap size wrong estimation (local) 36777074 36778539 96921 98386 NC_000014.9 scf95 99.66 True fake: scaffold gap size wrong estimation (local) 36778468 36779105 99911 100548 NC_000014.9 scf95 99.84 True fake: scaffold gap size wrong estimation (local) 36779589 36782772 102100 105275 NC_000014.9 scf95 99.62 True fake: scaffold gap size wrong estimation (local) 36782872 36789670 106157 112955 NC_000014.9 scf95 99.97 True fake: scaffold gap size wrong estimation (local) 36789981 36793934 113995 117948 NC_000014.9 scf95 100.0 True fake: scaffold gap size wrong estimation (local) 36793846 36814768 118591 139562 NC_000014.9 scf95 99.69 True fake: scaffold gap size wrong estimation (local) 36814901 36839750 140424 166051 NC_000014.9 scf95 99.47 True fake: scaffold gap size wrong estimation (local) 36839657 36862054 166724 189120 NC_000014.9 scf95 99.98 True fake: scaffold gap size wrong estimation (local) 36862473 36871338 191197 200101 NC_000014.9 scf95 99.34 True fake: scaffold gap size wrong estimation (local) 36871241 36877726 200742 207228 NC_000014.9 scf95 99.68 True fake: scaffold gap size wrong estimation (local) 36877627 36882276 207940 212587 NC_000014.9 scf95 99.72 True fake: scaffold gap size wrong estimation (local) 36882180 36892651 213274 223744 NC_000014.9 scf95 99.71 True CONTIG scf95 223744 correct 87135623 87138143 16 2536 NC_000014.9 scf96 99.92 True fake: scaffold gap size wrong estimation (local) 87138044 87145571 3327 11548 NC_000014.9 scf96 96.58 True fake: scaffold gap size wrong estimation (local) 87145474 87155285 12265 22842 NC_000014.9 scf96 99.57 True fake: scaffold gap size wrong estimation (local) 87155481 87167296 23767 36362 NC_000014.9 scf96 99.72 True fake: scaffold gap size wrong estimation (local) 87167479 87198907 37333 71131 NC_000014.9 scf96 99.65 True fake: scaffold gap size wrong estimation (local) 87199192 87222350 72103 96150 NC_000014.9 scf96 99.9 True fake: scaffold gap size wrong estimation (local) 87222456 87234895 97244 110424 NC_000014.9 scf96 99.89 True CONTIG scf96 110424 correct 51417987 51437209 1 19265 NC_000014.9 scf97 99.61 True fake: scaffold gap size wrong estimation (local) 51437462 51442702 20270 25511 NC_000014.9 scf97 99.79 True fake: scaffold gap size wrong estimation (local) 51442617 51444067 26168 27618 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51443974 51456588 28561 42195 NC_000014.9 scf97 97.29 True fake: scaffold gap size wrong estimation (local) 51456489 51459715 42832 46058 NC_000014.9 scf97 99.94 True fake: scaffold gap size wrong estimation (local) 51459839 51467093 46931 54185 NC_000014.9 scf97 99.96 True fake: scaffold gap size wrong estimation (local) 51468302 51469090 56164 56952 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51469620 51472363 58672 61940 NC_000014.9 scf97 99.3 True fake: scaffold gap size wrong estimation (local) 51472499 51477748 62949 68198 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51477705 51483326 68906 74538 NC_000014.9 scf97 99.7 True fake: scaffold gap size wrong estimation (local) 51483247 51490624 75198 83313 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 51490525 51500846 84027 94360 NC_000014.9 scf97 99.84 True fake: scaffold gap size wrong estimation (local) 51500786 51510755 95047 105744 NC_000014.9 scf97 99.55 True fake: scaffold gap size wrong estimation (local) 51510657 51523494 106370 119206 NC_000014.9 scf97 99.89 True fake: scaffold gap size wrong estimation (local) 51523399 51532266 119871 128720 NC_000014.9 scf97 99.74 True fake: scaffold gap size wrong estimation (local) 51532373 51534268 129640 131535 NC_000014.9 scf97 99.89 True fake: scaffold gap size wrong estimation (local) 51534175 51536078 132371 134274 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51536669 51544180 135649 143160 NC_000014.9 scf97 99.99 True fake: scaffold gap size wrong estimation (local) 51544091 51546453 143889 146250 NC_000014.9 scf97 99.87 True fake: scaffold gap size wrong estimation (local) 51546591 51549671 147164 150245 NC_000014.9 scf97 99.9 True fake: scaffold gap size wrong estimation (local) 51549799 51577667 151172 181501 NC_000014.9 scf97 99.71 True fake: scaffold gap size wrong estimation (local) 51577570 51580226 182193 184849 NC_000014.9 scf97 99.85 True fake: scaffold gap size wrong estimation (local) 51580129 51588374 185506 194584 NC_000014.9 scf97 99.4 True fake: scaffold gap size wrong estimation (local) 51588284 51589858 195489 197062 NC_000014.9 scf97 99.75 True fake: scaffold gap size wrong estimation (local) 51589797 51594341 197882 202423 NC_000014.9 scf97 99.67 True fake: scaffold gap size wrong estimation (local) 51594553 51599195 203433 208068 NC_000014.9 scf97 99.51 True fake: scaffold gap size wrong estimation (local) 51599099 51624124 208778 234536 NC_000014.9 scf97 99.9 True fake: scaffold gap size wrong estimation (local) 51624033 51628810 235205 239997 NC_000014.9 scf97 99.67 True fake: scaffold gap size wrong estimation (local) 51629128 51633446 241036 245354 NC_000014.9 scf97 99.98 True fake: scaffold gap size wrong estimation (local) 51633622 51637558 246300 250249 NC_000014.9 scf97 99.67 True fake: scaffold gap size wrong estimation (local) 51637461 51644469 250952 258883 NC_000014.9 scf97 99.89 True fake: scaffold gap size wrong estimation (local) 51644402 51646272 259630 261500 NC_000014.9 scf97 100.0 True local misassembly 51646493 51647894 261501 262902 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 51647796 51650413 263578 266195 NC_000014.9 scf97 99.96 True fake: scaffold gap size wrong estimation (local) 51651177 51651762 267640 268225 NC_000014.9 scf97 99.83 True local misassembly 51650596 51651274 268989 269667 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51651809 51653645 271465 273301 NC_000014.9 scf97 99.84 True fake: scaffold gap size wrong estimation (local) 51653552 51658487 274009 280044 NC_000014.9 scf97 98.99 True fake: scaffold gap size wrong estimation (local) 51658418 51670133 280832 292547 NC_000014.9 scf97 99.92 True fake: scaffold gap size wrong estimation (local) 51670045 51689366 293333 312535 NC_000014.9 scf97 99.24 True fake: scaffold gap size wrong estimation (local) 51689280 51700117 313264 324007 NC_000014.9 scf97 98.96 True fake: scaffold gap size wrong estimation (local) 51700025 51701306 324811 326092 NC_000014.9 scf97 99.92 True fake: scaffold gap size wrong estimation (local) 51701559 51723720 327145 349329 NC_000014.9 scf97 99.72 True fake: scaffold gap size wrong estimation (local) 51723640 51728672 349992 355024 NC_000014.9 scf97 99.9 True fake: scaffold gap size wrong estimation (local) 51728573 51740170 355655 368009 NC_000014.9 scf97 99.65 True fake: scaffold gap size wrong estimation (local) 51740081 51742190 368718 370827 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 51742373 51745584 371769 376157 NC_000014.9 scf97 99.97 True fake: scaffold gap size wrong estimation (local) 51746745 51759443 379617 392163 NC_000014.9 scf97 98.45 True fake: scaffold gap size wrong estimation (local) 51759856 51762148 393490 395782 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51762051 51764975 396521 399445 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51764887 51769758 400142 405013 NC_000014.9 scf97 99.96 True fake: scaffold gap size wrong estimation (local) 51769668 51771337 406267 407975 NC_000014.9 scf97 96.85 True fake: scaffold gap size wrong estimation (local) 51773715 51774654 410822 411761 NC_000014.9 scf97 100.0 True local misassembly 51775229 51775861 411762 412394 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 51775974 51792742 413960 430721 NC_000014.9 scf97 99.71 True fake: scaffold gap size wrong estimation (local) 51792668 51794696 431459 433486 NC_000014.9 scf97 99.66 True fake: scaffold gap size wrong estimation (local) 51800536 51824133 440999 465488 NC_000014.9 scf97 98.94 True fake: scaffold gap size wrong estimation (local) 51824308 51829844 466405 471941 NC_000014.9 scf97 99.78 True fake: scaffold gap size wrong estimation (local) 51830005 51836875 472898 479768 NC_000014.9 scf97 99.74 True fake: scaffold gap size wrong estimation (local) 51837347 51842749 481048 486301 NC_000014.9 scf97 97.15 True fake: scaffold gap size wrong estimation (local) 51842665 51856035 487171 501979 NC_000014.9 scf97 97.65 True fake: scaffold gap size wrong estimation (local) 51855940 51861699 503333 509088 NC_000014.9 scf97 96.39 True fake: scaffold gap size wrong estimation (local) 51861603 51874441 509814 522651 NC_000014.9 scf97 99.8 True relocation, inconsistency = 41777302 93651744 93657351 528259 522652 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 93642412 93651838 538335 528909 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 93629036 93642235 552479 539275 NC_000014.9 scf97 99.87 True fake: scaffold gap size wrong estimation (local) 93623732 93629127 558550 553155 NC_000014.9 scf97 99.89 True fake: scaffold gap size wrong estimation (local) 93613595 93623831 570280 559250 NC_000014.9 scf97 99.47 True fake: not a misassembly (possible transposable element) 102409867 102410387 571241 570721 NC_000014.9 scf97 100.0 True fake: not a misassembly (possible transposable element) 93598383 93613477 587176 571242 NC_000014.9 scf97 98.76 True fake: scaffold gap size wrong estimation (local) 93595201 93598476 591221 587948 NC_000014.9 scf97 99.88 True fake: scaffold gap size wrong estimation (local) 93592397 93595300 594803 591991 NC_000014.9 scf97 96.87 True fake: scaffold gap size wrong estimation (local) 93588720 93592194 599258 595784 NC_000014.9 scf97 99.97 True fake: scaffold gap size wrong estimation (local) 93585817 93588571 602969 600215 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 93581617 93585909 609124 603896 NC_000014.9 scf97 99.4 True fake: scaffold gap size wrong estimation (local) 93566640 93581510 625579 609977 NC_000014.9 scf97 98.93 True fake: scaffold gap size wrong estimation (local) 93564271 93566715 628762 626381 NC_000014.9 scf97 96.93 True fake: scaffold gap size wrong estimation (local) 93561624 93562299 631930 631255 NC_000014.9 scf97 99.7 True local misassembly 93560781 93561468 632618 631931 NC_000014.9 scf97 99.85 True fake: scaffold gap size wrong estimation (local) 93558638 93560815 636077 633952 NC_000014.9 scf97 97.38 True fake: scaffold gap size wrong estimation (local) 93551251 93558379 645016 637128 NC_000014.9 scf97 99.47 True fake: scaffold gap size wrong estimation (local) 93541960 93551120 655057 646066 NC_000014.9 scf97 97.5 True fake: not a misassembly (possible transposable element) 55209226 55210605 655058 656437 NC_000014.9 scf97 100.0 True fake: not a misassembly (possible transposable element) 93539447 93541372 658363 656438 NC_000014.9 scf97 99.79 True fake: not a misassembly (possible transposable element) 55211694 55213706 658364 660376 NC_000014.9 scf97 99.95 True fake: not a misassembly (possible transposable element) 93536784 93538226 661819 660377 NC_000014.9 scf97 99.93 True fake: not a misassembly (possible transposable element) 55214172 55214957 661826 662610 NC_000014.9 scf97 99.87 True fake: not a misassembly (possible transposable element) 93530867 93536726 668568 662708 NC_000014.9 scf97 99.83 True fake: not a misassembly (possible transposable element) 55219367 55221221 668627 670481 NC_000014.9 scf97 100.0 True fake: not a misassembly (possible transposable element) 93517249 93529751 682985 670482 NC_000014.9 scf97 99.9 True fake: not a misassembly (possible transposable element) 55231258 55232137 682986 683865 NC_000014.9 scf97 100.0 True fake: not a misassembly (possible transposable element) 93516692 93517338 684983 684337 NC_000014.9 scf97 100.0 True local misassembly 93506234 93516194 695468 685511 NC_000014.9 scf97 99.89 True fake: not a misassembly (possible transposable element) 55241327 55243307 695469 697449 NC_000014.9 scf97 100.0 True fake: not a misassembly (possible transposable element) 93502190 93504977 700240 697450 NC_000014.9 scf97 99.82 True relocation, inconsistency = 38255416 55245335 55246773 700241 701679 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 55247013 55251897 702627 708435 NC_000014.9 scf97 98.92 True fake: scaffold gap size wrong estimation (local) 55252125 55258851 709323 717000 NC_000014.9 scf97 98.52 True fake: scaffold gap size wrong estimation (local) 55258807 55259966 717709 718868 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55259896 55269251 719555 729639 NC_000014.9 scf97 99.63 True fake: scaffold gap size wrong estimation (local) 55269175 55271572 730392 732789 NC_000014.9 scf97 99.87 True fake: scaffold gap size wrong estimation (local) 55273238 55273911 735277 735950 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55273830 55280544 737481 744196 NC_000014.9 scf97 99.9 True fake: scaffold gap size wrong estimation (local) 55280684 55282012 745084 746412 NC_000014.9 scf97 99.92 True indel: indel (> 5bp) 55282256 55283278 746686 747708 NC_000014.9 scf97 99.9 True local misassembly 55283874 55284373 747988 748487 NC_000014.9 scf97 99.6 True fake: scaffold gap size wrong estimation (local) 55284593 55293109 749738 759053 NC_000014.9 scf97 99.75 True fake: scaffold gap size wrong estimation (local) 55293015 55295408 759789 762183 NC_000014.9 scf97 99.96 True fake: scaffold gap size wrong estimation (local) 55295543 55306688 763050 775323 NC_000014.9 scf97 98.64 True fake: scaffold gap size wrong estimation (local) 55306594 55318334 776209 787954 NC_000014.9 scf97 99.88 True fake: scaffold gap size wrong estimation (local) 55318440 55321492 788847 791863 NC_000014.9 scf97 96.73 True fake: scaffold gap size wrong estimation (local) 55321411 55322210 792560 793359 NC_000014.9 scf97 99.75 True fake: scaffold gap size wrong estimation (local) 55322312 55322998 793792 794478 NC_000014.9 scf97 99.85 True local misassembly 55323213 55323892 794479 795158 NC_000014.9 scf97 95.59 True fake: scaffold gap size wrong estimation (local) 55323798 55327943 796411 801464 NC_000014.9 scf97 99.88 True fake: scaffold gap size wrong estimation (local) 55327896 55331607 802337 806053 NC_000014.9 scf97 99.84 True fake: scaffold gap size wrong estimation (local) 55331935 55337167 807281 812533 NC_000014.9 scf97 99.49 True fake: scaffold gap size wrong estimation (local) 55337069 55344672 813181 821919 NC_000014.9 scf97 98.31 True fake: scaffold gap size wrong estimation (local) 55344573 55347257 822903 825587 NC_000014.9 scf97 99.85 True fake: scaffold gap size wrong estimation (local) 55347182 55360303 826338 839460 NC_000014.9 scf97 99.89 True fake: scaffold gap size wrong estimation (local) 55360235 55363112 840158 843001 NC_000014.9 scf97 97.31 True fake: scaffold gap size wrong estimation (local) 55363234 55365075 844250 846168 NC_000014.9 scf97 95.37 True fake: scaffold gap size wrong estimation (local) 55365226 55370840 847439 853842 NC_000014.9 scf97 97.69 True fake: scaffold gap size wrong estimation (local) 55370762 55371623 854773 855634 NC_000014.9 scf97 99.88 True local misassembly 55371943 55373004 855635 856696 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 55372924 55377218 857883 863095 NC_000014.9 scf97 99.86 True fake: scaffold gap size wrong estimation (local) 55377138 55379300 863962 866124 NC_000014.9 scf97 99.91 True local misassembly 55379746 55380249 866125 866628 NC_000014.9 scf97 99.8 True indel: indel (<= 5bp) 55380250 55380870 866632 867252 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55380871 55383483 868279 870891 NC_000014.9 scf97 99.92 True fake: scaffold gap size wrong estimation (local) 55383425 55390256 871618 878449 NC_000014.9 scf97 99.97 True fake: scaffold gap size wrong estimation (local) 55390619 55391558 879687 880626 NC_000014.9 scf97 99.89 True local misassembly 55391671 55392642 880627 881598 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55392643 55393188 882056 882601 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55393334 55394069 882807 883542 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55394154 55407228 884624 900048 NC_000014.9 scf97 99.43 True fake: scaffold gap size wrong estimation (local) 55407488 55409570 901041 903123 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55409474 55420906 903849 915309 NC_000014.9 scf97 99.69 True fake: scaffold gap size wrong estimation (local) 55421061 55421815 915745 916499 NC_000014.9 scf97 99.74 True fake: scaffold gap size wrong estimation (local) 55421816 55422578 916879 917641 NC_000014.9 scf97 99.87 True fake: scaffold gap size wrong estimation (local) 55422493 55424697 918320 920524 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 55424620 55426088 921517 922985 NC_000014.9 scf97 100.0 True local misassembly 55426546 55427906 922986 924346 NC_000014.9 scf97 99.93 True fake: scaffold gap size wrong estimation (local) 55428292 55438928 925742 937982 NC_000014.9 scf97 96.82 True fake: scaffold gap size wrong estimation (local) 55439931 55442384 939753 942216 NC_000014.9 scf97 99.47 True fake: scaffold gap size wrong estimation (local) 55442293 55443579 943178 944464 NC_000014.9 scf97 99.77 True local misassembly 55443821 55444417 944465 945061 NC_000014.9 scf97 99.83 True fake: scaffold gap size wrong estimation (local) 55444318 55445597 946327 947606 NC_000014.9 scf97 99.92 True fake: scaffold gap size wrong estimation (local) 55447046 55447634 950003 950591 NC_000014.9 scf97 99.83 True local misassembly 55446091 55447144 950592 951643 NC_000014.9 scf97 99.43 True fake: scaffold gap size wrong estimation (local) 55447776 55455801 953201 961226 NC_000014.9 scf97 99.88 True fake: scaffold gap size wrong estimation (local) 55456945 55461615 963060 967730 NC_000014.9 scf97 99.94 True fake: scaffold gap size wrong estimation (local) 55461706 55462965 968525 969784 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55462884 55467808 970527 976292 NC_000014.9 scf97 99.01 True fake: scaffold gap size wrong estimation (local) 55467721 55470057 977061 979398 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 55469959 55474205 980263 985407 NC_000014.9 scf97 99.95 True fake: scaffold gap size wrong estimation (local) 55474122 55476348 986129 988355 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 55476456 55478777 989286 991605 NC_000014.9 scf97 99.91 True fake: scaffold gap size wrong estimation (local) 55478724 55480757 992415 994448 NC_000014.9 scf97 99.85 True fake: scaffold gap size wrong estimation (local) 55481031 55482816 995628 997413 NC_000014.9 scf97 99.94 True fake: scaffold gap size wrong estimation (local) 55482817 55484373 998604 1000160 NC_000014.9 scf97 98.46 True fake: scaffold gap size wrong estimation (local) 55485951 55486750 1002583 1003382 NC_000014.9 scf97 100.0 True local misassembly 55485391 55485903 1003803 1004315 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55487865 55489371 1007321 1008827 NC_000014.9 scf97 99.87 True fake: scaffold gap size wrong estimation (local) 55490375 55491862 1010669 1012156 NC_000014.9 scf97 100.0 True fake: scaffold gap size wrong estimation (local) 55493418 55494099 1014567 1015248 NC_000014.9 scf97 100.0 True CONTIG scf97 1015248 misassembled 58107746 58124601 1 17692 NC_000014.9 scf98 99.3 True fake: scaffold gap size wrong estimation (local) 58124507 58132748 18282 26675 NC_000014.9 scf98 98.55 True fake: scaffold gap size wrong estimation (local) 58132676 58143786 27359 38469 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58143991 58156050 38585 51497 NC_000014.9 scf98 99.59 True fake: scaffold gap size wrong estimation (local) 58156216 58159102 52388 55364 NC_000014.9 scf98 97.21 True fake: scaffold gap size wrong estimation (local) 58159032 58163566 56484 61911 NC_000014.9 scf98 99.91 True fake: scaffold gap size wrong estimation (local) 58163555 58180818 62658 83005 NC_000014.9 scf98 98.02 True fake: scaffold gap size wrong estimation (local) 58181246 58182071 83655 84480 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58182315 58184992 85172 87847 NC_000014.9 scf98 99.89 True fake: scaffold gap size wrong estimation (local) 58184915 58187236 88651 90971 NC_000014.9 scf98 99.83 True fake: scaffold gap size wrong estimation (local) 58187140 58190533 91733 95121 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58190710 58195154 96059 100502 NC_000014.9 scf98 99.98 True fake: scaffold gap size wrong estimation (local) 58195501 58197247 101660 103406 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58197870 58205143 105999 113893 NC_000014.9 scf98 97.24 True fake: scaffold gap size wrong estimation (local) 58205377 58214633 115043 125096 NC_000014.9 scf98 99.09 True fake: scaffold gap size wrong estimation (local) 58214537 58216044 126143 127718 NC_000014.9 scf98 95.56 True local misassembly 58216574 58217636 127719 128781 NC_000014.9 scf98 99.81 True fake: scaffold gap size wrong estimation (local) 58217628 58224513 130238 137732 NC_000014.9 scf98 95.21 True fake: scaffold gap size wrong estimation (local) 58224438 58229507 138498 144404 NC_000014.9 scf98 98.71 True fake: scaffold gap size wrong estimation (local) 58229651 58230888 145258 146493 NC_000014.9 scf98 99.84 True fake: scaffold gap size wrong estimation (local) 58230968 58232425 146581 148040 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58232566 58234837 148988 151320 NC_000014.9 scf98 97.17 True fake: scaffold gap size wrong estimation (local) 58234997 58240811 152253 158927 NC_000014.9 scf98 99.91 True fake: scaffold gap size wrong estimation (local) 58241313 58242374 160383 161444 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58242326 58246456 162249 166376 NC_000014.9 scf98 99.9 True fake: scaffold gap size wrong estimation (local) 58249159 58250171 171080 172092 NC_000014.9 scf98 99.9 True local misassembly 58250615 58252821 172093 174299 NC_000014.9 scf98 100.0 True indel: indel (<= 5bp) 58252822 58254337 174301 175816 NC_000014.9 scf98 99.87 True fake: scaffold gap size wrong estimation (local) 58254338 58255186 176617 177465 NC_000014.9 scf98 99.29 True fake: scaffold gap size wrong estimation (local) 58255651 58256929 177998 179276 NC_000014.9 scf98 99.77 True fake: scaffold gap size wrong estimation (local) 58257335 58262578 181023 186270 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58262511 58269487 186972 193934 NC_000014.9 scf98 98.72 True fake: scaffold gap size wrong estimation (local) 58269789 58274747 195061 200835 NC_000014.9 scf98 99.38 True fake: scaffold gap size wrong estimation (local) 58274650 58280233 201555 207929 NC_000014.9 scf98 98.99 True fake: scaffold gap size wrong estimation (local) 58280153 58282139 208741 210726 NC_000014.9 scf98 99.95 True fake: scaffold gap size wrong estimation (local) 58282398 58286365 211722 215690 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58286655 58290914 216714 220976 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58290843 58295794 221708 227447 NC_000014.9 scf98 99.59 True fake: scaffold gap size wrong estimation (local) 58295697 58302180 227877 235610 NC_000014.9 scf98 99.16 True fake: scaffold gap size wrong estimation (local) 58302389 58303982 236803 238429 NC_000014.9 scf98 97.6 True fake: scaffold gap size wrong estimation (local) 58303903 58307767 239235 243099 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58307678 58316782 243761 253673 NC_000014.9 scf98 98.86 True fake: scaffold gap size wrong estimation (local) 58317360 58319144 255085 256867 NC_000014.9 scf98 99.78 True fake: scaffold gap size wrong estimation (local) 58319954 58320617 257928 258591 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58320810 58321956 259841 260987 NC_000014.9 scf98 99.91 True indel: indel (<= 5bp) 58321957 58322855 260989 261887 NC_000014.9 scf98 99.78 True fake: scaffold gap size wrong estimation (local) 58323965 58337193 263846 277079 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58337285 58340683 277943 281330 NC_000014.9 scf98 99.68 True fake: scaffold gap size wrong estimation (local) 58340590 58345740 282043 287193 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58345672 58359896 288034 303598 NC_000014.9 scf98 97.88 True fake: scaffold gap size wrong estimation (local) 58359993 58363510 304519 308036 NC_000014.9 scf98 99.97 True fake: scaffold gap size wrong estimation (local) 58363448 58370348 308822 316530 NC_000014.9 scf98 99.31 True fake: scaffold gap size wrong estimation (local) 58370466 58374497 317429 321461 NC_000014.9 scf98 99.9 True fake: scaffold gap size wrong estimation (local) 58374413 58375184 322035 322802 NC_000014.9 scf98 99.48 True fake: scaffold gap size wrong estimation (local) 58375319 58382695 323917 331293 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58383102 58387469 332480 336840 NC_000014.9 scf98 99.73 True fake: scaffold gap size wrong estimation (local) 58387400 58390396 337510 340506 NC_000014.9 scf98 99.9 True fake: scaffold gap size wrong estimation (local) 58390310 58394164 341410 346256 NC_000014.9 scf98 98.07 True fake: scaffold gap size wrong estimation (local) 58394339 58399898 347253 352812 NC_000014.9 scf98 99.98 True fake: scaffold gap size wrong estimation (local) 58400554 58403729 354205 357364 NC_000014.9 scf98 99.34 True fake: scaffold gap size wrong estimation (local) 58404338 58411361 358697 366361 NC_000014.9 scf98 96.51 True fake: scaffold gap size wrong estimation (local) 58411272 58413866 367103 369697 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58414009 58414526 370662 371179 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58414737 58417213 371317 373793 NC_000014.9 scf98 99.84 True fake: scaffold gap size wrong estimation (local) 58417141 58422188 374570 380326 NC_000014.9 scf98 95.31 True fake: scaffold gap size wrong estimation (local) 58422352 58423397 381494 382539 NC_000014.9 scf98 99.9 True local misassembly 58423673 58425354 382540 384221 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58425257 58426115 385219 386077 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58426261 58432940 387240 393919 NC_000014.9 scf98 99.91 True fake: scaffold gap size wrong estimation (local) 58432844 58435814 394527 397497 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58435719 58437699 398239 400219 NC_000014.9 scf98 100.0 True local misassembly 58437935 58439422 400220 401707 NC_000014.9 scf98 98.86 True fake: scaffold gap size wrong estimation (local) 58439423 58440049 402642 403268 NC_000014.9 scf98 99.84 True indel: indel (<= 5bp) 58440050 58440581 403270 403801 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58441623 58451459 406001 416691 NC_000014.9 scf98 98.11 True fake: scaffold gap size wrong estimation (local) 58451923 58453138 417838 419053 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58453053 58455693 419868 422503 NC_000014.9 scf98 99.58 True fake: scaffold gap size wrong estimation (local) 58455597 58473678 423244 443747 NC_000014.9 scf98 99.33 True fake: scaffold gap size wrong estimation (local) 58473766 58478484 444632 449351 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58478391 58482010 450012 453629 NC_000014.9 scf98 99.78 True fake: scaffold gap size wrong estimation (local) 58482187 58482908 454679 455400 NC_000014.9 scf98 99.86 True local misassembly 58483167 58484866 455502 457201 NC_000014.9 scf98 99.94 True fake: scaffold gap size wrong estimation (local) 58485050 58487643 458226 460819 NC_000014.9 scf98 99.77 True fake: scaffold gap size wrong estimation (local) 58487546 58495554 461518 469529 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58495457 58497888 470195 472625 NC_000014.9 scf98 99.79 True fake: scaffold gap size wrong estimation (local) 58497994 58499795 473614 475415 NC_000014.9 scf98 99.94 True fake: scaffold gap size wrong estimation (local) 58499727 58506746 476258 484100 NC_000014.9 scf98 98.71 True fake: scaffold gap size wrong estimation (local) 58507335 58518975 485402 497809 NC_000014.9 scf98 99.73 True fake: scaffold gap size wrong estimation (local) 58518931 58522637 498601 502304 NC_000014.9 scf98 99.87 True fake: scaffold gap size wrong estimation (local) 58522555 58529234 502910 510394 NC_000014.9 scf98 99.21 True fake: scaffold gap size wrong estimation (local) 58529140 58530051 511090 512001 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58531210 58537822 516342 522993 NC_000014.9 scf98 99.32 True fake: scaffold gap size wrong estimation (local) 58537780 58551080 523790 537089 NC_000014.9 scf98 99.95 True fake: scaffold gap size wrong estimation (local) 58550984 58580877 537728 570793 NC_000014.9 scf98 99.28 True fake: scaffold gap size wrong estimation (local) 58582062 58583131 572585 573655 NC_000014.9 scf98 99.91 True fake: scaffold gap size wrong estimation (local) 58583081 58588431 575609 581776 NC_000014.9 scf98 99.31 True fake: scaffold gap size wrong estimation (local) 58590096 58591402 584296 585565 NC_000014.9 scf98 97.17 True fake: scaffold gap size wrong estimation (local) 58593052 58595100 587908 590056 NC_000014.9 scf98 95.16 True fake: scaffold gap size wrong estimation (local) 58595031 58596982 591561 593524 NC_000014.9 scf98 99.03 True fake: scaffold gap size wrong estimation (local) 58597179 58606402 594520 603805 NC_000014.9 scf98 99.21 True fake: scaffold gap size wrong estimation (local) 58606498 58616814 604679 616523 NC_000014.9 scf98 98.97 True fake: scaffold gap size wrong estimation (local) 58617394 58619716 617948 620271 NC_000014.9 scf98 99.87 True fake: scaffold gap size wrong estimation (local) 58619623 58624719 621020 626116 NC_000014.9 scf98 99.98 True fake: scaffold gap size wrong estimation (local) 58624626 58627710 626780 629863 NC_000014.9 scf98 99.94 True fake: scaffold gap size wrong estimation (local) 58628142 58630380 631049 633288 NC_000014.9 scf98 99.78 True fake: scaffold gap size wrong estimation (local) 58630289 58633188 634010 636910 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58633314 58639920 637750 644356 NC_000014.9 scf98 99.97 True fake: scaffold gap size wrong estimation (local) 58639826 58641224 645985 647383 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58642266 58650082 649226 657083 NC_000014.9 scf98 99.48 True fake: scaffold gap size wrong estimation (local) 58650262 58653195 658025 660958 NC_000014.9 scf98 99.93 True fake: scaffold gap size wrong estimation (local) 58653126 58660777 661746 670100 NC_000014.9 scf98 98.97 True fake: scaffold gap size wrong estimation (local) 58661533 58668704 671629 678800 NC_000014.9 scf98 99.99 True fake: scaffold gap size wrong estimation (local) 58668605 58682982 679394 693770 NC_000014.9 scf98 99.94 True fake: scaffold gap size wrong estimation (local) 58682901 58684134 694410 695643 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58684340 58689488 695886 701839 NC_000014.9 scf98 98.11 True fake: scaffold gap size wrong estimation (local) 58689698 58700592 702871 714553 NC_000014.9 scf98 99.26 True fake: scaffold gap size wrong estimation (local) 58700495 58711241 715196 726624 NC_000014.9 scf98 99.81 True fake: scaffold gap size wrong estimation (local) 58711145 58716217 727280 732362 NC_000014.9 scf98 99.7 True fake: scaffold gap size wrong estimation (local) 58716128 58719645 733007 736537 NC_000014.9 scf98 99.46 True fake: scaffold gap size wrong estimation (local) 58719549 58731148 737268 749473 NC_000014.9 scf98 98.99 True fake: scaffold gap size wrong estimation (local) 58731074 58747970 750234 767870 NC_000014.9 scf98 99.56 True fake: scaffold gap size wrong estimation (local) 58748573 58776745 769213 800509 NC_000014.9 scf98 98.45 True fake: scaffold gap size wrong estimation (local) 58776655 58781267 801367 805913 NC_000014.9 scf98 97.95 True fake: scaffold gap size wrong estimation (local) 58781177 58794999 806646 821019 NC_000014.9 scf98 97.97 True fake: scaffold gap size wrong estimation (local) 58794903 58797572 821855 824524 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58797809 58804547 825622 834057 NC_000014.9 scf98 99.13 True fake: scaffold gap size wrong estimation (local) 58804449 58813175 834748 843475 NC_000014.9 scf98 99.7 True fake: scaffold gap size wrong estimation (local) 58813443 58817331 844474 848362 NC_000014.9 scf98 99.87 True fake: scaffold gap size wrong estimation (local) 58817570 58822365 849358 854153 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58822567 58823934 855110 856477 NC_000014.9 scf98 99.63 True local misassembly 58824103 58825270 856478 857645 NC_000014.9 scf98 100.0 True fake: scaffold gap size wrong estimation (local) 58825420 58834575 858831 868592 NC_000014.9 scf98 97.21 True fake: scaffold gap size wrong estimation (local) 58834512 58850992 869358 887954 NC_000014.9 scf98 99.64 True fake: scaffold gap size wrong estimation (local) 58850930 58870236 888640 908687 NC_000014.9 scf98 99.68 True fake: scaffold gap size wrong estimation (local) 58870536 58875162 909741 914363 NC_000014.9 scf98 99.59 True fake: scaffold gap size wrong estimation (local) 58875654 58889301 915588 929214 NC_000014.9 scf98 99.64 True fake: scaffold gap size wrong estimation (local) 58889327 58890917 930053 931643 NC_000014.9 scf98 99.31 True local misassembly 58891078 58892667 931644 933233 NC_000014.9 scf98 99.62 True fake: scaffold gap size wrong estimation (local) 58892577 58911416 933898 953487 NC_000014.9 scf98 99.74 True fake: scaffold gap size wrong estimation (local) 58911353 58916802 954193 959643 NC_000014.9 scf98 99.91 True fake: scaffold gap size wrong estimation (local) 58916729 58929180 960341 974420 NC_000014.9 scf98 99.54 True fake: scaffold gap size wrong estimation (local) 58929082 58935607 975198 981725 NC_000014.9 scf98 99.85 True fake: scaffold gap size wrong estimation (local) 58935509 58937225 983319 985061 NC_000014.9 scf98 98.45 True fake: scaffold gap size wrong estimation (local) 58937130 58940767 985757 989394 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 58940678 58962406 990026 1011692 NC_000014.9 scf98 99.38 True fake: scaffold gap size wrong estimation (local) 58963735 58982370 1013629 1032280 NC_000014.9 scf98 99.74 True fake: scaffold gap size wrong estimation (local) 58983506 58987485 1034032 1038011 NC_000014.9 scf98 99.9 True fake: scaffold gap size wrong estimation (local) 58987607 58996763 1038930 1048084 NC_000014.9 scf98 99.86 True fake: scaffold gap size wrong estimation (local) 58996877 59002379 1048961 1055275 NC_000014.9 scf98 98.85 True fake: scaffold gap size wrong estimation (local) 59002542 59004809 1056257 1058523 NC_000014.9 scf98 99.74 True fake: scaffold gap size wrong estimation (local) 59004712 59031939 1059059 1088055 NC_000014.9 scf98 99.34 True fake: scaffold gap size wrong estimation (local) 59031857 59041917 1088739 1099499 NC_000014.9 scf98 99.39 True fake: scaffold gap size wrong estimation (local) 59042074 59044118 1100426 1102470 NC_000014.9 scf98 99.76 True fake: scaffold gap size wrong estimation (local) 59043961 59055624 1103410 1115113 NC_000014.9 scf98 99.53 True fake: scaffold gap size wrong estimation (local) 59055527 59058063 1115863 1118337 NC_000014.9 scf98 97.48 True fake: scaffold gap size wrong estimation (local) 59059731 59074610 1120706 1135585 NC_000014.9 scf98 99.92 True fake: scaffold gap size wrong estimation (local) 59074751 59078595 1136508 1140352 NC_000014.9 scf98 99.87 True CONTIG scf98 1140353 correct 23755412 23757118 4583 2877 NC_000014.9 scf99 99.82 True fake: scaffold gap size wrong estimation (local) 23752592 23755507 8246 5333 NC_000014.9 scf99 99.79 True fake: scaffold gap size wrong estimation (local) 23747544 23752433 14071 9182 NC_000014.9 scf99 99.84 True fake: scaffold gap size wrong estimation (local) 23746006 23747228 16433 15211 NC_000014.9 scf99 99.84 True indel: indel (<= 5bp) 23745481 23746004 16957 16434 NC_000014.9 scf99 99.43 True local misassembly 23744420 23745213 17751 16958 NC_000014.9 scf99 99.75 True fake: scaffold gap size wrong estimation (local) 23743152 23744499 20048 18701 NC_000014.9 scf99 99.63 True fake: scaffold gap size wrong estimation (local) 23740619 23742009 23416 22026 NC_000014.9 scf99 99.78 True fake: scaffold gap size wrong estimation (local) 23737461 23738768 27141 25833 NC_000014.9 scf99 99.69 True fake: scaffold gap size wrong estimation (local) 23730697 23736429 34681 28950 NC_000014.9 scf99 99.74 True fake: scaffold gap size wrong estimation (local) 23726702 23730793 40598 36479 NC_000014.9 scf99 98.81 True fake: scaffold gap size wrong estimation (local) 23724289 23726422 43836 41703 NC_000014.9 scf99 99.86 True fake: scaffold gap size wrong estimation (local) 23716456 23724386 52534 44600 NC_000014.9 scf99 99.86 True fake: scaffold gap size wrong estimation (local) 23714718 23716525 55086 53279 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23706577 23714123 64289 55752 NC_000014.9 scf99 99.41 True fake: scaffold gap size wrong estimation (local) 23690078 23705845 82454 65864 NC_000014.9 scf99 99.87 True fake: scaffold gap size wrong estimation (local) 23688976 23689844 84383 83515 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23671823 23687299 102257 86782 NC_000014.9 scf99 99.92 True fake: scaffold gap size wrong estimation (local) 23659836 23671919 115045 102969 NC_000014.9 scf99 99.65 True fake: scaffold gap size wrong estimation (local) 23636153 23659632 140255 116005 NC_000014.9 scf99 99.51 True fake: scaffold gap size wrong estimation (local) 23615221 23636212 163651 140993 NC_000014.9 scf99 99.33 True fake: scaffold gap size wrong estimation (local) 23611833 23615319 167829 164343 NC_000014.9 scf99 99.91 True fake: scaffold gap size wrong estimation (local) 23604668 23611929 175763 168503 NC_000014.9 scf99 99.88 True fake: scaffold gap size wrong estimation (local) 23599033 23604759 182166 176419 NC_000014.9 scf99 99.46 True fake: scaffold gap size wrong estimation (local) 23596501 23598302 185544 183710 NC_000014.9 scf99 98.09 True fake: scaffold gap size wrong estimation (local) 23592227 23596317 191667 186725 NC_000014.9 scf99 99.63 True fake: scaffold gap size wrong estimation (local) 23590719 23591844 193931 192806 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23588825 23590811 197229 195244 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23574378 23583746 214176 203278 NC_000014.9 scf99 98.01 True fake: scaffold gap size wrong estimation (local) 23563819 23574037 226308 215298 NC_000014.9 scf99 99.93 True fake: scaffold gap size wrong estimation (local) 23554979 23563900 236725 227048 NC_000014.9 scf99 99.98 True fake: scaffold gap size wrong estimation (local) 23541104 23555075 251439 237469 NC_000014.9 scf99 99.95 True fake: scaffold gap size wrong estimation (local) 23510981 23541184 284613 252100 NC_000014.9 scf99 99.85 True fake: scaffold gap size wrong estimation (local) 23508803 23511072 287591 285324 NC_000014.9 scf99 99.91 True fake: scaffold gap size wrong estimation (local) 23505807 23508656 291419 288573 NC_000014.9 scf99 99.86 True fake: scaffold gap size wrong estimation (local) 23504652 23505880 293458 292230 NC_000014.9 scf99 99.76 True fake: scaffold gap size wrong estimation (local) 23501832 23504318 297166 293614 NC_000014.9 scf99 98.81 True fake: scaffold gap size wrong estimation (local) 23497731 23501278 303206 298668 NC_000014.9 scf99 97.34 True fake: scaffold gap size wrong estimation (local) 23493607 23497816 308346 304121 NC_000014.9 scf99 99.41 True fake: scaffold gap size wrong estimation (local) 23492050 23493689 310746 309117 NC_000014.9 scf99 99.33 True fake: scaffold gap size wrong estimation (local) 23489524 23492103 314140 311565 NC_000014.9 scf99 99.73 True fake: scaffold gap size wrong estimation (local) 23487419 23489242 317082 315259 NC_000014.9 scf99 99.95 True fake: scaffold gap size wrong estimation (local) 23474040 23487496 332459 317820 NC_000014.9 scf99 99.58 True fake: scaffold gap size wrong estimation (local) 23473196 23473789 334166 333573 NC_000014.9 scf99 99.66 True local misassembly 23470882 23471809 336343 335416 NC_000014.9 scf99 99.89 True indel: indel (<= 5bp) 23468086 23470718 339137 336505 NC_000014.9 scf99 99.85 True fake: scaffold gap size wrong estimation (local) 23466488 23467810 341654 340332 NC_000014.9 scf99 99.85 True fake: scaffold gap size wrong estimation (local) 23462860 23466582 346650 342874 NC_000014.9 scf99 98.18 True fake: scaffold gap size wrong estimation (local) 23460365 23462442 349823 347749 NC_000014.9 scf99 99.76 True fake: scaffold gap size wrong estimation (local) 23457369 23460447 353655 350576 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23428964 23457441 383281 354322 NC_000014.9 scf99 98.14 True fake: scaffold gap size wrong estimation (local) 23425964 23428592 387335 384707 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23424893 23425855 389228 388266 NC_000014.9 scf99 97.3 True indel: indel (> 5bp) 23423441 23424859 390647 389229 NC_000014.9 scf99 100.0 True local misassembly 23422794 23423297 391165 390662 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23420199 23422595 394727 392331 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23418229 23419919 397533 395843 NC_000014.9 scf99 99.82 True local misassembly 23417518 23418062 398078 397534 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23416229 23417615 400505 399119 NC_000014.9 scf99 99.78 True fake: scaffold gap size wrong estimation (local) 23415198 23415754 401324 400768 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23413381 23415084 404192 402477 NC_000014.9 scf99 99.13 True fake: scaffold gap size wrong estimation (local) 23400990 23413004 417401 405387 NC_000014.9 scf99 99.97 True fake: scaffold gap size wrong estimation (local) 23396108 23400348 423916 418847 NC_000014.9 scf99 95.81 True fake: scaffold gap size wrong estimation (local) 23390414 23396200 431328 424677 NC_000014.9 scf99 97.63 True fake: scaffold gap size wrong estimation (local) 23388170 23390130 434397 432429 NC_000014.9 scf99 99.59 True fake: scaffold gap size wrong estimation (local) 23386536 23388268 437004 435272 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 23384642 23386056 439930 438516 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23363163 23384512 462231 440882 NC_000014.9 scf99 99.99 True fake: scaffold gap size wrong estimation (local) 23345101 23363008 481930 463191 NC_000014.9 scf99 99.88 True fake: scaffold gap size wrong estimation (local) 23342075 23345183 485688 482578 NC_000014.9 scf99 99.84 True fake: scaffold gap size wrong estimation (local) 23332797 23342171 498264 487100 NC_000014.9 scf99 98.34 True fake: scaffold gap size wrong estimation (local) 23330915 23332575 500939 499279 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 23329514 23330414 502454 501554 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23327773 23329017 504721 503477 NC_000014.9 scf99 99.76 True fake: scaffold gap size wrong estimation (local) 23326561 23327703 506162 505020 NC_000014.9 scf99 99.91 True fake: scaffold gap size wrong estimation (local) 23318457 23326656 515416 507216 NC_000014.9 scf99 99.87 True fake: scaffold gap size wrong estimation (local) 23312286 23313899 517209 515596 NC_000014.9 scf99 99.88 True local misassembly 23313831 23317284 520663 517210 NC_000014.9 scf99 99.91 True local misassembly 23303426 23309633 526880 520664 NC_000014.9 scf99 99.79 True fake: scaffold gap size wrong estimation (local) 23299932 23303515 531158 527575 NC_000014.9 scf99 99.92 True fake: scaffold gap size wrong estimation (local) 23290888 23300026 541784 531869 NC_000014.9 scf99 99.87 True fake: scaffold gap size wrong estimation (local) 23288416 23290715 545092 542793 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23283674 23287555 550548 546667 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23280809 23283761 554135 551180 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23279691 23280493 556056 555254 NC_000014.9 scf99 99.63 True indel: indel (> 5bp) 23279036 23279621 556642 556057 NC_000014.9 scf99 100.0 True local misassembly 23277947 23278816 557596 556727 NC_000014.9 scf99 99.77 True fake: scaffold gap size wrong estimation (local) 23274578 23277871 561852 558562 NC_000014.9 scf99 99.88 True fake: scaffold gap size wrong estimation (local) 23272382 23274672 564874 562584 NC_000014.9 scf99 99.96 True fake: scaffold gap size wrong estimation (local) 23267582 23272470 570494 565608 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 23264820 23266328 574023 572500 NC_000014.9 scf99 98.88 True fake: scaffold gap size wrong estimation (local) 23263869 23264890 575609 574588 NC_000014.9 scf99 96.87 True fake: scaffold gap size wrong estimation (local) 23261820 23262957 578965 577793 NC_000014.9 scf99 96.85 True fake: scaffold gap size wrong estimation (local) 23258697 23261376 582946 580267 NC_000014.9 scf99 99.85 True fake: scaffold gap size wrong estimation (local) 23253975 23258090 588417 584313 NC_000014.9 scf99 99.61 True fake: scaffold gap size wrong estimation (local) 23242109 23254074 603837 589090 NC_000014.9 scf99 96.97 True fake: scaffold gap size wrong estimation (local) 23239744 23241898 607192 605038 NC_000014.9 scf99 100.0 True indel: indel (> 5bp) 23239034 23239696 607887 607225 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23237122 23238260 610579 609441 NC_000014.9 scf99 99.91 True local misassembly 23236435 23236975 611120 610580 NC_000014.9 scf99 99.45 True fake: scaffold gap size wrong estimation (local) 23233948 23236468 614890 612245 NC_000014.9 scf99 95.64 True fake: scaffold gap size wrong estimation (local) 23230659 23231734 618632 617557 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23228462 23230459 621913 619944 NC_000014.9 scf99 98.6 True fake: scaffold gap size wrong estimation (local) 23226762 23228040 624617 623341 NC_000014.9 scf99 99.84 True fake: scaffold gap size wrong estimation (local) 23222792 23226109 630190 626873 NC_000014.9 scf99 99.91 True fake: scaffold gap size wrong estimation (local) 23221130 23222886 632643 630887 NC_000014.9 scf99 100.0 True local misassembly 23220192 23220979 633431 632644 NC_000014.9 scf99 100.0 True indel: indel (> 5bp) 23219622 23220185 633995 633432 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23218376 23219621 636091 634846 NC_000014.9 scf99 99.76 True indel: indel (<= 5bp) 23216880 23218194 637583 636269 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23216196 23216879 638610 637927 NC_000014.9 scf99 99.56 True fake: scaffold gap size wrong estimation (local) 23210520 23216066 646104 639817 NC_000014.9 scf99 98.19 True fake: scaffold gap size wrong estimation (local) 23209944 23210579 648042 647407 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23202068 23208776 656768 650014 NC_000014.9 scf99 99.22 True fake: scaffold gap size wrong estimation (local) 23200547 23202165 659081 657463 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 23199194 23200374 661473 660293 NC_000014.9 scf99 100.0 True local misassembly 23198080 23198671 662394 661803 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23194737 23197787 666879 663829 NC_000014.9 scf99 99.97 True fake: scaffold gap size wrong estimation (local) 23194019 23194574 668385 667830 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23193096 23193905 669418 668610 NC_000014.9 scf99 99.88 True fake: scaffold gap size wrong estimation (local) 23191351 23192111 671161 670401 NC_000014.9 scf99 99.47 True fake: scaffold gap size wrong estimation (local) 23185890 23191174 677417 672107 NC_000014.9 scf99 99.36 True fake: scaffold gap size wrong estimation (local) 23184318 23185982 679699 678047 NC_000014.9 scf99 99.1 True fake: scaffold gap size wrong estimation (local) 23176943 23184412 689144 680396 NC_000014.9 scf99 98.73 True fake: scaffold gap size wrong estimation (local) 23175357 23176783 691523 690097 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23169630 23175450 698038 692218 NC_000014.9 scf99 99.95 True fake: scaffold gap size wrong estimation (local) 23164668 23169694 703747 698718 NC_000014.9 scf99 99.84 True fake: scaffold gap size wrong estimation (local) 23161932 23164762 707253 704423 NC_000014.9 scf99 99.93 True fake: scaffold gap size wrong estimation (local) 23160559 23161795 709459 708223 NC_000014.9 scf99 99.76 True local misassembly 23158463 23160373 711370 709460 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23156033 23158462 714615 712186 NC_000014.9 scf99 99.96 True fake: scaffold gap size wrong estimation (local) 23154999 23156032 716639 715606 NC_000014.9 scf99 99.9 True local misassembly 23152607 23154739 718778 716646 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23151721 23152702 720215 719236 NC_000014.9 scf99 99.8 True fake: scaffold gap size wrong estimation (local) 23135565 23151766 739682 721094 NC_000014.9 scf99 98.66 True fake: scaffold gap size wrong estimation (local) 23124198 23135473 753078 740925 NC_000014.9 scf99 95.91 True fake: scaffold gap size wrong estimation (local) 23108452 23124295 771138 753733 NC_000014.9 scf99 99.1 True fake: scaffold gap size wrong estimation (local) 23106203 23107792 774243 772658 NC_000014.9 scf99 99.69 True fake: scaffold gap size wrong estimation (local) 23104895 23105759 776792 775928 NC_000014.9 scf99 100.0 True local misassembly 23103568 23104358 777590 776800 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23097178 23103493 785412 779096 NC_000014.9 scf99 99.89 True fake: scaffold gap size wrong estimation (local) 23096482 23097269 786938 786154 NC_000014.9 scf99 99.49 True local misassembly 23091567 23096225 791755 787098 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 23083657 23091637 801204 792461 NC_000014.9 scf99 99.91 True fake: scaffold gap size wrong estimation (local) 23075245 23083723 811148 801901 NC_000014.9 scf99 99.93 True fake: scaffold gap size wrong estimation (local) 23073871 23075341 813305 811835 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23070763 23073571 817298 814490 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23064897 23070861 824586 818021 NC_000014.9 scf99 98.61 True fake: scaffold gap size wrong estimation (local) 23061979 23064753 828587 825813 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23038547 23061698 853725 829714 NC_000014.9 scf99 99.71 True fake: scaffold gap size wrong estimation (local) 23036478 23038336 856651 854793 NC_000014.9 scf99 99.89 True fake: scaffold gap size wrong estimation (local) 23032620 23036172 861205 857653 NC_000014.9 scf99 99.97 True fake: scaffold gap size wrong estimation (local) 23030339 23032714 864348 861929 NC_000014.9 scf99 98.14 True fake: scaffold gap size wrong estimation (local) 23028086 23029905 868031 866212 NC_000014.9 scf99 100.0 True local misassembly 23027132 23027923 868823 868032 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23019628 23026843 877200 869958 NC_000014.9 scf99 99.61 True fake: scaffold gap size wrong estimation (local) 23016798 23018708 880598 878688 NC_000014.9 scf99 99.9 True fake: scaffold gap size wrong estimation (local) 23015181 23016217 883220 882184 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23011760 23014342 887974 885392 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23009370 23011488 891088 888970 NC_000014.9 scf99 100.0 True local misassembly 23008163 23009129 892055 891089 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 23002138 23008084 899820 893040 NC_000014.9 scf99 98.59 True fake: scaffold gap size wrong estimation (local) 22996900 23001804 905992 900147 NC_000014.9 scf99 99.16 True fake: scaffold gap size wrong estimation (local) 22993101 22996989 911510 906749 NC_000014.9 scf99 98.64 True fake: scaffold gap size wrong estimation (local) 22991675 22992849 913841 912667 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 22983744 22990551 922635 915828 NC_000014.9 scf99 99.97 True fake: scaffold gap size wrong estimation (local) 22976019 22983818 931922 923336 NC_000014.9 scf99 99.86 True fake: scaffold gap size wrong estimation (local) 22973033 22975696 935708 933045 NC_000014.9 scf99 99.92 True fake: scaffold gap size wrong estimation (local) 22971122 22973131 938522 936556 NC_000014.9 scf99 97.86 True fake: scaffold gap size wrong estimation (local) 22968491 22970116 942092 940454 NC_000014.9 scf99 99.02 True fake: scaffold gap size wrong estimation (local) 22966091 22967860 945336 943567 NC_000014.9 scf99 99.89 True fake: scaffold gap size wrong estimation (local) 22963927 22965356 948450 947021 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 22961486 22963812 953233 950907 NC_000014.9 scf99 100.0 True fake: scaffold gap size wrong estimation (local) 22957845 22960541 957631 954936 NC_000014.9 scf99 99.93 True fake: scaffold gap size wrong estimation (local) 22953990 22957941 962336 958442 NC_000014.9 scf99 95.86 True fake: scaffold gap size wrong estimation (local) 22949449 22953640 968348 963496 NC_000014.9 scf99 98.61 True fake: scaffold gap size wrong estimation (local) 22946882 22948453 970878 969307 NC_000014.9 scf99 99.94 True fake: scaffold gap size wrong estimation (local) 22945775 22946881 973153 972047 NC_000014.9 scf99 100.0 True CONTIG scf99 973821 correct 62197964 62199596 1685 10 NC_000014.9 scf100 97.43 True fake: scaffold gap size wrong estimation (local) 62195464 62197693 5013 2784 NC_000014.9 scf100 100.0 True fake: scaffold gap size wrong estimation (local) 62184541 62195563 16761 5738 NC_000014.9 scf100 99.82 True fake: scaffold gap size wrong estimation (local) 62176567 62184633 25507 17439 NC_000014.9 scf100 99.86 True fake: scaffold gap size wrong estimation (local) 62175129 62176658 27720 26192 NC_000014.9 scf100 99.67 True fake: scaffold gap size wrong estimation (local) 62155951 62173780 48248 29698 NC_000014.9 scf100 99.42 True fake: scaffold gap size wrong estimation (local) 62150432 62156050 55364 48927 NC_000014.9 scf100 99.84 True fake: scaffold gap size wrong estimation (local) 62148415 62150528 58185 56068 NC_000014.9 scf100 99.67 True fake: scaffold gap size wrong estimation (local) 62140362 62148464 67026 58925 NC_000014.9 scf100 99.95 True fake: scaffold gap size wrong estimation (local) 62135464 62140450 72708 67700 NC_000014.9 scf100 99.38 True fake: scaffold gap size wrong estimation (local) 62133439 62135560 75521 73400 NC_000014.9 scf100 99.95 True fake: scaffold gap size wrong estimation (local) 62130745 62133527 79016 76234 NC_000014.9 scf100 99.82 True fake: scaffold gap size wrong estimation (local) 62109285 62130834 101227 79678 NC_000014.9 scf100 99.88 True fake: scaffold gap size wrong estimation (local) 62089052 62109384 122182 101854 NC_000014.9 scf100 99.87 True fake: scaffold gap size wrong estimation (local) 62086334 62089148 125721 122907 NC_000014.9 scf100 99.75 True fake: scaffold gap size wrong estimation (local) 62078173 62086433 134657 126396 NC_000014.9 scf100 99.76 True fake: scaffold gap size wrong estimation (local) 62072302 62078197 141352 135460 NC_000014.9 scf100 99.59 True fake: scaffold gap size wrong estimation (local) 62069040 62072400 145377 142017 NC_000014.9 scf100 99.85 True fake: scaffold gap size wrong estimation (local) 62067118 62068937 148173 146364 NC_000014.9 scf100 99.4 True fake: scaffold gap size wrong estimation (local) 62056349 62067207 160499 148861 NC_000014.9 scf100 99.66 True fake: scaffold gap size wrong estimation (local) 62054384 62056428 163381 161337 NC_000014.9 scf100 99.95 True fake: scaffold gap size wrong estimation (local) 62051542 62054482 167145 164205 NC_000014.9 scf100 99.8 True CONTIG scf100 171459 correct 39662122 39688254 1 26896 NC_000014.9 scf101 99.52 True fake: scaffold gap size wrong estimation (local) 39688210 39692520 27640 31950 NC_000014.9 scf101 99.88 True fake: scaffold gap size wrong estimation (local) 39692439 39697677 32683 38126 NC_000014.9 scf101 98.18 True CONTIG scf101 38126 correct 44211231 44212329 183 1281 NC_000014.9 scf102 99.82 True local misassembly 44212416 44212976 1282 1842 NC_000014.9 scf102 99.82 True fake: scaffold gap size wrong estimation (local) 44213519 44221251 3364 11874 NC_000014.9 scf102 99.55 True fake: scaffold gap size wrong estimation (local) 44221206 44225160 12504 16450 NC_000014.9 scf102 99.75 True fake: scaffold gap size wrong estimation (local) 44225083 44232845 17129 24891 NC_000014.9 scf102 99.99 True fake: scaffold gap size wrong estimation (local) 44232747 44241639 25571 34701 NC_000014.9 scf102 98.9 True fake: scaffold gap size wrong estimation (local) 44241546 44244854 35583 38891 NC_000014.9 scf102 100.0 True fake: scaffold gap size wrong estimation (local) 44244809 44245409 39678 40278 NC_000014.9 scf102 100.0 True fake: scaffold gap size wrong estimation (local) 44246507 44247693 41206 42392 NC_000014.9 scf102 99.92 True fake: scaffold gap size wrong estimation (local) 44247602 44266435 43125 61992 NC_000014.9 scf102 99.78 True fake: scaffold gap size wrong estimation (local) 44266806 44276506 63198 73411 NC_000014.9 scf102 98.53 True fake: scaffold gap size wrong estimation (local) 44276412 44278282 74110 75949 NC_000014.9 scf102 98.29 True fake: scaffold gap size wrong estimation (local) 44278444 44289014 76938 87500 NC_000014.9 scf102 99.89 True fake: scaffold gap size wrong estimation (local) 44288918 44311057 89051 111280 NC_000014.9 scf102 99.54 True CONTIG scf102 112821 correct 26100385 26106400 6036 1 NC_000014.9 scf103 99.52 True fake: scaffold gap size wrong estimation (local) 26082988 26099838 24172 7326 NC_000014.9 scf103 99.86 True fake: scaffold gap size wrong estimation (local) 26081606 26082840 26340 25105 NC_000014.9 scf103 99.92 True indel: stretch of mismatches 26080744 26081510 27202 26436 NC_000014.9 scf103 96.92 True fake: scaffold gap size wrong estimation (local) 26075293 26080837 34241 27911 NC_000014.9 scf103 99.95 True fake: scaffold gap size wrong estimation (local) 26069268 26075387 41019 34901 NC_000014.9 scf103 99.77 True fake: scaffold gap size wrong estimation (local) 26063931 26069334 47120 41717 NC_000014.9 scf103 99.81 True fake: scaffold gap size wrong estimation (local) 26059027 26064024 52841 47844 NC_000014.9 scf103 99.8 True fake: scaffold gap size wrong estimation (local) 26015733 26059122 98386 53499 NC_000014.9 scf103 99.68 True fake: scaffold gap size wrong estimation (local) 26010084 26015832 104948 99208 NC_000014.9 scf103 99.69 True fake: scaffold gap size wrong estimation (local) 26006725 26010180 109110 105655 NC_000014.9 scf103 99.8 True fake: scaffold gap size wrong estimation (local) 26002715 26006514 113864 110065 NC_000014.9 scf103 99.79 True fake: scaffold gap size wrong estimation (local) 26000072 26001945 117196 115323 NC_000014.9 scf103 99.95 True fake: scaffold gap size wrong estimation (local) 25992917 26000159 125218 117979 NC_000014.9 scf103 99.83 True fake: scaffold gap size wrong estimation (local) 25985204 25993014 134561 125949 NC_000014.9 scf103 99.59 True fake: scaffold gap size wrong estimation (local) 25984081 25985294 136594 135381 NC_000014.9 scf103 99.92 True fake: scaffold gap size wrong estimation (local) 25981493 25983120 138938 137311 NC_000014.9 scf103 99.94 True fake: scaffold gap size wrong estimation (local) 25980583 25981492 141519 140610 NC_000014.9 scf103 100.0 True fake: scaffold gap size wrong estimation (local) 25969323 25980678 154714 142654 NC_000014.9 scf103 98.15 True fake: scaffold gap size wrong estimation (local) 25963729 25969422 161058 155365 NC_000014.9 scf103 99.96 True CONTIG scf103 161058 correct 104804149 104806617 2477 9 NC_000014.9 scf104 99.92 True fake: scaffold gap size wrong estimation (local) 104800839 104804240 6602 3198 NC_000014.9 scf104 99.79 True fake: scaffold gap size wrong estimation (local) 104795822 104800537 12430 7714 NC_000014.9 scf104 99.85 True fake: scaffold gap size wrong estimation (local) 104786571 104795504 22469 13535 NC_000014.9 scf104 99.9 True fake: scaffold gap size wrong estimation (local) 104783381 104786616 26423 23200 NC_000014.9 scf104 99.63 True fake: scaffold gap size wrong estimation (local) 104765164 104783439 46298 27119 NC_000014.9 scf104 99.97 True fake: scaffold gap size wrong estimation (local) 104751079 104764154 63411 48661 NC_000014.9 scf104 99.01 True fake: scaffold gap size wrong estimation (local) 104747765 104751174 67551 64142 NC_000014.9 scf104 99.97 True fake: scaffold gap size wrong estimation (local) 104738230 104747580 77765 68415 NC_000014.9 scf104 100.0 True fake: scaffold gap size wrong estimation (local) 104721340 104738138 97818 78645 NC_000014.9 scf104 98.49 True fake: scaffold gap size wrong estimation (local) 104716894 104720353 103024 99567 NC_000014.9 scf104 99.74 True fake: scaffold gap size wrong estimation (local) 104687480 104716808 134088 103940 NC_000014.9 scf104 99.87 True fake: scaffold gap size wrong estimation (local) 104680955 104685948 141458 136464 NC_000014.9 scf104 99.9 True fake: scaffold gap size wrong estimation (local) 104675547 104681053 147640 142135 NC_000014.9 scf104 99.93 True fake: scaffold gap size wrong estimation (local) 104673118 104675644 150933 148407 NC_000014.9 scf104 99.84 True fake: scaffold gap size wrong estimation (local) 104672051 104672930 152821 151942 NC_000014.9 scf104 100.0 True fake: scaffold gap size wrong estimation (local) 104670770 104671908 154096 152958 NC_000014.9 scf104 100.0 True fake: scaffold gap size wrong estimation (local) 104665247 104670867 162859 155269 NC_000014.9 scf104 98.81 True fake: scaffold gap size wrong estimation (local) 104662478 104664667 166494 164345 NC_000014.9 scf104 96.42 True fake: scaffold gap size wrong estimation (local) 104655143 104661864 175006 168285 NC_000014.9 scf104 99.91 True fake: scaffold gap size wrong estimation (local) 104648140 104654908 182580 176035 NC_000014.9 scf104 96.66 True fake: scaffold gap size wrong estimation (local) 104628906 104648227 205913 183382 NC_000014.9 scf104 98.35 True fake: scaffold gap size wrong estimation (local) 104625741 104628704 209855 206892 NC_000014.9 scf104 99.9 True fake: scaffold gap size wrong estimation (local) 104625004 104625838 211443 210610 NC_000014.9 scf104 99.76 True fake: scaffold gap size wrong estimation (local) 104623310 104624097 213001 212214 NC_000014.9 scf104 100.0 True fake: scaffold gap size wrong estimation (local) 104616651 104623400 222330 214851 NC_000014.9 scf104 96.58 True fake: scaffold gap size wrong estimation (local) 104616117 104616744 223867 223240 NC_000014.9 scf104 99.84 True local misassembly 104614684 104615997 225181 223868 NC_000014.9 scf104 99.77 True fake: scaffold gap size wrong estimation (local) 104606408 104614554 234285 226139 NC_000014.9 scf104 99.93 True fake: scaffold gap size wrong estimation (local) 104601793 104606305 239669 235157 NC_000014.9 scf104 99.93 True fake: scaffold gap size wrong estimation (local) 104593601 104601891 248628 240338 NC_000014.9 scf104 99.87 True fake: scaffold gap size wrong estimation (local) 104571004 104593686 272869 249333 NC_000014.9 scf104 99.92 True fake: scaffold gap size wrong estimation (local) 104568489 104571087 276226 273628 NC_000014.9 scf104 100.0 True fake: scaffold gap size wrong estimation (local) 104562894 104568391 282548 277102 NC_000014.9 scf104 99.0 True fake: scaffold gap size wrong estimation (local) 104562422 104562988 283736 283170 NC_000014.9 scf104 99.12 True fake: scaffold gap size wrong estimation (local) 104548858 104562485 298458 284815 NC_000014.9 scf104 99.76 True fake: scaffold gap size wrong estimation (local) 104546931 104548627 301139 299427 NC_000014.9 scf104 98.6 True fake: scaffold gap size wrong estimation (local) 104539402 104546693 309662 302352 NC_000014.9 scf104 99.67 True fake: scaffold gap size wrong estimation (local) 104535941 104539013 313884 310812 NC_000014.9 scf104 99.97 True fake: scaffold gap size wrong estimation (local) 104534420 104535652 316779 315514 NC_000014.9 scf104 97.31 True fake: scaffold gap size wrong estimation (local) 104533164 104533680 318946 318430 NC_000014.9 scf104 99.61 True indel: indel (<= 5bp) 104528324 104533163 323789 318950 NC_000014.9 scf104 99.73 True indel: indel (<= 5bp) 104527640 104528321 324471 323790 NC_000014.9 scf104 99.85 True fake: scaffold gap size wrong estimation (local) 104511876 104526083 342851 326928 NC_000014.9 scf104 99.19 True fake: scaffold gap size wrong estimation (local) 104498926 104511866 356570 343633 NC_000014.9 scf104 99.81 True CONTIG scf104 356570 correct 45888799 45895446 1 6609 NC_000014.9 scf105 98.07 True fake: scaffold gap size wrong estimation (local) 45895357 45900192 7298 12134 NC_000014.9 scf105 99.94 True fake: scaffold gap size wrong estimation (local) 45900121 45902235 12890 15004 NC_000014.9 scf105 99.81 True fake: scaffold gap size wrong estimation (local) 45902139 45905239 15777 18877 NC_000014.9 scf105 100.0 True fake: scaffold gap size wrong estimation (local) 45905357 45926569 19740 40946 NC_000014.9 scf105 99.92 True CONTIG scf105 40946 correct 66031143 66032061 1 946 NC_000014.9 scf106 97.04 True fake: scaffold gap size wrong estimation (local) 66031993 66046315 1625 16701 NC_000014.9 scf106 99.6 True fake: scaffold gap size wrong estimation (local) 66046222 66049823 17445 21941 NC_000014.9 scf106 99.83 True fake: scaffold gap size wrong estimation (local) 66049726 66054758 22580 27612 NC_000014.9 scf106 99.84 True fake: scaffold gap size wrong estimation (local) 66054663 66062176 28249 35762 NC_000014.9 scf106 99.96 True fake: scaffold gap size wrong estimation (local) 66062778 66070014 37117 44352 NC_000014.9 scf106 99.89 True fake: scaffold gap size wrong estimation (local) 66069920 66071799 45105 46984 NC_000014.9 scf106 99.95 True fake: scaffold gap size wrong estimation (local) 66071833 66082534 47818 58520 NC_000014.9 scf106 99.95 True fake: scaffold gap size wrong estimation (local) 66082439 66086194 59209 62964 NC_000014.9 scf106 100.0 True fake: scaffold gap size wrong estimation (local) 66086516 66100994 64042 78520 NC_000014.9 scf106 99.99 True fake: scaffold gap size wrong estimation (local) 66101189 66121438 79501 101355 NC_000014.9 scf106 99.72 True fake: scaffold gap size wrong estimation (local) 66121347 66124855 102040 105548 NC_000014.9 scf106 100.0 True fake: scaffold gap size wrong estimation (local) 66124762 66145982 106246 127466 NC_000014.9 scf106 99.99 True fake: scaffold gap size wrong estimation (local) 66146201 66149110 128416 131339 NC_000014.9 scf106 99.52 True fake: scaffold gap size wrong estimation (local) 66149014 66154933 131969 137887 NC_000014.9 scf106 99.97 True fake: scaffold gap size wrong estimation (local) 66154885 66179514 138678 165507 NC_000014.9 scf106 99.04 True fake: scaffold gap size wrong estimation (local) 66179418 66183622 166195 171271 NC_000014.9 scf106 100.0 True CONTIG scf106 174335 correct 54876441 54879896 1 3479 NC_000014.9 scf107 99.08 True fake: scaffold gap size wrong estimation (local) 54881026 54883400 5186 7560 NC_000014.9 scf107 99.75 True fake: scaffold gap size wrong estimation (local) 54883621 54884639 8763 9781 NC_000014.9 scf107 99.8 True local misassembly 54884911 54886508 9782 11379 NC_000014.9 scf107 96.93 True fake: scaffold gap size wrong estimation (local) 54886509 54887429 12277 13197 NC_000014.9 scf107 99.78 True indel: indel (<= 5bp) 54887430 54888516 13200 14286 NC_000014.9 scf107 99.91 True fake: not a misassembly (possible transposable element) 63230845 63236843 14287 20285 NC_000014.9 scf107 99.97 True fake: not a misassembly (possible transposable element) 54893318 54897009 20286 23976 NC_000014.9 scf107 99.73 True fake: not a misassembly (possible transposable element) 63239272 63243424 24227 28379 NC_000014.9 scf107 99.93 True fake: not a misassembly (possible transposable element) 54900297 54900889 28853 29445 NC_000014.9 scf107 100.0 True relocation, inconsistency = 8342818 63243827 63256999 29565 42738 NC_000014.9 scf107 99.91 True fake: not a misassembly (possible transposable element) 54911591 54913027 42739 44175 NC_000014.9 scf107 99.86 True fake: not a misassembly (possible transposable element) 63257690 63278066 44176 64551 NC_000014.9 scf107 99.94 True fake: not a misassembly (possible transposable element) 54928036 54929507 64882 66347 NC_000014.9 scf107 99.52 True fake: not a misassembly (possible transposable element) 63278449 63293774 66861 82186 NC_000014.9 scf107 99.98 True fake: not a misassembly (possible transposable element) 54942919 54944636 82187 83904 NC_000014.9 scf107 99.94 True fake: not a misassembly (possible transposable element) 63294707 63297123 83922 86338 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 54946272 54949164 86339 89245 NC_000014.9 scf107 99.35 True fake: not a misassembly (possible transposable element) 63298979 63303289 89858 94167 NC_000014.9 scf107 99.81 True fake: scaffold gap size wrong estimation (local) 63303310 63306242 95087 97906 NC_000014.9 scf107 95.81 True fake: scaffold gap size wrong estimation (local) 63306154 63307554 98715 100114 NC_000014.9 scf107 99.86 True fake: scaffold gap size wrong estimation (local) 63307668 63320563 101008 114664 NC_000014.9 scf107 99.64 True fake: scaffold gap size wrong estimation (local) 63320779 63324737 115672 119630 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63324653 63325301 121082 121730 NC_000014.9 scf107 100.0 True local misassembly 63325972 63326571 121731 122330 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63326559 63333187 123992 130620 NC_000014.9 scf107 99.91 True fake: scaffold gap size wrong estimation (local) 63333091 63337848 131285 136053 NC_000014.9 scf107 99.77 True fake: scaffold gap size wrong estimation (local) 63337751 63340905 136838 140021 NC_000014.9 scf107 99.09 True fake: scaffold gap size wrong estimation (local) 63341509 63348209 141402 148102 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63348119 63351736 148767 152384 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63351749 63359721 153114 162799 NC_000014.9 scf107 98.8 True fake: scaffold gap size wrong estimation (local) 63359906 63379074 163774 184387 NC_000014.9 scf107 99.33 True fake: scaffold gap size wrong estimation (local) 63380605 63382500 186561 188458 NC_000014.9 scf107 99.89 True fake: scaffold gap size wrong estimation (local) 63382406 63390337 190112 198043 NC_000014.9 scf107 99.99 True fake: scaffold gap size wrong estimation (local) 63390370 63391590 199023 200243 NC_000014.9 scf107 99.18 True local misassembly 63391854 63394081 200262 202489 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63394082 63395352 203341 204611 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63397510 63398719 207548 208757 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63398720 63399387 208917 209584 NC_000014.9 scf107 100.0 True local misassembly 63399735 63400699 209585 210549 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63400700 63403480 211901 214682 NC_000014.9 scf107 99.96 True fake: not a misassembly (possible transposable element) 65861012 65861632 214683 215303 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63403389 63406176 215332 218119 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 65863649 65865386 218120 219860 NC_000014.9 scf107 99.54 True fake: not a misassembly (possible transposable element) 63407134 63408884 219861 221611 NC_000014.9 scf107 100.0 True relocation, inconsistency = 2457548 65866433 65888379 221612 244382 NC_000014.9 scf107 98.81 True relocation, inconsistency = -2462653 63425727 63429989 244383 248645 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63429892 63431241 249310 250659 NC_000014.9 scf107 99.85 True local misassembly 63432249 63439551 251613 259757 NC_000014.9 scf107 99.71 True fake: not a misassembly (possible transposable element) 65899915 65906146 259758 265989 NC_000014.9 scf107 99.92 True fake: not a misassembly (possible transposable element) 63444207 63446847 265990 268630 NC_000014.9 scf107 100.0 True relocation, inconsistency = 41617707 21824525 21826499 270602 268631 NC_000014.9 scf107 99.7 True fake: not a misassembly (possible transposable element) 65909997 65912732 270603 273332 NC_000014.9 scf107 99.78 True fake: not a misassembly (possible transposable element) 21814563 21823091 281872 273352 NC_000014.9 scf107 99.71 True relocation, inconsistency = 41634882 63457974 63462327 281873 286226 NC_000014.9 scf107 100.0 True relocation, inconsistency = 2460914 65923242 65924859 286227 287844 NC_000014.9 scf107 99.81 True relocation, inconsistency = 44113226 21808576 21810015 289284 287845 NC_000014.9 scf107 100.0 True indel: indel (> 5bp) 21806899 21808377 290988 289506 NC_000014.9 scf107 99.39 True relocation, inconsistency = 44118199 65926577 65947619 290989 312468 NC_000014.9 scf107 99.75 True relocation, inconsistency = 44137546 21787311 21789030 314188 312469 NC_000014.9 scf107 99.94 True relocation, inconsistency = 41695510 63484541 63485641 314189 315288 NC_000014.9 scf107 99.91 True relocation, inconsistency = 2464050 65949692 65950986 315289 316583 NC_000014.9 scf107 99.92 True relocation, inconsistency = 44163548 21785420 21786143 317306 316584 NC_000014.9 scf107 99.72 True relocation, inconsistency = 41700751 63486895 63495233 317307 325645 NC_000014.9 scf107 99.99 True relocation, inconsistency = 21160549 84655903 84661928 325766 331791 NC_000014.9 scf107 99.85 True relocation, inconsistency = -18698001 65963928 65977842 331792 345706 NC_000014.9 scf107 99.94 True fake: not a misassembly (possible transposable element) 63511420 63515725 345717 350018 NC_000014.9 scf107 99.91 True fake: not a misassembly (possible transposable element) 65981174 65982207 350019 351052 NC_000014.9 scf107 99.9 True relocation, inconsistency = 18695294 84677502 84680106 351053 353657 NC_000014.9 scf107 99.88 True relocation, inconsistency = -21161499 63518608 63519215 353658 354265 NC_000014.9 scf107 100.0 True relocation, inconsistency = 2465453 65984669 65988870 354266 358467 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 84683740 84684710 358618 359587 NC_000014.9 scf107 99.79 True fake: not a misassembly (possible transposable element) 65989229 65997111 359588 367468 NC_000014.9 scf107 99.94 True relocation, inconsistency = -2467683 63529429 63530275 367469 368316 NC_000014.9 scf107 99.89 True relocation, inconsistency = 21161384 84691660 84695056 368317 371713 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 66000611 66006665 371714 377770 NC_000014.9 scf107 99.7 True fake: not a misassembly (possible transposable element) 84700395 84702839 377806 380250 NC_000014.9 scf107 99.96 True fake: not a misassembly (possible transposable element) 66008403 66009900 380251 381748 NC_000014.9 scf107 99.67 True fake: not a misassembly (possible transposable element) 84703624 84712887 381771 391030 NC_000014.9 scf107 99.79 True relocation, inconsistency = -18694484 66018404 66026707 391031 399334 NC_000014.9 scf107 99.95 True relocation, inconsistency = 18692667 84719375 84724040 399335 403999 NC_000014.9 scf107 99.89 True fake: not a misassembly (possible transposable element) 63558655 63559892 404288 405524 NC_000014.9 scf107 99.92 True fake: not a misassembly (possible transposable element) 84724824 84730070 405525 410767 NC_000014.9 scf107 99.85 True relocation, inconsistency = 34970764 49750190 49754059 414637 410768 NC_000014.9 scf107 99.82 True fake: not a misassembly (possible transposable element) 63565847 63567490 414638 416281 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49748959 49749666 416989 416282 NC_000014.9 scf107 99.86 True fake: not a misassembly (possible transposable element) 63567750 63569038 417424 418712 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49744309 49746667 422358 420000 NC_000014.9 scf107 99.96 True local misassembly 49740555 49744405 426919 423062 NC_000014.9 scf107 98.38 True fake: not a misassembly (possible transposable element) 63575610 63576762 427767 428919 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49733441 49739449 435735 428920 NC_000014.9 scf107 99.34 True fake: not a misassembly (possible transposable element) 63582241 63586126 435736 439620 NC_000014.9 scf107 99.97 True fake: not a misassembly (possible transposable element) 49727121 49731077 444011 440013 NC_000014.9 scf107 98.75 True relocation, scaffold gap is present, inconsistency = 13858027 63589609 63592437 444516 447342 NC_000014.9 scf107 99.79 True fake: scaffold gap size wrong estimation (local) 63592529 63593713 447558 448742 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49723092 49724410 450061 448743 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63594167 63600741 450112 456686 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49716391 49718072 458368 456687 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63601614 63602485 458369 459240 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63602964 63605541 460521 463098 NC_000014.9 scf107 100.0 True local misassembly 63605547 63607329 463961 465743 NC_000014.9 scf107 99.94 True fake: not a misassembly (possible transposable element) 49708159 49710965 468922 466116 NC_000014.9 scf107 99.89 True fake: not a misassembly (possible transposable element) 63609683 63610304 468924 469546 NC_000014.9 scf107 99.84 True fake: not a misassembly (possible transposable element) 49705840 49707294 472048 470594 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63612133 63615744 472049 475659 NC_000014.9 scf107 99.97 True local misassembly 63616539 63617097 476937 477495 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49700937 49701888 478986 478007 NC_000014.9 scf107 97.15 True fake: not a misassembly (possible transposable element) 63617658 63619965 478987 481294 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49698340 49698990 482309 481647 NC_000014.9 scf107 98.2 True fake: not a misassembly (possible transposable element) 63620172 63621486 482310 483623 NC_000014.9 scf107 99.92 True indel: indel (> 5bp) 63621984 63622490 484090 484596 NC_000014.9 scf107 100.0 True local misassembly 63622596 63623559 484597 485560 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49695173 49695937 486702 485938 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63623704 63624397 487021 487714 NC_000014.9 scf107 100.0 True local misassembly 63624871 63626101 487715 488945 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49691854 49693713 490828 488946 NC_000014.9 scf107 98.67 True fake: not a misassembly (possible transposable element) 63627233 63630175 490829 493771 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63630415 63634188 494708 498481 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49684892 49687515 501198 498577 NC_000014.9 scf107 99.89 True fake: not a misassembly (possible transposable element) 63636123 63636687 501199 501763 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63637305 63638027 502451 503173 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63639359 63640577 505667 506885 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63640578 63641097 507689 508208 NC_000014.9 scf107 100.0 True indel: indel (<= 5bp) 63641100 63643651 508209 510760 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49675993 49677758 512592 510827 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63644686 63649637 512593 517569 NC_000014.9 scf107 99.5 True fake: not a misassembly (possible transposable element) 49670326 49672561 519854 517619 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63651051 63651695 519861 520505 NC_000014.9 scf107 100.0 True relocation, scaffold gap is present, inconsistency = 13980515 49668025 49670225 523016 520816 NC_000014.9 scf107 100.0 True local misassembly 49667066 49667709 523660 523017 NC_000014.9 scf107 100.0 True relocation, scaffold gap is present, inconsistency = 13986272 63654306 63654880 523985 524559 NC_000014.9 scf107 100.0 True local misassembly 63655017 63655546 524560 525089 NC_000014.9 scf107 100.0 True relocation, inconsistency = 13988431 49665948 49666585 525727 525090 NC_000014.9 scf107 100.0 True local misassembly 49664361 49665823 527190 525728 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63656348 63658253 527195 529100 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49660929 49663265 531437 529101 NC_000014.9 scf107 100.0 True relocation, inconsistency = 13996562 63659828 63660368 531438 531978 NC_000014.9 scf107 100.0 True local misassembly 63660582 63661327 531979 532724 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49658281 49660449 534893 532725 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63662581 63665259 534894 537572 NC_000014.9 scf107 99.96 True local misassembly 63665288 63666902 538355 539969 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49652309 49655555 543838 540591 NC_000014.9 scf107 99.97 True fake: not a misassembly (possible transposable element) 63669971 63671154 544638 545821 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63671226 63673431 547535 549740 NC_000014.9 scf107 100.0 True indel: indel (> 5bp) 63673432 63674550 549749 550867 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49646328 49646827 551367 550868 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63674488 63676806 551656 553972 NC_000014.9 scf107 99.91 True fake: scaffold gap size wrong estimation (local) 63676715 63677812 554867 555964 NC_000014.9 scf107 100.0 True relocation, inconsistency = 14033236 49642773 49643478 556669 555965 NC_000014.9 scf107 99.86 True local misassembly 49640620 49642114 558444 556950 NC_000014.9 scf107 100.0 True relocation, inconsistency = 14037076 63679191 63679943 558445 559197 NC_000014.9 scf107 100.0 True local misassembly 63680492 63689818 559198 568524 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49632592 49633157 569427 568863 NC_000014.9 scf107 99.82 True fake: not a misassembly (possible transposable element) 63689967 63693726 569428 573187 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63694216 63695157 574035 574976 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49626822 49629119 577287 574990 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63696546 63703550 577288 584292 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49619439 49621608 586462 584293 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63705036 63707638 586487 589089 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49615540 49617555 591129 589114 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63708837 63709381 591130 591674 NC_000014.9 scf107 100.0 True local misassembly 63709635 63711040 591675 593080 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49613339 49614356 594098 593081 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63711986 63712733 594916 595663 NC_000014.9 scf107 99.87 True relocation, inconsistency = 14099366 49610800 49612619 597483 595664 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 49609504 49610828 599706 598382 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 49607045 49608456 603057 601646 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63718324 63718954 603126 603756 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49604137 49606228 606782 604691 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63721467 63722406 606783 607722 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49599910 49603537 611753 608132 NC_000014.9 scf107 99.78 True fake: scaffold gap size wrong estimation (local) 49597161 49599330 615310 613141 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63727446 63728102 615311 615967 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49595873 49596935 617496 616434 NC_000014.9 scf107 100.0 True local misassembly 49593693 49595077 619496 618112 NC_000014.9 scf107 100.0 True relocation, scaffold gap is present, inconsistency = 14134543 63730407 63731350 620283 621226 NC_000014.9 scf107 100.0 True local misassembly 63731927 63732863 621227 622163 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49590345 49592409 624863 622799 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63734660 63735417 624864 625621 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63735338 63736883 626947 628492 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63739026 63740785 630835 632594 NC_000014.9 scf107 100.0 True relocation, inconsistency = 14154877 49582011 49584148 634732 632595 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 49578567 49581789 638891 635796 NC_000014.9 scf107 96.06 True fake: not a misassembly (possible transposable element) 63745096 63746836 639176 640916 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49575146 49577345 643116 640917 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 63748073 63749386 643117 644430 NC_000014.9 scf107 99.54 True fake: not a misassembly (possible transposable element) 49568820 49574564 650900 644431 NC_000014.9 scf107 98.54 True fake: not a misassembly (possible transposable element) 63753968 63757774 652228 656050 NC_000014.9 scf107 99.58 True fake: not a misassembly (possible transposable element) 49564283 49565284 657051 656051 NC_000014.9 scf107 99.9 True relocation, inconsistency = 14192552 63757837 63759144 657052 658359 NC_000014.9 scf107 100.0 True local misassembly 63759643 63760258 658360 658975 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63760713 63762593 660705 662585 NC_000014.9 scf107 99.89 True indel: indel (<= 5bp) 63762596 63764556 662586 664546 NC_000014.9 scf107 99.95 True indel: indel (<= 5bp) 63764557 63765412 664548 665403 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 63765413 63766220 666157 666964 NC_000014.9 scf107 96.66 True local misassembly 63767146 63769683 667913 670450 NC_000014.9 scf107 100.0 True fake: not a misassembly (possible transposable element) 49552578 49554702 672576 670452 NC_000014.9 scf107 99.95 True fake: not a misassembly (possible transposable element) 63770751 63782141 672577 683528 NC_000014.9 scf107 95.92 True fake: not a misassembly (possible transposable element) 49537853 49544028 689704 683529 NC_000014.9 scf107 99.9 True fake: not a misassembly (possible transposable element) 63786304 63791716 689705 695127 NC_000014.9 scf107 99.69 True fake: not a misassembly (possible transposable element) 49531662 49533695 697161 695128 NC_000014.9 scf107 99.95 True fake: not a misassembly (possible transposable element) 63793042 63799274 697162 703395 NC_000014.9 scf107 99.74 True fake: not a misassembly (possible transposable element) 49525143 49527102 705355 703396 NC_000014.9 scf107 99.9 True fake: not a misassembly (possible transposable element) 63800495 63801452 705356 706313 NC_000014.9 scf107 99.79 True relocation, inconsistency = 14275552 49509539 49524942 723231 706314 NC_000014.9 scf107 98.81 True fake: scaffold gap size wrong estimation (local) 49495509 49509631 741132 724489 NC_000014.9 scf107 99.47 True fake: scaffold gap size wrong estimation (local) 49483552 49495598 755873 741827 NC_000014.9 scf107 98.87 True fake: scaffold gap size wrong estimation (local) 49474113 49483649 766099 756523 NC_000014.9 scf107 99.46 True fake: scaffold gap size wrong estimation (local) 49467996 49474210 773790 766698 NC_000014.9 scf107 99.85 True fake: scaffold gap size wrong estimation (local) 49447125 49467533 796676 775076 NC_000014.9 scf107 99.46 True fake: scaffold gap size wrong estimation (local) 49443930 49447223 800605 797316 NC_000014.9 scf107 99.85 True fake: scaffold gap size wrong estimation (local) 49442814 49443967 802416 801263 NC_000014.9 scf107 99.83 True fake: scaffold gap size wrong estimation (local) 49440153 49442552 805093 802694 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 49436340 49440231 809715 805825 NC_000014.9 scf107 99.85 True fake: scaffold gap size wrong estimation (local) 49416671 49435894 830865 810887 NC_000014.9 scf107 99.59 True fake: scaffold gap size wrong estimation (local) 49415526 49416770 832872 831628 NC_000014.9 scf107 99.92 True local misassembly 49412270 49415338 835967 832899 NC_000014.9 scf107 99.97 True fake: scaffold gap size wrong estimation (local) 49398350 49412368 850657 836640 NC_000014.9 scf107 99.92 True fake: scaffold gap size wrong estimation (local) 49396610 49398445 853177 851342 NC_000014.9 scf107 100.0 True fake: scaffold gap size wrong estimation (local) 49388631 49393741 864592 857572 NC_000014.9 scf107 95.34 True fake: scaffold gap size wrong estimation (local) 49386313 49388728 867875 865522 NC_000014.9 scf107 97.43 True fake: scaffold gap size wrong estimation (local) 49381408 49386359 873656 868697 NC_000014.9 scf107 99.7 True fake: scaffold gap size wrong estimation (local) 49376181 49381506 879592 874267 NC_000014.9 scf107 99.96 True fake: scaffold gap size wrong estimation (local) 49369807 49375826 886794 880712 NC_000014.9 scf107 98.85 True fake: scaffold gap size wrong estimation (local) 49367496 49369609 889809 887695 NC_000014.9 scf107 99.91 True fake: scaffold gap size wrong estimation (local) 49362325 49367592 895841 890548 NC_000014.9 scf107 99.41 True CONTIG scf107 897808 misassembled 62516991 62521723 4764 1 NC_000014.9 scf108 99.24 True fake: scaffold gap size wrong estimation (local) 62513614 62517057 8916 5473 NC_000014.9 scf108 99.91 True fake: scaffold gap size wrong estimation (local) 62510322 62513691 12985 9614 NC_000014.9 scf108 99.82 True fake: scaffold gap size wrong estimation (local) 62495350 62510407 28683 13626 NC_000014.9 scf108 99.93 True fake: scaffold gap size wrong estimation (local) 62473344 62494805 52133 29906 NC_000014.9 scf108 99.74 True fake: scaffold gap size wrong estimation (local) 62452272 62473259 73955 52958 NC_000014.9 scf108 99.77 True fake: scaffold gap size wrong estimation (local) 62448383 62452325 78594 74658 NC_000014.9 scf108 99.44 True fake: scaffold gap size wrong estimation (local) 62446679 62448089 81094 79690 NC_000014.9 scf108 99.5 True fake: scaffold gap size wrong estimation (local) 62429158 62446475 100103 82021 NC_000014.9 scf108 99.65 True fake: scaffold gap size wrong estimation (local) 62407014 62429244 124494 100757 NC_000014.9 scf108 99.81 True fake: scaffold gap size wrong estimation (local) 62406065 62407088 126217 125194 NC_000014.9 scf108 100.0 True fake: scaffold gap size wrong estimation (local) 62401091 62406160 132364 127294 NC_000014.9 scf108 99.94 True fake: scaffold gap size wrong estimation (local) 62397243 62401185 136952 133010 NC_000014.9 scf108 99.92 True fake: scaffold gap size wrong estimation (local) 62394529 62395732 140369 139166 NC_000014.9 scf108 99.92 True fake: scaffold gap size wrong estimation (local) 62390351 62394301 145405 141455 NC_000014.9 scf108 99.92 True fake: scaffold gap size wrong estimation (local) 62387439 62390444 149058 146053 NC_000014.9 scf108 99.93 True fake: scaffold gap size wrong estimation (local) 62385208 62387535 152069 149741 NC_000014.9 scf108 99.83 True fake: scaffold gap size wrong estimation (local) 62367542 62385301 171250 152500 NC_000014.9 scf108 99.88 True fake: scaffold gap size wrong estimation (local) 62351818 62366978 187689 172531 NC_000014.9 scf108 99.76 True fake: scaffold gap size wrong estimation (local) 62342578 62351317 198386 188915 NC_000014.9 scf108 99.74 True CONTIG scf108 198386 correct 60882099 60887428 5329 1 NC_000014.9 scf109 99.89 True fake: scaffold gap size wrong estimation (local) 60872836 60882191 15406 6223 NC_000014.9 scf109 96.23 True fake: scaffold gap size wrong estimation (local) 60871788 60872672 17238 16354 NC_000014.9 scf109 100.0 True local misassembly 60869272 60871570 19537 17239 NC_000014.9 scf109 99.91 True fake: scaffold gap size wrong estimation (local) 60858029 60869015 31568 20633 NC_000014.9 scf109 99.03 True fake: scaffold gap size wrong estimation (local) 60856920 60857879 32994 32035 NC_000014.9 scf109 99.9 True fake: scaffold gap size wrong estimation (local) 60853746 60856676 37102 34172 NC_000014.9 scf109 99.9 True local misassembly 60852767 60853398 37924 37293 NC_000014.9 scf109 100.0 True fake: scaffold gap size wrong estimation (local) 60834807 60852788 58370 38828 NC_000014.9 scf109 99.27 True fake: scaffold gap size wrong estimation (local) 60833385 60834883 60670 59172 NC_000014.9 scf109 100.0 True fake: scaffold gap size wrong estimation (local) 60832328 60833079 61565 60814 NC_000014.9 scf109 100.0 True fake: scaffold gap size wrong estimation (local) 60811306 60831372 85325 63767 NC_000014.9 scf109 99.69 True fake: scaffold gap size wrong estimation (local) 60802935 60811371 94424 85983 NC_000014.9 scf109 99.87 True fake: scaffold gap size wrong estimation (local) 60772358 60802982 127885 95095 NC_000014.9 scf109 99.24 True fake: scaffold gap size wrong estimation (local) 60762498 60772441 139124 128525 NC_000014.9 scf109 98.92 True fake: scaffold gap size wrong estimation (local) 60758439 60762596 143966 139809 NC_000014.9 scf109 99.93 True fake: scaffold gap size wrong estimation (local) 60754552 60758535 148641 144635 NC_000014.9 scf109 99.35 True fake: scaffold gap size wrong estimation (local) 60750544 60754359 153356 149541 NC_000014.9 scf109 99.95 True fake: scaffold gap size wrong estimation (local) 60747206 60750362 157914 154320 NC_000014.9 scf109 97.2 True fake: scaffold gap size wrong estimation (local) 60746248 60746908 159218 158560 NC_000014.9 scf109 99.7 True fake: scaffold gap size wrong estimation (local) 60738019 60746346 168901 159708 NC_000014.9 scf109 98.3 True fake: scaffold gap size wrong estimation (local) 60731405 60737980 176283 169708 NC_000014.9 scf109 99.95 True fake: scaffold gap size wrong estimation (local) 60714967 60730584 194921 177841 NC_000014.9 scf109 95.57 True fake: scaffold gap size wrong estimation (local) 60711759 60714845 198947 195861 NC_000014.9 scf109 99.9 True fake: scaffold gap size wrong estimation (local) 60708361 60711604 203130 199881 NC_000014.9 scf109 99.63 True fake: scaffold gap size wrong estimation (local) 60705739 60708456 206562 203845 NC_000014.9 scf109 99.96 True fake: scaffold gap size wrong estimation (local) 60693692 60705487 222755 207526 NC_000014.9 scf109 97.7 True fake: scaffold gap size wrong estimation (local) 60690413 60692624 226949 224628 NC_000014.9 scf109 95.84 True fake: scaffold gap size wrong estimation (local) 60689206 60689929 229071 228348 NC_000014.9 scf109 100.0 True indel: indel (> 5bp) 60685993 60689205 232334 229122 NC_000014.9 scf109 99.97 True fake: scaffold gap size wrong estimation (local) 60684089 60685992 235027 233124 NC_000014.9 scf109 99.89 True local misassembly 60682809 60683818 236037 235028 NC_000014.9 scf109 100.0 True fake: scaffold gap size wrong estimation (local) 60682138 60682736 237961 237363 NC_000014.9 scf109 100.0 True local misassembly 60680617 60681806 239151 237962 NC_000014.9 scf109 99.83 True fake: scaffold gap size wrong estimation (local) 60679103 60680315 241839 240627 NC_000014.9 scf109 99.75 True local misassembly 60677404 60678788 243224 241840 NC_000014.9 scf109 100.0 True fake: scaffold gap size wrong estimation (local) 60676572 60677495 245180 244257 NC_000014.9 scf109 99.89 True local misassembly 60674339 60675884 246984 245439 NC_000014.9 scf109 99.81 True fake: scaffold gap size wrong estimation (local) 60672585 60673756 249653 248482 NC_000014.9 scf109 99.23 True fake: scaffold gap size wrong estimation (local) 60670004 60671449 253072 251609 NC_000014.9 scf109 98.77 True fake: scaffold gap size wrong estimation (local) 60667664 60670088 256234 253812 NC_000014.9 scf109 99.88 True fake: scaffold gap size wrong estimation (local) 60650525 60667503 276696 257132 NC_000014.9 scf109 99.8 True fake: scaffold gap size wrong estimation (local) 60635239 60650608 292741 277370 NC_000014.9 scf109 99.86 True fake: scaffold gap size wrong estimation (local) 60633615 60635072 295243 293787 NC_000014.9 scf109 99.66 True fake: scaffold gap size wrong estimation (local) 60627450 60633709 302348 295946 NC_000014.9 scf109 97.93 True fake: scaffold gap size wrong estimation (local) 60626426 60627543 304179 303063 NC_000014.9 scf109 99.73 True fake: scaffold gap size wrong estimation (local) 60624858 60626075 305909 304694 NC_000014.9 scf109 99.67 True fake: scaffold gap size wrong estimation (local) 60620365 60624914 311563 307016 NC_000014.9 scf109 99.82 True fake: scaffold gap size wrong estimation (local) 60618836 60620460 313880 312256 NC_000014.9 scf109 99.94 True fake: scaffold gap size wrong estimation (local) 60614852 60618916 318705 314644 NC_000014.9 scf109 99.8 True fake: scaffold gap size wrong estimation (local) 60613158 60614944 321192 319406 NC_000014.9 scf109 99.94 True fake: scaffold gap size wrong estimation (local) 60608437 60611759 326561 323238 NC_000014.9 scf109 99.88 True fake: scaffold gap size wrong estimation (local) 60606021 60608509 329710 327273 NC_000014.9 scf109 97.67 True fake: scaffold gap size wrong estimation (local) 60596593 60604626 340647 331860 NC_000014.9 scf109 99.77 True fake: scaffold gap size wrong estimation (local) 60595491 60596683 342369 341171 NC_000014.9 scf109 99.42 True fake: scaffold gap size wrong estimation (local) 60591962 60595580 347772 343296 NC_000014.9 scf109 99.94 True fake: scaffold gap size wrong estimation (local) 60590689 60591752 349009 347946 NC_000014.9 scf109 99.91 True fake: scaffold gap size wrong estimation (local) 60583753 60590010 357202 350830 NC_000014.9 scf109 98.3 True fake: scaffold gap size wrong estimation (local) 60575570 60582402 366046 359230 NC_000014.9 scf109 99.61 True fake: scaffold gap size wrong estimation (local) 60571914 60575653 370453 366711 NC_000014.9 scf109 99.79 True fake: scaffold gap size wrong estimation (local) 60567493 60571979 375622 371145 NC_000014.9 scf109 99.67 True fake: scaffold gap size wrong estimation (local) 60559805 60567589 384102 376316 NC_000014.9 scf109 99.76 True fake: scaffold gap size wrong estimation (local) 60555014 60559902 389636 384742 NC_000014.9 scf109 99.67 True fake: scaffold gap size wrong estimation (local) 60538371 60555104 407837 390355 NC_000014.9 scf109 99.84 True fake: scaffold gap size wrong estimation (local) 60531525 60538081 415429 408873 NC_000014.9 scf109 99.8 True fake: scaffold gap size wrong estimation (local) 60526384 60531623 421366 416095 NC_000014.9 scf109 99.26 True fake: scaffold gap size wrong estimation (local) 60525312 60526078 422934 422168 NC_000014.9 scf109 99.74 True fake: scaffold gap size wrong estimation (local) 60478179 60524152 474250 425061 NC_000014.9 scf109 99.56 True fake: scaffold gap size wrong estimation (local) 60475149 60478009 478116 475256 NC_000014.9 scf109 99.72 True CONTIG scf109 478116 correct 55811200 55811804 1 625 NC_000014.9 scf110 96.8 True fake: scaffold gap size wrong estimation (local) 55813375 55833608 2910 23143 NC_000014.9 scf110 99.93 True fake: scaffold gap size wrong estimation (local) 55833514 55838402 23768 29396 NC_000014.9 scf110 99.01 True fake: scaffold gap size wrong estimation (local) 55838304 55840811 30147 32570 NC_000014.9 scf110 96.33 True fake: scaffold gap size wrong estimation (local) 55840714 55842088 33511 34885 NC_000014.9 scf110 100.0 True fake: scaffold gap size wrong estimation (local) 55841990 55851316 35600 45732 NC_000014.9 scf110 98.55 True fake: scaffold gap size wrong estimation (local) 55851233 55853131 46520 48418 NC_000014.9 scf110 100.0 True fake: scaffold gap size wrong estimation (local) 55853037 55862068 49132 58860 NC_000014.9 scf110 98.22 True fake: scaffold gap size wrong estimation (local) 55863438 55871897 60921 69380 NC_000014.9 scf110 99.98 True fake: scaffold gap size wrong estimation (local) 55871801 55883706 70045 81948 NC_000014.9 scf110 99.96 True fake: scaffold gap size wrong estimation (local) 55883907 55887333 82910 86336 NC_000014.9 scf110 100.0 True fake: scaffold gap size wrong estimation (local) 55887619 55890094 87412 89887 NC_000014.9 scf110 99.96 True fake: scaffold gap size wrong estimation (local) 55890020 55918737 90576 120069 NC_000014.9 scf110 99.85 True fake: scaffold gap size wrong estimation (local) 55919846 55947256 121855 150053 NC_000014.9 scf110 99.69 True fake: scaffold gap size wrong estimation (local) 55947204 55950779 150831 154406 NC_000014.9 scf110 99.97 True fake: scaffold gap size wrong estimation (local) 55950683 55955324 155088 159729 NC_000014.9 scf110 100.0 True fake: scaffold gap size wrong estimation (local) 55955227 55976079 160438 181290 NC_000014.9 scf110 100.0 True fake: scaffold gap size wrong estimation (local) 55975987 55988263 181974 194250 NC_000014.9 scf110 100.0 True CONTIG scf110 194250 correct 41675520 41689700 1 14181 NC_000014.9 scf111 99.97 True fake: scaffold gap size wrong estimation (local) 41689897 41692675 15056 17834 NC_000014.9 scf111 100.0 True fake: scaffold gap size wrong estimation (local) 41692622 41715921 18565 42684 NC_000014.9 scf111 99.97 True fake: scaffold gap size wrong estimation (local) 41715827 41731130 43757 59100 NC_000014.9 scf111 99.74 True fake: scaffold gap size wrong estimation (local) 41731036 41735749 59760 65265 NC_000014.9 scf111 100.0 True fake: scaffold gap size wrong estimation (local) 41736013 41736751 66023 66772 NC_000014.9 scf111 98.53 True fake: scaffold gap size wrong estimation (local) 41736871 41737505 67377 68011 NC_000014.9 scf111 99.84 True fake: scaffold gap size wrong estimation (local) 41737744 41739415 68892 70589 NC_000014.9 scf111 98.47 True fake: scaffold gap size wrong estimation (local) 41739328 41742792 71412 74897 NC_000014.9 scf111 99.37 True fake: scaffold gap size wrong estimation (local) 41742699 41752070 75598 84974 NC_000014.9 scf111 99.57 True CONTIG scf111 85087 correct 60426103 60426657 1 555 NC_000014.9 scf112 99.64 True fake: scaffold gap size wrong estimation (local) 60427163 60433669 2102 8634 NC_000014.9 scf112 99.59 True fake: scaffold gap size wrong estimation (local) 60434933 60439847 10600 15514 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60439963 60444020 16386 20443 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60443942 60444733 21284 22075 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60444919 60445566 22437 23084 NC_000014.9 scf112 100.0 True local misassembly 60445982 60446782 23085 23885 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60447494 60448023 24768 25297 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60448686 60451257 26965 29536 NC_000014.9 scf112 100.0 True fake: scaffold gap size wrong estimation (local) 60452013 60472525 31034 51530 NC_000014.9 scf112 99.77 True CONTIG scf112 51530 correct 104123730 104127684 1 3955 NC_000014.9 scf113 99.9 True fake: scaffold gap size wrong estimation (local) 104128109 104130639 5159 7685 NC_000014.9 scf113 99.6 True fake: scaffold gap size wrong estimation (local) 104130542 104162117 8473 42394 NC_000014.9 scf113 99.36 True fake: scaffold gap size wrong estimation (local) 104162020 104185850 43057 68339 NC_000014.9 scf113 99.53 True fake: scaffold gap size wrong estimation (local) 104185941 104203761 69165 87037 NC_000014.9 scf113 99.4 True fake: scaffold gap size wrong estimation (local) 104204963 104206762 88942 90741 NC_000014.9 scf113 99.83 True indel: indel (<= 5bp) 104206765 104207944 90742 91921 NC_000014.9 scf113 99.75 True fake: scaffold gap size wrong estimation (local) 104209396 104211626 94189 96419 NC_000014.9 scf113 99.82 True fake: scaffold gap size wrong estimation (local) 104211730 104215372 97387 101021 NC_000014.9 scf113 98.47 True fake: scaffold gap size wrong estimation (local) 104215497 104217019 103071 104599 NC_000014.9 scf113 98.82 True fake: scaffold gap size wrong estimation (local) 104217477 104222091 105995 110609 NC_000014.9 scf113 99.87 True fake: scaffold gap size wrong estimation (local) 104222003 104225214 111363 114573 NC_000014.9 scf113 99.94 True fake: scaffold gap size wrong estimation (local) 104226064 104231903 116062 121901 NC_000014.9 scf113 100.0 True fake: scaffold gap size wrong estimation (local) 104233613 104235498 124724 126609 NC_000014.9 scf113 100.0 True fake: scaffold gap size wrong estimation (local) 104235516 104236369 127913 128766 NC_000014.9 scf113 99.88 True local misassembly 104236900 104238461 128767 130328 NC_000014.9 scf113 99.55 True fake: scaffold gap size wrong estimation (local) 104239644 104241317 132233 133906 NC_000014.9 scf113 99.58 True fake: scaffold gap size wrong estimation (local) 104242095 104242673 135774 136352 NC_000014.9 scf113 100.0 True local misassembly 104243030 104243854 136353 137177 NC_000014.9 scf113 99.88 True indel: indel (<= 5bp) 104243855 104247305 137181 140631 NC_000014.9 scf113 99.88 True fake: scaffold gap size wrong estimation (local) 104247206 104250885 141278 144957 NC_000014.9 scf113 99.86 True CONTIG scf113 144976 correct 104251914 104254637 1 2724 NC_000014.9 scf114 99.78 True fake: scaffold gap size wrong estimation (local) 104254546 104255557 3360 4371 NC_000014.9 scf114 100.0 True indel: indel (> 5bp) 104256007 104257485 4859 6337 NC_000014.9 scf114 99.8 True fake: scaffold gap size wrong estimation (local) 104257486 104258211 7016 7741 NC_000014.9 scf114 98.21 True fake: scaffold gap size wrong estimation (local) 104258212 104262307 8074 12169 NC_000014.9 scf114 99.95 True fake: scaffold gap size wrong estimation (local) 104262212 104264376 12865 15029 NC_000014.9 scf114 99.45 True local misassembly 104264609 104265467 15030 15888 NC_000014.9 scf114 99.88 True fake: scaffold gap size wrong estimation (local) 104265468 104266892 16897 18321 NC_000014.9 scf114 99.72 True local misassembly 104267075 104268690 18322 19937 NC_000014.9 scf114 99.94 True fake: scaffold gap size wrong estimation (local) 104268950 104270122 21762 22934 NC_000014.9 scf114 99.49 True fake: scaffold gap size wrong estimation (local) 104271056 104274043 24742 27729 NC_000014.9 scf114 99.93 True fake: scaffold gap size wrong estimation (local) 104273952 104276278 28434 30760 NC_000014.9 scf114 99.96 True fake: scaffold gap size wrong estimation (local) 104276227 104298886 31519 54933 NC_000014.9 scf114 99.39 True fake: scaffold gap size wrong estimation (local) 104299325 104300903 56234 57812 NC_000014.9 scf114 100.0 True fake: scaffold gap size wrong estimation (local) 104301182 104310458 58965 69774 NC_000014.9 scf114 99.2 True fake: scaffold gap size wrong estimation (local) 104310656 104324876 70807 85054 NC_000014.9 scf114 99.71 True fake: scaffold gap size wrong estimation (local) 104325532 104329287 86254 90029 NC_000014.9 scf114 99.47 True fake: scaffold gap size wrong estimation (local) 104329193 104332771 90660 94238 NC_000014.9 scf114 99.86 True fake: scaffold gap size wrong estimation (local) 104332692 104344546 94991 106845 NC_000014.9 scf114 99.92 True fake: scaffold gap size wrong estimation (local) 104344461 104347906 107527 110972 NC_000014.9 scf114 100.0 True fake: scaffold gap size wrong estimation (local) 104347810 104354800 111654 118644 NC_000014.9 scf114 99.99 True fake: scaffold gap size wrong estimation (local) 104355015 104366243 119667 130895 NC_000014.9 scf114 99.98 True fake: scaffold gap size wrong estimation (local) 104366144 104374028 131536 139420 NC_000014.9 scf114 99.99 True fake: scaffold gap size wrong estimation (local) 104373975 104394410 140207 160572 NC_000014.9 scf114 99.54 True fake: scaffold gap size wrong estimation (local) 104394320 104400876 161251 167803 NC_000014.9 scf114 99.69 True fake: scaffold gap size wrong estimation (local) 104400778 104407483 168496 175201 NC_000014.9 scf114 99.99 True fake: scaffold gap size wrong estimation (local) 104407384 104409705 175885 178206 NC_000014.9 scf114 100.0 True fake: scaffold gap size wrong estimation (local) 104409653 104412143 179026 181516 NC_000014.9 scf114 100.0 True CONTIG scf114 181516 correct 63802213 63802787 1 575 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 63804120 63804838 3293 4011 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 63805611 63807775 5856 8021 NC_000014.9 scf115 99.72 True fake: scaffold gap size wrong estimation (local) 63809338 63810895 10300 11857 NC_000014.9 scf115 99.81 True fake: scaffold gap size wrong estimation (local) 63811224 63812234 13231 14241 NC_000014.9 scf115 99.9 True local misassembly 63812733 63813844 14453 15564 NC_000014.9 scf115 99.73 True fake: scaffold gap size wrong estimation (local) 63815307 63816286 17997 18976 NC_000014.9 scf115 99.9 True local misassembly 63816733 63818024 18977 20268 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 63819096 63819621 22298 22823 NC_000014.9 scf115 100.0 True local misassembly 63819861 63820754 22824 23717 NC_000014.9 scf115 99.89 True fake: scaffold gap size wrong estimation (local) 63820755 63821759 24249 25253 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 63821667 63827292 26197 32570 NC_000014.9 scf115 95.91 True fake: scaffold gap size wrong estimation (local) 63827640 63829890 33861 36065 NC_000014.9 scf115 97.91 True fake: scaffold gap size wrong estimation (local) 63829802 63836047 36812 44301 NC_000014.9 scf115 97.42 True fake: scaffold gap size wrong estimation (local) 63835984 63837897 45018 46931 NC_000014.9 scf115 99.85 True relocation, inconsistency = -6692195 57145703 57150297 46932 51534 NC_000014.9 scf115 99.83 True fake: scaffold gap size wrong estimation (local) 57150267 57151880 52265 53878 NC_000014.9 scf115 100.0 True fake: not a misassembly (possible transposable element) 63842674 63845331 53879 56536 NC_000014.9 scf115 99.85 True fake: not a misassembly (possible transposable element) 57153725 57166219 56537 69031 NC_000014.9 scf115 99.99 True relocation, inconsistency = 6687903 63854123 63858289 69032 73199 NC_000014.9 scf115 99.9 True relocation, inconsistency = 42615289 106473588 106476156 75777 73209 NC_000014.9 scf115 99.88 True fake: not a misassembly (possible transposable element) 57171485 57172659 75778 76952 NC_000014.9 scf115 100.0 True fake: not a misassembly (possible transposable element) 106472537 106473410 78022 77149 NC_000014.9 scf115 100.0 True local misassembly 106470770 106472142 79395 78023 NC_000014.9 scf115 99.93 True relocation, inconsistency = 42605913 63862956 63864856 79396 81296 NC_000014.9 scf115 99.42 True relocation, inconsistency = -6688632 57176225 57186376 81297 91448 NC_000014.9 scf115 100.0 True relocation, inconsistency = 49274379 106460762 106461461 92154 91455 NC_000014.9 scf115 99.86 True local misassembly 106459603 106460485 93037 92155 NC_000014.9 scf115 99.89 True relocation, inconsistency = 42582908 63874094 63876277 93455 95639 NC_000014.9 scf115 99.77 True fake: not a misassembly (possible transposable element) 57189832 57192010 95640 97818 NC_000014.9 scf115 100.0 True fake: not a misassembly (possible transposable element) 63877652 63880906 97819 101076 NC_000014.9 scf115 99.85 True relocation, inconsistency = 42571205 106452112 106453599 102564 101077 NC_000014.9 scf115 99.94 True fake: not a misassembly (possible transposable element) 57195293 57198438 102569 105714 NC_000014.9 scf115 100.0 True fake: not a misassembly (possible transposable element) 106447790 106449957 107882 105715 NC_000014.9 scf115 100.0 True relocation, inconsistency = 49246215 57200021 57201574 107883 109436 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57201825 57213551 110806 122532 NC_000014.9 scf115 100.0 True fake: not a misassembly (possible transposable element) 106430181 106436043 128877 123011 NC_000014.9 scf115 99.08 True fake: not a misassembly (possible transposable element) 57219147 57225023 128878 134754 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57224930 57228500 135355 138944 NC_000014.9 scf115 99.44 True fake: scaffold gap size wrong estimation (local) 57228408 57236523 139506 147620 NC_000014.9 scf115 99.98 True fake: scaffold gap size wrong estimation (local) 57236440 57238223 148274 150057 NC_000014.9 scf115 99.94 True fake: scaffold gap size wrong estimation (local) 57238324 57240447 151011 153134 NC_000014.9 scf115 98.31 True local misassembly 57240852 57242007 153135 154290 NC_000014.9 scf115 99.91 True fake: scaffold gap size wrong estimation (local) 57242134 57244807 155452 158125 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57245014 57249897 159194 163947 NC_000014.9 scf115 97.34 True fake: scaffold gap size wrong estimation (local) 57249799 57258259 164612 173072 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57258393 57263231 173987 178827 NC_000014.9 scf115 99.94 True fake: scaffold gap size wrong estimation (local) 57263722 57280645 180056 197712 NC_000014.9 scf115 99.48 True fake: scaffold gap size wrong estimation (local) 57280579 57300844 198433 218679 NC_000014.9 scf115 99.88 True fake: scaffold gap size wrong estimation (local) 57300784 57310742 219329 229278 NC_000014.9 scf115 99.81 True fake: scaffold gap size wrong estimation (local) 57310643 57311551 229971 230879 NC_000014.9 scf115 99.89 True fake: scaffold gap size wrong estimation (local) 57311733 57313102 231026 232396 NC_000014.9 scf115 99.71 True fake: scaffold gap size wrong estimation (local) 57313021 57321087 233136 241925 NC_000014.9 scf115 99.79 True fake: scaffold gap size wrong estimation (local) 57320996 57323227 242635 244864 NC_000014.9 scf115 99.91 True fake: scaffold gap size wrong estimation (local) 57323178 57324624 245732 247177 NC_000014.9 scf115 99.86 True fake: scaffold gap size wrong estimation (local) 57324552 57327861 248779 253225 NC_000014.9 scf115 96.07 True fake: scaffold gap size wrong estimation (local) 57327974 57332193 254154 258373 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57332118 57333173 259203 260258 NC_000014.9 scf115 100.0 True fake: scaffold gap size wrong estimation (local) 57334372 57336221 262376 264243 NC_000014.9 scf115 99.04 True fake: scaffold gap size wrong estimation (local) 57336885 57338171 266252 267565 NC_000014.9 scf115 97.79 True CONTIG scf115 267565 misassembled 33114196 33123339 1 9144 NC_000014.9 scf116 99.93 True fake: scaffold gap size wrong estimation (local) 33123245 33138791 9780 25348 NC_000014.9 scf116 99.71 True fake: scaffold gap size wrong estimation (local) 33138700 33142958 26037 30295 NC_000014.9 scf116 99.86 True fake: scaffold gap size wrong estimation (local) 33142870 33145178 30973 33281 NC_000014.9 scf116 99.87 True fake: scaffold gap size wrong estimation (local) 33145080 33159653 34008 50103 NC_000014.9 scf116 99.51 True fake: scaffold gap size wrong estimation (local) 33159789 33177137 51142 68303 NC_000014.9 scf116 98.77 True fake: scaffold gap size wrong estimation (local) 33177078 33180616 68965 72503 NC_000014.9 scf116 99.97 True fake: scaffold gap size wrong estimation (local) 33180803 33183242 73495 75934 NC_000014.9 scf116 99.88 True fake: scaffold gap size wrong estimation (local) 33183424 33203577 76938 97100 NC_000014.9 scf116 99.85 True fake: scaffold gap size wrong estimation (local) 33203991 33223196 98233 117427 NC_000014.9 scf116 99.8 True fake: scaffold gap size wrong estimation (local) 33223098 33246362 118115 142139 NC_000014.9 scf116 99.79 True fake: scaffold gap size wrong estimation (local) 33246866 33262891 143324 160846 NC_000014.9 scf116 99.6 True fake: scaffold gap size wrong estimation (local) 33263987 33272571 162662 171245 NC_000014.9 scf116 99.88 True fake: scaffold gap size wrong estimation (local) 33272477 33307612 171937 209425 NC_000014.9 scf116 99.47 True fake: scaffold gap size wrong estimation (local) 33307556 33308526 211142 212124 NC_000014.9 scf116 98.68 True fake: scaffold gap size wrong estimation (local) 33308484 33322535 213046 227088 NC_000014.9 scf116 99.74 True fake: scaffold gap size wrong estimation (local) 33322439 33346082 227726 252868 NC_000014.9 scf116 99.56 True fake: scaffold gap size wrong estimation (local) 33346530 33355362 254091 262923 NC_000014.9 scf116 99.8 True fake: scaffold gap size wrong estimation (local) 33355263 33364010 263574 272326 NC_000014.9 scf116 99.78 True fake: scaffold gap size wrong estimation (local) 33363923 33365201 273116 274394 NC_000014.9 scf116 100.0 True local misassembly 33365365 33366387 274417 275439 NC_000014.9 scf116 99.71 True fake: scaffold gap size wrong estimation (local) 33366291 33378902 276325 290489 NC_000014.9 scf116 96.36 True fake: scaffold gap size wrong estimation (local) 33378803 33406784 291143 320669 NC_000014.9 scf116 99.62 True fake: scaffold gap size wrong estimation (local) 33406712 33410862 321375 325525 NC_000014.9 scf116 99.95 True fake: scaffold gap size wrong estimation (local) 33411344 33429388 326742 344786 NC_000014.9 scf116 99.94 True fake: scaffold gap size wrong estimation (local) 33429291 33446243 345459 364442 NC_000014.9 scf116 98.56 True fake: scaffold gap size wrong estimation (local) 33446385 33451087 365372 370074 NC_000014.9 scf116 99.85 True fake: scaffold gap size wrong estimation (local) 33450992 33452603 370762 372373 NC_000014.9 scf116 99.94 True fake: scaffold gap size wrong estimation (local) 33452506 33475955 373173 396628 NC_000014.9 scf116 99.84 True fake: scaffold gap size wrong estimation (local) 33475856 33479857 397281 401282 NC_000014.9 scf116 99.9 True fake: scaffold gap size wrong estimation (local) 33479766 33496283 401975 418462 NC_000014.9 scf116 99.59 True fake: scaffold gap size wrong estimation (local) 33497677 33498538 420548 421425 NC_000014.9 scf116 98.18 True CONTIG scf116 421425 correct 57647227 57667659 3395 23865 NC_000014.9 scf117 99.5 True fake: scaffold gap size wrong estimation (local) 57669112 57669720 26180 26788 NC_000014.9 scf117 98.36 True CONTIG scf117 26788 correct 62853904 62860302 13 6433 NC_000014.9 scf118 99.63 True fake: scaffold gap size wrong estimation (local) 62860209 62873093 7109 20655 NC_000014.9 scf118 97.99 True fake: scaffold gap size wrong estimation (local) 62873042 62874458 21456 22872 NC_000014.9 scf118 100.0 True fake: scaffold gap size wrong estimation (local) 62875323 62876060 24790 25527 NC_000014.9 scf118 100.0 True local misassembly 62876429 62877194 25528 26293 NC_000014.9 scf118 99.87 True fake: scaffold gap size wrong estimation (local) 62878109 62886231 27900 37611 NC_000014.9 scf118 98.51 True fake: scaffold gap size wrong estimation (local) 62886139 62890504 38298 42663 NC_000014.9 scf118 99.91 True fake: scaffold gap size wrong estimation (local) 62890705 62893706 43633 46634 NC_000014.9 scf118 100.0 True fake: scaffold gap size wrong estimation (local) 62893610 62899641 47309 53340 NC_000014.9 scf118 99.92 True fake: scaffold gap size wrong estimation (local) 62899794 62902911 54249 57364 NC_000014.9 scf118 99.9 True fake: scaffold gap size wrong estimation (local) 62902855 62908809 58036 63990 NC_000014.9 scf118 99.97 True fake: scaffold gap size wrong estimation (local) 62909261 62911305 65217 67191 NC_000014.9 scf118 96.58 True fake: scaffold gap size wrong estimation (local) 62911590 62933542 68738 91595 NC_000014.9 scf118 98.1 True fake: scaffold gap size wrong estimation (local) 62933457 62936688 92329 95457 NC_000014.9 scf118 96.54 True CONTIG scf118 95457 correct 80593791 80594408 501 1118 NC_000014.9 scf119 100.0 True fake: scaffold gap size wrong estimation (local) 80595398 80596053 3203 3858 NC_000014.9 scf119 99.85 True indel: indel (<= 5bp) 80596055 80596819 3859 4623 NC_000014.9 scf119 99.87 True fake: scaffold gap size wrong estimation (local) 80596820 80597970 5544 6694 NC_000014.9 scf119 100.0 True indel: indel (<= 5bp) 80597972 80599288 6695 8011 NC_000014.9 scf119 99.92 True fake: scaffold gap size wrong estimation (local) 80599439 80602797 8968 12324 NC_000014.9 scf119 99.91 True fake: scaffold gap size wrong estimation (local) 80602706 80613028 12963 23284 NC_000014.9 scf119 99.91 True fake: scaffold gap size wrong estimation (local) 80613317 80615962 24305 26942 NC_000014.9 scf119 99.58 True fake: scaffold gap size wrong estimation (local) 80615865 80622400 27730 34849 NC_000014.9 scf119 95.07 True fake: scaffold gap size wrong estimation (local) 80623376 80626270 36552 39887 NC_000014.9 scf119 96.79 True fake: scaffold gap size wrong estimation (local) 80626806 80628839 40766 43868 NC_000014.9 scf119 98.88 True fake: scaffold gap size wrong estimation (local) 80628742 80633299 44700 49255 NC_000014.9 scf119 99.82 True fake: scaffold gap size wrong estimation (local) 80633201 80636288 49960 53078 NC_000014.9 scf119 98.88 True fake: scaffold gap size wrong estimation (local) 80636302 80637003 53993 54694 NC_000014.9 scf119 99.57 True local misassembly 80637207 80641038 54695 58526 NC_000014.9 scf119 99.84 True fake: scaffold gap size wrong estimation (local) 80641039 80641964 58758 59683 NC_000014.9 scf119 99.78 True fake: scaffold gap size wrong estimation (local) 80641918 80650071 60496 68665 NC_000014.9 scf119 98.94 True fake: scaffold gap size wrong estimation (local) 80649997 80657280 69437 77638 NC_000014.9 scf119 96.4 True fake: scaffold gap size wrong estimation (local) 80657210 80661200 78286 82336 NC_000014.9 scf119 98.44 True fake: scaffold gap size wrong estimation (local) 80661109 80667666 82963 89514 NC_000014.9 scf119 99.77 True fake: scaffold gap size wrong estimation (local) 80667813 80673455 90419 96059 NC_000014.9 scf119 99.82 True fake: scaffold gap size wrong estimation (local) 80673646 80676536 97011 99902 NC_000014.9 scf119 99.76 True fake: scaffold gap size wrong estimation (local) 80676453 80677526 101079 102152 NC_000014.9 scf119 99.91 True local misassembly 80678074 80679012 102204 103142 NC_000014.9 scf119 100.0 True fake: scaffold gap size wrong estimation (local) 80678933 80705448 104516 132572 NC_000014.9 scf119 99.39 True fake: scaffold gap size wrong estimation (local) 80705362 80722840 133171 151384 NC_000014.9 scf119 99.35 True fake: scaffold gap size wrong estimation (local) 80723022 80725199 152317 154494 NC_000014.9 scf119 100.0 True fake: scaffold gap size wrong estimation (local) 80725105 80732954 155189 163859 NC_000014.9 scf119 99.32 True fake: scaffold gap size wrong estimation (local) 80733355 80734666 165121 166432 NC_000014.9 scf119 99.85 True fake: scaffold gap size wrong estimation (local) 80734583 80740530 167220 173164 NC_000014.9 scf119 99.9 True fake: scaffold gap size wrong estimation (local) 80740438 80751728 173893 185086 NC_000014.9 scf119 99.1 True fake: scaffold gap size wrong estimation (local) 80751637 80758317 185746 193196 NC_000014.9 scf119 99.92 True fake: scaffold gap size wrong estimation (local) 80758523 80762376 194143 197992 NC_000014.9 scf119 99.82 True fake: scaffold gap size wrong estimation (local) 80762289 80764305 198733 200749 NC_000014.9 scf119 99.95 True fake: scaffold gap size wrong estimation (local) 80764470 80776080 201719 214042 NC_000014.9 scf119 99.88 True fake: scaffold gap size wrong estimation (local) 80775984 80801337 214701 240835 NC_000014.9 scf119 99.93 True fake: scaffold gap size wrong estimation (local) 80801940 80811776 242296 252948 NC_000014.9 scf119 99.24 True fake: scaffold gap size wrong estimation (local) 80811605 80812861 253602 254891 NC_000014.9 scf119 97.14 True fake: scaffold gap size wrong estimation (local) 80812774 80817059 255854 260138 NC_000014.9 scf119 99.91 True fake: scaffold gap size wrong estimation (local) 80816965 80825962 260850 272525 NC_000014.9 scf119 98.8 True CONTIG scf119 272525 correct 45311122 45320392 9270 1 NC_000014.9 scf120 99.96 True fake: scaffold gap size wrong estimation (local) 45302194 45311219 18953 9926 NC_000014.9 scf120 99.94 True fake: scaffold gap size wrong estimation (local) 45295702 45302250 26908 19647 NC_000014.9 scf120 99.95 True fake: not a misassembly (possible transposable element) 61048048 61053708 32569 26909 NC_000014.9 scf120 99.91 True fake: not a misassembly (possible transposable element) 45289117 45290817 34271 32570 NC_000014.9 scf120 99.94 True fake: not a misassembly (possible transposable element) 61045819 61047131 35584 34272 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 45287241 45288586 36930 35585 NC_000014.9 scf120 99.93 True fake: not a misassembly (possible transposable element) 61039515 61045244 42673 36931 NC_000014.9 scf120 99.67 True fake: not a misassembly (possible transposable element) 45282799 45283612 43487 42674 NC_000014.9 scf120 100.0 True relocation, inconsistency = -15756777 61030271 61039575 52793 43488 NC_000014.9 scf120 99.94 True fake: not a misassembly (possible transposable element) 45269949 45274125 56970 52794 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 61014719 61026819 69078 56971 NC_000014.9 scf120 99.83 True relocation, inconsistency = 15754604 45252770 45260114 76423 69079 NC_000014.9 scf120 99.99 True fake: scaffold gap size wrong estimation (local) 45245358 45252865 86322 77135 NC_000014.9 scf120 99.99 True fake: scaffold gap size wrong estimation (local) 45241275 45245457 91227 87045 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45238618 45240174 94716 93160 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45235492 45238714 98661 95441 NC_000014.9 scf120 99.94 True fake: scaffold gap size wrong estimation (local) 45232246 45235589 102622 99281 NC_000014.9 scf120 99.94 True fake: scaffold gap size wrong estimation (local) 45221294 45232300 115105 103320 NC_000014.9 scf120 99.59 True fake: scaffold gap size wrong estimation (local) 45217619 45220949 119505 116175 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45197795 45217709 140085 120169 NC_000014.9 scf120 99.98 True fake: scaffold gap size wrong estimation (local) 45194732 45197482 143931 141181 NC_000014.9 scf120 99.96 True fake: scaffold gap size wrong estimation (local) 45188123 45194826 151275 144825 NC_000014.9 scf120 96.23 True fake: scaffold gap size wrong estimation (local) 45184837 45188216 155295 151916 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45179795 45184549 161040 156286 NC_000014.9 scf120 99.98 True fake: scaffold gap size wrong estimation (local) 45171626 45179649 169911 161893 NC_000014.9 scf120 99.93 True fake: scaffold gap size wrong estimation (local) 45169174 45171720 173159 170613 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45165379 45169251 180050 176152 NC_000014.9 scf120 99.33 True fake: scaffold gap size wrong estimation (local) 45163358 45165478 182824 180704 NC_000014.9 scf120 99.95 True local misassembly 45162163 45163169 183831 182825 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45160761 45162257 186173 184677 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45156924 45160018 190732 187638 NC_000014.9 scf120 99.97 True fake: scaffold gap size wrong estimation (local) 45152176 45156779 197067 191644 NC_000014.9 scf120 97.09 True fake: scaffold gap size wrong estimation (local) 45147997 45151933 202006 198070 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45143691 45145844 209018 206865 NC_000014.9 scf120 99.95 True fake: scaffold gap size wrong estimation (local) 45142501 45143748 211315 210068 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 45131355 45142391 223263 212230 NC_000014.9 scf120 99.95 True relocation, inconsistency = -55156751 100281062 100288105 230306 223264 NC_000014.9 scf120 99.86 True fake: not a misassembly (possible transposable element) 101664091 101666818 233723 230996 NC_000014.9 scf120 99.93 True fake: not a misassembly (possible transposable element) 100272966 100278451 239209 233724 NC_000014.9 scf120 99.96 True relocation, inconsistency = -1387250 101659544 101660204 239881 239221 NC_000014.9 scf120 100.0 True indel: indel (<= 5bp) 101658342 101659543 241084 239883 NC_000014.9 scf120 100.0 True fake: scaffold gap size wrong estimation (local) 101651936 101658341 248197 241792 NC_000014.9 scf120 99.77 True indel: indel (<= 5bp) 101650262 101651935 249872 248199 NC_000014.9 scf120 99.76 True fake: scaffold gap size wrong estimation (local) 101648834 101650318 252174 250690 NC_000014.9 scf120 99.87 True fake: not a misassembly (possible transposable element) 100261246 100264051 254980 252175 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 101637445 101646672 264201 254981 NC_000014.9 scf120 99.85 True relocation, inconsistency = 1382704 100254029 100254740 264913 264202 NC_000014.9 scf120 99.86 True local misassembly 100252796 100253896 266014 264914 NC_000014.9 scf120 100.0 True relocation, inconsistency = -1383555 101627566 101636350 274799 266015 NC_000014.9 scf120 99.9 True fake: not a misassembly (possible transposable element) 100244351 100246038 276534 274800 NC_000014.9 scf120 97.23 True fake: not a misassembly (possible transposable element) 101617847 101627355 286039 276535 NC_000014.9 scf120 99.81 True fake: not a misassembly (possible transposable element) 100235860 100237178 287762 286151 NC_000014.9 scf120 99.1 True fake: not a misassembly (possible transposable element) 101607939 101616798 296652 287782 NC_000014.9 scf120 99.76 True fake: not a misassembly (possible transposable element) 100222662 100227834 303594 298422 NC_000014.9 scf120 99.94 True fake: not a misassembly (possible transposable element) 101592399 101601797 312992 303595 NC_000014.9 scf120 99.97 True relocation, inconsistency = 1376669 100210369 100215728 318353 312994 NC_000014.9 scf120 100.0 True relocation, inconsistency = 47904482 52300190 52305886 324049 318354 NC_000014.9 scf120 99.89 True fake: scaffold gap size wrong estimation (local) 52299203 52300290 325860 324773 NC_000014.9 scf120 100.0 True local misassembly 52293587 52297378 331350 327559 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 101576162 101577185 332374 331351 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 52290369 52293292 335298 332375 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 101572634 101574007 336672 335299 NC_000014.9 scf120 100.0 True fake: not a misassembly (possible transposable element) 52278492 52289819 347997 336673 NC_000014.9 scf120 99.95 True fake: scaffold gap size wrong estimation (local) 52262119 52278328 365095 348882 NC_000014.9 scf120 99.88 True fake: scaffold gap size wrong estimation (local) 52258060 52261525 369868 366403 NC_000014.9 scf120 99.86 True CONTIG scf120 369868 misassembled 20131103 20134744 1 3642 NC_000014.9 scf121 99.97 True fake: scaffold gap size wrong estimation (local) 20134925 20142244 4519 11838 NC_000014.9 scf121 99.96 True fake: scaffold gap size wrong estimation (local) 20142146 20146603 12515 16829 NC_000014.9 scf121 96.79 True fake: scaffold gap size wrong estimation (local) 20146707 20151709 17672 22674 NC_000014.9 scf121 100.0 True fake: scaffold gap size wrong estimation (local) 20153604 20158322 25068 29786 NC_000014.9 scf121 99.89 True fake: scaffold gap size wrong estimation (local) 20158512 20160722 30764 32974 NC_000014.9 scf121 100.0 True fake: scaffold gap size wrong estimation (local) 20160624 20166074 33671 39109 NC_000014.9 scf121 99.74 True fake: scaffold gap size wrong estimation (local) 20165983 20169440 39739 43195 NC_000014.9 scf121 99.97 True fake: scaffold gap size wrong estimation (local) 20169621 20173631 44288 49143 NC_000014.9 scf121 97.43 True fake: scaffold gap size wrong estimation (local) 20173534 20174187 49806 50459 NC_000014.9 scf121 99.85 True fake: scaffold gap size wrong estimation (local) 20174717 20177155 52153 54591 NC_000014.9 scf121 99.96 True fake: scaffold gap size wrong estimation (local) 20177340 20179072 55517 57249 NC_000014.9 scf121 99.77 True fake: scaffold gap size wrong estimation (local) 20178980 20201215 58000 81055 NC_000014.9 scf121 99.79 True fake: scaffold gap size wrong estimation (local) 20201404 20203324 82036 84302 NC_000014.9 scf121 95.08 True fake: scaffold gap size wrong estimation (local) 20203229 20208901 85230 90935 NC_000014.9 scf121 99.33 True fake: scaffold gap size wrong estimation (local) 20209064 20211184 91913 94033 NC_000014.9 scf121 99.91 True fake: scaffold gap size wrong estimation (local) 20213351 20216431 96777 99854 NC_000014.9 scf121 99.81 True fake: scaffold gap size wrong estimation (local) 20216334 20217571 100804 102076 NC_000014.9 scf121 96.78 True local misassembly 20218094 20219482 102131 103519 NC_000014.9 scf121 99.86 True fake: scaffold gap size wrong estimation (local) 20219630 20220450 104752 105572 NC_000014.9 scf121 99.76 True local misassembly 20220687 20221466 105573 106352 NC_000014.9 scf121 100.0 True fake: scaffold gap size wrong estimation (local) 20221907 20226236 108246 112579 NC_000014.9 scf121 98.58 True fake: scaffold gap size wrong estimation (local) 20226161 20230905 113268 118012 NC_000014.9 scf121 99.77 True CONTIG scf121 118012 correct 31811943 31813011 2706 3774 NC_000014.9 scf122 99.81 True local misassembly 31813576 31814179 3775 4378 NC_000014.9 scf122 99.67 True fake: scaffold gap size wrong estimation (local) 31815499 31816067 6755 7323 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 31816337 31831523 7461 24611 NC_000014.9 scf122 99.37 True fake: scaffold gap size wrong estimation (local) 31831424 31834199 25239 28014 NC_000014.9 scf122 99.93 True fake: scaffold gap size wrong estimation (local) 31834338 31841921 28973 36656 NC_000014.9 scf122 99.95 True fake: scaffold gap size wrong estimation (local) 31842062 31846966 37799 42703 NC_000014.9 scf122 99.88 True fake: scaffold gap size wrong estimation (local) 31846877 31849425 43439 45987 NC_000014.9 scf122 99.92 True fake: scaffold gap size wrong estimation (local) 31849333 31851334 46784 48785 NC_000014.9 scf122 99.9 True fake: scaffold gap size wrong estimation (local) 31851238 31853144 49582 51493 NC_000014.9 scf122 99.74 True fake: scaffold gap size wrong estimation (local) 31853053 31860170 52193 60008 NC_000014.9 scf122 98.14 True fake: scaffold gap size wrong estimation (local) 31860855 31862757 61503 63405 NC_000014.9 scf122 99.68 True fake: scaffold gap size wrong estimation (local) 31862574 31867026 63757 69240 NC_000014.9 scf122 98.62 True fake: scaffold gap size wrong estimation (local) 31866931 31868952 70052 72044 NC_000014.9 scf122 98.34 True fake: scaffold gap size wrong estimation (local) 31869407 31876091 73276 79960 NC_000014.9 scf122 99.93 True fake: scaffold gap size wrong estimation (local) 31875994 31879489 80583 84078 NC_000014.9 scf122 99.97 True fake: scaffold gap size wrong estimation (local) 31879401 31884369 84746 89714 NC_000014.9 scf122 99.98 True fake: scaffold gap size wrong estimation (local) 31884275 31888171 90375 94271 NC_000014.9 scf122 99.92 True fake: scaffold gap size wrong estimation (local) 31888100 31904284 95019 111952 NC_000014.9 scf122 99.73 True fake: scaffold gap size wrong estimation (local) 31904185 31908027 112595 116437 NC_000014.9 scf122 99.95 True fake: scaffold gap size wrong estimation (local) 31908137 31908668 117245 117776 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 31908574 31914960 118566 124815 NC_000014.9 scf122 95.74 True fake: scaffold gap size wrong estimation (local) 31914862 31918558 125583 129295 NC_000014.9 scf122 99.52 True fake: scaffold gap size wrong estimation (local) 31918770 31920750 130277 132254 NC_000014.9 scf122 99.44 True fake: scaffold gap size wrong estimation (local) 31920655 31923817 132944 136106 NC_000014.9 scf122 99.81 True fake: scaffold gap size wrong estimation (local) 31923909 31930157 136956 143205 NC_000014.9 scf122 99.78 True fake: scaffold gap size wrong estimation (local) 31930058 31931229 143939 145110 NC_000014.9 scf122 99.91 True fake: scaffold gap size wrong estimation (local) 31931657 31933325 145453 147108 NC_000014.9 scf122 97.27 True fake: scaffold gap size wrong estimation (local) 31933242 31935003 147633 149412 NC_000014.9 scf122 98.76 True fake: scaffold gap size wrong estimation (local) 31934904 31936453 150453 152002 NC_000014.9 scf122 99.87 True local misassembly 31937778 31938373 152599 153194 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 31938374 31944372 155596 161594 NC_000014.9 scf122 99.88 True fake: scaffold gap size wrong estimation (local) 31944373 31946006 162392 164025 NC_000014.9 scf122 96.57 True fake: scaffold gap size wrong estimation (local) 31945920 31954579 164756 173390 NC_000014.9 scf122 99.38 True fake: scaffold gap size wrong estimation (local) 31955026 31958410 174654 179002 NC_000014.9 scf122 99.38 True fake: scaffold gap size wrong estimation (local) 31958881 31959937 180309 181365 NC_000014.9 scf122 100.0 True local misassembly 31960074 31961017 181366 182309 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 31961230 31961787 183053 183610 NC_000014.9 scf122 99.82 True fake: scaffold gap size wrong estimation (local) 31961694 31972415 184582 195141 NC_000014.9 scf122 98.37 True fake: scaffold gap size wrong estimation (local) 31972326 31979921 195956 204338 NC_000014.9 scf122 99.59 True fake: scaffold gap size wrong estimation (local) 31980940 31983185 205278 207522 NC_000014.9 scf122 99.78 True fake: scaffold gap size wrong estimation (local) 31983086 31996343 208707 221945 NC_000014.9 scf122 99.31 True fake: scaffold gap size wrong estimation (local) 31996261 31997277 222769 223785 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 31997488 32006290 224842 234479 NC_000014.9 scf122 99.01 True fake: scaffold gap size wrong estimation (local) 32006193 32008807 235189 237803 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 32008709 32011765 238505 241561 NC_000014.9 scf122 98.99 True fake: scaffold gap size wrong estimation (local) 32011672 32013856 242264 244448 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 32013757 32017285 245145 248673 NC_000014.9 scf122 99.91 True fake: scaffold gap size wrong estimation (local) 32017511 32026946 249664 259883 NC_000014.9 scf122 99.76 True fake: scaffold gap size wrong estimation (local) 32027073 32032544 260821 266291 NC_000014.9 scf122 99.85 True fake: scaffold gap size wrong estimation (local) 32032749 32052334 267230 286804 NC_000014.9 scf122 99.85 True fake: scaffold gap size wrong estimation (local) 32052238 32054616 287521 289899 NC_000014.9 scf122 99.79 True fake: scaffold gap size wrong estimation (local) 32054524 32055926 290820 292222 NC_000014.9 scf122 99.93 True fake: scaffold gap size wrong estimation (local) 32056471 32061401 293481 298411 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 32061307 32063828 299086 301607 NC_000014.9 scf122 99.96 True fake: scaffold gap size wrong estimation (local) 32063736 32064416 302596 303276 NC_000014.9 scf122 100.0 True fake: scaffold gap size wrong estimation (local) 32064540 32071057 304287 310808 NC_000014.9 scf122 99.49 True fake: scaffold gap size wrong estimation (local) 32070978 32076941 311491 317454 NC_000014.9 scf122 99.98 True fake: scaffold gap size wrong estimation (local) 32077148 32082819 318448 324958 NC_000014.9 scf122 99.98 True fake: scaffold gap size wrong estimation (local) 32082731 32095429 325721 338419 NC_000014.9 scf122 99.98 True fake: scaffold gap size wrong estimation (local) 32095572 32106405 339319 350929 NC_000014.9 scf122 99.99 True fake: scaffold gap size wrong estimation (local) 32106314 32114021 351591 360100 NC_000014.9 scf122 99.82 True fake: scaffold gap size wrong estimation (local) 32114208 32115645 361215 362652 NC_000014.9 scf122 99.86 True fake: scaffold gap size wrong estimation (local) 32116455 32127014 364202 375503 NC_000014.9 scf122 99.76 True fake: scaffold gap size wrong estimation (local) 32128290 32130218 377509 379437 NC_000014.9 scf122 99.95 True CONTIG scf122 381775 correct 24049774 24050394 1 621 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24051154 24064001 2082 14929 NC_000014.9 scf123 99.95 True fake: scaffold gap size wrong estimation (local) 24064100 24088898 15824 42173 NC_000014.9 scf123 99.94 True fake: scaffold gap size wrong estimation (local) 24089114 24090270 43264 44420 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24091214 24097540 46144 52647 NC_000014.9 scf123 99.17 True fake: scaffold gap size wrong estimation (local) 24097752 24105434 53805 61486 NC_000014.9 scf123 99.96 True fake: scaffold gap size wrong estimation (local) 24105341 24108549 62224 65330 NC_000014.9 scf123 96.82 True fake: scaffold gap size wrong estimation (local) 24113294 24125856 65743 79909 NC_000014.9 scf123 99.87 True fake: scaffold gap size wrong estimation (local) 24125765 24128652 80607 83441 NC_000014.9 scf123 98.16 True fake: scaffold gap size wrong estimation (local) 24128811 24133597 84397 89182 NC_000014.9 scf123 99.98 True fake: scaffold gap size wrong estimation (local) 24133776 24134902 91338 92464 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24135109 24142582 93676 101908 NC_000014.9 scf123 99.64 True fake: scaffold gap size wrong estimation (local) 24143086 24149228 103219 110179 NC_000014.9 scf123 99.63 True fake: scaffold gap size wrong estimation (local) 24149157 24153011 110893 114747 NC_000014.9 scf123 99.97 True fake: scaffold gap size wrong estimation (local) 24152962 24153725 115617 116380 NC_000014.9 scf123 100.0 True local misassembly 24153951 24156779 116381 119209 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24156975 24158949 120277 122251 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24159361 24162557 123426 126620 NC_000014.9 scf123 99.94 True fake: scaffold gap size wrong estimation (local) 24162800 24168692 127631 133523 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24168949 24170714 134595 136356 NC_000014.9 scf123 99.77 True fake: scaffold gap size wrong estimation (local) 24171458 24173999 137940 140481 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24173922 24175954 141262 143294 NC_000014.9 scf123 99.95 True fake: scaffold gap size wrong estimation (local) 24176356 24190875 144518 159037 NC_000014.9 scf123 99.99 True fake: scaffold gap size wrong estimation (local) 24191008 24193492 159983 162451 NC_000014.9 scf123 99.36 True fake: scaffold gap size wrong estimation (local) 24193778 24198019 163528 167785 NC_000014.9 scf123 99.58 True fake: scaffold gap size wrong estimation (local) 24198459 24200404 169020 172134 NC_000014.9 scf123 95.53 True fake: scaffold gap size wrong estimation (local) 24201020 24202064 172453 173497 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24204037 24205315 176085 177363 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24205502 24208810 180070 183378 NC_000014.9 scf123 100.0 True fake: scaffold gap size wrong estimation (local) 24209151 24212534 184452 188868 NC_000014.9 scf123 97.63 True fake: scaffold gap size wrong estimation (local) 24212739 24215218 190118 192597 NC_000014.9 scf123 99.8 True fake: scaffold gap size wrong estimation (local) 24215133 24218923 193369 198112 NC_000014.9 scf123 98.49 True fake: scaffold gap size wrong estimation (local) 24220041 24224045 200141 205821 NC_000014.9 scf123 99.55 True fake: scaffold gap size wrong estimation (local) 24224175 24228368 206785 210979 NC_000014.9 scf123 99.83 True fake: scaffold gap size wrong estimation (local) 24230752 24244212 215719 230702 NC_000014.9 scf123 98.69 True fake: scaffold gap size wrong estimation (local) 24244877 24245475 232359 232957 NC_000014.9 scf123 99.83 True fake: scaffold gap size wrong estimation (local) 24245476 24246255 233205 233984 NC_000014.9 scf123 99.87 True fake: scaffold gap size wrong estimation (local) 24247389 24253769 236142 242508 NC_000014.9 scf123 99.42 True fake: scaffold gap size wrong estimation (local) 24253672 24286753 243769 279250 NC_000014.9 scf123 99.13 True fake: scaffold gap size wrong estimation (local) 24286943 24288434 279468 280959 NC_000014.9 scf123 99.8 True fake: scaffold gap size wrong estimation (local) 24289237 24295034 282552 288355 NC_000014.9 scf123 99.71 True fake: scaffold gap size wrong estimation (local) 24294952 24298769 289024 292841 NC_000014.9 scf123 99.87 True fake: scaffold gap size wrong estimation (local) 24298676 24303402 293534 298266 NC_000014.9 scf123 99.79 True fake: scaffold gap size wrong estimation (local) 24303365 24326610 299014 323057 NC_000014.9 scf123 99.83 True fake: scaffold gap size wrong estimation (local) 24327025 24328565 324339 325879 NC_000014.9 scf123 99.81 True fake: scaffold gap size wrong estimation (local) 24328466 24356531 326985 357242 NC_000014.9 scf123 98.39 True fake: scaffold gap size wrong estimation (local) 24358883 24360430 360577 362124 NC_000014.9 scf123 99.94 True fake: scaffold gap size wrong estimation (local) 24360348 24364122 363289 367077 NC_000014.9 scf123 99.58 True fake: scaffold gap size wrong estimation (local) 24364046 24371901 367801 375456 NC_000014.9 scf123 97.38 True fake: scaffold gap size wrong estimation (local) 24371805 24386602 376142 390934 NC_000014.9 scf123 99.82 True fake: scaffold gap size wrong estimation (local) 24386512 24390133 391589 395211 NC_000014.9 scf123 99.86 True fake: scaffold gap size wrong estimation (local) 24390046 24419885 395910 427677 NC_000014.9 scf123 98.33 True fake: scaffold gap size wrong estimation (local) 24419803 24421678 428434 430301 NC_000014.9 scf123 99.52 True fake: scaffold gap size wrong estimation (local) 24421886 24430931 431313 440607 NC_000014.9 scf123 98.88 True fake: scaffold gap size wrong estimation (local) 24430833 24434139 441462 444768 NC_000014.9 scf123 99.88 True fake: scaffold gap size wrong estimation (local) 24434445 24443925 445850 455335 NC_000014.9 scf123 99.64 True fake: scaffold gap size wrong estimation (local) 24444147 24448119 456246 460252 NC_000014.9 scf123 98.5 True CONTIG scf123 460252 correct 36679097 36694011 15698 1 NC_000014.9 scf124 99.96 True fake: scaffold gap size wrong estimation (local) 36673066 36679179 22462 16324 NC_000014.9 scf124 99.56 True fake: scaffold gap size wrong estimation (local) 36665726 36672816 31357 23435 NC_000014.9 scf124 98.99 True fake: scaffold gap size wrong estimation (local) 36659624 36665805 38216 32036 NC_000014.9 scf124 99.89 True fake: scaffold gap size wrong estimation (local) 36649586 36659721 48957 38823 NC_000014.9 scf124 99.93 True fake: scaffold gap size wrong estimation (local) 36644339 36649683 54943 49599 NC_000014.9 scf124 99.96 True fake: scaffold gap size wrong estimation (local) 36637671 36644414 62311 55763 NC_000014.9 scf124 96.95 True fake: scaffold gap size wrong estimation (local) 36633356 36637034 67490 63785 NC_000014.9 scf124 99.08 True fake: scaffold gap size wrong estimation (local) 36621690 36633172 80701 68450 NC_000014.9 scf124 99.57 True fake: scaffold gap size wrong estimation (local) 36609438 36621762 93644 81339 NC_000014.9 scf124 99.78 True fake: scaffold gap size wrong estimation (local) 36608945 36609625 94953 94252 NC_000014.9 scf124 96.44 True fake: scaffold gap size wrong estimation (local) 36604170 36608189 100864 96845 NC_000014.9 scf124 99.95 True fake: scaffold gap size wrong estimation (local) 36599988 36603325 105721 102384 NC_000014.9 scf124 99.97 True fake: scaffold gap size wrong estimation (local) 36597183 36599779 109279 106683 NC_000014.9 scf124 99.96 True fake: scaffold gap size wrong estimation (local) 36578594 36597233 129413 109994 NC_000014.9 scf124 99.75 True fake: scaffold gap size wrong estimation (local) 36574849 36578692 133965 130122 NC_000014.9 scf124 99.87 True fake: scaffold gap size wrong estimation (local) 36572731 36574937 136817 134611 NC_000014.9 scf124 99.73 True fake: scaffold gap size wrong estimation (local) 36570390 36572601 139935 137724 NC_000014.9 scf124 99.64 True fake: scaffold gap size wrong estimation (local) 36563051 36569757 148030 141326 NC_000014.9 scf124 99.82 True fake: scaffold gap size wrong estimation (local) 36544220 36563148 169960 148654 NC_000014.9 scf124 98.78 True fake: scaffold gap size wrong estimation (local) 36540116 36544313 174902 170783 NC_000014.9 scf124 98.0 True fake: scaffold gap size wrong estimation (local) 36532874 36540209 183714 175611 NC_000014.9 scf124 99.89 True fake: scaffold gap size wrong estimation (local) 36529696 36532973 187647 184370 NC_000014.9 scf124 99.85 True fake: scaffold gap size wrong estimation (local) 36520450 36529792 197649 188307 NC_000014.9 scf124 99.95 True fake: scaffold gap size wrong estimation (local) 36490617 36520356 230495 198643 NC_000014.9 scf124 99.3 True fake: scaffold gap size wrong estimation (local) 36487174 36490711 234689 231152 NC_000014.9 scf124 100.0 True fake: scaffold gap size wrong estimation (local) 36476375 36487273 247210 236261 NC_000014.9 scf124 99.45 True fake: scaffold gap size wrong estimation (local) 36467877 36476178 256479 248177 NC_000014.9 scf124 99.88 True fake: scaffold gap size wrong estimation (local) 36448536 36467968 276583 257178 NC_000014.9 scf124 99.78 True fake: scaffold gap size wrong estimation (local) 36436508 36448604 290881 277314 NC_000014.9 scf124 99.6 True fake: scaffold gap size wrong estimation (local) 36434802 36436373 293368 291797 NC_000014.9 scf124 99.75 True fake: scaffold gap size wrong estimation (local) 36432534 36434871 296604 294267 NC_000014.9 scf124 99.91 True fake: scaffold gap size wrong estimation (local) 36421767 36431694 308085 298157 NC_000014.9 scf124 99.84 True fake: scaffold gap size wrong estimation (local) 36419556 36421798 311105 308863 NC_000014.9 scf124 99.87 True fake: scaffold gap size wrong estimation (local) 36417522 36419283 313955 312194 NC_000014.9 scf124 99.94 True fake: scaffold gap size wrong estimation (local) 36415946 36416467 316417 315896 NC_000014.9 scf124 99.81 True CONTIG scf124 316417 correct 35949653 35951445 1 1793 NC_000014.9 scf125 99.89 True fake: scaffold gap size wrong estimation (local) 35951559 35973607 2755 27156 NC_000014.9 scf125 99.96 True fake: scaffold gap size wrong estimation (local) 35974569 35976229 28941 30601 NC_000014.9 scf125 99.94 True fake: scaffold gap size wrong estimation (local) 35978657 35980581 33503 35427 NC_000014.9 scf125 100.0 True fake: scaffold gap size wrong estimation (local) 35982501 35994340 37870 51541 NC_000014.9 scf125 99.86 True fake: scaffold gap size wrong estimation (local) 35994244 35995140 52302 53198 NC_000014.9 scf125 99.89 True local misassembly 35995336 36011127 53199 69345 NC_000014.9 scf125 99.36 True fake: scaffold gap size wrong estimation (local) 36011034 36025961 70018 84945 NC_000014.9 scf125 99.99 True fake: scaffold gap size wrong estimation (local) 36026110 36033025 85879 93601 NC_000014.9 scf125 98.69 True fake: scaffold gap size wrong estimation (local) 36032927 36040057 94240 101370 NC_000014.9 scf125 100.0 True fake: scaffold gap size wrong estimation (local) 36040015 36045923 102182 109325 NC_000014.9 scf125 98.89 True fake: scaffold gap size wrong estimation (local) 36045855 36047738 110116 111999 NC_000014.9 scf125 100.0 True fake: scaffold gap size wrong estimation (local) 36047659 36049399 112884 114624 NC_000014.9 scf125 100.0 True fake: scaffold gap size wrong estimation (local) 36049305 36072310 115401 139146 NC_000014.9 scf125 99.87 True fake: scaffold gap size wrong estimation (local) 36072257 36078960 139827 146534 NC_000014.9 scf125 99.88 True fake: scaffold gap size wrong estimation (local) 36078862 36082774 147239 152033 NC_000014.9 scf125 99.53 True fake: scaffold gap size wrong estimation (local) 36082695 36090226 152700 160967 NC_000014.9 scf125 99.69 True fake: scaffold gap size wrong estimation (local) 36090135 36101093 161719 174304 NC_000014.9 scf125 99.04 True fake: scaffold gap size wrong estimation (local) 36101007 36104584 174985 178563 NC_000014.9 scf125 99.53 True fake: scaffold gap size wrong estimation (local) 36104488 36109126 179302 183938 NC_000014.9 scf125 99.76 True fake: scaffold gap size wrong estimation (local) 36109044 36119418 184568 194942 NC_000014.9 scf125 99.61 True CONTIG scf125 194942 correct 28415624 28416669 1 1046 NC_000014.9 scf126 99.81 True fake: scaffold gap size wrong estimation (local) 28416573 28417090 2309 2826 NC_000014.9 scf126 100.0 True local misassembly 28417333 28418796 2827 4290 NC_000014.9 scf126 99.86 True fake: scaffold gap size wrong estimation (local) 28418697 28428158 5480 15685 NC_000014.9 scf126 99.63 True fake: scaffold gap size wrong estimation (local) 28428109 28432247 16488 20624 NC_000014.9 scf126 99.95 True fake: scaffold gap size wrong estimation (local) 28432393 28435191 21627 24425 NC_000014.9 scf126 99.93 True fake: scaffold gap size wrong estimation (local) 28435408 28458109 25434 49245 NC_000014.9 scf126 99.53 True fake: scaffold gap size wrong estimation (local) 28458010 28461566 49902 53502 NC_000014.9 scf126 98.53 True fake: scaffold gap size wrong estimation (local) 28461403 28462329 54322 55287 NC_000014.9 scf126 95.86 True fake: scaffold gap size wrong estimation (local) 28462251 28487094 56033 82348 NC_000014.9 scf126 99.33 True fake: scaffold gap size wrong estimation (local) 28487197 28496150 83199 92152 NC_000014.9 scf126 99.97 True fake: scaffold gap size wrong estimation (local) 28496052 28507307 93460 104734 NC_000014.9 scf126 99.77 True fake: scaffold gap size wrong estimation (local) 28507217 28508671 105458 106945 NC_000014.9 scf126 97.65 True indel: indel (> 5bp) 28508798 28509364 107032 107598 NC_000014.9 scf126 100.0 True fake: scaffold gap size wrong estimation (local) 28510324 28527484 109310 128558 NC_000014.9 scf126 99.12 True fake: scaffold gap size wrong estimation (local) 28527402 28529487 129230 131315 NC_000014.9 scf126 99.86 True fake: scaffold gap size wrong estimation (local) 28529416 28532700 132226 135566 NC_000014.9 scf126 98.2 True fake: scaffold gap size wrong estimation (local) 28532534 28534331 136340 138172 NC_000014.9 scf126 97.82 True fake: scaffold gap size wrong estimation (local) 28534232 28538788 138932 143516 NC_000014.9 scf126 99.17 True fake: scaffold gap size wrong estimation (local) 28538721 28539964 144243 145486 NC_000014.9 scf126 99.76 True local misassembly 28540160 28542688 145487 148015 NC_000014.9 scf126 99.64 True fake: scaffold gap size wrong estimation (local) 28542592 28544500 148785 150693 NC_000014.9 scf126 99.79 True fake: scaffold gap size wrong estimation (local) 28546234 28548044 153057 154867 NC_000014.9 scf126 99.94 True fake: scaffold gap size wrong estimation (local) 28547956 28552772 155305 161123 NC_000014.9 scf126 99.94 True fake: scaffold gap size wrong estimation (local) 28552682 28556205 161731 165254 NC_000014.9 scf126 99.91 True fake: scaffold gap size wrong estimation (local) 28556116 28586849 165966 199018 NC_000014.9 scf126 99.76 True fake: scaffold gap size wrong estimation (local) 28587188 28601990 199694 215499 NC_000014.9 scf126 99.68 True fake: scaffold gap size wrong estimation (local) 28601924 28611778 216163 226017 NC_000014.9 scf126 99.89 True fake: scaffold gap size wrong estimation (local) 28611697 28621743 226699 237531 NC_000014.9 scf126 99.64 True fake: scaffold gap size wrong estimation (local) 28621646 28636282 238176 254279 NC_000014.9 scf126 98.25 True fake: scaffold gap size wrong estimation (local) 28637246 28638196 256720 257705 NC_000014.9 scf126 96.45 True CONTIG scf126 257724 correct 79936979 79958844 2 24104 NC_000014.9 scf127 99.12 True fake: scaffold gap size wrong estimation (local) 79958753 80002638 24793 71463 NC_000014.9 scf127 99.49 True fake: scaffold gap size wrong estimation (local) 80002553 80010530 72142 80119 NC_000014.9 scf127 99.9 True fake: scaffold gap size wrong estimation (local) 80011499 80018269 81853 88623 NC_000014.9 scf127 99.91 True fake: scaffold gap size wrong estimation (local) 80018440 80026023 89597 97136 NC_000014.9 scf127 99.33 True fake: scaffold gap size wrong estimation (local) 80026134 80028588 98020 100474 NC_000014.9 scf127 99.92 True CONTIG scf127 100474 correct 23760975 23762025 40 1090 NC_000014.9 scf128 99.24 True fake: scaffold gap size wrong estimation (local) 23762200 23778916 1263 18840 NC_000014.9 scf128 99.08 True fake: scaffold gap size wrong estimation (local) 23779041 23792514 19755 34196 NC_000014.9 scf128 99.21 True fake: scaffold gap size wrong estimation (local) 23792627 23796468 35220 39065 NC_000014.9 scf128 99.87 True fake: scaffold gap size wrong estimation (local) 23796379 23810659 39724 54001 NC_000014.9 scf128 99.94 True fake: scaffold gap size wrong estimation (local) 23810823 23812048 55016 56241 NC_000014.9 scf128 100.0 True local misassembly 23812545 23813157 56553 57165 NC_000014.9 scf128 99.84 True fake: scaffold gap size wrong estimation (local) 23813577 23819450 58485 64358 NC_000014.9 scf128 99.93 True fake: scaffold gap size wrong estimation (local) 23819865 23832858 65512 79214 NC_000014.9 scf128 99.72 True fake: scaffold gap size wrong estimation (local) 23832821 23834849 80031 82059 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23835081 23855806 83876 105452 NC_000014.9 scf128 99.5 True fake: scaffold gap size wrong estimation (local) 23855957 23856850 106565 107458 NC_000014.9 scf128 99.89 True local misassembly 23857368 23858096 107750 108478 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23858034 23880792 109559 133856 NC_000014.9 scf128 98.65 True fake: scaffold gap size wrong estimation (local) 23881029 23883016 135050 137037 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23883514 23886713 138246 141445 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23886721 23887397 142858 143534 NC_000014.9 scf128 100.0 True local misassembly 23887647 23890822 143606 146781 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23891026 23892310 147794 149111 NC_000014.9 scf128 98.54 True fake: scaffold gap size wrong estimation (local) 23892938 23898825 150657 156484 NC_000014.9 scf128 98.82 True fake: scaffold gap size wrong estimation (local) 23899290 23901293 158209 160212 NC_000014.9 scf128 99.9 True fake: scaffold gap size wrong estimation (local) 23901199 23903096 161159 163056 NC_000014.9 scf128 99.84 True local misassembly 23903271 23904169 163121 164019 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23904517 23908557 165104 169144 NC_000014.9 scf128 100.0 True fake: scaffold gap size wrong estimation (local) 23908464 23918798 169852 180884 NC_000014.9 scf128 99.85 True CONTIG scf128 180890 correct 48360578 48366360 5783 1 NC_000014.9 scf129 99.97 True fake: scaffold gap size wrong estimation (local) 48357911 48360671 9186 6428 NC_000014.9 scf129 99.86 True fake: scaffold gap size wrong estimation (local) 48355173 48357707 12695 10161 NC_000014.9 scf129 99.84 True fake: scaffold gap size wrong estimation (local) 48339424 48354940 29233 13717 NC_000014.9 scf129 99.98 True fake: scaffold gap size wrong estimation (local) 48334636 48338622 34768 30787 NC_000014.9 scf129 99.85 True fake: scaffold gap size wrong estimation (local) 48332505 48334733 37752 35516 NC_000014.9 scf129 99.64 True fake: scaffold gap size wrong estimation (local) 48327884 48332315 44045 38809 NC_000014.9 scf129 98.86 True fake: scaffold gap size wrong estimation (local) 48318867 48327977 54342 45435 NC_000014.9 scf129 97.0 True fake: scaffold gap size wrong estimation (local) 48315390 48318956 58770 55195 NC_000014.9 scf129 99.69 True fake: scaffold gap size wrong estimation (local) 48294893 48314098 79958 60753 NC_000014.9 scf129 99.97 True fake: scaffold gap size wrong estimation (local) 48286233 48294758 89399 80874 NC_000014.9 scf129 99.98 True fake: scaffold gap size wrong estimation (local) 48285302 48286290 91145 90155 NC_000014.9 scf129 99.6 True fake: scaffold gap size wrong estimation (local) 48284258 48284837 92077 91498 NC_000014.9 scf129 99.48 True CONTIG scf129 92077 correct 42207535 42215708 1 8172 NC_000014.9 scf130 99.89 True fake: scaffold gap size wrong estimation (local) 42216007 42235127 9141 28260 NC_000014.9 scf130 99.86 True fake: scaffold gap size wrong estimation (local) 42235224 42253137 29090 46998 NC_000014.9 scf130 99.73 True fake: scaffold gap size wrong estimation (local) 42253655 42255373 48267 49985 NC_000014.9 scf130 99.88 True CONTIG scf130 52861 correct 96696017 96706695 10673 1 NC_000014.9 scf131 99.85 True fake: scaffold gap size wrong estimation (local) 96692417 96696094 15052 11375 NC_000014.9 scf131 99.92 True fake: scaffold gap size wrong estimation (local) 96676134 96692508 32080 15706 NC_000014.9 scf131 99.87 True fake: scaffold gap size wrong estimation (local) 96672859 96676232 36084 32711 NC_000014.9 scf131 99.94 True fake: scaffold gap size wrong estimation (local) 96653258 96672461 57094 37166 NC_000014.9 scf131 98.0 True fake: scaffold gap size wrong estimation (local) 96635683 96653345 76769 58328 NC_000014.9 scf131 99.6 True fake: scaffold gap size wrong estimation (local) 96630803 96635155 82450 78076 NC_000014.9 scf131 99.36 True fake: scaffold gap size wrong estimation (local) 96628559 96630709 85744 83594 NC_000014.9 scf131 99.86 True fake: scaffold gap size wrong estimation (local) 96620549 96628655 94392 86480 NC_000014.9 scf131 97.53 True fake: scaffold gap size wrong estimation (local) 96614225 96620614 101668 95283 NC_000014.9 scf131 99.86 True fake: scaffold gap size wrong estimation (local) 96612153 96614324 104575 102410 NC_000014.9 scf131 99.68 True fake: scaffold gap size wrong estimation (local) 96597102 96612011 120449 105543 NC_000014.9 scf131 99.92 True fake: scaffold gap size wrong estimation (local) 96594295 96597196 124013 121199 NC_000014.9 scf131 96.12 True fake: scaffold gap size wrong estimation (local) 96591363 96594184 127739 124918 NC_000014.9 scf131 99.86 True fake: scaffold gap size wrong estimation (local) 96570349 96591462 150335 128415 NC_000014.9 scf131 99.44 True fake: scaffold gap size wrong estimation (local) 96566587 96570412 154919 151094 NC_000014.9 scf131 99.95 True fake: scaffold gap size wrong estimation (local) 96533749 96566680 190815 155625 NC_000014.9 scf131 99.67 True fake: scaffold gap size wrong estimation (local) 96531102 96533566 194222 191818 NC_000014.9 scf131 97.57 True fake: scaffold gap size wrong estimation (local) 96523913 96531192 203811 196494 NC_000014.9 scf131 99.39 True fake: scaffold gap size wrong estimation (local) 96522121 96523994 206417 204544 NC_000014.9 scf131 100.0 True local misassembly 96520513 96521808 207743 206448 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96518928 96520602 210361 208687 NC_000014.9 scf131 99.94 True fake: scaffold gap size wrong estimation (local) 96517700 96518479 211860 211081 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96507479 96517760 223038 212741 NC_000014.9 scf131 99.81 True fake: scaffold gap size wrong estimation (local) 96506071 96507305 225321 224087 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96498432 96506155 234986 226330 NC_000014.9 scf131 99.03 True fake: scaffold gap size wrong estimation (local) 96496671 96498395 237658 235934 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96495028 96496089 240615 239528 NC_000014.9 scf131 97.61 True local misassembly 96493120 96494700 242256 240676 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96490884 96492994 245350 243240 NC_000014.9 scf131 99.95 True fake: scaffold gap size wrong estimation (local) 96487495 96490354 249544 246686 NC_000014.9 scf131 99.97 True fake: scaffold gap size wrong estimation (local) 96485988 96486652 251015 250351 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96479271 96485851 258793 252213 NC_000014.9 scf131 99.91 True fake: scaffold gap size wrong estimation (local) 96473212 96479031 266433 259826 NC_000014.9 scf131 99.35 True fake: scaffold gap size wrong estimation (local) 96471767 96472923 268766 267610 NC_000014.9 scf131 99.91 True local misassembly 96469887 96471333 270471 269025 NC_000014.9 scf131 99.93 True fake: scaffold gap size wrong estimation (local) 96468837 96469972 272426 271291 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96465285 96467607 276843 274560 NC_000014.9 scf131 97.09 True fake: scaffold gap size wrong estimation (local) 96463723 96464624 279212 278311 NC_000014.9 scf131 99.89 True fake: scaffold gap size wrong estimation (local) 96463010 96463517 280731 280224 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96457269 96462927 288220 281767 NC_000014.9 scf131 99.37 True fake: scaffold gap size wrong estimation (local) 96456240 96457078 290629 289791 NC_000014.9 scf131 100.0 True local misassembly 96455040 96455729 291424 290735 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96452485 96455023 295342 292804 NC_000014.9 scf131 99.96 True fake: scaffold gap size wrong estimation (local) 96450893 96451990 297822 296725 NC_000014.9 scf131 99.82 True fake: scaffold gap size wrong estimation (local) 96448048 96450352 301907 299483 NC_000014.9 scf131 95.62 True fake: scaffold gap size wrong estimation (local) 96446956 96448142 303787 302601 NC_000014.9 scf131 99.92 True fake: scaffold gap size wrong estimation (local) 96444820 96446955 306221 304086 NC_000014.9 scf131 99.95 True fake: scaffold gap size wrong estimation (local) 96441643 96443933 310083 307793 NC_000014.9 scf131 99.96 True fake: scaffold gap size wrong estimation (local) 96440139 96441497 312522 311164 NC_000014.9 scf131 100.0 True fake: scaffold gap size wrong estimation (local) 96433176 96440216 321059 313285 NC_000014.9 scf131 99.87 True fake: scaffold gap size wrong estimation (local) 96430738 96431983 324289 322989 NC_000014.9 scf131 95.77 True CONTIG scf131 324289 correct 28641268 28642126 1727 2585 NC_000014.9 scf132 99.88 True fake: scaffold gap size wrong estimation (local) 28642870 28643973 3218 4321 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28643915 28649356 5132 10638 NC_000014.9 scf132 98.71 True fake: scaffold gap size wrong estimation (local) 28649447 28652390 11541 14484 NC_000014.9 scf132 99.93 True fake: scaffold gap size wrong estimation (local) 28652301 28664105 15194 26998 NC_000014.9 scf132 99.92 True fake: scaffold gap size wrong estimation (local) 28665012 28683790 28584 47363 NC_000014.9 scf132 99.95 True fake: scaffold gap size wrong estimation (local) 28683702 28686093 48114 50505 NC_000014.9 scf132 99.96 True fake: scaffold gap size wrong estimation (local) 28686000 28692579 51177 57755 NC_000014.9 scf132 99.95 True fake: scaffold gap size wrong estimation (local) 28692480 28696469 58408 62397 NC_000014.9 scf132 99.87 True fake: scaffold gap size wrong estimation (local) 28696410 28705259 63122 73562 NC_000014.9 scf132 99.38 True fake: scaffold gap size wrong estimation (local) 28705530 28712120 74538 81129 NC_000014.9 scf132 99.8 True fake: scaffold gap size wrong estimation (local) 28712026 28716091 81787 85824 NC_000014.9 scf132 99.21 True fake: scaffold gap size wrong estimation (local) 28716244 28717791 86776 88323 NC_000014.9 scf132 99.74 True fake: scaffold gap size wrong estimation (local) 28717721 28724217 89102 95574 NC_000014.9 scf132 99.38 True fake: scaffold gap size wrong estimation (local) 28724121 28725275 96711 97862 NC_000014.9 scf132 99.39 True fake: scaffold gap size wrong estimation (local) 28725181 28728996 98786 102601 NC_000014.9 scf132 99.66 True fake: scaffold gap size wrong estimation (local) 28728897 28735595 103258 109956 NC_000014.9 scf132 99.79 True fake: scaffold gap size wrong estimation (local) 28735503 28739503 110600 114600 NC_000014.9 scf132 99.8 True fake: scaffold gap size wrong estimation (local) 28739405 28748630 115240 124484 NC_000014.9 scf132 99.6 True fake: scaffold gap size wrong estimation (local) 28749365 28750897 125911 127443 NC_000014.9 scf132 99.93 True fake: scaffold gap size wrong estimation (local) 28750832 28752473 129201 130875 NC_000014.9 scf132 97.97 True fake: scaffold gap size wrong estimation (local) 28752377 28767158 131538 146374 NC_000014.9 scf132 99.57 True fake: scaffold gap size wrong estimation (local) 28767622 28786647 147581 166605 NC_000014.9 scf132 99.99 True fake: scaffold gap size wrong estimation (local) 28786548 28788259 167355 169066 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28788162 28790713 169862 172413 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28790631 28792373 173124 174862 NC_000014.9 scf132 99.77 True fake: scaffold gap size wrong estimation (local) 28792510 28801166 175814 184470 NC_000014.9 scf132 99.95 True fake: scaffold gap size wrong estimation (local) 28801100 28803598 185164 187658 NC_000014.9 scf132 99.76 True fake: scaffold gap size wrong estimation (local) 28803503 28804504 189033 190034 NC_000014.9 scf132 99.7 True local misassembly 28805183 28805771 190035 190623 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28805697 28829611 192272 220916 NC_000014.9 scf132 98.58 True fake: scaffold gap size wrong estimation (local) 28829972 28837036 221969 229033 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28836939 28840805 229715 233581 NC_000014.9 scf132 99.97 True fake: scaffold gap size wrong estimation (local) 28840917 28843967 234450 237498 NC_000014.9 scf132 99.93 True fake: scaffold gap size wrong estimation (local) 28843871 28846395 238169 240693 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28847126 28847773 242187 242834 NC_000014.9 scf132 100.0 True fake: scaffold gap size wrong estimation (local) 28847674 28848216 244067 244623 NC_000014.9 scf132 97.49 True CONTIG scf132 244623 correct 46342277 46351565 10020 1 NC_000014.9 scf133 99.74 True fake: scaffold gap size wrong estimation (local) 46337078 46342371 15904 10612 NC_000014.9 scf133 99.92 True fake: scaffold gap size wrong estimation (local) 46321137 46337158 33244 16544 NC_000014.9 scf133 99.06 True fake: scaffold gap size wrong estimation (local) 46317641 46320865 37947 34723 NC_000014.9 scf133 99.94 True local misassembly 46316810 46317453 38591 37948 NC_000014.9 scf133 100.0 True fake: scaffold gap size wrong estimation (local) 46297336 46316810 58930 39472 NC_000014.9 scf133 99.85 True fake: scaffold gap size wrong estimation (local) 46295754 46297431 61235 59560 NC_000014.9 scf133 99.82 True fake: scaffold gap size wrong estimation (local) 46286739 46295815 71031 61952 NC_000014.9 scf133 99.97 True fake: scaffold gap size wrong estimation (local) 46280348 46286616 78994 71943 NC_000014.9 scf133 98.57 True fake: scaffold gap size wrong estimation (local) 46272036 46280441 88057 79633 NC_000014.9 scf133 99.49 True fake: scaffold gap size wrong estimation (local) 46266637 46272134 95250 89674 NC_000014.9 scf133 98.39 True fake: scaffold gap size wrong estimation (local) 46251939 46266189 110177 96456 NC_000014.9 scf133 95.92 True fake: scaffold gap size wrong estimation (local) 46238448 46252036 126358 111187 NC_000014.9 scf133 99.27 True fake: scaffold gap size wrong estimation (local) 46233235 46237990 132368 127613 NC_000014.9 scf133 99.96 True fake: scaffold gap size wrong estimation (local) 46227836 46231128 138293 135003 NC_000014.9 scf133 99.88 True fake: scaffold gap size wrong estimation (local) 46224903 46225981 141901 140823 NC_000014.9 scf133 99.91 True indel: indel (<= 5bp) 46224202 46224899 142599 141902 NC_000014.9 scf133 99.86 True fake: scaffold gap size wrong estimation (local) 46217639 46224095 149939 143480 NC_000014.9 scf133 99.88 True fake: scaffold gap size wrong estimation (local) 46207742 46217721 160582 150602 NC_000014.9 scf133 99.92 True fake: scaffold gap size wrong estimation (local) 46203608 46206625 166610 162391 NC_000014.9 scf133 98.79 True fake: scaffold gap size wrong estimation (local) 46199563 46203703 171531 167393 NC_000014.9 scf133 99.47 True fake: scaffold gap size wrong estimation (local) 46191354 46199638 180451 172163 NC_000014.9 scf133 99.84 True fake: scaffold gap size wrong estimation (local) 46182915 46191448 189619 181079 NC_000014.9 scf133 99.84 True CONTIG scf133 189621 correct 85844867 85846410 1551 1 NC_000014.9 scf134 98.91 True fake: scaffold gap size wrong estimation (local) 85834452 85844647 13563 2608 NC_000014.9 scf134 99.91 True fake: scaffold gap size wrong estimation (local) 85831964 85834539 16850 14275 NC_000014.9 scf134 99.92 True fake: scaffold gap size wrong estimation (local) 85830426 85832061 19220 17572 NC_000014.9 scf134 99.09 True fake: scaffold gap size wrong estimation (local) 85827590 85828564 22691 21723 NC_000014.9 scf134 99.18 True fake: scaffold gap size wrong estimation (local) 85808420 85826802 45091 24252 NC_000014.9 scf134 99.58 True fake: scaffold gap size wrong estimation (local) 85806928 85808498 47460 45890 NC_000014.9 scf134 99.81 True local misassembly 85805400 85806760 48821 47461 NC_000014.9 scf134 100.0 True fake: scaffold gap size wrong estimation (local) 85800783 85805361 54227 49649 NC_000014.9 scf134 99.91 True fake: scaffold gap size wrong estimation (local) 85778666 85800866 77902 54905 NC_000014.9 scf134 99.08 True fake: scaffold gap size wrong estimation (local) 85775562 85778738 81735 78649 NC_000014.9 scf134 96.73 True fake: scaffold gap size wrong estimation (local) 85770249 85775357 88575 82692 NC_000014.9 scf134 99.17 True fake: scaffold gap size wrong estimation (local) 85768208 85770341 91559 89426 NC_000014.9 scf134 99.91 True fake: scaffold gap size wrong estimation (local) 85761674 85768300 99669 92284 NC_000014.9 scf134 99.08 True fake: scaffold gap size wrong estimation (local) 85759987 85761277 102161 100871 NC_000014.9 scf134 99.69 True local misassembly 85761194 85761700 103271 102765 NC_000014.9 scf134 100.0 True fake: scaffold gap size wrong estimation (local) 85754485 85759776 110954 105663 NC_000014.9 scf134 99.79 True fake: scaffold gap size wrong estimation (local) 85753144 85754487 113224 111881 NC_000014.9 scf134 99.78 True local misassembly 85752206 85752926 113945 113225 NC_000014.9 scf134 99.72 True fake: scaffold gap size wrong estimation (local) 85747746 85752299 119593 115040 NC_000014.9 scf134 99.78 True fake: scaffold gap size wrong estimation (local) 85738426 85747404 129674 120692 NC_000014.9 scf134 99.79 True fake: scaffold gap size wrong estimation (local) 85737272 85737932 131949 131289 NC_000014.9 scf134 100.0 True fake: scaffold gap size wrong estimation (local) 85734112 85735036 135532 134608 NC_000014.9 scf134 100.0 True local misassembly 85733092 85733757 136330 135665 NC_000014.9 scf134 99.85 True fake: scaffold gap size wrong estimation (local) 85729854 85732607 140534 137781 NC_000014.9 scf134 99.82 True fake: scaffold gap size wrong estimation (local) 85728960 85729932 142384 141412 NC_000014.9 scf134 99.9 True local misassembly 85727562 85728796 143619 142385 NC_000014.9 scf134 99.76 True local misassembly 85726788 85727365 144197 143620 NC_000014.9 scf134 99.48 True fake: scaffold gap size wrong estimation (local) 85724961 85726674 146977 145265 NC_000014.9 scf134 99.94 True fake: scaffold gap size wrong estimation (local) 85719291 85725059 153478 147710 NC_000014.9 scf134 99.93 True fake: scaffold gap size wrong estimation (local) 85697996 85719382 176304 154102 NC_000014.9 scf134 99.58 True fake: scaffold gap size wrong estimation (local) 85693704 85697772 181345 177277 NC_000014.9 scf134 99.93 True fake: scaffold gap size wrong estimation (local) 85692854 85693803 183004 182057 NC_000014.9 scf134 99.79 True fake: scaffold gap size wrong estimation (local) 85689735 85692676 187197 184256 NC_000014.9 scf134 99.93 True fake: scaffold gap size wrong estimation (local) 85686557 85689451 191112 188218 NC_000014.9 scf134 99.62 True CONTIG scf134 191152 correct 95245281 95253673 8381 1 NC_000014.9 scf135 99.86 True fake: scaffold gap size wrong estimation (local) 95242461 95245011 11947 9398 NC_000014.9 scf135 99.8 True fake: scaffold gap size wrong estimation (local) 95231392 95242274 23797 12915 NC_000014.9 scf135 99.94 True fake: scaffold gap size wrong estimation (local) 95228817 95231263 27141 24695 NC_000014.9 scf135 99.92 True fake: scaffold gap size wrong estimation (local) 95224475 95228915 32228 27788 NC_000014.9 scf135 99.84 True fake: scaffold gap size wrong estimation (local) 95220397 95224552 37105 32950 NC_000014.9 scf135 99.95 True fake: scaffold gap size wrong estimation (local) 95215840 95220311 42423 37949 NC_000014.9 scf135 99.75 True fake: scaffold gap size wrong estimation (local) 95210262 95215930 49599 43217 NC_000014.9 scf135 96.09 True fake: scaffold gap size wrong estimation (local) 95206627 95210134 54036 50529 NC_000014.9 scf135 99.89 True fake: scaffold gap size wrong estimation (local) 95205661 95206724 55892 54829 NC_000014.9 scf135 99.72 True local misassembly 95204568 95205540 56865 55893 NC_000014.9 scf135 99.38 True fake: scaffold gap size wrong estimation (local) 95201853 95204664 60509 57698 NC_000014.9 scf135 99.86 True fake: scaffold gap size wrong estimation (local) 95198150 95201946 66121 61324 NC_000014.9 scf135 98.44 True fake: scaffold gap size wrong estimation (local) 95185283 95198062 79778 67001 NC_000014.9 scf135 99.95 True fake: scaffold gap size wrong estimation (local) 95177025 95185381 88810 80454 NC_000014.9 scf135 99.92 True fake: scaffold gap size wrong estimation (local) 95170283 95175737 96071 90746 NC_000014.9 scf135 97.62 True fake: scaffold gap size wrong estimation (local) 95161417 95170185 105834 97130 NC_000014.9 scf135 99.25 True fake: scaffold gap size wrong estimation (local) 95153172 95161493 115904 106601 NC_000014.9 scf135 98.59 True fake: scaffold gap size wrong estimation (local) 95150219 95153041 119609 116787 NC_000014.9 scf135 99.93 True fake: scaffold gap size wrong estimation (local) 95139000 95150314 131630 120316 NC_000014.9 scf135 99.96 True fake: scaffold gap size wrong estimation (local) 95123591 95137138 149353 134246 NC_000014.9 scf135 99.7 True fake: scaffold gap size wrong estimation (local) 95114033 95123683 160492 150030 NC_000014.9 scf135 99.0 True fake: scaffold gap size wrong estimation (local) 95107392 95114128 167923 161187 NC_000014.9 scf135 99.96 True fake: scaffold gap size wrong estimation (local) 95088684 95107490 187454 168652 NC_000014.9 scf135 99.95 True fake: scaffold gap size wrong estimation (local) 95084846 95088783 192053 188116 NC_000014.9 scf135 99.97 True fake: scaffold gap size wrong estimation (local) 95083374 95084940 194311 192745 NC_000014.9 scf135 99.94 True fake: scaffold gap size wrong estimation (local) 95076714 95083473 203055 196271 NC_000014.9 scf135 99.4 True fake: scaffold gap size wrong estimation (local) 95062712 95076432 217852 204131 NC_000014.9 scf135 99.83 True fake: scaffold gap size wrong estimation (local) 95059806 95062803 221537 218536 NC_000014.9 scf135 99.83 True fake: scaffold gap size wrong estimation (local) 95057611 95059880 224565 222300 NC_000014.9 scf135 99.65 True fake: scaffold gap size wrong estimation (local) 95056135 95057707 226975 225398 NC_000014.9 scf135 99.37 True fake: scaffold gap size wrong estimation (local) 95053907 95056191 230116 227832 NC_000014.9 scf135 99.82 True fake: scaffold gap size wrong estimation (local) 95051646 95053981 233266 230931 NC_000014.9 scf135 99.74 True fake: scaffold gap size wrong estimation (local) 95050069 95051695 235823 234224 NC_000014.9 scf135 98.09 True fake: scaffold gap size wrong estimation (local) 95036004 95049868 251554 236849 NC_000014.9 scf135 99.68 True fake: scaffold gap size wrong estimation (local) 95032293 95035691 255188 251790 NC_000014.9 scf135 99.88 True fake: scaffold gap size wrong estimation (local) 95028507 95032368 259742 255881 NC_000014.9 scf135 99.9 True fake: scaffold gap size wrong estimation (local) 95027741 95028593 261518 260666 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 95019364 95027835 270799 262328 NC_000014.9 scf135 99.89 True fake: scaffold gap size wrong estimation (local) 95010430 95019462 280470 271437 NC_000014.9 scf135 99.86 True fake: scaffold gap size wrong estimation (local) 94992642 95010278 298951 281318 NC_000014.9 scf135 99.93 True fake: scaffold gap size wrong estimation (local) 94988309 94992738 304024 299594 NC_000014.9 scf135 99.89 True fake: scaffold gap size wrong estimation (local) 94985710 94988387 307372 304782 NC_000014.9 scf135 96.31 True fake: scaffold gap size wrong estimation (local) 94981105 94985799 313179 308443 NC_000014.9 scf135 99.03 True fake: scaffold gap size wrong estimation (local) 94969123 94980991 326619 314040 NC_000014.9 scf135 98.83 True fake: scaffold gap size wrong estimation (local) 94953087 94969201 343399 327301 NC_000014.9 scf135 99.78 True fake: scaffold gap size wrong estimation (local) 94951033 94952033 346334 345334 NC_000014.9 scf135 99.6 True local misassembly 94949598 94950761 347498 346335 NC_000014.9 scf135 99.91 True fake: scaffold gap size wrong estimation (local) 94938765 94948955 360614 348825 NC_000014.9 scf135 96.25 True fake: scaffold gap size wrong estimation (local) 94929231 94938560 371540 361460 NC_000014.9 scf135 99.97 True fake: scaffold gap size wrong estimation (local) 94925126 94929066 376384 372444 NC_000014.9 scf135 99.97 True fake: scaffold gap size wrong estimation (local) 94918138 94924645 384090 377582 NC_000014.9 scf135 99.78 True fake: scaffold gap size wrong estimation (local) 94899802 94917827 403569 385499 NC_000014.9 scf135 99.32 True fake: scaffold gap size wrong estimation (local) 94890778 94899901 414172 404333 NC_000014.9 scf135 95.89 True fake: scaffold gap size wrong estimation (local) 94886088 94889279 419568 416375 NC_000014.9 scf135 99.75 True fake: scaffold gap size wrong estimation (local) 94882479 94885768 423943 420650 NC_000014.9 scf135 99.61 True fake: scaffold gap size wrong estimation (local) 94874640 94882552 432527 424613 NC_000014.9 scf135 99.84 True fake: scaffold gap size wrong estimation (local) 94872293 94874304 435675 433664 NC_000014.9 scf135 99.5 True fake: scaffold gap size wrong estimation (local) 94871429 94872179 436698 435948 NC_000014.9 scf135 99.73 True fake: scaffold gap size wrong estimation (local) 94865748 94871526 444242 437754 NC_000014.9 scf135 95.41 True fake: scaffold gap size wrong estimation (local) 94864188 94865686 446940 445442 NC_000014.9 scf135 99.87 True fake: scaffold gap size wrong estimation (local) 94855865 94864179 456072 447742 NC_000014.9 scf135 99.63 True fake: scaffold gap size wrong estimation (local) 94852517 94855963 460221 456775 NC_000014.9 scf135 99.97 True fake: scaffold gap size wrong estimation (local) 94841359 94852600 472124 460885 NC_000014.9 scf135 99.85 True fake: scaffold gap size wrong estimation (local) 94829702 94841447 484562 472819 NC_000014.9 scf135 99.87 True fake: scaffold gap size wrong estimation (local) 94818143 94829549 496916 485514 NC_000014.9 scf135 99.82 True fake: scaffold gap size wrong estimation (local) 94816127 94818226 499771 497672 NC_000014.9 scf135 99.86 True fake: scaffold gap size wrong estimation (local) 94802249 94816017 515083 500668 NC_000014.9 scf135 98.33 True fake: scaffold gap size wrong estimation (local) 94798975 94802339 519231 515869 NC_000014.9 scf135 99.91 True fake: scaffold gap size wrong estimation (local) 94791956 94799072 526993 519878 NC_000014.9 scf135 99.93 True fake: scaffold gap size wrong estimation (local) 94788936 94791806 530739 527869 NC_000014.9 scf135 99.93 True fake: scaffold gap size wrong estimation (local) 94786081 94788515 534426 531982 NC_000014.9 scf135 99.47 True fake: scaffold gap size wrong estimation (local) 94776720 94786164 545456 535132 NC_000014.9 scf135 99.76 True fake: scaffold gap size wrong estimation (local) 94768116 94776579 554867 546404 NC_000014.9 scf135 99.98 True fake: scaffold gap size wrong estimation (local) 94759626 94768202 564985 555619 NC_000014.9 scf135 99.59 True fake: scaffold gap size wrong estimation (local) 94755870 94759716 569543 565698 NC_000014.9 scf135 99.92 True fake: scaffold gap size wrong estimation (local) 94748276 94755782 580052 571672 NC_000014.9 scf135 99.99 True fake: scaffold gap size wrong estimation (local) 94747399 94748144 581734 580989 NC_000014.9 scf135 100.0 True indel: indel (<= 5bp) 94745660 94747393 583468 581735 NC_000014.9 scf135 99.94 True fake: scaffold gap size wrong estimation (local) 94744643 94745659 585427 584411 NC_000014.9 scf135 100.0 True indel: indel (> 5bp) 94744136 94744642 586000 585494 NC_000014.9 scf135 100.0 True local misassembly 94743264 94743829 586566 586001 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94739877 94742675 590827 588029 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94734829 94739692 596603 591740 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94733017 94734903 599241 597355 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94729922 94732083 603086 600925 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94728945 94729745 605136 604336 NC_000014.9 scf135 99.88 True local misassembly 94727014 94728635 606758 605137 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94714116 94727113 622145 607919 NC_000014.9 scf135 95.66 True fake: scaffold gap size wrong estimation (local) 94712554 94714214 624597 622937 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94704982 94712640 633966 625540 NC_000014.9 scf135 99.97 True fake: scaffold gap size wrong estimation (local) 94702584 94704646 637191 635129 NC_000014.9 scf135 100.0 True local misassembly 94701418 94702205 638006 637219 NC_000014.9 scf135 100.0 True fake: scaffold gap size wrong estimation (local) 94694228 94701165 646209 639268 NC_000014.9 scf135 99.88 True fake: scaffold gap size wrong estimation (local) 94692853 94693591 648466 647728 NC_000014.9 scf135 100.0 True indel: indel (> 5bp) 94692139 94692787 649115 648467 NC_000014.9 scf135 100.0 True local misassembly 94690381 94691965 650700 649116 NC_000014.9 scf135 99.87 True fake: scaffold gap size wrong estimation (local) 94689413 94690380 652628 651661 NC_000014.9 scf135 100.0 True indel: indel (<= 5bp) 94688555 94689410 653484 652629 NC_000014.9 scf135 99.88 True fake: scaffold gap size wrong estimation (local) 94684509 94688106 658251 654672 NC_000014.9 scf135 99.36 True fake: scaffold gap size wrong estimation (local) 94675709 94684318 668669 659280 NC_000014.9 scf135 99.19 True fake: scaffold gap size wrong estimation (local) 94671975 94675800 673260 669425 NC_000014.9 scf135 99.45 True fake: scaffold gap size wrong estimation (local) 94670562 94671787 675516 674291 NC_000014.9 scf135 99.67 True local misassembly 94669336 94670430 676611 675517 NC_000014.9 scf135 99.63 True fake: scaffold gap size wrong estimation (local) 94668265 94669423 678760 677602 NC_000014.9 scf135 99.74 True fake: scaffold gap size wrong estimation (local) 94667250 94668167 679865 678927 NC_000014.9 scf135 97.23 True fake: scaffold gap size wrong estimation (local) 94665030 94667347 683341 681024 NC_000014.9 scf135 99.14 True fake: scaffold gap size wrong estimation (local) 94659290 94665206 690043 684048 NC_000014.9 scf135 98.23 True CONTIG scf135 690043 correct 60343031 60361702 1 18675 NC_000014.9 scf136 99.98 True fake: scaffold gap size wrong estimation (local) 60361609 60378778 19275 37968 NC_000014.9 scf136 98.89 True fake: scaffold gap size wrong estimation (local) 60378730 60383136 38728 43982 NC_000014.9 scf136 97.53 True fake: scaffold gap size wrong estimation (local) 60383974 60385668 45620 47270 NC_000014.9 scf136 96.02 True fake: scaffold gap size wrong estimation (local) 60387354 60402724 49639 65009 NC_000014.9 scf136 100.0 True fake: scaffold gap size wrong estimation (local) 60402629 60405834 65676 68881 NC_000014.9 scf136 100.0 True fake: scaffold gap size wrong estimation (local) 60405735 60411617 69505 75387 NC_000014.9 scf136 100.0 True fake: scaffold gap size wrong estimation (local) 60411520 60414721 76077 79278 NC_000014.9 scf136 100.0 True fake: scaffold gap size wrong estimation (local) 60414891 60421455 80281 87759 NC_000014.9 scf136 99.66 True CONTIG scf136 87759 correct 65527135 65529564 1 2540 NC_000014.9 scf137 95.67 True fake: scaffold gap size wrong estimation (local) 65529471 65535390 3243 9161 NC_000014.9 scf137 99.98 True fake: scaffold gap size wrong estimation (local) 65535293 65546387 9837 21701 NC_000014.9 scf137 99.46 True fake: scaffold gap size wrong estimation (local) 65546291 65550021 22663 26444 NC_000014.9 scf137 98.65 True fake: scaffold gap size wrong estimation (local) 65549930 65584192 27183 63238 NC_000014.9 scf137 99.54 True fake: scaffold gap size wrong estimation (local) 65584345 65586977 64132 66764 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65587144 65589528 67733 70117 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65589669 65595933 71091 77354 NC_000014.9 scf137 99.98 True fake: scaffold gap size wrong estimation (local) 65595835 65597534 78100 79799 NC_000014.9 scf137 99.94 True local misassembly 65597784 65599123 79800 81139 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65599029 65602385 82032 85388 NC_000014.9 scf137 99.97 True fake: scaffold gap size wrong estimation (local) 65602303 65606130 86634 90525 NC_000014.9 scf137 97.64 True fake: scaffold gap size wrong estimation (local) 65606263 65608043 91470 93250 NC_000014.9 scf137 99.94 True local misassembly 65608258 65609165 93263 94170 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65609295 65611210 95315 97258 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65611906 65614123 98991 101208 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65614076 65617801 101938 105663 NC_000014.9 scf137 99.97 True fake: scaffold gap size wrong estimation (local) 65618046 65621442 106646 110042 NC_000014.9 scf137 99.97 True fake: scaffold gap size wrong estimation (local) 65621347 65623027 110729 112409 NC_000014.9 scf137 100.0 True indel: indel (> 5bp) 65623139 65624837 112462 114160 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65624743 65633115 114866 123238 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65634562 65642475 125376 133289 NC_000014.9 scf137 99.99 True fake: scaffold gap size wrong estimation (local) 65642381 65650226 134014 142626 NC_000014.9 scf137 97.59 True relocation, inconsistency = -473923 65176304 65178496 142627 144819 NC_000014.9 scf137 99.87 True fake: scaffold gap size wrong estimation (local) 65178686 65179287 145631 146232 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65179356 65192188 147361 160992 NC_000014.9 scf137 98.14 True fake: scaffold gap size wrong estimation (local) 65192141 65195434 161827 165120 NC_000014.9 scf137 99.85 True fake: scaffold gap size wrong estimation (local) 65195355 65201919 165777 173078 NC_000014.9 scf137 97.92 True fake: scaffold gap size wrong estimation (local) 65201861 65203644 173985 175768 NC_000014.9 scf137 99.83 True fake: scaffold gap size wrong estimation (local) 65204045 65205287 177171 178413 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65205606 65207649 180424 182467 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65208137 65208898 183861 184622 NC_000014.9 scf137 100.0 True local misassembly 65209271 65210298 184860 185887 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65210199 65211956 186659 188416 NC_000014.9 scf137 100.0 True local misassembly 65212413 65213894 188594 190075 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65213802 65218010 190881 195089 NC_000014.9 scf137 99.95 True fake: scaffold gap size wrong estimation (local) 65218231 65223975 196105 201849 NC_000014.9 scf137 99.98 True fake: scaffold gap size wrong estimation (local) 65223893 65227984 203136 207275 NC_000014.9 scf137 98.79 True fake: scaffold gap size wrong estimation (local) 65228196 65229174 208432 209410 NC_000014.9 scf137 100.0 True local misassembly 65229335 65231104 209411 211180 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65231105 65232744 211982 213621 NC_000014.9 scf137 100.0 True local misassembly 65232906 65233494 213622 214210 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65233407 65235802 215096 217491 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65235712 65240660 218200 223147 NC_000014.9 scf137 99.98 True fake: scaffold gap size wrong estimation (local) 65241223 65248409 224574 231625 NC_000014.9 scf137 98.12 True fake: scaffold gap size wrong estimation (local) 65248670 65250978 232688 234996 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65250889 65262906 235764 250240 NC_000014.9 scf137 98.93 True fake: scaffold gap size wrong estimation (local) 65262812 65264751 250951 252890 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65265167 65266396 255324 256584 NC_000014.9 scf137 97.54 True fake: scaffold gap size wrong estimation (local) 65267616 65270245 258575 261204 NC_000014.9 scf137 99.92 True fake: scaffold gap size wrong estimation (local) 65270146 65279159 261964 272477 NC_000014.9 scf137 99.63 True fake: scaffold gap size wrong estimation (local) 65279081 65290621 273228 286339 NC_000014.9 scf137 99.4 True fake: scaffold gap size wrong estimation (local) 65290860 65292391 287472 289003 NC_000014.9 scf137 100.0 True local misassembly 65292748 65293513 289004 289769 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65293649 65294612 290772 291750 NC_000014.9 scf137 98.47 True fake: scaffold gap size wrong estimation (local) 65294736 65298927 292777 296978 NC_000014.9 scf137 99.67 True fake: scaffold gap size wrong estimation (local) 65298852 65304851 297655 303654 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65304779 65308025 304340 307584 NC_000014.9 scf137 99.94 True fake: scaffold gap size wrong estimation (local) 65307932 65309337 308251 309656 NC_000014.9 scf137 100.0 True indel: indel (> 5bp) 65309525 65314867 309774 315116 NC_000014.9 scf137 99.74 True fake: scaffold gap size wrong estimation (local) 65315610 65316573 316606 317569 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65317735 65323733 319619 325617 NC_000014.9 scf137 99.95 True fake: scaffold gap size wrong estimation (local) 65323641 65324404 326416 327179 NC_000014.9 scf137 100.0 True local misassembly 65324527 65325087 327180 327740 NC_000014.9 scf137 100.0 True fake: scaffold gap size wrong estimation (local) 65325842 65326893 328351 329402 NC_000014.9 scf137 99.62 True fake: scaffold gap size wrong estimation (local) 65327095 65336091 330402 340158 NC_000014.9 scf137 99.77 True fake: scaffold gap size wrong estimation (local) 65335993 65345887 340866 352574 NC_000014.9 scf137 99.27 True relocation, inconsistency = 5866218 71212106 71219026 359494 352575 NC_000014.9 scf137 99.78 True fake: scaffold gap size wrong estimation (local) 71205386 71212202 366940 360283 NC_000014.9 scf137 97.45 True fake: scaffold gap size wrong estimation (local) 71204019 71205478 369167 367708 NC_000014.9 scf137 100.0 True CONTIG scf137 369178 misassembled 44324967 44347896 1 23697 NC_000014.9 scf138 99.75 True fake: scaffold gap size wrong estimation (local) 44347797 44366381 24387 42971 NC_000014.9 scf138 99.97 True fake: scaffold gap size wrong estimation (local) 44366584 44385797 43911 65386 NC_000014.9 scf138 99.01 True fake: scaffold gap size wrong estimation (local) 44385703 44388377 65800 68474 NC_000014.9 scf138 99.96 True fake: scaffold gap size wrong estimation (local) 44388336 44390558 69185 71392 NC_000014.9 scf138 98.25 True fake: scaffold gap size wrong estimation (local) 44390468 44408830 72150 90511 NC_000014.9 scf138 99.97 True fake: scaffold gap size wrong estimation (local) 44408941 44424390 91440 106888 NC_000014.9 scf138 99.94 True fake: scaffold gap size wrong estimation (local) 44424293 44425846 107537 109090 NC_000014.9 scf138 99.87 True fake: scaffold gap size wrong estimation (local) 44425754 44429139 109805 113190 NC_000014.9 scf138 99.94 True fake: scaffold gap size wrong estimation (local) 44429468 44437891 114252 122675 NC_000014.9 scf138 99.95 True fake: scaffold gap size wrong estimation (local) 44437892 44439715 123489 125312 NC_000014.9 scf138 99.78 True fake: scaffold gap size wrong estimation (local) 44440993 44441784 127425 128216 NC_000014.9 scf138 100.0 True fake: scaffold gap size wrong estimation (local) 44441829 44447798 130209 136857 NC_000014.9 scf138 97.21 True fake: scaffold gap size wrong estimation (local) 44447708 44449877 137618 139787 NC_000014.9 scf138 99.86 True fake: scaffold gap size wrong estimation (local) 44449778 44457900 140456 148577 NC_000014.9 scf138 99.9 True fake: scaffold gap size wrong estimation (local) 44458378 44460992 149730 152344 NC_000014.9 scf138 99.81 True fake: scaffold gap size wrong estimation (local) 44461401 44464112 153517 156228 NC_000014.9 scf138 100.0 True fake: scaffold gap size wrong estimation (local) 44464295 44465716 157289 158710 NC_000014.9 scf138 99.86 True local misassembly 44465888 44467571 158711 160394 NC_000014.9 scf138 100.0 True fake: scaffold gap size wrong estimation (local) 44467839 44470642 161427 164230 NC_000014.9 scf138 99.93 True fake: scaffold gap size wrong estimation (local) 44470552 44471291 165151 165890 NC_000014.9 scf138 100.0 True CONTIG scf138 165890 correct 68434240 68434934 1 695 NC_000014.9 scf139 100.0 True indel: indel (> 5bp) 68435016 68435580 696 1260 NC_000014.9 scf139 99.82 True fake: scaffold gap size wrong estimation (local) 68435491 68439257 2017 5777 NC_000014.9 scf139 99.73 True fake: scaffold gap size wrong estimation (local) 68439159 68441313 6486 8639 NC_000014.9 scf139 99.72 True fake: scaffold gap size wrong estimation (local) 68441544 68442458 9117 10031 NC_000014.9 scf139 99.78 True fake: scaffold gap size wrong estimation (local) 68442568 68447033 11001 15462 NC_000014.9 scf139 99.8 True fake: scaffold gap size wrong estimation (local) 68446977 68457744 16177 27686 NC_000014.9 scf139 99.54 True fake: scaffold gap size wrong estimation (local) 68457857 68484397 28611 56759 NC_000014.9 scf139 99.68 True fake: scaffold gap size wrong estimation (local) 68484553 68494159 57691 67296 NC_000014.9 scf139 99.95 True fake: scaffold gap size wrong estimation (local) 68494283 68515521 68175 90196 NC_000014.9 scf139 99.83 True fake: scaffold gap size wrong estimation (local) 68515951 68530462 91392 105829 NC_000014.9 scf139 99.41 True fake: scaffold gap size wrong estimation (local) 68530861 68537192 106938 113269 NC_000014.9 scf139 99.79 True fake: scaffold gap size wrong estimation (local) 68537326 68545834 114124 122629 NC_000014.9 scf139 99.86 True fake: scaffold gap size wrong estimation (local) 68545753 68549478 123357 127081 NC_000014.9 scf139 99.95 True fake: scaffold gap size wrong estimation (local) 68549623 68555115 127991 133483 NC_000014.9 scf139 99.98 True fake: scaffold gap size wrong estimation (local) 68555026 68559481 134193 138648 NC_000014.9 scf139 99.93 True fake: scaffold gap size wrong estimation (local) 68559395 68565233 139388 145071 NC_000014.9 scf139 97.21 True fake: scaffold gap size wrong estimation (local) 68565152 68574068 145770 155464 NC_000014.9 scf139 99.16 True fake: scaffold gap size wrong estimation (local) 68573981 68582003 156109 164131 NC_000014.9 scf139 99.85 True fake: scaffold gap size wrong estimation (local) 68582041 68582668 165492 166135 NC_000014.9 scf139 97.52 True fake: scaffold gap size wrong estimation (local) 68582792 68586931 167318 171457 NC_000014.9 scf139 99.88 True fake: scaffold gap size wrong estimation (local) 68586855 68613212 172106 200851 NC_000014.9 scf139 99.4 True fake: scaffold gap size wrong estimation (local) 68613548 68615402 202038 203892 NC_000014.9 scf139 99.73 True fake: scaffold gap size wrong estimation (local) 68615536 68632053 204820 221337 NC_000014.9 scf139 99.97 True fake: scaffold gap size wrong estimation (local) 68631966 68653484 222114 244998 NC_000014.9 scf139 98.93 True fake: scaffold gap size wrong estimation (local) 68653390 68655152 245776 247538 NC_000014.9 scf139 99.94 True fake: scaffold gap size wrong estimation (local) 68655063 68711707 249098 308244 NC_000014.9 scf139 99.78 True fake: scaffold gap size wrong estimation (local) 68711615 68726513 308925 324596 NC_000014.9 scf139 99.84 True fake: scaffold gap size wrong estimation (local) 68726420 68732640 325464 332290 NC_000014.9 scf139 95.79 True fake: scaffold gap size wrong estimation (local) 68732725 68736376 333129 336780 NC_000014.9 scf139 100.0 True fake: scaffold gap size wrong estimation (local) 68736278 68738175 337507 339404 NC_000014.9 scf139 99.89 True fake: scaffold gap size wrong estimation (local) 68738077 68740262 340249 342433 NC_000014.9 scf139 99.86 True fake: scaffold gap size wrong estimation (local) 68740183 68743872 343164 346861 NC_000014.9 scf139 99.78 True fake: scaffold gap size wrong estimation (local) 68743778 68751615 347536 355373 NC_000014.9 scf139 99.92 True fake: scaffold gap size wrong estimation (local) 68751519 68762219 356046 368269 NC_000014.9 scf139 98.53 True fake: scaffold gap size wrong estimation (local) 68762148 68775338 368966 382149 NC_000014.9 scf139 99.88 True fake: scaffold gap size wrong estimation (local) 68775250 68792878 382836 401354 NC_000014.9 scf139 99.61 True fake: scaffold gap size wrong estimation (local) 68792817 68798355 402077 407615 NC_000014.9 scf139 99.91 True fake: scaffold gap size wrong estimation (local) 68798523 68799409 409041 409927 NC_000014.9 scf139 100.0 True fake: scaffold gap size wrong estimation (local) 68799607 68805878 410999 418051 NC_000014.9 scf139 99.61 True fake: scaffold gap size wrong estimation (local) 68805789 68811875 418714 424859 NC_000014.9 scf139 98.94 True fake: scaffold gap size wrong estimation (local) 68812033 68823678 425710 438158 NC_000014.9 scf139 99.63 True fake: scaffold gap size wrong estimation (local) 68823579 68827293 438900 442617 NC_000014.9 scf139 99.84 True fake: scaffold gap size wrong estimation (local) 68827751 68835056 443887 451964 NC_000014.9 scf139 98.45 True fake: scaffold gap size wrong estimation (local) 68835330 68841178 452988 458836 NC_000014.9 scf139 99.69 True fake: scaffold gap size wrong estimation (local) 68841085 68847845 459600 466999 NC_000014.9 scf139 97.66 True fake: scaffold gap size wrong estimation (local) 68847989 68853069 467601 475132 NC_000014.9 scf139 99.0 True fake: scaffold gap size wrong estimation (local) 68853272 68859732 476105 483363 NC_000014.9 scf139 99.25 True fake: scaffold gap size wrong estimation (local) 68860479 68862232 484811 486564 NC_000014.9 scf139 98.19 True fake: scaffold gap size wrong estimation (local) 68863958 68865015 489030 490087 NC_000014.9 scf139 99.43 True fake: scaffold gap size wrong estimation (local) 68864947 68866103 491960 493116 NC_000014.9 scf139 99.91 True fake: scaffold gap size wrong estimation (local) 68866145 68868618 495824 498308 NC_000014.9 scf139 99.24 True fake: scaffold gap size wrong estimation (local) 68868965 68889712 499585 522579 NC_000014.9 scf139 98.05 True fake: scaffold gap size wrong estimation (local) 68889615 68899140 523278 532803 NC_000014.9 scf139 99.99 True CONTIG scf139 532803 correct 67874014 67906935 1 36676 NC_000014.9 scf140 99.68 True fake: scaffold gap size wrong estimation (local) 67906858 67912853 37402 44172 NC_000014.9 scf140 95.62 True fake: scaffold gap size wrong estimation (local) 67912769 67916470 44869 48570 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 67916372 67939982 49275 76077 NC_000014.9 scf140 98.18 True fake: scaffold gap size wrong estimation (local) 67940331 67946630 77162 84259 NC_000014.9 scf140 99.73 True fake: scaffold gap size wrong estimation (local) 67946532 67948780 84952 87200 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 67948938 67961179 88165 101925 NC_000014.9 scf140 99.98 True fake: scaffold gap size wrong estimation (local) 67961081 67968740 102635 110294 NC_000014.9 scf140 99.97 True fake: scaffold gap size wrong estimation (local) 67968671 67976551 110995 118875 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 67976964 67982946 120004 125986 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 67982848 67984274 126700 128141 NC_000014.9 scf140 98.96 True fake: scaffold gap size wrong estimation (local) 67984180 67989656 128974 134296 NC_000014.9 scf140 97.19 True fake: scaffold gap size wrong estimation (local) 67989602 68023568 135357 170553 NC_000014.9 scf140 98.68 True fake: scaffold gap size wrong estimation (local) 68023472 68031208 171237 178973 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 68031161 68034304 179678 182821 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 68034210 68037120 183530 186439 NC_000014.9 scf140 99.97 True fake: scaffold gap size wrong estimation (local) 68037332 68048479 187424 199320 NC_000014.9 scf140 99.54 True fake: scaffold gap size wrong estimation (local) 68049255 68057093 200794 208632 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 68057011 68061213 209305 213490 NC_000014.9 scf140 99.52 True fake: scaffold gap size wrong estimation (local) 68061116 68062652 214177 215713 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 68062834 68067283 216641 222285 NC_000014.9 scf140 99.24 True relocation, inconsistency = -36816048 31251236 31252635 222286 223685 NC_000014.9 scf140 99.86 True indel: indel (> 5bp) 31252811 31253554 223806 224549 NC_000014.9 scf140 99.87 True fake: not a misassembly (possible transposable element) 68068839 68070747 224551 226459 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 31254626 31259283 226460 231110 NC_000014.9 scf140 99.68 True fake: not a misassembly (possible transposable element) 68073741 68077750 231111 235120 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 31261549 31263125 235121 236697 NC_000014.9 scf140 99.87 True fake: not a misassembly (possible transposable element) 68078570 68082228 236713 240371 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 31265027 31266875 240372 242220 NC_000014.9 scf140 99.95 True fake: not a misassembly (possible transposable element) 68083310 68087832 242242 246764 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 31270673 31272260 246765 248352 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 68088671 68090756 248353 250438 NC_000014.9 scf140 100.0 True fake: not a misassembly (possible transposable element) 31273576 31276262 250439 253098 NC_000014.9 scf140 96.76 True fake: scaffold gap size wrong estimation (local) 31277010 31278027 255803 256820 NC_000014.9 scf140 99.71 True fake: scaffold gap size wrong estimation (local) 31278660 31282651 258258 262288 NC_000014.9 scf140 98.98 True fake: scaffold gap size wrong estimation (local) 31282555 31284477 263069 264991 NC_000014.9 scf140 99.9 True fake: scaffold gap size wrong estimation (local) 31285746 31289397 266887 270551 NC_000014.9 scf140 99.59 True fake: scaffold gap size wrong estimation (local) 31290368 31292643 272213 274488 NC_000014.9 scf140 99.96 True fake: scaffold gap size wrong estimation (local) 31292586 31299595 275251 283067 NC_000014.9 scf140 99.56 True fake: scaffold gap size wrong estimation (local) 31299517 31301829 283884 286196 NC_000014.9 scf140 100.0 True local misassembly 31302262 31302938 286197 286873 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31303254 31304562 288303 289611 NC_000014.9 scf140 98.93 True local misassembly 31304822 31305457 289612 290247 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31305400 31326746 292239 316075 NC_000014.9 scf140 98.9 True fake: scaffold gap size wrong estimation (local) 31327301 31329983 317311 319939 NC_000014.9 scf140 97.61 True fake: scaffold gap size wrong estimation (local) 31329902 31332897 320846 324188 NC_000014.9 scf140 97.21 True fake: scaffold gap size wrong estimation (local) 31334989 31335952 326895 327858 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31336257 31339040 329440 332224 NC_000014.9 scf140 99.86 True fake: scaffold gap size wrong estimation (local) 31338957 31344295 332953 339090 NC_000014.9 scf140 99.74 True fake: scaffold gap size wrong estimation (local) 31344847 31349399 339430 343982 NC_000014.9 scf140 99.87 True fake: scaffold gap size wrong estimation (local) 31349323 31351098 344645 346416 NC_000014.9 scf140 99.66 True fake: scaffold gap size wrong estimation (local) 31351003 31353901 347191 350096 NC_000014.9 scf140 99.72 True fake: scaffold gap size wrong estimation (local) 31353812 31355700 350821 352706 NC_000014.9 scf140 99.42 True fake: scaffold gap size wrong estimation (local) 31355605 31359387 353329 357101 NC_000014.9 scf140 99.66 True fake: scaffold gap size wrong estimation (local) 31359735 31361982 358262 360508 NC_000014.9 scf140 99.91 True fake: scaffold gap size wrong estimation (local) 31361894 31363259 360926 362298 NC_000014.9 scf140 99.42 True fake: scaffold gap size wrong estimation (local) 31363185 31374319 363362 377273 NC_000014.9 scf140 97.0 True fake: scaffold gap size wrong estimation (local) 31374277 31378703 378010 383116 NC_000014.9 scf140 98.21 True fake: scaffold gap size wrong estimation (local) 31379028 31381137 384384 386493 NC_000014.9 scf140 99.95 True fake: scaffold gap size wrong estimation (local) 31381562 31394701 387685 401606 NC_000014.9 scf140 99.13 True fake: scaffold gap size wrong estimation (local) 31394630 31397732 402292 405394 NC_000014.9 scf140 99.81 True fake: scaffold gap size wrong estimation (local) 31397641 31408944 406150 418984 NC_000014.9 scf140 99.07 True fake: scaffold gap size wrong estimation (local) 31409096 31412087 419991 422983 NC_000014.9 scf140 99.9 True fake: scaffold gap size wrong estimation (local) 31412002 31413470 424239 425650 NC_000014.9 scf140 95.71 True fake: scaffold gap size wrong estimation (local) 31413386 31416276 426672 429562 NC_000014.9 scf140 99.9 True fake: scaffold gap size wrong estimation (local) 31416178 31427687 430275 443495 NC_000014.9 scf140 98.57 True fake: scaffold gap size wrong estimation (local) 31427805 31431083 444404 447681 NC_000014.9 scf140 99.91 True fake: scaffold gap size wrong estimation (local) 31430992 31432689 448377 450075 NC_000014.9 scf140 99.71 True fake: scaffold gap size wrong estimation (local) 31432822 31436751 450981 454909 NC_000014.9 scf140 99.8 True fake: scaffold gap size wrong estimation (local) 31438111 31440355 456979 459222 NC_000014.9 scf140 99.87 True fake: scaffold gap size wrong estimation (local) 31440902 31442487 460592 462171 NC_000014.9 scf140 99.62 True fake: scaffold gap size wrong estimation (local) 31442389 31443410 463935 464956 NC_000014.9 scf140 99.9 True local misassembly 31444525 31445316 464957 465748 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31445428 31451184 467939 474469 NC_000014.9 scf140 95.11 True fake: scaffold gap size wrong estimation (local) 31451328 31455546 475626 480734 NC_000014.9 scf140 98.14 True fake: scaffold gap size wrong estimation (local) 31456119 31459853 482035 485769 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31460126 31462633 486829 489336 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31462537 31463800 490181 491444 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31463715 31464472 492937 493694 NC_000014.9 scf140 100.0 True local misassembly 31464967 31465825 493695 494553 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31465826 31467502 495874 497550 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31468550 31473832 499657 504939 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31474025 31477738 505892 509605 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31478061 31480989 510690 513618 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31481109 31485469 514590 519699 NC_000014.9 scf140 99.93 True fake: scaffold gap size wrong estimation (local) 31485371 31486218 520528 521375 NC_000014.9 scf140 100.0 True local misassembly 31486309 31487456 521376 522523 NC_000014.9 scf140 100.0 True local misassembly 31487836 31489017 522524 523705 NC_000014.9 scf140 99.83 True fake: scaffold gap size wrong estimation (local) 31488923 31495358 525364 531800 NC_000014.9 scf140 99.91 True fake: scaffold gap size wrong estimation (local) 31495260 31496258 532664 533662 NC_000014.9 scf140 99.9 True fake: scaffold gap size wrong estimation (local) 31496812 31497401 534117 534706 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31497358 31509817 535539 549855 NC_000014.9 scf140 98.31 True fake: scaffold gap size wrong estimation (local) 31509722 31516056 550553 556887 NC_000014.9 scf140 99.89 True fake: scaffold gap size wrong estimation (local) 31516267 31518141 557801 559675 NC_000014.9 scf140 99.95 True local misassembly 31518304 31519198 559676 560570 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31519220 31526745 561612 568928 NC_000014.9 scf140 97.2 True fake: scaffold gap size wrong estimation (local) 31526935 31529061 569924 572050 NC_000014.9 scf140 99.81 True fake: scaffold gap size wrong estimation (local) 31529100 31531142 572993 575035 NC_000014.9 scf140 99.95 True local misassembly 31531453 31531978 575036 575561 NC_000014.9 scf140 100.0 True fake: scaffold gap size wrong estimation (local) 31531879 31540069 577502 585723 NC_000014.9 scf140 99.56 True fake: scaffold gap size wrong estimation (local) 31540285 31559672 586647 608362 NC_000014.9 scf140 99.42 True fake: scaffold gap size wrong estimation (local) 31559925 31562603 609394 612072 NC_000014.9 scf140 99.96 True fake: scaffold gap size wrong estimation (local) 31562716 31567247 613144 618498 NC_000014.9 scf140 95.77 True fake: scaffold gap size wrong estimation (local) 31567166 31569334 619228 621396 NC_000014.9 scf140 99.91 True fake: scaffold gap size wrong estimation (local) 31569241 31571567 622151 624477 NC_000014.9 scf140 99.87 True fake: scaffold gap size wrong estimation (local) 31572186 31574584 625844 628242 NC_000014.9 scf140 99.96 True fake: scaffold gap size wrong estimation (local) 31574791 31588697 629220 643892 NC_000014.9 scf140 99.64 True fake: scaffold gap size wrong estimation (local) 31588920 31593341 644805 649226 NC_000014.9 scf140 99.95 True fake: scaffold gap size wrong estimation (local) 31593514 31600722 650170 657391 NC_000014.9 scf140 99.63 True CONTIG scf140 657391 misassembled 43000076 43017062 1 16987 NC_000014.9 scf141 99.99 True fake: scaffold gap size wrong estimation (local) 43017439 43025296 18103 25960 NC_000014.9 scf141 100.0 True fake: scaffold gap size wrong estimation (local) 43025870 43062441 27278 65395 NC_000014.9 scf141 99.67 True CONTIG scf141 65395 correct 65650299 65654470 16 4186 NC_000014.9 scf142 99.98 True fake: scaffold gap size wrong estimation (local) 65654376 65665878 4961 16276 NC_000014.9 scf142 98.3 True fake: scaffold gap size wrong estimation (local) 65665786 65675856 16906 26976 NC_000014.9 scf142 99.99 True fake: scaffold gap size wrong estimation (local) 65675783 65690993 27731 42796 NC_000014.9 scf142 98.75 True fake: scaffold gap size wrong estimation (local) 65690934 65691711 43556 44333 NC_000014.9 scf142 99.87 True fake: scaffold gap size wrong estimation (local) 65693366 65694709 46716 48059 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65694906 65699241 49117 53452 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65699153 65700398 54212 55457 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65700587 65716582 55555 73123 NC_000014.9 scf142 99.58 True fake: scaffold gap size wrong estimation (local) 65717579 65728046 76053 86520 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65727950 65730496 87191 89734 NC_000014.9 scf142 99.88 True fake: scaffold gap size wrong estimation (local) 65730589 65741522 90595 101528 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65741452 65763096 102247 124641 NC_000014.9 scf142 99.82 True fake: scaffold gap size wrong estimation (local) 65762997 65769680 125339 132022 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65769590 65774805 132729 137945 NC_000014.9 scf142 99.98 True fake: scaffold gap size wrong estimation (local) 65775025 65777328 138905 141208 NC_000014.9 scf142 100.0 True fake: scaffold gap size wrong estimation (local) 65777230 65788229 141868 152867 NC_000014.9 scf142 99.93 True fake: scaffold gap size wrong estimation (local) 65788132 65805872 153517 173537 NC_000014.9 scf142 99.37 True fake: scaffold gap size wrong estimation (local) 65805779 65817670 174200 186872 NC_000014.9 scf142 99.02 True fake: scaffold gap size wrong estimation (local) 65818794 65830481 188712 200415 NC_000014.9 scf142 99.79 True fake: scaffold gap size wrong estimation (local) 65830435 65832152 201200 202917 NC_000014.9 scf142 99.88 True fake: scaffold gap size wrong estimation (local) 65832055 65834051 203753 205749 NC_000014.9 scf142 99.8 True fake: scaffold gap size wrong estimation (local) 65833952 65848727 206499 221272 NC_000014.9 scf142 99.91 True fake: scaffold gap size wrong estimation (local) 65848852 65854987 222125 228260 NC_000014.9 scf142 99.85 True CONTIG scf142 228260 correct 68093659 68095734 1 2076 NC_000014.9 scf143 100.0 True fake: scaffold gap size wrong estimation (local) 68095976 68102668 3139 9831 NC_000014.9 scf143 99.99 True fake: scaffold gap size wrong estimation (local) 68102573 68114975 10486 22888 NC_000014.9 scf143 100.0 True fake: scaffold gap size wrong estimation (local) 68115474 68119405 24122 28053 NC_000014.9 scf143 100.0 True fake: scaffold gap size wrong estimation (local) 68120262 68123235 29648 32620 NC_000014.9 scf143 99.97 True fake: scaffold gap size wrong estimation (local) 68123192 68133702 33360 45470 NC_000014.9 scf143 99.48 True fake: scaffold gap size wrong estimation (local) 68133604 68151632 46187 65074 NC_000014.9 scf143 95.36 True local misassembly 68151764 68156488 65099 70693 NC_000014.9 scf143 99.37 True fake: scaffold gap size wrong estimation (local) 68156414 68159572 71451 74614 NC_000014.9 scf143 99.65 True fake: scaffold gap size wrong estimation (local) 68159511 68171325 75304 87857 NC_000014.9 scf143 99.8 True fake: scaffold gap size wrong estimation (local) 68171417 68172066 88105 88773 NC_000014.9 scf143 97.01 True fake: scaffold gap size wrong estimation (local) 68171969 68196199 89664 114729 NC_000014.9 scf143 99.7 True fake: scaffold gap size wrong estimation (local) 68196146 68202661 115400 121910 NC_000014.9 scf143 99.86 True fake: scaffold gap size wrong estimation (local) 68202760 68206914 122755 126909 NC_000014.9 scf143 100.0 True fake: scaffold gap size wrong estimation (local) 68206857 68210033 127737 130757 NC_000014.9 scf143 95.06 True fake: scaffold gap size wrong estimation (local) 68210118 68224863 131652 147162 NC_000014.9 scf143 99.99 True fake: scaffold gap size wrong estimation (local) 68224770 68235505 147822 158557 NC_000014.9 scf143 99.99 True fake: scaffold gap size wrong estimation (local) 68235710 68241497 159604 166180 NC_000014.9 scf143 99.98 True fake: scaffold gap size wrong estimation (local) 68241413 68253065 166849 178501 NC_000014.9 scf143 99.97 True fake: scaffold gap size wrong estimation (local) 68252986 68260319 179204 187258 NC_000014.9 scf143 99.81 True fake: scaffold gap size wrong estimation (local) 68260299 68265802 188229 193732 NC_000014.9 scf143 99.95 True fake: scaffold gap size wrong estimation (local) 68265707 68272641 194390 201324 NC_000014.9 scf143 99.99 True fake: scaffold gap size wrong estimation (local) 68272737 68282135 202197 211590 NC_000014.9 scf143 99.95 True fake: scaffold gap size wrong estimation (local) 68282037 68303242 212247 234174 NC_000014.9 scf143 99.61 True fake: scaffold gap size wrong estimation (local) 68303369 68311785 235483 244567 NC_000014.9 scf143 96.66 True fake: scaffold gap size wrong estimation (local) 68311700 68322059 245425 256549 NC_000014.9 scf143 99.71 True fake: scaffold gap size wrong estimation (local) 68321967 68334910 257245 271761 NC_000014.9 scf143 98.96 True fake: scaffold gap size wrong estimation (local) 68335315 68339198 272904 276789 NC_000014.9 scf143 99.77 True fake: scaffold gap size wrong estimation (local) 68339106 68344463 277449 282803 NC_000014.9 scf143 99.74 True fake: scaffold gap size wrong estimation (local) 68344843 68356227 283966 296978 NC_000014.9 scf143 99.27 True fake: scaffold gap size wrong estimation (local) 68356983 68362729 298502 304248 NC_000014.9 scf143 99.95 True fake: scaffold gap size wrong estimation (local) 68362812 68371054 305064 313306 NC_000014.9 scf143 99.92 True fake: scaffold gap size wrong estimation (local) 68371245 68391239 314246 335719 NC_000014.9 scf143 99.66 True fake: scaffold gap size wrong estimation (local) 68391151 68399285 336392 344527 NC_000014.9 scf143 99.85 True fake: scaffold gap size wrong estimation (local) 68399451 68414866 345487 360902 NC_000014.9 scf143 99.91 True fake: scaffold gap size wrong estimation (local) 68415032 68425978 361843 373531 NC_000014.9 scf143 99.88 True fake: scaffold gap size wrong estimation (local) 68425937 68428730 374259 377056 NC_000014.9 scf143 99.75 True CONTIG scf143 377056 correct 78562406 78568984 1 6579 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78569434 78579623 7777 18771 NC_000014.9 scf144 99.68 True fake: scaffold gap size wrong estimation (local) 78579536 78601574 19509 41547 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78601691 78610134 42385 50830 NC_000014.9 scf144 99.93 True fake: scaffold gap size wrong estimation (local) 78610037 78613674 51478 55115 NC_000014.9 scf144 99.97 True fake: scaffold gap size wrong estimation (local) 78613586 78623691 55862 66740 NC_000014.9 scf144 98.61 True fake: scaffold gap size wrong estimation (local) 78623597 78630613 67439 75239 NC_000014.9 scf144 99.18 True fake: scaffold gap size wrong estimation (local) 78630826 78632031 76217 77422 NC_000014.9 scf144 99.75 True local misassembly 78632170 78633075 77423 78328 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78633246 78656879 79436 105459 NC_000014.9 scf144 99.8 True fake: scaffold gap size wrong estimation (local) 78657082 78660342 106401 109662 NC_000014.9 scf144 99.88 True fake: scaffold gap size wrong estimation (local) 78660254 78662140 110382 112268 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78662043 78667965 112990 118912 NC_000014.9 scf144 99.97 True fake: scaffold gap size wrong estimation (local) 78667902 78675978 119616 127693 NC_000014.9 scf144 99.81 True fake: scaffold gap size wrong estimation (local) 78675908 78678414 128418 130924 NC_000014.9 scf144 99.84 True fake: scaffold gap size wrong estimation (local) 78678323 78682079 131639 135395 NC_000014.9 scf144 99.89 True fake: scaffold gap size wrong estimation (local) 78682034 78685822 136132 139919 NC_000014.9 scf144 99.82 True fake: scaffold gap size wrong estimation (local) 78685727 78692901 140635 147809 NC_000014.9 scf144 99.93 True fake: scaffold gap size wrong estimation (local) 78692808 78693750 149577 150515 NC_000014.9 scf144 99.58 True fake: scaffold gap size wrong estimation (local) 78693683 78700918 151377 158612 NC_000014.9 scf144 99.93 True fake: scaffold gap size wrong estimation (local) 78701007 78702423 159424 160836 NC_000014.9 scf144 99.51 True fake: scaffold gap size wrong estimation (local) 78702533 78706988 161768 166223 NC_000014.9 scf144 99.75 True fake: scaffold gap size wrong estimation (local) 78706899 78710879 166950 170852 NC_000014.9 scf144 97.74 True fake: scaffold gap size wrong estimation (local) 78710785 78711434 172035 172684 NC_000014.9 scf144 99.85 True local misassembly 78711952 78712764 172772 173584 NC_000014.9 scf144 99.88 True fake: scaffold gap size wrong estimation (local) 78712765 78716766 175018 179019 NC_000014.9 scf144 99.83 True fake: scaffold gap size wrong estimation (local) 78716667 78719462 179597 182395 NC_000014.9 scf144 99.82 True fake: scaffold gap size wrong estimation (local) 78719371 78727753 183120 191446 NC_000014.9 scf144 97.2 True fake: scaffold gap size wrong estimation (local) 78727662 78731657 192188 196183 NC_000014.9 scf144 99.9 True fake: scaffold gap size wrong estimation (local) 78731562 78736240 196849 202380 NC_000014.9 scf144 97.78 True fake: scaffold gap size wrong estimation (local) 78736147 78744350 203070 211275 NC_000014.9 scf144 99.9 True fake: scaffold gap size wrong estimation (local) 78744256 78747840 211895 215477 NC_000014.9 scf144 99.89 True fake: scaffold gap size wrong estimation (local) 78747750 78755256 216160 223667 NC_000014.9 scf144 99.96 True fake: scaffold gap size wrong estimation (local) 78755191 78756664 224358 225830 NC_000014.9 scf144 99.8 True fake: scaffold gap size wrong estimation (local) 78756576 78778775 226526 250250 NC_000014.9 scf144 99.56 True fake: scaffold gap size wrong estimation (local) 78778679 78784158 250945 256420 NC_000014.9 scf144 99.93 True fake: scaffold gap size wrong estimation (local) 78784071 78831401 257111 308738 NC_000014.9 scf144 99.28 True fake: scaffold gap size wrong estimation (local) 78831306 78842721 309403 320827 NC_000014.9 scf144 99.77 True fake: scaffold gap size wrong estimation (local) 78842896 78853324 321866 332885 NC_000014.9 scf144 97.7 True fake: scaffold gap size wrong estimation (local) 78853226 78866817 333563 347154 NC_000014.9 scf144 99.99 True fake: scaffold gap size wrong estimation (local) 78866968 78868665 348118 349815 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78868620 78880034 350668 363581 NC_000014.9 scf144 99.74 True fake: scaffold gap size wrong estimation (local) 78880240 78912019 364577 397140 NC_000014.9 scf144 99.8 True fake: scaffold gap size wrong estimation (local) 78912108 78913296 398014 399202 NC_000014.9 scf144 99.92 True fake: scaffold gap size wrong estimation (local) 78913530 78924228 399357 412986 NC_000014.9 scf144 99.53 True fake: scaffold gap size wrong estimation (local) 78924130 78926643 413662 416175 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78926995 78928426 417382 418813 NC_000014.9 scf144 99.93 True fake: scaffold gap size wrong estimation (local) 78928749 78934743 419858 425852 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78934826 78938969 426719 430861 NC_000014.9 scf144 99.95 True fake: scaffold gap size wrong estimation (local) 78939067 78948748 431695 442106 NC_000014.9 scf144 99.98 True fake: scaffold gap size wrong estimation (local) 78948663 78954547 442767 448651 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78954708 78971751 449545 468085 NC_000014.9 scf144 99.96 True fake: scaffold gap size wrong estimation (local) 78971654 78983730 468711 480787 NC_000014.9 scf144 100.0 True fake: scaffold gap size wrong estimation (local) 78983857 78993861 481675 492382 NC_000014.9 scf144 99.96 True fake: scaffold gap size wrong estimation (local) 78994091 79007887 493398 507878 NC_000014.9 scf144 99.99 True fake: scaffold gap size wrong estimation (local) 79007811 79018084 508582 519624 NC_000014.9 scf144 99.51 True fake: scaffold gap size wrong estimation (local) 79018268 79020160 520568 522458 NC_000014.9 scf144 99.84 True fake: scaffold gap size wrong estimation (local) 79020501 79023124 523486 526113 NC_000014.9 scf144 99.85 True fake: scaffold gap size wrong estimation (local) 79023087 79026971 526825 530714 NC_000014.9 scf144 99.74 True fake: scaffold gap size wrong estimation (local) 79026981 79048835 531427 555790 NC_000014.9 scf144 98.15 True fake: scaffold gap size wrong estimation (local) 79049053 79054090 556687 561722 NC_000014.9 scf144 99.88 True fake: scaffold gap size wrong estimation (local) 79054218 79059273 562620 567675 NC_000014.9 scf144 99.76 True fake: scaffold gap size wrong estimation (local) 79059432 79079958 568591 589868 NC_000014.9 scf144 99.75 True fake: scaffold gap size wrong estimation (local) 79079872 79082479 590566 593180 NC_000014.9 scf144 99.54 True fake: scaffold gap size wrong estimation (local) 79082392 79114687 593842 627704 NC_000014.9 scf144 97.08 True fake: scaffold gap size wrong estimation (local) 79115326 79126284 629080 640039 NC_000014.9 scf144 99.9 True CONTIG scf144 640039 correct 25369581 25382321 4 12757 NC_000014.9 scf145 99.8 True fake: scaffold gap size wrong estimation (local) 25382237 25388679 13416 19858 NC_000014.9 scf145 99.91 True fake: scaffold gap size wrong estimation (local) 25388583 25391315 20557 23289 NC_000014.9 scf145 99.96 True fake: scaffold gap size wrong estimation (local) 25391223 25404617 24070 38297 NC_000014.9 scf145 99.93 True fake: scaffold gap size wrong estimation (local) 25405321 25406737 39744 41160 NC_000014.9 scf145 99.86 True fake: scaffold gap size wrong estimation (local) 25406642 25408252 42316 43926 NC_000014.9 scf145 99.88 True local misassembly 25408835 25409893 43927 44985 NC_000014.9 scf145 99.91 True fake: scaffold gap size wrong estimation (local) 25410129 25419564 46463 56010 NC_000014.9 scf145 97.75 True fake: scaffold gap size wrong estimation (local) 25419903 25421110 57193 58400 NC_000014.9 scf145 99.5 True local misassembly 25421336 25422931 58401 59996 NC_000014.9 scf145 99.81 True fake: scaffold gap size wrong estimation (local) 25422833 25423874 60807 61848 NC_000014.9 scf145 98.85 True fake: scaffold gap size wrong estimation (local) 25424800 25425542 62584 63326 NC_000014.9 scf145 99.6 True fake: scaffold gap size wrong estimation (local) 25425565 25432709 64190 71348 NC_000014.9 scf145 99.43 True fake: scaffold gap size wrong estimation (local) 25432615 25458091 72102 98082 NC_000014.9 scf145 97.94 True fake: scaffold gap size wrong estimation (local) 25458044 25474089 98731 116286 NC_000014.9 scf145 99.72 True fake: scaffold gap size wrong estimation (local) 25474874 25493322 117827 136274 NC_000014.9 scf145 99.89 True CONTIG scf145 136274 correct 29481412 29484916 1 4453 NC_000014.9 scf146 99.54 True fake: scaffold gap size wrong estimation (local) 29485023 29504899 5316 26010 NC_000014.9 scf146 99.6 True fake: scaffold gap size wrong estimation (local) 29504817 29515087 26660 37732 NC_000014.9 scf146 99.79 True fake: scaffold gap size wrong estimation (local) 29514995 29526587 38456 51469 NC_000014.9 scf146 98.08 True fake: scaffold gap size wrong estimation (local) 29526846 29534988 52349 60483 NC_000014.9 scf146 99.68 True fake: scaffold gap size wrong estimation (local) 29534926 29535501 61275 61850 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29535855 29538667 62112 64924 NC_000014.9 scf146 99.96 True fake: scaffold gap size wrong estimation (local) 29538576 29544465 65653 71546 NC_000014.9 scf146 99.83 True fake: scaffold gap size wrong estimation (local) 29544548 29553878 72446 83317 NC_000014.9 scf146 99.42 True fake: scaffold gap size wrong estimation (local) 29554028 29560271 84161 91205 NC_000014.9 scf146 98.3 True fake: scaffold gap size wrong estimation (local) 29560176 29561784 91960 93568 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29561933 29573856 94602 107280 NC_000014.9 scf146 99.62 True fake: scaffold gap size wrong estimation (local) 29573757 29591094 107918 126798 NC_000014.9 scf146 99.72 True fake: scaffold gap size wrong estimation (local) 29590999 29596534 127500 133035 NC_000014.9 scf146 99.91 True fake: scaffold gap size wrong estimation (local) 29596444 29619958 133679 158650 NC_000014.9 scf146 98.48 True fake: scaffold gap size wrong estimation (local) 29621206 29622388 160765 161947 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29622547 29634840 162791 176634 NC_000014.9 scf146 99.41 True fake: scaffold gap size wrong estimation (local) 29636048 29639488 178599 182039 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29639387 29652008 182732 197626 NC_000014.9 scf146 98.65 True fake: scaffold gap size wrong estimation (local) 29651911 29654301 198326 200716 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29654208 29657638 201444 204874 NC_000014.9 scf146 99.94 True fake: scaffold gap size wrong estimation (local) 29657722 29675644 205723 225108 NC_000014.9 scf146 99.99 True fake: scaffold gap size wrong estimation (local) 29676476 29677690 226790 228004 NC_000014.9 scf146 99.84 True fake: scaffold gap size wrong estimation (local) 29677662 29682270 231894 237685 NC_000014.9 scf146 99.44 True fake: scaffold gap size wrong estimation (local) 29682173 29693465 238412 251574 NC_000014.9 scf146 98.16 True fake: scaffold gap size wrong estimation (local) 29693371 29695124 252306 254059 NC_000014.9 scf146 99.89 True local misassembly 29695345 29696240 254060 254955 NC_000014.9 scf146 99.67 True fake: scaffold gap size wrong estimation (local) 29696166 29720594 255805 280875 NC_000014.9 scf146 99.68 True fake: scaffold gap size wrong estimation (local) 29720495 29723753 281526 284786 NC_000014.9 scf146 99.91 True fake: scaffold gap size wrong estimation (local) 29723671 29726990 285535 288854 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29728030 29732107 290615 294692 NC_000014.9 scf146 99.95 True fake: scaffold gap size wrong estimation (local) 29732030 29733235 295387 296592 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29733197 29734051 297319 298212 NC_000014.9 scf146 95.3 True fake: scaffold gap size wrong estimation (local) 29734273 29737134 298412 301273 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29737333 29740899 302227 305793 NC_000014.9 scf146 99.97 True fake: scaffold gap size wrong estimation (local) 29740806 29746550 306416 312160 NC_000014.9 scf146 99.98 True fake: scaffold gap size wrong estimation (local) 29746458 29760647 312791 326979 NC_000014.9 scf146 99.97 True fake: scaffold gap size wrong estimation (local) 29760554 29763029 327718 330193 NC_000014.9 scf146 100.0 True fake: scaffold gap size wrong estimation (local) 29763126 29776271 331053 344229 NC_000014.9 scf146 99.75 True fake: scaffold gap size wrong estimation (local) 29776177 29776895 344988 345719 NC_000014.9 scf146 97.95 True CONTIG scf146 345719 correct 80489270 80513768 11 26119 NC_000014.9 scf147 99.52 True fake: scaffold gap size wrong estimation (local) 80513674 80516672 26773 29771 NC_000014.9 scf147 99.97 True fake: scaffold gap size wrong estimation (local) 80516494 80534880 30950 50100 NC_000014.9 scf147 96.12 True fake: scaffold gap size wrong estimation (local) 80534820 80539253 50737 55297 NC_000014.9 scf147 97.13 True fake: scaffold gap size wrong estimation (local) 80539154 80547928 56141 65847 NC_000014.9 scf147 96.58 True fake: scaffold gap size wrong estimation (local) 80548030 80550884 66726 69580 NC_000014.9 scf147 99.93 True fake: scaffold gap size wrong estimation (local) 80550814 80560295 70225 80445 NC_000014.9 scf147 99.77 True fake: scaffold gap size wrong estimation (local) 80560201 80561902 81858 83593 NC_000014.9 scf147 97.98 True fake: scaffold gap size wrong estimation (local) 80562096 80563539 84850 86296 NC_000014.9 scf147 99.1 True fake: scaffold gap size wrong estimation (local) 80563787 80570212 87546 94005 NC_000014.9 scf147 99.26 True fake: scaffold gap size wrong estimation (local) 80570118 80577545 94725 102903 NC_000014.9 scf147 99.54 True fake: scaffold gap size wrong estimation (local) 80577484 80584219 103595 110332 NC_000014.9 scf147 99.76 True fake: scaffold gap size wrong estimation (local) 80584165 80590903 111013 117751 NC_000014.9 scf147 99.93 True fake: scaffold gap size wrong estimation (local) 80592537 80593138 120196 120797 NC_000014.9 scf147 99.83 True CONTIG scf147 120801 correct 45485003 45485895 1 893 NC_000014.9 scf148 99.78 True local misassembly 45486225 45487311 894 1980 NC_000014.9 scf148 99.72 True fake: scaffold gap size wrong estimation (local) 45487815 45493287 3404 8876 NC_000014.9 scf148 99.91 True fake: scaffold gap size wrong estimation (local) 45493191 45495732 9595 12123 NC_000014.9 scf148 99.45 True fake: scaffold gap size wrong estimation (local) 45495999 45496596 13412 14009 NC_000014.9 scf148 100.0 True fake: scaffold gap size wrong estimation (local) 45499039 45506559 17445 24841 NC_000014.9 scf148 97.4 True fake: scaffold gap size wrong estimation (local) 45506797 45517389 25908 37288 NC_000014.9 scf148 99.75 True fake: scaffold gap size wrong estimation (local) 45517472 45520820 38199 41543 NC_000014.9 scf148 99.85 True fake: scaffold gap size wrong estimation (local) 45520769 45539889 42261 61282 NC_000014.9 scf148 99.46 True fake: scaffold gap size wrong estimation (local) 45539806 45543824 62003 66021 NC_000014.9 scf148 99.98 True fake: scaffold gap size wrong estimation (local) 45544026 45545807 67084 68865 NC_000014.9 scf148 100.0 True CONTIG scf148 68865 correct 66586659 66589728 1033 4102 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66589678 66605102 4906 21834 NC_000014.9 scf149 97.62 True fake: scaffold gap size wrong estimation (local) 66605003 66615268 22515 32780 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66615180 66621091 33494 40236 NC_000014.9 scf149 99.97 True fake: scaffold gap size wrong estimation (local) 66621531 66623782 41461 43711 NC_000014.9 scf149 99.96 True fake: scaffold gap size wrong estimation (local) 66623698 66630752 44472 51526 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66631291 66632538 52864 54109 NC_000014.9 scf149 99.84 True fake: scaffold gap size wrong estimation (local) 66632492 66645663 56445 69616 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66645567 66649204 70384 73882 NC_000014.9 scf149 96.18 True fake: scaffold gap size wrong estimation (local) 66649112 66654207 74602 79697 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66654109 66663980 80273 90143 NC_000014.9 scf149 99.97 True fake: scaffold gap size wrong estimation (local) 66663881 66665390 90967 92474 NC_000014.9 scf149 99.87 True fake: scaffold gap size wrong estimation (local) 66666179 66674234 94044 102877 NC_000014.9 scf149 99.51 True fake: scaffold gap size wrong estimation (local) 66674169 66683323 103496 112650 NC_000014.9 scf149 99.98 True fake: scaffold gap size wrong estimation (local) 66683720 66685163 114038 115496 NC_000014.9 scf149 98.97 True fake: scaffold gap size wrong estimation (local) 66687014 66687527 117941 118454 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66687486 66704116 120665 138062 NC_000014.9 scf149 99.39 True fake: scaffold gap size wrong estimation (local) 66704019 66707398 138699 142078 NC_000014.9 scf149 99.97 True fake: scaffold gap size wrong estimation (local) 66707307 66711677 142740 147110 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66712135 66714082 148374 150385 NC_000014.9 scf149 96.82 True fake: scaffold gap size wrong estimation (local) 66714003 66718222 151131 155350 NC_000014.9 scf149 99.98 True fake: scaffold gap size wrong estimation (local) 66718174 66727778 156043 166386 NC_000014.9 scf149 98.76 True fake: scaffold gap size wrong estimation (local) 66727689 66732707 166961 171979 NC_000014.9 scf149 99.96 True fake: scaffold gap size wrong estimation (local) 66732635 66739288 172639 179292 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66739403 66742832 180128 183557 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66742929 66763329 184506 205572 NC_000014.9 scf149 99.4 True fake: scaffold gap size wrong estimation (local) 66763554 66773368 206663 217236 NC_000014.9 scf149 99.99 True fake: scaffold gap size wrong estimation (local) 66773503 66774064 218319 218893 NC_000014.9 scf149 97.05 True fake: scaffold gap size wrong estimation (local) 66774208 66777190 220355 223336 NC_000014.9 scf149 99.97 True fake: scaffold gap size wrong estimation (local) 66778214 66807318 225232 255751 NC_000014.9 scf149 98.24 True fake: scaffold gap size wrong estimation (local) 66807231 66808783 256477 258029 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66808691 66818748 258745 268802 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66818649 66823086 269455 274217 NC_000014.9 scf149 97.86 True fake: scaffold gap size wrong estimation (local) 66823021 66827180 275180 279339 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66827090 66829102 280079 282091 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66829258 66831937 283059 285738 NC_000014.9 scf149 100.0 True fake: scaffold gap size wrong estimation (local) 66831841 66834579 286405 289143 NC_000014.9 scf149 100.0 True CONTIG scf149 289143 correct 45608259 45621255 1 12997 NC_000014.9 scf150 99.92 True fake: scaffold gap size wrong estimation (local) 45621173 45627474 13654 19955 NC_000014.9 scf150 99.95 True fake: scaffold gap size wrong estimation (local) 45627401 45635010 20702 28901 NC_000014.9 scf150 97.53 True fake: scaffold gap size wrong estimation (local) 45636359 45644887 31231 40583 NC_000014.9 scf150 99.51 True fake: scaffold gap size wrong estimation (local) 45644796 45659742 41294 56244 NC_000014.9 scf150 99.9 True fake: scaffold gap size wrong estimation (local) 45659653 45668418 56896 65661 NC_000014.9 scf150 99.9 True fake: scaffold gap size wrong estimation (local) 45669777 45694044 67756 92721 NC_000014.9 scf150 99.92 True fake: scaffold gap size wrong estimation (local) 45693946 45703884 93333 103276 NC_000014.9 scf150 99.74 True fake: scaffold gap size wrong estimation (local) 45704078 45713557 104242 113732 NC_000014.9 scf150 99.56 True fake: scaffold gap size wrong estimation (local) 45713393 45714035 114410 115052 NC_000014.9 scf150 100.0 True fake: scaffold gap size wrong estimation (local) 45714457 45719627 116607 121777 NC_000014.9 scf150 99.88 True fake: scaffold gap size wrong estimation (local) 45719530 45725539 122445 129321 NC_000014.9 scf150 99.92 True fake: scaffold gap size wrong estimation (local) 45725450 45741457 130042 146049 NC_000014.9 scf150 99.97 True fake: scaffold gap size wrong estimation (local) 45741364 45746127 146695 151458 NC_000014.9 scf150 99.98 True fake: scaffold gap size wrong estimation (local) 45746248 45754360 152296 160947 NC_000014.9 scf150 96.0 True fake: scaffold gap size wrong estimation (local) 45755149 45755666 162150 162667 NC_000014.9 scf150 100.0 True fake: scaffold gap size wrong estimation (local) 45756206 45767035 164164 174997 NC_000014.9 scf150 99.88 True fake: scaffold gap size wrong estimation (local) 45767232 45770007 175944 178672 NC_000014.9 scf150 98.09 True fake: scaffold gap size wrong estimation (local) 45771414 45780270 180753 189909 NC_000014.9 scf150 97.36 True fake: scaffold gap size wrong estimation (local) 45780461 45783451 190595 193584 NC_000014.9 scf150 99.8 True fake: scaffold gap size wrong estimation (local) 45783352 45787845 194214 198707 NC_000014.9 scf150 99.87 True fake: scaffold gap size wrong estimation (local) 45788330 45789266 200639 201575 NC_000014.9 scf150 99.79 True local misassembly 45790083 45793500 201576 204993 NC_000014.9 scf150 99.88 True fake: scaffold gap size wrong estimation (local) 45793501 45794886 205805 207190 NC_000014.9 scf150 100.0 True fake: scaffold gap size wrong estimation (local) 45795685 45796480 207676 208485 NC_000014.9 scf150 98.27 True fake: scaffold gap size wrong estimation (local) 45796388 45818113 210298 232691 NC_000014.9 scf150 99.27 True fake: scaffold gap size wrong estimation (local) 45818688 45823487 234108 238907 NC_000014.9 scf150 100.0 True fake: scaffold gap size wrong estimation (local) 45824446 45833986 240670 250210 NC_000014.9 scf150 99.97 True fake: scaffold gap size wrong estimation (local) 45835998 45841535 252962 258499 NC_000014.9 scf150 99.98 True fake: scaffold gap size wrong estimation (local) 45842007 45844480 259717 262191 NC_000014.9 scf150 99.92 True fake: scaffold gap size wrong estimation (local) 45845778 45847511 264205 265938 NC_000014.9 scf150 99.88 True fake: scaffold gap size wrong estimation (local) 45847606 45857714 266799 277721 NC_000014.9 scf150 98.99 True fake: scaffold gap size wrong estimation (local) 45857625 45868835 278448 290352 NC_000014.9 scf150 99.35 True fake: scaffold gap size wrong estimation (local) 45868744 45869664 291227 292147 NC_000014.9 scf150 99.67 True fake: scaffold gap size wrong estimation (local) 45870078 45870879 292409 293210 NC_000014.9 scf150 98.88 True fake: scaffold gap size wrong estimation (local) 45870783 45873428 294198 296830 NC_000014.9 scf150 99.09 True fake: scaffold gap size wrong estimation (local) 45873967 45874512 298170 298715 NC_000014.9 scf150 99.82 True indel: indel (> 5bp) 45874538 45875357 298716 299535 NC_000014.9 scf150 99.88 True local misassembly 45875728 45877166 299536 300974 NC_000014.9 scf150 99.65 True fake: scaffold gap size wrong estimation (local) 45877067 45879382 301912 304226 NC_000014.9 scf150 99.61 True fake: scaffold gap size wrong estimation (local) 45879864 45881744 305507 307387 NC_000014.9 scf150 99.73 True fake: scaffold gap size wrong estimation (local) 45882696 45883321 309246 309871 NC_000014.9 scf150 100.0 True CONTIG scf150 309871 correct 26635198 26643177 4 8470 NC_000014.9 scf151 95.52 True fake: scaffold gap size wrong estimation (local) 26643125 26648560 9486 14920 NC_000014.9 scf151 99.83 True fake: scaffold gap size wrong estimation (local) 26648672 26666619 15835 33786 NC_000014.9 scf151 99.84 True fake: scaffold gap size wrong estimation (local) 26666538 26671926 34487 39874 NC_000014.9 scf151 99.81 True fake: scaffold gap size wrong estimation (local) 26672032 26673406 40730 42104 NC_000014.9 scf151 99.93 True CONTIG scf151 42104 correct 61079219 61092374 13921 1 NC_000014.9 scf152 99.81 True fake: scaffold gap size wrong estimation (local) 61061077 61079020 32886 14959 NC_000014.9 scf152 99.79 True CONTIG scf152 32886 correct 51216376 51218449 1 2077 NC_000014.9 scf153 99.61 True fake: scaffold gap size wrong estimation (local) 51218793 51220437 3311 4954 NC_000014.9 scf153 99.76 True fake: scaffold gap size wrong estimation (local) 51220733 51223550 6071 8888 NC_000014.9 scf153 99.86 True fake: scaffold gap size wrong estimation (local) 51223451 51226360 9597 12504 NC_000014.9 scf153 99.62 True fake: scaffold gap size wrong estimation (local) 51226526 51234702 13416 21591 NC_000014.9 scf153 99.8 True fake: scaffold gap size wrong estimation (local) 51234614 51240043 22719 28941 NC_000014.9 scf153 97.29 True fake: scaffold gap size wrong estimation (local) 51240073 51253335 29822 45498 NC_000014.9 scf153 99.82 True fake: scaffold gap size wrong estimation (local) 51253508 51257025 47083 50600 NC_000014.9 scf153 99.89 True local misassembly 51257281 51257800 50601 51120 NC_000014.9 scf153 100.0 True fake: scaffold gap size wrong estimation (local) 51257752 51269680 52128 64901 NC_000014.9 scf153 99.15 True fake: scaffold gap size wrong estimation (local) 51269592 51272958 65571 68937 NC_000014.9 scf153 99.85 True fake: scaffold gap size wrong estimation (local) 51273055 51289584 69807 88756 NC_000014.9 scf153 96.38 True fake: scaffold gap size wrong estimation (local) 51289667 51301259 89632 101224 NC_000014.9 scf153 99.94 True fake: scaffold gap size wrong estimation (local) 51301160 51310787 101864 112205 NC_000014.9 scf153 99.47 True fake: scaffold gap size wrong estimation (local) 51310688 51312325 112824 114461 NC_000014.9 scf153 100.0 True fake: scaffold gap size wrong estimation (local) 51313741 51314529 116613 117401 NC_000014.9 scf153 100.0 True fake: scaffold gap size wrong estimation (local) 51314439 51320529 118219 124303 NC_000014.9 scf153 99.75 True fake: scaffold gap size wrong estimation (local) 51321429 51322861 125945 127377 NC_000014.9 scf153 99.79 True fake: scaffold gap size wrong estimation (local) 51323082 51326733 129796 133447 NC_000014.9 scf153 99.97 True fake: scaffold gap size wrong estimation (local) 51326646 51329666 134117 137131 NC_000014.9 scf153 99.7 True fake: scaffold gap size wrong estimation (local) 51329589 51347458 137821 155691 NC_000014.9 scf153 99.94 True fake: scaffold gap size wrong estimation (local) 51347360 51357884 156410 167791 NC_000014.9 scf153 99.56 True fake: scaffold gap size wrong estimation (local) 51357799 51362511 168469 173181 NC_000014.9 scf153 99.94 True fake: scaffold gap size wrong estimation (local) 51362616 51366834 174065 178637 NC_000014.9 scf153 97.23 True fake: scaffold gap size wrong estimation (local) 51367118 51374154 179910 186951 NC_000014.9 scf153 99.83 True fake: scaffold gap size wrong estimation (local) 51374058 51376617 187627 190185 NC_000014.9 scf153 99.88 True fake: scaffold gap size wrong estimation (local) 51377005 51377569 191650 192214 NC_000014.9 scf153 100.0 True local misassembly 51377824 51379087 192215 193478 NC_000014.9 scf153 100.0 True fake: scaffold gap size wrong estimation (local) 51379026 51385863 194538 201375 NC_000014.9 scf153 99.87 True fake: scaffold gap size wrong estimation (local) 51386044 51393800 202327 210802 NC_000014.9 scf153 99.51 True fake: scaffold gap size wrong estimation (local) 51393707 51402624 211521 220439 NC_000014.9 scf153 99.92 True fake: scaffold gap size wrong estimation (local) 51402972 51406097 221559 224684 NC_000014.9 scf153 99.87 True fake: scaffold gap size wrong estimation (local) 51406001 51409945 225328 229270 NC_000014.9 scf153 99.85 True fake: scaffold gap size wrong estimation (local) 51409850 51412647 229929 232726 NC_000014.9 scf153 99.89 True fake: scaffold gap size wrong estimation (local) 51412908 51413556 233796 234445 NC_000014.9 scf153 99.69 True CONTIG scf153 234445 correct 32511464 32518738 9354 2080 NC_000014.9 scf154 99.88 True fake: scaffold gap size wrong estimation (local) 32510266 32511561 11345 10087 NC_000014.9 scf154 96.69 True fake: scaffold gap size wrong estimation (local) 32504182 32510363 18201 12019 NC_000014.9 scf154 99.63 True fake: scaffold gap size wrong estimation (local) 32488176 32504277 35740 18891 NC_000014.9 scf154 99.86 True fake: scaffold gap size wrong estimation (local) 32486220 32487996 38476 36700 NC_000014.9 scf154 99.94 True fake: scaffold gap size wrong estimation (local) 32483981 32484848 41436 40569 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32480195 32484062 47222 42274 NC_000014.9 scf154 98.1 True fake: scaffold gap size wrong estimation (local) 32477494 32480257 50689 47926 NC_000014.9 scf154 99.75 True fake: scaffold gap size wrong estimation (local) 32465704 32477593 63295 51517 NC_000014.9 scf154 95.85 True fake: scaffold gap size wrong estimation (local) 32464532 32465188 65097 64441 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32453810 32464261 77807 65505 NC_000014.9 scf154 99.59 True fake: scaffold gap size wrong estimation (local) 32449452 32453595 82057 77924 NC_000014.9 scf154 99.59 True fake: scaffold gap size wrong estimation (local) 32431105 32449537 102775 82756 NC_000014.9 scf154 99.79 True fake: scaffold gap size wrong estimation (local) 32406303 32430931 129761 103634 NC_000014.9 scf154 99.47 True fake: scaffold gap size wrong estimation (local) 32405700 32406397 131241 130544 NC_000014.9 scf154 100.0 True indel: indel (<= 5bp) 32404725 32405699 132220 131246 NC_000014.9 scf154 99.9 True local misassembly 32402893 32404513 133841 132221 NC_000014.9 scf154 99.88 True fake: scaffold gap size wrong estimation (local) 32397392 32402937 140185 134634 NC_000014.9 scf154 99.46 True fake: scaffold gap size wrong estimation (local) 32395439 32397451 143031 140984 NC_000014.9 scf154 98.1 True fake: scaffold gap size wrong estimation (local) 32388339 32395533 150938 143744 NC_000014.9 scf154 99.83 True fake: scaffold gap size wrong estimation (local) 32386633 32388433 153437 151637 NC_000014.9 scf154 99.89 True fake: scaffold gap size wrong estimation (local) 32383092 32386676 159073 155448 NC_000014.9 scf154 98.62 True fake: scaffold gap size wrong estimation (local) 32377429 32383190 166388 159825 NC_000014.9 scf154 99.81 True fake: scaffold gap size wrong estimation (local) 32373400 32377526 171172 167046 NC_000014.9 scf154 99.85 True fake: scaffold gap size wrong estimation (local) 32361839 32373497 183683 171844 NC_000014.9 scf154 99.08 True fake: scaffold gap size wrong estimation (local) 32356649 32361934 189864 184330 NC_000014.9 scf154 97.41 True fake: scaffold gap size wrong estimation (local) 32354196 32356747 193162 190611 NC_000014.9 scf154 99.96 True fake: scaffold gap size wrong estimation (local) 32348508 32353450 200453 194735 NC_000014.9 scf154 96.71 True fake: scaffold gap size wrong estimation (local) 32347787 32348412 202241 201616 NC_000014.9 scf154 99.36 True local misassembly 32346711 32347415 202946 202242 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32343527 32346656 207498 204252 NC_000014.9 scf154 97.05 True fake: scaffold gap size wrong estimation (local) 32337666 32343619 214373 208420 NC_000014.9 scf154 99.98 True fake: scaffold gap size wrong estimation (local) 32326235 32337757 227329 215035 NC_000014.9 scf154 99.79 True fake: scaffold gap size wrong estimation (local) 32321604 32326297 232693 228000 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32320176 32321699 234974 233451 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32310365 32319460 245600 236505 NC_000014.9 scf154 99.96 True fake: scaffold gap size wrong estimation (local) 32297547 32310439 259220 246330 NC_000014.9 scf154 99.98 True fake: scaffold gap size wrong estimation (local) 32295162 32297103 262339 260398 NC_000014.9 scf154 99.95 True fake: scaffold gap size wrong estimation (local) 32292758 32295259 265640 263139 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32290703 32292138 268579 267146 NC_000014.9 scf154 99.86 True fake: scaffold gap size wrong estimation (local) 32282999 32290799 277918 269354 NC_000014.9 scf154 99.96 True fake: scaffold gap size wrong estimation (local) 32280844 32283096 280868 278616 NC_000014.9 scf154 99.96 True local misassembly 32279805 32280567 281631 280869 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32277421 32279807 284986 282600 NC_000014.9 scf154 100.0 True local misassembly 32276153 32276932 285766 284987 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32267816 32276091 296631 288356 NC_000014.9 scf154 100.0 True fake: scaffold gap size wrong estimation (local) 32258150 32267915 307840 297298 NC_000014.9 scf154 99.99 True fake: scaffold gap size wrong estimation (local) 32253381 32258043 313336 308675 NC_000014.9 scf154 99.98 True fake: scaffold gap size wrong estimation (local) 32240355 32253476 327098 313977 NC_000014.9 scf154 100.0 True CONTIG scf154 327098 correct 34007246 34015399 8016 14 NC_000014.9 scf155 97.55 True fake: scaffold gap size wrong estimation (local) 33999357 34007330 16737 8767 NC_000014.9 scf155 99.8 True fake: scaffold gap size wrong estimation (local) 33986258 33999453 31361 17424 NC_000014.9 scf155 99.87 True fake: scaffold gap size wrong estimation (local) 33985006 33986074 33449 32381 NC_000014.9 scf155 99.91 True fake: scaffold gap size wrong estimation (local) 33982464 33983888 37009 35585 NC_000014.9 scf155 99.86 True fake: scaffold gap size wrong estimation (local) 33981378 33982335 38594 37624 NC_000014.9 scf155 98.66 True fake: scaffold gap size wrong estimation (local) 33976397 33981472 44485 39380 NC_000014.9 scf155 99.12 True fake: scaffold gap size wrong estimation (local) 33975770 33976462 45886 45194 NC_000014.9 scf155 99.86 True indel: indel (<= 5bp) 33974558 33975769 47099 45888 NC_000014.9 scf155 99.75 True local misassembly 33973226 33974277 48180 47129 NC_000014.9 scf155 99.62 True fake: scaffold gap size wrong estimation (local) 33968474 33973318 53856 49013 NC_000014.9 scf155 99.83 True fake: scaffold gap size wrong estimation (local) 33965165 33968545 57912 54524 NC_000014.9 scf155 99.44 True fake: scaffold gap size wrong estimation (local) 33963607 33965261 60624 58969 NC_000014.9 scf155 99.76 True fake: scaffold gap size wrong estimation (local) 33961454 33962834 63637 62257 NC_000014.9 scf155 99.78 True fake: scaffold gap size wrong estimation (local) 33952234 33961272 74487 64662 NC_000014.9 scf155 99.24 True fake: scaffold gap size wrong estimation (local) 33944316 33952288 83950 75236 NC_000014.9 scf155 99.75 True fake: scaffold gap size wrong estimation (local) 33935980 33944211 93937 84889 NC_000014.9 scf155 99.43 True fake: scaffold gap size wrong estimation (local) 33927131 33936068 103526 94584 NC_000014.9 scf155 99.58 True fake: scaffold gap size wrong estimation (local) 33922667 33927192 108765 104234 NC_000014.9 scf155 99.74 True fake: scaffold gap size wrong estimation (local) 33920245 33922753 111983 109475 NC_000014.9 scf155 99.8 True fake: scaffold gap size wrong estimation (local) 33914105 33920333 118917 112689 NC_000014.9 scf155 100.0 True fake: scaffold gap size wrong estimation (local) 33913487 33914131 121122 120478 NC_000014.9 scf155 100.0 True fake: scaffold gap size wrong estimation (local) 33910006 33913555 125478 121929 NC_000014.9 scf155 99.97 True fake: scaffold gap size wrong estimation (local) 33898944 33910105 137301 126146 NC_000014.9 scf155 99.95 True fake: scaffold gap size wrong estimation (local) 33896302 33898723 140768 138377 NC_000014.9 scf155 98.76 True fake: scaffold gap size wrong estimation (local) 33893637 33896086 144138 141802 NC_000014.9 scf155 95.39 True fake: scaffold gap size wrong estimation (local) 33870068 33893656 169244 144918 NC_000014.9 scf155 99.59 True fake: scaffold gap size wrong estimation (local) 33854428 33870148 185668 169948 NC_000014.9 scf155 99.99 True fake: scaffold gap size wrong estimation (local) 33850499 33853648 190412 187263 NC_000014.9 scf155 100.0 True fake: scaffold gap size wrong estimation (local) 33838821 33850066 203626 191615 NC_000014.9 scf155 100.0 True fake: scaffold gap size wrong estimation (local) 33832010 33838919 211176 204279 NC_000014.9 scf155 99.74 True CONTIG scf155 211176 correct 88126820 88127347 1 528 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88127866 88131162 1863 5159 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88131740 88171186 6476 45927 NC_000014.9 scf156 99.94 True fake: scaffold gap size wrong estimation (local) 88171095 88178769 46774 54448 NC_000014.9 scf156 99.92 True fake: scaffold gap size wrong estimation (local) 88178905 88203539 55455 82757 NC_000014.9 scf156 96.73 True fake: scaffold gap size wrong estimation (local) 88203456 88211861 83597 92765 NC_000014.9 scf156 99.92 True fake: scaffold gap size wrong estimation (local) 88212373 88217781 94160 100346 NC_000014.9 scf156 99.38 True fake: scaffold gap size wrong estimation (local) 88217946 88220234 101310 103598 NC_000014.9 scf156 99.91 True fake: scaffold gap size wrong estimation (local) 88220421 88221218 104202 104999 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88221138 88227433 105947 112242 NC_000014.9 scf156 99.92 True fake: scaffold gap size wrong estimation (local) 88227340 88237952 112916 124341 NC_000014.9 scf156 99.37 True fake: scaffold gap size wrong estimation (local) 88237898 88239790 125093 126985 NC_000014.9 scf156 99.84 True local misassembly 88240058 88241138 126986 128066 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88241051 88251123 128911 140705 NC_000014.9 scf156 97.1 True fake: scaffold gap size wrong estimation (local) 88251029 88253752 141341 144149 NC_000014.9 scf156 96.87 True fake: scaffold gap size wrong estimation (local) 88253657 88256202 145819 148360 NC_000014.9 scf156 99.69 True fake: scaffold gap size wrong estimation (local) 88256106 88258307 149101 151302 NC_000014.9 scf156 99.86 True fake: scaffold gap size wrong estimation (local) 88258874 88260184 152754 154077 NC_000014.9 scf156 98.94 True fake: scaffold gap size wrong estimation (local) 88260101 88267393 154723 162015 NC_000014.9 scf156 99.95 True fake: scaffold gap size wrong estimation (local) 88267818 88278715 163255 174958 NC_000014.9 scf156 98.79 True fake: scaffold gap size wrong estimation (local) 88278634 88279364 175771 176501 NC_000014.9 scf156 99.86 True local misassembly 88279626 88281743 176594 178711 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88281831 88285256 179612 183037 NC_000014.9 scf156 99.97 True fake: scaffold gap size wrong estimation (local) 88285161 88287701 183665 186205 NC_000014.9 scf156 99.96 True fake: scaffold gap size wrong estimation (local) 88287621 88292624 186934 191915 NC_000014.9 scf156 99.48 True fake: scaffold gap size wrong estimation (local) 88292803 88295594 192788 195578 NC_000014.9 scf156 99.86 True fake: scaffold gap size wrong estimation (local) 88295501 88299487 196292 200278 NC_000014.9 scf156 99.95 True fake: scaffold gap size wrong estimation (local) 88299402 88302545 200994 204137 NC_000014.9 scf156 99.81 True fake: scaffold gap size wrong estimation (local) 88302452 88310024 204823 213153 NC_000014.9 scf156 98.73 True fake: scaffold gap size wrong estimation (local) 88310206 88316699 214202 221521 NC_000014.9 scf156 99.59 True fake: scaffold gap size wrong estimation (local) 88316603 88330981 222173 238988 NC_000014.9 scf156 99.77 True fake: scaffold gap size wrong estimation (local) 88330893 88341639 239634 251120 NC_000014.9 scf156 99.62 True fake: scaffold gap size wrong estimation (local) 88341895 88347711 252184 258850 NC_000014.9 scf156 99.36 True fake: scaffold gap size wrong estimation (local) 88347617 88354216 259575 267017 NC_000014.9 scf156 99.94 True fake: scaffold gap size wrong estimation (local) 88354120 88366896 267670 280445 NC_000014.9 scf156 99.95 True fake: scaffold gap size wrong estimation (local) 88366804 88371983 281095 286291 NC_000014.9 scf156 99.62 True fake: scaffold gap size wrong estimation (local) 88371886 88374912 287021 289955 NC_000014.9 scf156 96.96 True fake: scaffold gap size wrong estimation (local) 88374858 88375381 291699 292222 NC_000014.9 scf156 100.0 True local misassembly 88376422 88377186 292223 293004 NC_000014.9 scf156 97.83 True fake: scaffold gap size wrong estimation (local) 88377187 88381713 294934 299460 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88381618 88383075 300145 301602 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88382979 88396935 302409 317100 NC_000014.9 scf156 99.5 True fake: scaffold gap size wrong estimation (local) 88396876 88398026 317798 318948 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88399010 88404528 320674 327553 NC_000014.9 scf156 96.55 True fake: scaffold gap size wrong estimation (local) 88404649 88406721 328824 330896 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88408017 88408963 333018 333964 NC_000014.9 scf156 99.89 True fake: scaffold gap size wrong estimation (local) 88409916 88418793 335976 344861 NC_000014.9 scf156 99.75 True fake: scaffold gap size wrong estimation (local) 88418724 88419625 345582 346483 NC_000014.9 scf156 100.0 True indel: indel (> 5bp) 88419692 88421906 346484 348698 NC_000014.9 scf156 99.82 True fake: scaffold gap size wrong estimation (local) 88421907 88423374 349658 351125 NC_000014.9 scf156 100.0 True fake: scaffold gap size wrong estimation (local) 88423837 88441189 352196 369573 NC_000014.9 scf156 99.8 True fake: scaffold gap size wrong estimation (local) 88441466 88442957 371249 372744 NC_000014.9 scf156 99.67 True CONTIG scf156 372757 correct 36148277 36157448 1 10720 NC_000014.9 scf157 99.29 True fake: scaffold gap size wrong estimation (local) 36158122 36159230 11332 12441 NC_000014.9 scf157 99.73 True fake: scaffold gap size wrong estimation (local) 36159472 36160005 12876 13409 NC_000014.9 scf157 99.81 True fake: scaffold gap size wrong estimation (local) 36160223 36160819 13540 14137 NC_000014.9 scf157 99.67 True fake: scaffold gap size wrong estimation (local) 36160733 36178824 15095 33192 NC_000014.9 scf157 99.58 True fake: scaffold gap size wrong estimation (local) 36178741 36182087 34110 38817 NC_000014.9 scf157 99.08 True fake: scaffold gap size wrong estimation (local) 36182971 36184659 40588 42276 NC_000014.9 scf157 99.7 True CONTIG scf157 42276 correct 54074476 54097348 1 23572 NC_000014.9 scf158 99.47 True fake: scaffold gap size wrong estimation (local) 54097669 54107030 24380 34557 NC_000014.9 scf158 99.64 True fake: scaffold gap size wrong estimation (local) 54106935 54123113 35259 51732 NC_000014.9 scf158 98.85 True fake: scaffold gap size wrong estimation (local) 54123473 54135106 52808 64459 NC_000014.9 scf158 99.43 True fake: scaffold gap size wrong estimation (local) 54135015 54147130 65134 77250 NC_000014.9 scf158 99.74 True fake: scaffold gap size wrong estimation (local) 54147033 54150649 77874 81490 NC_000014.9 scf158 99.97 True fake: scaffold gap size wrong estimation (local) 54150554 54151580 82146 83172 NC_000014.9 scf158 100.0 True fake: scaffold gap size wrong estimation (local) 54151487 54152117 83493 84123 NC_000014.9 scf158 100.0 True local misassembly 54152618 54154405 84124 85911 NC_000014.9 scf158 99.89 True fake: scaffold gap size wrong estimation (local) 54154959 54164795 87280 97898 NC_000014.9 scf158 99.96 True fake: scaffold gap size wrong estimation (local) 54164714 54176318 98606 110210 NC_000014.9 scf158 99.93 True fake: scaffold gap size wrong estimation (local) 54176523 54188681 111224 123386 NC_000014.9 scf158 99.91 True fake: scaffold gap size wrong estimation (local) 54188937 54190861 124419 126343 NC_000014.9 scf158 99.84 True fake: scaffold gap size wrong estimation (local) 54191051 54195201 128256 132447 NC_000014.9 scf158 98.85 True fake: scaffold gap size wrong estimation (local) 54195593 54198243 133636 136286 NC_000014.9 scf158 99.92 True fake: scaffold gap size wrong estimation (local) 54198147 54200712 137016 139580 NC_000014.9 scf158 99.84 True fake: scaffold gap size wrong estimation (local) 54200617 54202704 140276 142363 NC_000014.9 scf158 99.95 True fake: scaffold gap size wrong estimation (local) 54204797 54205730 145008 145941 NC_000014.9 scf158 99.79 True fake: scaffold gap size wrong estimation (local) 54205731 54206259 146111 146639 NC_000014.9 scf158 100.0 True indel: indel (<= 5bp) 54206594 54207667 146977 148050 NC_000014.9 scf158 99.72 True fake: scaffold gap size wrong estimation (local) 54207879 54209962 149228 151311 NC_000014.9 scf158 99.9 True local misassembly 54210198 54211362 151316 152480 NC_000014.9 scf158 100.0 True fake: scaffold gap size wrong estimation (local) 54211269 54217262 153232 159225 NC_000014.9 scf158 99.93 True fake: scaffold gap size wrong estimation (local) 54217176 54234129 159915 177872 NC_000014.9 scf158 99.1 True CONTIG scf158 177872 correct 60023964 60037080 14820 1709 NC_000014.9 scf159 99.82 True fake: scaffold gap size wrong estimation (local) 59995009 60023766 45291 15767 NC_000014.9 scf159 99.61 True CONTIG scf159 45325 correct 28994833 29001938 7106 1 NC_000014.9 scf160 99.97 True fake: scaffold gap size wrong estimation (local) 28989735 28993315 12943 9363 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28981548 28989824 21831 13555 NC_000014.9 scf160 99.99 True fake: scaffold gap size wrong estimation (local) 28972413 28981647 31742 22508 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28957659 28972246 49585 32629 NC_000014.9 scf160 98.37 True fake: scaffold gap size wrong estimation (local) 28957201 28957722 51575 51054 NC_000014.9 scf160 100.0 True local misassembly 28956036 28956830 52619 51825 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28950498 28955178 59151 54471 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28940647 28950588 69754 59868 NC_000014.9 scf160 99.12 True fake: scaffold gap size wrong estimation (local) 28939750 28940555 71431 70626 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28920363 28938300 92207 73799 NC_000014.9 scf160 99.46 True fake: scaffold gap size wrong estimation (local) 28918193 28920446 95293 93040 NC_000014.9 scf160 99.96 True fake: scaffold gap size wrong estimation (local) 28912266 28918288 102016 95994 NC_000014.9 scf160 99.97 True fake: scaffold gap size wrong estimation (local) 28909982 28912359 105110 102733 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28888818 28910075 129217 106339 NC_000014.9 scf160 97.51 True fake: scaffold gap size wrong estimation (local) 28871706 28888873 147129 129959 NC_000014.9 scf160 99.97 True fake: scaffold gap size wrong estimation (local) 28869910 28871798 149739 147847 NC_000014.9 scf160 99.74 True fake: scaffold gap size wrong estimation (local) 28866891 28869495 153561 150957 NC_000014.9 scf160 100.0 True fake: scaffold gap size wrong estimation (local) 28858932 28866493 163491 154816 NC_000014.9 scf160 98.72 True fake: scaffold gap size wrong estimation (local) 28854013 28859029 169148 164132 NC_000014.9 scf160 99.98 True fake: scaffold gap size wrong estimation (local) 28850266 28854076 175078 169954 NC_000014.9 scf160 98.55 True fake: scaffold gap size wrong estimation (local) 28848830 28849636 176310 175504 NC_000014.9 scf160 100.0 True CONTIG scf160 179830 correct 27359355 27360121 785 1 NC_000014.9 scf161 97.07 True fake: scaffold gap size wrong estimation (local) 27351520 27357931 9656 3224 NC_000014.9 scf161 99.39 True fake: scaffold gap size wrong estimation (local) 27323792 27350848 38901 11102 NC_000014.9 scf161 99.68 True fake: scaffold gap size wrong estimation (local) 27317444 27323890 46045 39599 NC_000014.9 scf161 99.95 True fake: scaffold gap size wrong estimation (local) 27313080 27317535 51115 46660 NC_000014.9 scf161 99.96 True fake: scaffold gap size wrong estimation (local) 27301544 27313175 63142 51777 NC_000014.9 scf161 97.7 True fake: scaffold gap size wrong estimation (local) 27299187 27301517 66536 64206 NC_000014.9 scf161 99.91 True fake: scaffold gap size wrong estimation (local) 27294463 27299091 73079 67535 NC_000014.9 scf161 98.85 True fake: scaffold gap size wrong estimation (local) 27292596 27294058 75784 74322 NC_000014.9 scf161 99.79 True fake: scaffold gap size wrong estimation (local) 27272941 27292507 96895 76616 NC_000014.9 scf161 99.77 True fake: scaffold gap size wrong estimation (local) 27266106 27273031 104515 97587 NC_000014.9 scf161 99.91 True fake: scaffold gap size wrong estimation (local) 27265656 27266176 105972 105452 NC_000014.9 scf161 99.81 True fake: scaffold gap size wrong estimation (local) 27256328 27264403 116302 108193 NC_000014.9 scf161 99.49 True fake: scaffold gap size wrong estimation (local) 27255240 27256424 118176 116992 NC_000014.9 scf161 99.83 True local misassembly 27252452 27255035 120760 118177 NC_000014.9 scf161 99.92 True fake: scaffold gap size wrong estimation (local) 27249705 27252551 124297 121451 NC_000014.9 scf161 99.89 True fake: scaffold gap size wrong estimation (local) 27240827 27249315 134282 125745 NC_000014.9 scf161 99.36 True fake: scaffold gap size wrong estimation (local) 27225327 27239932 150564 135953 NC_000014.9 scf161 99.91 True fake: scaffold gap size wrong estimation (local) 27221611 27224381 154957 152187 NC_000014.9 scf161 100.0 True fake: scaffold gap size wrong estimation (local) 27219517 27221710 157775 155611 NC_000014.9 scf161 98.59 True fake: scaffold gap size wrong estimation (local) 27193530 27219615 185875 159051 NC_000014.9 scf161 99.71 True fake: scaffold gap size wrong estimation (local) 27191000 27192949 189154 187205 NC_000014.9 scf161 99.85 True fake: scaffold gap size wrong estimation (local) 27184921 27191062 196083 189930 NC_000014.9 scf161 99.69 True fake: scaffold gap size wrong estimation (local) 27171137 27185017 211341 196741 NC_000014.9 scf161 99.72 True CONTIG scf161 213191 correct 54033643 54037965 2588 6911 NC_000014.9 scf162 99.79 True fake: scaffold gap size wrong estimation (local) 54037965 54055239 8044 24930 NC_000014.9 scf162 97.63 True fake: scaffold gap size wrong estimation (local) 54055906 54069092 26323 39546 NC_000014.9 scf162 99.5 True fake: scaffold gap size wrong estimation (local) 54068995 54071919 40179 43103 NC_000014.9 scf162 99.73 True CONTIG scf162 43103 correct 43347389 43370749 1 24878 NC_000014.9 scf163 99.66 True CONTIG scf163 24882 correct 53803705 53816536 1948 15729 NC_000014.9 scf164 99.61 True fake: scaffold gap size wrong estimation (local) 53816962 53818671 16938 18647 NC_000014.9 scf164 99.94 True fake: scaffold gap size wrong estimation (local) 53818572 53837618 19303 38346 NC_000014.9 scf164 99.82 True fake: scaffold gap size wrong estimation (local) 53837535 53854561 39225 56278 NC_000014.9 scf164 99.58 True fake: scaffold gap size wrong estimation (local) 53854464 53856142 56982 58658 NC_000014.9 scf164 99.7 True fake: scaffold gap size wrong estimation (local) 53856066 53877245 59457 81360 NC_000014.9 scf164 99.86 True fake: scaffold gap size wrong estimation (local) 53878407 53887380 83136 92100 NC_000014.9 scf164 99.8 True fake: scaffold gap size wrong estimation (local) 53887920 53889311 93427 94818 NC_000014.9 scf164 99.64 True local misassembly 53889482 53891593 94819 96930 NC_000014.9 scf164 100.0 True fake: scaffold gap size wrong estimation (local) 53891505 53899971 97560 107703 NC_000014.9 scf164 98.69 True fake: scaffold gap size wrong estimation (local) 53900148 53909187 108720 117739 NC_000014.9 scf164 99.62 True CONTIG scf164 117739 correct 29477327 29478224 896 1 NC_000014.9 scf165 99.78 True fake: scaffold gap size wrong estimation (local) 29466396 29477414 12649 1635 NC_000014.9 scf165 99.72 True fake: scaffold gap size wrong estimation (local) 29440441 29466171 40234 13701 NC_000014.9 scf165 99.72 True fake: scaffold gap size wrong estimation (local) 29431279 29440511 51447 41000 NC_000014.9 scf165 98.64 True fake: scaffold gap size wrong estimation (local) 29429107 29431144 54455 52418 NC_000014.9 scf165 99.8 True local misassembly 29428342 29428863 54977 54456 NC_000014.9 scf165 100.0 True fake: scaffold gap size wrong estimation (local) 29414919 29428432 69368 55854 NC_000014.9 scf165 99.93 True fake: scaffold gap size wrong estimation (local) 29413635 29414778 71467 70304 NC_000014.9 scf165 98.11 True fake: scaffold gap size wrong estimation (local) 29406107 29412319 79741 73529 NC_000014.9 scf165 100.0 True fake: scaffold gap size wrong estimation (local) 29382906 29406184 104320 80344 NC_000014.9 scf165 99.94 True fake: scaffold gap size wrong estimation (local) 29380418 29383002 107572 104995 NC_000014.9 scf165 99.61 True fake: scaffold gap size wrong estimation (local) 29369662 29380160 119153 108653 NC_000014.9 scf165 99.95 True fake: scaffold gap size wrong estimation (local) 29365918 29369513 123636 120050 NC_000014.9 scf165 99.69 True fake: scaffold gap size wrong estimation (local) 29363553 29366010 126824 124367 NC_000014.9 scf165 100.0 True fake: scaffold gap size wrong estimation (local) 29340776 29363304 151079 127819 NC_000014.9 scf165 99.83 True fake: scaffold gap size wrong estimation (local) 29337382 29340694 155270 151958 NC_000014.9 scf165 99.88 True fake: scaffold gap size wrong estimation (local) 29335041 29337476 158411 155977 NC_000014.9 scf165 99.84 True fake: scaffold gap size wrong estimation (local) 29329166 29333590 164999 160550 NC_000014.9 scf165 99.35 True fake: scaffold gap size wrong estimation (local) 29323121 29328947 171672 166040 NC_000014.9 scf165 96.67 True fake: scaffold gap size wrong estimation (local) 29317122 29323210 179354 172436 NC_000014.9 scf165 99.31 True fake: scaffold gap size wrong estimation (local) 29314597 29317220 182673 180054 NC_000014.9 scf165 99.77 True fake: scaffold gap size wrong estimation (local) 29297766 29314694 200265 183339 NC_000014.9 scf165 99.96 True fake: scaffold gap size wrong estimation (local) 29293254 29297865 205542 200931 NC_000014.9 scf165 99.91 True fake: scaffold gap size wrong estimation (local) 29286626 29293151 215351 207840 NC_000014.9 scf165 99.74 True fake: scaffold gap size wrong estimation (local) 29286108 29286722 216845 216250 NC_000014.9 scf165 96.59 True CONTIG scf165 218351 correct 30668709 30677836 1 9832 NC_000014.9 scf166 99.99 True relocation, inconsistency = 49771014 80448851 80462104 9833 23086 NC_000014.9 scf166 99.98 True fake: scaffold gap size wrong estimation (local) 80462010 80472498 23720 34990 NC_000014.9 scf166 99.97 True fake: scaffold gap size wrong estimation (local) 80472400 80486405 35738 50303 NC_000014.9 scf166 98.78 True CONTIG scf166 50303 misassembled 19726162 19731224 1 5087 NC_000014.9 scf167 99.39 True fake: scaffold gap size wrong estimation (local) 19731149 19736864 5716 11431 NC_000014.9 scf167 99.91 True fake: scaffold gap size wrong estimation (local) 19737478 19739344 12805 14656 NC_000014.9 scf167 99.14 True fake: scaffold gap size wrong estimation (local) 19739522 19749634 15631 25743 NC_000014.9 scf167 99.93 True fake: scaffold gap size wrong estimation (local) 19750048 19756830 26864 33644 NC_000014.9 scf167 99.9 True fake: scaffold gap size wrong estimation (local) 19756737 19771615 34269 49147 NC_000014.9 scf167 99.88 True fake: scaffold gap size wrong estimation (local) 19771529 19775542 49834 53847 NC_000014.9 scf167 99.95 True fake: scaffold gap size wrong estimation (local) 19775685 19785033 54854 64978 NC_000014.9 scf167 99.7 True fake: scaffold gap size wrong estimation (local) 19784942 19793959 65686 75299 NC_000014.9 scf167 97.26 True fake: scaffold gap size wrong estimation (local) 19793861 19796599 76010 78748 NC_000014.9 scf167 99.85 True fake: scaffold gap size wrong estimation (local) 19796827 19800830 79704 83745 NC_000014.9 scf167 99.87 True fake: scaffold gap size wrong estimation (local) 19800753 19811479 84466 96018 NC_000014.9 scf167 99.5 True fake: scaffold gap size wrong estimation (local) 19811416 19814973 96715 100272 NC_000014.9 scf167 99.94 True fake: scaffold gap size wrong estimation (local) 19815438 19817116 101561 103238 NC_000014.9 scf167 99.88 True fake: scaffold gap size wrong estimation (local) 19819217 19820121 108243 109147 NC_000014.9 scf167 99.78 True fake: scaffold gap size wrong estimation (local) 19820024 19825603 110010 115619 NC_000014.9 scf167 99.16 True fake: scaffold gap size wrong estimation (local) 19825554 19827326 116335 118107 NC_000014.9 scf167 99.83 True fake: scaffold gap size wrong estimation (local) 19828451 19829793 120133 121475 NC_000014.9 scf167 99.48 True fake: scaffold gap size wrong estimation (local) 19829695 19833550 122473 126328 NC_000014.9 scf167 99.9 True fake: scaffold gap size wrong estimation (local) 19833867 19835454 127458 129045 NC_000014.9 scf167 99.87 True fake: scaffold gap size wrong estimation (local) 19835359 19844833 130359 139851 NC_000014.9 scf167 99.74 True fake: scaffold gap size wrong estimation (local) 19844734 19849506 140538 145190 NC_000014.9 scf167 97.17 True fake: scaffold gap size wrong estimation (local) 19849407 19852785 145794 149190 NC_000014.9 scf167 99.21 True fake: scaffold gap size wrong estimation (local) 19852694 19855076 149942 152324 NC_000014.9 scf167 99.83 True fake: scaffold gap size wrong estimation (local) 19855074 19855968 153644 154538 NC_000014.9 scf167 99.55 True local misassembly 19856739 19857922 154696 155879 NC_000014.9 scf167 99.92 True fake: scaffold gap size wrong estimation (local) 19858091 19860726 157444 160079 NC_000014.9 scf167 99.77 True local misassembly 19860843 19861558 160080 160795 NC_000014.9 scf167 99.3 True fake: scaffold gap size wrong estimation (local) 19861464 19865857 161870 166207 NC_000014.9 scf167 98.73 True fake: scaffold gap size wrong estimation (local) 19867185 19868620 168280 169715 NC_000014.9 scf167 100.0 True local misassembly 19868873 19869954 169716 170797 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 19869873 19872178 171648 173949 NC_000014.9 scf167 99.83 True fake: scaffold gap size wrong estimation (local) 19873628 19882843 176184 186204 NC_000014.9 scf167 99.48 True relocation, inconsistency = 70384304 90267148 90271908 186205 190973 NC_000014.9 scf167 99.67 True fake: scaffold gap size wrong estimation (local) 90271842 90273547 191732 193439 NC_000014.9 scf167 99.59 True fake: scaffold gap size wrong estimation (local) 90273455 90273980 194378 194903 NC_000014.9 scf167 99.62 True indel: indel (<= 5bp) 90273984 90274546 194904 195466 NC_000014.9 scf167 99.82 True local misassembly 90275083 90276235 195804 196956 NC_000014.9 scf167 99.74 True fake: scaffold gap size wrong estimation (local) 90276410 90284608 197969 206167 NC_000014.9 scf167 99.91 True fake: scaffold gap size wrong estimation (local) 90284513 90289879 206881 213028 NC_000014.9 scf167 98.48 True fake: scaffold gap size wrong estimation (local) 90289810 90297084 213749 221023 NC_000014.9 scf167 99.92 True fake: scaffold gap size wrong estimation (local) 90296995 90309490 221754 237232 NC_000014.9 scf167 98.24 True fake: scaffold gap size wrong estimation (local) 90309418 90313160 238301 243098 NC_000014.9 scf167 99.1 True fake: scaffold gap size wrong estimation (local) 90313325 90315866 244109 246628 NC_000014.9 scf167 99.1 True fake: scaffold gap size wrong estimation (local) 90315959 90324534 247539 256114 NC_000014.9 scf167 99.95 True fake: scaffold gap size wrong estimation (local) 90324674 90327798 257019 260017 NC_000014.9 scf167 95.87 True fake: scaffold gap size wrong estimation (local) 90327702 90329712 260715 262722 NC_000014.9 scf167 99.8 True fake: scaffold gap size wrong estimation (local) 90330219 90330807 264767 265355 NC_000014.9 scf167 100.0 True local misassembly 90331617 90333201 265409 266993 NC_000014.9 scf167 99.94 True fake: scaffold gap size wrong estimation (local) 90333135 90336059 268369 271291 NC_000014.9 scf167 99.73 True fake: scaffold gap size wrong estimation (local) 90336000 90339418 271993 275411 NC_000014.9 scf167 99.85 True fake: scaffold gap size wrong estimation (local) 90341072 90341785 277891 278604 NC_000014.9 scf167 99.44 True local misassembly 90342243 90342916 279112 279785 NC_000014.9 scf167 99.85 True fake: scaffold gap size wrong estimation (local) 90343842 90349538 281696 288109 NC_000014.9 scf167 96.06 True fake: scaffold gap size wrong estimation (local) 90349444 90351690 288829 291217 NC_000014.9 scf167 96.67 True fake: scaffold gap size wrong estimation (local) 90351635 90353260 291791 293416 NC_000014.9 scf167 99.08 True fake: scaffold gap size wrong estimation (local) 90353589 90364173 293827 306649 NC_000014.9 scf167 97.59 True fake: scaffold gap size wrong estimation (local) 90364102 90365489 307466 308853 NC_000014.9 scf167 99.86 True indel: indel (<= 5bp) 90365492 90366152 308854 309514 NC_000014.9 scf167 100.0 True local misassembly 90366681 90367190 309686 310195 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90367101 90368217 310966 312087 NC_000014.9 scf167 99.55 True fake: scaffold gap size wrong estimation (local) 90368123 90372569 312908 317353 NC_000014.9 scf167 99.71 True fake: scaffold gap size wrong estimation (local) 90372494 90374574 318039 320110 NC_000014.9 scf167 98.0 True fake: scaffold gap size wrong estimation (local) 90374520 90394677 320919 342793 NC_000014.9 scf167 98.5 True fake: scaffold gap size wrong estimation (local) 90395133 90401900 344008 351582 NC_000014.9 scf167 99.38 True fake: scaffold gap size wrong estimation (local) 90401802 90409835 352290 360324 NC_000014.9 scf167 99.94 True fake: scaffold gap size wrong estimation (local) 90410137 90411035 361414 362312 NC_000014.9 scf167 99.78 True indel: indel (> 5bp) 90411052 90411762 362313 363023 NC_000014.9 scf167 99.86 True fake: scaffold gap size wrong estimation (local) 90412926 90415832 364930 368540 NC_000014.9 scf167 96.72 True fake: scaffold gap size wrong estimation (local) 90416027 90420770 369431 374174 NC_000014.9 scf167 99.85 True fake: scaffold gap size wrong estimation (local) 90420698 90422964 374895 377161 NC_000014.9 scf167 99.96 True fake: scaffold gap size wrong estimation (local) 90422865 90427242 377877 382254 NC_000014.9 scf167 99.98 True fake: scaffold gap size wrong estimation (local) 90427151 90429106 382965 384920 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90429175 90430471 386500 387796 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90431585 90433917 389794 392126 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90434170 90436429 393408 395619 NC_000014.9 scf167 95.54 True fake: scaffold gap size wrong estimation (local) 90437244 90441558 397339 401653 NC_000014.9 scf167 99.93 True fake: scaffold gap size wrong estimation (local) 90441490 90448815 402324 410611 NC_000014.9 scf167 98.56 True fake: scaffold gap size wrong estimation (local) 90448723 90461983 411291 424546 NC_000014.9 scf167 99.83 True indel: indel (> 5bp) 90462038 90480564 424612 444600 NC_000014.9 scf167 98.99 True fake: scaffold gap size wrong estimation (local) 90480472 90489260 445260 454877 NC_000014.9 scf167 99.94 True fake: scaffold gap size wrong estimation (local) 90489162 90492582 455530 458950 NC_000014.9 scf167 99.8 True fake: scaffold gap size wrong estimation (local) 90492935 90496411 460063 463551 NC_000014.9 scf167 99.54 True fake: scaffold gap size wrong estimation (local) 90496415 90501579 464801 469815 NC_000014.9 scf167 97.01 True fake: scaffold gap size wrong estimation (local) 90501740 90505301 470829 474308 NC_000014.9 scf167 97.67 True fake: scaffold gap size wrong estimation (local) 90505387 90506325 475203 476141 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90506247 90510025 476924 480702 NC_000014.9 scf167 99.92 True fake: scaffold gap size wrong estimation (local) 90509929 90512433 481431 483927 NC_000014.9 scf167 99.68 True fake: scaffold gap size wrong estimation (local) 90512336 90537788 484700 512500 NC_000014.9 scf167 99.81 True fake: scaffold gap size wrong estimation (local) 90537706 90542000 513207 517496 NC_000014.9 scf167 99.65 True fake: scaffold gap size wrong estimation (local) 90542135 90546968 518363 523196 NC_000014.9 scf167 99.96 True fake: scaffold gap size wrong estimation (local) 90546879 90565419 524000 543393 NC_000014.9 scf167 99.85 True fake: scaffold gap size wrong estimation (local) 90565556 90573409 544265 552118 NC_000014.9 scf167 99.95 True fake: scaffold gap size wrong estimation (local) 90573311 90579617 552797 559121 NC_000014.9 scf167 99.72 True fake: scaffold gap size wrong estimation (local) 90579579 90586393 559854 566668 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90586307 90599175 567339 580978 NC_000014.9 scf167 99.41 True fake: scaffold gap size wrong estimation (local) 90599078 90608060 581704 590686 NC_000014.9 scf167 99.99 True fake: scaffold gap size wrong estimation (local) 90607997 90630837 591422 614981 NC_000014.9 scf167 99.5 True fake: scaffold gap size wrong estimation (local) 90630940 90635727 615832 620619 NC_000014.9 scf167 99.77 True fake: scaffold gap size wrong estimation (local) 90636087 90644356 621762 630025 NC_000014.9 scf167 99.79 True fake: scaffold gap size wrong estimation (local) 90644282 90666394 630731 654398 NC_000014.9 scf167 99.71 True fake: scaffold gap size wrong estimation (local) 90666308 90668125 655270 657087 NC_000014.9 scf167 100.0 True fake: scaffold gap size wrong estimation (local) 90668035 90681994 657798 671763 NC_000014.9 scf167 99.87 True fake: scaffold gap size wrong estimation (local) 90681899 90688553 672460 679114 NC_000014.9 scf167 99.95 True CONTIG scf167 679154 misassembled 87429061 87433480 1 4443 NC_000014.9 scf168 99.48 True relocation, inconsistency = -48376948 39056533 39058403 4444 6315 NC_000014.9 scf168 99.84 True fake: scaffold gap size wrong estimation (local) 39059286 39063287 8162 12163 NC_000014.9 scf168 99.95 True fake: scaffold gap size wrong estimation (local) 39063189 39066569 12854 16074 NC_000014.9 scf168 95.09 True fake: scaffold gap size wrong estimation (local) 39066492 39067535 17047 18090 NC_000014.9 scf168 100.0 True local misassembly 39067944 39069582 18255 19893 NC_000014.9 scf168 99.94 True fake: scaffold gap size wrong estimation (local) 39069627 39071033 20854 22279 NC_000014.9 scf168 98.67 True fake: scaffold gap size wrong estimation (local) 39070937 39071792 23490 24345 NC_000014.9 scf168 100.0 True local misassembly 39072639 39073523 24531 25415 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 39073762 39077255 26861 30623 NC_000014.9 scf168 97.27 True relocation, inconsistency = 26346216 65423472 65425471 32616 30624 NC_000014.9 scf168 99.6 True fake: scaffold gap size wrong estimation (local) 65421121 65423063 35818 33877 NC_000014.9 scf168 99.95 True fake: scaffold gap size wrong estimation (local) 65404585 65421209 53170 36532 NC_000014.9 scf168 99.92 True fake: scaffold gap size wrong estimation (local) 65404074 65404668 54492 53898 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65402432 65403832 56111 54711 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65399190 65401695 60104 57599 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65395025 65399283 65057 60799 NC_000014.9 scf168 99.98 True fake: scaffold gap size wrong estimation (local) 65392141 65395118 68642 65734 NC_000014.9 scf168 97.68 True fake: scaffold gap size wrong estimation (local) 65390767 65391699 71625 70693 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65386855 65389287 76460 74028 NC_000014.9 scf168 99.92 True fake: scaffold gap size wrong estimation (local) 65383266 65384379 80613 79500 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65382320 65383333 82630 81617 NC_000014.9 scf168 100.0 True local misassembly 65380315 65382013 84329 82631 NC_000014.9 scf168 99.94 True fake: scaffold gap size wrong estimation (local) 65378838 65380402 87004 85440 NC_000014.9 scf168 99.74 True indel: indel (<= 5bp) 65376598 65378837 89248 87009 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65374762 65375980 91894 90676 NC_000014.9 scf168 100.0 True local misassembly 65372665 65374498 93785 91952 NC_000014.9 scf168 99.84 True fake: scaffold gap size wrong estimation (local) 65370355 65372534 96960 94781 NC_000014.9 scf168 99.91 True fake: scaffold gap size wrong estimation (local) 65368595 65370226 99701 98070 NC_000014.9 scf168 99.94 True fake: scaffold gap size wrong estimation (local) 65365901 65368134 103214 100982 NC_000014.9 scf168 99.87 True fake: scaffold gap size wrong estimation (local) 65364371 65365589 105685 104467 NC_000014.9 scf168 99.75 True local misassembly 65363348 65364153 106491 105686 NC_000014.9 scf168 100.0 True fake: scaffold gap size wrong estimation (local) 65361583 65362826 109212 107973 NC_000014.9 scf168 99.6 True fake: scaffold gap size wrong estimation (local) 65356129 65361228 116206 110228 NC_000014.9 scf168 96.19 True fake: scaffold gap size wrong estimation (local) 65351081 65356228 122920 116911 NC_000014.9 scf168 99.88 True fake: scaffold gap size wrong estimation (local) 65347936 65350824 126840 124034 NC_000014.9 scf168 97.06 True fake: scaffold gap size wrong estimation (local) 65346068 65347998 129983 128042 NC_000014.9 scf168 99.02 True CONTIG scf168 129983 misassembled 41516621 41517305 1108 409 NC_000014.9 scf169 97.43 True fake: scaffold gap size wrong estimation (local) 41499885 41516032 19554 2570 NC_000014.9 scf169 99.08 True fake: scaffold gap size wrong estimation (local) 41492830 41499983 27638 20186 NC_000014.9 scf169 99.17 True fake: scaffold gap size wrong estimation (local) 41469663 41492312 52554 29164 NC_000014.9 scf169 99.56 True fake: scaffold gap size wrong estimation (local) 41458151 41469463 65620 53542 NC_000014.9 scf169 99.97 True fake: scaffold gap size wrong estimation (local) 41450674 41458250 73864 66288 NC_000014.9 scf169 99.93 True fake: scaffold gap size wrong estimation (local) 41434304 41450771 90991 74521 NC_000014.9 scf169 99.81 True fake: scaffold gap size wrong estimation (local) 41427436 41434399 98638 91675 NC_000014.9 scf169 99.9 True fake: scaffold gap size wrong estimation (local) 41423036 41427531 103823 99328 NC_000014.9 scf169 99.96 True fake: scaffold gap size wrong estimation (local) 41420786 41423121 106826 104499 NC_000014.9 scf169 99.61 True fake: scaffold gap size wrong estimation (local) 41409369 41420480 119836 107958 NC_000014.9 scf169 99.64 True fake: scaffold gap size wrong estimation (local) 41403435 41409452 127358 120499 NC_000014.9 scf169 99.13 True fake: scaffold gap size wrong estimation (local) 41402156 41402730 130772 130198 NC_000014.9 scf169 100.0 True indel: indel (> 5bp) 41401361 41402155 131596 130802 NC_000014.9 scf169 100.0 True fake: scaffold gap size wrong estimation (local) 41399847 41400608 133057 132296 NC_000014.9 scf169 100.0 True fake: scaffold gap size wrong estimation (local) 41396520 41399662 137229 134087 NC_000014.9 scf169 100.0 True fake: scaffold gap size wrong estimation (local) 41393601 41395957 140900 138544 NC_000014.9 scf169 99.92 True fake: scaffold gap size wrong estimation (local) 41386620 41393699 148641 141563 NC_000014.9 scf169 99.96 True fake: scaffold gap size wrong estimation (local) 41372299 41386537 164552 149501 NC_000014.9 scf169 99.71 True fake: scaffold gap size wrong estimation (local) 41361503 41371451 175999 166089 NC_000014.9 scf169 99.58 True fake: scaffold gap size wrong estimation (local) 41356233 41361589 182037 176681 NC_000014.9 scf169 99.93 True fake: scaffold gap size wrong estimation (local) 41347795 41356323 191206 182708 NC_000014.9 scf169 99.48 True fake: scaffold gap size wrong estimation (local) 41342420 41347221 197225 192421 NC_000014.9 scf169 99.73 True fake: scaffold gap size wrong estimation (local) 41339741 41342307 200664 198098 NC_000014.9 scf169 99.81 True CONTIG scf169 200664 correct 57500377 57515197 2455 17265 NC_000014.9 scf170 99.69 True fake: scaffold gap size wrong estimation (local) 57515290 57515794 18172 18676 NC_000014.9 scf170 100.0 True fake: scaffold gap size wrong estimation (local) 57517926 57521866 22049 26003 NC_000014.9 scf170 99.6 True fake: scaffold gap size wrong estimation (local) 57521789 57526964 26632 31822 NC_000014.9 scf170 100.0 True fake: scaffold gap size wrong estimation (local) 57526872 57534889 32465 40482 NC_000014.9 scf170 100.0 True fake: scaffold gap size wrong estimation (local) 57535471 57538771 41969 45301 NC_000014.9 scf170 99.04 True fake: scaffold gap size wrong estimation (local) 57538877 57539415 46167 46705 NC_000014.9 scf170 100.0 True fake: scaffold gap size wrong estimation (local) 57539416 57540179 46851 47614 NC_000014.9 scf170 100.0 True local misassembly 57540757 57541956 47874 49073 NC_000014.9 scf170 96.08 True indel: indel (> 5bp) 57542141 57542867 49213 49939 NC_000014.9 scf170 100.0 True fake: scaffold gap size wrong estimation (local) 57543018 57543613 50121 50716 NC_000014.9 scf170 99.83 True fake: scaffold gap size wrong estimation (local) 57543520 57551920 51662 60129 NC_000014.9 scf170 96.77 True fake: scaffold gap size wrong estimation (local) 57553105 57577762 62136 89170 NC_000014.9 scf170 99.82 True fake: scaffold gap size wrong estimation (local) 57577673 57579562 89934 91763 NC_000014.9 scf170 96.77 True fake: scaffold gap size wrong estimation (local) 57579465 57586166 92536 99237 NC_000014.9 scf170 99.99 True fake: scaffold gap size wrong estimation (local) 57586720 57590284 100575 104138 NC_000014.9 scf170 99.97 True fake: scaffold gap size wrong estimation (local) 57590206 57600508 104818 115877 NC_000014.9 scf170 99.55 True fake: scaffold gap size wrong estimation (local) 57600709 57617148 116101 132520 NC_000014.9 scf170 99.54 True fake: scaffold gap size wrong estimation (local) 57617305 57620330 133459 136487 NC_000014.9 scf170 99.5 True CONTIG scf170 136487 correct 80082797 80088600 5804 1 NC_000014.9 scf171 99.93 True fake: scaffold gap size wrong estimation (local) 80074930 80082896 14460 6494 NC_000014.9 scf171 99.96 True fake: scaffold gap size wrong estimation (local) 80044663 80075021 47230 15173 NC_000014.9 scf171 99.85 True fake: scaffold gap size wrong estimation (local) 80042157 80042732 50338 49763 NC_000014.9 scf171 100.0 True fake: scaffold gap size wrong estimation (local) 80041259 80042218 52142 51176 NC_000014.9 scf171 99.17 True fake: scaffold gap size wrong estimation (local) 80038869 80040413 54579 53023 NC_000014.9 scf171 99.17 True fake: scaffold gap size wrong estimation (local) 80034696 80038185 60613 57124 NC_000014.9 scf171 99.94 True fake: scaffold gap size wrong estimation (local) 80033652 80034481 62405 61577 NC_000014.9 scf171 99.76 True CONTIG scf171 62405 correct 63222762 63230776 8007 1 NC_000014.9 scf172 99.75 True fake: scaffold gap size wrong estimation (local) 63219703 63222068 11853 9489 NC_000014.9 scf172 99.79 True fake: scaffold gap size wrong estimation (local) 63217679 63219798 14734 12615 NC_000014.9 scf172 99.86 True fake: scaffold gap size wrong estimation (local) 63214605 63217096 18478 15987 NC_000014.9 scf172 99.84 True fake: scaffold gap size wrong estimation (local) 63189941 63214698 47255 19143 NC_000014.9 scf172 99.0 True fake: scaffold gap size wrong estimation (local) 63173521 63189703 64428 48247 NC_000014.9 scf172 99.91 True fake: scaffold gap size wrong estimation (local) 63166729 63173415 72779 65288 NC_000014.9 scf172 99.35 True fake: scaffold gap size wrong estimation (local) 63162528 63164772 77624 75380 NC_000014.9 scf172 99.91 True fake: scaffold gap size wrong estimation (local) 63155911 63162604 85082 78399 NC_000014.9 scf172 99.69 True fake: scaffold gap size wrong estimation (local) 63155135 63155756 87559 86938 NC_000014.9 scf172 99.84 True local misassembly 63152935 63153693 88593 87835 NC_000014.9 scf172 99.87 True indel: indel (<= 5bp) 63147809 63152934 93720 88595 NC_000014.9 scf172 99.82 True fake: scaffold gap size wrong estimation (local) 63144652 63147908 98573 95292 NC_000014.9 scf172 98.96 True CONTIG scf172 98626 correct 46351577 46360957 1 9257 NC_000014.9 scf173 97.64 True fake: scaffold gap size wrong estimation (local) 46361404 46371890 10390 21577 NC_000014.9 scf173 99.45 True fake: scaffold gap size wrong estimation (local) 46371811 46373793 22286 24269 NC_000014.9 scf173 99.55 True fake: scaffold gap size wrong estimation (local) 46374021 46384478 25341 35796 NC_000014.9 scf173 99.64 True fake: scaffold gap size wrong estimation (local) 46384380 46401774 36462 55271 NC_000014.9 scf173 99.68 True fake: scaffold gap size wrong estimation (local) 46401675 46417322 55888 72325 NC_000014.9 scf173 99.6 True fake: scaffold gap size wrong estimation (local) 46417243 46419119 73075 74951 NC_000014.9 scf173 99.89 True fake: scaffold gap size wrong estimation (local) 46420162 46427681 76784 84962 NC_000014.9 scf173 97.43 True fake: scaffold gap size wrong estimation (local) 46429632 46432249 87548 90165 NC_000014.9 scf173 99.92 True fake: scaffold gap size wrong estimation (local) 46432150 46433117 91487 92454 NC_000014.9 scf173 99.9 True fake: scaffold gap size wrong estimation (local) 46433029 46439684 93333 100752 NC_000014.9 scf173 99.73 True fake: scaffold gap size wrong estimation (local) 46440294 46442727 102185 104780 NC_000014.9 scf173 95.78 True fake: scaffold gap size wrong estimation (local) 46443364 46459936 105410 122976 NC_000014.9 scf173 99.48 True fake: scaffold gap size wrong estimation (local) 46459839 46467649 123691 131490 NC_000014.9 scf173 99.72 True fake: scaffold gap size wrong estimation (local) 46467794 46473247 132383 137825 NC_000014.9 scf173 99.63 True fake: scaffold gap size wrong estimation (local) 46474624 46478519 139911 144125 NC_000014.9 scf173 97.18 True fake: scaffold gap size wrong estimation (local) 46478764 46498530 145275 166640 NC_000014.9 scf173 99.02 True fake: scaffold gap size wrong estimation (local) 46499027 46508847 167774 178436 NC_000014.9 scf173 99.19 True CONTIG scf173 178453 correct 44634331 44641862 8433 1 NC_000014.9 scf174 98.88 True fake: scaffold gap size wrong estimation (local) 44632396 44633080 11235 10536 NC_000014.9 scf174 97.86 True fake: scaffold gap size wrong estimation (local) 44618238 44632495 26132 11875 NC_000014.9 scf174 99.94 True fake: scaffold gap size wrong estimation (local) 44602134 44618315 42988 26807 NC_000014.9 scf174 99.95 True fake: scaffold gap size wrong estimation (local) 44595835 44600522 49890 45203 NC_000014.9 scf174 99.94 True fake: scaffold gap size wrong estimation (local) 44586636 44595911 59824 50549 NC_000014.9 scf174 99.95 True fake: scaffold gap size wrong estimation (local) 44585466 44586442 61850 60874 NC_000014.9 scf174 99.8 True fake: scaffold gap size wrong estimation (local) 44582674 44584202 65661 64114 NC_000014.9 scf174 98.71 True fake: scaffold gap size wrong estimation (local) 44575402 44582052 75119 67451 NC_000014.9 scf174 98.67 True fake: scaffold gap size wrong estimation (local) 44573656 44575231 77735 76160 NC_000014.9 scf174 99.87 True fake: scaffold gap size wrong estimation (local) 44567739 44573744 84363 78358 NC_000014.9 scf174 99.82 True fake: scaffold gap size wrong estimation (local) 44559354 44567832 93499 85021 NC_000014.9 scf174 99.87 True fake: scaffold gap size wrong estimation (local) 44557540 44559208 96146 94478 NC_000014.9 scf174 99.82 True CONTIG scf174 96146 correct 79773650 79790638 1 19394 NC_000014.9 scf175 98.36 True fake: scaffold gap size wrong estimation (local) 79790886 79794336 20490 24289 NC_000014.9 scf175 96.62 True fake: scaffold gap size wrong estimation (local) 79794238 79804038 25119 34919 NC_000014.9 scf175 99.97 True fake: scaffold gap size wrong estimation (local) 79803948 79819502 35603 54371 NC_000014.9 scf175 99.93 True fake: scaffold gap size wrong estimation (local) 79819660 79844745 55899 81683 NC_000014.9 scf175 99.52 True fake: scaffold gap size wrong estimation (local) 79844652 79870051 82417 111310 NC_000014.9 scf175 98.46 True fake: scaffold gap size wrong estimation (local) 79870382 79872098 112514 114294 NC_000014.9 scf175 96.18 True fake: scaffold gap size wrong estimation (local) 79872001 79878291 115035 122103 NC_000014.9 scf175 99.49 True fake: scaffold gap size wrong estimation (local) 79878197 79885084 122799 129691 NC_000014.9 scf175 99.32 True fake: scaffold gap size wrong estimation (local) 79885315 79891916 130614 137215 NC_000014.9 scf175 99.86 True fake: scaffold gap size wrong estimation (local) 79891819 79893836 137961 139992 NC_000014.9 scf175 99.16 True fake: scaffold gap size wrong estimation (local) 79893739 79897454 140718 144433 NC_000014.9 scf175 99.87 True fake: scaffold gap size wrong estimation (local) 79897931 79905949 145727 154362 NC_000014.9 scf175 97.14 True fake: scaffold gap size wrong estimation (local) 79906535 79918223 155640 167328 NC_000014.9 scf175 100.0 True fake: scaffold gap size wrong estimation (local) 79918386 79921869 168205 171673 NC_000014.9 scf175 99.51 True fake: scaffold gap size wrong estimation (local) 79921820 79925711 172368 176259 NC_000014.9 scf175 99.97 True fake: scaffold gap size wrong estimation (local) 79925621 79933914 176964 185233 NC_000014.9 scf175 99.69 True CONTIG scf175 185233 correct 25361293 25364876 3584 1 NC_000014.9 scf176 99.92 True fake: scaffold gap size wrong estimation (local) 25357280 25360498 8294 5132 NC_000014.9 scf176 97.74 True fake: scaffold gap size wrong estimation (local) 25349987 25357379 16382 8992 NC_000014.9 scf176 99.89 True fake: scaffold gap size wrong estimation (local) 25345044 25350083 22135 17094 NC_000014.9 scf176 99.8 True fake: scaffold gap size wrong estimation (local) 25342187 25344338 25825 23574 NC_000014.9 scf176 95.77 True fake: scaffold gap size wrong estimation (local) 25324836 25341691 45934 27315 NC_000014.9 scf176 98.8 True fake: scaffold gap size wrong estimation (local) 25323181 25324177 48485 47489 NC_000014.9 scf176 99.8 True local misassembly 25321634 25322994 49846 48486 NC_000014.9 scf176 99.93 True fake: scaffold gap size wrong estimation (local) 25316087 25321501 56206 50794 NC_000014.9 scf176 99.37 True fake: scaffold gap size wrong estimation (local) 25312466 25315948 60665 57186 NC_000014.9 scf176 99.43 True fake: scaffold gap size wrong estimation (local) 25296495 25312564 77337 61280 NC_000014.9 scf176 99.58 True fake: scaffold gap size wrong estimation (local) 25289886 25296593 84657 78004 NC_000014.9 scf176 98.87 True fake: scaffold gap size wrong estimation (local) 25278334 25289957 97676 85339 NC_000014.9 scf176 99.69 True fake: scaffold gap size wrong estimation (local) 25273748 25278433 103098 98387 NC_000014.9 scf176 99.15 True fake: scaffold gap size wrong estimation (local) 25272884 25273846 104711 103749 NC_000014.9 scf176 99.9 True fake: scaffold gap size wrong estimation (local) 25264969 25272963 114787 105966 NC_000014.9 scf176 99.82 True fake: scaffold gap size wrong estimation (local) 25264005 25265067 117184 116122 NC_000014.9 scf176 99.81 True local misassembly 25262477 25263412 118120 117185 NC_000014.9 scf176 100.0 True fake: scaffold gap size wrong estimation (local) 25261202 25262254 120735 119684 NC_000014.9 scf176 99.91 True fake: scaffold gap size wrong estimation (local) 25254888 25261297 128320 121912 NC_000014.9 scf176 99.81 True fake: scaffold gap size wrong estimation (local) 25251652 25254971 132255 129082 NC_000014.9 scf176 95.48 True fake: scaffold gap size wrong estimation (local) 25237270 25251742 149443 132980 NC_000014.9 scf176 98.83 True fake: scaffold gap size wrong estimation (local) 25232599 25237349 155599 150069 NC_000014.9 scf176 96.97 True fake: scaffold gap size wrong estimation (local) 25231806 25232598 157377 156585 NC_000014.9 scf176 100.0 True fake: scaffold gap size wrong estimation (local) 25230690 25231627 158739 157802 NC_000014.9 scf176 99.89 True fake: scaffold gap size wrong estimation (local) 25228146 25230785 162321 159682 NC_000014.9 scf176 99.92 True fake: scaffold gap size wrong estimation (local) 25224494 25227285 166786 163995 NC_000014.9 scf176 99.86 True fake: scaffold gap size wrong estimation (local) 25216915 25224587 175904 167445 NC_000014.9 scf176 98.75 True fake: scaffold gap size wrong estimation (local) 25210731 25217008 182918 176645 NC_000014.9 scf176 99.86 True CONTIG scf176 182918 correct 86309410 86313189 5550 1065 NC_000014.9 scf177 97.92 True fake: scaffold gap size wrong estimation (local) 86308733 86309503 6958 6194 NC_000014.9 scf177 99.22 True fake: scaffold gap size wrong estimation (local) 86306327 86308645 9538 7220 NC_000014.9 scf177 99.91 True fake: scaffold gap size wrong estimation (local) 86296640 86306038 20119 10573 NC_000014.9 scf177 98.37 True fake: scaffold gap size wrong estimation (local) 86288746 86296737 28601 20614 NC_000014.9 scf177 99.84 True fake: scaffold gap size wrong estimation (local) 86287436 86288838 30778 29376 NC_000014.9 scf177 99.86 True local misassembly 86285270 86286914 32677 31033 NC_000014.9 scf177 99.88 True fake: scaffold gap size wrong estimation (local) 86284098 86285043 34134 33189 NC_000014.9 scf177 99.47 True fake: scaffold gap size wrong estimation (local) 86274643 86284195 44534 34988 NC_000014.9 scf177 99.28 True fake: scaffold gap size wrong estimation (local) 86270072 86274740 49803 45256 NC_000014.9 scf177 96.73 True fake: scaffold gap size wrong estimation (local) 86256066 86269945 64566 50703 NC_000014.9 scf177 99.29 True fake: scaffold gap size wrong estimation (local) 86255292 86255960 65897 65224 NC_000014.9 scf177 98.81 True fake: scaffold gap size wrong estimation (local) 86246973 86255356 74769 66358 NC_000014.9 scf177 99.45 True fake: scaffold gap size wrong estimation (local) 86242772 86244630 79412 77566 NC_000014.9 scf177 99.09 True fake: scaffold gap size wrong estimation (local) 86240965 86242801 82156 80314 NC_000014.9 scf177 99.24 True fake: scaffold gap size wrong estimation (local) 86238954 86240586 85083 83451 NC_000014.9 scf177 99.76 True local misassembly 86237556 86238493 86112 85175 NC_000014.9 scf177 100.0 True fake: scaffold gap size wrong estimation (local) 86228143 86237546 96487 87083 NC_000014.9 scf177 99.81 True fake: scaffold gap size wrong estimation (local) 86227047 86228235 98461 97273 NC_000014.9 scf177 99.83 True local misassembly 86226346 86226874 98990 98462 NC_000014.9 scf177 100.0 True indel: indel (<= 5bp) 86224808 86226345 100530 98993 NC_000014.9 scf177 100.0 True fake: scaffold gap size wrong estimation (local) 86217525 86224690 108578 101413 NC_000014.9 scf177 99.89 True fake: scaffold gap size wrong estimation (local) 86201600 86217602 125319 109306 NC_000014.9 scf177 99.81 True fake: scaffold gap size wrong estimation (local) 86200984 86201686 126713 126011 NC_000014.9 scf177 100.0 True fake: scaffold gap size wrong estimation (local) 86200159 86200894 127572 126837 NC_000014.9 scf177 100.0 True fake: scaffold gap size wrong estimation (local) 86188349 86198436 140824 130024 NC_000014.9 scf177 99.67 True fake: scaffold gap size wrong estimation (local) 86183649 86186890 146206 142956 NC_000014.9 scf177 99.63 True fake: scaffold gap size wrong estimation (local) 86179941 86183508 150688 147121 NC_000014.9 scf177 99.89 True fake: scaffold gap size wrong estimation (local) 86170876 86180032 161271 151442 NC_000014.9 scf177 98.53 True fake: scaffold gap size wrong estimation (local) 86157702 86170963 176046 161957 NC_000014.9 scf177 99.58 True fake: scaffold gap size wrong estimation (local) 86146272 86157611 188925 176831 NC_000014.9 scf177 99.8 True fake: scaffold gap size wrong estimation (local) 86144218 86146356 191746 189600 NC_000014.9 scf177 99.44 True fake: scaffold gap size wrong estimation (local) 86138392 86144009 198389 192798 NC_000014.9 scf177 99.47 True fake: scaffold gap size wrong estimation (local) 86125107 86138486 212407 199028 NC_000014.9 scf177 99.96 True fake: scaffold gap size wrong estimation (local) 86122947 86125018 215291 213220 NC_000014.9 scf177 99.9 True fake: scaffold gap size wrong estimation (local) 86111058 86123038 229539 216058 NC_000014.9 scf177 99.76 True CONTIG scf177 229539 correct 81297993 81320437 23131 1 NC_000014.9 scf178 99.08 True fake: scaffold gap size wrong estimation (local) 81291810 81297857 30866 24075 NC_000014.9 scf178 99.92 True fake: scaffold gap size wrong estimation (local) 81285934 81291898 37512 31548 NC_000014.9 scf178 99.95 True fake: scaffold gap size wrong estimation (local) 81283711 81285998 40512 38225 NC_000014.9 scf178 99.96 True fake: scaffold gap size wrong estimation (local) 81281012 81283548 44037 41501 NC_000014.9 scf178 99.96 True fake: scaffold gap size wrong estimation (local) 81279527 81280867 46367 45027 NC_000014.9 scf178 99.78 True fake: scaffold gap size wrong estimation (local) 81258264 81279625 69253 47149 NC_000014.9 scf178 99.48 True fake: scaffold gap size wrong estimation (local) 81251836 81258127 77177 70099 NC_000014.9 scf178 98.39 True fake: scaffold gap size wrong estimation (local) 81249037 81250550 80692 79177 NC_000014.9 scf178 99.8 True fake: scaffold gap size wrong estimation (local) 81246302 81248515 84222 82009 NC_000014.9 scf178 99.86 True fake: scaffold gap size wrong estimation (local) 81245305 81246369 87592 86524 NC_000014.9 scf178 99.63 True fake: scaffold gap size wrong estimation (local) 81241785 81244005 91963 89730 NC_000014.9 scf178 99.19 True fake: scaffold gap size wrong estimation (local) 81228568 81241681 106695 92805 NC_000014.9 scf178 98.99 True fake: scaffold gap size wrong estimation (local) 81227021 81228656 109092 107457 NC_000014.9 scf178 100.0 True fake: scaffold gap size wrong estimation (local) 81226307 81226839 111506 110974 NC_000014.9 scf178 100.0 True local misassembly 81225031 81225591 112067 111507 NC_000014.9 scf178 100.0 True fake: scaffold gap size wrong estimation (local) 81220943 81224982 117730 113697 NC_000014.9 scf178 99.83 True fake: scaffold gap size wrong estimation (local) 81215975 81220252 123435 119157 NC_000014.9 scf178 99.88 True fake: scaffold gap size wrong estimation (local) 81213943 81216047 126254 124244 NC_000014.9 scf178 95.53 True fake: scaffold gap size wrong estimation (local) 81213339 81214020 127774 127093 NC_000014.9 scf178 100.0 True indel: indel (<= 5bp) 81211897 81213338 129217 127776 NC_000014.9 scf178 100.0 True fake: scaffold gap size wrong estimation (local) 81210618 81211873 131445 130190 NC_000014.9 scf178 99.84 True local misassembly 81209303 81210016 132467 131754 NC_000014.9 scf178 99.86 True fake: scaffold gap size wrong estimation (local) 81195515 81209402 148445 133771 NC_000014.9 scf178 97.87 True fake: scaffold gap size wrong estimation (local) 81193265 81195602 151523 149186 NC_000014.9 scf178 99.87 True fake: scaffold gap size wrong estimation (local) 81174584 81193362 173360 152292 NC_000014.9 scf178 99.57 True fake: scaffold gap size wrong estimation (local) 81167371 81174666 181338 174043 NC_000014.9 scf178 99.9 True fake: scaffold gap size wrong estimation (local) 81164819 81167465 184670 182024 NC_000014.9 scf178 99.96 True fake: scaffold gap size wrong estimation (local) 81163929 81164905 186289 185313 NC_000014.9 scf178 100.0 True fake: scaffold gap size wrong estimation (local) 81160873 81163972 190238 187139 NC_000014.9 scf178 99.94 True fake: scaffold gap size wrong estimation (local) 81159343 81160751 192616 191208 NC_000014.9 scf178 100.0 True fake: scaffold gap size wrong estimation (local) 81151977 81159085 200773 193667 NC_000014.9 scf178 99.87 True fake: scaffold gap size wrong estimation (local) 81149122 81152070 204375 201427 NC_000014.9 scf178 99.93 True fake: scaffold gap size wrong estimation (local) 81145770 81149215 208503 205058 NC_000014.9 scf178 99.94 True fake: scaffold gap size wrong estimation (local) 81142607 81145866 212433 209174 NC_000014.9 scf178 99.88 True fake: scaffold gap size wrong estimation (local) 81134247 81140733 221551 215066 NC_000014.9 scf178 99.92 True fake: scaffold gap size wrong estimation (local) 81130976 81134338 225584 222222 NC_000014.9 scf178 99.94 True fake: scaffold gap size wrong estimation (local) 81129189 81130744 228085 226515 NC_000014.9 scf178 98.92 True fake: scaffold gap size wrong estimation (local) 81122617 81129384 235553 228757 NC_000014.9 scf178 99.43 True fake: scaffold gap size wrong estimation (local) 81122176 81122713 236637 236100 NC_000014.9 scf178 99.44 True fake: scaffold gap size wrong estimation (local) 81120105 81121972 239808 237911 NC_000014.9 scf178 98.1 True CONTIG scf178 239808 correct 33078491 33089492 14295 1737 NC_000014.9 scf179 95.6 True fake: scaffold gap size wrong estimation (local) 33074383 33078586 19798 15595 NC_000014.9 scf179 100.0 True fake: scaffold gap size wrong estimation (local) 33070570 33074476 24348 20442 NC_000014.9 scf179 99.97 True fake: scaffold gap size wrong estimation (local) 33051951 33070656 44487 25032 NC_000014.9 scf179 99.85 True fake: scaffold gap size wrong estimation (local) 33051239 33052050 46179 45368 NC_000014.9 scf179 100.0 True local misassembly 33049419 33051037 47798 46180 NC_000014.9 scf179 100.0 True fake: scaffold gap size wrong estimation (local) 33033320 33049505 65603 48635 NC_000014.9 scf179 99.98 True fake: scaffold gap size wrong estimation (local) 33020811 33033410 79423 66245 NC_000014.9 scf179 97.89 True fake: scaffold gap size wrong estimation (local) 32999383 33020880 103138 80184 NC_000014.9 scf179 99.2 True fake: scaffold gap size wrong estimation (local) 32997721 32999276 105634 104079 NC_000014.9 scf179 99.87 True fake: scaffold gap size wrong estimation (local) 32994693 32997198 109432 106927 NC_000014.9 scf179 99.96 True fake: scaffold gap size wrong estimation (local) 32992883 32994787 112135 110231 NC_000014.9 scf179 99.84 True fake: scaffold gap size wrong estimation (local) 32983881 32992982 122737 112871 NC_000014.9 scf179 99.9 True fake: scaffold gap size wrong estimation (local) 32975821 32983975 131562 123389 NC_000014.9 scf179 99.71 True fake: scaffold gap size wrong estimation (local) 32972162 32975896 136025 132275 NC_000014.9 scf179 99.47 True fake: scaffold gap size wrong estimation (local) 32966778 32971976 142137 136976 NC_000014.9 scf179 99.04 True fake: scaffold gap size wrong estimation (local) 32962711 32966424 147830 143165 NC_000014.9 scf179 99.95 True fake: scaffold gap size wrong estimation (local) 32957524 32962588 153827 148765 NC_000014.9 scf179 99.84 True fake: scaffold gap size wrong estimation (local) 32943879 32957606 168202 154477 NC_000014.9 scf179 99.89 True fake: scaffold gap size wrong estimation (local) 32939596 32943765 174123 169108 NC_000014.9 scf179 99.59 True fake: scaffold gap size wrong estimation (local) 32936247 32938476 178208 175980 NC_000014.9 scf179 99.87 True fake: scaffold gap size wrong estimation (local) 32934863 32936304 182013 180572 NC_000014.9 scf179 97.85 True fake: scaffold gap size wrong estimation (local) 32923218 32934414 194540 183346 NC_000014.9 scf179 99.7 True fake: scaffold gap size wrong estimation (local) 32922378 32923314 196224 195289 NC_000014.9 scf179 99.47 True local misassembly 32917596 32922014 200757 196301 NC_000014.9 scf179 98.86 True fake: scaffold gap size wrong estimation (local) 32910480 32917417 209769 201891 NC_000014.9 scf179 99.55 True fake: scaffold gap size wrong estimation (local) 32907113 32910533 213915 210497 NC_000014.9 scf179 99.65 True fake: scaffold gap size wrong estimation (local) 32904824 32907036 217019 214807 NC_000014.9 scf179 99.86 True fake: scaffold gap size wrong estimation (local) 32902119 32904916 220556 217759 NC_000014.9 scf179 99.86 True fake: scaffold gap size wrong estimation (local) 32899161 32902213 224330 221276 NC_000014.9 scf179 99.9 True fake: scaffold gap size wrong estimation (local) 32890993 32899206 233326 225096 NC_000014.9 scf179 99.76 True fake: scaffold gap size wrong estimation (local) 32883127 32890622 241944 234449 NC_000014.9 scf179 99.92 True fake: scaffold gap size wrong estimation (local) 32880270 32883225 245581 242626 NC_000014.9 scf179 99.97 True fake: scaffold gap size wrong estimation (local) 32871897 32879960 254671 246609 NC_000014.9 scf179 99.93 True fake: scaffold gap size wrong estimation (local) 32869209 32871961 258156 255404 NC_000014.9 scf179 99.93 True fake: scaffold gap size wrong estimation (local) 32858117 32869293 270724 258858 NC_000014.9 scf179 98.76 True fake: scaffold gap size wrong estimation (local) 32856969 32857730 272695 271934 NC_000014.9 scf179 100.0 True CONTIG scf179 272720 correct 38677009 38685861 1245 10088 NC_000014.9 scf180 99.89 True fake: scaffold gap size wrong estimation (local) 38686165 38713634 11089 39271 NC_000014.9 scf180 99.75 True CONTIG scf180 39271 correct 24756638 24762365 7134 1354 NC_000014.9 scf181 98.91 True fake: scaffold gap size wrong estimation (local) 24755828 24756327 8756 8257 NC_000014.9 scf181 99.8 True fake: scaffold gap size wrong estimation (local) 24751554 24753875 14008 11589 NC_000014.9 scf181 99.78 True fake: scaffold gap size wrong estimation (local) 24748114 24750636 18496 15974 NC_000014.9 scf181 99.96 True fake: scaffold gap size wrong estimation (local) 24739686 24748172 27706 19222 NC_000014.9 scf181 99.84 True fake: scaffold gap size wrong estimation (local) 24738349 24739360 30073 29062 NC_000014.9 scf181 100.0 True local misassembly 24737075 24738047 31046 30074 NC_000014.9 scf181 99.9 True fake: scaffold gap size wrong estimation (local) 24734140 24737172 35149 32118 NC_000014.9 scf181 99.64 True fake: scaffold gap size wrong estimation (local) 24732243 24734236 37885 35892 NC_000014.9 scf181 99.95 True fake: scaffold gap size wrong estimation (local) 24730018 24732334 41051 38735 NC_000014.9 scf181 100.0 True fake: scaffold gap size wrong estimation (local) 24719640 24730115 52989 41762 NC_000014.9 scf181 99.7 True indel: indel (> 5bp) 24697952 24719533 76119 53060 NC_000014.9 scf181 99.33 True fake: scaffold gap size wrong estimation (local) 24686119 24696222 90427 79562 NC_000014.9 scf181 99.97 True fake: scaffold gap size wrong estimation (local) 24676332 24685997 100963 91298 NC_000014.9 scf181 99.95 True fake: scaffold gap size wrong estimation (local) 24666713 24676396 111316 101633 NC_000014.9 scf181 99.97 True fake: scaffold gap size wrong estimation (local) 24658669 24666472 120162 112359 NC_000014.9 scf181 99.94 True fake: scaffold gap size wrong estimation (local) 24648606 24658759 131004 120851 NC_000014.9 scf181 99.9 True fake: scaffold gap size wrong estimation (local) 24645867 24648318 135861 133381 NC_000014.9 scf181 98.75 True fake: scaffold gap size wrong estimation (local) 24642751 24645953 139910 136664 NC_000014.9 scf181 98.55 True fake: scaffold gap size wrong estimation (local) 24639726 24642847 143668 140544 NC_000014.9 scf181 99.81 True fake: scaffold gap size wrong estimation (local) 24636654 24639823 147523 144354 NC_000014.9 scf181 99.87 True fake: scaffold gap size wrong estimation (local) 24634216 24636747 150766 148235 NC_000014.9 scf181 99.92 True fake: scaffold gap size wrong estimation (local) 24632416 24634306 153448 151558 NC_000014.9 scf181 99.84 True fake: scaffold gap size wrong estimation (local) 24631652 24632204 154287 153735 NC_000014.9 scf181 99.64 True fake: scaffold gap size wrong estimation (local) 24628858 24631726 158274 155410 NC_000014.9 scf181 99.51 True relocation, inconsistency = 47649500 72281227 72283903 158275 160951 NC_000014.9 scf181 99.93 True fake: scaffold gap size wrong estimation (local) 72283809 72289469 161777 168003 NC_000014.9 scf181 95.02 True fake: scaffold gap size wrong estimation (local) 72289376 72295101 168729 174457 NC_000014.9 scf181 99.77 True fake: scaffold gap size wrong estimation (local) 72295291 72297420 175499 177628 NC_000014.9 scf181 99.91 True fake: scaffold gap size wrong estimation (local) 72297673 72298453 178150 178930 NC_000014.9 scf181 100.0 True fake: scaffold gap size wrong estimation (local) 72298653 72316347 180080 198585 NC_000014.9 scf181 99.88 True fake: scaffold gap size wrong estimation (local) 72316899 72319447 199941 202489 NC_000014.9 scf181 99.88 True fake: scaffold gap size wrong estimation (local) 72319355 72324451 203257 209177 NC_000014.9 scf181 97.81 True fake: scaffold gap size wrong estimation (local) 72325412 72335595 209958 220140 NC_000014.9 scf181 99.86 True fake: scaffold gap size wrong estimation (local) 72335497 72342742 220789 228467 NC_000014.9 scf181 97.87 True fake: scaffold gap size wrong estimation (local) 72342654 72354005 229352 242441 NC_000014.9 scf181 99.44 True fake: scaffold gap size wrong estimation (local) 72354846 72355435 244091 244680 NC_000014.9 scf181 99.83 True indel: indel (> 5bp) 72355512 72356244 244681 245413 NC_000014.9 scf181 100.0 True fake: scaffold gap size wrong estimation (local) 72356156 72359837 246711 250392 NC_000014.9 scf181 99.62 True fake: scaffold gap size wrong estimation (local) 72359781 72360413 251080 251712 NC_000014.9 scf181 99.68 True fake: scaffold gap size wrong estimation (local) 72360521 72361084 251964 252527 NC_000014.9 scf181 99.82 True local misassembly 72361215 72362349 252528 253662 NC_000014.9 scf181 99.82 True fake: scaffold gap size wrong estimation (local) 72362268 72371744 254307 263782 NC_000014.9 scf181 99.83 True fake: scaffold gap size wrong estimation (local) 72371668 72387446 264442 280216 NC_000014.9 scf181 99.71 True fake: scaffold gap size wrong estimation (local) 72387363 72390082 281030 283749 NC_000014.9 scf181 99.96 True fake: scaffold gap size wrong estimation (local) 72390331 72395631 284751 291000 NC_000014.9 scf181 99.94 True CONTIG scf181 291000 misassembled 27462396 27490806 1 29190 NC_000014.9 scf182 99.58 True fake: scaffold gap size wrong estimation (local) 27490637 27492718 29907 32024 NC_000014.9 scf182 97.93 True fake: scaffold gap size wrong estimation (local) 27493918 27494488 34230 34800 NC_000014.9 scf182 100.0 True CONTIG scf182 34826 correct 43376202 43378850 1 2651 NC_000014.9 scf183 99.85 True fake: scaffold gap size wrong estimation (local) 43378763 43387050 3358 12158 NC_000014.9 scf183 95.62 True fake: scaffold gap size wrong estimation (local) 43386992 43389270 13093 15371 NC_000014.9 scf183 99.87 True fake: scaffold gap size wrong estimation (local) 43389458 43391347 16347 18233 NC_000014.9 scf183 99.84 True fake: scaffold gap size wrong estimation (local) 43392779 43398689 20323 26239 NC_000014.9 scf183 99.75 True fake: scaffold gap size wrong estimation (local) 43398595 43405639 26855 33898 NC_000014.9 scf183 99.93 True fake: scaffold gap size wrong estimation (local) 43406280 43423907 35294 53664 NC_000014.9 scf183 99.68 True fake: scaffold gap size wrong estimation (local) 43423809 43425973 54362 56526 NC_000014.9 scf183 100.0 True fake: scaffold gap size wrong estimation (local) 43426359 43427779 57762 59194 NC_000014.9 scf183 99.16 True fake: scaffold gap size wrong estimation (local) 43428955 43437451 61108 69521 NC_000014.9 scf183 98.98 True fake: scaffold gap size wrong estimation (local) 43437352 43439972 70193 72735 NC_000014.9 scf183 96.84 True fake: scaffold gap size wrong estimation (local) 43440633 43441824 74121 75312 NC_000014.9 scf183 100.0 True local misassembly 43439979 43440716 75313 76050 NC_000014.9 scf183 99.73 True fake: scaffold gap size wrong estimation (local) 43441723 43459477 77969 96491 NC_000014.9 scf183 99.48 True fake: scaffold gap size wrong estimation (local) 43459384 43460365 97082 98063 NC_000014.9 scf183 100.0 True local misassembly 43460524 43461308 98064 98848 NC_000014.9 scf183 100.0 True fake: scaffold gap size wrong estimation (local) 43461460 43469373 99745 108398 NC_000014.9 scf183 99.91 True fake: scaffold gap size wrong estimation (local) 43469482 43473358 109264 113132 NC_000014.9 scf183 99.74 True fake: scaffold gap size wrong estimation (local) 43473263 43488896 113796 129429 NC_000014.9 scf183 99.92 True fake: scaffold gap size wrong estimation (local) 43489249 43490998 130676 132425 NC_000014.9 scf183 99.89 True local misassembly 43491255 43491812 132426 132983 NC_000014.9 scf183 99.46 True CONTIG scf183 132983 correct 79132031 79138471 1 7264 NC_000014.9 scf184 99.67 True fake: scaffold gap size wrong estimation (local) 79138373 79149743 7926 19294 NC_000014.9 scf184 99.78 True fake: scaffold gap size wrong estimation (local) 79149646 79162227 19958 32536 NC_000014.9 scf184 99.86 True fake: scaffold gap size wrong estimation (local) 79162629 79174992 33693 46054 NC_000014.9 scf184 97.92 True fake: scaffold gap size wrong estimation (local) 79175161 79188818 47311 61589 NC_000014.9 scf184 99.06 True fake: scaffold gap size wrong estimation (local) 79189529 79192815 63032 66318 NC_000014.9 scf184 99.88 True fake: scaffold gap size wrong estimation (local) 79192946 79200576 67249 74877 NC_000014.9 scf184 99.93 True fake: scaffold gap size wrong estimation (local) 79200715 79209178 75723 84183 NC_000014.9 scf184 99.93 True fake: scaffold gap size wrong estimation (local) 79209099 79217163 84858 92920 NC_000014.9 scf184 99.93 True fake: scaffold gap size wrong estimation (local) 79217088 79220861 93571 97348 NC_000014.9 scf184 99.76 True fake: scaffold gap size wrong estimation (local) 79221045 79221842 98031 98828 NC_000014.9 scf184 100.0 True fake: scaffold gap size wrong estimation (local) 79221756 79226891 99600 104768 NC_000014.9 scf184 99.01 True fake: scaffold gap size wrong estimation (local) 79226825 79242056 105511 121393 NC_000014.9 scf184 99.19 True fake: scaffold gap size wrong estimation (local) 79241961 79257370 121999 137408 NC_000014.9 scf184 99.98 True fake: scaffold gap size wrong estimation (local) 79257536 79259812 139562 141838 NC_000014.9 scf184 100.0 True fake: scaffold gap size wrong estimation (local) 79259714 79261639 142635 144560 NC_000014.9 scf184 99.95 True fake: scaffold gap size wrong estimation (local) 79261543 79264606 145320 148379 NC_000014.9 scf184 99.87 True fake: scaffold gap size wrong estimation (local) 79264519 79267566 149098 152086 NC_000014.9 scf184 98.06 True fake: scaffold gap size wrong estimation (local) 79267659 79269131 153049 154521 NC_000014.9 scf184 100.0 True fake: scaffold gap size wrong estimation (local) 79269229 79272940 155352 159063 NC_000014.9 scf184 100.0 True fake: scaffold gap size wrong estimation (local) 79273174 79281019 161021 168809 NC_000014.9 scf184 98.46 True fake: scaffold gap size wrong estimation (local) 79280960 79284289 169487 172848 NC_000014.9 scf184 99.02 True fake: scaffold gap size wrong estimation (local) 79284394 79296760 173650 186819 NC_000014.9 scf184 99.49 True fake: scaffold gap size wrong estimation (local) 79297061 79298867 187922 189728 NC_000014.9 scf184 100.0 True fake: scaffold gap size wrong estimation (local) 79299175 79309020 190815 200659 NC_000014.9 scf184 99.99 True CONTIG scf184 200659 correct 61360255 61409724 53299 1 NC_000014.9 scf185 99.64 True fake: scaffold gap size wrong estimation (local) 61356866 61360346 57473 53993 NC_000014.9 scf185 99.86 True fake: scaffold gap size wrong estimation (local) 61349738 61356958 65403 58175 NC_000014.9 scf185 99.82 True fake: scaffold gap size wrong estimation (local) 61340382 61349826 76901 66075 NC_000014.9 scf185 98.31 True fake: scaffold gap size wrong estimation (local) 61339623 61340207 78381 77797 NC_000014.9 scf185 100.0 True fake: scaffold gap size wrong estimation (local) 61337162 61339466 80960 78656 NC_000014.9 scf185 100.0 True relocation, inconsistency = 70238 61409705 61414370 80961 85623 NC_000014.9 scf185 99.83 True fake: scaffold gap size wrong estimation (local) 61414275 61425673 86362 98585 NC_000014.9 scf185 99.64 True fake: scaffold gap size wrong estimation (local) 61425579 61428077 99301 101802 NC_000014.9 scf185 99.88 True fake: scaffold gap size wrong estimation (local) 61427989 61430877 102543 105443 NC_000014.9 scf185 99.55 True fake: scaffold gap size wrong estimation (local) 61430976 61449954 106358 127516 NC_000014.9 scf185 98.79 True fake: scaffold gap size wrong estimation (local) 61449891 61455122 128190 133419 NC_000014.9 scf185 99.9 True fake: scaffold gap size wrong estimation (local) 61455206 61464709 134292 143795 NC_000014.9 scf185 99.93 True fake: scaffold gap size wrong estimation (local) 61464859 61487922 144733 169286 NC_000014.9 scf185 99.25 True fake: scaffold gap size wrong estimation (local) 61488154 61498087 170260 180193 NC_000014.9 scf185 99.71 True fake: scaffold gap size wrong estimation (local) 61497996 61514367 180919 198648 NC_000014.9 scf185 98.73 True fake: scaffold gap size wrong estimation (local) 61514311 61519318 199315 204322 NC_000014.9 scf185 99.94 True fake: scaffold gap size wrong estimation (local) 61519233 61529515 205054 216197 NC_000014.9 scf185 99.14 True fake: scaffold gap size wrong estimation (local) 61529815 61565474 217281 255411 NC_000014.9 scf185 99.77 True fake: scaffold gap size wrong estimation (local) 61565589 61579325 256310 271571 NC_000014.9 scf185 99.13 True fake: scaffold gap size wrong estimation (local) 61579655 61584037 272692 277069 NC_000014.9 scf185 99.89 True relocation, inconsistency = 9617363 71201401 71203979 279650 277070 NC_000014.9 scf185 99.81 True fake: scaffold gap size wrong estimation (local) 71194968 71201308 286878 280544 NC_000014.9 scf185 99.78 True fake: scaffold gap size wrong estimation (local) 71189911 71195064 292690 287537 NC_000014.9 scf185 99.77 True fake: scaffold gap size wrong estimation (local) 71185374 71190007 297955 293324 NC_000014.9 scf185 99.68 True fake: scaffold gap size wrong estimation (local) 71183802 71185049 300335 299087 NC_000014.9 scf185 99.84 True fake: scaffold gap size wrong estimation (local) 71178499 71183724 306466 301242 NC_000014.9 scf185 99.81 True fake: scaffold gap size wrong estimation (local) 71175333 71177276 310332 308389 NC_000014.9 scf185 99.9 True fake: scaffold gap size wrong estimation (local) 71173626 71175421 314390 312595 NC_000014.9 scf185 99.78 True fake: scaffold gap size wrong estimation (local) 71168607 71173151 321151 315754 NC_000014.9 scf185 99.76 True fake: scaffold gap size wrong estimation (local) 71165823 71168016 325143 322691 NC_000014.9 scf185 95.85 True fake: scaffold gap size wrong estimation (local) 71158751 71165920 333970 326162 NC_000014.9 scf185 97.43 True fake: scaffold gap size wrong estimation (local) 71156462 71158836 337119 334836 NC_000014.9 scf185 95.49 True fake: scaffold gap size wrong estimation (local) 71147981 71156085 346360 338256 NC_000014.9 scf185 99.64 True fake: scaffold gap size wrong estimation (local) 71144890 71147736 350170 347461 NC_000014.9 scf185 95.12 True fake: scaffold gap size wrong estimation (local) 71138738 71144989 357912 350897 NC_000014.9 scf185 97.9 True fake: scaffold gap size wrong estimation (local) 71129801 71138949 368481 358529 NC_000014.9 scf185 99.62 True CONTIG scf185 368481 misassembled 62288604 62290218 1 1612 NC_000014.9 scf186 99.57 True fake: scaffold gap size wrong estimation (local) 62290136 62305779 2327 19506 NC_000014.9 scf186 99.45 True fake: scaffold gap size wrong estimation (local) 62307754 62325953 22049 40940 NC_000014.9 scf186 99.59 True CONTIG scf186 42055 correct 41215070 41216401 41 1383 NC_000014.9 scf187 99.18 True fake: scaffold gap size wrong estimation (local) 41216321 41218445 2369 4493 NC_000014.9 scf187 100.0 True fake: scaffold gap size wrong estimation (local) 41218684 41231768 5534 20175 NC_000014.9 scf187 99.88 True fake: scaffold gap size wrong estimation (local) 41231669 41235380 20861 24572 NC_000014.9 scf187 99.84 True fake: scaffold gap size wrong estimation (local) 41235293 41239478 25289 29474 NC_000014.9 scf187 99.88 True fake: scaffold gap size wrong estimation (local) 41239381 41243348 30899 34892 NC_000014.9 scf187 99.27 True fake: scaffold gap size wrong estimation (local) 41243267 41246942 35627 39302 NC_000014.9 scf187 99.86 True fake: scaffold gap size wrong estimation (local) 41246849 41250955 39971 44176 NC_000014.9 scf187 97.78 True fake: scaffold gap size wrong estimation (local) 41250856 41264235 44974 59050 NC_000014.9 scf187 99.33 True fake: scaffold gap size wrong estimation (local) 41264141 41271425 59744 67028 NC_000014.9 scf187 99.89 True fake: scaffold gap size wrong estimation (local) 41271368 41290431 67829 87954 NC_000014.9 scf187 98.71 True fake: scaffold gap size wrong estimation (local) 41291204 41306406 89469 104670 NC_000014.9 scf187 99.91 True fake: scaffold gap size wrong estimation (local) 41306319 41311923 105362 111003 NC_000014.9 scf187 99.27 True fake: scaffold gap size wrong estimation (local) 41311837 41315908 111587 115614 NC_000014.9 scf187 98.87 True fake: scaffold gap size wrong estimation (local) 41315833 41323285 116351 123795 NC_000014.9 scf187 99.77 True fake: scaffold gap size wrong estimation (local) 41323201 41324542 124499 125840 NC_000014.9 scf187 99.93 True fake: scaffold gap size wrong estimation (local) 41324733 41327254 127238 129975 NC_000014.9 scf187 95.55 True fake: scaffold gap size wrong estimation (local) 41327558 41328116 130972 131530 NC_000014.9 scf187 100.0 True fake: scaffold gap size wrong estimation (local) 41328404 41328958 132009 132563 NC_000014.9 scf187 99.82 True local misassembly 41329123 41330021 132564 133462 NC_000014.9 scf187 99.67 True fake: scaffold gap size wrong estimation (local) 41329923 41330742 134378 135197 NC_000014.9 scf187 99.76 True local misassembly 41331044 41332574 135295 136825 NC_000014.9 scf187 99.87 True fake: scaffold gap size wrong estimation (local) 41332482 41335277 137665 140475 NC_000014.9 scf187 99.15 True CONTIG scf187 140475 correct 71877864 71881257 1 3335 NC_000014.9 scf188 98.08 True fake: scaffold gap size wrong estimation (local) 71881160 71887555 4035 11263 NC_000014.9 scf188 99.75 True fake: scaffold gap size wrong estimation (local) 71888339 71890393 11965 14011 NC_000014.9 scf188 99.22 True fake: scaffold gap size wrong estimation (local) 71890531 71910125 15244 35615 NC_000014.9 scf188 99.24 True fake: scaffold gap size wrong estimation (local) 71910072 71918103 36354 45162 NC_000014.9 scf188 99.89 True fake: scaffold gap size wrong estimation (local) 71918198 71930810 46113 60307 NC_000014.9 scf188 98.13 True fake: scaffold gap size wrong estimation (local) 71930713 71938325 60992 69443 NC_000014.9 scf188 99.79 True fake: scaffold gap size wrong estimation (local) 71938942 71953986 70823 86576 NC_000014.9 scf188 99.34 True fake: scaffold gap size wrong estimation (local) 71953895 71956355 87270 89731 NC_000014.9 scf188 99.92 True fake: scaffold gap size wrong estimation (local) 71956259 71969173 90825 104658 NC_000014.9 scf188 99.57 True fake: scaffold gap size wrong estimation (local) 71969130 71971995 105387 108255 NC_000014.9 scf188 99.86 True fake: scaffold gap size wrong estimation (local) 71971907 71976357 108955 113422 NC_000014.9 scf188 99.6 True CONTIG scf188 113422 correct 46514625 46531437 7 17548 NC_000014.9 scf189 99.37 True fake: scaffold gap size wrong estimation (local) 46532028 46532628 19318 19918 NC_000014.9 scf189 100.0 True local misassembly 46532834 46533713 19919 20798 NC_000014.9 scf189 100.0 True fake: scaffold gap size wrong estimation (local) 46533831 46545806 21726 34640 NC_000014.9 scf189 97.51 True CONTIG scf189 34640 correct 81320431 81326015 1 5585 NC_000014.9 scf190 99.98 True fake: scaffold gap size wrong estimation (local) 81325938 81329225 6223 9510 NC_000014.9 scf190 99.97 True fake: scaffold gap size wrong estimation (local) 81329460 81347637 10594 31107 NC_000014.9 scf190 99.5 True fake: scaffold gap size wrong estimation (local) 81347907 81349864 32191 34148 NC_000014.9 scf190 99.64 True fake: scaffold gap size wrong estimation (local) 81349778 81354851 34784 39857 NC_000014.9 scf190 99.94 True fake: scaffold gap size wrong estimation (local) 81354794 81355835 40536 41577 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 81357885 81361236 44192 47543 NC_000014.9 scf190 99.91 True fake: scaffold gap size wrong estimation (local) 81361140 81365660 48461 53012 NC_000014.9 scf190 99.12 True fake: scaffold gap size wrong estimation (local) 81365561 81367511 53762 55712 NC_000014.9 scf190 99.69 True fake: scaffold gap size wrong estimation (local) 81367413 81371527 56372 60486 NC_000014.9 scf190 99.93 True fake: scaffold gap size wrong estimation (local) 81371446 81372250 61307 62111 NC_000014.9 scf190 100.0 True local misassembly 81372480 81377165 62112 67763 NC_000014.9 scf190 98.22 True fake: scaffold gap size wrong estimation (local) 81377073 81387998 68427 79352 NC_000014.9 scf190 99.91 True fake: not a misassembly (possible transposable element) 34015436 34017064 79353 80981 NC_000014.9 scf190 99.82 True fake: not a misassembly (possible transposable element) 81388894 81394523 81629 87258 NC_000014.9 scf190 99.88 True fake: scaffold gap size wrong estimation (local) 81394427 81396979 87887 90439 NC_000014.9 scf190 99.88 True fake: not a misassembly (possible transposable element) 34024145 34026414 90708 92977 NC_000014.9 scf190 99.78 True fake: not a misassembly (possible transposable element) 81398697 81400497 92979 94779 NC_000014.9 scf190 100.0 True fake: not a misassembly (possible transposable element) 34027589 34033613 95125 101147 NC_000014.9 scf190 99.87 True fake: not a misassembly (possible transposable element) 81406142 81408238 101148 103244 NC_000014.9 scf190 99.9 True fake: not a misassembly (possible transposable element) 34034976 34036933 103245 105202 NC_000014.9 scf190 100.0 True fake: not a misassembly (possible transposable element) 81409385 81410307 105203 106123 NC_000014.9 scf190 99.78 True fake: not a misassembly (possible transposable element) 34036995 34039355 106130 108490 NC_000014.9 scf190 99.87 True fake: not a misassembly (possible transposable element) 81412013 81413225 108491 109703 NC_000014.9 scf190 99.75 True fake: not a misassembly (possible transposable element) 34039815 34046415 109704 116304 NC_000014.9 scf190 99.89 True fake: not a misassembly (possible transposable element) 81418998 81428726 116305 126032 NC_000014.9 scf190 99.95 True fake: not a misassembly (possible transposable element) 34052610 34054829 126033 128252 NC_000014.9 scf190 99.91 True fake: not a misassembly (possible transposable element) 81430151 81431777 128253 129879 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 81431778 81436193 131449 135864 NC_000014.9 scf190 100.0 True fake: not a misassembly (possible transposable element) 34059677 34062036 135865 138224 NC_000014.9 scf190 99.92 True fake: not a misassembly (possible transposable element) 81438133 81439609 138408 139884 NC_000014.9 scf190 100.0 True fake: not a misassembly (possible transposable element) 34062945 34065148 139886 142042 NC_000014.9 scf190 97.64 True fake: not a misassembly (possible transposable element) 81440906 81441423 142043 142560 NC_000014.9 scf190 99.81 True relocation, scaffold gap is present, inconsistency = -47376608 34065070 34073715 142815 151460 NC_000014.9 scf190 99.87 True fake: not a misassembly (possible transposable element) 81448133 81452199 151674 155738 NC_000014.9 scf190 99.9 True fake: not a misassembly (possible transposable element) 34076700 34077688 155883 156871 NC_000014.9 scf190 99.7 True fake: not a misassembly (possible transposable element) 81452561 81455781 156872 160092 NC_000014.9 scf190 99.78 True fake: not a misassembly (possible transposable element) 34079868 34088489 160136 168757 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 34088390 34092642 169451 173703 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 34092879 34094943 174721 176785 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 34094865 34105819 177504 188460 NC_000014.9 scf190 99.91 True fake: scaffold gap size wrong estimation (local) 34105730 34122714 189167 206910 NC_000014.9 scf190 99.65 True fake: scaffold gap size wrong estimation (local) 34122619 34130910 207594 216663 NC_000014.9 scf190 99.56 True fake: scaffold gap size wrong estimation (local) 34130845 34141965 217395 229209 NC_000014.9 scf190 98.58 True fake: scaffold gap size wrong estimation (local) 34143238 34143874 231287 231923 NC_000014.9 scf190 100.0 True fake: scaffold gap size wrong estimation (local) 34145384 34150519 236400 241594 NC_000014.9 scf190 98.86 True CONTIG scf190 244301 misassembled 28410244 28412989 2746 1 NC_000014.9 scf191 99.89 True fake: scaffold gap size wrong estimation (local) 28409341 28410341 4632 3632 NC_000014.9 scf191 100.0 True local misassembly 28405730 28409016 7936 4650 NC_000014.9 scf191 99.24 True fake: scaffold gap size wrong estimation (local) 28404906 28405729 9572 8749 NC_000014.9 scf191 99.39 True indel: indel (> 5bp) 28402848 28404832 11557 9573 NC_000014.9 scf191 100.0 True fake: scaffold gap size wrong estimation (local) 28401418 28402237 13003 12184 NC_000014.9 scf191 99.76 True fake: scaffold gap size wrong estimation (local) 28391856 28401517 23412 13726 NC_000014.9 scf191 99.65 True fake: scaffold gap size wrong estimation (local) 28389418 28391940 26603 24077 NC_000014.9 scf191 99.84 True fake: scaffold gap size wrong estimation (local) 28374835 28389513 41875 27261 NC_000014.9 scf191 99.43 True fake: scaffold gap size wrong estimation (local) 28358402 28374922 59016 42554 NC_000014.9 scf191 99.57 True fake: scaffold gap size wrong estimation (local) 28337491 28358128 83100 60110 NC_000014.9 scf191 99.65 True fake: scaffold gap size wrong estimation (local) 28335334 28337565 86090 83851 NC_000014.9 scf191 99.64 True fake: scaffold gap size wrong estimation (local) 28332479 28335429 89744 86794 NC_000014.9 scf191 99.93 True fake: scaffold gap size wrong estimation (local) 28323387 28331059 99608 91936 NC_000014.9 scf191 99.86 True fake: scaffold gap size wrong estimation (local) 28318428 28323479 105324 100266 NC_000014.9 scf191 99.74 True CONTIG scf191 105324 correct 94148708 94149356 1 649 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94149301 94150518 1778 2995 NC_000014.9 scf192 99.92 True local misassembly 94151002 94152173 3315 4486 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94152386 94155261 5544 8419 NC_000014.9 scf192 99.9 True fake: scaffold gap size wrong estimation (local) 94155173 94159109 9100 13036 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94159024 94173980 13759 28717 NC_000014.9 scf192 99.91 True fake: scaffold gap size wrong estimation (local) 94174979 94187175 30424 42620 NC_000014.9 scf192 99.98 True fake: scaffold gap size wrong estimation (local) 94187079 94190067 43690 46708 NC_000014.9 scf192 99.01 True fake: scaffold gap size wrong estimation (local) 94189972 94196545 47428 54049 NC_000014.9 scf192 99.18 True fake: scaffold gap size wrong estimation (local) 94196472 94199789 54768 58085 NC_000014.9 scf192 99.88 True fake: scaffold gap size wrong estimation (local) 94199691 94203002 58784 62095 NC_000014.9 scf192 99.91 True fake: scaffold gap size wrong estimation (local) 94202915 94217934 62820 77839 NC_000014.9 scf192 99.89 True fake: scaffold gap size wrong estimation (local) 94217849 94218462 78502 79115 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94219110 94221765 79664 82319 NC_000014.9 scf192 99.92 True fake: scaffold gap size wrong estimation (local) 94221670 94223461 83076 84867 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94223943 94224972 86338 87367 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94225455 94235410 88681 99496 NC_000014.9 scf192 99.74 True fake: scaffold gap size wrong estimation (local) 94235602 94239338 100461 104197 NC_000014.9 scf192 100.0 True fake: scaffold gap size wrong estimation (local) 94239287 94269761 104918 136957 NC_000014.9 scf192 99.87 True fake: scaffold gap size wrong estimation (local) 94269663 94270921 138020 139278 NC_000014.9 scf192 99.92 True fake: scaffold gap size wrong estimation (local) 94270823 94288012 140162 158213 NC_000014.9 scf192 99.5 True fake: scaffold gap size wrong estimation (local) 94287922 94297759 158925 169518 NC_000014.9 scf192 99.58 True fake: scaffold gap size wrong estimation (local) 94297661 94300881 170311 173402 NC_000014.9 scf192 95.9 True fake: scaffold gap size wrong estimation (local) 94302381 94307040 175533 180213 NC_000014.9 scf192 99.4 True fake: scaffold gap size wrong estimation (local) 94306941 94308064 181456 182615 NC_000014.9 scf192 96.47 True fake: scaffold gap size wrong estimation (local) 94309273 94311697 183993 186417 NC_000014.9 scf192 99.92 True fake: scaffold gap size wrong estimation (local) 94311848 94322480 187350 197985 NC_000014.9 scf192 99.85 True fake: scaffold gap size wrong estimation (local) 94322382 94346079 198740 223749 NC_000014.9 scf192 99.52 True fake: scaffold gap size wrong estimation (local) 94348051 94359627 227578 239154 NC_000014.9 scf192 99.78 True fake: scaffold gap size wrong estimation (local) 94359529 94361614 239831 241911 NC_000014.9 scf192 99.71 True CONTIG scf192 241911 correct 67086902 67089157 2273 19 NC_000014.9 scf193 99.91 True fake: scaffold gap size wrong estimation (local) 67071488 67086441 18431 3478 NC_000014.9 scf193 99.99 True fake: scaffold gap size wrong estimation (local) 67069389 67070333 21261 20317 NC_000014.9 scf193 100.0 True fake: scaffold gap size wrong estimation (local) 67066967 67068917 24674 22724 NC_000014.9 scf193 100.0 True fake: scaffold gap size wrong estimation (local) 67065657 67067064 27644 26196 NC_000014.9 scf193 97.17 True CONTIG scf193 30435 correct 56636573 56640461 3889 1 NC_000014.9 scf194 99.72 True fake: scaffold gap size wrong estimation (local) 56631722 56636660 9497 4561 NC_000014.9 scf194 99.84 True fake: scaffold gap size wrong estimation (local) 56629058 56631819 12992 10231 NC_000014.9 scf194 100.0 True fake: scaffold gap size wrong estimation (local) 56614224 56629155 28608 13678 NC_000014.9 scf194 99.95 True fake: scaffold gap size wrong estimation (local) 56596770 56614126 48051 29494 NC_000014.9 scf194 99.74 True fake: scaffold gap size wrong estimation (local) 56594067 56596407 51507 49167 NC_000014.9 scf194 99.91 True fake: scaffold gap size wrong estimation (local) 56583998 56593698 62329 52629 NC_000014.9 scf194 99.96 True fake: scaffold gap size wrong estimation (local) 56575554 56584059 71523 63029 NC_000014.9 scf194 99.81 True fake: scaffold gap size wrong estimation (local) 56568891 56575451 80820 72430 NC_000014.9 scf194 99.13 True fake: scaffold gap size wrong estimation (local) 56564824 56568989 85669 81506 NC_000014.9 scf194 99.93 True fake: scaffold gap size wrong estimation (local) 56559671 56564277 92224 86892 NC_000014.9 scf194 95.81 True fake: scaffold gap size wrong estimation (local) 56550095 56559757 104720 94246 NC_000014.9 scf194 99.9 True fake: scaffold gap size wrong estimation (local) 56546122 56550194 109435 105363 NC_000014.9 scf194 100.0 True fake: scaffold gap size wrong estimation (local) 56540432 56546195 116663 110127 NC_000014.9 scf194 99.65 True fake: scaffold gap size wrong estimation (local) 56535395 56540530 122516 117382 NC_000014.9 scf194 99.77 True fake: scaffold gap size wrong estimation (local) 56529649 56535484 129027 123192 NC_000014.9 scf194 99.91 True fake: scaffold gap size wrong estimation (local) 56515265 56529501 144162 129930 NC_000014.9 scf194 99.85 True fake: scaffold gap size wrong estimation (local) 56513053 56515351 147226 144928 NC_000014.9 scf194 100.0 True fake: scaffold gap size wrong estimation (local) 56511305 56513146 149854 148013 NC_000014.9 scf194 100.0 True fake: scaffold gap size wrong estimation (local) 56504094 56511398 157858 150569 NC_000014.9 scf194 99.73 True fake: scaffold gap size wrong estimation (local) 56499942 56503907 162738 158773 NC_000014.9 scf194 99.92 True fake: scaffold gap size wrong estimation (local) 56486649 56499848 177524 163538 NC_000014.9 scf194 99.59 True fake: scaffold gap size wrong estimation (local) 56480652 56486740 185105 178212 NC_000014.9 scf194 99.33 True fake: scaffold gap size wrong estimation (local) 56475668 56480749 191503 185776 NC_000014.9 scf194 95.4 True fake: scaffold gap size wrong estimation (local) 56462382 56475465 206385 192540 NC_000014.9 scf194 99.76 True fake: scaffold gap size wrong estimation (local) 56460237 56462465 209368 207142 NC_000014.9 scf194 99.87 True CONTIG scf194 209368 correct 48454274 48481597 28773 1 NC_000014.9 scf195 99.65 True fake: scaffold gap size wrong estimation (local) 48448772 48453174 35006 30604 NC_000014.9 scf195 99.89 True fake: scaffold gap size wrong estimation (local) 48447677 48448863 36887 35701 NC_000014.9 scf195 100.0 True indel: indel (> 5bp) 48446048 48447254 38453 37247 NC_000014.9 scf195 100.0 True fake: scaffold gap size wrong estimation (local) 48440499 48444832 46484 40559 NC_000014.9 scf195 99.0 True fake: scaffold gap size wrong estimation (local) 48415767 48439212 73358 47473 NC_000014.9 scf195 99.03 True CONTIG scf195 73366 correct 70961637 70965533 1 4790 NC_000014.9 scf196 99.26 True fake: scaffold gap size wrong estimation (local) 70965660 70971154 5722 11228 NC_000014.9 scf196 99.76 True fake: scaffold gap size wrong estimation (local) 70971399 70974288 12409 15298 NC_000014.9 scf196 99.97 True fake: scaffold gap size wrong estimation (local) 70974245 70985484 15963 27992 NC_000014.9 scf196 99.24 True fake: scaffold gap size wrong estimation (local) 70985427 70989555 28755 32883 NC_000014.9 scf196 99.98 True fake: scaffold gap size wrong estimation (local) 70989490 70993038 33598 37024 NC_000014.9 scf196 96.27 True fake: scaffold gap size wrong estimation (local) 70993169 70994985 38056 39861 NC_000014.9 scf196 99.28 True fake: scaffold gap size wrong estimation (local) 70994937 71000546 40661 46985 NC_000014.9 scf196 99.7 True fake: scaffold gap size wrong estimation (local) 71000749 71005940 48006 53200 NC_000014.9 scf196 99.88 True fake: scaffold gap size wrong estimation (local) 71006126 71008561 54172 56607 NC_000014.9 scf196 99.96 True fake: scaffold gap size wrong estimation (local) 71008657 71020204 57414 69805 NC_000014.9 scf196 99.76 True fake: scaffold gap size wrong estimation (local) 71020309 71020903 70935 71557 NC_000014.9 scf196 95.51 True fake: scaffold gap size wrong estimation (local) 71021123 71036898 72857 89433 NC_000014.9 scf196 99.47 True fake: scaffold gap size wrong estimation (local) 71039091 71041879 92144 94932 NC_000014.9 scf196 99.93 True fake: scaffold gap size wrong estimation (local) 71041784 71065841 95547 120809 NC_000014.9 scf196 99.64 True fake: scaffold gap size wrong estimation (local) 71066890 71073201 122583 129644 NC_000014.9 scf196 99.4 True fake: scaffold gap size wrong estimation (local) 71073110 71075011 130363 132264 NC_000014.9 scf196 99.95 True fake: scaffold gap size wrong estimation (local) 71074981 71079230 133035 137300 NC_000014.9 scf196 99.51 True fake: scaffold gap size wrong estimation (local) 71079133 71079961 138022 138850 NC_000014.9 scf196 99.88 True fake: scaffold gap size wrong estimation (local) 71081132 71082262 139778 140908 NC_000014.9 scf196 100.0 True fake: scaffold gap size wrong estimation (local) 71082263 71082913 141374 142024 NC_000014.9 scf196 99.85 True fake: scaffold gap size wrong estimation (local) 71083696 71095210 143876 155390 NC_000014.9 scf196 99.94 True fake: scaffold gap size wrong estimation (local) 71095117 71102511 156073 164127 NC_000014.9 scf196 95.34 True fake: scaffold gap size wrong estimation (local) 71102420 71105821 164872 168553 NC_000014.9 scf196 97.17 True fake: scaffold gap size wrong estimation (local) 71105749 71119444 169455 183889 NC_000014.9 scf196 99.89 True fake: scaffold gap size wrong estimation (local) 71119627 71123315 184848 188558 NC_000014.9 scf196 99.35 True fake: scaffold gap size wrong estimation (local) 71123219 71124313 189296 190390 NC_000014.9 scf196 100.0 True fake: scaffold gap size wrong estimation (local) 71124852 71125880 190722 191750 NC_000014.9 scf196 99.81 True fake: scaffold gap size wrong estimation (local) 71125972 71127033 192705 193766 NC_000014.9 scf196 100.0 True CONTIG scf196 197621 correct 34156066 34159558 1 3334 NC_000014.9 scf197 95.45 True fake: scaffold gap size wrong estimation (local) 34160339 34163569 4968 8198 NC_000014.9 scf197 99.97 True fake: scaffold gap size wrong estimation (local) 34163484 34170817 8912 16243 NC_000014.9 scf197 99.92 True fake: scaffold gap size wrong estimation (local) 34170726 34184705 16903 30885 NC_000014.9 scf197 99.83 True fake: scaffold gap size wrong estimation (local) 34184617 34185398 31503 32293 NC_000014.9 scf197 98.74 True fake: scaffold gap size wrong estimation (local) 34186588 34193273 34324 41010 NC_000014.9 scf197 99.97 True fake: scaffold gap size wrong estimation (local) 34195515 34197044 45875 47427 NC_000014.9 scf197 98.39 True fake: scaffold gap size wrong estimation (local) 34197036 34199214 48425 50603 NC_000014.9 scf197 100.0 True fake: scaffold gap size wrong estimation (local) 34199120 34204113 51328 56325 NC_000014.9 scf197 99.8 True fake: scaffold gap size wrong estimation (local) 34204277 34205276 57307 58305 NC_000014.9 scf197 99.6 True fake: scaffold gap size wrong estimation (local) 34205765 34221808 59127 75940 NC_000014.9 scf197 99.16 True fake: scaffold gap size wrong estimation (local) 34221747 34240326 76686 97114 NC_000014.9 scf197 99.73 True fake: scaffold gap size wrong estimation (local) 34240238 34245662 97759 103183 NC_000014.9 scf197 99.98 True fake: scaffold gap size wrong estimation (local) 34246024 34247452 104369 105800 NC_000014.9 scf197 99.44 True fake: scaffold gap size wrong estimation (local) 34248470 34250607 107544 109681 NC_000014.9 scf197 99.58 True fake: scaffold gap size wrong estimation (local) 34250511 34252019 111684 113192 NC_000014.9 scf197 99.67 True fake: scaffold gap size wrong estimation (local) 34251851 34259749 113909 122570 NC_000014.9 scf197 96.89 True fake: scaffold gap size wrong estimation (local) 34259655 34270027 123221 133592 NC_000014.9 scf197 99.89 True fake: scaffold gap size wrong estimation (local) 34269936 34273239 134301 137778 NC_000014.9 scf197 97.06 True fake: scaffold gap size wrong estimation (local) 34274127 34276135 139643 141651 NC_000014.9 scf197 99.85 True fake: scaffold gap size wrong estimation (local) 34278011 34278574 144261 144824 NC_000014.9 scf197 99.47 True CONTIG scf197 144824 correct 101722938 101723572 1 636 NC_000014.9 scf198 99.84 True fake: scaffold gap size wrong estimation (local) 101725664 101729284 3585 7229 NC_000014.9 scf198 99.01 True fake: scaffold gap size wrong estimation (local) 101729191 101730330 7976 9115 NC_000014.9 scf198 100.0 True fake: scaffold gap size wrong estimation (local) 101730236 101745088 9885 24752 NC_000014.9 scf198 99.87 True fake: scaffold gap size wrong estimation (local) 101746135 101746938 26588 27391 NC_000014.9 scf198 100.0 True fake: scaffold gap size wrong estimation (local) 101748886 101749632 30281 31042 NC_000014.9 scf198 98.03 True fake: scaffold gap size wrong estimation (local) 101749533 101750200 32868 33535 NC_000014.9 scf198 100.0 True local misassembly 101751468 101752062 33857 34451 NC_000014.9 scf198 100.0 True fake: scaffold gap size wrong estimation (local) 101751979 101760817 36151 44991 NC_000014.9 scf198 99.98 True fake: scaffold gap size wrong estimation (local) 101760824 101761583 45814 46573 NC_000014.9 scf198 100.0 True fake: scaffold gap size wrong estimation (local) 101761892 101782203 46793 71753 NC_000014.9 scf198 99.45 True fake: scaffold gap size wrong estimation (local) 101782630 101787578 73065 78013 NC_000014.9 scf198 99.98 True fake: scaffold gap size wrong estimation (local) 101787767 101789784 78981 80998 NC_000014.9 scf198 100.0 True CONTIG scf198 80998 correct 41671792 41673151 1360 1 NC_000014.9 scf199 100.0 True local misassembly 41670288 41671522 2595 1361 NC_000014.9 scf199 100.0 True fake: scaffold gap size wrong estimation (local) 41659752 41670147 13930 3535 NC_000014.9 scf199 99.99 True fake: scaffold gap size wrong estimation (local) 41655220 41659613 19235 14842 NC_000014.9 scf199 100.0 True fake: scaffold gap size wrong estimation (local) 41650180 41655319 25342 19935 NC_000014.9 scf199 97.63 True fake: scaffold gap size wrong estimation (local) 41645237 41650254 31075 26057 NC_000014.9 scf199 99.9 True fake: scaffold gap size wrong estimation (local) 41639951 41645335 37128 31744 NC_000014.9 scf199 99.93 True fake: scaffold gap size wrong estimation (local) 41632524 41640040 45274 37758 NC_000014.9 scf199 99.85 True fake: scaffold gap size wrong estimation (local) 41625176 41632617 53327 45886 NC_000014.9 scf199 99.93 True fake: scaffold gap size wrong estimation (local) 41610666 41625269 68607 53999 NC_000014.9 scf199 99.93 True fake: scaffold gap size wrong estimation (local) 41607239 41610727 72878 69374 NC_000014.9 scf199 99.46 True fake: scaffold gap size wrong estimation (local) 41604618 41606881 76390 74127 NC_000014.9 scf199 99.87 True fake: scaffold gap size wrong estimation (local) 41599990 41604712 81945 77183 NC_000014.9 scf199 99.1 True fake: scaffold gap size wrong estimation (local) 41597837 41599769 84738 82806 NC_000014.9 scf199 99.95 True fake: scaffold gap size wrong estimation (local) 41583505 41597928 101373 85439 NC_000014.9 scf199 99.73 True fake: scaffold gap size wrong estimation (local) 41575266 41582567 110374 103073 NC_000014.9 scf199 99.97 True fake: scaffold gap size wrong estimation (local) 41570324 41575149 116820 111262 NC_000014.9 scf199 99.73 True fake: scaffold gap size wrong estimation (local) 41566737 41570415 121769 118078 NC_000014.9 scf199 99.59 True fake: scaffold gap size wrong estimation (local) 41564441 41566541 124810 122710 NC_000014.9 scf199 100.0 True fake: scaffold gap size wrong estimation (local) 41561875 41564468 128218 125625 NC_000014.9 scf199 99.96 True fake: scaffold gap size wrong estimation (local) 41554920 41561973 136688 128893 NC_000014.9 scf199 99.55 True fake: scaffold gap size wrong estimation (local) 41541298 41554678 151040 137660 NC_000014.9 scf199 99.93 True fake: scaffold gap size wrong estimation (local) 41539986 41540671 153230 152545 NC_000014.9 scf199 99.85 True fake: scaffold gap size wrong estimation (local) 41537062 41539336 155870 153596 NC_000014.9 scf199 100.0 True fake: scaffold gap size wrong estimation (local) 41521774 41537134 172737 156639 NC_000014.9 scf199 99.71 True CONTIG scf199 172737 correct 93809913 93820346 10464 13 NC_000014.9 scf200 99.79 True fake: scaffold gap size wrong estimation (local) 93805691 93809983 15368 11258 NC_000014.9 scf200 95.76 True fake: scaffold gap size wrong estimation (local) 93804482 93805782 17398 16098 NC_000014.9 scf200 99.69 True fake: scaffold gap size wrong estimation (local) 93777584 93804372 45919 18365 NC_000014.9 scf200 99.95 True fake: scaffold gap size wrong estimation (local) 93773986 93777392 50298 46892 NC_000014.9 scf200 100.0 True fake: scaffold gap size wrong estimation (local) 93758596 93774083 66409 50965 NC_000014.9 scf200 99.36 True fake: scaffold gap size wrong estimation (local) 93737303 93758381 89986 67307 NC_000014.9 scf200 99.65 True fake: scaffold gap size wrong estimation (local) 93725663 93737402 102430 90692 NC_000014.9 scf200 99.83 True fake: scaffold gap size wrong estimation (local) 93722774 93725759 106081 103096 NC_000014.9 scf200 99.93 True fake: scaffold gap size wrong estimation (local) 93689695 93722203 143032 107534 NC_000014.9 scf200 99.45 True fake: scaffold gap size wrong estimation (local) 93680594 93689504 152898 143988 NC_000014.9 scf200 99.97 True fake: scaffold gap size wrong estimation (local) 93679429 93680691 154906 153644 NC_000014.9 scf200 99.84 True fake: scaffold gap size wrong estimation (local) 93678697 93679336 155711 155072 NC_000014.9 scf200 100.0 True fake: scaffold gap size wrong estimation (local) 93657473 93678786 179151 156312 NC_000014.9 scf200 99.62 True CONTIG scf200 179151 correct 61330678 61337088 6420 8 NC_000014.9 scf201 99.86 True fake: scaffold gap size wrong estimation (local) 61329380 61330768 8653 7265 NC_000014.9 scf201 99.86 True local misassembly 61328259 61329236 9631 8654 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61320670 61328050 18158 10778 NC_000014.9 scf201 99.81 True fake: scaffold gap size wrong estimation (local) 61312267 61320482 28115 19157 NC_000014.9 scf201 99.89 True fake: scaffold gap size wrong estimation (local) 61309135 61312364 31972 28741 NC_000014.9 scf201 99.85 True fake: scaffold gap size wrong estimation (local) 61307137 61309229 34748 32655 NC_000014.9 scf201 99.81 True fake: scaffold gap size wrong estimation (local) 61305284 61307232 37574 35626 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61304119 61305381 40458 39198 NC_000014.9 scf201 99.76 True fake: scaffold gap size wrong estimation (local) 61294325 61303066 51940 42443 NC_000014.9 scf201 99.93 True fake: scaffold gap size wrong estimation (local) 61292774 61294205 54270 52839 NC_000014.9 scf201 99.93 True fake: scaffold gap size wrong estimation (local) 61291486 61292475 56731 55742 NC_000014.9 scf201 100.0 True local misassembly 61290254 61291191 57669 56732 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61281828 61290347 68059 58800 NC_000014.9 scf201 98.86 True fake: scaffold gap size wrong estimation (local) 61272345 61281882 79136 68785 NC_000014.9 scf201 99.68 True fake: scaffold gap size wrong estimation (local) 61257553 61272024 94664 80211 NC_000014.9 scf201 99.85 True fake: scaffold gap size wrong estimation (local) 61253988 61257619 98980 95349 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61251897 61253977 101844 99764 NC_000014.9 scf201 97.98 True fake: scaffold gap size wrong estimation (local) 61250085 61251896 104557 102746 NC_000014.9 scf201 99.72 True fake: scaffold gap size wrong estimation (local) 61248798 61249715 107081 106164 NC_000014.9 scf201 99.78 True local misassembly 61247737 61248300 107645 107082 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61246195 61247590 109846 108450 NC_000014.9 scf201 99.57 True fake: scaffold gap size wrong estimation (local) 61243332 61246288 113731 110765 NC_000014.9 scf201 99.06 True fake: scaffold gap size wrong estimation (local) 61236715 61243397 121141 114438 NC_000014.9 scf201 99.12 True fake: scaffold gap size wrong estimation (local) 61231518 61236598 127144 122063 NC_000014.9 scf201 99.78 True fake: scaffold gap size wrong estimation (local) 61226196 61231380 133440 128125 NC_000014.9 scf201 97.6 True fake: scaffold gap size wrong estimation (local) 61217178 61226294 143372 134256 NC_000014.9 scf201 99.96 True fake: scaffold gap size wrong estimation (local) 61200667 61217277 163073 144034 NC_000014.9 scf201 98.32 True fake: scaffold gap size wrong estimation (local) 61194812 61200488 169697 164024 NC_000014.9 scf201 99.89 True fake: scaffold gap size wrong estimation (local) 61192019 61194911 173239 170347 NC_000014.9 scf201 99.97 True fake: scaffold gap size wrong estimation (local) 61188663 61192114 177375 173910 NC_000014.9 scf201 99.51 True fake: scaffold gap size wrong estimation (local) 61181471 61188543 185792 178213 NC_000014.9 scf201 98.95 True fake: scaffold gap size wrong estimation (local) 61177222 61180946 191115 187391 NC_000014.9 scf201 99.95 True fake: scaffold gap size wrong estimation (local) 61169114 61177308 200798 191868 NC_000014.9 scf201 98.25 True fake: scaffold gap size wrong estimation (local) 61164368 61168860 206351 201859 NC_000014.9 scf201 99.64 True fake: scaffold gap size wrong estimation (local) 61161232 61164367 210273 207138 NC_000014.9 scf201 99.78 True fake: scaffold gap size wrong estimation (local) 61160296 61161255 212206 211247 NC_000014.9 scf201 99.69 True fake: scaffold gap size wrong estimation (local) 61151851 61159966 221297 212336 NC_000014.9 scf201 97.09 True fake: scaffold gap size wrong estimation (local) 61150064 61151678 223860 222246 NC_000014.9 scf201 100.0 True fake: scaffold gap size wrong estimation (local) 61147177 61150161 227593 224608 NC_000014.9 scf201 99.83 True fake: scaffold gap size wrong estimation (local) 61144440 61147270 231090 228260 NC_000014.9 scf201 99.96 True fake: scaffold gap size wrong estimation (local) 61138830 61144531 237468 231767 NC_000014.9 scf201 99.95 True CONTIG scf201 237468 correct 71370349 71376710 1 7172 NC_000014.9 scf202 98.76 True fake: scaffold gap size wrong estimation (local) 71377824 71381338 8930 12443 NC_000014.9 scf202 99.94 True fake: scaffold gap size wrong estimation (local) 71381247 71393234 13085 26340 NC_000014.9 scf202 96.02 True fake: scaffold gap size wrong estimation (local) 71393142 71398033 27290 32181 NC_000014.9 scf202 99.92 True fake: scaffold gap size wrong estimation (local) 71398146 71409191 33060 44836 NC_000014.9 scf202 99.69 True fake: scaffold gap size wrong estimation (local) 71409098 71416752 45532 53186 NC_000014.9 scf202 99.96 True fake: scaffold gap size wrong estimation (local) 71416721 71417224 54115 54618 NC_000014.9 scf202 100.0 True local misassembly 71417572 71419506 54764 56698 NC_000014.9 scf202 99.95 True fake: scaffold gap size wrong estimation (local) 71419686 71421086 57848 59248 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71420988 71435418 60018 74448 NC_000014.9 scf202 99.96 True fake: scaffold gap size wrong estimation (local) 71436012 71442264 75645 84047 NC_000014.9 scf202 98.48 True fake: scaffold gap size wrong estimation (local) 71442171 71446996 84719 89535 NC_000014.9 scf202 99.81 True fake: scaffold gap size wrong estimation (local) 71446911 71457903 90352 102010 NC_000014.9 scf202 98.42 True fake: scaffold gap size wrong estimation (local) 71457807 71464576 102608 110129 NC_000014.9 scf202 98.84 True fake: scaffold gap size wrong estimation (local) 71464477 71468881 110873 115275 NC_000014.9 scf202 99.93 True fake: scaffold gap size wrong estimation (local) 71468797 71472390 115951 120308 NC_000014.9 scf202 97.61 True fake: scaffold gap size wrong estimation (local) 71472297 71480226 121072 129793 NC_000014.9 scf202 99.28 True fake: scaffold gap size wrong estimation (local) 71480152 71491614 130476 141938 NC_000014.9 scf202 99.94 True fake: scaffold gap size wrong estimation (local) 71491759 71494625 142889 145753 NC_000014.9 scf202 99.93 True fake: scaffold gap size wrong estimation (local) 71494852 71495906 146837 147891 NC_000014.9 scf202 99.81 True fake: scaffold gap size wrong estimation (local) 71495991 71509689 149583 163808 NC_000014.9 scf202 99.96 True fake: scaffold gap size wrong estimation (local) 71510317 71522788 165198 178653 NC_000014.9 scf202 99.5 True fake: scaffold gap size wrong estimation (local) 71522696 71529003 179371 186609 NC_000014.9 scf202 99.17 True fake: scaffold gap size wrong estimation (local) 71529089 71535746 187485 194141 NC_000014.9 scf202 99.95 True fake: scaffold gap size wrong estimation (local) 71535657 71538815 194832 197907 NC_000014.9 scf202 96.81 True fake: scaffold gap size wrong estimation (local) 71538717 71543823 198640 203749 NC_000014.9 scf202 99.75 True fake: scaffold gap size wrong estimation (local) 71544151 71552489 204770 213063 NC_000014.9 scf202 99.4 True fake: scaffold gap size wrong estimation (local) 71552564 71564500 213939 227374 NC_000014.9 scf202 99.51 True fake: scaffold gap size wrong estimation (local) 71564415 71567595 228049 231229 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71567808 71576972 232145 242945 NC_000014.9 scf202 99.72 True fake: scaffold gap size wrong estimation (local) 71577067 71577659 244180 244772 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71577565 71584671 245551 252695 NC_000014.9 scf202 99.41 True fake: scaffold gap size wrong estimation (local) 71584572 71597244 253390 267644 NC_000014.9 scf202 99.91 True fake: scaffold gap size wrong estimation (local) 71597147 71599326 268409 270589 NC_000014.9 scf202 99.91 True fake: scaffold gap size wrong estimation (local) 71599265 71603894 271283 275912 NC_000014.9 scf202 99.98 True fake: scaffold gap size wrong estimation (local) 71603988 71609644 276761 282417 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71609546 71611857 283094 285405 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71611773 71614298 286220 288745 NC_000014.9 scf202 99.96 True fake: scaffold gap size wrong estimation (local) 71614221 71615777 289532 291088 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71615678 71616822 291882 293050 NC_000014.9 scf202 97.78 True fake: scaffold gap size wrong estimation (local) 71616727 71633291 293899 312878 NC_000014.9 scf202 99.22 True fake: scaffold gap size wrong estimation (local) 71633248 71634205 313602 314559 NC_000014.9 scf202 99.9 True fake: scaffold gap size wrong estimation (local) 71635118 71637051 315811 317744 NC_000014.9 scf202 100.0 True indel: indel (<= 5bp) 71637053 71639963 317745 320655 NC_000014.9 scf202 100.0 True local misassembly 71640301 71640822 320656 321177 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71640726 71641484 322412 323170 NC_000014.9 scf202 100.0 True local misassembly 71641929 71644548 323225 325844 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71644458 71646194 326517 328253 NC_000014.9 scf202 100.0 True fake: scaffold gap size wrong estimation (local) 71646294 71657326 329348 341494 NC_000014.9 scf202 98.92 True fake: scaffold gap size wrong estimation (local) 71657232 71673683 342173 359318 NC_000014.9 scf202 99.53 True fake: scaffold gap size wrong estimation (local) 71673590 71674648 360096 361154 NC_000014.9 scf202 100.0 True local misassembly 71674824 71676467 361155 362798 NC_000014.9 scf202 100.0 True CONTIG scf202 364775 correct 50458811 50466396 8390 1 NC_000014.9 scf203 98.26 True fake: scaffold gap size wrong estimation (local) 50445593 50458899 22339 9037 NC_000014.9 scf203 99.92 True fake: scaffold gap size wrong estimation (local) 50432950 50445672 38061 23008 NC_000014.9 scf203 99.39 True fake: scaffold gap size wrong estimation (local) 50431780 50433047 40098 38833 NC_000014.9 scf203 99.76 True fake: scaffold gap size wrong estimation (local) 50430123 50431357 41677 40443 NC_000014.9 scf203 99.84 True fake: scaffold gap size wrong estimation (local) 50428321 50430220 44086 42189 NC_000014.9 scf203 99.89 True fake: scaffold gap size wrong estimation (local) 50424652 50428404 48667 44918 NC_000014.9 scf203 99.84 True fake: scaffold gap size wrong estimation (local) 50421900 50424724 52198 49374 NC_000014.9 scf203 99.96 True fake: scaffold gap size wrong estimation (local) 50414341 50421977 61160 52979 NC_000014.9 scf203 95.62 True fake: scaffold gap size wrong estimation (local) 50412854 50414095 62627 61386 NC_000014.9 scf203 99.84 True fake: scaffold gap size wrong estimation (local) 50404352 50412151 73191 64586 NC_000014.9 scf203 99.25 True fake: scaffold gap size wrong estimation (local) 50402203 50404202 76153 74154 NC_000014.9 scf203 100.0 True local misassembly 50401269 50401847 76732 76154 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50399361 50401122 79741 77980 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50388050 50398914 92693 81056 NC_000014.9 scf203 99.72 True fake: scaffold gap size wrong estimation (local) 50383423 50387493 98927 94005 NC_000014.9 scf203 98.88 True fake: scaffold gap size wrong estimation (local) 50381151 50382943 102069 100277 NC_000014.9 scf203 99.89 True fake: scaffold gap size wrong estimation (local) 50376138 50381249 107904 102793 NC_000014.9 scf203 99.96 True fake: scaffold gap size wrong estimation (local) 50364385 50375678 121937 109154 NC_000014.9 scf203 99.22 True fake: scaffold gap size wrong estimation (local) 50362698 50364484 124429 122643 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50356479 50362420 133657 126921 NC_000014.9 scf203 99.75 True fake: scaffold gap size wrong estimation (local) 50341736 50356572 150044 134442 NC_000014.9 scf203 99.91 True fake: scaffold gap size wrong estimation (local) 50337918 50341463 154547 151095 NC_000014.9 scf203 97.38 True fake: scaffold gap size wrong estimation (local) 50331106 50338014 163300 155336 NC_000014.9 scf203 98.57 True fake: scaffold gap size wrong estimation (local) 50327598 50331004 167486 164080 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50326961 50327484 168291 167768 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50308229 50327054 191201 168820 NC_000014.9 scf203 98.93 True fake: scaffold gap size wrong estimation (local) 50306517 50308319 193947 192145 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50304771 50306145 196564 195190 NC_000014.9 scf203 100.0 True local misassembly 50303812 50304502 197255 196565 NC_000014.9 scf203 99.86 True fake: scaffold gap size wrong estimation (local) 50298497 50303310 204332 198703 NC_000014.9 scf203 98.59 True fake: scaffold gap size wrong estimation (local) 50268147 50298592 241130 205088 NC_000014.9 scf203 99.04 True fake: scaffold gap size wrong estimation (local) 50264239 50268245 245841 241835 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50259504 50263991 251340 246852 NC_000014.9 scf203 99.91 True fake: scaffold gap size wrong estimation (local) 50258075 50259361 253563 252277 NC_000014.9 scf203 99.84 True indel: indel (<= 5bp) 50257291 50258073 254346 253564 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50256350 50257290 255878 254938 NC_000014.9 scf203 99.79 True local misassembly 50255363 50256133 256649 255879 NC_000014.9 scf203 99.87 True fake: scaffold gap size wrong estimation (local) 50250108 50255447 263119 257780 NC_000014.9 scf203 99.91 True fake: scaffold gap size wrong estimation (local) 50246447 50249648 267606 264405 NC_000014.9 scf203 99.84 True fake: scaffold gap size wrong estimation (local) 50244256 50245949 270599 268906 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50241635 50243790 274069 271914 NC_000014.9 scf203 99.95 True fake: scaffold gap size wrong estimation (local) 50239747 50240849 276861 275759 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50234695 50238331 282748 279092 NC_000014.9 scf203 99.32 True fake: scaffold gap size wrong estimation (local) 50231708 50234076 286526 284158 NC_000014.9 scf203 99.92 True fake: scaffold gap size wrong estimation (local) 50227512 50231396 291555 287671 NC_000014.9 scf203 99.97 True fake: scaffold gap size wrong estimation (local) 50220406 50227304 300193 292574 NC_000014.9 scf203 95.46 True fake: scaffold gap size wrong estimation (local) 50218237 50220215 303186 301191 NC_000014.9 scf203 99.05 True fake: scaffold gap size wrong estimation (local) 50216589 50217727 305727 304589 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50213892 50214698 309072 308266 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50208544 50213990 316665 310455 NC_000014.9 scf203 95.16 True fake: scaffold gap size wrong estimation (local) 50207825 50208636 318829 318018 NC_000014.9 scf203 99.51 True local misassembly 50205982 50206776 320045 319251 NC_000014.9 scf203 99.87 True indel: indel (<= 5bp) 50203594 50205980 322432 320046 NC_000014.9 scf203 99.92 True indel: indel (<= 5bp) 50203032 50203591 322992 322433 NC_000014.9 scf203 99.64 True fake: scaffold gap size wrong estimation (local) 50202154 50203031 323979 323102 NC_000014.9 scf203 99.89 True fake: scaffold gap size wrong estimation (local) 50201538 50202153 325262 324647 NC_000014.9 scf203 99.84 True indel: indel (<= 5bp) 50198354 50201532 328441 325263 NC_000014.9 scf203 99.94 True indel: indel (<= 5bp) 50197691 50198352 329103 328442 NC_000014.9 scf203 99.85 True fake: scaffold gap size wrong estimation (local) 50195922 50197724 331700 329898 NC_000014.9 scf203 100.0 True local misassembly 50194674 50195749 332776 331701 NC_000014.9 scf203 99.91 True fake: scaffold gap size wrong estimation (local) 50187442 50194772 343045 333747 NC_000014.9 scf203 95.99 True fake: scaffold gap size wrong estimation (local) 50178791 50187363 354123 343975 NC_000014.9 scf203 98.8 True fake: scaffold gap size wrong estimation (local) 50174341 50178667 359519 355172 NC_000014.9 scf203 99.49 True fake: scaffold gap size wrong estimation (local) 50173620 50174336 361287 360571 NC_000014.9 scf203 99.72 True local misassembly 50172416 50173333 362205 361288 NC_000014.9 scf203 100.0 True local misassembly 50171685 50172305 362826 362206 NC_000014.9 scf203 100.0 True indel: indel (<= 5bp) 50171002 50171682 363507 362827 NC_000014.9 scf203 99.85 True fake: scaffold gap size wrong estimation (local) 50169538 50170062 366069 365545 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50167492 50169537 368683 366638 NC_000014.9 scf203 99.95 True fake: scaffold gap size wrong estimation (local) 50164502 50166528 372392 370366 NC_000014.9 scf203 99.85 True fake: scaffold gap size wrong estimation (local) 50160577 50164248 377127 372480 NC_000014.9 scf203 96.68 True fake: scaffold gap size wrong estimation (local) 50156802 50160397 381721 378129 NC_000014.9 scf203 99.78 True fake: scaffold gap size wrong estimation (local) 50153812 50156895 385456 382373 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50152290 50153904 387907 386293 NC_000014.9 scf203 99.94 True local misassembly 50151089 50152126 388945 387908 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50148349 50151048 392525 389827 NC_000014.9 scf203 99.89 True fake: scaffold gap size wrong estimation (local) 50147519 50148423 394314 393410 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50143330 50146046 399279 396529 NC_000014.9 scf203 98.76 True fake: scaffold gap size wrong estimation (local) 50142077 50143329 401368 400116 NC_000014.9 scf203 99.84 True local misassembly 50141204 50141857 402022 401369 NC_000014.9 scf203 99.85 True fake: scaffold gap size wrong estimation (local) 50136594 50141091 407596 403099 NC_000014.9 scf203 99.89 True fake: scaffold gap size wrong estimation (local) 50121532 50136654 428248 408327 NC_000014.9 scf203 95.49 True fake: scaffold gap size wrong estimation (local) 50120802 50121531 430531 429802 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50113915 50119712 439183 432544 NC_000014.9 scf203 99.26 True fake: scaffold gap size wrong estimation (local) 50108143 50113801 445988 440296 NC_000014.9 scf203 99.3 True fake: scaffold gap size wrong estimation (local) 50100459 50108213 455337 446705 NC_000014.9 scf203 98.51 True fake: scaffold gap size wrong estimation (local) 50098208 50100110 457467 455565 NC_000014.9 scf203 100.0 True fake: scaffold gap size wrong estimation (local) 50095302 50098015 461229 458516 NC_000014.9 scf203 99.96 True fake: scaffold gap size wrong estimation (local) 50083327 50094921 474677 462362 NC_000014.9 scf203 99.37 True fake: scaffold gap size wrong estimation (local) 50079831 50083422 478978 475368 NC_000014.9 scf203 99.47 True CONTIG scf203 478978 correct 75914823 75921475 6663 13 NC_000014.9 scf204 99.77 True fake: scaffold gap size wrong estimation (local) 75908821 75914617 13394 7690 NC_000014.9 scf204 98.26 True fake: scaffold gap size wrong estimation (local) 75893762 75908918 29228 14067 NC_000014.9 scf204 99.77 True fake: scaffold gap size wrong estimation (local) 75885208 75893633 38595 30170 NC_000014.9 scf204 99.81 True fake: scaffold gap size wrong estimation (local) 75875089 75885306 49501 39284 NC_000014.9 scf204 99.88 True fake: scaffold gap size wrong estimation (local) 75874336 75874933 51197 50600 NC_000014.9 scf204 99.83 True fake: scaffold gap size wrong estimation (local) 75870946 75873085 55379 53240 NC_000014.9 scf204 99.77 True local misassembly 75869878 75870473 55975 55380 NC_000014.9 scf204 99.83 True fake: scaffold gap size wrong estimation (local) 75863912 75869963 63943 57142 NC_000014.9 scf204 96.84 True fake: scaffold gap size wrong estimation (local) 75857385 75863985 71222 64615 NC_000014.9 scf204 99.86 True fake: scaffold gap size wrong estimation (local) 75847106 75857418 83331 71971 NC_000014.9 scf204 99.15 True relocation, inconsistency = 36791594 39049782 39055511 89017 83332 NC_000014.9 scf204 98.93 True fake: scaffold gap size wrong estimation (local) 39041884 39049907 97665 89645 NC_000014.9 scf204 99.78 True fake: scaffold gap size wrong estimation (local) 39034272 39041412 106855 98873 NC_000014.9 scf204 99.18 True fake: scaffold gap size wrong estimation (local) 39031508 39034371 110557 107685 NC_000014.9 scf204 99.69 True fake: scaffold gap size wrong estimation (local) 39024744 39031580 118125 111289 NC_000014.9 scf204 99.94 True fake: scaffold gap size wrong estimation (local) 39023229 39024839 120410 118801 NC_000014.9 scf204 99.69 True CONTIG scf204 120410 misassembled 65173126 65176253 3191 1 NC_000014.9 scf205 97.93 True fake: scaffold gap size wrong estimation (local) 65171904 65172881 5119 4142 NC_000014.9 scf205 99.8 True fake: scaffold gap size wrong estimation (local) 65170340 65171755 6740 5325 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65165559 65169889 12533 7771 NC_000014.9 scf205 97.43 True fake: scaffold gap size wrong estimation (local) 65163658 65165190 15280 13750 NC_000014.9 scf205 99.87 True fake: scaffold gap size wrong estimation (local) 65158296 65163543 22416 16343 NC_000014.9 scf205 99.32 True fake: scaffold gap size wrong estimation (local) 65155475 65157290 26006 24191 NC_000014.9 scf205 99.94 True fake: scaffold gap size wrong estimation (local) 65154547 65155568 27962 26941 NC_000014.9 scf205 99.9 True indel: indel (<= 5bp) 65153900 65154545 28608 27963 NC_000014.9 scf205 99.69 True local misassembly 65152660 65153442 29391 28609 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65149434 65152475 33682 30641 NC_000014.9 scf205 99.8 True fake: scaffold gap size wrong estimation (local) 65147309 65149532 36728 34505 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65145118 65146851 39683 37950 NC_000014.9 scf205 100.0 True indel: indel (<= 5bp) 65138706 65145117 46096 39685 NC_000014.9 scf205 99.94 True indel: indel (> 5bp) 65134664 65138705 50163 46122 NC_000014.9 scf205 99.83 True local misassembly 65132270 65134663 53323 50930 NC_000014.9 scf205 99.92 True fake: scaffold gap size wrong estimation (local) 65130046 65130756 56285 55575 NC_000014.9 scf205 100.0 True local misassembly 65130754 65131308 56840 56286 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65128968 65129912 59861 58917 NC_000014.9 scf205 99.79 True local misassembly 65126331 65127122 60653 59862 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65125087 65126427 63919 62579 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65120031 65124198 71019 66004 NC_000014.9 scf205 97.29 True fake: scaffold gap size wrong estimation (local) 65117698 65119265 74264 72699 NC_000014.9 scf205 99.81 True fake: scaffold gap size wrong estimation (local) 65116655 65117775 76572 75452 NC_000014.9 scf205 99.82 True local misassembly 65115327 65116207 77453 76573 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 65110140 65115421 84041 78743 NC_000014.9 scf205 99.55 True fake: scaffold gap size wrong estimation (local) 65108665 65110228 86290 84726 NC_000014.9 scf205 99.74 True fake: scaffold gap size wrong estimation (local) 65107167 65108536 89197 87828 NC_000014.9 scf205 99.78 True local misassembly 65105928 65106651 89977 89254 NC_000014.9 scf205 99.86 True fake: scaffold gap size wrong estimation (local) 65103968 65105927 93380 91421 NC_000014.9 scf205 96.73 True fake: scaffold gap size wrong estimation (local) 65102713 65103967 95760 94506 NC_000014.9 scf205 97.05 True fake: scaffold gap size wrong estimation (local) 65100251 65102712 99138 96677 NC_000014.9 scf205 99.88 True fake: scaffold gap size wrong estimation (local) 65089757 65100331 110425 99851 NC_000014.9 scf205 99.93 True relocation, inconsistency = 5330285 70430619 70436420 110428 117058 NC_000014.9 scf205 99.23 True fake: scaffold gap size wrong estimation (local) 70436324 70444041 117765 125482 NC_000014.9 scf205 99.88 True fake: scaffold gap size wrong estimation (local) 70443949 70452449 126178 135385 NC_000014.9 scf205 99.88 True fake: scaffold gap size wrong estimation (local) 70452575 70453661 136349 137449 NC_000014.9 scf205 98.27 True fake: scaffold gap size wrong estimation (local) 70453918 70455026 137597 138705 NC_000014.9 scf205 100.0 True fake: scaffold gap size wrong estimation (local) 70455472 70457011 139915 142822 NC_000014.9 scf205 97.96 True CONTIG scf205 142822 misassembled 40954806 40973618 1 18814 NC_000014.9 scf206 99.91 True fake: scaffold gap size wrong estimation (local) 40973525 40979985 19579 25874 NC_000014.9 scf206 97.25 True fake: scaffold gap size wrong estimation (local) 40979897 40991377 26570 38231 NC_000014.9 scf206 98.89 True fake: scaffold gap size wrong estimation (local) 40991562 41007286 39047 55589 NC_000014.9 scf206 99.47 True fake: scaffold gap size wrong estimation (local) 41007113 41015432 56804 65146 NC_000014.9 scf206 99.5 True fake: scaffold gap size wrong estimation (local) 41015568 41024471 66007 74910 NC_000014.9 scf206 99.76 True fake: scaffold gap size wrong estimation (local) 41024406 41034703 75650 86047 NC_000014.9 scf206 99.05 True fake: scaffold gap size wrong estimation (local) 41034634 41038822 86826 90862 NC_000014.9 scf206 95.75 True fake: scaffold gap size wrong estimation (local) 41038738 41049501 91515 102292 NC_000014.9 scf206 99.15 True fake: scaffold gap size wrong estimation (local) 41049618 41062383 103208 116716 NC_000014.9 scf206 99.26 True fake: scaffold gap size wrong estimation (local) 41062480 41063968 117627 119115 NC_000014.9 scf206 99.73 True local misassembly 41064423 41065198 119392 120167 NC_000014.9 scf206 99.74 True fake: scaffold gap size wrong estimation (local) 41065099 41080256 120990 136700 NC_000014.9 scf206 99.46 True fake: scaffold gap size wrong estimation (local) 41080180 41089440 137645 146923 NC_000014.9 scf206 99.49 True fake: scaffold gap size wrong estimation (local) 41089343 41100170 147596 158436 NC_000014.9 scf206 99.78 True fake: scaffold gap size wrong estimation (local) 41100095 41116161 159143 176013 NC_000014.9 scf206 99.25 True fake: scaffold gap size wrong estimation (local) 41116187 41126485 176793 187871 NC_000014.9 scf206 98.94 True fake: scaffold gap size wrong estimation (local) 41126405 41128676 188529 190800 NC_000014.9 scf206 99.56 True fake: scaffold gap size wrong estimation (local) 41128578 41133993 191505 196887 NC_000014.9 scf206 97.4 True fake: scaffold gap size wrong estimation (local) 41134346 41139987 197639 204427 NC_000014.9 scf206 99.41 True fake: scaffold gap size wrong estimation (local) 41140265 41154017 205496 220045 NC_000014.9 scf206 99.45 True fake: scaffold gap size wrong estimation (local) 41154404 41159482 221241 226319 NC_000014.9 scf206 99.88 True fake: scaffold gap size wrong estimation (local) 41160161 41167844 227685 235365 NC_000014.9 scf206 99.95 True fake: scaffold gap size wrong estimation (local) 41167753 41180634 236080 248988 NC_000014.9 scf206 99.71 True fake: scaffold gap size wrong estimation (local) 41180542 41190796 249616 260631 NC_000014.9 scf206 99.81 True fake: scaffold gap size wrong estimation (local) 41190699 41194449 261304 265056 NC_000014.9 scf206 99.92 True CONTIG scf206 265056 correct 35943366 35948163 5665 50 NC_000014.9 scf207 99.83 True fake: scaffold gap size wrong estimation (local) 35936831 35943463 13791 6394 NC_000014.9 scf207 99.12 True fake: scaffold gap size wrong estimation (local) 35930296 35936580 21112 14828 NC_000014.9 scf207 99.95 True fake: scaffold gap size wrong estimation (local) 35923010 35930384 29962 21745 NC_000014.9 scf207 98.0 True fake: scaffold gap size wrong estimation (local) 35920154 35922536 33415 31033 NC_000014.9 scf207 100.0 True relocation, inconsistency = -54808211 90719028 90728364 42752 33416 NC_000014.9 scf207 99.96 True fake: scaffold gap size wrong estimation (local) 90710129 90718825 54421 44069 NC_000014.9 scf207 99.46 True fake: scaffold gap size wrong estimation (local) 90708146 90708895 57425 56676 NC_000014.9 scf207 99.87 True local misassembly 90706214 90707617 58837 57434 NC_000014.9 scf207 100.0 True fake: scaffold gap size wrong estimation (local) 90704414 90706188 61627 59853 NC_000014.9 scf207 99.94 True fake: scaffold gap size wrong estimation (local) 90699234 90704513 67819 62542 NC_000014.9 scf207 99.79 True fake: scaffold gap size wrong estimation (local) 90688621 90699333 78746 68463 NC_000014.9 scf207 95.87 True relocation, inconsistency = 630962 90050204 90057658 78747 86958 NC_000014.9 scf207 99.26 True fake: scaffold gap size wrong estimation (local) 90057816 90064442 87793 95219 NC_000014.9 scf207 99.36 True fake: scaffold gap size wrong estimation (local) 90064346 90066150 95952 97756 NC_000014.9 scf207 99.89 True local misassembly 90066363 90067115 97757 98509 NC_000014.9 scf207 100.0 True fake: scaffold gap size wrong estimation (local) 90067019 90069054 99391 101426 NC_000014.9 scf207 99.9 True fake: scaffold gap size wrong estimation (local) 90069260 90071928 102483 105151 NC_000014.9 scf207 99.93 True fake: scaffold gap size wrong estimation (local) 90071861 90073808 105937 107884 NC_000014.9 scf207 99.59 True fake: scaffold gap size wrong estimation (local) 90074097 90077018 108922 111843 NC_000014.9 scf207 99.83 True fake: scaffold gap size wrong estimation (local) 90077319 90085463 112901 121793 NC_000014.9 scf207 99.01 True fake: scaffold gap size wrong estimation (local) 90085855 90090312 122923 128245 NC_000014.9 scf207 99.84 True fake: scaffold gap size wrong estimation (local) 90090216 90098666 128966 139112 NC_000014.9 scf207 98.99 True fake: scaffold gap size wrong estimation (local) 90098881 90101735 140084 142938 NC_000014.9 scf207 100.0 True fake: scaffold gap size wrong estimation (local) 90101989 90109002 143920 151758 NC_000014.9 scf207 99.72 True fake: scaffold gap size wrong estimation (local) 90110818 90113881 154210 157272 NC_000014.9 scf207 99.84 True fake: scaffold gap size wrong estimation (local) 90113788 90119662 157971 164686 NC_000014.9 scf207 98.95 True fake: scaffold gap size wrong estimation (local) 90120599 90122031 166378 167824 NC_000014.9 scf207 98.69 True local misassembly 90119632 90120375 167840 168583 NC_000014.9 scf207 99.73 True fake: scaffold gap size wrong estimation (local) 90122333 90125365 171338 174370 NC_000014.9 scf207 99.97 True fake: scaffold gap size wrong estimation (local) 90126991 90127661 176702 177372 NC_000014.9 scf207 99.7 True fake: scaffold gap size wrong estimation (local) 90127818 90130215 178492 180889 NC_000014.9 scf207 99.92 True fake: scaffold gap size wrong estimation (local) 90130502 90141562 181994 193902 NC_000014.9 scf207 99.19 True fake: scaffold gap size wrong estimation (local) 90142403 90143178 195582 196357 NC_000014.9 scf207 99.87 True local misassembly 90143351 90144495 196373 197517 NC_000014.9 scf207 99.83 True fake: scaffold gap size wrong estimation (local) 90144597 90155990 198452 210571 NC_000014.9 scf207 99.85 True fake: scaffold gap size wrong estimation (local) 90155892 90157613 211264 212984 NC_000014.9 scf207 99.88 True fake: scaffold gap size wrong estimation (local) 90157811 90169994 214034 226213 NC_000014.9 scf207 99.87 True fake: scaffold gap size wrong estimation (local) 90170172 90175419 227160 232407 NC_000014.9 scf207 99.96 True fake: scaffold gap size wrong estimation (local) 90175335 90176825 233130 234620 NC_000014.9 scf207 100.0 True fake: scaffold gap size wrong estimation (local) 90176770 90178256 235716 237263 NC_000014.9 scf207 96.06 True fake: scaffold gap size wrong estimation (local) 90178518 90191337 238402 251220 NC_000014.9 scf207 99.91 True fake: scaffold gap size wrong estimation (local) 90191238 90199446 251918 260130 NC_000014.9 scf207 99.85 True fake: scaffold gap size wrong estimation (local) 90199638 90202000 261023 263385 NC_000014.9 scf207 99.87 True fake: scaffold gap size wrong estimation (local) 90202176 90206871 264432 269127 NC_000014.9 scf207 99.96 True CONTIG scf207 269127 misassembled 38757955 38765685 9317 1579 NC_000014.9 scf208 99.82 True fake: scaffold gap size wrong estimation (local) 38748572 38757301 19368 10621 NC_000014.9 scf208 99.68 True fake: scaffold gap size wrong estimation (local) 38736110 38748230 32596 20476 NC_000014.9 scf208 99.96 True fake: scaffold gap size wrong estimation (local) 38722071 38736206 47410 33306 NC_000014.9 scf208 99.73 True fake: scaffold gap size wrong estimation (local) 38716363 38722149 53884 48099 NC_000014.9 scf208 99.95 True CONTIG scf208 53884 correct 93297329 93304440 1 7724 NC_000014.9 scf209 97.16 True fake: scaffold gap size wrong estimation (local) 93304345 93313947 8390 18699 NC_000014.9 scf209 99.89 True fake: scaffold gap size wrong estimation (local) 93313854 93317237 19306 23072 NC_000014.9 scf209 99.24 True fake: scaffold gap size wrong estimation (local) 93317140 93325174 23922 32823 NC_000014.9 scf209 98.84 True fake: scaffold gap size wrong estimation (local) 93325119 93328688 33448 37016 NC_000014.9 scf209 99.97 True fake: scaffold gap size wrong estimation (local) 93328616 93339258 37749 49168 NC_000014.9 scf209 99.26 True fake: scaffold gap size wrong estimation (local) 93339467 93340385 50203 51121 NC_000014.9 scf209 100.0 True local misassembly 93340573 93341213 51219 51859 NC_000014.9 scf209 100.0 True fake: scaffold gap size wrong estimation (local) 93341606 93342244 52650 53288 NC_000014.9 scf209 100.0 True fake: scaffold gap size wrong estimation (local) 93342149 93356242 54332 68424 NC_000014.9 scf209 99.97 True fake: scaffold gap size wrong estimation (local) 93356156 93357702 69144 70690 NC_000014.9 scf209 99.74 True fake: scaffold gap size wrong estimation (local) 93359232 93361056 72828 74652 NC_000014.9 scf209 99.95 True local misassembly 93361852 93362453 74653 75254 NC_000014.9 scf209 99.83 True fake: scaffold gap size wrong estimation (local) 93362374 93363887 76651 78164 NC_000014.9 scf209 99.93 True fake: scaffold gap size wrong estimation (local) 93364580 93365165 80212 80797 NC_000014.9 scf209 99.83 True local misassembly 93365606 93366780 80798 81972 NC_000014.9 scf209 99.91 True fake: scaffold gap size wrong estimation (local) 93366781 93367643 83316 84178 NC_000014.9 scf209 100.0 True indel: indel (<= 5bp) 93367649 93370628 84179 87158 NC_000014.9 scf209 99.97 True fake: scaffold gap size wrong estimation (local) 93370535 93385662 87912 103670 NC_000014.9 scf209 98.94 True fake: scaffold gap size wrong estimation (local) 93385573 93405264 104324 125918 NC_000014.9 scf209 99.14 True fake: scaffold gap size wrong estimation (local) 93405209 93408591 126865 130247 NC_000014.9 scf209 99.82 True fake: scaffold gap size wrong estimation (local) 93408499 93413131 130924 135557 NC_000014.9 scf209 99.78 True CONTIG scf209 135557 correct 40332122 40346192 1 14069 NC_000014.9 scf210 99.94 True fake: scaffold gap size wrong estimation (local) 40346107 40348144 14753 16790 NC_000014.9 scf210 99.9 True CONTIG scf210 16790 correct 28194200 28196616 1 2417 NC_000014.9 scf211 99.83 True fake: scaffold gap size wrong estimation (local) 28197278 28199454 3836 6012 NC_000014.9 scf211 100.0 True fake: scaffold gap size wrong estimation (local) 28199360 28203383 6656 10683 NC_000014.9 scf211 99.73 True fake: scaffold gap size wrong estimation (local) 28203308 28226293 11374 35846 NC_000014.9 scf211 99.78 True fake: scaffold gap size wrong estimation (local) 28226201 28235455 36555 45808 NC_000014.9 scf211 99.82 True fake: scaffold gap size wrong estimation (local) 28235387 28243536 46510 54661 NC_000014.9 scf211 99.88 True fake: scaffold gap size wrong estimation (local) 28243437 28245862 55325 57750 NC_000014.9 scf211 99.88 True fake: scaffold gap size wrong estimation (local) 28245777 28254034 58440 67485 NC_000014.9 scf211 99.13 True fake: scaffold gap size wrong estimation (local) 28254182 28255179 68686 69683 NC_000014.9 scf211 99.8 True fake: scaffold gap size wrong estimation (local) 28255109 28264746 70659 80297 NC_000014.9 scf211 99.88 True fake: scaffold gap size wrong estimation (local) 28264650 28272273 80961 88486 NC_000014.9 scf211 98.62 True fake: scaffold gap size wrong estimation (local) 28272189 28277912 89296 94858 NC_000014.9 scf211 97.15 True fake: scaffold gap size wrong estimation (local) 28278111 28300278 95769 118634 NC_000014.9 scf211 99.77 True fake: scaffold gap size wrong estimation (local) 28300179 28306777 119296 125902 NC_000014.9 scf211 99.77 True fake: scaffold gap size wrong estimation (local) 28306688 28312575 126606 132493 NC_000014.9 scf211 99.9 True CONTIG scf211 132507 correct 37356698 37359062 1 2400 NC_000014.9 scf212 98.21 True fake: scaffold gap size wrong estimation (local) 37360862 37361526 4991 5655 NC_000014.9 scf212 99.55 True fake: scaffold gap size wrong estimation (local) 37361769 37362444 6219 6894 NC_000014.9 scf212 99.85 True fake: scaffold gap size wrong estimation (local) 37362657 37374359 8007 19716 NC_000014.9 scf212 99.74 True fake: scaffold gap size wrong estimation (local) 37374556 37388518 20610 34573 NC_000014.9 scf212 99.84 True fake: scaffold gap size wrong estimation (local) 37388425 37390208 35288 37071 NC_000014.9 scf212 99.66 True fake: scaffold gap size wrong estimation (local) 37390116 37395034 37800 42907 NC_000014.9 scf212 99.76 True fake: scaffold gap size wrong estimation (local) 37394938 37405960 43846 54869 NC_000014.9 scf212 99.91 True fake: scaffold gap size wrong estimation (local) 37405866 37415460 55575 65964 NC_000014.9 scf212 97.21 True fake: scaffold gap size wrong estimation (local) 37415629 37431591 67022 83758 NC_000014.9 scf212 99.67 True fake: scaffold gap size wrong estimation (local) 37431718 37443468 84634 96383 NC_000014.9 scf212 99.89 True fake: scaffold gap size wrong estimation (local) 37443414 37444793 97099 98473 NC_000014.9 scf212 99.49 True CONTIG scf212 98473 correct 24531987 24545815 1 13824 NC_000014.9 scf213 99.91 True fake: scaffold gap size wrong estimation (local) 24545722 24548323 14522 17123 NC_000014.9 scf213 100.0 True fake: scaffold gap size wrong estimation (local) 24548227 24551827 17775 21376 NC_000014.9 scf213 99.97 True fake: scaffold gap size wrong estimation (local) 24552301 24554722 22610 25031 NC_000014.9 scf213 99.96 True fake: scaffold gap size wrong estimation (local) 24554817 24559000 25208 30360 NC_000014.9 scf213 100.0 True fake: scaffold gap size wrong estimation (local) 24559132 24560964 31314 33146 NC_000014.9 scf213 100.0 True fake: scaffold gap size wrong estimation (local) 24560890 24568932 33907 42737 NC_000014.9 scf213 100.0 True fake: scaffold gap size wrong estimation (local) 24569072 24571039 43666 45632 NC_000014.9 scf213 99.95 True fake: scaffold gap size wrong estimation (local) 24570945 24578726 46368 54149 NC_000014.9 scf213 99.97 True fake: scaffold gap size wrong estimation (local) 24578633 24583959 54765 60090 NC_000014.9 scf213 99.94 True CONTIG scf213 60196 correct 34901930 34903924 2796 4790 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34904100 34905765 5918 7582 NC_000014.9 scf214 99.94 True fake: scaffold gap size wrong estimation (local) 34905755 34908084 8457 10785 NC_000014.9 scf214 99.96 True fake: scaffold gap size wrong estimation (local) 34908197 34909693 11827 13323 NC_000014.9 scf214 99.87 True fake: scaffold gap size wrong estimation (local) 34909951 34920053 14389 25271 NC_000014.9 scf214 98.78 True fake: scaffold gap size wrong estimation (local) 34920221 34921209 26219 27207 NC_000014.9 scf214 99.8 True indel: indel (> 5bp) 34921302 34921978 27346 28022 NC_000014.9 scf214 100.0 True local misassembly 34922130 34922839 28023 28732 NC_000014.9 scf214 98.03 True fake: scaffold gap size wrong estimation (local) 34922840 34923985 29602 30747 NC_000014.9 scf214 99.91 True fake: scaffold gap size wrong estimation (local) 34923925 34924627 31989 32691 NC_000014.9 scf214 99.86 True fake: scaffold gap size wrong estimation (local) 34924547 34925360 33768 34581 NC_000014.9 scf214 100.0 True indel: indel (> 5bp) 34925361 34927758 34590 36987 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34929000 34930991 38951 40942 NC_000014.9 scf214 100.0 True local misassembly 34931364 34931902 41033 41571 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34932498 34934154 43203 44859 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34934609 34935901 46421 47710 NC_000014.9 scf214 99.77 True fake: scaffold gap size wrong estimation (local) 34936200 34937100 49563 50463 NC_000014.9 scf214 100.0 True local misassembly 34938220 34938852 50821 51453 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34938757 34944084 52965 59257 NC_000014.9 scf214 97.46 True fake: scaffold gap size wrong estimation (local) 34944002 34947644 59845 63522 NC_000014.9 scf214 99.05 True fake: scaffold gap size wrong estimation (local) 34950728 34953223 68177 70672 NC_000014.9 scf214 99.92 True fake: scaffold gap size wrong estimation (local) 34953465 34955986 71768 74235 NC_000014.9 scf214 97.86 True fake: scaffold gap size wrong estimation (local) 34955905 34957007 75200 76302 NC_000014.9 scf214 100.0 True local misassembly 34957747 34958791 76723 77767 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34959152 34961745 79075 81678 NC_000014.9 scf214 99.31 True fake: scaffold gap size wrong estimation (local) 34961647 34971146 82514 93487 NC_000014.9 scf214 97.78 True fake: scaffold gap size wrong estimation (local) 34971049 34973261 94176 96388 NC_000014.9 scf214 99.95 True fake: scaffold gap size wrong estimation (local) 34973491 34974935 97581 99025 NC_000014.9 scf214 99.93 True fake: scaffold gap size wrong estimation (local) 34974875 34976533 99798 101482 NC_000014.9 scf214 98.28 True fake: scaffold gap size wrong estimation (local) 34977036 34977867 101604 102435 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 34977813 34991128 103449 120992 NC_000014.9 scf214 96.41 True local misassembly 34991335 34992087 121019 121771 NC_000014.9 scf214 99.73 True fake: scaffold gap size wrong estimation (local) 34992024 34994277 122789 125042 NC_000014.9 scf214 99.91 True relocation, scaffold gap is present, inconsistency = 53681037 88676426 88684236 133964 126154 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35001187 35002623 134691 136127 NC_000014.9 scf214 99.93 True fake: not a misassembly (possible transposable element) 88672603 88673997 138483 137089 NC_000014.9 scf214 99.93 True fake: not a misassembly (possible transposable element) 35004354 35005961 138484 140091 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88670292 88671837 141667 140122 NC_000014.9 scf214 100.0 True relocation, inconsistency = 53662693 35006459 35007598 141668 142807 NC_000014.9 scf214 99.91 True local misassembly 35007940 35008884 142808 143752 NC_000014.9 scf214 99.89 True fake: not a misassembly (possible transposable element) 88666297 88668411 147468 145354 NC_000014.9 scf214 99.86 True fake: not a misassembly (possible transposable element) 35010748 35012222 147469 148943 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88664276 88665702 150370 148944 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35013130 35014522 150574 151965 NC_000014.9 scf214 99.93 True relocation, inconsistency = 53648020 88662543 88663647 153070 151966 NC_000014.9 scf214 100.0 True local misassembly 88660750 88662009 154513 153254 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35016149 35016844 154514 155209 NC_000014.9 scf214 99.86 True fake: not a misassembly (possible transposable element) 88656344 88660809 159695 155230 NC_000014.9 scf214 99.98 True fake: not a misassembly (possible transposable element) 35020063 35021504 160411 161852 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88653406 88654764 163380 162022 NC_000014.9 scf214 99.85 True fake: not a misassembly (possible transposable element) 35022434 35026798 163546 167908 NC_000014.9 scf214 99.91 True fake: not a misassembly (possible transposable element) 88645062 88650246 173294 168109 NC_000014.9 scf214 99.94 True fake: scaffold gap size wrong estimation (local) 88639647 88644851 179450 174246 NC_000014.9 scf214 99.94 True fake: not a misassembly (possible transposable element) 35035655 35037439 179779 181601 NC_000014.9 scf214 97.92 True fake: not a misassembly (possible transposable element) 88636482 88638215 183335 181602 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 88633639 88636545 186948 184042 NC_000014.9 scf214 99.9 True fake: not a misassembly (possible transposable element) 35041004 35044229 187043 190268 NC_000014.9 scf214 99.97 True fake: not a misassembly (possible transposable element) 88630045 88631135 192877 191787 NC_000014.9 scf214 99.82 True fake: not a misassembly (possible transposable element) 35046154 35047608 192878 194330 NC_000014.9 scf214 99.79 True fake: not a misassembly (possible transposable element) 88625624 88629484 198191 194331 NC_000014.9 scf214 99.92 True fake: not a misassembly (possible transposable element) 35049709 35051297 198302 199890 NC_000014.9 scf214 99.94 True fake: not a misassembly (possible transposable element) 88617209 88624807 207341 199891 NC_000014.9 scf214 97.91 True fake: not a misassembly (possible transposable element) 35056309 35057435 207342 208468 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88607993 88616810 217590 208469 NC_000014.9 scf214 96.61 True local misassembly 88592979 88606579 233126 219527 NC_000014.9 scf214 99.95 True fake: scaffold gap size wrong estimation (local) 88592495 88593006 234313 233801 NC_000014.9 scf214 99.81 True local misassembly 88589194 88591788 237625 235031 NC_000014.9 scf214 99.92 True fake: not a misassembly (possible transposable element) 35079269 35084486 237626 242845 NC_000014.9 scf214 99.89 True fake: not a misassembly (possible transposable element) 88573305 88585424 255016 242864 NC_000014.9 scf214 99.6 True relocation, scaffold gap is present, inconsistency = 53479332 35093086 35093915 255074 255903 NC_000014.9 scf214 99.52 True local misassembly 35094922 35097097 257166 259678 NC_000014.9 scf214 98.19 True fake: not a misassembly (possible transposable element) 88566053 88571029 264662 259679 NC_000014.9 scf214 99.74 True fake: not a misassembly (possible transposable element) 35101222 35102223 265403 266403 NC_000014.9 scf214 99.9 True local misassembly 35100487 35101319 266423 267255 NC_000014.9 scf214 99.76 True relocation, inconsistency = 53458345 88559665 88564253 271844 267256 NC_000014.9 scf214 99.93 True fake: scaffold gap size wrong estimation (local) 88558814 88559664 273458 272608 NC_000014.9 scf214 99.76 True indel: indel (<= 5bp) 88558231 88558811 274039 273459 NC_000014.9 scf214 99.83 True fake: not a misassembly (possible transposable element) 35106677 35109213 274045 276589 NC_000014.9 scf214 99.61 True fake: not a misassembly (possible transposable element) 88549989 88556490 283129 276628 NC_000014.9 scf214 99.92 True fake: not a misassembly (possible transposable element) 35114055 35114931 283130 284006 NC_000014.9 scf214 99.77 True fake: not a misassembly (possible transposable element) 88547466 88549779 286388 284075 NC_000014.9 scf214 99.91 True fake: not a misassembly (possible transposable element) 35116591 35118669 286407 289240 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88539071 88545946 296123 289246 NC_000014.9 scf214 99.93 True relocation, inconsistency = 53407072 35123829 35131998 296124 304294 NC_000014.9 scf214 99.91 True fake: not a misassembly (possible transposable element) 88526296 88531657 309670 304313 NC_000014.9 scf214 99.83 True fake: not a misassembly (possible transposable element) 35135903 35142108 309671 315876 NC_000014.9 scf214 99.97 True fake: not a misassembly (possible transposable element) 88518443 88522443 320268 316239 NC_000014.9 scf214 99.08 True fake: not a misassembly (possible transposable element) 35146075 35148936 321340 324201 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 88514543 88515214 324875 324204 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35149129 35151730 325178 327775 NC_000014.9 scf214 99.73 True fake: not a misassembly (possible transposable element) 88509885 88512446 330337 327776 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35153382 35156981 330732 334185 NC_000014.9 scf214 95.64 True fake: not a misassembly (possible transposable element) 88506779 88507975 335412 334216 NC_000014.9 scf214 100.0 True fake: not a misassembly (possible transposable element) 35157392 35169154 335413 347966 NC_000014.9 scf214 98.91 True fake: scaffold gap size wrong estimation (local) 35169095 35171087 348728 350720 NC_000014.9 scf214 99.95 True relocation, inconsistency = 53316869 88487957 88492960 355724 350721 NC_000014.9 scf214 99.96 True indel: indel (> 5bp) 88486905 88487875 356768 355798 NC_000014.9 scf214 99.9 True fake: scaffold gap size wrong estimation (local) 88484224 88486832 360487 357879 NC_000014.9 scf214 99.92 True local misassembly 88483215 88484035 361308 360488 NC_000014.9 scf214 100.0 True fake: scaffold gap size wrong estimation (local) 88474909 88483088 371348 362341 NC_000014.9 scf214 99.46 True fake: scaffold gap size wrong estimation (local) 88464512 88474990 382566 372363 NC_000014.9 scf214 96.25 True fake: scaffold gap size wrong estimation (local) 88461463 88464536 386347 383274 NC_000014.9 scf214 99.97 True fake: scaffold gap size wrong estimation (local) 88460286 88460954 388333 387651 NC_000014.9 scf214 97.8 True CONTIG scf214 388333 misassembled 73291525 73293454 1929 1 NC_000014.9 scf215 99.84 True fake: scaffold gap size wrong estimation (local) 73284763 73291298 10378 3021 NC_000014.9 scf215 99.58 True fake: scaffold gap size wrong estimation (local) 73280113 73284855 16558 11040 NC_000014.9 scf215 99.94 True fake: scaffold gap size wrong estimation (local) 73271676 73279917 27114 16834 NC_000014.9 scf215 99.17 True fake: scaffold gap size wrong estimation (local) 73257985 73271735 41663 27914 NC_000014.9 scf215 99.94 True fake: scaffold gap size wrong estimation (local) 73256903 73257779 42849 41973 NC_000014.9 scf215 99.89 True fake: scaffold gap size wrong estimation (local) 73249681 73256467 51007 44220 NC_000014.9 scf215 99.99 True fake: scaffold gap size wrong estimation (local) 73230994 73249506 71898 52002 NC_000014.9 scf215 98.65 True fake: scaffold gap size wrong estimation (local) 73227213 73231086 76417 72642 NC_000014.9 scf215 96.56 True fake: scaffold gap size wrong estimation (local) 73218100 73227304 87784 77230 NC_000014.9 scf215 97.6 True fake: scaffold gap size wrong estimation (local) 73216511 73217994 90230 88747 NC_000014.9 scf215 100.0 True local misassembly 73215008 73216318 91541 90231 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73205470 73215105 102615 92477 NC_000014.9 scf215 97.71 True fake: scaffold gap size wrong estimation (local) 73202544 73205268 106234 103510 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73201291 73201871 107803 107223 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73197044 73201211 113015 108915 NC_000014.9 scf215 98.39 True fake: scaffold gap size wrong estimation (local) 73195356 73197096 115465 113774 NC_000014.9 scf215 97.19 True fake: scaffold gap size wrong estimation (local) 73189442 73195448 122192 116188 NC_000014.9 scf215 99.97 True fake: scaffold gap size wrong estimation (local) 73188093 73189539 124436 122990 NC_000014.9 scf215 100.0 True local misassembly 73186259 73187905 126083 124437 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73185516 73186333 127714 126897 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73181135 73183408 132702 130429 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73165577 73181231 149799 133410 NC_000014.9 scf215 98.9 True fake: scaffold gap size wrong estimation (local) 73162474 73165189 153673 150958 NC_000014.9 scf215 100.0 True fake: scaffold gap size wrong estimation (local) 73161874 73162573 155092 154394 NC_000014.9 scf215 99.86 True fake: scaffold gap size wrong estimation (local) 73156837 73161961 161210 156069 NC_000014.9 scf215 99.59 True CONTIG scf215 161210 correct 39526953 39528454 1 1502 NC_000014.9 scf216 99.8 True fake: scaffold gap size wrong estimation (local) 39528370 39550462 2183 25736 NC_000014.9 scf216 98.81 True CONTIG scf216 25736 correct 46152967 46161450 9269 1 NC_000014.9 scf217 99.85 True fake: scaffold gap size wrong estimation (local) 46142877 46152212 20051 10820 NC_000014.9 scf217 98.76 True fake: scaffold gap size wrong estimation (local) 46119245 46142971 45144 20714 NC_000014.9 scf217 99.92 True fake: scaffold gap size wrong estimation (local) 46114892 46119334 50322 45860 NC_000014.9 scf217 99.46 True fake: scaffold gap size wrong estimation (local) 46112680 46114709 53280 51248 NC_000014.9 scf217 99.75 True fake: scaffold gap size wrong estimation (local) 46109045 46112778 57753 54020 NC_000014.9 scf217 99.92 True fake: scaffold gap size wrong estimation (local) 46108003 46108735 59208 58463 NC_000014.9 scf217 97.99 True fake: scaffold gap size wrong estimation (local) 46105794 46107862 61500 59432 NC_000014.9 scf217 99.95 True fake: scaffold gap size wrong estimation (local) 46100977 46105890 67939 62047 NC_000014.9 scf217 98.2 True fake: scaffold gap size wrong estimation (local) 46100389 46101037 69389 68741 NC_000014.9 scf217 99.85 True CONTIG scf217 69412 correct 52214107 52218697 9 4605 NC_000014.9 scf218 99.65 True fake: scaffold gap size wrong estimation (local) 52218623 52226078 5441 12888 NC_000014.9 scf218 99.2 True fake: scaffold gap size wrong estimation (local) 52227567 52232192 15120 19745 NC_000014.9 scf218 99.83 True fake: scaffold gap size wrong estimation (local) 52232097 52254744 20428 45368 NC_000014.9 scf218 99.84 True CONTIG scf218 45410 correct 81851743 81859672 8666 1 NC_000014.9 scf219 99.57 True fake: scaffold gap size wrong estimation (local) 81829886 81851807 32034 9337 NC_000014.9 scf219 99.55 True fake: scaffold gap size wrong estimation (local) 81819742 81829624 44161 33072 NC_000014.9 scf219 97.81 True fake: scaffold gap size wrong estimation (local) 81815601 81819833 49089 44857 NC_000014.9 scf219 99.98 True fake: scaffold gap size wrong estimation (local) 81814079 81815517 51427 49989 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81808166 81814177 58128 52118 NC_000014.9 scf219 99.85 True fake: scaffold gap size wrong estimation (local) 81793531 81807962 74867 59629 NC_000014.9 scf219 99.21 True fake: scaffold gap size wrong estimation (local) 81787724 81793592 82521 75465 NC_000014.9 scf219 96.58 True fake: scaffold gap size wrong estimation (local) 81786039 81787872 85260 83383 NC_000014.9 scf219 97.39 True fake: scaffold gap size wrong estimation (local) 81784103 81786138 88172 86137 NC_000014.9 scf219 99.75 True fake: scaffold gap size wrong estimation (local) 81781871 81783985 91248 89134 NC_000014.9 scf219 100.0 True local misassembly 81780647 81781564 92166 91249 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81767059 81780730 107471 93043 NC_000014.9 scf219 99.61 True fake: scaffold gap size wrong estimation (local) 81760457 81767147 114781 108091 NC_000014.9 scf219 99.97 True fake: scaffold gap size wrong estimation (local) 81756404 81760540 120529 115477 NC_000014.9 scf219 99.76 True fake: scaffold gap size wrong estimation (local) 81754097 81756300 123611 121408 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81744279 81754190 134172 124261 NC_000014.9 scf219 99.96 True fake: scaffold gap size wrong estimation (local) 81728415 81744326 151633 134892 NC_000014.9 scf219 99.76 True fake: scaffold gap size wrong estimation (local) 81723459 81728513 157327 152273 NC_000014.9 scf219 99.98 True fake: scaffold gap size wrong estimation (local) 81714221 81723552 167325 157977 NC_000014.9 scf219 99.6 True fake: scaffold gap size wrong estimation (local) 81712824 81714316 169573 168081 NC_000014.9 scf219 99.87 True fake: scaffold gap size wrong estimation (local) 81707496 81712650 175732 170562 NC_000014.9 scf219 99.61 True fake: scaffold gap size wrong estimation (local) 81703218 81707158 180727 176783 NC_000014.9 scf219 99.85 True fake: scaffold gap size wrong estimation (local) 81699112 81703301 185594 181405 NC_000014.9 scf219 99.83 True fake: scaffold gap size wrong estimation (local) 81697158 81699211 188272 186219 NC_000014.9 scf219 99.95 True fake: scaffold gap size wrong estimation (local) 81687627 81697036 200220 189241 NC_000014.9 scf219 99.8 True fake: scaffold gap size wrong estimation (local) 81685728 81687488 202918 201158 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81679412 81685824 210968 203715 NC_000014.9 scf219 98.83 True fake: scaffold gap size wrong estimation (local) 81675552 81678899 215630 212283 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81672564 81675650 219365 216279 NC_000014.9 scf219 99.97 True fake: scaffold gap size wrong estimation (local) 81666670 81672456 226834 220186 NC_000014.9 scf219 99.54 True fake: scaffold gap size wrong estimation (local) 81664420 81666109 229858 228169 NC_000014.9 scf219 100.0 True local misassembly 81666116 81666744 231166 230538 NC_000014.9 scf219 100.0 True fake: scaffold gap size wrong estimation (local) 81658447 81664084 239727 233775 NC_000014.9 scf219 98.26 True fake: scaffold gap size wrong estimation (local) 81656395 81658544 242599 240450 NC_000014.9 scf219 99.95 True fake: scaffold gap size wrong estimation (local) 81650954 81656481 248851 243324 NC_000014.9 scf219 99.91 True fake: scaffold gap size wrong estimation (local) 81649945 81651042 250674 249577 NC_000014.9 scf219 99.91 True fake: scaffold gap size wrong estimation (local) 81647966 81649605 254485 252846 NC_000014.9 scf219 99.94 True fake: scaffold gap size wrong estimation (local) 81643261 81648048 260975 255391 NC_000014.9 scf219 99.73 True fake: scaffold gap size wrong estimation (local) 81641094 81643090 264047 262052 NC_000014.9 scf219 99.85 True fake: scaffold gap size wrong estimation (local) 81638514 81641161 267508 264852 NC_000014.9 scf219 99.44 True fake: scaffold gap size wrong estimation (local) 81637370 81638455 270650 269565 NC_000014.9 scf219 99.82 True local misassembly 81634130 81636063 272584 270651 NC_000014.9 scf219 95.97 True fake: scaffold gap size wrong estimation (local) 81632166 81634129 275344 273381 NC_000014.9 scf219 99.9 True indel: indel (<= 5bp) 81625889 81632165 281625 275349 NC_000014.9 scf219 99.98 True fake: scaffold gap size wrong estimation (local) 81624169 81625978 284126 282317 NC_000014.9 scf219 99.89 True fake: scaffold gap size wrong estimation (local) 81620778 81622822 288223 286179 NC_000014.9 scf219 99.9 True fake: scaffold gap size wrong estimation (local) 81616753 81620831 293048 288969 NC_000014.9 scf219 99.88 True fake: scaffold gap size wrong estimation (local) 81608518 81616850 304342 293666 NC_000014.9 scf219 99.0 True fake: scaffold gap size wrong estimation (local) 81603109 81608612 311476 305148 NC_000014.9 scf219 99.91 True fake: scaffold gap size wrong estimation (local) 81599811 81603201 315570 312180 NC_000014.9 scf219 99.82 True fake: scaffold gap size wrong estimation (local) 81597141 81599212 318987 316916 NC_000014.9 scf219 99.9 True fake: scaffold gap size wrong estimation (local) 81590636 81597238 327058 319671 NC_000014.9 scf219 97.57 True fake: scaffold gap size wrong estimation (local) 81582233 81590714 336338 327848 NC_000014.9 scf219 99.61 True fake: scaffold gap size wrong estimation (local) 81578562 81582054 340715 337203 NC_000014.9 scf219 99.35 True fake: scaffold gap size wrong estimation (local) 81576410 81578657 343595 341348 NC_000014.9 scf219 99.87 True fake: scaffold gap size wrong estimation (local) 81572179 81576505 348599 344289 NC_000014.9 scf219 99.58 True fake: scaffold gap size wrong estimation (local) 81570065 81572274 351517 349308 NC_000014.9 scf219 99.95 True fake: scaffold gap size wrong estimation (local) 81564952 81570162 357423 352216 NC_000014.9 scf219 99.92 True fake: scaffold gap size wrong estimation (local) 81554977 81564644 368181 358513 NC_000014.9 scf219 99.92 True fake: scaffold gap size wrong estimation (local) 81552529 81554337 371485 369677 NC_000014.9 scf219 99.94 True fake: scaffold gap size wrong estimation (local) 81549425 81552367 376830 373888 NC_000014.9 scf219 99.97 True fake: scaffold gap size wrong estimation (local) 81547898 81548409 379425 378914 NC_000014.9 scf219 100.0 True CONTIG scf219 379950 correct 21541585 21542756 1195 1 NC_000014.9 scf220 98.08 True fake: scaffold gap size wrong estimation (local) 21537993 21540218 5573 3348 NC_000014.9 scf220 100.0 True fake: scaffold gap size wrong estimation (local) 21532810 21538090 11586 6306 NC_000014.9 scf220 99.94 True fake: scaffold gap size wrong estimation (local) 21531485 21532584 14088 12989 NC_000014.9 scf220 100.0 True local misassembly 21530367 21531080 14802 14089 NC_000014.9 scf220 100.0 True fake: scaffold gap size wrong estimation (local) 21516840 21530309 29667 16215 NC_000014.9 scf220 99.82 True fake: scaffold gap size wrong estimation (local) 21514489 21516543 32874 30832 NC_000014.9 scf220 99.22 True fake: scaffold gap size wrong estimation (local) 21513322 21514084 35003 34241 NC_000014.9 scf220 99.74 True indel: stretch of mismatches 21512558 21513066 35767 35259 NC_000014.9 scf220 99.8 True fake: scaffold gap size wrong estimation (local) 21497730 21511722 53891 37352 NC_000014.9 scf220 98.02 True fake: scaffold gap size wrong estimation (local) 21496215 21497513 56285 54987 NC_000014.9 scf220 100.0 True local misassembly 21494813 21496004 57477 56286 NC_000014.9 scf220 100.0 True fake: scaffold gap size wrong estimation (local) 21493477 21494428 59790 58839 NC_000014.9 scf220 99.68 True local misassembly 21491973 21493249 61067 59791 NC_000014.9 scf220 99.77 True fake: scaffold gap size wrong estimation (local) 21485741 21491882 69278 63117 NC_000014.9 scf220 99.46 True fake: scaffold gap size wrong estimation (local) 21481245 21484361 72604 69439 NC_000014.9 scf220 98.26 True fake: scaffold gap size wrong estimation (local) 21480821 21481346 73960 73435 NC_000014.9 scf220 99.24 True indel: indel (> 5bp) 21479482 21480759 75356 74079 NC_000014.9 scf220 99.84 True fake: scaffold gap size wrong estimation (local) 21475434 21478833 80273 76834 NC_000014.9 scf220 98.66 True fake: scaffold gap size wrong estimation (local) 21474450 21475430 82111 81131 NC_000014.9 scf220 99.8 True local misassembly 21471899 21473751 84437 82585 NC_000014.9 scf220 99.68 True fake: scaffold gap size wrong estimation (local) 21470161 21470996 86118 85283 NC_000014.9 scf220 99.88 True fake: scaffold gap size wrong estimation (local) 21466972 21469967 90147 87152 NC_000014.9 scf220 100.0 True fake: scaffold gap size wrong estimation (local) 21462837 21467065 95313 91050 NC_000014.9 scf220 99.09 True fake: scaffold gap size wrong estimation (local) 21460592 21462720 98419 96237 NC_000014.9 scf220 97.48 True fake: scaffold gap size wrong estimation (local) 21457991 21460424 101802 99369 NC_000014.9 scf220 100.0 True local misassembly 21457068 21457570 102489 101987 NC_000014.9 scf220 100.0 True fake: scaffold gap size wrong estimation (local) 21454163 21456913 106331 103581 NC_000014.9 scf220 99.93 True CONTIG scf220 106333 correct 45444858 45474958 31916 1 NC_000014.9 scf221 98.98 True fake: scaffold gap size wrong estimation (local) 45432935 45444953 45309 32562 NC_000014.9 scf221 99.75 True fake: scaffold gap size wrong estimation (local) 45428661 45433033 50422 45928 NC_000014.9 scf221 95.95 True fake: scaffold gap size wrong estimation (local) 45424674 45428749 55357 51282 NC_000014.9 scf221 99.93 True fake: scaffold gap size wrong estimation (local) 45419178 45424766 62563 56040 NC_000014.9 scf221 98.19 True fake: scaffold gap size wrong estimation (local) 45417420 45418979 65218 63659 NC_000014.9 scf221 99.81 True local misassembly 45416367 45417023 65875 65219 NC_000014.9 scf221 100.0 True fake: scaffold gap size wrong estimation (local) 45414975 45415515 68369 67829 NC_000014.9 scf221 99.82 True CONTIG scf221 68373 correct 87405301 87414072 8773 3 NC_000014.9 scf222 99.92 True fake: scaffold gap size wrong estimation (local) 87392051 87405398 22755 9405 NC_000014.9 scf222 99.72 True fake: scaffold gap size wrong estimation (local) 87378525 87391677 36655 23507 NC_000014.9 scf222 99.73 True fake: scaffold gap size wrong estimation (local) 87373512 87378356 42449 37567 NC_000014.9 scf222 99.06 True fake: scaffold gap size wrong estimation (local) 87360788 87373388 56889 43523 NC_000014.9 scf222 99.86 True CONTIG scf222 56889 correct 59885100 59891161 6062 1 NC_000014.9 scf223 99.9 True fake: scaffold gap size wrong estimation (local) 59876121 59885195 16528 6700 NC_000014.9 scf223 99.85 True fake: scaffold gap size wrong estimation (local) 59864568 59874361 27855 17309 NC_000014.9 scf223 99.86 True fake: scaffold gap size wrong estimation (local) 59842009 59864650 51901 28488 NC_000014.9 scf223 99.75 True fake: scaffold gap size wrong estimation (local) 59831323 59841534 63276 53065 NC_000014.9 scf223 99.99 True fake: scaffold gap size wrong estimation (local) 59827263 59831418 68172 64017 NC_000014.9 scf223 99.93 True fake: scaffold gap size wrong estimation (local) 59800469 59827334 97185 68893 NC_000014.9 scf223 99.83 True fake: scaffold gap size wrong estimation (local) 59795461 59800552 102941 97850 NC_000014.9 scf223 99.94 True fake: scaffold gap size wrong estimation (local) 59777776 59795558 122932 103626 NC_000014.9 scf223 99.76 True fake: scaffold gap size wrong estimation (local) 59775976 59777820 125557 123713 NC_000014.9 scf223 99.62 True fake: scaffold gap size wrong estimation (local) 59770998 59776046 131353 126305 NC_000014.9 scf223 99.96 True fake: scaffold gap size wrong estimation (local) 59755980 59771076 150248 132496 NC_000014.9 scf223 99.33 True fake: scaffold gap size wrong estimation (local) 59751221 59756060 155756 150917 NC_000014.9 scf223 99.98 True fake: scaffold gap size wrong estimation (local) 59750721 59751274 156976 156424 NC_000014.9 scf223 99.46 True CONTIG scf223 156988 correct 71219611 71222451 4 2844 NC_000014.9 scf224 99.93 True fake: scaffold gap size wrong estimation (local) 71222361 71232366 3475 14241 NC_000014.9 scf224 99.53 True fake: scaffold gap size wrong estimation (local) 71232267 71233878 15032 16643 NC_000014.9 scf224 99.69 True local misassembly 71234080 71235362 16650 17932 NC_000014.9 scf224 99.84 True fake: scaffold gap size wrong estimation (local) 71235646 71237262 18974 20591 NC_000014.9 scf224 99.88 True fake: scaffold gap size wrong estimation (local) 71237435 71238396 22045 23006 NC_000014.9 scf224 99.58 True local misassembly 71239101 71239757 23171 23827 NC_000014.9 scf224 100.0 True fake: scaffold gap size wrong estimation (local) 71239665 71249059 25271 34663 NC_000014.9 scf224 99.94 True fake: scaffold gap size wrong estimation (local) 71249150 71251630 35562 38042 NC_000014.9 scf224 99.92 True fake: scaffold gap size wrong estimation (local) 71252373 71254363 39598 41569 NC_000014.9 scf224 98.9 True fake: scaffold gap size wrong estimation (local) 71254808 71263288 42831 52061 NC_000014.9 scf224 99.75 True fake: scaffold gap size wrong estimation (local) 71263195 71266763 52779 56347 NC_000014.9 scf224 99.89 True fake: scaffold gap size wrong estimation (local) 71266664 71271908 57020 62264 NC_000014.9 scf224 99.87 True fake: scaffold gap size wrong estimation (local) 71272054 71277428 63201 68575 NC_000014.9 scf224 99.89 True fake: scaffold gap size wrong estimation (local) 71277334 71279668 69351 71630 NC_000014.9 scf224 97.64 True fake: scaffold gap size wrong estimation (local) 71279576 71283333 72421 76178 NC_000014.9 scf224 99.95 True fake: scaffold gap size wrong estimation (local) 71283252 71290108 76905 84512 NC_000014.9 scf224 99.82 True fake: scaffold gap size wrong estimation (local) 71290616 71311727 87021 110483 NC_000014.9 scf224 99.12 True fake: scaffold gap size wrong estimation (local) 71312460 71314486 112055 114218 NC_000014.9 scf224 95.34 True fake: scaffold gap size wrong estimation (local) 71314388 71318570 115304 119494 NC_000014.9 scf224 99.76 True fake: scaffold gap size wrong estimation (local) 71318700 71326359 120411 128070 NC_000014.9 scf224 99.95 True fake: scaffold gap size wrong estimation (local) 71326430 71329475 128931 131937 NC_000014.9 scf224 96.97 True fake: scaffold gap size wrong estimation (local) 71329378 71339025 132645 142292 NC_000014.9 scf224 99.99 True fake: scaffold gap size wrong estimation (local) 71338938 71340926 142977 144964 NC_000014.9 scf224 99.95 True fake: scaffold gap size wrong estimation (local) 71340832 71345601 145633 150402 NC_000014.9 scf224 99.96 True fake: scaffold gap size wrong estimation (local) 71346201 71347031 152348 153178 NC_000014.9 scf224 100.0 True local misassembly 71347663 71350232 153179 155748 NC_000014.9 scf224 100.0 True fake: scaffold gap size wrong estimation (local) 71350233 71351618 156475 157860 NC_000014.9 scf224 100.0 True indel: indel (<= 5bp) 71351620 71354291 157861 160532 NC_000014.9 scf224 99.96 True fake: scaffold gap size wrong estimation (local) 71354292 71356567 161378 163653 NC_000014.9 scf224 100.0 True fake: scaffold gap size wrong estimation (local) 71356568 71357835 164178 165445 NC_000014.9 scf224 99.92 True fake: scaffold gap size wrong estimation (local) 71357736 71367753 166396 177123 NC_000014.9 scf224 97.02 True CONTIG scf224 177123 correct 47559578 47570710 11 12858 NC_000014.9 scf225 99.84 True fake: scaffold gap size wrong estimation (local) 47571582 47573188 14494 16100 NC_000014.9 scf225 99.94 True fake: scaffold gap size wrong estimation (local) 47573088 47577119 16738 20769 NC_000014.9 scf225 100.0 True fake: scaffold gap size wrong estimation (local) 47577033 47586884 21412 31263 NC_000014.9 scf225 99.92 True fake: scaffold gap size wrong estimation (local) 47586793 47605179 31954 51882 NC_000014.9 scf225 99.74 True fake: scaffold gap size wrong estimation (local) 47605093 47611390 52556 59672 NC_000014.9 scf225 99.95 True fake: scaffold gap size wrong estimation (local) 47612210 47627162 61268 78352 NC_000014.9 scf225 99.89 True fake: scaffold gap size wrong estimation (local) 47627581 47636654 79535 88609 NC_000014.9 scf225 99.88 True fake: scaffold gap size wrong estimation (local) 47636790 47649713 89481 103093 NC_000014.9 scf225 99.67 True fake: scaffold gap size wrong estimation (local) 47649631 47665821 103724 120707 NC_000014.9 scf225 99.75 True fake: scaffold gap size wrong estimation (local) 47666384 47673733 122577 129958 NC_000014.9 scf225 99.3 True fake: scaffold gap size wrong estimation (local) 47673643 47689764 130673 148346 NC_000014.9 scf225 99.61 True fake: scaffold gap size wrong estimation (local) 47689936 47701408 149320 160828 NC_000014.9 scf225 99.24 True fake: scaffold gap size wrong estimation (local) 47701315 47705515 161493 165693 NC_000014.9 scf225 99.74 True fake: scaffold gap size wrong estimation (local) 47705426 47710886 166427 172720 NC_000014.9 scf225 99.85 True fake: scaffold gap size wrong estimation (local) 47710802 47716226 173374 178798 NC_000014.9 scf225 99.96 True fake: scaffold gap size wrong estimation (local) 47716143 47725983 179500 190053 NC_000014.9 scf225 98.48 True fake: scaffold gap size wrong estimation (local) 47726188 47737799 191076 202676 NC_000014.9 scf225 99.83 True fake: scaffold gap size wrong estimation (local) 47737709 47741916 203332 207535 NC_000014.9 scf225 99.74 True fake: scaffold gap size wrong estimation (local) 47742001 47754835 208383 222852 NC_000014.9 scf225 99.26 True fake: scaffold gap size wrong estimation (local) 47754746 47758066 223595 226914 NC_000014.9 scf225 99.94 True fake: scaffold gap size wrong estimation (local) 47757981 47760448 227645 230112 NC_000014.9 scf225 99.92 True fake: scaffold gap size wrong estimation (local) 47760785 47764263 231204 234684 NC_000014.9 scf225 99.94 True fake: scaffold gap size wrong estimation (local) 47764392 47769932 235597 241892 NC_000014.9 scf225 99.96 True fake: scaffold gap size wrong estimation (local) 47769881 47772929 242572 245525 NC_000014.9 scf225 96.79 True fake: scaffold gap size wrong estimation (local) 47772830 47776893 246192 250255 NC_000014.9 scf225 99.95 True fake: scaffold gap size wrong estimation (local) 47776795 47779986 250873 254064 NC_000014.9 scf225 99.97 True fake: scaffold gap size wrong estimation (local) 47780171 47786412 254994 261233 NC_000014.9 scf225 99.9 True fake: scaffold gap size wrong estimation (local) 47786543 47789420 262168 265045 NC_000014.9 scf225 99.9 True fake: scaffold gap size wrong estimation (local) 47789322 47792206 265687 268571 NC_000014.9 scf225 99.93 True fake: scaffold gap size wrong estimation (local) 47792128 47793688 269476 271036 NC_000014.9 scf225 99.87 True CONTIG scf225 271036 correct 62541858 62552098 18 10255 NC_000014.9 scf226 99.81 True fake: scaffold gap size wrong estimation (local) 62552041 62559086 10986 18030 NC_000014.9 scf226 99.89 True fake: scaffold gap size wrong estimation (local) 62558992 62559871 18714 19593 NC_000014.9 scf226 99.77 True fake: scaffold gap size wrong estimation (local) 62560973 62570785 21829 31648 NC_000014.9 scf226 99.38 True fake: scaffold gap size wrong estimation (local) 62570699 62593661 32408 56859 NC_000014.9 scf226 98.71 True fake: scaffold gap size wrong estimation (local) 62593586 62601929 57582 66802 NC_000014.9 scf226 99.5 True fake: scaffold gap size wrong estimation (local) 62601844 62610388 67548 76092 NC_000014.9 scf226 99.92 True fake: scaffold gap size wrong estimation (local) 62610950 62616480 77518 83047 NC_000014.9 scf226 99.67 True fake: scaffold gap size wrong estimation (local) 62616437 62617970 83828 85361 NC_000014.9 scf226 99.22 True indel: indel (> 5bp) 62618052 62618806 85362 86116 NC_000014.9 scf226 99.87 True fake: scaffold gap size wrong estimation (local) 62619013 62621285 87152 89424 NC_000014.9 scf226 99.69 True fake: scaffold gap size wrong estimation (local) 62621186 62622942 90216 91972 NC_000014.9 scf226 99.77 True fake: scaffold gap size wrong estimation (local) 62623878 62624444 93902 94468 NC_000014.9 scf226 100.0 True local misassembly 62625197 62625873 94900 95576 NC_000014.9 scf226 100.0 True fake: scaffold gap size wrong estimation (local) 62625790 62633357 96868 104453 NC_000014.9 scf226 99.58 True fake: scaffold gap size wrong estimation (local) 62633260 62634450 105188 106378 NC_000014.9 scf226 99.16 True local misassembly 62635110 62636505 106873 108268 NC_000014.9 scf226 99.79 True CONTIG scf226 108268 correct 32115829 32116411 583 1 NC_000014.9 scf227 100.0 True relocation, inconsistency = -70841209 102950880 102957037 6756 584 NC_000014.9 scf227 99.71 True fake: scaffold gap size wrong estimation (local) 102948637 102950974 9809 7472 NC_000014.9 scf227 99.91 True fake: scaffold gap size wrong estimation (local) 102939148 102948206 21758 11121 NC_000014.9 scf227 99.05 True fake: scaffold gap size wrong estimation (local) 102935537 102939036 26118 22619 NC_000014.9 scf227 99.97 True fake: scaffold gap size wrong estimation (local) 102930370 102935631 33456 27427 NC_000014.9 scf227 95.14 True fake: scaffold gap size wrong estimation (local) 102921507 102930415 43871 34220 NC_000014.9 scf227 99.62 True fake: scaffold gap size wrong estimation (local) 102916256 102919743 49777 46294 NC_000014.9 scf227 99.83 True fake: scaffold gap size wrong estimation (local) 102913354 102916321 53468 50501 NC_000014.9 scf227 99.9 True fake: scaffold gap size wrong estimation (local) 102904904 102913117 62669 54456 NC_000014.9 scf227 99.96 True fake: scaffold gap size wrong estimation (local) 102900264 102904572 68059 63751 NC_000014.9 scf227 99.93 True fake: scaffold gap size wrong estimation (local) 102887599 102900016 82265 69082 NC_000014.9 scf227 99.76 True fake: scaffold gap size wrong estimation (local) 102881397 102887690 89170 82876 NC_000014.9 scf227 99.94 True fake: scaffold gap size wrong estimation (local) 102874294 102881484 97769 90035 NC_000014.9 scf227 97.45 True fake: scaffold gap size wrong estimation (local) 102872912 102874392 100022 98542 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102866186 102873011 108297 100701 NC_000014.9 scf227 99.88 True fake: scaffold gap size wrong estimation (local) 102853615 102866067 123285 109173 NC_000014.9 scf227 99.87 True fake: scaffold gap size wrong estimation (local) 102851672 102853692 126089 124069 NC_000014.9 scf227 99.95 True fake: scaffold gap size wrong estimation (local) 102846639 102851726 134065 128949 NC_000014.9 scf227 99.39 True fake: scaffold gap size wrong estimation (local) 102846011 102846671 135502 134842 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102837151 102845528 144998 135848 NC_000014.9 scf227 99.68 True fake: scaffold gap size wrong estimation (local) 102834598 102837249 148440 145800 NC_000014.9 scf227 99.47 True fake: scaffold gap size wrong estimation (local) 102833995 102834501 150334 149828 NC_000014.9 scf227 100.0 True local misassembly 102832413 102833372 151401 150442 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102823007 102832412 162254 152849 NC_000014.9 scf227 99.94 True fake: scaffold gap size wrong estimation (local) 102813451 102822876 173560 163262 NC_000014.9 scf227 98.89 True fake: scaffold gap size wrong estimation (local) 102811928 102812719 175865 175074 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102809712 102811574 177850 175988 NC_000014.9 scf227 99.95 True fake: scaffold gap size wrong estimation (local) 102802358 102809300 186049 178354 NC_000014.9 scf227 99.27 True fake: scaffold gap size wrong estimation (local) 102801039 102801560 188759 188238 NC_000014.9 scf227 99.81 True local misassembly 102799580 102800218 189398 188760 NC_000014.9 scf227 99.84 True fake: scaffold gap size wrong estimation (local) 102797906 102799579 191339 189666 NC_000014.9 scf227 99.94 True fake: scaffold gap size wrong estimation (local) 102794166 102797788 197302 192688 NC_000014.9 scf227 99.58 True fake: scaffold gap size wrong estimation (local) 102792434 102794259 199915 198090 NC_000014.9 scf227 100.0 True local misassembly 102791121 102791847 200970 200244 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102789814 102791162 203379 202031 NC_000014.9 scf227 100.0 True local misassembly 102788537 102789594 204499 203442 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102787944 102788536 205331 204739 NC_000014.9 scf227 99.83 True fake: scaffold gap size wrong estimation (local) 102782114 102787938 213085 206473 NC_000014.9 scf227 99.1 True fake: scaffold gap size wrong estimation (local) 102778598 102781808 217484 214290 NC_000014.9 scf227 99.41 True fake: scaffold gap size wrong estimation (local) 102777867 102778696 219202 218373 NC_000014.9 scf227 99.88 True fake: scaffold gap size wrong estimation (local) 102774095 102777162 222912 219677 NC_000014.9 scf227 96.3 True fake: scaffold gap size wrong estimation (local) 102767793 102774188 230285 223864 NC_000014.9 scf227 99.35 True fake: scaffold gap size wrong estimation (local) 102767294 102767882 232134 231546 NC_000014.9 scf227 100.0 True local misassembly 102766019 102766804 232920 232135 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102763810 102765236 236221 234795 NC_000014.9 scf227 99.79 True fake: scaffold gap size wrong estimation (local) 102761918 102762855 238101 237165 NC_000014.9 scf227 99.79 True fake: scaffold gap size wrong estimation (local) 102758684 102761769 242211 239104 NC_000014.9 scf227 99.29 True fake: scaffold gap size wrong estimation (local) 102751616 102758482 250987 243320 NC_000014.9 scf227 99.97 True fake: scaffold gap size wrong estimation (local) 102748521 102751708 254896 251709 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102745364 102748415 258878 255827 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102742660 102743953 262203 260910 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102725795 102742541 282293 262963 NC_000014.9 scf227 99.44 True fake: scaffold gap size wrong estimation (local) 102724312 102725891 284686 283097 NC_000014.9 scf227 99.37 True fake: scaffold gap size wrong estimation (local) 102719462 102724410 290303 285355 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102712249 102719534 299486 291015 NC_000014.9 scf227 98.58 True fake: scaffold gap size wrong estimation (local) 102708165 102712344 304690 300511 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102701736 102707912 312647 305673 NC_000014.9 scf227 99.32 True fake: scaffold gap size wrong estimation (local) 102700316 102701821 314964 313459 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102697931 102700403 318177 315705 NC_000014.9 scf227 100.0 True fake: scaffold gap size wrong estimation (local) 102678363 102698027 341873 319011 NC_000014.9 scf227 97.95 True CONTIG scf227 341873 misassembled 43583025 43598064 15787 1 NC_000014.9 scf228 99.84 True fake: scaffold gap size wrong estimation (local) 43581065 43583123 18633 16575 NC_000014.9 scf228 100.0 True fake: scaffold gap size wrong estimation (local) 43578900 43580665 21619 19854 NC_000014.9 scf228 100.0 True fake: scaffold gap size wrong estimation (local) 43572389 43578776 28953 22566 NC_000014.9 scf228 99.95 True fake: scaffold gap size wrong estimation (local) 43568980 43572481 33033 29527 NC_000014.9 scf228 98.98 True fake: scaffold gap size wrong estimation (local) 43567331 43569075 35212 33468 NC_000014.9 scf228 100.0 True fake: scaffold gap size wrong estimation (local) 43566519 43567245 36214 35490 NC_000014.9 scf228 99.72 True fake: scaffold gap size wrong estimation (local) 43563970 43566336 39328 36970 NC_000014.9 scf228 99.66 True fake: scaffold gap size wrong estimation (local) 43559689 43564055 45341 40118 NC_000014.9 scf228 99.68 True fake: scaffold gap size wrong estimation (local) 43548821 43559546 59816 46194 NC_000014.9 scf228 99.25 True fake: scaffold gap size wrong estimation (local) 43536700 43548916 74376 60524 NC_000014.9 scf228 99.3 True fake: scaffold gap size wrong estimation (local) 43534506 43536794 77400 75116 NC_000014.9 scf228 99.61 True fake: scaffold gap size wrong estimation (local) 43524786 43533454 87916 79252 NC_000014.9 scf228 99.86 True fake: scaffold gap size wrong estimation (local) 43523382 43524690 90084 88776 NC_000014.9 scf228 100.0 True fake: scaffold gap size wrong estimation (local) 43513586 43523473 101556 91652 NC_000014.9 scf228 99.8 True fake: scaffold gap size wrong estimation (local) 43511964 43513046 103871 102789 NC_000014.9 scf228 100.0 True fake: scaffold gap size wrong estimation (local) 43508964 43510542 107605 106031 NC_000014.9 scf228 99.75 True fake: scaffold gap size wrong estimation (local) 43498111 43508421 120349 109254 NC_000014.9 scf228 99.77 True CONTIG scf228 120349 correct 86595647 86608583 7 12958 NC_000014.9 scf229 99.83 True fake: scaffold gap size wrong estimation (local) 86609076 86609665 14251 14840 NC_000014.9 scf229 100.0 True fake: scaffold gap size wrong estimation (local) 86611770 86614382 17560 20171 NC_000014.9 scf229 99.92 True fake: scaffold gap size wrong estimation (local) 86614316 86619591 20988 27057 NC_000014.9 scf229 98.78 True fake: scaffold gap size wrong estimation (local) 86619715 86628102 27927 36322 NC_000014.9 scf229 99.85 True fake: scaffold gap size wrong estimation (local) 86628004 86636480 37826 46336 NC_000014.9 scf229 99.54 True CONTIG scf229 46336 correct 37551804 37554010 2210 4 NC_000014.9 scf230 99.91 True fake: scaffold gap size wrong estimation (local) 37533953 37551856 21717 3040 NC_000014.9 scf230 99.96 True fake: scaffold gap size wrong estimation (local) 37530825 37534049 25598 22374 NC_000014.9 scf230 99.97 True fake: scaffold gap size wrong estimation (local) 37514725 37530916 43209 26268 NC_000014.9 scf230 99.91 True fake: scaffold gap size wrong estimation (local) 37512305 37514643 46394 44056 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37507365 37512382 52121 47101 NC_000014.9 scf230 99.86 True fake: scaffold gap size wrong estimation (local) 37506759 37507456 53612 52915 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37504941 37506504 55298 53735 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37502370 37503852 58652 56935 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37497206 37502468 64803 59541 NC_000014.9 scf230 99.92 True fake: scaffold gap size wrong estimation (local) 37489965 37495233 72572 67286 NC_000014.9 scf230 99.58 True fake: scaffold gap size wrong estimation (local) 37488804 37489647 74815 73972 NC_000014.9 scf230 100.0 True local misassembly 37488039 37488613 75390 74816 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37486648 37487686 76990 75952 NC_000014.9 scf230 99.9 True fake: scaffold gap size wrong estimation (local) 37485464 37486744 78919 77639 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37484339 37485207 80530 79662 NC_000014.9 scf230 100.0 True fake: scaffold gap size wrong estimation (local) 37475086 37484429 92396 81452 NC_000014.9 scf230 98.78 True fake: scaffold gap size wrong estimation (local) 37467871 37475173 100429 93127 NC_000014.9 scf230 99.95 True fake: scaffold gap size wrong estimation (local) 37458800 37467951 110440 101136 NC_000014.9 scf230 99.41 True fake: scaffold gap size wrong estimation (local) 37452025 37458875 118283 111433 NC_000014.9 scf230 99.97 True fake: scaffold gap size wrong estimation (local) 37447012 37451825 124110 119297 NC_000014.9 scf230 100.0 True CONTIG scf230 124110 correct 57670916 57676357 1 5440 NC_000014.9 scf231 99.65 True fake: scaffold gap size wrong estimation (local) 57676260 57677418 6126 7284 NC_000014.9 scf231 99.91 True indel: indel (<= 5bp) 57677804 57678384 7673 8253 NC_000014.9 scf231 98.8 True local misassembly 57678550 57679333 8254 9037 NC_000014.9 scf231 99.87 True fake: scaffold gap size wrong estimation (local) 57679841 57680809 10430 11398 NC_000014.9 scf231 99.69 True indel: indel (> 5bp) 57681058 57681678 11719 12339 NC_000014.9 scf231 100.0 True fake: scaffold gap size wrong estimation (local) 57682639 57693752 14291 26183 NC_000014.9 scf231 99.86 True fake: scaffold gap size wrong estimation (local) 57693662 57695100 26886 28324 NC_000014.9 scf231 99.93 True fake: scaffold gap size wrong estimation (local) 57696453 57709512 30459 44368 NC_000014.9 scf231 99.35 True fake: scaffold gap size wrong estimation (local) 57709468 57723149 45069 60842 NC_000014.9 scf231 98.88 True fake: scaffold gap size wrong estimation (local) 57723534 57724210 62223 62899 NC_000014.9 scf231 99.41 True local misassembly 57724542 57725339 62900 63697 NC_000014.9 scf231 99.75 True fake: scaffold gap size wrong estimation (local) 57725242 57741019 64769 81004 NC_000014.9 scf231 97.09 True fake: scaffold gap size wrong estimation (local) 57741408 57742063 82292 82944 NC_000014.9 scf231 99.54 True CONTIG scf231 82961 correct 20504688 20505282 606 12 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20498139 20504528 8623 1456 NC_000014.9 scf232 99.44 True fake: scaffold gap size wrong estimation (local) 20497339 20497932 10241 9648 NC_000014.9 scf232 99.83 True local misassembly 20494944 20497243 12541 10242 NC_000014.9 scf232 99.91 True fake: scaffold gap size wrong estimation (local) 20494372 20494943 13258 12687 NC_000014.9 scf232 99.48 True fake: scaffold gap size wrong estimation (local) 20493009 20494078 15828 14759 NC_000014.9 scf232 99.91 True local misassembly 20491443 20492823 17209 15829 NC_000014.9 scf232 99.42 True fake: scaffold gap size wrong estimation (local) 20477777 20491243 33358 18308 NC_000014.9 scf232 99.81 True fake: scaffold gap size wrong estimation (local) 20473688 20477874 38190 34004 NC_000014.9 scf232 99.95 True fake: scaffold gap size wrong estimation (local) 20471272 20473776 41396 38887 NC_000014.9 scf232 99.76 True fake: scaffold gap size wrong estimation (local) 20468342 20471129 45079 42292 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20465878 20468438 48385 45825 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20451465 20465975 64535 49182 NC_000014.9 scf232 99.93 True fake: scaffold gap size wrong estimation (local) 20445982 20451114 70739 65586 NC_000014.9 scf232 99.36 True fake: scaffold gap size wrong estimation (local) 20443725 20446069 73798 71454 NC_000014.9 scf232 99.87 True fake: scaffold gap size wrong estimation (local) 20439549 20443351 78752 74950 NC_000014.9 scf232 99.92 True fake: scaffold gap size wrong estimation (local) 20427984 20439274 91830 79893 NC_000014.9 scf232 97.61 True fake: scaffold gap size wrong estimation (local) 20427106 20428049 93973 93030 NC_000014.9 scf232 99.89 True fake: scaffold gap size wrong estimation (local) 20412776 20426378 111385 95663 NC_000014.9 scf232 98.68 True fake: scaffold gap size wrong estimation (local) 20410830 20412850 114185 112166 NC_000014.9 scf232 99.85 True fake: scaffold gap size wrong estimation (local) 20410023 20410556 115195 114662 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20406001 20409825 120177 116353 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20404358 20405897 122691 121152 NC_000014.9 scf232 100.0 True local misassembly 20403162 20404086 123616 122692 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20400148 20402929 127583 124804 NC_000014.9 scf232 99.86 True fake: scaffold gap size wrong estimation (local) 20398168 20399657 130393 128904 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20374887 20398247 156892 131210 NC_000014.9 scf232 99.51 True fake: scaffold gap size wrong estimation (local) 20370162 20374950 163353 157685 NC_000014.9 scf232 99.13 True fake: scaffold gap size wrong estimation (local) 20369195 20370256 165309 164248 NC_000014.9 scf232 100.0 True local misassembly 20367731 20368984 166563 165310 NC_000014.9 scf232 99.92 True fake: scaffold gap size wrong estimation (local) 20367089 20367778 168560 167871 NC_000014.9 scf232 100.0 True local misassembly 20365386 20366607 169782 168561 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20358465 20365385 177576 170656 NC_000014.9 scf232 99.97 True fake: scaffold gap size wrong estimation (local) 20353403 20358557 183392 178238 NC_000014.9 scf232 99.98 True fake: scaffold gap size wrong estimation (local) 20347666 20353299 191353 185659 NC_000014.9 scf232 98.91 True fake: scaffold gap size wrong estimation (local) 20337510 20347278 203172 192607 NC_000014.9 scf232 99.79 True fake: scaffold gap size wrong estimation (local) 20330684 20337570 210991 203886 NC_000014.9 scf232 99.9 True fake: scaffold gap size wrong estimation (local) 20325309 20330781 217298 211826 NC_000014.9 scf232 100.0 True fake: scaffold gap size wrong estimation (local) 20320918 20325192 222391 218214 NC_000014.9 scf232 97.71 True fake: scaffold gap size wrong estimation (local) 20315141 20320819 229739 223281 NC_000014.9 scf232 99.79 True fake: scaffold gap size wrong estimation (local) 20311299 20314906 234361 230755 NC_000014.9 scf232 99.92 True fake: scaffold gap size wrong estimation (local) 20307273 20309470 238942 236759 NC_000014.9 scf232 99.14 True fake: scaffold gap size wrong estimation (local) 20300178 20307128 248278 239804 NC_000014.9 scf232 98.57 True fake: scaffold gap size wrong estimation (local) 20296681 20299708 252552 249536 NC_000014.9 scf232 98.65 True fake: scaffold gap size wrong estimation (local) 20286099 20296772 263892 253223 NC_000014.9 scf232 99.8 True CONTIG scf232 263892 correct 39552445 39554052 1 1620 NC_000014.9 scf233 99.07 True fake: scaffold gap size wrong estimation (local) 39553969 39560512 2354 8895 NC_000014.9 scf233 99.89 True fake: scaffold gap size wrong estimation (local) 39560831 39564386 9984 13540 NC_000014.9 scf233 99.78 True fake: scaffold gap size wrong estimation (local) 39564375 39565067 14421 15113 NC_000014.9 scf233 100.0 True fake: scaffold gap size wrong estimation (local) 39565307 39571470 15202 21365 NC_000014.9 scf233 99.92 True fake: scaffold gap size wrong estimation (local) 39571376 39583900 22069 34593 NC_000014.9 scf233 99.93 True CONTIG scf233 34613 correct 23921705 23936906 1 15942 NC_000014.9 scf234 99.22 True fake: scaffold gap size wrong estimation (local) 23937305 23940045 17119 19861 NC_000014.9 scf234 99.89 True fake: scaffold gap size wrong estimation (local) 23940489 23943150 21050 23711 NC_000014.9 scf234 99.96 True fake: scaffold gap size wrong estimation (local) 23944887 23946352 26154 27619 NC_000014.9 scf234 100.0 True fake: scaffold gap size wrong estimation (local) 23946263 23947492 28399 29628 NC_000014.9 scf234 99.92 True fake: scaffold gap size wrong estimation (local) 23948410 23948970 30758 31318 NC_000014.9 scf234 100.0 True fake: scaffold gap size wrong estimation (local) 23948882 23952875 32389 36493 NC_000014.9 scf234 97.3 True fake: scaffold gap size wrong estimation (local) 23953080 23954756 37524 39232 NC_000014.9 scf234 98.13 True fake: scaffold gap size wrong estimation (local) 23955705 23956424 41220 41974 NC_000014.9 scf234 95.36 True CONTIG scf234 41974 correct 104862311 104865071 1 2758 NC_000014.9 scf235 99.71 True fake: scaffold gap size wrong estimation (local) 104865309 104872299 3767 10758 NC_000014.9 scf235 99.83 True fake: scaffold gap size wrong estimation (local) 104872361 104884689 11593 23934 NC_000014.9 scf235 99.22 True fake: scaffold gap size wrong estimation (local) 104885009 104889985 24939 29903 NC_000014.9 scf235 99.58 True fake: scaffold gap size wrong estimation (local) 104891026 104897072 32120 38167 NC_000014.9 scf235 99.8 True fake: scaffold gap size wrong estimation (local) 104897218 104899597 39188 41567 NC_000014.9 scf235 99.92 True fake: scaffold gap size wrong estimation (local) 104899594 104900584 42542 43532 NC_000014.9 scf235 99.9 True local misassembly 104900791 104902103 43553 44865 NC_000014.9 scf235 100.0 True fake: scaffold gap size wrong estimation (local) 104902016 104903127 46021 47132 NC_000014.9 scf235 99.82 True local misassembly 104903615 104905321 47133 48839 NC_000014.9 scf235 99.94 True fake: scaffold gap size wrong estimation (local) 104906916 104909615 51099 53798 NC_000014.9 scf235 99.93 True CONTIG scf235 53798 correct 106486428 106492297 4970 10839 NC_000014.9 scf236 99.86 True fake: scaffold gap size wrong estimation (local) 106492232 106498290 11561 18427 NC_000014.9 scf236 99.87 True fake: scaffold gap size wrong estimation (local) 106498779 106508564 20363 30178 NC_000014.9 scf236 99.27 True fake: scaffold gap size wrong estimation (local) 106508997 106515505 31391 37901 NC_000014.9 scf236 99.68 True fake: scaffold gap size wrong estimation (local) 106515410 106522207 38700 45379 NC_000014.9 scf236 97.65 True fake: scaffold gap size wrong estimation (local) 106522111 106522726 46229 46844 NC_000014.9 scf236 98.86 True local misassembly 106522842 106523971 46874 48003 NC_000014.9 scf236 99.2 True fake: scaffold gap size wrong estimation (local) 106523990 106536293 48894 61254 NC_000014.9 scf236 99.31 True fake: scaffold gap size wrong estimation (local) 106536195 106537718 61922 63447 NC_000014.9 scf236 99.41 True fake: scaffold gap size wrong estimation (local) 106538039 106540664 64559 67177 NC_000014.9 scf236 98.97 True fake: scaffold gap size wrong estimation (local) 106540661 106541212 68096 68647 NC_000014.9 scf236 99.46 True local misassembly 106541868 106543079 69078 70289 NC_000014.9 scf236 99.26 True indel: indel (<= 5bp) 106543082 106543732 70290 70940 NC_000014.9 scf236 99.69 True fake: scaffold gap size wrong estimation (local) 106543995 106548827 71996 76832 NC_000014.9 scf236 99.46 True fake: scaffold gap size wrong estimation (local) 106548740 106555316 77496 84093 NC_000014.9 scf236 99.44 True fake: scaffold gap size wrong estimation (local) 106555494 106556237 84992 85735 NC_000014.9 scf236 99.6 True fake: scaffold gap size wrong estimation (local) 106556966 106558109 87458 88601 NC_000014.9 scf236 99.65 True fake: scaffold gap size wrong estimation (local) 106558598 106563802 89849 96058 NC_000014.9 scf236 96.34 True fake: scaffold gap size wrong estimation (local) 106564026 106566486 97114 99574 NC_000014.9 scf236 99.84 True fake: scaffold gap size wrong estimation (local) 106566398 106569327 100312 103241 NC_000014.9 scf236 99.76 True fake: scaffold gap size wrong estimation (local) 106569415 106572056 104063 106704 NC_000014.9 scf236 99.92 True fake: scaffold gap size wrong estimation (local) 106571962 106574803 107412 110253 NC_000014.9 scf236 99.93 True fake: scaffold gap size wrong estimation (local) 106574713 106578143 110941 114372 NC_000014.9 scf236 99.94 True fake: scaffold gap size wrong estimation (local) 106578054 106579989 115105 117041 NC_000014.9 scf236 99.9 True fake: scaffold gap size wrong estimation (local) 106579904 106583552 117696 121344 NC_000014.9 scf236 99.89 True fake: scaffold gap size wrong estimation (local) 106584255 106591150 122750 130450 NC_000014.9 scf236 99.49 True fake: scaffold gap size wrong estimation (local) 106591425 106591936 132563 133074 NC_000014.9 scf236 99.61 True CONTIG scf236 133787 correct 53324534 53336333 1 12530 NC_000014.9 scf237 98.48 True fake: scaffold gap size wrong estimation (local) 53336245 53343197 13279 21013 NC_000014.9 scf237 99.81 True fake: scaffold gap size wrong estimation (local) 53343329 53347915 21875 26471 NC_000014.9 scf237 99.24 True fake: scaffold gap size wrong estimation (local) 53348242 53360624 27545 41320 NC_000014.9 scf237 98.29 True fake: scaffold gap size wrong estimation (local) 53361337 53362761 42845 44274 NC_000014.9 scf237 99.58 True fake: scaffold gap size wrong estimation (local) 53362706 53372878 45258 55477 NC_000014.9 scf237 99.18 True fake: scaffold gap size wrong estimation (local) 53372817 53385692 56162 69027 NC_000014.9 scf237 99.79 True fake: scaffold gap size wrong estimation (local) 53385593 53393557 69737 77701 NC_000014.9 scf237 99.91 True fake: scaffold gap size wrong estimation (local) 53393465 53402202 78521 87141 NC_000014.9 scf237 98.6 True fake: scaffold gap size wrong estimation (local) 53402808 53407548 88502 93242 NC_000014.9 scf237 99.79 True fake: scaffold gap size wrong estimation (local) 53407450 53412936 93949 99436 NC_000014.9 scf237 99.85 True fake: scaffold gap size wrong estimation (local) 53412847 53417626 100128 104907 NC_000014.9 scf237 100.0 True fake: scaffold gap size wrong estimation (local) 53417529 53424877 105565 112924 NC_000014.9 scf237 99.8 True fake: scaffold gap size wrong estimation (local) 53425626 53426286 115161 115854 NC_000014.9 scf237 95.24 True CONTIG scf237 115854 correct 30407808 30408866 3495 4585 NC_000014.9 scf238 97.07 True fake: scaffold gap size wrong estimation (local) 30409329 30411079 6145 7894 NC_000014.9 scf238 99.94 True fake: scaffold gap size wrong estimation (local) 30410980 30411860 8982 9862 NC_000014.9 scf238 100.0 True local misassembly 30412292 30413644 9899 11251 NC_000014.9 scf238 100.0 True fake: scaffold gap size wrong estimation (local) 30413831 30416479 12655 15303 NC_000014.9 scf238 100.0 True fake: scaffold gap size wrong estimation (local) 30416707 30429260 16277 28851 NC_000014.9 scf238 99.65 True fake: scaffold gap size wrong estimation (local) 30429602 30434461 29939 34802 NC_000014.9 scf238 99.71 True CONTIG scf238 34802 correct 52305863 52311990 1 6128 NC_000014.9 scf239 99.89 True fake: scaffold gap size wrong estimation (local) 52311939 52324995 6857 19912 NC_000014.9 scf239 99.8 True fake: scaffold gap size wrong estimation (local) 52324941 52331298 20585 26942 NC_000014.9 scf239 99.75 True fake: scaffold gap size wrong estimation (local) 52331504 52340224 27947 37466 NC_000014.9 scf239 99.18 True fake: scaffold gap size wrong estimation (local) 52340465 52363671 38606 64136 NC_000014.9 scf239 99.75 True fake: scaffold gap size wrong estimation (local) 52363646 52372727 64845 73925 NC_000014.9 scf239 99.86 True fake: scaffold gap size wrong estimation (local) 52373009 52374077 75844 76912 NC_000014.9 scf239 100.0 True local misassembly 52374999 52377170 76913 79084 NC_000014.9 scf239 99.95 True fake: scaffold gap size wrong estimation (local) 52377083 52377901 79659 80477 NC_000014.9 scf239 99.88 True fake: scaffold gap size wrong estimation (local) 52377811 52382693 81366 86248 NC_000014.9 scf239 99.98 True fake: scaffold gap size wrong estimation (local) 52382595 52383960 86978 88343 NC_000014.9 scf239 100.0 True CONTIG scf239 88848 correct 20538685 20547971 1 10923 NC_000014.9 scf240 99.19 True fake: scaffold gap size wrong estimation (local) 20547916 20563032 11637 27546 NC_000014.9 scf240 99.71 True fake: scaffold gap size wrong estimation (local) 20562934 20571064 28256 36404 NC_000014.9 scf240 99.67 True fake: scaffold gap size wrong estimation (local) 20570969 20572424 37082 38537 NC_000014.9 scf240 99.79 True fake: scaffold gap size wrong estimation (local) 20572326 20575946 39249 42868 NC_000014.9 scf240 99.89 True fake: scaffold gap size wrong estimation (local) 20576230 20589282 44017 57637 NC_000014.9 scf240 98.55 True fake: scaffold gap size wrong estimation (local) 20589740 20593402 58841 62502 NC_000014.9 scf240 99.86 True fake: scaffold gap size wrong estimation (local) 20593304 20603234 63197 75154 NC_000014.9 scf240 98.95 True fake: scaffold gap size wrong estimation (local) 20603151 20605311 75950 78092 NC_000014.9 scf240 99.12 True fake: scaffold gap size wrong estimation (local) 20605493 20613466 79142 87817 NC_000014.9 scf240 97.9 True fake: scaffold gap size wrong estimation (local) 20613368 20618680 88543 93890 NC_000014.9 scf240 99.18 True fake: scaffold gap size wrong estimation (local) 20618988 20619594 95070 95676 NC_000014.9 scf240 99.84 True fake: scaffold gap size wrong estimation (local) 20620177 20626994 96145 103823 NC_000014.9 scf240 99.88 True fake: scaffold gap size wrong estimation (local) 20626908 20634190 104543 111825 NC_000014.9 scf240 99.92 True fake: scaffold gap size wrong estimation (local) 20634095 20636583 112559 115047 NC_000014.9 scf240 99.96 True fake: scaffold gap size wrong estimation (local) 20636490 20640407 115754 119671 NC_000014.9 scf240 99.95 True fake: scaffold gap size wrong estimation (local) 20640644 20645738 120667 125761 NC_000014.9 scf240 99.86 True fake: scaffold gap size wrong estimation (local) 20645659 20654254 126504 136907 NC_000014.9 scf240 98.38 True fake: scaffold gap size wrong estimation (local) 20654871 20667094 138383 150490 NC_000014.9 scf240 99.0 True fake: scaffold gap size wrong estimation (local) 20667021 20669433 151201 153613 NC_000014.9 scf240 99.88 True fake: scaffold gap size wrong estimation (local) 20669340 20689829 154708 177664 NC_000014.9 scf240 97.2 True fake: scaffold gap size wrong estimation (local) 20690222 20692967 178801 181546 NC_000014.9 scf240 99.89 True fake: scaffold gap size wrong estimation (local) 20693055 20699995 182474 190196 NC_000014.9 scf240 99.26 True fake: scaffold gap size wrong estimation (local) 20699905 20701905 190881 192881 NC_000014.9 scf240 99.85 True fake: scaffold gap size wrong estimation (local) 20701810 20718151 194308 212252 NC_000014.9 scf240 99.09 True fake: scaffold gap size wrong estimation (local) 20718324 20720474 213376 215526 NC_000014.9 scf240 99.86 True fake: scaffold gap size wrong estimation (local) 20720375 20721103 216883 217611 NC_000014.9 scf240 99.86 True indel: indel (> 5bp) 20721271 20722354 217708 218791 NC_000014.9 scf240 99.82 True fake: scaffold gap size wrong estimation (local) 20722276 20731926 219635 230001 NC_000014.9 scf240 98.77 True fake: scaffold gap size wrong estimation (local) 20732042 20733510 231036 232504 NC_000014.9 scf240 99.86 True local misassembly 20733679 20734277 232566 233164 NC_000014.9 scf240 99.67 True fake: scaffold gap size wrong estimation (local) 20734181 20745334 234051 246638 NC_000014.9 scf240 96.75 True fake: scaffold gap size wrong estimation (local) 20745458 20746136 247650 248328 NC_000014.9 scf240 98.97 True indel: indel (> 5bp) 20746214 20747053 248329 249168 NC_000014.9 scf240 99.76 True fake: scaffold gap size wrong estimation (local) 20747104 20748949 250215 252060 NC_000014.9 scf240 99.62 True local misassembly 20749308 20750519 252069 253280 NC_000014.9 scf240 99.75 True fake: scaffold gap size wrong estimation (local) 20750441 20759817 254378 264498 NC_000014.9 scf240 99.4 True fake: scaffold gap size wrong estimation (local) 20760284 20761004 265836 266556 NC_000014.9 scf240 100.0 True local misassembly 20761122 20761914 266557 267349 NC_000014.9 scf240 100.0 True local misassembly 20762278 20763786 267350 268858 NC_000014.9 scf240 99.8 True fake: scaffold gap size wrong estimation (local) 20763709 20765748 269806 271845 NC_000014.9 scf240 99.95 True fake: scaffold gap size wrong estimation (local) 20765656 20768651 272592 275587 NC_000014.9 scf240 99.8 True fake: scaffold gap size wrong estimation (local) 20768564 20774913 276784 283148 NC_000014.9 scf240 99.45 True fake: scaffold gap size wrong estimation (local) 20774815 20777013 283906 286104 NC_000014.9 scf240 99.82 True fake: scaffold gap size wrong estimation (local) 20776932 20778804 286953 288825 NC_000014.9 scf240 99.57 True fake: scaffold gap size wrong estimation (local) 20779362 20780753 290300 291691 NC_000014.9 scf240 99.43 True local misassembly 20780998 20782818 291692 293512 NC_000014.9 scf240 99.95 True fake: scaffold gap size wrong estimation (local) 20783729 20785270 295166 296707 NC_000014.9 scf240 99.87 True fake: scaffold gap size wrong estimation (local) 20785211 20785974 298048 298815 NC_000014.9 scf240 99.48 True local misassembly 20786633 20787675 298890 299931 NC_000014.9 scf240 99.81 True fake: scaffold gap size wrong estimation (local) 20787873 20795687 301699 309508 NC_000014.9 scf240 99.65 True fake: scaffold gap size wrong estimation (local) 20796030 20796783 310953 311706 NC_000014.9 scf240 99.73 True local misassembly 20797199 20798073 311879 312753 NC_000014.9 scf240 99.77 True fake: scaffold gap size wrong estimation (local) 20797979 20800803 313567 316390 NC_000014.9 scf240 99.86 True fake: scaffold gap size wrong estimation (local) 20800709 20806708 317116 323116 NC_000014.9 scf240 99.87 True fake: scaffold gap size wrong estimation (local) 20806616 20811443 323782 328609 NC_000014.9 scf240 99.88 True fake: scaffold gap size wrong estimation (local) 20811614 20815944 329572 333995 NC_000014.9 scf240 97.65 True fake: scaffold gap size wrong estimation (local) 20815774 20816360 334527 335113 NC_000014.9 scf240 99.49 True fake: scaffold gap size wrong estimation (local) 20816948 20817537 335783 336372 NC_000014.9 scf240 99.83 True fake: scaffold gap size wrong estimation (local) 20817538 20819727 336863 339052 NC_000014.9 scf240 99.95 True fake: scaffold gap size wrong estimation (local) 20819893 20825243 340249 346525 NC_000014.9 scf240 99.21 True fake: scaffold gap size wrong estimation (local) 20825594 20828664 347634 350694 NC_000014.9 scf240 99.51 True fake: scaffold gap size wrong estimation (local) 20828842 20838346 351678 361193 NC_000014.9 scf240 99.67 True fake: scaffold gap size wrong estimation (local) 20838735 20840013 362414 363692 NC_000014.9 scf240 99.92 True fake: scaffold gap size wrong estimation (local) 20840646 20843567 365403 368680 NC_000014.9 scf240 96.71 True fake: scaffold gap size wrong estimation (local) 20843496 20847013 369618 373134 NC_000014.9 scf240 99.86 True fake: scaffold gap size wrong estimation (local) 20847202 20861756 374089 389388 NC_000014.9 scf240 99.41 True CONTIG scf240 389388 correct 39483485 39496300 1 12628 NC_000014.9 scf241 98.47 True fake: scaffold gap size wrong estimation (local) 39496242 39511069 13527 29296 NC_000014.9 scf241 99.34 True fake: scaffold gap size wrong estimation (local) 39512453 39517311 31483 37213 NC_000014.9 scf241 97.1 True fake: scaffold gap size wrong estimation (local) 39518422 39521704 39026 42308 NC_000014.9 scf241 99.82 True CONTIG scf241 42308 correct 36355224 36357449 1 2226 NC_000014.9 scf242 99.78 True fake: scaffold gap size wrong estimation (local) 36357938 36369734 3475 15276 NC_000014.9 scf242 99.83 True fake: scaffold gap size wrong estimation (local) 36369640 36370968 15980 17308 NC_000014.9 scf242 99.92 True fake: scaffold gap size wrong estimation (local) 36370969 36372210 18559 19800 NC_000014.9 scf242 99.84 True local misassembly 36372654 36373458 19801 20605 NC_000014.9 scf242 99.75 True fake: scaffold gap size wrong estimation (local) 36373366 36377537 21859 26030 NC_000014.9 scf242 99.9 True fake: scaffold gap size wrong estimation (local) 36377440 36380109 26739 29408 NC_000014.9 scf242 99.96 True fake: scaffold gap size wrong estimation (local) 36380026 36395447 30145 47194 NC_000014.9 scf242 98.86 True fake: scaffold gap size wrong estimation (local) 36395564 36400916 48073 53425 NC_000014.9 scf242 99.93 True fake: scaffold gap size wrong estimation (local) 36400818 36403263 54148 56593 NC_000014.9 scf242 99.96 True fake: scaffold gap size wrong estimation (local) 36403176 36406867 57875 61595 NC_000014.9 scf242 99.09 True fake: scaffold gap size wrong estimation (local) 36406770 36410264 62289 65789 NC_000014.9 scf242 99.32 True fake: scaffold gap size wrong estimation (local) 36412343 36413160 68722 69572 NC_000014.9 scf242 95.65 True CONTIG scf242 69572 correct 44476478 44486840 1 11106 NC_000014.9 scf243 99.62 True fake: scaffold gap size wrong estimation (local) 44486759 44498559 11734 23510 NC_000014.9 scf243 99.64 True fake: scaffold gap size wrong estimation (local) 44498763 44503431 24478 29939 NC_000014.9 scf243 98.43 True fake: scaffold gap size wrong estimation (local) 44503333 44508958 30873 37341 NC_000014.9 scf243 99.95 True fake: scaffold gap size wrong estimation (local) 44508864 44511103 38037 40276 NC_000014.9 scf243 99.96 True fake: scaffold gap size wrong estimation (local) 44512075 44513233 42018 43176 NC_000014.9 scf243 100.0 True CONTIG scf243 46008 correct 74608762 74612996 4235 1 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74603180 74607995 10502 5706 NC_000014.9 scf244 99.46 True fake: scaffold gap size wrong estimation (local) 74599073 74603270 15434 11237 NC_000014.9 scf244 99.98 True fake: scaffold gap size wrong estimation (local) 74590478 74599160 25660 16167 NC_000014.9 scf244 99.83 True fake: scaffold gap size wrong estimation (local) 74582336 74590559 35378 26352 NC_000014.9 scf244 99.99 True fake: scaffold gap size wrong estimation (local) 74571134 74582433 48670 36081 NC_000014.9 scf244 96.51 True fake: scaffold gap size wrong estimation (local) 74566534 74571185 54058 49391 NC_000014.9 scf244 99.57 True fake: scaffold gap size wrong estimation (local) 74564455 74566632 56861 54684 NC_000014.9 scf244 99.72 True fake: scaffold gap size wrong estimation (local) 74558066 74564033 64849 58151 NC_000014.9 scf244 97.47 True fake: scaffold gap size wrong estimation (local) 74554698 74558162 69006 65561 NC_000014.9 scf244 99.37 True fake: scaffold gap size wrong estimation (local) 74553924 74554793 70284 69415 NC_000014.9 scf244 99.89 True fake: scaffold gap size wrong estimation (local) 74543438 74553994 81761 71209 NC_000014.9 scf244 99.73 True fake: scaffold gap size wrong estimation (local) 74542162 74542864 83923 83221 NC_000014.9 scf244 100.0 True local misassembly 74540947 74542001 84978 83924 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74536673 74540603 90287 86305 NC_000014.9 scf244 98.52 True fake: scaffold gap size wrong estimation (local) 74533068 74536770 94790 91088 NC_000014.9 scf244 99.95 True fake: scaffold gap size wrong estimation (local) 74530808 74533167 97890 95531 NC_000014.9 scf244 99.87 True fake: scaffold gap size wrong estimation (local) 74526098 74530651 103441 98888 NC_000014.9 scf244 99.91 True fake: scaffold gap size wrong estimation (local) 74516367 74526183 114785 104157 NC_000014.9 scf244 96.13 True fake: scaffold gap size wrong estimation (local) 74513644 74516154 118603 115831 NC_000014.9 scf244 96.0 True fake: scaffold gap size wrong estimation (local) 74506881 74513705 126451 119627 NC_000014.9 scf244 99.85 True fake: scaffold gap size wrong estimation (local) 74488648 74506972 147028 127125 NC_000014.9 scf244 99.57 True fake: scaffold gap size wrong estimation (local) 74485310 74488550 151304 147981 NC_000014.9 scf244 97.47 True fake: scaffold gap size wrong estimation (local) 74474298 74485161 163929 152253 NC_000014.9 scf244 99.9 True fake: scaffold gap size wrong estimation (local) 74462304 74474391 177557 164717 NC_000014.9 scf244 99.92 True fake: scaffold gap size wrong estimation (local) 74461151 74461957 180570 179764 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74458492 74460923 184164 181733 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74453357 74458556 191859 184974 NC_000014.9 scf244 98.28 True fake: scaffold gap size wrong estimation (local) 74451737 74453193 194405 192952 NC_000014.9 scf244 99.73 True fake: scaffold gap size wrong estimation (local) 74446741 74451807 201131 195246 NC_000014.9 scf244 99.2 True fake: scaffold gap size wrong estimation (local) 74440540 74446812 208847 201808 NC_000014.9 scf244 98.83 True fake: scaffold gap size wrong estimation (local) 74439115 74440372 210507 209238 NC_000014.9 scf244 98.9 True fake: scaffold gap size wrong estimation (local) 74435090 74439000 215656 211746 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74426235 74434901 226046 216583 NC_000014.9 scf244 99.69 True fake: scaffold gap size wrong estimation (local) 74422860 74426050 230126 226992 NC_000014.9 scf244 98.15 True fake: scaffold gap size wrong estimation (local) 74408568 74422745 246303 231363 NC_000014.9 scf244 99.97 True fake: scaffold gap size wrong estimation (local) 74406505 74408382 249149 247272 NC_000014.9 scf244 99.95 True fake: scaffold gap size wrong estimation (local) 74404166 74405836 252313 250643 NC_000014.9 scf244 99.94 True fake: scaffold gap size wrong estimation (local) 74393635 74403638 264021 253968 NC_000014.9 scf244 99.42 True fake: scaffold gap size wrong estimation (local) 74390969 74393732 267374 264668 NC_000014.9 scf244 97.87 True fake: scaffold gap size wrong estimation (local) 74388826 74390755 270420 268491 NC_000014.9 scf244 99.69 True fake: scaffold gap size wrong estimation (local) 74385986 74388724 274074 271336 NC_000014.9 scf244 100.0 True fake: scaffold gap size wrong estimation (local) 74383704 74384387 277148 276465 NC_000014.9 scf244 100.0 True CONTIG scf244 277148 correct 52508960 52520590 1 11629 NC_000014.9 scf245 99.96 True fake: scaffold gap size wrong estimation (local) 52520547 52525715 12396 17421 NC_000014.9 scf245 97.16 True fake: scaffold gap size wrong estimation (local) 52525661 52528945 18156 21434 NC_000014.9 scf245 99.76 True CONTIG scf245 21434 correct 47108590 47116214 1 7621 NC_000014.9 scf246 99.83 True fake: scaffold gap size wrong estimation (local) 47116543 47117167 8949 9573 NC_000014.9 scf246 100.0 True local misassembly 47117454 47119068 9574 11188 NC_000014.9 scf246 100.0 True fake: scaffold gap size wrong estimation (local) 47119191 47128885 12120 21814 NC_000014.9 scf246 99.97 True fake: scaffold gap size wrong estimation (local) 47130274 47131001 23954 24681 NC_000014.9 scf246 100.0 True fake: scaffold gap size wrong estimation (local) 47130918 47142549 25387 37018 NC_000014.9 scf246 99.99 True fake: scaffold gap size wrong estimation (local) 47142456 47149255 37700 44498 NC_000014.9 scf246 99.96 True fake: scaffold gap size wrong estimation (local) 47149162 47155738 45245 52650 NC_000014.9 scf246 99.67 True fake: scaffold gap size wrong estimation (local) 47155920 47158796 53659 56409 NC_000014.9 scf246 95.48 True fake: scaffold gap size wrong estimation (local) 47158703 47164439 57216 63705 NC_000014.9 scf246 99.27 True fake: scaffold gap size wrong estimation (local) 47165052 47166056 65240 66244 NC_000014.9 scf246 99.8 True local misassembly 47166318 47168284 66245 68211 NC_000014.9 scf246 99.95 True fake: scaffold gap size wrong estimation (local) 47168285 47172055 68914 72684 NC_000014.9 scf246 99.95 True CONTIG scf246 72873 correct 57343692 57345737 19 2106 NC_000014.9 scf247 97.84 True fake: scaffold gap size wrong estimation (local) 57345642 57351577 2850 8786 NC_000014.9 scf247 99.95 True fake: scaffold gap size wrong estimation (local) 57351486 57354723 9460 12697 NC_000014.9 scf247 99.97 True fake: scaffold gap size wrong estimation (local) 57354633 57365469 13342 24178 NC_000014.9 scf247 99.93 True fake: scaffold gap size wrong estimation (local) 57365962 57369434 25416 28888 NC_000014.9 scf247 99.8 True fake: scaffold gap size wrong estimation (local) 57370385 57372865 30567 33047 NC_000014.9 scf247 99.72 True fake: scaffold gap size wrong estimation (local) 57372803 57378305 33736 39239 NC_000014.9 scf247 99.82 True fake: scaffold gap size wrong estimation (local) 57378211 57379658 40679 42159 NC_000014.9 scf247 97.7 True fake: scaffold gap size wrong estimation (local) 57379934 57381050 42290 43437 NC_000014.9 scf247 97.21 True fake: scaffold gap size wrong estimation (local) 57380954 57387658 44204 50898 NC_000014.9 scf247 99.33 True fake: scaffold gap size wrong estimation (local) 57387579 57399175 51508 63201 NC_000014.9 scf247 99.07 True fake: scaffold gap size wrong estimation (local) 57399085 57413576 64075 79296 NC_000014.9 scf247 99.62 True fake: scaffold gap size wrong estimation (local) 57413729 57418974 80255 85483 NC_000014.9 scf247 99.68 True fake: scaffold gap size wrong estimation (local) 57418882 57430479 86122 97717 NC_000014.9 scf247 99.98 True fake: scaffold gap size wrong estimation (local) 57430383 57439035 98364 107016 NC_000014.9 scf247 100.0 True fake: scaffold gap size wrong estimation (local) 57438944 57443054 107716 111826 NC_000014.9 scf247 100.0 True fake: scaffold gap size wrong estimation (local) 57443465 57447649 112903 117087 NC_000014.9 scf247 100.0 True fake: scaffold gap size wrong estimation (local) 57447589 57454556 118330 125322 NC_000014.9 scf247 99.63 True fake: scaffold gap size wrong estimation (local) 57454745 57460729 126295 133095 NC_000014.9 scf247 99.42 True fake: scaffold gap size wrong estimation (local) 57460909 57463411 134087 136589 NC_000014.9 scf247 99.84 True fake: scaffold gap size wrong estimation (local) 57463541 57470623 137526 144606 NC_000014.9 scf247 99.89 True fake: scaffold gap size wrong estimation (local) 57470539 57475121 145275 149855 NC_000014.9 scf247 99.87 True CONTIG scf247 149855 correct 70426645 70430385 3775 1 NC_000014.9 scf248 98.89 True fake: scaffold gap size wrong estimation (local) 70425248 70426740 6017 4512 NC_000014.9 scf248 99.0 True fake: scaffold gap size wrong estimation (local) 70418464 70423470 13289 8283 NC_000014.9 scf248 99.86 True fake: scaffold gap size wrong estimation (local) 70415542 70418382 16977 14136 NC_000014.9 scf248 99.72 True fake: scaffold gap size wrong estimation (local) 70413322 70415186 19949 18085 NC_000014.9 scf248 99.68 True local misassembly 70412542 70413083 20491 19950 NC_000014.9 scf248 100.0 True fake: scaffold gap size wrong estimation (local) 70407447 70412638 26685 21496 NC_000014.9 scf248 99.61 True relocation, inconsistency = 10908417 59492800 59499029 26686 32923 NC_000014.9 scf248 99.7 True fake: scaffold gap size wrong estimation (local) 59499155 59508437 33805 43900 NC_000014.9 scf248 99.55 True fake: scaffold gap size wrong estimation (local) 59508566 59510982 44916 47332 NC_000014.9 scf248 99.79 True fake: scaffold gap size wrong estimation (local) 59511549 59514074 48739 51335 NC_000014.9 scf248 96.85 True CONTIG scf248 51335 misassembled 20042345 20045143 11 2808 NC_000014.9 scf249 99.64 True fake: scaffold gap size wrong estimation (local) 20045051 20048351 3568 6867 NC_000014.9 scf249 99.45 True fake: scaffold gap size wrong estimation (local) 20048264 20051715 7644 11130 NC_000014.9 scf249 98.74 True fake: scaffold gap size wrong estimation (local) 20051622 20056202 11737 16367 NC_000014.9 scf249 98.77 True fake: scaffold gap size wrong estimation (local) 20056104 20078462 16946 41430 NC_000014.9 scf249 98.55 True fake: scaffold gap size wrong estimation (local) 20079510 20082179 43175 45844 NC_000014.9 scf249 99.96 True fake: scaffold gap size wrong estimation (local) 20083055 20084690 47469 49104 NC_000014.9 scf249 99.94 True local misassembly 20089345 20089918 49105 49678 NC_000014.9 scf249 99.83 True fake: scaffold gap size wrong estimation (local) 20089821 20100391 50317 61744 NC_000014.9 scf249 99.23 True fake: scaffold gap size wrong estimation (local) 20100294 20104185 62368 66273 NC_000014.9 scf249 99.54 True CONTIG scf249 66273 correct 72414099 72415513 1 1426 NC_000014.9 scf250 99.09 True fake: scaffold gap size wrong estimation (local) 72415336 72422278 2019 8959 NC_000014.9 scf250 99.87 True fake: scaffold gap size wrong estimation (local) 72422179 72425400 9627 12848 NC_000014.9 scf250 99.94 True fake: scaffold gap size wrong estimation (local) 72425301 72437174 13541 25692 NC_000014.9 scf250 99.15 True fake: scaffold gap size wrong estimation (local) 72437342 72440431 26718 29807 NC_000014.9 scf250 99.9 True fake: scaffold gap size wrong estimation (local) 72440609 72444882 30759 35028 NC_000014.9 scf250 99.88 True fake: scaffold gap size wrong estimation (local) 72444799 72453429 35806 44432 NC_000014.9 scf250 99.72 True fake: scaffold gap size wrong estimation (local) 72453619 72465474 45355 57973 NC_000014.9 scf250 99.59 True fake: scaffold gap size wrong estimation (local) 72465506 72468389 58750 61637 NC_000014.9 scf250 99.86 True fake: scaffold gap size wrong estimation (local) 72468326 72470729 62417 64818 NC_000014.9 scf250 99.88 True fake: scaffold gap size wrong estimation (local) 72470873 72475287 65846 71052 NC_000014.9 scf250 97.13 True fake: scaffold gap size wrong estimation (local) 72475621 72481825 72239 78444 NC_000014.9 scf250 99.9 True fake: scaffold gap size wrong estimation (local) 72482007 72483829 79419 81241 NC_000014.9 scf250 99.89 True local misassembly 72484097 72484953 81242 82098 NC_000014.9 scf250 100.0 True CONTIG scf250 82105 correct 106717889 106718815 1 927 NC_000014.9 scf251 98.71 True relocation, scaffold gap is present, inconsistency = 46605 106766708 106767764 2215 3289 NC_000014.9 scf251 97.95 True fake: scaffold gap size wrong estimation (local) 106768280 106769751 3498 4969 NC_000014.9 scf251 99.66 True fake: scaffold gap size wrong estimation (local) 106769667 106772522 5809 8664 NC_000014.9 scf251 99.96 True fake: scaffold gap size wrong estimation (local) 106773390 106773997 10503 11110 NC_000014.9 scf251 99.51 True fake: scaffold gap size wrong estimation (local) 106775715 106776540 13754 14579 NC_000014.9 scf251 99.88 True local misassembly 106776690 106777465 14580 15355 NC_000014.9 scf251 95.36 True fake: scaffold gap size wrong estimation (local) 106777412 106779212 17352 19152 NC_000014.9 scf251 99.39 True fake: scaffold gap size wrong estimation (local) 106780700 106788877 21673 29852 NC_000014.9 scf251 99.72 True fake: scaffold gap size wrong estimation (local) 106788790 106795162 30573 37975 NC_000014.9 scf251 98.96 True fake: scaffold gap size wrong estimation (local) 106795466 106797038 39119 40710 NC_000014.9 scf251 98.81 True fake: scaffold gap size wrong estimation (local) 106798152 106803015 42514 47391 NC_000014.9 scf251 99.67 True fake: scaffold gap size wrong estimation (local) 106802925 106815069 48052 60925 NC_000014.9 scf251 99.82 True fake: scaffold gap size wrong estimation (local) 106814971 106818962 61581 65571 NC_000014.9 scf251 99.9 True fake: scaffold gap size wrong estimation (local) 106819698 106826680 67035 74899 NC_000014.9 scf251 99.52 True fake: scaffold gap size wrong estimation (local) 106826860 106830833 75790 79761 NC_000014.9 scf251 99.87 True fake: scaffold gap size wrong estimation (local) 106831300 106835940 81001 85633 NC_000014.9 scf251 99.66 True fake: scaffold gap size wrong estimation (local) 106835844 106847060 86259 97475 NC_000014.9 scf251 99.95 True fake: scaffold gap size wrong estimation (local) 106846966 106848338 98292 99664 NC_000014.9 scf251 100.0 True local misassembly 106848609 106850381 99665 101437 NC_000014.9 scf251 99.94 True fake: scaffold gap size wrong estimation (local) 106850284 106852370 102306 104390 NC_000014.9 scf251 99.9 True fake: scaffold gap size wrong estimation (local) 106852287 106856286 105144 109164 NC_000014.9 scf251 99.48 True fake: scaffold gap size wrong estimation (local) 106857225 106863436 112168 118380 NC_000014.9 scf251 99.97 True fake: scaffold gap size wrong estimation (local) 106864505 106866774 120177 122423 NC_000014.9 scf251 98.94 True fake: scaffold gap size wrong estimation (local) 106866902 106867708 123846 124652 NC_000014.9 scf251 100.0 True local misassembly 106868215 106869638 124653 126076 NC_000014.9 scf251 100.0 True fake: scaffold gap size wrong estimation (local) 106869639 106871513 127355 129229 NC_000014.9 scf251 96.91 True fake: scaffold gap size wrong estimation (local) 106872661 106875050 131229 133618 NC_000014.9 scf251 99.79 True fake: scaffold gap size wrong estimation (local) 106875210 106880784 134598 140169 NC_000014.9 scf251 99.78 True fake: scaffold gap size wrong estimation (local) 106880685 106881347 141002 141664 NC_000014.9 scf251 99.85 True CONTIG scf251 141664 misassembled 102675053 102676049 997 1 NC_000014.9 scf252 100.0 True fake: scaffold gap size wrong estimation (local) 102673691 102674856 3468 2303 NC_000014.9 scf252 99.91 True fake: scaffold gap size wrong estimation (local) 102670961 102672389 6968 5540 NC_000014.9 scf252 100.0 True local misassembly 102669311 102670634 8292 6969 NC_000014.9 scf252 100.0 True fake: scaffold gap size wrong estimation (local) 102665313 102669206 13165 9272 NC_000014.9 scf252 99.97 True fake: scaffold gap size wrong estimation (local) 102657847 102665159 21421 14109 NC_000014.9 scf252 100.0 True fake: scaffold gap size wrong estimation (local) 102655724 102657655 24371 22442 NC_000014.9 scf252 99.9 True fake: scaffold gap size wrong estimation (local) 102654107 102655812 26929 25226 NC_000014.9 scf252 99.82 True fake: scaffold gap size wrong estimation (local) 102653034 102653982 29560 28612 NC_000014.9 scf252 100.0 True local misassembly 102651470 102652241 30332 29561 NC_000014.9 scf252 99.61 True fake: scaffold gap size wrong estimation (local) 102643065 102651469 40426 32022 NC_000014.9 scf252 99.94 True relocation, inconsistency = 2258237 104909707 104913190 40427 43910 NC_000014.9 scf252 99.94 True fake: scaffold gap size wrong estimation (local) 104913103 104922048 44543 55152 NC_000014.9 scf252 96.8 True fake: scaffold gap size wrong estimation (local) 104922629 104933637 56787 67795 NC_000014.9 scf252 99.94 True fake: scaffold gap size wrong estimation (local) 104933850 104943177 69398 78789 NC_000014.9 scf252 99.12 True fake: scaffold gap size wrong estimation (local) 104943910 104946204 80277 82579 NC_000014.9 scf252 97.66 True fake: scaffold gap size wrong estimation (local) 104946605 104947128 83475 83998 NC_000014.9 scf252 99.62 True fake: scaffold gap size wrong estimation (local) 104947840 104948685 84693 85538 NC_000014.9 scf252 99.29 True fake: scaffold gap size wrong estimation (local) 104953034 104971596 90907 111810 NC_000014.9 scf252 99.24 True fake: scaffold gap size wrong estimation (local) 104971499 104978317 112557 119375 NC_000014.9 scf252 99.97 True fake: scaffold gap size wrong estimation (local) 104980050 104985311 121796 127057 NC_000014.9 scf252 100.0 True fake: scaffold gap size wrong estimation (local) 104985544 104987638 128127 130221 NC_000014.9 scf252 99.9 True fake: scaffold gap size wrong estimation (local) 104988489 104991152 131794 134457 NC_000014.9 scf252 99.96 True fake: scaffold gap size wrong estimation (local) 104991058 105000460 135144 144546 NC_000014.9 scf252 99.84 True fake: scaffold gap size wrong estimation (local) 105000996 105005125 146801 151977 NC_000014.9 scf252 97.29 True fake: scaffold gap size wrong estimation (local) 105005045 105019014 152997 167652 NC_000014.9 scf252 96.63 True fake: scaffold gap size wrong estimation (local) 105018922 105025411 168541 175869 NC_000014.9 scf252 99.42 True fake: scaffold gap size wrong estimation (local) 105025341 105035683 176590 188492 NC_000014.9 scf252 98.91 True fake: scaffold gap size wrong estimation (local) 105035596 105036696 189053 190153 NC_000014.9 scf252 100.0 True fake: scaffold gap size wrong estimation (local) 105037347 105040796 191312 195686 NC_000014.9 scf252 95.73 True fake: scaffold gap size wrong estimation (local) 105041214 105044295 197321 200402 NC_000014.9 scf252 99.77 True fake: scaffold gap size wrong estimation (local) 105044411 105052835 201450 210396 NC_000014.9 scf252 96.62 True fake: scaffold gap size wrong estimation (local) 105053376 105054517 211853 212994 NC_000014.9 scf252 99.91 True CONTIG scf252 212994 misassembled 42154208 42154945 1 738 NC_000014.9 scf253 99.73 True fake: scaffold gap size wrong estimation (local) 42155182 42158245 1876 4953 NC_000014.9 scf253 99.19 True fake: scaffold gap size wrong estimation (local) 42158152 42159389 5711 6948 NC_000014.9 scf253 99.76 True local misassembly 42159811 42161709 7093 8991 NC_000014.9 scf253 99.89 True fake: scaffold gap size wrong estimation (local) 42161613 42170662 9684 19839 NC_000014.9 scf253 97.25 True fake: scaffold gap size wrong estimation (local) 42170599 42181793 20842 32036 NC_000014.9 scf253 99.96 True fake: scaffold gap size wrong estimation (local) 42182019 42183415 33110 34506 NC_000014.9 scf253 100.0 True fake: scaffold gap size wrong estimation (local) 42183342 42202569 35372 56172 NC_000014.9 scf253 99.38 True fake: scaffold gap size wrong estimation (local) 42202483 42205191 56875 59485 NC_000014.9 scf253 96.38 True CONTIG scf253 59485 correct 39345229 39353783 8571 1 NC_000014.9 scf254 99.67 True fake: scaffold gap size wrong estimation (local) 39342481 39345325 12042 9198 NC_000014.9 scf254 99.93 True fake: scaffold gap size wrong estimation (local) 39341101 39342270 14248 13079 NC_000014.9 scf254 100.0 True fake: scaffold gap size wrong estimation (local) 39337936 39341157 18150 14929 NC_000014.9 scf254 99.97 True fake: scaffold gap size wrong estimation (local) 39334742 39338028 22082 18796 NC_000014.9 scf254 99.97 True fake: scaffold gap size wrong estimation (local) 39332752 39334572 24923 23103 NC_000014.9 scf254 99.78 True local misassembly 39331780 39332548 25692 24924 NC_000014.9 scf254 99.74 True fake: scaffold gap size wrong estimation (local) 39329117 39329653 28991 28455 NC_000014.9 scf254 99.63 True fake: scaffold gap size wrong estimation (local) 39328361 39329080 30591 29857 NC_000014.9 scf254 97.69 True fake: scaffold gap size wrong estimation (local) 39325801 39327941 34307 32168 NC_000014.9 scf254 99.86 True fake: scaffold gap size wrong estimation (local) 39322540 39325332 38373 35581 NC_000014.9 scf254 99.86 True fake: scaffold gap size wrong estimation (local) 39312021 39321302 50368 40361 NC_000014.9 scf254 99.45 True fake: scaffold gap size wrong estimation (local) 39299458 39311859 64530 51255 NC_000014.9 scf254 99.17 True fake: scaffold gap size wrong estimation (local) 39298531 39299088 67107 66550 NC_000014.9 scf254 99.82 True fake: scaffold gap size wrong estimation (local) 39295793 39296608 70664 69849 NC_000014.9 scf254 99.88 True local misassembly 39294406 39295111 71370 70665 NC_000014.9 scf254 99.86 True fake: scaffold gap size wrong estimation (local) 39286957 39294495 81213 73075 NC_000014.9 scf254 97.08 True fake: scaffold gap size wrong estimation (local) 39286120 39286896 82131 81343 NC_000014.9 scf254 98.23 True fake: scaffold gap size wrong estimation (local) 39281627 39284613 87321 84335 NC_000014.9 scf254 99.93 True fake: scaffold gap size wrong estimation (local) 39280948 39281626 88221 87543 NC_000014.9 scf254 100.0 True fake: scaffold gap size wrong estimation (local) 39279130 39280045 91079 90164 NC_000014.9 scf254 99.89 True local misassembly 39277781 39278975 92274 91080 NC_000014.9 scf254 100.0 True fake: scaffold gap size wrong estimation (local) 39275233 39277680 95611 93164 NC_000014.9 scf254 100.0 True fake: scaffold gap size wrong estimation (local) 39273353 39274218 98300 97435 NC_000014.9 scf254 99.88 True indel: indel (<= 5bp) 39272704 39273235 98947 98416 NC_000014.9 scf254 99.62 True fake: scaffold gap size wrong estimation (local) 39263775 39272120 109463 100388 NC_000014.9 scf254 99.88 True fake: scaffold gap size wrong estimation (local) 39263192 39263853 110892 110231 NC_000014.9 scf254 100.0 True CONTIG scf254 110892 correct 18531522 18532104 583 1 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18528324 18531603 4757 1439 NC_000014.9 scf255 98.73 True fake: scaffold gap size wrong estimation (local) 18526515 18527442 7543 6616 NC_000014.9 scf255 100.0 True local misassembly 18525148 18526313 8709 7544 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18520000 18524812 14629 9817 NC_000014.9 scf255 99.98 True fake: scaffold gap size wrong estimation (local) 18517727 18519999 17684 15412 NC_000014.9 scf255 100.0 True indel: indel (> 5bp) 18509546 18517726 25913 17733 NC_000014.9 scf255 99.93 True fake: scaffold gap size wrong estimation (local) 18505875 18508813 30554 27616 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18502002 18504459 35118 32755 NC_000014.9 scf255 95.69 True fake: scaffold gap size wrong estimation (local) 18499040 18500468 39358 37930 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18496457 18497943 42674 41188 NC_000014.9 scf255 99.93 True fake: scaffold gap size wrong estimation (local) 18481637 18495065 60197 44861 NC_000014.9 scf255 97.12 True fake: scaffold gap size wrong estimation (local) 18478227 18478729 65886 65384 NC_000014.9 scf255 99.8 True local misassembly 18476629 18477857 67115 65887 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18470962 18471689 74813 74086 NC_000014.9 scf255 99.86 True fake: scaffold gap size wrong estimation (local) 18469055 18469684 77725 77096 NC_000014.9 scf255 100.0 True indel: stretch of mismatches 18468114 18468766 78666 78014 NC_000014.9 scf255 99.85 True fake: scaffold gap size wrong estimation (local) 18466854 18467644 80892 80102 NC_000014.9 scf255 100.0 True local misassembly 18466117 18466693 81469 80893 NC_000014.9 scf255 99.83 True fake: scaffold gap size wrong estimation (local) 18463995 18464713 84706 83988 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18454796 18461046 97066 89689 NC_000014.9 scf255 96.91 True fake: scaffold gap size wrong estimation (local) 18452006 18453978 100695 98709 NC_000014.9 scf255 99.14 True fake: scaffold gap size wrong estimation (local) 18447507 18448938 107448 106017 NC_000014.9 scf255 99.93 True local misassembly 18446705 18447416 108160 107449 NC_000014.9 scf255 100.0 True indel: indel (> 5bp) 18446083 18446663 108741 108161 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18436782 18445500 118851 110133 NC_000014.9 scf255 99.91 True fake: scaffold gap size wrong estimation (local) 18425643 18436049 132339 120424 NC_000014.9 scf255 95.52 True fake: scaffold gap size wrong estimation (local) 18409663 18425173 150562 133616 NC_000014.9 scf255 97.91 True fake: scaffold gap size wrong estimation (local) 18408014 18409760 153123 151377 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18402358 18408107 159634 153867 NC_000014.9 scf255 99.67 True fake: scaffold gap size wrong estimation (local) 18400964 18402449 161686 160201 NC_000014.9 scf255 99.93 True fake: scaffold gap size wrong estimation (local) 18400169 18400783 162662 162048 NC_000014.9 scf255 99.67 True fake: scaffold gap size wrong estimation (local) 18391568 18399903 172856 163747 NC_000014.9 scf255 98.51 True fake: scaffold gap size wrong estimation (local) 18388100 18391176 177130 174054 NC_000014.9 scf255 99.97 True fake: scaffold gap size wrong estimation (local) 18384303 18388187 183702 179782 NC_000014.9 scf255 98.95 True fake: scaffold gap size wrong estimation (local) 18382832 18384074 186173 184931 NC_000014.9 scf255 99.76 True indel: indel (> 5bp) 18381911 18382706 187127 186332 NC_000014.9 scf255 99.75 True fake: scaffold gap size wrong estimation (local) 18381273 18381910 188550 187913 NC_000014.9 scf255 100.0 True indel: indel (> 5bp) 18380117 18381209 189643 188551 NC_000014.9 scf255 100.0 True fake: scaffold gap size wrong estimation (local) 18376941 18380210 194036 190742 NC_000014.9 scf255 99.18 True fake: scaffold gap size wrong estimation (local) 18375244 18377037 196588 194795 NC_000014.9 scf255 99.89 True local misassembly 18373980 18374562 197527 196945 NC_000014.9 scf255 100.0 True CONTIG scf255 199210 correct 84118029 84129119 9 11096 NC_000014.9 scf256 99.75 True fake: scaffold gap size wrong estimation (local) 84129032 84131140 11744 13852 NC_000014.9 scf256 99.86 True fake: scaffold gap size wrong estimation (local) 84131237 84133899 14822 17453 NC_000014.9 scf256 98.65 True fake: scaffold gap size wrong estimation (local) 84133809 84134892 18205 19288 NC_000014.9 scf256 99.91 True fake: scaffold gap size wrong estimation (local) 84135351 84135918 19789 20356 NC_000014.9 scf256 99.47 True fake: scaffold gap size wrong estimation (local) 84135841 84150588 21057 37353 NC_000014.9 scf256 99.52 True fake: scaffold gap size wrong estimation (local) 84151025 84156737 38569 44284 NC_000014.9 scf256 99.79 True CONTIG scf256 44292 correct 47907062 47923314 1 17030 NC_000014.9 scf257 99.62 True fake: scaffold gap size wrong estimation (local) 47923215 47924775 17540 19100 NC_000014.9 scf257 99.68 True fake: scaffold gap size wrong estimation (local) 47925875 47940371 20980 36241 NC_000014.9 scf257 99.13 True CONTIG scf257 36241 correct 32563283 32580763 18252 1 NC_000014.9 scf258 99.73 True fake: scaffold gap size wrong estimation (local) 32559772 32563379 22560 18953 NC_000014.9 scf258 100.0 True fake: scaffold gap size wrong estimation (local) 32553264 32559810 29824 23278 NC_000014.9 scf258 99.95 True fake: scaffold gap size wrong estimation (local) 32551690 32553326 32251 30615 NC_000014.9 scf258 100.0 True fake: scaffold gap size wrong estimation (local) 32548282 32551398 36490 33358 NC_000014.9 scf258 99.49 True fake: scaffold gap size wrong estimation (local) 32540288 32548369 45284 37205 NC_000014.9 scf258 99.96 True fake: scaffold gap size wrong estimation (local) 32534717 32540169 51570 46118 NC_000014.9 scf258 99.96 True fake: scaffold gap size wrong estimation (local) 32523799 32534798 63177 52208 NC_000014.9 scf258 99.66 True CONTIG scf258 63177 correct 41197286 41209419 12941 1 NC_000014.9 scf259 98.83 True CONTIG scf259 12941 correct 53911444 53915027 16 3599 NC_000014.9 scf260 99.89 True fake: scaffold gap size wrong estimation (local) 53914928 53924495 4251 14646 NC_000014.9 scf260 99.37 True fake: scaffold gap size wrong estimation (local) 53924405 53926141 15411 17155 NC_000014.9 scf260 99.26 True fake: scaffold gap size wrong estimation (local) 53926049 53947519 18022 41549 NC_000014.9 scf260 97.4 True fake: scaffold gap size wrong estimation (local) 53947430 53959766 42254 55346 NC_000014.9 scf260 99.52 True fake: scaffold gap size wrong estimation (local) 53959677 53961247 56061 57631 NC_000014.9 scf260 99.87 True fake: scaffold gap size wrong estimation (local) 53961150 53964784 58425 62059 NC_000014.9 scf260 99.92 True fake: scaffold gap size wrong estimation (local) 53964691 53969982 62703 68779 NC_000014.9 scf260 97.57 True fake: scaffold gap size wrong estimation (local) 53970132 53976879 69729 77295 NC_000014.9 scf260 99.2 True fake: scaffold gap size wrong estimation (local) 53977271 53978412 77674 78815 NC_000014.9 scf260 100.0 True fake: scaffold gap size wrong estimation (local) 53978326 53985400 79677 86783 NC_000014.9 scf260 99.25 True fake: scaffold gap size wrong estimation (local) 53985311 53992416 87419 95312 NC_000014.9 scf260 99.85 True fake: scaffold gap size wrong estimation (local) 53992338 53999632 96030 103999 NC_000014.9 scf260 99.35 True fake: scaffold gap size wrong estimation (local) 53999806 54004351 104873 109418 NC_000014.9 scf260 99.87 True fake: scaffold gap size wrong estimation (local) 54006109 54012826 111838 118567 NC_000014.9 scf260 99.75 True fake: scaffold gap size wrong estimation (local) 54013734 54016001 120194 122476 NC_000014.9 scf260 99.21 True fake: scaffold gap size wrong estimation (local) 54015943 54027784 123238 135803 NC_000014.9 scf260 99.52 True CONTIG scf260 135803 correct 86093951 86095590 1640 1 NC_000014.9 scf261 99.94 True fake: scaffold gap size wrong estimation (local) 86090826 86093755 5611 2682 NC_000014.9 scf261 99.93 True fake: scaffold gap size wrong estimation (local) 86080251 86090919 16940 6272 NC_000014.9 scf261 99.88 True CONTIG scf261 16972 correct 42973074 42977426 1314 5666 NC_000014.9 scf262 99.84 True fake: scaffold gap size wrong estimation (local) 42977342 42992070 6392 22764 NC_000014.9 scf262 99.04 True fake: scaffold gap size wrong estimation (local) 42991982 42997764 23419 29200 NC_000014.9 scf262 99.97 True CONTIG scf262 29200 correct 38927632 38932101 3 4483 NC_000014.9 scf263 99.62 True fake: scaffold gap size wrong estimation (local) 38932010 38934521 5160 7671 NC_000014.9 scf263 99.96 True fake: scaffold gap size wrong estimation (local) 38934423 38936843 8398 10767 NC_000014.9 scf263 97.77 True fake: scaffold gap size wrong estimation (local) 38937343 38938342 12113 13112 NC_000014.9 scf263 99.7 True fake: scaffold gap size wrong estimation (local) 38938355 38939182 14568 15399 NC_000014.9 scf263 99.4 True local misassembly 38939831 38941112 15407 16689 NC_000014.9 scf263 99.84 True fake: scaffold gap size wrong estimation (local) 38941220 38947693 18254 25500 NC_000014.9 scf263 97.8 True fake: scaffold gap size wrong estimation (local) 38947610 38949256 26441 28087 NC_000014.9 scf263 100.0 True fake: scaffold gap size wrong estimation (local) 38949538 38952344 29192 31998 NC_000014.9 scf263 99.89 True fake: scaffold gap size wrong estimation (local) 38952254 38966865 32769 48566 NC_000014.9 scf263 98.65 True CONTIG scf263 49543 correct 61096669 61105497 1 9719 NC_000014.9 scf264 99.43 True fake: scaffold gap size wrong estimation (local) 61105417 61113388 10375 18348 NC_000014.9 scf264 99.85 True fake: scaffold gap size wrong estimation (local) 61113290 61118173 19026 23908 NC_000014.9 scf264 99.73 True fake: scaffold gap size wrong estimation (local) 61118108 61118860 24674 25426 NC_000014.9 scf264 99.73 True indel: indel (> 5bp) 61118861 61119473 25478 26090 NC_000014.9 scf264 100.0 True local misassembly 61119815 61121046 26201 27432 NC_000014.9 scf264 99.92 True fake: scaffold gap size wrong estimation (local) 61121161 61131754 28393 38991 NC_000014.9 scf264 99.87 True fake: scaffold gap size wrong estimation (local) 61131660 61133358 39703 41401 NC_000014.9 scf264 99.82 True CONTIG scf264 41401 correct 41901448 41906412 4993 1 NC_000014.9 scf265 99.38 True fake: scaffold gap size wrong estimation (local) 41896855 41901531 10232 5558 NC_000014.9 scf265 99.91 True fake: scaffold gap size wrong estimation (local) 41890695 41896952 17239 10981 NC_000014.9 scf265 99.95 True fake: scaffold gap size wrong estimation (local) 41880134 41890516 29333 18165 NC_000014.9 scf265 98.93 True fake: scaffold gap size wrong estimation (local) 41876531 41879937 33628 30222 NC_000014.9 scf265 100.0 True fake: scaffold gap size wrong estimation (local) 41873409 41876296 37499 34616 NC_000014.9 scf265 99.83 True fake: scaffold gap size wrong estimation (local) 41864340 41873510 47395 38226 NC_000014.9 scf265 99.91 True fake: scaffold gap size wrong estimation (local) 41856872 41864407 55643 48111 NC_000014.9 scf265 99.84 True fake: scaffold gap size wrong estimation (local) 41844437 41856677 69686 56596 NC_000014.9 scf265 99.58 True fake: scaffold gap size wrong estimation (local) 41838304 41844293 77862 71014 NC_000014.9 scf265 99.15 True fake: scaffold gap size wrong estimation (local) 41829668 41838402 87292 78564 NC_000014.9 scf265 99.85 True fake: scaffold gap size wrong estimation (local) 41826881 41829758 90843 87970 NC_000014.9 scf265 99.79 True fake: scaffold gap size wrong estimation (local) 41816932 41826946 101579 91558 NC_000014.9 scf265 99.83 True fake: scaffold gap size wrong estimation (local) 41813700 41817016 105625 102309 NC_000014.9 scf265 99.97 True fake: scaffold gap size wrong estimation (local) 41805328 41813797 115337 106212 NC_000014.9 scf265 99.19 True fake: scaffold gap size wrong estimation (local) 41803928 41805411 117612 116129 NC_000014.9 scf265 99.93 True fake: scaffold gap size wrong estimation (local) 41795818 41804006 126598 118410 NC_000014.9 scf265 99.94 True fake: scaffold gap size wrong estimation (local) 41792988 41795295 130140 127833 NC_000014.9 scf265 99.96 True fake: scaffold gap size wrong estimation (local) 41784673 41792720 140231 132127 NC_000014.9 scf265 99.22 True fake: scaffold gap size wrong estimation (local) 41781621 41784768 144009 140945 NC_000014.9 scf265 97.05 True fake: scaffold gap size wrong estimation (local) 41771634 41781709 155478 144720 NC_000014.9 scf265 99.5 True fake: scaffold gap size wrong estimation (local) 41765236 41771706 162659 156191 NC_000014.9 scf265 99.95 True fake: scaffold gap size wrong estimation (local) 41757607 41765136 171723 163444 NC_000014.9 scf265 99.38 True CONTIG scf265 171723 correct 32220798 32234690 15330 1 NC_000014.9 scf266 99.0 True fake: scaffold gap size wrong estimation (local) 32220153 32220896 16927 16184 NC_000014.9 scf266 100.0 True local misassembly 32217869 32219960 19044 16953 NC_000014.9 scf266 99.95 True indel: indel (> 5bp) 32217221 32217796 19620 19045 NC_000014.9 scf266 100.0 True fake: scaffold gap size wrong estimation (local) 32214938 32217041 23364 21261 NC_000014.9 scf266 99.95 True fake: scaffold gap size wrong estimation (local) 32213178 32214309 25979 24848 NC_000014.9 scf266 100.0 True local misassembly 32211878 32212882 27062 26058 NC_000014.9 scf266 100.0 True indel: indel (> 5bp) 32210891 32211815 28100 27176 NC_000014.9 scf266 100.0 True fake: scaffold gap size wrong estimation (local) 32203181 32210979 36618 28820 NC_000014.9 scf266 99.88 True fake: scaffold gap size wrong estimation (local) 32199796 32203256 40635 37348 NC_000014.9 scf266 95.0 True fake: scaffold gap size wrong estimation (local) 32198541 32199174 42984 42351 NC_000014.9 scf266 99.84 True local misassembly 32196788 32198219 44416 42985 NC_000014.9 scf266 99.86 True fake: scaffold gap size wrong estimation (local) 32195302 32196877 47017 45442 NC_000014.9 scf266 99.87 True local misassembly 32194065 32194807 47760 47018 NC_000014.9 scf266 100.0 True fake: scaffold gap size wrong estimation (local) 32183465 32193916 61414 49517 NC_000014.9 scf266 95.31 True fake: scaffold gap size wrong estimation (local) 32171063 32183557 75481 62197 NC_000014.9 scf266 99.02 True fake: scaffold gap size wrong estimation (local) 32164320 32170910 83835 76457 NC_000014.9 scf266 98.36 True fake: scaffold gap size wrong estimation (local) 32163486 32164393 85320 84417 NC_000014.9 scf266 99.56 True fake: scaffold gap size wrong estimation (local) 32159958 32163576 89685 86065 NC_000014.9 scf266 99.94 True fake: scaffold gap size wrong estimation (local) 32144520 32160052 106698 90424 NC_000014.9 scf266 99.7 True fake: scaffold gap size wrong estimation (local) 32140317 32144607 111641 107351 NC_000014.9 scf266 99.98 True fake: scaffold gap size wrong estimation (local) 32137755 32140083 114938 112610 NC_000014.9 scf266 100.0 True fake: scaffold gap size wrong estimation (local) 32133820 32137840 119679 115638 NC_000014.9 scf266 99.48 True CONTIG scf266 119679 correct 22943887 22944732 846 1 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22941521 22943378 4371 2515 NC_000014.9 scf267 99.95 True fake: scaffold gap size wrong estimation (local) 22940276 22940965 6733 6044 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22937604 22939219 11208 9593 NC_000014.9 scf267 99.94 True fake: scaffold gap size wrong estimation (local) 22933883 22936759 15643 12767 NC_000014.9 scf267 99.79 True fake: scaffold gap size wrong estimation (local) 22932659 22933961 17673 16371 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22932134 22932658 19645 19121 NC_000014.9 scf267 100.0 True local misassembly 22929909 22931249 21129 19789 NC_000014.9 scf267 99.93 True fake: scaffold gap size wrong estimation (local) 22925169 22930006 27406 22583 NC_000014.9 scf267 99.57 True fake: scaffold gap size wrong estimation (local) 22923626 22925249 29879 28277 NC_000014.9 scf267 98.65 True fake: scaffold gap size wrong estimation (local) 22919080 22923725 35198 30557 NC_000014.9 scf267 99.78 True fake: scaffold gap size wrong estimation (local) 22918199 22919171 36982 36010 NC_000014.9 scf267 99.9 True fake: scaffold gap size wrong estimation (local) 22915660 22917736 39556 37437 NC_000014.9 scf267 97.92 True fake: scaffold gap size wrong estimation (local) 22914991 22915496 41902 41397 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22910796 22912964 46976 44808 NC_000014.9 scf267 99.82 True fake: scaffold gap size wrong estimation (local) 22907241 22910069 51379 48551 NC_000014.9 scf267 99.93 True fake: scaffold gap size wrong estimation (local) 22902683 22906854 56619 52456 NC_000014.9 scf267 99.78 True fake: scaffold gap size wrong estimation (local) 22899626 22902756 60483 57353 NC_000014.9 scf267 99.81 True fake: scaffold gap size wrong estimation (local) 22895157 22899716 65732 61173 NC_000014.9 scf267 99.91 True fake: scaffold gap size wrong estimation (local) 22891722 22894694 69850 66889 NC_000014.9 scf267 99.46 True fake: scaffold gap size wrong estimation (local) 22889563 22891216 72775 71122 NC_000014.9 scf267 99.88 True fake: scaffold gap size wrong estimation (local) 22883900 22888841 79279 74338 NC_000014.9 scf267 99.94 True fake: scaffold gap size wrong estimation (local) 22868368 22883108 97210 80888 NC_000014.9 scf267 99.08 True fake: scaffold gap size wrong estimation (local) 22864611 22868038 102826 99368 NC_000014.9 scf267 98.99 True fake: scaffold gap size wrong estimation (local) 22863336 22864455 104925 103806 NC_000014.9 scf267 100.0 True local misassembly 22861316 22862613 106677 105380 NC_000014.9 scf267 99.85 True fake: scaffold gap size wrong estimation (local) 22859443 22860103 109551 108891 NC_000014.9 scf267 99.55 True local misassembly 22858040 22859142 110654 109552 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22856829 22857953 113152 112028 NC_000014.9 scf267 99.91 True local misassembly 22855556 22856388 113985 113153 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22854198 22854708 116295 115785 NC_000014.9 scf267 99.8 True local misassembly 22852275 22854039 118060 116296 NC_000014.9 scf267 99.72 True fake: scaffold gap size wrong estimation (local) 22850443 22852346 120859 118956 NC_000014.9 scf267 99.84 True fake: scaffold gap size wrong estimation (local) 22843558 22850523 128577 121600 NC_000014.9 scf267 99.71 True fake: scaffold gap size wrong estimation (local) 22840678 22843657 132225 129247 NC_000014.9 scf267 99.77 True fake: scaffold gap size wrong estimation (local) 22832997 22840779 140690 133074 NC_000014.9 scf267 96.95 True fake: scaffold gap size wrong estimation (local) 22831495 22833087 143030 141294 NC_000014.9 scf267 95.32 True fake: scaffold gap size wrong estimation (local) 22829801 22830876 145794 144719 NC_000014.9 scf267 99.72 True indel: indel (<= 5bp) 22829124 22829800 146472 145796 NC_000014.9 scf267 99.85 True fake: scaffold gap size wrong estimation (local) 22827517 22829061 149111 147567 NC_000014.9 scf267 99.81 True local misassembly 22826769 22827329 149672 149112 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22825500 22826800 152365 151003 NC_000014.9 scf267 95.38 True fake: scaffold gap size wrong estimation (local) 22824619 22825413 153185 152391 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22820663 22823833 158019 154849 NC_000014.9 scf267 99.97 True fake: scaffold gap size wrong estimation (local) 22819411 22820758 160052 158705 NC_000014.9 scf267 99.85 True indel: indel (<= 5bp) 22818696 22819409 160766 160053 NC_000014.9 scf267 99.58 True local misassembly 22817444 22818476 161818 160786 NC_000014.9 scf267 99.9 True fake: scaffold gap size wrong estimation (local) 22813881 22817133 166209 163047 NC_000014.9 scf267 95.73 True fake: scaffold gap size wrong estimation (local) 22812799 22813799 168169 167169 NC_000014.9 scf267 100.0 True local misassembly 22811845 22812550 168875 168170 NC_000014.9 scf267 100.0 True indel: indel (<= 5bp) 22810417 22811844 170304 168877 NC_000014.9 scf267 99.93 True fake: scaffold gap size wrong estimation (local) 22806271 22810025 175293 171540 NC_000014.9 scf267 99.79 True fake: scaffold gap size wrong estimation (local) 22804516 22805170 177849 177195 NC_000014.9 scf267 99.39 True fake: scaffold gap size wrong estimation (local) 22801520 22804169 181506 178886 NC_000014.9 scf267 98.57 True fake: scaffold gap size wrong estimation (local) 22800694 22801617 183168 182245 NC_000014.9 scf267 99.78 True indel: indel (<= 5bp) 22799548 22800689 184310 183169 NC_000014.9 scf267 99.74 True local misassembly 22798100 22799250 185461 184311 NC_000014.9 scf267 99.74 True fake: scaffold gap size wrong estimation (local) 22795709 22798192 188864 186381 NC_000014.9 scf267 99.64 True fake: scaffold gap size wrong estimation (local) 22793027 22795146 192314 190184 NC_000014.9 scf267 99.06 True fake: scaffold gap size wrong estimation (local) 22791966 22792896 194443 193513 NC_000014.9 scf267 99.68 True local misassembly 22790997 22791843 195290 194444 NC_000014.9 scf267 99.65 True fake: scaffold gap size wrong estimation (local) 22790335 22790884 197050 196501 NC_000014.9 scf267 100.0 True indel: indel (> 5bp) 22789631 22790327 197747 197051 NC_000014.9 scf267 100.0 True fake: scaffold gap size wrong estimation (local) 22786193 22787888 201868 200173 NC_000014.9 scf267 99.82 True fake: scaffold gap size wrong estimation (local) 22784508 22785846 204624 203286 NC_000014.9 scf267 100.0 True local misassembly 22783617 22784184 205192 204625 NC_000014.9 scf267 99.82 True fake: scaffold gap size wrong estimation (local) 22782978 22783709 206845 206101 NC_000014.9 scf267 97.99 True fake: scaffold gap size wrong estimation (local) 22779551 22782659 211430 208322 NC_000014.9 scf267 99.9 True fake: scaffold gap size wrong estimation (local) 22777962 22779466 213877 212373 NC_000014.9 scf267 99.8 True local misassembly 22777149 22777802 214531 213878 NC_000014.9 scf267 99.69 True fake: scaffold gap size wrong estimation (local) 22772499 22776787 220075 215783 NC_000014.9 scf267 99.84 True fake: scaffold gap size wrong estimation (local) 22765899 22772327 227404 220973 NC_000014.9 scf267 99.78 True fake: scaffold gap size wrong estimation (local) 22764034 22765972 230457 228489 NC_000014.9 scf267 98.37 True CONTIG scf267 230457 correct 102636351 102643123 6886 119 NC_000014.9 scf268 99.72 True fake: scaffold gap size wrong estimation (local) 102633746 102636144 10248 7938 NC_000014.9 scf268 96.21 True fake: scaffold gap size wrong estimation (local) 102632301 102633813 12705 11197 NC_000014.9 scf268 97.65 True fake: scaffold gap size wrong estimation (local) 102631400 102632027 13525 12898 NC_000014.9 scf268 99.84 True fake: scaffold gap size wrong estimation (local) 102628902 102631404 16777 14276 NC_000014.9 scf268 99.72 True fake: scaffold gap size wrong estimation (local) 102624049 102628977 23359 17524 NC_000014.9 scf268 99.86 True fake: scaffold gap size wrong estimation (local) 102615623 102623425 34107 24803 NC_000014.9 scf268 95.23 True fake: scaffold gap size wrong estimation (local) 102614400 102614900 36310 35810 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102610095 102613477 42493 37994 NC_000014.9 scf268 99.53 True fake: scaffold gap size wrong estimation (local) 102609026 102609935 43690 42781 NC_000014.9 scf268 99.89 True fake: scaffold gap size wrong estimation (local) 102605076 102607847 48572 45803 NC_000014.9 scf268 99.71 True fake: scaffold gap size wrong estimation (local) 102601058 102605115 54178 49332 NC_000014.9 scf268 99.5 True fake: scaffold gap size wrong estimation (local) 102598660 102600297 57461 55825 NC_000014.9 scf268 99.94 True fake: scaffold gap size wrong estimation (local) 102593026 102597115 64224 58965 NC_000014.9 scf268 98.89 True fake: scaffold gap size wrong estimation (local) 102588078 102592839 69910 65188 NC_000014.9 scf268 99.03 True fake: scaffold gap size wrong estimation (local) 102582593 102588168 76210 70638 NC_000014.9 scf268 99.78 True fake: scaffold gap size wrong estimation (local) 102581337 102582315 78401 77423 NC_000014.9 scf268 100.0 True local misassembly 102579832 102580881 79721 78672 NC_000014.9 scf268 99.9 True fake: scaffold gap size wrong estimation (local) 102577913 102579831 82592 80674 NC_000014.9 scf268 99.95 True indel: indel (<= 5bp) 102576583 102577911 83921 82593 NC_000014.9 scf268 99.85 True fake: scaffold gap size wrong estimation (local) 102575340 102575950 86033 85423 NC_000014.9 scf268 100.0 True local misassembly 102574143 102575201 87092 86034 NC_000014.9 scf268 99.91 True fake: scaffold gap size wrong estimation (local) 102566163 102572685 97205 89828 NC_000014.9 scf268 98.88 True fake: scaffold gap size wrong estimation (local) 102563614 102564678 100548 99484 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102561375 102561908 103714 103181 NC_000014.9 scf268 99.81 True fake: scaffold gap size wrong estimation (local) 102559161 102561316 107244 105089 NC_000014.9 scf268 99.81 True fake: scaffold gap size wrong estimation (local) 102558256 102558934 109202 108524 NC_000014.9 scf268 99.56 True local misassembly 102556102 102557971 111072 109203 NC_000014.9 scf268 99.68 True fake: scaffold gap size wrong estimation (local) 102554567 102556101 113457 111923 NC_000014.9 scf268 99.8 True local misassembly 102552699 102554146 114916 113469 NC_000014.9 scf268 99.86 True fake: scaffold gap size wrong estimation (local) 102551679 102552777 117159 116061 NC_000014.9 scf268 99.55 True local misassembly 102550049 102550989 118300 117360 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102548185 102549545 121250 119890 NC_000014.9 scf268 100.0 True local misassembly 102546620 102547764 122395 121251 NC_000014.9 scf268 99.74 True fake: scaffold gap size wrong estimation (local) 102537118 102546494 133861 123694 NC_000014.9 scf268 99.56 True fake: scaffold gap size wrong estimation (local) 102535882 102536764 135926 135044 NC_000014.9 scf268 99.89 True fake: scaffold gap size wrong estimation (local) 102534721 102535675 137026 136072 NC_000014.9 scf268 99.79 True fake: scaffold gap size wrong estimation (local) 102532086 102532879 140437 139644 NC_000014.9 scf268 99.87 True fake: scaffold gap size wrong estimation (local) 102530580 102532050 143982 142504 NC_000014.9 scf268 99.12 True fake: scaffold gap size wrong estimation (local) 102528173 102528884 147172 146461 NC_000014.9 scf268 99.86 True fake: scaffold gap size wrong estimation (local) 102527035 102528172 148556 147419 NC_000014.9 scf268 99.82 True fake: scaffold gap size wrong estimation (local) 102526376 102527082 150069 149363 NC_000014.9 scf268 100.0 True indel: indel (> 5bp) 102525821 102526375 150657 150103 NC_000014.9 scf268 100.0 True indel: indel (> 5bp) 102523541 102525618 152905 150828 NC_000014.9 scf268 100.0 True indel: indel (> 5bp) 102522249 102523488 154185 152946 NC_000014.9 scf268 99.92 True fake: scaffold gap size wrong estimation (local) 102521447 102522248 155259 154458 NC_000014.9 scf268 99.75 True local misassembly 102520525 102521064 155943 155404 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102516357 102520478 161046 156730 NC_000014.9 scf268 97.61 True fake: scaffold gap size wrong estimation (local) 102513774 102515918 164414 162270 NC_000014.9 scf268 99.91 True fake: scaffold gap size wrong estimation (local) 102512009 102513873 167137 165273 NC_000014.9 scf268 99.84 True fake: scaffold gap size wrong estimation (local) 102509821 102512103 170308 168025 NC_000014.9 scf268 99.87 True fake: scaffold gap size wrong estimation (local) 102503422 102509536 178373 171408 NC_000014.9 scf268 99.71 True fake: scaffold gap size wrong estimation (local) 102489478 102503301 193907 179272 NC_000014.9 scf268 99.52 True fake: scaffold gap size wrong estimation (local) 102488974 102489571 195200 194603 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102484767 102486869 199232 197130 NC_000014.9 scf268 99.86 True fake: scaffold gap size wrong estimation (local) 102484003 102484861 200924 200066 NC_000014.9 scf268 99.77 True fake: scaffold gap size wrong estimation (local) 102481312 102482759 203260 201813 NC_000014.9 scf268 100.0 True fake: scaffold gap size wrong estimation (local) 102477332 102480922 209196 204627 NC_000014.9 scf268 95.68 True local misassembly 102471204 102476908 215675 209257 NC_000014.9 scf268 98.93 True fake: scaffold gap size wrong estimation (local) 102468352 102470542 219241 217051 NC_000014.9 scf268 99.95 True fake: scaffold gap size wrong estimation (local) 102463746 102468419 224583 219909 NC_000014.9 scf268 99.91 True fake: scaffold gap size wrong estimation (local) 102460939 102463374 228185 225750 NC_000014.9 scf268 99.84 True fake: scaffold gap size wrong estimation (local) 102458097 102460839 231801 229060 NC_000014.9 scf268 99.96 True fake: scaffold gap size wrong estimation (local) 102455728 102456625 234937 234040 NC_000014.9 scf268 99.89 True local misassembly 102456591 102457726 236073 234938 NC_000014.9 scf268 99.91 True fake: scaffold gap size wrong estimation (local) 102453821 102455712 239787 237896 NC_000014.9 scf268 99.89 True fake: scaffold gap size wrong estimation (local) 102444703 102453914 250678 240687 NC_000014.9 scf268 97.5 True fake: scaffold gap size wrong estimation (local) 102442035 102444789 254078 251413 NC_000014.9 scf268 96.66 True fake: scaffold gap size wrong estimation (local) 102438858 102441244 258057 255671 NC_000014.9 scf268 99.87 True fake: scaffold gap size wrong estimation (local) 102436535 102438947 261218 258819 NC_000014.9 scf268 99.34 True fake: scaffold gap size wrong estimation (local) 102432969 102436629 265638 261954 NC_000014.9 scf268 99.19 True fake: scaffold gap size wrong estimation (local) 102431579 102432778 267817 266614 NC_000014.9 scf268 99.5 True fake: scaffold gap size wrong estimation (local) 102428257 102431057 271982 269182 NC_000014.9 scf268 99.93 True relocation, inconsistency = 17396853 85023781 85031375 279605 272011 NC_000014.9 scf268 99.91 True CONTIG scf268 282178 misassembled 39358173 39358835 1213 1875 NC_000014.9 scf269 100.0 True fake: scaffold gap size wrong estimation (local) 39359092 39383021 3001 29753 NC_000014.9 scf269 98.09 True fake: scaffold gap size wrong estimation (local) 39382956 39395062 30520 43176 NC_000014.9 scf269 97.74 True fake: scaffold gap size wrong estimation (local) 39395230 39402699 44274 52341 NC_000014.9 scf269 95.81 True fake: scaffold gap size wrong estimation (local) 39402811 39412726 53236 63877 NC_000014.9 scf269 99.38 True fake: scaffold gap size wrong estimation (local) 39412628 39422289 64544 77056 NC_000014.9 scf269 96.93 True fake: scaffold gap size wrong estimation (local) 39422191 39422980 77706 78495 NC_000014.9 scf269 99.75 True fake: scaffold gap size wrong estimation (local) 39423088 39427526 78720 83187 NC_000014.9 scf269 99.1 True fake: scaffold gap size wrong estimation (local) 39427438 39441980 83817 99144 NC_000014.9 scf269 99.58 True fake: scaffold gap size wrong estimation (local) 39441885 39449054 99928 107722 NC_000014.9 scf269 97.0 True fake: scaffold gap size wrong estimation (local) 39448957 39461787 108381 121906 NC_000014.9 scf269 99.6 True fake: scaffold gap size wrong estimation (local) 39461692 39465375 122520 126203 NC_000014.9 scf269 99.95 True fake: scaffold gap size wrong estimation (local) 39465320 39472670 126881 135068 NC_000014.9 scf269 99.59 True fake: scaffold gap size wrong estimation (local) 39473345 39481312 137715 146527 NC_000014.9 scf269 98.94 True CONTIG scf269 146527 correct 45551411 45569770 1 19147 NC_000014.9 scf270 99.08 True fake: scaffold gap size wrong estimation (local) 45570381 45577085 20596 27866 NC_000014.9 scf270 96.17 True fake: scaffold gap size wrong estimation (local) 45577310 45580496 28809 31996 NC_000014.9 scf270 99.94 True fake: scaffold gap size wrong estimation (local) 45580769 45591288 32999 44292 NC_000014.9 scf270 99.17 True fake: scaffold gap size wrong estimation (local) 45591194 45593930 45050 47786 NC_000014.9 scf270 99.82 True fake: scaffold gap size wrong estimation (local) 45593837 45596775 48490 51428 NC_000014.9 scf270 99.9 True CONTIG scf270 51428 correct 59550692 59551783 1092 1 NC_000014.9 scf271 99.91 True fake: scaffold gap size wrong estimation (local) 59536747 59550790 16736 1898 NC_000014.9 scf271 99.57 True fake: scaffold gap size wrong estimation (local) 59535641 59536840 18735 17536 NC_000014.9 scf271 99.83 True local misassembly 59533988 59535465 20213 18736 NC_000014.9 scf271 100.0 True fake: scaffold gap size wrong estimation (local) 59531506 59533836 23599 21269 NC_000014.9 scf271 99.83 True fake: scaffold gap size wrong estimation (local) 59530258 59531589 25798 24467 NC_000014.9 scf271 99.92 True local misassembly 59529357 59530097 26539 25799 NC_000014.9 scf271 99.73 True fake: scaffold gap size wrong estimation (local) 59524340 59529455 33309 27367 NC_000014.9 scf271 98.9 True fake: scaffold gap size wrong estimation (local) 59519049 59523856 39413 34606 NC_000014.9 scf271 99.88 True CONTIG scf271 39413 correct 70404096 70407320 3224 1 NC_000014.9 scf272 99.72 True fake: scaffold gap size wrong estimation (local) 70396310 70404173 11833 3970 NC_000014.9 scf272 99.85 True fake: scaffold gap size wrong estimation (local) 70393968 70395476 14995 13488 NC_000014.9 scf272 99.93 True fake: scaffold gap size wrong estimation (local) 70387827 70393138 21937 16625 NC_000014.9 scf272 99.91 True fake: scaffold gap size wrong estimation (local) 70381993 70387654 28519 22859 NC_000014.9 scf272 99.72 True fake: scaffold gap size wrong estimation (local) 70375434 70382086 35835 29174 NC_000014.9 scf272 99.38 True fake: scaffold gap size wrong estimation (local) 70364228 70375531 49396 36512 NC_000014.9 scf272 98.42 True fake: scaffold gap size wrong estimation (local) 70354842 70364152 60416 50314 NC_000014.9 scf272 99.76 True fake: scaffold gap size wrong estimation (local) 70352691 70354919 63382 61129 NC_000014.9 scf272 98.8 True fake: scaffold gap size wrong estimation (local) 70342129 70352328 74698 64499 NC_000014.9 scf272 99.88 True fake: scaffold gap size wrong estimation (local) 70321983 70342204 97908 75427 NC_000014.9 scf272 98.73 True fake: scaffold gap size wrong estimation (local) 70318702 70321179 101890 99418 NC_000014.9 scf272 99.64 True fake: scaffold gap size wrong estimation (local) 70317473 70318794 104434 103113 NC_000014.9 scf272 99.77 True fake: scaffold gap size wrong estimation (local) 70309044 70317571 115814 105621 NC_000014.9 scf272 97.91 True CONTIG scf272 115814 correct 34735248 34736207 4040 3081 NC_000014.9 scf273 99.58 True fake: scaffold gap size wrong estimation (local) 34733203 34733926 6867 6144 NC_000014.9 scf273 99.72 True indel: stretch of mismatches 34732181 34732785 7889 7285 NC_000014.9 scf273 99.01 True fake: scaffold gap size wrong estimation (local) 34731603 34732180 9256 8679 NC_000014.9 scf273 98.96 True local misassembly 34730856 34731419 10108 9545 NC_000014.9 scf273 100.0 True local misassembly 34729907 34730456 10847 10298 NC_000014.9 scf273 99.82 True fake: scaffold gap size wrong estimation (local) 34726860 34729466 14854 12248 NC_000014.9 scf273 99.85 True fake: scaffold gap size wrong estimation (local) 34725846 34726733 16767 15880 NC_000014.9 scf273 99.77 True fake: scaffold gap size wrong estimation (local) 34724611 34725203 18119 17527 NC_000014.9 scf273 99.83 True fake: scaffold gap size wrong estimation (local) 34722656 34724135 20641 19162 NC_000014.9 scf273 99.93 True fake: scaffold gap size wrong estimation (local) 34708769 34722755 38988 21318 NC_000014.9 scf273 99.44 True fake: scaffold gap size wrong estimation (local) 34706048 34708651 41738 39136 NC_000014.9 scf273 99.96 True fake: scaffold gap size wrong estimation (local) 34703826 34705686 44728 42868 NC_000014.9 scf273 99.95 True fake: scaffold gap size wrong estimation (local) 34699360 34701453 50487 48394 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34697711 34698771 52948 51888 NC_000014.9 scf273 99.81 True fake: scaffold gap size wrong estimation (local) 34695941 34697382 54517 53076 NC_000014.9 scf273 99.93 True fake: scaffold gap size wrong estimation (local) 34694362 34695074 57144 56432 NC_000014.9 scf273 100.0 True local misassembly 34692718 34694007 58434 57145 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34690909 34691559 61197 60547 NC_000014.9 scf273 99.85 True fake: scaffold gap size wrong estimation (local) 34682408 34689931 72984 63614 NC_000014.9 scf273 97.25 True fake: scaffold gap size wrong estimation (local) 34681303 34682257 75379 74425 NC_000014.9 scf273 99.9 True local misassembly 34680283 34680873 75970 75380 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34664642 34679739 93950 77436 NC_000014.9 scf273 95.9 True fake: scaffold gap size wrong estimation (local) 34659822 34662871 99497 96448 NC_000014.9 scf273 99.97 True fake: scaffold gap size wrong estimation (local) 34657315 34659184 102782 100913 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34654792 34656901 106137 104028 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34653024 34654889 108822 106957 NC_000014.9 scf273 99.95 True local misassembly 34651881 34652805 109747 108823 NC_000014.9 scf273 100.0 True fake: scaffold gap size wrong estimation (local) 34650543 34651705 113265 112067 NC_000014.9 scf273 96.91 True fake: scaffold gap size wrong estimation (local) 34645690 34647357 117374 115707 NC_000014.9 scf273 99.88 True fake: scaffold gap size wrong estimation (local) 34643208 34644684 120676 119200 NC_000014.9 scf273 99.59 True fake: scaffold gap size wrong estimation (local) 34639422 34641650 125201 122956 NC_000014.9 scf273 98.93 True fake: scaffold gap size wrong estimation (local) 34638427 34639355 129200 128272 NC_000014.9 scf273 99.78 True fake: scaffold gap size wrong estimation (local) 34636059 34636930 132480 131609 NC_000014.9 scf273 99.66 True CONTIG scf273 132480 correct 106677725 106682716 2960 8165 NC_000014.9 scf274 97.33 True fake: scaffold gap size wrong estimation (local) 106682637 106694499 9010 21813 NC_000014.9 scf274 98.19 True fake: scaffold gap size wrong estimation (local) 106694807 106702713 23055 30948 NC_000014.9 scf274 98.84 True fake: scaffold gap size wrong estimation (local) 106702618 106704594 31661 33637 NC_000014.9 scf274 99.19 True CONTIG scf274 33637 correct 65425472 65425994 1 523 NC_000014.9 scf275 100.0 True fake: scaffold gap size wrong estimation (local) 65425909 65431010 1557 6475 NC_000014.9 scf275 95.06 True fake: scaffold gap size wrong estimation (local) 65431175 65436470 7500 13573 NC_000014.9 scf275 99.36 True fake: scaffold gap size wrong estimation (local) 65436569 65439993 14422 17839 NC_000014.9 scf275 99.74 True fake: scaffold gap size wrong estimation (local) 65439959 65457990 18597 38055 NC_000014.9 scf275 98.95 True fake: scaffold gap size wrong estimation (local) 65458127 65468049 38953 48875 NC_000014.9 scf275 99.98 True fake: scaffold gap size wrong estimation (local) 65467965 65480367 49588 63589 NC_000014.9 scf275 99.26 True fake: scaffold gap size wrong estimation (local) 65480318 65480898 64400 64980 NC_000014.9 scf275 100.0 True fake: scaffold gap size wrong estimation (local) 65480933 65496717 66074 82657 NC_000014.9 scf275 99.39 True fake: scaffold gap size wrong estimation (local) 65496628 65502449 83328 89149 NC_000014.9 scf275 100.0 True fake: scaffold gap size wrong estimation (local) 65502353 65505325 89788 92760 NC_000014.9 scf275 99.97 True fake: scaffold gap size wrong estimation (local) 65505503 65508517 93652 96666 NC_000014.9 scf275 99.97 True fake: scaffold gap size wrong estimation (local) 65508938 65522903 97812 112491 NC_000014.9 scf275 99.71 True CONTIG scf275 112491 correct 20123452 20128066 4548 6 NC_000014.9 scf276 98.4 True fake: scaffold gap size wrong estimation (local) 20119642 20123542 9192 5292 NC_000014.9 scf276 99.95 True fake: scaffold gap size wrong estimation (local) 20109754 20119733 19839 9860 NC_000014.9 scf276 99.93 True CONTIG scf276 19839 correct 44710956 44721690 15 11500 NC_000014.9 scf277 99.7 True fake: scaffold gap size wrong estimation (local) 44721796 44735093 12351 26380 NC_000014.9 scf277 99.51 True fake: scaffold gap size wrong estimation (local) 44735257 44737041 27300 29084 NC_000014.9 scf277 100.0 True fake: scaffold gap size wrong estimation (local) 44738401 44739279 31305 32183 NC_000014.9 scf277 100.0 True CONTIG scf277 32183 correct 35617650 35620012 2290 1 NC_000014.9 scf278 95.09 True fake: scaffold gap size wrong estimation (local) 35612701 35617541 8830 3213 NC_000014.9 scf278 99.67 True fake: scaffold gap size wrong estimation (local) 35609205 35612445 12433 9090 NC_000014.9 scf278 97.15 True fake: scaffold gap size wrong estimation (local) 35599472 35609296 23167 13343 NC_000014.9 scf278 100.0 True fake: scaffold gap size wrong estimation (local) 35590527 35599571 32807 23865 NC_000014.9 scf278 98.87 True fake: scaffold gap size wrong estimation (local) 35587982 35590623 36147 33506 NC_000014.9 scf278 99.96 True fake: scaffold gap size wrong estimation (local) 35586404 35587030 38507 37881 NC_000014.9 scf278 100.0 True CONTIG scf278 38507 correct 62524133 62524978 1 845 NC_000014.9 scf279 99.88 True fake: scaffold gap size wrong estimation (local) 62525962 62535945 2805 12829 NC_000014.9 scf279 99.49 True CONTIG scf279 12829 correct 92850944 92853453 4434 1808 NC_000014.9 scf280 95.58 True fake: scaffold gap size wrong estimation (local) 92850180 92851011 5921 5090 NC_000014.9 scf280 100.0 True fake: scaffold gap size wrong estimation (local) 92849428 92850179 6827 6076 NC_000014.9 scf280 99.87 True local misassembly 92848304 92849206 7747 6845 NC_000014.9 scf280 99.78 True fake: scaffold gap size wrong estimation (local) 92845549 92848403 11379 8525 NC_000014.9 scf280 99.82 True fake: scaffold gap size wrong estimation (local) 92845085 92845622 13244 12707 NC_000014.9 scf280 99.63 True local misassembly 92843839 92844721 14127 13245 NC_000014.9 scf280 99.66 True fake: scaffold gap size wrong estimation (local) 92838556 92843818 20713 15451 NC_000014.9 scf280 99.94 True fake: scaffold gap size wrong estimation (local) 92832311 92838653 28654 21386 NC_000014.9 scf280 99.29 True fake: scaffold gap size wrong estimation (local) 92815918 92832410 47949 29362 NC_000014.9 scf280 99.28 True fake: scaffold gap size wrong estimation (local) 92811943 92815720 52623 48846 NC_000014.9 scf280 99.89 True fake: scaffold gap size wrong estimation (local) 92809754 92812024 55609 53339 NC_000014.9 scf280 99.91 True fake: scaffold gap size wrong estimation (local) 92808578 92809848 57906 56636 NC_000014.9 scf280 99.92 True local misassembly 92807618 92808191 58480 57907 NC_000014.9 scf280 99.83 True fake: scaffold gap size wrong estimation (local) 92806506 92807160 60906 60252 NC_000014.9 scf280 100.0 True fake: scaffold gap size wrong estimation (local) 92802861 92804713 65108 63256 NC_000014.9 scf280 99.95 True local misassembly 92801662 92802370 65817 65109 NC_000014.9 scf280 99.86 True fake: scaffold gap size wrong estimation (local) 92799527 92801749 69192 66970 NC_000014.9 scf280 99.91 True fake: scaffold gap size wrong estimation (local) 92796982 92799351 72559 70190 NC_000014.9 scf280 99.92 True fake: scaffold gap size wrong estimation (local) 92790256 92796715 81044 73732 NC_000014.9 scf280 99.81 True fake: scaffold gap size wrong estimation (local) 92786066 92790353 85923 81636 NC_000014.9 scf280 99.93 True fake: scaffold gap size wrong estimation (local) 92785251 92786126 87859 86984 NC_000014.9 scf280 99.66 True fake: scaffold gap size wrong estimation (local) 92779487 92785334 95298 88659 NC_000014.9 scf280 99.97 True fake: scaffold gap size wrong estimation (local) 92777909 92778953 97792 96723 NC_000014.9 scf280 97.01 True fake: scaffold gap size wrong estimation (local) 92774415 92775252 102302 101456 NC_000014.9 scf280 98.94 True fake: scaffold gap size wrong estimation (local) 92772176 92774504 105789 103461 NC_000014.9 scf280 100.0 True indel: indel (<= 5bp) 92769229 92772174 108735 105790 NC_000014.9 scf280 100.0 True fake: scaffold gap size wrong estimation (local) 92767810 92768425 110878 110263 NC_000014.9 scf280 100.0 True CONTIG scf280 110878 correct 30369556 30384613 3 15805 NC_000014.9 scf281 99.82 True fake: scaffold gap size wrong estimation (local) 30384519 30391436 16503 24164 NC_000014.9 scf281 99.99 True fake: scaffold gap size wrong estimation (local) 30391342 30396656 24949 30061 NC_000014.9 scf281 96.2 True fake: scaffold gap size wrong estimation (local) 30396561 30405229 30672 40058 NC_000014.9 scf281 99.95 True CONTIG scf281 41388 correct 59487168 59492837 5670 1 NC_000014.9 scf282 99.91 True fake: scaffold gap size wrong estimation (local) 59476139 59487216 17363 6521 NC_000014.9 scf282 97.16 True fake: scaffold gap size wrong estimation (local) 59469569 59476238 24894 18046 NC_000014.9 scf282 99.66 True fake: scaffold gap size wrong estimation (local) 59466736 59469478 28637 25895 NC_000014.9 scf282 99.89 True fake: scaffold gap size wrong estimation (local) 59455726 59466821 41250 29357 NC_000014.9 scf282 99.94 True fake: scaffold gap size wrong estimation (local) 59449680 59455821 48021 41880 NC_000014.9 scf282 99.93 True CONTIG scf282 48021 correct 66561258 66569440 1 8183 NC_000014.9 scf283 100.0 True fake: scaffold gap size wrong estimation (local) 66569538 66572981 9022 12465 NC_000014.9 scf283 100.0 True fake: scaffold gap size wrong estimation (local) 66572883 66582472 13186 22774 NC_000014.9 scf283 99.97 True CONTIG scf283 22774 correct 85848712 85850433 1 1722 NC_000014.9 scf284 100.0 True fake: scaffold gap size wrong estimation (local) 85850337 85852214 2537 4414 NC_000014.9 scf284 99.95 True local misassembly 85852494 85853487 4415 5408 NC_000014.9 scf284 99.9 True fake: scaffold gap size wrong estimation (local) 85853389 85861791 6456 15627 NC_000014.9 scf284 98.94 True fake: scaffold gap size wrong estimation (local) 85861696 85871275 16280 25864 NC_000014.9 scf284 99.83 True fake: scaffold gap size wrong estimation (local) 85871180 85874383 26505 29708 NC_000014.9 scf284 100.0 True fake: scaffold gap size wrong estimation (local) 85874297 85876583 30464 32750 NC_000014.9 scf284 99.96 True fake: scaffold gap size wrong estimation (local) 85876793 85885695 33752 42655 NC_000014.9 scf284 99.98 True CONTIG scf284 42655 correct 60927661 60936383 11491 2706 NC_000014.9 scf285 99.85 True fake: scaffold gap size wrong estimation (local) 60914417 60927760 26461 12352 NC_000014.9 scf285 99.79 True fake: scaffold gap size wrong estimation (local) 60912857 60913622 28843 28078 NC_000014.9 scf285 99.74 True CONTIG scf285 28843 correct 105960587 105961606 1 1020 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 105961911 105963235 2675 3999 NC_000014.9 scf286 100.0 True local misassembly 105963870 105964717 4000 4847 NC_000014.9 scf286 99.76 True fake: scaffold gap size wrong estimation (local) 105964668 105966954 6316 8602 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 105966972 105974363 9463 16854 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 105976407 105986624 19691 29931 NC_000014.9 scf286 99.76 True fake: scaffold gap size wrong estimation (local) 105986811 105989055 30760 33004 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 105989319 105995386 34124 40759 NC_000014.9 scf286 96.71 True fake: scaffold gap size wrong estimation (local) 105995294 105998081 41487 44274 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 105997983 105999756 44959 46732 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 106001441 106002570 49100 50229 NC_000014.9 scf286 100.0 True fake: scaffold gap size wrong estimation (local) 106003076 106006318 51529 54771 NC_000014.9 scf286 99.94 True fake: scaffold gap size wrong estimation (local) 106007246 106011412 56549 63313 NC_000014.9 scf286 98.42 True fake: scaffold gap size wrong estimation (local) 106012198 106014249 64915 66966 NC_000014.9 scf286 99.9 True fake: scaffold gap size wrong estimation (local) 106015319 106017699 68741 71121 NC_000014.9 scf286 100.0 True CONTIG scf286 71121 correct 106359807 106360637 831 1 NC_000014.9 scf287 98.56 True local misassembly 106357879 106359399 2352 832 NC_000014.9 scf287 99.87 True fake: scaffold gap size wrong estimation (local) 106356016 106357968 5107 3151 NC_000014.9 scf287 99.34 True fake: scaffold gap size wrong estimation (local) 106354018 106354807 8007 7218 NC_000014.9 scf287 99.11 True relocation, scaffold gap is present, inconsistency = 24072 106323703 106328090 14879 9863 NC_000014.9 scf287 95.44 True fake: scaffold gap size wrong estimation (local) 106319331 106323621 19648 15358 NC_000014.9 scf287 99.93 True fake: scaffold gap size wrong estimation (local) 106314112 106319162 25695 20647 NC_000014.9 scf287 99.94 True fake: scaffold gap size wrong estimation (local) 106311865 106314211 28713 26423 NC_000014.9 scf287 97.49 True fake: scaffold gap size wrong estimation (local) 106307712 106311938 33702 29478 NC_000014.9 scf287 99.76 True fake: scaffold gap size wrong estimation (local) 106303604 106307543 38541 34611 NC_000014.9 scf287 99.44 True fake: scaffold gap size wrong estimation (local) 106301312 106303319 41679 39672 NC_000014.9 scf287 99.4 True fake: scaffold gap size wrong estimation (local) 106300677 106301233 43141 42585 NC_000014.9 scf287 99.64 True local misassembly 106298655 106300338 44825 43142 NC_000014.9 scf287 100.0 True fake: scaffold gap size wrong estimation (local) 106297422 106298225 48013 47210 NC_000014.9 scf287 99.75 True fake: scaffold gap size wrong estimation (local) 106293076 106296695 53426 49807 NC_000014.9 scf287 99.92 True fake: scaffold gap size wrong estimation (local) 106288936 106292808 58375 54464 NC_000014.9 scf287 98.88 True fake: scaffold gap size wrong estimation (local) 106287353 106289032 60741 59063 NC_000014.9 scf287 99.82 True fake: not a misassembly (possible transposable element) 105950547 105955241 65436 60742 NC_000014.9 scf287 100.0 True fake: not a misassembly (possible transposable element) 106281981 106283382 66838 65437 NC_000014.9 scf287 99.71 True fake: not a misassembly (possible transposable element) 105944979 105949994 71686 66873 NC_000014.9 scf287 95.95 True fake: not a misassembly (possible transposable element) 106274505 106277921 75104 71688 NC_000014.9 scf287 99.94 True relocation, inconsistency = 330899 105935730 105943605 83034 75105 NC_000014.9 scf287 99.31 True fake: not a misassembly (possible transposable element) 106263173 106268821 88683 83035 NC_000014.9 scf287 99.93 True fake: not a misassembly (possible transposable element) 105927561 105931346 92680 88895 NC_000014.9 scf287 99.95 True fake: not a misassembly (possible transposable element) 106258196 106260149 95144 93192 NC_000014.9 scf287 99.8 True fake: not a misassembly (possible transposable element) 105921048 105925883 99980 95145 NC_000014.9 scf287 100.0 True relocation, inconsistency = -334190 106250947 106255237 104273 99981 NC_000014.9 scf287 99.84 True indel: indel (> 5bp) 106250152 106250924 105097 104324 NC_000014.9 scf287 99.22 True fake: not a misassembly (possible transposable element) 105916539 105917619 106201 105121 NC_000014.9 scf287 100.0 True fake: not a misassembly (possible transposable element) 106248005 106249719 107926 106212 NC_000014.9 scf287 99.65 True relocation, inconsistency = 332325 105913844 105915679 109762 107927 NC_000014.9 scf287 99.95 True fake: scaffold gap size wrong estimation (local) 105907943 105912827 116502 111487 NC_000014.9 scf287 99.51 True fake: not a misassembly (possible transposable element) 105597082 105602263 121681 116503 NC_000014.9 scf287 99.73 True fake: not a misassembly (possible transposable element) 105903974 105904544 122252 121682 NC_000014.9 scf287 100.0 True relocation, inconsistency = -333421 106235284 106237394 124363 122253 NC_000014.9 scf287 99.86 True relocation, inconsistency = 639951 105594753 105595332 124943 124364 NC_000014.9 scf287 99.83 True relocation, inconsistency = -269191 105863276 105863943 125625 124944 NC_000014.9 scf287 97.36 True fake: not a misassembly (possible transposable element) 106233286 106234812 127152 125626 NC_000014.9 scf287 100.0 True fake: not a misassembly (possible transposable element) 105860251 105862570 129472 127153 NC_000014.9 scf287 99.96 True relocation, inconsistency = -371420 106229635 106230767 131508 130376 NC_000014.9 scf287 99.74 True fake: not a misassembly (possible transposable element) 105588063 105588618 132460 131905 NC_000014.9 scf287 99.64 True fake: not a misassembly (possible transposable element) 106221198 106229491 141779 132635 NC_000014.9 scf287 99.23 True fake: scaffold gap size wrong estimation (local) 106219007 106220433 144757 143331 NC_000014.9 scf287 99.72 True fake: scaffold gap size wrong estimation (local) 106211397 106219053 154095 145652 NC_000014.9 scf287 97.89 True fake: scaffold gap size wrong estimation (local) 106208991 106211038 157268 155221 NC_000014.9 scf287 99.71 True fake: scaffold gap size wrong estimation (local) 106207198 106209054 159959 158103 NC_000014.9 scf287 99.84 True local misassembly 106206539 106207069 160490 159960 NC_000014.9 scf287 99.81 True fake: scaffold gap size wrong estimation (local) 106203832 106206387 164397 161842 NC_000014.9 scf287 99.77 True fake: scaffold gap size wrong estimation (local) 106197183 106203620 171829 165392 NC_000014.9 scf287 99.86 True fake: scaffold gap size wrong estimation (local) 106195738 106196338 174172 173572 NC_000014.9 scf287 100.0 True indel: indel (> 5bp) 106194940 106195657 174890 174173 NC_000014.9 scf287 99.58 True fake: scaffold gap size wrong estimation (local) 106192574 106193321 178224 177477 NC_000014.9 scf287 99.87 True CONTIG scf287 178283 misassembled 21895071 21896455 1494 110 NC_000014.9 scf288 99.78 True local misassembly 21894259 21894801 2037 1495 NC_000014.9 scf288 100.0 True fake: scaffold gap size wrong estimation (local) 21883700 21893363 14592 3876 NC_000014.9 scf288 97.88 True fake: scaffold gap size wrong estimation (local) 21869635 21883484 30151 15548 NC_000014.9 scf288 99.65 True fake: scaffold gap size wrong estimation (local) 21864764 21869730 35855 30884 NC_000014.9 scf288 99.84 True fake: scaffold gap size wrong estimation (local) 21860728 21864839 40654 36543 NC_000014.9 scf288 99.9 True fake: scaffold gap size wrong estimation (local) 21858556 21860826 43576 41306 NC_000014.9 scf288 99.56 True fake: scaffold gap size wrong estimation (local) 21854734 21858650 48287 44348 NC_000014.9 scf288 99.29 True fake: scaffold gap size wrong estimation (local) 21853740 21854679 50840 49901 NC_000014.9 scf288 99.36 True fake: scaffold gap size wrong estimation (local) 21852287 21853800 53424 51911 NC_000014.9 scf288 99.67 True local misassembly 21850786 21851967 54606 53425 NC_000014.9 scf288 100.0 True fake: scaffold gap size wrong estimation (local) 21846469 21850884 59836 55457 NC_000014.9 scf288 98.85 True fake: scaffold gap size wrong estimation (local) 21838708 21846553 69628 60959 NC_000014.9 scf288 99.09 True fake: scaffold gap size wrong estimation (local) 21826700 21838765 83098 70341 NC_000014.9 scf288 98.54 True CONTIG scf288 86751 correct 49102650 49108827 1 6178 NC_000014.9 scf289 99.9 True fake: scaffold gap size wrong estimation (local) 49108740 49119595 6985 19278 NC_000014.9 scf289 98.88 True fake: scaffold gap size wrong estimation (local) 49119857 49126945 20287 27991 NC_000014.9 scf289 96.34 True fake: scaffold gap size wrong estimation (local) 49126847 49127929 29126 30208 NC_000014.9 scf289 99.91 True fake: scaffold gap size wrong estimation (local) 49129851 49130870 32734 33753 NC_000014.9 scf289 99.9 True fake: scaffold gap size wrong estimation (local) 49130772 49134784 35525 39534 NC_000014.9 scf289 99.83 True fake: scaffold gap size wrong estimation (local) 49134692 49144083 40241 49632 NC_000014.9 scf289 99.87 True CONTIG scf289 49632 correct 24482719 24486106 4422 1 NC_000014.9 scf290 99.12 True fake: scaffold gap size wrong estimation (local) 24480600 24482789 7386 5197 NC_000014.9 scf290 99.22 True fake: scaffold gap size wrong estimation (local) 24473725 24480696 15068 8102 NC_000014.9 scf290 98.98 True fake: scaffold gap size wrong estimation (local) 24471124 24473629 18576 16070 NC_000014.9 scf290 98.6 True fake: scaffold gap size wrong estimation (local) 24465156 24470608 25292 19839 NC_000014.9 scf290 99.54 True fake: scaffold gap size wrong estimation (local) 24462797 24465178 28454 26078 NC_000014.9 scf290 98.99 True fake: scaffold gap size wrong estimation (local) 24453237 24462394 38789 29624 NC_000014.9 scf290 99.35 True CONTIG scf290 38789 correct 59446210 59446754 557 13 NC_000014.9 scf291 100.0 True fake: scaffold gap size wrong estimation (local) 59445365 59445973 1462 839 NC_000014.9 scf291 97.44 True fake: scaffold gap size wrong estimation (local) 59440376 59444697 8144 2928 NC_000014.9 scf291 99.45 True fake: scaffold gap size wrong estimation (local) 59436414 59440457 12937 8894 NC_000014.9 scf291 99.8 True fake: scaffold gap size wrong estimation (local) 59433803 59436513 16327 13617 NC_000014.9 scf291 99.93 True fake: scaffold gap size wrong estimation (local) 59432112 59433103 18799 17808 NC_000014.9 scf291 99.7 True local misassembly 59430847 59431967 19920 18800 NC_000014.9 scf291 100.0 True fake: scaffold gap size wrong estimation (local) 59429567 59430628 22278 21217 NC_000014.9 scf291 99.81 True local misassembly 59428097 59429242 23424 22279 NC_000014.9 scf291 99.83 True fake: scaffold gap size wrong estimation (local) 59419075 59428194 33434 24319 NC_000014.9 scf291 99.81 True fake: scaffold gap size wrong estimation (local) 59418217 59418989 35074 34302 NC_000014.9 scf291 99.74 True indel: indel (<= 5bp) 59417360 59418214 35929 35075 NC_000014.9 scf291 99.77 True local misassembly 59415393 59416985 37522 35930 NC_000014.9 scf291 99.81 True CONTIG scf291 37522 correct 19193866 19203563 1 9744 NC_000014.9 scf292 99.39 True fake: scaffold gap size wrong estimation (local) 19203470 19205196 10482 12208 NC_000014.9 scf292 99.88 True local misassembly 19205369 19206798 12209 13638 NC_000014.9 scf292 99.86 True fake: scaffold gap size wrong estimation (local) 19206702 19212672 14323 21623 NC_000014.9 scf292 97.74 True fake: scaffold gap size wrong estimation (local) 19212578 19216756 22459 26636 NC_000014.9 scf292 99.66 True fake: scaffold gap size wrong estimation (local) 19216870 19223454 27538 34120 NC_000014.9 scf292 99.85 True CONTIG scf292 34120 correct 104498131 104498813 683 1 NC_000014.9 scf293 98.1 True fake: scaffold gap size wrong estimation (local) 104484754 104498017 16411 1657 NC_000014.9 scf293 99.22 True fake: scaffold gap size wrong estimation (local) 104482297 104484619 19697 17375 NC_000014.9 scf293 99.96 True fake: scaffold gap size wrong estimation (local) 104476997 104482358 25782 20421 NC_000014.9 scf293 99.89 True fake: scaffold gap size wrong estimation (local) 104464567 104476761 39791 26763 NC_000014.9 scf293 99.76 True fake: scaffold gap size wrong estimation (local) 104461657 104464451 43485 40691 NC_000014.9 scf293 100.0 True fake: scaffold gap size wrong estimation (local) 104455962 104461542 51153 44768 NC_000014.9 scf293 99.45 True fake: scaffold gap size wrong estimation (local) 104444262 104455995 63588 51855 NC_000014.9 scf293 99.99 True fake: scaffold gap size wrong estimation (local) 104440168 104444294 70109 65983 NC_000014.9 scf293 99.98 True fake: scaffold gap size wrong estimation (local) 104431291 104440263 79757 70785 NC_000014.9 scf293 99.99 True fake: scaffold gap size wrong estimation (local) 104427993 104429867 83748 81874 NC_000014.9 scf293 97.87 True fake: scaffold gap size wrong estimation (local) 104426710 104427992 85821 84539 NC_000014.9 scf293 100.0 True fake: scaffold gap size wrong estimation (local) 104416135 104426808 97600 86927 NC_000014.9 scf293 100.0 True CONTIG scf293 97600 correct 26679123 26688167 11 9061 NC_000014.9 scf294 99.66 True fake: scaffold gap size wrong estimation (local) 26689358 26693375 10932 14949 NC_000014.9 scf294 99.9 True fake: scaffold gap size wrong estimation (local) 26693556 26695869 15969 18213 NC_000014.9 scf294 96.89 True fake: scaffold gap size wrong estimation (local) 26696422 26703719 19493 26803 NC_000014.9 scf294 99.7 True CONTIG scf294 26806 correct 39653221 39656153 5956 3024 NC_000014.9 scf295 100.0 True fake: scaffold gap size wrong estimation (local) 39644563 39653315 15345 6595 NC_000014.9 scf295 99.93 True fake: scaffold gap size wrong estimation (local) 39639047 39644662 22049 16390 NC_000014.9 scf295 99.13 True fake: scaffold gap size wrong estimation (local) 39638436 39639136 23381 22665 NC_000014.9 scf295 97.63 True CONTIG scf295 23381 correct 38969220 38976515 1 7160 NC_000014.9 scf296 98.09 True fake: scaffold gap size wrong estimation (local) 38976864 38978563 8371 10070 NC_000014.9 scf296 99.94 True fake: scaffold gap size wrong estimation (local) 38979204 38985253 11275 17354 NC_000014.9 scf296 99.36 True fake: scaffold gap size wrong estimation (local) 38986423 38994071 19165 27641 NC_000014.9 scf296 98.9 True fake: scaffold gap size wrong estimation (local) 38993972 38997728 28307 32064 NC_000014.9 scf296 99.92 True fake: scaffold gap size wrong estimation (local) 38997934 39000830 33061 35956 NC_000014.9 scf296 99.93 True fake: scaffold gap size wrong estimation (local) 39000738 39009473 36658 45389 NC_000014.9 scf296 99.93 True fake: scaffold gap size wrong estimation (local) 39009375 39012873 46029 49531 NC_000014.9 scf296 99.8 True fake: scaffold gap size wrong estimation (local) 39012990 39017722 50420 55152 NC_000014.9 scf296 99.81 True CONTIG scf296 55152 correct 25189274 25198149 1 8891 NC_000014.9 scf297 99.55 True fake: scaffold gap size wrong estimation (local) 25198064 25199652 9628 11216 NC_000014.9 scf297 99.87 True fake: scaffold gap size wrong estimation (local) 25200687 25204353 13289 16990 NC_000014.9 scf297 98.97 True CONTIG scf297 16990 correct 48574820 48575915 3126 4221 NC_000014.9 scf298 99.73 True fake: scaffold gap size wrong estimation (local) 48575816 48584528 5460 14166 NC_000014.9 scf298 99.8 True fake: scaffold gap size wrong estimation (local) 48584610 48590486 15035 20929 NC_000014.9 scf298 99.59 True CONTIG scf298 20929 correct 46166805 46179004 13005 1 NC_000014.9 scf299 99.6 True CONTIG scf299 13005 correct 59894124 59896429 1 2306 NC_000014.9 scf300 99.78 True fake: scaffold gap size wrong estimation (local) 59896330 59900113 3078 6861 NC_000014.9 scf300 99.89 True fake: scaffold gap size wrong estimation (local) 59900277 59904809 7753 12285 NC_000014.9 scf300 100.0 True fake: scaffold gap size wrong estimation (local) 59904714 59908562 12933 16801 NC_000014.9 scf300 99.38 True fake: scaffold gap size wrong estimation (local) 59908477 59908983 17511 18017 NC_000014.9 scf300 100.0 True local misassembly 59909463 59910123 18355 19015 NC_000014.9 scf300 99.85 True fake: scaffold gap size wrong estimation (local) 59910026 59914000 19800 23774 NC_000014.9 scf300 99.92 True fake: scaffold gap size wrong estimation (local) 59914589 59921736 25181 32328 NC_000014.9 scf300 99.96 True fake: scaffold gap size wrong estimation (local) 59921847 59923800 33376 35329 NC_000014.9 scf300 100.0 True fake: scaffold gap size wrong estimation (local) 59923707 59933423 36799 46572 NC_000014.9 scf300 99.35 True fake: scaffold gap size wrong estimation (local) 59933332 59938860 47278 53647 NC_000014.9 scf300 99.33 True fake: scaffold gap size wrong estimation (local) 59939021 59944966 54527 60472 NC_000014.9 scf300 99.9 True fake: scaffold gap size wrong estimation (local) 59944880 59946610 61130 62860 NC_000014.9 scf300 99.88 True CONTIG scf300 62860 correct 44550092 44551517 1426 1 NC_000014.9 scf301 99.79 True fake: scaffold gap size wrong estimation (local) 44549474 44550183 3149 2440 NC_000014.9 scf301 99.44 True local misassembly 44547457 44549160 4921 3218 NC_000014.9 scf301 99.94 True fake: scaffold gap size wrong estimation (local) 44542305 44547528 10866 5643 NC_000014.9 scf301 100.0 True fake: scaffold gap size wrong estimation (local) 44525929 44541605 30688 12376 NC_000014.9 scf301 99.29 True indel: indel (> 5bp) 44523767 44525886 32802 30689 NC_000014.9 scf301 99.59 True fake: scaffold gap size wrong estimation (local) 44515311 44523863 42009 33446 NC_000014.9 scf301 99.71 True fake: scaffold gap size wrong estimation (local) 44514007 44514735 43935 43207 NC_000014.9 scf301 99.86 True fake: scaffold gap size wrong estimation (local) 44511273 44511908 47360 46725 NC_000014.9 scf301 99.84 True CONTIG scf301 47362 correct 34350819 34364844 1 15648 NC_000014.9 scf302 99.86 True fake: scaffold gap size wrong estimation (local) 34364850 34366468 16600 18218 NC_000014.9 scf302 99.81 True fake: scaffold gap size wrong estimation (local) 34367071 34370267 19676 22896 NC_000014.9 scf302 99.1 True fake: scaffold gap size wrong estimation (local) 34370171 34371842 23587 25193 NC_000014.9 scf302 95.66 True fake: scaffold gap size wrong estimation (local) 34372316 34374118 26505 28301 NC_000014.9 scf302 99.28 True fake: scaffold gap size wrong estimation (local) 34374021 34379194 28950 34123 NC_000014.9 scf302 99.9 True fake: scaffold gap size wrong estimation (local) 34379104 34385424 34843 41964 NC_000014.9 scf302 99.82 True fake: scaffold gap size wrong estimation (local) 34386494 34389407 43763 46676 NC_000014.9 scf302 99.83 True fake: scaffold gap size wrong estimation (local) 34389333 34390760 47479 48906 NC_000014.9 scf302 99.93 True fake: scaffold gap size wrong estimation (local) 34390842 34392713 49953 51891 NC_000014.9 scf302 95.94 True fake: scaffold gap size wrong estimation (local) 34393905 34395665 53937 55939 NC_000014.9 scf302 95.87 True fake: scaffold gap size wrong estimation (local) 34398800 34401134 60725 63059 NC_000014.9 scf302 100.0 True fake: scaffold gap size wrong estimation (local) 34401241 34403196 63968 65923 NC_000014.9 scf302 100.0 True fake: scaffold gap size wrong estimation (local) 34403102 34411435 66759 75088 NC_000014.9 scf302 99.95 True fake: scaffold gap size wrong estimation (local) 34413356 34414040 77602 78286 NC_000014.9 scf302 100.0 True CONTIG scf302 78286 correct 18538281 18538914 2879 3512 NC_000014.9 scf303 100.0 True fake: scaffold gap size wrong estimation (local) 18540042 18542092 5553 7603 NC_000014.9 scf303 99.85 True fake: scaffold gap size wrong estimation (local) 18543511 18545095 10160 11792 NC_000014.9 scf303 96.94 True fake: scaffold gap size wrong estimation (local) 18545065 18559215 12690 27647 NC_000014.9 scf303 98.61 True fake: scaffold gap size wrong estimation (local) 18559121 18560647 28419 29945 NC_000014.9 scf303 100.0 True fake: scaffold gap size wrong estimation (local) 18561200 18564775 31570 36861 NC_000014.9 scf303 99.77 True fake: scaffold gap size wrong estimation (local) 18564676 18567938 37599 40873 NC_000014.9 scf303 99.36 True CONTIG scf303 43190 correct 53312154 53318268 7082 1 NC_000014.9 scf304 98.8 True fake: scaffold gap size wrong estimation (local) 53303480 53312215 16892 8109 NC_000014.9 scf304 99.32 True CONTIG scf304 16892 correct 85891653 85902865 1 12738 NC_000014.9 scf305 99.32 True fake: scaffold gap size wrong estimation (local) 85903626 85904455 13527 14356 NC_000014.9 scf305 100.0 True fake: scaffold gap size wrong estimation (local) 85904675 85908025 15370 18720 NC_000014.9 scf305 100.0 True fake: scaffold gap size wrong estimation (local) 85907942 85916267 19362 28322 NC_000014.9 scf305 97.07 True fake: scaffold gap size wrong estimation (local) 85916171 85920255 29018 33107 NC_000014.9 scf305 99.76 True fake: scaffold gap size wrong estimation (local) 85920401 85926834 34064 40496 NC_000014.9 scf305 99.84 True fake: scaffold gap size wrong estimation (local) 85926751 85932744 41081 48005 NC_000014.9 scf305 99.73 True fake: scaffold gap size wrong estimation (local) 85932663 85936031 48685 52053 NC_000014.9 scf305 99.79 True fake: scaffold gap size wrong estimation (local) 85935958 85937560 52805 54406 NC_000014.9 scf305 99.81 True CONTIG scf305 54423 correct 60890099 60898199 1 8091 NC_000014.9 scf306 99.79 True fake: scaffold gap size wrong estimation (local) 60898113 60901093 8740 11722 NC_000014.9 scf306 99.53 True fake: scaffold gap size wrong estimation (local) 60901023 60903900 12453 15331 NC_000014.9 scf306 99.76 True fake: scaffold gap size wrong estimation (local) 60904055 60908568 16326 20747 NC_000014.9 scf306 96.17 True CONTIG scf306 20747 correct 31789056 31793840 4599 12 NC_000014.9 scf307 95.68 True fake: scaffold gap size wrong estimation (local) 31779270 31789140 16180 5379 NC_000014.9 scf307 99.12 True fake: scaffold gap size wrong estimation (local) 31775108 31779369 21272 17011 NC_000014.9 scf307 99.86 True fake: scaffold gap size wrong estimation (local) 31757453 31775201 41373 21994 NC_000014.9 scf307 99.25 True CONTIG scf307 41380 correct 52163515 52174377 2221 14566 NC_000014.9 scf308 97.99 True fake: scaffold gap size wrong estimation (local) 52174281 52191170 15301 34582 NC_000014.9 scf308 98.2 True fake: scaffold gap size wrong estimation (local) 52191086 52195869 35230 40021 NC_000014.9 scf308 99.06 True fake: scaffold gap size wrong estimation (local) 52195773 52199790 40686 44703 NC_000014.9 scf308 99.5 True fake: scaffold gap size wrong estimation (local) 52200394 52201049 46101 46756 NC_000014.9 scf308 98.93 True CONTIG scf308 46757 correct 37299474 37300377 1 904 NC_000014.9 scf309 99.67 True fake: scaffold gap size wrong estimation (local) 37302042 37322785 2865 25191 NC_000014.9 scf309 98.91 True fake: scaffold gap size wrong estimation (local) 37323358 37328033 26449 31124 NC_000014.9 scf309 99.68 True fake: scaffold gap size wrong estimation (local) 37328149 37331916 32008 35779 NC_000014.9 scf309 99.68 True fake: scaffold gap size wrong estimation (local) 37331824 37340707 36465 46803 NC_000014.9 scf309 98.29 True fake: scaffold gap size wrong estimation (local) 37340611 37342127 47875 49391 NC_000014.9 scf309 99.8 True fake: scaffold gap size wrong estimation (local) 37342929 37345015 51030 53116 NC_000014.9 scf309 98.08 True indel: indel (<= 5bp) 37345261 37348836 53360 56935 NC_000014.9 scf309 99.86 True fake: scaffold gap size wrong estimation (local) 37348985 37351004 57839 59858 NC_000014.9 scf309 99.8 True CONTIG scf309 59858 correct 56662797 56667581 4790 1 NC_000014.9 scf310 99.48 True fake: scaffold gap size wrong estimation (local) 56658978 56662894 9333 5417 NC_000014.9 scf310 99.95 True fake: scaffold gap size wrong estimation (local) 56656018 56658633 13098 10484 NC_000014.9 scf310 99.69 True fake: scaffold gap size wrong estimation (local) 56655258 56656081 14921 14098 NC_000014.9 scf310 100.0 True fake: scaffold gap size wrong estimation (local) 56645568 56654629 25617 15236 NC_000014.9 scf310 99.3 True CONTIG scf310 25624 correct 59952427 59953449 1 1023 NC_000014.9 scf311 99.9 True local misassembly 59954103 59954846 1080 1823 NC_000014.9 scf311 99.87 True fake: scaffold gap size wrong estimation (local) 59955133 59955666 3629 4162 NC_000014.9 scf311 100.0 True local misassembly 59956029 59956685 4163 4819 NC_000014.9 scf311 100.0 True fake: scaffold gap size wrong estimation (local) 59956918 59971591 6132 22381 NC_000014.9 scf311 99.71 True fake: scaffold gap size wrong estimation (local) 59971493 59975038 23001 26546 NC_000014.9 scf311 99.8 True fake: scaffold gap size wrong estimation (local) 59975170 59979468 27395 31689 NC_000014.9 scf311 99.7 True fake: scaffold gap size wrong estimation (local) 59979883 59991878 32888 45898 NC_000014.9 scf311 99.56 True CONTIG scf311 45898 correct 106643979 106651195 3363 11589 NC_000014.9 scf312 98.1 True fake: scaffold gap size wrong estimation (local) 106651394 106661761 12535 23500 NC_000014.9 scf312 97.32 True fake: scaffold gap size wrong estimation (local) 106661678 106664031 24261 26614 NC_000014.9 scf312 100.0 True fake: scaffold gap size wrong estimation (local) 106664209 106666381 27662 29847 NC_000014.9 scf312 99.41 True fake: scaffold gap size wrong estimation (local) 106666295 106668696 30623 33024 NC_000014.9 scf312 99.92 True fake: scaffold gap size wrong estimation (local) 106668614 106671502 33744 36630 NC_000014.9 scf312 99.83 True fake: scaffold gap size wrong estimation (local) 106671310 106672771 38020 39507 NC_000014.9 scf312 98.19 True relocation, scaffold gap is present, inconsistency = -265465 106409577 106422998 41778 56214 NC_000014.9 scf312 95.57 True fake: scaffold gap size wrong estimation (local) 106423334 106427323 57326 61317 NC_000014.9 scf312 99.77 True CONTIG scf312 61317 misassembled 91436731 91441344 1 4614 NC_000014.9 scf313 99.91 True fake: scaffold gap size wrong estimation (local) 91441573 91448424 5700 13318 NC_000014.9 scf313 99.71 True fake: scaffold gap size wrong estimation (local) 91448803 91450220 14657 16103 NC_000014.9 scf313 97.52 True fake: scaffold gap size wrong estimation (local) 91450804 91452370 18191 19757 NC_000014.9 scf313 99.94 True fake: scaffold gap size wrong estimation (local) 91452285 91459459 20543 27744 NC_000014.9 scf313 99.38 True fake: scaffold gap size wrong estimation (local) 91459361 91462074 28435 31093 NC_000014.9 scf313 97.32 True fake: scaffold gap size wrong estimation (local) 91461977 91465093 31764 34879 NC_000014.9 scf313 99.78 True fake: scaffold gap size wrong estimation (local) 91465031 91468369 35563 38901 NC_000014.9 scf313 99.97 True fake: scaffold gap size wrong estimation (local) 91469745 91472079 41045 43379 NC_000014.9 scf313 99.96 True fake: scaffold gap size wrong estimation (local) 91472465 91475579 45201 48558 NC_000014.9 scf313 95.52 True fake: scaffold gap size wrong estimation (local) 91475492 91479244 49105 53063 NC_000014.9 scf313 97.66 True fake: scaffold gap size wrong estimation (local) 91479148 91488936 53709 64287 NC_000014.9 scf313 99.72 True fake: scaffold gap size wrong estimation (local) 91489098 91490916 65363 67181 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91490917 91493773 67993 70849 NC_000014.9 scf313 99.96 True indel: indel (<= 5bp) 91493775 91494699 70850 71774 NC_000014.9 scf313 99.57 True indel: indel (> 5bp) 91494700 91495394 71799 72493 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91495325 91495938 72965 73578 NC_000014.9 scf313 100.0 True local misassembly 91495939 91497360 73753 75174 NC_000014.9 scf313 99.93 True indel: indel (> 5bp) 91497361 91498747 75187 76573 NC_000014.9 scf313 99.86 True fake: scaffold gap size wrong estimation (local) 91498915 91501265 77417 79825 NC_000014.9 scf313 97.42 True fake: scaffold gap size wrong estimation (local) 91501167 91501836 81118 81787 NC_000014.9 scf313 100.0 True local misassembly 91502337 91503698 81788 83149 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91504018 91506487 85328 87798 NC_000014.9 scf313 99.68 True fake: scaffold gap size wrong estimation (local) 91507117 91512903 89211 95866 NC_000014.9 scf313 99.9 True fake: scaffold gap size wrong estimation (local) 91513158 91517446 97177 101558 NC_000014.9 scf313 97.79 True fake: scaffold gap size wrong estimation (local) 91517814 91519139 102741 104066 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91519140 91520415 105134 106409 NC_000014.9 scf313 99.92 True local misassembly 91520701 91522541 106410 108250 NC_000014.9 scf313 99.95 True fake: scaffold gap size wrong estimation (local) 91522445 91523048 109018 109621 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91523368 91524493 109884 111009 NC_000014.9 scf313 99.91 True fake: scaffold gap size wrong estimation (local) 91524604 91529079 111968 116442 NC_000014.9 scf313 99.93 True fake: scaffold gap size wrong estimation (local) 91529677 91532639 117763 122307 NC_000014.9 scf313 99.79 True fake: scaffold gap size wrong estimation (local) 91535095 91544545 124266 134893 NC_000014.9 scf313 98.34 True fake: scaffold gap size wrong estimation (local) 91544470 91546431 135562 137450 NC_000014.9 scf313 96.18 True fake: scaffold gap size wrong estimation (local) 91546334 91548582 138195 140463 NC_000014.9 scf313 99.07 True fake: scaffold gap size wrong estimation (local) 91548937 91549490 140931 141484 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91549661 91553622 142669 146630 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91553734 91556555 147519 150340 NC_000014.9 scf313 99.89 True fake: scaffold gap size wrong estimation (local) 91558333 91560086 152776 154516 NC_000014.9 scf313 97.85 True fake: scaffold gap size wrong estimation (local) 91560961 91562428 156264 157731 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91564707 91566079 160395 161767 NC_000014.9 scf313 99.85 True fake: scaffold gap size wrong estimation (local) 91566401 91567512 162227 163338 NC_000014.9 scf313 99.91 True fake: scaffold gap size wrong estimation (local) 91567417 91569546 164546 166675 NC_000014.9 scf313 99.86 True local misassembly 91570359 91571005 166676 167322 NC_000014.9 scf313 100.0 True fake: scaffold gap size wrong estimation (local) 91570906 91572340 168727 170161 NC_000014.9 scf313 99.93 True fake: scaffold gap size wrong estimation (local) 91572957 91573897 172048 172988 NC_000014.9 scf313 99.89 True local misassembly 91574512 91576274 172989 174751 NC_000014.9 scf313 99.77 True fake: scaffold gap size wrong estimation (local) 91576184 91578060 176125 178001 NC_000014.9 scf313 99.84 True fake: scaffold gap size wrong estimation (local) 91578651 91590802 179398 192230 NC_000014.9 scf313 97.86 True fake: scaffold gap size wrong estimation (local) 91590887 91594205 193054 196369 NC_000014.9 scf313 99.88 True fake: scaffold gap size wrong estimation (local) 91594391 91596395 197410 199413 NC_000014.9 scf313 99.65 True fake: scaffold gap size wrong estimation (local) 91597007 91598709 200894 202596 NC_000014.9 scf313 99.71 True fake: scaffold gap size wrong estimation (local) 91599385 91605951 204138 210705 NC_000014.9 scf313 99.82 True fake: scaffold gap size wrong estimation (local) 91606066 91611427 212464 217823 NC_000014.9 scf313 98.83 True fake: scaffold gap size wrong estimation (local) 91611972 91621245 219054 229015 NC_000014.9 scf313 99.31 True fake: scaffold gap size wrong estimation (local) 91621207 91622210 229829 230832 NC_000014.9 scf313 99.8 True indel: indel (<= 5bp) 91622211 91622893 230835 231517 NC_000014.9 scf313 99.85 True local misassembly 91623296 91624231 231727 232662 NC_000014.9 scf313 99.47 True fake: scaffold gap size wrong estimation (local) 91624476 91634732 233858 245621 NC_000014.9 scf313 98.44 True CONTIG scf313 245621 correct 71797415 71807471 11954 1 NC_000014.9 scf314 95.89 True fake: scaffold gap size wrong estimation (local) 71786098 71797266 26031 13230 NC_000014.9 scf314 97.03 True fake: scaffold gap size wrong estimation (local) 71771927 71786161 42347 26768 NC_000014.9 scf314 98.36 True fake: scaffold gap size wrong estimation (local) 71767297 71772004 48246 43510 NC_000014.9 scf314 99.35 True fake: scaffold gap size wrong estimation (local) 71765717 71767395 50649 48983 NC_000014.9 scf314 99.17 True fake: scaffold gap size wrong estimation (local) 71761874 71765776 55259 51357 NC_000014.9 scf314 99.9 True fake: scaffold gap size wrong estimation (local) 71760605 71761735 57358 56228 NC_000014.9 scf314 99.65 True local misassembly 71759371 71760499 58487 57359 NC_000014.9 scf314 96.46 True fake: scaffold gap size wrong estimation (local) 71757299 71759370 61430 59359 NC_000014.9 scf314 99.76 True indel: indel (<= 5bp) 71756732 71757298 62001 61435 NC_000014.9 scf314 99.82 True fake: scaffold gap size wrong estimation (local) 71751777 71756640 69191 63386 NC_000014.9 scf314 99.15 True fake: scaffold gap size wrong estimation (local) 71748833 71751872 72948 69909 NC_000014.9 scf314 99.93 True fake: scaffold gap size wrong estimation (local) 71745650 71748925 76783 73664 NC_000014.9 scf314 95.14 True fake: scaffold gap size wrong estimation (local) 71738162 71745538 85122 77724 NC_000014.9 scf314 99.57 True fake: scaffold gap size wrong estimation (local) 71736201 71738209 87852 85846 NC_000014.9 scf314 99.9 True fake: scaffold gap size wrong estimation (local) 71732932 71736293 91936 88575 NC_000014.9 scf314 100.0 True fake: scaffold gap size wrong estimation (local) 71729225 71733023 96407 92609 NC_000014.9 scf314 99.95 True fake: scaffold gap size wrong estimation (local) 71722986 71728987 103394 97393 NC_000014.9 scf314 99.95 True fake: scaffold gap size wrong estimation (local) 71717150 71722814 109992 104328 NC_000014.9 scf314 99.98 True fake: scaffold gap size wrong estimation (local) 71710808 71717249 117095 110642 NC_000014.9 scf314 99.78 True fake: scaffold gap size wrong estimation (local) 71708030 71710634 120697 118093 NC_000014.9 scf314 99.96 True fake: scaffold gap size wrong estimation (local) 71707032 71708061 122422 121394 NC_000014.9 scf314 99.9 True fake: scaffold gap size wrong estimation (local) 71700741 71707110 129655 123309 NC_000014.9 scf314 99.62 True fake: scaffold gap size wrong estimation (local) 71686546 71700836 144624 130308 NC_000014.9 scf314 99.8 True fake: scaffold gap size wrong estimation (local) 71680601 71686645 151311 145267 NC_000014.9 scf314 99.97 True CONTIG scf314 151311 correct 106630219 106630940 1233 1954 NC_000014.9 scf315 100.0 True fake: scaffold gap size wrong estimation (local) 106630887 106638390 2684 10187 NC_000014.9 scf315 99.99 True fake: scaffold gap size wrong estimation (local) 106638340 106639022 10888 11570 NC_000014.9 scf315 100.0 True CONTIG scf315 11570 correct 46011518 46012611 4649 3556 NC_000014.9 scf316 99.63 True fake: scaffold gap size wrong estimation (local) 46002339 46011044 14903 5238 NC_000014.9 scf316 99.39 True fake: scaffold gap size wrong estimation (local) 45998299 45999913 19363 17749 NC_000014.9 scf316 99.81 True local misassembly 45996749 45997615 20230 19364 NC_000014.9 scf316 99.65 True fake: scaffold gap size wrong estimation (local) 45994892 45996332 23329 21889 NC_000014.9 scf316 99.79 True local misassembly 45993310 45994261 24281 23330 NC_000014.9 scf316 99.79 True CONTIG scf316 24281 correct 104840224 104848578 2263 11409 NC_000014.9 scf317 98.4 True fake: scaffold gap size wrong estimation (local) 104848742 104850096 11597 12949 NC_000014.9 scf317 99.48 True fake: scaffold gap size wrong estimation (local) 104850532 104851094 15135 15697 NC_000014.9 scf317 99.64 True local misassembly 104852128 104852694 15698 16264 NC_000014.9 scf317 99.82 True fake: scaffold gap size wrong estimation (local) 104852870 104854353 18380 19863 NC_000014.9 scf317 99.87 True fake: scaffold gap size wrong estimation (local) 104855433 104858462 21803 24853 NC_000014.9 scf317 98.76 True CONTIG scf317 24864 correct 101700742 101702329 1 1588 NC_000014.9 scf318 100.0 True fake: scaffold gap size wrong estimation (local) 101702899 101711987 2956 12851 NC_000014.9 scf318 99.82 True fake: scaffold gap size wrong estimation (local) 101713473 101716424 15021 17969 NC_000014.9 scf318 99.8 True fake: scaffold gap size wrong estimation (local) 101716352 101718991 18682 21322 NC_000014.9 scf318 99.89 True fake: scaffold gap size wrong estimation (local) 101719173 101720995 22482 24304 NC_000014.9 scf318 99.89 True fake: scaffold gap size wrong estimation (local) 101721657 101723033 25930 27306 NC_000014.9 scf318 100.0 True CONTIG scf318 27306 correct 106594580 106595172 1 593 NC_000014.9 scf319 99.49 True fake: not a misassembly (possible transposable element) 106364483 106365790 1734 3041 NC_000014.9 scf319 99.77 True fake: not a misassembly (possible transposable element) 106596909 106599019 3042 5152 NC_000014.9 scf319 99.67 True local misassembly 106599052 106600317 6174 7439 NC_000014.9 scf319 99.45 True fake: scaffold gap size wrong estimation (local) 106600865 106601590 8198 8923 NC_000014.9 scf319 98.9 True local misassembly 106602063 106602580 9951 10468 NC_000014.9 scf319 100.0 True fake: not a misassembly (possible transposable element) 106371434 106372496 11992 13054 NC_000014.9 scf319 100.0 True fake: not a misassembly (possible transposable element) 106605638 106606172 14835 15369 NC_000014.9 scf319 100.0 True fake: not a misassembly (possible transposable element) 106374136 106375933 15377 17174 NC_000014.9 scf319 99.89 True fake: not a misassembly (possible transposable element) 106607584 106608373 17175 17964 NC_000014.9 scf319 100.0 True relocation, scaffold gap is present, inconsistency = -232468 106376101 106383201 18160 25272 NC_000014.9 scf319 99.78 True fake: not a misassembly (possible transposable element) 106614251 106616619 25273 27641 NC_000014.9 scf319 100.0 True fake: not a misassembly (possible transposable element) 106384967 106385731 28460 29224 NC_000014.9 scf319 100.0 True relocation, inconsistency = 231614 106617346 106618622 29225 30501 NC_000014.9 scf319 100.0 True fake: scaffold gap size wrong estimation (local) 106619078 106623553 31808 36283 NC_000014.9 scf319 99.98 True fake: scaffold gap size wrong estimation (local) 106623455 106626515 36989 40049 NC_000014.9 scf319 99.97 True fake: scaffold gap size wrong estimation (local) 106626462 106627306 40857 41701 NC_000014.9 scf319 100.0 True relocation, inconsistency = -233114 106394193 106398113 41702 45642 NC_000014.9 scf319 99.42 True CONTIG scf319 45657 misassembled 79753616 79763372 1 11492 NC_000014.9 scf320 98.12 True fake: scaffold gap size wrong estimation (local) 79763276 79768144 12227 17109 NC_000014.9 scf320 99.49 True CONTIG scf320 17109 correct 39630992 39632139 1148 1 NC_000014.9 scf321 100.0 True fake: scaffold gap size wrong estimation (local) 39624770 39629308 8179 3645 NC_000014.9 scf321 99.69 True fake: scaffold gap size wrong estimation (local) 39617882 39624869 15848 8862 NC_000014.9 scf321 99.94 True fake: scaffold gap size wrong estimation (local) 39613209 39617930 21265 16544 NC_000014.9 scf321 99.98 True fake: scaffold gap size wrong estimation (local) 39611265 39613297 24043 22011 NC_000014.9 scf321 99.95 True fake: scaffold gap size wrong estimation (local) 39607373 39611361 28778 24790 NC_000014.9 scf321 100.0 True fake: scaffold gap size wrong estimation (local) 39605293 39607192 31635 29737 NC_000014.9 scf321 99.95 True fake: scaffold gap size wrong estimation (local) 39602530 39605387 35335 32478 NC_000014.9 scf321 100.0 True fake: scaffold gap size wrong estimation (local) 39601642 39602415 37081 36308 NC_000014.9 scf321 99.87 True fake: scaffold gap size wrong estimation (local) 39599628 39600507 39930 39051 NC_000014.9 scf321 99.89 True fake: scaffold gap size wrong estimation (local) 39597186 39599411 43685 41460 NC_000014.9 scf321 100.0 True fake: scaffold gap size wrong estimation (local) 39589857 39596305 51728 45292 NC_000014.9 scf321 97.47 True CONTIG scf321 53157 correct 52201048 52201825 1 778 NC_000014.9 scf322 99.61 True fake: scaffold gap size wrong estimation (local) 52201782 52209322 1567 9743 NC_000014.9 scf322 98.88 True CONTIG scf322 10245 correct 57118187 57131794 1 16089 NC_000014.9 scf323 98.7 True fake: scaffold gap size wrong estimation (local) 57131779 57132563 16311 17093 NC_000014.9 scf323 99.36 True fake: scaffold gap size wrong estimation (local) 57132897 57139008 18306 24454 NC_000014.9 scf323 99.32 True fake: scaffold gap size wrong estimation (local) 57138910 57145545 25086 31721 NC_000014.9 scf323 99.98 True CONTIG scf323 31721 correct 33102559 33111925 10038 1 NC_000014.9 scf324 97.88 True fake: scaffold gap size wrong estimation (local) 33094505 33102657 19697 10746 NC_000014.9 scf324 99.88 True fake: scaffold gap size wrong estimation (local) 33093616 33094188 20583 19992 NC_000014.9 scf324 96.79 True CONTIG scf324 20583 correct 24586536 24587151 1 616 NC_000014.9 scf325 99.84 True local misassembly 24587621 24589420 757 2644 NC_000014.9 scf325 98.85 True fake: scaffold gap size wrong estimation (local) 24589356 24593345 3418 7432 NC_000014.9 scf325 99.3 True fake: scaffold gap size wrong estimation (local) 24593274 24595050 8168 9892 NC_000014.9 scf325 95.91 True fake: scaffold gap size wrong estimation (local) 24594975 24598798 10590 14431 NC_000014.9 scf325 99.4 True fake: scaffold gap size wrong estimation (local) 24598727 24605632 15039 21943 NC_000014.9 scf325 99.93 True fake: scaffold gap size wrong estimation (local) 24605535 24610730 22696 28706 NC_000014.9 scf325 99.86 True fake: scaffold gap size wrong estimation (local) 24610830 24620309 29597 39796 NC_000014.9 scf325 98.82 True fake: scaffold gap size wrong estimation (local) 24620434 24628880 40820 49889 NC_000014.9 scf325 97.23 True CONTIG scf325 49889 correct 56009001 56014109 5109 1 NC_000014.9 scf326 100.0 True fake: scaffold gap size wrong estimation (local) 56007524 56009092 7338 5770 NC_000014.9 scf326 99.94 True fake: scaffold gap size wrong estimation (local) 55999878 56006720 15776 8934 NC_000014.9 scf326 100.0 True fake: scaffold gap size wrong estimation (local) 55999042 55999963 17845 16900 NC_000014.9 scf326 97.46 True fake: scaffold gap size wrong estimation (local) 55997133 55998243 19223 18113 NC_000014.9 scf326 100.0 True fake: scaffold gap size wrong estimation (local) 55993252 55994225 24293 23320 NC_000014.9 scf326 100.0 True CONTIG scf326 24293 correct 45347117 45349222 2106 1 NC_000014.9 scf327 100.0 True fake: scaffold gap size wrong estimation (local) 45337598 45346997 13327 3040 NC_000014.9 scf327 98.98 True fake: scaffold gap size wrong estimation (local) 45335417 45337693 16399 14123 NC_000014.9 scf327 99.65 True local misassembly 45333802 45335030 17628 16400 NC_000014.9 scf327 98.29 True fake: scaffold gap size wrong estimation (local) 45331457 45333801 20985 18641 NC_000014.9 scf327 98.42 True fake: scaffold gap size wrong estimation (local) 45329696 45331188 24136 22644 NC_000014.9 scf327 99.93 True fake: scaffold gap size wrong estimation (local) 45326473 45329688 28302 25072 NC_000014.9 scf327 99.41 True fake: scaffold gap size wrong estimation (local) 45325716 45326321 29881 29276 NC_000014.9 scf327 100.0 True CONTIG scf327 30511 correct 57622699 57624858 1 2160 NC_000014.9 scf328 99.54 True local misassembly 57625178 57625997 2161 2980 NC_000014.9 scf328 99.76 True fake: scaffold gap size wrong estimation (local) 57626424 57628195 4484 6258 NC_000014.9 scf328 99.83 True fake: scaffold gap size wrong estimation (local) 57628545 57635262 7356 14073 NC_000014.9 scf328 99.84 True fake: scaffold gap size wrong estimation (local) 57635165 57643748 14735 23318 NC_000014.9 scf328 100.0 True CONTIG scf328 23318 correct 20267165 20269018 1 1867 NC_000014.9 scf329 99.3 True fake: scaffold gap size wrong estimation (local) 20269164 20272546 2875 6257 NC_000014.9 scf329 99.85 True fake: scaffold gap size wrong estimation (local) 20272458 20280626 7096 16382 NC_000014.9 scf329 98.53 True CONTIG scf329 16384 correct 34756563 34757246 1 684 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34758495 34759198 1764 2467 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34759363 34762557 3366 6564 NC_000014.9 scf330 99.84 True fake: scaffold gap size wrong estimation (local) 34762464 34764308 7272 9117 NC_000014.9 scf330 99.89 True fake: scaffold gap size wrong estimation (local) 34764534 34770442 10112 16020 NC_000014.9 scf330 99.93 True fake: scaffold gap size wrong estimation (local) 34770375 34775070 16746 21440 NC_000014.9 scf330 99.89 True fake: scaffold gap size wrong estimation (local) 34774999 34784190 22152 32158 NC_000014.9 scf330 99.37 True fake: scaffold gap size wrong estimation (local) 34784697 34786635 34304 36275 NC_000014.9 scf330 98.28 True fake: scaffold gap size wrong estimation (local) 34787316 34788170 38067 38921 NC_000014.9 scf330 100.0 True local misassembly 34788561 34790168 38922 40529 NC_000014.9 scf330 99.94 True fake: scaffold gap size wrong estimation (local) 34790491 34793567 41678 44754 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34793868 34796254 45874 48260 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34796163 34797378 49601 50816 NC_000014.9 scf330 100.0 True local misassembly 34797662 34799106 50836 52280 NC_000014.9 scf330 99.72 True fake: scaffold gap size wrong estimation (local) 34799107 34801460 53241 55594 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34801878 34803188 56987 58297 NC_000014.9 scf330 99.85 True local misassembly 34803643 34804296 58468 59121 NC_000014.9 scf330 100.0 True fake: scaffold gap size wrong estimation (local) 34804198 34805410 60227 61439 NC_000014.9 scf330 100.0 True CONTIG scf330 62241 correct 31602408 31616155 1 17547 NC_000014.9 scf331 97.43 True fake: scaffold gap size wrong estimation (local) 31616711 31617440 19020 19749 NC_000014.9 scf331 100.0 True fake: scaffold gap size wrong estimation (local) 31618017 31624015 21645 27690 NC_000014.9 scf331 99.09 True fake: scaffold gap size wrong estimation (local) 31623921 31634326 28520 39883 NC_000014.9 scf331 95.9 True CONTIG scf331 39883 correct 106072119 106074667 3568 1023 NC_000014.9 scf332 97.49 True fake: scaffold gap size wrong estimation (local) 106067027 106072168 9449 4311 NC_000014.9 scf332 98.58 True fake: scaffold gap size wrong estimation (local) 106066204 106066909 11121 10416 NC_000014.9 scf332 99.58 True indel: indel (<= 5bp) 106064967 106066199 12354 11122 NC_000014.9 scf332 99.92 True local misassembly 106063839 106064766 13282 12355 NC_000014.9 scf332 99.89 True fake: scaffold gap size wrong estimation (local) 106062404 106063930 15842 14316 NC_000014.9 scf332 99.67 True fake: scaffold gap size wrong estimation (local) 106061095 106062162 18746 17679 NC_000014.9 scf332 99.72 True fake: scaffold gap size wrong estimation (local) 106057394 106059246 23304 21452 NC_000014.9 scf332 99.62 True fake: scaffold gap size wrong estimation (local) 106050753 106057183 30723 24289 NC_000014.9 scf332 99.67 True fake: scaffold gap size wrong estimation (local) 106044266 106050809 37941 31401 NC_000014.9 scf332 99.86 True fake: scaffold gap size wrong estimation (local) 106040179 106044322 42793 38650 NC_000014.9 scf332 99.98 True fake: scaffold gap size wrong estimation (local) 106034943 106040261 48844 43526 NC_000014.9 scf332 99.98 True fake: scaffold gap size wrong estimation (local) 106032126 106034854 52466 49738 NC_000014.9 scf332 99.89 True fake: scaffold gap size wrong estimation (local) 106030501 106031278 54881 54104 NC_000014.9 scf332 100.0 True fake: scaffold gap size wrong estimation (local) 106027637 106029877 58540 56383 NC_000014.9 scf332 96.3 True CONTIG scf332 58540 correct 44314744 44321799 1 7076 NC_000014.9 scf333 99.65 True CONTIG scf333 7086 correct 60040945 60041928 3012 3995 NC_000014.9 scf334 99.9 True fake: scaffold gap size wrong estimation (local) 60042283 60050120 5159 13175 NC_000014.9 scf334 98.68 True fake: scaffold gap size wrong estimation (local) 60050033 60053491 14076 17524 NC_000014.9 scf334 99.6 True fake: scaffold gap size wrong estimation (local) 60053396 60065264 18188 31570 NC_000014.9 scf334 99.17 True fake: scaffold gap size wrong estimation (local) 60065673 60074001 33038 42673 NC_000014.9 scf334 99.22 True fake: scaffold gap size wrong estimation (local) 60073908 60075783 43479 45286 NC_000014.9 scf334 96.16 True CONTIG scf334 48152 correct 18575687 18585171 10251 1 NC_000014.9 scf335 99.75 True fake: scaffold gap size wrong estimation (local) 18573242 18575782 13475 10900 NC_000014.9 scf335 98.6 True fake: scaffold gap size wrong estimation (local) 18570466 18571249 17049 16266 NC_000014.9 scf335 100.0 True CONTIG scf335 17049 correct 44666500 44674780 9074 31 NC_000014.9 scf336 99.63 True fake: scaffold gap size wrong estimation (local) 44660051 44666590 16273 9854 NC_000014.9 scf336 98.09 True fake: scaffold gap size wrong estimation (local) 44651512 44660150 26530 16952 NC_000014.9 scf336 98.8 True fake: scaffold gap size wrong estimation (local) 44645216 44651608 33750 27358 NC_000014.9 scf336 99.98 True CONTIG scf336 33750 correct 70301401 70304874 3467 1 NC_000014.9 scf337 99.48 True fake: scaffold gap size wrong estimation (local) 70298959 70301270 6728 4418 NC_000014.9 scf337 99.7 True fake: scaffold gap size wrong estimation (local) 70296337 70297062 10296 9561 NC_000014.9 scf337 98.51 True fake: scaffold gap size wrong estimation (local) 70293832 70295995 13866 11649 NC_000014.9 scf337 95.4 True fake: scaffold gap size wrong estimation (local) 70271736 70293191 39759 15203 NC_000014.9 scf337 99.15 True fake: scaffold gap size wrong estimation (local) 70270826 70271826 41504 40504 NC_000014.9 scf337 99.9 True local misassembly 70267327 70270568 44836 41595 NC_000014.9 scf337 99.94 True fake: scaffold gap size wrong estimation (local) 70263637 70267425 49271 45458 NC_000014.9 scf337 99.24 True fake: scaffold gap size wrong estimation (local) 70261820 70263726 51813 49913 NC_000014.9 scf337 99.53 True fake: scaffold gap size wrong estimation (local) 70255558 70261910 58815 52461 NC_000014.9 scf337 99.72 True fake: scaffold gap size wrong estimation (local) 70255073 70255657 60300 59716 NC_000014.9 scf337 99.83 True fake: scaffold gap size wrong estimation (local) 70253771 70254793 61534 60512 NC_000014.9 scf337 99.51 True local misassembly 70252582 70253478 62431 61535 NC_000014.9 scf337 99.89 True fake: scaffold gap size wrong estimation (local) 70250156 70251294 65756 64618 NC_000014.9 scf337 99.91 True fake: scaffold gap size wrong estimation (local) 70248167 70248893 68795 68068 NC_000014.9 scf337 99.73 True CONTIG scf337 68810 correct 18683500 18695554 12874 1 NC_000014.9 scf338 97.77 True fake: scaffold gap size wrong estimation (local) 18681724 18682596 15518 14646 NC_000014.9 scf338 96.79 True local misassembly 18681015 18681583 16087 15519 NC_000014.9 scf338 99.82 True CONTIG scf338 16087 correct 25173821 25179971 1 6151 NC_000014.9 scf339 99.93 True fake: scaffold gap size wrong estimation (local) 25180100 25181202 7141 8243 NC_000014.9 scf339 99.82 True local misassembly 25181406 25183499 8244 10337 NC_000014.9 scf339 99.76 True fake: scaffold gap size wrong estimation (local) 25184482 25185018 12246 12782 NC_000014.9 scf339 99.26 True CONTIG scf339 12782 correct 38640844 38644628 1 3805 NC_000014.9 scf340 99.42 True fake: scaffold gap size wrong estimation (local) 38644529 38672410 4503 33879 NC_000014.9 scf340 99.5 True CONTIG scf340 33879 correct 26320500 26321297 859 60 NC_000014.9 scf341 99.5 True fake: scaffold gap size wrong estimation (local) 26314601 26320584 7498 1515 NC_000014.9 scf341 99.87 True fake: scaffold gap size wrong estimation (local) 26311928 26314656 10915 8320 NC_000014.9 scf341 95.02 True fake: scaffold gap size wrong estimation (local) 26311282 26312027 12503 11758 NC_000014.9 scf341 100.0 True fake: scaffold gap size wrong estimation (local) 26309710 26310803 14004 12911 NC_000014.9 scf341 99.91 True fake: scaffold gap size wrong estimation (local) 26303468 26309451 21862 15879 NC_000014.9 scf341 99.73 True fake: scaffold gap size wrong estimation (local) 26300421 26303567 25685 22539 NC_000014.9 scf341 99.56 True CONTIG scf341 25689 correct 34297206 34297770 99 663 NC_000014.9 scf342 100.0 True local misassembly 34298165 34299900 851 2586 NC_000014.9 scf342 99.6 True fake: scaffold gap size wrong estimation (local) 34300088 34301493 3678 5083 NC_000014.9 scf342 99.72 True fake: scaffold gap size wrong estimation (local) 34301400 34302311 6031 6942 NC_000014.9 scf342 100.0 True indel: indel (<= 5bp) 34302312 34303496 6944 8128 NC_000014.9 scf342 99.83 True local misassembly 34303949 34304793 8129 8973 NC_000014.9 scf342 99.64 True fake: scaffold gap size wrong estimation (local) 34304733 34306155 10099 11522 NC_000014.9 scf342 99.86 True fake: scaffold gap size wrong estimation (local) 34306454 34308506 12799 14852 NC_000014.9 scf342 99.85 True fake: scaffold gap size wrong estimation (local) 34308426 34312836 15660 20070 NC_000014.9 scf342 99.91 True fake: scaffold gap size wrong estimation (local) 34312739 34317339 20772 25390 NC_000014.9 scf342 99.01 True fake: scaffold gap size wrong estimation (local) 34317250 34324171 26079 33749 NC_000014.9 scf342 98.94 True fake: scaffold gap size wrong estimation (local) 34324404 34325994 34953 36543 NC_000014.9 scf342 99.94 True local misassembly 34326725 34327472 36826 37573 NC_000014.9 scf342 99.87 True fake: scaffold gap size wrong estimation (local) 34327541 34333411 39754 45624 NC_000014.9 scf342 99.54 True fake: scaffold gap size wrong estimation (local) 34333556 34336939 46487 49870 NC_000014.9 scf342 99.97 True fake: scaffold gap size wrong estimation (local) 34337110 34338989 50857 52736 NC_000014.9 scf342 99.79 True fake: scaffold gap size wrong estimation (local) 34339756 34341572 54313 56129 NC_000014.9 scf342 100.0 True local misassembly 34341854 34342712 56283 57141 NC_000014.9 scf342 99.88 True fake: scaffold gap size wrong estimation (local) 34342620 34345435 57973 60760 NC_000014.9 scf342 98.06 True fake: scaffold gap size wrong estimation (local) 34345660 34348258 62210 64808 NC_000014.9 scf342 99.92 True CONTIG scf342 64808 correct 70939462 70940149 1 702 NC_000014.9 scf343 98.01 True fake: scaffold gap size wrong estimation (local) 70940624 70941264 2408 3048 NC_000014.9 scf343 100.0 True local misassembly 70941966 70943248 3315 4597 NC_000014.9 scf343 100.0 True fake: scaffold gap size wrong estimation (local) 70943249 70943788 5560 6099 NC_000014.9 scf343 100.0 True indel: indel (<= 5bp) 70943789 70945578 6101 7890 NC_000014.9 scf343 99.94 True fake: scaffold gap size wrong estimation (local) 70945910 70947534 9041 10665 NC_000014.9 scf343 99.94 True local misassembly 70947736 70949255 10666 12185 NC_000014.9 scf343 100.0 True fake: scaffold gap size wrong estimation (local) 70949175 70953683 13561 18907 NC_000014.9 scf343 96.03 True fake: scaffold gap size wrong estimation (local) 70953863 70959449 19845 25430 NC_000014.9 scf343 99.7 True CONTIG scf343 25560 correct 106194320 106194984 665 1 NC_000014.9 scf344 100.0 True fake: scaffold gap size wrong estimation (local) 106190933 106192213 4565 3285 NC_000014.9 scf344 99.84 True fake: scaffold gap size wrong estimation (local) 106184845 106191001 11501 5318 NC_000014.9 scf344 99.27 True fake: scaffold gap size wrong estimation (local) 106182917 106184933 14272 12256 NC_000014.9 scf344 99.95 True fake: scaffold gap size wrong estimation (local) 106180173 106182013 17727 15887 NC_000014.9 scf344 99.95 True fake: scaffold gap size wrong estimation (local) 106178416 106178975 20235 19676 NC_000014.9 scf344 100.0 True fake: scaffold gap size wrong estimation (local) 106170919 106178063 29069 20322 NC_000014.9 scf344 99.52 True fake: scaffold gap size wrong estimation (local) 106168787 106169744 31987 31030 NC_000014.9 scf344 99.79 True fake: scaffold gap size wrong estimation (local) 106165747 106168772 37573 34683 NC_000014.9 scf344 95.14 True fake: scaffold gap size wrong estimation (local) 106162248 106164256 41884 39876 NC_000014.9 scf344 99.85 True fake: scaffold gap size wrong estimation (local) 106159147 106160374 45532 44306 NC_000014.9 scf344 99.84 True fake: scaffold gap size wrong estimation (local) 106157050 106158859 49392 47583 NC_000014.9 scf344 99.34 True fake: scaffold gap size wrong estimation (local) 106154137 106156896 53133 50374 NC_000014.9 scf344 99.24 True fake: scaffold gap size wrong estimation (local) 106153350 106154232 54813 53931 NC_000014.9 scf344 99.55 True fake: scaffold gap size wrong estimation (local) 106147491 106153220 62866 57136 NC_000014.9 scf344 99.49 True fake: scaffold gap size wrong estimation (local) 106145178 106147306 65937 63809 NC_000014.9 scf344 99.91 True fake: scaffold gap size wrong estimation (local) 106142207 106144587 69699 67318 NC_000014.9 scf344 99.54 True fake: scaffold gap size wrong estimation (local) 106137288 106141904 76349 70879 NC_000014.9 scf344 98.88 True fake: scaffold gap size wrong estimation (local) 106134321 106135576 80007 78752 NC_000014.9 scf344 100.0 True fake: scaffold gap size wrong estimation (local) 106133290 106134411 82403 81282 NC_000014.9 scf344 100.0 True fake: scaffold gap size wrong estimation (local) 106129770 106133205 86980 83549 NC_000014.9 scf344 99.8 True fake: scaffold gap size wrong estimation (local) 106126726 106129825 90777 87678 NC_000014.9 scf344 99.74 True fake: scaffold gap size wrong estimation (local) 106122479 106126815 95834 91498 NC_000014.9 scf344 99.88 True fake: scaffold gap size wrong estimation (local) 106116622 106122572 102471 96598 NC_000014.9 scf344 97.97 True fake: scaffold gap size wrong estimation (local) 106115158 106116073 104728 103813 NC_000014.9 scf344 99.56 True local misassembly 106114083 106115062 105708 104729 NC_000014.9 scf344 98.88 True indel: indel (> 5bp) 106113203 106113714 106594 106083 NC_000014.9 scf344 96.88 True CONTIG scf344 114829 correct 56447903 56449414 1 1512 NC_000014.9 scf345 99.87 True fake: scaffold gap size wrong estimation (local) 56449320 56454937 2257 7874 NC_000014.9 scf345 99.91 True fake: scaffold gap size wrong estimation (local) 56454863 56455449 8677 9263 NC_000014.9 scf345 100.0 True fake: scaffold gap size wrong estimation (local) 56455916 56456553 9698 10350 NC_000014.9 scf345 97.4 True CONTIG scf345 10350 correct 40353993 40360311 1 7135 NC_000014.9 scf346 98.18 True fake: scaffold gap size wrong estimation (local) 40360217 40365780 7746 13309 NC_000014.9 scf346 99.95 True fake: scaffold gap size wrong estimation (local) 40365693 40372360 14025 21396 NC_000014.9 scf346 99.08 True fake: scaffold gap size wrong estimation (local) 40372212 40376441 22434 26692 NC_000014.9 scf346 98.97 True CONTIG scf346 26692 correct 66189937 66196254 1 7002 NC_000014.9 scf347 99.57 True fake: scaffold gap size wrong estimation (local) 66196160 66201570 7658 13068 NC_000014.9 scf347 100.0 True CONTIG scf347 13068 correct 71810969 71814023 1 3055 NC_000014.9 scf348 99.97 True fake: scaffold gap size wrong estimation (local) 71813927 71821780 3719 12435 NC_000014.9 scf348 99.56 True fake: scaffold gap size wrong estimation (local) 71821704 71824154 13203 15652 NC_000014.9 scf348 99.92 True fake: scaffold gap size wrong estimation (local) 71824136 71825749 16518 18131 NC_000014.9 scf348 100.0 True local misassembly 71826272 71827688 18396 19812 NC_000014.9 scf348 100.0 True fake: scaffold gap size wrong estimation (local) 71827689 71828469 20000 20780 NC_000014.9 scf348 100.0 True fake: scaffold gap size wrong estimation (local) 71828384 71829180 21279 22075 NC_000014.9 scf348 99.75 True fake: scaffold gap size wrong estimation (local) 71829181 71831481 22538 24838 NC_000014.9 scf348 99.87 True fake: scaffold gap size wrong estimation (local) 71832033 71834185 26136 28288 NC_000014.9 scf348 99.91 True local misassembly 71834443 71835278 28356 29191 NC_000014.9 scf348 100.0 True fake: scaffold gap size wrong estimation (local) 71835188 71839292 30277 34203 NC_000014.9 scf348 95.59 True fake: scaffold gap size wrong estimation (local) 71839193 71842686 34953 38461 NC_000014.9 scf348 99.23 True CONTIG scf348 39452 correct 18655970 18662552 1 7579 NC_000014.9 scf349 98.6 True CONTIG scf349 7588 correct 44676810 44683032 1 7056 NC_000014.9 scf350 98.59 True fake: scaffold gap size wrong estimation (local) 44684792 44685799 9391 10398 NC_000014.9 scf350 99.9 True fake: scaffold gap size wrong estimation (local) 44685700 44694623 11571 21290 NC_000014.9 scf350 99.24 True fake: scaffold gap size wrong estimation (local) 44695456 44696584 23198 24326 NC_000014.9 scf350 99.82 True fake: scaffold gap size wrong estimation (local) 44697980 44698748 26670 27438 NC_000014.9 scf350 99.74 True fake: scaffold gap size wrong estimation (local) 44699105 44702563 28524 31975 NC_000014.9 scf350 99.6 True fake: scaffold gap size wrong estimation (local) 44702465 44705150 32754 35438 NC_000014.9 scf350 99.93 True CONTIG scf350 35438 correct 34415027 34418986 1 3960 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34418893 34424253 4596 9956 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34424155 34428816 10631 15292 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34428755 34430870 16053 18168 NC_000014.9 scf351 99.95 True fake: scaffold gap size wrong estimation (local) 34430773 34443078 18826 32654 NC_000014.9 scf351 99.77 True fake: scaffold gap size wrong estimation (local) 34443726 34444622 34041 34937 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34444529 34447096 36683 39250 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34447210 34448094 39345 40227 NC_000014.9 scf351 99.77 True fake: scaffold gap size wrong estimation (local) 34448188 34451563 41131 44506 NC_000014.9 scf351 99.97 True fake: scaffold gap size wrong estimation (local) 34452238 34455583 45992 49337 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34456756 34458579 51361 53184 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34459568 34467528 55028 64236 NC_000014.9 scf351 99.54 True fake: scaffold gap size wrong estimation (local) 34467434 34469880 64938 67384 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34470640 34471545 68959 69864 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34472058 34474038 71326 73306 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34473955 34475425 74428 75898 NC_000014.9 scf351 99.93 True fake: scaffold gap size wrong estimation (local) 34476771 34477533 78086 78848 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34477664 34479103 79364 80816 NC_000014.9 scf351 99.11 True fake: scaffold gap size wrong estimation (local) 34479018 34480640 81731 83392 NC_000014.9 scf351 97.65 True local misassembly 34481019 34485323 83456 88509 NC_000014.9 scf351 97.39 True fake: scaffold gap size wrong estimation (local) 34485605 34486506 89686 90544 NC_000014.9 scf351 95.23 True fake: scaffold gap size wrong estimation (local) 34487570 34488827 92633 93890 NC_000014.9 scf351 100.0 True local misassembly 34489277 34490019 93891 94633 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34490210 34490835 96271 96896 NC_000014.9 scf351 100.0 True local misassembly 34491236 34491793 96897 97454 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34494046 34495501 100127 101582 NC_000014.9 scf351 99.93 True fake: scaffold gap size wrong estimation (local) 34495742 34498203 104048 106509 NC_000014.9 scf351 100.0 True fake: scaffold gap size wrong estimation (local) 34498664 34499400 107989 108725 NC_000014.9 scf351 100.0 True local misassembly 34499776 34500897 108726 109847 NC_000014.9 scf351 99.55 True fake: scaffold gap size wrong estimation (local) 34501081 34504044 111179 114167 NC_000014.9 scf351 99.13 True fake: scaffold gap size wrong estimation (local) 34504941 34506618 115807 117484 NC_000014.9 scf351 99.7 True fake: scaffold gap size wrong estimation (local) 34508529 34509238 120078 120787 NC_000014.9 scf351 97.32 True CONTIG scf351 120787 correct 71848907 71852997 1 4902 NC_000014.9 scf352 96.87 True fake: scaffold gap size wrong estimation (local) 71853128 71858517 5051 11246 NC_000014.9 scf352 98.35 True fake: scaffold gap size wrong estimation (local) 71858423 71861200 11958 14862 NC_000014.9 scf352 95.84 True fake: scaffold gap size wrong estimation (local) 71861102 71865712 15750 20357 NC_000014.9 scf352 98.28 True fake: scaffold gap size wrong estimation (local) 71865629 71867539 21135 23022 NC_000014.9 scf352 97.35 True fake: scaffold gap size wrong estimation (local) 71867444 71873126 23756 29458 NC_000014.9 scf352 99.53 True CONTIG scf352 29458 correct 34898970 34899569 600 1 NC_000014.9 scf353 99.83 True fake: scaffold gap size wrong estimation (local) 34897946 34898728 1530 732 NC_000014.9 scf353 97.87 True fake: scaffold gap size wrong estimation (local) 34893800 34897132 6444 3100 NC_000014.9 scf353 98.45 True fake: scaffold gap size wrong estimation (local) 34893127 34893898 8017 7244 NC_000014.9 scf353 99.74 True fake: scaffold gap size wrong estimation (local) 34889059 34892952 12084 8295 NC_000014.9 scf353 95.42 True fake: scaffold gap size wrong estimation (local) 34885342 34888921 16738 13129 NC_000014.9 scf353 99.09 True fake: scaffold gap size wrong estimation (local) 34880165 34885260 23753 17512 NC_000014.9 scf353 97.81 True fake: scaffold gap size wrong estimation (local) 34879281 34880264 26147 25164 NC_000014.9 scf353 99.39 True local misassembly 34877747 34878425 26991 26313 NC_000014.9 scf353 99.85 True fake: scaffold gap size wrong estimation (local) 34877248 34877845 29238 28641 NC_000014.9 scf353 100.0 True local misassembly 34873688 34876655 32344 29377 NC_000014.9 scf353 99.9 True fake: scaffold gap size wrong estimation (local) 34871682 34873779 35181 33120 NC_000014.9 scf353 96.69 True fake: scaffold gap size wrong estimation (local) 34867866 34871745 39880 35973 NC_000014.9 scf353 99.1 True fake: scaffold gap size wrong estimation (local) 34863281 34867958 45002 40535 NC_000014.9 scf353 95.4 True fake: scaffold gap size wrong estimation (local) 34860522 34863002 49037 46557 NC_000014.9 scf353 99.92 True fake: scaffold gap size wrong estimation (local) 34857209 34860400 53152 49963 NC_000014.9 scf353 99.94 True fake: scaffold gap size wrong estimation (local) 34854468 34856810 56690 54348 NC_000014.9 scf353 99.83 True fake: scaffold gap size wrong estimation (local) 34851898 34854554 60070 57414 NC_000014.9 scf353 97.48 True fake: scaffold gap size wrong estimation (local) 34850269 34851332 62662 61599 NC_000014.9 scf353 99.81 True local misassembly 34848457 34849935 64141 62663 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34845871 34848456 67584 64999 NC_000014.9 scf353 99.85 True fake: scaffold gap size wrong estimation (local) 34845232 34845870 68467 67829 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34844220 34844767 70142 69595 NC_000014.9 scf353 100.0 True local misassembly 34843035 34843919 71054 70170 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34841550 34843034 72766 71282 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34840594 34841594 74582 73582 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34836406 34839071 80518 75928 NC_000014.9 scf353 98.74 True fake: scaffold gap size wrong estimation (local) 34832370 34835813 85122 81679 NC_000014.9 scf353 99.83 True fake: scaffold gap size wrong estimation (local) 34829193 34832192 89028 86036 NC_000014.9 scf353 99.67 True fake: scaffold gap size wrong estimation (local) 34828294 34829249 90664 89705 NC_000014.9 scf353 99.38 True fake: scaffold gap size wrong estimation (local) 34827640 34828265 92945 92320 NC_000014.9 scf353 100.0 True local misassembly 34825878 34826975 94043 92946 NC_000014.9 scf353 100.0 True fake: scaffold gap size wrong estimation (local) 34822083 34825795 99416 95738 NC_000014.9 scf353 99.03 True fake: scaffold gap size wrong estimation (local) 34819144 34822171 103106 100059 NC_000014.9 scf353 99.63 True fake: scaffold gap size wrong estimation (local) 34816249 34818954 106744 104039 NC_000014.9 scf353 99.93 True fake: scaffold gap size wrong estimation (local) 34814043 34816100 109734 107677 NC_000014.9 scf353 99.9 True fake: scaffold gap size wrong estimation (local) 34808274 34813490 116232 111012 NC_000014.9 scf353 99.89 True CONTIG scf353 116232 correct 22667171 22672312 6946 1805 NC_000014.9 scf354 100.0 True fake: scaffold gap size wrong estimation (local) 22665086 22667269 9828 7645 NC_000014.9 scf354 99.77 True fake: scaffold gap size wrong estimation (local) 22650228 22665155 27204 10594 NC_000014.9 scf354 99.56 True fake: scaffold gap size wrong estimation (local) 22647987 22650141 30320 28168 NC_000014.9 scf354 99.72 True fake: scaffold gap size wrong estimation (local) 22643106 22647828 37570 32014 NC_000014.9 scf354 99.28 True fake: scaffold gap size wrong estimation (local) 22642440 22643027 38368 37781 NC_000014.9 scf354 100.0 True local misassembly 22641603 22642237 39003 38369 NC_000014.9 scf354 99.84 True CONTIG scf354 39810 correct 92858887 92867392 1 9310 NC_000014.9 scf355 99.71 True fake: scaffold gap size wrong estimation (local) 92867297 92868630 10121 11454 NC_000014.9 scf355 99.93 True CONTIG scf355 11454 correct CONTIG scf356 35910 unaligned 24005503 24006070 1 564 NC_000014.9 scf357 99.3 True fake: scaffold gap size wrong estimation (local) 24008049 24008648 3704 4303 NC_000014.9 scf357 99.83 True fake: scaffold gap size wrong estimation (local) 24009430 24009932 5083 5603 NC_000014.9 scf357 96.16 True fake: scaffold gap size wrong estimation (local) 24010314 24015235 6711 11633 NC_000014.9 scf357 99.88 True fake: scaffold gap size wrong estimation (local) 24015426 24016255 12673 13502 NC_000014.9 scf357 99.88 True fake: scaffold gap size wrong estimation (local) 24020452 24021545 20194 21320 NC_000014.9 scf357 95.47 True fake: scaffold gap size wrong estimation (local) 24023469 24024346 24216 25118 NC_000014.9 scf357 97.23 True CONTIG scf357 25118 correct 59402924 59403487 1 564 NC_000014.9 scf358 100.0 True fake: scaffold gap size wrong estimation (local) 59404960 59410375 2970 8440 NC_000014.9 scf358 98.89 True CONTIG scf358 9749 correct 60078864 60090016 1 11150 NC_000014.9 scf359 99.74 True fake: scaffold gap size wrong estimation (local) 60089919 60098869 11828 21552 NC_000014.9 scf359 99.52 True fake: scaffold gap size wrong estimation (local) 60098778 60104292 22247 28556 NC_000014.9 scf359 99.17 True fake: scaffold gap size wrong estimation (local) 60104194 60112992 29638 39466 NC_000014.9 scf359 99.22 True CONTIG scf359 40743 correct 31798794 31802463 3 3671 NC_000014.9 scf360 99.81 True fake: scaffold gap size wrong estimation (local) 31802394 31807020 4331 8957 NC_000014.9 scf360 99.89 True CONTIG scf360 8969 correct 87417433 87417890 1 545 NC_000014.9 scf361 100.0 True fake: scaffold gap size wrong estimation (local) 87418877 87423798 2387 7332 NC_000014.9 scf361 99.51 True CONTIG scf361 10024 correct 90212706 90214022 1 1317 NC_000014.9 scf362 100.0 True local misassembly 90214154 90214941 1318 2105 NC_000014.9 scf362 100.0 True fake: scaffold gap size wrong estimation (local) 90215196 90215763 3550 4117 NC_000014.9 scf362 100.0 True local misassembly 90216154 90217842 4118 5806 NC_000014.9 scf362 99.94 True local misassembly 90218093 90218905 5872 6684 NC_000014.9 scf362 99.75 True fake: scaffold gap size wrong estimation (local) 90218934 90219988 7709 8763 NC_000014.9 scf362 99.91 True local misassembly 90220233 90221605 8764 10136 NC_000014.9 scf362 99.93 True fake: scaffold gap size wrong estimation (local) 90221752 90222570 11259 12077 NC_000014.9 scf362 100.0 True local misassembly 90222775 90225314 12078 14617 NC_000014.9 scf362 99.84 True fake: scaffold gap size wrong estimation (local) 90225315 90226105 15512 16302 NC_000014.9 scf362 99.75 True indel: indel (> 5bp) 90226262 90226913 16387 17038 NC_000014.9 scf362 100.0 True local misassembly 90227149 90228474 17039 18364 NC_000014.9 scf362 99.92 True fake: scaffold gap size wrong estimation (local) 90228401 90233010 19086 23727 NC_000014.9 scf362 99.2 True fake: scaffold gap size wrong estimation (local) 90232916 90233942 24400 25426 NC_000014.9 scf362 100.0 True fake: scaffold gap size wrong estimation (local) 90233847 90238087 25915 31190 NC_000014.9 scf362 99.4 True fake: scaffold gap size wrong estimation (local) 90237989 90240494 31844 34346 NC_000014.9 scf362 99.64 True fake: scaffold gap size wrong estimation (local) 90240418 90241882 35207 36671 NC_000014.9 scf362 100.0 True local misassembly 90242099 90243037 36672 37610 NC_000014.9 scf362 99.79 True fake: scaffold gap size wrong estimation (local) 90243823 90245083 39378 40638 NC_000014.9 scf362 99.84 True fake: scaffold gap size wrong estimation (local) 90246858 90249228 42997 45363 NC_000014.9 scf362 99.75 True fake: scaffold gap size wrong estimation (local) 90249190 90250779 46180 47769 NC_000014.9 scf362 99.94 True fake: scaffold gap size wrong estimation (local) 90251014 90260559 48854 59840 NC_000014.9 scf362 97.76 True fake: scaffold gap size wrong estimation (local) 90260662 90261720 61917 62975 NC_000014.9 scf362 99.81 True local misassembly 90262320 90262824 63177 63681 NC_000014.9 scf362 99.6 True fake: scaffold gap size wrong estimation (local) 90262752 90267190 64716 70065 NC_000014.9 scf362 98.86 True CONTIG scf362 70065 correct 63122640 63133851 1 12795 NC_000014.9 scf363 99.4 True fake: scaffold gap size wrong estimation (local) 63133761 63139327 13594 20391 NC_000014.9 scf363 98.74 True CONTIG scf363 20391 correct 20254525 20264953 12235 1 NC_000014.9 scf364 98.15 True fake: scaffold gap size wrong estimation (local) 20253197 20254362 14470 13305 NC_000014.9 scf364 99.91 True local misassembly 20250209 20252979 17241 14471 NC_000014.9 scf364 99.93 True fake: scaffold gap size wrong estimation (local) 20248317 20248945 18852 18224 NC_000014.9 scf364 100.0 True fake: scaffold gap size wrong estimation (local) 20244634 20248388 23418 19662 NC_000014.9 scf364 99.92 True fake: scaffold gap size wrong estimation (local) 20242284 20244519 26570 24322 NC_000014.9 scf364 99.42 True fake: scaffold gap size wrong estimation (local) 20238582 20242055 31939 27531 NC_000014.9 scf364 99.57 True CONTIG scf364 31939 correct 18353858 18356719 1 2862 NC_000014.9 scf365 99.97 True fake: scaffold gap size wrong estimation (local) 18356641 18360713 3540 7666 NC_000014.9 scf365 99.5 True fake: scaffold gap size wrong estimation (local) 18360513 18364697 8170 12354 NC_000014.9 scf365 99.9 True fake: scaffold gap size wrong estimation (local) 18364911 18367020 13349 15458 NC_000014.9 scf365 99.91 True fake: scaffold gap size wrong estimation (local) 18366934 18370122 16170 19358 NC_000014.9 scf365 100.0 True fake: scaffold gap size wrong estimation (local) 18370386 18371175 21026 21815 NC_000014.9 scf365 100.0 True CONTIG scf365 25043 correct 48599121 48607659 11794 2492 NC_000014.9 scf366 98.05 True fake: scaffold gap size wrong estimation (local) 48597081 48598910 14595 12766 NC_000014.9 scf366 99.89 True fake: scaffold gap size wrong estimation (local) 48593863 48596155 18521 16229 NC_000014.9 scf366 99.96 True CONTIG scf366 18521 correct 88451652 88455872 4220 1 NC_000014.9 scf367 99.93 True fake: scaffold gap size wrong estimation (local) 88450959 88451519 5858 5298 NC_000014.9 scf367 100.0 True local misassembly 88448810 88450787 7836 5859 NC_000014.9 scf367 99.95 True CONTIG scf367 7836 correct 84504445 84505673 1 1243 NC_000014.9 scf368 98.31 True fake: scaffold gap size wrong estimation (local) 84505876 84511055 2258 7452 NC_000014.9 scf368 98.58 True CONTIG scf368 7452 correct 72400103 72402828 1 2726 NC_000014.9 scf369 99.96 True fake: scaffold gap size wrong estimation (local) 72402782 72409543 3461 10966 NC_000014.9 scf369 99.63 True CONTIG scf369 10966 correct 37776252 37781238 5749 1 NC_000014.9 scf370 98.95 True fake: scaffold gap size wrong estimation (local) 37772591 37776045 9937 6470 NC_000014.9 scf370 99.51 True CONTIG scf370 9937 correct 37915052 37919826 5465 1 NC_000014.9 scf371 99.4 True CONTIG scf371 5465 correct 105547512 105548046 1 535 NC_000014.9 scf372 100.0 True fake: scaffold gap size wrong estimation (local) 105548501 105552854 2031 6436 NC_000014.9 scf372 98.77 True fake: scaffold gap size wrong estimation (local) 105553673 105554508 7995 8830 NC_000014.9 scf372 99.88 True CONTIG scf372 11954 correct 91634754 91638493 1 3740 NC_000014.9 scf373 99.84 True fake: scaffold gap size wrong estimation (local) 91638406 91639831 4642 6096 NC_000014.9 scf373 97.87 True CONTIG scf373 6331 correct 20917815 20918614 1 791 NC_000014.9 scf374 98.75 True fake: scaffold gap size wrong estimation (local) 20919156 20919706 1170 1720 NC_000014.9 scf374 100.0 True fake: scaffold gap size wrong estimation (local) 20920617 20922795 3413 5591 NC_000014.9 scf374 100.0 True fake: scaffold gap size wrong estimation (local) 20923802 20926314 7356 9811 NC_000014.9 scf374 97.61 True fake: scaffold gap size wrong estimation (local) 20926349 20927342 10919 11912 NC_000014.9 scf374 99.8 True local misassembly 20928222 20928768 12524 13070 NC_000014.9 scf374 100.0 True fake: scaffold gap size wrong estimation (local) 20929749 20930578 15020 15849 NC_000014.9 scf374 100.0 True local misassembly 20931348 20932011 16181 16844 NC_000014.9 scf374 99.85 True fake: scaffold gap size wrong estimation (local) 20934030 20935025 19468 20463 NC_000014.9 scf374 100.0 True local misassembly 20933542 20934117 20464 21039 NC_000014.9 scf374 99.83 True fake: scaffold gap size wrong estimation (local) 20936441 20936942 23898 24399 NC_000014.9 scf374 99.0 True local misassembly 20937197 20937808 24502 25113 NC_000014.9 scf374 99.67 True fake: scaffold gap size wrong estimation (local) 20937727 20941330 26008 29611 NC_000014.9 scf374 99.97 True fake: scaffold gap size wrong estimation (local) 20941606 20944310 30613 33291 NC_000014.9 scf374 99.0 True CONTIG scf374 33291 correct 34754142 34755858 1736 1 NC_000014.9 scf375 98.91 True fake: scaffold gap size wrong estimation (local) 34751702 34754022 5053 2733 NC_000014.9 scf375 99.96 True fake: scaffold gap size wrong estimation (local) 34749970 34751125 7941 6786 NC_000014.9 scf375 100.0 True local misassembly 34748494 34749467 8915 7942 NC_000014.9 scf375 100.0 True fake: scaffold gap size wrong estimation (local) 34747814 34748493 9875 9196 NC_000014.9 scf375 100.0 True fake: scaffold gap size wrong estimation (local) 34743791 34747265 14839 11365 NC_000014.9 scf375 99.94 True fake: scaffold gap size wrong estimation (local) 34741537 34743443 17876 15970 NC_000014.9 scf375 99.95 True fake: scaffold gap size wrong estimation (local) 34740033 34741061 20597 19540 NC_000014.9 scf375 96.88 True CONTIG scf375 20597 correct 30680909 30684799 3904 1 NC_000014.9 scf376 99.59 True fake: scaffold gap size wrong estimation (local) 30677896 30681005 7644 4537 NC_000014.9 scf376 99.94 True CONTIG scf376 7644 correct 101673479 101674589 2 1112 NC_000014.9 scf377 99.91 True fake: scaffold gap size wrong estimation (local) 101676260 101680891 3445 8003 NC_000014.9 scf377 98.21 True fake: scaffold gap size wrong estimation (local) 101681388 101685060 9281 12990 NC_000014.9 scf377 98.87 True fake: scaffold gap size wrong estimation (local) 101685377 101686102 14513 15238 NC_000014.9 scf377 99.72 True local misassembly 101686523 101687320 15239 16036 NC_000014.9 scf377 99.87 True fake: scaffold gap size wrong estimation (local) 101687321 101689746 17518 19943 NC_000014.9 scf377 99.79 True local misassembly 101690072 101690978 19944 20850 NC_000014.9 scf377 100.0 True fake: scaffold gap size wrong estimation (local) 101690890 101692293 21813 23216 NC_000014.9 scf377 100.0 True fake: scaffold gap size wrong estimation (local) 101693970 101698876 25517 30447 NC_000014.9 scf377 99.49 True fake: scaffold gap size wrong estimation (local) 101698972 101700841 31346 33228 NC_000014.9 scf377 99.26 True fake: scaffold gap size wrong estimation (local) 101702230 101702808 35532 36097 NC_000014.9 scf377 97.06 True CONTIG scf377 36097 correct 20866199 20874459 1 9780 NC_000014.9 scf378 96.65 True fake: scaffold gap size wrong estimation (local) 20876204 20876779 12235 12810 NC_000014.9 scf378 99.65 True fake: scaffold gap size wrong estimation (local) 20876780 20877716 13179 14115 NC_000014.9 scf378 100.0 True fake: scaffold gap size wrong estimation (local) 20877990 20880405 15469 17884 NC_000014.9 scf378 99.92 True CONTIG scf378 17884 correct 20909524 20911130 1668 5 NC_000014.9 scf379 96.33 True fake: scaffold gap size wrong estimation (local) 20904006 20909430 8680 2638 NC_000014.9 scf379 95.23 True fake: scaffold gap size wrong estimation (local) 20902948 20904043 10804 9709 NC_000014.9 scf379 99.73 True fake: scaffold gap size wrong estimation (local) 20901617 20902432 11933 11118 NC_000014.9 scf379 99.88 True fake: scaffold gap size wrong estimation (local) 20898625 20899190 16312 15747 NC_000014.9 scf379 100.0 True fake: scaffold gap size wrong estimation (local) 20895602 20897869 20252 18001 NC_000014.9 scf379 99.16 True fake: scaffold gap size wrong estimation (local) 20890701 20894932 26719 21756 NC_000014.9 scf379 96.55 True fake: scaffold gap size wrong estimation (local) 20889118 20890559 28299 26858 NC_000014.9 scf379 99.86 True fake: scaffold gap size wrong estimation (local) 20886916 20888450 31380 29846 NC_000014.9 scf379 99.61 True local misassembly 20885728 20886402 32055 31381 NC_000014.9 scf379 99.85 True fake: scaffold gap size wrong estimation (local) 20884779 20885399 34330 33690 NC_000014.9 scf379 96.72 True CONTIG scf379 34521 correct 18228909 18231857 1 2949 NC_000014.9 scf380 99.86 True fake: scaffold gap size wrong estimation (local) 18232803 18233743 4822 5793 NC_000014.9 scf380 96.5 True fake: scaffold gap size wrong estimation (local) 18235707 18236476 8471 9240 NC_000014.9 scf380 99.87 True CONTIG scf380 9240 correct 34509730 34510649 1 920 NC_000014.9 scf381 99.78 True fake: scaffold gap size wrong estimation (local) 34512494 34513029 3516 4051 NC_000014.9 scf381 100.0 True local misassembly 34513769 34514789 4402 5422 NC_000014.9 scf381 100.0 True fake: scaffold gap size wrong estimation (local) 34515953 34517023 7579 8649 NC_000014.9 scf381 99.91 True fake: scaffold gap size wrong estimation (local) 34518329 34519998 10743 12412 NC_000014.9 scf381 99.88 True local misassembly 34520369 34521339 12625 13595 NC_000014.9 scf381 99.9 True fake: scaffold gap size wrong estimation (local) 34522039 34523255 15672 16888 NC_000014.9 scf381 99.84 True fake: scaffold gap size wrong estimation (local) 34523520 34524540 18462 19482 NC_000014.9 scf381 99.8 True fake: scaffold gap size wrong estimation (local) 34526235 34526877 22018 22660 NC_000014.9 scf381 100.0 True local misassembly 34527383 34528045 22807 23469 NC_000014.9 scf381 99.7 True local misassembly 34529287 34529842 24269 24824 NC_000014.9 scf381 99.82 True fake: scaffold gap size wrong estimation (local) 34530032 34530925 26200 27093 NC_000014.9 scf381 100.0 True indel: indel (> 5bp) 34530994 34531995 27094 28095 NC_000014.9 scf381 99.5 True local misassembly 34532491 34533169 28096 28774 NC_000014.9 scf381 99.71 True fake: scaffold gap size wrong estimation (local) 34533139 34534135 30697 31693 NC_000014.9 scf381 99.9 True fake: scaffold gap size wrong estimation (local) 34534319 34534840 32044 32565 NC_000014.9 scf381 99.81 True fake: scaffold gap size wrong estimation (local) 34535537 34539974 33899 38492 NC_000014.9 scf381 97.53 True relocation, scaffold gap is present, inconsistency = 21538 34562352 34563373 40353 39332 NC_000014.9 scf381 99.9 True fake: scaffold gap size wrong estimation (local) 34559042 34560640 44140 42530 NC_000014.9 scf381 98.39 True fake: scaffold gap size wrong estimation (local) 34556986 34557683 46982 46309 NC_000014.9 scf381 96.56 True fake: scaffold gap size wrong estimation (local) 34553851 34556140 51019 48734 NC_000014.9 scf381 99.74 True fake: not a misassembly (possible transposable element) 34549384 34550253 52066 52935 NC_000014.9 scf381 99.43 True fake: not a misassembly (possible transposable element) 34550955 34552710 54712 52938 NC_000014.9 scf381 98.82 True fake: scaffold gap size wrong estimation (local) 34550231 34550733 56316 55814 NC_000014.9 scf381 100.0 True fake: scaffold gap size wrong estimation (local) 34548301 34549373 58123 57050 NC_000014.9 scf381 99.63 True CONTIG scf381 58123 misassembled 36122736 36123467 1 732 NC_000014.9 scf382 99.18 True fake: scaffold gap size wrong estimation (local) 36123986 36136305 2069 14389 NC_000014.9 scf382 99.74 True fake: scaffold gap size wrong estimation (local) 36136214 36141571 15065 21244 NC_000014.9 scf382 99.31 True fake: scaffold gap size wrong estimation (local) 36141482 36142746 22127 23391 NC_000014.9 scf382 99.76 True CONTIG scf382 23391 correct 70482773 70483697 1 925 NC_000014.9 scf383 100.0 True fake: scaffold gap size wrong estimation (local) 70483605 70491994 1646 10035 NC_000014.9 scf383 99.9 True fake: scaffold gap size wrong estimation (local) 70491897 70494475 10742 13232 NC_000014.9 scf383 96.51 True fake: scaffold gap size wrong estimation (local) 70494393 70496148 13920 15675 NC_000014.9 scf383 99.83 True fake: scaffold gap size wrong estimation (local) 70496051 70498732 16469 19150 NC_000014.9 scf383 99.85 True fake: scaffold gap size wrong estimation (local) 70498754 70499526 20133 20905 NC_000014.9 scf383 100.0 True local misassembly 70499899 70500571 21088 21760 NC_000014.9 scf383 100.0 True indel: indel (> 5bp) 70500639 70501790 21761 22912 NC_000014.9 scf383 99.91 True CONTIG scf383 22912 correct 37938231 37950446 12217 1 NC_000014.9 scf384 99.94 True fake: scaffold gap size wrong estimation (local) 37935440 37938327 15684 12931 NC_000014.9 scf384 95.26 True fake: scaffold gap size wrong estimation (local) 37923441 37935458 28545 16528 NC_000014.9 scf384 99.83 True fake: scaffold gap size wrong estimation (local) 37922314 37923206 30444 29535 NC_000014.9 scf384 98.13 True CONTIG scf384 30459 correct 45604965 45605757 793 1 NC_000014.9 scf385 99.87 True fake: scaffold gap size wrong estimation (local) 45602311 45604758 4424 1976 NC_000014.9 scf385 99.96 True fake: scaffold gap size wrong estimation (local) 45598947 45602385 8841 5371 NC_000014.9 scf385 98.96 True CONTIG scf385 8841 correct 106706504 106707969 59 1524 NC_000014.9 scf386 99.93 True fake: scaffold gap size wrong estimation (local) 106708051 106710475 2448 4872 NC_000014.9 scf386 99.75 True fake: scaffold gap size wrong estimation (local) 106710967 106712790 6115 7938 NC_000014.9 scf386 99.84 True fake: scaffold gap size wrong estimation (local) 106713223 106714907 9257 10940 NC_000014.9 scf386 99.35 True relocation, scaffold gap is present, inconsistency = 46554 106763723 106764270 13202 13749 NC_000014.9 scf386 99.82 True indel: indel (> 5bp) 106764271 106764847 13764 14340 NC_000014.9 scf386 99.48 True CONTIG scf386 14340 misassembled 18882495 18883117 1 623 NC_000014.9 scf387 100.0 True fake: scaffold gap size wrong estimation (local) 18883028 18885564 1931 4480 NC_000014.9 scf387 97.82 True CONTIG scf387 4480 correct 95260417 95262784 1 2368 NC_000014.9 scf388 99.96 True fake: scaffold gap size wrong estimation (local) 95262691 95268862 3064 9220 NC_000014.9 scf388 99.72 True CONTIG scf388 9220 correct 49754090 49756430 5 2345 NC_000014.9 scf389 99.87 True fake: scaffold gap size wrong estimation (local) 49756332 49757930 3202 4800 NC_000014.9 scf389 99.94 True local misassembly 49758292 49759364 4801 5873 NC_000014.9 scf389 99.81 True fake: scaffold gap size wrong estimation (local) 49759386 49760644 6992 8250 NC_000014.9 scf389 95.87 True CONTIG scf389 8250 correct 24490109 24492361 1 2253 NC_000014.9 scf390 99.64 True fake: scaffold gap size wrong estimation (local) 24492316 24493024 3345 4053 NC_000014.9 scf390 99.44 True CONTIG scf390 5045 correct 22635139 22636237 1124 1 NC_000014.9 scf391 97.51 True fake: scaffold gap size wrong estimation (local) 22633050 22634552 3973 2471 NC_000014.9 scf391 99.4 True fake: scaffold gap size wrong estimation (local) 22631184 22632198 6965 5951 NC_000014.9 scf391 99.8 True fake: scaffold gap size wrong estimation (local) 22627382 22630942 12181 7347 NC_000014.9 scf391 99.91 True fake: scaffold gap size wrong estimation (local) 22625681 22627291 14833 13223 NC_000014.9 scf391 100.0 True fake: scaffold gap size wrong estimation (local) 22621091 22625404 20528 16173 NC_000014.9 scf391 98.97 True CONTIG scf391 22299 correct 22676368 22677649 4 1311 NC_000014.9 scf392 98.01 True fake: scaffold gap size wrong estimation (local) 22677550 22679900 2287 4657 NC_000014.9 scf392 99.11 True CONTIG scf392 4657 correct 18268980 18269502 203 725 NC_000014.9 scf393 100.0 True fake: scaffold gap size wrong estimation (local) 18270779 18272146 2936 4358 NC_000014.9 scf393 95.1 True fake: scaffold gap size wrong estimation (local) 18273890 18275876 6860 8898 NC_000014.9 scf393 96.92 True fake: scaffold gap size wrong estimation (local) 18275837 18276592 10308 11096 NC_000014.9 scf393 95.18 True fake: scaffold gap size wrong estimation (local) 18279540 18280370 14498 15343 NC_000014.9 scf393 98.23 True fake: scaffold gap size wrong estimation (local) 18280498 18283679 16995 20212 NC_000014.9 scf393 98.73 True CONTIG scf393 20212 correct 86100785 86101325 1984 2542 NC_000014.9 scf394 96.6 True fake: scaffold gap size wrong estimation (local) 86103472 86105442 5300 7270 NC_000014.9 scf394 100.0 True CONTIG scf394 7270 correct 105678518 105679494 1 997 NC_000014.9 scf395 96.12 True fake: scaffold gap size wrong estimation (local) 105680183 105681957 2686 4460 NC_000014.9 scf395 99.83 True CONTIG scf395 7104 correct 25776993 25778953 2756 4746 NC_000014.9 scf396 98.44 True CONTIG scf396 4746 correct 73569796 73570748 972 1 NC_000014.9 scf397 97.94 True fake: scaffold gap size wrong estimation (local) 73560988 73568574 12313 3055 NC_000014.9 scf397 97.52 True fake: scaffold gap size wrong estimation (local) 73558599 73559193 15962 15368 NC_000014.9 scf397 99.83 True CONTIG scf397 15962 correct 34565912 34567441 2162 3691 NC_000014.9 scf398 99.8 True local misassembly 34567644 34568473 3692 4521 NC_000014.9 scf398 99.88 True fake: scaffold gap size wrong estimation (local) 34568381 34572847 5515 11221 NC_000014.9 scf398 96.52 True fake: scaffold gap size wrong estimation (local) 34575312 34576068 13777 14533 NC_000014.9 scf398 100.0 True fake: scaffold gap size wrong estimation (local) 34576891 34578633 17263 19038 NC_000014.9 scf398 98.14 True CONTIG scf398 19057 correct 18291777 18292948 3 1174 NC_000014.9 scf399 99.91 True fake: scaffold gap size wrong estimation (local) 18295069 18298119 3717 6814 NC_000014.9 scf399 98.35 True fake: scaffold gap size wrong estimation (local) 18299071 18300020 9335 10318 NC_000014.9 scf399 96.54 True CONTIG scf399 10318 correct 105689616 105690572 486 1440 NC_000014.9 scf400 99.37 True CONTIG scf400 1453 correct 24006182 24007770 1 1598 NC_000014.9 scf401 99.12 True CONTIG scf401 1598 correct 58039701 58041535 1854 1 NC_000014.9 scf402 98.6 True CONTIG scf402 1854 correct 24030335 24031350 1 1031 NC_000014.9 scf403 98.55 True fake: scaffold gap size wrong estimation (local) 24031277 24033444 2295 4526 NC_000014.9 scf403 97.13 True fake: scaffold gap size wrong estimation (local) 24037445 24039193 9628 11348 NC_000014.9 scf403 98.36 True fake: scaffold gap size wrong estimation (local) 24042337 24043718 17364 18745 NC_000014.9 scf403 99.93 True fake: scaffold gap size wrong estimation (local) 24045113 24045646 21061 21594 NC_000014.9 scf403 100.0 True local misassembly 24046620 24047357 21595 22332 NC_000014.9 scf403 100.0 True relocation, scaffold gap is present, inconsistency = -83546 23966238 23967286 24759 25822 NC_000014.9 scf403 96.24 True CONTIG scf403 25822 misassembled 19247675 19249608 1947 1 NC_000014.9 scf404 97.95 True CONTIG scf404 1957 correct 57107103 57108404 3123 4424 NC_000014.9 scf405 100.0 True fake: scaffold gap size wrong estimation (local) 57109212 57109980 6440 7208 NC_000014.9 scf405 99.74 True local misassembly 57110550 57111475 7209 8134 NC_000014.9 scf405 99.78 True fake: scaffold gap size wrong estimation (local) 57111477 57112370 9690 10601 NC_000014.9 scf405 97.92 True CONTIG scf405 10643 correct 105670522 105671217 17 712 NC_000014.9 scf406 100.0 True fake: scaffold gap size wrong estimation (local) 105673223 105674579 3391 4747 NC_000014.9 scf406 100.0 True CONTIG scf406 7780 correct 58038508 58039857 1364 1 NC_000014.9 scf407 98.68 True CONTIG scf407 1364 correct 19492805 19494143 1354 1 NC_000014.9 scf408 98.6 True CONTIG scf408 1354 correct 105701494 105703549 2102 1 NC_000014.9 scf409 97.57 True CONTIG scf409 2102 correct 34642119 34643055 1 953 NC_000014.9 scf410 97.9 True fake: scaffold gap size wrong estimation (local) 34644586 34645775 3303 4496 NC_000014.9 scf410 99.41 True fake: scaffold gap size wrong estimation (local) 34647483 34648075 7195 7787 NC_000014.9 scf410 100.0 True CONTIG scf410 7787 correct 105647754 105648937 1 1184 NC_000014.9 scf411 99.83 True fake: scaffold gap size wrong estimation (local) 105651638 105652157 4220 4739 NC_000014.9 scf411 99.81 True CONTIG scf411 4739 correct 18236406 18237755 1 1372 NC_000014.9 scf412 98.4 True fake: scaffold gap size wrong estimation (local) 18239492 18240298 3990 4821 NC_000014.9 scf412 96.88 True CONTIG scf412 4821 correct 105628956 105630105 11 1163 NC_000014.9 scf413 98.96 True fake: scaffold gap size wrong estimation (local) 105631677 105632641 3687 4677 NC_000014.9 scf413 97.07 True CONTIG scf413 4677 correct 106762127 106763375 1263 1 NC_000014.9 scf414 97.07 True CONTIG scf414 1263 correct 74379544 74380056 1 513 NC_000014.9 scf415 100.0 True fake: scaffold gap size wrong estimation (local) 74381602 74382634 3049 4089 NC_000014.9 scf415 99.14 True CONTIG scf415 4089 correct 18253509 18254333 1 825 NC_000014.9 scf416 100.0 True fake: scaffold gap size wrong estimation (local) 18256173 18257083 3381 4309 NC_000014.9 scf416 98.06 True fake: scaffold gap size wrong estimation (local) 18259028 18259624 6947 7543 NC_000014.9 scf416 100.0 True fake: scaffold gap size wrong estimation (local) 18261656 18262682 10223 11249 NC_000014.9 scf416 99.9 True CONTIG scf416 11249 correct 105665060 105666816 1 1764 NC_000014.9 scf417 99.26 True fake: scaffold gap size wrong estimation (local) 105668876 105669423 4585 5132 NC_000014.9 scf417 99.64 True CONTIG scf417 5662 correct 18290477 18291874 1 1439 NC_000014.9 scf418 96.94 True CONTIG scf418 1439 correct 23984697 23985643 945 1 NC_000014.9 scf419 99.79 True fake: scaffold gap size wrong estimation (local) 23981977 23982542 4293 3728 NC_000014.9 scf419 99.65 True CONTIG scf419 4293 correct 23964257 23965185 929 1 NC_000014.9 scf420 100.0 True fake: scaffold gap size wrong estimation (local) 23961765 23962545 4288 3508 NC_000014.9 scf420 99.62 True CONTIG scf420 4301 correct 47836693 47837999 1 1329 NC_000014.9 scf421 97.29 True CONTIG scf421 1329 correct 18318253 18319005 753 1 NC_000014.9 scf422 99.87 True fake: scaffold gap size wrong estimation (local) 18315417 18316195 4420 3611 NC_000014.9 scf422 96.17 True fake: scaffold gap size wrong estimation (local) 18312981 18313744 8239 7476 NC_000014.9 scf422 100.0 True CONTIG scf422 8704 correct 103469181 103470156 997 1 NC_000014.9 scf423 97.59 True CONTIG scf423 997 correct 18306401 18307361 1 974 NC_000014.9 scf424 98.56 True fake: scaffold gap size wrong estimation (local) 18309382 18310037 3573 4228 NC_000014.9 scf424 100.0 True CONTIG scf424 4265 correct 49359845 49360408 591 28 NC_000014.9 scf425 99.82 True fake: scaffold gap size wrong estimation (local) 49357351 49358320 2799 1812 NC_000014.9 scf425 98.18 True fake: scaffold gap size wrong estimation (local) 49353005 49357425 8030 3558 NC_000014.9 scf425 98.75 True fake: scaffold gap size wrong estimation (local) 49349822 49351544 12596 10813 NC_000014.9 scf425 96.41 True CONTIG scf425 12609 correct 70248865 70249751 1 906 NC_000014.9 scf426 97.79 True CONTIG scf426 906 correct 105643842 105644378 3362 3898 NC_000014.9 scf427 99.81 True fake: scaffold gap size wrong estimation (local) 105646404 105647211 6700 7507 NC_000014.9 scf427 99.75 True CONTIG scf427 7507 correct 106400721 106401748 1 1048 NC_000014.9 scf428 97.14 True CONTIG scf428 1048 correct 21547987 21549260 1 1286 NC_000014.9 scf429 99.07 True CONTIG scf429 1286 correct 18298269 18299153 1 919 NC_000014.9 scf430 96.19 True CONTIG scf430 919 correct 21542732 21544587 2772 4627 NC_000014.9 scf431 99.95 True fake: scaffold gap size wrong estimation (local) 21545899 21546672 6687 7460 NC_000014.9 scf431 99.48 True CONTIG scf431 7460 correct 103652544 103653441 898 1 NC_000014.9 scf432 99.89 True fake: scaffold gap size wrong estimation (local) 103649859 103650598 4328 3590 NC_000014.9 scf432 99.59 True CONTIG scf432 4328 correct 34492614 34493533 946 10 NC_000014.9 scf433 97.97 True CONTIG scf433 956 correct 105556841 105557895 1086 1 NC_000014.9 scf434 96.78 True CONTIG scf434 1086 correct 34563544 34565099 1621 29 NC_000014.9 scf435 97.55 True CONTIG scf435 1621 correct 73538760 73539819 1 1085 NC_000014.9 scf436 95.78 True CONTIG scf436 1085 correct 18572465 18573252 1 810 NC_000014.9 scf437 97.16 True CONTIG scf437 810 correct 100197952 100198644 715 1 NC_000014.9 scf438 96.78 True CONTIG scf438 715 correct 93167039 93167751 729 1 NC_000014.9 scf439 97.81 True CONTIG scf439 729 correct 18251638 18252376 1 756 NC_000014.9 scf440 97.75 True CONTIG scf440 756 correct 18241294 18241912 9 643 NC_000014.9 scf441 97.32 True fake: scaffold gap size wrong estimation (local) 18243630 18244161 3443 3974 NC_000014.9 scf441 99.81 True CONTIG scf441 3974 correct 19375939 19376774 855 1 NC_000014.9 scf442 97.55 True CONTIG scf442 855 correct 19133507 19134198 709 1 NC_000014.9 scf443 96.35 True CONTIG scf443 709 correct 18348660 18349167 1243 736 NC_000014.9 scf444 99.61 True CONTIG scf444 1415 correct_unaligned 105658272 105659325 1 1096 NC_000014.9 scf445 96.17 True CONTIG scf445 1096 correct 19402837 19403546 1 736 NC_000014.9 scf446 95.79 True CONTIG scf446 736 correct 92229919 92230591 697 1 NC_000014.9 scf447 96.56 True CONTIG scf447 697 correct 18223537 18224234 1 712 NC_000014.9 scf448 98.03 True CONTIG scf448 712 correct 35152295 35152795 190 690 NC_000014.9 scf449 99.6 True CONTIG scf449 696 correct 94147554 94148356 827 1 NC_000014.9 scf450 96.98 True CONTIG scf450 827 correct 34813423 34814142 733 1 NC_000014.9 scf451 98.09 True CONTIG scf451 733 correct 34503949 34504762 1 825 NC_000014.9 scf452 98.55 True CONTIG scf452 825 correct 92096982 92097647 726 42 NC_000014.9 scf453 96.79 True CONTIG scf453 726 correct 105653586 105654313 748 1 NC_000014.9 scf454 97.06 True CONTIG scf454 748 correct 84502975 84503707 762 9 NC_000014.9 scf455 97.21 True CONTIG scf455 762 correct 71251542 71252197 1 673 NC_000014.9 scf456 97.47 True CONTIG scf456 673 correct CONTIG scf457 1042 unaligned CONTIG scf458 728 unaligned 40566186 40566860 1 697 NC_000014.9 scf459 96.27 True CONTIG scf459 697 correct 38673943 38674491 1 549 NC_000014.9 scf460 100.0 True CONTIG scf460 1059 correct 18313979 18314589 627 1 NC_000014.9 scf461 97.29 True CONTIG scf461 627 correct 31811429 31811995 1 567 NC_000014.9 scf462 100.0 True CONTIG scf462 633 correct 106705179 106705731 1 570 NC_000014.9 scf463 96.84 True CONTIG scf463 611 correct 22990533 22991447 928 1 NC_000014.9 scf464 98.6 True CONTIG scf464 928 correct 21547155 21548012 2 873 NC_000014.9 scf465 98.28 True CONTIG scf465 873 correct 87237225 87238123 1 909 NC_000014.9 scf466 98.79 True CONTIG scf466 909 correct 106334157 106334825 23 703 NC_000014.9 scf467 96.18 True CONTIG scf467 703 correct CONTIG scf468 794 unaligned 104664510 104665230 1 748 NC_000014.9 scf469 95.34 True CONTIG scf469 748 correct 102597822 102598708 1 898 NC_000014.9 scf470 98.55 True CONTIG scf470 898 correct 34636892 34637595 720 1 NC_000014.9 scf471 97.5 True CONTIG scf471 720 correct 21471020 21471627 1 619 NC_000014.9 scf472 97.74 True CONTIG scf472 619 correct 100749417 100750014 1 609 NC_000014.9 scf473 98.03 True CONTIG scf473 633 correct 20880870 20881427 1 571 NC_000014.9 scf474 96.69 True CONTIG scf474 571 correct 19639979 19640599 640 1 NC_000014.9 scf475 97.03 True CONTIG scf475 640 correct 103472103 103472736 1 651 NC_000014.9 scf476 96.32 True CONTIG scf476 651 correct 59553978 59554599 634 1 NC_000014.9 scf477 97.79 True CONTIG scf477 634 correct 61010350 61011144 816 1 NC_000014.9 scf478 97.18 True CONTIG scf478 816 correct 19191206 19191804 1 612 NC_000014.9 scf479 97.55 True CONTIG scf479 612 correct 35179367 35180046 694 1 NC_000014.9 scf480 97.98 True CONTIG scf480 694 correct 74322895 74323533 651 1 NC_000014.9 scf481 98.16 True CONTIG scf481 651 correct 37160603 37161288 1 712 NC_000014.9 scf482 96.35 True CONTIG scf482 712 correct 18644607 18645186 594 1 NC_000014.9 scf483 97.47 True CONTIG scf483 594 correct CONTIG scf484 818 unaligned CONTIG scf485 978 unaligned 105664543 105665156 1 624 NC_000014.9 scf486 97.76 True CONTIG scf486 624 correct 56457444 56458099 674 1 NC_000014.9 scf487 97.18 True CONTIG scf487 674 correct CONTIG scf488 572 unaligned 73544435 73545177 761 1 NC_000014.9 scf489 97.37 True CONTIG scf489 761 correct 102261458 102262048 605 1 NC_000014.9 scf490 97.69 True CONTIG scf490 605 correct CONTIG scf491 845 unaligned 106409576 106410340 1 781 NC_000014.9 scf492 97.44 True CONTIG scf492 781 correct 23959558 23960142 1 595 NC_000014.9 scf493 96.81 True CONTIG scf493 595 correct 22562561 22563147 598 1 NC_000014.9 scf494 97.99 True CONTIG scf494 601 correct 34786699 34787287 605 1 NC_000014.9 scf495 97.36 True CONTIG scf495 605 correct 105624700 105625306 1 621 NC_000014.9 scf496 97.58 True CONTIG scf496 621 correct 21545405 21545911 535 16 NC_000014.9 scf497 97.5 True CONTIG scf497 535 correct 91209011 91209647 1 667 NC_000014.9 scf498 95.5 True CONTIG scf498 668 correct 102410961 102411662 1 721 NC_000014.9 scf499 97.36 True CONTIG scf499 733 correct CONTIG scf500 584 unaligned 43334541 43335100 586 1 NC_000014.9 scf501 95.56 True CONTIG scf501 586 correct 21293056 21293569 529 1 NC_000014.9 scf502 97.16 True CONTIG scf502 529 correct 98002589 98003529 1 980 NC_000014.9 scf503 96.02 True CONTIG scf503 980 correct 48571960 48572455 59 575 NC_000014.9 scf504 95.94 True CONTIG scf504 626 correct 59665604 59666233 1 644 NC_000014.9 scf505 97.52 True CONTIG scf505 644 correct 105683603 105684181 1 605 NC_000014.9 scf506 95.54 True CONTIG scf506 605 correct 64144943 64145589 1 665 NC_000014.9 scf507 97.29 True CONTIG scf507 665 correct 62048487 62049023 1 558 NC_000014.9 scf508 95.88 True CONTIG scf508 563 correct 31152876 31153597 1 739 NC_000014.9 scf509 97.43 True CONTIG scf509 739 correct 47379072 47379740 1 681 NC_000014.9 scf510 97.94 True CONTIG scf510 681 correct 24753795 24754320 1 535 NC_000014.9 scf511 98.13 True CONTIG scf511 535 correct CONTIG scf512 543 unaligned CONTIG scf513 1043 unaligned CONTIG scf514 622 unaligned 19827237 19827942 725 1 NC_000014.9 scf515 97.24 True CONTIG scf515 725 correct 92455722 92456325 1 618 NC_000014.9 scf516 97.09 True CONTIG scf516 618 correct 50240774 50241526 774 1 NC_000014.9 scf517 96.52 True CONTIG scf517 774 correct 48262771 48263388 1 632 NC_000014.9 scf518 97.78 True CONTIG scf518 632 correct 74769315 74769862 1 564 NC_000014.9 scf519 95.92 True CONTIG scf519 564 correct CONTIG scf520 726 unaligned 62044380 62044988 1 622 NC_000014.9 scf521 97.11 True CONTIG scf521 622 correct 20931950 20932596 668 1 NC_000014.9 scf522 96.86 True CONTIG scf522 668 correct 28636583 28637342 778 1 NC_000014.9 scf523 97.3 True CONTIG scf523 778 correct 23957881 23958671 820 1 NC_000014.9 scf524 96.46 True CONTIG scf524 820 correct 29778199 29778951 777 1 NC_000014.9 scf525 96.91 True CONTIG scf525 777 correct CONTIG scf526 521 unaligned 23996054 23996662 1 631 NC_000014.9 scf527 96.35 True CONTIG scf527 631 correct 106303120 106303670 574 1 NC_000014.9 scf528 95.82 True CONTIG scf528 574 correct 63714752 63715283 1 546 NC_000014.9 scf529 97.44 True CONTIG scf529 546 correct 18269937 18270589 1 669 NC_000014.9 scf530 97.16 True CONTIG scf530 669 correct 76749210 76749770 578 1 NC_000014.9 scf531 96.89 True CONTIG scf531 578 correct CONTIG scf532 744 unaligned CONTIG scf533 509 unaligned CONTIG scf534 949 unaligned 21760968 21762042 1 1124 NC_000014.9 scf535 95.11 True fake: scaffold gap size wrong estimation (local) 21763423 21764024 3351 3952 NC_000014.9 scf535 99.17 True CONTIG scf535 3952 correct 29957896 29958437 1 562 NC_000014.9 scf536 96.44 True CONTIG scf536 562 correct 40610005 40610488 520 16 NC_000014.9 scf537 95.84 True CONTIG scf537 520 correct CONTIG scf538 549 unaligned 106244593 106245076 1 501 NC_000014.9 scf539 96.21 True CONTIG scf539 501 correct 91522950 91523466 528 1 NC_000014.9 scf540 97.17 True CONTIG scf540 528 correct 72912908 72913422 1 531 NC_000014.9 scf541 96.99 True CONTIG scf541 531 correct 31809067 31809570 1 521 NC_000014.9 scf542 96.16 True CONTIG scf542 521 correct CONTIG scf543 512 unaligned 85020818 85021456 1 656 NC_000014.9 scf544 97.41 True CONTIG scf544 656 correct CONTIG scf545 698 unaligned CONTIG scf546 450 unaligned CONTIG scf547 504 unaligned 57646225 57646757 1 547 NC_000014.9 scf548 97.44 True CONTIG scf548 547 correct 22913816 22914343 557 11 NC_000014.9 scf549 95.99 True CONTIG scf549 557 correct CONTIG scf550 556 unaligned 26001965 26002513 623 58 NC_000014.9 scf551 96.64 True CONTIG scf551 623 correct 45483078 45483554 1 500 NC_000014.9 scf552 95.4 True CONTIG scf552 500 correct 55995184 55995748 587 1 NC_000014.9 scf553 96.25 True CONTIG scf553 607 correct CONTIG scf554 474 unaligned CONTIG scf555 611 unaligned CONTIG scf556 750 unaligned 91565982 91566497 1 530 NC_000014.9 scf557 97.17 True CONTIG scf557 530 correct CONTIG scf558 483 unaligned 35316281 35316801 1 535 NC_000014.9 scf559 97.38 True CONTIG scf559 625 correct CONTIG scf560 497 unaligned CONTIG scf561 496 unaligned 18264746 18265259 19 556 NC_000014.9 scf562 95.17 True CONTIG scf562 567 correct CONTIG scf563 549 unaligned CONTIG scf564 491 unaligned CONTIG scf565 508 unaligned 106766134 106766630 518 9 NC_000014.9 scf566 96.67 True CONTIG scf566 518 correct CONTIG scf567 467 unaligned CONTIG scf568 457 unaligned 70243363 70244136 1 803 NC_000014.9 scf569 96.26 True CONTIG scf569 803 correct CONTIG scf570 468 unaligned CONTIG scf571 487 unaligned 50239291 50239819 1 542 NC_000014.9 scf572 97.6 True CONTIG scf572 542 correct CONTIG scf573 742 unaligned 106643383 106644052 681 1 NC_000014.9 scf574 98.38 True CONTIG scf574 681 correct CONTIG scf575 419 unaligned 31247571 31248099 1 544 NC_000014.9 scf576 96.88 True CONTIG scf576 544 correct 46442629 46443162 1 552 NC_000014.9 scf577 96.74 True CONTIG scf577 552 correct CONTIG scf578 455 unaligned 104546716 104547241 1 542 NC_000014.9 scf579 95.57 True CONTIG scf579 542 correct CONTIG scf580 559 unaligned CONTIG scf581 886 unaligned CONTIG scf582 402 unaligned 49606136 49607121 1 1010 NC_000014.9 scf583 97.62 True CONTIG scf583 1010 correct CONTIG scf584 457 unaligned 105697990 105698484 1 509 NC_000014.9 scf585 97.25 True CONTIG scf585 509 correct 35026849 35027615 1 800 NC_000014.9 scf586 95.88 True CONTIG scf586 800 correct 56458991 56459512 535 1 NC_000014.9 scf587 97.38 True CONTIG scf587 562 correct CONTIG scf588 464 unaligned 45475562 45476099 552 1 NC_000014.9 scf589 97.28 True CONTIG scf589 552 correct 33090858 33091345 1 505 NC_000014.9 scf590 96.63 True CONTIG scf590 514 correct 105555182 105555725 1 571 NC_000014.9 scf591 95.1 True CONTIG scf591 571 correct 48593471 48593958 1 505 NC_000014.9 scf592 96.63 True CONTIG scf592 505 correct 81546522 81547228 1 743 NC_000014.9 scf593 95.15 True CONTIG scf593 743 correct 73583339 73583843 1 518 NC_000014.9 scf594 97.49 True CONTIG scf594 518 correct 31332962 31333493 1 544 NC_000014.9 scf595 97.61 True CONTIG scf595 544 correct 31810033 31810536 522 1 NC_000014.9 scf596 96.17 True CONTIG scf596 522 correct CONTIG scf597 694 unaligned CONTIG scf598 580 unaligned CONTIG scf599 462 unaligned 70239074 70239638 577 1 NC_000014.9 scf600 97.4 True CONTIG scf600 577 correct CONTIG scf601 459 unaligned 51469067 51469556 500 1 NC_000014.9 scf602 97.6 True CONTIG scf602 500 correct CONTIG scf603 531 unaligned 53427210 53427731 534 1 NC_000014.9 scf604 97.75 True fake: scaffold gap size wrong estimation (local) 53424925 53425438 3865 3352 NC_000014.9 scf604 100.0 True CONTIG scf604 3865 correct CONTIG scf605 478 unaligned CONTIG scf606 460 unaligned CONTIG scf607 482 unaligned 18246262 18246837 1 590 NC_000014.9 scf608 97.46 True CONTIG scf608 590 correct CONTIG scf609 486 unaligned CONTIG scf610 455 unaligned CONTIG scf611 479 unaligned CONTIG scf612 469 unaligned CONTIG scf613 450 unaligned 20078875 20079414 1 563 NC_000014.9 scf614 95.74 True CONTIG scf614 563 correct CONTIG scf615 486 unaligned 18307341 18307932 10 615 NC_000014.9 scf616 97.69 True CONTIG scf616 615 correct 37504006 37504590 606 1 NC_000014.9 scf617 96.53 True CONTIG scf617 606 correct CONTIG scf618 606 unaligned CONTIG scf619 479 unaligned CONTIG scf620 440 unaligned CONTIG scf621 422 unaligned 29956129 29956631 1 525 NC_000014.9 scf622 95.24 True CONTIG scf622 525 correct 25183929 25184537 1 635 NC_000014.9 scf623 95.59 True CONTIG scf623 655 correct CONTIG scf624 447 unaligned CONTIG scf625 379 unaligned CONTIG scf626 528 unaligned 51415170 51415657 507 1 NC_000014.9 scf627 96.25 True CONTIG scf627 507 correct 75922451 75922948 1 513 NC_000014.9 scf628 96.69 True CONTIG scf628 513 correct CONTIG scf629 792 unaligned CONTIG scf630 487 unaligned 57743631 57744122 509 1 NC_000014.9 scf631 96.66 True CONTIG scf631 539 correct 20944390 20944895 1 523 NC_000014.9 scf632 95.41 True CONTIG scf632 523 correct 73484871 73485459 606 1 NC_000014.9 scf633 97.19 True CONTIG scf633 606 correct CONTIG scf634 454 unaligned CONTIG scf635 414 unaligned CONTIG scf636 436 unaligned CONTIG scf637 481 unaligned CONTIG scf638 458 unaligned CONTIG scf639 536 unaligned 48483884 48484420 554 1 NC_000014.9 scf640 96.03 True CONTIG scf640 554 correct CONTIG scf641 396 unaligned CONTIG scf642 445 unaligned 79769406 79769908 1 524 NC_000014.9 scf643 95.8 True CONTIG scf643 524 correct CONTIG scf644 461 unaligned CONTIG scf645 510 unaligned CONTIG scf646 428 unaligned CONTIG scf647 734 unaligned 42644674 42645183 1 530 NC_000014.9 scf648 96.23 True CONTIG scf648 530 correct CONTIG scf649 434 unaligned CONTIG scf650 411 unaligned CONTIG scf651 496 unaligned CONTIG scf652 409 unaligned CONTIG scf653 422 unaligned 48368012 48368497 1 504 NC_000014.9 scf654 96.43 True CONTIG scf654 504 correct 89433260 89433987 1 741 NC_000014.9 scf655 97.44 True CONTIG scf655 741 correct CONTIG scf656 393 unaligned CONTIG scf657 1084 unaligned CONTIG scf658 485 unaligned CONTIG scf659 422 unaligned CONTIG scf660 351 unaligned CONTIG scf661 408 unaligned CONTIG scf662 430 unaligned 48257518 48258071 1 571 NC_000014.9 scf663 96.85 True CONTIG scf663 571 correct 105664124 105664616 1 508 NC_000014.9 scf664 96.85 True CONTIG scf664 508 correct CONTIG scf665 560 unaligned CONTIG scf666 473 unaligned CONTIG scf667 410 unaligned 102615078 102615588 525 1 NC_000014.9 scf668 96.96 True CONTIG scf668 525 correct 35373639 35374171 17 556 NC_000014.9 scf669 95.6 True CONTIG scf669 556 correct CONTIG scf670 385 unaligned CONTIG scf671 337 unaligned CONTIG scf672 717 unaligned 39262123 39262673 1 563 NC_000014.9 scf673 97.69 True CONTIG scf673 566 correct CONTIG scf674 703 unaligned CONTIG scf675 441 unaligned CONTIG scf676 556 unaligned CONTIG scf677 359 unaligned 19510213 19510731 543 12 NC_000014.9 scf678 97.56 True CONTIG scf678 543 correct 34393400 34393932 549 1 NC_000014.9 scf679 97.09 True CONTIG scf679 549 correct 48282851 48283450 1 630 NC_000014.9 scf680 95.24 True CONTIG scf680 630 correct CONTIG scf681 390 unaligned CONTIG scf682 537 unaligned CONTIG scf683 550 unaligned CONTIG scf684 439 unaligned 73384814 73385306 510 1 NC_000014.9 scf685 96.28 True CONTIG scf685 510 correct 18334866 18335350 1 505 NC_000014.9 scf686 95.84 True CONTIG scf686 505 correct CONTIG scf687 707 unaligned 93290513 93291006 21 526 NC_000014.9 scf688 96.44 True CONTIG scf688 526 correct 24027830 24028354 540 1 NC_000014.9 scf689 97.22 True CONTIG scf689 540 correct CONTIG scf690 451 unaligned CONTIG scf691 401 unaligned CONTIG scf692 421 unaligned 98988804 98989324 1 533 NC_000014.9 scf693 97.75 True CONTIG scf693 533 correct CONTIG scf694 495 unaligned CONTIG scf695 451 unaligned CONTIG scf696 465 unaligned CONTIG scf697 402 unaligned CONTIG scf698 461 unaligned CONTIG scf699 356 unaligned CONTIG scf700 480 unaligned CONTIG scf701 402 unaligned 33828890 33829433 577 19 NC_000014.9 scf702 96.6 True CONTIG scf702 577 correct CONTIG scf703 467 unaligned CONTIG scf704 463 unaligned CONTIG scf705 411 unaligned 44024100 44024686 1 615 NC_000014.9 scf706 95.28 True CONTIG scf706 615 correct CONTIG scf707 427 unaligned CONTIG scf708 437 unaligned 21485322 21485828 528 1 NC_000014.9 scf709 96.02 True CONTIG scf709 528 correct CONTIG scf710 497 unaligned CONTIG scf711 486 unaligned CONTIG scf712 437 unaligned CONTIG scf713 481 unaligned CONTIG scf714 498 unaligned CONTIG scf715 336 unaligned CONTIG scf716 447 unaligned CONTIG scf717 507 unaligned CONTIG scf718 469 unaligned CONTIG scf719 425 unaligned CONTIG scf720 443 unaligned CONTIG scf721 406 unaligned CONTIG scf722 360 unaligned CONTIG scf723 492 unaligned CONTIG scf724 386 unaligned CONTIG scf725 546 unaligned CONTIG scf726 461 unaligned CONTIG scf727 443 unaligned 82482793 82483326 1 559 NC_000014.9 scf728 95.53 True CONTIG scf728 567 correct CONTIG scf729 681 unaligned CONTIG scf730 389 unaligned 46166454 46166948 504 1 NC_000014.9 scf731 97.42 True CONTIG scf731 504 correct CONTIG scf732 539 unaligned CONTIG scf733 461 unaligned CONTIG scf734 411 unaligned CONTIG scf735 506 unaligned CONTIG scf736 443 unaligned CONTIG scf737 376 unaligned CONTIG scf738 481 unaligned CONTIG scf739 449 unaligned 80250210 80250985 1 795 NC_000014.9 scf740 97.48 True CONTIG scf740 795 correct CONTIG scf741 366 unaligned CONTIG scf742 411 unaligned CONTIG scf743 557 unaligned CONTIG scf744 402 unaligned CONTIG scf745 384 unaligned CONTIG scf746 373 unaligned CONTIG scf747 503 unaligned CONTIG scf748 345 unaligned CONTIG scf749 488 unaligned CONTIG scf750 581 unaligned CONTIG scf751 400 unaligned CONTIG scf752 385 unaligned CONTIG scf753 406 unaligned CONTIG scf754 462 unaligned CONTIG scf755 390 unaligned CONTIG scf756 413 unaligned CONTIG scf757 451 unaligned 57670003 57670492 501 1 NC_000014.9 scf758 97.6 True CONTIG scf758 501 correct CONTIG scf759 410 unaligned 88123421 88123913 9 524 NC_000014.9 scf760 95.54 True CONTIG scf760 524 correct CONTIG scf761 477 unaligned CONTIG scf762 310 unaligned 24585057 24585854 1 820 NC_000014.9 scf763 97.2 True CONTIG scf763 874 correct CONTIG scf764 550 unaligned CONTIG scf765 549 unaligned CONTIG scf766 494 unaligned CONTIG scf767 311 unaligned CONTIG scf768 403 unaligned CONTIG scf769 429 unaligned CONTIG scf770 626 unaligned CONTIG scf771 378 unaligned CONTIG scf772 542 unaligned 42644136 42644769 1 643 NC_000014.9 scf773 98.29 True CONTIG scf773 643 correct CONTIG scf774 425 unaligned CONTIG scf775 324 unaligned CONTIG scf776 427 unaligned CONTIG scf777 632 unaligned 30407313 30407822 546 21 NC_000014.9 scf778 96.77 True CONTIG scf778 546 correct CONTIG scf779 363 unaligned CONTIG scf780 319 unaligned CONTIG scf781 431 unaligned CONTIG scf782 390 unaligned CONTIG scf783 475 unaligned CONTIG scf784 595 unaligned CONTIG scf785 442 unaligned CONTIG scf786 859 unaligned CONTIG scf787 459 unaligned CONTIG scf788 362 unaligned CONTIG scf789 455 unaligned CONTIG scf790 368 unaligned CONTIG scf791 403 unaligned CONTIG scf792 388 unaligned CONTIG scf793 367 unaligned CONTIG scf794 370 unaligned CONTIG scf795 484 unaligned 59514171 59514660 1 513 NC_000014.9 scf796 95.52 True CONTIG scf796 529 correct CONTIG scf797 416 unaligned CONTIG scf798 433 unaligned CONTIG scf799 435 unaligned CONTIG scf800 391 unaligned CONTIG scf801 348 unaligned CONTIG scf802 505 unaligned CONTIG scf803 365 unaligned CONTIG scf804 357 unaligned CONTIG scf805 451 unaligned CONTIG scf806 406 unaligned CONTIG scf807 303 unaligned CONTIG scf808 384 unaligned CONTIG scf809 551 unaligned CONTIG scf810 515 unaligned CONTIG scf811 365 unaligned CONTIG scf812 545 unaligned CONTIG scf813 480 unaligned 51416869 51417522 687 1 NC_000014.9 scf814 95.2 True CONTIG scf814 687 correct CONTIG scf815 300 unaligned CONTIG scf816 324 unaligned CONTIG scf817 420 unaligned CONTIG scf818 464 unaligned CONTIG scf819 428 unaligned CONTIG scf820 454 unaligned CONTIG scf821 331 unaligned CONTIG scf822 433 unaligned CONTIG scf823 379 unaligned CONTIG scf824 388 unaligned CONTIG scf825 380 unaligned 40348628 40349135 4 532 NC_000014.9 scf826 95.84 True CONTIG scf826 532 correct CONTIG scf827 603 unaligned CONTIG scf828 333 unaligned CONTIG scf829 480 unaligned CONTIG scf830 573 unaligned CONTIG scf831 688 unaligned CONTIG scf832 426 unaligned CONTIG scf833 374 unaligned CONTIG scf834 426 unaligned CONTIG scf835 375 unaligned CONTIG scf836 372 unaligned CONTIG scf837 442 unaligned CONTIG scf838 477 unaligned CONTIG scf839 422 unaligned CONTIG scf840 381 unaligned CONTIG scf841 468 unaligned CONTIG scf842 362 unaligned CONTIG scf843 299 unaligned CONTIG scf844 573 unaligned CONTIG scf845 367 unaligned CONTIG scf846 424 unaligned CONTIG scf847 357 unaligned CONTIG scf848 444 unaligned 38192155 38192731 1 597 NC_000014.9 scf849 96.65 True CONTIG scf849 597 correct CONTIG scf850 422 unaligned CONTIG scf851 450 unaligned CONTIG scf852 392 unaligned CONTIG scf853 373 unaligned CONTIG scf854 413 unaligned CONTIG scf855 591 unaligned 20778737 20779262 542 1 NC_000014.9 scf856 97.05 True CONTIG scf856 542 correct CONTIG scf857 355 unaligned CONTIG scf858 427 unaligned CONTIG scf859 365 unaligned CONTIG scf860 485 unaligned CONTIG scf861 414 unaligned CONTIG scf862 382 unaligned CONTIG scf863 372 unaligned CONTIG scf864 391 unaligned CONTIG scf865 417 unaligned CONTIG scf866 367 unaligned CONTIG scf867 420 unaligned CONTIG scf868 351 unaligned CONTIG scf869 432 unaligned CONTIG scf870 358 unaligned CONTIG scf871 390 unaligned CONTIG scf872 358 unaligned CONTIG scf873 451 unaligned CONTIG scf874 385 unaligned CONTIG scf875 375 unaligned CONTIG scf876 353 unaligned CONTIG scf877 335 unaligned CONTIG scf878 430 unaligned 87359352 87359920 1 590 NC_000014.9 scf879 96.44 True CONTIG scf879 590 correct CONTIG scf880 426 unaligned CONTIG scf881 358 unaligned CONTIG scf882 356 unaligned 80246658 80247246 615 1 NC_000014.9 scf883 95.28 True CONTIG scf883 615 correct CONTIG scf884 381 unaligned CONTIG scf885 375 unaligned CONTIG scf886 350 unaligned 21006130 21006619 503 1 NC_000014.9 scf887 97.42 True CONTIG scf887 509 correct CONTIG scf888 418 unaligned CONTIG scf889 493 unaligned CONTIG scf890 391 unaligned CONTIG scf891 389 unaligned CONTIG scf892 342 unaligned CONTIG scf893 537 unaligned CONTIG scf894 422 unaligned CONTIG scf895 466 unaligned CONTIG scf896 375 unaligned CONTIG scf897 524 unaligned CONTIG scf898 394 unaligned CONTIG scf899 342 unaligned CONTIG scf900 366 unaligned CONTIG scf901 358 unaligned CONTIG scf902 363 unaligned CONTIG scf903 397 unaligned CONTIG scf904 408 unaligned CONTIG scf905 394 unaligned CONTIG scf906 364 unaligned CONTIG scf907 634 unaligned CONTIG scf908 381 unaligned CONTIG scf909 347 unaligned CONTIG scf910 390 unaligned CONTIG scf911 391 unaligned CONTIG scf912 438 unaligned CONTIG scf913 469 unaligned CONTIG scf914 408 unaligned CONTIG scf915 359 unaligned CONTIG scf916 386 unaligned CONTIG scf917 354 unaligned CONTIG scf918 276 unaligned CONTIG scf919 437 unaligned CONTIG scf920 348 unaligned CONTIG scf921 405 unaligned 105571548 105572081 1 557 NC_000014.9 scf922 95.33 True CONTIG scf922 557 correct CONTIG scf923 385 unaligned CONTIG scf924 394 unaligned CONTIG scf925 399 unaligned CONTIG scf926 377 unaligned CONTIG scf927 441 unaligned CONTIG scf928 332 unaligned CONTIG scf929 362 unaligned CONTIG scf930 416 unaligned CONTIG scf931 384 unaligned CONTIG scf932 552 unaligned CONTIG scf933 419 unaligned 36157390 36158122 1 767 NC_000014.9 scf934 95.44 True CONTIG scf934 767 correct CONTIG scf935 397 unaligned CONTIG scf936 365 unaligned CONTIG scf937 456 unaligned 53173604 53174174 1 593 NC_000014.9 scf938 96.29 True CONTIG scf938 607 correct CONTIG scf939 390 unaligned CONTIG scf940 385 unaligned CONTIG scf941 323 unaligned CONTIG scf942 429 unaligned CONTIG scf943 439 unaligned CONTIG scf944 548 unaligned CONTIG scf945 382 unaligned CONTIG scf946 365 unaligned CONTIG scf947 405 unaligned CONTIG scf948 432 unaligned CONTIG scf949 471 unaligned CONTIG scf950 431 unaligned CONTIG scf951 378 unaligned CONTIG scf952 425 unaligned 30405698 30406197 517 1 NC_000014.9 scf953 96.71 True CONTIG scf953 517 correct CONTIG scf954 400 unaligned CONTIG scf955 374 unaligned CONTIG scf956 386 unaligned CONTIG scf957 397 unaligned CONTIG scf958 400 unaligned CONTIG scf959 389 unaligned CONTIG scf960 344 unaligned CONTIG scf961 359 unaligned CONTIG scf962 392 unaligned CONTIG scf963 351 unaligned CONTIG scf964 332 unaligned CONTIG scf965 397 unaligned CONTIG scf966 386 unaligned CONTIG scf967 526 unaligned 64678155 64678658 1 527 NC_000014.9 scf968 95.64 True CONTIG scf968 527 correct CONTIG scf969 429 unaligned CONTIG scf970 386 unaligned CONTIG scf971 375 unaligned CONTIG scf972 335 unaligned CONTIG scf973 334 unaligned CONTIG scf974 437 unaligned CONTIG scf975 402 unaligned CONTIG scf976 334 unaligned CONTIG scf977 334 unaligned CONTIG scf978 371 unaligned CONTIG scf979 428 unaligned CONTIG scf980 328 unaligned CONTIG scf981 391 unaligned CONTIG scf982 485 unaligned CONTIG scf983 537 unaligned CONTIG scf984 407 unaligned CONTIG scf985 442 unaligned CONTIG scf986 425 unaligned CONTIG scf987 438 unaligned CONTIG scf988 436 unaligned CONTIG scf989 408 unaligned CONTIG scf990 462 unaligned CONTIG scf991 443 unaligned CONTIG scf992 414 unaligned CONTIG scf993 398 unaligned CONTIG scf994 375 unaligned 40321698 40322205 525 1 NC_000014.9 scf995 96.76 True CONTIG scf995 525 correct CONTIG scf996 557 unaligned CONTIG scf997 340 unaligned CONTIG scf998 314 unaligned CONTIG scf999 412 unaligned CONTIG scf1000 379 unaligned CONTIG scf1001 328 unaligned CONTIG scf1002 372 unaligned CONTIG scf1003 442 unaligned CONTIG scf1004 408 unaligned CONTIG scf1005 338 unaligned CONTIG scf1006 553 unaligned CONTIG scf1007 350 unaligned CONTIG scf1008 386 unaligned CONTIG scf1009 384 unaligned CONTIG scf1010 399 unaligned CONTIG scf1011 378 unaligned CONTIG scf1012 302 unaligned CONTIG scf1013 364 unaligned CONTIG scf1014 406 unaligned CONTIG scf1015 380 unaligned CONTIG scf1016 571 unaligned CONTIG scf1017 341 unaligned CONTIG scf1018 400 unaligned CONTIG scf1019 351 unaligned CONTIG scf1020 382 unaligned CONTIG scf1021 370 unaligned CONTIG scf1022 361 unaligned CONTIG scf1023 370 unaligned CONTIG scf1024 339 unaligned CONTIG scf1025 395 unaligned CONTIG scf1026 404 unaligned CONTIG scf1027 362 unaligned CONTIG scf1028 474 unaligned CONTIG scf1029 504 unaligned CONTIG scf1030 357 unaligned CONTIG scf1031 366 unaligned CONTIG scf1032 353 unaligned CONTIG scf1033 375 unaligned CONTIG scf1034 319 unaligned CONTIG scf1035 394 unaligned CONTIG scf1036 318 unaligned CONTIG scf1037 422 unaligned CONTIG scf1038 357 unaligned CONTIG scf1039 350 unaligned CONTIG scf1040 325 unaligned CONTIG scf1041 344 unaligned CONTIG scf1042 650 unaligned CONTIG scf1043 399 unaligned CONTIG scf1044 408 unaligned CONTIG scf1045 499 unaligned CONTIG scf1046 449 unaligned CONTIG scf1047 449 unaligned CONTIG scf1048 333 unaligned CONTIG scf1049 330 unaligned CONTIG scf1050 319 unaligned CONTIG scf1051 383 unaligned CONTIG scf1052 412 unaligned CONTIG scf1053 371 unaligned CONTIG scf1054 374 unaligned CONTIG scf1055 442 unaligned CONTIG scf1056 454 unaligned CONTIG scf1057 348 unaligned CONTIG scf1058 353 unaligned CONTIG scf1059 357 unaligned CONTIG scf1060 309 unaligned CONTIG scf1061 399 unaligned CONTIG scf1062 345 unaligned CONTIG scf1063 333 unaligned CONTIG scf1064 433 unaligned CONTIG scf1065 494 unaligned CONTIG scf1066 393 unaligned CONTIG scf1067 330 unaligned CONTIG scf1068 378 unaligned CONTIG scf1069 360 unaligned CONTIG scf1070 325 unaligned CONTIG scf1071 603 unaligned CONTIG scf1072 298 unaligned CONTIG scf1073 346 unaligned CONTIG scf1074 361 unaligned CONTIG scf1075 381 unaligned CONTIG scf1076 363 unaligned CONTIG scf1077 349 unaligned CONTIG scf1078 329 unaligned CONTIG scf1079 348 unaligned CONTIG scf1080 351 unaligned CONTIG scf1081 335 unaligned CONTIG scf1082 319 unaligned CONTIG scf1083 334 unaligned CONTIG scf1084 381 unaligned CONTIG scf1085 348 unaligned CONTIG scf1086 317 unaligned CONTIG scf1087 321 unaligned CONTIG scf1088 473 unaligned CONTIG scf1089 352 unaligned CONTIG scf1090 294 unaligned CONTIG scf1091 332 unaligned CONTIG scf1092 419 unaligned CONTIG scf1093 313 unaligned CONTIG scf1094 384 unaligned CONTIG scf1095 408 unaligned CONTIG scf1096 455 unaligned CONTIG scf1097 368 unaligned CONTIG scf1098 314 unaligned CONTIG scf1099 298 unaligned CONTIG scf1100 351 unaligned CONTIG scf1101 331 unaligned CONTIG scf1102 497 unaligned CONTIG scf1103 314 unaligned CONTIG scf1104 318 unaligned CONTIG scf1105 337 unaligned CONTIG scf1106 514 unaligned CONTIG scf1107 495 unaligned CONTIG scf1108 512 unaligned CONTIG scf1109 336 unaligned CONTIG scf1110 366 unaligned CONTIG scf1111 342 unaligned CONTIG scf1112 297 unaligned CONTIG scf1113 435 unaligned CONTIG scf1114 469 unaligned CONTIG scf1115 389 unaligned 48573092 48573672 603 5 NC_000014.9 scf1116 96.99 True CONTIG scf1116 603 correct CONTIG scf1117 278 unaligned CONTIG scf1118 365 unaligned 61134989 61135705 748 1 NC_000014.9 scf1119 95.86 True CONTIG scf1119 748 correct CONTIG scf1120 375 unaligned CONTIG scf1121 329 unaligned CONTIG scf1122 386 unaligned CONTIG scf1123 447 unaligned CONTIG scf1124 303 unaligned CONTIG scf1125 307 unaligned CONTIG scf1126 473 unaligned CONTIG scf1127 383 unaligned CONTIG scf1128 356 unaligned CONTIG scf1129 374 unaligned 46509409 46509995 1 601 NC_000014.9 scf1130 97.34 True CONTIG scf1130 601 correct 31638676 31639761 2 1119 NC_000014.9 scf1131 96.96 True CONTIG scf1131 1119 correct CONTIG scf1132 394 unaligned CONTIG scf1133 387 unaligned CONTIG scf1134 287 unaligned CONTIG scf1135 402 unaligned CONTIG scf1136 523 unaligned CONTIG scf1137 365 unaligned CONTIG scf1138 330 unaligned CONTIG scf1139 521 unaligned CONTIG scf1140 392 unaligned CONTIG scf1141 857 unaligned CONTIG scf1142 339 unaligned CONTIG scf1143 468 unaligned CONTIG scf1144 323 unaligned CONTIG scf1145 448 unaligned CONTIG scf1146 336 unaligned CONTIG scf1147 356 unaligned CONTIG scf1148 286 unaligned CONTIG scf1149 279 unaligned CONTIG scf1150 251 unaligned CONTIG scf1151 491 unaligned CONTIG scf1152 380 unaligned CONTIG scf1153 290 unaligned CONTIG scf1154 366 unaligned CONTIG scf1155 324 unaligned CONTIG scf1156 273 unaligned CONTIG scf1157 298 unaligned CONTIG scf1158 320 unaligned 90141888 90142480 607 1 NC_000014.9 scf1159 97.03 True CONTIG scf1159 607 correct CONTIG scf1160 336 unaligned CONTIG scf1161 348 unaligned CONTIG scf1162 282 unaligned CONTIG scf1163 303 unaligned CONTIG scf1164 388 unaligned CONTIG scf1165 312 unaligned CONTIG scf1166 390 unaligned CONTIG scf1167 297 unaligned CONTIG scf1168 313 unaligned CONTIG scf1169 329 unaligned CONTIG scf1170 329 unaligned CONTIG scf1171 319 unaligned CONTIG scf1172 275 unaligned CONTIG scf1173 370 unaligned CONTIG scf1174 354 unaligned CONTIG scf1175 321 unaligned CONTIG scf1176 300 unaligned CONTIG scf1177 351 unaligned CONTIG scf1178 344 unaligned CONTIG scf1179 310 unaligned CONTIG scf1180 459 unaligned CONTIG scf1181 313 unaligned CONTIG scf1182 330 unaligned CONTIG scf1183 293 unaligned CONTIG scf1184 339 unaligned CONTIG scf1185 338 unaligned 73349705 73350300 1 614 NC_000014.9 scf1186 97.07 True CONTIG scf1186 614 correct CONTIG scf1187 315 unaligned CONTIG scf1188 292 unaligned CONTIG scf1189 309 unaligned CONTIG scf1190 312 unaligned CONTIG scf1191 315 unaligned CONTIG scf1192 316 unaligned CONTIG scf1193 349 unaligned CONTIG scf1194 366 unaligned CONTIG scf1195 320 unaligned CONTIG scf1196 345 unaligned CONTIG scf1197 316 unaligned CONTIG scf1198 348 unaligned CONTIG scf1199 352 unaligned CONTIG scf1200 301 unaligned CONTIG scf1201 356 unaligned CONTIG scf1202 427 unaligned CONTIG scf1203 469 unaligned 60077586 60078440 892 1 NC_000014.9 scf1204 95.74 True CONTIG scf1204 892 correct CONTIG scf1205 304 unaligned CONTIG scf1206 262 unaligned CONTIG scf1207 309 unaligned CONTIG scf1208 353 unaligned CONTIG scf1209 343 unaligned CONTIG scf1210 297 unaligned 71876927 71877427 1 501 NC_000014.9 scf1211 100.0 True CONTIG scf1211 1086 correct_unaligned CONTIG scf1212 299 unaligned CONTIG scf1213 351 unaligned CONTIG scf1214 314 unaligned CONTIG scf1215 338 unaligned CONTIG scf1216 262 unaligned CONTIG scf1217 356 unaligned CONTIG scf1218 469 unaligned CONTIG scf1219 474 unaligned CONTIG scf1220 334 unaligned CONTIG scf1221 320 unaligned CONTIG scf1222 344 unaligned CONTIG scf1223 357 unaligned CONTIG scf1224 361 unaligned CONTIG scf1225 349 unaligned CONTIG scf1226 271 unaligned CONTIG scf1227 252 unaligned CONTIG scf1228 299 unaligned CONTIG scf1229 301 unaligned CONTIG scf1230 330 unaligned CONTIG scf1231 285 unaligned CONTIG scf1232 323 unaligned CONTIG scf1233 314 unaligned CONTIG scf1234 303 unaligned CONTIG scf1235 285 unaligned CONTIG scf1236 349 unaligned CONTIG scf1237 354 unaligned CONTIG scf1238 352 unaligned CONTIG scf1239 303 unaligned CONTIG scf1240 328 unaligned CONTIG scf1241 358 unaligned CONTIG scf1242 308 unaligned CONTIG scf1243 411 unaligned CONTIG scf1244 349 unaligned CONTIG scf1245 314 unaligned CONTIG scf1246 327 unaligned CONTIG scf1247 346 unaligned CONTIG scf1248 472 unaligned CONTIG scf1249 304 unaligned CONTIG scf1250 349 unaligned CONTIG scf1251 221 unaligned CONTIG scf1252 298 unaligned CONTIG scf1253 430 unaligned CONTIG scf1254 339 unaligned CONTIG scf1255 287 unaligned CONTIG scf1256 287 unaligned CONTIG scf1257 316 unaligned CONTIG scf1258 324 unaligned CONTIG scf1259 287 unaligned CONTIG scf1260 353 unaligned CONTIG scf1261 276 unaligned CONTIG scf1262 336 unaligned CONTIG scf1263 346 unaligned CONTIG scf1264 253 unaligned CONTIG scf1265 432 unaligned CONTIG scf1266 304 unaligned CONTIG scf1267 316 unaligned CONTIG scf1268 292 unaligned CONTIG scf1269 297 unaligned CONTIG scf1270 312 unaligned CONTIG scf1271 332 unaligned CONTIG scf1272 336 unaligned CONTIG scf1273 409 unaligned CONTIG scf1274 570 unaligned CONTIG scf1275 293 unaligned CONTIG scf1276 356 unaligned CONTIG scf1277 352 unaligned CONTIG scf1278 299 unaligned CONTIG scf1279 332 unaligned CONTIG scf1280 338 unaligned CONTIG scf1281 324 unaligned CONTIG scf1282 304 unaligned CONTIG scf1283 314 unaligned CONTIG scf1284 288 unaligned CONTIG scf1285 350 unaligned CONTIG scf1286 316 unaligned CONTIG scf1287 337 unaligned CONTIG scf1288 323 unaligned CONTIG scf1289 235 unaligned CONTIG scf1290 309 unaligned CONTIG scf1291 307 unaligned CONTIG scf1292 416 unaligned CONTIG scf1293 338 unaligned CONTIG scf1294 275 unaligned CONTIG scf1295 502 unaligned CONTIG scf1296 284 unaligned CONTIG scf1297 291 unaligned CONTIG scf1298 310 unaligned CONTIG scf1299 282 unaligned CONTIG scf1300 306 unaligned CONTIG scf1301 342 unaligned CONTIG scf1302 336 unaligned CONTIG scf1303 378 unaligned CONTIG scf1304 335 unaligned 85902802 85903712 1 948 NC_000014.9 scf1305 96.1 True CONTIG scf1305 948 correct CONTIG scf1306 341 unaligned CONTIG scf1307 734 unaligned CONTIG scf1308 484 unaligned CONTIG scf1309 298 unaligned CONTIG scf1310 344 unaligned CONTIG scf1311 323 unaligned CONTIG scf1312 311 unaligned CONTIG scf1313 282 unaligned CONTIG scf1314 335 unaligned CONTIG scf1315 314 unaligned CONTIG scf1316 343 unaligned CONTIG scf1317 310 unaligned CONTIG scf1318 345 unaligned CONTIG scf1319 346 unaligned CONTIG scf1320 260 unaligned CONTIG scf1321 453 unaligned CONTIG scf1322 295 unaligned CONTIG scf1323 264 unaligned CONTIG scf1324 334 unaligned CONTIG scf1325 266 unaligned CONTIG scf1326 310 unaligned CONTIG scf1327 299 unaligned CONTIG scf1328 236 unaligned CONTIG scf1329 423 unaligned CONTIG scf1330 306 unaligned CONTIG scf1331 327 unaligned CONTIG scf1332 335 unaligned CONTIG scf1333 403 unaligned CONTIG scf1334 371 unaligned CONTIG scf1335 301 unaligned CONTIG scf1336 282 unaligned CONTIG scf1337 328 unaligned CONTIG scf1338 295 unaligned CONTIG scf1339 217 unaligned CONTIG scf1340 317 unaligned CONTIG scf1341 325 unaligned CONTIG scf1342 294 unaligned CONTIG scf1343 305 unaligned CONTIG scf1344 272 unaligned CONTIG scf1345 284 unaligned CONTIG scf1346 335 unaligned CONTIG scf1347 275 unaligned CONTIG scf1348 317 unaligned CONTIG scf1349 320 unaligned CONTIG scf1350 311 unaligned CONTIG scf1351 337 unaligned CONTIG scf1352 317 unaligned CONTIG scf1353 338 unaligned CONTIG scf1354 326 unaligned CONTIG scf1355 307 unaligned CONTIG scf1356 276 unaligned CONTIG scf1357 313 unaligned CONTIG scf1358 415 unaligned CONTIG scf1359 278 unaligned CONTIG scf1360 333 unaligned CONTIG scf1361 277 unaligned CONTIG scf1362 215 unaligned CONTIG scf1363 260 unaligned CONTIG scf1364 294 unaligned CONTIG scf1365 278 unaligned CONTIG scf1366 265 unaligned CONTIG scf1367 273 unaligned CONTIG scf1368 301 unaligned CONTIG scf1369 318 unaligned CONTIG scf1370 272 unaligned CONTIG scf1371 333 unaligned CONTIG scf1372 287 unaligned CONTIG scf1373 271 unaligned CONTIG scf1374 306 unaligned CONTIG scf1375 325 unaligned CONTIG scf1376 279 unaligned CONTIG scf1377 206 unaligned CONTIG scf1378 330 unaligned CONTIG scf1379 318 unaligned CONTIG scf1380 276 unaligned CONTIG scf1381 282 unaligned CONTIG scf1382 455 unaligned CONTIG scf1383 238 unaligned CONTIG scf1384 329 unaligned CONTIG scf1385 293 unaligned CONTIG scf1386 292 unaligned CONTIG scf1387 301 unaligned CONTIG scf1388 307 unaligned CONTIG scf1389 405 unaligned CONTIG scf1390 298 unaligned CONTIG scf1391 271 unaligned CONTIG scf1392 270 unaligned CONTIG scf1393 286 unaligned CONTIG scf1394 281 unaligned CONTIG scf1395 298 unaligned CONTIG scf1396 317 unaligned CONTIG scf1397 291 unaligned CONTIG scf1398 269 unaligned CONTIG scf1399 269 unaligned CONTIG scf1400 287 unaligned CONTIG scf1401 413 unaligned CONTIG scf1402 259 unaligned CONTIG scf1403 281 unaligned CONTIG scf1404 376 unaligned CONTIG scf1405 405 unaligned CONTIG scf1406 269 unaligned CONTIG scf1407 308 unaligned CONTIG scf1408 321 unaligned 42958889 42967667 8786 1 NC_000014.9 scf1409 99.78 True CONTIG scf1409 8786 correct CONTIG scf1410 275 unaligned CONTIG scf1411 313 unaligned CONTIG scf1412 283 unaligned CONTIG scf1413 281 unaligned CONTIG scf1414 304 unaligned CONTIG scf1415 261 unaligned CONTIG scf1416 273 unaligned CONTIG scf1417 373 unaligned CONTIG scf1418 308 unaligned CONTIG scf1419 288 unaligned CONTIG scf1420 285 unaligned CONTIG scf1421 433 unaligned CONTIG scf1422 292 unaligned CONTIG scf1423 271 unaligned CONTIG scf1424 272 unaligned CONTIG scf1425 303 unaligned CONTIG scf1426 303 unaligned CONTIG scf1427 386 unaligned CONTIG scf1428 261 unaligned 41910689 41911251 579 1 NC_000014.9 scf1429 97.06 True CONTIG scf1429 579 correct CONTIG scf1430 299 unaligned CONTIG scf1431 287 unaligned CONTIG scf1432 331 unaligned CONTIG scf1433 294 unaligned CONTIG scf1434 281 unaligned CONTIG scf1435 310 unaligned CONTIG scf1436 244 unaligned CONTIG scf1437 282 unaligned CONTIG scf1438 331 unaligned CONTIG scf1439 282 unaligned CONTIG scf1440 370 unaligned CONTIG scf1441 828 unaligned CONTIG scf1442 306 unaligned CONTIG scf1443 273 unaligned CONTIG scf1444 399 unaligned 41540761 41541315 1 572 NC_000014.9 scf1445 96.68 True CONTIG scf1445 572 correct CONTIG scf1446 358 unaligned CONTIG scf1447 610 unaligned CONTIG scf1448 410 unaligned CONTIG scf1449 276 unaligned CONTIG scf1450 269 unaligned CONTIG scf1451 444 unaligned CONTIG scf1452 308 unaligned CONTIG scf1453 288 unaligned CONTIG scf1454 308 unaligned CONTIG scf1455 257 unaligned CONTIG scf1456 296 unaligned CONTIG scf1457 258 unaligned CONTIG scf1458 316 unaligned CONTIG scf1459 398 unaligned CONTIG scf1460 301 unaligned CONTIG scf1461 407 unaligned CONTIG scf1462 290 unaligned CONTIG scf1463 270 unaligned CONTIG scf1464 266 unaligned CONTIG scf1465 273 unaligned CONTIG scf1466 264 unaligned CONTIG scf1467 285 unaligned CONTIG scf1468 253 unaligned CONTIG scf1469 273 unaligned CONTIG scf1470 221 unaligned CONTIG scf1471 304 unaligned CONTIG scf1472 284 unaligned CONTIG scf1473 283 unaligned CONTIG scf1474 398 unaligned CONTIG scf1475 293 unaligned CONTIG scf1476 252 unaligned CONTIG scf1477 423 unaligned CONTIG scf1478 282 unaligned CONTIG scf1479 302 unaligned CONTIG scf1480 309 unaligned CONTIG scf1481 273 unaligned CONTIG scf1482 222 unaligned CONTIG scf1483 277 unaligned CONTIG scf1484 299 unaligned CONTIG scf1485 277 unaligned CONTIG scf1486 252 unaligned 105431815 105432527 5 726 NC_000014.9 scf1487 98.75 True CONTIG scf1487 726 correct CONTIG scf1488 418 unaligned CONTIG scf1489 271 unaligned CONTIG scf1490 252 unaligned CONTIG scf1491 264 unaligned CONTIG scf1492 287 unaligned CONTIG scf1493 283 unaligned CONTIG scf1494 214 unaligned CONTIG scf1495 377 unaligned CONTIG scf1496 237 unaligned CONTIG scf1497 289 unaligned CONTIG scf1498 252 unaligned CONTIG scf1499 290 unaligned CONTIG scf1500 253 unaligned CONTIG scf1501 255 unaligned CONTIG scf1502 290 unaligned CONTIG scf1503 256 unaligned CONTIG scf1504 243 unaligned CONTIG scf1505 262 unaligned CONTIG scf1506 252 unaligned CONTIG scf1507 494 unaligned CONTIG scf1508 265 unaligned CONTIG scf1509 300 unaligned CONTIG scf1510 263 unaligned CONTIG scf1511 227 unaligned CONTIG scf1512 256 unaligned CONTIG scf1513 272 unaligned CONTIG scf1514 275 unaligned CONTIG scf1515 266 unaligned CONTIG scf1516 279 unaligned CONTIG scf1517 284 unaligned CONTIG scf1518 249 unaligned CONTIG scf1519 415 unaligned 74625193 74625787 1 616 NC_000014.9 scf1520 96.43 True CONTIG scf1520 616 correct CONTIG scf1521 282 unaligned CONTIG scf1522 316 unaligned CONTIG scf1523 287 unaligned CONTIG scf1524 242 unaligned CONTIG scf1525 274 unaligned CONTIG scf1526 298 unaligned CONTIG scf1527 241 unaligned CONTIG scf1528 236 unaligned CONTIG scf1529 499 unaligned CONTIG scf1530 282 unaligned CONTIG scf1531 250 unaligned CONTIG scf1532 244 unaligned CONTIG scf1533 276 unaligned CONTIG scf1534 283 unaligned CONTIG scf1535 240 unaligned CONTIG scf1536 243 unaligned CONTIG scf1537 457 unaligned CONTIG scf1538 267 unaligned CONTIG scf1539 257 unaligned CONTIG scf1540 254 unaligned CONTIG scf1541 265 unaligned CONTIG scf1542 257 unaligned 28435014 28435505 18 523 NC_000014.9 scf1543 95.07 True CONTIG scf1543 523 correct CONTIG scf1544 277 unaligned CONTIG scf1545 253 unaligned CONTIG scf1546 315 unaligned CONTIG scf1547 269 unaligned CONTIG scf1548 255 unaligned CONTIG scf1549 257 unaligned CONTIG scf1550 393 unaligned CONTIG scf1551 217 unaligned CONTIG scf1552 243 unaligned CONTIG scf1553 240 unaligned CONTIG scf1554 247 unaligned CONTIG scf1555 325 unaligned CONTIG scf1556 266 unaligned CONTIG scf1557 265 unaligned CONTIG scf1558 405 unaligned CONTIG scf1559 252 unaligned CONTIG scf1560 249 unaligned CONTIG scf1561 227 unaligned CONTIG scf1562 247 unaligned CONTIG scf1563 245 unaligned CONTIG scf1564 258 unaligned CONTIG scf1565 266 unaligned CONTIG scf1566 260 unaligned CONTIG scf1567 246 unaligned CONTIG scf1568 238 unaligned CONTIG scf1569 462 unaligned CONTIG scf1570 242 unaligned CONTIG scf1571 238 unaligned CONTIG scf1572 247 unaligned 70424930 70425432 19 532 NC_000014.9 scf1573 97.28 True CONTIG scf1573 532 correct CONTIG scf1574 419 unaligned CONTIG scf1575 245 unaligned CONTIG scf1576 229 unaligned CONTIG scf1577 251 unaligned CONTIG scf1578 264 unaligned CONTIG scf1579 337 unaligned CONTIG scf1580 388 unaligned CONTIG scf1581 258 unaligned CONTIG scf1582 247 unaligned CONTIG scf1583 492 unaligned CONTIG scf1584 459 unaligned CONTIG scf1585 263 unaligned CONTIG scf1586 252 unaligned CONTIG scf1587 248 unaligned CONTIG scf1588 245 unaligned 101790096 101790837 756 1 NC_000014.9 scf1589 98.15 True CONTIG scf1589 756 correct CONTIG scf1590 479 unaligned CONTIG scf1591 371 unaligned CONTIG scf1592 251 unaligned CONTIG scf1593 434 unaligned CONTIG scf1594 234 unaligned CONTIG scf1595 254 unaligned CONTIG scf1596 258 unaligned CONTIG scf1597 258 unaligned CONTIG scf1598 218 unaligned CONTIG scf1599 244 unaligned CONTIG scf1600 399 unaligned CONTIG scf1601 250 unaligned CONTIG scf1602 236 unaligned CONTIG scf1603 239 unaligned CONTIG scf1604 742 unaligned CONTIG scf1605 430 unaligned CONTIG scf1606 422 unaligned CONTIG scf1607 315 unaligned CONTIG scf1608 212 unaligned CONTIG scf1609 234 unaligned CONTIG scf1610 246 unaligned CONTIG scf1611 232 unaligned CONTIG scf1612 494 unaligned CONTIG scf1613 253 unaligned CONTIG scf1614 220 unaligned CONTIG scf1615 249 unaligned CONTIG scf1616 241 unaligned CONTIG scf1617 228 unaligned CONTIG scf1618 446 unaligned CONTIG scf1619 227 unaligned CONTIG scf1620 230 unaligned CONTIG scf1621 234 unaligned CONTIG scf1622 224 unaligned CONTIG scf1623 266 unaligned CONTIG scf1624 254 unaligned CONTIG scf1625 221 unaligned CONTIG scf1626 241 unaligned CONTIG scf1627 232 unaligned CONTIG scf1628 229 unaligned CONTIG scf1629 479 unaligned CONTIG scf1630 230 unaligned CONTIG scf1631 211 unaligned CONTIG scf1632 241 unaligned 99987442 99987937 512 1 NC_000014.9 scf1633 96.88 True CONTIG scf1633 512 correct CONTIG scf1634 295 unaligned CONTIG scf1635 233 unaligned CONTIG scf1636 218 unaligned CONTIG scf1637 1027 unaligned CONTIG scf1638 229 unaligned CONTIG scf1639 252 unaligned CONTIG scf1640 289 unaligned CONTIG scf1641 218 unaligned 103800444 103801050 618 1 NC_000014.9 scf1642 97.9 True CONTIG scf1642 618 correct CONTIG scf1643 216 unaligned CONTIG scf1644 465 unaligned CONTIG scf1645 286 unaligned CONTIG scf1646 345 unaligned CONTIG scf1647 210 unaligned CONTIG scf1648 214 unaligned CONTIG scf1649 220 unaligned CONTIG scf1650 246 unaligned CONTIG scf1651 311 unaligned CONTIG scf1652 225 unaligned CONTIG scf1653 350 unaligned CONTIG scf1654 433 unaligned CONTIG scf1655 249 unaligned CONTIG scf1656 434 unaligned CONTIG scf1657 419 unaligned CONTIG scf1658 292 unaligned 20619589 20620232 1 654 NC_000014.9 scf1659 97.56 True CONTIG scf1659 654 correct CONTIG scf1660 342 unaligned CONTIG scf1661 347 unaligned CONTIG scf1662 218 unaligned CONTIG scf1663 331 unaligned CONTIG scf1664 435 unaligned CONTIG scf1665 386 unaligned CONTIG scf1666 265 unaligned CONTIG scf1667 292 unaligned CONTIG scf1668 275 unaligned CONTIG scf1669 385 unaligned 105659517 105661495 1 1979 NC_000014.9 100060 99.8 True CONTIG 100060 1979 correct 105569361 105571169 1813 1 NC_000014.9 100568 99.06 True CONTIG 100568 1813 correct 95253806 95260255 6450 1 NC_000014.9 100953 100.0 True CONTIG 100953 6450 correct 103081525 103082625 1128 20 NC_000014.9 101483 99.19 True CONTIG 101483 1128 correct 39632079 39633514 1447 12 NC_000014.9 102441 99.93 True CONTIG 102441 1447 correct 44737095 44738479 54 1436 NC_000014.9 102620 99.71 True CONTIG 102620 1436 correct 34560618 34562448 1831 1 NC_000014.9 103152 100.0 True CONTIG 103152 1831 correct 81459055 81460679 1625 1 NC_000014.9 104632 99.69 True CONTIG 104632 1625 correct 23983714 23984756 1 1043 NC_000014.9 106577 100.0 True CONTIG 106577 1043 correct 95972177 95973197 1 1017 NC_000014.9 111407 99.41 True CONTIG 111407 1017 correct 55438961 55439694 332 1065 NC_000014.9 112611 99.86 True CONTIG 112611 1065 correct 23963165 23964211 1 1047 NC_000014.9 114149 99.9 True CONTIG 114149 1047 correct 104978507 104980147 1 1641 NC_000014.9 114858 100.0 True CONTIG 114858 1641 correct 19225464 19229937 4476 1 NC_000014.9 118430 99.55 True CONTIG 118430 4476 correct 20945701 20947897 1 2198 NC_000014.9 124838 99.86 True CONTIG 124838 2198 correct 19365293 19367069 1777 1 NC_000014.9 124903 99.94 True CONTIG 124903 1777 correct 19362829 19364080 1252 1 NC_000014.9 124905 99.76 True CONTIG 124905 1252 correct 19038979 19041593 1 2615 NC_000014.9 124914 99.92 True CONTIG 124914 2615 correct 19046887 19047938 1 1052 NC_000014.9 124933 99.9 True CONTIG 124933 1055 correct 19344487 19345848 1362 1 NC_000014.9 124949 99.85 True CONTIG 124949 1362 correct 69838598 69839849 1271 2 NC_000014.9 124996 98.58 True CONTIG 124996 1271 correct 19444378 19445871 1 1494 NC_000014.9 125045 99.87 True CONTIG 125045 1494 correct 19446643 19447888 1 1246 NC_000014.9 125050 100.0 True CONTIG 125050 1246 correct 19461284 19463053 1 1770 NC_000014.9 125094 99.77 True CONTIG 125094 1770 correct 18937193 18938372 1180 1 NC_000014.9 125096 99.92 True CONTIG 125096 1180 correct 18934607 18935910 1303 1 NC_000014.9 125104 99.85 True CONTIG 125104 1303 correct 18923532 18925071 1 1540 NC_000014.9 125167 99.87 True CONTIG 125167 1540 correct 19417247 19418462 1 1216 NC_000014.9 125197 99.75 True CONTIG 125197 1216 correct 18976234 18977256 1023 1 NC_000014.9 125208 99.51 True CONTIG 125208 1023 correct 18975154 18976254 1101 1 NC_000014.9 125211 99.55 True CONTIG 125211 1101 correct 19427228 19428760 1 1533 NC_000014.9 125214 99.74 True CONTIG 125214 1533 correct 18879568 18880729 1 1162 NC_000014.9 125532 100.0 True CONTIG 125532 1162 correct 19637103 19638706 1603 1 NC_000014.9 125536 99.81 True CONTIG 125536 1603 correct 106363040 106364175 33 1168 NC_000014.9 125613 99.47 True CONTIG 125613 1168 correct 105671126 105672733 1 1607 NC_000014.9 125628 99.63 True CONTIG 125628 1607 correct 94889221 94890698 1 1490 NC_000014.9 125998 98.93 True CONTIG 125998 1490 correct 18304962 18306494 1533 1 NC_000014.9 126010 99.93 True CONTIG 126010 1533 correct 19396450 19397513 1 1064 NC_000014.9 126049 99.53 True CONTIG 126049 1064 correct 18996783 18997904 1122 1 NC_000014.9 126070 99.91 True CONTIG 126070 1122 correct 18987772 18989957 2186 1 NC_000014.9 126085 99.91 True CONTIG 126085 2186 correct 56236325 56237420 1096 1 NC_000014.9 126159 99.18 True CONTIG 126159 1096 correct 18301044 18303348 1 2305 NC_000014.9 126422 99.83 True CONTIG 126422 2305 correct 65817847 65818891 1047 1 NC_000014.9 126429 99.52 True CONTIG 126429 1047 correct 18611601 18613073 1473 1 NC_000014.9 126474 99.93 True CONTIG 126474 1473 correct 18225528 18226991 1 1464 NC_000014.9 126501 100.0 True CONTIG 126501 1464 correct 19280953 19282822 1870 1 NC_000014.9 126605 99.63 True CONTIG 126605 1870 correct 19480182 19481459 1 1280 NC_000014.9 126653 99.77 True CONTIG 126653 1280 correct 24022545 24023566 1023 2 NC_000014.9 127010 100.0 True CONTIG 127010 1023 correct 19112280 19113699 1420 1 NC_000014.9 127184 99.58 True CONTIG 127184 1420 correct 19290385 19291442 1 1058 NC_000014.9 127202 99.91 True CONTIG 127202 1058 correct 19684912 19686008 1 1097 NC_000014.9 127239 99.82 True CONTIG 127239 1097 correct 19611806 19613432 1627 1 NC_000014.9 128013 99.94 True CONTIG 128013 1627 correct 19489162 19490184 1023 1 NC_000014.9 128024 99.8 True CONTIG 128024 1023 correct 18335251 18338036 1 2786 NC_000014.9 128081 99.96 True CONTIG 128081 2786 correct 18339784 18341747 1 1964 NC_000014.9 128082 99.95 True CONTIG 128082 1964 correct 18341648 18347701 1 6054 NC_000014.9 128083 99.93 True CONTIG 128083 6054 correct 19147256 19149224 1 1969 NC_000014.9 128428 99.64 True CONTIG 128428 1969 correct 18904711 18906194 1484 1 NC_000014.9 128464 99.6 True CONTIG 128464 1484 correct 19497507 19498535 1 1029 NC_000014.9 128466 99.81 True CONTIG 128466 1029 correct 19501372 19502784 1 1413 NC_000014.9 128475 99.79 True CONTIG 128475 1413 correct 19121534 19122867 1335 1 NC_000014.9 128592 99.7 True CONTIG 128592 1335 correct 19292399 19293727 1 1329 NC_000014.9 130145 99.4 True CONTIG 130145 1339 correct 105696365 105697768 1404 1 NC_000014.9 130276 99.86 True CONTIG 130276 1404 correct 105575463 105576396 67 1000 NC_000014.9 130277 99.79 True CONTIG 130277 1000 correct 105694170 105695322 1153 1 NC_000014.9 130281 100.0 True CONTIG 130281 1153 correct 105616363 105617808 1446 1 NC_000014.9 130426 99.24 True CONTIG 130426 1791 correct 19139695 19140692 1013 11 NC_000014.9 130845 99.1 True CONTIG 130845 1013 correct 19260477 19261529 1 1053 NC_000014.9 130847 99.62 True CONTIG 130847 1053 correct 19261431 19262520 1 1090 NC_000014.9 130848 99.72 True CONTIG 130848 1090 correct 19263574 19264785 1 1212 NC_000014.9 130851 100.0 True CONTIG 130851 1212 correct 18316703 18318328 1626 1 NC_000014.9 131058 99.94 True CONTIG 131058 1626 correct 18314491 18315511 1021 1 NC_000014.9 131062 99.9 True CONTIG 131062 1021 correct 105581268 105582136 869 1 NC_000014.9 131213 99.54 True CONTIG 131213 1026 correct 19154909 19156479 1 1571 NC_000014.9 131604 99.62 True CONTIG 131604 1571 correct 19157624 19158640 1 1015 NC_000014.9 131610 99.51 True CONTIG 131610 1015 correct 18307930 18309383 1454 1 NC_000014.9 131802 100.0 True CONTIG 131802 1454 correct 19044502 19045802 1 1301 NC_000014.9 132186 100.0 True CONTIG 132186 1301 correct 19474891 19476842 1952 1 NC_000014.9 132251 99.9 True CONTIG 132251 1952 correct 18977158 18978865 1706 1 NC_000014.9 132268 99.82 True CONTIG 132268 1706 correct 19429958 19431449 1 1492 NC_000014.9 132272 99.93 True CONTIG 132272 1492 correct 19400021 19401766 1 1746 NC_000014.9 132430 99.94 True CONTIG 132430 1746 correct 19324267 19325516 1 1250 NC_000014.9 132487 99.92 True CONTIG 132487 1250 correct 19073118 19074383 1266 1 NC_000014.9 132490 99.92 True CONTIG 132490 1266 correct 19282866 19284032 1167 1 NC_000014.9 132537 100.0 True CONTIG 132537 1167 correct 18918657 18919790 1134 1 NC_000014.9 132545 99.82 True CONTIG 132545 1134 correct 19681843 19683461 1 1619 NC_000014.9 132565 99.88 True CONTIG 132565 1619 correct 18322690 18324391 1 1701 NC_000014.9 132609 99.88 True CONTIG 132609 1701 correct 18338090 18339881 1 1792 NC_000014.9 132796 100.0 True CONTIG 132796 1792 correct 19253095 19254164 1070 1 NC_000014.9 132860 99.81 True CONTIG 132860 1070 correct 105654769 105655776 1008 1 NC_000014.9 132939 99.7 True CONTIG 132939 1008 correct 19083078 19084585 1508 1 NC_000014.9 132974 99.93 True CONTIG 132974 1508 correct 18328272 18330901 2630 1 NC_000014.9 132979 99.96 True CONTIG 132979 2630 correct 19305285 19306734 1450 1 NC_000014.9 133103 99.93 True CONTIG 133103 1450 correct 105566099 105567277 1 1179 NC_000014.9 133137 99.75 True CONTIG 133137 1179 correct 19266340 19267808 1 1469 NC_000014.9 133229 99.73 True CONTIG 133229 1469 correct 18940599 18941716 1118 1 NC_000014.9 133394 99.91 True CONTIG 133394 1118 correct 18227658 18228914 1 1257 NC_000014.9 133423 100.0 True CONTIG 133423 1257 correct 18331151 18332501 1351 1 NC_000014.9 133469 100.0 True CONTIG 133469 1377 correct 18600049 18601063 1 1015 NC_000014.9 133559 99.8 True CONTIG 133559 1015 correct 19695011 19696968 1 1958 NC_000014.9 133567 100.0 True CONTIG 133567 1958 correct 94362066 94363743 1 1666 NC_000014.9 22672 98.28 True CONTIG 22672 1672 correct 104231893 104233709 52 1868 NC_000014.9 45723 99.94 True CONTIG 45723 1868 correct 52254733 52255522 790 1 NC_000014.9 49337 100.0 True CONTIG 49337 1215 correct 73533310 73534428 1 1118 NC_000014.9 54561 99.73 True CONTIG 54561 1118 correct 73575994 73577043 1073 8 NC_000014.9 63960 98.22 True CONTIG 63960 1073 correct 34544078 34545173 1 1096 NC_000014.9 67409 100.0 True CONTIG 67409 1108 correct 18224148 18225571 1 1424 NC_000014.9 68150 99.79 True CONTIG 68150 1424 correct 18231767 18232887 1 1121 NC_000014.9 68152 99.82 True CONTIG 68152 1121 correct 43257549 43262478 1 4930 NC_000014.9 69421 99.96 True CONTIG 69421 4930 correct 18320135 18322187 1 2053 NC_000014.9 71378 99.95 True CONTIG 71378 2055 correct 76494456 76495636 1182 1 NC_000014.9 76950 99.75 True CONTIG 76950 1182 correct 60611661 60613248 1 1588 NC_000014.9 77140 99.94 True CONTIG 77140 1588 correct 68899041 68901262 1 2222 NC_000014.9 77416 99.95 True CONTIG 77416 2222 correct 105635384 105637465 1 2022 NC_000014.9 78189 96.97 True CONTIG 78189 2022 correct 102920020 102921578 1 1559 NC_000014.9 83308 100.0 True CONTIG 83308 1559 correct 35973514 35974591 1 1078 NC_000014.9 90427 100.0 True CONTIG 90427 1078 correct 64685436 64686845 1410 1 NC_000014.9 91466 99.86 True CONTIG 91466 1410 correct 101570303 101572019 1717 1 NC_000014.9 92705 100.0 True CONTIG 92705 1748 correct 61007024 61008408 1 1407 NC_000014.9 92974 97.94 True CONTIG 92974 1407 correct 61008317 61009699 1 1383 NC_000014.9 92975 99.93 True CONTIG 92975 1383 correct 43510500 43511600 1 1103 NC_000014.9 94568 99.82 True CONTIG 94568 1103 correct 105577475 105578671 1197 1 NC_000014.9 94681 100.0 True CONTIG 94681 1197 correct 105562569 105564125 1 1557 NC_000014.9 99893 100.0 True CONTIG 99893 1557 correct