S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 59 2476 51 2470 NC_060925.1 CM021568.2 97.81 True local misassembly 3697 7469 3749 7521 NC_060925.1 CM021568.2 99.6 True indel: indel (<= 5bp) 7470 8942 7523 8995 NC_060925.1 CM021568.2 99.66 True local misassembly 9512 12565 9566 12619 NC_060925.1 CM021568.2 99.15 True indel: indel (<= 5bp) 12604 15569 12657 15622 NC_060925.1 CM021568.2 98.95 True indel: indel (<= 5bp) 15570 16182 15624 16236 NC_060925.1 CM021568.2 99.18 True indel: indel (> 5bp) 16195 16760 16237 16802 NC_060925.1 CM021568.2 99.12 True indel: indel (<= 5bp) 16764 17296 16803 17335 NC_060925.1 CM021568.2 99.06 True indel: indel (> 5bp) 17635 23003 17668 23036 NC_060925.1 CM021568.2 99.09 True indel: indel (> 5bp) 23396 24010 23435 24049 NC_060925.1 CM021568.2 99.35 True local misassembly 24250 26493 24426 26669 NC_060925.1 CM021568.2 97.37 True indel: indel (<= 5bp) 26872 27951 27051 28130 NC_060925.1 CM021568.2 99.26 True local misassembly 27952 29156 28630 29834 NC_060925.1 CM021568.2 99.59 True indel: indel (> 5bp) 29293 32388 30035 33130 NC_060925.1 CM021568.2 99.64 True indel: indel (> 5bp) 32397 33802 33131 34536 NC_060925.1 CM021568.2 99.08 True indel: indel (<= 5bp) 33808 36631 34537 37360 NC_060925.1 CM021568.2 99.65 True local misassembly 36632 37637 38237 39242 NC_060925.1 CM021568.2 99.2 True local misassembly 37638 43595 39969 45926 NC_060925.1 CM021568.2 99.7 True indel: indel (<= 5bp) 43931 49274 46264 51607 NC_060925.1 CM021568.2 99.57 True indel: indel (<= 5bp) 49279 50116 51608 52445 NC_060925.1 CM021568.2 99.76 True indel: indel (> 5bp) 50117 52115 52454 54452 NC_060925.1 CM021568.2 99.7 True indel: stretch of mismatches 52381 53635 54718 55972 NC_060925.1 CM021568.2 99.92 True indel: indel (<= 5bp) 53640 54658 55973 56991 NC_060925.1 CM021568.2 99.9 True local misassembly 54659 58492 62865 66698 NC_060925.1 CM021568.2 99.66 True indel: indel (<= 5bp) 58502 59560 66706 67764 NC_060925.1 CM021568.2 99.72 True indel: indel (<= 5bp) 59562 63015 67765 71218 NC_060925.1 CM021568.2 99.8 True indel: indel (<= 5bp) 63016 64983 71222 73189 NC_060925.1 CM021568.2 99.85 True indel: indel (<= 5bp) 65002 65977 73209 74184 NC_060925.1 CM021568.2 99.59 True indel: indel (<= 5bp) 65978 67217 74186 75425 NC_060925.1 CM021568.2 99.68 True indel: indel (<= 5bp) 67561 70106 75774 78319 NC_060925.1 CM021568.2 99.84 True indel: indel (> 5bp) 70107 73464 78326 81683 NC_060925.1 CM021568.2 99.7 True indel: indel (> 5bp) 73465 75084 81690 83309 NC_060925.1 CM021568.2 99.81 True indel: indel (<= 5bp) 75085 82172 83312 90399 NC_060925.1 CM021568.2 99.7 True indel: indel (<= 5bp) 82355 85867 90585 94097 NC_060925.1 CM021568.2 99.49 True indel: indel (<= 5bp) 85868 87599 94099 95830 NC_060925.1 CM021568.2 99.54 True local misassembly 91955 93324 96438 97807 NC_060925.1 CM021568.2 97.59 True local misassembly 96677 97597 98622 99542 NC_060925.1 CM021568.2 98.7 True indel: indel (<= 5bp) 97599 98108 99543 100052 NC_060925.1 CM021568.2 97.25 True indel: indel (<= 5bp) 98531 99959 100477 101905 NC_060925.1 CM021568.2 98.39 True indel: indel (<= 5bp) 100376 101052 102323 102999 NC_060925.1 CM021568.2 98.82 True indel: indel (<= 5bp) 101056 102540 103000 104484 NC_060925.1 CM021568.2 99.06 True indel: indel (<= 5bp) 102541 104375 104487 106321 NC_060925.1 CM021568.2 98.47 True indel: indel (<= 5bp) 104775 105631 106719 107575 NC_060925.1 CM021568.2 99.42 True indel: indel (<= 5bp) 105944 110781 107886 112723 NC_060925.1 CM021568.2 98.97 True indel: indel (<= 5bp) 110782 112498 112728 114444 NC_060925.1 CM021568.2 99.07 True indel: indel (<= 5bp) 112499 113335 114446 115282 NC_060925.1 CM021568.2 99.4 True indel: indel (<= 5bp) 113680 114487 115628 116435 NC_060925.1 CM021568.2 99.5 True indel: indel (<= 5bp) 114488 116313 116437 118262 NC_060925.1 CM021568.2 99.78 True indel: indel (<= 5bp) 116315 137093 118263 139041 NC_060925.1 CM021568.2 99.94 True indel: indel (> 5bp) 137109 138791 139042 140724 NC_060925.1 CM021568.2 100.0 True indel: indel (<= 5bp) 138792 144195 140726 146129 NC_060925.1 CM021568.2 99.96 True indel: indel (<= 5bp) 144197 147169 146130 149102 NC_060925.1 CM021568.2 99.97 True indel: indel (<= 5bp) 147172 171376 149103 173307 NC_060925.1 CM021568.2 99.93 True indel: indel (> 5bp) 171383 183948 173308 185873 NC_060925.1 CM021568.2 99.94 True indel: indel (<= 5bp) 183949 185989 185875 187915 NC_060925.1 CM021568.2 99.9 True indel: indel (> 5bp) 185996 202377 187916 204297 NC_060925.1 CM021568.2 99.97 True indel: indel (<= 5bp) 202378 216352 204299 218273 NC_060925.1 CM021568.2 99.99 True indel: indel (> 5bp) 216658 861967 218572 863082 NC_060925.1 CM021568.2 98.13 True indel: indel (> 5bp) 862283 1040045 863358 1041126 NC_060925.1 CM021568.2 99.88 True indel: indel (> 5bp) 1040179 1556931 1041220 1558808 NC_060925.1 CM021568.2 99.34 True local misassembly 1559169 1761047 1561744 1762029 NC_060925.1 CM021568.2 99.0 True local misassembly 1764138 1924872 1765352 1925820 NC_060925.1 CM021568.2 99.26 True indel: indel (> 5bp) 1924863 2096829 1925854 2097937 NC_060925.1 CM021568.2 99.33 True local misassembly 2097620 2195461 2098725 2196497 NC_060925.1 CM021568.2 99.57 True indel: indel (> 5bp) 2195834 2196394 2196818 2197378 NC_060925.1 CM021568.2 97.33 True local misassembly 2198497 2223810 2199398 2224881 NC_060925.1 CM021568.2 98.91 True indel: indel (> 5bp) 2224026 2276249 2225060 2277282 NC_060925.1 CM021568.2 99.71 True indel: indel (<= 5bp) 2276670 2684348 2277700 2685349 NC_060925.1 CM021568.2 99.24 True local misassembly 2684690 2982842 2686353 2983956 NC_060925.1 CM021568.2 99.29 True local misassembly 2983497 3611184 2984474 3611555 NC_060925.1 CM021568.2 99.15 True indel: indel (> 5bp) 3611369 3844718 3611812 3845512 NC_060925.1 CM021568.2 99.62 True local misassembly 3844859 4146813 3845750 4150490 NC_060925.1 CM021568.2 98.63 True indel: indel (> 5bp) 4146850 5530884 4150555 5534137 NC_060925.1 CM021568.2 99.68 True local misassembly 5531422 6268417 5534394 6271062 NC_060925.1 CM021568.2 99.78 True local misassembly 6269000 6468889 6271537 6471171 NC_060925.1 CM021568.2 99.62 True local misassembly 6469440 7050126 6471568 7051989 NC_060925.1 CM021568.2 99.73 True local misassembly 7050802 8650492 7052579 8653229 NC_060925.1 CM021568.2 99.71 True indel: indel (> 5bp) 8650607 8915058 8653381 8917809 NC_060925.1 CM021568.2 99.74 True indel: indel (<= 5bp) 8915185 9730775 8917939 9733488 NC_060925.1 CM021568.2 99.9 True local misassembly 9731787 12573420 9734343 12580668 NC_060925.1 CM021568.2 99.58 True local misassembly 12575568 12670619 12580669 12675621 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = -18363 12554748 12593930 12714869 12675622 NC_060925.1 CM021568.2 99.34 True relocation, inconsistency = 29831 12511025 12524812 12728820 12714974 NC_060925.1 CM021568.2 97.55 True indel: indel (<= 5bp) 12504994 12510724 12734880 12729122 NC_060925.1 CM021568.2 99.04 True relocation, inconsistency = 171257 12681982 12777971 12734881 12830922 NC_060925.1 CM021568.2 99.45 True relocation, inconsistency = 157098 12439556 12524812 12916421 12830994 NC_060925.1 CM021568.2 98.96 True relocation, inconsistency = 318834 12843647 14690812 12916422 14763084 NC_060925.1 CM021568.2 99.79 True indel: indel (<= 5bp) 14690841 15475517 14763109 15551290 NC_060925.1 CM021568.2 99.39 True indel: indel (<= 5bp) 15475748 16010474 15551522 16086069 NC_060925.1 CM021568.2 99.68 True relocation, inconsistency = 9437 16019912 16208134 16086070 16274400 NC_060925.1 CM021568.2 99.54 True local misassembly 16209629 16217153 16275914 16283456 NC_060925.1 CM021568.2 97.26 True indel: indel (<= 5bp) 16217262 16217832 16283569 16284139 NC_060925.1 CM021568.2 97.55 True indel: indel (<= 5bp) 16217970 16376342 16284278 16442583 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = -253614 16122729 16131632 16442584 16451455 NC_060925.1 CM021568.2 97.12 True relocation, inconsistency = 86330 16376343 16451668 16526753 16451456 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = 16218 16467887 20538770 16526754 20598552 NC_060925.1 CM021568.2 99.75 True local misassembly 20539011 21201577 20598619 21260656 NC_060925.1 CM021568.2 99.8 True indel: indel (> 5bp) 21201728 24837955 21260787 24896027 NC_060925.1 CM021568.2 99.56 True local misassembly 24838334 26237471 24896314 26295001 NC_060925.1 CM021568.2 99.82 True local misassembly 26237907 29613662 26295312 29672192 NC_060925.1 CM021568.2 99.84 True indel: indel (> 5bp) 29613605 30248998 29672193 30307588 NC_060925.1 CM021568.2 99.75 True local misassembly 30254494 30504972 30307891 30557850 NC_060925.1 CM021568.2 98.59 True local misassembly 30505676 31286558 30558536 31338241 NC_060925.1 CM021568.2 99.54 True local misassembly 31288697 31352020 31339417 31402715 NC_060925.1 CM021568.2 99.69 True local misassembly 31352560 35019801 31403099 35069928 NC_060925.1 CM021568.2 99.86 True local misassembly 35019428 38092412 35070684 38142230 NC_060925.1 CM021568.2 99.8 True indel: indel (> 5bp) 38092576 41415040 38142328 41470550 NC_060925.1 CM021568.2 99.62 True local misassembly 41415360 43463857 41471407 43519367 NC_060925.1 CM021568.2 99.82 True fake: not a misassembly (possible transposable element) 43463860 43464433 43519957 43519384 NC_060925.1 CM021568.2 100.0 True fake: not a misassembly (possible transposable element) 43464678 50261372 43520056 50315838 NC_060925.1 CM021568.2 99.8 True local misassembly 50261503 55545054 50316184 55600860 NC_060925.1 CM021568.2 99.72 True local misassembly 55546972 55547886 55602330 55603244 NC_060925.1 CM021568.2 98.91 True local misassembly 55549126 63275880 55604576 63334951 NC_060925.1 CM021568.2 99.74 True indel: indel (> 5bp) 63276020 64249437 63335034 64308578 NC_060925.1 CM021568.2 99.77 True indel: indel (<= 5bp) 64249672 70525067 64308814 70581528 NC_060925.1 CM021568.2 99.76 True local misassembly 70525465 80166828 70582330 80228072 NC_060925.1 CM021568.2 99.77 True indel: indel (> 5bp) 80166928 80294831 80228178 80356083 NC_060925.1 CM021568.2 99.89 True indel: indel (> 5bp) 80294860 82859273 80356147 82912148 NC_060925.1 CM021568.2 99.44 True indel: indel (> 5bp) 82859316 83894126 82912149 83946787 NC_060925.1 CM021568.2 99.77 True indel: stretch of mismatches 83894127 86825966 83946788 86879099 NC_060925.1 CM021568.2 99.76 True indel: indel (> 5bp) 86826153 89640998 86879253 89697319 NC_060925.1 CM021568.2 99.72 True local misassembly 89641289 91012911 89697461 91069028 NC_060925.1 CM021568.2 99.79 True local misassembly 91013081 103562343 91069086 103617173 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = 188274 103750618 106000214 103617174 105875512 NC_060925.1 CM021568.2 99.46 True indel: indel (> 5bp) 106000577 108516689 105875827 108392696 NC_060925.1 CM021568.2 99.78 True local misassembly 108516787 113427605 108393167 113297807 NC_060925.1 CM021568.2 99.37 True local misassembly 113427706 114216765 113297808 114086932 NC_060925.1 CM021568.2 99.83 True indel: indel (> 5bp) 114216922 120456861 114087114 120330891 NC_060925.1 CM021568.2 99.69 True relocation, inconsistency = 24040528 144497620 144513566 120346776 120330892 NC_060925.1 CM021568.2 97.07 True relocation, inconsistency = -1228702 145644452 145726321 120428593 120346777 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = 24815821 120546481 120828630 120428594 120710774 NC_060925.1 CM021568.2 99.66 True relocation, inconsistency = 104502199 16042437 16044281 120712625 120710775 NC_060925.1 CM021568.2 96.56 True indel: indel (<= 5bp) 16023135 16042046 120731979 120713020 NC_060925.1 CM021568.2 97.24 True relocation, inconsistency = -128472572 144481555 144488008 120746067 120739678 NC_060925.1 CM021568.2 97.66 True local misassembly 144472458 144475710 120755050 120751807 NC_060925.1 CM021568.2 98.8 True relocation, inconsistency = 22845791 120843405 121626327 120755390 121537738 NC_060925.1 CM021568.2 99.7 True local misassembly 121630545 121647293 121537739 121554949 NC_060925.1 CM021568.2 96.27 True relocation, inconsistency = 60057 121707351 121797955 121554950 121645576 NC_060925.1 CM021568.2 96.89 True local misassembly 121798435 121799677 121646396 121647638 NC_060925.1 CM021568.2 97.18 True indel: indel (<= 5bp) 121799890 121800473 121647847 121648430 NC_060925.1 CM021568.2 95.72 True local misassembly 121800813 121802489 121648431 121650107 NC_060925.1 CM021568.2 97.2 True indel: indel (<= 5bp) 121802491 121803126 121650108 121650743 NC_060925.1 CM021568.2 97.01 True fake: not a misassembly (possible transposable element) 121799110 121800021 121654538 121655449 NC_060925.1 CM021568.2 96.27 True fake: not a misassembly (possible transposable element) 121809087 121922940 121656714 121770516 NC_060925.1 CM021568.2 99.78 True local misassembly 121933351 121936831 121780931 121784411 NC_060925.1 CM021568.2 98.82 True fake: not a misassembly (possible transposable element) 123806104 123806641 121784412 121784946 NC_060925.1 CM021568.2 97.0 True fake: not a misassembly (possible transposable element) 121948413 121953608 121799719 121804918 NC_060925.1 CM021568.2 98.62 True local misassembly 121958262 121968097 121805842 121815676 NC_060925.1 CM021568.2 99.35 True local misassembly 121969452 121978164 121816952 121825663 NC_060925.1 CM021568.2 98.54 True relocation, inconsistency = 471003 122449168 122450293 121825664 121826788 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = 2688412 125139578 125140248 121828331 121827661 NC_060925.1 CM021568.2 97.02 True relocation, inconsistency = 3106719 122030590 122031837 121829353 121830599 NC_060925.1 CM021568.2 96.71 True relocation, inconsistency = -48743 121988376 121992030 121835881 121839536 NC_060925.1 CM021568.2 98.25 True indel: indel (<= 5bp) 121992454 122050095 121839961 121897605 NC_060925.1 CM021568.2 99.74 True fake: not a misassembly (possible transposable element) 125981611 125983179 121897606 121899174 NC_060925.1 CM021568.2 97.05 True fake: not a misassembly (possible transposable element) 122082423 122089316 121929615 121936591 NC_060925.1 CM021568.2 97.32 True fake: not a misassembly (possible transposable element) 25925684 25927405 121937362 121939083 NC_060943.1 CM021568.2 96.23 True fake: not a misassembly (possible transposable element) 122103642 122114832 121950916 121962105 NC_060925.1 CM021568.2 98.41 True fake: not a misassembly (possible transposable element) 122090295 122093726 121962453 121965884 NC_060925.1 CM021568.2 98.78 True fake: not a misassembly (possible transposable element) 122118613 122125421 121965885 121972693 NC_060925.1 CM021568.2 98.43 True relocation, inconsistency = 1300829 123430514 123432948 121976957 121979387 NC_060925.1 CM021568.2 97.15 True relocation, inconsistency = 2670235 126103184 126107627 121979388 121983832 NC_060925.1 CM021568.2 97.89 True relocation, inconsistency = -3844615 122263514 122267180 121984334 121988000 NC_060925.1 CM021568.2 96.81 True relocation, inconsistency = 3597746 125866039 125866691 121989113 121989765 NC_060925.1 CM021568.2 98.01 True translocation 29077739 29078452 122003137 122003851 NC_060943.1 CM021568.2 97.9 True translocation 122157326 122214894 122004589 122062155 NC_060925.1 CM021568.2 99.73 True fake: not a misassembly (possible transposable element) 122184071 122185251 122067365 122068544 NC_060925.1 CM021568.2 98.05 True fake: not a misassembly (possible transposable element) 122222150 122226658 122069412 122073920 NC_060925.1 CM021568.2 98.43 True relocation, inconsistency = 2771679 124998758 125000363 122075525 122073921 NC_060925.1 CM021568.2 98.2 True translocation 28987301 28988607 122075526 122076831 NC_060943.1 CM021568.2 96.65 True translocation 122229570 122236175 122076832 122083435 NC_060925.1 CM021568.2 99.02 True indel: stretch of mismatches 122236324 122241432 122083584 122088692 NC_060925.1 CM021568.2 97.85 True indel: stretch of mismatches 122241803 122258881 122089063 122106142 NC_060925.1 CM021568.2 99.58 True local misassembly 122269096 122274223 122116360 122121479 NC_060925.1 CM021568.2 98.91 True relocation, inconsistency = 2704736 124978960 124980319 122122838 122121480 NC_060925.1 CM021568.2 97.37 True relocation, inconsistency = 872812 124083716 124084913 122144073 122145271 NC_060925.1 CM021568.2 96.66 True relocation, inconsistency = -1654674 122431515 122432441 122146547 122147473 NC_060925.1 CM021568.2 97.39 True relocation, inconsistency = -132219 122300223 122314364 122147474 122161619 NC_060925.1 CM021568.2 99.69 True fake: not a misassembly (possible transposable element) 125792649 125794055 122163026 122161620 NC_060925.1 CM021568.2 97.83 True fake: not a misassembly (possible transposable element) 122332513 122343570 122179764 122190820 NC_060925.1 CM021568.2 99.18 True translocation 29370129 29372367 122211207 122213446 NC_060943.1 CM021568.2 96.12 True translocation 122376803 122378880 122236928 122239004 NC_060925.1 CM021568.2 98.22 True relocation, inconsistency = 12914 122391795 122400766 122239005 122247977 NC_060925.1 CM021568.2 99.44 True local misassembly 122408925 122409945 122250361 122251381 NC_060925.1 CM021568.2 98.63 True local misassembly 122410743 122411819 122251842 122252918 NC_060925.1 CM021568.2 99.07 True translocation 29591773 29593852 122253531 122255610 NC_060943.1 CM021568.2 97.26 True translocation 123481844 123485765 122256638 122260556 NC_060925.1 CM021568.2 98.6 True relocation, inconsistency = 2430814 125928204 125929865 122272181 122273842 NC_060925.1 CM021568.2 97.95 True relocation, inconsistency = 1748090 124163490 124165358 122290461 122288598 NC_060925.1 CM021568.2 96.37 True relocation, inconsistency = 1704252 122446521 122455960 122293739 122303183 NC_060925.1 CM021568.2 98.63 True relocation, inconsistency = 2639916 125095877 125096692 122304000 122303184 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = -720611 125813020 125816265 122307472 122304223 NC_060925.1 CM021568.2 98.65 True translocation 29573811 29575314 122334821 122336324 NC_060943.1 CM021568.2 97.28 True translocation 122503621 122512495 122350833 122359707 NC_060925.1 CM021568.2 99.54 True translocation 28497754 28500177 122362712 122365136 NC_060943.1 CM021568.2 97.11 True translocation 126075125 126075881 122379687 122380443 NC_060925.1 CM021568.2 97.36 True relocation, inconsistency = 1867391 124196013 124200406 122392163 122387771 NC_060925.1 CM021568.2 97.86 True relocation, inconsistency = -869805 125063958 125065817 122394023 122392164 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = 1540217 123522466 123523309 122394455 122395298 NC_060925.1 CM021568.2 97.99 True indel: indel (<= 5bp) 123523311 123523861 122395299 122395849 NC_060925.1 CM021568.2 98.26 True relocation, inconsistency = 564574 124088436 124091711 122395850 122399130 NC_060925.1 CM021568.2 98.57 True relocation, inconsistency = -430661 123661987 123667192 122400067 122405272 NC_060925.1 CM021568.2 98.81 True relocation, inconsistency = -1153995 122513198 122517517 122405273 122409591 NC_060925.1 CM021568.2 98.98 True relocation, inconsistency = 151600 122669118 122675690 122409592 122416164 NC_060925.1 CM021568.2 99.25 True relocation, inconsistency = -287892 122389611 122390141 122417977 122418507 NC_060925.1 CM021568.2 98.31 True relocation, inconsistency = 1354546 123748379 123750570 122422199 122424384 NC_060925.1 CM021568.2 98.31 True translocation 29488653 29490100 122424385 122425833 NC_060943.1 CM021568.2 95.84 True relocation, inconsistency = 248780 29739630 29742920 122426583 122429884 NC_060943.1 CM021568.2 96.46 True relocation, inconsistency = -110763 29633647 29634582 122431374 122432309 NC_060943.1 CM021568.2 97.86 True translocation 121802003 121804688 122433244 122435934 NC_060925.1 CM021568.2 96.8 True relocation, inconsistency = 2379790 124186681 124188459 122439920 122438137 NC_060925.1 CM021568.2 97.03 True translocation 28394170 28397636 122441306 122444772 NC_060943.1 CM021568.2 97.0 True translocation 125095885 125097173 122446064 122444773 NC_060925.1 CM021568.2 98.34 True relocation, inconsistency = 2488534 122598874 122607350 122446065 122454539 NC_060925.1 CM021568.2 99.46 True local misassembly 122607853 122619245 122455042 122466431 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = 3362456 125981964 125984512 122466694 122469243 NC_060925.1 CM021568.2 97.33 True relocation, inconsistency = -2920617 123071110 123072562 122476458 122477910 NC_060925.1 CM021568.2 98.75 True relocation, inconsistency = -320820 122751743 122756244 122477911 122482412 NC_060925.1 CM021568.2 98.65 True relocation, inconsistency = 24474 122798116 122805550 122499810 122507243 NC_060925.1 CM021568.2 98.55 True translocation 29748022 29749519 122513093 122514590 NC_060943.1 CM021568.2 96.53 True translocation 122522653 122527922 122521465 122526734 NC_060925.1 CM021568.2 99.39 True relocation, inconsistency = 993907 123524248 123527137 122529153 122532045 NC_060925.1 CM021568.2 97.89 True relocation, inconsistency = -938144 122609195 122614833 122552247 122557885 NC_060925.1 CM021568.2 98.39 True relocation, inconsistency = 95846 122713981 122745379 122561187 122592580 NC_060925.1 CM021568.2 99.55 True translocation 29407087 29408397 122592850 122594160 NC_060943.1 CM021568.2 97.94 True translocation 124083124 124085503 122594519 122596898 NC_060925.1 CM021568.2 98.87 True indel: stretch of mismatches 124085700 124086888 122597095 122598283 NC_060925.1 CM021568.2 98.23 True indel: indel (<= 5bp) 124086890 124087545 122598284 122598939 NC_060925.1 CM021568.2 98.48 True local misassembly 124087887 124088433 122598940 122599486 NC_060925.1 CM021568.2 97.99 True local misassembly 124088772 124089607 122599487 122600322 NC_060925.1 CM021568.2 99.16 True translocation 49595773 49596627 122604856 122605710 NC_060929.1 CM021568.2 96.61 True translocation 122751989 122756490 122616522 122621023 NC_060925.1 CM021568.2 99.0 True relocation, inconsistency = -8838 122749703 122757957 122623074 122631329 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = -22101 122736779 122737975 122632252 122633447 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = 618272 123366948 123372467 122644148 122649671 NC_060925.1 CM021568.2 97.99 True relocation, inconsistency = -569994 122802634 122808279 122649832 122655506 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 1214142 124063755 124066546 122696840 122699632 NC_060925.1 CM021568.2 98.53 True relocation, inconsistency = 1525572 125596708 125599488 122707002 122704222 NC_060925.1 CM021568.2 98.99 True local misassembly 125594668 125596367 122708702 122707003 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = 3253728 122319405 122320271 122728505 122729371 NC_060925.1 CM021568.2 98.21 True relocation, inconsistency = 841939 123162211 123165651 122729372 122732812 NC_060925.1 CM021568.2 99.56 True relocation, inconsistency = -280055 122920638 122926378 122767854 122773592 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = 3177024 126103403 126104858 122773593 122775046 NC_060925.1 CM021568.2 95.62 True relocation, inconsistency = -359393 125888576 125889642 122918157 122919223 NC_060925.1 CM021568.2 97.75 True translocation 29741319 29743428 122961634 122963746 NC_060943.1 CM021568.2 96.26 True translocation 126113315 126116468 123008886 123012044 NC_060925.1 CM021568.2 96.87 True relocation, inconsistency = 622450 125486358 125487569 123016551 123015340 NC_060925.1 CM021568.2 99.59 True indel: indel (<= 5bp) 125484433 125486356 123018475 123016552 NC_060925.1 CM021568.2 98.44 True local misassembly 125482656 125484432 123020592 123018816 NC_060925.1 CM021568.2 98.87 True relocation, inconsistency = 1953978 123348587 123353422 123195848 123200682 NC_060925.1 CM021568.2 98.78 True fake: not a misassembly (possible transposable element) 126113315 126114399 123205707 123206793 NC_060925.1 CM021568.2 97.42 True fake: not a misassembly (possible transposable element) 123360054 123378010 123207313 123225269 NC_060925.1 CM021568.2 99.73 True relocation, inconsistency = 322586 123700597 123702626 123225270 123227298 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 269878 123977768 123979211 123232562 123234006 NC_060925.1 CM021568.2 97.37 True relocation, inconsistency = -592467 123388008 123409283 123235270 123256546 NC_060925.1 CM021568.2 99.64 True relocation, inconsistency = -1251548 122157736 122158641 123256547 123257451 NC_060925.1 CM021568.2 97.06 True relocation, inconsistency = 3115727 125280759 125283297 123266379 123263842 NC_060925.1 CM021568.2 98.11 True relocation, inconsistency = 1829276 123421648 123448952 123268910 123296213 NC_060925.1 CM021568.2 99.8 True fake: not a misassembly (possible transposable element) 125995508 125999277 123301911 123305680 NC_060925.1 CM021568.2 97.14 True fake: not a misassembly (possible transposable element) 123463779 123511054 123311039 123358313 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = 21754 123536511 123537041 123362016 123362546 NC_060925.1 CM021568.2 96.99 True local misassembly 123537042 123538500 123362887 123364345 NC_060925.1 CM021568.2 99.04 True local misassembly 123538841 123539453 123364346 123364958 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = 2320017 125860919 125866194 123366407 123371633 NC_060925.1 CM021568.2 96.29 True local misassembly 125868574 125870513 123371634 123373573 NC_060925.1 CM021568.2 96.62 True relocation, inconsistency = -10198 125860316 125861095 123373574 123374353 NC_060925.1 CM021568.2 98.64 True relocation, inconsistency = 314293 126175691 126178445 123374656 123377408 NC_060925.1 CM021568.2 97.57 True translocation 29435453 29437236 123396355 123398138 NC_060943.1 CM021568.2 97.37 True relocation, inconsistency = 216134 29741183 29743776 123485951 123488549 NC_060943.1 CM021568.2 96.96 True relocation, inconsistency = -322852 29439533 29440843 123507158 123508468 NC_060943.1 CM021568.2 97.25 True translocation 123670904 123673966 123518111 123521173 NC_060925.1 CM021568.2 99.01 True indel: stretch of mismatches 123673967 123688309 123521174 123535517 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = -18357 123684446 123688399 123550011 123553964 NC_060925.1 CM021568.2 99.39 True fake: not a misassembly (possible transposable element) 123737016 123739249 123553965 123556198 NC_060925.1 CM021568.2 98.11 True fake: not a misassembly (possible transposable element) 123706530 123708993 123571074 123573537 NC_060925.1 CM021568.2 98.3 True relocation, inconsistency = 38756 123753784 123756053 123579572 123581840 NC_060925.1 CM021568.2 98.59 True relocation, inconsistency = -87032 123683071 123689614 123595890 123602434 NC_060925.1 CM021568.2 98.93 True relocation, inconsistency = 134278 123823986 123825835 123602528 123604377 NC_060925.1 CM021568.2 98.81 True indel: indel (<= 5bp) 123825836 123828567 123604379 123607110 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = -68664 123759904 123763819 123607111 123611024 NC_060925.1 CM021568.2 99.21 True translocation 29435288 29436472 123611025 123612209 NC_060943.1 CM021568.2 97.6 True translocation 123484564 123487696 123612210 123615342 NC_060925.1 CM021568.2 98.63 True relocation, inconsistency = 280443 123772255 123779973 123619458 123627180 NC_060925.1 CM021568.2 98.98 True translocation 25941352 25942073 123628460 123629181 NC_060943.1 CM021568.2 97.65 True translocation 126211240 126217946 123638626 123645283 NC_060925.1 CM021568.2 97.2 True relocation, inconsistency = -2419819 123829005 123840594 123676161 123687765 NC_060925.1 CM021568.2 98.82 True translocation 25991634 25993274 123693985 123695624 NC_060943.1 CM021568.2 97.38 True translocation 124085027 124087986 123700056 123703012 NC_060925.1 CM021568.2 98.28 True relocation, inconsistency = -232141 123859457 123864864 123706624 123712031 NC_060925.1 CM021568.2 98.54 True indel: stretch of mismatches 123864865 123881690 123712032 123728855 NC_060925.1 CM021568.2 99.49 True translocation 25926807 25930854 123729431 123733476 NC_060943.1 CM021568.2 96.79 True translocation 124914775 124918991 123807975 123803759 NC_060925.1 CM021568.2 98.09 True relocation, inconsistency = 872687 124034572 124042087 123807976 123815491 NC_060925.1 CM021568.2 98.86 True translocation 29567003 29568878 123817107 123818982 NC_060943.1 CM021568.2 97.44 True relocation, inconsistency = 26857 29596584 29599971 123819831 123823218 NC_060943.1 CM021568.2 97.02 True translocation 126261277 126263254 123827984 123829962 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = -2280448 123988772 124007958 123835928 123855111 NC_060925.1 CM021568.2 99.5 True indel: stretch of mismatches 124007959 124015098 123855112 123862249 NC_060925.1 CM021568.2 99.02 True relocation, inconsistency = 1832225 125848638 125849955 123863567 123862250 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = 1938425 123906636 123909448 123863568 123866380 NC_060925.1 CM021568.2 97.79 True relocation, inconsistency = -175042 123734407 123736747 123866381 123868720 NC_060925.1 CM021568.2 97.68 True relocation, inconsistency = 383077 124119825 124123663 123868721 123872561 NC_060925.1 CM021568.2 98.81 True relocation, inconsistency = -98250 124025414 124034256 123872562 123881401 NC_060925.1 CM021568.2 98.8 True fake: not a misassembly (possible transposable element) 124506714 124511246 123885933 123881402 NC_060925.1 CM021568.2 98.11 True fake: not a misassembly (possible transposable element) 124045309 124049735 123892455 123896881 NC_060925.1 CM021568.2 99.73 True indel: indel (<= 5bp) 124050096 124050674 123897243 123897821 NC_060925.1 CM021568.2 99.48 True relocation, inconsistency = -1212447 122839124 122839745 123898718 123899339 NC_060925.1 CM021568.2 98.71 True relocation, inconsistency = 1219587 124059338 124062231 123899345 123902241 NC_060925.1 CM021568.2 98.62 True local misassembly 124059813 124062236 123902544 123904967 NC_060925.1 CM021568.2 98.31 True local misassembly 124058221 124064180 123905370 123911332 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 1418822 125483433 125485350 123913680 123911763 NC_060925.1 CM021568.2 98.12 True translocation 29393258 29396356 123917504 123920601 NC_060943.1 CM021568.2 97.1 True translocation 124510893 124513356 123933427 123930964 NC_060925.1 CM021568.2 98.22 True relocation, inconsistency = 397734 124111208 124112373 123934213 123935378 NC_060925.1 CM021568.2 98.2 True local misassembly 124112374 124114395 123935719 123937740 NC_060925.1 CM021568.2 98.96 True local misassembly 124119536 124124513 123938115 123943093 NC_060925.1 CM021568.2 98.17 True relocation, inconsistency = -20405 124104109 124107012 123943094 123945996 NC_060925.1 CM021568.2 99.03 True local misassembly 124104292 124116575 123945997 123958619 NC_060925.1 CM021568.2 96.68 True local misassembly 124119369 124125043 123961754 123967430 NC_060925.1 CM021568.2 99.12 True local misassembly 124120285 124125043 123967431 123972191 NC_060925.1 CM021568.2 99.31 True local misassembly 124127148 124141893 123974297 123989045 NC_060925.1 CM021568.2 99.29 True relocation, inconsistency = 1863722 126006265 126009713 123992492 123989046 NC_060925.1 CM021568.2 97.64 True translocation 29740621 29744687 123996575 123992493 NC_060943.1 CM021568.2 96.37 True translocation 124149426 124154415 123996576 124001566 NC_060925.1 CM021568.2 99.88 True local misassembly 124155002 124163800 124002153 124010948 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 1339331 122770966 122771563 124055653 124055056 NC_060925.1 CM021568.2 95.99 True indel: indel (<= 5bp) 122770456 122770964 124056162 124055654 NC_060925.1 CM021568.2 99.21 True indel: indel (<= 5bp) 122769450 122770455 124057169 124056164 NC_060925.1 CM021568.2 99.4 True local misassembly 122767033 122768925 124059241 124057349 NC_060925.1 CM021568.2 98.47 True translocation 25907860 25908878 124074051 124073033 NC_060943.1 CM021568.2 97.14 True translocation 125494279 125497423 124074052 124077198 NC_060925.1 CM021568.2 98.25 True relocation, inconsistency = -24888 125487143 125488679 124091806 124093342 NC_060925.1 CM021568.2 97.4 True translocation 29562593 29565726 124099696 124096563 NC_060943.1 CM021568.2 97.03 True translocation 124263739 124269836 124110466 124116560 NC_060925.1 CM021568.2 99.08 True relocation, inconsistency = 1645675 125915512 125919256 124120304 124116561 NC_060925.1 CM021568.2 98.26 True relocation, inconsistency = 3649398 122264288 122265819 124122132 124120599 NC_060925.1 CM021568.2 98.44 True relocation, inconsistency = -1282819 123522636 123527662 124146602 124141577 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 758263 124358578 124367520 124219255 124228199 NC_060925.1 CM021568.2 98.82 True relocation, inconsistency = 1215556 125584352 125594023 124229475 124239144 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = -1201621 124397663 124406021 124244405 124252763 NC_060925.1 CM021568.2 98.89 True local misassembly 124427913 124434429 124274657 124281174 NC_060925.1 CM021568.2 98.97 True fake: not a misassembly (possible transposable element) 125807252 125808976 124283086 124284810 NC_060925.1 CM021568.2 98.6 True fake: not a misassembly (possible transposable element) 124438064 124443088 124284811 124289833 NC_060925.1 CM021568.2 98.77 True translocation 29747891 29749519 124304639 124303011 NC_060943.1 CM021568.2 96.81 True translocation 125032201 125038628 124315695 124322122 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = 750205 125790358 125793836 124323647 124327125 NC_060925.1 CM021568.2 98.42 True translocation 25932824 25933548 124331294 124330570 NC_060943.1 CM021568.2 98.07 True translocation 124491506 124498833 124344377 124351703 NC_060925.1 CM021568.2 99.0 True relocation, inconsistency = 365431 124864265 124867178 124351704 124354617 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 635295 125505824 125509999 124357968 124362142 NC_060925.1 CM021568.2 99.45 True translocation 29057272 29058678 124392453 124391047 NC_060943.1 CM021568.2 96.66 True translocation 126074437 126075640 124399540 124398337 NC_060925.1 CM021568.2 96.43 True relocation, inconsistency = 1662478 124402102 124402865 124408634 124409397 NC_060925.1 CM021568.2 97.38 True relocation, inconsistency = 560974 123836372 123839512 124414156 124411013 NC_060925.1 CM021568.2 98.0 True relocation, inconsistency = 29225 123805376 123807146 124415927 124414157 NC_060925.1 CM021568.2 99.18 True local misassembly 123803993 123805375 124417650 124416268 NC_060925.1 CM021568.2 99.57 True relocation, inconsistency = 1658146 125505334 125510026 124459463 124464153 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = -892632 124618757 124625079 124465516 124471835 NC_060925.1 CM021568.2 98.73 True local misassembly 124630232 124652654 124476984 124499405 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 1260689 125914454 125919523 124504473 124499406 NC_060925.1 CM021568.2 98.59 True local misassembly 125918655 125920571 124506389 124504474 NC_060925.1 CM021568.2 98.48 True local misassembly 125913344 125920694 124513737 124506390 NC_060925.1 CM021568.2 98.39 True local misassembly 125909474 125911304 124515568 124513738 NC_060925.1 CM021568.2 97.88 True relocation, inconsistency = 1228229 124677022 124681200 124515613 124519791 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = 2405538 122268364 122271483 124522911 124519792 NC_060925.1 CM021568.2 99.02 True translocation 25938742 25939693 124524566 124523615 NC_060943.1 CM021568.2 97.38 True translocation 122439329 122442132 124581040 124578238 NC_060925.1 CM021568.2 98.11 True translocation 29504222 29505891 124589423 124587754 NC_060943.1 CM021568.2 97.31 True translocation 124163244 124165358 124592176 124594289 NC_060925.1 CM021568.2 97.5 True relocation, inconsistency = 79070 124022630 124026113 124655832 124652350 NC_060925.1 CM021568.2 97.7 True relocation, inconsistency = -72058 124088721 124089332 124661799 124661188 NC_060925.1 CM021568.2 98.04 True indel: indel (<= 5bp) 124087741 124088720 124662781 124661802 NC_060925.1 CM021568.2 98.16 True local misassembly 124085700 124087442 124665161 124663419 NC_060925.1 CM021568.2 98.34 True indel: stretch of mismatches 124084387 124085503 124666474 124665358 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 1260103 125354144 125356447 124675012 124677315 NC_060925.1 CM021568.2 98.22 True relocation, inconsistency = 912184 126276227 126277064 124685747 124684911 NC_060925.1 CM021568.2 97.26 True translocation 29401655 29404773 124690473 124687355 NC_060943.1 CM021568.2 96.79 True translocation 123102751 123104666 124713687 124711772 NC_060925.1 CM021568.2 99.11 True local misassembly 123100432 123102620 124716346 124714158 NC_060925.1 CM021568.2 98.17 True indel: indel (<= 5bp) 123098927 123100430 124717850 124716347 NC_060925.1 CM021568.2 97.54 True relocation, inconsistency = -3161522 126259625 126260448 124718675 124717851 NC_060925.1 CM021568.2 98.33 True relocation, inconsistency = 634531 125609064 125612995 124730774 124734700 NC_060925.1 CM021568.2 97.89 True translocation 25977016 25977695 124762330 124761651 NC_060943.1 CM021568.2 97.35 True translocation 126262157 126263154 124793310 124792312 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = 385651 125874948 125876505 124794869 124793311 NC_060925.1 CM021568.2 98.85 True translocation 29731848 29733170 124796192 124794870 NC_060943.1 CM021568.2 96.4 True translocation 124951070 124956629 124797811 124803369 NC_060925.1 CM021568.2 99.03 True relocation, inconsistency = -754932 124202018 124203312 124803690 124804981 NC_060925.1 CM021568.2 97.16 True relocation, inconsistency = 2267121 121932435 121934896 124807445 124804982 NC_060925.1 CM021568.2 97.0 True relocation, inconsistency = 3025813 124961305 124963874 124808041 124810611 NC_060925.1 CM021568.2 98.17 True local misassembly 124968341 124973247 124815083 124819994 NC_060925.1 CM021568.2 98.96 True fake: not a misassembly (possible transposable element) 125830793 125836039 124821632 124826878 NC_060925.1 CM021568.2 98.8 True fake: not a misassembly (possible transposable element) 124990026 125005424 124836774 124852173 NC_060925.1 CM021568.2 99.19 True fake: not a misassembly (possible transposable element) 124015168 124020426 124863161 124857904 NC_060925.1 CM021568.2 99.05 True fake: not a misassembly (possible transposable element) 125036347 125042703 124883093 124889448 NC_060925.1 CM021568.2 99.43 True relocation, inconsistency = -911582 124162629 124163745 124920956 124922072 NC_060925.1 CM021568.2 98.93 True local misassembly 124164520 124165265 124922507 124923252 NC_060925.1 CM021568.2 97.72 True local misassembly 124165606 124166791 124923253 124924438 NC_060925.1 CM021568.2 99.58 True local misassembly 124166900 124167738 124924887 124925725 NC_060925.1 CM021568.2 97.26 True relocation, inconsistency = 2179189 121973802 121977929 124939634 124935507 NC_060925.1 CM021568.2 97.92 True relocation, inconsistency = -4011257 125978813 125984163 124945831 124940530 NC_060925.1 CM021568.2 96.82 True translocation 29391761 29392956 124952877 124951681 NC_060943.1 CM021568.2 97.99 True relocation, inconsistency = -45391 29434093 29436540 124955936 124953489 NC_060943.1 CM021568.2 97.22 True translocation 125122028 125128720 124968717 124975406 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = -508541 124620180 124621214 124975407 124976441 NC_060925.1 CM021568.2 98.02 True relocation, inconsistency = 548659 125187305 125196729 124993873 125003636 NC_060925.1 CM021568.2 95.78 True relocation, inconsistency = -9183 125188041 125200499 125004131 125016594 NC_060925.1 CM021568.2 98.78 True relocation, inconsistency = 1082948 124090546 124094487 125031142 125027200 NC_060925.1 CM021568.2 98.71 True relocation, inconsistency = 557775 123523550 123527662 125040365 125036251 NC_060925.1 CM021568.2 98.23 True relocation, inconsistency = 1395759 124925757 124929776 125042701 125046719 NC_060925.1 CM021568.2 98.66 True translocation 29590461 29591547 125051139 125050052 NC_060943.1 CM021568.2 97.24 True local misassembly 29590121 29592583 125055897 125053434 NC_060943.1 CM021568.2 97.28 True relocation, inconsistency = -41126 29603386 29604481 125083757 125082663 NC_060943.1 CM021568.2 96.26 True translocation 125238611 125247521 125085295 125094204 NC_060925.1 CM021568.2 98.28 True fake: not a misassembly (possible transposable element) 125139578 125140248 125098789 125099459 NC_060925.1 CM021568.2 97.02 True fake: not a misassembly (possible transposable element) 125270978 125276327 125117663 125123013 NC_060925.1 CM021568.2 98.45 True fake: not a misassembly (possible transposable element) 125115963 125116863 125163898 125164798 NC_060925.1 CM021568.2 97.56 True fake: not a misassembly (possible transposable element) 125318515 125323292 125165204 125169981 NC_060925.1 CM021568.2 99.9 True translocation 29439533 29440843 125172816 125171505 NC_060943.1 CM021568.2 96.95 True translocation 126107555 126108648 125174845 125173752 NC_060925.1 CM021568.2 97.71 True relocation, inconsistency = 724726 125356888 125358285 125198137 125199534 NC_060925.1 CM021568.2 97.85 True local misassembly 125352846 125362082 125199535 125208770 NC_060925.1 CM021568.2 99.08 True relocation, inconsistency = 3331949 121997207 122001528 125232382 125228139 NC_060925.1 CM021568.2 95.95 True relocation, inconsistency = 2337524 124339053 124340671 125232383 125233999 NC_060925.1 CM021568.2 98.06 True relocation, inconsistency = 1257706 125607620 125608326 125243242 125243949 NC_060925.1 CM021568.2 98.45 True relocation, inconsistency = 3232272 122371257 122372458 125248040 125246839 NC_060925.1 CM021568.2 97.42 True relocation, inconsistency = -3609580 125976801 125980257 125252082 125248620 NC_060925.1 CM021568.2 97.78 True relocation, inconsistency = 1020440 124948636 124951170 125257273 125259810 NC_060925.1 CM021568.2 98.19 True relocation, inconsistency = 461939 125413609 125421966 125260310 125268666 NC_060925.1 CM021568.2 99.33 True relocation, inconsistency = 216855 125697629 125698800 125327474 125328645 NC_060925.1 CM021568.2 98.72 True local misassembly 125698801 125701026 125328986 125331211 NC_060925.1 CM021568.2 99.19 True indel: indel (<= 5bp) 125701028 125702532 125331212 125332716 NC_060925.1 CM021568.2 98.47 True translocation 29743460 29744108 125340616 125339968 NC_060943.1 CM021568.2 96.76 True translocation 125493916 125500166 125340617 125346868 NC_060925.1 CM021568.2 99.07 True relocation, inconsistency = 731498 126261277 126263254 125378460 125376481 NC_060925.1 CM021568.2 97.98 True relocation, inconsistency = 502079 125696860 125703865 125433793 125440795 NC_060925.1 CM021568.2 98.7 True relocation, inconsistency = -1318209 124386061 124387920 125441200 125443059 NC_060925.1 CM021568.2 99.35 True local misassembly 124387921 124389422 125443399 125444900 NC_060925.1 CM021568.2 98.67 True indel: indel (<= 5bp) 124389424 124389926 125444901 125445403 NC_060925.1 CM021568.2 99.6 True indel: indel (<= 5bp) 124389927 124390745 125445405 125446223 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = -7817 124385722 124390745 125449017 125454040 NC_060925.1 CM021568.2 99.12 True relocation, inconsistency = 2098100 122265360 122266748 125476302 125474914 NC_060925.1 CM021568.2 98.16 True relocation, inconsistency = 2377757 124644506 124666927 125476303 125498724 NC_060925.1 CM021568.2 99.6 True relocation, inconsistency = 1527490 126196760 126197831 125502138 125501067 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 518069 125662235 125671880 125508949 125518592 NC_060925.1 CM021568.2 98.95 True local misassembly 125685415 125691598 125532127 125538311 NC_060925.1 CM021568.2 99.35 True translocation 29580002 29581396 125542860 125541466 NC_060943.1 CM021568.2 96.56 True translocation 125707727 125714409 125543864 125550545 NC_060925.1 CM021568.2 99.03 True relocation, inconsistency = -244728 125475182 125480770 125556046 125561636 NC_060925.1 CM021568.2 99.11 True translocation 29425995 29428657 125613762 125611100 NC_060943.1 CM021568.2 97.18 True translocation 125791378 125798044 125638060 125644728 NC_060925.1 CM021568.2 99.0 True relocation, inconsistency = -1286593 124511452 124515149 125644729 125648425 NC_060925.1 CM021568.2 98.78 True relocation, inconsistency = 972934 123522251 123526457 125664691 125660486 NC_060925.1 CM021568.2 97.86 True translocation 25836341 25837849 125666550 125665038 NC_060943.1 CM021568.2 96.3 True relocation, inconsistency = -3223837 29057192 29057998 125669536 125668730 NC_060943.1 CM021568.2 96.16 True translocation 123444346 123446666 125674264 125671946 NC_060925.1 CM021568.2 97.59 True relocation, inconsistency = 2380910 125836203 125843089 125682891 125689781 NC_060925.1 CM021568.2 99.06 True fake: not a misassembly (possible transposable element) 29008042 29011517 125695918 125692444 NC_060943.1 CM021568.2 96.81 True fake: not a misassembly (possible transposable element) 125851789 125872750 125698484 125719446 NC_060925.1 CM021568.2 99.26 True indel: stretch of mismatches 125872751 125877628 125719447 125724323 NC_060925.1 CM021568.2 98.27 True fake: not a misassembly (possible transposable element) 122085086 122086504 125724993 125726413 NC_060925.1 CM021568.2 97.23 True fake: not a misassembly (possible transposable element) 125879768 125889642 125726414 125736288 NC_060925.1 CM021568.2 98.1 True local misassembly 125890238 125909979 125736884 125756624 NC_060925.1 CM021568.2 99.55 True indel: stretch of mismatches 125909980 125918271 125756625 125764917 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = -3654154 122264118 122266761 125764918 125767564 NC_060925.1 CM021568.2 98.0 True relocation, inconsistency = 1960374 124234966 124236032 125775955 125774889 NC_060925.1 CM021568.2 97.08 True relocation, inconsistency = 1693279 125929312 125935549 125775956 125782198 NC_060925.1 CM021568.2 98.51 True local misassembly 125958728 125969728 125805344 125816343 NC_060925.1 CM021568.2 98.65 True relocation, inconsistency = 132372 126102117 126106268 125816360 125820513 NC_060925.1 CM021568.2 97.64 True relocation, inconsistency = -3939792 122166477 122168427 125820514 125822465 NC_060925.1 CM021568.2 96.28 True relocation, inconsistency = 4001484 126169964 126171271 125822518 125823821 NC_060925.1 CM021568.2 96.53 True relocation, inconsistency = -194066 125977206 126103552 125823822 125950171 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = -97861 126005952 126009526 125950432 125954006 NC_060925.1 CM021568.2 98.21 True relocation, inconsistency = 122950 126132977 126135089 125954507 125956616 NC_060925.1 CM021568.2 97.44 True relocation, inconsistency = -25091 126110448 126135112 125957066 125981726 NC_060925.1 CM021568.2 99.57 True indel: indel (<= 5bp) 126135261 126144474 125981876 125991134 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = 111359 126255834 126256859 125991135 125992161 NC_060925.1 CM021568.2 96.54 True relocation, inconsistency = -226453 126030407 126037127 125992162 125998833 NC_060925.1 CM021568.2 97.56 True relocation, inconsistency = 115093 126156898 126224320 126003511 126070932 NC_060925.1 CM021568.2 99.67 True local misassembly 126224916 126228021 126071529 126074636 NC_060925.1 CM021568.2 98.46 True fake: not a misassembly (possible transposable element) 125865091 125867567 126074927 126077404 NC_060925.1 CM021568.2 97.3 True fake: not a misassembly (possible transposable element) 126232636 126237911 126079251 126084525 NC_060925.1 CM021568.2 98.29 True indel: stretch of mismatches 126238220 126246064 126084834 126092677 NC_060925.1 CM021568.2 98.18 True local misassembly 126249967 126256910 126096582 126103523 NC_060925.1 CM021568.2 98.27 True indel: stretch of mismatches 126256911 126431981 126103524 126278594 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = -130615 126301367 126693525 126278595 126671106 NC_060925.1 CM021568.2 98.91 True relocation, inconsistency = 7649 126701175 126933490 126671107 126902941 NC_060925.1 CM021568.2 98.94 True local misassembly 126938158 126938731 126906049 126906622 NC_060925.1 CM021568.2 97.91 True relocation, inconsistency = 52796 126992112 127001048 126907207 126916253 NC_060925.1 CM021568.2 95.04 True relocation, inconsistency = 106023 127107072 127107740 126916254 126916922 NC_060925.1 CM021568.2 96.14 True local misassembly 127102260 127107530 126916923 126922166 NC_060925.1 CM021568.2 96.07 True local misassembly 127102153 127103851 126922329 126924027 NC_060925.1 CM021568.2 99.53 True indel: indel (<= 5bp) 127104167 127106262 126924340 126926435 NC_060925.1 CM021568.2 97.81 True indel: indel (> 5bp) 127106286 127107384 126926436 126927534 NC_060925.1 CM021568.2 99.0 True indel: indel (> 5bp) 127107385 127108592 126927561 126928768 NC_060925.1 CM021568.2 98.59 True local misassembly 127108992 127110349 126929009 126930366 NC_060925.1 CM021568.2 98.31 True indel: indel (> 5bp) 127110373 127110945 126930367 126930939 NC_060925.1 CM021568.2 98.43 True relocation, inconsistency = -92573 127020048 127022706 126932615 126935273 NC_060925.1 CM021568.2 98.19 True indel: indel (> 5bp) 127023042 127024108 126935658 126936724 NC_060925.1 CM021568.2 98.78 True indel: indel (<= 5bp) 127024516 127025306 126937133 126937923 NC_060925.1 CM021568.2 98.99 True relocation, inconsistency = 2087476 129113055 129116694 126941857 126938196 NC_060925.1 CM021568.2 97.27 True relocation, inconsistency = -10553404 139665384 139666458 126942929 126941858 NC_060925.1 CM021568.2 97.74 True relocation, inconsistency = 9949050 129714962 129715738 126944301 126943525 NC_060925.1 CM021568.2 98.71 True local misassembly 129712484 129714506 126946324 126944302 NC_060925.1 CM021568.2 96.94 True relocation, inconsistency = 2755148 126951901 126956248 126947412 126951734 NC_060925.1 CM021568.2 96.55 True relocation, inconsistency = 167368 127123617 127125960 126951735 126954098 NC_060925.1 CM021568.2 96.64 True relocation, inconsistency = 14956457 142082418 142089628 126961286 126954099 NC_060925.1 CM021568.2 96.72 True relocation, inconsistency = 12405408 129675882 129676725 126962414 126961571 NC_060925.1 CM021568.2 98.46 True local misassembly 129676001 129678297 126966234 126963938 NC_060925.1 CM021568.2 98.43 True local misassembly 129676096 129679271 126969506 126966351 NC_060925.1 CM021568.2 97.36 True relocation, inconsistency = -8462812 138135325 138137726 126973089 126970688 NC_060925.1 CM021568.2 96.79 True relocation, inconsistency = -3968429 142101320 142103719 126975523 126973124 NC_060925.1 CM021568.2 97.5 True local misassembly 142105968 142106643 126976199 126975524 NC_060925.1 CM021568.2 96.65 True indel: indel (<= 5bp) 142105254 142105967 126976916 126976203 NC_060925.1 CM021568.2 96.78 True local misassembly 142103714 142105136 126978694 126977272 NC_060925.1 CM021568.2 98.45 True local misassembly 142101981 142103055 126980295 126979221 NC_060925.1 CM021568.2 97.61 True relocation, inconsistency = 11476988 130621804 130624992 126983484 126980296 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = -9078043 139697936 139699846 126985395 126983485 NC_060925.1 CM021568.2 98.06 True indel: indel (> 5bp) 139697175 139697779 126986123 126985519 NC_060925.1 CM021568.2 97.69 True indel: indel (<= 5bp) 139696610 139697174 126986689 126986125 NC_060925.1 CM021568.2 97.7 True local misassembly 139694497 139696382 126988575 126986690 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = -1276046 140962692 140963310 126996426 126995808 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = -1013842 141970617 141976533 127002342 126996427 NC_060925.1 CM021568.2 98.36 True local misassembly 141970836 141972392 127003899 127002343 NC_060925.1 CM021568.2 98.25 True relocation, inconsistency = 12294235 129672008 129675405 127008467 127005095 NC_060925.1 CM021568.2 97.94 True relocation, inconsistency = -10094833 139766179 139766840 127009129 127008468 NC_060925.1 CM021568.2 97.33 True indel: indel (> 5bp) 139765380 139766155 127009905 127009130 NC_060925.1 CM021568.2 97.83 True relocation, inconsistency = 10089531 129672008 129675848 127013773 127009906 NC_060925.1 CM021568.2 97.67 True relocation, inconsistency = -10840148 140506842 140511992 127019081 127013937 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = -783995 141284738 141288425 127025157 127021493 NC_060925.1 CM021568.2 98.24 True relocation, inconsistency = 5682226 135593354 135597961 127034240 127029708 NC_060925.1 CM021568.2 95.88 True relocation, inconsistency = -5321071 140910657 140913920 127038008 127034745 NC_060925.1 CM021568.2 97.52 True local misassembly 140910149 140912890 127040756 127038009 NC_060925.1 CM021568.2 97.07 True relocation, inconsistency = 11245450 129661393 129664575 127044064 127040880 NC_060925.1 CM021568.2 97.8 True relocation, inconsistency = 2541320 127113761 127118723 127045414 127050326 NC_060925.1 CM021568.2 97.14 True relocation, inconsistency = 6446384 133565108 133566389 127051610 127050327 NC_060925.1 CM021568.2 97.32 True relocation, inconsistency = -7013533 140574467 140576652 127055781 127053599 NC_060925.1 CM021568.2 98.49 True relocation, inconsistency = 800911 139770630 139771484 127058707 127057853 NC_060925.1 CM021568.2 97.54 True indel: indel (> 5bp) 139769387 139770616 127059937 127058708 NC_060925.1 CM021568.2 97.89 True local misassembly 139768784 139769386 127060641 127060039 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = 10088477 129677578 129678255 127063370 127062693 NC_060925.1 CM021568.2 98.23 True local misassembly 129675938 129679132 127066625 127063495 NC_060925.1 CM021568.2 95.71 True relocation, inconsistency = -16462 129691158 129692140 127067867 127066885 NC_060925.1 CM021568.2 98.27 True indel: indel (<= 5bp) 129688609 129690891 127070420 127068138 NC_060925.1 CM021568.2 96.93 True relocation, inconsistency = 8940 129673761 129679668 127076230 127070421 NC_060925.1 CM021568.2 95.58 True relocation, inconsistency = -12305414 141974265 141976992 127081130 127078413 NC_060925.1 CM021568.2 98.39 True relocation, inconsistency = 3124461 138848040 138849373 127082894 127081561 NC_060925.1 CM021568.2 99.48 True relocation, inconsistency = 9174170 129671274 129672579 127085490 127084185 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 352110 129311656 129316940 127092945 127087714 NC_060925.1 CM021568.2 97.73 True indel: indel (> 5bp) 129302057 129311534 127102468 127093008 NC_060925.1 CM021568.2 96.56 True relocation, inconsistency = -284407 129571044 129586463 127117888 127102469 NC_060925.1 CM021568.2 98.93 True relocation, inconsistency = 2222106 127337321 127343609 127117889 127124168 NC_060925.1 CM021568.2 97.64 True relocation, inconsistency = 2277147 129620757 129638043 127141663 127124169 NC_060925.1 CM021568.2 97.89 True relocation, inconsistency = 280591 129330673 129340165 127151105 127141664 NC_060925.1 CM021568.2 98.29 True relocation, inconsistency = -208791 129529429 129539463 127161139 127151106 NC_060925.1 CM021568.2 99.32 True relocation, inconsistency = 192806 129330654 129336622 127167057 127161140 NC_060925.1 CM021568.2 98.33 True relocation, inconsistency = -204570 129531739 129535173 127170542 127167108 NC_060925.1 CM021568.2 98.56 True relocation, inconsistency = 9610 129495374 129522128 127198024 127170543 NC_060925.1 CM021568.2 95.97 True relocation, inconsistency = 2254683 127215101 127240690 127198025 127223599 NC_060925.1 CM021568.2 98.74 True local misassembly 127242416 127262921 127225351 127245852 NC_060925.1 CM021568.2 99.04 True relocation, inconsistency = -156721 127106234 127106869 127245886 127246521 NC_060925.1 CM021568.2 98.58 True indel: indel (> 5bp) 127106896 127107530 127246522 127247156 NC_060925.1 CM021568.2 97.8 True relocation, inconsistency = 194944 127302615 127315779 127247297 127260383 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 13730913 141047197 141048066 127261253 127260384 NC_060925.1 CM021568.2 97.09 True relocation, inconsistency = 14100144 126944409 126947052 127261254 127263903 NC_060925.1 CM021568.2 95.79 True relocation, inconsistency = 144087 127092508 127095065 127265272 127267780 NC_060925.1 CM021568.2 97.82 True relocation, inconsistency = 159945 127255011 127264856 127267781 127277632 NC_060925.1 CM021568.2 98.18 True relocation, inconsistency = 137494 127402351 127405975 127277633 127281261 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 1680399 129088644 129095240 127287935 127281262 NC_060925.1 CM021568.2 96.74 True relocation, inconsistency = 1765747 127294515 127322896 127287936 127316356 NC_060925.1 CM021568.2 98.8 True relocation, inconsistency = 85673 127408570 127409677 127316357 127317464 NC_060925.1 CM021568.2 98.43 True relocation, inconsistency = -103418 127308070 127313121 127319275 127324353 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 17684 127330806 127332812 127324354 127326360 NC_060925.1 CM021568.2 98.34 True relocation, inconsistency = 10994 127343807 127358297 127326361 127340876 NC_060925.1 CM021568.2 98.79 True fake: not a misassembly (possible transposable element) 129257986 129264369 127347243 127340877 NC_060925.1 CM021568.2 97.64 True fake: not a misassembly (possible transposable element) 127364948 127378037 127347560 127360650 NC_060925.1 CM021568.2 98.53 True indel: indel (> 5bp) 127378156 127386785 127360710 127369227 NC_060925.1 CM021568.2 96.05 True relocation, inconsistency = -165601 127221185 127227557 127369228 127375486 NC_060925.1 CM021568.2 96.4 True relocation, inconsistency = -143752 127083979 127086931 127375660 127378589 NC_060925.1 CM021568.2 98.17 True relocation, inconsistency = 9552 127096618 127101723 127378724 127383825 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 299758 127401652 127411024 127383996 127393375 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = -84267 127326758 127330430 127393376 127397051 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 66558 127396989 127399089 127397052 127399189 NC_060925.1 CM021568.2 97.38 True relocation, inconsistency = 17861 127416951 127447607 127399190 127429761 NC_060925.1 CM021568.2 99.14 True fake: not a misassembly (possible transposable element) 127435510 127440189 127431304 127435967 NC_060925.1 CM021568.2 96.94 True fake: not a misassembly (possible transposable element) 127464631 127478514 127446846 127460758 NC_060925.1 CM021568.2 99.03 True indel: stretch of mismatches 127478808 127481388 127461052 127463655 NC_060925.1 CM021568.2 97.54 True relocation, inconsistency = -16738 127464884 127468282 127463889 127467315 NC_060925.1 CM021568.2 97.75 True relocation, inconsistency = 13114545 140583886 140585137 127468641 127467390 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = 12977244 127486349 127606641 127468642 127588665 NC_060925.1 CM021568.2 98.5 True indel: indel (> 5bp) 127606801 127620309 127588885 127602333 NC_060925.1 CM021568.2 98.79 True indel: indel (<= 5bp) 127620424 127626487 127602453 127608492 NC_060925.1 CM021568.2 97.28 True local misassembly 127631158 127631673 127613082 127613597 NC_060925.1 CM021568.2 99.03 True local misassembly 127633238 127633846 127614997 127615605 NC_060925.1 CM021568.2 99.84 True indel: indel (> 5bp) 127634119 127634634 127615898 127616413 NC_060925.1 CM021568.2 99.61 True local misassembly 127638231 127639332 127619894 127620995 NC_060925.1 CM021568.2 96.19 True indel: indel (> 5bp) 127639643 127640484 127621313 127622149 NC_060925.1 CM021568.2 98.69 True indel: indel (> 5bp) 127640791 127653451 127622446 127635011 NC_060925.1 CM021568.2 98.53 True local misassembly 127655155 127666227 127636665 127647717 NC_060925.1 CM021568.2 98.6 True local misassembly 127668709 127673847 127650073 127655235 NC_060925.1 CM021568.2 97.43 True indel: indel (<= 5bp) 127673931 128061965 127655314 128042283 NC_060925.1 CM021568.2 99.36 True relocation, inconsistency = -8675 128054882 128096737 128043875 128085690 NC_060925.1 CM021568.2 98.53 True local misassembly 128095093 128127623 128085691 128118310 NC_060925.1 CM021568.2 99.61 True local misassembly 128127389 128224866 128118754 128216233 NC_060925.1 CM021568.2 99.9 True relocation, inconsistency = 10028 128234895 128735344 128216234 128715910 NC_060925.1 CM021568.2 99.31 True local misassembly 128736120 128827239 128716217 128807327 NC_060925.1 CM021568.2 99.76 True indel: indel (> 5bp) 128827451 129042480 128807574 129022459 NC_060925.1 CM021568.2 99.6 True relocation, inconsistency = 86458 128736400 128738774 129027053 129024678 NC_060925.1 CM021568.2 96.49 True relocation, inconsistency = 288852 129027627 129057894 129027054 129057292 NC_060925.1 CM021568.2 99.52 True local misassembly 129059203 129062297 129058604 129061698 NC_060925.1 CM021568.2 99.4 True local misassembly 129066009 129069508 129061699 129065198 NC_060925.1 CM021568.2 99.13 True relocation, inconsistency = -7772 129061737 129073621 129065199 129077073 NC_060925.1 CM021568.2 99.5 True relocation, inconsistency = 1742722 127305906 127318773 129090041 129077315 NC_060925.1 CM021568.2 97.13 True relocation, inconsistency = 1774526 129093300 129125262 129090042 129121946 NC_060925.1 CM021568.2 98.88 True relocation, inconsistency = 8212 129135638 129141032 129124110 129129528 NC_060925.1 CM021568.2 98.3 True indel: indel (> 5bp) 129141096 129142501 129129651 129131031 NC_060925.1 CM021568.2 96.49 True relocation, inconsistency = -19270 129123232 129132979 129131032 129140779 NC_060925.1 CM021568.2 99.46 True fake: not a misassembly (possible transposable element) 129149437 129150687 129140780 129142030 NC_060925.1 CM021568.2 98.7 True fake: not a misassembly (possible transposable element) 129134316 129176831 129142031 129184522 NC_060925.1 CM021568.2 99.25 True relocation, inconsistency = 462867 129639699 129643700 129184523 129188513 NC_060925.1 CM021568.2 98.28 True relocation, inconsistency = -510792 129132909 129145095 129188514 129200701 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = 47915 129193011 129254372 129200702 129262092 NC_060925.1 CM021568.2 99.14 True relocation, inconsistency = -145668 129109209 129111937 129262597 129265325 NC_060925.1 CM021568.2 98.57 True relocation, inconsistency = 145667 129257605 129269363 129265326 129277091 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = 1958971 127296782 127298633 129278943 129277092 NC_060925.1 CM021568.2 98.46 True relocation, inconsistency = -114243 127403600 127411024 129286318 129278944 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 1867536 129278561 129289134 129286319 129296916 NC_060925.1 CM021568.2 98.65 True relocation, inconsistency = 2244992 127029848 127033568 129300559 129296917 NC_060925.1 CM021568.2 96.51 True relocation, inconsistency = 17696 127002668 127012151 129310063 129300560 NC_060925.1 CM021568.2 98.15 True relocation, inconsistency = 2290213 129302365 129326518 129310064 129334228 NC_060925.1 CM021568.2 99.0 True fake: not a misassembly (possible transposable element) 127316252 127321726 129339708 129334229 NC_060925.1 CM021568.2 98.31 True fake: not a misassembly (possible transposable element) 129333013 129339613 129340698 129347300 NC_060925.1 CM021568.2 98.85 True local misassembly 129340167 129346856 129347748 129354386 NC_060925.1 CM021568.2 97.83 True relocation, inconsistency = 7200802 136547659 136549293 129354387 129356000 NC_060925.1 CM021568.2 95.6 True relocation, inconsistency = 9483539 127062109 127063101 129358011 129357019 NC_060925.1 CM021568.2 97.48 True indel: indel (> 5bp) 127061240 127061896 129358827 129358171 NC_060925.1 CM021568.2 97.72 True indel: indel (> 5bp) 127060625 127061239 129359468 129358854 NC_060925.1 CM021568.2 97.72 True relocation, inconsistency = 2290761 129352067 129364074 129359535 129371483 NC_060925.1 CM021568.2 98.2 True relocation, inconsistency = -49708 129314367 129317818 129371484 129374935 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = 49649 129367468 129393179 129374936 129400646 NC_060925.1 CM021568.2 98.87 True fake: not a misassembly (possible transposable element) 127305133 127309450 129404887 129400647 NC_060925.1 CM021568.2 97.57 True fake: not a misassembly (possible transposable element) 129403437 129413212 129410915 129420542 NC_060925.1 CM021568.2 96.63 True indel: indel (> 5bp) 129413288 129421932 129420543 129429288 NC_060925.1 CM021568.2 97.83 True relocation, inconsistency = 2424681 126976811 126988606 129441108 129429289 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = 2445310 129436028 129460658 129443220 129468195 NC_060925.1 CM021568.2 97.68 True relocation, inconsistency = -194199 129266460 129268290 129468196 129470025 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 33903 129302194 129309992 129470026 129477836 NC_060925.1 CM021568.2 97.82 True relocation, inconsistency = 304501 129614727 129621754 129478070 129485238 NC_060925.1 CM021568.2 96.88 True relocation, inconsistency = -315787 129305968 129309257 129485239 129488445 NC_060925.1 CM021568.2 97.0 True relocation, inconsistency = 209947 129519383 129522350 129488624 129491581 NC_060925.1 CM021568.2 96.75 True relocation, inconsistency = -77442 129444963 129446683 129491636 129493356 NC_060925.1 CM021568.2 99.42 True relocation, inconsistency = -296110 129150897 129154757 129493680 129497492 NC_060925.1 CM021568.2 95.96 True relocation, inconsistency = 1935032 127212348 127215549 129500954 129497808 NC_060925.1 CM021568.2 96.78 True relocation, inconsistency = 1955704 129171254 129173921 129500955 129503648 NC_060925.1 CM021568.2 97.7 True relocation, inconsistency = 313918 129490516 129491152 129506325 129506961 NC_060925.1 CM021568.2 98.59 True indel: indel (<= 5bp) 129491367 129499628 129507178 129515364 NC_060925.1 CM021568.2 98.16 True fake: not a misassembly (possible transposable element) 129518260 129522475 129515452 129519647 NC_060925.1 CM021568.2 96.68 True fake: not a misassembly (possible transposable element) 129504134 129507503 129519888 129523234 NC_060925.1 CM021568.2 97.13 True relocation, inconsistency = 2180104 127310878 127324029 129536417 129523235 NC_060925.1 CM021568.2 98.72 True relocation, inconsistency = -12288 127313525 127323165 129546087 129536418 NC_060925.1 CM021568.2 98.8 True relocation, inconsistency = 2207179 129531267 129537367 129547010 129553058 NC_060925.1 CM021568.2 98.25 True relocation, inconsistency = -42146 129495358 129496198 129553195 129554009 NC_060925.1 CM021568.2 96.98 True local misassembly 129489217 129495276 129554010 129560021 NC_060925.1 CM021568.2 95.98 True relocation, inconsistency = -128142 129367713 129369857 129560600 129562745 NC_060925.1 CM021568.2 97.18 True relocation, inconsistency = 1956723 127407285 127410989 129566424 129562746 NC_060925.1 CM021568.2 98.16 True relocation, inconsistency = 2139820 129550882 129562003 129566497 129577584 NC_060925.1 CM021568.2 98.65 True relocation, inconsistency = 2163547 127386537 127387334 129578406 129577585 NC_060925.1 CM021568.2 97.88 True relocation, inconsistency = 293695 127088037 127092392 129583211 129578856 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 2016816 129109209 129111937 129583212 129585940 NC_060925.1 CM021568.2 98.34 True relocation, inconsistency = 451557 129563495 129570113 129585941 129592573 NC_060925.1 CM021568.2 98.07 True local misassembly 129563264 129572918 129592574 129602244 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 2421702 127140421 127141561 129603411 129602245 NC_060925.1 CM021568.2 97.44 True relocation, inconsistency = -273898 127404417 127408569 129613290 129609161 NC_060925.1 CM021568.2 98.12 True relocation, inconsistency = 2191802 129600566 129604277 129613485 129617200 NC_060925.1 CM021568.2 98.95 True fake: not a misassembly (possible transposable element) 129621891 129624346 129617201 129619658 NC_060925.1 CM021568.2 98.9 True fake: not a misassembly (possible transposable element) 129604613 129612494 129620239 129628152 NC_060925.1 CM021568.2 98.74 True local misassembly 129605713 129612406 129628153 129634851 NC_060925.1 CM021568.2 98.24 True relocation, inconsistency = 2301732 127300877 127301910 129637955 129636922 NC_060925.1 CM021568.2 98.94 True local misassembly 127299574 127300632 129639014 129637956 NC_060925.1 CM021568.2 98.3 True indel: indel (> 5bp) 127296976 127299547 129641586 129639015 NC_060925.1 CM021568.2 99.14 True indel: indel (<= 5bp) 127296421 127296975 129642142 129641588 NC_060925.1 CM021568.2 98.92 True indel: indel (> 5bp) 127295318 127296394 129643219 129642143 NC_060925.1 CM021568.2 99.16 True indel: indel (<= 5bp) 127294515 127295317 129644023 129643221 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = 2228086 129525082 129526420 129645702 129647040 NC_060925.1 CM021568.2 98.88 True local misassembly 129526629 129527211 129647041 129647623 NC_060925.1 CM021568.2 98.28 True indel: indel (<= 5bp) 129527212 129527798 129647627 129648213 NC_060925.1 CM021568.2 98.98 True indel: indel (<= 5bp) 129527799 129528357 129648215 129648773 NC_060925.1 CM021568.2 98.39 True indel: indel (<= 5bp) 129528358 129529742 129648777 129650161 NC_060925.1 CM021568.2 98.54 True relocation, inconsistency = 104887 129634630 129644293 129650162 129659807 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = -499877 129144417 129145159 129659808 129660527 NC_060925.1 CM021568.2 98.08 True relocation, inconsistency = 6323998 135470365 135471802 129661735 129663200 NC_060925.1 CM021568.2 96.18 True relocation, inconsistency = -5824083 129648139 129665862 129663620 129681301 NC_060925.1 CM021568.2 98.39 True indel: stretch of mismatches 129665863 129672080 129681302 129687520 NC_060925.1 CM021568.2 98.76 True local misassembly 129674324 129677039 129687521 129690232 NC_060925.1 CM021568.2 98.55 True relocation, inconsistency = 10742 129687782 129698588 129690233 129701063 NC_060925.1 CM021568.2 98.87 True relocation, inconsistency = 23663 129722252 129729048 129701064 129707860 NC_060925.1 CM021568.2 99.04 True local misassembly 129729933 129731641 129708373 129710081 NC_060925.1 CM021568.2 99.3 True local misassembly 129732110 129735016 129710082 129712988 NC_060925.1 CM021568.2 99.31 True indel: indel (> 5bp) 129735040 129735631 129712989 129713580 NC_060925.1 CM021568.2 99.32 True local misassembly 129735632 129736177 129713728 129714273 NC_060925.1 CM021568.2 97.34 True local misassembly 129743015 129749752 129714274 129721011 NC_060925.1 CM021568.2 99.45 True local misassembly 129751504 129757996 129721013 129727531 NC_060925.1 CM021568.2 98.76 True indel: stretch of mismatches 129757997 129778158 129727532 129747670 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = -33974 129744185 129746584 129747671 129750070 NC_060925.1 CM021568.2 97.98 True relocation, inconsistency = 11521900 141268783 141270430 129750369 129752016 NC_060925.1 CM021568.2 98.55 True relocation, inconsistency = -11487810 129782621 129790803 129752017 129760199 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -16451 129790902 129792266 129776749 129778113 NC_060925.1 CM021568.2 99.12 True relocation, inconsistency = 16448 129808715 129826018 129778114 129795421 NC_060925.1 CM021568.2 99.47 True fake: not a misassembly (possible transposable element) 142146372 142149490 129802035 129805120 NC_060925.1 CM021568.2 96.63 True fake: not a misassembly (possible transposable element) 129836087 129889988 129805300 129859202 NC_060925.1 CM021568.2 99.87 True relocation, inconsistency = 4898951 134848161 134852592 129918424 129922865 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = -5142038 129718366 129719776 129930677 129932086 NC_060925.1 CM021568.2 98.23 True relocation, inconsistency = 8361221 138081002 138086275 129932091 129937270 NC_060925.1 CM021568.2 96.95 True relocation, inconsistency = -2497449 135592729 135601651 129941173 129950145 NC_060925.1 CM021568.2 98.19 True relocation, inconsistency = -1176859 134424793 134426511 129950146 129951887 NC_060925.1 CM021568.2 98.06 True relocation, inconsistency = -4341475 130085056 130090539 129951907 129957389 NC_060925.1 CM021568.2 99.36 True relocation, inconsistency = 10470888 140565690 140566623 129961652 129962588 NC_060925.1 CM021568.2 97.77 True relocation, inconsistency = -10146521 130420103 130430000 129962589 129972489 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = 4200617 134630618 134634448 129972490 129976243 NC_060925.1 CM021568.2 96.57 True relocation, inconsistency = 5941883 140576332 140583916 129976244 129983755 NC_060925.1 CM021568.2 96.83 True relocation, inconsistency = -10593306 129990611 129992721 129983756 129985866 NC_060925.1 CM021568.2 99.56 True local misassembly 129992722 129993767 129986335 129987380 NC_060925.1 CM021568.2 98.66 True indel: indel (> 5bp) 129993820 129994603 129987381 129988164 NC_060925.1 CM021568.2 99.49 True local misassembly 129989323 129992721 129988185 129991583 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = 10583525 140576332 140583916 129991669 129999399 NC_060925.1 CM021568.2 96.04 True relocation, inconsistency = -10593306 129990611 129992897 129999400 130001687 NC_060925.1 CM021568.2 98.06 True relocation, inconsistency = 2226919 132225925 132227996 130007796 130009867 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = -296860 131936415 131940010 130015146 130018741 NC_060925.1 CM021568.2 99.77 True relocation, inconsistency = -1813987 130126024 130133403 130018742 130026117 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = 4253898 134389059 134394350 130027875 130033165 NC_060925.1 CM021568.2 99.38 True relocation, inconsistency = -2410096 131984255 132006009 130033166 130055045 NC_060925.1 CM021568.2 98.94 True relocation, inconsistency = -2170244 129835975 129846675 130055255 130065955 NC_060925.1 CM021568.2 99.45 True relocation, inconsistency = -10657 129836019 129846675 130065956 130076612 NC_060925.1 CM021568.2 99.38 True relocation, inconsistency = 30193 129876869 129883973 130076613 130083715 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = 212916 130096890 130100375 130083716 130087200 NC_060925.1 CM021568.2 99.16 True local misassembly 130097291 130100764 130087201 130090672 NC_060925.1 CM021568.2 98.78 True relocation, inconsistency = 6981427 137082192 137088797 130090673 130097289 NC_060925.1 CM021568.2 98.85 True relocation, inconsistency = -7094436 129994362 129999826 130097290 130102780 NC_060925.1 CM021568.2 98.32 True relocation, inconsistency = 6519150 136518977 136520573 130102781 130104448 NC_060925.1 CM021568.2 97.57 True relocation, inconsistency = -6351364 130171889 130176998 130107128 130112237 NC_060925.1 CM021568.2 99.24 True relocation, inconsistency = -191219 129992613 129994609 130119071 130121067 NC_060925.1 CM021568.2 98.65 True local misassembly 129995052 130000002 130121068 130126018 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 101081 130101104 130103285 130126039 130128220 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = 71962 130175248 130182028 130128221 130135001 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = 4223927 134420074 134424422 130149120 130153491 NC_060925.1 CM021568.2 98.63 True relocation, inconsistency = -4563762 129860661 129873316 130153492 130166148 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = -7104 129866213 129871759 130166149 130171695 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = 7123388 136995357 136996489 130171905 130173037 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = -7160514 129835976 129846675 130173038 130183738 NC_060925.1 CM021568.2 99.32 True local misassembly 129850228 129857332 130183739 130190841 NC_060925.1 CM021568.2 99.5 True relocation, inconsistency = 239557 130096890 130100375 130190842 130194325 NC_060925.1 CM021568.2 99.18 True local misassembly 130097291 130100764 130194326 130197797 NC_060925.1 CM021568.2 98.78 True relocation, inconsistency = 6981427 137082192 137088797 130197798 130204413 NC_060925.1 CM021568.2 98.76 True relocation, inconsistency = -7094436 129994362 129998699 130204414 130208776 NC_060925.1 CM021568.2 98.38 True relocation, inconsistency = 6358102 136356802 136360306 130208777 130212281 NC_060925.1 CM021568.2 99.13 True relocation, inconsistency = -6185059 130175248 130178799 130212282 130215833 NC_060925.1 CM021568.2 99.28 True relocation, inconsistency = 4210259 134389059 134396151 130215834 130222926 NC_060925.1 CM021568.2 99.25 True relocation, inconsistency = -4303976 130093937 130098988 130224688 130229738 NC_060925.1 CM021568.2 99.15 True relocation, inconsistency = 6983203 137082192 137087786 130229739 130235343 NC_060925.1 CM021568.2 98.59 True relocation, inconsistency = -6912539 130175248 130182028 130235344 130242124 NC_060925.1 CM021568.2 99.38 True relocation, inconsistency = -57767 130126023 130135203 130243886 130253066 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = 4319704 134455200 134462458 130253359 130260591 NC_060925.1 CM021568.2 98.98 True relocation, inconsistency = -4601798 129860661 129873316 130260592 130273247 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = -7104 129866213 129871869 130273248 130278904 NC_060925.1 CM021568.2 99.28 True relocation, inconsistency = 216468 130088338 130100276 130278905 130290841 NC_060925.1 CM021568.2 99.29 True relocation, inconsistency = 72430 130172707 130183528 130290842 130301663 NC_060925.1 CM021568.2 99.49 True fake: not a misassembly (possible transposable element) 129696665 129697240 130308856 130309431 NC_060925.1 CM021568.2 97.4 True fake: not a misassembly (possible transposable element) 130197213 130201732 130309928 130314405 NC_060925.1 CM021568.2 98.12 True fake: not a misassembly (possible transposable element) 135481505 135488288 130314639 130321417 NC_060925.1 CM021568.2 98.92 True fake: not a misassembly (possible transposable element) 130214132 130217655 130326806 130330329 NC_060925.1 CM021568.2 99.15 True local misassembly 130224792 130239552 130337502 130352285 NC_060925.1 CM021568.2 99.21 True local misassembly 130270929 130279460 130383697 130392229 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 7714526 137994321 137995767 130392564 130394012 NC_060925.1 CM021568.2 98.9 True relocation, inconsistency = -337286 137658482 137666431 130394013 130401959 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = 2349870 140089001 140093236 130474659 130478907 NC_060925.1 CM021568.2 97.81 True relocation, inconsistency = -903860 139191905 139194916 130481436 130484500 NC_060925.1 CM021568.2 95.27 True relocation, inconsistency = 589185 139789458 139794914 130489857 130495337 NC_060925.1 CM021568.2 96.86 True relocation, inconsistency = 12298332 127490055 127491125 130496403 130495338 NC_060925.1 CM021568.2 96.79 True relocation, inconsistency = 2515434 130015400 130015958 130505244 130505802 NC_060925.1 CM021568.2 97.51 True relocation, inconsistency = 362004 130377963 130384136 130505803 130511976 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = 8117779 138510127 138513301 130520188 130523373 NC_060925.1 CM021568.2 98.43 True relocation, inconsistency = 657463 139193836 139196669 130546445 130549327 NC_060925.1 CM021568.2 96.22 True relocation, inconsistency = 476420 139673090 139674841 130549328 130551079 NC_060925.1 CM021568.2 98.7 True local misassembly 139674842 139675384 130551548 130552090 NC_060925.1 CM021568.2 98.34 True indel: indel (> 5bp) 139675385 139676066 130552114 130552795 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = -8981409 130701618 130711888 130559756 130570004 NC_060925.1 CM021568.2 99.39 True relocation, inconsistency = 10774524 141503451 141508516 130587043 130592108 NC_060925.1 CM021568.2 99.55 True relocation, inconsistency = -5899775 135610066 135610967 130593433 130594334 NC_060925.1 CM021568.2 99.11 True relocation, inconsistency = -5128360 130505548 130509076 130617275 130620805 NC_060925.1 CM021568.2 99.09 True local misassembly 130518986 130528431 130630504 130639927 NC_060925.1 CM021568.2 99.29 True local misassembly 130554141 130560529 130665288 130671763 NC_060925.1 CM021568.2 96.37 True relocation, inconsistency = -852605 129707925 129716446 130671764 130680305 NC_060925.1 CM021568.2 97.35 True relocation, inconsistency = 852627 130569074 130572583 130680306 130683815 NC_060925.1 CM021568.2 98.0 True relocation, inconsistency = 11462570 142050685 142052699 130699347 130701364 NC_060925.1 CM021568.2 98.02 True relocation, inconsistency = -3639517 138413183 138426534 130701365 130714716 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = 1175703 139602595 139614574 130715074 130727076 NC_060925.1 CM021568.2 99.33 True local misassembly 139612822 139617162 130727077 130731417 NC_060925.1 CM021568.2 99.37 True local misassembly 139617631 139622057 130731418 130735844 NC_060925.1 CM021568.2 98.96 True relocation, inconsistency = 8552 139638794 139641177 130744029 130746412 NC_060925.1 CM021568.2 98.57 True indel: indel (<= 5bp) 139641178 139643182 130746414 130748418 NC_060925.1 CM021568.2 98.5 True indel: indel (<= 5bp) 139643277 139644378 130748517 130749618 NC_060925.1 CM021568.2 99.1 True local misassembly 139651294 139679887 130749619 130778696 NC_060925.1 CM021568.2 97.81 True relocation, inconsistency = 9791 139689765 139696842 130778783 130785870 NC_060925.1 CM021568.2 99.24 True relocation, inconsistency = 9874 139706717 139708022 130785871 130787176 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = -18189 139689834 139694951 130787177 130792294 NC_060925.1 CM021568.2 99.5 True local misassembly 139698991 139713694 130792295 130806905 NC_060925.1 CM021568.2 98.06 True fake: not a misassembly (possible transposable element) 130497811 130501499 130808602 130812241 NC_060925.1 CM021568.2 97.35 True fake: not a misassembly (possible transposable element) 139715076 139719562 130813080 130817566 NC_060925.1 CM021568.2 98.91 True local misassembly 139721264 139732518 130819268 130830522 NC_060925.1 CM021568.2 99.91 True relocation, inconsistency = -9281636 130453233 130454990 130832873 130834640 NC_060925.1 CM021568.2 98.72 True local misassembly 130453225 130467528 130834641 130848950 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = 9281647 139749176 139756638 130848951 130856335 NC_060925.1 CM021568.2 98.93 True local misassembly 139761147 139777933 130856336 130873018 NC_060925.1 CM021568.2 98.06 True relocation, inconsistency = 280904 140058838 140062875 130873019 130877056 NC_060925.1 CM021568.2 99.61 True local misassembly 140063287 140065308 130877181 130879202 NC_060925.1 CM021568.2 99.75 True local misassembly 140065622 140067191 130879267 130880836 NC_060925.1 CM021568.2 98.6 True indel: indel (> 5bp) 140067192 140069018 130880886 130882712 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = -286356 139788051 139794241 130888101 130894283 NC_060925.1 CM021568.2 95.01 True relocation, inconsistency = -9206296 130587946 130601803 130894284 130907725 NC_060925.1 CM021568.2 96.64 True relocation, inconsistency = 9242824 139844799 139869688 130907897 130932930 NC_060925.1 CM021568.2 99.11 True relocation, inconsistency = -9245185 130624504 130641600 130932931 130950005 NC_060925.1 CM021568.2 99.52 True relocation, inconsistency = 9203011 139844799 139849183 130950193 130954575 NC_060925.1 CM021568.2 99.36 True fake: not a misassembly (possible transposable element) 130634491 130637231 130954576 130957316 NC_060925.1 CM021568.2 99.78 True fake: not a misassembly (possible transposable element) 139853622 139873262 130957317 130976767 NC_060925.1 CM021568.2 98.83 True relocation, inconsistency = -300921 139574087 139586302 130978513 130990728 NC_060925.1 CM021568.2 99.83 True local misassembly 139586303 139587463 130991070 130992230 NC_060925.1 CM021568.2 100.0 True relocation, inconsistency = 15416 139602880 139613479 130992231 131002830 NC_060925.1 CM021568.2 99.71 True indel: indel (> 5bp) 139613480 139614141 131002854 131003515 NC_060925.1 CM021568.2 97.71 True local misassembly 139612389 139617162 131003516 131008289 NC_060925.1 CM021568.2 98.7 True local misassembly 139617631 139622057 131008290 131012716 NC_060925.1 CM021568.2 98.92 True relocation, inconsistency = 8598 139631853 139645168 131013914 131027233 NC_060925.1 CM021568.2 96.24 True local misassembly 139652081 139679887 131027234 131055519 NC_060925.1 CM021568.2 97.92 True relocation, inconsistency = 9791 139689765 139696842 131055606 131062693 NC_060925.1 CM021568.2 99.22 True relocation, inconsistency = 9874 139706717 139708022 131062694 131063999 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = -18189 139689834 139696842 131064000 131071015 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = 9874 139706717 139708009 131071016 131072308 NC_060925.1 CM021568.2 99.38 True indel: indel (> 5bp) 139708023 139710497 131072309 131074783 NC_060925.1 CM021568.2 98.63 True local misassembly 139710962 139712487 131074784 131076309 NC_060925.1 CM021568.2 98.62 True local misassembly 139706237 139713694 131076396 131083849 NC_060925.1 CM021568.2 98.51 True relocation, inconsistency = -9217569 130496126 130498411 131083850 131086135 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = 9606191 140104603 140108502 131086136 131090009 NC_060925.1 CM021568.2 98.17 True relocation, inconsistency = -393427 139715076 139717711 131090010 131092645 NC_060925.1 CM021568.2 98.79 True indel: stretch of mismatches 139717712 139729683 131092646 131104617 NC_060925.1 CM021568.2 99.88 True relocation, inconsistency = 1704665 141434349 141437183 131104618 131107452 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = -10986301 130453233 130454990 131109803 131111570 NC_060925.1 CM021568.2 98.72 True local misassembly 130453225 130467528 131111571 131125880 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = 9281647 139749176 139755032 131125881 131131737 NC_060925.1 CM021568.2 99.65 True local misassembly 139759541 139777933 131131738 131150118 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = 280904 140058838 140062875 131150119 131154156 NC_060925.1 CM021568.2 99.45 True local misassembly 140063287 140065338 131154281 131156332 NC_060925.1 CM021568.2 99.71 True local misassembly 140065589 140067191 131156333 131157935 NC_060925.1 CM021568.2 99.25 True indel: indel (> 5bp) 140067192 140069176 131157985 131159969 NC_060925.1 CM021568.2 98.94 True relocation, inconsistency = -10361526 129707925 129711968 131160244 131164281 NC_060925.1 CM021568.2 97.23 True relocation, inconsistency = 10075164 139788051 139788660 131165200 131165809 NC_060925.1 CM021568.2 98.2 True indel: indel (> 5bp) 139788785 139791241 131165924 131168380 NC_060925.1 CM021568.2 98.25 True indel: indel (<= 5bp) 139791242 139794182 131168382 131171322 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = -9206296 130587887 130601803 131171323 131184823 NC_060925.1 CM021568.2 96.46 True relocation, inconsistency = 9242824 139844799 139870414 131184995 131210607 NC_060925.1 CM021568.2 98.52 True relocation, inconsistency = -9245332 130625083 130641600 131210608 131227078 NC_060925.1 CM021568.2 98.97 True relocation, inconsistency = 9203011 139844799 139849183 131227266 131231648 NC_060925.1 CM021568.2 99.36 True local misassembly 139850190 139852930 131231649 131234389 NC_060925.1 CM021568.2 99.93 True local misassembly 139853622 139871319 131234390 131251893 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = -10184884 129707925 129711968 131273383 131277430 NC_060925.1 CM021568.2 97.6 True relocation, inconsistency = 6203374 135917071 135921945 131279159 131284040 NC_060925.1 CM021568.2 98.14 True relocation, inconsistency = -5288127 130636459 130660817 131286681 131311062 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = 9226337 139905394 139912228 131329302 131336146 NC_060925.1 CM021568.2 99.42 True relocation, inconsistency = -9483093 130442940 130448743 131349951 131355754 NC_060925.1 CM021568.2 99.56 True relocation, inconsistency = 256898 130705642 130723638 131355755 131373767 NC_060925.1 CM021568.2 99.57 True relocation, inconsistency = 5822617 136548458 136552067 131375970 131379579 NC_060925.1 CM021568.2 98.42 True relocation, inconsistency = 5125174 141677667 141680303 131380005 131382615 NC_060925.1 CM021568.2 97.84 True relocation, inconsistency = -10947645 130732860 130746131 131382817 131396089 NC_060925.1 CM021568.2 99.79 True local misassembly 130770150 130785486 131420178 131435537 NC_060925.1 CM021568.2 99.45 True relocation, inconsistency = 4049633 134835120 134838146 131435538 131438564 NC_060925.1 CM021568.2 97.56 True relocation, inconsistency = 1867441 136744686 136746152 131477663 131479129 NC_060925.1 CM021568.2 97.92 True relocation, inconsistency = -5917120 130829033 130840784 131479130 131490841 NC_060925.1 CM021568.2 99.4 True indel: stretch of mismatches 130840785 130858065 131490842 131508123 NC_060925.1 CM021568.2 99.82 True fake: not a misassembly (possible transposable element) 130377582 130383582 131516439 131522438 NC_060925.1 CM021568.2 98.98 True fake: not a misassembly (possible transposable element) 130872339 130890350 131522439 131540461 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -524244 130377582 130384136 131551937 131558491 NC_060925.1 CM021568.2 98.93 True relocation, inconsistency = -680360 129734023 129735016 131588738 131589731 NC_060925.1 CM021568.2 98.69 True indel: indel (> 5bp) 129735040 129738048 131589732 131592740 NC_060925.1 CM021568.2 98.4 True indel: indel (> 5bp) 129738049 129739012 131592816 131593779 NC_060925.1 CM021568.2 98.65 True local misassembly 129739156 129739889 131593780 131594513 NC_060925.1 CM021568.2 99.05 True relocation, inconsistency = 1204503 130951074 130957659 131601195 131607780 NC_060925.1 CM021568.2 98.56 True fake: not a misassembly (possible transposable element) 135502229 135505976 131639001 131642738 NC_060925.1 CM021568.2 98.66 True fake: not a misassembly (possible transposable element) 130992666 131018478 131642739 131668520 NC_060925.1 CM021568.2 99.37 True indel: stretch of mismatches 131018812 131025553 131668854 131675594 NC_060925.1 CM021568.2 99.17 True relocation, inconsistency = 9044330 140070215 140071069 131675926 131676790 NC_060925.1 CM021568.2 97.35 True relocation, inconsistency = -6844313 133226757 133233192 131676791 131683200 NC_060925.1 CM021568.2 98.2 True relocation, inconsistency = -3325696 130000849 130003019 131776553 131778674 NC_060925.1 CM021568.2 96.11 True relocation, inconsistency = 1462769 131465789 131473679 131778675 131786561 NC_060925.1 CM021568.2 98.73 True relocation, inconsistency = -337163 131142211 131161745 131792256 131811802 NC_060925.1 CM021568.2 99.58 True local misassembly 131166853 131190773 131816910 131840815 NC_060925.1 CM021568.2 99.59 True fake: not a misassembly (possible transposable element) 131552292 131558766 131854718 131861039 NC_060925.1 CM021568.2 97.05 True fake: not a misassembly (possible transposable element) 131229801 131246008 131879423 131895607 NC_060925.1 CM021568.2 99.54 True relocation, inconsistency = 3802406 135048415 135050016 131895608 131897209 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = 5058978 140127187 140130272 131915402 131918441 NC_060925.1 CM021568.2 97.3 True relocation, inconsistency = -3194122 136936151 136947390 131918442 131929681 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = -7104 136940287 136944672 131929682 131934067 NC_060925.1 CM021568.2 99.53 True relocation, inconsistency = 986470 137931143 137932509 131934068 131935434 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = -6262983 131669527 131680250 131935435 131946158 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = -383613 131296638 131299508 131946159 131949003 NC_060925.1 CM021568.2 99.05 True local misassembly 131301959 131331272 131951414 131980727 NC_060925.1 CM021568.2 99.88 True fake: not a misassembly (possible transposable element) 140063287 140064739 131981590 131983075 NC_060925.1 CM021568.2 96.34 True fake: not a misassembly (possible transposable element) 131333621 131343893 131983076 131993348 NC_060925.1 CM021568.2 99.36 True relocation, inconsistency = -1014877 130340325 130342871 132004657 132007178 NC_060925.1 CM021568.2 96.35 True relocation, inconsistency = -637606 129705266 129705784 132007179 132007697 NC_060925.1 CM021568.2 97.53 True relocation, inconsistency = 9921653 139628094 139631781 132008354 132012042 NC_060925.1 CM021568.2 97.34 True relocation, inconsistency = -8269130 131362652 131377339 132012043 132026726 NC_060925.1 CM021568.2 99.56 True local misassembly 131468409 131471938 132117925 132121454 NC_060925.1 CM021568.2 99.94 True fake: not a misassembly (possible transposable element) 129734128 129735016 132130162 132131050 NC_060925.1 CM021568.2 97.98 True fake: not a misassembly (possible transposable element) 131481816 131489467 132131418 132139022 NC_060925.1 CM021568.2 98.54 True fake: not a misassembly (possible transposable element) 127496460 127497370 132157721 132156811 NC_060925.1 CM021568.2 98.04 True fake: not a misassembly (possible transposable element) 131508192 131526457 132157722 132175988 NC_060925.1 CM021568.2 99.8 True indel: stretch of mismatches 131526458 131546602 132175989 132196133 NC_060925.1 CM021568.2 99.53 True local misassembly 131552326 131563127 132201777 132212578 NC_060925.1 CM021568.2 99.8 True local misassembly 131567928 131601311 132217390 132250747 NC_060925.1 CM021568.2 99.72 True local misassembly 131602464 131653937 132251900 132303373 NC_060925.1 CM021568.2 99.93 True relocation, inconsistency = 3473155 135157991 135161756 132334272 132338011 NC_060925.1 CM021568.2 98.25 True relocation, inconsistency = 6547133 141717562 141723811 132346684 132352943 NC_060925.1 CM021568.2 97.48 True relocation, inconsistency = 14261987 127444711 127446359 132363807 132362159 NC_060925.1 CM021568.2 98.48 True local misassembly 127443329 127444118 132365058 132364269 NC_060925.1 CM021568.2 98.73 True indel: indel (<= 5bp) 127442655 127443327 132365731 132365059 NC_060925.1 CM021568.2 98.51 True local misassembly 127441206 127442264 132366790 132365732 NC_060925.1 CM021568.2 99.15 True relocation, inconsistency = 12324476 139772870 139773380 132372920 132373430 NC_060925.1 CM021568.2 98.63 True local misassembly 139773848 139775225 132373431 132374808 NC_060925.1 CM021568.2 98.48 True relocation, inconsistency = 287927 140063835 140064741 132375491 132376397 NC_060925.1 CM021568.2 97.79 True indel: indel (> 5bp) 140064742 140065345 132376421 132377024 NC_060925.1 CM021568.2 96.85 True indel: indel (> 5bp) 140065622 140066272 132377328 132377978 NC_060925.1 CM021568.2 96.47 True indel: indel (> 5bp) 140066347 140066867 132377979 132378499 NC_060925.1 CM021568.2 97.12 True relocation, inconsistency = 892005 140959239 140963159 132378866 132382788 NC_060925.1 CM021568.2 98.09 True relocation, inconsistency = -5301302 135661858 135662370 132382789 132383301 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = -3928237 131744449 131751960 132393617 132401128 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = 5539112 137291696 137293136 132401752 132403192 NC_060925.1 CM021568.2 96.95 True relocation, inconsistency = -7298269 129995092 129996177 132403417 132404502 NC_060925.1 CM021568.2 97.97 True relocation, inconsistency = 1759056 131755605 131764017 132404874 132413296 NC_060925.1 CM021568.2 99.1 True fake: not a misassembly (possible transposable element) 141287249 141289083 132417053 132418887 NC_060925.1 CM021568.2 98.58 True fake: not a misassembly (possible transposable element) 131804903 131820489 132454113 132469722 NC_060925.1 CM021568.2 99.56 True local misassembly 131876074 131899128 132525280 132548329 NC_060925.1 CM021568.2 99.83 True fake: not a misassembly (possible transposable element) 139811873 139814995 132548330 132551452 NC_060925.1 CM021568.2 99.14 True fake: not a misassembly (possible transposable element) 131915342 131936981 132564568 132586204 NC_060925.1 CM021568.2 99.64 True relocation, inconsistency = 143512 132145830 132146369 132651541 132652080 NC_060925.1 CM021568.2 99.07 True indel: indel (> 5bp) 132146370 132147779 132652107 132653516 NC_060925.1 CM021568.2 99.15 True local misassembly 132147859 132148813 132654065 132655019 NC_060925.1 CM021568.2 98.74 True relocation, inconsistency = -143056 132050093 132053792 132699355 132703055 NC_060925.1 CM021568.2 99.11 True local misassembly 132055139 132065806 132704404 132715070 NC_060925.1 CM021568.2 99.32 True local misassembly 132076105 132092638 132725242 132741780 NC_060925.1 CM021568.2 99.43 True local misassembly 132099134 132109565 132748224 132758656 NC_060925.1 CM021568.2 99.45 True indel: stretch of mismatches 132109566 132115167 132758657 132764254 NC_060925.1 CM021568.2 99.1 True local misassembly 132115931 132126224 132765008 132775212 NC_060925.1 CM021568.2 97.19 True local misassembly 132128469 132133634 132777457 132782636 NC_060925.1 CM021568.2 98.54 True indel: stretch of mismatches 132133635 132147779 132782637 132796735 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = 9988125 142164305 142165395 132825136 132826226 NC_060925.1 CM021568.2 97.62 True indel: indel (> 5bp) 142165419 142166104 132826227 132826912 NC_060925.1 CM021568.2 97.67 True indel: indel (> 5bp) 142166105 142166652 132826935 132827482 NC_060925.1 CM021568.2 97.26 True relocation, inconsistency = -9987906 132179057 132190590 132827793 132839326 NC_060925.1 CM021568.2 99.05 True fake: not a misassembly (possible transposable element) 129709912 129711565 132839327 132840984 NC_060925.1 CM021568.2 97.67 True fake: not a misassembly (possible transposable element) 132200352 132230332 132849129 132879083 NC_060925.1 CM021568.2 99.7 True indel: stretch of mismatches 132230333 132231788 132879084 132880539 NC_060925.1 CM021568.2 98.42 True indel: indel (> 5bp) 132232269 132239240 132880948 132887919 NC_060925.1 CM021568.2 99.68 True local misassembly 132240870 132262488 132889524 132911143 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 971699 133242169 133247441 132919125 132924366 NC_060925.1 CM021568.2 98.33 True relocation, inconsistency = 8043194 141292427 141294169 132926158 132927900 NC_060925.1 CM021568.2 98.28 True relocation, inconsistency = -4157183 137137049 137138944 132927963 132929858 NC_060925.1 CM021568.2 98.95 True relocation, inconsistency = -4857728 132358933 132379013 133007575 133027598 NC_060925.1 CM021568.2 99.09 True relocation, inconsistency = -2631848 129752289 129754151 133032722 133034535 NC_060925.1 CM021568.2 95.22 True relocation, inconsistency = 239230 129994698 129996473 133035852 133037627 NC_060925.1 CM021568.2 98.09 True relocation, inconsistency = 4837648 134834123 134837343 133037629 133040849 NC_060925.1 CM021568.2 97.83 True relocation, inconsistency = -2445217 132392999 132395954 133041722 133044677 NC_060925.1 CM021568.2 98.71 True indel: stretch of mismatches 132395955 132402209 133044678 133050906 NC_060925.1 CM021568.2 98.98 True local misassembly 132487387 132492422 133135808 133140838 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = -2840063 129663730 129666337 133152209 133154817 NC_060925.1 CM021568.2 97.62 True relocation, inconsistency = 11243675 140910149 140913348 133154954 133158158 NC_060925.1 CM021568.2 97.1 True relocation, inconsistency = -894132 140019590 140022227 133158532 133161167 NC_060925.1 CM021568.2 97.16 True relocation, inconsistency = 2095359 142117587 142121519 133161168 133165032 NC_060925.1 CM021568.2 95.63 True relocation, inconsistency = -9604605 132517001 132524740 133165119 133172858 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = 4102739 136627480 136632485 133172859 133177838 NC_060925.1 CM021568.2 98.27 True relocation, inconsistency = 1098538 137738587 137741851 133185402 133188666 NC_060925.1 CM021568.2 98.74 True relocation, inconsistency = -5201014 132541099 132552111 133188928 133199940 NC_060925.1 CM021568.2 99.65 True local misassembly 132567792 132575130 133215545 133222884 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = 9579759 142164801 142165744 133232796 133233739 NC_060925.1 CM021568.2 98.07 True relocation, inconsistency = -8963461 133202284 133206617 133233740 133238073 NC_060925.1 CM021568.2 98.32 True relocation, inconsistency = -616297 132602541 132625566 133250294 133273319 NC_060925.1 CM021568.2 99.85 True relocation, inconsistency = 9328669 141977738 141979204 133296822 133298288 NC_060925.1 CM021568.2 99.18 True indel: indel (> 5bp) 141979205 141979824 133298315 133298934 NC_060925.1 CM021568.2 98.71 True local misassembly 141980293 141981203 133298935 133299845 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 12487 142019083 142025104 133325238 133331270 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = -9346701 132678457 132683211 133331324 133336075 NC_060925.1 CM021568.2 98.72 True relocation, inconsistency = 8288638 140972157 140976055 133336383 133340285 NC_060925.1 CM021568.2 97.54 True relocation, inconsistency = -10999004 129988977 129991533 133352211 133354767 NC_060925.1 CM021568.2 97.81 True relocation, inconsistency = 2715733 132709102 132734705 133356603 133382206 NC_060925.1 CM021568.2 99.79 True indel: stretch of mismatches 132734880 132740473 133382381 133387975 NC_060925.1 CM021568.2 99.07 True local misassembly 132808583 132819868 133455829 133467115 NC_060925.1 CM021568.2 99.59 True local misassembly 132873186 132888290 133520339 133535438 NC_060925.1 CM021568.2 99.67 True local misassembly 132891606 132898251 133538756 133545430 NC_060925.1 CM021568.2 98.95 True relocation, inconsistency = 5396217 127444119 127445736 133596700 133595083 NC_060925.1 CM021568.2 98.64 True indel: indel (> 5bp) 127443329 127443878 133597483 133596934 NC_060925.1 CM021568.2 98.91 True indel: indel (<= 5bp) 127442655 127443327 133598156 133597484 NC_060925.1 CM021568.2 98.66 True local misassembly 127441206 127442264 133599215 133598157 NC_060925.1 CM021568.2 98.11 True relocation, inconsistency = 5509991 132961495 132986984 133608455 133633873 NC_060925.1 CM021568.2 99.24 True fake: not a misassembly (possible transposable element) 137292516 137293654 133656748 133657886 NC_060925.1 CM021568.2 98.34 True fake: not a misassembly (possible transposable element) 133011148 133057864 133657887 133704453 NC_060925.1 CM021568.2 99.54 True local misassembly 133058731 133070806 133705320 133717395 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = 1536586 134617107 134619873 133727110 133729900 NC_060925.1 CM021568.2 97.74 True relocation, inconsistency = 5945215 140576776 140580676 133741588 133745501 NC_060925.1 CM021568.2 97.01 True relocation, inconsistency = 458160 141038837 141040509 133745502 133747174 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = -7939795 133101575 133113311 133748035 133759783 NC_060925.1 CM021568.2 99.19 True relocation, inconsistency = 408409 133529606 133532150 133767669 133770262 NC_060925.1 CM021568.2 96.76 True relocation, inconsistency = -421038 133116769 133122823 133775919 133781970 NC_060925.1 CM021568.2 99.06 True relocation, inconsistency = -3405716 129718329 129719873 133783192 133784735 NC_060925.1 CM021568.2 97.74 True relocation, inconsistency = 8433287 138153161 138154940 133784736 133786548 NC_060925.1 CM021568.2 95.42 True relocation, inconsistency = 3819786 141975696 141977515 133787518 133789337 NC_060925.1 CM021568.2 98.02 True local misassembly 141977984 141978999 133789338 133790353 NC_060925.1 CM021568.2 98.61 True relocation, inconsistency = -8835330 133143670 133157679 133790354 133804289 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = 4599864 137757544 137760113 133804290 133806885 NC_060925.1 CM021568.2 96.97 True relocation, inconsistency = -4183953 133588450 133590324 133819175 133821049 NC_060925.1 CM021568.2 100.0 True indel: indel (> 5bp) 133590580 133614762 133821312 133845495 NC_060925.1 CM021568.2 99.66 True local misassembly 133615806 133620297 133846533 133851024 NC_060925.1 CM021568.2 99.04 True local misassembly 133620766 133622030 133851025 133852289 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = -416280 133232868 133241218 133879407 133887752 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = 413260 133655488 133661271 133888762 133894518 NC_060925.1 CM021568.2 96.8 True relocation, inconsistency = 8459721 142134921 142137157 133908447 133910684 NC_060925.1 CM021568.2 98.7 True relocation, inconsistency = -8872691 133277300 133311849 133923518 133958097 NC_060925.1 CM021568.2 99.75 True relocation, inconsistency = 7661141 141002326 141004090 133987433 133989197 NC_060925.1 CM021568.2 99.04 True local misassembly 141004559 141005791 133989198 133990430 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 909261 141968341 141972387 134043719 134047742 NC_060925.1 CM021568.2 97.62 True relocation, inconsistency = -8570860 133401528 133417497 134047743 134063710 NC_060925.1 CM021568.2 99.72 True local misassembly 133420676 133443932 134066890 134090146 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = -2136915 131310246 131312250 134093375 134095379 NC_060925.1 CM021568.2 99.11 True relocation, inconsistency = 2136900 133449151 133475597 134095380 134121800 NC_060925.1 CM021568.2 99.47 True fake: not a misassembly (possible transposable element) 142126343 142127728 134121801 134123186 NC_060925.1 CM021568.2 97.97 True fake: not a misassembly (possible transposable element) 133483727 133506488 134129876 134152622 NC_060925.1 CM021568.2 99.3 True relocation, inconsistency = -408388 133098842 133110726 134153364 134165255 NC_060925.1 CM021568.2 97.91 True relocation, inconsistency = 408368 133540030 133544452 134186191 134190623 NC_060925.1 CM021568.2 98.94 True relocation, inconsistency = 8176610 141721374 141723518 134190935 134193088 NC_060925.1 CM021568.2 97.35 True relocation, inconsistency = -9288565 132447786 132449245 134205921 134207357 NC_060925.1 CM021568.2 96.44 True relocation, inconsistency = 1772528 134224251 134229275 134209835 134214861 NC_060925.1 CM021568.2 98.83 True relocation, inconsistency = -4234859 129994417 129997334 134214862 134217805 NC_060925.1 CM021568.2 97.19 True relocation, inconsistency = 9603968 139614763 139616887 134231266 134233389 NC_060925.1 CM021568.2 98.45 True relocation, inconsistency = -6029666 133588450 133627940 134234618 134274083 NC_060925.1 CM021568.2 99.73 True local misassembly 133637034 133655311 134283267 134301544 NC_060925.1 CM021568.2 99.75 True local misassembly 133655893 133663789 134302123 134310019 NC_060925.1 CM021568.2 99.04 True relocation, inconsistency = 7337863 141004559 141005791 134312926 134314158 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = -328868 140678168 140681946 134315403 134319181 NC_060925.1 CM021568.2 97.86 True relocation, inconsistency = -5861263 134828276 134832285 134326774 134330778 NC_060925.1 CM021568.2 98.75 True relocation, inconsistency = -1147699 133691156 133705581 134337348 134351771 NC_060925.1 CM021568.2 99.45 True local misassembly 133820876 133826644 134466801 134472568 NC_060925.1 CM021568.2 99.32 True relocation, inconsistency = 3780107 137607171 137611626 134472988 134477469 NC_060925.1 CM021568.2 98.04 True relocation, inconsistency = -1061968 136549778 136550496 134477589 134478307 NC_060925.1 CM021568.2 96.8 True relocation, inconsistency = -2718207 133832360 133843891 134478378 134489909 NC_060925.1 CM021568.2 99.82 True local misassembly 133853123 133867229 134499124 134513228 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = -668654 133202284 133206559 134516937 134521213 NC_060925.1 CM021568.2 98.32 True relocation, inconsistency = 1169575 134419171 134424758 134564250 134569837 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = -1541448 132883311 132885798 134569838 134572325 NC_060925.1 CM021568.2 98.6 True relocation, inconsistency = 1040650 133954163 133966089 134600040 134611986 NC_060925.1 CM021568.2 98.39 True local misassembly 133971708 133991592 134617604 134637492 NC_060925.1 CM021568.2 99.31 True local misassembly 133992226 133997241 134638122 134643137 NC_060925.1 CM021568.2 98.98 True fake: not a misassembly (possible transposable element) 138476048 138479645 134643342 134646941 NC_060925.1 CM021568.2 98.81 True fake: not a misassembly (possible transposable element) 134033816 134043485 134679512 134689182 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = -998804 133049430 133053999 134693931 134698503 NC_060925.1 CM021568.2 99.43 True relocation, inconsistency = 3490353 136546718 136549016 134700869 134703167 NC_060925.1 CM021568.2 97.61 True relocation, inconsistency = -2491442 134057596 134083011 134703189 134728604 NC_060925.1 CM021568.2 99.88 True relocation, inconsistency = 7934762 142027285 142029456 134738116 134740287 NC_060925.1 CM021568.2 97.69 True relocation, inconsistency = 71863 142101320 142104983 134740288 134743965 NC_060925.1 CM021568.2 97.72 True relocation, inconsistency = -8006175 134103316 134135087 134748473 134780244 NC_060925.1 CM021568.2 99.88 True local misassembly 134142854 134156060 134787983 134801189 NC_060925.1 CM021568.2 99.29 True local misassembly 134159288 134166880 134804468 134812064 NC_060925.1 CM021568.2 98.51 True indel: stretch of mismatches 134166881 134181792 134812065 134826993 NC_060925.1 CM021568.2 98.98 True local misassembly 134198439 134207334 134843655 134852562 NC_060925.1 CM021568.2 98.99 True local misassembly 134211134 134236936 134856363 134882147 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = 434488 134683122 134738853 134893845 134949689 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = -437301 134301553 134308195 134949690 134956337 NC_060925.1 CM021568.2 99.52 True fake: not a misassembly (possible transposable element) 134319693 134322618 134956872 134959796 NC_060925.1 CM021568.2 99.34 True fake: not a misassembly (possible transposable element) 134311659 134320463 134959797 134968601 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = 5233123 139553922 139554709 134968937 134969724 NC_060925.1 CM021568.2 98.1 True relocation, inconsistency = -2791635 136778202 136788077 134984852 134994773 NC_060925.1 CM021568.2 98.99 True relocation, inconsistency = -2441412 134346666 134348672 134994774 134996780 NC_060925.1 CM021568.2 99.26 True indel: stretch of mismatches 134348673 134356506 134996781 135004463 NC_060925.1 CM021568.2 97.0 True local misassembly 134362090 134372505 135009816 135020231 NC_060925.1 CM021568.2 99.61 True local misassembly 134460422 134485778 135108143 135133486 NC_060925.1 CM021568.2 99.63 True indel: stretch of mismatches 134485779 134490458 135133487 135138166 NC_060925.1 CM021568.2 98.62 True local misassembly 134493359 134508264 135141067 135155973 NC_060925.1 CM021568.2 99.54 True local misassembly 134567254 134576198 135214593 135223539 NC_060925.1 CM021568.2 99.65 True fake: not a misassembly (possible transposable element) 130943631 130945519 135223793 135225682 NC_060925.1 CM021568.2 97.3 True fake: not a misassembly (possible transposable element) 134612833 134638584 135260114 135285897 NC_060925.1 CM021568.2 99.07 True relocation, inconsistency = 57528 134697473 134745781 135287258 135335564 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = 58272 134804054 134818740 135335565 135350251 NC_060925.1 CM021568.2 99.81 True relocation, inconsistency = -2577852 132241398 132263203 135350761 135372544 NC_060925.1 CM021568.2 99.69 True relocation, inconsistency = 1017090 133280393 133284127 135372644 135376357 NC_060925.1 CM021568.2 98.42 True relocation, inconsistency = 3010153 136294281 136295045 135376358 135377122 NC_060925.1 CM021568.2 98.71 True local misassembly 136295514 136296864 135377123 135378473 NC_060925.1 CM021568.2 98.19 True relocation, inconsistency = -2744918 133551947 133557608 135378474 135384128 NC_060925.1 CM021568.2 97.47 True relocation, inconsistency = 76729 133634338 133646131 135384129 135395948 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = 1181876 134828008 134840905 135395949 135408840 NC_060925.1 CM021568.2 99.38 True local misassembly 134844984 134849050 135411608 135415674 NC_060925.1 CM021568.2 99.34 True relocation, inconsistency = -22114 134828008 134843326 135416746 135432059 NC_060925.1 CM021568.2 99.49 True local misassembly 134845944 134846682 135432060 135432798 NC_060925.1 CM021568.2 99.53 True relocation, inconsistency = 8397 134855080 134876678 135432799 135454673 NC_060925.1 CM021568.2 98.13 True relocation, inconsistency = -8140 134868539 134875229 135454674 135461365 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = 193181 135068411 135076319 135461366 135469280 NC_060925.1 CM021568.2 98.88 True relocation, inconsistency = -197318 134879002 134906123 135469281 135496529 NC_060925.1 CM021568.2 99.36 True relocation, inconsistency = 14216 134920543 134941126 135496733 135517316 NC_060925.1 CM021568.2 99.91 True local misassembly 134942902 134955133 135517317 135529548 NC_060925.1 CM021568.2 99.75 True fake: not a misassembly (possible transposable element) 135134251 135138367 135529549 135533665 NC_060925.1 CM021568.2 99.68 True fake: not a misassembly (possible transposable element) 134957724 134964315 135533915 135540503 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = 362234 135326550 135335705 135540504 135549685 NC_060925.1 CM021568.2 99.3 True relocation, inconsistency = -187951 135147755 135153518 135549686 135555449 NC_060925.1 CM021568.2 99.77 True relocation, inconsistency = 5489698 140668554 140669276 135580787 135581509 NC_060925.1 CM021568.2 98.2 True relocation, inconsistency = -1551280 139118057 139121401 135581570 135584899 NC_060925.1 CM021568.2 96.36 True relocation, inconsistency = -3921451 135199951 135206289 135584900 135591307 NC_060925.1 CM021568.2 98.14 True relocation, inconsistency = 3033573 138249306 138251183 135600751 135602628 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = -3228093 135055044 135059199 135634582 135638610 NC_060925.1 CM021568.2 96.56 True relocation, inconsistency = -5383280 129676347 129678303 135639038 135640994 NC_060925.1 CM021568.2 98.01 True relocation, inconsistency = 719227 130407855 130410012 135651319 135653487 NC_060925.1 CM021568.2 97.79 True relocation, inconsistency = 8077152 138492309 138493826 135658632 135660149 NC_060925.1 CM021568.2 98.68 True relocation, inconsistency = -3601000 134914699 134916990 135682022 135684313 NC_060925.1 CM021568.2 99.5 True relocation, inconsistency = 187997 135104988 135128039 135684314 135707366 NC_060925.1 CM021568.2 99.88 True fake: not a misassembly (possible transposable element) 135309872 135313469 135707367 135710964 NC_060925.1 CM021568.2 99.31 True fake: not a misassembly (possible transposable element) 135128086 135138367 135710965 135721246 NC_060925.1 CM021568.2 99.68 True relocation, inconsistency = 4232497 139371114 139375542 135721496 135725947 NC_060925.1 CM021568.2 98.88 True relocation, inconsistency = -9203654 130171889 130185304 135725948 135739365 NC_060925.1 CM021568.2 99.5 True relocation, inconsistency = -7104 130178201 130182028 135739366 135743193 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = 6830766 137012795 137015492 135743194 135745891 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = -2026320 134989173 134995084 135745892 135751878 NC_060925.1 CM021568.2 97.66 True relocation, inconsistency = -395829 134599256 134601184 135751879 135753807 NC_060925.1 CM021568.2 98.37 True relocation, inconsistency = 573174 135174359 135180841 135753808 135760388 NC_060925.1 CM021568.2 97.95 True local misassembly 135181361 135197521 135760941 135777101 NC_060925.1 CM021568.2 99.86 True local misassembly 135214277 135219693 135794012 135799451 NC_060925.1 CM021568.2 99.14 True local misassembly 135248780 135260383 135828551 135840136 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = -5590697 129671274 129672579 135841724 135843029 NC_060925.1 CM021568.2 98.55 True relocation, inconsistency = 11321804 141004559 141005259 135853205 135853905 NC_060925.1 CM021568.2 99.29 True indel: indel (> 5bp) 141005283 141005791 135853906 135854414 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = -5730930 135275841 135290460 135855394 135870012 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = 3335323 138626956 138641017 135871185 135885610 NC_060925.1 CM021568.2 97.32 True relocation, inconsistency = -389193 138251825 138259675 135885611 135893461 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = 510003 138769679 138776205 135893462 135899988 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = -187357 138589436 138595409 135900576 135906549 NC_060925.1 CM021568.2 99.64 True relocation, inconsistency = 472397 139067807 139081158 135906550 135919433 NC_060925.1 CM021568.2 96.38 True relocation, inconsistency = -889250 138191909 138197134 135919434 135924659 NC_060925.1 CM021568.2 99.14 True relocation, inconsistency = 882640 139079775 139097621 135924660 135942507 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = -9168 139088454 139110979 135942508 135964977 NC_060925.1 CM021568.2 99.56 True local misassembly 139109204 139110248 135964978 135966022 NC_060925.1 CM021568.2 99.28 True relocation, inconsistency = -1498037 137612212 137619802 135966023 135973614 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = 1846409 139466212 139485373 135973615 135992750 NC_060925.1 CM021568.2 99.57 True relocation, inconsistency = -677040 138808334 138811922 135992751 135996339 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = 660242 139472165 139487203 135996340 136011379 NC_060925.1 CM021568.2 99.75 True relocation, inconsistency = -660563 138826879 138840944 136011618 136025760 NC_060925.1 CM021568.2 98.58 True local misassembly 138844821 138847344 136025761 136028206 NC_060925.1 CM021568.2 97.12 True relocation, inconsistency = 335383 139182728 139200996 136028207 136046477 NC_060925.1 CM021568.2 99.67 True relocation, inconsistency = -370476 138830521 138840944 136046478 136056979 NC_060925.1 CM021568.2 98.68 True local misassembly 138844821 138849331 136056980 136061412 NC_060925.1 CM021568.2 97.28 True relocation, inconsistency = 335375 139189212 139191863 136065918 136068570 NC_060925.1 CM021568.2 99.1 True indel: stretch of mismatches 139191864 139197750 136068571 136074458 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = 23168 139220919 139231900 136074459 136085440 NC_060925.1 CM021568.2 99.35 True local misassembly 139224940 139239525 136085441 136100049 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = -1206099 138033427 138034717 136100050 136101340 NC_060925.1 CM021568.2 98.11 True relocation, inconsistency = 1198995 139240480 139258889 136108108 136126517 NC_060925.1 CM021568.2 99.86 True local misassembly 139263312 139269977 136126521 136133186 NC_060925.1 CM021568.2 99.85 True indel: stretch of mismatches 139269978 139272358 136133187 136135567 NC_060925.1 CM021568.2 99.76 True local misassembly 139277687 139284075 136135568 136141956 NC_060925.1 CM021568.2 99.56 True local misassembly 139282300 139284237 136141957 136143894 NC_060925.1 CM021568.2 99.52 True relocation, inconsistency = 10329 139294972 139305409 136144300 136154737 NC_060925.1 CM021568.2 99.89 True relocation, inconsistency = -4359986 134968532 134974241 136177846 136183555 NC_060925.1 CM021568.2 99.81 True relocation, inconsistency = 2867879 137846634 137856965 136188069 136198377 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = -2504376 135352590 135359651 136198378 136205439 NC_060925.1 CM021568.2 99.74 True local misassembly 135475881 135480755 136321602 136326476 NC_060925.1 CM021568.2 99.2 True fake: not a misassembly (possible transposable element) 136470815 136472387 136326688 136328184 NC_060925.1 CM021568.2 97.89 True fake: not a misassembly (possible transposable element) 135482562 135490936 136328185 136336560 NC_060925.1 CM021568.2 98.96 True relocation, inconsistency = 5380453 140881416 140883760 136346587 136348931 NC_060925.1 CM021568.2 99.28 True indel: indel (> 5bp) 140883761 140884624 136348955 136349818 NC_060925.1 CM021568.2 99.19 True local misassembly 140885093 140886415 136349819 136351141 NC_060925.1 CM021568.2 98.87 True relocation, inconsistency = -11208874 129677811 129679939 136351411 136353539 NC_060925.1 CM021568.2 97.51 True relocation, inconsistency = 4358411 134038519 134043610 136353708 136358799 NC_060925.1 CM021568.2 98.76 True relocation, inconsistency = 1462655 135507786 135516032 136360320 136368540 NC_060925.1 CM021568.2 98.88 True fake: not a misassembly (possible transposable element) 139402634 139403426 136368541 136369333 NC_060925.1 CM021568.2 97.99 True fake: not a misassembly (possible transposable element) 135525866 135528975 136378559 136381642 NC_060925.1 CM021568.2 97.43 True indel: stretch of mismatches 135529071 135551998 136381738 136404401 NC_060925.1 CM021568.2 98.63 True relocation, inconsistency = 5013524 140566632 140569707 136405511 136408575 NC_060925.1 CM021568.2 96.98 True relocation, inconsistency = -964117 139605591 139606281 136408576 136409266 NC_060925.1 CM021568.2 97.48 True local misassembly 139607504 139608554 136410043 136411093 NC_060925.1 CM021568.2 98.0 True relocation, inconsistency = -9477078 130166633 130169712 136446250 136449329 NC_060925.1 CM021568.2 99.11 True relocation, inconsistency = 3806449 133976162 133979091 136449330 136452138 NC_060925.1 CM021568.2 95.0 True relocation, inconsistency = 1620680 135599772 135612516 136452139 136464854 NC_060925.1 CM021568.2 98.79 True fake: not a misassembly (possible transposable element) 139614888 139615651 136464855 136465618 NC_060925.1 CM021568.2 98.05 True fake: not a misassembly (possible transposable element) 135613735 135617585 136466050 136469978 NC_060925.1 CM021568.2 96.33 True indel: indel (> 5bp) 135617563 135644873 136469979 136497304 NC_060925.1 CM021568.2 99.68 True local misassembly 135650186 135663362 136502618 136515795 NC_060925.1 CM021568.2 99.36 True indel: stretch of mismatches 135663363 135665318 136515796 136517751 NC_060925.1 CM021568.2 98.92 True indel: indel (> 5bp) 135665567 135669403 136518046 136521831 NC_060925.1 CM021568.2 96.56 True fake: not a misassembly (possible transposable element) 129661721 129666337 136527585 136532177 NC_060925.1 CM021568.2 96.9 True fake: not a misassembly (possible transposable element) 135680461 135692559 136532773 136544845 NC_060925.1 CM021568.2 99.4 True local misassembly 135703231 135714891 136555647 136567155 NC_060925.1 CM021568.2 98.29 True relocation, inconsistency = -4005648 131717487 131723570 136575399 136581472 NC_060925.1 CM021568.2 98.82 True relocation, inconsistency = 2208683 133932407 133933875 136581626 136583094 NC_060925.1 CM021568.2 98.98 True relocation, inconsistency = 1797117 135741921 135748946 136594023 136601048 NC_060925.1 CM021568.2 99.09 True local misassembly 135759871 135765701 136611865 136617718 NC_060925.1 CM021568.2 98.8 True local misassembly 135766885 135771249 136618906 136623183 NC_060925.1 CM021568.2 95.41 True relocation, inconsistency = -6109978 129671938 129672478 136633850 136634390 NC_060925.1 CM021568.2 97.97 True local misassembly 129672479 129673317 136634986 136635824 NC_060925.1 CM021568.2 99.05 True relocation, inconsistency = 5982047 135655606 135659665 136636066 136640099 NC_060925.1 CM021568.2 97.91 True relocation, inconsistency = 128777 135790790 135793361 136642447 136645018 NC_060925.1 CM021568.2 99.42 True relocation, inconsistency = 6361078 142164801 142167703 136655380 136658273 NC_060925.1 CM021568.2 97.56 True relocation, inconsistency = -4510636 137657279 137657832 136658485 136659038 NC_060925.1 CM021568.2 98.06 True relocation, inconsistency = -1850494 135807339 135822608 136659039 136674305 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = -80700 135753789 135755217 136686186 136687614 NC_060925.1 CM021568.2 97.69 True relocation, inconsistency = -5406153 130349067 130352538 136687617 136691088 NC_060925.1 CM021568.2 97.5 True relocation, inconsistency = 5487210 135839749 135845164 136691089 136696504 NC_060925.1 CM021568.2 98.84 True fake: not a misassembly (possible transposable element) 127486026 127487891 136698370 136696505 NC_060925.1 CM021568.2 96.63 True fake: not a misassembly (possible transposable element) 135847166 135851396 136698528 136702758 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 2065926 137917323 137930002 136702759 136715437 NC_060925.1 CM021568.2 99.58 True local misassembly 137926451 137933547 136715438 136722534 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = -2837183 135096365 135097769 136722535 136723939 NC_060925.1 CM021568.2 99.14 True relocation, inconsistency = 2932126 138031851 138033374 136725895 136727418 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = -2157367 135880427 135919519 136731838 136770904 NC_060925.1 CM021568.2 99.72 True fake: not a misassembly (possible transposable element) 131307296 131308557 136770905 136772166 NC_060925.1 CM021568.2 98.99 True fake: not a misassembly (possible transposable element) 136010691 136030012 136862006 136881327 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = -5630020 130399993 130401426 136881328 136882761 NC_060925.1 CM021568.2 98.91 True relocation, inconsistency = 8576532 139018978 139036925 136923781 136941702 NC_060925.1 CM021568.2 99.72 True local misassembly 139035150 139044392 136941703 136950945 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = -8724664 130353086 130354950 136984303 136986186 NC_060925.1 CM021568.2 96.61 True relocation, inconsistency = 5958170 136329517 136330567 137002583 137003633 NC_060925.1 CM021568.2 99.14 True indel: indel (> 5bp) 136331023 136332714 137004111 137005802 NC_060925.1 CM021568.2 98.7 True local misassembly 136333183 136334388 137005803 137007008 NC_060925.1 CM021568.2 99.34 True relocation, inconsistency = -178730 136178921 136196216 137030271 137047561 NC_060925.1 CM021568.2 99.83 True relocation, inconsistency = -5842261 130405796 130409426 137099402 137103066 NC_060925.1 CM021568.2 97.57 True relocation, inconsistency = 10555375 140990130 140992245 137128395 137130510 NC_060925.1 CM021568.2 98.14 True relocation, inconsistency = -4712850 136279396 136286708 137130511 137137818 NC_060925.1 CM021568.2 99.63 True local misassembly 136300189 136309386 137151199 137160396 NC_060925.1 CM021568.2 99.67 True relocation, inconsistency = 587308 136896791 136904660 137160493 137168407 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 1678307 138582969 138585835 137168409 137171275 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = -2265577 136320319 136331035 137171336 137182056 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = -4441513 131889523 131893853 137182057 137186391 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = -890703 131003151 131014266 137186392 137197507 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = 5332171 136346438 136347084 137197508 137198154 NC_060925.1 CM021568.2 99.64 True local misassembly 136342863 136351909 137198155 137207201 NC_060925.1 CM021568.2 99.37 True relocation, inconsistency = -5957327 130394678 130399707 137207297 137212326 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = 5349512 135759809 135760426 137222916 137223533 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = -2649154 133131343 133133487 137243604 137245723 NC_060925.1 CM021568.2 96.88 True relocation, inconsistency = 3866728 137037539 137039056 137283047 137284564 NC_060925.1 CM021568.2 98.48 True relocation, inconsistency = -571720 136467747 136477183 137284975 137294412 NC_060925.1 CM021568.2 99.41 True local misassembly 136473338 136483023 137294413 137304245 NC_060925.1 CM021568.2 98.34 True relocation, inconsistency = 571202 137054226 137086615 137304246 137336641 NC_060925.1 CM021568.2 99.55 True relocation, inconsistency = 20485 137107101 137127307 137336642 137356802 NC_060925.1 CM021568.2 99.47 True local misassembly 137124224 137136621 137356803 137369200 NC_060925.1 CM021568.2 99.54 True local misassembly 137139801 137141271 137369201 137370671 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = 12430 137153702 137173861 137370672 137390837 NC_060925.1 CM021568.2 99.62 True local misassembly 137168188 137172798 137390838 137395448 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = 142179 137314978 137326381 137395449 137406852 NC_060925.1 CM021568.2 99.74 True local misassembly 137328158 137359353 137406853 137438047 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -146080 137213274 137215750 137438048 137440524 NC_060925.1 CM021568.2 99.8 True relocation, inconsistency = -527135 136688616 136700810 137440525 137452718 NC_060925.1 CM021568.2 99.66 True relocation, inconsistency = 4295366 141004559 141005791 137461101 137462333 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = -4590589 136423291 136428891 137470422 137476022 NC_060925.1 CM021568.2 98.95 True relocation, inconsistency = 29712 136462399 136477745 137479818 137495023 NC_060925.1 CM021568.2 97.94 True indel: stretch of mismatches 136477746 136489912 137495024 137507128 NC_060925.1 CM021568.2 98.85 True local misassembly 136490524 136497374 137507740 137514601 NC_060925.1 CM021568.2 98.92 True fake: not a misassembly (possible transposable element) 131089076 131090255 137514602 137515781 NC_060925.1 CM021568.2 97.98 True fake: not a misassembly (possible transposable element) 136509810 136524336 137526822 137541348 NC_060925.1 CM021568.2 99.48 True indel: stretch of mismatches 136524337 136529516 137541349 137546504 NC_060925.1 CM021568.2 98.19 True local misassembly 136532121 136548790 137548910 137565405 NC_060925.1 CM021568.2 98.13 True local misassembly 136552994 136565934 137569611 137582551 NC_060925.1 CM021568.2 99.33 True relocation, inconsistency = -6894213 129673322 129675384 137584152 137586214 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = 7675214 137358853 137372734 137594469 137608350 NC_060925.1 CM021568.2 99.81 True relocation, inconsistency = -284498 137095868 137099334 137615982 137619451 NC_060925.1 CM021568.2 98.5 True relocation, inconsistency = -496288 136606176 136621481 137622581 137637860 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = 3887040 140508522 140510124 137637861 137639463 NC_060925.1 CM021568.2 98.68 True local misassembly 140510593 140512547 137639464 137641418 NC_060925.1 CM021568.2 98.77 True relocation, inconsistency = -4853954 135658594 135659761 137641419 137642586 NC_060925.1 CM021568.2 97.07 True relocation, inconsistency = 1665191 137325222 137338964 137642856 137656598 NC_060925.1 CM021568.2 98.97 True relocation, inconsistency = -2677079 134662071 134664561 137656784 137659282 NC_060925.1 CM021568.2 95.47 True relocation, inconsistency = 5052213 139716775 139718095 137659283 137660531 NC_060925.1 CM021568.2 95.08 True relocation, inconsistency = -8870718 130847378 130850981 137660532 137664083 NC_060925.1 CM021568.2 96.81 True relocation, inconsistency = 5789212 136640531 136645144 137664421 137669034 NC_060925.1 CM021568.2 98.89 True relocation, inconsistency = 5493180 142139299 142140454 137670009 137671164 NC_060925.1 CM021568.2 98.27 True relocation, inconsistency = -4798864 137342624 137359353 137672198 137688927 NC_060925.1 CM021568.2 99.53 True relocation, inconsistency = -146080 137213274 137215511 137688928 137691165 NC_060925.1 CM021568.2 99.77 True relocation, inconsistency = 131871 137347884 137352621 137691667 137696404 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = -672374 136707657 136718403 137723814 137734537 NC_060925.1 CM021568.2 99.65 True local misassembly 136731705 136749843 137747646 137765758 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = 37326 136788790 136802843 137767379 137781386 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = 628668 137431512 137436787 137781387 137786662 NC_060925.1 CM021568.2 99.56 True relocation, inconsistency = -655432 136781498 136788116 137786805 137793446 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = -24744 136763373 136767063 137793447 137797137 NC_060925.1 CM021568.2 96.19 True relocation, inconsistency = 15933 136782997 136788518 137797138 137802682 NC_060925.1 CM021568.2 99.36 True relocation, inconsistency = -39102 136749417 136763517 137802683 137816783 NC_060925.1 CM021568.2 99.68 True relocation, inconsistency = 666040 137429558 137451209 137816784 137837947 NC_060925.1 CM021568.2 97.1 True relocation, inconsistency = 8878 137460088 137463846 137837948 137841706 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = -646972 136817245 136822908 137842077 137847740 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = 18994 136841903 136869857 137847741 137875619 NC_060925.1 CM021568.2 99.54 True local misassembly 136868082 136870654 137875620 137878192 NC_060925.1 CM021568.2 99.88 True relocation, inconsistency = 973041 137843696 137852004 137878193 137886625 NC_060925.1 CM021568.2 97.79 True relocation, inconsistency = -979480 136872525 136888760 137886626 137902393 NC_060925.1 CM021568.2 96.95 True relocation, inconsistency = 970677 137859438 137864934 137902394 137907890 NC_060925.1 CM021568.2 99.61 True local misassembly 137868487 137879614 137907891 137919021 NC_060925.1 CM021568.2 99.69 True indel: stretch of mismatches 137879615 137880716 137919022 137920123 NC_060925.1 CM021568.2 99.58 True local misassembly 137878941 137889896 137920124 137931079 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = -975478 136925548 136927261 137942209 137943922 NC_060925.1 CM021568.2 99.55 True indel: stretch of mismatches 136927262 136947390 137943923 137964051 NC_060925.1 CM021568.2 99.8 True relocation, inconsistency = -7104 136940287 136944672 137964052 137968437 NC_060925.1 CM021568.2 99.53 True relocation, inconsistency = 986470 137931143 137940323 137968438 137977514 NC_060925.1 CM021568.2 98.07 True relocation, inconsistency = 15472 137955796 137958050 137977515 137979769 NC_060925.1 CM021568.2 99.53 True local misassembly 137958051 137960940 137982466 137985355 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = -1000572 136960369 136970031 137985356 137995018 NC_060925.1 CM021568.2 99.77 True indel: indel (<= 5bp) 136970032 136973109 137995020 137998097 NC_060925.1 CM021568.2 99.84 True indel: indel (> 5bp) 136973110 136973978 137998124 137998992 NC_060925.1 CM021568.2 99.88 True local misassembly 136976817 136977782 137998993 137999958 NC_060925.1 CM021568.2 99.79 True local misassembly 136979008 136991598 137999959 138012549 NC_060925.1 CM021568.2 99.89 True relocation, inconsistency = -4653571 132338028 132344579 138012550 138019115 NC_060925.1 CM021568.2 98.94 True relocation, inconsistency = 4659380 137003960 137017919 138019116 138033075 NC_060925.1 CM021568.2 99.79 True local misassembly 137019696 137041987 138033076 138055367 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = -70222 136978661 136980070 138062263 138063672 NC_060925.1 CM021568.2 98.87 True indel: indel (<= 5bp) 136980071 136983929 138063674 138067532 NC_060925.1 CM021568.2 99.03 True relocation, inconsistency = 70296 137054226 137086615 138067533 138099929 NC_060925.1 CM021568.2 99.53 True relocation, inconsistency = 20485 137107101 137127307 138099930 138120090 NC_060925.1 CM021568.2 99.42 True local misassembly 137124224 137136621 138120091 138132488 NC_060925.1 CM021568.2 99.57 True local misassembly 137139801 137141271 138132489 138133959 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = 12430 137153702 137173861 138133960 138154125 NC_060925.1 CM021568.2 99.62 True local misassembly 137168188 137172798 138154126 138158736 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = 142179 137314978 137325967 138158737 138169726 NC_060925.1 CM021568.2 99.73 True local misassembly 137327744 137346317 138169727 138188172 NC_060925.1 CM021568.2 99.0 True relocation, inconsistency = -631369 136715270 136727844 138188494 138201113 NC_060925.1 CM021568.2 99.5 True local misassembly 136733174 136739774 138201114 138207714 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 658510 137404871 137421509 138214301 138230939 NC_060925.1 CM021568.2 99.92 True relocation, inconsistency = -185278 137236232 137242388 138230940 138236966 NC_060925.1 CM021568.2 98.3 True indel: stretch of mismatches 137242389 137246231 138236967 138240809 NC_060925.1 CM021568.2 97.42 True local misassembly 137264319 137285478 138262924 138284058 NC_060925.1 CM021568.2 99.41 True fake: not a misassembly (possible transposable element) 139510096 139514851 138284059 138288813 NC_060925.1 CM021568.2 98.52 True fake: not a misassembly (possible transposable element) 137290391 137317242 138288814 138315542 NC_060925.1 CM021568.2 99.01 True local misassembly 137317915 137358760 138315998 138356844 NC_060925.1 CM021568.2 99.85 True indel: stretch of mismatches 137358761 137365628 138356845 138363711 NC_060925.1 CM021568.2 99.75 True relocation, inconsistency = -160291 137207443 137211191 138365817 138369565 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = -7126769 130085056 130090538 138370199 138375680 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = 6642143 136737950 136740888 138380949 138383887 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = 644912 137385801 137407316 138383888 138405404 NC_060925.1 CM021568.2 99.65 True local misassembly 137403788 137421509 138405405 138423149 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -185278 137236232 137240233 138423150 138427151 NC_060925.1 CM021568.2 99.6 True indel: stretch of mismatches 137240234 137249818 138427152 138436736 NC_060925.1 CM021568.2 99.64 True relocation, inconsistency = 176981 137426800 137440906 138436737 138450843 NC_060925.1 CM021568.2 98.05 True local misassembly 137439105 137480802 138450844 138492970 NC_060925.1 CM021568.2 98.41 True relocation, inconsistency = -632362 136848441 136850454 138492971 138494984 NC_060925.1 CM021568.2 99.09 True relocation, inconsistency = 988555 137839010 137845263 138494985 138501238 NC_060925.1 CM021568.2 99.78 True local misassembly 137845732 137847633 138501239 138503140 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = -357357 137490382 137506852 138503246 138519840 NC_060925.1 CM021568.2 98.72 True local misassembly 137515534 137536624 138528522 138549612 NC_060925.1 CM021568.2 99.91 True local misassembly 137576588 137594977 138589449 138607838 NC_060925.1 CM021568.2 99.72 True local misassembly 137606453 137611420 138618963 138623982 NC_060925.1 CM021568.2 97.61 True local misassembly 137622689 137669090 138635155 138681559 NC_060925.1 CM021568.2 99.87 True relocation, inconsistency = 364952 138085502 138091216 138733019 138738734 NC_060925.1 CM021568.2 98.69 True local misassembly 138091621 138107732 138738992 138755104 NC_060925.1 CM021568.2 99.26 True relocation, inconsistency = -364906 137742827 137744807 138755105 138757085 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = -2687501 135081239 135082973 138781018 138782752 NC_060925.1 CM021568.2 98.85 True relocation, inconsistency = 3060233 138153094 138156103 138792640 138795686 NC_060925.1 CM021568.2 97.57 True relocation, inconsistency = 259911 138419936 138436306 138799608 138815979 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -632335 137804340 137807936 138816348 138819944 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = 372425 138180362 138190461 138819945 138830045 NC_060925.1 CM021568.2 99.68 True relocation, inconsistency = -372451 137822820 137833226 138834855 138845239 NC_060925.1 CM021568.2 99.31 True local misassembly 137852249 137862989 138864146 138874886 NC_060925.1 CM021568.2 99.73 True relocation, inconsistency = -353314 137511505 137515172 138876716 138880383 NC_060925.1 CM021568.2 99.66 True indel: stretch of mismatches 137515173 137520009 138880384 138885220 NC_060925.1 CM021568.2 99.44 True relocation, inconsistency = 356843 137876853 137890658 138885221 138899509 NC_060925.1 CM021568.2 96.36 True local misassembly 137888883 137896647 138899510 138907251 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = -356889 137539949 137551551 138907442 138919093 NC_060925.1 CM021568.2 99.23 True relocation, inconsistency = 355090 137906642 137922015 138919094 138934443 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = -351539 137570477 137572576 138934444 138936543 NC_060925.1 CM021568.2 99.62 True local misassembly 137569025 137577480 138936544 138944999 NC_060925.1 CM021568.2 99.61 True local misassembly 137575705 137624730 138945000 138994018 NC_060925.1 CM021568.2 99.8 True relocation, inconsistency = 1424063 139048794 139052529 138994019 138997758 NC_060925.1 CM021568.2 98.79 True relocation, inconsistency = -8318994 130733536 130735596 138997759 138999819 NC_060925.1 CM021568.2 98.58 True relocation, inconsistency = 8113731 138849328 138854246 138999820 139004715 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = 327217 139181519 139182799 139004771 139006051 NC_060925.1 CM021568.2 99.69 True indel: indel (<= 5bp) 139182800 139185086 139006053 139008339 NC_060925.1 CM021568.2 99.3 True relocation, inconsistency = -12499 139172588 139173490 139008340 139009242 NC_060925.1 CM021568.2 99.56 True indel: indel (<= 5bp) 139173491 139175777 139009244 139011530 NC_060925.1 CM021568.2 99.39 True relocation, inconsistency = -1552886 137622892 137636773 139011531 139025408 NC_060925.1 CM021568.2 99.55 True relocation, inconsistency = -2163151 135473623 135475071 139025409 139026857 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = 2504347 137979419 137984001 139026858 139031439 NC_060925.1 CM021568.2 99.08 True relocation, inconsistency = -360410 137623592 137650191 139031440 139058038 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -23111 137627081 137638239 139058039 139069192 NC_060925.1 CM021568.2 99.49 True relocation, inconsistency = 378143 138016464 138021353 139069274 139074163 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = 3608232 141666868 141668100 139111446 139112678 NC_060925.1 CM021568.2 99.43 True relocation, inconsistency = -3617563 138071432 138081513 139133573 139143654 NC_060925.1 CM021568.2 99.73 True relocation, inconsistency = -357431 137724083 137729850 139143655 139149422 NC_060925.1 CM021568.2 97.27 True relocation, inconsistency = 371688 138102094 138111021 139149978 139159198 NC_060925.1 CM021568.2 95.54 True relocation, inconsistency = -8330107 129780915 129781889 139159199 139160173 NC_060925.1 CM021568.2 99.28 True relocation, inconsistency = 10487457 140269347 140274499 139160174 139165331 NC_060925.1 CM021568.2 98.74 True relocation, inconsistency = -2195355 138089782 138090637 139175969 139176824 NC_060925.1 CM021568.2 98.25 True indel: indel (<= 5bp) 138090638 138091612 139176826 139177800 NC_060925.1 CM021568.2 98.77 True relocation, inconsistency = -356200 137735413 137745672 139177801 139187890 NC_060925.1 CM021568.2 97.5 True relocation, inconsistency = -7965666 129780783 129781475 139188667 139189359 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 5024920 134806396 134810918 139189360 139193886 NC_060925.1 CM021568.2 99.23 True relocation, inconsistency = 2931178 137742097 137752869 139193887 139204734 NC_060925.1 CM021568.2 98.85 True relocation, inconsistency = 627368 138380238 138386914 139204735 139211411 NC_060925.1 CM021568.2 99.6 True relocation, inconsistency = -255376 138131539 138142608 139211412 139222481 NC_060925.1 CM021568.2 99.21 True local misassembly 138146285 138152832 139222482 139229029 NC_060925.1 CM021568.2 99.32 True relocation, inconsistency = 407597 138560430 138563474 139229030 139232074 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = -769255 137794220 137797820 139232075 139235675 NC_060925.1 CM021568.2 99.97 True local misassembly 137797821 137798757 139236144 139237080 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = -17582 137781176 137786316 139237081 139242176 NC_060925.1 CM021568.2 97.79 True relocation, inconsistency = 788962 138575279 138589291 139242177 139256190 NC_060925.1 CM021568.2 99.73 True relocation, inconsistency = -400388 138188904 138200890 139256191 139267986 NC_060925.1 CM021568.2 98.03 True relocation, inconsistency = -123381 138085408 138101366 139275885 139291814 NC_060925.1 CM021568.2 98.9 True fake: not a misassembly (possible transposable element) 129757856 129761608 139291815 139295567 NC_060925.1 CM021568.2 99.32 True fake: not a misassembly (possible transposable element) 138105142 138116356 139295568 139306784 NC_060925.1 CM021568.2 99.71 True local misassembly 138136928 138142693 139327370 139333136 NC_060925.1 CM021568.2 98.79 True relocation, inconsistency = 3418452 141570334 141571460 139342325 139343451 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = -3521996 138065924 138081513 139359911 139375501 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 7475 138088989 138094756 139375502 139381269 NC_060925.1 CM021568.2 97.27 True local misassembly 138102094 138110578 139381825 139390138 NC_060925.1 CM021568.2 97.43 True relocation, inconsistency = -8330571 129780514 129781889 139390645 139392020 NC_060925.1 CM021568.2 98.93 True relocation, inconsistency = 3425292 133207182 133208652 139392021 139393495 NC_060925.1 CM021568.2 99.29 True relocation, inconsistency = 4898350 138107003 138119521 139393496 139406091 NC_060925.1 CM021568.2 98.92 True local misassembly 138117306 138119139 139406092 139407927 NC_060925.1 CM021568.2 99.28 True relocation, inconsistency = -1023057 137096083 137097898 139407928 139409742 NC_060925.1 CM021568.2 96.34 True relocation, inconsistency = 637514 137735413 137745672 139409743 139419832 NC_060925.1 CM021568.2 97.49 True local misassembly 137742097 137747493 139422126 139427592 NC_060925.1 CM021568.2 97.66 True local misassembly 137746453 137750912 139430251 139434712 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = 627366 138378279 138386914 139434713 139443348 NC_060925.1 CM021568.2 99.37 True local misassembly 138387382 138388872 139443349 139444839 NC_060925.1 CM021568.2 98.39 True relocation, inconsistency = 11197 138400194 138403966 139444964 139448738 NC_060925.1 CM021568.2 98.8 True relocation, inconsistency = -267039 138136928 138140981 139448739 139452717 NC_060925.1 CM021568.2 97.94 True local misassembly 138144631 138152832 139452718 139460893 NC_060925.1 CM021568.2 99.39 True relocation, inconsistency = -362719 137790114 137793671 139460894 139464452 NC_060925.1 CM021568.2 99.17 True relocation, inconsistency = 1732106 139533566 139535366 139472241 139474041 NC_060925.1 CM021568.2 99.22 True relocation, inconsistency = -960088 138575279 138587647 139474042 139486411 NC_060925.1 CM021568.2 99.81 True relocation, inconsistency = -400443 138187205 138202993 139486412 139501954 NC_060925.1 CM021568.2 98.25 True relocation, inconsistency = 377727 138582697 138585710 139503931 139506944 NC_060925.1 CM021568.2 99.4 True relocation, inconsistency = -416527 138169184 138181295 139506945 139519056 NC_060925.1 CM021568.2 99.4 True fake: not a misassembly (possible transposable element) 135189860 135193596 139519057 139522816 NC_060925.1 CM021568.2 98.79 True fake: not a misassembly (possible transposable element) 138185056 138220672 139522817 139558434 NC_060925.1 CM021568.2 99.85 True indel: indel (> 5bp) 138221100 138251183 139558869 139588952 NC_060925.1 CM021568.2 99.89 True local misassembly 138252247 138259696 139588953 139596402 NC_060925.1 CM021568.2 99.74 True local misassembly 138261473 138274844 139596403 139609774 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = 1128244 139403089 139412183 139609775 139618869 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = -18207 139393977 139397498 139618870 139622391 NC_060925.1 CM021568.2 99.75 True relocation, inconsistency = -1088895 138308604 138339181 139622392 139652969 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = 1122295 139461477 139474710 139652970 139666203 NC_060925.1 CM021568.2 99.57 True relocation, inconsistency = 22417 139497128 139498766 139666204 139667842 NC_060925.1 CM021568.2 98.72 True indel: indel (<= 5bp) 139498767 139504933 139667845 139674011 NC_060925.1 CM021568.2 99.56 True fake: not a misassembly (possible transposable element) 134824948 134827883 139674012 139676947 NC_060925.1 CM021568.2 97.94 True fake: not a misassembly (possible transposable element) 139506562 139518023 139676948 139688852 NC_060925.1 CM021568.2 95.74 True relocation, inconsistency = -1137786 138380238 138386967 139688853 139695582 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = 104926 138491894 138494585 139695583 139698274 NC_060925.1 CM021568.2 99.41 True relocation, inconsistency = -121861 138378062 138388872 139703612 139713955 NC_060925.1 CM021568.2 95.17 True relocation, inconsistency = 93857 138482730 138485639 139713956 139716866 NC_060925.1 CM021568.2 99.54 True relocation, inconsistency = -7518 138478122 138501539 139716867 139740285 NC_060925.1 CM021568.2 99.87 True local misassembly 138503873 138512810 139740696 139749633 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = 1013410 139526221 139549383 139749634 139772730 NC_060925.1 CM021568.2 99.44 True relocation, inconsistency = -1026694 138522690 138535516 139772731 139785622 NC_060925.1 CM021568.2 99.31 True local misassembly 138541154 138573046 139785623 139817514 NC_060925.1 CM021568.2 99.87 True relocation, inconsistency = -139041 138434006 138436389 139817515 139819898 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = 118349 138557926 138569448 139823086 139834608 NC_060925.1 CM021568.2 99.51 True local misassembly 138571202 138576931 139834609 139840338 NC_060925.1 CM021568.2 99.65 True local misassembly 138575279 138580224 139840462 139845407 NC_060925.1 CM021568.2 99.39 True relocation, inconsistency = -7193 138573032 138573970 139845408 139846346 NC_060925.1 CM021568.2 99.31 True local misassembly 138575279 138594781 139846347 139865849 NC_060925.1 CM021568.2 99.82 True relocation, inconsistency = -11963 138583172 138590810 139866203 139873841 NC_060925.1 CM021568.2 96.53 True relocation, inconsistency = -405755 138185056 138221713 139873842 139910495 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = 396866 138618580 138620314 139910496 139912230 NC_060925.1 CM021568.2 99.82 True local misassembly 138622944 138627532 139914863 139919448 NC_060925.1 CM021568.2 99.5 True local misassembly 138622944 138637886 139919449 139934391 NC_060925.1 CM021568.2 99.73 True fake: not a misassembly (possible transposable element) 138737116 138740774 139934392 139938050 NC_060925.1 CM021568.2 99.31 True fake: not a misassembly (possible transposable element) 138657993 138675787 139954537 139972332 NC_060925.1 CM021568.2 99.89 True local misassembly 138682561 138722871 139979106 140019408 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 393744 139116737 139124066 140019530 140026859 NC_060925.1 CM021568.2 99.43 True relocation, inconsistency = -393713 138730354 138740774 140026860 140037280 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = 584054 139326867 139333301 140039319 140045753 NC_060925.1 CM021568.2 99.83 True relocation, inconsistency = -599163 138738741 138754452 140050356 140066049 NC_060925.1 CM021568.2 99.48 True indel: stretch of mismatches 138754453 138758711 140066050 140070308 NC_060925.1 CM021568.2 99.67 True local misassembly 138759441 138779396 140071072 140091053 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = 588397 139367794 139372656 140091054 140095916 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = -664055 138713505 138719283 140100820 140106598 NC_060925.1 CM021568.2 99.42 True relocation, inconsistency = 75653 138794937 138804774 140106599 140116459 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = -178352 138627057 138641017 140117094 140131419 NC_060925.1 CM021568.2 97.31 True relocation, inconsistency = -389193 138251825 138259675 140131420 140139270 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = 510003 138769679 138775109 140139271 140144701 NC_060925.1 CM021568.2 99.27 True indel: indel (<= 5bp) 138775110 138776000 140144703 140145593 NC_060925.1 CM021568.2 98.99 True local misassembly 138776001 138777838 140146062 140147899 NC_060925.1 CM021568.2 99.13 True relocation, inconsistency = 636286 139414202 139418579 140147977 140152354 NC_060925.1 CM021568.2 99.18 True relocation, inconsistency = -350773 139067807 139080613 140152355 140164693 NC_060925.1 CM021568.2 96.15 True fake: not a misassembly (possible transposable element) 138691113 138696881 140164694 140170464 NC_060925.1 CM021568.2 99.54 True fake: not a misassembly (possible transposable element) 139079775 139097621 140170465 140188312 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = -9168 139088454 139110979 140188313 140210782 NC_060925.1 CM021568.2 99.54 True local misassembly 139109204 139110248 140210783 140211827 NC_060925.1 CM021568.2 99.32 True relocation, inconsistency = -1498037 137612212 137619802 140211828 140219419 NC_060925.1 CM021568.2 99.37 True relocation, inconsistency = 1846409 139466212 139485373 140219420 140238555 NC_060925.1 CM021568.2 99.59 True relocation, inconsistency = -677040 138808334 138811922 140238556 140242144 NC_060925.1 CM021568.2 99.58 True relocation, inconsistency = 660242 139472165 139487203 140242145 140257184 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = -660563 138826879 138840944 140257423 140271565 NC_060925.1 CM021568.2 98.58 True local misassembly 138844821 138847344 140271566 140274011 NC_060925.1 CM021568.2 97.1 True relocation, inconsistency = 335383 139182728 139200996 140274012 140292286 NC_060925.1 CM021568.2 99.65 True relocation, inconsistency = -59771 139141749 139154440 140292810 140305526 NC_060925.1 CM021568.2 98.2 True relocation, inconsistency = -3683238 135471203 135474706 140305527 140309055 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = 3711835 139189311 139197750 140311825 140320266 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = 23168 139220919 139231900 140320267 140331248 NC_060925.1 CM021568.2 99.45 True local misassembly 139224940 139239525 140331249 140345856 NC_060925.1 CM021568.2 99.56 True relocation, inconsistency = -1558055 137681471 137682761 140345857 140347147 NC_060925.1 CM021568.2 98.93 True relocation, inconsistency = 1550951 139237134 139258889 140350569 140372324 NC_060925.1 CM021568.2 99.85 True relocation, inconsistency = -347733 138916760 138920206 140377928 140381374 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 357480 139277687 139284075 140381375 140387763 NC_060925.1 CM021568.2 99.56 True local misassembly 139282300 139284218 140387764 140389682 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = 10316 139294535 139302929 140389683 140397999 NC_060925.1 CM021568.2 98.84 True relocation, inconsistency = -486741 138819983 138834212 140401794 140416023 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = 308930 139143143 139147395 140416024 140420276 NC_060925.1 CM021568.2 99.88 True local misassembly 139152698 139176300 140420277 140443857 NC_060925.1 CM021568.2 99.67 True relocation, inconsistency = -8857 139167444 139172272 140443858 140448686 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = -310843 138862694 138878413 140449951 140465646 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = 349063 139251074 139258202 140489244 140496587 NC_060925.1 CM021568.2 97.06 True relocation, inconsistency = -264297 138993906 139005608 140496588 140508281 NC_060925.1 CM021568.2 99.72 True relocation, inconsistency = 9720 139015329 139035680 140508282 140528633 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = 44094 139079775 139113834 140528634 140562641 NC_060925.1 CM021568.2 99.69 True relocation, inconsistency = -397960 138715875 138729700 140562642 140576464 NC_060925.1 CM021568.2 99.26 True relocation, inconsistency = 395463 139125164 139139328 140576465 140590624 NC_060925.1 CM021568.2 99.68 True local misassembly 139135631 139172272 140590625 140627268 NC_060925.1 CM021568.2 99.9 True local misassembly 139189212 139209880 140644229 140664430 NC_060925.1 CM021568.2 97.43 True relocation, inconsistency = 8541 139218422 139234839 140664431 140680897 NC_060925.1 CM021568.2 99.49 True fake: not a misassembly (possible transposable element) 138039944 138044306 140681073 140685435 NC_060925.1 CM021568.2 98.82 True fake: not a misassembly (possible transposable element) 139237134 139254877 140685436 140703179 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = -367122 138899686 138900434 140715110 140715858 NC_060925.1 CM021568.2 98.99 True relocation, inconsistency = 345516 139245951 139255288 140715859 140725222 NC_060925.1 CM021568.2 99.42 True relocation, inconsistency = 14182 139270867 139278769 140726619 140734521 NC_060925.1 CM021568.2 99.81 True indel: stretch of mismatches 139278770 139282080 140734522 140737832 NC_060925.1 CM021568.2 99.59 True local misassembly 139280305 139289535 140737833 140747063 NC_060925.1 CM021568.2 99.5 True fake: not a misassembly (possible transposable element) 138946407 138948663 140747064 140749320 NC_060925.1 CM021568.2 99.79 True fake: not a misassembly (possible transposable element) 139298572 139313187 140749321 140763936 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = -718171 138597035 138619497 140765955 140788417 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = 721105 139340970 139343801 140788785 140791616 NC_060925.1 CM021568.2 99.86 True indel: indel (> 5bp) 139343825 139347965 140791617 140795757 NC_060925.1 CM021568.2 99.73 True relocation, inconsistency = -1106651 138241315 138262514 140795758 140816983 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = 1030272 139292816 139312375 140817013 140836572 NC_060925.1 CM021568.2 99.84 True local misassembly 139313259 139320611 140837456 140844813 NC_060925.1 CM021568.2 99.55 True fake: not a misassembly (possible transposable element) 139481237 139485671 140851069 140855504 NC_060925.1 CM021568.2 99.64 True fake: not a misassembly (possible transposable element) 139331303 139349687 140855505 140873889 NC_060925.1 CM021568.2 99.86 True relocation, inconsistency = -1103864 138245824 138248729 140873890 140876769 NC_060925.1 CM021568.2 97.03 True local misassembly 138251836 138260564 140876770 140885472 NC_060925.1 CM021568.2 99.22 True relocation, inconsistency = 1122347 139385987 139400464 140888548 140903122 NC_060925.1 CM021568.2 99.03 True local misassembly 139398689 139403296 140903123 140907730 NC_060925.1 CM021568.2 98.56 True relocation, inconsistency = 32394 139435691 139436558 140907731 140908598 NC_060925.1 CM021568.2 99.18 True local misassembly 139429923 139435027 140908599 140913703 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = -40806 139394222 139403834 140913704 140923413 NC_060925.1 CM021568.2 98.56 True relocation, inconsistency = 30150 139433985 139437852 140923414 140927281 NC_060925.1 CM021568.2 99.67 True local misassembly 139439629 139452707 140927282 140940360 NC_060925.1 CM021568.2 99.85 True relocation, inconsistency = -1111315 138341393 138342745 140940361 140941713 NC_060925.1 CM021568.2 99.5 True local misassembly 138336355 138349452 140941714 140954785 NC_060925.1 CM021568.2 99.44 True relocation, inconsistency = 1114154 139463607 139475054 140954786 140966233 NC_060925.1 CM021568.2 99.82 True local misassembly 139471498 139488632 140966234 140983364 NC_060925.1 CM021568.2 99.85 True indel: stretch of mismatches 139488633 139498763 140983365 140993495 NC_060925.1 CM021568.2 99.93 True local misassembly 139497712 139504933 140993752 141000973 NC_060925.1 CM021568.2 99.68 True relocation, inconsistency = -4667133 134837801 134840683 141000974 141003857 NC_060925.1 CM021568.2 98.65 True relocation, inconsistency = 3554316 138395027 138400034 141003885 141008892 NC_060925.1 CM021568.2 99.92 True local misassembly 138400503 138403879 141008893 141012269 NC_060925.1 CM021568.2 98.67 True relocation, inconsistency = 79577 138483457 138501539 141012270 141029954 NC_060925.1 CM021568.2 97.51 True local misassembly 138506989 138516379 141029955 141039319 NC_060925.1 CM021568.2 99.51 True local misassembly 138522730 138523422 141039843 141040535 NC_060925.1 CM021568.2 98.27 True indel: indel (> 5bp) 138523423 138528584 141040611 141045772 NC_060925.1 CM021568.2 99.85 True indel: indel (<= 5bp) 138528586 138530395 141045773 141047582 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = 1032010 139562406 139578900 141047583 141064054 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = -16305 139565750 139568669 141067209 141070139 NC_060925.1 CM021568.2 98.5 True local misassembly 139567991 139586312 141073048 141091418 NC_060925.1 CM021568.2 99.5 True relocation, inconsistency = -1792964 137793349 137794198 141091419 141092268 NC_060925.1 CM021568.2 99.52 True relocation, inconsistency = 1808039 139602595 139614574 141092626 141104629 NC_060925.1 CM021568.2 98.7 True local misassembly 139612822 139616891 141104630 141108699 NC_060925.1 CM021568.2 99.36 True local misassembly 139617631 139622319 141108968 141113656 NC_060925.1 CM021568.2 98.98 True relocation, inconsistency = 8608 139635667 139636458 141118396 141119187 NC_060925.1 CM021568.2 97.98 True indel: indel (<= 5bp) 139636459 139638793 141119191 141121525 NC_060925.1 CM021568.2 98.12 True indel: indel (<= 5bp) 139638794 139641177 141121527 141123910 NC_060925.1 CM021568.2 98.53 True indel: indel (<= 5bp) 139641178 139643276 141123912 141126010 NC_060925.1 CM021568.2 98.48 True indel: indel (<= 5bp) 139643277 139644378 141126012 141127113 NC_060925.1 CM021568.2 98.92 True local misassembly 139651294 139679887 141127114 141155997 NC_060925.1 CM021568.2 97.13 True relocation, inconsistency = 9791 139689765 139696842 141156084 141163162 NC_060925.1 CM021568.2 99.52 True relocation, inconsistency = 9874 139706717 139708022 141163163 141164468 NC_060925.1 CM021568.2 98.59 True relocation, inconsistency = -18189 139689834 139694951 141164469 141169585 NC_060925.1 CM021568.2 99.24 True local misassembly 139698991 139714709 141169586 141185256 NC_060925.1 CM021568.2 98.54 True fake: not a misassembly (possible transposable element) 142076394 142078273 141188581 141190469 NC_060925.1 CM021568.2 98.41 True fake: not a misassembly (possible transposable element) 139715076 139719693 141190470 141195087 NC_060925.1 CM021568.2 98.79 True indel: stretch of mismatches 139719694 139729683 141195088 141205077 NC_060925.1 CM021568.2 99.88 True relocation, inconsistency = -9004574 130725110 130727934 141205078 141207912 NC_060925.1 CM021568.2 99.35 True relocation, inconsistency = -277052 130453233 130454990 141210263 141212030 NC_060925.1 CM021568.2 98.86 True local misassembly 130453225 130467528 141212031 141226152 NC_060925.1 CM021568.2 97.99 True relocation, inconsistency = 9281647 139749176 139755032 141226153 141232009 NC_060925.1 CM021568.2 99.72 True local misassembly 139759541 139777933 141232010 141250387 NC_060925.1 CM021568.2 98.55 True relocation, inconsistency = -10067883 129710051 129716182 141250388 141256517 NC_060925.1 CM021568.2 97.28 True relocation, inconsistency = 10356084 140072387 140073651 141256638 141257902 NC_060925.1 CM021568.2 98.32 True relocation, inconsistency = -10363853 129709799 129712988 141257903 141261100 NC_060925.1 CM021568.2 97.87 True relocation, inconsistency = 10070690 139783679 139798296 141261101 141275317 NC_060925.1 CM021568.2 95.91 True relocation, inconsistency = -9206296 130592001 130601803 141275318 141285097 NC_060925.1 CM021568.2 96.54 True relocation, inconsistency = 9242824 139844799 139869688 141285269 141310303 NC_060925.1 CM021568.2 99.11 True relocation, inconsistency = -9245185 130624504 130641600 141310304 141327377 NC_060925.1 CM021568.2 99.55 True relocation, inconsistency = 9203011 139844799 139849183 141327565 141331947 NC_060925.1 CM021568.2 99.36 True fake: not a misassembly (possible transposable element) 139867502 139870033 141331948 141334479 NC_060925.1 CM021568.2 99.8 True fake: not a misassembly (possible transposable element) 139853660 139875809 141334727 141356683 NC_060925.1 CM021568.2 98.87 True local misassembly 139874034 139886007 141356684 141368657 NC_060925.1 CM021568.2 99.77 True fake: not a misassembly (possible transposable element) 141408408 141410580 141368658 141370830 NC_060925.1 CM021568.2 99.71 True fake: not a misassembly (possible transposable element) 139893851 139905491 141370831 141382598 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = -27923 139877838 139881461 141382868 141386491 NC_060925.1 CM021568.2 99.78 True local misassembly 139879686 139886404 141386492 141393210 NC_060925.1 CM021568.2 99.69 True relocation, inconsistency = 7446 139893851 139908886 141393211 141408250 NC_060925.1 CM021568.2 99.77 True local misassembly 139910653 139941923 141408251 141439507 NC_060925.1 CM021568.2 99.79 True local misassembly 139940148 139954195 141439508 141453790 NC_060925.1 CM021568.2 98.11 True relocation, inconsistency = 8887 139963083 139966878 141453791 141457586 NC_060925.1 CM021568.2 99.45 True relocation, inconsistency = 1628995 141600280 141603227 141461993 141464915 NC_060925.1 CM021568.2 96.98 True relocation, inconsistency = -1637692 139972663 139985709 141472043 141485088 NC_060925.1 CM021568.2 99.86 True local misassembly 139988549 139996639 141485089 141493156 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = 893377 140892812 140907212 141495952 141510362 NC_060925.1 CM021568.2 98.97 True relocation, inconsistency = -888834 140018379 140021940 141510363 141513921 NC_060925.1 CM021568.2 98.37 True relocation, inconsistency = 1592976 141614917 141619711 141513922 141518728 NC_060925.1 CM021568.2 98.07 True relocation, inconsistency = -1845940 139773772 139781971 141518729 141527182 NC_060925.1 CM021568.2 96.49 True relocation, inconsistency = 254466 140036438 140059355 141527183 141550102 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = 29987 140089343 140095071 141550103 141555844 NC_060925.1 CM021568.2 98.18 True relocation, inconsistency = 22561 140118884 140120338 141557096 141558547 NC_060925.1 CM021568.2 98.21 True relocation, inconsistency = -82613 140038849 140061455 141559671 141582280 NC_060925.1 CM021568.2 99.3 True relocation, inconsistency = -285397 139776059 139779375 141582281 141585600 NC_060925.1 CM021568.2 96.68 True relocation, inconsistency = 283911 140063287 140079575 141585601 141601452 NC_060925.1 CM021568.2 96.03 True fake: not a misassembly (possible transposable element) 140946817 140948206 141601453 141602845 NC_060925.1 CM021568.2 98.13 True fake: not a misassembly (possible transposable element) 140082079 140108566 141607989 141634460 NC_060925.1 CM021568.2 99.01 True relocation, inconsistency = 456937 140565615 140566631 141634572 141635591 NC_060925.1 CM021568.2 97.72 True relocation, inconsistency = 397037 140963669 140965018 141635592 141636944 NC_060925.1 CM021568.2 98.04 True relocation, inconsistency = -852646 140112373 140129370 141636945 141654046 NC_060925.1 CM021568.2 98.3 True relocation, inconsistency = 889509 141018922 141032208 141654089 141667376 NC_060925.1 CM021568.2 99.61 True relocation, inconsistency = -875630 140156579 140160324 141667377 141671126 NC_060925.1 CM021568.2 98.55 True local misassembly 140153598 140159250 141671127 141676781 NC_060925.1 CM021568.2 98.63 True indel: stretch of mismatches 140159251 140174505 141676782 141692049 NC_060925.1 CM021568.2 98.72 True relocation, inconsistency = 888516 141064401 141071177 141693429 141700207 NC_060925.1 CM021568.2 98.86 True relocation, inconsistency = -872452 140208030 140233428 141709512 141734913 NC_060925.1 CM021568.2 99.2 True relocation, inconsistency = 857778 141091207 141092928 141734914 141736602 NC_060925.1 CM021568.2 97.13 True relocation, inconsistency = -69438 141024320 141024963 141737432 141738075 NC_060925.1 CM021568.2 98.76 True relocation, inconsistency = -760196 140264768 140285941 141738076 141759716 NC_060925.1 CM021568.2 97.59 True relocation, inconsistency = -30426 140255516 140261383 141759717 141765584 NC_060925.1 CM021568.2 99.37 True local misassembly 140261852 140263209 141765585 141766942 NC_060925.1 CM021568.2 99.19 True relocation, inconsistency = 1564786 141828727 141840455 141767674 141779377 NC_060925.1 CM021568.2 98.65 True fake: not a misassembly (possible transposable element) 141772257 141773574 141779378 141780695 NC_060925.1 CM021568.2 98.87 True fake: not a misassembly (possible transposable element) 141839352 141843392 141780723 141784760 NC_060925.1 CM021568.2 99.33 True local misassembly 141851368 141857079 141786422 141792132 NC_060925.1 CM021568.2 99.19 True relocation, inconsistency = -673848 141187903 141190147 141796804 141799048 NC_060925.1 CM021568.2 99.02 True local misassembly 141190148 141190773 141799196 141799821 NC_060925.1 CM021568.2 98.56 True local misassembly 141190774 141192407 141800290 141801923 NC_060925.1 CM021568.2 98.78 True relocation, inconsistency = -63767 141141693 141156196 141814976 141829479 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = -798690 140357507 140366205 141829480 141838204 NC_060925.1 CM021568.2 99.57 True local misassembly 140361639 140373887 141838205 141850947 NC_060925.1 CM021568.2 95.76 True relocation, inconsistency = -18030 140361693 140379138 141856783 141874254 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 807749 141186888 141188714 141874255 141876081 NC_060925.1 CM021568.2 99.45 True relocation, inconsistency = -782979 140405736 140417289 141876082 141887609 NC_060925.1 CM021568.2 99.13 True relocation, inconsistency = -27007 140408728 140423468 141906055 141920353 NC_060925.1 CM021568.2 96.38 True relocation, inconsistency = 1442193 141890274 141901026 141944966 141955718 NC_060925.1 CM021568.2 99.47 True relocation, inconsistency = -1436005 140465022 140478529 141955719 141969253 NC_060925.1 CM021568.2 99.08 True relocation, inconsistency = -8219429 132259101 132261941 141969254 141972019 NC_060925.1 CM021568.2 96.57 True relocation, inconsistency = -1857282 130407028 130410150 141974388 141977518 NC_060925.1 CM021568.2 96.52 True relocation, inconsistency = 10067693 140480861 140488385 141980536 141988034 NC_060925.1 CM021568.2 98.46 True relocation, inconsistency = 9063 140503686 140510794 141994272 142001380 NC_060925.1 CM021568.2 97.82 True relocation, inconsistency = 12505 140523300 140540410 142001381 142018937 NC_060925.1 CM021568.2 96.91 True relocation, inconsistency = 1452065 141992476 141994212 142018938 142020674 NC_060925.1 CM021568.2 99.14 True fake: not a misassembly (possible transposable element) 140534531 140538242 142020675 142024363 NC_060925.1 CM021568.2 98.06 True fake: not a misassembly (possible transposable element) 141997296 142001755 142024695 142029131 NC_060925.1 CM021568.2 97.87 True relocation, inconsistency = -680511 141327717 141330288 142035604 142038175 NC_060925.1 CM021568.2 99.02 True relocation, inconsistency = -780457 140549832 140559342 142038176 142047688 NC_060925.1 CM021568.2 99.27 True relocation, inconsistency = 1477038 142036381 142055870 142047689 142066689 NC_060925.1 CM021568.2 96.36 True relocation, inconsistency = -2417018 139638853 139645412 142066690 142073254 NC_060925.1 CM021568.2 98.17 True relocation, inconsistency = -4690984 134955402 134957492 142074228 142076318 NC_060925.1 CM021568.2 98.36 True relocation, inconsistency = 5621965 140579458 140590107 142076319 142086972 NC_060925.1 CM021568.2 98.88 True indel: stretch of mismatches 140590108 140592981 142086973 142089846 NC_060925.1 CM021568.2 98.9 True relocation, inconsistency = 61195 140654177 140662763 142089847 142098411 NC_060925.1 CM021568.2 98.67 True local misassembly 140679303 140682544 142114850 142118091 NC_060925.1 CM021568.2 98.55 True indel: indel (<= 5bp) 140682700 140688227 142118246 142123754 NC_060925.1 CM021568.2 98.41 True fake: not a misassembly (possible transposable element) 142148998 142150251 142123755 142125008 NC_060925.1 CM021568.2 98.72 True fake: not a misassembly (possible transposable element) 140689635 140706282 142125162 142141809 NC_060925.1 CM021568.2 99.55 True local misassembly 140707325 140725266 142142853 142160720 NC_060925.1 CM021568.2 99.36 True fake: not a misassembly (possible transposable element) 137114393 137119529 142175709 142180847 NC_060925.1 CM021568.2 98.15 True fake: not a misassembly (possible transposable element) 140751042 140768388 142186154 142203522 NC_060925.1 CM021568.2 99.65 True local misassembly 140764050 140766895 142205058 142207926 NC_060925.1 CM021568.2 99.16 True relocation, inconsistency = -1785700 138981196 138988308 142207927 142215039 NC_060925.1 CM021568.2 99.76 True relocation, inconsistency = 1791632 140786062 140802533 142221161 142237639 NC_060925.1 CM021568.2 99.73 True local misassembly 140803283 140819723 142238394 142254830 NC_060925.1 CM021568.2 99.59 True fake: not a misassembly (possible transposable element) 139946510 139947418 142254831 142255739 NC_060925.1 CM021568.2 97.41 True fake: not a misassembly (possible transposable element) 140820630 140824489 142255740 142259599 NC_060925.1 CM021568.2 99.77 True fake: not a misassembly (possible transposable element) 130377582 130381696 142263028 142267142 NC_060925.1 CM021568.2 98.73 True fake: not a misassembly (possible transposable element) 140832010 140844883 142267143 142280016 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = -875276 139986539 139994517 142296948 142304926 NC_060925.1 CM021568.2 99.7 True fake: not a misassembly (possible transposable element) 141552484 141555636 142306746 142309898 NC_060925.1 CM021568.2 99.27 True fake: not a misassembly (possible transposable element) 140001734 140018291 142309899 142326456 NC_060925.1 CM021568.2 99.57 True relocation, inconsistency = 49178 140067470 140068620 142326457 142327607 NC_060925.1 CM021568.2 97.24 True relocation, inconsistency = 877775 140946396 140959912 142327608 142341122 NC_060925.1 CM021568.2 97.85 True relocation, inconsistency = -923475 140036438 140063140 142341123 142367814 NC_060925.1 CM021568.2 99.23 True relocation, inconsistency = -9493942 130569199 130570807 142367815 142369446 NC_060925.1 CM021568.2 97.19 True relocation, inconsistency = 9492479 140063287 140075748 142369447 142381890 NC_060925.1 CM021568.2 98.18 True relocation, inconsistency = 847122 140922871 140923494 142381891 142382514 NC_060925.1 CM021568.2 98.79 True local misassembly 140923717 140924794 142382573 142383650 NC_060925.1 CM021568.2 99.26 True indel: indel (> 5bp) 140924805 140925560 142383651 142384406 NC_060925.1 CM021568.2 99.21 True relocation, inconsistency = -850631 140079792 140111103 142389269 142420619 NC_060925.1 CM021568.2 99.07 True relocation, inconsistency = 857026 140968130 140976854 142420620 142429420 NC_060925.1 CM021568.2 97.67 True relocation, inconsistency = -10961101 130015754 130017314 142429421 142430981 NC_060925.1 CM021568.2 98.33 True relocation, inconsistency = 10105351 140123596 140129364 142431912 142437683 NC_060925.1 CM021568.2 99.06 True relocation, inconsistency = 889509 141018922 141030406 142437732 142449217 NC_060925.1 CM021568.2 99.63 True relocation, inconsistency = 665097 141696982 141720672 142450696 142474353 NC_060925.1 CM021568.2 98.34 True relocation, inconsistency = -12058852 129663474 129666337 142476007 142478871 NC_060925.1 CM021568.2 97.94 True relocation, inconsistency = 10529277 140196679 140204969 142479936 142488228 NC_060925.1 CM021568.2 98.97 True local misassembly 140208521 140238306 142488229 142518016 NC_060925.1 CM021568.2 99.07 True relocation, inconsistency = 852451 141090758 141092928 142518017 142520154 NC_060925.1 CM021568.2 97.14 True relocation, inconsistency = -69438 141024320 141024963 142520984 142521627 NC_060925.1 CM021568.2 98.76 True relocation, inconsistency = -760196 140264768 140285941 142521628 142543268 NC_060925.1 CM021568.2 97.59 True relocation, inconsistency = -30426 140255516 140257836 142543269 142545589 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 17523 140275360 140280943 142545590 142550966 NC_060925.1 CM021568.2 97.28 True local misassembly 140284027 140297296 142550967 142564235 NC_060925.1 CM021568.2 99.7 True relocation, inconsistency = 805589 141102973 141117155 142564323 142578505 NC_060925.1 CM021568.2 99.69 True local misassembly 141123517 141131134 142580405 142588022 NC_060925.1 CM021568.2 99.04 True local misassembly 141143459 141155797 142600346 142612684 NC_060925.1 CM021568.2 99.54 True relocation, inconsistency = -798690 140357108 140372286 142612685 142627843 NC_060925.1 CM021568.2 98.99 True relocation, inconsistency = -10715692 129709220 129716459 142680469 142687651 NC_060925.1 CM021568.2 96.75 True relocation, inconsistency = 11864508 141636959 141638263 142743643 142744947 NC_060925.1 CM021568.2 98.39 True local misassembly 141639060 141641038 142745302 142747280 NC_060925.1 CM021568.2 99.04 True relocation, inconsistency = -1149707 140530995 140535603 142786944 142791552 NC_060925.1 CM021568.2 98.29 True relocation, inconsistency = 809689 141348509 141353931 142794769 142800100 NC_060925.1 CM021568.2 97.29 True local misassembly 141357492 141363161 142803309 142808835 NC_060925.1 CM021568.2 97.04 True relocation, inconsistency = -9438077 131928003 131936662 142811754 142820390 NC_060925.1 CM021568.2 98.66 True relocation, inconsistency = 9438250 141374913 141379606 142820391 142825084 NC_060925.1 CM021568.2 99.62 True relocation, inconsistency = -1627856 139764402 139767327 142837736 142840637 NC_060925.1 CM021568.2 97.2 True relocation, inconsistency = 105578 139874671 139886007 142842403 142853736 NC_060925.1 CM021568.2 99.71 True fake: not a misassembly (possible transposable element) 141408408 141410580 142853737 142855909 NC_060925.1 CM021568.2 99.71 True fake: not a misassembly (possible transposable element) 139893851 139905491 142855910 142867726 NC_060925.1 CM021568.2 97.89 True relocation, inconsistency = -27923 139877838 139882770 142867996 142872928 NC_060925.1 CM021568.2 99.81 True local misassembly 139880995 139886404 142872929 142878338 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = 7446 139893851 139908886 142878339 142893378 NC_060925.1 CM021568.2 99.77 True local misassembly 139910653 139941923 142893379 142924635 NC_060925.1 CM021568.2 99.78 True local misassembly 139940148 139954195 142924636 142938918 NC_060925.1 CM021568.2 98.14 True local misassembly 139957749 139966878 142938919 142948043 NC_060925.1 CM021568.2 99.78 True relocation, inconsistency = 1533878 141604107 141608650 143051394 143055976 NC_060925.1 CM021568.2 97.86 True relocation, inconsistency = -4662991 136950029 136950760 143060346 143061077 NC_060925.1 CM021568.2 99.32 True relocation, inconsistency = 3963271 140914707 140919250 143061753 143066322 NC_060925.1 CM021568.2 97.51 True relocation, inconsistency = -10941485 129980486 129987316 143069043 143075875 NC_060925.1 CM021568.2 98.26 True relocation, inconsistency = 11625088 141615268 141625237 143078739 143088688 NC_060925.1 CM021568.2 98.11 True relocation, inconsistency = -11917417 129708756 129709564 143089624 143090432 NC_060925.1 CM021568.2 97.4 True relocation, inconsistency = 12376040 142085877 142086883 143090705 143091711 NC_060925.1 CM021568.2 98.31 True relocation, inconsistency = -1121369 140965846 140969180 143092043 143095376 NC_060925.1 CM021568.2 98.56 True relocation, inconsistency = 662704 141633441 141639216 143096933 143102693 NC_060925.1 CM021568.2 97.09 True fake: not a misassembly (possible transposable element) 139612123 139615132 143104047 143107128 NC_060925.1 CM021568.2 96.24 True fake: not a misassembly (possible transposable element) 141652439 141658668 143115850 143122079 NC_060925.1 CM021568.2 99.39 True local misassembly 141669278 141676078 143132690 143139459 NC_060925.1 CM021568.2 98.79 True indel: stretch of mismatches 141676079 141681085 143139460 143144466 NC_060925.1 CM021568.2 98.69 True relocation, inconsistency = -667315 141021377 141028805 143152073 143159348 NC_060925.1 CM021568.2 96.86 True relocation, inconsistency = -868928 140160793 140165316 143160264 143164797 NC_060925.1 CM021568.2 97.6 True relocation, inconsistency = -10462319 129707706 129709798 143169506 143171601 NC_060925.1 CM021568.2 97.75 True relocation, inconsistency = 10451112 140160911 140170531 143171602 143181237 NC_060925.1 CM021568.2 98.18 True relocation, inconsistency = 885432 141055964 141058673 143181238 143183947 NC_060925.1 CM021568.2 98.29 True relocation, inconsistency = -867597 140191956 140203215 143184827 143196088 NC_060925.1 CM021568.2 98.72 True local misassembly 140208521 140238306 143197843 143227630 NC_060925.1 CM021568.2 99.06 True relocation, inconsistency = 852451 141090758 141092928 143227631 143229768 NC_060925.1 CM021568.2 97.14 True relocation, inconsistency = -69438 141024320 141024963 143230598 143231241 NC_060925.1 CM021568.2 98.72 True relocation, inconsistency = -760196 140264768 140285941 143231242 143252882 NC_060925.1 CM021568.2 97.58 True relocation, inconsistency = -30426 140255516 140257836 143252883 143255203 NC_060925.1 CM021568.2 99.51 True relocation, inconsistency = 17523 140275360 140280943 143255204 143260580 NC_060925.1 CM021568.2 97.28 True local misassembly 140284027 140297296 143260581 143273849 NC_060925.1 CM021568.2 99.71 True relocation, inconsistency = 872437 141169821 141174295 143273937 143278411 NC_060925.1 CM021568.2 99.6 True relocation, inconsistency = 669062 141843980 141852994 143279034 143288048 NC_060925.1 CM021568.2 99.23 True relocation, inconsistency = -1587330 140267635 140270655 143290019 143293039 NC_060925.1 CM021568.2 99.01 True local misassembly 140270656 140272285 143293508 143295137 NC_060925.1 CM021568.2 99.26 True relocation, inconsistency = -5455221 134835437 134837367 143313510 143315414 NC_060925.1 CM021568.2 97.15 True relocation, inconsistency = 6986900 141835515 141845886 143326662 143337030 NC_060925.1 CM021568.2 99.56 True translocation 42785230 42785943 143337657 143338370 NC_060934.1 CM021568.2 98.04 True relocation, inconsistency = 80117 42870471 42871364 143342781 143343674 NC_060934.1 CM021568.2 98.04 True translocation 139660014 139661819 143343675 143345480 NC_060925.1 CM021568.2 97.62 True local misassembly 139661820 139662362 143345949 143346491 NC_060925.1 CM021568.2 98.16 True indel: indel (> 5bp) 139662363 139663295 143346515 143347447 NC_060925.1 CM021568.2 97.53 True relocation, inconsistency = -8882244 130813280 130815168 143379676 143381564 NC_060925.1 CM021568.2 98.62 True relocation, inconsistency = 9282745 140098672 140100791 143382323 143384445 NC_060925.1 CM021568.2 98.49 True relocation, inconsistency = -10412942 129710066 129716459 143406662 143413021 NC_060925.1 CM021568.2 97.1 True relocation, inconsistency = 12205635 141969886 141970976 143460813 143461903 NC_060925.1 CM021568.2 98.43 True local misassembly 141974529 141981731 143461904 143469106 NC_060925.1 CM021568.2 99.15 True relocation, inconsistency = -1479610 140502122 140510794 143469107 143477782 NC_060925.1 CM021568.2 98.3 True relocation, inconsistency = 12505 140523300 140543021 143477783 143497973 NC_060925.1 CM021568.2 97.31 True relocation, inconsistency = 758516 141301538 141304705 143497974 143501119 NC_060925.1 CM021568.2 98.72 True relocation, inconsistency = 692590 141997296 142001755 143501120 143505556 NC_060925.1 CM021568.2 98.05 True relocation, inconsistency = 8970 142017198 142019082 143512029 143513913 NC_060925.1 CM021568.2 98.5 True relocation, inconsistency = -687705 141331378 141340709 143513914 143523246 NC_060925.1 CM021568.2 99.31 True relocation, inconsistency = 694808 142035518 142055870 143523247 143543118 NC_060925.1 CM021568.2 96.16 True fake: not a misassembly (possible transposable element) 139638853 139643988 143543119 143548259 NC_060925.1 CM021568.2 98.13 True fake: not a misassembly (possible transposable element) 142054748 142060270 143548260 143553783 NC_060925.1 CM021568.2 98.24 True relocation, inconsistency = -1479781 140580490 140594933 143553784 143568228 NC_060925.1 CM021568.2 99.3 True relocation, inconsistency = 1537493 142132427 142140000 143568229 143575779 NC_060925.1 CM021568.2 99.04 True local misassembly 142150407 142168528 143582301 143600424 NC_060925.1 CM021568.2 99.41 True fake: not a misassembly (possible transposable element) 142147099 142152342 143600503 143605755 NC_060925.1 CM021568.2 98.29 True fake: not a misassembly (possible transposable element) 142169447 142171324 143606771 143608648 NC_060925.1 CM021568.2 99.76 True local misassembly 142168091 142198384 143608649 143638627 NC_060925.1 CM021568.2 98.45 True local misassembly 142197268 142198002 143639374 143640108 NC_060925.1 CM021568.2 95.78 True local misassembly 142198781 142205052 143640656 143646927 NC_060925.1 CM021568.2 99.87 True local misassembly 142198781 142223083 143646928 143671180 NC_060925.1 CM021568.2 99.66 True relocation, inconsistency = -32645 142190462 142192209 143671204 143672951 NC_060925.1 CM021568.2 95.59 True relocation, inconsistency = -15369 142180360 142180969 143676471 143677080 NC_060925.1 CM021568.2 95.57 True indel: indel (> 5bp) 142180970 142181515 143677088 143677633 NC_060925.1 CM021568.2 95.42 True local misassembly 142182028 142182689 143678143 143678804 NC_060925.1 CM021568.2 97.89 True relocation, inconsistency = 38043 142221207 143148530 143679279 144606270 NC_060925.1 CM021568.2 99.85 True local misassembly 143149708 144472526 144608235 145934902 NC_060925.1 CM021568.2 99.57 True local misassembly 144472464 144483368 145936413 145947317 NC_060925.1 CM021568.2 99.65 True relocation, inconsistency = -66661 144416708 144469274 145947318 145999948 NC_060925.1 CM021568.2 99.52 True relocation, inconsistency = 9549 144478824 145191408 145999949 146712538 NC_060925.1 CM021568.2 99.84 True relocation, inconsistency = 10986 145202395 145244739 146712539 146755898 NC_060925.1 CM021568.2 97.63 True relocation, inconsistency = 795618 146042117 146215998 146928858 146755899 NC_060925.1 CM021568.2 99.14 True relocation, inconsistency = 451722 145412624 145590394 146928859 147106634 NC_060925.1 CM021568.2 99.69 True indel: indel (<= 5bp) 145590440 145650080 147106679 147166350 NC_060925.1 CM021568.2 99.74 True relocation, inconsistency = 25043959 120459686 120546480 147252653 147166351 NC_060925.1 CM021568.2 99.25 True relocation, inconsistency = 25189794 145736275 146211031 147252654 147727709 NC_060925.1 CM021568.2 99.54 True relocation, inconsistency = 9474 146220506 147577833 147727710 149084817 NC_060925.1 CM021568.2 99.84 True indel: indel (<= 5bp) 147578276 147818985 149085263 149325972 NC_060925.1 CM021568.2 99.75 True relocation, inconsistency = -2633799 145185187 145191266 149325973 149332036 NC_060925.1 CM021568.2 96.67 True local misassembly 145184997 145191266 149332037 149338339 NC_060925.1 CM021568.2 96.81 True local misassembly 145184997 145197526 149338340 149350949 NC_060925.1 CM021568.2 96.98 True relocation, inconsistency = 2619730 147817257 149666249 149350950 151200125 NC_060925.1 CM021568.2 99.83 True local misassembly 149665345 151349673 151200126 152884737 NC_060925.1 CM021568.2 99.72 True local misassembly 151351031 152235316 152886095 153770159 NC_060925.1 CM021568.2 99.8 True relocation, inconsistency = -22977 152212342 160193281 153770162 161750369 NC_060925.1 CM021568.2 99.75 True local misassembly 160193434 160587313 161750435 162144375 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = 44354 160631668 160828816 162144376 162341509 NC_060925.1 CM021568.2 99.46 True relocation, inconsistency = 81327 160910144 163552602 162341510 164983156 NC_060925.1 CM021568.2 99.79 True local misassembly 163552814 168611946 164983271 170040896 NC_060925.1 CM021568.2 99.77 True relocation, inconsistency = 22111 168634058 173275730 170040897 174681314 NC_060925.1 CM021568.2 99.79 True indel: indel (> 5bp) 173275839 173908859 174681347 175314665 NC_060925.1 CM021568.2 99.69 True indel: stretch of mismatches 173908987 174185385 175314793 175591199 NC_060925.1 CM021568.2 99.81 True local misassembly 174185382 174413441 175596485 175824619 NC_060925.1 CM021568.2 99.75 True indel: indel (<= 5bp) 174413529 174585177 175824703 175996331 NC_060925.1 CM021568.2 99.71 True local misassembly 174585825 175335541 175996788 176746516 NC_060925.1 CM021568.2 99.7 True indel: indel (> 5bp) 175335616 178050257 176746576 179461070 NC_060925.1 CM021568.2 99.82 True local misassembly 178051106 180429442 179461888 181840325 NC_060925.1 CM021568.2 99.88 True local misassembly 180429687 182973560 181841046 184382013 NC_060925.1 CM021568.2 99.69 True local misassembly 182973805 185681748 184382014 187088708 NC_060925.1 CM021568.2 99.65 True indel: indel (> 5bp) 185681860 186211416 187088853 187618364 NC_060925.1 CM021568.2 99.95 True indel: indel (> 5bp) 186211499 186850210 187618392 188257118 NC_060925.1 CM021568.2 99.77 True local misassembly 186850460 189373267 188259020 190788238 NC_060925.1 CM021568.2 99.58 True indel: stretch of mismatches 189373471 196114934 190788442 197530898 NC_060925.1 CM021568.2 99.76 True translocation 55369963 55371316 197544558 197543203 NC_060934.1 CM021568.2 95.65 True translocation 7164160 7166362 197548442 197546237 NC_060929.1 CM021568.2 95.97 True translocation 196173522 196195582 197549580 197571253 NC_060925.1 CM021568.2 95.31 True local misassembly 196196239 196197395 197574913 197576069 NC_060925.1 CM021568.2 98.88 True indel: indel (<= 5bp) 196197396 196198694 197576071 197577369 NC_060925.1 CM021568.2 99.23 True indel: indel (<= 5bp) 196198696 196199984 197577370 197578658 NC_060925.1 CM021568.2 99.15 True indel: indel (<= 5bp) 196199985 196200711 197578660 197579386 NC_060925.1 CM021568.2 98.35 True local misassembly 196203349 196203861 197579880 197580392 NC_060925.1 CM021568.2 96.88 True indel: indel (<= 5bp) 196204302 196204995 197580832 197581525 NC_060925.1 CM021568.2 97.69 True indel: indel (> 5bp) 196205002 196207592 197581526 197584116 NC_060925.1 CM021568.2 99.0 True indel: indel (> 5bp) 196207603 196208315 197584117 197584829 NC_060925.1 CM021568.2 98.04 True local misassembly 196208951 196209581 197585469 197586099 NC_060925.1 CM021568.2 96.35 True relocation, inconsistency = -124059 196089207 196094469 197589784 197595107 NC_060925.1 CM021568.2 95.6 True indel: indel (<= 5bp) 196094560 197047049 197595202 198548029 NC_060925.1 CM021568.2 99.77 True fake: not a misassembly (possible transposable element) 197047052 197048245 198549224 198548031 NC_060925.1 CM021568.2 99.58 True fake: not a misassembly (possible transposable element) 197048246 203103231 198549225 204602211 NC_060925.1 CM021568.2 99.81 True local misassembly 203103965 204473862 204602212 205972099 NC_060925.1 CM021568.2 99.85 True indel: indel (> 5bp) 204473944 206633926 205972261 208132218 NC_060925.1 CM021568.2 99.82 True local misassembly 206637528 214073246 208132219 215572940 NC_060925.1 CM021568.2 99.5 True local misassembly 214074006 214449615 215574355 215949985 NC_060925.1 CM021568.2 99.84 True indel: indel (> 5bp) 214449703 216019640 215950056 217519736 NC_060925.1 CM021568.2 99.83 True local misassembly 216020662 219198541 217520711 220698498 NC_060925.1 CM021568.2 99.75 True indel: indel (> 5bp) 219198729 219199993 220698698 220699999 NC_060925.1 CM021568.2 96.85 True indel: indel (> 5bp) 219200229 222717220 220700229 224223406 NC_060925.1 CM021568.2 99.67 True local misassembly 222717867 225384454 224224399 226892095 NC_060925.1 CM021568.2 99.82 True indel: stretch of mismatches 225384518 225810643 226892159 227318185 NC_060925.1 CM021568.2 99.9 True local misassembly 225810882 230099938 227319347 231606580 NC_060925.1 CM021568.2 99.82 True indel: indel (<= 5bp) 230100026 231182984 231606670 232688075 NC_060925.1 CM021568.2 99.56 True local misassembly 231183265 232111139 232689114 233618051 NC_060925.1 CM021568.2 99.55 True indel: indel (> 5bp) 232111137 233212899 233618104 234719736 NC_060925.1 CM021568.2 99.81 True local misassembly 233214298 234416683 234719790 235921344 NC_060925.1 CM021568.2 99.63 True local misassembly 234416820 234983644 235922057 236489257 NC_060925.1 CM021568.2 99.79 True local misassembly 234983971 235588369 236489421 237093506 NC_060925.1 CM021568.2 99.55 True indel: indel (> 5bp) 235588487 235721019 237093651 237226362 NC_060925.1 CM021568.2 99.49 True indel: indel (<= 5bp) 235721047 236118531 237226386 237628623 NC_060925.1 CM021568.2 98.31 True relocation, inconsistency = 8389 236126921 236434019 237628624 237936356 NC_060925.1 CM021568.2 99.45 True indel: stretch of mismatches 236434020 242387064 237936357 243892570 NC_060925.1 CM021568.2 99.66 True indel: indel (> 5bp) 242387174 244209290 243892674 245714487 NC_060925.1 CM021568.2 99.91 True local misassembly 244209826 246115550 245717948 247625281 NC_060925.1 CM021568.2 99.4 True local misassembly 246119121 246249636 247627498 247755030 NC_060925.1 CM021568.2 97.39 True indel: indel (<= 5bp) 246249668 246796250 247755063 248297598 NC_060925.1 CM021568.2 98.77 True local misassembly 246796408 247107400 248300587 248611245 NC_060925.1 CM021568.2 99.57 True indel: indel (> 5bp) 247107382 247706690 248611246 249210361 NC_060925.1 CM021568.2 99.83 True indel: indel (> 5bp) 247706926 247707710 249210618 249211402 NC_060925.1 CM021568.2 99.75 True indel: indel (<= 5bp) 247707711 247711027 249211404 249214720 NC_060925.1 CM021568.2 99.73 True indel: indel (<= 5bp) 247711028 247712102 249214722 249215796 NC_060925.1 CM021568.2 99.63 True indel: indel (<= 5bp) 247712104 247712870 249215797 249216563 NC_060925.1 CM021568.2 99.87 True indel: indel (<= 5bp) 247712871 247718838 249216566 249222533 NC_060925.1 CM021568.2 99.75 True indel: indel (<= 5bp) 247718842 247719981 249222534 249223673 NC_060925.1 CM021568.2 99.74 True indel: indel (<= 5bp) 247719982 247721657 249223675 249225350 NC_060925.1 CM021568.2 99.46 True indel: indel (<= 5bp) 247721658 247730026 249225352 249233720 NC_060925.1 CM021568.2 99.49 True indel: indel (<= 5bp) 247730219 247732058 249233918 249235757 NC_060925.1 CM021568.2 99.29 True local misassembly 247733438 247737635 249236694 249240891 NC_060925.1 CM021568.2 99.29 True indel: indel (> 5bp) 247737659 247738169 249240892 249241402 NC_060925.1 CM021568.2 99.02 True indel: indel (<= 5bp) 247738221 247739139 249241458 249242376 NC_060925.1 CM021568.2 99.02 True indel: indel (<= 5bp) 247739143 247740080 249242377 249243314 NC_060925.1 CM021568.2 99.04 True indel: indel (<= 5bp) 247740380 247742105 249243616 249245341 NC_060925.1 CM021568.2 99.48 True indel: indel (<= 5bp) 247742106 247745127 249245346 249248367 NC_060925.1 CM021568.2 99.34 True indel: indel (<= 5bp) 247745129 247745854 249248368 249249093 NC_060925.1 CM021568.2 99.45 True indel: indel (<= 5bp) 247745856 247747011 249249094 249250249 NC_060925.1 CM021568.2 99.31 True indel: indel (<= 5bp) 247747030 247748900 249250266 249252136 NC_060925.1 CM021568.2 99.79 True indel: indel (<= 5bp) 247748901 247751366 249252138 249254603 NC_060925.1 CM021568.2 99.59 True indel: indel (<= 5bp) 247751367 247754174 249254608 249257415 NC_060925.1 CM021568.2 99.72 True indel: indel (<= 5bp) 247754176 247756281 249257416 249259521 NC_060925.1 CM021568.2 99.81 True indel: indel (> 5bp) 247756282 247762480 249259532 249265730 NC_060925.1 CM021568.2 99.76 True indel: indel (<= 5bp) 247762481 247774974 249265732 249278225 NC_060925.1 CM021568.2 99.62 True indel: indel (<= 5bp) 247774978 247779902 249278226 249283150 NC_060925.1 CM021568.2 99.84 True local misassembly 247780552 247781484 249283809 249284741 NC_060925.1 CM021568.2 99.79 True indel: indel (> 5bp) 247781736 247783315 249284976 249286555 NC_060925.1 CM021568.2 99.75 True indel: indel (> 5bp) 247783322 247784899 249286556 249288133 NC_060925.1 CM021568.2 99.81 True indel: indel (<= 5bp) 247784900 247785815 249288135 249289050 NC_060925.1 CM021568.2 99.67 True indel: indel (<= 5bp) 247785816 247788035 249289055 249291274 NC_060925.1 CM021568.2 99.86 True local misassembly 247788481 247793568 249291804 249296891 NC_060925.1 CM021568.2 99.45 True local misassembly 247794177 247796478 249297511 249299812 NC_060925.1 CM021568.2 99.52 True indel: stretch of mismatches 247796505 247803083 249299839 249306417 NC_060925.1 CM021568.2 99.76 True indel: indel (<= 5bp) 247803084 247808300 249306419 249311635 NC_060925.1 CM021568.2 99.75 True indel: indel (<= 5bp) 247808302 247808976 249311636 249312310 NC_060925.1 CM021568.2 100.0 True indel: indel (<= 5bp) 247808980 247809501 249312311 249312832 NC_060925.1 CM021568.2 99.43 True local misassembly 247809664 247814126 249314831 249319293 NC_060925.1 CM021568.2 99.44 True indel: stretch of mismatches 247814282 247820435 249319449 249325602 NC_060925.1 CM021568.2 99.55 True indel: indel (> 5bp) 247820443 247823003 249325603 249328163 NC_060925.1 CM021568.2 99.49 True indel: indel (<= 5bp) 247823005 247823735 249328164 249328894 NC_060925.1 CM021568.2 99.32 True indel: indel (<= 5bp) 247823736 247824796 249328896 249329956 NC_060925.1 CM021568.2 99.62 True indel: indel (<= 5bp) 247824799 247829027 249329957 249334185 NC_060925.1 CM021568.2 99.69 True relocation, inconsistency = -7962 247830189 247833512 249343309 249346632 NC_060925.1 CM021568.2 99.79 True relocation, inconsistency = 18905 247852662 248086212 249346877 249580495 NC_060925.1 CM021568.2 99.41 True indel: indel (<= 5bp) 248086376 248092168 249580660 249586452 NC_060925.1 CM021568.2 97.21 True relocation, inconsistency = 203518 247853438 247882857 249615857 249586453 NC_060925.1 CM021568.2 99.55 True relocation, inconsistency = 188783 248071662 248083847 249615879 249628052 NC_060925.1 CM021568.2 98.82 True indel: stretch of mismatches 248083919 248113476 249628124 249657670 NC_060925.1 CM021568.2 99.36 True local misassembly 248114383 248115097 249657671 249658367 NC_060925.1 CM021568.2 97.07 True local misassembly 248115151 248383452 249658530 249928541 NC_060925.1 CM021568.2 98.92 True local misassembly 248383536 248387328 249928726 249932541 NC_060925.1 CM021568.2 99.27 True CONTIG CM021568.2 249932541 misassembled 1 201343 1 201163 NC_060926.1 CM021569.2 99.53 True local misassembly 207525 424369 209155 427026 NC_060926.1 CM021569.2 98.42 True local misassembly 424966 440690 427524 442810 NC_060926.1 CM021569.2 95.17 True local misassembly 440785 1014232 442811 1016587 NC_060926.1 CM021569.2 98.97 True local misassembly 1014566 1056170 1016588 1058172 NC_060926.1 CM021569.2 99.23 True local misassembly 1056712 1220822 1058713 1223496 NC_060926.1 CM021569.2 97.43 True local misassembly 1223472 1528641 1224496 1526749 NC_060926.1 CM021569.2 98.17 True local misassembly 1530773 1531907 1529076 1530210 NC_060926.1 CM021569.2 99.82 True indel: indel (> 5bp) 1531963 1533349 1530211 1531597 NC_060926.1 CM021569.2 99.57 True indel: indel (<= 5bp) 1533350 1533961 1531599 1532210 NC_060926.1 CM021569.2 100.0 True indel: indel (<= 5bp) 1533963 1534677 1532211 1532925 NC_060926.1 CM021569.2 99.86 True local misassembly 1540807 1574192 1536953 1569725 NC_060926.1 CM021569.2 97.34 True local misassembly 1574327 3712778 1569747 3707893 NC_060926.1 CM021569.2 99.35 True indel: indel (> 5bp) 3713017 4188437 3708056 4188314 NC_060926.1 CM021569.2 98.59 True relocation, inconsistency = 10644 4199250 5042112 4188483 5031342 NC_060926.1 CM021569.2 99.77 True local misassembly 5042157 7210723 5031570 7203171 NC_060926.1 CM021569.2 99.47 True indel: indel (> 5bp) 7210914 7901976 7203380 7894365 NC_060926.1 CM021569.2 99.77 True indel: indel (> 5bp) 7902038 9424410 7894495 9416978 NC_060926.1 CM021569.2 99.86 True local misassembly 9424885 9762644 9417294 9756262 NC_060926.1 CM021569.2 99.36 True local misassembly 9764328 9813251 9756604 9804954 NC_060926.1 CM021569.2 98.34 True local misassembly 9816825 10026379 9804955 10014171 NC_060926.1 CM021569.2 99.56 True indel: indel (> 5bp) 10026663 11030359 10014513 11017386 NC_060926.1 CM021569.2 99.32 True indel: stretch of mismatches 11030360 11144834 11017387 11132172 NC_060926.1 CM021569.2 99.5 True local misassembly 11146108 11911659 11132353 11897114 NC_060926.1 CM021569.2 99.53 True fake: not a misassembly (possible transposable element) 11877816 11878759 11900079 11901016 NC_060926.1 CM021569.2 95.67 True fake: not a misassembly (possible transposable element) 11911658 15129052 11901017 15116308 NC_060926.1 CM021569.2 99.75 True local misassembly 15129401 18327463 15116491 18314965 NC_060926.1 CM021569.2 99.87 True local misassembly 18327711 18854342 18315335 18841317 NC_060926.1 CM021569.2 99.54 True local misassembly 18854860 24452010 18841340 24444466 NC_060926.1 CM021569.2 99.74 True local misassembly 24452351 25669879 24445456 25666006 NC_060926.1 CM021569.2 99.55 True indel: indel (<= 5bp) 25670063 29874464 25666188 29868162 NC_060926.1 CM021569.2 99.82 True local misassembly 29875285 31946236 29868530 31939259 NC_060926.1 CM021569.2 99.81 True indel: indel (<= 5bp) 31946614 34518670 31939635 34509072 NC_060926.1 CM021569.2 99.66 True relocation, inconsistency = -40690 34518679 34747552 34549771 34778702 NC_060926.1 CM021569.2 99.83 True local misassembly 34747548 35756056 34780233 35788753 NC_060926.1 CM021569.2 99.77 True relocation, inconsistency = 21158 35777215 35960885 35788754 35972357 NC_060926.1 CM021569.2 99.86 True local misassembly 35962679 40209234 35973563 40218861 NC_060926.1 CM021569.2 99.81 True indel: indel (> 5bp) 40209370 51545402 40219017 51547310 NC_060926.1 CM021569.2 99.62 True local misassembly 51545583 52791619 51547699 52792520 NC_060926.1 CM021569.2 99.71 True indel: indel (> 5bp) 52791667 55398619 52792556 55399945 NC_060926.1 CM021569.2 99.8 True indel: indel (> 5bp) 55398720 55481378 55400029 55482657 NC_060926.1 CM021569.2 99.63 True local misassembly 55481468 60473069 55482981 60474003 NC_060926.1 CM021569.2 99.87 True local misassembly 60473513 60513148 60474306 60514127 NC_060926.1 CM021569.2 99.44 True indel: indel (> 5bp) 60513218 63582945 60514188 63582145 NC_060926.1 CM021569.2 99.78 True indel: indel (> 5bp) 63583020 68463633 63582267 68465187 NC_060926.1 CM021569.2 99.7 True local misassembly 68464211 73812928 68465798 73814118 NC_060926.1 CM021569.2 99.84 True local misassembly 73817828 76801475 73814119 76798213 NC_060926.1 CM021569.2 99.78 True indel: indel (> 5bp) 76801546 77412766 76798259 77409601 NC_060926.1 CM021569.2 99.74 True indel: indel (> 5bp) 77412851 78578971 77409678 78575403 NC_060926.1 CM021569.2 99.67 True indel: indel (> 5bp) 78579049 80932538 78575465 80933063 NC_060926.1 CM021569.2 99.62 True indel: indel (> 5bp) 80932564 82187304 80933153 82193604 NC_060926.1 CM021569.2 99.31 True indel: indel (> 5bp) 82187563 83343318 82193831 83349335 NC_060926.1 CM021569.2 99.87 True local misassembly 83343412 84198362 83349636 84204744 NC_060926.1 CM021569.2 99.91 True local misassembly 84199062 86915984 84205302 86921863 NC_060926.1 CM021569.2 99.86 True indel: indel (> 5bp) 86916033 88192377 86921869 88194521 NC_060926.1 CM021569.2 99.36 True local misassembly 88193236 88841774 88195487 88843339 NC_060926.1 CM021569.2 99.81 True relocation, inconsistency = 26840 88868618 89375321 88843343 89350103 NC_060926.1 CM021569.2 99.79 True relocation, inconsistency = 766795 90142117 90371989 89580062 89350104 NC_060926.1 CM021569.2 99.34 True relocation, inconsistency = 401862 89599835 89739668 89580649 89720512 NC_060926.1 CM021569.2 99.83 True local misassembly 89741850 89743934 89722495 89724579 NC_060926.1 CM021569.2 99.18 True indel: indel (> 5bp) 89743935 89745220 89724601 89725886 NC_060926.1 CM021569.2 99.38 True fake: not a misassembly (possible transposable element) 89990299 89991349 89729090 89728040 NC_060926.1 CM021569.2 98.86 True fake: not a misassembly (possible transposable element) 89748787 89918087 89730765 89900244 NC_060926.1 CM021569.2 99.79 True indel: indel (> 5bp) 89918209 90343879 89900314 90326104 NC_060926.1 CM021569.2 99.79 True relocation, inconsistency = 520667 89378093 89397541 90345548 90326105 NC_060926.1 CM021569.2 99.65 True relocation, inconsistency = 971687 90371990 90715310 90348310 90691740 NC_060926.1 CM021569.2 99.7 True indel: indel (<= 5bp) 90715419 90843515 90691850 90820040 NC_060926.1 CM021569.2 99.41 True local misassembly 90845368 90849389 90821844 90825852 NC_060926.1 CM021569.2 99.08 True indel: indel (> 5bp) 90849776 90877153 90826245 90853629 NC_060926.1 CM021569.2 99.78 True indel: indel (> 5bp) 90877539 90906624 90854047 90883132 NC_060926.1 CM021569.2 99.93 True local misassembly 90909274 90995916 90885723 90972399 NC_060926.1 CM021569.2 99.34 True indel: indel (<= 5bp) 90996008 91016243 90972490 90992677 NC_060926.1 CM021569.2 99.48 True local misassembly 91016309 91028695 90992893 91005206 NC_060926.1 CM021569.2 98.89 True indel: indel (> 5bp) 91028889 91086733 91005415 91063046 NC_060926.1 CM021569.2 99.08 True local misassembly 91087309 91092986 91063639 91069316 NC_060926.1 CM021569.2 99.93 True indel: indel (<= 5bp) 91093244 91101210 91069571 91077361 NC_060926.1 CM021569.2 95.49 True indel: indel (> 5bp) 91101393 91102916 91077538 91079061 NC_060926.1 CM021569.2 97.57 True local misassembly 91103393 91105769 91079216 91081603 NC_060926.1 CM021569.2 97.74 True indel: stretch of mismatches 91106000 91111481 91081834 91087317 NC_060926.1 CM021569.2 96.03 True indel: indel (> 5bp) 91111611 91112141 91087459 91087989 NC_060926.1 CM021569.2 97.55 True local misassembly 91112450 91116903 91088187 91092604 NC_060926.1 CM021569.2 96.48 True indel: stretch of mismatches 91117134 91118721 91092835 91094423 NC_060926.1 CM021569.2 97.55 True local misassembly 91119198 91152485 91094578 91127550 NC_060926.1 CM021569.2 97.4 True local misassembly 91152650 91162932 91127617 91137916 NC_060926.1 CM021569.2 98.23 True local misassembly 91163583 91175451 91138449 91150142 NC_060926.1 CM021569.2 97.51 True indel: indel (> 5bp) 91175656 91184924 91150324 91159515 NC_060926.1 CM021569.2 98.1 True indel: stretch of mismatches 91185011 91276461 91159602 91250414 NC_060926.1 CM021569.2 97.36 True indel: indel (<= 5bp) 91276572 91284406 91250529 91258357 NC_060926.1 CM021569.2 95.28 True local misassembly 91284850 91291235 91258707 91265000 NC_060926.1 CM021569.2 97.76 True local misassembly 91291797 91309626 91265579 91283467 NC_060926.1 CM021569.2 98.62 True indel: indel (> 5bp) 91309783 91319113 91283614 91292944 NC_060926.1 CM021569.2 99.76 True indel: indel (> 5bp) 91319271 91321393 91293081 91295203 NC_060926.1 CM021569.2 98.78 True local misassembly 91321659 91322926 91295204 91296471 NC_060926.1 CM021569.2 98.74 True indel: indel (> 5bp) 91322927 91324052 91296498 91297623 NC_060926.1 CM021569.2 97.6 True indel: indel (<= 5bp) 91324440 91335369 91298010 91308688 NC_060926.1 CM021569.2 96.87 True local misassembly 91335863 91338454 91309292 91311917 NC_060926.1 CM021569.2 96.02 True indel: indel (> 5bp) 91338891 91340262 91312366 91313737 NC_060926.1 CM021569.2 97.74 True indel: indel (> 5bp) 91340315 91341435 91313738 91314858 NC_060926.1 CM021569.2 98.66 True indel: indel (> 5bp) 91341763 91342615 91315160 91316012 NC_060926.1 CM021569.2 97.77 True indel: indel (<= 5bp) 91342955 91343488 91316350 91316883 NC_060926.1 CM021569.2 97.38 True indel: indel (> 5bp) 91343489 91344118 91316933 91317562 NC_060926.1 CM021569.2 98.73 True local misassembly 91346024 91348564 91319402 91321928 NC_060926.1 CM021569.2 97.64 True local misassembly 91349247 91350445 91322664 91323862 NC_060926.1 CM021569.2 97.91 True local misassembly 91351133 91351913 91324550 91325330 NC_060926.1 CM021569.2 98.85 True indel: indel (> 5bp) 91352114 91353140 91325522 91326548 NC_060926.1 CM021569.2 98.44 True indel: indel (> 5bp) 91353151 91353724 91326549 91327122 NC_060926.1 CM021569.2 97.04 True local misassembly 91354294 91359885 91327681 91333225 NC_060926.1 CM021569.2 96.95 True local misassembly 91359835 91462799 91333273 91436175 NC_060926.1 CM021569.2 98.46 True indel: indel (<= 5bp) 91462961 91469327 91436340 91442706 NC_060926.1 CM021569.2 99.89 True indel: indel (> 5bp) 91469576 91496591 91442978 91469985 NC_060926.1 CM021569.2 97.42 True local misassembly 91497540 91558088 91470926 91531404 NC_060926.1 CM021569.2 97.85 True indel: indel (> 5bp) 91558326 91567324 91531664 91540713 NC_060926.1 CM021569.2 95.01 True local misassembly 91567988 91568731 91541354 91542120 NC_060926.1 CM021569.2 95.31 True indel: indel (<= 5bp) 91568819 91577800 91542205 91551202 NC_060926.1 CM021569.2 98.27 True indel: indel (> 5bp) 91578188 91596706 91551639 91570255 NC_060926.1 CM021569.2 99.25 True indel: indel (<= 5bp) 91597055 91665696 91570607 91639363 NC_060926.1 CM021569.2 98.58 True relocation, inconsistency = 660786 90893214 90934995 91680889 91640637 NC_060926.1 CM021569.2 95.8 True relocation, inconsistency = 26132 90862764 90863645 91685207 91684326 NC_060926.1 CM021569.2 99.77 True indel: indel (<= 5bp) 90862246 90862759 91685721 91685208 NC_060926.1 CM021569.2 99.22 True local misassembly 90855830 90856711 91690771 91689890 NC_060926.1 CM021569.2 99.66 True indel: indel (<= 5bp) 90855312 90855825 91691285 91690772 NC_060926.1 CM021569.2 98.83 True relocation, inconsistency = -32844 90885009 90886726 91694461 91692715 NC_060926.1 CM021569.2 96.92 True relocation, inconsistency = 811775 91708864 92029515 91704824 92026435 NC_060926.1 CM021569.2 99.46 True relocation, inconsistency = -53229 91976287 92202629 92252788 92026436 NC_060926.1 CM021569.2 99.74 True relocation, inconsistency = 53272 92255902 92304756 92252789 92302854 NC_060926.1 CM021569.2 98.65 True local misassembly 92310726 92338379 92308832 92336483 NC_060926.1 CM021569.2 99.31 True fake: not a misassembly (possible transposable element) 92555554 92556141 92336708 92337295 NC_060926.1 CM021569.2 96.09 True fake: not a misassembly (possible transposable element) 92337647 92339673 92337448 92339476 NC_060926.1 CM021569.2 97.59 True local misassembly 92337439 92339040 92339618 92341220 NC_060926.1 CM021569.2 97.69 True local misassembly 92337439 92338608 92341316 92342490 NC_060926.1 CM021569.2 96.94 True local misassembly 92345746 92353765 92343844 92351865 NC_060926.1 CM021569.2 98.59 True relocation, inconsistency = 311230 92666490 92668207 92353360 92355078 NC_060926.1 CM021569.2 98.49 True relocation, inconsistency = 1114015 93782223 93784220 92355079 92357078 NC_060926.1 CM021569.2 98.14 True relocation, inconsistency = -1425238 92358983 92372632 92357079 92370730 NC_060926.1 CM021569.2 99.4 True fake: not a misassembly (possible transposable element) 94046857 94053129 92375575 92381854 NC_060926.1 CM021569.2 97.36 True fake: not a misassembly (possible transposable element) 92385332 92391234 92383428 92389331 NC_060926.1 CM021569.2 98.51 True relocation, inconsistency = 2247729 94638964 94639907 92389332 92390276 NC_060926.1 CM021569.2 96.7 True relocation, inconsistency = -28032 94612502 94613047 92390903 92391448 NC_060926.1 CM021569.2 97.99 True relocation, inconsistency = -2209663 92403691 92404676 92391755 92392740 NC_060926.1 CM021569.2 98.68 True local misassembly 92404765 92405979 92392741 92393955 NC_060926.1 CM021569.2 97.55 True relocation, inconsistency = -10025 92395955 92403685 92393956 92401686 NC_060926.1 CM021569.2 99.15 True indel: indel (<= 5bp) 92403686 92407640 92401688 92405642 NC_060926.1 CM021569.2 98.84 True indel: stretch of mismatches 92407775 92419320 92405777 92417321 NC_060926.1 CM021569.2 99.24 True relocation, inconsistency = 1975992 94395362 94397229 92417371 92419237 NC_060926.1 CM021569.2 97.43 True relocation, inconsistency = -1858457 92539945 92540592 92420410 92421057 NC_060926.1 CM021569.2 97.99 True indel: indel (<= 5bp) 92540594 92541272 92421058 92421736 NC_060926.1 CM021569.2 98.09 True indel: indel (<= 5bp) 92541274 92542694 92421737 92423157 NC_060926.1 CM021569.2 98.66 True local misassembly 92542695 92543992 92423496 92424793 NC_060926.1 CM021569.2 98.54 True indel: indel (<= 5bp) 92543994 92544549 92424794 92425349 NC_060926.1 CM021569.2 98.38 True relocation, inconsistency = -104977 92441747 92445349 92427524 92431126 NC_060926.1 CM021569.2 99.5 True relocation, inconsistency = 27171 92475422 92476049 92434028 92434656 NC_060926.1 CM021569.2 98.82 True relocation, inconsistency = -34303 92441747 92445349 92434657 92438259 NC_060926.1 CM021569.2 99.28 True local misassembly 92445658 92452976 92443664 92450984 NC_060926.1 CM021569.2 99.47 True fake: not a misassembly (possible transposable element) 92476050 92478453 92452656 92455059 NC_060926.1 CM021569.2 98.5 True fake: not a misassembly (possible transposable element) 92477855 92498857 92475865 92496867 NC_060926.1 CM021569.2 99.24 True indel: indel (<= 5bp) 92498995 92505491 92497001 92503497 NC_060926.1 CM021569.2 99.29 True local misassembly 92506986 92521525 92504992 92519533 NC_060926.1 CM021569.2 98.93 True fake: not a misassembly (possible transposable element) 92465866 92470640 92526057 92530831 NC_060926.1 CM021569.2 98.93 True fake: not a misassembly (possible transposable element) 92528754 92530969 92530832 92533047 NC_060926.1 CM021569.2 98.93 True local misassembly 92535176 92539614 92533182 92537620 NC_060926.1 CM021569.2 98.78 True fake: not a misassembly (possible transposable element) 92615899 92617439 92537621 92539161 NC_060926.1 CM021569.2 98.72 True fake: not a misassembly (possible transposable element) 92539975 92544423 92539347 92543794 NC_060926.1 CM021569.2 98.79 True local misassembly 92560606 92588339 92558619 92586353 NC_060926.1 CM021569.2 99.58 True relocation, inconsistency = -53852 92534488 92539614 92586354 92591480 NC_060926.1 CM021569.2 98.87 True relocation, inconsistency = -28892 92537546 92538558 92618304 92619316 NC_060926.1 CM021569.2 97.83 True indel: indel (<= 5bp) 92538560 92539379 92619317 92620136 NC_060926.1 CM021569.2 98.29 True relocation, inconsistency = 82738 92622126 92633918 92620145 92631941 NC_060926.1 CM021569.2 99.36 True local misassembly 92637925 92647476 92635949 92645507 NC_060926.1 CM021569.2 99.05 True local misassembly 92648604 92655163 92646635 92653197 NC_060926.1 CM021569.2 99.38 True indel: stretch of mismatches 92655283 92662280 92653317 92660318 NC_060926.1 CM021569.2 99.33 True indel: indel (<= 5bp) 92662649 92670237 92660683 92668273 NC_060926.1 CM021569.2 99.59 True local misassembly 92678591 92683254 92676627 92681290 NC_060926.1 CM021569.2 99.5 True indel: stretch of mismatches 92683255 92695981 92681291 92694018 NC_060926.1 CM021569.2 99.47 True relocation, inconsistency = -83930 92613651 92616079 92695618 92698046 NC_060926.1 CM021569.2 99.42 True relocation, inconsistency = 223232 92844025 92845383 92702760 92704118 NC_060926.1 CM021569.2 99.34 True relocation, inconsistency = -139299 92710354 92716149 92708388 92714184 NC_060926.1 CM021569.2 98.9 True indel: indel (<= 5bp) 92716290 92720797 92714329 92718837 NC_060926.1 CM021569.2 98.51 True relocation, inconsistency = 1886036 94611813 94615064 92723817 92727072 NC_060926.1 CM021569.2 98.43 True relocation, inconsistency = 14448 94635967 94637370 92733527 92734936 NC_060926.1 CM021569.2 96.13 True relocation, inconsistency = -1900485 92736886 92769643 92734937 92767692 NC_060926.1 CM021569.2 99.89 True local misassembly 92775373 92781250 92773419 92779296 NC_060926.1 CM021569.2 99.85 True local misassembly 92788514 92797983 92786560 92796030 NC_060926.1 CM021569.2 99.07 True fake: not a misassembly (possible transposable element) 93795613 93797697 92806024 92808110 NC_060926.1 CM021569.2 97.99 True fake: not a misassembly (possible transposable element) 92811037 92828550 92809073 92826587 NC_060926.1 CM021569.2 99.84 True fake: not a misassembly (possible transposable element) 92748710 92750433 92834076 92835800 NC_060926.1 CM021569.2 98.03 True fake: not a misassembly (possible transposable element) 92841263 92848633 92839287 92846659 NC_060926.1 CM021569.2 98.59 True local misassembly 92851426 92857326 92849453 92855353 NC_060926.1 CM021569.2 99.1 True local misassembly 92861541 92870874 92859568 92868900 NC_060926.1 CM021569.2 99.2 True indel: stretch of mismatches 92870875 92878038 92868901 92876065 NC_060926.1 CM021569.2 98.64 True local misassembly 92902072 92907699 92900094 92905724 NC_060926.1 CM021569.2 98.9 True local misassembly 92908042 92917139 92905725 92915160 NC_060926.1 CM021569.2 95.68 True relocation, inconsistency = -218809 92704223 92706262 92921053 92923092 NC_060926.1 CM021569.2 99.08 True relocation, inconsistency = 40070 92746333 92748736 92923093 92925496 NC_060926.1 CM021569.2 98.67 True relocation, inconsistency = -24099 92724638 92726307 92925497 92927166 NC_060926.1 CM021569.2 98.73 True relocation, inconsistency = 202837 92929145 92964515 92927167 92962537 NC_060926.1 CM021569.2 99.93 True relocation, inconsistency = -235805 92728845 92729946 92962672 92963775 NC_060926.1 CM021569.2 97.92 True indel: indel (<= 5bp) 92730384 92732967 92964217 92966800 NC_060926.1 CM021569.2 98.8 True relocation, inconsistency = 7128 92740108 92740745 92966813 92967450 NC_060926.1 CM021569.2 98.05 True relocation, inconsistency = 228667 92969413 92975904 92967451 92973940 NC_060926.1 CM021569.2 98.71 True relocation, inconsistency = -10184 92965736 92968115 92973956 92976330 NC_060926.1 CM021569.2 98.03 True relocation, inconsistency = -310217 92658157 92661144 92976589 92979575 NC_060926.1 CM021569.2 98.83 True relocation, inconsistency = 320393 92981538 93004757 92979576 93002795 NC_060926.1 CM021569.2 99.86 True local misassembly 93007611 93017793 93005650 93015832 NC_060926.1 CM021569.2 99.58 True fake: not a misassembly (possible transposable element) 92455332 92456737 93021284 93022690 NC_060926.1 CM021569.2 98.85 True fake: not a misassembly (possible transposable element) 93024648 93169567 93022691 93167606 NC_060926.1 CM021569.2 99.95 True indel: stretch of mismatches 93169702 93179466 93167741 93177501 NC_060926.1 CM021569.2 99.12 True local misassembly 93183109 93216942 93181130 93214962 NC_060926.1 CM021569.2 99.88 True local misassembly 93218618 93222191 93216637 93220210 NC_060926.1 CM021569.2 98.86 True relocation, inconsistency = 113501 93335693 93340944 93220211 93225462 NC_060926.1 CM021569.2 99.28 True relocation, inconsistency = -121648 93219297 93227327 93225463 93233494 NC_060926.1 CM021569.2 99.32 True relocation, inconsistency = -218469 93011168 93016884 93235804 93241520 NC_060926.1 CM021569.2 99.21 True relocation, inconsistency = 151219 93168104 93169048 93241521 93242464 NC_060926.1 CM021569.2 97.67 True relocation, inconsistency = 75414 93245026 93248254 93243028 93246253 NC_060926.1 CM021569.2 98.42 True local misassembly 93248856 93306892 93246852 93304888 NC_060926.1 CM021569.2 99.9 True fake: not a misassembly (possible transposable element) 93085828 93092647 93305026 93311848 NC_060926.1 CM021569.2 98.97 True fake: not a misassembly (possible transposable element) 93313851 93319081 93311849 93317078 NC_060926.1 CM021569.2 98.75 True indel: stretch of mismatches 93319204 93323703 93317201 93321700 NC_060926.1 CM021569.2 99.53 True relocation, inconsistency = 54020 93378063 93378652 93322040 93322629 NC_060926.1 CM021569.2 98.47 True indel: indel (<= 5bp) 93378653 93381244 93322631 93325222 NC_060926.1 CM021569.2 98.15 True relocation, inconsistency = 44806 93426051 93426681 93325223 93325853 NC_060926.1 CM021569.2 98.96 True local misassembly 93427018 93429831 93325854 93328667 NC_060926.1 CM021569.2 97.97 True relocation, inconsistency = -62456 93367615 93370718 93328907 93332010 NC_060926.1 CM021569.2 99.39 True relocation, inconsistency = -361202 93011019 93017667 93333513 93340160 NC_060926.1 CM021569.2 99.25 True relocation, inconsistency = 324503 93342305 93343687 93340295 93341677 NC_060926.1 CM021569.2 99.42 True indel: indel (<= 5bp) 93343818 93344764 93341812 93342753 NC_060926.1 CM021569.2 98.94 True indel: indel (<= 5bp) 93345065 93355135 93343050 93353120 NC_060926.1 CM021569.2 100.0 True fake: not a misassembly (possible transposable element) 93443259 93448400 93357388 93362530 NC_060926.1 CM021569.2 98.15 True fake: not a misassembly (possible transposable element) 93364739 93374148 93362711 93372120 NC_060926.1 CM021569.2 99.21 True local misassembly 93371092 93371935 93372121 93372964 NC_060926.1 CM021569.2 98.71 True relocation, inconsistency = -443748 92928854 92929815 93373631 93374591 NC_060926.1 CM021569.2 98.75 True relocation, inconsistency = 642982 93574282 93575385 93376076 93377180 NC_060926.1 CM021569.2 98.1 True local misassembly 93577555 93578963 93379351 93380760 NC_060926.1 CM021569.2 98.43 True relocation, inconsistency = -196171 93382793 93408112 93380761 93406078 NC_060926.1 CM021569.2 99.72 True indel: stretch of mismatches 93408315 93410102 93406281 93408069 NC_060926.1 CM021569.2 98.32 True local misassembly 93406055 93410311 93408773 93413028 NC_060926.1 CM021569.2 98.78 True relocation, inconsistency = 10520 93420832 93421453 93413029 93413650 NC_060926.1 CM021569.2 99.06 True local misassembly 93415712 93416329 93413677 93414294 NC_060926.1 CM021569.2 98.22 True indel: indel (<= 5bp) 93416419 93418366 93414386 93416333 NC_060926.1 CM021569.2 98.31 True local misassembly 93424269 93428297 93416464 93420492 NC_060926.1 CM021569.2 98.96 True local misassembly 93424269 93428813 93422228 93426774 NC_060926.1 CM021569.2 99.19 True fake: not a misassembly (possible transposable element) 93472947 93479496 93428316 93434874 NC_060926.1 CM021569.2 98.46 True fake: not a misassembly (possible transposable element) 93437161 93466306 93435129 93464277 NC_060926.1 CM021569.2 99.75 True local misassembly 93469909 93475978 93467884 93473954 NC_060926.1 CM021569.2 99.08 True indel: indel (<= 5bp) 93476135 93476829 93474107 93474801 NC_060926.1 CM021569.2 97.7 True local misassembly 93477524 93490398 93475497 93488372 NC_060926.1 CM021569.2 99.68 True indel: indel (<= 5bp) 93490478 93495665 93488448 93493641 NC_060926.1 CM021569.2 98.15 True relocation, inconsistency = -133048 93363769 93364386 93494793 93495410 NC_060926.1 CM021569.2 98.54 True local misassembly 93364448 93369064 93495811 93500427 NC_060926.1 CM021569.2 98.98 True relocation, inconsistency = 257981 93627475 93629716 93500857 93503098 NC_060926.1 CM021569.2 99.42 True relocation, inconsistency = -81151 93549165 93549957 93503698 93504490 NC_060926.1 CM021569.2 97.65 True relocation, inconsistency = -43448 93506510 93565894 93504491 93563875 NC_060926.1 CM021569.2 99.92 True local misassembly 93566516 93570297 93564493 93568272 NC_060926.1 CM021569.2 97.57 True fake: not a misassembly (possible transposable element) 93539740 93542132 93568273 93570663 NC_060926.1 CM021569.2 98.91 True fake: not a misassembly (possible transposable element) 93572870 93591335 93570849 93589314 NC_060926.1 CM021569.2 99.97 True local misassembly 93592487 93632430 93590465 93630411 NC_060926.1 CM021569.2 99.79 True relocation, inconsistency = -9168 93623859 93626996 93631008 93634145 NC_060926.1 CM021569.2 97.9 True indel: stretch of mismatches 93627475 93629716 93634624 93636865 NC_060926.1 CM021569.2 99.42 True indel: stretch of mismatches 93629851 93632984 93637000 93640133 NC_060926.1 CM021569.2 99.23 True relocation, inconsistency = -72997 93560637 93563168 93640783 93643315 NC_060926.1 CM021569.2 98.11 True relocation, inconsistency = 82158 93645919 93648382 93643908 93646372 NC_060926.1 CM021569.2 98.38 True indel: stretch of mismatches 93648517 93653473 93646507 93651464 NC_060926.1 CM021569.2 98.81 True relocation, inconsistency = -644637 93008837 93009856 93651465 93652484 NC_060926.1 CM021569.2 97.23 True relocation, inconsistency = 825219 93837248 93841186 93654657 93658597 NC_060926.1 CM021569.2 98.88 True relocation, inconsistency = 187059 94030401 94032135 93660753 93662487 NC_060926.1 CM021569.2 97.81 True relocation, inconsistency = -1708817 92353039 92355125 93692208 93694294 NC_060926.1 CM021569.2 98.51 True relocation, inconsistency = 102786 92458046 92463647 93694429 93700032 NC_060926.1 CM021569.2 98.86 True relocation, inconsistency = 2127110 94613562 94618586 93722837 93727860 NC_060926.1 CM021569.2 98.77 True relocation, inconsistency = -924433 93695049 93699006 93728756 93732716 NC_060926.1 CM021569.2 98.59 True relocation, inconsistency = 35659 93777776 93804667 93775827 93802718 NC_060926.1 CM021569.2 99.73 True relocation, inconsistency = -1317365 92489394 92492571 93804810 93807987 NC_060926.1 CM021569.2 98.77 True relocation, inconsistency = 80698 92573270 92574448 93807988 93809166 NC_060926.1 CM021569.2 98.96 True relocation, inconsistency = 1095823 93670577 93675209 93809472 93814106 NC_060926.1 CM021569.2 98.94 True relocation, inconsistency = 140840 93816480 93826130 93814537 93824189 NC_060926.1 CM021569.2 98.82 True fake: not a misassembly (possible transposable element) 93915042 93916827 93824547 93826334 NC_060926.1 CM021569.2 98.63 True fake: not a misassembly (possible transposable element) 93828276 93838994 93826335 93837055 NC_060926.1 CM021569.2 98.77 True local misassembly 93891031 93893908 93889039 93891916 NC_060926.1 CM021569.2 99.24 True relocation, inconsistency = 287932 94183931 94188792 93894007 93898868 NC_060926.1 CM021569.2 99.4 True relocation, inconsistency = -1620802 92567991 92568670 93898869 93899548 NC_060926.1 CM021569.2 98.77 True relocation, inconsistency = 1332869 93903523 93908173 93901532 93906183 NC_060926.1 CM021569.2 99.08 True relocation, inconsistency = -1373136 92535681 92536558 93906827 93907704 NC_060926.1 CM021569.2 98.18 True relocation, inconsistency = -91232 92467557 92469984 93929935 93932363 NC_060926.1 CM021569.2 98.66 True relocation, inconsistency = 1464358 93934343 93954937 93932364 93952958 NC_060926.1 CM021569.2 99.35 True relocation, inconsistency = 677040 94631978 94633950 93952959 93954935 NC_060926.1 CM021569.2 97.95 True local misassembly 94635311 94637818 93954936 93957443 NC_060926.1 CM021569.2 99.28 True relocation, inconsistency = -678397 93959945 93976513 93957967 93974535 NC_060926.1 CM021569.2 98.23 True local misassembly 93978847 93987674 93976868 93985694 NC_060926.1 CM021569.2 99.04 True local misassembly 93988481 93991365 93986502 93989386 NC_060926.1 CM021569.2 98.68 True indel: indel (<= 5bp) 93991366 93992387 93989388 93990409 NC_060926.1 CM021569.2 95.89 True local misassembly 93993068 93997065 93990915 93994914 NC_060926.1 CM021569.2 98.75 True indel: indel (<= 5bp) 93997203 94023584 93995049 94021428 NC_060926.1 CM021569.2 99.69 True indel: stretch of mismatches 94023585 94081211 94021429 94079064 NC_060926.1 CM021569.2 98.39 True local misassembly 94081799 94131372 94079653 94129234 NC_060926.1 CM021569.2 98.45 True indel: stretch of mismatches 94131373 94165011 94129235 94162880 NC_060926.1 CM021569.2 98.68 True local misassembly 94165692 94166198 94162881 94163387 NC_060926.1 CM021569.2 97.65 True local misassembly 94166199 94171490 94164068 94169359 NC_060926.1 CM021569.2 98.56 True indel: indel (<= 5bp) 94171491 94175943 94169361 94173813 NC_060926.1 CM021569.2 99.73 True indel: indel (<= 5bp) 94175944 94181841 94173815 94179712 NC_060926.1 CM021569.2 98.24 True relocation, inconsistency = -282501 93906706 93907673 94187078 94188045 NC_060926.1 CM021569.2 97.77 True relocation, inconsistency = 282497 94190171 94204388 94188046 94202262 NC_060926.1 CM021569.2 99.43 True local misassembly 94221376 94232291 94219252 94230166 NC_060926.1 CM021569.2 99.51 True indel: stretch of mismatches 94232442 94236146 94230317 94234023 NC_060926.1 CM021569.2 97.98 True relocation, inconsistency = -1359334 92877545 92879216 94234756 94236427 NC_060926.1 CM021569.2 98.44 True relocation, inconsistency = 1068512 93947729 93948242 94236428 94236941 NC_060926.1 CM021569.2 99.08 True relocation, inconsistency = 62797 94011040 94013383 94236942 94239283 NC_060926.1 CM021569.2 97.81 True relocation, inconsistency = -49206 93964178 93975425 94239284 94250531 NC_060926.1 CM021569.2 98.56 True relocation, inconsistency = -1289370 92687045 92690873 94251521 94255348 NC_060926.1 CM021569.2 98.16 True relocation, inconsistency = 1566603 94257477 94264680 94255349 94262553 NC_060926.1 CM021569.2 99.01 True fake: not a misassembly (possible transposable element) 94087822 94088915 94262554 94263647 NC_060926.1 CM021569.2 95.33 True fake: not a misassembly (possible transposable element) 94265776 94274851 94263648 94272725 NC_060926.1 CM021569.2 99.02 True local misassembly 94276603 94287597 94274473 94285467 NC_060926.1 CM021569.2 98.6 True indel: stretch of mismatches 94287598 94299820 94285468 94297674 NC_060926.1 CM021569.2 98.62 True indel: stretch of mismatches 94299821 94321772 94297675 94319626 NC_060926.1 CM021569.2 98.56 True relocation, inconsistency = 16311 94338084 94339665 94319627 94321208 NC_060926.1 CM021569.2 97.86 True relocation, inconsistency = -16311 94323355 94433723 94321209 94431602 NC_060926.1 CM021569.2 98.41 True relocation, inconsistency = 193391 94627321 94629487 94431809 94433975 NC_060926.1 CM021569.2 97.04 True relocation, inconsistency = -550842 94078646 94099471 94433976 94454984 NC_060926.1 CM021569.2 96.24 True relocation, inconsistency = 357628 94457175 94473024 94455060 94470912 NC_060926.1 CM021569.2 98.67 True local misassembly 94475898 94485763 94473786 94483650 NC_060926.1 CM021569.2 99.12 True relocation, inconsistency = -201321 94284443 94285245 94483651 94484453 NC_060926.1 CM021569.2 97.29 True indel: indel (<= 5bp) 94285247 94287499 94484454 94486706 NC_060926.1 CM021569.2 97.74 True local misassembly 94287500 94288197 94487045 94487742 NC_060926.1 CM021569.2 99.13 True relocation, inconsistency = 201662 94489860 94498186 94487743 94496067 NC_060926.1 CM021569.2 97.73 True relocation, inconsistency = 45539 94543726 94556849 94496068 94509189 NC_060926.1 CM021569.2 97.31 True relocation, inconsistency = -45545 94511305 94518138 94509190 94516023 NC_060926.1 CM021569.2 98.04 True indel: stretch of mismatches 94518139 94530282 94516024 94528168 NC_060926.1 CM021569.2 97.43 True local misassembly 94531246 94556849 94529132 94554740 NC_060926.1 CM021569.2 98.47 True relocation, inconsistency = -140190 94416660 94429427 94554741 94567507 NC_060926.1 CM021569.2 97.24 True relocation, inconsistency = 140190 94569618 94593166 94567508 94591059 NC_060926.1 CM021569.2 98.55 True indel: stretch of mismatches 94593167 94615064 94591060 94612956 NC_060926.1 CM021569.2 98.93 True indel: stretch of mismatches 94615065 94634291 94612957 94632186 NC_060926.1 CM021569.2 98.85 True local misassembly 94635565 94636311 94633460 94634206 NC_060926.1 CM021569.2 97.86 True indel: indel (<= 5bp) 94636312 94637053 94634208 94634949 NC_060926.1 CM021569.2 97.84 True indel: indel (> 5bp) 94637054 94639704 94634956 94637606 NC_060926.1 CM021569.2 97.4 True indel: indel (<= 5bp) 94639705 94648079 94637608 94645982 NC_060926.1 CM021569.2 99.49 True indel: indel (<= 5bp) 94648080 94648722 94645987 94646629 NC_060926.1 CM021569.2 97.82 True local misassembly 94649065 94649991 94646630 94647556 NC_060926.1 CM021569.2 97.95 True local misassembly 94650550 94651256 94647767 94648473 NC_060926.1 CM021569.2 95.62 True local misassembly 94651595 94654195 94648474 94651074 NC_060926.1 CM021569.2 98.58 True indel: indel (<= 5bp) 94654392 94656993 94651266 94653867 NC_060926.1 CM021569.2 98.31 True local misassembly 94656994 94658275 94654210 94655491 NC_060926.1 CM021569.2 96.1 True indel: indel (<= 5bp) 94658280 94658783 94655492 94655995 NC_060926.1 CM021569.2 96.83 True local misassembly 94658784 94661018 94656338 94658572 NC_060926.1 CM021569.2 96.69 True local misassembly 94664067 96306795 94661966 96305165 NC_060926.1 CM021569.2 99.79 True relocation, inconsistency = -38545 96306796 96531014 96529350 96305166 NC_060926.1 CM021569.2 99.72 True inversion 96531015 97854680 96529351 97853117 NC_060926.1 CM021569.2 99.89 True relocation, inconsistency = -125770 97854681 97867082 97865519 97853118 NC_060926.1 CM021569.2 99.46 True inversion 97867083 99118610 97865520 99116506 NC_060926.1 CM021569.2 99.89 True local misassembly 99118488 101927727 99117885 101925929 NC_060926.1 CM021569.2 99.72 True indel: indel (<= 5bp) 101927838 102811264 101926036 102809468 NC_060926.1 CM021569.2 99.7 True local misassembly 102811710 105284864 102809716 105283669 NC_060926.1 CM021569.2 99.82 True local misassembly 105284972 108289102 105283930 108285005 NC_060926.1 CM021569.2 99.73 True indel: indel (> 5bp) 108289257 109659819 108285225 109656566 NC_060926.1 CM021569.2 99.76 True local misassembly 109660842 112169123 109656678 112164706 NC_060926.1 CM021569.2 99.82 True indel: indel (<= 5bp) 112169157 114027474 112164745 114024287 NC_060926.1 CM021569.2 99.67 True indel: indel (> 5bp) 114027876 114796823 114024705 114792139 NC_060926.1 CM021569.2 99.44 True local misassembly 114797046 119301092 114792176 119295491 NC_060926.1 CM021569.2 99.88 True indel: indel (> 5bp) 119301201 119877857 119295623 119872372 NC_060926.1 CM021569.2 99.72 True local misassembly 119878471 121734594 119872808 121729864 NC_060926.1 CM021569.2 99.78 True local misassembly 121735757 122972401 121730142 122967409 NC_060926.1 CM021569.2 99.83 True relocation, inconsistency = -10303 122962099 123669958 122967410 123675174 NC_060926.1 CM021569.2 99.67 True local misassembly 123670709 124119098 123675612 124124114 NC_060926.1 CM021569.2 99.5 True local misassembly 124120380 124393093 124125465 124398370 NC_060926.1 CM021569.2 99.66 True local misassembly 124393145 126172366 124398672 126169543 NC_060926.1 CM021569.2 99.32 True local misassembly 126172527 127639712 126169612 127637861 NC_060926.1 CM021569.2 99.63 True indel: indel (> 5bp) 127639778 129393006 127637933 129398325 NC_060926.1 CM021569.2 99.28 True indel: stretch of mismatches 129393278 129840916 129398597 129849590 NC_060926.1 CM021569.2 99.03 True indel: stretch of mismatches 129840917 130490461 129849591 130499090 NC_060926.1 CM021569.2 99.75 True relocation, inconsistency = 1219995 131710463 131711139 130499773 130499097 NC_060926.1 CM021569.2 96.75 True local misassembly 131708737 131710500 130502670 130500907 NC_060926.1 CM021569.2 98.19 True local misassembly 131706527 131707426 130504345 130503446 NC_060926.1 CM021569.2 98.33 True fake: not a misassembly (possible transposable element) 131098751 131099657 130505288 130504382 NC_060926.1 CM021569.2 95.81 True fake: not a misassembly (possible transposable element) 131677565 131706090 130533946 130505422 NC_060926.1 CM021569.2 99.35 True translocation 124969374 124971088 130533968 130535682 NC_060933.1 CM021569.2 99.7 True translocation 130524930 132226883 130535683 132237564 NC_060926.1 CM021569.2 99.81 True local misassembly 132226983 136790366 132237882 136798301 NC_060926.1 CM021569.2 99.74 True local misassembly 136793194 137865346 136800275 137872542 NC_060926.1 CM021569.2 99.88 True local misassembly 137865400 138693158 137872707 138699851 NC_060926.1 CM021569.2 99.7 True local misassembly 138696748 143267513 138703441 143274554 NC_060926.1 CM021569.2 99.79 True local misassembly 143270776 151585166 143274555 151573040 NC_060926.1 CM021569.2 99.65 True local misassembly 151585594 156124000 151573189 156107787 NC_060926.1 CM021569.2 99.74 True fake: not a misassembly (possible transposable element) 67510708 67516748 156107805 156113845 NC_060941.1 CM021569.2 99.97 True fake: not a misassembly (possible transposable element) 156124029 161048104 156113882 161038243 NC_060926.1 CM021569.2 99.51 True local misassembly 161048914 166871482 161039071 166860376 NC_060926.1 CM021569.2 99.84 True indel: indel (> 5bp) 166871581 167146816 166860523 167135796 NC_060926.1 CM021569.2 99.62 True local misassembly 167148000 168846517 167135904 168836477 NC_060926.1 CM021569.2 99.55 True indel: indel (> 5bp) 168846658 169449660 168836594 169439554 NC_060926.1 CM021569.2 99.81 True local misassembly 169450739 169961934 169440056 169950467 NC_060926.1 CM021569.2 99.48 True local misassembly 169962573 170218394 169950468 170203946 NC_060926.1 CM021569.2 98.67 True indel: indel (> 5bp) 170218426 176205366 170204000 176184772 NC_060926.1 CM021569.2 99.7 True indel: indel (> 5bp) 176205451 176302351 176184846 176281775 NC_060926.1 CM021569.2 99.71 True local misassembly 176301748 181185299 176281781 181169640 NC_060926.1 CM021569.2 99.66 True local misassembly 181185472 183599327 181169710 183578988 NC_060926.1 CM021569.2 99.55 True indel: indel (> 5bp) 183599515 184170909 183579154 184150446 NC_060926.1 CM021569.2 99.73 True local misassembly 184170938 190512493 184150585 190491270 NC_060926.1 CM021569.2 99.85 True indel: indel (> 5bp) 190512578 195188527 190491348 195167844 NC_060926.1 CM021569.2 99.87 True local misassembly 195189287 197392835 195168158 197372800 NC_060926.1 CM021569.2 99.86 True indel: stretch of mismatches 197392836 205862452 197372801 205842429 NC_060926.1 CM021569.2 99.84 True local misassembly 205863221 207968595 205843273 207952694 NC_060926.1 CM021569.2 99.54 True relocation, inconsistency = -8192 207968644 211698420 207960935 211688321 NC_060926.1 CM021569.2 99.71 True local misassembly 211698060 214318196 211689091 214308854 NC_060926.1 CM021569.2 99.8 True indel: indel (> 5bp) 214318303 214345082 214309003 214335801 NC_060926.1 CM021569.2 99.51 True indel: indel (> 5bp) 214345115 218293115 214335824 218285400 NC_060926.1 CM021569.2 99.65 True local misassembly 218294157 219676050 218285594 219666925 NC_060926.1 CM021569.2 99.87 True local misassembly 219676285 222051867 219670817 222044533 NC_060926.1 CM021569.2 99.75 True indel: indel (> 5bp) 222052082 222601351 222044666 222593909 NC_060926.1 CM021569.2 99.92 True indel: indel (<= 5bp) 222601659 223300675 222594213 223293202 NC_060926.1 CM021569.2 99.8 True indel: indel (> 5bp) 223300745 224911417 223293266 224903941 NC_060926.1 CM021569.2 99.78 True local misassembly 224911523 227528490 224904944 227521664 NC_060926.1 CM021569.2 99.74 True indel: indel (> 5bp) 227528835 227685480 227521929 227678829 NC_060926.1 CM021569.2 99.6 True local misassembly 227686464 230568880 227680453 230558724 NC_060926.1 CM021569.2 99.63 True indel: indel (> 5bp) 230569009 230601860 230558895 230591740 NC_060926.1 CM021569.2 99.41 True indel: indel (> 5bp) 230601942 232314175 230591871 232300514 NC_060926.1 CM021569.2 99.56 True local misassembly 232319427 232320106 232301878 232302557 NC_060926.1 CM021569.2 99.12 True local misassembly 232320197 232321214 232302558 232303575 NC_060926.1 CM021569.2 99.21 True local misassembly 232321702 232322812 232304378 232305488 NC_060926.1 CM021569.2 98.65 True local misassembly 232324454 232327115 232306069 232308730 NC_060926.1 CM021569.2 98.87 True local misassembly 232327504 232328883 232309610 232310989 NC_060926.1 CM021569.2 99.71 True local misassembly 232328884 232329899 232311080 232312095 NC_060926.1 CM021569.2 99.31 True local misassembly 232331149 232336587 232312455 232317893 NC_060926.1 CM021569.2 99.5 True indel: indel (> 5bp) 232336744 232342891 232318015 232324162 NC_060926.1 CM021569.2 99.89 True indel: indel (<= 5bp) 232342892 232344830 232324164 232326102 NC_060926.1 CM021569.2 99.95 True indel: indel (<= 5bp) 232344831 232351516 232326105 232332790 NC_060926.1 CM021569.2 99.87 True indel: stretch of mismatches 232351680 232354751 232332954 232336025 NC_060926.1 CM021569.2 99.93 True local misassembly 232356361 233482033 232337703 233461829 NC_060926.1 CM021569.2 99.65 True local misassembly 233482920 233625156 233462497 233604736 NC_060926.1 CM021569.2 99.8 True local misassembly 233625434 235138249 233604790 235115530 NC_060926.1 CM021569.2 99.54 True local misassembly 235138216 239360614 235115614 239338265 NC_060926.1 CM021569.2 99.69 True local misassembly 239361118 240565715 239340020 240543875 NC_060926.1 CM021569.2 99.15 True local misassembly 240565738 241120559 240544029 241100236 NC_060926.1 CM021569.2 99.16 True local misassembly 241121420 241136326 241100389 241115173 NC_060926.1 CM021569.2 98.95 True local misassembly 241137820 242390255 241118647 242368709 NC_060926.1 CM021569.2 99.03 True local misassembly 242391243 242399835 242369753 242378291 NC_060926.1 CM021569.2 98.93 True local misassembly 242401943 242696752 242379129 242681487 NC_060926.1 CM021569.2 95.24 True CONTIG CM021569.2 242681487 misassembled 2297 511662 2496 510788 NC_060927.1 CM021570.2 99.58 True local misassembly 512067 1169546 511304 1168796 NC_060927.1 CM021570.2 99.79 True local misassembly 1170091 1701370 1168797 1700047 NC_060927.1 CM021570.2 99.61 True local misassembly 1702419 3229691 1700709 3228639 NC_060927.1 CM021570.2 99.61 True indel: indel (> 5bp) 3229819 3786544 3228694 3785111 NC_060927.1 CM021570.2 99.69 True indel: indel (> 5bp) 3786628 6262302 3785163 6264044 NC_060927.1 CM021570.2 99.63 True indel: stretch of mismatches 6262436 16310734 6264178 16309722 NC_060927.1 CM021570.2 99.68 True local misassembly 16310821 16404808 16310030 16403949 NC_060927.1 CM021570.2 99.71 True local misassembly 16405495 16563353 16404791 16562376 NC_060927.1 CM021570.2 99.52 True indel: indel (<= 5bp) 16563459 16566921 16562480 16565937 NC_060927.1 CM021570.2 99.62 True indel: indel (> 5bp) 16567228 16585573 16566259 16584602 NC_060927.1 CM021570.2 99.61 True local misassembly 16587257 16597747 16586269 16596760 NC_060927.1 CM021570.2 99.86 True local misassembly 16599668 16601857 16598684 16600872 NC_060927.1 CM021570.2 99.27 True local misassembly 16602654 20305193 16601683 20304053 NC_060927.1 CM021570.2 99.77 True local misassembly 20310059 21152454 20304352 21146604 NC_060927.1 CM021570.2 99.82 True local misassembly 21154397 28367456 21147897 28368611 NC_060927.1 CM021570.2 99.66 True indel: stretch of mismatches 28367919 36301213 28369074 36301336 NC_060927.1 CM021570.2 99.78 True local misassembly 36302116 36454948 36301951 36454723 NC_060927.1 CM021570.2 99.67 True local misassembly 36454996 38088758 36454909 38088563 NC_060927.1 CM021570.2 99.8 True local misassembly 38089438 41574786 38090566 41570371 NC_060927.1 CM021570.2 99.58 True local misassembly 41576861 46757095 41570372 46750100 NC_060927.1 CM021570.2 99.84 True local misassembly 46757259 46769268 46750363 46762568 NC_060927.1 CM021570.2 98.12 True relocation, inconsistency = 55609 46824878 47569026 46762569 47503584 NC_060927.1 CM021570.2 99.4 True local misassembly 47569016 48239236 47503669 48174121 NC_060927.1 CM021570.2 99.75 True local misassembly 48240288 48949604 48175247 48884108 NC_060927.1 CM021570.2 99.83 True local misassembly 48949311 55402522 48884756 55335617 NC_060927.1 CM021570.2 99.8 True indel: indel (> 5bp) 55402544 57008426 55335649 56934957 NC_060927.1 CM021570.2 99.42 True indel: indel (> 5bp) 57008612 57594507 56935172 57521203 NC_060927.1 CM021570.2 99.69 True indel: indel (<= 5bp) 57594663 60027870 57521361 59953808 NC_060927.1 CM021570.2 99.8 True local misassembly 60028136 60593245 59954192 60519080 NC_060927.1 CM021570.2 99.71 True local misassembly 60594009 62643326 60520132 62569756 NC_060927.1 CM021570.2 99.79 True indel: indel (> 5bp) 62643424 63257944 62569894 63184441 NC_060927.1 CM021570.2 99.9 True indel: stretch of mismatches 63257945 64358592 63184442 64285687 NC_060927.1 CM021570.2 99.7 True local misassembly 64358737 69174645 64286119 69092388 NC_060927.1 CM021570.2 99.62 True local misassembly 69174931 71473255 69092478 71390544 NC_060927.1 CM021570.2 99.81 True indel: indel (> 5bp) 71473326 76721337 71390649 76638477 NC_060927.1 CM021570.2 99.78 True indel: indel (<= 5bp) 76721367 78237493 76638509 78153147 NC_060927.1 CM021570.2 99.74 True indel: indel (> 5bp) 78237587 79582913 78153173 79498485 NC_060927.1 CM021570.2 99.79 True local misassembly 79583687 80069727 79498486 79984521 NC_060927.1 CM021570.2 99.71 True local misassembly 80069900 82205897 79986125 82122192 NC_060927.1 CM021570.2 99.77 True local misassembly 82207956 82517467 82122869 82432614 NC_060927.1 CM021570.2 99.73 True local misassembly 82517982 86891297 82433483 86784038 NC_060927.1 CM021570.2 99.12 True indel: indel (> 5bp) 86891349 86932406 86784056 86824700 NC_060927.1 CM021570.2 98.11 True local misassembly 86934233 90428106 86827331 90324860 NC_060927.1 CM021570.2 99.74 True local misassembly 90428961 90558034 90324861 90453245 NC_060927.1 CM021570.2 99.41 True local misassembly 90559360 90626493 90454574 90521710 NC_060927.1 CM021570.2 99.95 True local misassembly 90626494 90805709 90523071 90702457 NC_060927.1 CM021570.2 99.82 True indel: indel (<= 5bp) 90805971 91068839 90702718 90965596 NC_060927.1 CM021570.2 99.45 True indel: stretch of mismatches 91068978 91222103 90965735 91118861 NC_060927.1 CM021570.2 99.55 True local misassembly 91222954 91225508 91119714 91122269 NC_060927.1 CM021570.2 96.36 True local misassembly 91226909 91313837 91123670 91210606 NC_060927.1 CM021570.2 98.92 True relocation, inconsistency = -115507 91198331 91226331 91210607 91238610 NC_060927.1 CM021570.2 97.44 True local misassembly 91231430 91279866 91238611 91287053 NC_060927.1 CM021570.2 97.62 True relocation, inconsistency = 56907 91336774 91339315 91287054 91289594 NC_060927.1 CM021570.2 96.42 True local misassembly 91334351 91335047 91289726 91290422 NC_060927.1 CM021570.2 97.85 True local misassembly 91341932 91342712 91290514 91291294 NC_060927.1 CM021570.2 97.7 True relocation, inconsistency = -10192 91332978 91335037 91291752 91293811 NC_060927.1 CM021570.2 96.43 True local misassembly 91341831 91451760 91293812 91403714 NC_060927.1 CM021570.2 97.08 True local misassembly 91451291 91763057 91404093 91714009 NC_060927.1 CM021570.2 98.93 True indel: indel (<= 5bp) 91763163 91768707 91714112 91719650 NC_060927.1 CM021570.2 98.47 True indel: stretch of mismatches 91768946 91905771 91719889 91856720 NC_060927.1 CM021570.2 99.83 True relocation, inconsistency = 8675 91915288 91968673 91857562 91910936 NC_060927.1 CM021570.2 99.77 True indel: stretch of mismatches 91968876 92021888 91911139 91964147 NC_060927.1 CM021570.2 99.58 True relocation, inconsistency = 211013 92232902 92239020 91964148 91970267 NC_060927.1 CM021570.2 99.49 True relocation, inconsistency = 303220 92542241 92547886 91970268 91975913 NC_060927.1 CM021570.2 99.42 True relocation, inconsistency = -10551 92537336 92539677 91975914 91978255 NC_060927.1 CM021570.2 99.84 True relocation, inconsistency = -488900 92051277 92071146 91978755 91998623 NC_060927.1 CM021570.2 99.75 True relocation, inconsistency = -39096 92032051 92036717 91998624 92003295 NC_060927.1 CM021570.2 99.58 True relocation, inconsistency = 39101 92075819 92088963 92003296 92016440 NC_060927.1 CM021570.2 99.7 True indel: stretch of mismatches 92088964 92109993 92016441 92037476 NC_060927.1 CM021570.2 99.75 True indel: indel (<= 5bp) 92110485 92119314 92037966 92046795 NC_060927.1 CM021570.2 99.76 True indel: stretch of mismatches 92119315 92135926 92046796 92063411 NC_060927.1 CM021570.2 99.74 True fake: not a misassembly (possible transposable element) 92892028 92896033 92063412 92067417 NC_060927.1 CM021570.2 99.62 True fake: not a misassembly (possible transposable element) 92140089 92182062 92067575 92109541 NC_060927.1 CM021570.2 99.66 True local misassembly 92182470 92186686 92109612 92113828 NC_060927.1 CM021570.2 99.43 True relocation, inconsistency = 3810383 95997450 96005319 92114209 92122070 NC_060927.1 CM021570.2 99.17 True relocation, inconsistency = -115307 95890692 95897664 92122750 92129722 NC_060927.1 CM021570.2 99.4 True relocation, inconsistency = 381585 96279250 96281062 92129723 92131534 NC_060927.1 CM021570.2 97.86 True local misassembly 96275446 96278206 92131700 92134459 NC_060927.1 CM021570.2 98.08 True local misassembly 96275446 96278206 92134591 92137350 NC_060927.1 CM021570.2 98.12 True local misassembly 96275446 96278206 92137482 92140241 NC_060927.1 CM021570.2 98.08 True fake: not a misassembly (possible transposable element) 96269667 96272378 92140373 92143084 NC_060927.1 CM021570.2 97.86 True fake: not a misassembly (possible transposable element) 96281258 96283938 92143296 92145975 NC_060927.1 CM021570.2 97.87 True relocation, inconsistency = -8672 96275446 96278206 92146155 92148914 NC_060927.1 CM021570.2 97.97 True relocation, inconsistency = -66812 96211551 96218265 92149071 92155779 NC_060927.1 CM021570.2 99.14 True relocation, inconsistency = -311890 95906376 95911036 92155780 92160439 NC_060927.1 CM021570.2 99.31 True relocation, inconsistency = -17346 95893691 95899472 92160440 92166221 NC_060927.1 CM021570.2 99.27 True relocation, inconsistency = -3648826 92250647 92388910 92166222 92304484 NC_060927.1 CM021570.2 99.9 True relocation, inconsistency = 3830622 96219533 96225817 92304485 92310768 NC_060927.1 CM021570.2 99.23 True relocation, inconsistency = -332127 95893691 95899479 92310769 92316556 NC_060927.1 CM021570.2 99.6 True relocation, inconsistency = -3498495 92400985 92443573 92316557 92359144 NC_060927.1 CM021570.2 99.84 True relocation, inconsistency = -219713 92223861 92224629 92359145 92359913 NC_060927.1 CM021570.2 99.69 True relocation, inconsistency = 645048 92869678 92887823 92359914 92377719 NC_060927.1 CM021570.2 97.83 True relocation, inconsistency = -8673 92879151 92889136 92377720 92387706 NC_060927.1 CM021570.2 99.63 True relocation, inconsistency = -417004 92474023 92529950 92389597 92445527 NC_060927.1 CM021570.2 99.86 True relocation, inconsistency = 338947 92869516 92885717 92446146 92462008 NC_060927.1 CM021570.2 96.63 True relocation, inconsistency = -317843 92567875 92607161 92462009 92501028 NC_060927.1 CM021570.2 99.02 True relocation, inconsistency = 2023529 94630691 94632221 92501029 92502560 NC_060927.1 CM021570.2 95.37 True relocation, inconsistency = -1909697 92722525 92725260 92502561 92505297 NC_060927.1 CM021570.2 97.41 True relocation, inconsistency = 51278 92780105 92790741 92508864 92519742 NC_060927.1 CM021570.2 97.33 True relocation, inconsistency = -164791 92625951 92661513 92519743 92555304 NC_060927.1 CM021570.2 99.65 True relocation, inconsistency = -52219 92609295 92610796 92555305 92556806 NC_060927.1 CM021570.2 99.82 True local misassembly 92611012 92611551 92556807 92557346 NC_060927.1 CM021570.2 98.89 True indel: indel (<= 5bp) 92611554 92612532 92557347 92558325 NC_060927.1 CM021570.2 99.69 True relocation, inconsistency = 52252 92664998 92671499 92558539 92565040 NC_060927.1 CM021570.2 98.88 True relocation, inconsistency = 116216 92787716 92791437 92565041 92568758 NC_060927.1 CM021570.2 97.53 True relocation, inconsistency = 65188 92856660 92865449 92568793 92577533 NC_060927.1 CM021570.2 97.79 True relocation, inconsistency = -181243 92684207 92718325 92577534 92611359 NC_060927.1 CM021570.2 98.61 True relocation, inconsistency = -18718 92699608 92703529 92611360 92615286 NC_060927.1 CM021570.2 97.53 True relocation, inconsistency = 74043 92778014 92778736 92615728 92616450 NC_060927.1 CM021570.2 97.51 True indel: indel (<= 5bp) 92778738 92779794 92616451 92617507 NC_060927.1 CM021570.2 97.82 True local misassembly 92779953 92781322 92617508 92618877 NC_060927.1 CM021570.2 98.76 True relocation, inconsistency = -55276 92726211 92747724 92619042 92640553 NC_060927.1 CM021570.2 99.6 True relocation, inconsistency = 109657 92857382 92859673 92640554 92642845 NC_060927.1 CM021570.2 98.32 True local misassembly 92859794 92861245 92643302 92644753 NC_060927.1 CM021570.2 98.62 True indel: indel (<= 5bp) 92861699 92863081 92645204 92646586 NC_060927.1 CM021570.2 98.41 True relocation, inconsistency = -109319 92755003 92774619 92647827 92667442 NC_060927.1 CM021570.2 99.52 True local misassembly 92778014 92792504 92670833 92685044 NC_060927.1 CM021570.2 97.26 True fake: not a misassembly (possible transposable element) 92852948 92859828 92685287 92692167 NC_060927.1 CM021570.2 99.59 True fake: not a misassembly (possible transposable element) 92799890 92817316 92692425 92709860 NC_060927.1 CM021570.2 99.39 True translocation 3411598 3412670 92709861 92710933 NC_060946.1 CM021570.2 96.59 True local misassembly 3412671 3414172 92711097 92712598 NC_060946.1 CM021570.2 97.87 True local misassembly 3414929 3415679 92713350 92714100 NC_060946.1 CM021570.2 96.4 True translocation 92822442 92830403 92714851 92722815 NC_060927.1 CM021570.2 98.5 True indel: stretch of mismatches 92830404 92844184 92722816 92736597 NC_060927.1 CM021570.2 99.22 True local misassembly 92845695 92905678 92737898 92797718 NC_060927.1 CM021570.2 99.3 True local misassembly 92903758 92972454 92797719 92864205 NC_060927.1 CM021570.2 96.81 True indel: stretch of mismatches 92972455 93124651 92864206 93016404 NC_060927.1 CM021570.2 99.94 True indel: stretch of mismatches 93124652 93134224 93016405 93025977 NC_060927.1 CM021570.2 99.98 True indel: stretch of mismatches 93134225 93232053 93025978 93123806 NC_060927.1 CM021570.2 99.96 True indel: stretch of mismatches 93232054 93302660 93123807 93194403 NC_060927.1 CM021570.2 98.74 True translocation 1753739 1754626 93194404 93195301 NC_060945.1 CM021570.2 96.39 True translocation 93798463 93804163 93195302 93200998 NC_060927.1 CM021570.2 98.14 True relocation, inconsistency = 127131 93931524 93933624 93201228 93203374 NC_060927.1 CM021570.2 95.95 True relocation, inconsistency = -621989 93312437 93371176 93204176 93262925 NC_060927.1 CM021570.2 99.87 True relocation, inconsistency = 320414 93692203 93692963 93263538 93264298 NC_060927.1 CM021570.2 97.36 True relocation, inconsistency = -489800 93203164 93204851 93264299 93265986 NC_060927.1 CM021570.2 98.61 True relocation, inconsistency = 511113 93715965 93719026 93265987 93269048 NC_060927.1 CM021570.2 99.25 True relocation, inconsistency = 1133448 94852476 94856181 93269050 93272750 NC_060927.1 CM021570.2 98.79 True translocation 2963993 2965753 93273212 93274966 NC_060946.1 CM021570.2 97.1 True translocation 1447820 1448643 93274967 93275790 NC_060939.1 CM021570.2 96.12 True translocation 95346312 95348401 93275865 93277954 NC_060927.1 CM021570.2 96.51 True relocation, inconsistency = -1962080 93388493 93449551 93280126 93341184 NC_060927.1 CM021570.2 99.97 True indel: stretch of mismatches 93449552 93502339 93341185 93393972 NC_060927.1 CM021570.2 99.97 True indel: stretch of mismatches 93502340 93540149 93393973 93431781 NC_060927.1 CM021570.2 99.97 True local misassembly 93541293 93551259 93432925 93442891 NC_060927.1 CM021570.2 99.73 True indel: stretch of mismatches 93551260 93580042 93442892 93471655 NC_060927.1 CM021570.2 99.64 True translocation 3406343 3407750 93471656 93473068 NC_060946.1 CM021570.2 95.62 True translocation 3320932 3321459 93473108 93473635 NC_060937.1 CM021570.2 97.35 True indel: indel (<= 5bp) 3321460 3322210 93473641 93474391 NC_060937.1 CM021570.2 97.2 True local misassembly 3322962 3324012 93475148 93476198 NC_060937.1 CM021570.2 97.81 True relocation, inconsistency = -3218800 108481 110940 93479467 93481926 NC_060937.1 CM021570.2 97.24 True translocation 1247827 1248587 93482473 93483238 NC_060939.1 CM021570.2 96.8 True translocation 1571379 1573504 93483239 93485364 NC_060945.1 CM021570.2 96.15 True translocation 93594316 93620351 93485793 93511829 NC_060927.1 CM021570.2 99.74 True local misassembly 93621622 93635847 93513091 93527308 NC_060927.1 CM021570.2 99.86 True indel: stretch of mismatches 93635848 93867613 93527309 93759074 NC_060927.1 CM021570.2 99.97 True translocation 1333873 1334793 93759576 93760495 NC_060945.1 CM021570.2 96.42 True translocation 1513382 1513883 93783497 93783998 NC_060939.1 CM021570.2 96.61 True indel: indel (<= 5bp) 1513884 1514471 93784003 93784590 NC_060939.1 CM021570.2 96.09 True local misassembly 1514998 1517151 93785004 93787157 NC_060939.1 CM021570.2 97.95 True translocation 93895948 94075377 93787158 93966572 NC_060927.1 CM021570.2 99.92 True translocation 1365750 1366670 93975031 93975951 NC_060939.1 CM021570.2 96.85 True local misassembly 1366671 1368104 93976120 93977553 NC_060939.1 CM021570.2 98.54 True indel: indel (<= 5bp) 1368105 1369169 93977559 93978623 NC_060939.1 CM021570.2 98.12 True translocation 94087813 94124627 93978812 94015616 NC_060927.1 CM021570.2 99.76 True indel: stretch of mismatches 94124628 94532357 94015617 94423349 NC_060927.1 CM021570.2 99.93 True indel: stretch of mismatches 94532358 94572684 94423350 94463677 NC_060927.1 CM021570.2 99.81 True relocation, inconsistency = 777144 95349829 95351263 94463678 94465120 NC_060927.1 CM021570.2 96.36 True translocation 1681598 1686632 94467391 94472442 NC_060945.1 CM021570.2 96.71 True translocation 1047892 1051356 94477316 94480743 NC_060937.1 CM021570.2 96.0 True translocation 94591041 94760291 94482051 94651300 NC_060927.1 CM021570.2 99.91 True local misassembly 94818714 94847012 94709613 94737812 NC_060927.1 CM021570.2 98.77 True local misassembly 94847673 94858654 94738467 94749458 NC_060927.1 CM021570.2 98.8 True relocation, inconsistency = 401949 95260604 95262646 94749459 94751493 NC_060927.1 CM021570.2 97.04 True relocation, inconsistency = -2527976 92738642 92745153 94755465 94761979 NC_060927.1 CM021570.2 98.53 True translocation 1406509 1410098 94768872 94772461 NC_060945.1 CM021570.2 97.27 True translocation 1364833 1370671 94773804 94779644 NC_060939.1 CM021570.2 96.38 True translocation 94889019 94912921 94779771 94803674 NC_060927.1 CM021570.2 99.61 True indel: indel (> 5bp) 94913347 94942304 94804023 94832934 NC_060927.1 CM021570.2 98.91 True translocation 3404167 3409668 94832935 94838431 NC_060946.1 CM021570.2 97.14 True translocation 4705448 4706997 94840390 94838840 NC_060937.1 CM021570.2 98.84 True translocation 94949674 94951087 94840391 94841803 NC_060927.1 CM021570.2 97.98 True local misassembly 94953197 94982138 94843910 94872849 NC_060927.1 CM021570.2 99.83 True local misassembly 94997190 95001774 94881651 94886236 NC_060927.1 CM021570.2 98.8 True local misassembly 95001634 95026827 94891935 94917128 NC_060927.1 CM021570.2 98.96 True indel: stretch of mismatches 95026828 95044620 94917129 94934913 NC_060927.1 CM021570.2 98.64 True fake: not a misassembly (possible transposable element) 1829310 1830346 94949476 94950512 NC_060945.1 CM021570.2 99.71 True fake: not a misassembly (possible transposable element) 95062309 95065714 94952613 94955977 NC_060927.1 CM021570.2 97.12 True fake: not a misassembly (possible transposable element) 94990909 94993740 94956109 94958940 NC_060927.1 CM021570.2 98.09 True fake: not a misassembly (possible transposable element) 95068829 95077011 94959050 94967232 NC_060927.1 CM021570.2 98.51 True translocation 3294923 3297128 94967426 94969636 NC_060937.1 CM021570.2 96.88 True translocation 3436396 3437697 94969637 94970936 NC_060946.1 CM021570.2 97.95 True translocation 95081545 95119262 94971741 95009458 NC_060927.1 CM021570.2 99.8 True relocation, inconsistency = -2473042 92646221 92648222 95009459 95011460 NC_060927.1 CM021570.2 99.49 True relocation, inconsistency = 161595 92809818 92816018 95011461 95017661 NC_060927.1 CM021570.2 99.77 True translocation 1473526 1474596 95017858 95018935 NC_060939.1 CM021570.2 96.55 True translocation 95128954 95204737 95018936 95094714 NC_060927.1 CM021570.2 99.78 True translocation 1894677 1896882 95097801 95100011 NC_060937.1 CM021570.2 97.47 True translocation 3436396 3437697 95100012 95101311 NC_060946.1 CM021570.2 97.73 True translocation 95330403 95331622 95101446 95102665 NC_060927.1 CM021570.2 96.64 True translocation 1151326 1152243 95105432 95106349 NC_060937.1 CM021570.2 95.53 True indel: indel (> 5bp) 1152286 1153241 95106350 95107305 NC_060937.1 CM021570.2 96.65 True translocation 95218313 95233239 95108180 95123107 NC_060927.1 CM021570.2 99.44 True translocation 3048750 3049721 95132129 95133093 NC_060946.1 CM021570.2 95.39 True local misassembly 3053397 3054508 95133392 95134503 NC_060946.1 CM021570.2 95.89 True translocation 95244575 95249535 95134504 95139470 NC_060927.1 CM021570.2 96.87 True fake: not a misassembly (possible transposable element) 1248756 1249456 95140242 95140942 NC_060945.1 CM021570.2 95.58 True fake: not a misassembly (possible transposable element) 95251058 95251788 95141124 95141853 NC_060927.1 CM021570.2 98.91 True local misassembly 95253108 95348745 95143178 95238812 NC_060927.1 CM021570.2 99.73 True translocation 1496351 1497020 95239687 95240355 NC_060939.1 CM021570.2 96.87 True translocation 95338731 95339661 95246282 95247210 NC_060927.1 CM021570.2 96.56 True relocation, inconsistency = 14689 95356758 95357284 95249618 95250145 NC_060927.1 CM021570.2 98.48 True local misassembly 95360053 95504649 95250146 95394942 NC_060927.1 CM021570.2 99.27 True translocation 5102551 5106034 95394943 95398401 NC_060937.1 CM021570.2 96.19 True translocation 7818917 7819579 95402504 95401842 NC_060946.1 CM021570.2 97.89 True translocation 95455582 95456266 95403437 95404121 NC_060927.1 CM021570.2 99.85 True indel: indel (> 5bp) 95456609 95458966 95404499 95406856 NC_060927.1 CM021570.2 99.62 True indel: indel (<= 5bp) 95458972 95459824 95406857 95407709 NC_060927.1 CM021570.2 99.77 True indel: indel (<= 5bp) 95459924 95461383 95407814 95409273 NC_060927.1 CM021570.2 99.86 True indel: indel (<= 5bp) 95461389 95462780 95409274 95410665 NC_060927.1 CM021570.2 99.64 True indel: indel (<= 5bp) 95462882 95463460 95410762 95411340 NC_060927.1 CM021570.2 99.48 True indel: indel (> 5bp) 95463570 95465493 95411440 95413363 NC_060927.1 CM021570.2 99.38 True indel: indel (<= 5bp) 95465499 95467980 95413364 95415845 NC_060927.1 CM021570.2 99.8 True indel: indel (> 5bp) 95468249 95469002 95416129 95416882 NC_060927.1 CM021570.2 99.73 True indel: indel (<= 5bp) 95469003 95470157 95416888 95418042 NC_060927.1 CM021570.2 99.74 True indel: indel (> 5bp) 95470183 95471880 95418043 95419740 NC_060927.1 CM021570.2 99.59 True indel: indel (> 5bp) 95471881 95472851 95419756 95420726 NC_060927.1 CM021570.2 99.38 True indel: indel (> 5bp) 95472921 95473424 95420826 95421329 NC_060927.1 CM021570.2 99.21 True indel: indel (> 5bp) 95473425 95474747 95421340 95422662 NC_060927.1 CM021570.2 99.85 True local misassembly 95475613 95476421 95423518 95424326 NC_060927.1 CM021570.2 99.63 True translocation 1613245 1914128 95424577 95724853 NC_060939.1 CM021570.2 98.37 True translocation 92532350 92537611 95724854 95730113 NC_060927.1 CM021570.2 99.51 True relocation, inconsistency = -420043 92119314 92126208 95731859 95738754 NC_060927.1 CM021570.2 99.48 True relocation, inconsistency = 388243 92514452 92515182 95738755 95739485 NC_060927.1 CM021570.2 99.37 True relocation, inconsistency = -437560 92080545 92084438 95742408 95746305 NC_060927.1 CM021570.2 99.42 True relocation, inconsistency = 128569 92213008 92218854 95746306 95752152 NC_060927.1 CM021570.2 99.6 True relocation, inconsistency = 182130 92400985 92433674 95752153 95784842 NC_060927.1 CM021570.2 99.71 True relocation, inconsistency = 455263 92888938 92896496 95784843 95792400 NC_060927.1 CM021570.2 99.59 True relocation, inconsistency = -545907 92357620 92363125 95799431 95804936 NC_060927.1 CM021570.2 99.69 True relocation, inconsistency = 194902 92559536 92571738 95806445 95818639 NC_060927.1 CM021570.2 99.5 True relocation, inconsistency = 3431131 96002870 96006961 95818640 95822723 NC_060927.1 CM021570.2 99.47 True relocation, inconsistency = -3130646 92876316 92889136 95822724 95835540 NC_060927.1 CM021570.2 99.3 True relocation, inconsistency = -837197 92051940 92063497 95835541 95847101 NC_060927.1 CM021570.2 99.35 True relocation, inconsistency = 3976524 96040731 96046727 95847811 95853807 NC_060927.1 CM021570.2 99.65 True relocation, inconsistency = -8673 96038823 96112239 95854576 95927994 NC_060927.1 CM021570.2 99.82 True relocation, inconsistency = -86730 96025510 96036077 95927995 95938562 NC_060927.1 CM021570.2 99.62 True relocation, inconsistency = -3139318 92896760 92898668 95938563 95940471 NC_060927.1 CM021570.2 99.55 True local misassembly 92892887 92900701 95940472 95948286 NC_060927.1 CM021570.2 99.53 True relocation, inconsistency = -529413 92371289 92375912 95948287 95952910 NC_060927.1 CM021570.2 99.55 True relocation, inconsistency = 3700532 96080201 96084846 95956667 95961310 NC_060927.1 CM021570.2 99.19 True relocation, inconsistency = 60709 96145556 96155594 95961311 95971348 NC_060927.1 CM021570.2 99.41 True relocation, inconsistency = -34682 96120913 96126124 95971349 95976559 NC_060927.1 CM021570.2 99.54 True relocation, inconsistency = 75151 96201276 96203013 95976560 95978297 NC_060927.1 CM021570.2 99.07 True local misassembly 96208798 96222475 95978298 95991964 NC_060927.1 CM021570.2 99.13 True relocation, inconsistency = -98289 96125925 96132238 95993703 96000016 NC_060927.1 CM021570.2 99.51 True relocation, inconsistency = -106967 96025272 96035155 96000017 96009900 NC_060927.1 CM021570.2 99.52 True relocation, inconsistency = -17346 96017863 96026490 96009954 96018577 NC_060927.1 CM021570.2 99.34 True relocation, inconsistency = 190799 96217337 96223659 96018625 96024943 NC_060927.1 CM021570.2 95.94 True local misassembly 96229778 96379558 96024944 96174344 NC_060927.1 CM021570.2 97.47 True local misassembly 96377797 96383527 96175988 96181714 NC_060927.1 CM021570.2 98.76 True relocation, inconsistency = -7137 96376447 96380637 96181771 96185961 NC_060927.1 CM021570.2 99.62 True relocation, inconsistency = -47597 96333117 96414943 96186038 96267867 NC_060927.1 CM021570.2 99.22 True fake: not a misassembly (possible transposable element) 96226766 96227694 96267868 96268796 NC_060927.1 CM021570.2 98.43 True fake: not a misassembly (possible transposable element) 96414942 97494212 96272544 97351794 NC_060927.1 CM021570.2 99.87 True local misassembly 97491607 97494105 97351795 97354293 NC_060927.1 CM021570.2 99.85 True local misassembly 97491500 98449202 97354294 98312230 NC_060927.1 CM021570.2 99.77 True local misassembly 98449440 98484365 98314579 98349494 NC_060927.1 CM021570.2 99.79 True local misassembly 98485156 100899953 98350428 100763528 NC_060927.1 CM021570.2 99.68 True local misassembly 100899973 101544994 100764332 101406264 NC_060927.1 CM021570.2 98.77 True indel: indel (> 5bp) 101545497 104757444 101406700 104608326 NC_060927.1 CM021570.2 99.45 True local misassembly 104758430 106809865 104608327 106663677 NC_060927.1 CM021570.2 99.67 True indel: indel (> 5bp) 106810019 114885690 106663807 114738155 NC_060927.1 CM021570.2 99.82 True translocation 99195648 99197279 114739786 114738156 NC_060933.1 CM021570.2 96.68 True translocation 114885491 116968784 114747456 116830532 NC_060927.1 CM021570.2 99.82 True indel: indel (> 5bp) 116968874 121285918 116830614 121146741 NC_060927.1 CM021570.2 99.85 True indel: indel (<= 5bp) 121285955 123912923 121146782 123773268 NC_060927.1 CM021570.2 99.83 True indel: stretch of mismatches 123913343 129787872 123773688 129648643 NC_060927.1 CM021570.2 99.8 True indel: indel (<= 5bp) 129788245 132682722 129649015 132543146 NC_060927.1 CM021570.2 99.82 True local misassembly 132682795 133243266 132543763 133104138 NC_060927.1 CM021570.2 99.74 True local misassembly 133243504 135693500 133104797 135554739 NC_060927.1 CM021570.2 99.84 True indel: stretch of mismatches 135693501 136170718 135554740 136031906 NC_060927.1 CM021570.2 99.93 True indel: indel (> 5bp) 136170909 149390576 136032084 149249980 NC_060927.1 CM021570.2 99.69 True indel: indel (<= 5bp) 149390758 149422702 149250164 149282127 NC_060927.1 CM021570.2 99.23 True local misassembly 149427911 150644096 149282439 150498671 NC_060927.1 CM021570.2 99.88 True local misassembly 150644676 150645287 150498672 150499283 NC_060927.1 CM021570.2 99.51 True translocation 123812302 123812877 150499947 150500522 NC_060933.1 CM021570.2 98.61 True translocation 196052848 196053513 150501315 150501980 NC_060926.1 CM021570.2 99.25 True translocation 150645271 151131957 150502000 150988784 NC_060927.1 CM021570.2 99.8 True indel: indel (> 5bp) 151132082 151512436 150988830 151373379 NC_060927.1 CM021570.2 98.69 True indel: indel (<= 5bp) 151512633 154588345 151373581 154449803 NC_060927.1 CM021570.2 99.81 True local misassembly 154588606 156053566 154449886 155915977 NC_060927.1 CM021570.2 99.67 True indel: indel (<= 5bp) 156053615 163719247 155916024 163584273 NC_060927.1 CM021570.2 99.76 True indel: indel (> 5bp) 163719365 165093142 163584474 164957682 NC_060927.1 CM021570.2 99.73 True indel: indel (> 5bp) 165093607 167875966 164958089 167727176 NC_060927.1 CM021570.2 99.2 True indel: indel (> 5bp) 167876038 174549025 167727232 174399559 NC_060927.1 CM021570.2 99.82 True indel: indel (> 5bp) 174549108 178976384 174399680 178820768 NC_060927.1 CM021570.2 99.54 True local misassembly 178977235 181560831 178821552 181393854 NC_060927.1 CM021570.2 99.37 True local misassembly 181563948 184276415 181396456 184110374 NC_060927.1 CM021570.2 99.73 True local misassembly 184279622 185978272 184110375 185809077 NC_060927.1 CM021570.2 99.79 True local misassembly 185978619 187359365 185809522 187190237 NC_060927.1 CM021570.2 99.72 True local misassembly 187359485 187568219 187190485 187398707 NC_060927.1 CM021570.2 99.22 True local misassembly 187570378 191454177 187399111 191279229 NC_060927.1 CM021570.2 99.54 True fake: not a misassembly (possible transposable element) 190708595 190710216 191279230 191280835 NC_060927.1 CM021570.2 96.72 True fake: not a misassembly (possible transposable element) 191454254 191709639 191280836 191536135 NC_060927.1 CM021570.2 99.81 True indel: indel (> 5bp) 191709652 197022645 191536223 196840500 NC_060927.1 CM021570.2 99.31 True indel: indel (> 5bp) 197022830 197807288 196840751 197624758 NC_060927.1 CM021570.2 99.47 True local misassembly 197808498 198171292 197625449 197988285 NC_060927.1 CM021570.2 99.81 True indel: indel (> 5bp) 198171512 198176388 197988493 197993471 NC_060927.1 CM021570.2 97.05 True local misassembly 198189935 198190559 198010168 198010792 NC_060927.1 CM021570.2 97.6 True indel: indel (> 5bp) 198190598 198192181 198010793 198012376 NC_060927.1 CM021570.2 98.17 True local misassembly 198194509 198196248 198016072 198017811 NC_060927.1 CM021570.2 97.41 True local misassembly 198197123 198198435 198018983 198020295 NC_060927.1 CM021570.2 97.72 True indel: indel (<= 5bp) 198198441 198199264 198020296 198021119 NC_060927.1 CM021570.2 98.18 True local misassembly 198205494 198206886 198029686 198031078 NC_060927.1 CM021570.2 98.42 True indel: indel (> 5bp) 198206963 198207982 198031079 198032098 NC_060927.1 CM021570.2 97.55 True local misassembly 198211478 198353780 198033952 198176249 NC_060927.1 CM021570.2 99.21 True indel: indel (> 5bp) 198354049 198598184 198176471 198420657 NC_060927.1 CM021570.2 99.6 True indel: indel (> 5bp) 198598368 198652022 198420853 198474551 NC_060927.1 CM021570.2 99.6 True local misassembly 198652943 199530674 198475614 199354484 NC_060927.1 CM021570.2 99.37 True local misassembly 199537076 199675015 199356432 199493956 NC_060927.1 CM021570.2 99.53 True indel: indel (> 5bp) 199675235 199758768 199494167 199577685 NC_060927.1 CM021570.2 99.11 True local misassembly 199759809 201102610 199578965 200926958 NC_060927.1 CM021570.2 99.4 True CONTIG CM021570.2 200930272 misassembled 3238 1192566 3244 1193922 NC_060928.1 CM021571.2 99.51 True indel: indel (> 5bp) 1192639 1294269 1193923 1296300 NC_060928.1 CM021571.2 98.31 True local misassembly 1294250 1759533 1296428 1757247 NC_060928.1 CM021571.2 96.13 True local misassembly 1760040 4120987 1757772 4118847 NC_060928.1 CM021571.2 99.72 True translocation 67972925 67975388 4118848 4121312 NC_060935.1 CM021571.2 95.21 True local misassembly 67976366 67980317 4122600 4126552 NC_060935.1 CM021571.2 95.35 True translocation 9506960 9507463 4128344 4127841 NC_060928.1 CM021571.2 96.23 True indel: indel (> 5bp) 9506329 9506903 4128919 4128345 NC_060928.1 CM021571.2 96.0 True indel: indel (<= 5bp) 9503906 9506286 4131340 4128960 NC_060928.1 CM021571.2 95.97 True indel: indel (<= 5bp) 9502811 9503905 4132437 4131343 NC_060928.1 CM021571.2 96.07 True indel: stretch of mismatches 9501865 9502366 4133383 4132882 NC_060928.1 CM021571.2 96.22 True relocation, inconsistency = 563591 8933224 8938125 4138498 4133532 NC_060928.1 CM021571.2 95.31 True fake: not a misassembly (possible transposable element) 67993014 67994606 4138771 4140363 NC_060935.1 CM021571.2 97.36 True fake: not a misassembly (possible transposable element) 8929662 8930954 4142060 4140768 NC_060928.1 CM021571.2 97.29 True indel: indel (> 5bp) 8928658 8929307 4143046 4142397 NC_060928.1 CM021571.2 97.38 True local misassembly 8927127 8928081 4144576 4143622 NC_060928.1 CM021571.2 97.8 True relocation, inconsistency = 3247944 4119889 5675825 4147934 5704503 NC_060928.1 CM021571.2 99.7 True local misassembly 5677345 6371624 5706005 6399249 NC_060928.1 CM021571.2 99.3 True local misassembly 6372070 6555485 6399276 6582673 NC_060928.1 CM021571.2 99.8 True indel: indel (> 5bp) 6555580 7413607 6582718 7445842 NC_060928.1 CM021571.2 99.18 True indel: indel (> 5bp) 7413696 7420698 7445960 7452993 NC_060928.1 CM021571.2 98.84 True local misassembly 7421306 7696146 7453596 7728069 NC_060928.1 CM021571.2 99.45 True local misassembly 7696825 8069699 7728699 8100544 NC_060928.1 CM021571.2 99.33 True indel: indel (> 5bp) 8069870 8588954 8100639 8619556 NC_060928.1 CM021571.2 99.69 True indel: indel (<= 5bp) 8589096 8622749 8619695 8653381 NC_060928.1 CM021571.2 99.19 True local misassembly 8617104 8622746 8653382 8659008 NC_060928.1 CM021571.2 99.1 True relocation, inconsistency = -22552 8600195 8605828 8659009 8664623 NC_060928.1 CM021571.2 98.75 True local misassembly 8600195 9146982 8664624 9211647 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = -23747 9123236 10134111 9211648 10222219 NC_060928.1 CM021571.2 99.75 True indel: indel (> 5bp) 10134374 11541582 10222431 11629463 NC_060928.1 CM021571.2 99.76 True local misassembly 11541937 12087314 11629625 12175078 NC_060928.1 CM021571.2 99.81 True local misassembly 12087802 12644776 12175898 12732994 NC_060928.1 CM021571.2 99.84 True local misassembly 12645410 12692997 12733423 12780988 NC_060928.1 CM021571.2 99.49 True local misassembly 12694612 13792728 12782483 13882618 NC_060928.1 CM021571.2 99.63 True indel: indel (> 5bp) 13792837 14816701 13882712 14906285 NC_060928.1 CM021571.2 99.84 True local misassembly 14816817 15773320 14906286 15863107 NC_060928.1 CM021571.2 99.67 True local misassembly 15773470 15828784 15863355 15918668 NC_060928.1 CM021571.2 99.8 True indel: stretch of mismatches 15828785 15849431 15918669 15939333 NC_060928.1 CM021571.2 99.75 True indel: indel (> 5bp) 15849685 16721283 15939559 16811033 NC_060928.1 CM021571.2 99.81 True indel: indel (> 5bp) 16721524 19502555 16811235 19590945 NC_060928.1 CM021571.2 99.78 True local misassembly 19503116 20454054 19591558 20543345 NC_060928.1 CM021571.2 99.69 True local misassembly 20454268 23599019 20543661 23688903 NC_060928.1 CM021571.2 99.82 True indel: stretch of mismatches 23599020 26191574 23688904 26280470 NC_060928.1 CM021571.2 99.75 True local misassembly 26193912 26195088 26281222 26282398 NC_060928.1 CM021571.2 99.83 True indel: indel (> 5bp) 26195229 26196893 26282528 26284192 NC_060928.1 CM021571.2 99.88 True indel: indel (<= 5bp) 26196899 26198749 26284193 26286043 NC_060928.1 CM021571.2 99.78 True local misassembly 26199768 26432834 26287050 26519952 NC_060928.1 CM021571.2 99.68 True indel: indel (<= 5bp) 26432908 28973446 26520028 29058047 NC_060928.1 CM021571.2 99.75 True indel: indel (> 5bp) 28973487 31806459 29058052 31891130 NC_060928.1 CM021571.2 99.82 True local misassembly 31807649 32804807 31892516 32889717 NC_060928.1 CM021571.2 99.66 True indel: indel (<= 5bp) 32804931 32807085 32889846 32892000 NC_060928.1 CM021571.2 99.63 True local misassembly 32808386 40620664 32892854 40699445 NC_060928.1 CM021571.2 99.73 True indel: indel (> 5bp) 40620942 42740946 40699791 42827095 NC_060928.1 CM021571.2 99.5 True indel: indel (> 5bp) 42740970 44991522 42827151 45077168 NC_060928.1 CM021571.2 99.73 True local misassembly 44995076 49061889 45080049 49144995 NC_060928.1 CM021571.2 99.65 True local misassembly 49066534 49067276 49148817 49149559 NC_060928.1 CM021571.2 99.73 True local misassembly 49068040 49068985 49152229 49153174 NC_060928.1 CM021571.2 99.68 True local misassembly 49069540 49070142 49153739 49154341 NC_060928.1 CM021571.2 99.67 True local misassembly 49075434 49076162 49160577 49161305 NC_060928.1 CM021571.2 99.59 True local misassembly 49078179 49079043 49163397 49164261 NC_060928.1 CM021571.2 99.54 True indel: stretch of mismatches 49079404 49079911 49164622 49165129 NC_060928.1 CM021571.2 99.61 True indel: stretch of mismatches 49080411 49081020 49165629 49166238 NC_060928.1 CM021571.2 99.18 True indel: indel (<= 5bp) 49081026 49082640 49166239 49167853 NC_060928.1 CM021571.2 99.32 True local misassembly 49084325 49084912 49169443 49170030 NC_060928.1 CM021571.2 99.15 True local misassembly 49086254 49086753 49171383 49171882 NC_060928.1 CM021571.2 99.8 True relocation, inconsistency = 10718 49108461 49238873 49182872 49313322 NC_060928.1 CM021571.2 99.45 True indel: stretch of mismatches 49239029 49245205 49313478 49319655 NC_060928.1 CM021571.2 98.56 True indel: stretch of mismatches 49245399 49270812 49319849 49345331 NC_060928.1 CM021571.2 99.02 True indel: indel (<= 5bp) 49271051 49288854 49345573 49363385 NC_060928.1 CM021571.2 96.85 True indel: stretch of mismatches 49289309 49528975 49363840 49603584 NC_060928.1 CM021571.2 99.7 True fake: not a misassembly (possible transposable element) 49541514 49545570 49603585 49607657 NC_060928.1 CM021571.2 97.86 True fake: not a misassembly (possible transposable element) 49533039 49545570 49607658 49620175 NC_060928.1 CM021571.2 98.36 True relocation, inconsistency = -12532 49533039 49545584 49620176 49632737 NC_060928.1 CM021571.2 98.48 True relocation, inconsistency = -12532 49533053 49545570 49632738 49645246 NC_060928.1 CM021571.2 98.31 True relocation, inconsistency = -12532 49533039 49545570 49645247 49657779 NC_060928.1 CM021571.2 98.46 True relocation, inconsistency = -12532 49533039 49545584 49657780 49670331 NC_060928.1 CM021571.2 98.28 True relocation, inconsistency = -12532 49533053 49545584 49670332 49682854 NC_060928.1 CM021571.2 98.63 True relocation, inconsistency = -12532 49533053 49538857 49682855 49688659 NC_060928.1 CM021571.2 98.63 True relocation, inconsistency = -12498 49526360 49545584 49688660 49707900 NC_060928.1 CM021571.2 98.79 True relocation, inconsistency = -12532 49533053 49543026 49707901 49717864 NC_060928.1 CM021571.2 98.71 True relocation, inconsistency = -7561 49535466 49543009 49717865 49725418 NC_060928.1 CM021571.2 99.19 True relocation, inconsistency = -7561 49535449 49651207 49725419 49840829 NC_060928.1 CM021571.2 98.61 True relocation, inconsistency = 7327 49658535 49660195 49840830 49842489 NC_060928.1 CM021571.2 98.39 True fake: not a misassembly (possible transposable element) 49674131 49674636 49842911 49843416 NC_060928.1 CM021571.2 98.02 True fake: not a misassembly (possible transposable element) 49668545 49669110 49845686 49846255 NC_060928.1 CM021571.2 97.37 True relocation, inconsistency = -12183 49662316 49665201 49851644 49854530 NC_060928.1 CM021571.2 98.3 True local misassembly 49677337 49680390 49866464 49869527 NC_060928.1 CM021571.2 96.05 True local misassembly 49686063 49687184 49875172 49876300 NC_060928.1 CM021571.2 96.1 True local misassembly 49691286 49692208 49880314 49881236 NC_060928.1 CM021571.2 96.32 True local misassembly 49693044 49693729 49882073 49882758 NC_060928.1 CM021571.2 97.23 True local misassembly 49694338 49698756 49883374 49887798 NC_060928.1 CM021571.2 95.26 True indel: indel (<= 5bp) 49699217 49700141 49888262 49889186 NC_060928.1 CM021571.2 96.97 True local misassembly 49701554 49702534 49890607 49891587 NC_060928.1 CM021571.2 97.96 True indel: indel (<= 5bp) 49702535 49703479 49891590 49892534 NC_060928.1 CM021571.2 96.61 True indel: indel (> 5bp) 49703522 49704100 49892535 49893113 NC_060928.1 CM021571.2 95.68 True indel: indel (> 5bp) 49704398 49705288 49893485 49894375 NC_060928.1 CM021571.2 98.88 True local misassembly 49706243 49742255 49895330 49931335 NC_060928.1 CM021571.2 98.74 True relocation, inconsistency = 5006733 54748989 54755814 49931336 49938159 NC_060928.1 CM021571.2 99.12 True relocation, inconsistency = 364898 55121065 55122516 49938512 49939963 NC_060928.1 CM021571.2 96.35 True relocation, inconsistency = -5371627 49751222 49754129 49940296 49943203 NC_060928.1 CM021571.2 99.79 True indel: indel (<= 5bp) 49754483 49782955 49943559 49972029 NC_060928.1 CM021571.2 99.83 True relocation, inconsistency = 5335228 55118184 55120207 49972030 49974049 NC_060928.1 CM021571.2 97.71 True relocation, inconsistency = -2997205 52123277 52124862 49974324 49975904 NC_060928.1 CM021571.2 97.41 True fake: not a misassembly (possible transposable element) 55045237 55047262 49976113 49978134 NC_060928.1 CM021571.2 98.17 True fake: not a misassembly (possible transposable element) 52128049 52129629 49978399 49979974 NC_060928.1 CM021571.2 97.6 True relocation, inconsistency = 2919990 55049828 55051838 49980183 49982189 NC_060928.1 CM021571.2 98.16 True relocation, inconsistency = -5258693 49793508 49804511 49982552 49993559 NC_060928.1 CM021571.2 99.8 True relocation, inconsistency = 527274 50331786 50338288 49993560 50000061 NC_060928.1 CM021571.2 99.42 True relocation, inconsistency = 4512626 54850915 54856450 50000062 50005600 NC_060928.1 CM021571.2 99.16 True relocation, inconsistency = -4813840 50042611 50046416 50005601 50009406 NC_060928.1 CM021571.2 99.22 True relocation, inconsistency = -226057 49820360 49834111 50009407 50023156 NC_060928.1 CM021571.2 99.55 True relocation, inconsistency = 210748 50044860 50050932 50023157 50029229 NC_060928.1 CM021571.2 99.2 True relocation, inconsistency = -210748 49840185 49848615 50029230 50037660 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 49848616 49852307 50037661 50041352 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 49852308 49862045 50041353 50051090 NC_060928.1 CM021571.2 99.84 True relocation, inconsistency = 5153932 55016401 55018255 50051514 50053368 NC_060928.1 CM021571.2 98.53 True relocation, inconsistency = -4975672 50042584 50048366 50053369 50059151 NC_060928.1 CM021571.2 99.41 True relocation, inconsistency = -9015 50039352 50048147 50059152 50067947 NC_060928.1 CM021571.2 97.7 True relocation, inconsistency = -169245 49878903 49903425 50067948 50092465 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = 109715 50013141 50016047 50092466 50095372 NC_060928.1 CM021571.2 99.44 True relocation, inconsistency = 26536 50042584 50048637 50095373 50101426 NC_060928.1 CM021571.2 99.42 True relocation, inconsistency = 5060358 55109640 55113730 50102071 50106160 NC_060928.1 CM021571.2 98.41 True relocation, inconsistency = -98291 55015440 55018772 50106161 50109493 NC_060928.1 CM021571.2 97.98 True relocation, inconsistency = 123972 55142937 55144555 50109686 50111304 NC_060928.1 CM021571.2 97.71 True relocation, inconsistency = -5105429 50039127 50040472 50111305 50112649 NC_060928.1 CM021571.2 99.35 True local misassembly 50037241 50049423 50112650 50124826 NC_060928.1 CM021571.2 99.39 True relocation, inconsistency = 4695461 54744885 54759898 50124827 50139831 NC_060928.1 CM021571.2 99.01 True local misassembly 54753436 54756710 50139832 50143105 NC_060928.1 CM021571.2 99.03 True relocation, inconsistency = -4715704 50041007 50043686 50143106 50145783 NC_060928.1 CM021571.2 99.13 True local misassembly 50040455 50050989 50145784 50156312 NC_060928.1 CM021571.2 99.14 True local misassembly 50044526 50046947 50156313 50158732 NC_060928.1 CM021571.2 99.12 True local misassembly 50040484 50049318 50158733 50167561 NC_060928.1 CM021571.2 99.15 True relocation, inconsistency = 4720635 54770251 54776471 50167859 50174069 NC_060928.1 CM021571.2 98.68 True relocation, inconsistency = -4734925 50041903 50046918 50174426 50179439 NC_060928.1 CM021571.2 98.97 True local misassembly 50040455 50046918 50179440 50185899 NC_060928.1 CM021571.2 99.02 True local misassembly 50040455 50050320 50185900 50195763 NC_060928.1 CM021571.2 99.2 True relocation, inconsistency = 4694271 54744592 54750909 50195764 50202255 NC_060928.1 CM021571.2 98.07 True relocation, inconsistency = -4681174 50069736 50143330 50202256 50275853 NC_060928.1 CM021571.2 99.87 True relocation, inconsistency = 4687820 54831512 54833413 50276215 50278116 NC_060928.1 CM021571.2 99.11 True local misassembly 54833584 54836636 50278117 50281169 NC_060928.1 CM021571.2 98.66 True indel: indel (<= 5bp) 54836639 54837309 50281170 50281840 NC_060928.1 CM021571.2 98.96 True relocation, inconsistency = 283425 55121240 55122424 50282346 50283530 NC_060928.1 CM021571.2 97.58 True relocation, inconsistency = -4789586 50332839 50341400 50283531 50292086 NC_060928.1 CM021571.2 99.24 True relocation, inconsistency = 4650206 54991607 54993339 50292087 50293820 NC_060928.1 CM021571.2 96.65 True relocation, inconsistency = -4985103 50010040 50015824 50295624 50301406 NC_060928.1 CM021571.2 99.51 True relocation, inconsistency = 49327 50065152 50071419 50301407 50307674 NC_060928.1 CM021571.2 99.15 True relocation, inconsistency = 103737 50175157 50207221 50307675 50339740 NC_060928.1 CM021571.2 99.81 True relocation, inconsistency = 127403 50334625 50335575 50339741 50340691 NC_060928.1 CM021571.2 99.2 True relocation, inconsistency = 4662540 54999126 55000115 50341702 50342690 NC_060928.1 CM021571.2 97.84 True relocation, inconsistency = -665282 54334834 54341269 50342691 50349127 NC_060928.1 CM021571.2 99.02 True relocation, inconsistency = -3927012 50414258 50418701 50349128 50353573 NC_060928.1 CM021571.2 99.42 True relocation, inconsistency = 4594347 55013049 55016178 50353574 50356703 NC_060928.1 CM021571.2 97.81 True indel: stretch of mismatches 55016414 55023873 50356939 50364401 NC_060928.1 CM021571.2 97.76 True indel: indel (<= 5bp) 55024079 55025906 50364608 50366435 NC_060928.1 CM021571.2 98.38 True relocation, inconsistency = -4696904 50329003 50338288 50366436 50375720 NC_060928.1 CM021571.2 99.46 True relocation, inconsistency = -295434 50042855 50047124 50375721 50379989 NC_060928.1 CM021571.2 99.43 True relocation, inconsistency = 28921 50077223 50080752 50381167 50384696 NC_060928.1 CM021571.2 99.41 True relocation, inconsistency = 210042 50293228 50299132 50387130 50393034 NC_060928.1 CM021571.2 99.54 True relocation, inconsistency = 4713916 55013049 55015987 50393035 50395973 NC_060928.1 CM021571.2 95.44 True relocation, inconsistency = -4915971 50101568 50102197 50397525 50398154 NC_060928.1 CM021571.2 99.32 True relocation, inconsistency = 4723527 54825725 54850285 50398155 50422391 NC_060928.1 CM021571.2 97.82 True relocation, inconsistency = -97629 54752657 54757377 50422392 50427117 NC_060928.1 CM021571.2 99.14 True relocation, inconsistency = -4681173 50076205 50087246 50427118 50438157 NC_060928.1 CM021571.2 99.0 True relocation, inconsistency = 4658550 54745797 54750053 50438158 50442410 NC_060928.1 CM021571.2 98.52 True relocation, inconsistency = -4440167 50309958 50370831 50442482 50503351 NC_060928.1 CM021571.2 99.94 True relocation, inconsistency = 4446290 54817122 54819532 50503352 50505590 NC_060928.1 CM021571.2 97.1 True local misassembly 54812904 54836776 50505591 50528606 NC_060928.1 CM021571.2 95.43 True relocation, inconsistency = -4440676 50396499 50427210 50529005 50559714 NC_060928.1 CM021571.2 99.76 True relocation, inconsistency = 4327066 54754277 54760614 50559715 50566049 NC_060928.1 CM021571.2 98.88 True relocation, inconsistency = -4298126 50466660 50467511 50570221 50571071 NC_060928.1 CM021571.2 97.54 True relocation, inconsistency = 735164 51209435 51212507 50577831 50580898 NC_060928.1 CM021571.2 97.4 True relocation, inconsistency = -624688 50587820 50588953 50580899 50582033 NC_060928.1 CM021571.2 97.4 True relocation, inconsistency = 606726 51209874 51213049 50596228 50599315 NC_060928.1 CM021571.2 95.31 True relocation, inconsistency = -701640 50514502 50515062 50602408 50602968 NC_060928.1 CM021571.2 97.5 True relocation, inconsistency = -43886 50478762 50479874 50610554 50611666 NC_060928.1 CM021571.2 96.41 True indel: indel (<= 5bp) 50480299 50485601 50612093 50617395 NC_060928.1 CM021571.2 98.66 True indel: indel (> 5bp) 50485739 50487002 50617526 50618747 NC_060928.1 CM021571.2 95.09 True local misassembly 50490494 50491437 50622389 50623332 NC_060928.1 CM021571.2 97.78 True local misassembly 50491564 50492332 50623333 50624101 NC_060928.1 CM021571.2 98.44 True indel: indel (<= 5bp) 50492333 50493536 50624103 50625306 NC_060928.1 CM021571.2 97.92 True indel: indel (<= 5bp) 50493586 50494555 50625355 50626326 NC_060928.1 CM021571.2 96.71 True local misassembly 50496950 50498748 50628672 50630470 NC_060928.1 CM021571.2 97.44 True local misassembly 50499478 50502055 50631194 50633772 NC_060928.1 CM021571.2 96.01 True local misassembly 50502602 50536287 50634327 50668012 NC_060928.1 CM021571.2 99.71 True indel: stretch of mismatches 50536346 50576872 50668071 50708595 NC_060928.1 CM021571.2 99.94 True local misassembly 50580443 50584837 50712129 50716485 NC_060928.1 CM021571.2 96.32 True local misassembly 50587993 50589659 50719557 50721223 NC_060928.1 CM021571.2 97.72 True local misassembly 50590312 50594588 50721884 50726115 NC_060928.1 CM021571.2 96.87 True fake: not a misassembly (possible transposable element) 50653189 50654436 50729662 50730902 NC_060928.1 CM021571.2 96.15 True fake: not a misassembly (possible transposable element) 50600586 50642706 50732060 50774179 NC_060928.1 CM021571.2 99.69 True relocation, inconsistency = 555905 51200413 51201026 50775981 50776594 NC_060928.1 CM021571.2 97.39 True indel: indel (> 5bp) 51201478 51202306 50776961 50777789 NC_060928.1 CM021571.2 96.98 True local misassembly 51202719 51203393 50777790 50778464 NC_060928.1 CM021571.2 97.93 True relocation, inconsistency = 388269 51591973 51592970 50778775 50779772 NC_060928.1 CM021571.2 97.9 True relocation, inconsistency = -1125025 50470310 50471026 50782137 50782853 NC_060928.1 CM021571.2 97.35 True relocation, inconsistency = 367652 50840983 50841572 50785158 50785747 NC_060928.1 CM021571.2 97.46 True relocation, inconsistency = -187194 50656213 50678232 50787582 50809601 NC_060928.1 CM021571.2 99.53 True local misassembly 50680399 50682471 50811852 50813924 NC_060928.1 CM021571.2 98.6 True local misassembly 50684281 50686042 50815745 50817506 NC_060928.1 CM021571.2 98.58 True fake: not a misassembly (possible transposable element) 50976478 50977146 50820715 50821383 NC_060928.1 CM021571.2 96.41 True fake: not a misassembly (possible transposable element) 50691547 50701404 50823057 50832872 NC_060928.1 CM021571.2 98.93 True fake: not a misassembly (possible transposable element) 51762644 51763904 50835021 50836281 NC_060928.1 CM021571.2 97.7 True fake: not a misassembly (possible transposable element) 50707400 50710763 50838723 50842083 NC_060928.1 CM021571.2 97.18 True indel: stretch of mismatches 50711133 50764131 50842453 50895443 NC_060928.1 CM021571.2 99.71 True indel: indel (> 5bp) 50764265 50797803 50895569 50929106 NC_060928.1 CM021571.2 99.65 True fake: not a misassembly (possible transposable element) 50471934 50472927 50929107 50930100 NC_060928.1 CM021571.2 97.69 True fake: not a misassembly (possible transposable element) 50799428 50800463 50930766 50931801 NC_060928.1 CM021571.2 97.39 True local misassembly 50801648 50805349 50933009 50936709 NC_060928.1 CM021571.2 96.19 True local misassembly 50806282 50808015 50937634 50939367 NC_060928.1 CM021571.2 97.52 True fake: not a misassembly (possible transposable element) 50481710 50482878 50939984 50941152 NC_060928.1 CM021571.2 96.32 True fake: not a misassembly (possible transposable element) 50811973 50819996 50943099 50951122 NC_060928.1 CM021571.2 99.69 True indel: indel (> 5bp) 50820080 50836217 50951199 50967336 NC_060928.1 CM021571.2 99.73 True local misassembly 50838314 50841912 50969476 50973074 NC_060928.1 CM021571.2 96.72 True indel: indel (> 5bp) 50842194 50847579 50973398 50978768 NC_060928.1 CM021571.2 97.77 True local misassembly 50848462 50871594 50979976 51002780 NC_060928.1 CM021571.2 98.36 True local misassembly 50874222 50875649 51005326 51006753 NC_060928.1 CM021571.2 97.76 True local misassembly 50876710 50877656 51007801 51008747 NC_060928.1 CM021571.2 95.78 True fake: not a misassembly (possible transposable element) 51037779 51039166 51008940 51010327 NC_060928.1 CM021571.2 96.9 True fake: not a misassembly (possible transposable element) 50882349 50894533 51013454 51025639 NC_060928.1 CM021571.2 98.65 True fake: not a misassembly (possible transposable element) 51405122 51407300 51033913 51036049 NC_060928.1 CM021571.2 96.37 True fake: not a misassembly (possible transposable element) 50912178 50918794 51043227 51049843 NC_060928.1 CM021571.2 99.82 True fake: not a misassembly (possible transposable element) 51048664 51049406 51057929 51058671 NC_060928.1 CM021571.2 96.64 True fake: not a misassembly (possible transposable element) 50928802 50929993 51059828 51061019 NC_060928.1 CM021571.2 96.48 True local misassembly 50933040 50936215 51064035 51067164 NC_060928.1 CM021571.2 96.06 True indel: indel (<= 5bp) 50936444 50937362 51067396 51068314 NC_060928.1 CM021571.2 98.8 True relocation, inconsistency = -135921 50803697 50804347 51070570 51071220 NC_060928.1 CM021571.2 96.47 True local misassembly 50810303 50810931 51076983 51077611 NC_060928.1 CM021571.2 98.09 True local misassembly 50813241 50813868 51080036 51080663 NC_060928.1 CM021571.2 97.45 True local misassembly 50815932 50819095 51082730 51085851 NC_060928.1 CM021571.2 95.71 True local misassembly 50828813 50829398 51090341 51090926 NC_060928.1 CM021571.2 98.63 True relocation, inconsistency = 131111 50969999 50973033 51100416 51103452 NC_060928.1 CM021571.2 97.46 True local misassembly 50973866 50983298 51104285 51113633 NC_060928.1 CM021571.2 96.48 True relocation, inconsistency = 1020345 52008611 52009450 51118601 51119440 NC_060928.1 CM021571.2 96.43 True relocation, inconsistency = -1013247 50998619 50999498 51121856 51122735 NC_060928.1 CM021571.2 98.18 True local misassembly 50996869 51003597 51127070 51133798 NC_060928.1 CM021571.2 99.76 True fake: not a misassembly (possible transposable element) 54923391 54923894 51134877 51135380 NC_060928.1 CM021571.2 97.02 True fake: not a misassembly (possible transposable element) 51009386 51010136 51139279 51140021 NC_060928.1 CM021571.2 96.8 True local misassembly 51015423 51025858 51145214 51155651 NC_060928.1 CM021571.2 99.49 True relocation, inconsistency = 673703 51702012 51703235 51158102 51159326 NC_060928.1 CM021571.2 96.49 True local misassembly 51704696 51706591 51160728 51162581 NC_060928.1 CM021571.2 96.73 True relocation, inconsistency = -673490 51036039 51041651 51165519 51171067 NC_060928.1 CM021571.2 96.46 True local misassembly 51043610 51044313 51172940 51173643 NC_060928.1 CM021571.2 98.44 True local misassembly 51044440 51046789 51173644 51175993 NC_060928.1 CM021571.2 98.3 True local misassembly 51047462 51049137 51176667 51178341 NC_060928.1 CM021571.2 97.91 True relocation, inconsistency = -536752 50514520 50515058 51180476 51181014 NC_060928.1 CM021571.2 97.4 True relocation, inconsistency = 1275192 51802430 51803110 51193194 51193874 NC_060928.1 CM021571.2 97.21 True relocation, inconsistency = -913940 50889562 50891505 51194266 51196167 NC_060928.1 CM021571.2 95.37 True relocation, inconsistency = 731061 51627274 51628362 51200875 51201961 NC_060928.1 CM021571.2 98.26 True relocation, inconsistency = -618747 51019363 51020107 51211709 51212453 NC_060928.1 CM021571.2 96.91 True relocation, inconsistency = 63545 51085458 51090967 51214259 51219725 NC_060928.1 CM021571.2 97.44 True indel: indel (<= 5bp) 51091257 51092389 51220018 51221150 NC_060928.1 CM021571.2 96.65 True indel: indel (> 5bp) 51092432 51093696 51221151 51222415 NC_060928.1 CM021571.2 96.92 True local misassembly 51093823 51096083 51222416 51224676 NC_060928.1 CM021571.2 98.05 True indel: indel (> 5bp) 51096541 51097436 51225050 51225945 NC_060928.1 CM021571.2 97.99 True local misassembly 51098552 51099108 51227041 51227597 NC_060928.1 CM021571.2 99.1 True local misassembly 51101065 51137660 51229545 51266098 NC_060928.1 CM021571.2 99.44 True indel: indel (<= 5bp) 51137787 51138438 51266221 51266872 NC_060928.1 CM021571.2 98.16 True local misassembly 51139369 51140329 51267762 51268720 NC_060928.1 CM021571.2 97.72 True local misassembly 51142064 51144262 51270456 51272654 NC_060928.1 CM021571.2 97.64 True local misassembly 51144711 51146771 51272977 51275037 NC_060928.1 CM021571.2 95.68 True local misassembly 51148722 51159223 51276949 51287405 NC_060928.1 CM021571.2 96.62 True local misassembly 51160608 51162113 51288747 51290254 NC_060928.1 CM021571.2 96.42 True relocation, inconsistency = 940880 52111595 52112116 51298856 51299377 NC_060928.1 CM021571.2 96.74 True indel: indel (> 5bp) 52112159 52112752 51299378 51299971 NC_060928.1 CM021571.2 96.63 True relocation, inconsistency = 2797442 54912485 54913011 51302262 51302788 NC_060928.1 CM021571.2 97.91 True relocation, inconsistency = -4374493 50544978 50546186 51309248 51310456 NC_060928.1 CM021571.2 95.86 True relocation, inconsistency = 636561 51186859 51187482 51314568 51315191 NC_060928.1 CM021571.2 97.76 True local misassembly 51189523 51194945 51317199 51322533 NC_060928.1 CM021571.2 95.98 True local misassembly 51196141 51197429 51323738 51325027 NC_060928.1 CM021571.2 95.89 True indel: indel (> 5bp) 51197929 51202090 51325511 51329646 NC_060928.1 CM021571.2 95.99 True local misassembly 51205974 51209433 51333456 51336878 NC_060928.1 CM021571.2 95.76 True indel: indel (> 5bp) 51209874 51211755 51337243 51339124 NC_060928.1 CM021571.2 97.02 True indel: stretch of mismatches 51211950 51212626 51339319 51339995 NC_060928.1 CM021571.2 96.75 True indel: indel (> 5bp) 51212669 51213310 51339996 51340637 NC_060928.1 CM021571.2 97.35 True local misassembly 51221614 51287209 51348896 51414489 NC_060928.1 CM021571.2 99.85 True local misassembly 51289907 51291530 51417190 51418813 NC_060928.1 CM021571.2 96.24 True local misassembly 51293522 51296623 51420763 51423864 NC_060928.1 CM021571.2 97.36 True relocation, inconsistency = -93826 51206299 51209198 51427366 51430174 NC_060928.1 CM021571.2 95.04 True relocation, inconsistency = 3671626 54882813 54884210 51432163 51433557 NC_060928.1 CM021571.2 96.5 True relocation, inconsistency = -4176761 50708970 50710001 51435078 51436109 NC_060928.1 CM021571.2 98.16 True relocation, inconsistency = 499223 51210572 51211311 51437457 51438196 NC_060928.1 CM021571.2 97.3 True indel: indel (> 5bp) 51211426 51212626 51438265 51439465 NC_060928.1 CM021571.2 97.17 True relocation, inconsistency = 648905 51862609 51863332 51440543 51441266 NC_060928.1 CM021571.2 97.65 True local misassembly 51863333 51864156 51441434 51442257 NC_060928.1 CM021571.2 97.33 True relocation, inconsistency = -548751 51317634 51318673 51444486 51445524 NC_060928.1 CM021571.2 96.63 True fake: not a misassembly (possible transposable element) 50653722 50654317 51445525 51446120 NC_060928.1 CM021571.2 96.63 True fake: not a misassembly (possible transposable element) 51319495 51347566 51446260 51474329 NC_060928.1 CM021571.2 99.83 True local misassembly 51348154 51353158 51474926 51479845 NC_060928.1 CM021571.2 95.83 True local misassembly 51354911 51356279 51481589 51482958 NC_060928.1 CM021571.2 97.96 True relocation, inconsistency = 3549880 54907205 54909233 51484004 51485990 NC_060928.1 CM021571.2 95.76 True relocation, inconsistency = -3541949 51374738 51378384 51493444 51497085 NC_060928.1 CM021571.2 96.87 True relocation, inconsistency = -7851 51374659 51379778 51501211 51506243 NC_060928.1 CM021571.2 95.92 True relocation, inconsistency = -429462 50953071 50953815 51508998 51509742 NC_060928.1 CM021571.2 98.26 True indel: indel (<= 5bp) 50953820 50954955 51509743 51510878 NC_060928.1 CM021571.2 96.48 True relocation, inconsistency = 429613 51388074 51390716 51514384 51516980 NC_060928.1 CM021571.2 95.76 True relocation, inconsistency = 166332 51564222 51565070 51524154 51525002 NC_060928.1 CM021571.2 96.11 True indel: indel (> 5bp) 51565168 51565728 51525054 51525614 NC_060928.1 CM021571.2 97.5 True relocation, inconsistency = -166456 51405429 51408604 51531771 51534899 NC_060928.1 CM021571.2 96.6 True local misassembly 51413200 51413955 51539474 51540229 NC_060928.1 CM021571.2 96.56 True indel: stretch of mismatches 51414333 51508234 51540607 51634508 NC_060928.1 CM021571.2 99.86 True local misassembly 51509025 51511223 51635349 51637549 NC_060928.1 CM021571.2 97.36 True relocation, inconsistency = -312049 51203002 51203808 51641377 51642183 NC_060928.1 CM021571.2 96.78 True indel: indel (> 5bp) 51203885 51204588 51642184 51642887 NC_060928.1 CM021571.2 97.16 True relocation, inconsistency = 176951 51386433 51391839 51647781 51653058 NC_060928.1 CM021571.2 95.38 True relocation, inconsistency = -798900 50593033 50594298 51653152 51654417 NC_060928.1 CM021571.2 95.81 True relocation, inconsistency = 934153 51529311 51532519 51655277 51658444 NC_060928.1 CM021571.2 95.76 True local misassembly 51534001 51538528 51659914 51664411 NC_060928.1 CM021571.2 96.96 True local misassembly 51540009 51543415 51665870 51669233 NC_060928.1 CM021571.2 96.92 True local misassembly 51548123 51627834 51674107 51753816 NC_060928.1 CM021571.2 99.83 True local misassembly 51629016 51632030 51754997 51758011 NC_060928.1 CM021571.2 97.98 True local misassembly 51634082 51635253 51760016 51761187 NC_060928.1 CM021571.2 97.35 True local misassembly 51637802 51674647 51763740 51800576 NC_060928.1 CM021571.2 99.63 True local misassembly 51680810 51681690 51806557 51807437 NC_060928.1 CM021571.2 97.05 True local misassembly 51682936 51683651 51808449 51809164 NC_060928.1 CM021571.2 98.18 True indel: indel (> 5bp) 51683652 51684174 51809249 51809771 NC_060928.1 CM021571.2 98.66 True indel: indel (> 5bp) 51684518 51685854 51810156 51811492 NC_060928.1 CM021571.2 97.68 True fake: not a misassembly (possible transposable element) 50505282 50506139 51812374 51813231 NC_060928.1 CM021571.2 97.44 True fake: not a misassembly (possible transposable element) 51691662 51695757 51817283 51821378 NC_060928.1 CM021571.2 99.51 True indel: stretch of mismatches 51695885 51696863 51821506 51822486 NC_060928.1 CM021571.2 96.33 True relocation, inconsistency = -823747 50875707 50877003 51825077 51826374 NC_060928.1 CM021571.2 96.53 True local misassembly 50878430 50879736 51827801 51829107 NC_060928.1 CM021571.2 97.48 True relocation, inconsistency = 4057907 54938047 54939177 51829511 51830640 NC_060928.1 CM021571.2 96.82 True relocation, inconsistency = -4501186 50438355 50438901 51831004 51831550 NC_060928.1 CM021571.2 97.81 True indel: indel (> 5bp) 50438902 50439675 51831594 51832367 NC_060928.1 CM021571.2 97.39 True relocation, inconsistency = 1194406 51634082 51634998 51832368 51833284 NC_060928.1 CM021571.2 97.49 True fake: not a misassembly (possible transposable element) 54932094 54932748 51833633 51834287 NC_060928.1 CM021571.2 97.56 True fake: not a misassembly (possible transposable element) 51637369 51638597 51835661 51836889 NC_060928.1 CM021571.2 97.15 True indel: stretch of mismatches 51638961 51640730 51837253 51839021 NC_060928.1 CM021571.2 98.59 True local misassembly 51648759 51649410 51846096 51846747 NC_060928.1 CM021571.2 96.01 True relocation, inconsistency = 71897 51722004 51722508 51847444 51847948 NC_060928.1 CM021571.2 98.02 True local misassembly 51724128 51730044 51849482 51855391 NC_060928.1 CM021571.2 98.78 True local misassembly 51731658 51755220 51857006 51880570 NC_060928.1 CM021571.2 99.64 True local misassembly 51762892 51763787 51888140 51889035 NC_060928.1 CM021571.2 98.21 True indel: indel (> 5bp) 51764092 51764976 51889382 51890266 NC_060928.1 CM021571.2 98.53 True indel: indel (<= 5bp) 51764978 51765712 51890267 51891001 NC_060928.1 CM021571.2 97.82 True indel: indel (<= 5bp) 51766165 51766761 51891456 51892052 NC_060928.1 CM021571.2 97.15 True local misassembly 51767688 51782563 51892973 51907847 NC_060928.1 CM021571.2 97.73 True indel: indel (<= 5bp) 51782801 51784299 51908086 51909584 NC_060928.1 CM021571.2 96.73 True local misassembly 51787538 51788602 51912823 51913887 NC_060928.1 CM021571.2 96.62 True indel: indel (<= 5bp) 51789066 51790039 51914352 51915325 NC_060928.1 CM021571.2 97.74 True local misassembly 51790330 51791462 51915346 51916478 NC_060928.1 CM021571.2 95.94 True indel: indel (<= 5bp) 51791896 51793635 51916913 51918651 NC_060928.1 CM021571.2 98.56 True indel: indel (<= 5bp) 51793987 51795362 51919004 51920380 NC_060928.1 CM021571.2 97.97 True local misassembly 51796731 51797764 51921742 51922766 NC_060928.1 CM021571.2 97.39 True indel: indel (<= 5bp) 51798099 51799878 51923103 51924882 NC_060928.1 CM021571.2 96.74 True local misassembly 51801483 51843312 51926437 51968309 NC_060928.1 CM021571.2 99.82 True local misassembly 51844580 51847647 51969586 51972654 NC_060928.1 CM021571.2 95.54 True local misassembly 51848986 51852015 51973995 51977020 NC_060928.1 CM021571.2 96.86 True local misassembly 51852684 51950512 51977688 52075516 NC_060928.1 CM021571.2 99.84 True local misassembly 51952695 52096311 52077734 52221351 NC_060928.1 CM021571.2 99.87 True indel: stretch of mismatches 52096770 52100219 52221810 52225260 NC_060928.1 CM021571.2 97.07 True local misassembly 52106587 52107377 52231768 52232558 NC_060928.1 CM021571.2 96.59 True fake: not a misassembly (possible transposable element) 49703132 49703961 52236141 52236970 NC_060928.1 CM021571.2 96.87 True fake: not a misassembly (possible transposable element) 52116181 52146274 52241300 52271221 NC_060928.1 CM021571.2 97.25 True fake: not a misassembly (possible transposable element) 54786225 54787540 52271222 52272537 NC_060928.1 CM021571.2 99.11 True fake: not a misassembly (possible transposable element) 52147591 52180594 52272538 52305539 NC_060928.1 CM021571.2 99.95 True indel: stretch of mismatches 52180595 52208729 52305540 52333674 NC_060928.1 CM021571.2 99.96 True relocation, inconsistency = -2167269 50041461 50051336 52333675 52343548 NC_060928.1 CM021571.2 99.16 True relocation, inconsistency = -313996 49737341 49738974 52343549 52345182 NC_060928.1 CM021571.2 98.56 True relocation, inconsistency = 2481265 52220616 52251948 52345559 52376889 NC_060928.1 CM021571.2 99.96 True local misassembly 52256627 52268318 52381568 52393259 NC_060928.1 CM021571.2 99.94 True relocation, inconsistency = 2472900 54741219 54760657 52393260 52412009 NC_060928.1 CM021571.2 95.81 True relocation, inconsistency = -2472901 52287757 52319781 52412010 52444034 NC_060928.1 CM021571.2 99.92 True indel: stretch of mismatches 52319782 52324493 52444035 52448746 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52324494 52332743 52448747 52456996 NC_060928.1 CM021571.2 100.0 True relocation, inconsistency = -2265934 50074209 50089273 52464396 52479462 NC_060928.1 CM021571.2 99.38 True relocation, inconsistency = 4739853 54829127 54848318 52479463 52498489 NC_060928.1 CM021571.2 98.37 True relocation, inconsistency = -1612730 53235589 53238838 52498490 52501739 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = -877518 52368560 52374248 52508979 52514667 NC_060928.1 CM021571.2 99.81 True relocation, inconsistency = 12928 52387177 52390408 52514668 52517899 NC_060928.1 CM021571.2 99.81 True local misassembly 52395099 52409800 52519358 52534059 NC_060928.1 CM021571.2 99.93 True relocation, inconsistency = 2415573 54825725 54850285 52534411 52558645 NC_060928.1 CM021571.2 97.79 True relocation, inconsistency = -4801596 50048690 50050906 52558646 52560864 NC_060928.1 CM021571.2 99.32 True relocation, inconsistency = 351052 50401959 50422358 52560865 52581281 NC_060928.1 CM021571.2 99.18 True relocation, inconsistency = -312099 50110260 50114120 52581282 52585142 NC_060928.1 CM021571.2 99.28 True relocation, inconsistency = 2366133 52482363 52488814 52587252 52593703 NC_060928.1 CM021571.2 99.82 True relocation, inconsistency = -90496 52398319 52405561 52593704 52600946 NC_060928.1 CM021571.2 99.87 True relocation, inconsistency = 71104 52476666 52506760 52600947 52631041 NC_060928.1 CM021571.2 100.0 True local misassembly 52521135 52542307 52645416 52666588 NC_060928.1 CM021571.2 100.0 True relocation, inconsistency = 1181309 53734759 53738854 52677731 52681826 NC_060928.1 CM021571.2 99.69 True relocation, inconsistency = -3731822 50007033 50014713 52681827 52689498 NC_060928.1 CM021571.2 99.41 True relocation, inconsistency = 2550514 52565846 52575159 52690117 52699430 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52575160 52637617 52699431 52761888 NC_060928.1 CM021571.2 99.99 True fake: not a misassembly (possible transposable element) 52627922 52629385 52761889 52763352 NC_060928.1 CM021571.2 99.89 True fake: not a misassembly (possible transposable element) 52639082 52655081 52763353 52779352 NC_060928.1 CM021571.2 100.0 True local misassembly 52655894 52681486 52780165 52805757 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52681487 52695718 52805758 52819989 NC_060928.1 CM021571.2 100.0 True local misassembly 52696531 52721207 52820802 52845478 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52721208 52727826 52845479 52852097 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52727827 52730051 52852098 52854322 NC_060928.1 CM021571.2 100.0 True relocation, inconsistency = 128214 52858266 52863796 52854323 52859853 NC_060928.1 CM021571.2 99.91 True relocation, inconsistency = -128214 52735583 52755286 52859854 52879557 NC_060928.1 CM021571.2 100.0 True local misassembly 52756751 52787304 52881022 52911575 NC_060928.1 CM021571.2 99.98 True indel: stretch of mismatches 52787305 52794661 52911576 52918932 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52794662 52810887 52918933 52935158 NC_060928.1 CM021571.2 99.95 True local misassembly 52812352 52868359 52936623 52992630 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 52868360 52885494 52992631 53009765 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52885495 52909529 53009766 53033800 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52909530 52921140 53033801 53045411 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52921141 52944490 53045412 53068761 NC_060928.1 CM021571.2 99.88 True local misassembly 52944994 52959588 53069266 53083858 NC_060928.1 CM021571.2 99.89 True indel: stretch of mismatches 52959589 52970767 53083859 53095037 NC_060928.1 CM021571.2 100.0 True local misassembly 52971453 52985353 53095723 53109623 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 52985354 53014805 53109624 53139075 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53014888 53020252 53139158 53144522 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53020253 53030662 53144523 53154932 NC_060928.1 CM021571.2 99.99 True fake: not a misassembly (possible transposable element) 53064847 53068381 53154933 53158467 NC_060928.1 CM021571.2 99.9 True fake: not a misassembly (possible transposable element) 53034198 53047669 53158468 53171939 NC_060928.1 CM021571.2 99.97 True relocation, inconsistency = 17177 53064847 53069456 53171940 53176549 NC_060928.1 CM021571.2 99.93 True relocation, inconsistency = -27890 53041567 53046228 53176550 53181211 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = 10713 53056942 53068477 53181212 53192747 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53068478 53093068 53192748 53217338 NC_060928.1 CM021571.2 99.99 True fake: not a misassembly (possible transposable element) 53047670 53051300 53217339 53220969 NC_060928.1 CM021571.2 100.0 True fake: not a misassembly (possible transposable element) 53096700 53171073 53220970 53295341 NC_060928.1 CM021571.2 99.99 True local misassembly 53172538 53191748 53296806 53316016 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53191749 53227950 53316017 53352218 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53227951 53241461 53352219 53365729 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53241462 53246145 53365730 53370413 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53246146 53258576 53370414 53382844 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53258577 53305738 53382845 53430006 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53305739 53340180 53430007 53464448 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53340181 53352081 53464449 53476349 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53352082 53380231 53476350 53504499 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53380232 53400522 53504500 53524790 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53400523 53403007 53524791 53527275 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53403008 53415359 53527276 53539627 NC_060928.1 CM021571.2 99.95 True relocation, inconsistency = 1325673 54741808 54743327 53540403 53541920 NC_060928.1 CM021571.2 99.18 True relocation, inconsistency = 17349 54760677 54777202 53541921 53558438 NC_060928.1 CM021571.2 99.35 True relocation, inconsistency = -1343027 53434176 53445843 53558439 53570106 NC_060928.1 CM021571.2 99.94 True fake: not a misassembly (possible transposable element) 53368654 53370190 53570107 53571643 NC_060928.1 CM021571.2 99.8 True fake: not a misassembly (possible transposable element) 53447381 53482232 53571644 53606495 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53482233 53502345 53606496 53626606 NC_060928.1 CM021571.2 99.89 True relocation, inconsistency = -3461607 50040739 50046947 53626607 53632809 NC_060928.1 CM021571.2 99.17 True local misassembly 50040484 50050989 53632810 53643310 NC_060928.1 CM021571.2 99.08 True local misassembly 50044526 50050929 53643311 53649710 NC_060928.1 CM021571.2 99.14 True relocation, inconsistency = 3474535 53526047 53564719 53650293 53688964 NC_060928.1 CM021571.2 99.98 True indel: stretch of mismatches 53564720 53616976 53688965 53741221 NC_060928.1 CM021571.2 99.95 True relocation, inconsistency = -3608537 50008511 50011525 53741293 53744303 NC_060928.1 CM021571.2 99.41 True local misassembly 50008806 50014713 53744304 53750205 NC_060928.1 CM021571.2 99.41 True relocation, inconsistency = 3611258 53626251 53667768 53750485 53792002 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53667769 53674070 53792003 53798304 NC_060928.1 CM021571.2 100.0 True relocation, inconsistency = -3663465 50010610 50014713 53798309 53802410 NC_060928.1 CM021571.2 99.44 True local misassembly 50011994 50013729 53802411 53804146 NC_060928.1 CM021571.2 99.47 True relocation, inconsistency = 3666182 53679912 53699042 53804147 53823275 NC_060928.1 CM021571.2 99.81 True relocation, inconsistency = -3688454 50010589 50011473 53823276 53824160 NC_060928.1 CM021571.2 99.52 True local misassembly 50008754 50011473 53824161 53826878 NC_060928.1 CM021571.2 99.41 True relocation, inconsistency = 4814699 54826173 54839057 53826879 53839417 NC_060928.1 CM021571.2 96.65 True relocation, inconsistency = -4859948 49979110 49983454 53839418 53843759 NC_060928.1 CM021571.2 99.18 True relocation, inconsistency = 59200 50042655 50050989 53843760 53852094 NC_060928.1 CM021571.2 99.09 True relocation, inconsistency = 3676879 53727869 53731074 53852095 53855300 NC_060928.1 CM021571.2 100.0 True indel: stretch of mismatches 53731075 53783269 53855301 53907495 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 53783270 53877692 53907496 54001919 NC_060928.1 CM021571.2 99.98 True local misassembly 53878575 54024619 54002803 54148847 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 54024620 54073324 54148848 54197552 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 54073325 54087366 54197553 54211594 NC_060928.1 CM021571.2 99.99 True fake: not a misassembly (possible transposable element) 54783748 54787580 54212331 54216162 NC_060928.1 CM021571.2 99.05 True fake: not a misassembly (possible transposable element) 54091932 54180480 54216163 54304711 NC_060928.1 CM021571.2 99.95 True local misassembly 54181146 54204030 54305392 54328276 NC_060928.1 CM021571.2 99.99 True indel: stretch of mismatches 54204031 54217011 54328277 54341257 NC_060928.1 CM021571.2 99.82 True relocation, inconsistency = -4181117 50035895 50053541 54341258 54358903 NC_060928.1 CM021571.2 99.46 True relocation, inconsistency = 247637 50301179 50302467 54358904 54360192 NC_060928.1 CM021571.2 99.59 True relocation, inconsistency = -263116 50039352 50048555 54360193 54369396 NC_060928.1 CM021571.2 99.5 True relocation, inconsistency = 4205776 54254332 54255655 54369397 54370717 NC_060928.1 CM021571.2 98.43 True relocation, inconsistency = -9180 54246476 54263484 54370718 54387727 NC_060928.1 CM021571.2 99.82 True relocation, inconsistency = -4220060 50043425 50051869 54387728 54396168 NC_060928.1 CM021571.2 99.32 True relocation, inconsistency = 4964106 55015976 55016798 54396169 54396991 NC_060928.1 CM021571.2 97.67 True relocation, inconsistency = -4980944 50036120 50041902 54397257 54403038 NC_060928.1 CM021571.2 98.89 True local misassembly 50039352 50040472 54403039 54404159 NC_060928.1 CM021571.2 99.3 True relocation, inconsistency = 4700735 54741208 54758693 54404160 54421641 NC_060928.1 CM021571.2 99.14 True relocation, inconsistency = 242439 55001133 55001774 54421642 54422283 NC_060928.1 CM021571.2 99.33 True indel: stretch of mismatches 55002198 55003410 54422707 54423919 NC_060928.1 CM021571.2 98.19 True relocation, inconsistency = -4632601 50371188 50386100 54424298 54439210 NC_060928.1 CM021571.2 99.48 True relocation, inconsistency = 4356820 54742921 54759121 54439211 54455406 NC_060928.1 CM021571.2 99.31 True relocation, inconsistency = -4713662 50045460 50046947 54455407 54456894 NC_060928.1 CM021571.2 99.32 True local misassembly 50040484 50050385 54456895 54466789 NC_060928.1 CM021571.2 99.1 True relocation, inconsistency = 239983 50290384 50294579 54466805 54470998 NC_060928.1 CM021571.2 99.36 True relocation, inconsistency = 4052196 54346776 54397128 54470999 54521348 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = 350426 54747555 54756805 54521349 54530592 NC_060928.1 CM021571.2 99.03 True relocation, inconsistency = -350425 54406381 54492255 54530593 54616460 NC_060928.1 CM021571.2 99.93 True fake: not a misassembly (possible transposable element) 54750982 54752894 54616567 54618477 NC_060928.1 CM021571.2 98.61 True fake: not a misassembly (possible transposable element) 54494274 54693682 54618478 54817884 NC_060928.1 CM021571.2 99.96 True indel: stretch of mismatches 54693683 54711545 54817885 54835738 NC_060928.1 CM021571.2 99.85 True relocation, inconsistency = 37766 54749312 54760002 54835739 54846424 NC_060928.1 CM021571.2 98.97 True relocation, inconsistency = -4718936 50041067 50050385 54846425 54855738 NC_060928.1 CM021571.2 99.19 True relocation, inconsistency = 4710430 54760816 54764542 54855739 54859635 NC_060928.1 CM021571.2 96.46 True relocation, inconsistency = -22622 54741921 54742792 54859636 54860505 NC_060928.1 CM021571.2 99.13 True local misassembly 54739561 54760711 54860506 54881644 NC_060928.1 CM021571.2 99.11 True local misassembly 54754249 54757265 54881645 54884662 NC_060928.1 CM021571.2 99.14 True relocation, inconsistency = -14118 54743148 54746024 54884663 54887537 NC_060928.1 CM021571.2 99.06 True local misassembly 54739561 54746024 54887538 54893993 NC_060928.1 CM021571.2 99.09 True local misassembly 54739561 54760711 54893994 54915129 NC_060928.1 CM021571.2 99.09 True relocation, inconsistency = -16159 54744553 54758951 54915130 54929519 NC_060928.1 CM021571.2 99.02 True relocation, inconsistency = -19391 54739561 54760711 54929520 54950657 NC_060928.1 CM021571.2 99.08 True local misassembly 54754249 54760580 54950658 54956814 NC_060928.1 CM021571.2 98.26 True relocation, inconsistency = -4720126 50040455 50049202 54956815 54965552 NC_060928.1 CM021571.2 99.06 True relocation, inconsistency = 4690358 54739561 54742792 54965553 54968780 NC_060928.1 CM021571.2 99.03 True local misassembly 54739561 54746024 54968781 54975236 NC_060928.1 CM021571.2 99.02 True local misassembly 54739561 54746024 54975237 54981694 NC_060928.1 CM021571.2 99.01 True local misassembly 54739561 54746024 54981695 54988154 NC_060928.1 CM021571.2 99.02 True local misassembly 54739561 54760711 54988155 55009295 NC_060928.1 CM021571.2 99.02 True relocation, inconsistency = 107320 54868032 54870656 55009296 55011920 NC_060928.1 CM021571.2 98.02 True relocation, inconsistency = -3578061 51293975 51296610 55013300 55016019 NC_060928.1 CM021571.2 95.18 True local misassembly 51297820 51300280 55016971 55019432 NC_060928.1 CM021571.2 97.36 True relocation, inconsistency = 3578000 54881165 54884873 55022317 55026021 NC_060928.1 CM021571.2 98.27 True indel: indel (<= 5bp) 54885124 54886015 55026273 55027164 NC_060928.1 CM021571.2 98.65 True local misassembly 54886784 54889021 55027916 55030153 NC_060928.1 CM021571.2 96.51 True indel: indel (> 5bp) 54889503 54891738 55030628 55032861 NC_060928.1 CM021571.2 96.2 True local misassembly 54898365 54903128 55039368 55044174 NC_060928.1 CM021571.2 96.9 True indel: indel (<= 5bp) 54903489 54906412 55044538 55047461 NC_060928.1 CM021571.2 96.14 True local misassembly 54906629 54908400 55047560 55049331 NC_060928.1 CM021571.2 97.86 True local misassembly 54918648 54920266 55059466 55061084 NC_060928.1 CM021571.2 98.64 True indel: indel (<= 5bp) 54920692 54925703 55061509 55066521 NC_060928.1 CM021571.2 97.37 True local misassembly 54929921 54930877 55070711 55071667 NC_060928.1 CM021571.2 97.81 True local misassembly 54932754 54934867 55073564 55075677 NC_060928.1 CM021571.2 97.11 True local misassembly 54936364 54939038 55077174 55079849 NC_060928.1 CM021571.2 95.85 True relocation, inconsistency = -3734992 51207668 51209433 55083471 55085232 NC_060928.1 CM021571.2 97.4 True local misassembly 51211764 51212501 55087782 55088519 NC_060928.1 CM021571.2 97.15 True relocation, inconsistency = 3735293 54948966 54952654 55089691 55093376 NC_060928.1 CM021571.2 97.51 True relocation, inconsistency = -3579016 51374795 51379341 55094533 55098953 NC_060928.1 CM021571.2 95.07 True relocation, inconsistency = -774937 50608339 50609280 55102888 55103829 NC_060928.1 CM021571.2 98.41 True relocation, inconsistency = 4354142 54978964 54979694 55119371 55120101 NC_060928.1 CM021571.2 96.99 True local misassembly 54981018 54983588 55121434 55124005 NC_060928.1 CM021571.2 97.09 True local misassembly 54984694 54985236 55125110 55125652 NC_060928.1 CM021571.2 97.61 True indel: indel (<= 5bp) 54985415 55036657 55125830 55176567 NC_060928.1 CM021571.2 98.15 True relocation, inconsistency = 60371 55097029 55116587 55176568 55196101 NC_060928.1 CM021571.2 98.83 True relocation, inconsistency = -16501 55100087 55148971 55196102 55244773 NC_060928.1 CM021571.2 98.51 True relocation, inconsistency = -53742 55095230 55120773 55244774 55270316 NC_060928.1 CM021571.2 98.92 True relocation, inconsistency = 19388 55140162 55141332 55270317 55271488 NC_060928.1 CM021571.2 98.51 True relocation, inconsistency = -34017 55107466 55119393 55271639 55283566 NC_060928.1 CM021571.2 98.86 True local misassembly 55121763 55124137 55283724 55286097 NC_060928.1 CM021571.2 98.65 True local misassembly 55121763 55129484 55286273 55293995 NC_060928.1 CM021571.2 98.39 True relocation, inconsistency = -20415 55110025 55119230 55294951 55304156 NC_060928.1 CM021571.2 98.74 True relocation, inconsistency = -9525 55110025 55119393 55304476 55313845 NC_060928.1 CM021571.2 98.73 True local misassembly 55121763 55127376 55314003 55319610 NC_060928.1 CM021571.2 97.92 True local misassembly 55125121 55127397 55319906 55322179 NC_060928.1 CM021571.2 97.01 True local misassembly 55130206 55132499 55322437 55324726 NC_060928.1 CM021571.2 97.47 True relocation, inconsistency = -10204 55122553 55124846 55324984 55327273 NC_060928.1 CM021571.2 97.6 True indel: stretch of mismatches 55125104 55127397 55327531 55329820 NC_060928.1 CM021571.2 97.69 True relocation, inconsistency = -57657 55069998 55072334 55330078 55332410 NC_060928.1 CM021571.2 97.18 True fake: not a misassembly (possible transposable element) 55137858 55140194 55332625 55334957 NC_060928.1 CM021571.2 97.69 True fake: not a misassembly (possible transposable element) 55075100 55077436 55335172 55337504 NC_060928.1 CM021571.2 97.39 True indel: stretch of mismatches 55077651 55079987 55337719 55340051 NC_060928.1 CM021571.2 97.43 True indel: stretch of mismatches 55080202 55082538 55340266 55342598 NC_060928.1 CM021571.2 97.48 True relocation, inconsistency = 57656 55140419 55142744 55342823 55345145 NC_060928.1 CM021571.2 97.68 True indel: stretch of mismatches 55142959 55145295 55345360 55347692 NC_060928.1 CM021571.2 97.65 True relocation, inconsistency = -57655 55087855 55090191 55347907 55350239 NC_060928.1 CM021571.2 97.3 True indel: stretch of mismatches 55090406 55092638 55350454 55352682 NC_060928.1 CM021571.2 97.49 True indel: stretch of mismatches 55093012 55095293 55353056 55355333 NC_060928.1 CM021571.2 97.37 True indel: stretch of mismatches 55095508 55097843 55355548 55357880 NC_060928.1 CM021571.2 97.18 True indel: stretch of mismatches 55098058 55100291 55358095 55360325 NC_060928.1 CM021571.2 97.54 True relocation, inconsistency = 57488 55158025 55158849 55360571 55361395 NC_060928.1 CM021571.2 96.73 True relocation, inconsistency = 37623 55196811 55214862 55361734 55379100 NC_060928.1 CM021571.2 95.34 True relocation, inconsistency = 85536 55300399 55520181 55379101 55598873 NC_060928.1 CM021571.2 99.82 True indel: indel (> 5bp) 55520288 56694422 55598966 56772931 NC_060928.1 CM021571.2 99.84 True indel: indel (> 5bp) 56694568 60364591 56772995 60447761 NC_060928.1 CM021571.2 99.64 True local misassembly 60367779 62253797 60447762 62334743 NC_060928.1 CM021571.2 99.72 True local misassembly 62254589 67286726 62335392 67369197 NC_060928.1 CM021571.2 99.73 True indel: indel (> 5bp) 67286814 68271307 67369278 68354793 NC_060928.1 CM021571.2 99.59 True local misassembly 68271838 68290495 68355028 68373683 NC_060928.1 CM021571.2 99.78 True local misassembly 68290971 69374890 68373780 69457950 NC_060928.1 CM021571.2 99.84 True local misassembly 69379165 69385430 69458303 69464536 NC_060928.1 CM021571.2 99.39 True local misassembly 69386936 73671049 69464537 73743647 NC_060928.1 CM021571.2 99.65 True indel: stretch of mismatches 73671379 77904140 73743977 77977307 NC_060928.1 CM021571.2 99.84 True local misassembly 77907689 77908475 77980177 77980967 NC_060928.1 CM021571.2 97.35 True local misassembly 77908818 83277655 77981616 83350410 NC_060928.1 CM021571.2 99.79 True indel: stretch of mismatches 83277656 88734979 83350411 88811442 NC_060928.1 CM021571.2 99.69 True indel: indel (<= 5bp) 88735068 91252482 88811530 91316071 NC_060928.1 CM021571.2 99.19 True inversion 91252483 91264032 91327624 91316072 NC_060928.1 CM021571.2 99.38 True inversion 91264035 92308000 91327625 92371326 NC_060928.1 CM021571.2 99.83 True indel: indel (> 5bp) 92308058 95290271 92371403 95353854 NC_060928.1 CM021571.2 99.84 True indel: indel (> 5bp) 95290577 103494050 95354238 103561487 NC_060928.1 CM021571.2 99.63 True indel: indel (> 5bp) 103494331 105722474 103561732 105790243 NC_060928.1 CM021571.2 99.79 True local misassembly 105724647 109827453 105790244 109894973 NC_060928.1 CM021571.2 99.8 True local misassembly 109827288 110608903 109895591 110669217 NC_060928.1 CM021571.2 97.61 True indel: stretch of mismatches 110608904 110857517 110669218 110917788 NC_060928.1 CM021571.2 99.91 True local misassembly 110858542 111712137 110919306 111773128 NC_060928.1 CM021571.2 99.83 True local misassembly 111712613 113055310 111773401 113123162 NC_060928.1 CM021571.2 99.2 True indel: indel (> 5bp) 113055322 113386039 113123163 113454074 NC_060928.1 CM021571.2 99.72 True local misassembly 113386673 117823247 113454560 117897271 NC_060928.1 CM021571.2 99.59 True local misassembly 117823453 117842126 117897571 117915910 NC_060928.1 CM021571.2 97.8 True indel: indel (> 5bp) 117842171 117889709 117915993 117963280 NC_060928.1 CM021571.2 99.21 True local misassembly 117895751 121371047 117963342 121435384 NC_060928.1 CM021571.2 99.64 True local misassembly 121371716 124669807 121435849 124740100 NC_060928.1 CM021571.2 99.52 True indel: indel (> 5bp) 124669914 126116235 124740233 126186503 NC_060928.1 CM021571.2 99.8 True local misassembly 126116533 127793550 126186644 127863731 NC_060928.1 CM021571.2 99.88 True indel: indel (> 5bp) 127793596 129403288 127863732 129472762 NC_060928.1 CM021571.2 99.79 True indel: indel (> 5bp) 129403319 132449128 129472763 132517701 NC_060928.1 CM021571.2 99.8 True local misassembly 132451453 132525830 132518020 132592424 NC_060928.1 CM021571.2 99.72 True local misassembly 132525908 135031832 132593120 135105770 NC_060928.1 CM021571.2 99.5 True relocation, inconsistency = 9967 135041800 137834266 135105771 137898707 NC_060928.1 CM021571.2 99.65 True local misassembly 137834221 137967577 137898833 138029005 NC_060928.1 CM021571.2 97.38 True indel: indel (> 5bp) 137967823 141151437 138029227 141214390 NC_060928.1 CM021571.2 99.74 True indel: indel (> 5bp) 141151502 147056993 141214435 147120302 NC_060928.1 CM021571.2 99.84 True local misassembly 147057049 149603098 147120558 149663229 NC_060928.1 CM021571.2 99.66 True indel: indel (> 5bp) 149603123 151816650 149663322 151870051 NC_060928.1 CM021571.2 99.5 True local misassembly 151818368 153572819 151872149 153628113 NC_060928.1 CM021571.2 99.71 True local misassembly 153575238 156453453 153631168 156509779 NC_060928.1 CM021571.2 99.79 True local misassembly 156454121 160982173 156510766 161039228 NC_060928.1 CM021571.2 99.81 True local misassembly 160982604 161332381 161039536 161389188 NC_060928.1 CM021571.2 99.76 True local misassembly 161338454 161609055 161389189 161660008 NC_060928.1 CM021571.2 99.66 True indel: indel (> 5bp) 161609167 161705100 161660109 161756040 NC_060928.1 CM021571.2 99.91 True relocation, inconsistency = 17204 161722305 161723932 161757668 161756041 NC_060928.1 CM021571.2 99.94 True relocation, inconsistency = -1241788 161715140 162964061 161757700 163006594 NC_060928.1 CM021571.2 99.89 True indel: indel (<= 5bp) 162964237 163706823 163006768 163749379 NC_060928.1 CM021571.2 99.82 True local misassembly 163707105 164482355 163749788 164519656 NC_060928.1 CM021571.2 98.87 True local misassembly 164482766 165047154 164519800 165086706 NC_060928.1 CM021571.2 99.36 True indel: indel (<= 5bp) 165047297 170113115 165086852 170155949 NC_060928.1 CM021571.2 99.72 True local misassembly 170119153 170857393 170155950 170893460 NC_060928.1 CM021571.2 99.65 True indel: stretch of mismatches 170857442 171514414 170893509 171550189 NC_060928.1 CM021571.2 99.7 True local misassembly 171514972 178964472 171550743 179020880 NC_060928.1 CM021571.2 99.51 True indel: indel (> 5bp) 178964558 179639362 179020939 179695730 NC_060928.1 CM021571.2 99.89 True indel: indel (> 5bp) 179639443 182292559 179695861 182349454 NC_060928.1 CM021571.2 99.78 True local misassembly 182295374 186176362 182350190 186230766 NC_060928.1 CM021571.2 99.7 True local misassembly 186177748 187563678 186231278 187616991 NC_060928.1 CM021571.2 99.75 True local misassembly 187563968 188020288 187616992 188073550 NC_060928.1 CM021571.2 99.64 True indel: indel (> 5bp) 188020278 189512710 188073551 189567445 NC_060928.1 CM021571.2 99.65 True local misassembly 189517449 189772682 189567736 189822994 NC_060928.1 CM021571.2 99.32 True relocation, inconsistency = 11238 189783921 189824402 189822995 189863498 NC_060928.1 CM021571.2 99.2 True indel: stretch of mismatches 189824524 190328037 189863620 190359023 NC_060928.1 CM021571.2 98.13 True local misassembly 190328064 191850521 190359182 191884002 NC_060928.1 CM021571.2 99.33 True local misassembly 191857346 192588816 191884854 192616548 NC_060928.1 CM021571.2 97.82 True local misassembly 192589341 192663542 192616697 192689419 NC_060928.1 CM021571.2 97.45 True indel: indel (> 5bp) 192663503 193003912 192689422 193033033 NC_060928.1 CM021571.2 97.56 True local misassembly 193004770 193007601 193033747 193036578 NC_060928.1 CM021571.2 99.61 True indel: indel (<= 5bp) 193007603 193009909 193036579 193038885 NC_060928.1 CM021571.2 99.91 True local misassembly 193010482 193011129 193038886 193039533 NC_060928.1 CM021571.2 97.84 True local misassembly 193011582 193012126 193039855 193040399 NC_060928.1 CM021571.2 97.25 True local misassembly 193012700 193013471 193041062 193041833 NC_060928.1 CM021571.2 100.0 True indel: indel (> 5bp) 193013472 193015553 193041842 193043923 NC_060928.1 CM021571.2 99.95 True indel: indel (<= 5bp) 193015853 193026763 193044222 193055132 NC_060928.1 CM021571.2 99.76 True indel: indel (<= 5bp) 193026764 193027370 193055134 193055740 NC_060928.1 CM021571.2 100.0 True indel: indel (> 5bp) 193027377 193033733 193055741 193062097 NC_060928.1 CM021571.2 99.95 True indel: indel (<= 5bp) 193033735 193035463 193062098 193063826 NC_060928.1 CM021571.2 99.94 True indel: indel (<= 5bp) 193035465 193036953 193063827 193065315 NC_060928.1 CM021571.2 99.66 True indel: indel (> 5bp) 193037015 193040310 193065316 193068611 NC_060928.1 CM021571.2 99.88 True indel: indel (<= 5bp) 193040311 193041300 193068613 193069602 NC_060928.1 CM021571.2 100.0 True indel: indel (<= 5bp) 193041306 193042009 193069603 193070306 NC_060928.1 CM021571.2 100.0 True indel: indel (> 5bp) 193042010 193045623 193070337 193073950 NC_060928.1 CM021571.2 99.89 True indel: indel (> 5bp) 193046144 193046913 193074413 193075182 NC_060928.1 CM021571.2 99.74 True local misassembly 193048748 193171586 193078566 193201205 NC_060928.1 CM021571.2 99.62 True local misassembly 193172449 193178426 193201936 193207913 NC_060928.1 CM021571.2 99.83 True indel: indel (<= 5bp) 193178427 193180504 193207915 193209992 NC_060928.1 CM021571.2 99.9 True indel: indel (<= 5bp) 193180507 193181725 193209993 193211211 NC_060928.1 CM021571.2 99.84 True local misassembly 193181726 193186657 193211554 193216485 NC_060928.1 CM021571.2 100.0 True indel: indel (<= 5bp) 193186659 193196826 193216486 193226653 NC_060928.1 CM021571.2 99.83 True relocation, inconsistency = -9236 193197387 193199435 193236450 193238498 NC_060928.1 CM021571.2 100.0 True indel: indel (> 5bp) 193199516 193202966 193238499 193241949 NC_060928.1 CM021571.2 99.77 True indel: indel (<= 5bp) 193202967 193206050 193241951 193245034 NC_060928.1 CM021571.2 99.61 True local misassembly 193208526 193210169 193248974 193250617 NC_060928.1 CM021571.2 98.97 True indel: indel (> 5bp) 193210170 193210724 193250657 193251211 NC_060928.1 CM021571.2 97.12 True local misassembly 193211402 193497214 193251967 193535654 NC_060928.1 CM021571.2 98.37 True relocation, inconsistency = 46164 193543379 193573144 193535655 193565416 NC_060928.1 CM021571.2 99.64 True indel: indel (<= 5bp) 193573303 193574945 193565574 193567215 NC_060928.1 CM021571.2 99.88 True CONTIG CM021571.2 193567215 misassembled 2294 156184 2371 156758 NC_060929.1 CM021572.2 98.64 True indel: indel (> 5bp) 156217 687599 156759 684287 NC_060929.1 CM021572.2 96.77 True local misassembly 688045 689807 685791 687553 NC_060929.1 CM021572.2 99.6 True local misassembly 689928 690678 688535 689279 NC_060929.1 CM021572.2 96.43 True indel: indel (> 5bp) 690948 699262 689607 697921 NC_060929.1 CM021572.2 97.51 True local misassembly 700057 701409 704780 706132 NC_060929.1 CM021572.2 98.23 True local misassembly 702289 703286 708076 709073 NC_060929.1 CM021572.2 98.4 True local misassembly 703800 704850 709590 710640 NC_060929.1 CM021572.2 99.05 True indel: indel (<= 5bp) 704852 706029 710641 711818 NC_060929.1 CM021572.2 98.73 True indel: indel (<= 5bp) 706236 707898 712023 713685 NC_060929.1 CM021572.2 97.84 True indel: indel (<= 5bp) 707900 708464 713686 714250 NC_060929.1 CM021572.2 96.99 True local misassembly 710234 710930 715999 716695 NC_060929.1 CM021572.2 96.56 True local misassembly 712721 713304 720979 721562 NC_060929.1 CM021572.2 98.63 True indel: indel (<= 5bp) 713467 714753 721721 723007 NC_060929.1 CM021572.2 99.07 True indel: indel (> 5bp) 715065 718140 723340 726415 NC_060929.1 CM021572.2 99.45 True indel: indel (<= 5bp) 718142 719381 726416 727655 NC_060929.1 CM021572.2 98.06 True indel: indel (> 5bp) 719394 720912 727656 729174 NC_060929.1 CM021572.2 98.09 True relocation, inconsistency = 7100 728066 730130 729228 731290 NC_060929.1 CM021572.2 97.0 True local misassembly 730828 733757 732005 734934 NC_060929.1 CM021572.2 98.26 True local misassembly 734528 735319 734935 735726 NC_060929.1 CM021572.2 98.86 True local misassembly 735997 737332 736400 737735 NC_060929.1 CM021572.2 99.55 True indel: indel (<= 5bp) 737632 738213 738040 738621 NC_060929.1 CM021572.2 99.83 True indel: indel (<= 5bp) 738214 740152 738626 740564 NC_060929.1 CM021572.2 99.43 True local misassembly 740898 742526 741315 742943 NC_060929.1 CM021572.2 97.36 True indel: indel (<= 5bp) 742527 743108 742945 743526 NC_060929.1 CM021572.2 98.11 True indel: indel (<= 5bp) 743109 743779 743531 744201 NC_060929.1 CM021572.2 98.96 True indel: indel (<= 5bp) 743790 744889 744211 745310 NC_060929.1 CM021572.2 98.73 True indel: indel (> 5bp) 744890 747089 745387 747586 NC_060929.1 CM021572.2 99.27 True local misassembly 747454 751493 747767 751806 NC_060929.1 CM021572.2 99.48 True indel: indel (<= 5bp) 751495 754872 751807 755184 NC_060929.1 CM021572.2 99.62 True relocation, inconsistency = 18524 784231 786965 766019 768761 NC_060929.1 CM021572.2 98.47 True relocation, inconsistency = -111256 675787 676556 768839 769608 NC_060929.1 CM021572.2 99.09 True indel: indel (<= 5bp) 676637 679158 769686 772259 NC_060929.1 CM021572.2 95.03 True local misassembly 680636 681311 773421 774096 NC_060929.1 CM021572.2 97.19 True indel: indel (<= 5bp) 681391 682392 774173 775174 NC_060929.1 CM021572.2 96.71 True local misassembly 684135 976572 776843 1068864 NC_060929.1 CM021572.2 99.43 True indel: indel (> 5bp) 976841 1097834 1069053 1188718 NC_060929.1 CM021572.2 98.47 True local misassembly 1099657 1558787 1190415 1653564 NC_060929.1 CM021572.2 98.2 True local misassembly 1560799 1841100 1654788 1934016 NC_060929.1 CM021572.2 98.36 True indel: indel (<= 5bp) 1841100 1883616 1934017 1977504 NC_060929.1 CM021572.2 96.94 True fake: not a misassembly (possible transposable element) 130523195 130526044 1980702 1977853 NC_060926.1 CM021572.2 99.72 True fake: not a misassembly (possible transposable element) 1883628 7309402 1980703 7405321 NC_060929.1 CM021572.2 99.4 True local misassembly 7311295 7955683 7407124 8050767 NC_060929.1 CM021572.2 99.56 True indel: indel (> 5bp) 7955884 8195511 8050910 8290910 NC_060929.1 CM021572.2 99.55 True local misassembly 8200459 10212420 8291262 10306267 NC_060929.1 CM021572.2 99.68 True local misassembly 10214265 13266805 10306268 13359230 NC_060929.1 CM021572.2 99.76 True local misassembly 13267137 17521902 13359275 17611146 NC_060929.1 CM021572.2 99.71 True relocation, inconsistency = -20506 17531238 17569011 17648929 17611157 NC_060929.1 CM021572.2 99.48 True inversion 17569989 19223249 17648930 19300879 NC_060929.1 CM021572.2 99.75 True local misassembly 19223534 19317598 19301345 19395361 NC_060929.1 CM021572.2 99.85 True indel: indel (> 5bp) 19317573 21143953 19395368 21222879 NC_060929.1 CM021572.2 99.69 True local misassembly 21144110 21458191 21222934 21530589 NC_060929.1 CM021572.2 97.75 True local misassembly 21458139 21483386 21532830 21558096 NC_060929.1 CM021572.2 99.61 True relocation, inconsistency = 80532 21563919 22981382 21558097 22974871 NC_060929.1 CM021572.2 99.68 True local misassembly 22981380 23577370 22976232 23572201 NC_060929.1 CM021572.2 99.88 True local misassembly 23577418 29898156 23572340 29892170 NC_060929.1 CM021572.2 99.74 True local misassembly 29898423 34549249 29892328 34542877 NC_060929.1 CM021572.2 99.79 True relocation, inconsistency = 8998909 20836946 20899513 34606081 34542878 NC_060929.1 CM021572.2 97.29 True relocation, inconsistency = 13718233 34618242 34912100 34606577 34900469 NC_060929.1 CM021572.2 99.73 True indel: indel (> 5bp) 34912297 40291498 34900680 40279549 NC_060929.1 CM021572.2 99.79 True local misassembly 40297565 42831370 40279550 42813522 NC_060929.1 CM021572.2 99.85 True indel: indel (> 5bp) 42831443 42884048 42813636 42865927 NC_060929.1 CM021572.2 99.01 True local misassembly 42883805 43284812 42868363 43269848 NC_060929.1 CM021572.2 99.64 True local misassembly 43285186 43316066 43269939 43300855 NC_060929.1 CM021572.2 99.68 True indel: indel (> 5bp) 43316217 45625804 43301015 45611030 NC_060929.1 CM021572.2 99.91 True indel: indel (> 5bp) 45625979 46397323 45611174 46383336 NC_060929.1 CM021572.2 99.74 True local misassembly 46397332 46521578 46385108 46509757 NC_060929.1 CM021572.2 99.34 True local misassembly 46526763 46656936 46509758 46639928 NC_060929.1 CM021572.2 99.66 True local misassembly 46660868 46686347 46640627 46666110 NC_060929.1 CM021572.2 99.31 True relocation, inconsistency = 37755 46724633 46726317 46666641 46668325 NC_060929.1 CM021572.2 97.63 True local misassembly 46738961 46817091 46681137 46759959 NC_060929.1 CM021572.2 97.39 True local misassembly 46818320 46824537 46761250 46767467 NC_060929.1 CM021572.2 99.44 True local misassembly 46824878 46826545 46767468 46769135 NC_060929.1 CM021572.2 99.34 True local misassembly 46826546 46827113 46769476 46770043 NC_060929.1 CM021572.2 99.12 True local misassembly 46827713 46829543 46770636 46772466 NC_060929.1 CM021572.2 99.24 True local misassembly 46830350 46837627 46773272 46780549 NC_060929.1 CM021572.2 98.06 True indel: stretch of mismatches 46837907 46971316 46780829 46914238 NC_060929.1 CM021572.2 100.0 True local misassembly 46967526 46973008 46915887 46921369 NC_060929.1 CM021572.2 99.23 True local misassembly 46967729 46970288 46922551 46925110 NC_060929.1 CM021572.2 99.34 True local misassembly 46967729 46968379 46926292 46926942 NC_060929.1 CM021572.2 99.85 True indel: indel (<= 5bp) 46968381 46970448 46926943 46929010 NC_060929.1 CM021572.2 98.94 True indel: indel (<= 5bp) 46970449 46973168 46929012 46931731 NC_060929.1 CM021572.2 98.71 True indel: indel (<= 5bp) 46973416 46974977 46931977 46933538 NC_060929.1 CM021572.2 97.12 True local misassembly 46980445 47019273 46933906 46972733 NC_060929.1 CM021572.2 97.65 True local misassembly 47023626 47031073 46974706 46982155 NC_060929.1 CM021572.2 98.39 True translocation 29178373 29181032 46986692 46989351 NC_060943.1 CM021572.2 96.13 True translocation 46826546 46828032 46990774 46992255 NC_060929.1 CM021572.2 98.52 True local misassembly 46830370 46836687 46994251 47000567 NC_060929.1 CM021572.2 98.78 True relocation, inconsistency = 197863 47034551 47036511 47000568 47002529 NC_060929.1 CM021572.2 99.15 True relocation, inconsistency = 23109 47059638 47092663 47002547 47035571 NC_060929.1 CM021572.2 99.74 True local misassembly 47095015 47191673 47037923 47134581 NC_060929.1 CM021572.2 99.85 True relocation, inconsistency = 2214156 49405881 49407308 47134633 47136060 NC_060929.1 CM021572.2 98.46 True relocation, inconsistency = -55030 49352383 49354088 47136165 47137870 NC_060929.1 CM021572.2 98.12 True local misassembly 49354602 49355934 47138384 47139716 NC_060929.1 CM021572.2 98.65 True relocation, inconsistency = -33632 49322488 49324343 47139902 47141758 NC_060929.1 CM021572.2 98.22 True relocation, inconsistency = 88324 49413858 49415532 47142949 47144623 NC_060929.1 CM021572.2 97.32 True relocation, inconsistency = 27513 49443409 49444197 47144987 47145774 NC_060929.1 CM021572.2 97.52 True relocation, inconsistency = -2241340 47202858 47209596 47145775 47152515 NC_060929.1 CM021572.2 98.78 True relocation, inconsistency = -12229 47200780 47202455 47155928 47157603 NC_060929.1 CM021572.2 98.51 True relocation, inconsistency = 2157434 49360593 49364962 47158307 47162676 NC_060929.1 CM021572.2 98.24 True relocation, inconsistency = 183462 49548425 49551143 47162677 47165395 NC_060929.1 CM021572.2 98.71 True relocation, inconsistency = -1183618 48368220 48369045 47166090 47166915 NC_060929.1 CM021572.2 98.58 True relocation, inconsistency = -1145049 47223997 47226971 47166916 47169890 NC_060929.1 CM021572.2 97.82 True indel: stretch of mismatches 47227291 47236527 47170210 47179444 NC_060929.1 CM021572.2 99.59 True relocation, inconsistency = 2098658 49335222 49336132 47179481 47180391 NC_060929.1 CM021572.2 98.68 True relocation, inconsistency = 107343 49443476 49447030 47180392 47183946 NC_060929.1 CM021572.2 98.2 True relocation, inconsistency = -97488 49350055 49350701 47184459 47185105 NC_060929.1 CM021572.2 98.92 True relocation, inconsistency = -15968 49335858 49339023 47186230 47189396 NC_060929.1 CM021572.2 98.65 True relocation, inconsistency = 73035 49412059 49420810 47189397 47198154 NC_060929.1 CM021572.2 98.14 True local misassembly 49414718 49418372 47198173 47201828 NC_060929.1 CM021572.2 97.73 True relocation, inconsistency = -2159465 47258908 47259900 47201829 47202821 NC_060929.1 CM021572.2 98.31 True relocation, inconsistency = 2294357 49554558 49558649 47203122 47207213 NC_060929.1 CM021572.2 98.34 True relocation, inconsistency = -232048 49339720 49342739 47220332 47223352 NC_060929.1 CM021572.2 98.64 True relocation, inconsistency = -68293 49279025 49281387 47227931 47230293 NC_060929.1 CM021572.2 97.63 True local misassembly 49283442 49285124 47233369 47235052 NC_060929.1 CM021572.2 98.1 True relocation, inconsistency = -7825 49309634 49316042 47267387 47273797 NC_060929.1 CM021572.2 98.92 True relocation, inconsistency = 69978 49388144 49390821 47275921 47278599 NC_060929.1 CM021572.2 98.61 True relocation, inconsistency = -81530 49309292 49316042 47278600 47285352 NC_060929.1 CM021572.2 98.9 True relocation, inconsistency = -27864 49300053 49301488 47297227 47298662 NC_060929.1 CM021572.2 98.54 True relocation, inconsistency = 10867 49321175 49324202 47307482 47310508 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = 68615 49397001 49401429 47314692 47319122 NC_060929.1 CM021572.2 97.88 True relocation, inconsistency = -110406 49291024 49293289 47319123 47321389 NC_060929.1 CM021572.2 98.15 True relocation, inconsistency = -978759 48316473 48319081 47323332 47325940 NC_060929.1 CM021572.2 98.54 True relocation, inconsistency = -936063 47383737 47406255 47326659 47349177 NC_060929.1 CM021572.2 99.91 True relocation, inconsistency = -105697 47300794 47302472 47349413 47351091 NC_060929.1 CM021572.2 98.81 True relocation, inconsistency = 2270901 49573952 49574931 47351670 47352650 NC_060929.1 CM021572.2 97.55 True translocation 122671620 122672342 47354121 47354843 NC_060925.1 CM021572.2 96.96 True translocation 48367540 48369702 47357088 47359251 NC_060929.1 CM021572.2 98.8 True relocation, inconsistency = 939345 49309381 49311766 47359585 47361969 NC_060929.1 CM021572.2 98.74 True relocation, inconsistency = 135200 49447322 49449684 47362325 47364687 NC_060929.1 CM021572.2 98.56 True relocation, inconsistency = -2091816 47359783 47365483 47366602 47372302 NC_060929.1 CM021572.2 98.18 True translocation 126107502 126108224 47372303 47373024 NC_060925.1 CM021572.2 96.44 True translocation 49277666 49281387 47377137 47380859 NC_060929.1 CM021572.2 98.2 True relocation, inconsistency = -920999 48362104 48364267 47382575 47384738 NC_060929.1 CM021572.2 98.84 True relocation, inconsistency = 1208429 49573928 49574915 47385970 47386958 NC_060929.1 CM021572.2 97.78 True relocation, inconsistency = -237146 49338141 49340303 47387330 47389493 NC_060929.1 CM021572.2 98.89 True relocation, inconsistency = -44847 49309745 49316042 47403782 47410081 NC_060929.1 CM021572.2 99.06 True relocation, inconsistency = -8834 49309292 49314116 47412165 47416990 NC_060929.1 CM021572.2 98.86 True local misassembly 49322511 49324543 47419952 47421986 NC_060929.1 CM021572.2 98.77 True relocation, inconsistency = 116854 49447847 49450232 47428436 47430820 NC_060929.1 CM021572.2 98.66 True relocation, inconsistency = -1086438 48367540 48369702 47434566 47436729 NC_060929.1 CM021572.2 98.84 True relocation, inconsistency = 904684 49279025 49281150 47441368 47443494 NC_060929.1 CM021572.2 98.45 True relocation, inconsistency = -1101738 48184763 48185466 47448845 47449548 NC_060929.1 CM021572.2 98.15 True local misassembly 48185806 48186444 47449549 47450187 NC_060929.1 CM021572.2 97.65 True relocation, inconsistency = -713496 47474466 47484512 47451705 47461751 NC_060929.1 CM021572.2 99.21 True indel: indel (<= 5bp) 47484790 47487364 47462025 47464598 NC_060929.1 CM021572.2 98.83 True relocation, inconsistency = 1901173 49397363 49399408 47473424 47475469 NC_060929.1 CM021572.2 99.02 True relocation, inconsistency = -1428557 47971407 47972760 47476025 47477378 NC_060929.1 CM021572.2 99.19 True relocation, inconsistency = 1388473 49363360 49364480 47479505 47480625 NC_060929.1 CM021572.2 98.31 True relocation, inconsistency = 210649 49575645 49577989 47481141 47483485 NC_060929.1 CM021572.2 99.19 True relocation, inconsistency = -255493 49323872 49328577 47484861 47489564 NC_060929.1 CM021572.2 98.22 True fake: not a misassembly (possible transposable element) 49309745 49313804 47489756 47493815 NC_060929.1 CM021572.2 98.82 True fake: not a misassembly (possible transposable element) 49336800 49342541 47494728 47500469 NC_060929.1 CM021572.2 98.29 True relocation, inconsistency = -1160854 48184083 48185466 47502865 47504248 NC_060929.1 CM021572.2 98.84 True local misassembly 48185806 48187204 47504249 47505647 NC_060929.1 CM021572.2 96.85 True relocation, inconsistency = 1385426 49573928 49574967 47506945 47507985 NC_060929.1 CM021572.2 97.41 True relocation, inconsistency = -2274978 47300445 47302410 47508441 47510400 NC_060929.1 CM021572.2 98.17 True relocation, inconsistency = 2130570 49434614 49436095 47512034 47513515 NC_060929.1 CM021572.2 98.38 True relocation, inconsistency = 12570 49450919 49452939 47515769 47517791 NC_060929.1 CM021572.2 98.52 True fake: not a misassembly (possible transposable element) 49253881 49256641 47520861 47523622 NC_060929.1 CM021572.2 98.59 True fake: not a misassembly (possible transposable element) 49458050 49460128 47524263 47526340 NC_060929.1 CM021572.2 98.27 True relocation, inconsistency = -128404 49335791 49337501 47530407 47532117 NC_060929.1 CM021572.2 98.71 True relocation, inconsistency = 21739 49362095 49363998 47534972 47536875 NC_060929.1 CM021572.2 98.32 True relocation, inconsistency = -1769999 47601458 47627243 47544334 47570119 NC_060929.1 CM021572.2 99.82 True fake: not a misassembly (possible transposable element) 49321930 49324202 47574298 47576571 NC_060929.1 CM021572.2 98.64 True fake: not a misassembly (possible transposable element) 47634940 47637641 47577820 47580521 NC_060929.1 CM021572.2 98.67 True relocation, inconsistency = 1600817 49250487 49253562 47592550 47595626 NC_060929.1 CM021572.2 98.44 True relocation, inconsistency = 51639 49309292 49311607 47599717 47602032 NC_060929.1 CM021572.2 98.66 True relocation, inconsistency = -999822 48316473 48319081 47606720 47609328 NC_060929.1 CM021572.2 98.89 True relocation, inconsistency = 1067419 49388144 49389122 47610972 47611950 NC_060929.1 CM021572.2 98.98 True relocation, inconsistency = -1720074 47684856 47686139 47627758 47629041 NC_060929.1 CM021572.2 98.36 True relocation, inconsistency = 987620 48691606 48693468 47646888 47648751 NC_060929.1 CM021572.2 98.29 True relocation, inconsistency = -331912 48362235 48364251 47649430 47651442 NC_060929.1 CM021572.2 98.46 True relocation, inconsistency = 931528 49296375 49299788 47652038 47655453 NC_060929.1 CM021572.2 97.66 True relocation, inconsistency = 173251 49479818 49484335 47662232 47666754 NC_060929.1 CM021572.2 97.99 True relocation, inconsistency = -135879 49349556 49353751 47667854 47672051 NC_060929.1 CM021572.2 97.9 True relocation, inconsistency = -1162891 48192336 48193972 47673527 47675163 NC_060929.1 CM021572.2 98.29 True relocation, inconsistency = -461714 47732609 47734792 47675514 47677698 NC_060929.1 CM021572.2 99.08 True translocation 124365122 124367626 47680547 47678042 NC_060925.1 CM021572.2 96.45 True translocation 49309463 49313040 47693340 47696919 NC_060929.1 CM021572.2 98.72 True relocation, inconsistency = -38734 49278803 49281150 47701416 47703764 NC_060929.1 CM021572.2 98.47 True relocation, inconsistency = -50973 49283186 49285124 47756773 47758712 NC_060929.1 CM021572.2 97.53 True local misassembly 49315747 49316600 47787991 47788844 NC_060929.1 CM021572.2 97.89 True relocation, inconsistency = -961093 48362104 48366221 47795441 47799559 NC_060929.1 CM021572.2 98.74 True relocation, inconsistency = -10533 48362104 48364267 47805975 47808138 NC_060929.1 CM021572.2 98.89 True relocation, inconsistency = -649257 47722093 47728610 47815221 47821732 NC_060929.1 CM021572.2 98.59 True relocation, inconsistency = 1688457 49427479 49429557 47832144 47834222 NC_060929.1 CM021572.2 98.17 True relocation, inconsistency = -1248834 48184083 48184765 47837582 47838264 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = 1137071 49321837 49324202 47838265 47840631 NC_060929.1 CM021572.2 98.27 True relocation, inconsistency = 130098 49459409 49460860 47845740 47847193 NC_060929.1 CM021572.2 98.62 True relocation, inconsistency = -74060 49396029 49396870 47856422 47857263 NC_060929.1 CM021572.2 99.52 True relocation, inconsistency = -37707 49359996 49363987 47858096 47862087 NC_060929.1 CM021572.2 98.38 True relocation, inconsistency = -52317 49311671 49316042 47862088 47866461 NC_060929.1 CM021572.2 98.77 True relocation, inconsistency = 90697 49415252 49417591 47874974 47877315 NC_060929.1 CM021572.2 98.42 True relocation, inconsistency = -1053151 48367309 48369702 47880184 47882578 NC_060929.1 CM021572.2 98.83 True relocation, inconsistency = 1079981 49450919 49452458 47883814 47885355 NC_060929.1 CM021572.2 98.44 True relocation, inconsistency = -188888 49277666 49280423 47899451 47902209 NC_060929.1 CM021572.2 98.15 True local misassembly 49277666 49280423 47902850 47905608 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = -912164 48368260 48369702 47905609 47907052 NC_060929.1 CM021572.2 99.08 True relocation, inconsistency = 1026987 49397045 49399459 47907408 47909822 NC_060929.1 CM021572.2 98.84 True relocation, inconsistency = -122975 49277666 49279119 47911004 47912457 NC_060929.1 CM021572.2 98.49 True relocation, inconsistency = 252422 49534161 49536923 47915077 47917839 NC_060929.1 CM021572.2 98.08 True relocation, inconsistency = -229320 49309699 49313040 47919935 47923276 NC_060929.1 CM021572.2 98.65 True relocation, inconsistency = -63889 49283442 49285124 47957567 47959250 NC_060929.1 CM021572.2 97.98 True relocation, inconsistency = -926099 48361760 48364267 47961985 47964492 NC_060929.1 CM021572.2 98.68 True relocation, inconsistency = 940022 49310959 49313804 47971162 47974008 NC_060929.1 CM021572.2 98.98 True relocation, inconsistency = 30905 49363308 49364962 47992607 47994261 NC_060929.1 CM021572.2 98.13 True relocation, inconsistency = -82221 49295333 49296778 48006853 48008299 NC_060929.1 CM021572.2 98.34 True relocation, inconsistency = -14612 49289557 49293278 48015690 48019412 NC_060929.1 CM021572.2 98.23 True relocation, inconsistency = 127391 49427479 49429557 48026222 48028300 NC_060929.1 CM021572.2 98.32 True relocation, inconsistency = -72355 49362095 49363998 48033193 48035096 NC_060929.1 CM021572.2 98.53 True relocation, inconsistency = -1271960 48151004 48171213 48094062 48114272 NC_060929.1 CM021572.2 99.29 True relocation, inconsistency = 1147934 49321694 49324008 48116819 48119134 NC_060929.1 CM021572.2 98.88 True relocation, inconsistency = 9851 49336133 49338265 48121408 48123539 NC_060929.1 CM021572.2 98.31 True relocation, inconsistency = 65219 49403904 49409121 48123959 48129177 NC_060929.1 CM021572.2 98.09 True relocation, inconsistency = -1223018 48196056 48217417 48139130 48160492 NC_060929.1 CM021572.2 99.69 True relocation, inconsistency = 1170699 49388636 49392349 48161012 48164731 NC_060929.1 CM021572.2 97.96 True relocation, inconsistency = -62161 49336787 49341182 48171330 48175727 NC_060929.1 CM021572.2 98.61 True local misassembly 49336787 49342541 48175748 48181504 NC_060929.1 CM021572.2 98.61 True relocation, inconsistency = -1104115 48240213 48253444 48183291 48196522 NC_060929.1 CM021572.2 99.6 True indel: stretch of mismatches 48253445 48255376 48196523 48198454 NC_060929.1 CM021572.2 99.75 True relocation, inconsistency = 1077276 49348193 49351042 48213995 48216846 NC_060929.1 CM021572.2 98.6 True fake: not a misassembly (possible transposable element) 49340179 49342541 48217534 48219897 NC_060929.1 CM021572.2 99.03 True fake: not a misassembly (possible transposable element) 49364791 49365982 48225499 48226691 NC_060929.1 CM021572.2 98.07 True relocation, inconsistency = -20042 49346281 49347677 48227032 48228428 NC_060929.1 CM021572.2 97.49 True local misassembly 49348017 49348657 48228429 48229069 NC_060929.1 CM021572.2 96.57 True indel: indel (<= 5bp) 49348658 49349698 48229071 48230111 NC_060929.1 CM021572.2 97.69 True local misassembly 49355136 49356469 48230112 48231445 NC_060929.1 CM021572.2 97.3 True local misassembly 49357188 49357981 48231824 48232617 NC_060929.1 CM021572.2 96.98 True indel: indel (<= 5bp) 49357982 49358808 48232620 48233446 NC_060929.1 CM021572.2 97.82 True relocation, inconsistency = -1068444 48290826 48292752 48233908 48235834 NC_060929.1 CM021572.2 100.0 True fake: not a misassembly (possible transposable element) 49323828 49324486 48235835 48236494 NC_060929.1 CM021572.2 97.75 True fake: not a misassembly (possible transposable element) 48293500 48297677 48236582 48240759 NC_060929.1 CM021572.2 99.95 True relocation, inconsistency = 1118038 49417205 49418007 48242249 48243052 NC_060929.1 CM021572.2 97.27 True translocation 126257880 126259554 48248416 48250086 NC_060925.1 CM021572.2 96.12 True translocation 47281433 47282842 48258786 48260193 NC_060929.1 CM021572.2 97.86 True relocation, inconsistency = 1034287 48317130 48328452 48260194 48271515 NC_060929.1 CM021572.2 99.67 True relocation, inconsistency = 34652 48367309 48369702 48275720 48278114 NC_060929.1 CM021572.2 98.87 True relocation, inconsistency = 990982 49362095 49364962 48279525 48282392 NC_060929.1 CM021572.2 98.15 True local misassembly 49362095 49363582 48284283 48285770 NC_060929.1 CM021572.2 98.42 True relocation, inconsistency = -72024 49291559 49293278 48285771 48287489 NC_060929.1 CM021572.2 97.73 True relocation, inconsistency = 146067 49449559 49452939 48297703 48301085 NC_060929.1 CM021572.2 98.46 True relocation, inconsistency = -161704 49297455 49298769 48307305 48308620 NC_060929.1 CM021572.2 97.19 True relocation, inconsistency = 114488 49414594 49418007 48309957 48313374 NC_060929.1 CM021572.2 98.16 True relocation, inconsistency = 154601 49573928 49575030 48314694 48315797 NC_060929.1 CM021572.2 97.9 True relocation, inconsistency = -1258369 48316662 48319081 48315798 48318217 NC_060929.1 CM021572.2 98.14 True relocation, inconsistency = 998799 49321837 49323996 48322174 48324334 NC_060929.1 CM021572.2 98.75 True relocation, inconsistency = -942745 48381803 48387042 48324886 48330126 NC_060929.1 CM021572.2 99.14 True local misassembly 48387890 48389787 48330974 48332871 NC_060929.1 CM021572.2 99.74 True relocation, inconsistency = 915898 49306978 49307953 48334164 48335139 NC_060929.1 CM021572.2 97.34 True translocation 28834165 28835044 48336279 48337160 NC_060943.1 CM021572.2 96.98 True translocation 49590953 49592573 48337161 48338781 NC_060929.1 CM021572.2 97.04 True relocation, inconsistency = -199788 49394551 49395143 48340547 48341139 NC_060929.1 CM021572.2 96.29 True local misassembly 49395144 49396028 48341479 48342363 NC_060929.1 CM021572.2 98.08 True indel: indel (<= 5bp) 49396029 49396870 48342365 48343206 NC_060929.1 CM021572.2 99.05 True local misassembly 49397211 49399522 48343207 48345518 NC_060929.1 CM021572.2 98.14 True indel: indel (<= 5bp) 49399765 49400330 48345763 48346328 NC_060929.1 CM021572.2 99.29 True relocation, inconsistency = -105309 49295077 49297015 48346384 48348323 NC_060929.1 CM021572.2 97.68 True fake: not a misassembly (possible transposable element) 49587846 49588688 48348324 48349168 NC_060929.1 CM021572.2 97.99 True fake: not a misassembly (possible transposable element) 49295483 49297015 48349169 48350702 NC_060929.1 CM021572.2 98.24 True relocation, inconsistency = -889409 48413740 48434786 48356836 48377882 NC_060929.1 CM021572.2 99.7 True relocation, inconsistency = 926439 49362963 49364331 48379620 48380988 NC_060929.1 CM021572.2 97.4 True relocation, inconsistency = 32607 49396939 49399249 48380989 48383296 NC_060929.1 CM021572.2 97.58 True local misassembly 49396934 49400783 48384039 48387885 NC_060929.1 CM021572.2 97.9 True relocation, inconsistency = -64540 49336244 49342341 48387886 48393980 NC_060929.1 CM021572.2 98.62 True fake: not a misassembly (possible transposable element) 49528934 49529786 48397123 48397975 NC_060929.1 CM021572.2 98.48 True fake: not a misassembly (possible transposable element) 49348193 49350495 48399495 48401798 NC_060929.1 CM021572.2 98.35 True relocation, inconsistency = 149813 49500641 49505055 48402131 48406539 NC_060929.1 CM021572.2 97.69 True relocation, inconsistency = -1014414 48490883 48492690 48406781 48408588 NC_060929.1 CM021572.2 98.17 True relocation, inconsistency = 1080007 49573928 49575030 48409819 48410922 NC_060929.1 CM021572.2 97.99 True relocation, inconsistency = -1258369 48316662 48319081 48410923 48413342 NC_060929.1 CM021572.2 98.18 True relocation, inconsistency = 985207 49309634 49316042 48418688 48425098 NC_060929.1 CM021572.2 98.46 True local misassembly 49315814 49320597 48431328 48436112 NC_060929.1 CM021572.2 98.75 True relocation, inconsistency = 65558 49388144 49389122 48438101 48439079 NC_060929.1 CM021572.2 98.88 True relocation, inconsistency = -893133 48496309 48523012 48439399 48466102 NC_060929.1 CM021572.2 99.87 True relocation, inconsistency = 787491 49333747 49334784 48489346 48490383 NC_060929.1 CM021572.2 96.34 True local misassembly 49336133 49340303 48491733 48495904 NC_060929.1 CM021572.2 98.44 True relocation, inconsistency = -85616 49255021 49257405 48496238 48498623 NC_060929.1 CM021572.2 98.37 True relocation, inconsistency = 16982 49279025 49279703 48503261 48503940 NC_060929.1 CM021572.2 97.47 True relocation, inconsistency = 9853 49289557 49292314 48503941 48506698 NC_060929.1 CM021572.2 97.28 True relocation, inconsistency = 72023 49364813 49366786 48507174 48509147 NC_060929.1 CM021572.2 98.94 True relocation, inconsistency = -1000837 48367540 48369702 48510738 48512900 NC_060929.1 CM021572.2 98.71 True relocation, inconsistency = 1044313 49417932 49418451 48516817 48517336 NC_060929.1 CM021572.2 96.45 True relocation, inconsistency = -844207 48574245 48593176 48517337 48536268 NC_060929.1 CM021572.2 99.91 True relocation, inconsistency = 711391 49311420 49313804 48543121 48545506 NC_060929.1 CM021572.2 98.83 True relocation, inconsistency = -25483 49289557 49293041 48546742 48550227 NC_060929.1 CM021572.2 98.19 True local misassembly 49290694 49293278 48550598 48553183 NC_060929.1 CM021572.2 98.18 True relocation, inconsistency = -683194 48614536 48623121 48557635 48566220 NC_060929.1 CM021572.2 99.36 True relocation, inconsistency = 665521 49294191 49297019 48571769 48574598 NC_060929.1 CM021572.2 98.3 True relocation, inconsistency = 92739 49393916 49395369 48578756 48580209 NC_060929.1 CM021572.2 98.21 True relocation, inconsistency = -311510 49087434 49090277 48583784 48586626 NC_060929.1 CM021572.2 98.77 True relocation, inconsistency = -731788 48362784 48364267 48590921 48592403 NC_060929.1 CM021572.2 98.05 True relocation, inconsistency = 971279 49335880 49338201 48592737 48595058 NC_060929.1 CM021572.2 97.63 True local misassembly 49338878 49340239 48595735 48597095 NC_060929.1 CM021572.2 98.53 True relocation, inconsistency = 11550 49352408 49356078 48597714 48601384 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = 55368 49417147 49418971 48607085 48608906 NC_060929.1 CM021572.2 96.88 True relocation, inconsistency = -112103 49307060 49308045 48609098 48610083 NC_060929.1 CM021572.2 97.16 True indel: indel (<= 5bp) 49308047 49308607 48610084 48610644 NC_060929.1 CM021572.2 96.79 True local misassembly 49308947 49309591 48610645 48611289 NC_060929.1 CM021572.2 97.52 True fake: not a misassembly (possible transposable element) 48668283 48670066 48611389 48613172 NC_060929.1 CM021572.2 99.55 True fake: not a misassembly (possible transposable element) 49311326 49312313 48614722 48615710 NC_060929.1 CM021572.2 98.38 True local misassembly 49315487 49318221 48616846 48619579 NC_060929.1 CM021572.2 97.95 True local misassembly 49322240 49325790 48622921 48626473 NC_060929.1 CM021572.2 98.0 True relocation, inconsistency = -43486 49283186 49285124 48627355 48629294 NC_060929.1 CM021572.2 98.45 True relocation, inconsistency = 17325 49311642 49316042 48638487 48642889 NC_060929.1 CM021572.2 98.8 True relocation, inconsistency = -965850 48361865 48364251 48654562 48656948 NC_060929.1 CM021572.2 98.91 True relocation, inconsistency = 349578 48714104 48745778 48657223 48688898 NC_060929.1 CM021572.2 99.92 True relocation, inconsistency = 564968 49311648 49314156 48689800 48692309 NC_060929.1 CM021572.2 98.8 True relocation, inconsistency = 35665 49352408 49355076 48694896 48697565 NC_060929.1 CM021572.2 98.13 True relocation, inconsistency = -73392 49299271 49300785 48715152 48716666 NC_060929.1 CM021572.2 98.61 True relocation, inconsistency = -527259 48775292 48778189 48718432 48721329 NC_060929.1 CM021572.2 99.38 True local misassembly 48779239 48784993 48722380 48728135 NC_060929.1 CM021572.2 98.77 True relocation, inconsistency = 551379 49336373 49340999 48728136 48732764 NC_060929.1 CM021572.2 98.69 True local misassembly 49336244 49342541 48732765 48739062 NC_060929.1 CM021572.2 98.48 True relocation, inconsistency = -60135 49283216 49285125 48739872 48741783 NC_060929.1 CM021572.2 97.44 True relocation, inconsistency = 52659 49340661 49342283 48744660 48746282 NC_060929.1 CM021572.2 99.14 True local misassembly 49342624 49344279 48746283 48747938 NC_060929.1 CM021572.2 98.85 True relocation, inconsistency = -9174 49336133 49340303 48748966 48753137 NC_060929.1 CM021572.2 98.9 True relocation, inconsistency = 234088 49574392 49574931 48753138 48753677 NC_060929.1 CM021572.2 97.99 True relocation, inconsistency = -248025 49342313 49345502 48769084 48772273 NC_060929.1 CM021572.2 98.31 True relocation, inconsistency = -516386 48830224 48833855 48773381 48777012 NC_060929.1 CM021572.2 99.75 True indel: stretch of mismatches 48834348 48838054 48777505 48781211 NC_060929.1 CM021572.2 98.79 True relocation, inconsistency = 619648 49457917 49460128 48781426 48783633 NC_060929.1 CM021572.2 97.74 True relocation, inconsistency = -12228 49448165 49448944 48783898 48784677 NC_060929.1 CM021572.2 97.56 True local misassembly 49450603 49453019 48786338 48788756 NC_060929.1 CM021572.2 98.14 True relocation, inconsistency = -91376 49361664 49364083 48788777 48791196 NC_060929.1 CM021572.2 97.93 True relocation, inconsistency = 30908 49394992 49397207 48791197 48793413 NC_060929.1 CM021572.2 98.25 True relocation, inconsistency = 86626 49484211 49486374 48793791 48795954 NC_060929.1 CM021572.2 98.8 True relocation, inconsistency = -179706 49307025 49309387 48796311 48798673 NC_060929.1 CM021572.2 98.6 True relocation, inconsistency = -401565 48912454 48914616 48803305 48805468 NC_060929.1 CM021572.2 98.48 True relocation, inconsistency = 418551 49333524 49335886 48805825 48808187 NC_060929.1 CM021572.2 98.56 True relocation, inconsistency = -969582 48367540 48369702 48809423 48811586 NC_060929.1 CM021572.2 99.03 True relocation, inconsistency = 1135360 49505396 49508218 48811920 48814742 NC_060929.1 CM021572.2 98.65 True relocation, inconsistency = -101918 49406884 49410022 48815326 48818464 NC_060929.1 CM021572.2 97.81 True relocation, inconsistency = -534725 48875298 48882174 48818465 48825343 NC_060929.1 CM021572.2 98.72 True relocation, inconsistency = 504149 49388144 49391222 48827164 48830243 NC_060929.1 CM021572.2 98.8 True relocation, inconsistency = 22758 49415591 49417591 48831854 48833855 NC_060929.1 CM021572.2 98.6 True relocation, inconsistency = -319664 49098092 49100466 48834020 48836399 NC_060929.1 CM021572.2 98.66 True relocation, inconsistency = 232701 49333524 49336438 48836756 48839669 NC_060929.1 CM021572.2 97.7 True relocation, inconsistency = -257168 49082708 49087558 48843107 48847961 NC_060929.1 CM021572.2 98.5 True relocation, inconsistency = 219110 49307025 49309587 48848318 48850880 NC_060929.1 CM021572.2 98.56 True relocation, inconsistency = 40086 49351413 49354097 48852620 48855305 NC_060929.1 CM021572.2 98.55 True relocation, inconsistency = 83550 49456691 49458588 48874349 48876247 NC_060929.1 CM021572.2 97.37 True relocation, inconsistency = -138261 49324778 49327598 48880698 48883519 NC_060929.1 CM021572.2 98.44 True indel: stretch of mismatches 49328089 49329205 48884010 48885126 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = 86625 49415895 49416609 48885191 48885906 NC_060929.1 CM021572.2 97.99 True relocation, inconsistency = -473915 48942695 48949354 48885907 48892565 NC_060929.1 CM021572.2 99.14 True fake: not a misassembly (possible transposable element) 49336244 49341577 48895561 48900895 NC_060929.1 CM021572.2 98.97 True fake: not a misassembly (possible transposable element) 48974301 48982575 48917513 48925787 NC_060929.1 CM021572.2 99.66 True relocation, inconsistency = 329190 49313540 49314483 48927562 48928506 NC_060929.1 CM021572.2 98.52 True relocation, inconsistency = 102590 49417147 49419366 48928580 48930799 NC_060929.1 CM021572.2 97.84 True relocation, inconsistency = -1616781 47802586 47803264 48930800 48931479 NC_060929.1 CM021572.2 99.07 True relocation, inconsistency = 562616 48367540 48369702 48933139 48935302 NC_060929.1 CM021572.2 98.66 True relocation, inconsistency = -249361 48145050 48145745 48960011 48960706 NC_060929.1 CM021572.2 97.84 True relocation, inconsistency = 1129573 49291595 49293024 48976983 48978412 NC_060929.1 CM021572.2 98.04 True local misassembly 49293365 49295016 48978413 48980064 NC_060929.1 CM021572.2 98.55 True relocation, inconsistency = -940367 48362104 48364277 48987519 48989692 NC_060929.1 CM021572.2 98.3 True local misassembly 48371569 48373377 48995627 48997435 NC_060929.1 CM021572.2 99.0 True local misassembly 48371591 48372335 48997687 48998431 NC_060929.1 CM021572.2 98.93 True relocation, inconsistency = 975693 49351732 49355076 49002135 49005481 NC_060929.1 CM021572.2 98.27 True relocation, inconsistency = 60805 49415882 49418007 49005482 49007612 NC_060929.1 CM021572.2 98.08 True relocation, inconsistency = -86964 49333524 49335886 49010093 49012455 NC_060929.1 CM021572.2 98.05 True relocation, inconsistency = -29218 49307025 49309387 49012812 49015174 NC_060929.1 CM021572.2 98.31 True local misassembly 49309292 49311002 49018140 49019850 NC_060929.1 CM021572.2 98.31 True relocation, inconsistency = 135199 49449560 49451638 49023209 49025287 NC_060929.1 CM021572.2 98.37 True relocation, inconsistency = -369602 49084680 49091254 49027931 49034506 NC_060929.1 CM021572.2 98.72 True relocation, inconsistency = 256821 49348500 49350495 49034931 49036927 NC_060929.1 CM021572.2 98.85 True relocation, inconsistency = -186831 49168086 49169774 49041349 49043038 NC_060929.1 CM021572.2 98.99 True relocation, inconsistency = -1037540 48134148 48137339 49044952 49048142 NC_060929.1 CM021572.2 98.75 True relocation, inconsistency = -981986 47156249 47157596 49049038 49050385 NC_060929.1 CM021572.2 98.15 True relocation, inconsistency = 2166259 49324974 49327392 49051504 49053923 NC_060929.1 CM021572.2 98.64 True relocation, inconsistency = -13929 49315747 49316730 49056207 49057190 NC_060929.1 CM021572.2 97.26 True relocation, inconsistency = -1032781 48316918 48319081 49090159 49092322 NC_060929.1 CM021572.2 98.8 True translocation 122011330 122013193 49093218 49095081 NC_060925.1 CM021572.2 96.41 True translocation 49359996 49363681 49126640 49130325 NC_060929.1 CM021572.2 98.16 True relocation, inconsistency = -70325 49293357 49293966 49130326 49130935 NC_060929.1 CM021572.2 97.55 True relocation, inconsistency = 107688 49404040 49405383 49133321 49134664 NC_060929.1 CM021572.2 98.81 True indel: stretch of mismatches 49405827 49407550 49135108 49136831 NC_060929.1 CM021572.2 98.84 True fake: not a misassembly (possible transposable element) 49349100 49352032 49138506 49141439 NC_060929.1 CM021572.2 98.21 True fake: not a misassembly (possible transposable element) 49415895 49419111 49141440 49144658 NC_060929.1 CM021572.2 98.39 True relocation, inconsistency = -125693 49293419 49293966 49144659 49145206 NC_060929.1 CM021572.2 97.51 True relocation, inconsistency = 15969 49312326 49316042 49147597 49151314 NC_060929.1 CM021572.2 98.76 True relocation, inconsistency = -40772 49279704 49281381 49155748 49157425 NC_060929.1 CM021572.2 97.97 True relocation, inconsistency = -940028 48367540 48371656 49183612 49187730 NC_060929.1 CM021572.2 98.91 True relocation, inconsistency = 964824 49342313 49343454 49193563 49194704 NC_060929.1 CM021572.2 98.38 True relocation, inconsistency = -56398 49287057 49292189 49194705 49199838 NC_060929.1 CM021572.2 98.01 True local misassembly 49292701 49293278 49200351 49200928 NC_060929.1 CM021572.2 97.58 True relocation, inconsistency = -8154 49288221 49293278 49204025 49209086 NC_060929.1 CM021572.2 98.16 True relocation, inconsistency = 58092 49359682 49363022 49217398 49220736 NC_060929.1 CM021572.2 97.8 True relocation, inconsistency = -85612 49277411 49293041 49220737 49236367 NC_060929.1 CM021572.2 99.61 True indel: stretch of mismatches 49293258 49296675 49236584 49240001 NC_060929.1 CM021572.2 99.88 True relocation, inconsistency = 275197 49575645 49578072 49243774 49246201 NC_060929.1 CM021572.2 98.76 True relocation, inconsistency = -173966 49405739 49407817 49247834 49249912 NC_060929.1 CM021572.2 98.51 True relocation, inconsistency = -101233 49310247 49314738 49253575 49258064 NC_060929.1 CM021572.2 98.58 True relocation, inconsistency = -227944 49087434 49091254 49258704 49262523 NC_060929.1 CM021572.2 97.88 True relocation, inconsistency = 254442 49348017 49357598 49264844 49274428 NC_060929.1 CM021572.2 98.1 True relocation, inconsistency = 24456 49382055 49383700 49274429 49276074 NC_060929.1 CM021572.2 98.68 True translocation 26920647 26921299 49276720 49277372 NC_060943.1 CM021572.2 96.94 True translocation 49397930 49400592 49282154 49284818 NC_060929.1 CM021572.2 99.29 True relocation, inconsistency = -59104 49345280 49350420 49288610 49293750 NC_060929.1 CM021572.2 99.26 True relocation, inconsistency = 236138 49590333 49590888 49297525 49298080 NC_060929.1 CM021572.2 97.84 True relocation, inconsistency = -308155 49290501 49291244 49305848 49306591 NC_060929.1 CM021572.2 98.66 True relocation, inconsistency = 67605 49362095 49364962 49309837 49312704 NC_060929.1 CM021572.2 98.19 True relocation, inconsistency = 38383 49404128 49405383 49313487 49314742 NC_060929.1 CM021572.2 98.73 True local misassembly 49405995 49407294 49315354 49316653 NC_060929.1 CM021572.2 98.69 True relocation, inconsistency = 36007 49443445 49446776 49316797 49320128 NC_060929.1 CM021572.2 98.08 True relocation, inconsistency = -105645 49341132 49342541 49320129 49321538 NC_060929.1 CM021572.2 98.32 True relocation, inconsistency = 18684 49362095 49364977 49322408 49325290 NC_060929.1 CM021572.2 97.45 True relocation, inconsistency = -10532 49354446 49356108 49325291 49326953 NC_060929.1 CM021572.2 98.03 True relocation, inconsistency = -19363 49336746 49340850 49326954 49331060 NC_060929.1 CM021572.2 97.78 True relocation, inconsistency = 46877 49391133 49393913 49334466 49337247 NC_060929.1 CM021572.2 97.66 True local misassembly 49394527 49399249 49337862 49342585 NC_060929.1 CM021572.2 98.92 True fake: not a misassembly (possible transposable element) 49321837 49324154 49343303 49345621 NC_060929.1 CM021572.2 98.84 True fake: not a misassembly (possible transposable element) 49403044 49406406 49346384 49349746 NC_060929.1 CM021572.2 98.99 True indel: indel (<= 5bp) 49406782 49426964 49350123 49370308 NC_060929.1 CM021572.2 99.29 True relocation, inconsistency = 29212 49456177 49460128 49370309 49374261 NC_060929.1 CM021572.2 98.3 True relocation, inconsistency = -100547 49360593 49363278 49375273 49377958 NC_060929.1 CM021572.2 98.41 True relocation, inconsistency = 50615 49413894 49418850 49377959 49382919 NC_060929.1 CM021572.2 98.22 True local misassembly 49412059 49421065 49382920 49391932 NC_060929.1 CM021572.2 98.16 True relocation, inconsistency = 27517 49448583 49454263 49391933 49397617 NC_060929.1 CM021572.2 98.25 True local misassembly 49454902 49479684 49398254 49423038 NC_060929.1 CM021572.2 99.28 True relocation, inconsistency = -126708 49356145 49359865 49426207 49429929 NC_060929.1 CM021572.2 98.44 True local misassembly 49361546 49363681 49431611 49433746 NC_060929.1 CM021572.2 98.03 True relocation, inconsistency = -29895 49335791 49347279 49435751 49446897 NC_060929.1 CM021572.2 95.98 True relocation, inconsistency = 93412 49440692 49445759 49446898 49451964 NC_060929.1 CM021572.2 98.39 True relocation, inconsistency = 62854 49514454 49528371 49457805 49471721 NC_060929.1 CM021572.2 99.57 True indel: stretch of mismatches 49528696 49533564 49472046 49476914 NC_060929.1 CM021572.2 99.55 True relocation, inconsistency = 16998 49551156 49553579 49477508 49479931 NC_060929.1 CM021572.2 98.93 True relocation, inconsistency = -86657 49466923 49467556 49479932 49480565 NC_060929.1 CM021572.2 96.91 True local misassembly 49467901 49470264 49480570 49482933 NC_060929.1 CM021572.2 97.8 True relocation, inconsistency = 75101 49548194 49553277 49485762 49490845 NC_060929.1 CM021572.2 98.86 True relocation, inconsistency = -8497 49545199 49548424 49491264 49494489 NC_060929.1 CM021572.2 98.7 True local misassembly 49553632 49556676 49496978 49500022 NC_060929.1 CM021572.2 99.28 True relocation, inconsistency = -205548 49351589 49354361 49500483 49503257 NC_060929.1 CM021572.2 98.67 True relocation, inconsistency = 40762 49396903 49397867 49505037 49506001 NC_060929.1 CM021572.2 97.2 True relocation, inconsistency = 188252 49590333 49591040 49510215 49510921 NC_060929.1 CM021572.2 97.18 True relocation, inconsistency = -2173009 47418360 47418890 49511250 49511780 NC_060929.1 CM021572.2 98.12 True relocation, inconsistency = 2155017 49576720 49577450 49514593 49515323 NC_060929.1 CM021572.2 98.08 True fake: not a misassembly (possible transposable element) 49500641 49502263 49515657 49517279 NC_060929.1 CM021572.2 97.06 True fake: not a misassembly (possible transposable element) 49573970 49577608 49517280 49520918 NC_060929.1 CM021572.2 98.19 True local misassembly 49578720 49583142 49522031 49526451 NC_060929.1 CM021572.2 97.72 True indel: stretch of mismatches 49583267 49587104 49526576 49530413 NC_060929.1 CM021572.2 97.55 True local misassembly 49594999 49595644 49537625 49538270 NC_060929.1 CM021572.2 96.13 True local misassembly 49595945 49596464 49539252 49539771 NC_060929.1 CM021572.2 97.31 True indel: indel (<= 5bp) 49596765 49598312 49540070 49541617 NC_060929.1 CM021572.2 98.51 True indel: indel (<= 5bp) 49598794 49599457 49542094 49542757 NC_060929.1 CM021572.2 99.4 True indel: stretch of mismatches 49599940 49601749 49543240 49545049 NC_060929.1 CM021572.2 99.17 True indel: indel (<= 5bp) 49601750 49602357 49545055 49545662 NC_060929.1 CM021572.2 99.18 True local misassembly 49605719 49606432 49548869 49549582 NC_060929.1 CM021572.2 97.2 True local misassembly 49607243 49608015 49550363 49551135 NC_060929.1 CM021572.2 97.28 True local misassembly 49608931 49609568 49551990 49552627 NC_060929.1 CM021572.2 95.77 True indel: indel (> 5bp) 49610008 49611734 49553052 49554778 NC_060929.1 CM021572.2 97.68 True indel: indel (> 5bp) 49612015 49612806 49555039 49555830 NC_060929.1 CM021572.2 98.86 True local misassembly 49613376 49614005 49556380 49557009 NC_060929.1 CM021572.2 98.57 True indel: indel (<= 5bp) 49614006 49614833 49557015 49557842 NC_060929.1 CM021572.2 98.91 True indel: stretch of mismatches 49615053 49617015 49558062 49560024 NC_060929.1 CM021572.2 98.22 True local misassembly 49618840 49619597 49561667 49562424 NC_060929.1 CM021572.2 99.08 True local misassembly 49619801 49620540 49562488 49563227 NC_060929.1 CM021572.2 98.78 True indel: indel (> 5bp) 49620703 49621475 49563350 49564122 NC_060929.1 CM021572.2 99.48 True indel: indel (> 5bp) 49621476 49622210 49564133 49564867 NC_060929.1 CM021572.2 99.59 True local misassembly 49629508 49630105 49571931 49572528 NC_060929.1 CM021572.2 96.99 True local misassembly 49631965 49632772 49574143 49574950 NC_060929.1 CM021572.2 97.77 True local misassembly 49633770 49634575 49575901 49576706 NC_060929.1 CM021572.2 97.52 True indel: indel (> 5bp) 49635012 49635627 49577153 49577768 NC_060929.1 CM021572.2 96.75 True indel: indel (> 5bp) 49635843 49636467 49578004 49578628 NC_060929.1 CM021572.2 97.28 True local misassembly 49641478 49645254 49583311 49587052 NC_060929.1 CM021572.2 95.89 True local misassembly 49646443 49647369 49588221 49589147 NC_060929.1 CM021572.2 99.03 True indel: indel (<= 5bp) 49647370 49647917 49589149 49589696 NC_060929.1 CM021572.2 98.91 True local misassembly 49654976 49660021 49596200 49601245 NC_060929.1 CM021572.2 98.95 True indel: stretch of mismatches 49660310 49661841 49601534 49603080 NC_060929.1 CM021572.2 95.67 True local misassembly 49663860 49665754 49605115 49606984 NC_060929.1 CM021572.2 95.91 True local misassembly 49672010 49672859 49612918 49613767 NC_060929.1 CM021572.2 98.94 True local misassembly 49686352 49686911 49626612 49627171 NC_060929.1 CM021572.2 97.5 True local misassembly 49687472 49693523 49627715 49633745 NC_060929.1 CM021572.2 98.32 True local misassembly 49698529 49699045 49638695 49639211 NC_060929.1 CM021572.2 99.42 True local misassembly 49706855 49707633 49646380 49647158 NC_060929.1 CM021572.2 98.07 True local misassembly 49710680 49711529 49650094 49650943 NC_060929.1 CM021572.2 98.59 True local misassembly 49720679 49721472 49659888 49660681 NC_060929.1 CM021572.2 97.1 True indel: indel (> 5bp) 49721751 49722675 49660985 49661908 NC_060929.1 CM021572.2 99.57 True local misassembly 49724270 49728472 49663425 49667608 NC_060929.1 CM021572.2 96.09 True indel: indel (> 5bp) 49728623 49730270 49667744 49669401 NC_060929.1 CM021572.2 98.85 True local misassembly 49731788 49733112 49670999 49672343 NC_060929.1 CM021572.2 95.02 True indel: indel (> 5bp) 49733332 49739390 49672577 49678621 NC_060929.1 CM021572.2 95.24 True indel: indel (> 5bp) 49739523 49742457 49678769 49681693 NC_060929.1 CM021572.2 99.08 True indel: indel (<= 5bp) 49742697 49744930 49681938 49684161 NC_060929.1 CM021572.2 97.5 True local misassembly 49746003 49746870 49685189 49686056 NC_060929.1 CM021572.2 98.62 True local misassembly 49747593 49748153 49686854 49687414 NC_060929.1 CM021572.2 97.68 True local misassembly 49749425 49750553 49688662 49689790 NC_060929.1 CM021572.2 99.2 True indel: indel (> 5bp) 49750646 49751641 49689873 49690868 NC_060929.1 CM021572.2 99.6 True local misassembly 49761905 49762508 49700831 49701434 NC_060929.1 CM021572.2 97.68 True indel: indel (> 5bp) 49762880 49763520 49701871 49702511 NC_060929.1 CM021572.2 98.75 True local misassembly 49767051 49767825 49705831 49706605 NC_060929.1 CM021572.2 98.84 True local misassembly 49774177 49775938 49712623 49714419 NC_060929.1 CM021572.2 95.57 True local misassembly 49777941 49778574 49716468 49717101 NC_060929.1 CM021572.2 99.37 True local misassembly 49779943 49780504 49718405 49718966 NC_060929.1 CM021572.2 98.93 True local misassembly 49781622 49782343 49720079 49720800 NC_060929.1 CM021572.2 99.31 True local misassembly 49783351 49789262 49721804 49727625 NC_060929.1 CM021572.2 96.43 True local misassembly 49790073 49790739 49728386 49729052 NC_060929.1 CM021572.2 96.7 True local misassembly 49791350 49791967 49729608 49730225 NC_060929.1 CM021572.2 97.41 True local misassembly 49795227 49797802 49733370 49735890 NC_060929.1 CM021572.2 95.67 True local misassembly 49806885 49807531 49744451 49745097 NC_060929.1 CM021572.2 97.68 True local misassembly 49814182 49814853 49751638 49752309 NC_060929.1 CM021572.2 98.07 True local misassembly 49817912 49818794 49755192 49756079 NC_060929.1 CM021572.2 96.17 True local misassembly 49822333 49823446 49759470 49760583 NC_060929.1 CM021572.2 97.76 True local misassembly 49824708 49825283 49761796 49762371 NC_060929.1 CM021572.2 96.04 True local misassembly 49828097 49839976 49765150 49776984 NC_060929.1 CM021572.2 96.86 True local misassembly 49844429 49845185 49781301 49782057 NC_060929.1 CM021572.2 99.21 True local misassembly 49848031 49848532 49784765 49785266 NC_060929.1 CM021572.2 97.81 True local misassembly 49849367 49849946 49786027 49786601 NC_060929.1 CM021572.2 97.93 True local misassembly 49856477 49857287 49792902 49793712 NC_060929.1 CM021572.2 98.64 True local misassembly 49861675 49862407 49797879 49798611 NC_060929.1 CM021572.2 97.68 True local misassembly 49863778 49865318 49799852 49801362 NC_060929.1 CM021572.2 95.16 True local misassembly 49866897 49868824 49802725 49804667 NC_060929.1 CM021572.2 95.42 True local misassembly 49869374 49872289 49805122 49807967 NC_060929.1 CM021572.2 95.64 True indel: indel (> 5bp) 49872780 49874787 49808419 49810401 NC_060929.1 CM021572.2 95.72 True indel: indel (> 5bp) 49875086 49876065 49810660 49811639 NC_060929.1 CM021572.2 96.53 True local misassembly 49877909 49878633 49813374 49814098 NC_060929.1 CM021572.2 97.38 True local misassembly 49879563 49880218 49815047 49815702 NC_060929.1 CM021572.2 98.93 True local misassembly 49881169 49881842 49816603 49817276 NC_060929.1 CM021572.2 99.85 True indel: indel (> 5bp) 49881974 49882569 49817397 49817992 NC_060929.1 CM021572.2 99.33 True indel: indel (> 5bp) 49882805 49883534 49818208 49818937 NC_060929.1 CM021572.2 99.04 True indel: indel (<= 5bp) 49883665 49884291 49819063 49819689 NC_060929.1 CM021572.2 98.88 True local misassembly 49887702 49888523 49822894 49823715 NC_060929.1 CM021572.2 97.08 True indel: indel (> 5bp) 49888801 49889705 49823978 49824882 NC_060929.1 CM021572.2 96.35 True local misassembly 49890583 49891097 49825725 49826239 NC_060929.1 CM021572.2 98.45 True local misassembly 49893018 49893598 49828109 49828689 NC_060929.1 CM021572.2 98.97 True indel: indel (> 5bp) 49893860 49894552 49828932 49829624 NC_060929.1 CM021572.2 98.7 True indel: indel (> 5bp) 49894563 49895304 49829625 49830366 NC_060929.1 CM021572.2 98.79 True local misassembly 49895903 49896576 49830835 49831508 NC_060929.1 CM021572.2 98.66 True local misassembly 49897937 49899385 49832798 49834246 NC_060929.1 CM021572.2 98.48 True indel: indel (> 5bp) 49899396 49900026 49834247 49834877 NC_060929.1 CM021572.2 99.21 True local misassembly 49901135 49901823 49835807 49836495 NC_060929.1 CM021572.2 98.69 True local misassembly 49902869 49903465 49837521 49838117 NC_060929.1 CM021572.2 97.99 True indel: indel (> 5bp) 49903509 49904023 49838146 49838660 NC_060929.1 CM021572.2 98.06 True indel: indel (<= 5bp) 49904085 49904607 49838717 49839239 NC_060929.1 CM021572.2 99.04 True local misassembly 49905313 49905941 49839960 49840588 NC_060929.1 CM021572.2 98.89 True indel: indel (> 5bp) 49906054 49906734 49840650 49841330 NC_060929.1 CM021572.2 97.8 True local misassembly 49908368 49908911 49842791 49843334 NC_060929.1 CM021572.2 99.63 True local misassembly 49911577 50133520 49845920 50067263 NC_060929.1 CM021572.2 99.17 True indel: indel (<= 5bp) 50133850 50134680 50067594 50068425 NC_060929.1 CM021572.2 98.2 True local misassembly 50135238 50136899 50068980 50070641 NC_060929.1 CM021572.2 97.17 True local misassembly 50137823 50144986 50071565 50078728 NC_060929.1 CM021572.2 98.42 True local misassembly 50145157 50186765 50078729 50120507 NC_060929.1 CM021572.2 98.6 True local misassembly 50187467 50385802 50121036 50318505 NC_060929.1 CM021572.2 98.99 True indel: stretch of mismatches 50385960 50395119 50318663 50327651 NC_060929.1 CM021572.2 96.93 True indel: stretch of mismatches 50395341 50420324 50327873 50352514 NC_060929.1 CM021572.2 97.65 True indel: indel (<= 5bp) 50420469 50421952 50352660 50354140 NC_060929.1 CM021572.2 98.38 True indel: indel (<= 5bp) 50422297 50445423 50354484 50377610 NC_060929.1 CM021572.2 99.92 True fake: not a misassembly (possible transposable element) 50436899 50438959 50377611 50379671 NC_060929.1 CM021572.2 97.79 True fake: not a misassembly (possible transposable element) 50447485 50541005 50379672 50472517 NC_060929.1 CM021572.2 98.76 True relocation, inconsistency = 8005 50549011 50579792 50472518 50502779 NC_060929.1 CM021572.2 97.12 True local misassembly 50575857 50579197 50502933 50506272 NC_060929.1 CM021572.2 99.46 True translocation 25533036 25533711 50508439 50507764 NC_060943.1 CM021572.2 97.34 True indel: indel (<= 5bp) 25532532 25533034 50508942 50508440 NC_060943.1 CM021572.2 96.02 True local misassembly 25531559 25532088 50509745 50509216 NC_060943.1 CM021572.2 95.66 True indel: indel (<= 5bp) 25530551 25531557 50510752 50509746 NC_060943.1 CM021572.2 96.52 True indel: indel (<= 5bp) 25527709 25530206 50513591 50511096 NC_060943.1 CM021572.2 98.08 True translocation 83958113 83960247 50515730 50513592 NC_060947.1 CM021572.2 95.85 True relocation, inconsistency = 47376414 131337061 131340234 50516130 50519304 NC_060947.1 CM021572.2 96.0 True translocation 50584685 50592956 50519691 50527961 NC_060929.1 CM021572.2 97.72 True translocation 25287507 25308466 50550536 50529408 NC_060943.1 CM021572.2 97.05 True translocation 50607849 50671361 50550537 50613700 NC_060929.1 CM021572.2 98.89 True translocation 24715683 24716452 50614591 50613823 NC_060943.1 CM021572.2 96.13 True fake: not a misassembly (possible transposable element) 50704443 50706605 50614592 50616753 NC_060929.1 CM021572.2 96.6 True fake: not a misassembly (possible transposable element) 24709579 24713519 50620692 50616754 NC_060943.1 CM021572.2 96.07 True translocation 50732334 50762410 50620866 50650941 NC_060929.1 CM021572.2 97.85 True relocation, inconsistency = -30995 50731416 50962189 50650942 50882224 NC_060929.1 CM021572.2 97.96 True local misassembly 50959592 50962189 50882225 50884438 NC_060929.1 CM021572.2 97.61 True relocation, inconsistency = -40023 50923219 50925344 50885491 50887616 NC_060929.1 CM021572.2 97.13 True local misassembly 50925345 50927629 50887957 50890241 NC_060929.1 CM021572.2 96.98 True local misassembly 50927630 50929772 50890582 50892724 NC_060929.1 CM021572.2 96.97 True local misassembly 50929773 50931986 50893065 50895278 NC_060929.1 CM021572.2 97.02 True local misassembly 50931987 50933758 50895619 50897390 NC_060929.1 CM021572.2 97.29 True indel: indel (<= 5bp) 50933759 50936414 50897392 50900047 NC_060929.1 CM021572.2 97.1 True local misassembly 50936415 50938186 50900388 50902159 NC_060929.1 CM021572.2 97.07 True indel: indel (<= 5bp) 50938187 50938744 50902161 50902718 NC_060929.1 CM021572.2 97.31 True local misassembly 50938745 50940400 50903059 50904714 NC_060929.1 CM021572.2 97.04 True local misassembly 50940843 50942620 50905498 50907275 NC_060929.1 CM021572.2 97.08 True local misassembly 50943056 50944827 50908052 50909823 NC_060929.1 CM021572.2 97.07 True local misassembly 50945270 50947041 50910607 50912378 NC_060929.1 CM021572.2 97.35 True local misassembly 50947484 50949255 50913162 50914933 NC_060929.1 CM021572.2 96.67 True local misassembly 50949698 50951469 50915717 50917488 NC_060929.1 CM021572.2 97.63 True indel: indel (<= 5bp) 50951470 50952277 50917490 50918297 NC_060929.1 CM021572.2 97.15 True local misassembly 50952934 56523831 50918957 56487693 NC_060929.1 CM021572.2 99.76 True local misassembly 56525048 63418073 56488292 63374118 NC_060929.1 CM021572.2 99.76 True local misassembly 63418279 65290890 63374423 65246889 NC_060929.1 CM021572.2 99.89 True inversion 65290860 65297189 65253172 65246890 NC_060929.1 CM021572.2 99.27 True inversion 65297221 70203199 65253173 70155619 NC_060929.1 CM021572.2 99.79 True local misassembly 70203391 70720636 70155711 70673430 NC_060929.1 CM021572.2 99.72 True relocation, inconsistency = -20465 70700172 70944284 70673431 70917834 NC_060929.1 CM021572.2 99.64 True local misassembly 70944620 70971317 70917903 70944594 NC_060929.1 CM021572.2 99.71 True relocation, inconsistency = -36590685 34380633 34421473 70944595 70985463 NC_060929.1 CM021572.2 97.39 True relocation, inconsistency = 36549844 70971318 71673039 70985464 71687103 NC_060929.1 CM021572.2 99.84 True relocation, inconsistency = 24550 71697590 71818413 71687104 71807891 NC_060929.1 CM021572.2 99.7 True indel: indel (> 5bp) 71818582 79611841 71808024 79601043 NC_060929.1 CM021572.2 99.8 True local misassembly 79614359 80085903 79601044 80072304 NC_060929.1 CM021572.2 99.9 True indel: indel (> 5bp) 80085953 80265911 80072362 80252717 NC_060929.1 CM021572.2 99.68 True indel: stretch of mismatches 80265912 81176937 80252718 81162925 NC_060929.1 CM021572.2 99.6 True indel: indel (> 5bp) 81177117 86339330 81163048 86322093 NC_060929.1 CM021572.2 99.71 True indel: indel (> 5bp) 86339804 95092471 86322573 95077003 NC_060929.1 CM021572.2 99.86 True local misassembly 95092892 98374410 95077057 98359541 NC_060929.1 CM021572.2 99.78 True local misassembly 98374508 98733634 98359764 98717681 NC_060929.1 CM021572.2 99.25 True local misassembly 98734916 100021444 98719226 100008641 NC_060929.1 CM021572.2 99.62 True local misassembly 100020256 100793622 100009091 100780332 NC_060929.1 CM021572.2 99.33 True local misassembly 100795264 100846606 100780476 100831818 NC_060929.1 CM021572.2 99.74 True indel: indel (> 5bp) 100846657 100897772 100831819 100882997 NC_060929.1 CM021572.2 99.55 True local misassembly 100899411 101595261 100882998 101578902 NC_060929.1 CM021572.2 99.91 True local misassembly 101595398 101669625 101579169 101653553 NC_060929.1 CM021572.2 99.56 True local misassembly 101669939 105170750 101653688 105153237 NC_060929.1 CM021572.2 99.69 True indel: indel (> 5bp) 105170828 107068661 105153379 107051344 NC_060929.1 CM021572.2 99.89 True local misassembly 107068913 115131234 107051361 115115758 NC_060929.1 CM021572.2 99.78 True indel: indel (> 5bp) 115131493 115457299 115116061 115441785 NC_060929.1 CM021572.2 99.83 True local misassembly 115457727 115502759 115442041 115487080 NC_060929.1 CM021572.2 99.73 True relocation, inconsistency = 9637 115512397 118625970 115487081 118599964 NC_060929.1 CM021572.2 99.68 True indel: indel (> 5bp) 118626062 119051169 118600016 119024775 NC_060929.1 CM021572.2 99.67 True local misassembly 119057410 122895312 119031400 122866840 NC_060929.1 CM021572.2 99.6 True indel: stretch of mismatches 122895711 127259541 122867239 127230300 NC_060929.1 CM021572.2 99.65 True indel: indel (> 5bp) 127259885 127767078 127230708 127738006 NC_060929.1 CM021572.2 99.67 True indel: indel (> 5bp) 127767240 131797801 127738139 131771420 NC_060929.1 CM021572.2 99.59 True local misassembly 131798229 136307405 131771671 136278833 NC_060929.1 CM021572.2 99.78 True local misassembly 136307384 139266976 136284352 139237407 NC_060929.1 CM021572.2 99.62 True indel: indel (> 5bp) 139267087 144505171 139237532 144468101 NC_060929.1 CM021572.2 99.7 True indel: indel (> 5bp) 144505225 145474202 144468115 145436921 NC_060929.1 CM021572.2 99.88 True local misassembly 145474597 149904843 145437119 149866092 NC_060929.1 CM021572.2 99.74 True indel: indel (> 5bp) 149904931 150186238 149866148 150147474 NC_060929.1 CM021572.2 99.45 True local misassembly 150186865 151360098 150147854 151319924 NC_060929.1 CM021572.2 99.74 True relocation, inconsistency = 20094 151380200 151949140 151319932 151886416 NC_060929.1 CM021572.2 99.33 True local misassembly 151952034 155566158 151886417 155503339 NC_060929.1 CM021572.2 99.65 True local misassembly 155567097 156711646 155504311 156647986 NC_060929.1 CM021572.2 99.75 True fake: not a misassembly (possible transposable element) 156588196 156590097 156648047 156649949 NC_060929.1 CM021572.2 96.11 True fake: not a misassembly (possible transposable element) 156711633 163315779 156651284 163250060 NC_060929.1 CM021572.2 99.68 True local misassembly 163316509 163948852 163250719 163883147 NC_060929.1 CM021572.2 99.67 True local misassembly 163948822 164915060 163883204 164850891 NC_060929.1 CM021572.2 99.64 True indel: indel (> 5bp) 164915258 165475155 164851021 165410698 NC_060929.1 CM021572.2 99.83 True local misassembly 165475363 166006314 165410725 165941527 NC_060929.1 CM021572.2 99.71 True indel: indel (> 5bp) 166006336 170509903 165941555 170442753 NC_060929.1 CM021572.2 99.75 True indel: indel (<= 5bp) 170509923 171293149 170442770 171225616 NC_060929.1 CM021572.2 99.77 True local misassembly 171294283 171373871 171226162 171305753 NC_060929.1 CM021572.2 99.56 True indel: indel (> 5bp) 171374195 173047868 171306160 172979977 NC_060929.1 CM021572.2 99.83 True indel: indel (<= 5bp) 173047937 173738868 172980048 173670840 NC_060929.1 CM021572.2 99.68 True indel: indel (> 5bp) 173738854 174910868 173670863 174841918 NC_060929.1 CM021572.2 99.72 True indel: indel (> 5bp) 174910916 175284973 174841940 175217793 NC_060929.1 CM021572.2 99.24 True local misassembly 175286360 176574361 175220161 176508475 NC_060929.1 CM021572.2 99.77 True indel: indel (> 5bp) 176574744 177640124 176508880 177572879 NC_060929.1 CM021572.2 99.66 True local misassembly 177640210 178569477 177573091 178503608 NC_060929.1 CM021572.2 99.56 True local misassembly 178571596 179308266 178503609 179251545 NC_060929.1 CM021572.2 98.16 True local misassembly 179308958 179965273 179252100 179908233 NC_060929.1 CM021572.2 99.55 True indel: indel (> 5bp) 179965320 180103177 179908234 180045904 NC_060929.1 CM021572.2 99.51 True indel: indel (> 5bp) 180103246 180183587 180045940 180126251 NC_060929.1 CM021572.2 99.56 True local misassembly 180184316 180384889 180126252 180326873 NC_060929.1 CM021572.2 99.6 True indel: stretch of mismatches 180384912 181887744 180326896 181832129 NC_060929.1 CM021572.2 99.5 True local misassembly 181884328 182044072 181832130 181992515 NC_060929.1 CM021572.2 99.57 True CONTIG CM021572.2 181993881 misassembled 2876 359539 2873 360683 NC_060930.1 CM021573.2 99.08 True indel: indel (> 5bp) 359613 377419 360709 378478 NC_060930.1 CM021573.2 98.97 True local misassembly 378466 1113807 378479 1114808 NC_060930.1 CM021573.2 99.34 True local misassembly 1114406 1404856 1114809 1405788 NC_060930.1 CM021573.2 99.13 True local misassembly 1405055 1768748 1405897 1769046 NC_060930.1 CM021573.2 99.66 True local misassembly 1768932 2560114 1769097 2560589 NC_060930.1 CM021573.2 99.79 True indel: indel (> 5bp) 2560283 2727381 2560686 2727499 NC_060930.1 CM021573.2 99.45 True indel: indel (> 5bp) 2727454 3012969 2727538 3012757 NC_060930.1 CM021573.2 99.79 True local misassembly 3013192 3089740 3014120 3090662 NC_060930.1 CM021573.2 99.55 True local misassembly 3090398 4764111 3091708 4765836 NC_060930.1 CM021573.2 99.78 True indel: indel (> 5bp) 4764481 4904549 4766132 4906183 NC_060930.1 CM021573.2 99.73 True local misassembly 4904783 5704897 4906524 5704613 NC_060930.1 CM021573.2 99.55 True local misassembly 5705181 6406607 5705177 6406473 NC_060930.1 CM021573.2 99.66 True local misassembly 6406645 6801942 6407358 6803143 NC_060930.1 CM021573.2 99.56 True indel: indel (> 5bp) 6802009 7311437 6803218 7312577 NC_060930.1 CM021573.2 99.63 True indel: indel (<= 5bp) 7311838 12035917 7312975 12037799 NC_060930.1 CM021573.2 99.7 True indel: indel (> 5bp) 12035966 13064148 12037800 13065967 NC_060930.1 CM021573.2 99.83 True fake: not a misassembly (possible transposable element) 67510710 67516761 13065968 13072015 NC_060941.1 CM021573.2 99.94 True fake: not a misassembly (possible transposable element) 13064131 13282234 13072016 13290099 NC_060930.1 CM021573.2 99.92 True indel: stretch of mismatches 13282235 15539664 13290100 15547336 NC_060930.1 CM021573.2 99.79 True local misassembly 15539829 18719555 15548406 18729634 NC_060930.1 CM021573.2 99.7 True indel: indel (> 5bp) 18719717 22952673 18729788 22962534 NC_060930.1 CM021573.2 99.73 True indel: indel (> 5bp) 22952709 24110037 22962561 24119740 NC_060930.1 CM021573.2 99.74 True local misassembly 24110521 24197541 24120330 24207431 NC_060930.1 CM021573.2 99.68 True local misassembly 24197537 25072203 24209883 25083353 NC_060930.1 CM021573.2 99.67 True indel: indel (> 5bp) 25072284 26479456 25083499 26490220 NC_060930.1 CM021573.2 99.8 True local misassembly 26486241 26594949 26490221 26598894 NC_060930.1 CM021573.2 99.63 True indel: indel (<= 5bp) 26595082 26616645 26599028 26620608 NC_060930.1 CM021573.2 99.54 True relocation, inconsistency = 21957 26638603 26643340 26620609 26625367 NC_060930.1 CM021573.2 99.41 True indel: indel (<= 5bp) 26643473 28584959 26625501 28566583 NC_060930.1 CM021573.2 99.74 True local misassembly 28587350 30891219 28567730 30870587 NC_060930.1 CM021573.2 99.79 True local misassembly 30893578 31093263 30871872 31071791 NC_060930.1 CM021573.2 98.99 True local misassembly 31094405 31177309 31071792 31154723 NC_060930.1 CM021573.2 98.96 True relocation, inconsistency = -9688 31177354 31186202 31164456 31173289 NC_060930.1 CM021573.2 97.57 True indel: stretch of mismatches 31186283 31195636 31173370 31182718 NC_060930.1 CM021573.2 98.51 True indel: indel (> 5bp) 31195969 31196989 31183059 31184082 NC_060930.1 CM021573.2 95.41 True local misassembly 31199484 31283804 31186357 31270644 NC_060930.1 CM021573.2 98.49 True local misassembly 31285194 32301567 31271889 32290749 NC_060930.1 CM021573.2 99.46 True local misassembly 32302103 32335909 32291382 32325050 NC_060930.1 CM021573.2 97.76 True relocation, inconsistency = -11466 32359615 32360893 32360222 32361499 NC_060930.1 CM021573.2 96.64 True local misassembly 32373167 32374621 32367730 32369184 NC_060930.1 CM021573.2 95.62 True local misassembly 32377167 32378731 32372086 32373635 NC_060930.1 CM021573.2 96.49 True local misassembly 32379054 32379616 32377009 32377570 NC_060930.1 CM021573.2 97.69 True indel: indel (<= 5bp) 32379840 32380863 32377796 32378809 NC_060930.1 CM021573.2 96.29 True local misassembly 32383703 32384408 32381629 32382334 NC_060930.1 CM021573.2 97.17 True relocation, inconsistency = -65314 32330964 32331534 32394204 32394774 NC_060930.1 CM021573.2 97.37 True local misassembly 32333013 32334218 32396240 32397447 NC_060930.1 CM021573.2 96.27 True indel: indel (<= 5bp) 32334429 32335316 32397656 32398543 NC_060930.1 CM021573.2 96.28 True relocation, inconsistency = 61192 32410845 32411705 32412880 32413740 NC_060930.1 CM021573.2 96.05 True indel: indel (> 5bp) 32412036 32412633 32414093 32414690 NC_060930.1 CM021573.2 95.32 True local misassembly 32414203 32424755 32416207 32426775 NC_060930.1 CM021573.2 97.95 True local misassembly 32424833 32454968 32427166 32457270 NC_060930.1 CM021573.2 98.43 True indel: indel (<= 5bp) 32454993 32463181 32457296 32465456 NC_060930.1 CM021573.2 97.06 True indel: indel (> 5bp) 32463293 32464745 32465554 32467016 NC_060930.1 CM021573.2 95.15 True local misassembly 32470524 32471424 32472674 32473574 NC_060930.1 CM021573.2 96.12 True local misassembly 32481116 32481616 32489339 32489839 NC_060930.1 CM021573.2 96.21 True local misassembly 32490776 32491873 32498840 32499931 NC_060930.1 CM021573.2 95.54 True local misassembly 32492798 32493449 32500857 32501508 NC_060930.1 CM021573.2 96.47 True relocation, inconsistency = -7948 32495596 32501189 32511603 32517186 NC_060930.1 CM021573.2 95.01 True indel: indel (<= 5bp) 32501283 32503168 32517279 32519159 NC_060930.1 CM021573.2 95.03 True local misassembly 32510563 32526645 32519857 32535998 NC_060930.1 CM021573.2 97.24 True local misassembly 32527152 32528314 32536504 32537666 NC_060930.1 CM021573.2 97.42 True local misassembly 32528849 32529811 32538201 32539163 NC_060930.1 CM021573.2 97.2 True indel: indel (<= 5bp) 32529812 32531374 32539165 32540727 NC_060930.1 CM021573.2 96.61 True local misassembly 32534251 32535159 32543611 32544519 NC_060930.1 CM021573.2 97.25 True indel: indel (<= 5bp) 32535162 32536152 32544520 32545510 NC_060930.1 CM021573.2 98.89 True local misassembly 32536813 32537565 32546172 32546924 NC_060930.1 CM021573.2 99.6 True indel: indel (> 5bp) 32537574 32540818 32546925 32550169 NC_060930.1 CM021573.2 99.11 True indel: indel (<= 5bp) 32540886 32541484 32550234 32550832 NC_060930.1 CM021573.2 96.66 True local misassembly 32542083 32542596 32551131 32551644 NC_060930.1 CM021573.2 98.25 True local misassembly 32544751 32545382 32553446 32554077 NC_060930.1 CM021573.2 95.89 True local misassembly 32546551 33436609 32555244 33445130 NC_060930.1 CM021573.2 99.58 True local misassembly 33439258 35619358 33445131 35628033 NC_060930.1 CM021573.2 99.65 True relocation, inconsistency = -12222 35607137 39753571 35628034 39771367 NC_060930.1 CM021573.2 99.72 True indel: indel (> 5bp) 39753842 40037079 39771569 40054175 NC_060930.1 CM021573.2 99.59 True local misassembly 40037364 41962018 40054350 41980373 NC_060930.1 CM021573.2 99.75 True indel: indel (> 5bp) 41962060 49764444 41980402 49780034 NC_060930.1 CM021573.2 99.74 True local misassembly 49764959 51717837 49780263 51732010 NC_060930.1 CM021573.2 99.78 True fake: not a misassembly (possible transposable element) 118865588 118871601 51732022 51738033 NC_060925.1 CM021573.2 99.62 True fake: not a misassembly (possible transposable element) 51717839 53903837 51738049 53924456 NC_060930.1 CM021573.2 99.78 True local misassembly 53909980 55937942 53924605 55952414 NC_060930.1 CM021573.2 99.8 True local misassembly 55939145 56165970 55953624 56180462 NC_060930.1 CM021573.2 99.64 True local misassembly 56166581 58562048 56181003 58578736 NC_060930.1 CM021573.2 99.7 True relocation, inconsistency = -23947 58538102 58548749 58578737 58589383 NC_060930.1 CM021573.2 98.54 True relocation, inconsistency = -228796 58319955 58410292 58589385 58679374 NC_060930.1 CM021573.2 97.81 True local misassembly 58404770 58426071 58679964 58701269 NC_060930.1 CM021573.2 98.97 True relocation, inconsistency = 193294 58619366 58629841 58701270 58711745 NC_060930.1 CM021573.2 99.8 True relocation, inconsistency = 24452 58654908 58662961 58712360 58720413 NC_060930.1 CM021573.2 99.95 True relocation, inconsistency = -24452 58639623 58650735 58721527 58732639 NC_060930.1 CM021573.2 99.92 True relocation, inconsistency = -297225 58353511 58377935 58732640 58757056 NC_060930.1 CM021573.2 98.06 True relocation, inconsistency = 157446 58535382 58537471 58757057 58759146 NC_060930.1 CM021573.2 98.81 True local misassembly 58538002 58543606 58759505 58765109 NC_060930.1 CM021573.2 98.78 True relocation, inconsistency = 139605 58683212 58693132 58765110 58775030 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 58693133 58704752 58775031 58786650 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 58704753 58710233 58786651 58792131 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 58710234 58746697 58792132 58828595 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 58746698 58753737 58828596 58835635 NC_060930.1 CM021573.2 100.0 True local misassembly 58754271 58761029 58836169 58842927 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 58761030 58780683 58842928 58862581 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 58780684 58787888 58862582 58869786 NC_060930.1 CM021573.2 99.96 True indel: stretch of mismatches 58787889 58796047 58869787 58877945 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 58796048 58815845 58877946 58897743 NC_060930.1 CM021573.2 99.99 True relocation, inconsistency = -471478 58344368 58404450 58897744 58957196 NC_060930.1 CM021573.2 95.76 True relocation, inconsistency = -41269 58363259 58368203 58957274 58962216 NC_060930.1 CM021573.2 97.56 True local misassembly 58375166 58380433 58962217 58967485 NC_060930.1 CM021573.2 98.4 True relocation, inconsistency = -23616 58356818 58374614 58967486 58985062 NC_060930.1 CM021573.2 96.59 True relocation, inconsistency = 549942 58924557 58927346 58985063 58987852 NC_060930.1 CM021573.2 98.17 True indel: stretch of mismatches 58927347 58963785 58987853 59024291 NC_060930.1 CM021573.2 99.98 True local misassembly 58965814 58972564 59026317 59033067 NC_060930.1 CM021573.2 99.99 True local misassembly 58973558 58989697 59034061 59050200 NC_060930.1 CM021573.2 99.98 True local misassembly 58991077 58994043 59051580 59054546 NC_060930.1 CM021573.2 99.59 True indel: stretch of mismatches 58994044 59006863 59054547 59067366 NC_060930.1 CM021573.2 99.79 True fake: not a misassembly (possible transposable element) 58364318 58366056 59067367 59069103 NC_060930.1 CM021573.2 97.79 True fake: not a misassembly (possible transposable element) 59010748 59026038 59071251 59086541 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 59026039 59029338 59086542 59089841 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 59029339 59043231 59089842 59103734 NC_060930.1 CM021573.2 99.99 True local misassembly 59043869 59051925 59104372 59112428 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59051926 59056328 59112429 59116831 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 58430758 58435493 59116832 59121570 NC_060930.1 CM021573.2 99.49 True fake: not a misassembly (possible transposable element) 59064256 59076960 59124759 59137463 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59076961 59104767 59137464 59165270 NC_060930.1 CM021573.2 99.93 True indel: stretch of mismatches 59104918 59111277 59165421 59171780 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59111278 59121616 59171781 59182119 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59121617 59122493 59182120 59182996 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59122494 59134336 59182997 59194839 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59134337 59137797 59194840 59198300 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59137798 59150168 59198301 59210671 NC_060930.1 CM021573.2 99.95 True indel: stretch of mismatches 59150169 59164312 59210672 59224815 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59164313 59178381 59224816 59238884 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59178382 59212848 59238885 59273351 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 59212849 59222231 59273352 59282734 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59222232 59235315 59282735 59295818 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59235316 59246025 59295819 59306528 NC_060930.1 CM021573.2 100.0 True local misassembly 59247631 59266867 59308134 59327370 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59266868 59271132 59327371 59331635 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 420081 59691214 59708906 59331636 59349328 NC_060930.1 CM021573.2 99.98 True relocation, inconsistency = -24978 59684492 59689536 59349892 59354936 NC_060930.1 CM021573.2 99.98 True relocation, inconsistency = -395103 59296586 59311253 59357089 59371756 NC_060930.1 CM021573.2 100.0 True local misassembly 59311817 59322457 59372320 59382960 NC_060930.1 CM021573.2 100.0 True local misassembly 59323033 59326273 59383536 59386776 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 386437 59712711 59721835 59386777 59395901 NC_060930.1 CM021573.2 99.99 True relocation, inconsistency = -386437 59335399 59345753 59395902 59406256 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -17330 59328424 59335829 59406257 59413662 NC_060930.1 CM021573.2 99.94 True relocation, inconsistency = 17330 59353160 59365288 59413663 59425791 NC_060930.1 CM021573.2 100.0 True local misassembly 59368304 59373281 59428807 59433784 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59373282 59385270 59433785 59445773 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59385271 59401725 59445774 59462228 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59401726 59406049 59462229 59466552 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59406050 59419714 59466553 59480217 NC_060930.1 CM021573.2 99.99 True relocation, inconsistency = 407855 59827570 59831598 59480218 59484246 NC_060930.1 CM021573.2 99.96 True relocation, inconsistency = -399696 59431940 59440098 59484284 59492442 NC_060930.1 CM021573.2 99.99 True relocation, inconsistency = 350238 59790337 59800037 59492443 59502143 NC_060930.1 CM021573.2 99.97 True relocation, inconsistency = -358397 59441641 59445706 59502144 59506209 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 59445707 59451314 59506210 59511817 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 649414 60100729 60108850 59511818 59519939 NC_060930.1 CM021573.2 99.89 True relocation, inconsistency = -649414 59459474 59464747 59519977 59525250 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59464748 59468004 59525251 59528507 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 59468005 59475286 59528508 59535789 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59827570 59830148 59535790 59538368 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59477866 59484863 59538369 59545366 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59485107 59503133 59545610 59563636 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59503134 59511583 59563637 59572086 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59511584 59512975 59572087 59573478 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59512976 59575363 59573479 59635866 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59575364 59588624 59635867 59649127 NC_060930.1 CM021573.2 100.0 True local misassembly 59589502 59599195 59650005 59659698 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -461398 59137798 59151297 59659699 59673198 NC_060930.1 CM021573.2 99.98 True relocation, inconsistency = 461398 59615507 59646873 59676010 59707376 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59646874 59689536 59707377 59750039 NC_060930.1 CM021573.2 99.99 True local misassembly 59691214 59708906 59751717 59769409 NC_060930.1 CM021573.2 100.0 True local misassembly 59709470 59720548 59769973 59781051 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59720549 59734395 59781052 59794898 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59734396 59743623 59794899 59804126 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 59743624 59757333 59804127 59817836 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59757334 59768043 59817837 59828546 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -366556 59401488 59406049 59828547 59833108 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 59406050 59419714 59833109 59846773 NC_060930.1 CM021573.2 99.98 True relocation, inconsistency = 366556 59786271 59790299 59846774 59850802 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59790337 59800037 59850840 59860540 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 59800038 59805645 59860541 59866148 NC_060930.1 CM021573.2 100.0 True local misassembly 59806655 59814776 59867158 59875279 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59792895 59798161 59875324 59880590 NC_060930.1 CM021573.2 99.79 True fake: not a misassembly (possible transposable element) 59820288 59827569 59880791 59888072 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59827570 59829105 59888073 59889608 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59829106 59836848 59889609 59897351 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59837244 59850001 59897747 59910504 NC_060930.1 CM021573.2 99.99 True local misassembly 59852538 59859377 59913041 59919880 NC_060930.1 CM021573.2 100.0 True local misassembly 59863344 59871508 59923847 59932011 NC_060930.1 CM021573.2 99.99 True fake: not a misassembly (possible transposable element) 60250692 60253730 59934581 59937619 NC_060930.1 CM021573.2 99.87 True fake: not a misassembly (possible transposable element) 59877238 59914833 59937741 59975336 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59914834 59917778 59975337 59978281 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 59917779 59931662 59978282 59992165 NC_060930.1 CM021573.2 100.0 True local misassembly 59935349 59946441 59995852 60006944 NC_060930.1 CM021573.2 99.95 True fake: not a misassembly (possible transposable element) 60126916 60131936 60012622 60017642 NC_060930.1 CM021573.2 99.88 True fake: not a misassembly (possible transposable element) 59983702 59988795 60044205 60049298 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -1633061 58360259 58391344 60053823 60084907 NC_060930.1 CM021573.2 98.44 True relocation, inconsistency = 1026445 59426339 59431544 60093457 60098662 NC_060930.1 CM021573.2 99.79 True relocation, inconsistency = 493488 59925435 59928767 60099065 60102399 NC_060930.1 CM021573.2 99.71 True relocation, inconsistency = 113130 60041898 60048646 60102400 60109148 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59451315 59454255 60113837 60116777 NC_060930.1 CM021573.2 99.85 True fake: not a misassembly (possible transposable element) 60056276 60061315 60116778 60121817 NC_060930.1 CM021573.2 99.96 True fake: not a misassembly (possible transposable element) 59426339 59431544 60122509 60127714 NC_060930.1 CM021573.2 99.81 True fake: not a misassembly (possible transposable element) 60070018 60076383 60130520 60136885 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -289499 59786903 59790299 60136904 60140300 NC_060930.1 CM021573.2 99.94 True relocation, inconsistency = 529017 60319354 60325431 60140338 60146415 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -857329 59470313 59474204 60148626 60152519 NC_060930.1 CM021573.2 99.8 True relocation, inconsistency = 617813 60092018 60097079 60152520 60157581 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 60321528 60324924 60157797 60161193 NC_060930.1 CM021573.2 99.88 True fake: not a misassembly (possible transposable element) 60100729 60110965 60161231 60171467 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60110966 60115124 60171468 60175626 NC_060930.1 CM021573.2 100.0 True local misassembly 60117203 60123121 60177705 60183623 NC_060930.1 CM021573.2 100.0 True local misassembly 60126724 60130894 60187226 60191396 NC_060930.1 CM021573.2 99.98 True fake: not a misassembly (possible transposable element) 60367862 60374738 60191397 60198273 NC_060930.1 CM021573.2 99.96 True fake: not a misassembly (possible transposable element) 60141965 60150153 60202467 60210655 NC_060930.1 CM021573.2 100.0 True local misassembly 60157758 60163844 60218260 60224346 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 240024 60404109 60409755 60224587 60230233 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 92251 60537468 60542680 60265695 60270907 NC_060930.1 CM021573.2 99.9 True relocation, inconsistency = 116693 60659769 60664980 60271303 60276515 NC_060930.1 CM021573.2 99.96 True relocation, inconsistency = -448967 60219255 60224289 60279757 60284791 NC_060930.1 CM021573.2 99.98 True relocation, inconsistency = -382728 59842852 59848064 60286082 60291294 NC_060930.1 CM021573.2 99.79 True relocation, inconsistency = -402753 59445707 59450919 60291690 60296902 NC_060930.1 CM021573.2 99.73 True relocation, inconsistency = 1211005 60661943 60664260 60296921 60299239 NC_060930.1 CM021573.2 99.8 True relocation, inconsistency = -168169 60496092 60502419 60299240 60305567 NC_060930.1 CM021573.2 99.95 True relocation, inconsistency = -262962 60239853 60245065 60305963 60311175 NC_060930.1 CM021573.2 99.96 True relocation, inconsistency = -204354 60040730 60043768 60311194 60314232 NC_060930.1 CM021573.2 99.84 True relocation, inconsistency = -225262 59837244 59842456 60332970 60338182 NC_060930.1 CM021573.2 99.79 True relocation, inconsistency = -369107 59473745 59478957 60338578 60343790 NC_060930.1 CM021573.2 99.83 True relocation, inconsistency = 804331 60292855 60300833 60353357 60361335 NC_060930.1 CM021573.2 99.97 True fake: not a misassembly (possible transposable element) 59426339 59431544 60362027 60367232 NC_060930.1 CM021573.2 99.81 True fake: not a misassembly (possible transposable element) 60308538 60319316 60369040 60379818 NC_060930.1 CM021573.2 99.99 True fake: not a misassembly (possible transposable element) 60340247 60346324 60379856 60385933 NC_060930.1 CM021573.2 99.95 True fake: not a misassembly (possible transposable element) 60325468 60331038 60385970 60391540 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59453489 59456089 60397315 60399915 NC_060930.1 CM021573.2 99.85 True fake: not a misassembly (possible transposable element) 60340087 60346324 60400589 60406826 NC_060930.1 CM021573.2 99.98 True fake: not a misassembly (possible transposable element) 59793358 59799033 60406827 60412502 NC_060930.1 CM021573.2 99.84 True fake: not a misassembly (possible transposable element) 60352001 60359198 60412503 60419700 NC_060930.1 CM021573.2 99.96 True local misassembly 60363691 60374738 60424193 60435240 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -236967 60141965 60150153 60439434 60447622 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 236967 60397392 60402789 60457894 60463291 NC_060930.1 CM021573.2 100.0 True local misassembly 60404109 60409755 60464611 60470257 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -1450684 58996362 58999307 60507548 60510493 NC_060930.1 CM021573.2 99.66 True relocation, inconsistency = 1497066 60497207 60502419 60511327 60516539 NC_060930.1 CM021573.2 99.85 True relocation, inconsistency = 142175 60654161 60659373 60526106 60531318 NC_060930.1 CM021573.2 99.94 True relocation, inconsistency = 268056 60927825 60933006 60531714 60536926 NC_060930.1 CM021573.2 99.23 True relocation, inconsistency = -52434 60887082 60892263 60543436 60548648 NC_060930.1 CM021573.2 99.29 True relocation, inconsistency = -667079 60225580 60230792 60549044 60554256 NC_060930.1 CM021573.2 99.96 True relocation, inconsistency = -782930 59447881 59450199 60554275 60556593 NC_060930.1 CM021573.2 99.64 True relocation, inconsistency = 1045892 60496092 60502419 60556594 60562921 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -183461 60319354 60321962 60563317 60565925 NC_060930.1 CM021573.2 99.77 True relocation, inconsistency = -1949527 58372436 58377735 60565926 60571225 NC_060930.1 CM021573.2 98.3 True relocation, inconsistency = 127556 58505321 58520268 60571255 60586202 NC_060930.1 CM021573.2 99.0 True relocation, inconsistency = -150997 58369272 58378083 60586203 60595012 NC_060930.1 CM021573.2 98.19 True relocation, inconsistency = 2156429 60534720 60543392 60595220 60603892 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59445906 59450919 60609383 60614396 NC_060930.1 CM021573.2 99.8 True fake: not a misassembly (possible transposable element) 60559416 60565618 60619916 60626118 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60565619 60569898 60626119 60630398 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 60608080 60612471 60650238 60654629 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 60594130 60600862 60654630 60661362 NC_060930.1 CM021573.2 100.0 True local misassembly 60608080 60612471 60668580 60672971 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60612472 60619204 60672972 60679704 NC_060930.1 CM021573.2 100.0 True local misassembly 60633268 60638488 60693768 60698988 NC_060930.1 CM021573.2 99.98 True local misassembly 60654161 60661460 60714661 60721960 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60661461 60666515 60721961 60727015 NC_060930.1 CM021573.2 100.0 True local misassembly 60680661 60687167 60741161 60747667 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60687168 60689326 60747668 60749826 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 60689327 60693819 60749827 60754319 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 60693820 60703738 60754320 60764238 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60704030 60715162 60764530 60775662 NC_060930.1 CM021573.2 100.0 True local misassembly 60718164 60723079 60778664 60783579 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 60723080 60728356 60783580 60788856 NC_060930.1 CM021573.2 99.98 True indel: stretch of mismatches 60728357 60752162 60788857 60812662 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60752163 60765423 60812663 60825923 NC_060930.1 CM021573.2 100.0 True local misassembly 60775202 60782528 60835702 60843028 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 59551117 59553426 60843029 60845338 NC_060930.1 CM021573.2 99.73 True fake: not a misassembly (possible transposable element) 60794860 60800785 60855360 60861285 NC_060930.1 CM021573.2 100.0 True local misassembly 60804014 60815143 60864514 60875643 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -2448968 58368920 58377835 60878388 60887301 NC_060930.1 CM021573.2 97.93 True relocation, inconsistency = -30069 58347767 58377421 60887302 60916948 NC_060930.1 CM021573.2 98.03 True relocation, inconsistency = 2479033 60876059 60881666 60936553 60942160 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 60881667 60888719 60942161 60949213 NC_060930.1 CM021573.2 99.97 True indel: stretch of mismatches 60888720 60892612 60949214 60953106 NC_060930.1 CM021573.2 99.98 True local misassembly 60895716 60907992 60956210 60968486 NC_060930.1 CM021573.2 100.0 True local misassembly 60913552 60929265 60974046 60989759 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 60929266 60933831 60989760 60994325 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 60933832 60940998 60994326 61001492 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 60996046 60999699 61001493 61005146 NC_060930.1 CM021573.2 99.86 True fake: not a misassembly (possible transposable element) 60944653 60950138 61005147 61010632 NC_060930.1 CM021573.2 100.0 True local misassembly 60951253 60960526 61011747 61021020 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -207879 60752648 60755304 61021021 61023677 NC_060930.1 CM021573.2 99.91 True relocation, inconsistency = 225209 60980514 60986944 61023678 61030108 NC_060930.1 CM021573.2 99.92 True relocation, inconsistency = -17330 60969615 60973583 61030109 61034077 NC_060930.1 CM021573.2 100.0 True local misassembly 60974606 60980513 61035100 61041007 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 60980514 60990001 61041008 61050495 NC_060930.1 CM021573.2 100.0 True local misassembly 60994072 60997626 61054566 61058120 NC_060930.1 CM021573.2 99.99 True relocation, inconsistency = -1448968 59548659 59558769 61058121 61068231 NC_060930.1 CM021573.2 99.63 True relocation, inconsistency = 1448968 61007738 61013345 61068232 61073839 NC_060930.1 CM021573.2 100.0 True local misassembly 61016623 61028032 61077117 61088526 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = -24983 61003050 61006018 61088527 61091495 NC_060930.1 CM021573.2 99.99 True indel: stretch of mismatches 61006019 61013345 61091496 61098822 NC_060930.1 CM021573.2 100.0 True relocation, inconsistency = 24983 61041978 61051358 61102472 61111852 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 58365777 58369465 61112697 61116385 NC_060930.1 CM021573.2 98.11 True fake: not a misassembly (possible transposable element) 61055892 61090644 61116386 61151210 NC_060930.1 CM021573.2 98.84 True indel: indel (<= 5bp) 61090748 61092510 61151310 61153075 NC_060930.1 CM021573.2 99.38 True indel: stretch of mismatches 61092667 61094023 61153232 61154588 NC_060930.1 CM021573.2 100.0 True indel: indel (<= 5bp) 61094177 61102210 61154740 61162774 NC_060930.1 CM021573.2 99.3 True local misassembly 61103308 61104426 61163874 61164992 NC_060930.1 CM021573.2 100.0 True indel: stretch of mismatches 61104646 61105740 61165212 61166306 NC_060930.1 CM021573.2 100.0 True indel: indel (<= 5bp) 61105899 61117171 61166463 61177735 NC_060930.1 CM021573.2 100.0 True fake: not a misassembly (possible transposable element) 61099915 61102210 61177736 61180029 NC_060930.1 CM021573.2 99.26 True fake: not a misassembly (possible transposable element) 61120416 61137676 61180986 61197917 NC_060930.1 CM021573.2 97.48 True local misassembly 61146198 61153087 61204049 61211105 NC_060930.1 CM021573.2 96.9 True local misassembly 61152882 61246353 61211751 61305384 NC_060930.1 CM021573.2 99.16 True local misassembly 61247203 61323020 61305385 61381574 NC_060930.1 CM021573.2 99.02 True relocation, inconsistency = -9804 61323008 61342997 61391366 61412138 NC_060930.1 CM021573.2 95.27 True local misassembly 61356205 61371926 61425229 61440628 NC_060930.1 CM021573.2 97.37 True local misassembly 61371501 61381746 61441902 61452147 NC_060930.1 CM021573.2 99.73 True local misassembly 61381599 61383460 61456253 61458114 NC_060930.1 CM021573.2 98.87 True indel: indel (<= 5bp) 61383807 61591863 61458458 61666662 NC_060930.1 CM021573.2 99.64 True relocation, inconsistency = -4225462 57366402 57370644 61666663 61670966 NC_060930.1 CM021573.2 96.93 True relocation, inconsistency = 4221228 61591873 61772879 61670967 61851407 NC_060930.1 CM021573.2 99.43 True indel: stretch of mismatches 61772980 61822915 61851508 61901187 NC_060930.1 CM021573.2 99.22 True local misassembly 61827886 64651522 61901188 64722452 NC_060930.1 CM021573.2 99.8 True indel: indel (<= 5bp) 64651611 66596589 64722540 66667134 NC_060930.1 CM021573.2 99.87 True local misassembly 66597139 66906814 66667931 66978162 NC_060930.1 CM021573.2 99.44 True local misassembly 66907608 67003808 66978163 67074393 NC_060930.1 CM021573.2 99.78 True local misassembly 67010388 67175893 67074440 67240607 NC_060930.1 CM021573.2 98.96 True indel: indel (> 5bp) 67176006 68563655 67240710 68630363 NC_060930.1 CM021573.2 99.55 True local misassembly 68564096 68965517 68631276 69032817 NC_060930.1 CM021573.2 99.46 True local misassembly 68965824 69452241 69032980 69519554 NC_060930.1 CM021573.2 99.75 True relocation, inconsistency = 12844 69465086 70745126 69519555 70797795 NC_060930.1 CM021573.2 99.64 True local misassembly 70747085 71101074 70800091 71153975 NC_060930.1 CM021573.2 99.88 True indel: indel (> 5bp) 71101039 72784765 71153976 72837206 NC_060930.1 CM021573.2 99.77 True local misassembly 72784974 73689598 72837325 73745590 NC_060930.1 CM021573.2 98.08 True local misassembly 73689648 77724189 73746431 77773913 NC_060930.1 CM021573.2 99.61 True indel: indel (> 5bp) 77724533 77904579 77774312 77954411 NC_060930.1 CM021573.2 99.83 True relocation, inconsistency = 21778 77926358 84368196 77954412 84392469 NC_060930.1 CM021573.2 99.78 True indel: indel (> 5bp) 84368189 86354451 84392488 86378866 NC_060930.1 CM021573.2 99.88 True indel: indel (> 5bp) 86354483 92174950 86378905 92189198 NC_060930.1 CM021573.2 99.56 True local misassembly 92175574 96671072 92189765 96684166 NC_060930.1 CM021573.2 99.77 True local misassembly 96673042 99126827 96685919 99139412 NC_060930.1 CM021573.2 99.85 True indel: indel (> 5bp) 99126878 102220702 99139427 102233494 NC_060930.1 CM021573.2 99.78 True local misassembly 102222714 102934081 102233495 102945336 NC_060930.1 CM021573.2 99.8 True indel: indel (> 5bp) 102934245 103011610 102945433 103021509 NC_060930.1 CM021573.2 97.84 True indel: indel (<= 5bp) 103011670 104722096 103021565 104732185 NC_060930.1 CM021573.2 99.7 True indel: indel (<= 5bp) 104722126 107658813 104732212 107664988 NC_060930.1 CM021573.2 99.67 True local misassembly 107658515 113457100 107668404 113462184 NC_060930.1 CM021573.2 99.73 True indel: indel (> 5bp) 113457153 119107843 113462266 119114501 NC_060930.1 CM021573.2 99.77 True local misassembly 119109161 121527315 119115379 121533122 NC_060930.1 CM021573.2 99.78 True indel: indel (<= 5bp) 121527417 125164213 121533228 125169078 NC_060930.1 CM021573.2 99.68 True indel: indel (> 5bp) 125164278 130819874 125169221 130812775 NC_060930.1 CM021573.2 99.65 True local misassembly 130820157 130912608 130813273 130905783 NC_060930.1 CM021573.2 99.71 True local misassembly 130912840 133096951 130906329 133090166 NC_060930.1 CM021573.2 99.73 True indel: indel (<= 5bp) 133097052 135875814 133090263 135869519 NC_060930.1 CM021573.2 99.74 True local misassembly 135876366 140470542 135870044 140464380 NC_060930.1 CM021573.2 99.85 True local misassembly 140469907 146578600 140467972 146574800 NC_060930.1 CM021573.2 99.8 True local misassembly 146578596 152149318 146575850 152146830 NC_060930.1 CM021573.2 99.77 True indel: stretch of mismatches 152149408 159017610 152146920 159011680 NC_060930.1 CM021573.2 99.7 True local misassembly 159020113 160897877 159016327 160896723 NC_060930.1 CM021573.2 99.53 True local misassembly 160899118 161870265 160898240 161869255 NC_060930.1 CM021573.2 99.67 True relocation, inconsistency = 49965 161920231 161994205 161869256 161943231 NC_060930.1 CM021573.2 99.6 True fake: not a misassembly (possible transposable element) 161944268 161947781 161943232 161946737 NC_060930.1 CM021573.2 99.49 True fake: not a misassembly (possible transposable element) 161997667 162133590 161946738 162082370 NC_060930.1 CM021573.2 99.56 True relocation, inconsistency = 8833 162142645 162911202 162082592 162849085 NC_060930.1 CM021573.2 99.28 True indel: indel (> 5bp) 162911240 165992910 162849185 165925182 NC_060930.1 CM021573.2 99.36 True local misassembly 165993617 166297308 165925760 166229583 NC_060930.1 CM021573.2 99.68 True local misassembly 166298274 167399607 166230390 167324772 NC_060930.1 CM021573.2 99.1 True indel: indel (> 5bp) 167400126 167659018 167325257 167594169 NC_060930.1 CM021573.2 95.75 True local misassembly 167665755 168026192 167599285 167959115 NC_060930.1 CM021573.2 99.67 True indel: stretch of mismatches 168026264 168127008 167959187 168059811 NC_060930.1 CM021573.2 99.68 True local misassembly 168130979 168769090 168060502 168697552 NC_060930.1 CM021573.2 99.59 True local misassembly 168771488 168772514 168699492 168700518 NC_060930.1 CM021573.2 99.32 True indel: indel (<= 5bp) 168772515 168773914 168700522 168701921 NC_060930.1 CM021573.2 99.64 True indel: indel (> 5bp) 168773948 168774621 168701922 168702595 NC_060930.1 CM021573.2 99.55 True indel: indel (> 5bp) 168774811 168803797 168702868 168731892 NC_060930.1 CM021573.2 98.93 True local misassembly 168804211 168948504 168732201 168875485 NC_060930.1 CM021573.2 97.72 True local misassembly 168949130 169575531 168875968 169501011 NC_060930.1 CM021573.2 98.85 True local misassembly 169580001 169664570 169504617 169588246 NC_060930.1 CM021573.2 98.15 True indel: indel (> 5bp) 169664729 169938430 169588359 169862662 NC_060930.1 CM021573.2 96.85 True local misassembly 169939048 169939873 169862665 169863490 NC_060930.1 CM021573.2 99.64 True local misassembly 169939874 169943384 169863786 169867296 NC_060930.1 CM021573.2 99.72 True indel: indel (> 5bp) 169943703 169944633 169867601 169868531 NC_060930.1 CM021573.2 99.79 True indel: indel (> 5bp) 169944634 169947328 169868543 169871237 NC_060930.1 CM021573.2 99.96 True indel: indel (<= 5bp) 169947455 169951989 169871368 169875902 NC_060930.1 CM021573.2 99.76 True indel: indel (> 5bp) 169952398 169956370 169876267 169880239 NC_060930.1 CM021573.2 99.8 True indel: indel (<= 5bp) 169956371 169957920 169880243 169881792 NC_060930.1 CM021573.2 99.48 True local misassembly 169959490 170342693 169885457 170266505 NC_060930.1 CM021573.2 99.07 True local misassembly 170343656 170594715 170267387 170517543 NC_060930.1 CM021573.2 98.52 True local misassembly 170595474 171421528 170518246 171344665 NC_060930.1 CM021573.2 99.02 True local misassembly 171421961 171444495 171345712 171368314 NC_060930.1 CM021573.2 98.74 True local misassembly 171444658 171837927 171368315 171763391 NC_060930.1 CM021573.2 96.94 True local misassembly 171838476 172123911 171764466 172045445 NC_060930.1 CM021573.2 95.3 True indel: indel (> 5bp) 172124168 172126628 172045688 172048152 NC_060930.1 CM021573.2 98.7 True CONTIG CM021573.2 172048152 misassembled 2146 2827 2131 2815 NC_060931.1 CM021574.2 97.1 True indel: indel (> 5bp) 3201 308479 3182 309281 NC_060931.1 CM021574.2 98.31 True local misassembly 308938 357293 309793 358523 NC_060931.1 CM021574.2 95.36 True local misassembly 357979 555657 359284 558435 NC_060931.1 CM021574.2 98.67 True local misassembly 555668 594440 558546 597846 NC_060931.1 CM021574.2 95.16 True local misassembly 595345 690330 598910 694493 NC_060931.1 CM021574.2 99.09 True indel: indel (> 5bp) 690633 764572 694748 769540 NC_060931.1 CM021574.2 97.96 True indel: indel (> 5bp) 764772 788183 769791 793144 NC_060931.1 CM021574.2 99.29 True indel: indel (> 5bp) 788461 1009297 793352 1014521 NC_060931.1 CM021574.2 98.75 True local misassembly 1011796 1295816 1015682 1299012 NC_060931.1 CM021574.2 97.24 True local misassembly 1304441 1706874 1306466 1700228 NC_060931.1 CM021574.2 97.62 True local misassembly 1707115 2044575 1700229 2036031 NC_060931.1 CM021574.2 98.39 True local misassembly 2044902 4507906 2036554 4502542 NC_060931.1 CM021574.2 99.2 True indel: indel (> 5bp) 4508086 4699539 4502750 4694204 NC_060931.1 CM021574.2 99.54 True relocation, inconsistency = 8504 4708044 5287379 4694205 5273529 NC_060931.1 CM021574.2 99.65 True local misassembly 5285526 5566932 5273530 5554877 NC_060931.1 CM021574.2 99.72 True indel: indel (<= 5bp) 5567027 6095840 5554971 6083978 NC_060931.1 CM021574.2 99.71 True relocation, inconsistency = -82544 6106602 6865710 6841794 6084125 NC_060931.1 CM021574.2 99.52 True relocation, inconsistency = -10761 6854950 10086405 6841795 10071118 NC_060931.1 CM021574.2 99.5 True indel: stretch of mismatches 10086435 10293344 10071148 10278125 NC_060931.1 CM021574.2 99.7 True indel: indel (> 5bp) 10293399 10579969 10278240 10564779 NC_060931.1 CM021574.2 99.79 True indel: indel (> 5bp) 10580027 14601599 10564817 14585684 NC_060931.1 CM021574.2 99.67 True local misassembly 14603044 16328705 14586706 16310731 NC_060931.1 CM021574.2 99.57 True fake: not a misassembly (possible transposable element) 40667724 40668691 16310732 16311699 NC_060943.1 CM021574.2 99.48 True fake: not a misassembly (possible transposable element) 16328456 18862554 16311700 18845564 NC_060931.1 CM021574.2 99.85 True indel: indel (> 5bp) 18862836 20412928 18845822 20395838 NC_060931.1 CM021574.2 99.73 True local misassembly 20414721 22722938 20397087 22702958 NC_060931.1 CM021574.2 99.72 True indel: indel (> 5bp) 22723032 22936953 22703045 22916879 NC_060931.1 CM021574.2 99.79 True indel: indel (<= 5bp) 22937096 23640642 22917026 23620873 NC_060931.1 CM021574.2 99.78 True indel: indel (> 5bp) 23640743 27602960 23621010 27573967 NC_060931.1 CM021574.2 99.62 True indel: indel (> 5bp) 27603064 28698193 27574035 28668685 NC_060931.1 CM021574.2 99.78 True indel: indel (> 5bp) 28698377 30122480 28668851 30092787 NC_060931.1 CM021574.2 99.77 True local misassembly 30123114 30253247 30092969 30223069 NC_060931.1 CM021574.2 99.7 True indel: indel (> 5bp) 30253640 31281921 30223448 31251696 NC_060931.1 CM021574.2 99.85 True indel: indel (> 5bp) 31282020 32559538 31251807 32525783 NC_060931.1 CM021574.2 99.52 True indel: indel (> 5bp) 32559676 38212802 32525981 38175094 NC_060931.1 CM021574.2 99.77 True indel: stretch of mismatches 38212890 38265333 38175182 38227954 NC_060931.1 CM021574.2 99.19 True indel: indel (> 5bp) 38265603 38386328 38228193 38348939 NC_060931.1 CM021574.2 99.76 True local misassembly 38384496 38385064 38349859 38350427 NC_060931.1 CM021574.2 96.66 True local misassembly 38385847 38389679 38351197 38355022 NC_060931.1 CM021574.2 99.26 True relocation, inconsistency = 16092 38405772 40997567 38355023 40946588 NC_060931.1 CM021574.2 99.74 True fake: not a misassembly (possible transposable element) 40997568 40998661 40947686 40946591 NC_060931.1 CM021574.2 99.73 True fake: not a misassembly (possible transposable element) 40998662 41526779 40947687 41475573 NC_060931.1 CM021574.2 99.81 True indel: indel (> 5bp) 41526928 44201310 41475738 44150056 NC_060931.1 CM021574.2 99.84 True indel: indel (> 5bp) 44201455 44385652 44150226 44334190 NC_060931.1 CM021574.2 99.69 True local misassembly 44385995 45071428 44334292 45019122 NC_060931.1 CM021574.2 99.64 True indel: indel (> 5bp) 45071563 48213988 45019223 48160754 NC_060931.1 CM021574.2 99.68 True indel: indel (> 5bp) 48214147 53664731 48160946 53606164 NC_060931.1 CM021574.2 99.63 True local misassembly 53664875 54557988 53606586 54499585 NC_060931.1 CM021574.2 99.78 True local misassembly 54558088 56324870 54500345 56267812 NC_060931.1 CM021574.2 99.43 True local misassembly 56324967 56365226 56267821 56308775 NC_060931.1 CM021574.2 97.68 True local misassembly 56366502 56564715 56309631 56507977 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = -36131 56528585 56984403 56507978 56963826 NC_060931.1 CM021574.2 99.63 True indel: indel (> 5bp) 56984422 57038144 56963861 57017675 NC_060931.1 CM021574.2 98.88 True relocation, inconsistency = 12623 57050768 58175050 57017676 58141729 NC_060931.1 CM021574.2 99.8 True indel: stretch of mismatches 58175296 58183123 58141975 58149801 NC_060931.1 CM021574.2 99.58 True local misassembly 58184178 58270137 58150856 58237157 NC_060931.1 CM021574.2 99.57 True local misassembly 58273817 58396796 58239984 58362891 NC_060931.1 CM021574.2 99.69 True local misassembly 58419696 58473614 58383355 58438048 NC_060931.1 CM021574.2 95.79 True local misassembly 58476132 58516920 58441626 58482424 NC_060931.1 CM021574.2 98.3 True relocation, inconsistency = 12642 58529563 58718318 58482425 58671165 NC_060931.1 CM021574.2 99.1 True local misassembly 58720205 58722233 58672631 58674634 NC_060931.1 CM021574.2 97.88 True local misassembly 58723078 58743749 58675375 58696300 NC_060931.1 CM021574.2 98.45 True local misassembly 58743333 58782468 58697146 58736181 NC_060931.1 CM021574.2 99.17 True local misassembly 58783092 58783671 58736910 58737489 NC_060931.1 CM021574.2 98.28 True relocation, inconsistency = -11205 58775941 58991146 58740964 58956016 NC_060931.1 CM021574.2 99.77 True relocation, inconsistency = -7153 58984013 58986075 58956036 58958098 NC_060931.1 CM021574.2 99.85 True indel: indel (> 5bp) 58986393 58987826 58958436 58959869 NC_060931.1 CM021574.2 99.93 True indel: indel (> 5bp) 58987837 58988359 58959870 58960392 NC_060931.1 CM021574.2 99.81 True indel: indel (> 5bp) 58988642 58989485 58960685 58961528 NC_060931.1 CM021574.2 99.88 True indel: indel (<= 5bp) 58989491 58990685 58961529 58962723 NC_060931.1 CM021574.2 99.92 True indel: stretch of mismatches 58991104 58991910 58963142 58963948 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 58992051 58992659 58964099 58964707 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 58993055 58994210 58965123 58966278 NC_060931.1 CM021574.2 99.83 True indel: indel (> 5bp) 58994451 58997641 58966534 58969724 NC_060931.1 CM021574.2 99.94 True indel: indel (<= 5bp) 58997642 58999776 58969730 58971864 NC_060931.1 CM021574.2 99.86 True indel: indel (> 5bp) 59000145 59001866 58972243 58973964 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59001877 59002546 58973965 58974634 NC_060931.1 CM021574.2 99.85 True indel: indel (<= 5bp) 59002552 59003632 58974635 58975715 NC_060931.1 CM021574.2 99.91 True indel: indel (<= 5bp) 59003638 59008206 58975716 58980284 NC_060931.1 CM021574.2 99.96 True indel: indel (<= 5bp) 59008212 59008982 58980285 58981055 NC_060931.1 CM021574.2 100.0 True indel: stretch of mismatches 59009413 59011228 58981486 58983301 NC_060931.1 CM021574.2 99.94 True indel: indel (<= 5bp) 59011661 59012254 58983739 58984332 NC_060931.1 CM021574.2 99.83 True indel: indel (<= 5bp) 59012260 59013353 58984333 58985426 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59013364 59014013 58985427 58986076 NC_060931.1 CM021574.2 100.0 True indel: stretch of mismatches 59014400 59016348 58986463 58988411 NC_060931.1 CM021574.2 99.95 True indel: indel (<= 5bp) 59016829 59017901 58988887 58989959 NC_060931.1 CM021574.2 100.0 True local misassembly 59019257 59022382 58991310 58994435 NC_060931.1 CM021574.2 99.97 True indel: indel (> 5bp) 59022534 59023836 58994572 58995874 NC_060931.1 CM021574.2 99.92 True local misassembly 59024912 59026311 58996925 58998324 NC_060931.1 CM021574.2 99.93 True indel: indel (<= 5bp) 59026317 59026960 58998325 58998968 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59026981 59029164 58998969 59001152 NC_060931.1 CM021574.2 99.95 True indel: indel (<= 5bp) 59029170 59031628 59001153 59003611 NC_060931.1 CM021574.2 99.96 True indel: indel (> 5bp) 59032080 59032628 59004073 59004621 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59032629 59033144 59004632 59005147 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59033145 59034486 59005163 59006504 NC_060931.1 CM021574.2 99.93 True indel: indel (> 5bp) 59034487 59038053 59006515 59010081 NC_060931.1 CM021574.2 99.94 True indel: stretch of mismatches 59038316 59038859 59010344 59010887 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 59038865 59041164 59010888 59013187 NC_060931.1 CM021574.2 99.91 True indel: indel (> 5bp) 59041165 59044216 59013198 59016249 NC_060931.1 CM021574.2 99.93 True indel: indel (> 5bp) 59044227 59046287 59016250 59018310 NC_060931.1 CM021574.2 99.9 True indel: indel (<= 5bp) 59046293 59047971 59018311 59019989 NC_060931.1 CM021574.2 99.94 True indel: indel (<= 5bp) 59047972 59050099 59019995 59022122 NC_060931.1 CM021574.2 100.0 True indel: stretch of mismatches 59050378 59051428 59022401 59023451 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 59051429 59052385 59023457 59024413 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 59052735 59058364 59024773 59030402 NC_060931.1 CM021574.2 99.96 True relocation, inconsistency = 15438 59073803 59097859 59030403 59054459 NC_060931.1 CM021574.2 99.98 True indel: indel (<= 5bp) 59097860 59117171 59054461 59073772 NC_060931.1 CM021574.2 99.96 True indel: indel (<= 5bp) 59117173 59124874 59073773 59081474 NC_060931.1 CM021574.2 99.97 True indel: indel (> 5bp) 59124875 59139844 59081487 59096456 NC_060931.1 CM021574.2 99.98 True indel: indel (<= 5bp) 59140107 59140645 59096723 59097261 NC_060931.1 CM021574.2 99.63 True indel: indel (<= 5bp) 59140646 59148493 59097267 59105114 NC_060931.1 CM021574.2 99.97 True inversion 59171905 59258463 59191662 59105115 NC_060931.1 CM021574.2 99.94 True relocation, inconsistency = -23411 59235053 59683858 59191663 59640478 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = 13670 59697529 59770217 59640479 59713166 NC_060931.1 CM021574.2 98.78 True local misassembly 59765606 59803291 59713167 59750513 NC_060931.1 CM021574.2 98.02 True local misassembly 59804831 60416266 59750514 60364504 NC_060931.1 CM021574.2 99.52 True local misassembly 60420589 60426384 60368143 60373938 NC_060931.1 CM021574.2 99.88 True fake: not a misassembly (possible transposable element) 60454310 60456891 60373939 60376520 NC_060931.1 CM021574.2 99.03 True fake: not a misassembly (possible transposable element) 60426258 60453777 60376536 60404731 NC_060931.1 CM021574.2 97.25 True fake: not a misassembly (possible transposable element) 60484307 60486245 60404732 60406670 NC_060931.1 CM021574.2 98.66 True fake: not a misassembly (possible transposable element) 60448905 60453798 60406671 60411564 NC_060931.1 CM021574.2 98.16 True local misassembly 60460609 60461334 60411565 60412290 NC_060931.1 CM021574.2 98.55 True relocation, inconsistency = -7152 60454183 60473433 60412291 60431881 NC_060931.1 CM021574.2 97.7 True relocation, inconsistency = 13618 60487052 60495804 60431882 60440634 NC_060931.1 CM021574.2 99.21 True fake: not a misassembly (possible transposable element) 60482181 60484327 60440971 60443117 NC_060931.1 CM021574.2 98.93 True fake: not a misassembly (possible transposable element) 60498812 60500008 60443640 60444836 NC_060931.1 CM021574.2 96.83 True local misassembly 60500009 60500920 60445517 60446428 NC_060931.1 CM021574.2 97.37 True relocation, inconsistency = -13962 60486959 60498948 60446429 60458418 NC_060931.1 CM021574.2 99.41 True local misassembly 60500993 60502694 60458419 60460120 NC_060931.1 CM021574.2 99.17 True local misassembly 60503100 60512235 60460868 60470003 NC_060931.1 CM021574.2 99.39 True local misassembly 60514280 60528125 60470004 60483849 NC_060931.1 CM021574.2 99.88 True indel: indel (<= 5bp) 60528476 60559564 60484201 60515290 NC_060931.1 CM021574.2 99.76 True indel: stretch of mismatches 60559565 60564987 60515291 60520714 NC_060931.1 CM021574.2 99.59 True local misassembly 60566010 60581977 60520715 60536682 NC_060931.1 CM021574.2 99.86 True local misassembly 60588110 60592192 60536683 60540765 NC_060931.1 CM021574.2 99.82 True relocation, inconsistency = -15330 60576964 60582579 60540867 60546482 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = -10220 60572360 60581554 60546483 60555677 NC_060931.1 CM021574.2 99.46 True relocation, inconsistency = 29298 60610853 60612134 60555678 60556959 NC_060931.1 CM021574.2 99.49 True local misassembly 60615201 60624945 60556960 60566704 NC_060931.1 CM021574.2 99.55 True local misassembly 60622902 60639413 60566705 60583213 NC_060931.1 CM021574.2 99.52 True local misassembly 60634305 60643628 60583214 60592537 NC_060931.1 CM021574.2 99.59 True local misassembly 60649761 60651617 60592538 60594394 NC_060931.1 CM021574.2 99.61 True local misassembly 60650597 60660944 60594395 60604743 NC_060931.1 CM021574.2 99.62 True local misassembly 60659923 60661487 60604744 60606308 NC_060931.1 CM021574.2 99.43 True local misassembly 60658762 60666597 60606309 60614144 NC_060931.1 CM021574.2 99.41 True local misassembly 60661488 60676149 60614145 60628806 NC_060931.1 CM021574.2 99.69 True relocation, inconsistency = -14649 60661501 60663383 60628807 60630689 NC_060931.1 CM021574.2 99.21 True relocation, inconsistency = 32021 60695405 60703047 60630690 60638333 NC_060931.1 CM021574.2 99.68 True local misassembly 60706796 60726740 60638334 60658621 NC_060931.1 CM021574.2 97.94 True relocation, inconsistency = -7833 60718908 60732777 60658622 60672491 NC_060931.1 CM021574.2 99.76 True local misassembly 60733800 60765009 60672492 60702679 NC_060931.1 CM021574.2 96.5 True local misassembly 60760240 60761017 60702680 60703457 NC_060931.1 CM021574.2 99.56 True relocation, inconsistency = -10222 60750796 60760976 60703458 60713637 NC_060931.1 CM021574.2 99.52 True local misassembly 60756207 60757572 60713638 60715003 NC_060931.1 CM021574.2 99.31 True local misassembly 60760981 60773917 60715004 60727936 NC_060931.1 CM021574.2 99.73 True local misassembly 60780046 60787120 60727937 60735011 NC_060931.1 CM021574.2 99.73 True local misassembly 60784475 60795248 60735012 60745785 NC_060931.1 CM021574.2 99.84 True relocation, inconsistency = -10218 60785031 60801908 60745786 60762663 NC_060931.1 CM021574.2 99.67 True relocation, inconsistency = -8174 60793735 60795900 60762664 60764829 NC_060931.1 CM021574.2 99.67 True relocation, inconsistency = 21462 60817363 60831943 60764830 60779410 NC_060931.1 CM021574.2 99.53 True relocation, inconsistency = -15670 60816274 60826775 60779411 60789912 NC_060931.1 CM021574.2 99.79 True local misassembly 60829842 60845939 60789913 60806009 NC_060931.1 CM021574.2 99.55 True local misassembly 60842874 60862747 60806010 60825881 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = 12259 60875007 60878862 60825882 60829737 NC_060931.1 CM021574.2 99.66 True local misassembly 60877841 60895362 60829738 60847260 NC_060931.1 CM021574.2 99.66 True relocation, inconsistency = 816136 61711499 61714583 60847261 60850345 NC_060931.1 CM021574.2 99.63 True relocation, inconsistency = -829419 60885165 60895537 60850346 60860719 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = 815114 61711278 61713564 60861346 60863632 NC_060931.1 CM021574.2 99.7 True relocation, inconsistency = 40841 61754406 61761881 60863633 60871126 NC_060931.1 CM021574.2 99.48 True relocation, inconsistency = -31625 61730257 61739434 60871127 60880322 NC_060931.1 CM021574.2 99.63 True relocation, inconsistency = 38439 61777874 61792893 60880323 60895338 NC_060931.1 CM021574.2 99.9 True relocation, inconsistency = 25550 61818444 61821696 60895339 60898591 NC_060931.1 CM021574.2 99.76 True relocation, inconsistency = -944146 60877551 60887036 60898592 60908077 NC_060931.1 CM021574.2 99.33 True relocation, inconsistency = -9196 60877841 60899525 60908078 60929764 NC_060931.1 CM021574.2 99.66 True relocation, inconsistency = 59253 60958779 60960361 60929765 60931347 NC_060931.1 CM021574.2 99.24 True relocation, inconsistency = -79685 60880677 60901569 60931348 60952241 NC_060931.1 CM021574.2 99.46 True local misassembly 60900549 60910301 60952242 60961994 NC_060931.1 CM021574.2 99.54 True relocation, inconsistency = -14299 60896003 60914846 60961995 60980843 NC_060931.1 CM021574.2 99.42 True local misassembly 60920977 60930024 60980844 60989891 NC_060931.1 CM021574.2 99.71 True local misassembly 60927981 60941821 60989892 61003732 NC_060931.1 CM021574.2 99.81 True relocation, inconsistency = 7152 60948974 60979014 61003733 61033773 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = 58565 61037580 61039223 61033774 61035417 NC_060931.1 CM021574.2 99.46 True local misassembly 61042290 61057216 61035418 61050335 NC_060931.1 CM021574.2 99.45 True relocation, inconsistency = -64709 60992508 60993619 61050336 61051447 NC_060931.1 CM021574.2 99.47 True local misassembly 60987500 61000769 61051448 61064721 NC_060931.1 CM021574.2 99.56 True local misassembly 60995664 61014758 61064722 61083817 NC_060931.1 CM021574.2 99.57 True indel: stretch of mismatches 61014759 61071519 61083818 61140577 NC_060931.1 CM021574.2 99.8 True local misassembly 61066410 61067864 61140578 61142032 NC_060931.1 CM021574.2 99.19 True relocation, inconsistency = -19413 61048452 61071519 61142033 61165099 NC_060931.1 CM021574.2 99.71 True relocation, inconsistency = 121939 61193459 61206784 61165100 61178425 NC_060931.1 CM021574.2 99.52 True relocation, inconsistency = -127387 61079398 61081651 61178426 61180678 NC_060931.1 CM021574.2 99.5 True relocation, inconsistency = -314612 60767040 60777773 61180679 61191411 NC_060931.1 CM021574.2 99.49 True relocation, inconsistency = 434846 61212620 61232211 61191412 61210323 NC_060931.1 CM021574.2 96.11 True relocation, inconsistency = -19418 61212794 61227199 61210324 61224729 NC_060931.1 CM021574.2 99.4 True relocation, inconsistency = -679774 60547426 60557117 61224730 61234766 NC_060931.1 CM021574.2 96.7 True relocation, inconsistency = 574875 61132272 61205055 61235046 61307831 NC_060931.1 CM021574.2 99.98 True indel: stretch of mismatches 61205056 61243675 61307832 61346453 NC_060931.1 CM021574.2 99.81 True fake: not a misassembly (possible transposable element) 61123788 61126329 61346454 61348995 NC_060931.1 CM021574.2 99.37 True fake: not a misassembly (possible transposable element) 61246220 61261967 61348996 61364742 NC_060931.1 CM021574.2 99.66 True relocation, inconsistency = 28612 61290580 61293761 61364743 61367924 NC_060931.1 CM021574.2 99.62 True relocation, inconsistency = -10219 61283543 61303736 61367925 61388118 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = -109679 61194058 61205140 61388119 61399203 NC_060931.1 CM021574.2 99.1 True relocation, inconsistency = 108659 61313800 61327917 61399204 61413320 NC_060931.1 CM021574.2 99.53 True local misassembly 61328626 61343129 61414029 61428532 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = -59265 61283865 61293761 61428533 61438429 NC_060931.1 CM021574.2 99.56 True relocation, inconsistency = -10219 61283543 61303736 61438430 61458623 NC_060931.1 CM021574.2 99.82 True relocation, inconsistency = -109679 61194058 61205140 61458624 61469708 NC_060931.1 CM021574.2 99.1 True relocation, inconsistency = 108659 61313800 61327917 61469709 61483825 NC_060931.1 CM021574.2 99.53 True local misassembly 61328626 61331604 61484534 61487512 NC_060931.1 CM021574.2 99.58 True local misassembly 61326495 61343129 61487513 61504145 NC_060931.1 CM021574.2 99.56 True relocation, inconsistency = 9880 61353010 61363028 61504146 61514164 NC_060931.1 CM021574.2 99.5 True local misassembly 61359963 61361430 61514165 61515632 NC_060931.1 CM021574.2 99.52 True relocation, inconsistency = -132842 61228589 61240870 61515633 61527916 NC_060931.1 CM021574.2 99.42 True relocation, inconsistency = 130456 61371327 61388716 61527917 61545306 NC_060931.1 CM021574.2 99.84 True relocation, inconsistency = 11591 61400308 61413302 61545307 61558301 NC_060931.1 CM021574.2 99.84 True relocation, inconsistency = 19419 61432748 61440088 61558328 61565668 NC_060931.1 CM021574.2 99.94 True relocation, inconsistency = -35098 61404991 61413302 61565669 61573980 NC_060931.1 CM021574.2 99.87 True relocation, inconsistency = 41230 61459859 61465086 61579307 61584536 NC_060931.1 CM021574.2 99.91 True indel: stretch of mismatches 61465087 61473255 61584537 61592705 NC_060931.1 CM021574.2 99.87 True relocation, inconsistency = 8176 61481432 61486338 61592706 61597612 NC_060931.1 CM021574.2 99.89 True relocation, inconsistency = 32704 61523615 61538964 61602185 61617534 NC_060931.1 CM021574.2 99.86 True relocation, inconsistency = -8176 61530789 61538964 61617535 61625710 NC_060931.1 CM021574.2 99.85 True local misassembly 61539895 61541736 61627663 61629504 NC_060931.1 CM021574.2 99.49 True local misassembly 61537649 61546990 61629505 61638846 NC_060931.1 CM021574.2 99.67 True local misassembly 61551079 61565668 61638847 61653436 NC_060931.1 CM021574.2 99.75 True relocation, inconsistency = 16352 61582021 61589804 61653437 61661220 NC_060931.1 CM021574.2 99.89 True local misassembly 61590827 61595865 61661221 61666259 NC_060931.1 CM021574.2 99.86 True local misassembly 61595866 61604112 61667282 61675528 NC_060931.1 CM021574.2 99.94 True local misassembly 61599003 61603377 61675529 61679903 NC_060931.1 CM021574.2 99.68 True relocation, inconsistency = 36784 61640162 61643227 61679904 61682969 NC_060931.1 CM021574.2 99.73 True local misassembly 61640162 61644917 61682970 61687725 NC_060931.1 CM021574.2 99.71 True relocation, inconsistency = -23502 61621416 61638364 61687726 61704678 NC_060931.1 CM021574.2 99.83 True relocation, inconsistency = 9198 61647563 61657746 61704679 61714866 NC_060931.1 CM021574.2 99.71 True fake: not a misassembly (possible transposable element) 61889973 61894821 61714867 61719715 NC_060931.1 CM021574.2 99.68 True fake: not a misassembly (possible transposable element) 61661574 61669085 61719716 61727227 NC_060931.1 CM021574.2 99.91 True relocation, inconsistency = 7154 61676240 61688296 61727228 61739284 NC_060931.1 CM021574.2 99.92 True relocation, inconsistency = -26572 61661725 61665008 61739285 61742568 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = 12264 61677273 61685047 61742569 61750343 NC_060931.1 CM021574.2 99.78 True local misassembly 61687092 61695538 61750344 61758790 NC_060931.1 CM021574.2 99.91 True relocation, inconsistency = -80726 61614813 61616856 61758791 61760834 NC_060931.1 CM021574.2 99.73 True relocation, inconsistency = 89924 61711278 61714559 61765332 61768613 NC_060931.1 CM021574.2 99.69 True relocation, inconsistency = 27216 61741776 61754405 61768614 61781244 NC_060931.1 CM021574.2 99.81 True local misassembly 61755410 61773886 61781245 61799703 NC_060931.1 CM021574.2 99.76 True relocation, inconsistency = 8176 61782063 61792390 61799704 61810031 NC_060931.1 CM021574.2 99.85 True local misassembly 61791354 61795952 61810032 61814943 NC_060931.1 CM021574.2 95.62 True relocation, inconsistency = 29638 61825591 61840132 61814944 61829485 NC_060931.1 CM021574.2 99.92 True local misassembly 61844217 61849505 61829486 61834774 NC_060931.1 CM021574.2 99.75 True local misassembly 61850528 61863464 61834775 61847710 NC_060931.1 CM021574.2 99.9 True local misassembly 61860402 61863554 61847711 61850863 NC_060931.1 CM021574.2 99.91 True relocation, inconsistency = 54152 61919895 61923003 61853052 61856159 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = -130779 61792225 61798027 61856160 61861962 NC_060931.1 CM021574.2 99.67 True relocation, inconsistency = 26572 61824600 61840132 61861963 61877495 NC_060931.1 CM021574.2 99.97 True local misassembly 61843195 61847299 61877496 61881600 NC_060931.1 CM021574.2 99.78 True local misassembly 61842194 61849505 61881601 61888912 NC_060931.1 CM021574.2 99.76 True local misassembly 61850528 61863554 61888913 61901938 NC_060931.1 CM021574.2 99.92 True local misassembly 61868495 61879262 61906874 61917642 NC_060931.1 CM021574.2 99.86 True local misassembly 61881034 61891134 61919419 61929526 NC_060931.1 CM021574.2 99.79 True local misassembly 61885005 61888658 61929527 61933180 NC_060931.1 CM021574.2 99.54 True relocation, inconsistency = 17370 61906029 61912594 61933181 61939746 NC_060931.1 CM021574.2 99.74 True indel: stretch of mismatches 61912595 61915679 61939747 61942831 NC_060931.1 CM021574.2 99.94 True relocation, inconsistency = -48025 61884473 61889238 61959650 61964417 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = 7152 61896391 61903776 61964418 61971803 NC_060931.1 CM021574.2 99.95 True local misassembly 61899689 61902484 61971804 61974599 NC_060931.1 CM021574.2 99.86 True indel: stretch of mismatches 61902485 61912594 61974600 61984709 NC_060931.1 CM021574.2 99.95 True local misassembly 61915808 61925259 61987923 61997375 NC_060931.1 CM021574.2 99.97 True relocation, inconsistency = -152241 61774808 61780172 61999165 62004529 NC_060931.1 CM021574.2 99.76 True relocation, inconsistency = 140999 61923522 61944304 62006880 62027663 NC_060931.1 CM021574.2 99.93 True relocation, inconsistency = -19412 61933227 61940168 62035998 62042939 NC_060931.1 CM021574.2 99.77 True relocation, inconsistency = 64710 62009140 62031682 62047201 62069743 NC_060931.1 CM021574.2 99.94 True relocation, inconsistency = 59605 62091288 62095600 62069744 62074056 NC_060931.1 CM021574.2 99.87 True relocation, inconsistency = -26570 62069031 62079532 62074057 62084554 NC_060931.1 CM021574.2 99.45 True relocation, inconsistency = 22822 62102355 62103090 62084555 62085290 NC_060931.1 CM021574.2 99.82 True local misassembly 62105135 62110283 62085291 62090439 NC_060931.1 CM021574.2 99.78 True indel: stretch of mismatches 62110284 62121755 62090440 62101911 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = 8518 62132770 62139471 62104408 62111109 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = -29640 62110284 62117131 62111562 62118407 NC_060931.1 CM021574.2 99.86 True local misassembly 62123606 62144990 62118408 62139792 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = 21117 62166108 62174896 62139793 62148578 NC_060931.1 CM021574.2 99.78 True local misassembly 62178982 62179901 62148579 62149498 NC_060931.1 CM021574.2 99.77 True relocation, inconsistency = -21796 62159716 62161327 62151109 62152720 NC_060931.1 CM021574.2 99.6 True local misassembly 62159284 62167510 62152721 62160950 NC_060931.1 CM021574.2 99.62 True relocation, inconsistency = -9535 62157976 62168424 62160951 62171399 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = -9535 62158890 62166497 62171400 62179007 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = -11579 62154919 62167299 62179008 62191385 NC_060931.1 CM021574.2 99.77 True local misassembly 62162556 62167206 62191752 62196402 NC_060931.1 CM021574.2 99.69 True local misassembly 62171295 62184142 62196403 62209247 NC_060931.1 CM021574.2 99.84 True local misassembly 62185165 62198844 62209248 62222927 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = 25548 62224393 62239612 62222928 62238147 NC_060931.1 CM021574.2 99.83 True fake: not a misassembly (possible transposable element) 61579585 61582314 62238148 62240877 NC_060931.1 CM021574.2 99.65 True fake: not a misassembly (possible transposable element) 62237233 62244064 62240878 62247709 NC_060931.1 CM021574.2 99.97 True local misassembly 62253324 62262104 62251859 62260639 NC_060931.1 CM021574.2 99.9 True relocation, inconsistency = 275604 62537709 62543608 62260640 62266539 NC_060931.1 CM021574.2 99.85 True local misassembly 62541565 62549286 62266540 62274261 NC_060931.1 CM021574.2 99.81 True relocation, inconsistency = 20782 62570551 62579642 62274744 62283835 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = -315464 62266394 62277838 62286051 62297495 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = 1372515 63650354 63653565 62297496 62300708 NC_060931.1 CM021574.2 98.85 True relocation, inconsistency = -1269966 62386313 62389529 62303422 62306638 NC_060931.1 CM021574.2 99.59 True local misassembly 62396002 62400472 62306639 62311109 NC_060931.1 CM021574.2 99.75 True relocation, inconsistency = -87893 62312580 62319286 62311110 62317816 NC_060931.1 CM021574.2 99.94 True fake: not a misassembly (possible transposable element) 62575859 62581314 62324335 62329790 NC_060931.1 CM021574.2 99.85 True fake: not a misassembly (possible transposable element) 62332619 62351250 62331149 62349780 NC_060931.1 CM021574.2 99.95 True indel: stretch of mismatches 62351251 62359357 62349781 62357887 NC_060931.1 CM021574.2 99.95 True indel: stretch of mismatches 62359358 62377239 62357888 62375769 NC_060931.1 CM021574.2 99.81 True fake: not a misassembly (possible transposable element) 62479101 62484948 62375770 62381619 NC_060931.1 CM021574.2 99.69 True fake: not a misassembly (possible transposable element) 62383090 62411077 62381620 62409607 NC_060931.1 CM021574.2 99.93 True relocation, inconsistency = -84145 62342574 62350517 62425249 62433192 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = -203709 62147667 62155720 62434051 62442104 NC_060931.1 CM021574.2 99.86 True relocation, inconsistency = 289898 62445619 62447973 62442105 62444459 NC_060931.1 CM021574.2 99.92 True indel: stretch of mismatches 62447974 62460265 62444460 62456751 NC_060931.1 CM021574.2 99.98 True local misassembly 62463305 62466659 62458769 62462123 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = -94707 62371953 62385040 62462124 62475211 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = 105947 62490988 62501254 62475212 62485478 NC_060931.1 CM021574.2 99.88 True local misassembly 62531915 62541932 62518181 62528202 NC_060931.1 CM021574.2 99.89 True local misassembly 62571545 62588318 62557815 62574590 NC_060931.1 CM021574.2 99.95 True indel: stretch of mismatches 62588319 62592549 62574591 62578821 NC_060931.1 CM021574.2 99.95 True relocation, inconsistency = -267420 62328769 62337585 62582461 62591277 NC_060931.1 CM021574.2 99.83 True relocation, inconsistency = 264358 62602645 62607123 62591979 62596458 NC_060931.1 CM021574.2 99.85 True local misassembly 62606104 62616387 62596459 62606744 NC_060931.1 CM021574.2 99.86 True relocation, inconsistency = -85153 62531915 62539307 62607425 62614819 NC_060931.1 CM021574.2 99.75 True relocation, inconsistency = 100477 62639785 62662897 62614820 62637930 NC_060931.1 CM021574.2 99.88 True relocation, inconsistency = 7154 62670052 62683323 62637931 62651202 NC_060931.1 CM021574.2 99.83 True local misassembly 62680258 62682398 62651203 62653343 NC_060931.1 CM021574.2 99.86 True indel: stretch of mismatches 62682399 62697446 62653344 62668391 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = 322106 63019553 63028013 62668392 62676852 NC_060931.1 CM021574.2 99.54 True relocation, inconsistency = 303177 63332619 63340866 62678281 62686530 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = -306507 63034360 63044566 62686531 62696738 NC_060931.1 CM021574.2 99.5 True relocation, inconsistency = -319521 62725046 62737618 62696739 62709311 NC_060931.1 CM021574.2 99.85 True fake: not a misassembly (possible transposable element) 62753971 62758789 62709312 62714130 NC_060931.1 CM021574.2 99.75 True fake: not a misassembly (possible transposable element) 62754680 62759847 62722285 62727452 NC_060931.1 CM021574.2 99.92 True relocation, inconsistency = 12264 62772112 62789996 62727453 62745337 NC_060931.1 CM021574.2 99.92 True local misassembly 62791019 62798172 62745338 62752491 NC_060931.1 CM021574.2 99.91 True local misassembly 62800217 62803825 62752492 62756100 NC_060931.1 CM021574.2 99.72 True local misassembly 62809958 62826437 62756101 62772574 NC_060931.1 CM021574.2 99.78 True relocation, inconsistency = -10560 62815878 62848437 62772575 62805134 NC_060931.1 CM021574.2 99.87 True local misassembly 62847416 62863209 62805135 62820929 NC_060931.1 CM021574.2 99.77 True local misassembly 62865254 62866532 62820930 62822208 NC_060931.1 CM021574.2 99.88 True relocation, inconsistency = 207107 63073640 63084403 62822209 62832972 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = -10220 63074184 63081244 62832973 62840033 NC_060931.1 CM021574.2 99.85 True relocation, inconsistency = -199953 62881292 62897027 62840034 62855769 NC_060931.1 CM021574.2 99.9 True fake: not a misassembly (possible transposable element) 63128663 63133871 62855770 62860978 NC_060931.1 CM021574.2 99.89 True fake: not a misassembly (possible transposable element) 62905084 62908984 62863826 62867726 NC_060931.1 CM021574.2 99.87 True indel: stretch of mismatches 62908985 62919907 62867727 62878649 NC_060931.1 CM021574.2 99.81 True relocation, inconsistency = 252075 63172147 63180030 62878814 62886697 NC_060931.1 CM021574.2 99.68 True local misassembly 63177987 63180030 62886698 62888741 NC_060931.1 CM021574.2 99.63 True relocation, inconsistency = -224485 62957219 62958970 62890415 62892168 NC_060931.1 CM021574.2 99.62 True relocation, inconsistency = 240835 63199806 63208813 62892169 62901170 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = -246971 62961843 62962652 62901171 62901982 NC_060931.1 CM021574.2 99.78 True local misassembly 62963675 62974806 62901983 62913114 NC_060931.1 CM021574.2 99.82 True relocation, inconsistency = -304732 62670075 62676928 62913115 62919968 NC_060931.1 CM021574.2 99.95 True relocation, inconsistency = 300644 62977573 62982682 62919969 62925078 NC_060931.1 CM021574.2 99.83 True local misassembly 62984727 62995968 62925079 62936320 NC_060931.1 CM021574.2 99.8 True relocation, inconsistency = -8176 62987793 63001341 62936321 62949869 NC_060931.1 CM021574.2 99.78 True relocation, inconsistency = 8176 63009518 63010973 62949870 62951325 NC_060931.1 CM021574.2 99.93 True indel: stretch of mismatches 63010974 63035855 62951326 62976207 NC_060931.1 CM021574.2 99.9 True relocation, inconsistency = 354540 63390396 63399084 62976208 62984893 NC_060931.1 CM021574.2 99.58 True relocation, inconsistency = -354539 63044769 63054090 62985117 62994438 NC_060931.1 CM021574.2 99.93 True indel: stretch of mismatches 63054091 63057156 62994439 62997504 NC_060931.1 CM021574.2 99.91 True relocation, inconsistency = -196887 62860270 62872960 62997505 63010195 NC_060931.1 CM021574.2 99.83 True relocation, inconsistency = 217327 63090288 63093617 63010196 63013525 NC_060931.1 CM021574.2 99.81 True relocation, inconsistency = -44968 63048650 63054221 63013526 63019097 NC_060931.1 CM021574.2 99.69 True relocation, inconsistency = 19418 63073640 63084403 63019098 63029861 NC_060931.1 CM021574.2 99.82 True relocation, inconsistency = -209151 62875253 62878686 63029862 63033295 NC_060931.1 CM021574.2 99.73 True local misassembly 62881401 62881906 63033966 63034471 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = 201997 63083904 63096667 63034472 63047235 NC_060931.1 CM021574.2 99.9 True local misassembly 63098712 63100771 63047236 63049295 NC_060931.1 CM021574.2 99.89 True relocation, inconsistency = -219371 62881401 62892865 63049296 63060760 NC_060931.1 CM021574.2 99.84 True relocation, inconsistency = 231635 63124501 63126108 63060761 63062368 NC_060931.1 CM021574.2 99.96 True local misassembly 63122021 63126827 63062369 63067175 NC_060931.1 CM021574.2 99.98 True fake: not a misassembly (possible transposable element) 62884973 62888524 63067176 63070727 NC_060931.1 CM021574.2 99.67 True fake: not a misassembly (possible transposable element) 63126292 63139268 63070728 63083704 NC_060931.1 CM021574.2 99.93 True relocation, inconsistency = 13286 63152555 63158794 63083705 63089944 NC_060931.1 CM021574.2 99.83 True local misassembly 63154707 63161997 63089945 63097235 NC_060931.1 CM021574.2 99.79 True fake: not a misassembly (possible transposable element) 62915033 62917501 63097236 63099704 NC_060931.1 CM021574.2 99.67 True fake: not a misassembly (possible transposable element) 63169577 63177327 63099705 63107455 NC_060931.1 CM021574.2 99.85 True local misassembly 63178350 63180030 63107456 63109136 NC_060931.1 CM021574.2 99.64 True fake: not a misassembly (possible transposable element) 62936073 62941182 63113166 63118275 NC_060931.1 CM021574.2 99.87 True fake: not a misassembly (possible transposable element) 63188148 63195479 63118276 63125605 NC_060931.1 CM021574.2 99.85 True local misassembly 63194458 63197763 63125606 63128911 NC_060931.1 CM021574.2 99.67 True local misassembly 63199806 63217292 63128912 63146398 NC_060931.1 CM021574.2 99.89 True relocation, inconsistency = -530241 62687052 62695711 63146399 63155058 NC_060931.1 CM021574.2 99.73 True relocation, inconsistency = 521043 63216755 63237205 63155059 63175509 NC_060931.1 CM021574.2 99.89 True local misassembly 63238228 63248049 63175510 63185331 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = -268433 62979617 62987894 63185332 63193609 NC_060931.1 CM021574.2 99.68 True relocation, inconsistency = 287849 63275744 63302670 63193610 63220536 NC_060931.1 CM021574.2 99.87 True relocation, inconsistency = 9198 63311869 63313082 63220537 63221750 NC_060931.1 CM021574.2 99.64 True local misassembly 63316149 63346594 63221751 63252198 NC_060931.1 CM021574.2 99.83 True local misassembly 63342507 63343779 63252199 63253471 NC_060931.1 CM021574.2 99.73 True local misassembly 63339692 63360613 63253472 63274390 NC_060931.1 CM021574.2 99.85 True local misassembly 63358476 63370470 63275318 63287313 NC_060931.1 CM021574.2 99.81 True local misassembly 63366383 63370130 63287314 63291061 NC_060931.1 CM021574.2 99.81 True local misassembly 63369109 63382945 63291062 63304898 NC_060931.1 CM021574.2 99.83 True local misassembly 63382050 63393001 63305025 63315975 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = 11240 63404242 63419901 63315976 63331635 NC_060931.1 CM021574.2 99.86 True local misassembly 63418880 63419592 63331636 63332348 NC_060931.1 CM021574.2 99.73 True local misassembly 63422659 63435754 63332349 63345444 NC_060931.1 CM021574.2 99.55 True local misassembly 63434733 63445886 63345445 63356598 NC_060931.1 CM021574.2 99.74 True relocation, inconsistency = -21462 63424425 63427807 63356599 63359981 NC_060931.1 CM021574.2 99.39 True local misassembly 63430874 63442801 63359982 63371909 NC_060931.1 CM021574.2 99.61 True relocation, inconsistency = 31682 63474659 63485751 63372085 63383177 NC_060931.1 CM021574.2 99.9 True relocation, inconsistency = 30316 63529917 63530654 63397027 63397764 NC_060931.1 CM021574.2 99.18 True relocation, inconsistency = 12264 63542919 63565767 63397765 63420616 NC_060931.1 CM021574.2 99.3 True indel: stretch of mismatches 63566035 63597034 63420884 63451883 NC_060931.1 CM021574.2 99.78 True indel: indel (<= 5bp) 63597344 63626750 63452195 63481601 NC_060931.1 CM021574.2 99.72 True indel: stretch of mismatches 63626751 63629302 63481602 63484155 NC_060931.1 CM021574.2 99.3 True indel: stretch of mismatches 63629303 63687559 63484156 63542414 NC_060931.1 CM021574.2 99.76 True local misassembly 63691303 63700826 63542415 63551938 NC_060931.1 CM021574.2 99.81 True local misassembly 63697080 64228543 63551939 64083025 NC_060931.1 CM021574.2 99.89 True local misassembly 64231493 64955186 64083026 64806545 NC_060931.1 CM021574.2 99.44 True local misassembly 64949762 66159401 64806546 66016288 NC_060931.1 CM021574.2 99.54 True local misassembly 66160060 66790846 66016296 66646817 NC_060931.1 CM021574.2 99.56 True relocation, inconsistency = 11819 66811404 66852085 66687492 66646818 NC_060931.1 CM021574.2 99.47 True relocation, inconsistency = 386043 66312739 66329558 66687493 66704281 NC_060931.1 CM021574.2 97.77 True relocation, inconsistency = 522509 66852068 69615688 66704282 69467881 NC_060931.1 CM021574.2 99.82 True indel: indel (> 5bp) 69615990 70182700 69468139 70034804 NC_060931.1 CM021574.2 99.62 True indel: indel (> 5bp) 70182898 70681948 70034952 70533703 NC_060931.1 CM021574.2 99.75 True local misassembly 70682232 72069243 70534085 71920230 NC_060931.1 CM021574.2 99.81 True indel: indel (<= 5bp) 72069362 74068404 71920347 73922568 NC_060931.1 CM021574.2 99.51 True local misassembly 74072596 74235511 73922593 74085414 NC_060931.1 CM021574.2 99.79 True relocation, inconsistency = 27947 74263459 74789928 74085415 74611218 NC_060931.1 CM021574.2 99.71 True indel: indel (> 5bp) 74789881 75616433 74611219 75436842 NC_060931.1 CM021574.2 99.67 True local misassembly 75619252 76030224 75436843 75847725 NC_060931.1 CM021574.2 99.75 True relocation, inconsistency = 247915 76308964 76321965 75860738 75847726 NC_060931.1 CM021574.2 99.36 True relocation, inconsistency = -336136 76041428 76510877 75860739 76328976 NC_060931.1 CM021574.2 99.6 True relocation, inconsistency = -28029 76482849 78118786 76328977 77964506 NC_060931.1 CM021574.2 99.85 True indel: indel (> 5bp) 78118809 78293788 77964542 78140339 NC_060931.1 CM021574.2 98.98 True relocation, inconsistency = 1562723 76528148 76555961 78168250 78140464 NC_060931.1 CM021574.2 99.14 True relocation, inconsistency = 1737842 78293941 85349101 78168388 85224897 NC_060931.1 CM021574.2 99.78 True local misassembly 85349422 85906832 85225062 85782463 NC_060931.1 CM021574.2 99.72 True local misassembly 85906910 86710168 85782635 86585965 NC_060931.1 CM021574.2 99.85 True local misassembly 86710444 88056882 86586407 87932870 NC_060931.1 CM021574.2 99.83 True indel: indel (<= 5bp) 88057238 90470588 87933227 90346548 NC_060931.1 CM021574.2 99.84 True local misassembly 90470699 92833669 90346549 92709382 NC_060931.1 CM021574.2 99.78 True local misassembly 92832495 95030327 92714716 94914154 NC_060931.1 CM021574.2 99.75 True relocation, inconsistency = -445773 94585041 94589572 94919184 94914641 NC_060931.1 CM021574.2 96.9 True translocation 36122912 36123931 94919185 94920204 NC_060926.1 CM021574.2 99.16 True translocation 95030314 99631180 94920205 99513936 NC_060931.1 CM021574.2 99.62 True indel: indel (> 5bp) 99631280 101553888 99514068 101436384 NC_060931.1 CM021574.2 99.69 True local misassembly 101555280 102298407 101436385 102180743 NC_060931.1 CM021574.2 99.55 True local misassembly 102306981 102690030 102185951 102571473 NC_060931.1 CM021574.2 98.98 True indel: indel (<= 5bp) 102690073 103401494 102571513 103283664 NC_060931.1 CM021574.2 99.58 True local misassembly 103401658 106138566 103287157 106024087 NC_060931.1 CM021574.2 99.72 True local misassembly 106139354 107047932 106024932 106934496 NC_060931.1 CM021574.2 99.7 True indel: indel (> 5bp) 107048064 107223469 106934700 107109949 NC_060931.1 CM021574.2 99.79 True local misassembly 107223690 112025602 107110432 111902096 NC_060931.1 CM021574.2 99.33 True indel: stretch of mismatches 112025603 122758767 111902097 122631814 NC_060931.1 CM021574.2 99.82 True local misassembly 122759289 123554580 122632352 123426652 NC_060931.1 CM021574.2 99.69 True indel: indel (<= 5bp) 123554822 124359818 123426895 124230946 NC_060931.1 CM021574.2 99.73 True local misassembly 124360037 125822921 124231075 125693965 NC_060931.1 CM021574.2 99.85 True indel: indel (<= 5bp) 125822987 132080693 125694034 131956596 NC_060931.1 CM021574.2 99.71 True local misassembly 132083918 132528244 131956597 132400974 NC_060931.1 CM021574.2 99.82 True indel: indel (> 5bp) 132528393 133341460 132401101 133214426 NC_060931.1 CM021574.2 99.81 True local misassembly 133342412 135218084 133215431 135090869 NC_060931.1 CM021574.2 99.75 True local misassembly 135218335 138177191 135090943 138063113 NC_060931.1 CM021574.2 99.23 True indel: indel (> 5bp) 138177212 139282229 138063157 139167597 NC_060931.1 CM021574.2 99.71 True indel: indel (> 5bp) 139282299 142651049 139167654 142534130 NC_060931.1 CM021574.2 99.75 True local misassembly 142652554 143357643 142535533 143239955 NC_060931.1 CM021574.2 99.75 True local misassembly 143358746 143359461 143241509 143242224 NC_060931.1 CM021574.2 97.77 True local misassembly 143360237 144123961 143243179 144006673 NC_060931.1 CM021574.2 99.87 True relocation, inconsistency = -20380 144123014 144483166 144026106 144386218 NC_060931.1 CM021574.2 99.92 True relocation, inconsistency = 69075 144552242 145961173 144386219 145796296 NC_060931.1 CM021574.2 99.69 True local misassembly 145961661 149132195 145796589 148967861 NC_060931.1 CM021574.2 99.74 True indel: stretch of mismatches 149132332 149545617 148967998 149382691 NC_060931.1 CM021574.2 99.38 True local misassembly 149546179 149549113 149382922 149385856 NC_060931.1 CM021574.2 99.8 True indel: indel (<= 5bp) 149549573 149550568 149386317 149387312 NC_060931.1 CM021574.2 99.8 True indel: indel (<= 5bp) 149550570 149551876 149387313 149388619 NC_060931.1 CM021574.2 99.46 True indel: indel (<= 5bp) 149551878 149553230 149388620 149389972 NC_060931.1 CM021574.2 99.63 True indel: indel (<= 5bp) 149553231 149555186 149389974 149391929 NC_060931.1 CM021574.2 99.54 True indel: indel (<= 5bp) 149555191 149555699 149391930 149392438 NC_060931.1 CM021574.2 100.0 True local misassembly 149559159 149560102 149392439 149393382 NC_060931.1 CM021574.2 99.26 True indel: indel (<= 5bp) 149560561 149561796 149393843 149395078 NC_060931.1 CM021574.2 99.35 True indel: indel (<= 5bp) 149561798 149562418 149395079 149395699 NC_060931.1 CM021574.2 99.52 True indel: indel (<= 5bp) 149562421 149563113 149395700 149396392 NC_060931.1 CM021574.2 99.57 True indel: indel (<= 5bp) 149563114 149565660 149396396 149398942 NC_060931.1 CM021574.2 99.65 True indel: indel (> 5bp) 149565689 149571336 149398963 149404610 NC_060931.1 CM021574.2 99.81 True indel: indel (> 5bp) 149571376 149575107 149404611 149408342 NC_060931.1 CM021574.2 99.84 True indel: indel (<= 5bp) 149575108 149576187 149408345 149409424 NC_060931.1 CM021574.2 99.91 True indel: indel (<= 5bp) 149576188 149579298 149409427 149412537 NC_060931.1 CM021574.2 99.81 True indel: indel (<= 5bp) 149579300 149580934 149412538 149414172 NC_060931.1 CM021574.2 99.82 True indel: indel (<= 5bp) 149580936 149583030 149414173 149416267 NC_060931.1 CM021574.2 99.9 True local misassembly 149585191 149586612 149416273 149417694 NC_060931.1 CM021574.2 99.79 True indel: indel (<= 5bp) 149586614 149587532 149417695 149418613 NC_060931.1 CM021574.2 98.91 True indel: indel (<= 5bp) 149587717 149589102 149418801 149420186 NC_060931.1 CM021574.2 99.57 True local misassembly 149589809 149591469 149420915 149422575 NC_060931.1 CM021574.2 99.58 True local misassembly 149592032 151199267 149423268 151031439 NC_060931.1 CM021574.2 99.68 True relocation, inconsistency = 4039022 155252480 155254714 151033646 151031440 NC_060931.1 CM021574.2 97.18 True relocation, inconsistency = 3923682 151199354 151328797 151033647 151164476 NC_060931.1 CM021574.2 97.64 True local misassembly 151330284 154502541 151164477 154334384 NC_060931.1 CM021574.2 99.68 True local misassembly 154502755 156506568 154334504 156328128 NC_060931.1 CM021574.2 99.19 True local misassembly 156507458 156527589 156328582 156347889 NC_060931.1 CM021574.2 95.2 True local misassembly 156528875 156530342 156350482 156351949 NC_060931.1 CM021574.2 99.18 True local misassembly 156530756 156534515 156352147 156355906 NC_060931.1 CM021574.2 99.57 True local misassembly 156535100 156536139 156356495 156357534 NC_060931.1 CM021574.2 99.9 True indel: indel (> 5bp) 156536517 156540784 156357905 156362172 NC_060931.1 CM021574.2 99.27 True indel: indel (<= 5bp) 156540785 156546295 156362174 156367684 NC_060931.1 CM021574.2 99.84 True indel: indel (<= 5bp) 156546403 156547040 156367793 156368430 NC_060931.1 CM021574.2 99.37 True local misassembly 156547671 156587580 156368771 156408604 NC_060931.1 CM021574.2 98.84 True local misassembly 156589225 158919619 156410663 158741238 NC_060931.1 CM021574.2 99.47 True indel: stretch of mismatches 158919827 158938192 158741446 158760037 NC_060931.1 CM021574.2 97.84 True indel: indel (<= 5bp) 158938346 159262494 158760192 159085216 NC_060931.1 CM021574.2 98.99 True local misassembly 159263777 159279369 159086145 159101737 NC_060931.1 CM021574.2 99.96 True local misassembly 159281293 159290350 159102282 159111339 NC_060931.1 CM021574.2 99.98 True local misassembly 159293166 159298573 159113059 159118466 NC_060931.1 CM021574.2 99.93 True indel: indel (> 5bp) 159298628 159303380 159118467 159123219 NC_060931.1 CM021574.2 99.92 True indel: indel (> 5bp) 159303415 159307160 159123220 159126965 NC_060931.1 CM021574.2 99.92 True indel: indel (<= 5bp) 159307162 159320034 159126966 159139838 NC_060931.1 CM021574.2 99.85 True local misassembly 159320035 159322877 159139926 159142768 NC_060931.1 CM021574.2 99.82 True indel: indel (> 5bp) 159322878 159324086 159142776 159143984 NC_060931.1 CM021574.2 99.92 True indel: indel (> 5bp) 159324549 159325529 159144433 159145413 NC_060931.1 CM021574.2 99.9 True indel: indel (> 5bp) 159325997 159340646 159145888 159160537 NC_060931.1 CM021574.2 99.76 True local misassembly 159340744 159341324 159160748 159161328 NC_060931.1 CM021574.2 96.73 True local misassembly 159342041 159342607 159162205 159162771 NC_060931.1 CM021574.2 95.59 True local misassembly 159342893 159343610 159163705 159164422 NC_060931.1 CM021574.2 96.8 True local misassembly 159343748 159344294 159164787 159165333 NC_060931.1 CM021574.2 95.43 True local misassembly 159344861 159345401 159166512 159167052 NC_060931.1 CM021574.2 96.67 True local misassembly 159345532 159346074 159167643 159168185 NC_060931.1 CM021574.2 95.21 True indel: indel (<= 5bp) 159346075 159346914 159168187 159169026 NC_060931.1 CM021574.2 97.02 True local misassembly 159347774 159348294 159172209 159172729 NC_060931.1 CM021574.2 98.27 True local misassembly 159348643 159349168 159174331 159174856 NC_060931.1 CM021574.2 97.53 True local misassembly 159349799 159350330 159177348 159177879 NC_060931.1 CM021574.2 96.8 True local misassembly 159351513 159352510 159181722 159182719 NC_060931.1 CM021574.2 97.8 True local misassembly 159352511 159353198 159183138 159183825 NC_060931.1 CM021574.2 95.49 True local misassembly 159353641 159354545 159184416 159185320 NC_060931.1 CM021574.2 98.9 True indel: indel (<= 5bp) 159354546 159355824 159185322 159186600 NC_060931.1 CM021574.2 99.53 True local misassembly 159357827 159358572 159194594 159195339 NC_060931.1 CM021574.2 98.93 True indel: indel (<= 5bp) 159358575 159360297 159195340 159197062 NC_060931.1 CM021574.2 99.42 True indel: indel (<= 5bp) 159360302 159361161 159197063 159197922 NC_060931.1 CM021574.2 99.65 True indel: indel (> 5bp) 159361168 159362207 159197923 159198962 NC_060931.1 CM021574.2 99.42 True local misassembly 159362421 159365119 159199271 159201969 NC_060931.1 CM021574.2 99.44 True indel: indel (<= 5bp) 159365125 159365768 159201970 159202613 NC_060931.1 CM021574.2 97.67 True indel: indel (> 5bp) 159366066 159366701 159202975 159203610 NC_060931.1 CM021574.2 98.11 True indel: indel (<= 5bp) 159366980 159368849 159203893 159205762 NC_060931.1 CM021574.2 99.3 True indel: indel (> 5bp) 159368872 159369686 159205793 159206607 NC_060931.1 CM021574.2 99.51 True indel: indel (> 5bp) 159369687 159370723 159206627 159207663 NC_060931.1 CM021574.2 99.04 True local misassembly 159370724 159371397 159207857 159208530 NC_060931.1 CM021574.2 99.55 True indel: indel (> 5bp) 159371460 159372091 159208531 159209162 NC_060931.1 CM021574.2 98.89 True local misassembly 159372122 159373183 159209369 159210430 NC_060931.1 CM021574.2 98.87 True local misassembly 159373481 159376440 159211303 159214262 NC_060931.1 CM021574.2 99.53 True indel: indel (<= 5bp) 159376445 159378106 159214263 159215924 NC_060931.1 CM021574.2 99.82 True indel: indel (> 5bp) 159378296 159379695 159216120 159217519 NC_060931.1 CM021574.2 99.57 True indel: indel (<= 5bp) 159379696 159385611 159217523 159223438 NC_060931.1 CM021574.2 99.86 True indel: indel (<= 5bp) 159385617 159388961 159223439 159226783 NC_060931.1 CM021574.2 99.76 True indel: indel (<= 5bp) 159388962 159391095 159226788 159228921 NC_060931.1 CM021574.2 99.81 True indel: indel (> 5bp) 159391105 159393039 159228922 159230856 NC_060931.1 CM021574.2 99.84 True indel: indel (<= 5bp) 159393041 159395213 159230857 159233029 NC_060931.1 CM021574.2 99.72 True local misassembly 159395446 159410096 159233796 159248446 NC_060931.1 CM021574.2 99.85 True indel: indel (<= 5bp) 159410136 159420077 159248483 159258424 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159420080 159442825 159258425 159281170 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159442826 159466024 159281172 159304370 NC_060931.1 CM021574.2 99.94 True indel: indel (<= 5bp) 159466025 159467315 159304373 159305663 NC_060931.1 CM021574.2 99.77 True indel: indel (<= 5bp) 159467319 159468343 159305664 159306688 NC_060931.1 CM021574.2 99.41 True local misassembly 159469391 159473281 159307747 159311637 NC_060931.1 CM021574.2 99.36 True indel: indel (<= 5bp) 159473282 159474745 159311639 159313102 NC_060931.1 CM021574.2 99.52 True indel: indel (<= 5bp) 159474752 159476735 159313108 159315091 NC_060931.1 CM021574.2 99.8 True local misassembly 159477264 159603112 159315145 159441837 NC_060931.1 CM021574.2 97.59 True local misassembly 159603590 159615387 159442539 159454782 NC_060931.1 CM021574.2 95.71 True indel: indel (> 5bp) 159615804 159617292 159455248 159456736 NC_060931.1 CM021574.2 99.6 True indel: indel (<= 5bp) 159617293 159622456 159456738 159461901 NC_060931.1 CM021574.2 99.88 True indel: indel (<= 5bp) 159622864 159625405 159462310 159464851 NC_060931.1 CM021574.2 99.92 True indel: indel (<= 5bp) 159625408 159625998 159464852 159465442 NC_060931.1 CM021574.2 98.98 True indel: indel (> 5bp) 159626052 159626875 159465443 159466266 NC_060931.1 CM021574.2 99.76 True indel: indel (> 5bp) 159626929 159627775 159466267 159467113 NC_060931.1 CM021574.2 99.88 True indel: indel (> 5bp) 159627793 159632145 159467114 159471466 NC_060931.1 CM021574.2 99.93 True indel: indel (<= 5bp) 159632146 159635068 159471468 159474390 NC_060931.1 CM021574.2 99.69 True indel: indel (> 5bp) 159635119 159643625 159474391 159482897 NC_060931.1 CM021574.2 99.84 True indel: indel (> 5bp) 159643626 159647934 159482946 159487254 NC_060931.1 CM021574.2 99.91 True local misassembly 159648189 159649203 159487787 159488801 NC_060931.1 CM021574.2 99.8 True local misassembly 159649204 159650167 159489384 159490347 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159650168 159662291 159490351 159502474 NC_060931.1 CM021574.2 99.95 True indel: indel (> 5bp) 159662343 159666464 159502475 159506596 NC_060931.1 CM021574.2 99.88 True indel: indel (<= 5bp) 159666468 159668632 159506597 159508761 NC_060931.1 CM021574.2 99.82 True indel: indel (<= 5bp) 159668634 159704274 159508762 159544402 NC_060931.1 CM021574.2 99.94 True indel: indel (> 5bp) 159704275 159707688 159544421 159547834 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159707690 159716299 159547835 159556444 NC_060931.1 CM021574.2 99.99 True indel: indel (> 5bp) 159716357 159718155 159556445 159558243 NC_060931.1 CM021574.2 99.89 True indel: indel (<= 5bp) 159718156 159729460 159558248 159569552 NC_060931.1 CM021574.2 99.94 True local misassembly 159731582 159733082 159570540 159572040 NC_060931.1 CM021574.2 99.6 True indel: indel (> 5bp) 159733083 159733721 159572081 159572719 NC_060931.1 CM021574.2 99.69 True indel: indel (<= 5bp) 159733725 159750770 159572720 159589765 NC_060931.1 CM021574.2 99.97 True indel: indel (<= 5bp) 159750771 159765913 159589768 159604910 NC_060931.1 CM021574.2 99.99 True indel: indel (<= 5bp) 159765915 159779029 159604911 159618025 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 159779030 159787898 159618054 159626922 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159787899 159804728 159626924 159643753 NC_060931.1 CM021574.2 99.99 True local misassembly 159804834 159805500 159643754 159644420 NC_060931.1 CM021574.2 100.0 True indel: stretch of mismatches 159805935 159806437 159644855 159645357 NC_060931.1 CM021574.2 100.0 True relocation, inconsistency = 9354 159820959 159895026 159650525 159724400 NC_060931.1 CM021574.2 98.52 True local misassembly 159895656 159897150 159724918 159726412 NC_060931.1 CM021574.2 99.87 True indel: indel (> 5bp) 159897151 159899665 159726422 159728936 NC_060931.1 CM021574.2 99.76 True indel: indel (> 5bp) 159899719 159901675 159728959 159730915 NC_060931.1 CM021574.2 99.9 True indel: indel (<= 5bp) 159901679 159903926 159730916 159733163 NC_060931.1 CM021574.2 99.82 True indel: indel (<= 5bp) 159903929 159904913 159733164 159734148 NC_060931.1 CM021574.2 99.9 True indel: indel (> 5bp) 159904921 159905497 159734149 159734725 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159905499 159906120 159734726 159735347 NC_060931.1 CM021574.2 100.0 True indel: indel (<= 5bp) 159906123 159915574 159735348 159744799 NC_060931.1 CM021574.2 99.79 True indel: indel (<= 5bp) 159915575 159919695 159744802 159748922 NC_060931.1 CM021574.2 99.85 True indel: indel (<= 5bp) 159919723 159926175 159748954 159755406 NC_060931.1 CM021574.2 99.81 True indel: indel (<= 5bp) 159926176 159928146 159755408 159757378 NC_060931.1 CM021574.2 99.9 True indel: indel (<= 5bp) 159928147 159932745 159757382 159761980 NC_060931.1 CM021574.2 99.85 True indel: indel (<= 5bp) 159932746 159935132 159761982 159764368 NC_060931.1 CM021574.2 99.25 True local misassembly 159935443 159935972 159768695 159769224 NC_060931.1 CM021574.2 100.0 True indel: indel (> 5bp) 159936362 159937008 159769601 159770247 NC_060931.1 CM021574.2 99.07 True indel: stretch of mismatches 159937166 159937957 159770405 159771196 NC_060931.1 CM021574.2 99.49 True indel: indel (<= 5bp) 159937958 159939179 159771198 159772419 NC_060931.1 CM021574.2 99.26 True indel: indel (<= 5bp) 159939393 159940501 159772630 159773738 NC_060931.1 CM021574.2 99.28 True indel: indel (> 5bp) 159940531 159952690 159773817 159785929 NC_060931.1 CM021574.2 97.65 True local misassembly 159953371 160327002 159786157 160160713 NC_060931.1 CM021574.2 98.95 True indel: indel (> 5bp) 160327243 160565235 160160896 160400489 NC_060931.1 CM021574.2 96.82 True CONTIG CM021574.2 160402684 misassembled 1 62942 1 62906 NC_060932.1 CM021575.2 99.71 True local misassembly 63076 131129 62907 130573 NC_060932.1 CM021575.2 98.81 True indel: indel (> 5bp) 131174 491840 130642 496730 NC_060932.1 CM021575.2 97.56 True indel: indel (> 5bp) 491961 953638 496769 962123 NC_060932.1 CM021575.2 97.58 True local misassembly 955205 1139508 962527 1148670 NC_060932.1 CM021575.2 98.67 True local misassembly 1141546 1654691 1150291 1663884 NC_060932.1 CM021575.2 98.64 True indel: indel (> 5bp) 1654829 1667642 1664081 1676926 NC_060932.1 CM021575.2 99.54 True local misassembly 1668013 1864003 1678962 1875163 NC_060932.1 CM021575.2 99.13 True local misassembly 1864265 2027782 1875666 2038556 NC_060932.1 CM021575.2 99.47 True relocation, inconsistency = 197501 2225405 2228657 2041930 2038678 NC_060932.1 CM021575.2 99.02 True local misassembly 2222170 2225404 2047254 2044020 NC_060932.1 CM021575.2 99.13 True indel: indel (> 5bp) 2215722 2222161 2053694 2047255 NC_060932.1 CM021575.2 99.46 True indel: indel (<= 5bp) 2209480 2215267 2059939 2054152 NC_060932.1 CM021575.2 99.67 True indel: indel (> 5bp) 2206338 2209479 2063087 2059946 NC_060932.1 CM021575.2 99.68 True indel: indel (<= 5bp) 2205350 2206336 2064074 2063088 NC_060932.1 CM021575.2 99.29 True indel: indel (> 5bp) 2168246 2205093 2101096 2064252 NC_060932.1 CM021575.2 98.4 True translocation 56750694 56751254 2101658 2101097 NC_060934.1 CM021575.2 95.75 True translocation 2086296 2108559 2112291 2134390 NC_060932.1 CM021575.2 96.55 True indel: indel (> 5bp) 2108712 2172657 2134532 2198302 NC_060932.1 CM021575.2 98.54 True translocation 56750694 56751254 2208935 2209496 NC_060934.1 CM021575.2 95.75 True translocation 2030111 2090707 2270768 2209497 NC_060932.1 CM021575.2 97.56 True relocation, inconsistency = 135154 2228811 3893234 2273718 3937164 NC_060932.1 CM021575.2 99.56 True indel: stretch of mismatches 3893259 4875375 3937189 4918863 NC_060932.1 CM021575.2 99.52 True local misassembly 4876942 5137866 4919141 5179745 NC_060932.1 CM021575.2 99.46 True local misassembly 5137820 6259722 5179810 6291378 NC_060932.1 CM021575.2 98.5 True indel: indel (> 5bp) 6259940 6433430 6291642 6465009 NC_060932.1 CM021575.2 99.66 True local misassembly 6434354 6745509 6466441 6777363 NC_060932.1 CM021575.2 99.63 True relocation, inconsistency = -19161 6726349 7305596 6777364 7352600 NC_060932.1 CM021575.2 98.91 True relocation, inconsistency = 4222843 11528440 11705063 7529246 7352601 NC_060932.1 CM021575.2 99.53 True relocation, inconsistency = -1201632 12644190 12730071 7614977 7529247 NC_060932.1 CM021575.2 99.26 True relocation, inconsistency = 4124047 7616081 8520142 7614978 8520182 NC_060932.1 CM021575.2 99.41 True indel: indel (> 5bp) 8520205 9970583 8520302 9969771 NC_060932.1 CM021575.2 99.69 True local misassembly 9970656 10456699 9970435 10456849 NC_060932.1 CM021575.2 99.58 True indel: indel (> 5bp) 10456846 11515002 10457069 11515919 NC_060932.1 CM021575.2 99.54 True local misassembly 11515681 11516850 11516558 11517727 NC_060932.1 CM021575.2 96.5 True local misassembly 11517489 11518940 11518364 11519815 NC_060932.1 CM021575.2 96.21 True indel: indel (> 5bp) 11519116 11519867 11519973 11520724 NC_060932.1 CM021575.2 96.14 True local misassembly 11521283 11522031 11522161 11522909 NC_060932.1 CM021575.2 95.73 True indel: indel (> 5bp) 11522032 11522617 11522916 11523501 NC_060932.1 CM021575.2 96.25 True local misassembly 11523435 11524030 11524381 11524976 NC_060932.1 CM021575.2 95.47 True local misassembly 11524721 11526049 11525642 11526970 NC_060932.1 CM021575.2 95.56 True local misassembly 11528440 11880822 11529828 11881928 NC_060932.1 CM021575.2 99.61 True relocation, inconsistency = -15303 11865953 12192149 11882362 12208584 NC_060932.1 CM021575.2 99.63 True indel: indel (> 5bp) 12192279 12874063 12208743 12890424 NC_060932.1 CM021575.2 99.8 True indel: indel (<= 5bp) 12874301 13845874 12890661 13861634 NC_060932.1 CM021575.2 99.72 True local misassembly 13845915 14219605 13861804 14235356 NC_060932.1 CM021575.2 99.59 True indel: indel (> 5bp) 14219768 18286335 14235469 18301386 NC_060932.1 CM021575.2 99.63 True indel: indel (> 5bp) 18286402 23821386 18301444 23837631 NC_060932.1 CM021575.2 99.69 True indel: indel (<= 5bp) 23821480 24021294 23837726 24037389 NC_060932.1 CM021575.2 99.61 True indel: indel (> 5bp) 24021518 26280190 24037639 26274956 NC_060932.1 CM021575.2 98.9 True local misassembly 26280294 27277341 26275243 27272310 NC_060932.1 CM021575.2 99.71 True local misassembly 27275713 37781580 27272311 37772824 NC_060932.1 CM021575.2 99.78 True local misassembly 37781758 41699067 37774468 41692144 NC_060932.1 CM021575.2 99.77 True indel: indel (<= 5bp) 41699125 41831924 41692200 41825007 NC_060932.1 CM021575.2 99.61 True indel: indel (> 5bp) 41832312 43519552 41825347 43507276 NC_060932.1 CM021575.2 99.52 True indel: indel (> 5bp) 43519577 43933387 43507371 43921595 NC_060932.1 CM021575.2 99.75 True local misassembly 43937347 44228553 43921596 44212753 NC_060932.1 CM021575.2 99.83 True relocation, inconsistency = 2107386 46335940 46336948 44212754 44213761 NC_060932.1 CM021575.2 98.06 True relocation, inconsistency = -2108408 44228541 44336657 44213762 44320343 NC_060932.1 CM021575.2 96.83 True relocation, inconsistency = -37761 44298897 44334655 44320344 44355720 NC_060932.1 CM021575.2 97.21 True relocation, inconsistency = -28538 44306118 44329051 44355721 44378662 NC_060932.1 CM021575.2 99.05 True relocation, inconsistency = -22934 44306118 44309035 44378663 44381582 NC_060932.1 CM021575.2 98.77 True relocation, inconsistency = -25649 44283405 44320043 44381601 44418123 NC_060932.1 CM021575.2 96.29 True relocation, inconsistency = 1861729 46181773 46184134 44418124 44420484 NC_060932.1 CM021575.2 98.32 True relocation, inconsistency = -1844915 44339721 44342237 44420986 44423502 NC_060932.1 CM021575.2 99.8 True indel: indel (<= 5bp) 44342414 44363580 44423683 44444854 NC_060932.1 CM021575.2 99.53 True indel: stretch of mismatches 44363581 44372552 44444855 44453824 NC_060932.1 CM021575.2 99.62 True relocation, inconsistency = 1836238 46208791 46209435 44453825 44454473 NC_060932.1 CM021575.2 97.66 True relocation, inconsistency = -1958040 44251396 44264815 44454474 44467889 NC_060932.1 CM021575.2 98.17 True relocation, inconsistency = 121799 44386615 44393628 44467890 44474902 NC_060932.1 CM021575.2 99.34 True relocation, inconsistency = 1724586 46118215 46122392 44474903 44479299 NC_060932.1 CM021575.2 95.35 True relocation, inconsistency = -1521135 44601258 44602437 44479300 44480478 NC_060932.1 CM021575.2 99.2 True relocation, inconsistency = -333364 44270305 44271618 44481710 44483023 NC_060932.1 CM021575.2 98.13 True relocation, inconsistency = 130129 44401748 44405115 44483024 44486391 NC_060932.1 CM021575.2 99.58 True relocation, inconsistency = -18356 44387235 44398024 44486867 44497657 NC_060932.1 CM021575.2 99.31 True relocation, inconsistency = -92750 44306654 44312143 44499037 44504523 NC_060932.1 CM021575.2 98.51 True relocation, inconsistency = 1890434 46208270 46214020 44510216 44515963 NC_060932.1 CM021575.2 98.35 True local misassembly 46221328 46228967 44516479 44524116 NC_060932.1 CM021575.2 98.5 True relocation, inconsistency = -1786122 44445573 44477069 44526844 44558342 NC_060932.1 CM021575.2 99.92 True local misassembly 44489898 44493503 44571049 44574654 NC_060932.1 CM021575.2 99.64 True relocation, inconsistency = 1737796 46231307 46232705 44574662 44576061 NC_060932.1 CM021575.2 98.07 True relocation, inconsistency = -1885321 44386579 44392381 44615256 44621057 NC_060932.1 CM021575.2 99.52 True relocation, inconsistency = -12220 44382893 44386133 44623789 44627028 NC_060932.1 CM021575.2 99.41 True relocation, inconsistency = -28546 44389830 44398024 44659271 44667467 NC_060932.1 CM021575.2 99.6 True relocation, inconsistency = -7645 44390380 44396809 44667468 44673899 NC_060932.1 CM021575.2 99.6 True relocation, inconsistency = -10866 44389830 44398024 44677786 44685982 NC_060932.1 CM021575.2 99.46 True local misassembly 44392929 44397992 44685983 44691048 NC_060932.1 CM021575.2 99.49 True relocation, inconsistency = -9001 44388992 44395515 44691049 44697571 NC_060932.1 CM021575.2 99.46 True relocation, inconsistency = 287114 44682630 44693816 44697572 44708759 NC_060932.1 CM021575.2 99.61 True relocation, inconsistency = -9004 44684813 44690431 44708760 44714378 NC_060932.1 CM021575.2 99.69 True relocation, inconsistency = 1420491 46115184 46115819 44718640 44719275 NC_060932.1 CM021575.2 96.87 True relocation, inconsistency = -1477526 44638294 44647830 44719276 44728810 NC_060932.1 CM021575.2 99.55 True indel: stretch of mismatches 44647973 44649760 44728953 44730740 NC_060932.1 CM021575.2 99.95 True indel: stretch of mismatches 44649761 44664687 44730741 44745666 NC_060932.1 CM021575.2 99.91 True relocation, inconsistency = -323814 44342414 44349807 44747207 44754603 NC_060932.1 CM021575.2 99.43 True relocation, inconsistency = 1320151 45669959 45670773 44754604 44755417 NC_060932.1 CM021575.2 99.4 True relocation, inconsistency = -996343 44675337 44682559 44756324 44763545 NC_060932.1 CM021575.2 99.68 True relocation, inconsistency = -293568 44388992 44398024 44763546 44772581 NC_060932.1 CM021575.2 99.49 True relocation, inconsistency = 218530 44616555 44618775 44772582 44774802 NC_060932.1 CM021575.2 99.59 True relocation, inconsistency = 75040 44700331 44775336 44781318 44856322 NC_060932.1 CM021575.2 99.94 True relocation, inconsistency = 7484 44783464 44786471 44856966 44859973 NC_060932.1 CM021575.2 99.63 True relocation, inconsistency = 1300311 46116089 46120031 44889280 44893222 NC_060932.1 CM021575.2 99.62 True relocation, inconsistency = -1731040 44388992 44398024 44893223 44902257 NC_060932.1 CM021575.2 99.56 True relocation, inconsistency = -7645 44390380 44392378 44902258 44904257 NC_060932.1 CM021575.2 99.52 True local misassembly 44389830 44398024 44904258 44912454 NC_060932.1 CM021575.2 99.55 True local misassembly 44392929 44398024 44912455 44917552 NC_060932.1 CM021575.2 99.55 True relocation, inconsistency = -10194 44389830 44397475 44919552 44927198 NC_060932.1 CM021575.2 99.45 True relocation, inconsistency = -7646 44389830 44399217 44927199 44936588 NC_060932.1 CM021575.2 99.44 True relocation, inconsistency = 581391 44980609 44989155 44936589 44945132 NC_060932.1 CM021575.2 99.42 True relocation, inconsistency = 1225468 46214624 46217110 44945133 44947615 NC_060932.1 CM021575.2 98.13 True relocation, inconsistency = -1837602 44385442 44393665 44953549 44961772 NC_060932.1 CM021575.2 99.21 True relocation, inconsistency = 189487 44592504 44596840 44971124 44975461 NC_060932.1 CM021575.2 99.29 True relocation, inconsistency = -282735 44314211 44315704 44975567 44977060 NC_060932.1 CM021575.2 98.26 True indel: indel (<= 5bp) 44316145 44317573 44977499 44978927 NC_060932.1 CM021575.2 98.25 True indel: indel (<= 5bp) 44317575 44318635 44978928 44979988 NC_060932.1 CM021575.2 98.05 True relocation, inconsistency = 566468 44885104 44889022 44979989 44983907 NC_060932.1 CM021575.2 99.4 True relocation, inconsistency = -499193 44389830 44394755 44983908 44988831 NC_060932.1 CM021575.2 99.44 True relocation, inconsistency = 1718132 46112888 46121418 44988832 44997363 NC_060932.1 CM021575.2 99.54 True relocation, inconsistency = -1778441 44342978 44348074 44997364 45002461 NC_060932.1 CM021575.2 99.62 True relocation, inconsistency = 39756 44389830 44398024 45004461 45012657 NC_060932.1 CM021575.2 99.6 True local misassembly 44395478 44396809 45012658 45013990 NC_060932.1 CM021575.2 99.61 True relocation, inconsistency = -8660 44389830 44397653 45015671 45023496 NC_060932.1 CM021575.2 99.49 True relocation, inconsistency = 545380 44943034 44968713 45023497 45049176 NC_060932.1 CM021575.2 99.88 True fake: not a misassembly (possible transposable element) 44355378 44358104 45049177 45051905 NC_060932.1 CM021575.2 99.46 True fake: not a misassembly (possible transposable element) 44973634 44983529 45054097 45063992 NC_060932.1 CM021575.2 99.59 True indel: stretch of mismatches 44983530 44994416 45063993 45074878 NC_060932.1 CM021575.2 99.68 True relocation, inconsistency = -600751 44393666 44397992 45074879 45079207 NC_060932.1 CM021575.2 99.48 True relocation, inconsistency = -9001 44388992 44398024 45079208 45088242 NC_060932.1 CM021575.2 99.51 True local misassembly 44395478 44398024 45088243 45090791 NC_060932.1 CM021575.2 99.52 True relocation, inconsistency = 612304 45010388 45020986 45090851 45101449 NC_060932.1 CM021575.2 99.75 True relocation, inconsistency = -629276 44391711 44392378 45101450 45102117 NC_060932.1 CM021575.2 99.54 True local misassembly 44389830 44397992 45102118 45110282 NC_060932.1 CM021575.2 99.51 True relocation, inconsistency = -9001 44388992 44398024 45110283 45119317 NC_060932.1 CM021575.2 99.54 True local misassembly 44392929 44396809 45119318 45123199 NC_060932.1 CM021575.2 99.66 True relocation, inconsistency = 1781384 46179540 46180153 45124546 45125159 NC_060932.1 CM021575.2 96.91 True indel: indel (<= 5bp) 46180154 46184260 45125161 45129267 NC_060932.1 CM021575.2 98.81 True local misassembly 46184261 46185069 45129604 45130412 NC_060932.1 CM021575.2 98.64 True relocation, inconsistency = -1844060 44341751 44347110 45131154 45136514 NC_060932.1 CM021575.2 99.33 True relocation, inconsistency = 708945 45056056 45065322 45136515 45145777 NC_060932.1 CM021575.2 99.72 True indel: stretch of mismatches 45065323 45081021 45145778 45161395 NC_060932.1 CM021575.2 99.41 True indel: stretch of mismatches 45081022 45083282 45161396 45163656 NC_060932.1 CM021575.2 97.09 True indel: indel (<= 5bp) 45083463 45088382 45163833 45168751 NC_060932.1 CM021575.2 99.76 True relocation, inconsistency = -698742 44389830 44392378 45168941 45171489 NC_060932.1 CM021575.2 99.52 True local misassembly 44389830 44398762 45171490 45180423 NC_060932.1 CM021575.2 99.56 True relocation, inconsistency = -8839 44389924 44397763 45180424 45188264 NC_060932.1 CM021575.2 99.57 True relocation, inconsistency = 710120 45107884 45125456 45188265 45205835 NC_060932.1 CM021575.2 99.82 True relocation, inconsistency = -805297 44342748 44343812 45228424 45229488 NC_060932.1 CM021575.2 99.49 True relocation, inconsistency = 283938 44627751 44634726 45229489 45236463 NC_060932.1 CM021575.2 99.63 True relocation, inconsistency = -299398 44341045 44348074 45242180 45249210 NC_060932.1 CM021575.2 99.6 True relocation, inconsistency = 820876 45178344 45184048 45258604 45264309 NC_060932.1 CM021575.2 99.47 True indel: indel (<= 5bp) 45184207 45192383 45264469 45272645 NC_060932.1 CM021575.2 99.94 True indel: stretch of mismatches 45192384 45211625 45272646 45291887 NC_060932.1 CM021575.2 99.95 True indel: stretch of mismatches 45211626 45227520 45291888 45307782 NC_060932.1 CM021575.2 99.93 True indel: stretch of mismatches 45227521 45234246 45307783 45314508 NC_060932.1 CM021575.2 99.85 True indel: indel (<= 5bp) 45234630 45238325 45314893 45318588 NC_060932.1 CM021575.2 100.0 True relocation, inconsistency = 22452 45270077 45275098 45327888 45332908 NC_060932.1 CM021575.2 99.76 True relocation, inconsistency = -696153 44617903 44621239 45371866 45375201 NC_060932.1 CM021575.2 99.56 True relocation, inconsistency = 673560 45294800 45301130 45375202 45381533 NC_060932.1 CM021575.2 99.92 True indel: stretch of mismatches 45301131 45311287 45381534 45391690 NC_060932.1 CM021575.2 99.83 True indel: stretch of mismatches 45311288 45319891 45391691 45400293 NC_060932.1 CM021575.2 99.74 True indel: stretch of mismatches 45319892 45324130 45400294 45404532 NC_060932.1 CM021575.2 99.96 True indel: stretch of mismatches 45324131 45331566 45404533 45411968 NC_060932.1 CM021575.2 100.0 True fake: not a misassembly (possible transposable element) 46186823 46191594 45411969 45416740 NC_060932.1 CM021575.2 98.41 True fake: not a misassembly (possible transposable element) 45340977 45372641 45421380 45453044 NC_060932.1 CM021575.2 99.99 True indel: stretch of mismatches 45372642 45457563 45453045 45537967 NC_060932.1 CM021575.2 99.98 True indel: stretch of mismatches 45457937 45462205 45538341 45542608 NC_060932.1 CM021575.2 99.88 True fake: not a misassembly (possible transposable element) 44887739 44893331 45542708 45548298 NC_060932.1 CM021575.2 99.51 True fake: not a misassembly (possible transposable element) 45467900 45479331 45548299 45559731 NC_060932.1 CM021575.2 99.94 True indel: stretch of mismatches 45479332 45495323 45559732 45575722 NC_060932.1 CM021575.2 99.99 True indel: stretch of mismatches 45495324 45534458 45575723 45614856 NC_060932.1 CM021575.2 99.94 True indel: stretch of mismatches 45534459 45549104 45614857 45629501 NC_060932.1 CM021575.2 99.98 True indel: stretch of mismatches 45549105 45628106 45629502 45708502 NC_060932.1 CM021575.2 99.96 True fake: not a misassembly (possible transposable element) 44346865 44348728 45708503 45710366 NC_060932.1 CM021575.2 99.49 True fake: not a misassembly (possible transposable element) 45629971 45661033 45710367 45741427 NC_060932.1 CM021575.2 99.8 True fake: not a misassembly (possible transposable element) 44675564 44678847 45741428 45744711 NC_060932.1 CM021575.2 99.38 True fake: not a misassembly (possible transposable element) 45668376 45687081 45748713 45767417 NC_060932.1 CM021575.2 99.88 True local misassembly 45688116 45795932 45768452 45876266 NC_060932.1 CM021575.2 99.92 True relocation, inconsistency = -132520 45663742 45665218 45876596 45878068 NC_060932.1 CM021575.2 97.44 True relocation, inconsistency = 119263 45784910 45793819 45878497 45887403 NC_060932.1 CM021575.2 99.29 True relocation, inconsistency = 460019 46253839 46254809 45887404 45888375 NC_060932.1 CM021575.2 98.17 True relocation, inconsistency = -446767 45808043 45868095 45888376 45948428 NC_060932.1 CM021575.2 99.88 True fake: not a misassembly (possible transposable element) 45745675 45748901 45949863 45953088 NC_060932.1 CM021575.2 99.23 True fake: not a misassembly (possible transposable element) 45874455 45950893 45954782 46031219 NC_060932.1 CM021575.2 99.94 True fake: not a misassembly (possible transposable element) 44297572 44300262 46031298 46033987 NC_060932.1 CM021575.2 97.99 True fake: not a misassembly (possible transposable element) 45957531 46045349 46037862 46125680 NC_060932.1 CM021575.2 99.95 True indel: stretch of mismatches 46045350 46069660 46125681 46149991 NC_060932.1 CM021575.2 99.81 True indel: stretch of mismatches 46069661 46083082 46149992 46163413 NC_060932.1 CM021575.2 99.82 True indel: stretch of mismatches 46083083 46091462 46163414 46171791 NC_060932.1 CM021575.2 99.66 True indel: stretch of mismatches 46091463 46121999 46171792 46202325 NC_060932.1 CM021575.2 99.91 True local misassembly 46124004 46163200 46204333 46243529 NC_060932.1 CM021575.2 99.92 True relocation, inconsistency = 16981 46181543 46190925 46244891 46254272 NC_060932.1 CM021575.2 98.48 True relocation, inconsistency = -25808 46165118 46173091 46254273 46262248 NC_060932.1 CM021575.2 99.04 True relocation, inconsistency = 69805 46243193 46323712 46262545 46343732 NC_060932.1 CM021575.2 97.4 True relocation, inconsistency = -71012 46252786 46254239 46343818 46345271 NC_060932.1 CM021575.2 96.97 True indel: indel (<= 5bp) 46254240 46256093 46345274 46347127 NC_060932.1 CM021575.2 97.79 True indel: indel (<= 5bp) 46256095 46259869 46347128 46350902 NC_060932.1 CM021575.2 97.77 True indel: indel (<= 5bp) 46259870 46263169 46350904 46354203 NC_060932.1 CM021575.2 98.15 True indel: indel (<= 5bp) 46263170 46265669 46354205 46356704 NC_060932.1 CM021575.2 96.8 True local misassembly 46266008 46267464 46356705 46358161 NC_060932.1 CM021575.2 97.6 True local misassembly 46267465 46269528 46358500 46360563 NC_060932.1 CM021575.2 97.63 True local misassembly 46269529 46278159 46360901 46369531 NC_060932.1 CM021575.2 98.33 True indel: indel (<= 5bp) 46278161 46280815 46369532 46372186 NC_060932.1 CM021575.2 97.82 True indel: indel (<= 5bp) 46280816 46295566 46372188 46386938 NC_060932.1 CM021575.2 97.43 True local misassembly 46295905 46297367 46386939 46388401 NC_060932.1 CM021575.2 98.09 True local misassembly 46297368 46299431 46388739 46390802 NC_060932.1 CM021575.2 97.0 True local misassembly 46299432 46301706 46391140 46393414 NC_060932.1 CM021575.2 98.55 True indel: indel (<= 5bp) 46301708 46303169 46393415 46394876 NC_060932.1 CM021575.2 98.63 True indel: indel (<= 5bp) 46303578 46305820 46395283 46397525 NC_060932.1 CM021575.2 97.86 True indel: indel (<= 5bp) 46305822 46306908 46397526 46398612 NC_060932.1 CM021575.2 98.53 True indel: indel (<= 5bp) 46306910 46309183 46398613 46400886 NC_060932.1 CM021575.2 98.02 True indel: indel (<= 5bp) 46309185 46310660 46400887 46402362 NC_060932.1 CM021575.2 98.04 True local misassembly 46311078 46312170 46403119 46404211 NC_060932.1 CM021575.2 98.54 True indel: indel (<= 5bp) 46312171 46314787 46404214 46406830 NC_060932.1 CM021575.2 98.01 True indel: indel (<= 5bp) 46314789 46316681 46406831 46408723 NC_060932.1 CM021575.2 97.68 True indel: indel (<= 5bp) 46316682 46317774 46408725 46409817 NC_060932.1 CM021575.2 98.26 True indel: indel (<= 5bp) 46317775 46318522 46409820 46410567 NC_060932.1 CM021575.2 97.59 True indel: indel (<= 5bp) 46318524 46319792 46410568 46411836 NC_060932.1 CM021575.2 98.42 True local misassembly 46319793 46323706 46412175 46416088 NC_060932.1 CM021575.2 98.47 True local misassembly 46324334 46458985 46416716 46551410 NC_060932.1 CM021575.2 99.78 True local misassembly 46458944 46872039 46552221 46965338 NC_060932.1 CM021575.2 99.86 True local misassembly 46884779 49568608 46980144 49663909 NC_060932.1 CM021575.2 99.92 True indel: indel (> 5bp) 49568633 56288106 49663966 56393338 NC_060932.1 CM021575.2 99.66 True indel: indel (> 5bp) 56288414 57587404 56393562 57692115 NC_060932.1 CM021575.2 99.86 True relocation, inconsistency = 10762 57598167 59645556 57692116 59740372 NC_060932.1 CM021575.2 99.8 True local misassembly 59648104 60972069 59740373 61064145 NC_060932.1 CM021575.2 99.75 True local misassembly 60972279 64658074 61064255 64749745 NC_060932.1 CM021575.2 99.85 True local misassembly 64658298 69030223 64750489 69123193 NC_060932.1 CM021575.2 99.8 True indel: indel (> 5bp) 69030273 69881655 69123219 69974431 NC_060932.1 CM021575.2 99.78 True local misassembly 69881963 72546408 69974489 72635804 NC_060932.1 CM021575.2 99.74 True local misassembly 72546651 76287975 72637946 76379800 NC_060932.1 CM021575.2 99.49 True local misassembly 76288221 77772973 76379917 77865766 NC_060932.1 CM021575.2 99.69 True local misassembly 77773780 77790186 77866197 77882160 NC_060932.1 CM021575.2 96.77 True indel: indel (> 5bp) 77790284 86251119 77882202 86337127 NC_060932.1 CM021575.2 99.76 True relocation, inconsistency = 233597 86484717 86524455 86337128 86376863 NC_060932.1 CM021575.2 99.52 True relocation, inconsistency = -425483 86098973 86103408 86376864 86381299 NC_060932.1 CM021575.2 99.43 True relocation, inconsistency = 45685 86149094 86362783 86381300 86594848 NC_060932.1 CM021575.2 99.54 True relocation, inconsistency = 246524 86609314 86688297 86594855 86673838 NC_060932.1 CM021575.2 99.82 True relocation, inconsistency = -203581 86484717 86524472 86673839 86713590 NC_060932.1 CM021575.2 99.55 True relocation, inconsistency = -425483 86098990 86103408 86713591 86718009 NC_060932.1 CM021575.2 99.41 True relocation, inconsistency = 605094 86708503 87279112 86718010 87288367 NC_060932.1 CM021575.2 99.73 True local misassembly 87282440 87296129 87290178 87303718 NC_060932.1 CM021575.2 97.34 True local misassembly 87301625 87426935 87303719 87429012 NC_060932.1 CM021575.2 99.76 True indel: indel (> 5bp) 87427090 87939338 87429139 87941402 NC_060932.1 CM021575.2 99.79 True local misassembly 87939789 91117460 87942037 91119742 NC_060932.1 CM021575.2 99.86 True indel: indel (> 5bp) 91117482 91808147 91119843 91810507 NC_060932.1 CM021575.2 99.62 True local misassembly 91808995 95732066 91810508 95733886 NC_060932.1 CM021575.2 99.82 True indel: indel (> 5bp) 95732136 98712677 95733892 98713682 NC_060932.1 CM021575.2 99.73 True indel: indel (> 5bp) 98712993 101551247 98714014 101552134 NC_060932.1 CM021575.2 99.87 True local misassembly 101551599 102778243 101553643 102779967 NC_060932.1 CM021575.2 99.75 True indel: indel (<= 5bp) 102778303 102810660 102780022 102812369 NC_060932.1 CM021575.2 99.36 True local misassembly 102809180 103549185 102812370 103552239 NC_060932.1 CM021575.2 99.89 True fake: not a misassembly (possible transposable element) 103549168 103549677 103552749 103552240 NC_060932.1 CM021575.2 99.62 True fake: not a misassembly (possible transposable element) 103549702 109038613 103553456 109038979 NC_060932.1 CM021575.2 99.76 True indel: stretch of mismatches 109038643 112191464 109039009 112191651 NC_060932.1 CM021575.2 99.87 True fake: not a misassembly (possible transposable element) 112191491 112192351 112192517 112191657 NC_060932.1 CM021575.2 99.88 True fake: not a misassembly (possible transposable element) 112192352 113288738 112192518 113291886 NC_060932.1 CM021575.2 99.52 True indel: indel (> 5bp) 113288819 115405471 113292033 115408814 NC_060932.1 CM021575.2 99.75 True local misassembly 115405942 119597675 115408980 119604757 NC_060932.1 CM021575.2 99.72 True indel: indel (> 5bp) 119598023 120626180 119605134 120633725 NC_060932.1 CM021575.2 99.65 True local misassembly 120627861 122048072 120636661 122057137 NC_060932.1 CM021575.2 99.81 True local misassembly 122050521 122074010 122057537 122080538 NC_060932.1 CM021575.2 97.74 True local misassembly 122074137 125434461 122081067 125439513 NC_060932.1 CM021575.2 99.75 True local misassembly 125435194 129950728 125440318 129951233 NC_060932.1 CM021575.2 99.57 True local misassembly 129951548 131651706 129951625 131651983 NC_060932.1 CM021575.2 99.65 True indel: indel (> 5bp) 131651741 132118739 131652007 132120946 NC_060932.1 CM021575.2 99.37 True indel: indel (<= 5bp) 132118779 132342074 132120988 132344625 NC_060932.1 CM021575.2 99.7 True local misassembly 132342342 132356344 132345069 132359119 NC_060932.1 CM021575.2 99.39 True local misassembly 132356878 132392005 132359667 132394788 NC_060932.1 CM021575.2 99.53 True fake: not a misassembly (possible transposable element) 41587264 41588505 132395665 132396905 NC_060929.1 CM021575.2 96.52 True fake: not a misassembly (possible transposable element) 132391235 135361166 132396906 135369220 NC_060932.1 CM021575.2 99.69 True local misassembly 135361421 135582640 135369368 135590610 NC_060932.1 CM021575.2 99.69 True local misassembly 135583866 139322511 135590779 139332846 NC_060932.1 CM021575.2 99.62 True indel: indel (> 5bp) 139322749 140639017 139333028 140648888 NC_060932.1 CM021575.2 99.82 True indel: indel (<= 5bp) 140639050 142323295 140648918 142333273 NC_060932.1 CM021575.2 99.68 True local misassembly 142324552 143357614 142333469 143369350 NC_060932.1 CM021575.2 99.18 True local misassembly 143358064 143361771 143369653 143373336 NC_060932.1 CM021575.2 98.43 True indel: indel (> 5bp) 143361724 144129019 143373337 144140194 NC_060932.1 CM021575.2 99.24 True indel: indel (<= 5bp) 144129061 144312112 144140237 144323309 NC_060932.1 CM021575.2 99.54 True local misassembly 144313019 144363288 144324014 144374831 NC_060932.1 CM021575.2 97.2 True local misassembly 144364083 145023287 144377185 145037443 NC_060932.1 CM021575.2 99.51 True local misassembly 145024878 145385766 145037444 145398310 NC_060932.1 CM021575.2 99.7 True indel: indel (> 5bp) 145385871 146259331 145398406 146266741 NC_060932.1 CM021575.2 99.12 True CONTIG CM021575.2 146266741 misassembled 53 1745 53 1739 NC_060933.1 CM021576.2 98.64 True local misassembly 3624 395684 3633 395485 NC_060933.1 CM021576.2 99.62 True local misassembly 400720 4344760 398415 4343567 NC_060933.1 CM021576.2 99.71 True indel: indel (> 5bp) 4344866 4787277 4343689 4786581 NC_060933.1 CM021576.2 99.32 True indel: indel (<= 5bp) 4787361 6384299 4786662 6390384 NC_060933.1 CM021576.2 99.41 True fake: not a misassembly (possible transposable element) 6392777 6395409 6393261 6390629 NC_060933.1 CM021576.2 96.59 True fake: not a misassembly (possible transposable element) 6383972 7740486 6394143 7759997 NC_060933.1 CM021576.2 98.84 True fake: not a misassembly (possible transposable element) 84095967 84099520 7759998 7763551 NC_060932.1 CM021576.2 99.98 True fake: not a misassembly (possible transposable element) 7744075 7951967 7763583 7971833 NC_060933.1 CM021576.2 99.68 True local misassembly 7955850 9958462 7971834 9974408 NC_060933.1 CM021576.2 99.76 True indel: indel (> 5bp) 9958467 14642201 9974460 14660561 NC_060933.1 CM021576.2 99.58 True local misassembly 14642250 16763410 14660726 16775338 NC_060933.1 CM021576.2 99.5 True indel: indel (> 5bp) 16763541 16919644 16775496 16931531 NC_060933.1 CM021576.2 99.6 True local misassembly 16920549 17922115 16932163 17933304 NC_060933.1 CM021576.2 99.83 True local misassembly 17925481 22428282 17933305 22435601 NC_060933.1 CM021576.2 99.73 True indel: indel (> 5bp) 22428363 24105926 22435717 24113300 NC_060933.1 CM021576.2 99.79 True indel: indel (> 5bp) 24106011 25797054 24113379 25804616 NC_060933.1 CM021576.2 99.77 True indel: indel (<= 5bp) 25797236 28201329 25804796 28209002 NC_060933.1 CM021576.2 99.84 True local misassembly 28202842 31399565 28210253 31405932 NC_060933.1 CM021576.2 99.76 True local misassembly 31399714 31636258 31406192 31642780 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 31636364 35514311 31642917 35518617 NC_060933.1 CM021576.2 99.6 True local misassembly 35514707 36020937 35518646 36028668 NC_060933.1 CM021576.2 99.1 True local misassembly 36021314 40141177 36028899 40161924 NC_060933.1 CM021576.2 99.43 True local misassembly 40141571 40320247 40162104 40341024 NC_060933.1 CM021576.2 99.42 True relocation, inconsistency = 9142 40329390 40579345 40341025 40591314 NC_060933.1 CM021576.2 99.48 True relocation, inconsistency = 2044828 42646610 42696403 40640888 40591315 NC_060933.1 CM021576.2 97.84 True relocation, inconsistency = 1447545 40629686 41199064 40640889 41210158 NC_060933.1 CM021576.2 99.6 True indel: indel (> 5bp) 41199139 41432915 41210245 41443198 NC_060933.1 CM021576.2 99.08 True indel: indel (> 5bp) 41433094 41569367 41443407 41580187 NC_060933.1 CM021576.2 99.36 True indel: stretch of mismatches 41569581 41957272 41580401 41970623 NC_060933.1 CM021576.2 98.75 True local misassembly 41957666 44756415 41970728 44769918 NC_060933.1 CM021576.2 99.93 True local misassembly 44754538 44962344 44769919 44977740 NC_060933.1 CM021576.2 99.95 True fake: not a misassembly (possible transposable element) 44998003 44999894 44981267 44983162 NC_060933.1 CM021576.2 96.92 True fake: not a misassembly (possible transposable element) 44968281 44971840 44983163 44986722 NC_060933.1 CM021576.2 99.47 True local misassembly 44971351 44973648 44986911 44989204 NC_060933.1 CM021576.2 99.22 True local misassembly 44968941 44969891 44989932 44990882 NC_060933.1 CM021576.2 99.75 True relocation, inconsistency = 8671 44978563 44982613 44990883 44994932 NC_060933.1 CM021576.2 99.28 True relocation, inconsistency = 7988 44990696 45002776 44995027 45007107 NC_060933.1 CM021576.2 99.68 True local misassembly 44999721 45008839 45007108 45016225 NC_060933.1 CM021576.2 99.69 True local misassembly 45002559 45004807 45016226 45018474 NC_060933.1 CM021576.2 98.74 True relocation, inconsistency = 68513 45073321 45084779 45018475 45029933 NC_060933.1 CM021576.2 99.81 True local misassembly 45087844 45093063 45029934 45035153 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 196846 45291107 45293708 45036351 45038952 NC_060933.1 CM021576.2 99.45 True relocation, inconsistency = -196845 45096864 45113077 45038953 45054486 NC_060933.1 CM021576.2 95.46 True local misassembly 45112670 45113319 45054759 45055408 NC_060933.1 CM021576.2 99.62 True local misassembly 45115872 45123695 45055409 45063235 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = -7824 45115872 45121204 45063236 45068571 NC_060933.1 CM021576.2 99.65 True local misassembly 45126309 45132197 45068572 45074460 NC_060933.1 CM021576.2 97.14 True local misassembly 45138837 45187872 45074461 45123325 NC_060933.1 CM021576.2 99.57 True local misassembly 45194849 45201377 45123326 45129857 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = 431079 45632760 45642827 45130161 45140228 NC_060933.1 CM021576.2 99.61 True relocation, inconsistency = -415767 45227061 45258048 45140229 45171220 NC_060933.1 CM021576.2 99.78 True indel: stretch of mismatches 45258049 45270702 45171221 45183874 NC_060933.1 CM021576.2 99.75 True indel: stretch of mismatches 45270703 45293294 45183875 45206470 NC_060933.1 CM021576.2 99.81 True indel: stretch of mismatches 45293695 45312670 45206871 45225846 NC_060933.1 CM021576.2 99.75 True relocation, inconsistency = 7824 45320495 45329898 45225847 45235250 NC_060933.1 CM021576.2 99.87 True local misassembly 45326666 45334862 45235251 45243447 NC_060933.1 CM021576.2 99.6 True relocation, inconsistency = 77064 45411938 45425972 45243459 45257494 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = 458819 45884792 45888896 45257495 45261599 NC_060933.1 CM021576.2 99.57 True relocation, inconsistency = -463411 45425486 45440681 45261600 45276795 NC_060933.1 CM021576.2 99.84 True local misassembly 45436087 45445447 45276796 45286156 NC_060933.1 CM021576.2 99.79 True relocation, inconsistency = 282892 45728363 45730412 45286180 45288229 NC_060933.1 CM021576.2 99.56 True relocation, inconsistency = -235099 45495409 45503085 45288325 45296005 NC_060933.1 CM021576.2 99.66 True relocation, inconsistency = -56635 45446451 45454986 45296006 45304541 NC_060933.1 CM021576.2 99.74 True local misassembly 45449883 45482387 45304542 45337046 NC_060933.1 CM021576.2 99.85 True relocation, inconsistency = 403870 45886501 45890801 45337290 45341590 NC_060933.1 CM021576.2 99.5 True relocation, inconsistency = -410334 45480468 45484344 45341591 45345467 NC_060933.1 CM021576.2 99.79 True local misassembly 45490809 45510362 45345468 45365022 NC_060933.1 CM021576.2 99.91 True relocation, inconsistency = -9862 45500501 45530655 45365023 45395179 NC_060933.1 CM021576.2 99.8 True local misassembly 45524193 45542997 45395180 45413985 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = 12078 45555076 45563828 45413986 45422738 NC_060933.1 CM021576.2 99.66 True relocation, inconsistency = -371532 45193078 45201599 45423520 45432044 NC_060933.1 CM021576.2 99.72 True relocation, inconsistency = 544212 45745812 45751750 45432045 45437983 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = -123907 45627844 45659252 45437984 45469338 NC_060933.1 CM021576.2 99.62 True relocation, inconsistency = -8168 45651085 45662178 45469339 45480432 NC_060933.1 CM021576.2 98.82 True indel: stretch of mismatches 45662179 45688154 45480433 45506241 NC_060933.1 CM021576.2 99.05 True indel: stretch of mismatches 45688155 45706058 45506242 45524145 NC_060933.1 CM021576.2 99.74 True relocation, inconsistency = 158388 45864447 45870747 45524146 45530445 NC_060933.1 CM021576.2 99.57 True relocation, inconsistency = -409139 45461613 45471679 45530450 45540517 NC_060933.1 CM021576.2 99.63 True relocation, inconsistency = 225747 45697427 45702502 45540518 45545593 NC_060933.1 CM021576.2 99.78 True relocation, inconsistency = -56487 45646016 45652931 45545594 45552509 NC_060933.1 CM021576.2 99.33 True relocation, inconsistency = -175556 45477376 45480485 45552510 45555619 NC_060933.1 CM021576.2 99.68 True local misassembly 45481678 45484344 45555620 45558286 NC_060933.1 CM021576.2 99.8 True local misassembly 45490809 45503085 45558287 45570563 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = 215544 45718630 45734465 45570564 45586400 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 45734713 45745554 45586645 45597486 NC_060933.1 CM021576.2 99.9 True indel: stretch of mismatches 45745555 45751750 45597487 45603682 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = -123907 45627844 45659252 45603683 45635037 NC_060933.1 CM021576.2 99.62 True relocation, inconsistency = -8168 45651085 45666369 45635038 45650322 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = -17696 45648674 45654093 45650323 45655742 NC_060933.1 CM021576.2 99.32 True relocation, inconsistency = -18376 45635718 45639129 45655743 45659153 NC_060933.1 CM021576.2 99.43 True relocation, inconsistency = 39303 45678433 45698067 45659154 45678788 NC_060933.1 CM021576.2 99.77 True relocation, inconsistency = 100375 45798443 45811447 45678789 45691794 NC_060933.1 CM021576.2 99.73 True relocation, inconsistency = -12079 45799369 45800315 45691795 45692741 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = -506621 45293695 45303404 45692742 45702451 NC_060933.1 CM021576.2 99.72 True relocation, inconsistency = 638806 45943251 45964205 45703492 45724275 NC_060933.1 CM021576.2 99.05 True fake: not a misassembly (possible transposable element) 45342914 45344581 45724276 45726018 NC_060933.1 CM021576.2 96.37 True fake: not a misassembly (possible transposable element) 45963906 45967475 45726019 45729588 NC_060933.1 CM021576.2 99.52 True local misassembly 45962448 45963263 45729665 45730480 NC_060933.1 CM021576.2 99.14 True local misassembly 45965136 45968860 45730481 45734205 NC_060933.1 CM021576.2 99.56 True relocation, inconsistency = 23387 45992248 45998050 45734206 45740008 NC_060933.1 CM021576.2 99.43 True local misassembly 45995499 46014664 45740009 45758965 NC_060933.1 CM021576.2 98.69 True local misassembly 46017897 46020413 45758966 45761482 NC_060933.1 CM021576.2 99.19 True local misassembly 46019734 46021993 45761483 45763742 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = 7144 46029138 46046350 45763743 45780954 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = 26370 46072721 46080762 45780955 45788992 NC_060933.1 CM021576.2 99.71 True relocation, inconsistency = 147666 46228429 46232428 45788993 45792992 NC_060933.1 CM021576.2 99.61 True relocation, inconsistency = -50695 46181734 46183611 45792993 45794870 NC_060933.1 CM021576.2 99.93 True local misassembly 46188036 46204073 45794871 45810908 NC_060933.1 CM021576.2 99.81 True relocation, inconsistency = -20922 46183152 46192841 45810909 45820598 NC_060933.1 CM021576.2 99.94 True fake: not a misassembly (possible transposable element) 46151330 46154108 45820599 45823377 NC_060933.1 CM021576.2 99.5 True fake: not a misassembly (possible transposable element) 46199362 46209395 45823378 45833405 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = -62943 46146453 46162217 45833406 45849170 NC_060933.1 CM021576.2 99.63 True relocation, inconsistency = 63623 46225841 46227290 45849171 45850620 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = -53247 46174044 46188417 45850621 45864994 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 152267 46340685 46344326 45864995 45868636 NC_060933.1 CM021576.2 98.91 True relocation, inconsistency = -171323 46173450 46181059 45869083 45876692 NC_060933.1 CM021576.2 99.81 True local misassembly 46183612 46196883 45876693 45889964 NC_060933.1 CM021576.2 99.89 True relocation, inconsistency = -8848 46188036 46204073 45889965 45906002 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = -20922 46183152 46192841 45906003 45915692 NC_060933.1 CM021576.2 99.94 True fake: not a misassembly (possible transposable element) 46151330 46154108 45915693 45918471 NC_060933.1 CM021576.2 99.52 True fake: not a misassembly (possible transposable element) 46199362 46207554 45918472 45926661 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = 20416 46227971 46238881 45926662 45937572 NC_060933.1 CM021576.2 99.66 True relocation, inconsistency = -24840 46222953 46226378 45946484 45949909 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = -37423 46188956 46199814 45949910 45960771 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 39298 46239340 46243676 45960999 45965335 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = -659856 45592263 45593033 45973778 45974548 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = -537485 45055549 45059046 45974549 45978046 NC_060933.1 CM021576.2 99.06 True relocation, inconsistency = 1195466 46254540 46259823 45978074 45983357 NC_060933.1 CM021576.2 99.93 True relocation, inconsistency = 15312 46275136 46294141 45983358 46002363 NC_060933.1 CM021576.2 99.84 True local misassembly 46296694 46299579 46002364 46005249 NC_060933.1 CM021576.2 99.9 True local misassembly 46299580 46316305 46007802 46024527 NC_060933.1 CM021576.2 99.92 True relocation, inconsistency = -8000 46308306 46341273 46024528 46057496 NC_060933.1 CM021576.2 99.7 True fake: not a misassembly (possible transposable element) 46373941 46380059 46057497 46063615 NC_060933.1 CM021576.2 99.18 True fake: not a misassembly (possible transposable element) 46347905 46364538 46063616 46080249 NC_060933.1 CM021576.2 99.81 True local misassembly 46360795 46362179 46080250 46081634 NC_060933.1 CM021576.2 99.22 True relocation, inconsistency = -21268 46340912 46346890 46081635 46087613 NC_060933.1 CM021576.2 99.57 True local misassembly 46347905 46364538 46088626 46105259 NC_060933.1 CM021576.2 99.81 True local misassembly 46360795 46364116 46105260 46108581 NC_060933.1 CM021576.2 99.22 True local misassembly 46369220 46373643 46108582 46113005 NC_060933.1 CM021576.2 99.82 True local misassembly 46369220 46389420 46113006 46133205 NC_060933.1 CM021576.2 99.73 True local misassembly 46388741 46395264 46133206 46139729 NC_060933.1 CM021576.2 99.84 True local misassembly 46400369 46425744 46139730 46165104 NC_060933.1 CM021576.2 99.84 True local misassembly 46421199 46422936 46165664 46167401 NC_060933.1 CM021576.2 99.67 True local misassembly 46428721 46432813 46167402 46171494 NC_060933.1 CM021576.2 99.62 True relocation, inconsistency = 62094 46494908 46527231 46171495 46203138 NC_060933.1 CM021576.2 97.73 True relocation, inconsistency = 51717 46578949 46593519 46203139 46217708 NC_060933.1 CM021576.2 99.88 True fake: not a misassembly (possible transposable element) 46545714 46547395 46217709 46219390 NC_060933.1 CM021576.2 99.7 True fake: not a misassembly (possible transposable element) 46598186 46639563 46222378 46263755 NC_060933.1 CM021576.2 99.93 True relocation, inconsistency = -14119 46625445 46636067 46263756 46274378 NC_060933.1 CM021576.2 99.86 True local misassembly 46636748 46642283 46274379 46279914 NC_060933.1 CM021576.2 99.72 True local misassembly 46642066 46645138 46280377 46283449 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = -11911 46633228 46639011 46283450 46289233 NC_060933.1 CM021576.2 99.75 True relocation, inconsistency = -14119 46624893 46633674 46289234 46298015 NC_060933.1 CM021576.2 99.81 True local misassembly 46636907 46639011 46298016 46300120 NC_060933.1 CM021576.2 99.56 True relocation, inconsistency = -14119 46624893 46636067 46300121 46311295 NC_060933.1 CM021576.2 99.86 True local misassembly 46636748 46639035 46311296 46313583 NC_060933.1 CM021576.2 99.12 True fake: not a misassembly (possible transposable element) 46337233 46339070 46313584 46315421 NC_060933.1 CM021576.2 98.65 True fake: not a misassembly (possible transposable element) 46642066 46655188 46315422 46328543 NC_060933.1 CM021576.2 99.68 True relocation, inconsistency = 36264 46691453 46696389 46328544 46333480 NC_060933.1 CM021576.2 98.37 True relocation, inconsistency = -307956 46388434 46390930 46333481 46335977 NC_060933.1 CM021576.2 99.21 True local misassembly 46388379 46394028 46335978 46341627 NC_060933.1 CM021576.2 99.27 True relocation, inconsistency = 249744 46643773 46648384 46341628 46346239 NC_060933.1 CM021576.2 98.51 True relocation, inconsistency = -260464 46388434 46394028 46346753 46352347 NC_060933.1 CM021576.2 99.3 True relocation, inconsistency = 249744 46643773 46648384 46352348 46356959 NC_060933.1 CM021576.2 98.51 True relocation, inconsistency = 371587 47019972 47022291 46356960 46359279 NC_060933.1 CM021576.2 98.94 True relocation, inconsistency = -331071 46691221 46696389 46359280 46364448 NC_060933.1 CM021576.2 98.35 True relocation, inconsistency = -307956 46388434 46393482 46364449 46369497 NC_060933.1 CM021576.2 99.23 True local misassembly 46388379 46394045 46369498 46375164 NC_060933.1 CM021576.2 98.99 True relocation, inconsistency = 260292 46654338 46664456 46375165 46385282 NC_060933.1 CM021576.2 99.92 True local misassembly 46667862 46670884 46385283 46388307 NC_060933.1 CM021576.2 99.42 True local misassembly 46666801 46673939 46388308 46395446 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = 409009 47082949 47092685 46395447 46405181 NC_060933.1 CM021576.2 99.28 True relocation, inconsistency = -407138 46685603 46701025 46405237 46420660 NC_060933.1 CM021576.2 99.81 True local misassembly 46695239 46700929 46420661 46426351 NC_060933.1 CM021576.2 97.98 True local misassembly 46697527 46704897 46426352 46433722 NC_060933.1 CM021576.2 99.57 True relocation, inconsistency = 27385 46732283 46746457 46433723 46448577 NC_060933.1 CM021576.2 95.27 True local misassembly 46740673 46745157 46448578 46453062 NC_060933.1 CM021576.2 99.86 True local misassembly 46739373 46762873 46453063 46476563 NC_060933.1 CM021576.2 99.83 True local misassembly 46760322 46770048 46476564 46486290 NC_060933.1 CM021576.2 99.69 True local misassembly 46771921 46773420 46486291 46487790 NC_060933.1 CM021576.2 99.45 True relocation, inconsistency = 7656 46781301 46786986 46488015 46493700 NC_060933.1 CM021576.2 99.7 True local misassembly 46781631 46786369 46494639 46499377 NC_060933.1 CM021576.2 99.59 True local misassembly 46784839 46790305 46499378 46504673 NC_060933.1 CM021576.2 96.72 True local misassembly 46789626 46803567 46504674 46518615 NC_060933.1 CM021576.2 99.84 True local misassembly 46798293 46802681 46518616 46523004 NC_060933.1 CM021576.2 99.65 True local misassembly 46800130 46803549 46523005 46526424 NC_060933.1 CM021576.2 99.41 True local misassembly 46806782 46817230 46526425 46536873 NC_060933.1 CM021576.2 99.76 True local misassembly 46818556 46828220 46538542 46548204 NC_060933.1 CM021576.2 99.51 True local misassembly 46829413 46840653 46548205 46559446 NC_060933.1 CM021576.2 99.78 True local misassembly 46842013 46842520 46559447 46559954 NC_060933.1 CM021576.2 99.66 True local misassembly 46837250 46839746 46559955 46562451 NC_060933.1 CM021576.2 99.15 True fake: not a misassembly (possible transposable element) 46883465 46886401 46562452 46565388 NC_060933.1 CM021576.2 99.6 True fake: not a misassembly (possible transposable element) 46839961 46844788 46565389 46570217 NC_060933.1 CM021576.2 98.94 True relocation, inconsistency = -7142 46837647 46838441 46570218 46571012 NC_060933.1 CM021576.2 99.67 True relocation, inconsistency = 110592 46949034 46953624 46571013 46575603 NC_060933.1 CM021576.2 98.5 True relocation, inconsistency = -605683 46348400 46351474 46576062 46579137 NC_060933.1 CM021576.2 99.09 True relocation, inconsistency = 485564 46837039 46838425 46579138 46580524 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = -531506 46306920 46311666 46580525 46585271 NC_060933.1 CM021576.2 99.35 True relocation, inconsistency = 343150 46654817 46655496 46585272 46585951 NC_060933.1 CM021576.2 98.09 True relocation, inconsistency = 195323 46851138 46856307 46586270 46591439 NC_060933.1 CM021576.2 96.01 True relocation, inconsistency = -10040 46846268 46860718 46591440 46606228 NC_060933.1 CM021576.2 97.03 True local misassembly 46860039 46868715 46606229 46614905 NC_060933.1 CM021576.2 99.42 True local misassembly 46866164 46881954 46614906 46630696 NC_060933.1 CM021576.2 99.66 True local misassembly 46879105 46883500 46631080 46635474 NC_060933.1 CM021576.2 99.61 True relocation, inconsistency = 25866 46909367 46919111 46635475 46645219 NC_060933.1 CM021576.2 99.74 True fake: not a misassembly (possible transposable element) 46896259 46901785 46645506 46651032 NC_060933.1 CM021576.2 99.58 True fake: not a misassembly (possible transposable element) 46925406 46929636 46651555 46655785 NC_060933.1 CM021576.2 99.95 True indel: stretch of mismatches 46929965 46947142 46656114 46672611 NC_060933.1 CM021576.2 95.77 True fake: not a misassembly (possible transposable element) 47105884 47107095 46672612 46673823 NC_060933.1 CM021576.2 98.75 True fake: not a misassembly (possible transposable element) 46948355 46960252 46673824 46685722 NC_060933.1 CM021576.2 99.47 True local misassembly 46960815 46987194 46686288 46712667 NC_060933.1 CM021576.2 99.48 True relocation, inconsistency = -1966825 45020370 45022325 46712668 46714623 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = 19705 45042434 45048547 46715027 46721148 NC_060933.1 CM021576.2 98.58 True relocation, inconsistency = 2256235 47304783 47306283 46721149 46722649 NC_060933.1 CM021576.2 98.63 True relocation, inconsistency = -2189021 45122559 45123668 46727946 46729055 NC_060933.1 CM021576.2 99.32 True relocation, inconsistency = 1879915 47003584 47008543 46729056 46734015 NC_060933.1 CM021576.2 99.58 True indel: stretch of mismatches 47008881 47057152 46734353 46782624 NC_060933.1 CM021576.2 99.87 True indel: stretch of mismatches 47057153 47067636 46782625 46793108 NC_060933.1 CM021576.2 99.47 True indel: indel (<= 5bp) 47067968 47078897 46793441 46804370 NC_060933.1 CM021576.2 99.2 True fake: not a misassembly (possible transposable element) 47107996 47109343 46804371 46805719 NC_060933.1 CM021576.2 98.74 True fake: not a misassembly (possible transposable element) 47080310 47085853 46805786 46811329 NC_060933.1 CM021576.2 99.12 True indel: indel (<= 5bp) 47085990 47101743 46811465 46827219 NC_060933.1 CM021576.2 99.38 True indel: stretch of mismatches 47101992 47156255 46827468 46881728 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 47156475 47174855 46881945 46900325 NC_060933.1 CM021576.2 99.98 True indel: indel (<= 5bp) 47175003 47178056 46900476 46903529 NC_060933.1 CM021576.2 99.9 True local misassembly 47179074 47211761 46904548 46937232 NC_060933.1 CM021576.2 99.72 True local misassembly 47212952 47223614 46937233 46947895 NC_060933.1 CM021576.2 98.77 True relocation, inconsistency = 174399 47398014 47411596 46947896 46961478 NC_060933.1 CM021576.2 99.05 True relocation, inconsistency = -173887 47237710 47243549 46961479 46967318 NC_060933.1 CM021576.2 99.61 True local misassembly 47240998 47246134 46967319 46972455 NC_060933.1 CM021576.2 99.79 True local misassembly 47246135 47251106 46974328 46979299 NC_060933.1 CM021576.2 99.34 True local misassembly 47255406 47259817 46979863 46984274 NC_060933.1 CM021576.2 99.5 True fake: not a misassembly (possible transposable element) 47179571 47180481 46984835 46985745 NC_060933.1 CM021576.2 98.75 True fake: not a misassembly (possible transposable element) 47258907 47265109 46985746 46991948 NC_060933.1 CM021576.2 99.83 True local misassembly 47265790 47275431 46991949 47001588 NC_060933.1 CM021576.2 99.37 True fake: not a misassembly (possible transposable element) 47285125 47289784 47001589 47006248 NC_060933.1 CM021576.2 99.3 True fake: not a misassembly (possible transposable element) 47282474 47291531 47006249 47015308 NC_060933.1 CM021576.2 98.93 True relocation, inconsistency = 270747 47563132 47567182 47016162 47020214 NC_060933.1 CM021576.2 96.35 True relocation, inconsistency = -155026 47412678 47426957 47020736 47035356 NC_060933.1 CM021576.2 96.12 True local misassembly 47427587 47434346 47035647 47042281 NC_060933.1 CM021576.2 96.21 True relocation, inconsistency = -112445 47321902 47330239 47042282 47050616 NC_060933.1 CM021576.2 99.54 True local misassembly 47329048 47351855 47050617 47073424 NC_060933.1 CM021576.2 99.39 True relocation, inconsistency = 8680 47360536 47379346 47073425 47092235 NC_060933.1 CM021576.2 99.83 True indel: stretch of mismatches 47379737 47384450 47092626 47097339 NC_060933.1 CM021576.2 99.26 True local misassembly 47383259 47384003 47097340 47098084 NC_060933.1 CM021576.2 99.5 True local misassembly 47384427 47386154 47098676 47100403 NC_060933.1 CM021576.2 99.36 True indel: indel (<= 5bp) 47386317 47393757 47100569 47108009 NC_060933.1 CM021576.2 99.41 True relocation, inconsistency = 14976 47408734 47438713 47108010 47137989 NC_060933.1 CM021576.2 99.19 True relocation, inconsistency = 16680 47455394 47471728 47137990 47154670 NC_060933.1 CM021576.2 95.8 True local misassembly 47474280 47477166 47154671 47157557 NC_060933.1 CM021576.2 99.31 True indel: indel (<= 5bp) 47477167 47477845 47157559 47158237 NC_060933.1 CM021576.2 99.41 True indel: indel (<= 5bp) 47477847 47498184 47158238 47178575 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = 8848 47507304 47508421 47178847 47179964 NC_060933.1 CM021576.2 98.57 True local misassembly 47511907 47513561 47180387 47182041 NC_060933.1 CM021576.2 99.4 True indel: indel (<= 5bp) 47513563 47536569 47182042 47205048 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = -99728 47436842 47441882 47205049 47210089 NC_060933.1 CM021576.2 98.79 True relocation, inconsistency = 106534 47548417 47561518 47210090 47223190 NC_060933.1 CM021576.2 99.72 True local misassembly 47562711 47576986 47223191 47237466 NC_060933.1 CM021576.2 99.76 True local misassembly 47575797 48534140 47237467 48195684 NC_060933.1 CM021576.2 99.93 True local misassembly 48544080 48581450 48204635 48241965 NC_060933.1 CM021576.2 99.67 True relocation, inconsistency = -32910 48548541 48603723 48241966 48297090 NC_060933.1 CM021576.2 99.48 True local misassembly 48604771 48606533 48297758 48299545 NC_060933.1 CM021576.2 97.66 True local misassembly 48613342 48616311 48305801 48308770 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 48616622 48617393 48309071 48309842 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 48617399 48619019 48309843 48311463 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 48619060 48621237 48311524 48313701 NC_060933.1 CM021576.2 100.0 True local misassembly 48622477 48623209 48315021 48315753 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 48623210 48624025 48315774 48316589 NC_060933.1 CM021576.2 99.63 True local misassembly 48625087 48625595 48317656 48318164 NC_060933.1 CM021576.2 99.41 True local misassembly 48626292 48627231 48319211 48320150 NC_060933.1 CM021576.2 99.04 True indel: indel (> 5bp) 48627603 48628621 48320462 48321480 NC_060933.1 CM021576.2 99.31 True indel: indel (<= 5bp) 48628622 48629732 48321486 48322596 NC_060933.1 CM021576.2 99.64 True indel: indel (> 5bp) 48630048 48631260 48322927 48324139 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 48631261 48631814 48324145 48324698 NC_060933.1 CM021576.2 100.0 True local misassembly 48632782 48633642 48325781 48326641 NC_060933.1 CM021576.2 98.72 True relocation, inconsistency = -21191 48614639 48645505 48328829 48359903 NC_060933.1 CM021576.2 98.14 True indel: indel (> 5bp) 48645535 48673884 48359904 48387304 NC_060933.1 CM021576.2 96.12 True local misassembly 48669356 48688559 48387305 48406563 NC_060933.1 CM021576.2 99.32 True local misassembly 48690444 48714724 48406564 48430840 NC_060933.1 CM021576.2 99.43 True local misassembly 48718954 48935717 48430841 48648336 NC_060933.1 CM021576.2 97.46 True relocation, inconsistency = -24503 48912202 48935416 48649324 48672055 NC_060933.1 CM021576.2 97.7 True local misassembly 48930229 48944997 48672056 48686275 NC_060933.1 CM021576.2 97.22 True local misassembly 48939810 48987675 48686276 48734139 NC_060933.1 CM021576.2 99.4 True relocation, inconsistency = 67496 49055172 49068972 48734140 48747920 NC_060933.1 CM021576.2 99.62 True relocation, inconsistency = 13743 49082716 49125647 48747921 48790393 NC_060933.1 CM021576.2 97.37 True local misassembly 49121614 49127522 48790394 48796327 NC_060933.1 CM021576.2 99.47 True local misassembly 49121695 49174854 48796328 48849337 NC_060933.1 CM021576.2 99.38 True relocation, inconsistency = 16498 49199246 49199945 48857231 48857930 NC_060933.1 CM021576.2 99.71 True local misassembly 49201816 49202354 48859826 48860364 NC_060933.1 CM021576.2 99.63 True indel: indel (> 5bp) 49202469 49203208 48860469 48861208 NC_060933.1 CM021576.2 99.59 True local misassembly 49203659 49204210 48861754 48862305 NC_060933.1 CM021576.2 99.46 True local misassembly 49205040 49205637 48863160 48863757 NC_060933.1 CM021576.2 99.67 True local misassembly 49206235 49207123 48864205 48865093 NC_060933.1 CM021576.2 99.78 True relocation, inconsistency = 119268 49332199 49336983 48870901 48875735 NC_060933.1 CM021576.2 95.91 True relocation, inconsistency = -149997 49186987 49193010 48875736 48881799 NC_060933.1 CM021576.2 98.93 True local misassembly 49190498 49204201 48881800 48895456 NC_060933.1 CM021576.2 97.05 True relocation, inconsistency = 20541 49224743 49306088 48895457 48976917 NC_060933.1 CM021576.2 98.66 True relocation, inconsistency = 12698 49318787 49346108 48976918 49004209 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = 8180 49354289 49361439 49004210 49011360 NC_060933.1 CM021576.2 99.04 True local misassembly 49361544 49363330 49013058 49014829 NC_060933.1 CM021576.2 98.99 True local misassembly 49368107 49369213 49014830 49015946 NC_060933.1 CM021576.2 97.17 True local misassembly 49366569 49367786 49016188 49017405 NC_060933.1 CM021576.2 99.75 True relocation, inconsistency = -8236 49359585 49361439 49017440 49019319 NC_060933.1 CM021576.2 98.3 True local misassembly 49361544 49363330 49021032 49022818 NC_060933.1 CM021576.2 98.17 True local misassembly 49368107 49369213 49022819 49023930 NC_060933.1 CM021576.2 97.59 True relocation, inconsistency = 2075297 51444752 51447143 49024172 49026573 NC_060933.1 CM021576.2 98.75 True relocation, inconsistency = -2086620 49361544 49363330 49027594 49029375 NC_060933.1 CM021576.2 98.44 True local misassembly 49368107 49369213 49029376 49030492 NC_060933.1 CM021576.2 97.17 True local misassembly 49366569 49370528 49030734 49034703 NC_060933.1 CM021576.2 99.05 True local misassembly 49366569 49370528 49035612 49039591 NC_060933.1 CM021576.2 99.0 True relocation, inconsistency = 2067875 51438913 51440081 49040101 49041264 NC_060933.1 CM021576.2 98.3 True relocation, inconsistency = -2078538 49361544 49362902 49041265 49042623 NC_060933.1 CM021576.2 97.11 True local misassembly 49357600 49361147 49042624 49046166 NC_060933.1 CM021576.2 99.35 True fake: not a misassembly (possible transposable element) 51441824 51442911 49046167 49047254 NC_060933.1 CM021576.2 99.69 True fake: not a misassembly (possible transposable element) 49359585 49361147 49047255 49048812 NC_060933.1 CM021576.2 99.36 True fake: not a misassembly (possible transposable element) 51441824 51442911 49048813 49049900 NC_060933.1 CM021576.2 99.77 True fake: not a misassembly (possible transposable element) 49359585 49360898 49049901 49051214 NC_060933.1 CM021576.2 99.77 True local misassembly 49366850 49375482 49051215 49059862 NC_060933.1 CM021576.2 97.52 True local misassembly 49373284 49385245 49059863 49071914 NC_060933.1 CM021576.2 98.18 True local misassembly 49378957 49392898 49071915 49085851 NC_060933.1 CM021576.2 99.28 True local misassembly 49388908 49389582 49086328 49087002 NC_060933.1 CM021576.2 97.33 True relocation, inconsistency = 2077472 51471287 51471805 49091235 49091753 NC_060933.1 CM021576.2 99.42 True local misassembly 51471911 51472494 49091754 49092337 NC_060933.1 CM021576.2 99.32 True local misassembly 51471911 51472494 49095986 49096569 NC_060933.1 CM021576.2 99.32 True local misassembly 51471287 51471805 49099694 49100212 NC_060933.1 CM021576.2 99.61 True local misassembly 51472725 51473237 49101022 49101534 NC_060933.1 CM021576.2 99.22 True local misassembly 51474546 51476082 49102424 49103960 NC_060933.1 CM021576.2 99.41 True local misassembly 51473044 51474006 49104037 49104983 NC_060933.1 CM021576.2 96.38 True local misassembly 51472067 51472724 49107411 49108068 NC_060933.1 CM021576.2 99.7 True local misassembly 51474546 51475269 49109516 49110239 NC_060933.1 CM021576.2 99.59 True indel: indel (> 5bp) 51475325 51476177 49110240 49111092 NC_060933.1 CM021576.2 99.53 True local misassembly 51476721 51477719 49111616 49112614 NC_060933.1 CM021576.2 99.7 True indel: stretch of mismatches 51477895 51478493 49112790 49113388 NC_060933.1 CM021576.2 99.5 True local misassembly 51481031 51483631 49113440 49116055 NC_060933.1 CM021576.2 98.59 True local misassembly 51483501 51489417 49117476 49123378 NC_060933.1 CM021576.2 97.99 True local misassembly 51484982 51485494 49123379 49123891 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 51485805 51486937 49124197 49125329 NC_060933.1 CM021576.2 99.91 True local misassembly 51488023 51489274 49126395 49127646 NC_060933.1 CM021576.2 99.28 True local misassembly 51489769 51490277 49128152 49128660 NC_060933.1 CM021576.2 99.8 True local misassembly 51490534 51491142 49129087 49129695 NC_060933.1 CM021576.2 99.18 True local misassembly 51491427 51492563 49130784 49131920 NC_060933.1 CM021576.2 99.65 True local misassembly 51493097 51493805 49132444 49133152 NC_060933.1 CM021576.2 99.86 True local misassembly 51494497 51495607 49134303 49135413 NC_060933.1 CM021576.2 99.64 True indel: indel (<= 5bp) 51495608 51496696 49135419 49136507 NC_060933.1 CM021576.2 99.63 True local misassembly 51497650 51498298 49137456 49138104 NC_060933.1 CM021576.2 99.54 True local misassembly 51499313 51499840 49139109 49139636 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 51499956 51500469 49139833 49140346 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 51500470 51502005 49140377 49141912 NC_060933.1 CM021576.2 99.48 True indel: indel (<= 5bp) 51502006 51502525 49141918 49142437 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 51502531 51503170 49142438 49143077 NC_060933.1 CM021576.2 99.69 True indel: indel (<= 5bp) 51503176 51504658 49143078 49144560 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 51504669 51505888 49144561 49145780 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = -2113479 49392873 49412300 49146244 49165676 NC_060933.1 CM021576.2 99.48 True local misassembly 49410214 49433515 49165677 49189058 NC_060933.1 CM021576.2 99.08 True relocation, inconsistency = 24000 49457516 49518663 49189059 49250244 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = 2068951 51587615 51588378 49250245 49251008 NC_060933.1 CM021576.2 99.62 True indel: indel (<= 5bp) 51588384 51589102 49251009 49251727 NC_060933.1 CM021576.2 99.3 True indel: indel (> 5bp) 51589276 51590155 49251916 49252795 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 51590156 51591472 49252801 49254117 NC_060933.1 CM021576.2 99.7 True indel: indel (> 5bp) 51591888 51592541 49254498 49255151 NC_060933.1 CM021576.2 99.24 True local misassembly 51593972 51594637 49256552 49257217 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 51594643 51595173 49257218 49257748 NC_060933.1 CM021576.2 99.44 True indel: stretch of mismatches 51595440 51596133 49258015 49258708 NC_060933.1 CM021576.2 99.28 True relocation, inconsistency = -2065611 49531257 49557346 49259443 49285523 NC_060933.1 CM021576.2 99.39 True relocation, inconsistency = 2049447 51609512 51611708 49288242 49290438 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 51611714 51612337 49290439 49291062 NC_060933.1 CM021576.2 100.0 True local misassembly 51612892 51614352 49291622 49293082 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 51614358 51615461 49293083 49294186 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 51615462 51616155 49294192 49294885 NC_060933.1 CM021576.2 99.28 True local misassembly 51616739 51617431 49295374 49296066 NC_060933.1 CM021576.2 99.71 True indel: indel (> 5bp) 51617590 51618281 49296235 49296926 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = 12849 51632719 51647028 49298515 49312924 NC_060933.1 CM021576.2 97.51 True relocation, inconsistency = -7616 51639413 51641925 49312925 49315442 NC_060933.1 CM021576.2 96.54 True relocation, inconsistency = -2070041 49571885 49584460 49315443 49327888 NC_060933.1 CM021576.2 97.14 True relocation, inconsistency = 15765 49600226 49620336 49327889 49348024 NC_060933.1 CM021576.2 99.5 True local misassembly 49621729 49687958 49348567 49414899 NC_060933.1 CM021576.2 98.9 True relocation, inconsistency = 2098755 51786714 51795947 49414900 49423958 NC_060933.1 CM021576.2 97.0 True relocation, inconsistency = -2096180 49699768 49732597 49423959 49457033 NC_060933.1 CM021576.2 98.6 True local misassembly 49733785 49753650 49457034 49477143 NC_060933.1 CM021576.2 97.77 True relocation, inconsistency = 2082436 51836087 51840916 49477144 49482002 NC_060933.1 CM021576.2 95.92 True local misassembly 51836055 51838301 49482003 49484220 NC_060933.1 CM021576.2 96.49 True relocation, inconsistency = -2085204 49753613 49789974 49484736 49521457 NC_060933.1 CM021576.2 98.45 True local misassembly 49791043 49825432 49521458 49555877 NC_060933.1 CM021576.2 98.69 True relocation, inconsistency = 1005564 50830997 50833318 49555878 49558152 NC_060933.1 CM021576.2 97.15 True local misassembly 50834033 50834790 49558861 49559618 NC_060933.1 CM021576.2 98.03 True relocation, inconsistency = -1005414 49829490 49871579 49559732 49601779 NC_060933.1 CM021576.2 99.3 True fake: not a misassembly (possible transposable element) 50868204 50869680 49601865 49603341 NC_060933.1 CM021576.2 98.85 True fake: not a misassembly (possible transposable element) 49874176 49916646 49604157 49646592 NC_060933.1 CM021576.2 99.66 True relocation, inconsistency = 956258 50872905 50880374 49646593 49654082 NC_060933.1 CM021576.2 97.84 True relocation, inconsistency = -827976 50052399 50053972 49654083 49655661 NC_060933.1 CM021576.2 95.6 True relocation, inconsistency = 1848987 51906948 51907746 49659650 49660423 NC_060933.1 CM021576.2 97.65 True relocation, inconsistency = -1977302 49930445 49952933 49660424 49682897 NC_060933.1 CM021576.2 99.45 True relocation, inconsistency = 9481 49962415 49963173 49682898 49683546 NC_060933.1 CM021576.2 97.81 True indel: indel (> 5bp) 49963482 49964231 49683831 49684585 NC_060933.1 CM021576.2 98.68 True relocation, inconsistency = -9515 49957464 49987724 49687333 49717638 NC_060933.1 CM021576.2 99.41 True local misassembly 49988730 50003749 49718709 49733723 NC_060933.1 CM021576.2 99.63 True fake: not a misassembly (possible transposable element) 50087350 50092254 49733737 49738641 NC_060933.1 CM021576.2 99.61 True fake: not a misassembly (possible transposable element) 50008890 50022156 49738753 49752111 NC_060933.1 CM021576.2 98.54 True local misassembly 50026164 50059775 49755978 49789509 NC_060933.1 CM021576.2 99.2 True local misassembly 50055867 50056520 49791525 49792183 NC_060933.1 CM021576.2 98.48 True local misassembly 50063438 50092254 49793086 49821724 NC_060933.1 CM021576.2 98.6 True fake: not a misassembly (possible transposable element) 50001607 50003053 49821836 49823277 NC_060933.1 CM021576.2 98.76 True fake: not a misassembly (possible transposable element) 50098118 50117670 49827540 49847077 NC_060933.1 CM021576.2 99.16 True local misassembly 50118246 50218389 49847638 49947796 NC_060933.1 CM021576.2 99.73 True local misassembly 50219244 50252591 49948665 49982038 NC_060933.1 CM021576.2 99.0 True local misassembly 50253654 50287439 49983078 50016827 NC_060933.1 CM021576.2 99.2 True local misassembly 50288748 50332953 50018137 50061943 NC_060933.1 CM021576.2 98.38 True indel: indel (> 5bp) 50333469 50370598 50062441 50099579 NC_060933.1 CM021576.2 98.77 True indel: indel (<= 5bp) 50370885 50572765 50099870 50301595 NC_060933.1 CM021576.2 99.48 True fake: not a misassembly (possible transposable element) 50326981 50331463 50301596 50306088 NC_060933.1 CM021576.2 97.03 True fake: not a misassembly (possible transposable element) 50580869 50594287 50306089 50319522 NC_060933.1 CM021576.2 99.3 True local misassembly 50595740 50599554 50320826 50324655 NC_060933.1 CM021576.2 98.88 True local misassembly 50600416 50662357 50325532 50387259 NC_060933.1 CM021576.2 99.18 True fake: not a misassembly (possible transposable element) 50397645 50399506 50389752 50391603 NC_060933.1 CM021576.2 99.14 True fake: not a misassembly (possible transposable element) 50666790 50723385 50391645 50448279 NC_060933.1 CM021576.2 99.4 True indel: indel (> 5bp) 50723669 50741417 50448548 50466132 NC_060933.1 CM021576.2 97.28 True local misassembly 50743592 50793306 50468300 50518019 NC_060933.1 CM021576.2 99.8 True local misassembly 50793362 50797458 50518815 50522905 NC_060933.1 CM021576.2 97.96 True local misassembly 50802698 50855484 50527013 50579807 NC_060933.1 CM021576.2 99.1 True local misassembly 50857201 50873310 50581398 50597501 NC_060933.1 CM021576.2 99.61 True local misassembly 50877068 50890152 50597502 50610606 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = 1020926 51911079 51911751 50610607 50611279 NC_060933.1 CM021576.2 98.53 True relocation, inconsistency = -1690226 50221526 50224096 50611280 50613835 NC_060933.1 CM021576.2 96.67 True relocation, inconsistency = -193699 50030398 50036567 50613836 50620065 NC_060933.1 CM021576.2 97.21 True relocation, inconsistency = 566860 50603428 50604854 50620066 50621492 NC_060933.1 CM021576.2 99.24 True local misassembly 50605872 50606401 50622751 50623280 NC_060933.1 CM021576.2 99.25 True indel: indel (<= 5bp) 50606402 50607508 50623286 50624392 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 50607514 50608018 50624393 50624897 NC_060933.1 CM021576.2 99.6 True relocation, inconsistency = -567681 50040669 50059205 50625229 50643934 NC_060933.1 CM021576.2 97.54 True relocation, inconsistency = 1939344 51998550 52002243 50643935 50647598 NC_060933.1 CM021576.2 98.42 True relocation, inconsistency = -68575 51933669 51938516 50647599 50652456 NC_060933.1 CM021576.2 98.6 True relocation, inconsistency = -1583809 50354708 50356802 50652457 50654545 NC_060933.1 CM021576.2 97.4 True relocation, inconsistency = 534953 50892486 50893252 50655276 50656042 NC_060933.1 CM021576.2 99.61 True local misassembly 50893253 50894124 50656273 50657144 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 50894125 50894964 50657160 50657999 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 50894970 50895494 50658000 50658524 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = -274453 50621047 50640401 50658530 50677985 NC_060933.1 CM021576.2 98.04 True relocation, inconsistency = 260741 50901143 50916536 50677986 50693464 NC_060933.1 CM021576.2 99.01 True relocation, inconsistency = -172067 50744470 50759305 50693465 50708410 NC_060933.1 CM021576.2 98.4 True relocation, inconsistency = -127952 50631555 50640286 50708612 50717348 NC_060933.1 CM021576.2 98.25 True relocation, inconsistency = 260746 50901033 50923171 50717349 50739562 NC_060933.1 CM021576.2 99.0 True local misassembly 50928472 50929281 50741139 50741948 NC_060933.1 CM021576.2 99.75 True local misassembly 50927561 50967649 50743696 50783740 NC_060933.1 CM021576.2 98.17 True local misassembly 50970967 50972888 50786891 50788796 NC_060933.1 CM021576.2 95.96 True local misassembly 50974821 50986060 50790704 50801928 NC_060933.1 CM021576.2 99.17 True local misassembly 50993168 51014686 50809076 50830479 NC_060933.1 CM021576.2 98.93 True indel: indel (> 5bp) 51014925 51054331 50830688 50870025 NC_060933.1 CM021576.2 98.83 True fake: not a misassembly (possible transposable element) 55536272 55536826 50874746 50875285 NC_060933.1 CM021576.2 95.14 True fake: not a misassembly (possible transposable element) 51058420 51058990 50877467 50878037 NC_060933.1 CM021576.2 98.95 True local misassembly 51063005 51113456 50878497 50928949 NC_060933.1 CM021576.2 98.99 True local misassembly 51115123 51115930 50930632 50931424 NC_060933.1 CM021576.2 95.05 True indel: indel (> 5bp) 51116168 51139104 50931697 50954643 NC_060933.1 CM021576.2 99.89 True local misassembly 51140877 51144669 50956351 50960128 NC_060933.1 CM021576.2 98.84 True local misassembly 51146734 51164144 50962045 50979490 NC_060933.1 CM021576.2 99.43 True local misassembly 51166840 51180087 50982087 50995324 NC_060933.1 CM021576.2 99.36 True local misassembly 51182127 51249441 50997181 51064740 NC_060933.1 CM021576.2 98.56 True local misassembly 51250192 51252571 51065161 51067530 NC_060933.1 CM021576.2 96.47 True relocation, inconsistency = -11661 51240945 51243092 51067565 51069697 NC_060933.1 CM021576.2 98.74 True relocation, inconsistency = 51351 51299416 51300400 51074670 51075650 NC_060933.1 CM021576.2 98.08 True fake: not a misassembly (possible transposable element) 51260678 51267415 51075652 51082414 NC_060933.1 CM021576.2 98.15 True fake: not a misassembly (possible transposable element) 51310046 51313487 51082930 51086371 NC_060933.1 CM021576.2 98.61 True fake: not a misassembly (possible transposable element) 51230206 51233416 51086372 51089646 NC_060933.1 CM021576.2 95.32 True fake: not a misassembly (possible transposable element) 51311010 51312223 51089647 51090817 NC_060933.1 CM021576.2 95.96 True relocation, inconsistency = -36269 51275955 51294412 51090818 51109271 NC_060933.1 CM021576.2 99.01 True local misassembly 51297429 51303790 51112265 51118673 NC_060933.1 CM021576.2 97.03 True local misassembly 51309932 51310456 51119023 51119547 NC_060933.1 CM021576.2 99.62 True local misassembly 51312049 51312612 51121035 51121598 NC_060933.1 CM021576.2 97.89 True fake: not a misassembly (possible transposable element) 51265594 51266917 51122472 51123789 NC_060933.1 CM021576.2 99.34 True fake: not a misassembly (possible transposable element) 51309068 51435975 51123790 51250733 NC_060933.1 CM021576.2 98.96 True local misassembly 51440131 51447746 51254845 51262420 NC_060933.1 CM021576.2 99.09 True indel: indel (<= 5bp) 51447846 51460887 51262525 51275436 NC_060933.1 CM021576.2 97.97 True local misassembly 51462349 51480775 51276883 51295294 NC_060933.1 CM021576.2 99.14 True local misassembly 51483152 51485732 51297516 51300091 NC_060933.1 CM021576.2 96.13 True indel: indel (> 5bp) 51485846 51489804 51300195 51304163 NC_060933.1 CM021576.2 97.21 True fake: not a misassembly (possible transposable element) 51504159 51504921 51305143 51305905 NC_060933.1 CM021576.2 98.69 True fake: not a misassembly (possible transposable element) 51492309 51513059 51306492 51327236 NC_060933.1 CM021576.2 99.62 True local misassembly 51516354 51550646 51330531 51364968 NC_060933.1 CM021576.2 98.99 True indel: indel (> 5bp) 51550977 51599341 51365283 51413658 NC_060933.1 CM021576.2 99.14 True local misassembly 51600029 51633457 51414409 51447840 NC_060933.1 CM021576.2 99.11 True local misassembly 51634629 51656624 51448993 51470978 NC_060933.1 CM021576.2 97.32 True local misassembly 51660144 51664404 51474403 51478603 NC_060933.1 CM021576.2 97.73 True fake: not a misassembly (possible transposable element) 50340203 50340911 51482684 51481956 NC_060933.1 CM021576.2 96.02 True fake: not a misassembly (possible transposable element) 51682148 51683864 51491052 51492778 NC_060933.1 CM021576.2 98.56 True local misassembly 51688214 51690580 51492834 51495195 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = -9368 51681348 51682889 51495331 51496872 NC_060933.1 CM021576.2 99.35 True indel: stretch of mismatches 51682980 51690580 51496963 51504638 NC_060933.1 CM021576.2 98.32 True local misassembly 51692075 51706871 51506088 51520889 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = -20306 51686566 51687280 51520890 51521604 NC_060933.1 CM021576.2 99.87 True local misassembly 51687281 51687976 51521695 51522390 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 51688316 51690580 51522718 51524966 NC_060933.1 CM021576.2 98.9 True local misassembly 51691879 51699489 51526395 51534010 NC_060933.1 CM021576.2 99.67 True relocation, inconsistency = 20669 51722805 51743916 51536657 51557763 NC_060933.1 CM021576.2 99.9 True fake: not a misassembly (possible transposable element) 51694479 51699446 51558944 51563928 NC_060933.1 CM021576.2 99.36 True fake: not a misassembly (possible transposable element) 51749939 51808625 51563929 51622666 NC_060933.1 CM021576.2 99.46 True relocation, inconsistency = 13416 51822042 51822740 51622667 51623365 NC_060933.1 CM021576.2 95.03 True relocation, inconsistency = -2093306 49732933 49734157 51626864 51627928 NC_060933.1 CM021576.2 96.17 True relocation, inconsistency = 2079767 51813925 51838631 51627929 51652675 NC_060933.1 CM021576.2 98.84 True fake: not a misassembly (possible transposable element) 51846756 51849918 51652676 51655743 NC_060933.1 CM021576.2 96.07 True fake: not a misassembly (possible transposable element) 51841839 51845574 51655744 51659459 NC_060933.1 CM021576.2 98.85 True local misassembly 51846715 51854278 51660630 51668173 NC_060933.1 CM021576.2 99.26 True local misassembly 51857106 51868818 51670947 51682565 NC_060933.1 CM021576.2 98.53 True local misassembly 51873741 51889228 51687625 51702642 NC_060933.1 CM021576.2 95.94 True local misassembly 51890914 51917757 51704595 51731413 NC_060933.1 CM021576.2 99.28 True relocation, inconsistency = -1678557 50239201 50242727 51731414 51734957 NC_060933.1 CM021576.2 95.81 True relocation, inconsistency = 486417 50729649 50730391 51735462 51736204 NC_060933.1 CM021576.2 97.58 True relocation, inconsistency = 1192162 51923100 51926949 51736751 51740585 NC_060933.1 CM021576.2 98.76 True relocation, inconsistency = -1051011 50875939 50880374 51740586 51745096 NC_060933.1 CM021576.2 97.09 True relocation, inconsistency = -143827 50736548 50738427 51745097 51746956 NC_060933.1 CM021576.2 97.93 True relocation, inconsistency = 1194772 51933200 51967522 51746957 51781244 NC_060933.1 CM021576.2 99.17 True local misassembly 51968011 51995869 51781763 51809646 NC_060933.1 CM021576.2 98.24 True local misassembly 51996934 52068419 51810628 51882314 NC_060933.1 CM021576.2 98.92 True local misassembly 52069847 52098750 51883677 51912574 NC_060933.1 CM021576.2 98.77 True local misassembly 52104430 52170609 51918037 51984111 NC_060933.1 CM021576.2 99.08 True local misassembly 52171290 52183841 51984902 51997423 NC_060933.1 CM021576.2 99.01 True fake: not a misassembly (possible transposable element) 60901774 60905321 52000426 52004018 NC_060933.1 CM021576.2 98.14 True fake: not a misassembly (possible transposable element) 52190212 52209641 52004019 52023427 NC_060933.1 CM021576.2 99.1 True indel: indel (> 5bp) 52209966 52232844 52023702 52046590 NC_060933.1 CM021576.2 99.22 True local misassembly 52235435 52236356 52049064 52049980 NC_060933.1 CM021576.2 97.72 True local misassembly 52240365 52241194 52053685 52054513 NC_060933.1 CM021576.2 98.19 True local misassembly 52242079 52364147 52055239 52177633 NC_060933.1 CM021576.2 99.09 True relocation, inconsistency = 16222298 68587030 68591396 52178218 52182492 NC_060933.1 CM021576.2 95.43 True relocation, inconsistency = -10625948 57966805 57967745 52183849 52184810 NC_060933.1 CM021576.2 95.24 True relocation, inconsistency = -5596463 52375881 52407302 52189409 52220825 NC_060933.1 CM021576.2 99.71 True local misassembly 52408251 52409493 52221812 52223059 NC_060933.1 CM021576.2 95.95 True indel: indel (> 5bp) 52409685 52442692 52223261 52256202 NC_060933.1 CM021576.2 99.03 True indel: indel (<= 5bp) 52442895 52456478 52256406 52269979 NC_060933.1 CM021576.2 99.07 True local misassembly 52458255 52504525 52271725 52317950 NC_060933.1 CM021576.2 99.35 True local misassembly 52507564 52545485 52320955 52358767 NC_060933.1 CM021576.2 99.44 True indel: indel (> 5bp) 52545787 52587116 52358994 52400328 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 52587208 52613935 52400425 52427142 NC_060933.1 CM021576.2 99.73 True local misassembly 52614874 52632040 52428112 52445187 NC_060933.1 CM021576.2 98.16 True fake: not a misassembly (possible transposable element) 73783778 73784581 52445834 52446638 NC_060933.1 CM021576.2 97.87 True fake: not a misassembly (possible transposable element) 52633342 52694712 52446639 52507704 NC_060933.1 CM021576.2 98.57 True indel: indel (> 5bp) 52694960 52712886 52507945 52525822 NC_060933.1 CM021576.2 99.08 True indel: indel (> 5bp) 52713048 52735421 52526004 52548407 NC_060933.1 CM021576.2 98.25 True indel: indel (<= 5bp) 52735511 52752558 52548498 52565290 NC_060933.1 CM021576.2 97.89 True indel: indel (> 5bp) 52752767 52753953 52565485 52566681 NC_060933.1 CM021576.2 98.33 True indel: indel (> 5bp) 52754036 52780869 52566784 52593823 NC_060933.1 CM021576.2 98.61 True local misassembly 52781631 52800069 52594582 52613056 NC_060933.1 CM021576.2 98.32 True local misassembly 52801554 52868696 52614450 52681474 NC_060933.1 CM021576.2 98.44 True local misassembly 52873457 52885411 52686213 52698167 NC_060933.1 CM021576.2 99.84 True local misassembly 52888061 52947803 52700742 52760520 NC_060933.1 CM021576.2 99.27 True local misassembly 52949418 53001506 52762040 52814048 NC_060933.1 CM021576.2 99.3 True indel: indel (> 5bp) 53001738 53003853 52814255 52816310 NC_060933.1 CM021576.2 95.94 True local misassembly 53005928 53013353 52818266 52825611 NC_060933.1 CM021576.2 98.52 True local misassembly 53018556 53108723 52830491 52920753 NC_060933.1 CM021576.2 98.63 True indel: indel (<= 5bp) 53109093 53111586 52921118 52923598 NC_060933.1 CM021576.2 96.99 True indel: indel (> 5bp) 53111973 53114931 52923975 52926933 NC_060933.1 CM021576.2 99.22 True indel: indel (<= 5bp) 53115098 53130350 52927099 52942276 NC_060933.1 CM021576.2 98.71 True local misassembly 53135520 53136101 52944116 52944697 NC_060933.1 CM021576.2 97.94 True local misassembly 53134021 53163035 52945712 52974577 NC_060933.1 CM021576.2 99.07 True fake: not a misassembly (possible transposable element) 53156329 53162293 52975829 52981812 NC_060933.1 CM021576.2 96.91 True fake: not a misassembly (possible transposable element) 53171690 53178413 52983118 52989782 NC_060933.1 CM021576.2 98.01 True local misassembly 53179883 53225005 52991188 53036384 NC_060933.1 CM021576.2 99.17 True local misassembly 53229255 53254205 53040514 53065509 NC_060933.1 CM021576.2 99.05 True local misassembly 53255625 53293577 53066904 53104846 NC_060933.1 CM021576.2 99.74 True local misassembly 53294322 53316376 53105562 53127556 NC_060933.1 CM021576.2 98.95 True indel: indel (> 5bp) 53316801 53423760 53128016 53234976 NC_060933.1 CM021576.2 99.22 True local misassembly 53427284 53485475 53238471 53296427 NC_060933.1 CM021576.2 99.06 True local misassembly 53487441 53488930 53298209 53299692 NC_060933.1 CM021576.2 96.72 True local misassembly 53490934 53498126 53301781 53308973 NC_060933.1 CM021576.2 98.89 True local misassembly 53499050 53507626 53309888 53318459 NC_060933.1 CM021576.2 99.07 True indel: indel (<= 5bp) 53507917 53509342 53318751 53320136 NC_060933.1 CM021576.2 96.21 True local misassembly 53510401 53543349 53321151 53353847 NC_060933.1 CM021576.2 98.47 True local misassembly 53544184 53566672 53354744 53377197 NC_060933.1 CM021576.2 99.28 True local misassembly 53569415 53572361 53380081 53383046 NC_060933.1 CM021576.2 96.23 True local misassembly 53573320 53575148 53384048 53385872 NC_060933.1 CM021576.2 95.3 True indel: indel (> 5bp) 53575599 53582720 53386249 53393320 NC_060933.1 CM021576.2 98.29 True local misassembly 53584230 53590668 53394892 53401325 NC_060933.1 CM021576.2 99.18 True local misassembly 53591497 53621395 53402155 53432033 NC_060933.1 CM021576.2 98.72 True fake: not a misassembly (possible transposable element) 53606046 53610666 53432034 53436584 NC_060933.1 CM021576.2 97.62 True fake: not a misassembly (possible transposable element) 53626121 53633538 53436585 53444067 NC_060933.1 CM021576.2 98.25 True fake: not a misassembly (possible transposable element) 62367548 62368569 53444875 53445891 NC_060933.1 CM021576.2 99.22 True fake: not a misassembly (possible transposable element) 53636385 53652988 53446893 53463481 NC_060933.1 CM021576.2 99.4 True local misassembly 53654788 53668038 53465335 53478350 NC_060933.1 CM021576.2 96.09 True local misassembly 53671148 53688445 53481163 53498455 NC_060933.1 CM021576.2 99.28 True relocation, inconsistency = 1996500 55685692 55686514 53499202 53500029 NC_060933.1 CM021576.2 98.19 True relocation, inconsistency = 3989686 59679238 59679888 53503067 53503717 NC_060933.1 CM021576.2 97.24 True relocation, inconsistency = 13770082 73451424 73452000 53505171 53505732 NC_060933.1 CM021576.2 95.22 True relocation, inconsistency = -19756292 53695709 53736381 53505733 53546374 NC_060933.1 CM021576.2 99.49 True local misassembly 53739758 53813219 53549796 53623232 NC_060933.1 CM021576.2 99.67 True indel: indel (<= 5bp) 53813376 53847396 53623384 53657404 NC_060933.1 CM021576.2 99.84 True local misassembly 53848084 53856392 53658118 53666426 NC_060933.1 CM021576.2 99.56 True indel: indel (> 5bp) 53856582 53858737 53666597 53668747 NC_060933.1 CM021576.2 98.42 True local misassembly 53863412 53864337 53673443 53674368 NC_060933.1 CM021576.2 98.92 True indel: indel (> 5bp) 53864787 53865443 53674772 53675428 NC_060933.1 CM021576.2 99.39 True local misassembly 53867086 53867838 53677026 53677778 NC_060933.1 CM021576.2 98.67 True local misassembly 53869653 53871228 53679311 53680901 NC_060933.1 CM021576.2 98.3 True indel: indel (> 5bp) 53871381 53873410 53681009 53683048 NC_060933.1 CM021576.2 97.8 True fake: not a misassembly (possible transposable element) 56033762 56034283 53686657 53686136 NC_060933.1 CM021576.2 98.28 True fake: not a misassembly (possible transposable element) 53878079 53944099 53687546 53753447 NC_060933.1 CM021576.2 98.99 True local misassembly 53948388 53950709 53757730 53760052 NC_060933.1 CM021576.2 97.86 True local misassembly 53953357 53959045 53762611 53768299 NC_060933.1 CM021576.2 98.4 True local misassembly 53960583 53974629 53769767 53783758 NC_060933.1 CM021576.2 98.47 True local misassembly 53975967 53978803 53784997 53787824 NC_060933.1 CM021576.2 97.22 True local misassembly 53982040 54077104 53791163 53886043 NC_060933.1 CM021576.2 99.24 True indel: indel (> 5bp) 54077493 54117740 53886401 53926583 NC_060933.1 CM021576.2 99.06 True local misassembly 54119393 54203349 53928308 54012173 NC_060933.1 CM021576.2 99.65 True indel: indel (<= 5bp) 54203812 54206117 54012632 54014932 NC_060933.1 CM021576.2 98.27 True local misassembly 54207769 54221037 54016589 54029867 NC_060933.1 CM021576.2 98.97 True local misassembly 54223534 54284843 54032360 54093330 NC_060933.1 CM021576.2 98.94 True fake: not a misassembly (possible transposable element) 67836681 67838103 54094730 54093331 NC_060933.1 CM021576.2 96.48 True fake: not a misassembly (possible transposable element) 54287817 54296331 54096272 54104790 NC_060933.1 CM021576.2 96.67 True indel: indel (<= 5bp) 54296532 54361305 54104990 54169685 NC_060933.1 CM021576.2 99.5 True local misassembly 54362605 54363184 54170925 54171504 NC_060933.1 CM021576.2 96.55 True local misassembly 54363757 54418274 54172047 54226535 NC_060933.1 CM021576.2 99.63 True local misassembly 54425025 54426189 54232988 54234139 NC_060933.1 CM021576.2 96.51 True indel: indel (> 5bp) 54426436 54439485 54234351 54247354 NC_060933.1 CM021576.2 95.4 True local misassembly 54442096 54643263 54250014 54451148 NC_060933.1 CM021576.2 99.78 True local misassembly 54644236 54671013 54452061 54478923 NC_060933.1 CM021576.2 97.91 True relocation, inconsistency = 18274187 72945201 72948551 54482150 54478924 NC_060933.1 CM021576.2 95.19 True indel: indel (> 5bp) 72944373 72944997 54483023 54482379 NC_060933.1 CM021576.2 96.28 True relocation, inconsistency = 18232118 54675127 54712216 54483062 54520026 NC_060933.1 CM021576.2 97.52 True local misassembly 54714184 54726716 54521944 54534495 NC_060933.1 CM021576.2 98.86 True local misassembly 54728376 54741924 54536239 54549762 NC_060933.1 CM021576.2 97.5 True local misassembly 54743938 54781221 54551615 54588670 NC_060933.1 CM021576.2 98.36 True local misassembly 54782205 54846454 54589521 54653725 NC_060933.1 CM021576.2 99.58 True local misassembly 54849262 54857223 54656408 54664315 NC_060933.1 CM021576.2 97.88 True indel: indel (> 5bp) 54857439 54859545 54664541 54666667 NC_060933.1 CM021576.2 95.0 True fake: not a misassembly (possible transposable element) 53893826 53894764 54668036 54668974 NC_060933.1 CM021576.2 96.42 True fake: not a misassembly (possible transposable element) 54863120 54867893 54670313 54675091 NC_060933.1 CM021576.2 97.66 True local misassembly 54869858 54870416 54676850 54677408 NC_060933.1 CM021576.2 98.39 True local misassembly 54871236 54873847 54678270 54680836 NC_060933.1 CM021576.2 95.51 True indel: indel (> 5bp) 54874002 54894233 54681006 54701153 NC_060933.1 CM021576.2 98.37 True local misassembly 54895445 54896029 54702376 54702945 NC_060933.1 CM021576.2 96.75 True local misassembly 54897049 54966037 54703923 54772797 NC_060933.1 CM021576.2 98.53 True indel: indel (> 5bp) 54966588 54980713 54773293 54787197 NC_060933.1 CM021576.2 96.8 True fake: not a misassembly (possible transposable element) 71939609 71940195 54788104 54787518 NC_060933.1 CM021576.2 98.64 True fake: not a misassembly (possible transposable element) 54986652 54988058 54792842 54794247 NC_060933.1 CM021576.2 96.87 True indel: indel (> 5bp) 54988540 55118117 54794718 54924259 NC_060933.1 CM021576.2 99.79 True relocation, inconsistency = 16604359 71723313 71724800 54926603 54925096 NC_060933.1 CM021576.2 97.69 True relocation, inconsistency = 236309 71483684 71484985 54928622 54929953 NC_060933.1 CM021576.2 96.11 True relocation, inconsistency = -4684313 66801784 66802341 54931065 54931622 NC_060933.1 CM021576.2 97.85 True local misassembly 66803203 66804080 54932459 54933341 NC_060933.1 CM021576.2 95.47 True relocation, inconsistency = -11676878 55127203 55145005 54933342 54951029 NC_060933.1 CM021576.2 98.37 True local misassembly 55146743 55173743 54952834 54979805 NC_060933.1 CM021576.2 99.65 True indel: indel (> 5bp) 55174026 55191710 54980073 54997747 NC_060933.1 CM021576.2 99.87 True local misassembly 55192508 55225955 54998575 55032062 NC_060933.1 CM021576.2 98.75 True indel: indel (> 5bp) 55226122 55293458 55032279 55099574 NC_060933.1 CM021576.2 99.65 True local misassembly 55294895 55326780 55101050 55133100 NC_060933.1 CM021576.2 98.24 True local misassembly 55332082 55352215 55137922 55157959 NC_060933.1 CM021576.2 97.59 True local misassembly 55345806 55358132 55158410 55170322 NC_060933.1 CM021576.2 95.68 True relocation, inconsistency = -9352 55348781 55360514 55170323 55181941 NC_060933.1 CM021576.2 96.65 True relocation, inconsistency = -31645 55328870 55329679 55181942 55182741 NC_060933.1 CM021576.2 98.32 True relocation, inconsistency = 17627050 72958993 72961601 55185005 55187603 NC_060933.1 CM021576.2 99.01 True relocation, inconsistency = -17595198 55366404 55371865 55187604 55193065 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = 18224934 73596800 73599327 55193066 55195543 NC_060933.1 CM021576.2 97.71 True local misassembly 73600303 73601191 55196584 55197472 NC_060933.1 CM021576.2 99.55 True relocation, inconsistency = -18224578 55382752 55384758 55203611 55205617 NC_060933.1 CM021576.2 98.31 True indel: indel (> 5bp) 55384870 55399598 55205704 55220514 NC_060933.1 CM021576.2 97.82 True indel: indel (> 5bp) 55399956 55411508 55220907 55232449 NC_060933.1 CM021576.2 98.11 True local misassembly 55412848 55413666 55233696 55234514 NC_060933.1 CM021576.2 99.76 True local misassembly 55414225 55489739 55235229 55310558 NC_060933.1 CM021576.2 99.11 True local misassembly 55491254 55492066 55312133 55312950 NC_060933.1 CM021576.2 96.94 True local misassembly 55492648 55523423 55313443 55344093 NC_060933.1 CM021576.2 98.49 True fake: not a misassembly (possible transposable element) 71642607 71643534 55345605 55344684 NC_060933.1 CM021576.2 95.95 True fake: not a misassembly (possible transposable element) 55527341 55606236 55347794 55426836 NC_060933.1 CM021576.2 99.17 True local misassembly 55607794 55635052 55428427 55455680 NC_060933.1 CM021576.2 99.5 True local misassembly 55635525 55637984 55456218 55458627 NC_060933.1 CM021576.2 97.36 True local misassembly 55641714 55661994 55462180 55482120 NC_060933.1 CM021576.2 96.89 True local misassembly 55665457 55688469 55485288 55508145 NC_060933.1 CM021576.2 97.79 True local misassembly 55690943 55699048 55510540 55518640 NC_060933.1 CM021576.2 98.9 True indel: stretch of mismatches 55699161 55700106 55518753 55519713 NC_060933.1 CM021576.2 95.84 True local misassembly 55701519 55702106 55521095 55521682 NC_060933.1 CM021576.2 98.64 True local misassembly 55703184 55706831 55522677 55526344 NC_060933.1 CM021576.2 98.61 True local misassembly 55708793 55726408 55528368 55545569 NC_060933.1 CM021576.2 96.84 True indel: indel (> 5bp) 55726627 55728388 55545798 55547569 NC_060933.1 CM021576.2 98.31 True local misassembly 55729430 55732967 55548762 55552304 NC_060933.1 CM021576.2 98.99 True local misassembly 55733888 55737290 55553099 55556481 NC_060933.1 CM021576.2 97.21 True indel: indel (> 5bp) 55737517 55751056 55556668 55570162 NC_060933.1 CM021576.2 99.5 True local misassembly 55752394 55807135 55571466 55626193 NC_060933.1 CM021576.2 99.57 True indel: indel (> 5bp) 55807652 55813600 55626690 55632777 NC_060933.1 CM021576.2 96.42 True relocation, inconsistency = 15953996 71767597 71771728 55636923 55632778 NC_060933.1 CM021576.2 98.76 True fake: not a misassembly (possible transposable element) 74617892 74619651 55638673 55636924 NC_060933.1 CM021576.2 99.16 True fake: not a misassembly (possible transposable element) 71769552 71771761 55641239 55639030 NC_060933.1 CM021576.2 98.92 True relocation, inconsistency = 15945836 55822638 55823572 55641383 55642317 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 55824012 55824627 55642741 55643351 NC_060933.1 CM021576.2 95.78 True indel: indel (> 5bp) 55824814 55838984 55643552 55657632 NC_060933.1 CM021576.2 96.41 True local misassembly 55840170 55862456 55658818 55681109 NC_060933.1 CM021576.2 99.4 True local misassembly 55863297 55922755 55681944 55741472 NC_060933.1 CM021576.2 99.41 True local misassembly 55925619 55926154 55744345 55744880 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 55926155 55927254 55744882 55745981 NC_060933.1 CM021576.2 99.36 True indel: indel (<= 5bp) 55927255 55927921 55745987 55746653 NC_060933.1 CM021576.2 99.4 True indel: indel (> 5bp) 55928082 55928872 55746804 55747594 NC_060933.1 CM021576.2 99.62 True indel: indel (<= 5bp) 55928873 55929508 55747600 55748235 NC_060933.1 CM021576.2 99.21 True fake: not a misassembly (possible transposable element) 53862287 53863165 55752526 55753379 NC_060933.1 CM021576.2 96.13 True fake: not a misassembly (possible transposable element) 55939191 56161000 55757749 55979485 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 2791165 58953934 58954489 55981254 55981814 NC_060933.1 CM021576.2 98.04 True relocation, inconsistency = 12767879 71723628 71724817 55984274 55983074 NC_060933.1 CM021576.2 97.26 True relocation, inconsistency = 2196396 69524948 69526323 55985183 55986538 NC_060933.1 CM021576.2 96.67 True relocation, inconsistency = -13358555 56168693 56254184 55987463 56072922 NC_060933.1 CM021576.2 99.4 True local misassembly 56254632 56261289 56073258 56079904 NC_060933.1 CM021576.2 96.8 True local misassembly 56262600 56307702 56080990 56125963 NC_060933.1 CM021576.2 99.13 True local misassembly 56310877 56517345 56129141 56335505 NC_060933.1 CM021576.2 99.77 True local misassembly 56521932 56522890 56340189 56341147 NC_060933.1 CM021576.2 98.75 True indel: indel (> 5bp) 56523392 56523910 56341569 56342087 NC_060933.1 CM021576.2 98.65 True local misassembly 56524494 56525180 56342761 56343447 NC_060933.1 CM021576.2 99.42 True fake: not a misassembly (possible transposable element) 51843189 51843692 56345854 56345336 NC_060933.1 CM021576.2 96.53 True fake: not a misassembly (possible transposable element) 56529599 56588148 56347713 56406048 NC_060933.1 CM021576.2 99.29 True relocation, inconsistency = 16955084 73545668 73546771 56409597 56408484 NC_060933.1 CM021576.2 97.4 True local misassembly 73540085 73541204 56415118 56414009 NC_060933.1 CM021576.2 97.41 True relocation, inconsistency = 20398973 53135853 53137159 56419071 56420397 NC_060933.1 CM021576.2 98.42 True relocation, inconsistency = 20431719 73573660 73574807 56426326 56425179 NC_060933.1 CM021576.2 99.74 True local misassembly 73571895 73572470 56428195 56427635 NC_060933.1 CM021576.2 95.56 True relocation, inconsistency = 16935244 56611171 56636650 56428196 56453664 NC_060933.1 CM021576.2 99.73 True local misassembly 56637539 56641766 56454552 56458764 NC_060933.1 CM021576.2 95.69 True indel: indel (<= 5bp) 56642007 56670869 56459001 56487684 NC_060933.1 CM021576.2 98.42 True local misassembly 56670921 56672251 56489468 56490808 NC_060933.1 CM021576.2 97.33 True local misassembly 56675227 56675793 56491861 56492427 NC_060933.1 CM021576.2 99.82 True local misassembly 56676737 56677264 56493351 56493878 NC_060933.1 CM021576.2 99.43 True indel: indel (> 5bp) 56677461 56677973 56494085 56494597 NC_060933.1 CM021576.2 99.22 True indel: indel (> 5bp) 56678449 56682967 56495083 56499601 NC_060933.1 CM021576.2 99.31 True indel: indel (> 5bp) 56683424 56689203 56500068 56505847 NC_060933.1 CM021576.2 99.46 True indel: indel (<= 5bp) 56689209 56696225 56505848 56512864 NC_060933.1 CM021576.2 99.9 True local misassembly 56700578 56702125 56517143 56518687 NC_060933.1 CM021576.2 96.28 True indel: indel (<= 5bp) 56702183 56711500 56518740 56528049 NC_060933.1 CM021576.2 98.5 True local misassembly 56712319 56721630 56528817 56538128 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = 10568622 67290938 67292226 56538814 56540095 NC_060933.1 CM021576.2 97.07 True relocation, inconsistency = 11685 67305800 67307472 56541984 56543651 NC_060933.1 CM021576.2 97.39 True relocation, inconsistency = -10580145 56727442 56731345 56543766 56547578 NC_060933.1 CM021576.2 95.12 True local misassembly 56732764 56759836 56549012 56575967 NC_060933.1 CM021576.2 98.28 True local misassembly 56758859 56777708 56575968 56595116 NC_060933.1 CM021576.2 97.59 True relocation, inconsistency = 10607930 67388456 67394319 56597934 56603762 NC_060933.1 CM021576.2 96.16 True relocation, inconsistency = -15984 67378336 67379584 56603763 56605016 NC_060933.1 CM021576.2 98.96 True relocation, inconsistency = 50300 67432621 67434833 56607753 56609970 NC_060933.1 CM021576.2 97.27 True relocation, inconsistency = -10692486 56745334 56747673 56612957 56615295 NC_060933.1 CM021576.2 97.62 True relocation, inconsistency = 35397 56783852 56786352 56616077 56618547 NC_060933.1 CM021576.2 95.61 True relocation, inconsistency = 10564650 67351526 67352541 56619071 56620096 NC_060933.1 CM021576.2 96.69 True relocation, inconsistency = -13123310 54229884 54230918 56620749 56621788 NC_060933.1 CM021576.2 96.84 True relocation, inconsistency = 2514000 56745334 56747673 56622204 56624533 NC_060933.1 CM021576.2 97.62 True relocation, inconsistency = 35442 56785617 56786348 56627035 56627766 NC_060933.1 CM021576.2 99.32 True indel: stretch of mismatches 56786445 56787090 56627863 56628508 NC_060933.1 CM021576.2 98.61 True local misassembly 56788243 56789003 56629766 56630526 NC_060933.1 CM021576.2 99.08 True relocation, inconsistency = -11921 56777679 56778969 56631123 56632413 NC_060933.1 CM021576.2 99.77 True relocation, inconsistency = 31091 56811560 56812063 56633913 56634416 NC_060933.1 CM021576.2 98.02 True local misassembly 56812723 56813271 56634931 56635479 NC_060933.1 CM021576.2 99.45 True indel: stretch of mismatches 56813692 56814533 56635900 56636741 NC_060933.1 CM021576.2 98.93 True local misassembly 56816630 56817523 56638863 56639756 NC_060933.1 CM021576.2 99.22 True relocation, inconsistency = -50431 56768774 56769296 56641438 56641960 NC_060933.1 CM021576.2 99.24 True relocation, inconsistency = 10610571 67379899 67382083 56641992 56644181 NC_060933.1 CM021576.2 98.36 True local misassembly 67383038 67395598 56645035 56657605 NC_060933.1 CM021576.2 99.43 True local misassembly 67399777 67400709 56657606 56658533 NC_060933.1 CM021576.2 99.3 True local misassembly 67408188 67411785 56659942 56663560 NC_060933.1 CM021576.2 96.01 True relocation, inconsistency = -8584 67403202 67403820 56663561 56664179 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 67403826 67405698 56664180 56666052 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 67405958 67406512 56666317 56666871 NC_060933.1 CM021576.2 99.82 True indel: stretch of mismatches 67406809 67407913 56667168 56668272 NC_060933.1 CM021576.2 99.64 True local misassembly 67408526 67410452 56668890 56670816 NC_060933.1 CM021576.2 99.69 True local misassembly 67417179 67422807 56670890 56676548 NC_060933.1 CM021576.2 99.02 True relocation, inconsistency = -10612071 56810737 56818456 56676549 56684303 NC_060933.1 CM021576.2 99.0 True relocation, inconsistency = 10592961 67411418 67412324 56684304 56685210 NC_060933.1 CM021576.2 99.9 True relocation, inconsistency = 31263 67443588 67501816 56685211 56743218 NC_060933.1 CM021576.2 98.93 True relocation, inconsistency = -16786690 50720677 50723482 56748769 56751535 NC_060933.1 CM021576.2 96.03 True relocation, inconsistency = -112478 50612507 50613054 56753038 56753585 NC_060933.1 CM021576.2 97.45 True fake: not a misassembly (possible transposable element) 49954357 49955155 56756119 56756902 NC_060933.1 CM021576.2 95.52 True fake: not a misassembly (possible transposable element) 50612507 50613054 56757387 56757934 NC_060933.1 CM021576.2 97.45 True relocation, inconsistency = -375542 50239932 50240844 56760354 56761251 NC_060933.1 CM021576.2 95.53 True relocation, inconsistency = 6641790 56883910 56886988 56762527 56765630 NC_060933.1 CM021576.2 95.89 True local misassembly 56890433 56902284 56765776 56778031 NC_060933.1 CM021576.2 96.43 True local misassembly 56904879 56912837 56779065 56787058 NC_060933.1 CM021576.2 98.54 True relocation, inconsistency = 10619155 67531993 67551776 56787059 56806457 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = -10615458 56936319 56937518 56806458 56807657 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 56938009 56939482 56808148 56809621 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 56939493 56941073 56809622 56811202 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 56941084 56941882 56811203 56812001 NC_060933.1 CM021576.2 99.75 True indel: indel (<= 5bp) 56941888 56942945 56812002 56813059 NC_060933.1 CM021576.2 99.91 True local misassembly 56943677 56949233 56813796 56819352 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 56949234 56950598 56819358 56820722 NC_060933.1 CM021576.2 100.0 True local misassembly 56951363 56952034 56821452 56822123 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 56952035 56953425 56822129 56823519 NC_060933.1 CM021576.2 99.78 True indel: indel (<= 5bp) 56953431 56954468 56823520 56824557 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 56954469 56955364 56824563 56825458 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 56955370 56956251 56825459 56826340 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 56956609 56957215 56826683 56827289 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 56957216 56961663 56827300 56831747 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 56961669 56962228 56831748 56832307 NC_060933.1 CM021576.2 99.46 True indel: indel (<= 5bp) 56962234 56963092 56832308 56833166 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 56963497 56964008 56833641 56834152 NC_060933.1 CM021576.2 99.41 True local misassembly 56965337 56966386 56834793 56835842 NC_060933.1 CM021576.2 100.0 True local misassembly 56968438 56970194 56837019 56838775 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 56970200 56971475 56838776 56840051 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 56971481 56972079 56840052 56840650 NC_060933.1 CM021576.2 99.67 True local misassembly 56979297 56979876 56840894 56841473 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 56980207 56980790 56841814 56842397 NC_060933.1 CM021576.2 99.83 True indel: stretch of mismatches 56981045 56982216 56842652 56843823 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 56982217 56983406 56843834 56845023 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 56983486 56986360 56845093 56847967 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 56986366 56986880 56847968 56848482 NC_060933.1 CM021576.2 100.0 True local misassembly 56988064 56989480 56849651 56851067 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 56989486 56991078 56851068 56852660 NC_060933.1 CM021576.2 99.94 True local misassembly 56992389 56993604 56854055 56855270 NC_060933.1 CM021576.2 99.34 True indel: indel (<= 5bp) 56994040 56995003 56855701 56856664 NC_060933.1 CM021576.2 99.07 True indel: indel (> 5bp) 56995004 56996369 56856675 56858040 NC_060933.1 CM021576.2 99.85 True indel: indel (> 5bp) 56996380 56997962 56858041 56859623 NC_060933.1 CM021576.2 99.68 True indel: indel (> 5bp) 56997963 57007177 56859639 56868853 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 57007178 57016933 56868859 56878614 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 57016944 57026514 56878615 56888185 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 57026525 57029893 56888186 56891554 NC_060933.1 CM021576.2 99.73 True indel: indel (<= 5bp) 57030200 57031139 56891860 56892799 NC_060933.1 CM021576.2 98.89 True relocation, inconsistency = 18281856 75312996 75317154 56892800 56896963 NC_060933.1 CM021576.2 97.27 True local misassembly 75317767 75323360 56897607 56903030 NC_060933.1 CM021576.2 95.71 True relocation, inconsistency = -18282040 57041321 57071806 56903031 56933506 NC_060933.1 CM021576.2 98.27 True local misassembly 57076792 57077490 56938219 56938917 NC_060933.1 CM021576.2 99.0 True local misassembly 57079437 57080005 56941036 56941604 NC_060933.1 CM021576.2 99.3 True fake: not a misassembly (possible transposable element) 74082471 74085309 56946741 56943898 NC_060933.1 CM021576.2 95.1 True fake: not a misassembly (possible transposable element) 57085115 57086910 56946742 56948523 NC_060933.1 CM021576.2 95.94 True indel: indel (> 5bp) 57087336 57103399 56948929 56964912 NC_060933.1 CM021576.2 98.32 True indel: indel (> 5bp) 57103527 57105063 56965005 56966540 NC_060933.1 CM021576.2 97.21 True indel: indel (> 5bp) 57105398 57125796 56966825 56987073 NC_060933.1 CM021576.2 96.43 True local misassembly 57127366 57128098 56988569 56989301 NC_060933.1 CM021576.2 99.18 True local misassembly 57128961 57133715 56990344 56995099 NC_060933.1 CM021576.2 97.48 True local misassembly 57134010 57143353 56995250 57004518 NC_060933.1 CM021576.2 97.46 True local misassembly 57144506 57146117 57005775 57007384 NC_060933.1 CM021576.2 97.15 True local misassembly 57147662 57193446 57008993 57054792 NC_060933.1 CM021576.2 99.69 True local misassembly 57194987 57232239 57056218 57093508 NC_060933.1 CM021576.2 99.32 True indel: indel (> 5bp) 57232480 57267862 57093760 57128883 NC_060933.1 CM021576.2 98.83 True local misassembly 57264405 57268173 57128951 57132719 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 57268179 57268703 57132720 57133244 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 57268769 57270470 57133315 57135016 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 57270476 57272026 57135017 57136567 NC_060933.1 CM021576.2 99.94 True indel: stretch of mismatches 57272202 57272806 57136743 57137347 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 57272807 57275052 57137373 57139618 NC_060933.1 CM021576.2 99.69 True indel: indel (<= 5bp) 57275053 57276432 57139624 57141003 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 57276443 57277793 57141004 57142354 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 57277799 57280802 57142355 57145358 NC_060933.1 CM021576.2 99.73 True indel: indel (> 5bp) 57280988 57282380 57145554 57146946 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 57282386 57284231 57146947 57148792 NC_060933.1 CM021576.2 99.89 True relocation, inconsistency = 15171 57299866 57300893 57149256 57150283 NC_060933.1 CM021576.2 99.81 True relocation, inconsistency = 10597101 67898051 67915478 57150340 57167807 NC_060933.1 CM021576.2 99.18 True relocation, inconsistency = -10577633 57337846 57360843 57167808 57190750 NC_060933.1 CM021576.2 99.31 True local misassembly 57362798 57363411 57192734 57193342 NC_060933.1 CM021576.2 97.72 True indel: indel (<= 5bp) 57363912 57376012 57193839 57205909 NC_060933.1 CM021576.2 98.54 True relocation, inconsistency = 10625374 68001387 68018590 57205910 57223258 NC_060933.1 CM021576.2 97.95 True relocation, inconsistency = 5099536 62892756 62901850 57232398 57223259 NC_060933.1 CM021576.2 97.69 True relocation, inconsistency = 5487215 57404710 57405365 57232574 57233229 NC_060933.1 CM021576.2 99.85 True indel: indel (> 5bp) 57405406 57406009 57233230 57233833 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 57406270 57406882 57234084 57234696 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 57407113 57408065 57234932 57235884 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 57408071 57408963 57235885 57236777 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 57408969 57410622 57236778 57238431 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 57411094 57414539 57238888 57242333 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = 10625771 68040720 68062591 57242743 57264510 NC_060933.1 CM021576.2 97.67 True fake: not a misassembly (possible transposable element) 68045890 68048220 57264511 57266836 NC_060933.1 CM021576.2 98.38 True fake: not a misassembly (possible transposable element) 68058472 68060150 57266837 57268530 NC_060933.1 CM021576.2 98.41 True local misassembly 68062539 68063110 57268782 57269353 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68063121 68065266 57269354 57271499 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 68065272 68066453 57271500 57272681 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68066454 68067347 57272687 57273580 NC_060933.1 CM021576.2 99.89 True indel: stretch of mismatches 68067428 68069115 57273661 57275348 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 68069480 68070303 57275713 57276536 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 68070309 68070901 57276537 57277129 NC_060933.1 CM021576.2 99.66 True indel: indel (<= 5bp) 68070902 68072283 57277135 57278516 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68072284 68073457 57278527 57279700 NC_060933.1 CM021576.2 99.66 True indel: indel (<= 5bp) 68073463 68074685 57279701 57280923 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 68074696 68076081 57280924 57282309 NC_060933.1 CM021576.2 99.93 True local misassembly 68077759 68079490 57282970 57284701 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 68079491 68080611 57284707 57285827 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 68080612 68081300 57285838 57286526 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68081311 68083540 57286527 57288756 NC_060933.1 CM021576.2 99.73 True indel: indel (<= 5bp) 68083541 68084185 57288762 57289406 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = 5216499 62865863 62866737 57290585 57289711 NC_060933.1 CM021576.2 99.77 True local misassembly 62863093 62864699 57293345 57291739 NC_060933.1 CM021576.2 99.81 True local misassembly 62860616 62862034 57296271 57294853 NC_060933.1 CM021576.2 99.79 True indel: indel (> 5bp) 62859500 62860452 57297417 57296465 NC_060933.1 CM021576.2 99.69 True indel: indel (<= 5bp) 62858649 62859494 57298263 57297418 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 62857480 62858165 57299442 57298757 NC_060933.1 CM021576.2 99.71 True indel: indel (> 5bp) 62856516 62857213 57300396 57299699 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = 5339194 57467549 57515629 57302089 57349740 NC_060933.1 CM021576.2 97.35 True local misassembly 57509297 57517032 57349741 57357446 NC_060933.1 CM021576.2 96.24 True local misassembly 57510505 57517032 57357447 57363959 NC_060933.1 CM021576.2 96.75 True relocation, inconsistency = 10638407 68155440 68195262 57363960 57403127 NC_060933.1 CM021576.2 95.9 True relocation, inconsistency = 5357135 62795836 62797475 57405596 57403957 NC_060933.1 CM021576.2 99.76 True local misassembly 62793511 62794512 57407957 57406956 NC_060933.1 CM021576.2 99.6 True local misassembly 62792425 62793079 57408639 57407985 NC_060933.1 CM021576.2 99.39 True indel: indel (> 5bp) 62791860 62792424 57409214 57408650 NC_060933.1 CM021576.2 99.47 True local misassembly 62789626 62790458 57411458 57410626 NC_060933.1 CM021576.2 99.64 True indel: indel (<= 5bp) 62788688 62789191 57412391 57411888 NC_060933.1 CM021576.2 99.6 True local misassembly 62787694 62788687 57413739 57412746 NC_060933.1 CM021576.2 99.8 True indel: indel (> 5bp) 62786487 62787458 57414961 57413990 NC_060933.1 CM021576.2 99.79 True local misassembly 62784693 62785666 57416760 57415787 NC_060933.1 CM021576.2 99.79 True local misassembly 62782121 62783501 57419562 57418182 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = -18530 62799787 62800286 57420426 57419927 NC_060933.1 CM021576.2 99.6 True local misassembly 62797960 62798923 57422273 57421310 NC_060933.1 CM021576.2 99.69 True indel: indel (> 5bp) 62795842 62797533 57424401 57422710 NC_060933.1 CM021576.2 99.76 True local misassembly 62793511 62794512 57426763 57425762 NC_060933.1 CM021576.2 99.8 True local misassembly 62792425 62793079 57427445 57426791 NC_060933.1 CM021576.2 99.24 True indel: indel (> 5bp) 62791860 62792424 57428020 57427456 NC_060933.1 CM021576.2 99.47 True local misassembly 62789626 62790458 57430269 57429437 NC_060933.1 CM021576.2 99.64 True indel: indel (<= 5bp) 62788387 62789191 57431503 57430699 NC_060933.1 CM021576.2 99.5 True indel: indel (<= 5bp) 62787694 62788386 57432201 57431509 NC_060933.1 CM021576.2 99.86 True local misassembly 62784693 62785666 57435158 57434185 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 62784118 62784692 57435738 57435164 NC_060933.1 CM021576.2 98.96 True relocation, inconsistency = 5201090 57573227 57582774 57435985 57445781 NC_060933.1 CM021576.2 97.14 True relocation, inconsistency = 10623928 68206703 68258746 57445782 57498264 NC_060933.1 CM021576.2 97.54 True relocation, inconsistency = -10654732 57604015 57606685 57498265 57500960 NC_060933.1 CM021576.2 95.43 True local misassembly 57605132 57612924 57500961 57508548 NC_060933.1 CM021576.2 96.14 True relocation, inconsistency = 3503466 54071159 54101665 57539564 57508549 NC_060933.1 CM021576.2 96.37 True relocation, inconsistency = 3607293 57709582 57714697 57540188 57545398 NC_060933.1 CM021576.2 97.32 True relocation, inconsistency = 11775754 69490843 69499759 57554756 57545790 NC_060933.1 CM021576.2 98.37 True relocation, inconsistency = 11775644 57712128 57714573 57555382 57557802 NC_060933.1 CM021576.2 96.28 True local misassembly 57715194 57728720 57558223 57571694 NC_060933.1 CM021576.2 98.98 True relocation, inconsistency = -20453 57708299 57711707 57571726 57575244 NC_060933.1 CM021576.2 95.73 True local misassembly 57712128 57714573 57575875 57578295 NC_060933.1 CM021576.2 96.28 True local misassembly 57715194 57748508 57578716 57612419 NC_060933.1 CM021576.2 97.81 True relocation, inconsistency = 11691933 69440442 69443044 57615032 57612420 NC_060933.1 CM021576.2 97.33 True relocation, inconsistency = -442505 69879445 69880234 57618534 57617745 NC_060933.1 CM021576.2 99.49 True indel: indel (> 5bp) 69878764 69879429 57619200 57618535 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 69878152 69878763 57619817 57619206 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 69877579 69878151 57620395 57619823 NC_060933.1 CM021576.2 98.95 True indel: indel (> 5bp) 69876581 69877119 57621373 57620835 NC_060933.1 CM021576.2 99.63 True indel: indel (> 5bp) 69875489 69876112 57622480 57621857 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 69874705 69875488 57623269 57622486 NC_060933.1 CM021576.2 99.62 True indel: indel (<= 5bp) 69874045 69874699 57623924 57623270 NC_060933.1 CM021576.2 99.39 True relocation, inconsistency = 1466714 68400026 68403156 57628099 57631229 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68403162 68404279 57631230 57632347 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 68404285 68406976 57632348 57635039 NC_060933.1 CM021576.2 99.93 True indel: indel (> 5bp) 68407471 68408323 57635469 57636321 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 68408324 68409560 57636327 57637563 NC_060933.1 CM021576.2 99.92 True relocation, inconsistency = 1462590 69872346 69873095 57638508 57637759 NC_060933.1 CM021576.2 99.47 True indel: indel (<= 5bp) 69871366 69871988 57639493 57638871 NC_060933.1 CM021576.2 99.36 True indel: indel (<= 5bp) 69870743 69871365 57640121 57639499 NC_060933.1 CM021576.2 99.04 True local misassembly 69869479 69870206 57641405 57640678 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = 1456502 68409561 68410224 57644158 57644821 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 68410230 68411191 57644822 57645783 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68411192 68412594 57645799 57647201 NC_060933.1 CM021576.2 99.93 True indel: stretch of mismatches 68412845 68413683 57647452 57648290 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68413689 68416978 57648291 57651580 NC_060933.1 CM021576.2 99.76 True indel: indel (<= 5bp) 68417393 68418221 57652000 57652828 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 68418232 68419900 57652829 57654497 NC_060933.1 CM021576.2 99.76 True indel: indel (<= 5bp) 68419906 68420593 57654498 57655185 NC_060933.1 CM021576.2 99.71 True indel: indel (> 5bp) 68420848 68421965 57655425 57656542 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 68421966 68423083 57656548 57657665 NC_060933.1 CM021576.2 99.73 True indel: stretch of mismatches 68423403 68424288 57657985 57658870 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68424294 68425341 57658871 57659918 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 68425342 68427090 57659924 57661672 NC_060933.1 CM021576.2 99.89 True indel: stretch of mismatches 68427246 68429145 57661828 57663727 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = -10619029 57810117 57817959 57663728 57671530 NC_060933.1 CM021576.2 95.8 True relocation, inconsistency = 10628498 68446458 68499318 57671531 57724823 NC_060933.1 CM021576.2 98.31 True relocation, inconsistency = -10633253 57866066 57869070 57724824 57727869 NC_060933.1 CM021576.2 96.88 True relocation, inconsistency = 8858 57877929 57908476 57727870 57758417 NC_060933.1 CM021576.2 99.96 True local misassembly 57911934 57919063 57762092 57769224 NC_060933.1 CM021576.2 99.04 True fake: not a misassembly (possible transposable element) 68545728 68547643 57770868 57772788 NC_060933.1 CM021576.2 99.07 True fake: not a misassembly (possible transposable element) 57923291 57931218 57773421 57781353 NC_060933.1 CM021576.2 99.57 True fake: not a misassembly (possible transposable element) 74967933 74971015 57784456 57781369 NC_060933.1 CM021576.2 97.01 True fake: not a misassembly (possible transposable element) 57934514 58002083 57784457 57851914 NC_060933.1 CM021576.2 99.4 True relocation, inconsistency = -36013 57967287 57967891 57853131 57853735 NC_060933.1 CM021576.2 98.35 True local misassembly 57969535 57971150 57855073 57856708 NC_060933.1 CM021576.2 95.67 True local misassembly 57972081 57974890 57857444 57860215 NC_060933.1 CM021576.2 96.29 True relocation, inconsistency = 35410 58011309 58077446 57861224 57927237 NC_060933.1 CM021576.2 99.4 True fake: not a misassembly (possible transposable element) 61156436 61157635 57927238 57928442 NC_060933.1 CM021576.2 95.7 True fake: not a misassembly (possible transposable element) 58080908 58082157 57930604 57931853 NC_060933.1 CM021576.2 100.0 True local misassembly 58083125 58087901 57932773 57937549 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 58087902 58088503 57937555 57938156 NC_060933.1 CM021576.2 99.67 True indel: indel (<= 5bp) 58088504 58089554 57938162 57939212 NC_060933.1 CM021576.2 99.62 True local misassembly 58090268 58095171 57939861 57944764 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 58095662 58098265 57945265 57947868 NC_060933.1 CM021576.2 99.77 True indel: indel (<= 5bp) 58098271 58099811 57947869 57949409 NC_060933.1 CM021576.2 99.61 True indel: indel (> 5bp) 58100331 58100879 57949874 57950422 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 58100885 58101834 57950423 57951372 NC_060933.1 CM021576.2 99.79 True local misassembly 58103088 58104459 57952741 57954112 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 58104460 58105348 57954118 57955006 NC_060933.1 CM021576.2 99.78 True indel: indel (<= 5bp) 58105349 58107539 57955012 57957202 NC_060933.1 CM021576.2 99.73 True indel: indel (> 5bp) 58107540 58108781 57957213 57958454 NC_060933.1 CM021576.2 99.68 True relocation, inconsistency = 15280 58124062 58125686 57958455 57960079 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 58125692 58126449 57960080 57960837 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 58126555 58127413 57960888 57961746 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 58127414 58128625 57961757 57962968 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 58128917 58129578 57963345 57964006 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 58129584 58131125 57964007 57965548 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 58131131 58132304 57965549 57966722 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 10620190 68752930 68767066 57967158 57981364 NC_060933.1 CM021576.2 98.26 True local misassembly 68768077 68780637 57982845 57995524 NC_060933.1 CM021576.2 98.32 True fake: not a misassembly (possible transposable element) 58162476 58163892 57995825 57997236 NC_060933.1 CM021576.2 98.24 True fake: not a misassembly (possible transposable element) 68791113 68792525 58000118 58001504 NC_060933.1 CM021576.2 97.4 True relocation, inconsistency = 15566 68808092 68848873 58001505 58042275 NC_060933.1 CM021576.2 99.3 True local misassembly 68845857 68846851 58043039 58044047 NC_060933.1 CM021576.2 97.43 True fake: not a misassembly (possible transposable element) 72522814 72523363 58044171 58044720 NC_060933.1 CM021576.2 98.55 True fake: not a misassembly (possible transposable element) 68850010 68850893 58045265 58046148 NC_060933.1 CM021576.2 99.77 True indel: indel (> 5bp) 68851049 68852630 58046319 58047900 NC_060933.1 CM021576.2 99.75 True indel: indel (> 5bp) 68852879 68853512 58048159 58048792 NC_060933.1 CM021576.2 100.0 True local misassembly 68856101 68857806 58048793 58050498 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 68857975 68858919 58050687 58051631 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 68859330 68863298 58052042 58056010 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 68863304 68865198 58056011 58057905 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 68865199 68865724 58057911 58058436 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68865725 68868187 58058442 58060904 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 68868250 68869405 58060987 58062142 NC_060933.1 CM021576.2 99.74 True indel: indel (> 5bp) 68869416 68870044 58062143 58062771 NC_060933.1 CM021576.2 99.84 True local misassembly 68870736 68871519 58063468 58064251 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68871520 68872130 58064257 58064867 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68872136 68872904 58064868 58065636 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 68872905 68873879 58065642 58066616 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68874115 68874884 58066847 58067616 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68875260 68875773 58068002 58068515 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68875841 68876823 58068568 58069550 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68877227 68877788 58069939 58070500 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68877794 68878339 58070501 58071046 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68878345 68879768 58071047 58072470 NC_060933.1 CM021576.2 99.93 True indel: stretch of mismatches 68879994 68881522 58072696 58074224 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 68881528 68882337 58074225 58075034 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 68882498 68883672 58075185 58076359 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68883673 68884597 58076370 58077294 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68884603 68885811 58077295 58078503 NC_060933.1 CM021576.2 99.75 True indel: indel (> 5bp) 68885967 68887097 58078674 58079804 NC_060933.1 CM021576.2 99.91 True local misassembly 68887887 68889300 58080589 58082002 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68889306 68890969 58082003 58083666 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68890975 68891486 58083667 58084178 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68891532 68894446 58084179 58087093 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 68894457 68896298 58087094 58088935 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 68896304 68898466 58088936 58091098 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 68898467 68899594 58091104 58092231 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68899600 68901025 58092232 58093657 NC_060933.1 CM021576.2 99.93 True indel: stretch of mismatches 68901261 68904739 58093893 58097371 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 68904820 68905904 58097442 58098526 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 68906018 68906811 58098650 58099443 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68906822 68907708 58099444 58100330 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68907709 68908269 58100336 58100896 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 68908664 68910272 58101276 58102884 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 68910278 68911381 58102885 58103988 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 68911382 68912173 58103994 58104785 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 68912393 68913992 58105015 58106614 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68913993 68914879 58106620 58107506 NC_060933.1 CM021576.2 99.77 True indel: indel (> 5bp) 68915160 68917338 58107802 58109980 NC_060933.1 CM021576.2 99.86 True local misassembly 68917954 68918743 58110586 58111375 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 68918744 68920575 58111381 58113212 NC_060933.1 CM021576.2 99.89 True local misassembly 68920576 68922309 58113982 58115715 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 68922365 68922901 58115716 58116252 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68922902 68923460 58116254 58116812 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 68923461 68924454 58116818 58117811 NC_060933.1 CM021576.2 99.9 True indel: indel (> 5bp) 68924841 68925723 58118188 58119070 NC_060933.1 CM021576.2 99.66 True indel: stretch of mismatches 68926008 68927929 58119355 58121276 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 68927930 68928580 58121282 58121932 NC_060933.1 CM021576.2 99.85 True relocation, inconsistency = -10631469 58297112 58317270 58121933 58142146 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = 10636477 68953748 68960341 58142147 58148670 NC_060933.1 CM021576.2 98.7 True local misassembly 68956407 68960732 58148713 58153038 NC_060933.1 CM021576.2 99.39 True local misassembly 68959296 68971244 58153039 58165007 NC_060933.1 CM021576.2 99.23 True relocation, inconsistency = -7817 68963428 68993086 58165008 58194646 NC_060933.1 CM021576.2 99.19 True local misassembly 68994106 69011224 58194647 58211685 NC_060933.1 CM021576.2 99.16 True relocation, inconsistency = 15303686 53689007 53690419 58213099 58211686 NC_060933.1 CM021576.2 95.1 True relocation, inconsistency = 4689011 58379902 58381078 58213571 58214762 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = 10633253 69017435 69026033 58217866 58226519 NC_060933.1 CM021576.2 98.65 True relocation, inconsistency = -7480 69026049 69027999 58234015 58235971 NC_060933.1 CM021576.2 98.91 True relocation, inconsistency = -10629756 58398244 58402256 58235972 58239874 NC_060933.1 CM021576.2 97.89 True local misassembly 58405965 58417666 58239875 58251571 NC_060933.1 CM021576.2 98.97 True relocation, inconsistency = 10637440 69055107 69093377 58251572 58289752 NC_060933.1 CM021576.2 98.95 True relocation, inconsistency = -10627108 58467230 58467797 58290713 58291280 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 58467799 58468570 58291281 58292052 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = 10628208 69097579 69122376 58292853 58317655 NC_060933.1 CM021576.2 99.17 True local misassembly 69115802 69130998 58317690 58332866 NC_060933.1 CM021576.2 98.83 True relocation, inconsistency = 25642 69156709 69157926 58332935 58334157 NC_060933.1 CM021576.2 99.11 True relocation, inconsistency = -10636712 58521215 58549905 58334158 58362827 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = 10645900 69195806 69200398 58362828 58367440 NC_060933.1 CM021576.2 98.56 True local misassembly 69195241 69201367 58367441 58373577 NC_060933.1 CM021576.2 98.93 True local misassembly 69202825 69205749 58373578 58376512 NC_060933.1 CM021576.2 99.43 True relocation, inconsistency = 13700 69219450 69220837 58376513 58377920 NC_060933.1 CM021576.2 98.27 True local misassembly 69219297 69270286 58378012 58428895 NC_060933.1 CM021576.2 98.3 True local misassembly 69270317 69310283 58429040 58468607 NC_060933.1 CM021576.2 98.04 True relocation, inconsistency = -10624849 58686841 58718452 58470014 58501560 NC_060933.1 CM021576.2 99.51 True local misassembly 58718699 58720286 58501707 58503274 NC_060933.1 CM021576.2 95.47 True local misassembly 58728917 58812163 58511716 58594770 NC_060933.1 CM021576.2 99.16 True local misassembly 58814471 58820558 58597070 58603122 NC_060933.1 CM021576.2 98.98 True indel: indel (> 5bp) 58820869 58828004 58603492 58610607 NC_060933.1 CM021576.2 99.33 True local misassembly 58829086 58861127 58611795 58643811 NC_060933.1 CM021576.2 99.54 True local misassembly 58861759 58887034 58644356 58669660 NC_060933.1 CM021576.2 98.99 True relocation, inconsistency = 4334023 63221356 63222098 58669959 58670701 NC_060933.1 CM021576.2 99.06 True relocation, inconsistency = 5493713 57723810 57724342 58674534 58674002 NC_060933.1 CM021576.2 99.06 True local misassembly 57721434 57722405 58676805 58675834 NC_060933.1 CM021576.2 99.18 True indel: indel (> 5bp) 57720750 57721328 58677504 58676926 NC_060933.1 CM021576.2 99.31 True indel: indel (<= 5bp) 57719799 57720749 58678460 58677510 NC_060933.1 CM021576.2 99.58 True indel: indel (> 5bp) 57719278 57719788 58678971 58678461 NC_060933.1 CM021576.2 99.61 True local misassembly 57716728 57718612 58681241 58679357 NC_060933.1 CM021576.2 99.63 True relocation, inconsistency = 11772243 69491814 69503916 58682200 58694216 NC_060933.1 CM021576.2 97.78 True relocation, inconsistency = -15561795 53942435 53952320 58694530 58704297 NC_060933.1 CM021576.2 97.19 True local misassembly 53950980 53951533 58704324 58704877 NC_060933.1 CM021576.2 98.92 True relocation, inconsistency = 8819119 62770653 62780109 58704878 58714103 NC_060933.1 CM021576.2 95.84 True fake: not a misassembly (possible transposable element) 69515527 69516912 58714104 58715494 NC_060933.1 CM021576.2 98.86 True fake: not a misassembly (possible transposable element) 62780144 62798639 58715495 58733851 NC_060933.1 CM021576.2 95.2 True relocation, inconsistency = -3873129 58925511 58971866 58733852 58780090 NC_060933.1 CM021576.2 97.44 True local misassembly 58970882 58971828 58780276 58781222 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 58972107 58974847 58781506 58784246 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 58975281 58975811 58784690 58785220 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 58975871 58976629 58785320 58786078 NC_060933.1 CM021576.2 99.47 True local misassembly 58977706 58978607 58787180 58788081 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 58978921 58980394 58788410 58789883 NC_060933.1 CM021576.2 99.8 True local misassembly 58982006 58982539 58791585 58792118 NC_060933.1 CM021576.2 99.44 True local misassembly 58984540 58986209 58792119 58793788 NC_060933.1 CM021576.2 99.8 True relocation, inconsistency = 13343 58999553 59017299 58793789 58811505 NC_060933.1 CM021576.2 98.95 True local misassembly 59016337 59037200 58812445 58833348 NC_060933.1 CM021576.2 99.02 True relocation, inconsistency = 7020 59044221 59046092 58833349 58835220 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = 312345 58731248 58731863 58835848 58835233 NC_060933.1 CM021576.2 99.68 True relocation, inconsistency = 10920410 69652275 69653287 58835850 58836867 NC_060933.1 CM021576.2 97.56 True relocation, inconsistency = -10595449 59057854 59059455 58836883 58838484 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = 10631439 69690895 69698156 58838485 58845801 NC_060933.1 CM021576.2 98.33 True local misassembly 69693497 69699127 58845802 58851442 NC_060933.1 CM021576.2 99.16 True relocation, inconsistency = 1814532 67864490 67878964 58865778 58851443 NC_060933.1 CM021576.2 97.4 True relocation, inconsistency = 13591382 54271722 54272892 58865994 58867164 NC_060933.1 CM021576.2 99.49 True local misassembly 54274062 54274626 58868134 58868698 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = 15428842 69703469 69711349 58876609 58868699 NC_060933.1 CM021576.2 99.46 True relocation, inconsistency = 5259804 74971154 74971899 58876610 58877355 NC_060933.1 CM021576.2 99.4 True relocation, inconsistency = -5263461 69711404 69715435 58880321 58884372 NC_060933.1 CM021576.2 99.46 True local misassembly 69717492 69719745 58884373 58886631 NC_060933.1 CM021576.2 99.74 True relocation, inconsistency = -10628163 59091583 59093749 58886632 58888788 NC_060933.1 CM021576.2 96.62 True relocation, inconsistency = 10683239 69776989 69784619 58888789 58896408 NC_060933.1 CM021576.2 98.54 True relocation, inconsistency = -59841 69724779 69728163 58896409 58899798 NC_060933.1 CM021576.2 99.03 True relocation, inconsistency = -10632799 59095795 59139383 58900229 58943847 NC_060933.1 CM021576.2 98.16 True relocation, inconsistency = 3947001 63086385 63087807 58943848 58945260 NC_060933.1 CM021576.2 97.29 True relocation, inconsistency = 6680499 69768307 69782855 58945261 58959744 NC_060933.1 CM021576.2 99.03 True relocation, inconsistency = -10610320 59172536 59228876 58959745 59016100 NC_060933.1 CM021576.2 99.14 True relocation, inconsistency = 9180693 68413828 68424393 59026586 59016101 NC_060933.1 CM021576.2 96.93 True relocation, inconsistency = 1438081 69862475 69881034 59026587 59045141 NC_060933.1 CM021576.2 99.32 True relocation, inconsistency = 15045 69896080 69902470 59045142 59051577 NC_060933.1 CM021576.2 98.65 True relocation, inconsistency = -10495995 59409559 59410282 59054661 59055384 NC_060933.1 CM021576.2 98.34 True relocation, inconsistency = -137231 59273622 59303099 59055955 59085637 NC_060933.1 CM021576.2 98.5 True relocation, inconsistency = -19603 59283497 59291336 59085638 59093417 NC_060933.1 CM021576.2 97.65 True relocation, inconsistency = 14542 59305879 59333592 59093418 59121388 NC_060933.1 CM021576.2 98.15 True relocation, inconsistency = 10626375 69959968 70055893 59121389 59214328 NC_060933.1 CM021576.2 95.92 True relocation, inconsistency = -10628402 59427494 59438416 59214331 59225116 NC_060933.1 CM021576.2 97.25 True relocation, inconsistency = 10625067 70063484 70097104 59225117 59258716 NC_060933.1 CM021576.2 98.72 True relocation, inconsistency = -81337 70015768 70056013 59258717 59298927 NC_060933.1 CM021576.2 98.94 True local misassembly 70058134 70137427 59301087 59380380 NC_060933.1 CM021576.2 99.85 True local misassembly 70138371 70139494 59380977 59382160 NC_060933.1 CM021576.2 95.45 True local misassembly 70137638 70139594 59382161 59384118 NC_060933.1 CM021576.2 99.54 True local misassembly 70138396 70139494 59384119 59385257 NC_060933.1 CM021576.2 96.3 True local misassembly 70137638 70141818 59385258 59389394 NC_060933.1 CM021576.2 97.1 True local misassembly 70146628 70196245 59389395 59438952 NC_060933.1 CM021576.2 98.88 True relocation, inconsistency = -713175 69484878 69486073 59440760 59441925 NC_060933.1 CM021576.2 95.5 True relocation, inconsistency = -9915415 59573419 59681426 59444686 59552693 NC_060933.1 CM021576.2 99.72 True relocation, inconsistency = 1599433 61280860 61284898 59552694 59556709 NC_060933.1 CM021576.2 97.44 True relocation, inconsistency = 13587594 74872493 74873074 59556710 59557291 NC_060933.1 CM021576.2 97.02 True local misassembly 74873849 74874378 59558051 59558580 NC_060933.1 CM021576.2 98.87 True relocation, inconsistency = -15186881 59688320 59699923 59559403 59571066 NC_060933.1 CM021576.2 96.81 True indel: indel (> 5bp) 59700314 59703534 59571472 59574682 NC_060933.1 CM021576.2 99.16 True local misassembly 59704034 59725601 59575217 59596784 NC_060933.1 CM021576.2 99.39 True relocation, inconsistency = 10626743 70352381 70362511 59596821 59606951 NC_060933.1 CM021576.2 99.2 True relocation, inconsistency = 18138 70381260 70382515 59607562 59608852 NC_060933.1 CM021576.2 96.09 True relocation, inconsistency = 18909 70401425 70417285 59608853 59624779 NC_060933.1 CM021576.2 98.96 True relocation, inconsistency = -10742705 59674730 59691605 59624929 59641839 NC_060933.1 CM021576.2 98.97 True relocation, inconsistency = 14742861 74434467 74444557 59641840 59651940 NC_060933.1 CM021576.2 95.43 True relocation, inconsistency = -14741462 59704034 59725601 59652879 59674446 NC_060933.1 CM021576.2 99.33 True local misassembly 59722045 59732175 59674483 59684598 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = 18138 59750924 59752179 59685209 59686489 NC_060933.1 CM021576.2 96.5 True relocation, inconsistency = 10649245 70401425 70417285 59686490 59702401 NC_060933.1 CM021576.2 99.05 True relocation, inconsistency = -10613340 59803946 59806323 59702402 59704779 NC_060933.1 CM021576.2 99.34 True relocation, inconsistency = 7227 59813551 59955320 59704780 59846509 NC_060933.1 CM021576.2 99.69 True indel: stretch of mismatches 59955426 59966011 59846615 59857185 NC_060933.1 CM021576.2 99.07 True indel: indel (> 5bp) 59966174 59967888 59857327 59859040 NC_060933.1 CM021576.2 99.88 True local misassembly 59969613 59988491 59860753 59879535 NC_060933.1 CM021576.2 98.73 True local misassembly 59998079 60018264 59888843 59908933 NC_060933.1 CM021576.2 98.69 True local misassembly 60019071 60043568 59909700 59934203 NC_060933.1 CM021576.2 99.18 True local misassembly 60047018 60066696 59937646 59957314 NC_060933.1 CM021576.2 99.87 True local misassembly 60068511 60102346 59959045 59992940 NC_060933.1 CM021576.2 99.11 True relocation, inconsistency = 10625022 70727435 70741101 59993007 60006714 NC_060933.1 CM021576.2 98.75 True relocation, inconsistency = 1394187 72135290 72136297 60006716 60007723 NC_060933.1 CM021576.2 99.5 True indel: indel (<= 5bp) 72136303 72137000 60007724 60008421 NC_060933.1 CM021576.2 99.71 True indel: indel (> 5bp) 72137001 72138055 60008432 60009486 NC_060933.1 CM021576.2 99.43 True local misassembly 72139593 72140195 60011040 60011642 NC_060933.1 CM021576.2 100.0 True local misassembly 72140652 72141451 60012159 60012958 NC_060933.1 CM021576.2 99.0 True local misassembly 72141832 72143635 60013075 60014878 NC_060933.1 CM021576.2 99.61 True indel: indel (<= 5bp) 72143636 72144658 60014884 60015906 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 72144965 72145634 60016218 60016887 NC_060933.1 CM021576.2 99.85 True indel: indel (> 5bp) 72145635 72146222 60016937 60017524 NC_060933.1 CM021576.2 99.83 True local misassembly 72148323 72149380 60019225 60020282 NC_060933.1 CM021576.2 99.72 True indel: indel (> 5bp) 72149614 72150802 60020526 60021714 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 72150808 72151390 60021715 60022297 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 72151396 72152209 60022298 60023111 NC_060933.1 CM021576.2 99.88 True local misassembly 72152956 72153541 60023803 60024388 NC_060933.1 CM021576.2 99.32 True indel: indel (> 5bp) 72153552 72154165 60024389 60025002 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = -11998065 60156818 60180936 60025720 60050140 NC_060933.1 CM021576.2 98.35 True relocation, inconsistency = 12485406 72666343 72683537 60050141 60067380 NC_060933.1 CM021576.2 98.88 True relocation, inconsistency = -12484394 60199144 60199715 60067381 60067952 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 60199721 60200649 60067953 60068881 NC_060933.1 CM021576.2 100.0 True local misassembly 60201361 60203550 60069588 60071777 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 60203551 60204194 60071783 60072426 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 60204513 60205558 60072730 60073775 NC_060933.1 CM021576.2 99.52 True indel: indel (> 5bp) 60205884 60207782 60074086 60075984 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 60207788 60208745 60075985 60076942 NC_060933.1 CM021576.2 99.69 True indel: stretch of mismatches 60208882 60209480 60077079 60077677 NC_060933.1 CM021576.2 99.5 True indel: indel (<= 5bp) 60209481 60210282 60077683 60078484 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 60210507 60211149 60078699 60079341 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 60211150 60211837 60079347 60080034 NC_060933.1 CM021576.2 99.85 True local misassembly 60212472 60213023 60080679 60081230 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 60213029 60214719 60081231 60082921 NC_060933.1 CM021576.2 100.0 True local misassembly 60215070 60215704 60082922 60083556 NC_060933.1 CM021576.2 99.84 True local misassembly 60215804 60217351 60086822 60088369 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 60217412 60220279 60088370 60091237 NC_060933.1 CM021576.2 99.72 True indel: indel (<= 5bp) 60220285 60223033 60091238 60093986 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 60223034 60224785 60093992 60095743 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 60224791 60225549 60095744 60096502 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 60226014 60227690 60096952 60098628 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 60227696 60228764 60098629 60099697 NC_060933.1 CM021576.2 100.0 True local misassembly 60228899 60230107 60100332 60101540 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 12513830 72744338 72751981 60109569 60101921 NC_060933.1 CM021576.2 97.27 True relocation, inconsistency = 12471248 60223683 60273089 60109570 60159156 NC_060933.1 CM021576.2 96.97 True relocation, inconsistency = 12421505 72696721 72698456 60160897 60159157 NC_060933.1 CM021576.2 97.12 True fake: not a misassembly (possible transposable element) 70925587 70930198 60160898 60165499 NC_060933.1 CM021576.2 99.26 True fake: not a misassembly (possible transposable element) 72689718 72694429 60170211 60165500 NC_060933.1 CM021576.2 98.75 True relocation, inconsistency = 1740792 70930815 70948925 60170212 60188357 NC_060933.1 CM021576.2 98.63 True relocation, inconsistency = 1729583 72678509 72679511 60189360 60188358 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = 1688950 70965867 70986943 60191976 60213862 NC_060933.1 CM021576.2 95.16 True relocation, inconsistency = 1097984 72084928 72086025 60214960 60213863 NC_060933.1 CM021576.2 99.64 True local misassembly 72082859 72083831 60216954 60215982 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = 1087037 70990945 70995165 60217139 60221339 NC_060933.1 CM021576.2 99.21 True relocation, inconsistency = 25737 71020903 71033515 60221340 60233952 NC_060933.1 CM021576.2 99.08 True indel: indel (> 5bp) 71033616 71115483 60234017 60315714 NC_060933.1 CM021576.2 98.78 True relocation, inconsistency = -10652168 60468234 60477812 60320633 60330201 NC_060933.1 CM021576.2 98.81 True local misassembly 60479263 60497448 60331545 60349600 NC_060933.1 CM021576.2 98.84 True relocation, inconsistency = 12089276 72586725 72589372 60352177 60349601 NC_060933.1 CM021576.2 96.33 True local misassembly 72585734 72586385 60353276 60352635 NC_060933.1 CM021576.2 96.93 True local misassembly 72581166 72584794 60357010 60353373 NC_060933.1 CM021576.2 97.13 True relocation, inconsistency = 1359752 71163120 71219216 60359208 60415271 NC_060933.1 CM021576.2 99.29 True relocation, inconsistency = -10655989 60571900 60594058 60423944 60445786 NC_060933.1 CM021576.2 96.99 True local misassembly 60598969 60612675 60450434 60463991 NC_060933.1 CM021576.2 97.86 True local misassembly 60613469 60614075 60464787 60465393 NC_060933.1 CM021576.2 97.03 True local misassembly 60617203 60627282 60468363 60478427 NC_060933.1 CM021576.2 99.08 True local misassembly 60629037 60683484 60479976 60534488 NC_060933.1 CM021576.2 98.97 True relocation, inconsistency = 11730823 72414308 72416139 60536193 60534489 NC_060933.1 CM021576.2 95.61 True local misassembly 72413281 72414057 60537370 60536594 NC_060933.1 CM021576.2 98.97 True relocation, inconsistency = 11723801 60686872 60688943 60537907 60539996 NC_060933.1 CM021576.2 96.11 True local misassembly 60690493 60709634 60541522 60560551 NC_060933.1 CM021576.2 98.28 True local misassembly 60710810 60743118 60561720 60593883 NC_060933.1 CM021576.2 99.13 True local misassembly 60743576 60753403 60594395 60604292 NC_060933.1 CM021576.2 98.97 True local misassembly 60755332 60768812 60606101 60619601 NC_060933.1 CM021576.2 99.7 True indel: indel (> 5bp) 60769093 60778134 60619872 60628883 NC_060933.1 CM021576.2 98.13 True local misassembly 60778985 60800890 60629723 60651563 NC_060933.1 CM021576.2 98.44 True local misassembly 60804129 60861077 60654689 60711622 NC_060933.1 CM021576.2 99.74 True fake: not a misassembly (possible transposable element) 51688214 51690194 60711850 60713829 NC_060933.1 CM021576.2 98.9 True fake: not a misassembly (possible transposable element) 60863186 60878805 60713830 60729367 NC_060933.1 CM021576.2 98.59 True local misassembly 60880312 60889647 60730713 60740013 NC_060933.1 CM021576.2 99.15 True local misassembly 60893043 60894494 60740341 60741828 NC_060933.1 CM021576.2 95.46 True relocation, inconsistency = -8708763 52187312 52187992 60743409 60744089 NC_060933.1 CM021576.2 99.85 True local misassembly 52188476 52190060 60744696 60746260 NC_060933.1 CM021576.2 97.48 True relocation, inconsistency = 8705979 60901769 60913646 60751990 60763877 NC_060933.1 CM021576.2 98.81 True relocation, inconsistency = -9715480 51198167 51199848 60763878 60765539 NC_060933.1 CM021576.2 98.21 True relocation, inconsistency = 6533274 57737912 57740836 60773218 60770329 NC_060933.1 CM021576.2 97.14 True relocation, inconsistency = 3182259 60924048 60934656 60774171 60784720 NC_060933.1 CM021576.2 98.96 True local misassembly 60935875 60937711 60785928 60787744 NC_060933.1 CM021576.2 96.41 True local misassembly 60938351 60961199 60788438 60811322 NC_060933.1 CM021576.2 99.38 True local misassembly 60964565 61001980 60814503 60851945 NC_060933.1 CM021576.2 98.31 True indel: indel (> 5bp) 61002384 61014728 60852323 60864681 NC_060933.1 CM021576.2 99.72 True local misassembly 61017505 61057857 60867432 60907788 NC_060933.1 CM021576.2 99.75 True indel: indel (<= 5bp) 61058086 61059067 60908021 60908997 NC_060933.1 CM021576.2 98.17 True indel: indel (> 5bp) 61059307 61062702 60909247 60912652 NC_060933.1 CM021576.2 99.3 True local misassembly 61062791 61147943 60912876 60997788 NC_060933.1 CM021576.2 98.81 True local misassembly 61148564 61151137 60998437 61001010 NC_060933.1 CM021576.2 99.23 True indel: indel (> 5bp) 61151377 61256440 61001240 61106318 NC_060933.1 CM021576.2 99.12 True relocation, inconsistency = -8737946 52521065 52521655 61108889 61109464 NC_060933.1 CM021576.2 95.94 True local misassembly 52519728 52522200 61109884 61112311 NC_060933.1 CM021576.2 96.62 True local misassembly 52523218 52563126 61112325 61152148 NC_060933.1 CM021576.2 97.78 True local misassembly 52567093 52587116 61155910 61175888 NC_060933.1 CM021576.2 99.65 True indel: indel (<= 5bp) 52587208 52617810 61175985 61206563 NC_060933.1 CM021576.2 99.68 True relocation, inconsistency = 20924125 73541949 73548098 61212741 61206577 NC_060933.1 CM021576.2 98.32 True relocation, inconsistency = 12167210 61363481 61374625 61212855 61223953 NC_060933.1 CM021576.2 98.72 True local misassembly 61375935 61440828 61225281 61289871 NC_060933.1 CM021576.2 98.64 True local misassembly 61445473 61453522 61294437 61302461 NC_060933.1 CM021576.2 98.71 True indel: indel (> 5bp) 61453684 61465134 61302643 61314113 NC_060933.1 CM021576.2 99.1 True local misassembly 61467400 61538270 61316405 61386936 NC_060933.1 CM021576.2 98.87 True local misassembly 61544088 61579945 61392493 61427963 NC_060933.1 CM021576.2 97.1 True relocation, inconsistency = -8731945 52848904 52852553 61428867 61432531 NC_060933.1 CM021576.2 96.65 True relocation, inconsistency = 1045602 53898849 53899606 61433225 61433982 NC_060933.1 CM021576.2 99.74 True local misassembly 53899882 53900708 61434368 61435194 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = 7686562 61587905 61606237 61435829 61454161 NC_060933.1 CM021576.2 99.54 True local misassembly 61609052 61622676 61456995 61470604 NC_060933.1 CM021576.2 99.11 True local misassembly 61624891 61626446 61472830 61474385 NC_060933.1 CM021576.2 97.94 True local misassembly 61627838 61694682 61475775 61542571 NC_060933.1 CM021576.2 99.44 True local misassembly 61695579 61696262 61543350 61544038 NC_060933.1 CM021576.2 98.11 True indel: indel (> 5bp) 61696774 61789362 61544479 61636737 NC_060933.1 CM021576.2 98.97 True local misassembly 61790225 61805863 61637622 61653251 NC_060933.1 CM021576.2 99.27 True local misassembly 61808200 61823616 61655537 61671017 NC_060933.1 CM021576.2 98.77 True local misassembly 61824235 61825302 61671497 61672554 NC_060933.1 CM021576.2 95.71 True local misassembly 61825952 61831183 61673265 61678497 NC_060933.1 CM021576.2 98.26 True local misassembly 61832337 61848631 61679650 61695902 NC_060933.1 CM021576.2 99.19 True local misassembly 61851014 61884947 61698130 61731988 NC_060933.1 CM021576.2 99.16 True local misassembly 61887400 61887901 61734348 61734849 NC_060933.1 CM021576.2 98.61 True indel: indel (> 5bp) 61888056 61888835 61734949 61735728 NC_060933.1 CM021576.2 98.33 True local misassembly 61893064 61895369 61739913 61742258 NC_060933.1 CM021576.2 95.89 True local misassembly 61896052 61932887 61742926 61779802 NC_060933.1 CM021576.2 98.89 True indel: indel (<= 5bp) 61933039 61946894 61779949 61793712 NC_060933.1 CM021576.2 98.75 True local misassembly 61948553 61982508 61795317 61829214 NC_060933.1 CM021576.2 98.46 True fake: not a misassembly (possible transposable element) 61997439 61998235 61829816 61830607 NC_060933.1 CM021576.2 96.53 True fake: not a misassembly (possible transposable element) 61986742 61992428 61833401 61839053 NC_060933.1 CM021576.2 96.95 True local misassembly 61993513 62019419 61840138 61866024 NC_060933.1 CM021576.2 99.06 True local misassembly 62020011 62036627 61866647 61883132 NC_060933.1 CM021576.2 98.01 True local misassembly 62037645 62142799 61884150 61989344 NC_060933.1 CM021576.2 99.18 True local misassembly 62143619 62219379 61990130 62065687 NC_060933.1 CM021576.2 98.62 True local misassembly 62220390 62222396 62065688 62067644 NC_060933.1 CM021576.2 96.18 True local misassembly 62223252 62229280 62069398 62075416 NC_060933.1 CM021576.2 98.81 True local misassembly 62236276 62239230 62075866 62078825 NC_060933.1 CM021576.2 98.32 True relocation, inconsistency = -8751000 53488231 53509927 62078826 62100457 NC_060933.1 CM021576.2 99.19 True local misassembly 53510506 53513451 62100458 62103408 NC_060933.1 CM021576.2 99.33 True local misassembly 53515045 53515591 62104814 62105360 NC_060933.1 CM021576.2 99.82 True relocation, inconsistency = 8744238 62260918 62301092 62106449 62146563 NC_060933.1 CM021576.2 99.11 True local misassembly 62302701 62303893 62148150 62149347 NC_060933.1 CM021576.2 98.25 True local misassembly 62306601 62308570 62152249 62154223 NC_060933.1 CM021576.2 97.54 True local misassembly 62313148 62315453 62158991 62161276 NC_060933.1 CM021576.2 95.73 True indel: indel (> 5bp) 62315592 62329524 62161426 62175329 NC_060933.1 CM021576.2 98.87 True local misassembly 62333287 62335476 62179113 62181306 NC_060933.1 CM021576.2 99.09 True local misassembly 62336304 62378371 62182130 62223787 NC_060933.1 CM021576.2 97.89 True local misassembly 62379692 62399857 62225051 62245196 NC_060933.1 CM021576.2 99.59 True local misassembly 62407453 62419994 62252374 62264595 NC_060933.1 CM021576.2 96.13 True fake: not a misassembly (possible transposable element) 74318148 74318742 62265972 62265368 NC_060933.1 CM021576.2 98.35 True fake: not a misassembly (possible transposable element) 62422757 62423424 62267131 62267798 NC_060933.1 CM021576.2 96.86 True relocation, inconsistency = 11883982 74307626 74316071 62276369 62268018 NC_060933.1 CM021576.2 96.7 True relocation, inconsistency = 11831238 62435996 62472430 62280327 62316722 NC_060933.1 CM021576.2 99.63 True local misassembly 62473171 62473932 62317495 62318251 NC_060933.1 CM021576.2 97.11 True local misassembly 62477299 62481945 62321519 62326188 NC_060933.1 CM021576.2 98.67 True local misassembly 62483828 62484699 62327905 62328776 NC_060933.1 CM021576.2 99.08 True local misassembly 62485532 62486129 62329779 62330376 NC_060933.1 CM021576.2 99.5 True local misassembly 62486736 62488223 62330788 62332275 NC_060933.1 CM021576.2 98.86 True local misassembly 62488890 62489590 62332957 62333657 NC_060933.1 CM021576.2 99.29 True indel: indel (<= 5bp) 62489591 62490526 62333663 62334598 NC_060933.1 CM021576.2 99.47 True local misassembly 62491635 62492332 62335677 62336374 NC_060933.1 CM021576.2 99.71 True relocation, inconsistency = 9321938 53165859 53168895 62340173 62337176 NC_060933.1 CM021576.2 96.05 True relocation, inconsistency = 571079 53741350 53743164 62341549 62343368 NC_060933.1 CM021576.2 96.7 True local misassembly 53744944 53750108 62344986 62350180 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = 8756315 62508754 62512334 62352511 62356127 NC_060933.1 CM021576.2 97.52 True fake: not a misassembly (possible transposable element) 53806644 53807373 62358218 62358947 NC_060933.1 CM021576.2 98.22 True fake: not a misassembly (possible transposable element) 62515526 62522873 62359202 62366503 NC_060933.1 CM021576.2 96.16 True fake: not a misassembly (possible transposable element) 71414899 71416389 62367878 62369387 NC_060933.1 CM021576.2 97.43 True fake: not a misassembly (possible transposable element) 62528069 62534054 62371522 62377507 NC_060933.1 CM021576.2 99.97 True local misassembly 62536381 62537743 62379775 62381116 NC_060933.1 CM021576.2 95.38 True local misassembly 62540595 62544709 62384082 62388220 NC_060933.1 CM021576.2 96.03 True local misassembly 62545311 62549328 62388773 62392810 NC_060933.1 CM021576.2 98.96 True local misassembly 62550715 62554027 62394347 62397589 NC_060933.1 CM021576.2 97.43 True local misassembly 62555446 62600100 62398944 62443593 NC_060933.1 CM021576.2 99.84 True local misassembly 62600846 62601830 62444390 62445374 NC_060933.1 CM021576.2 97.77 True local misassembly 62603593 62619401 62447180 62462969 NC_060933.1 CM021576.2 99.21 True relocation, inconsistency = 12713885 75334084 75334743 62464426 62463767 NC_060933.1 CM021576.2 99.39 True local misassembly 75334132 75335048 62466070 62465174 NC_060933.1 CM021576.2 97.27 True local misassembly 75324627 75330576 62472164 62466071 NC_060933.1 CM021576.2 96.68 True relocation, inconsistency = 12689357 62629005 62634898 62472536 62478443 NC_060933.1 CM021576.2 95.7 True local misassembly 62636341 62651998 62479848 62495590 NC_060933.1 CM021576.2 97.95 True local misassembly 62650135 62651075 62496218 62497158 NC_060933.1 CM021576.2 99.15 True local misassembly 62653640 62654417 62497159 62497941 NC_060933.1 CM021576.2 98.02 True relocation, inconsistency = -8771453 53889604 53909241 62504581 62524162 NC_060933.1 CM021576.2 98.95 True local misassembly 53914359 53916473 62527020 62529094 NC_060933.1 CM021576.2 95.81 True relocation, inconsistency = 8769639 62686215 62714208 62529197 62557155 NC_060933.1 CM021576.2 99.52 True local misassembly 62716010 62729831 62559008 62572755 NC_060933.1 CM021576.2 97.56 True local misassembly 62730614 62743917 62573543 62586866 NC_060933.1 CM021576.2 99.51 True fake: not a misassembly (possible transposable element) 57607661 57608263 62589767 62589165 NC_060933.1 CM021576.2 99.83 True fake: not a misassembly (possible transposable element) 62748494 62808628 62591485 62651479 NC_060933.1 CM021576.2 99.08 True indel: indel (<= 5bp) 62808771 62890070 62651617 62732951 NC_060933.1 CM021576.2 99.77 True relocation, inconsistency = 2566345 60240265 60240797 62735112 62734580 NC_060933.1 CM021576.2 99.06 True relocation, inconsistency = 6103532 54133591 54135995 62735850 62738219 NC_060933.1 CM021576.2 95.79 True local misassembly 54136728 54144469 62738832 62746485 NC_060933.1 CM021576.2 96.49 True relocation, inconsistency = 8759431 62908018 62908693 62750603 62751278 NC_060933.1 CM021576.2 98.08 True local misassembly 62909476 62917994 62752053 62760516 NC_060933.1 CM021576.2 99.08 True relocation, inconsistency = 6716843 69635206 69637596 62760885 62763300 NC_060933.1 CM021576.2 96.19 True relocation, inconsistency = -15519012 54118670 54119605 62763386 62764311 NC_060933.1 CM021576.2 99.13 True relocation, inconsistency = 8802000 62921606 62936734 62764312 62779321 NC_060933.1 CM021576.2 97.92 True local misassembly 62937307 63007543 62779832 62849969 NC_060933.1 CM021576.2 98.78 True local misassembly 63010662 63023793 62853122 62866253 NC_060933.1 CM021576.2 99.98 True local misassembly 63024793 63147428 62867278 62989907 NC_060933.1 CM021576.2 99.69 True relocation, inconsistency = -8799887 54358771 54359508 63001137 63001874 NC_060933.1 CM021576.2 98.24 True local misassembly 54361651 54362254 63004011 63004614 NC_060933.1 CM021576.2 97.85 True local misassembly 54374414 54375458 63016492 63017521 NC_060933.1 CM021576.2 96.1 True relocation, inconsistency = 9248905 63626724 63627341 63019882 63020489 NC_060933.1 CM021576.2 96.28 True relocation, inconsistency = -448952 63180598 63185754 63022698 63027880 NC_060933.1 CM021576.2 95.01 True indel: indel (> 5bp) 63186250 63219678 63028348 63061687 NC_060933.1 CM021576.2 99.33 True local misassembly 63221127 63226494 63063155 63068532 NC_060933.1 CM021576.2 97.31 True local misassembly 63227869 63248510 63069957 63090549 NC_060933.1 CM021576.2 99.41 True local misassembly 63248977 63249520 63092540 63093083 NC_060933.1 CM021576.2 98.71 True indel: indel (> 5bp) 63249666 63250209 63093159 63093702 NC_060933.1 CM021576.2 98.35 True local misassembly 63252627 63253439 63094772 63095584 NC_060933.1 CM021576.2 99.26 True indel: indel (<= 5bp) 63253445 63254016 63095585 63096156 NC_060933.1 CM021576.2 99.65 True local misassembly 63255311 63256099 63097395 63098183 NC_060933.1 CM021576.2 99.11 True local misassembly 63258232 63258815 63100111 63100694 NC_060933.1 CM021576.2 98.8 True indel: indel (<= 5bp) 63258816 63260743 63100700 63102627 NC_060933.1 CM021576.2 98.96 True local misassembly 63262646 63264108 63104530 63105992 NC_060933.1 CM021576.2 99.04 True local misassembly 63265831 63266682 63107702 63108553 NC_060933.1 CM021576.2 99.06 True local misassembly 63271210 63428245 63112753 63269800 NC_060933.1 CM021576.2 99.77 True indel: stretch of mismatches 63428246 63446087 63269801 63287602 NC_060933.1 CM021576.2 99.19 True local misassembly 63448991 63456104 63290474 63297782 NC_060933.1 CM021576.2 95.19 True relocation, inconsistency = 10654290 74111759 74113941 63299147 63301324 NC_060933.1 CM021576.2 95.41 True relocation, inconsistency = 8946672 65164140 65164779 63302271 63301632 NC_060933.1 CM021576.2 99.06 True relocation, inconsistency = 1624721 63465907 63534495 63307195 63375755 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = 1158184 62306601 62307668 63376857 63375810 NC_060933.1 CM021576.2 96.55 True local misassembly 62306046 62306619 63378051 63377483 NC_060933.1 CM021576.2 98.43 True relocation, inconsistency = 8748164 53556211 53557731 63379717 63378202 NC_060933.1 CM021576.2 97.9 True local misassembly 53558282 53559046 63380482 63379718 NC_060933.1 CM021576.2 97.53 True relocation, inconsistency = 9980220 63543493 63544100 63384709 63385316 NC_060933.1 CM021576.2 98.68 True fake: not a misassembly (possible transposable element) 68600242 68601363 63387007 63385886 NC_060933.1 CM021576.2 97.69 True fake: not a misassembly (possible transposable element) 63562512 63720859 63403067 63561310 NC_060933.1 CM021576.2 99.71 True relocation, inconsistency = -10158643 53562307 53563758 63561401 63562857 NC_060933.1 CM021576.2 95.28 True relocation, inconsistency = 18378143 71941902 71942622 63562858 63563573 NC_060933.1 CM021576.2 96.92 True relocation, inconsistency = -15746904 56196524 56197258 63564379 63565118 NC_060933.1 CM021576.2 97.05 True relocation, inconsistency = 15259629 71463351 71464723 63571582 63572994 NC_060933.1 CM021576.2 96.04 True relocation, inconsistency = -7732194 63733466 63791105 63573931 63631539 NC_060933.1 CM021576.2 99.81 True fake: not a misassembly (possible transposable element) 66085117 66086120 63632631 63633639 NC_060933.1 CM021576.2 98.22 True fake: not a misassembly (possible transposable element) 63796361 63796970 63635781 63636390 NC_060933.1 CM021576.2 98.03 True local misassembly 63799254 63799842 63639572 63640160 NC_060933.1 CM021576.2 99.66 True indel: indel (> 5bp) 63800112 63800695 63640410 63640993 NC_060933.1 CM021576.2 99.14 True fake: not a misassembly (possible transposable element) 67271968 67273982 63645467 63647481 NC_060933.1 CM021576.2 96.09 True fake: not a misassembly (possible transposable element) 63809980 63992177 63650382 63832499 NC_060933.1 CM021576.2 99.76 True relocation, inconsistency = 2856019 60952000 60953130 63834460 63833330 NC_060933.1 CM021576.2 99.2 True relocation, inconsistency = 6560056 54388762 54389352 63837642 63837052 NC_060933.1 CM021576.2 98.98 True indel: indel (> 5bp) 54388046 54388586 63838348 63837808 NC_060933.1 CM021576.2 99.26 True relocation, inconsistency = 9609878 64002844 64003488 63842728 63843367 NC_060933.1 CM021576.2 96.9 True local misassembly 64004423 64055943 63844282 63895787 NC_060933.1 CM021576.2 99.73 True indel: stretch of mismatches 64056424 64058360 63896268 63898204 NC_060933.1 CM021576.2 99.38 True local misassembly 64061548 64065248 63901377 63905091 NC_060933.1 CM021576.2 95.54 True local misassembly 64078410 64183790 63917952 64023397 NC_060933.1 CM021576.2 99.37 True relocation, inconsistency = 9397860 73582071 73590977 64032809 64023818 NC_060933.1 CM021576.2 97.65 True relocation, inconsistency = 9372181 64194017 64209079 64033620 64048667 NC_060933.1 CM021576.2 99.62 True local misassembly 64216518 64224914 64055981 64064393 NC_060933.1 CM021576.2 95.42 True local misassembly 64225544 64227057 64064977 64066534 NC_060933.1 CM021576.2 95.25 True local misassembly 64232195 64243515 64071490 64082746 NC_060933.1 CM021576.2 96.65 True relocation, inconsistency = 9294785 73538301 73542699 64082747 64087185 NC_060933.1 CM021576.2 96.95 True indel: indel (> 5bp) 73543119 73547660 64087591 64092112 NC_060933.1 CM021576.2 98.38 True relocation, inconsistency = -9294614 64255006 64324690 64094072 64163746 NC_060933.1 CM021576.2 99.69 True indel: indel (> 5bp) 64324758 64331219 64163824 64170284 NC_060933.1 CM021576.2 99.18 True fake: not a misassembly (possible transposable element) 64067070 64067674 64172729 64173338 NC_060933.1 CM021576.2 95.31 True fake: not a misassembly (possible transposable element) 64340237 64341154 64178684 64179601 NC_060933.1 CM021576.2 99.02 True indel: indel (> 5bp) 64341583 64342106 64180085 64180608 NC_060933.1 CM021576.2 98.66 True fake: not a misassembly (possible transposable element) 64069484 64070007 64187378 64187891 NC_060933.1 CM021576.2 95.42 True fake: not a misassembly (possible transposable element) 64351175 64464155 64189354 64302286 NC_060933.1 CM021576.2 99.65 True local misassembly 64465849 64468799 64303942 64306887 NC_060933.1 CM021576.2 95.59 True local misassembly 64469359 64537906 64307462 64375893 NC_060933.1 CM021576.2 99.37 True relocation, inconsistency = 6099948 70647396 70648090 64386129 64385435 NC_060933.1 CM021576.2 97.7 True local misassembly 70646110 70646789 64387375 64386696 NC_060933.1 CM021576.2 97.06 True local misassembly 70644697 70645371 64388763 64388089 NC_060933.1 CM021576.2 98.52 True indel: indel (<= 5bp) 70644162 70644691 64389293 64388764 NC_060933.1 CM021576.2 98.3 True relocation, inconsistency = 15403984 55237563 55240022 64391908 64389449 NC_060933.1 CM021576.2 97.02 True relocation, inconsistency = 9314278 64559671 64571242 64397279 64408835 NC_060933.1 CM021576.2 99.63 True indel: indel (<= 5bp) 64571404 64610538 64409002 64447840 NC_060933.1 CM021576.2 97.76 True local misassembly 64612157 64612691 64449389 64449923 NC_060933.1 CM021576.2 98.88 True local misassembly 64613507 64614437 64450709 64451639 NC_060933.1 CM021576.2 99.46 True local misassembly 64617202 64617926 64454234 64454958 NC_060933.1 CM021576.2 99.31 True indel: indel (> 5bp) 64617927 64618966 64454969 64456008 NC_060933.1 CM021576.2 98.85 True local misassembly 64620355 64621415 64457347 64458407 NC_060933.1 CM021576.2 98.77 True local misassembly 64626388 64627283 64463101 64463996 NC_060933.1 CM021576.2 99.33 True indel: indel (> 5bp) 64627449 64629584 64464196 64466317 NC_060933.1 CM021576.2 97.16 True local misassembly 64631035 64648853 64467569 64485415 NC_060933.1 CM021576.2 97.16 True local misassembly 64654246 64665077 64490465 64501309 NC_060933.1 CM021576.2 99.12 True relocation, inconsistency = 7969985 56675163 56679097 64510432 64506473 NC_060933.1 CM021576.2 95.32 True local misassembly 56677461 56679238 64515112 64513320 NC_060933.1 CM021576.2 97.33 True relocation, inconsistency = -7124074 63799853 63800695 64516794 64515952 NC_060933.1 CM021576.2 98.93 True indel: indel (> 5bp) 63799063 63799842 64517574 64516795 NC_060933.1 CM021576.2 98.42 True relocation, inconsistency = -3474930 67272736 67273992 64518836 64517575 NC_060933.1 CM021576.2 98.34 True relocation, inconsistency = 2576668 64683914 64694909 64519995 64531015 NC_060933.1 CM021576.2 97.79 True relocation, inconsistency = 9564052 74259460 74270942 64531514 64542795 NC_060933.1 CM021576.2 96.02 True relocation, inconsistency = -9564379 64707877 64712119 64544109 64548337 NC_060933.1 CM021576.2 98.89 True indel: indel (> 5bp) 64712395 64713774 64548598 64549977 NC_060933.1 CM021576.2 98.91 True indel: indel (<= 5bp) 64713780 64714303 64549978 64550501 NC_060933.1 CM021576.2 99.43 True local misassembly 64715518 64716140 64551506 64552128 NC_060933.1 CM021576.2 97.91 True local misassembly 64719485 64767905 64555437 64603807 NC_060933.1 CM021576.2 99.66 True indel: indel (<= 5bp) 64768170 64821367 64604076 64657233 NC_060933.1 CM021576.2 99.73 True indel: indel (> 5bp) 64821564 64902319 64657405 64738085 NC_060933.1 CM021576.2 98.65 True fake: not a misassembly (possible transposable element) 64069484 64070102 64745159 64745767 NC_060933.1 CM021576.2 96.61 True fake: not a misassembly (possible transposable element) 64910904 64973144 64746502 64808649 NC_060933.1 CM021576.2 99.57 True local misassembly 64975043 64976236 64810482 64811675 NC_060933.1 CM021576.2 98.24 True relocation, inconsistency = 11372465 53599664 53600925 64814579 64813328 NC_060933.1 CM021576.2 95.01 True relocation, inconsistency = 2041550 55643280 55643902 64815384 64816006 NC_060933.1 CM021576.2 98.88 True relocation, inconsistency = 5634442 61278455 61279366 64816117 64816998 NC_060933.1 CM021576.2 95.5 True relocation, inconsistency = 8430867 52846471 52846990 64818115 64817596 NC_060933.1 CM021576.2 98.65 True relocation, inconsistency = 12135649 64984865 65007551 64820341 64842887 NC_060933.1 CM021576.2 97.87 True local misassembly 65008122 65013882 64843393 64849198 NC_060933.1 CM021576.2 98.18 True indel: indel (> 5bp) 65014222 65034498 64849463 64869799 NC_060933.1 CM021576.2 98.77 True relocation, inconsistency = 10384910 75422710 75423491 64873101 64873892 NC_060933.1 CM021576.2 97.1 True relocation, inconsistency = 3019530 72393265 72394100 64883782 64882972 NC_060933.1 CM021576.2 96.53 True indel: indel (> 5bp) 72384148 72392977 64892811 64884002 NC_060933.1 CM021576.2 99.42 True relocation, inconsistency = 7292265 65069163 65081434 64903260 64915576 NC_060933.1 CM021576.2 98.47 True local misassembly 65088708 65112558 64922694 64946538 NC_060933.1 CM021576.2 99.64 True local misassembly 65117998 65123492 64951718 64957157 NC_060933.1 CM021576.2 96.73 True local misassembly 65130058 65146290 64963444 64979517 NC_060933.1 CM021576.2 97.05 True fake: not a misassembly (possible transposable element) 71392037 71395234 64981760 64984907 NC_060933.1 CM021576.2 96.58 True fake: not a misassembly (possible transposable element) 65156624 65165403 64989694 64998443 NC_060933.1 CM021576.2 98.31 True local misassembly 65166118 65168309 64999129 65001305 NC_060933.1 CM021576.2 96.49 True indel: indel (> 5bp) 65168558 65178001 65001519 65010967 NC_060933.1 CM021576.2 99.74 True relocation, inconsistency = 1205357 66383359 66383897 65011507 65010968 NC_060933.1 CM021576.2 98.58 True relocation, inconsistency = 5029274 71413764 71415078 65012100 65013414 NC_060933.1 CM021576.2 97.13 True relocation, inconsistency = 26943 71442061 71442991 65013454 65014363 NC_060933.1 CM021576.2 96.05 True relocation, inconsistency = -6261622 65182291 65183568 65015285 65016512 NC_060933.1 CM021576.2 95.23 True local misassembly 65184307 65184810 65016996 65017499 NC_060933.1 CM021576.2 97.22 True local misassembly 65185222 65185813 65018006 65018597 NC_060933.1 CM021576.2 98.82 True local misassembly 65188001 65193974 65020777 65026790 NC_060933.1 CM021576.2 96.8 True indel: indel (> 5bp) 65194381 65200939 65027215 65033763 NC_060933.1 CM021576.2 98.51 True local misassembly 65202362 65229638 65035127 65062403 NC_060933.1 CM021576.2 99.9 True local misassembly 65230432 65253651 65063028 65085907 NC_060933.1 CM021576.2 95.99 True fake: not a misassembly (possible transposable element) 72944263 72948636 65090271 65085908 NC_060933.1 CM021576.2 97.86 True fake: not a misassembly (possible transposable element) 65257902 65274735 65090272 65107150 NC_060933.1 CM021576.2 98.94 True local misassembly 65277247 65278018 65109583 65110354 NC_060933.1 CM021576.2 98.96 True indel: indel (> 5bp) 65278143 65295075 65110489 65127641 NC_060933.1 CM021576.2 95.88 True local misassembly 65300530 65349009 65132826 65181085 NC_060933.1 CM021576.2 97.73 True relocation, inconsistency = 15551727 49745573 49746087 65184315 65183801 NC_060933.1 CM021576.2 98.83 True local misassembly 49744157 49744834 65185752 65185075 NC_060933.1 CM021576.2 98.23 True relocation, inconsistency = -22458039 72199582 72201749 65188366 65186199 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 72198194 72199581 65189759 65188372 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72196247 72198193 65191716 65189770 NC_060933.1 CM021576.2 99.69 True indel: indel (<= 5bp) 72195247 72195771 65192711 65192187 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72194637 72195236 65193311 65192712 NC_060933.1 CM021576.2 99.5 True indel: indel (> 5bp) 72193927 72194636 65194031 65193322 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = 6826116 65350579 65367534 65194308 65211642 NC_060933.1 CM021576.2 96.0 True relocation, inconsistency = 16477 65384815 65390320 65212446 65217866 NC_060933.1 CM021576.2 96.52 True relocation, inconsistency = 6773347 72163668 72179161 65232902 65217867 NC_060933.1 CM021576.2 95.65 True relocation, inconsistency = 12023901 60134087 60138069 65238467 65234600 NC_060933.1 CM021576.2 95.33 True relocation, inconsistency = 5255794 65394948 65440442 65239552 65284957 NC_060933.1 CM021576.2 99.11 True fake: not a misassembly (possible transposable element) 71014708 71016978 65285722 65288073 NC_060933.1 CM021576.2 95.47 True fake: not a misassembly (possible transposable element) 65443619 65473315 65288074 65317788 NC_060933.1 CM021576.2 98.73 True local misassembly 65476706 65478296 65321109 65322694 NC_060933.1 CM021576.2 95.82 True fake: not a misassembly (possible transposable element) 71037607 71040165 65323147 65325729 NC_060933.1 CM021576.2 95.69 True fake: not a misassembly (possible transposable element) 65482470 65516686 65327141 65361167 NC_060933.1 CM021576.2 99.24 True local misassembly 65521435 65525224 65366031 65369774 NC_060933.1 CM021576.2 97.47 True local misassembly 65526532 65543325 65370972 65387731 NC_060933.1 CM021576.2 98.25 True local misassembly 65543846 65556099 65388241 65400479 NC_060933.1 CM021576.2 99.38 True relocation, inconsistency = -10575236 54988540 55002620 65408156 65422189 NC_060933.1 CM021576.2 98.46 True relocation, inconsistency = 16932499 71935789 71938052 65425092 65422859 NC_060933.1 CM021576.2 97.66 True fake: not a misassembly (possible transposable element) 65581424 65582938 65425441 65426974 NC_060933.1 CM021576.2 95.6 True fake: not a misassembly (possible transposable element) 71927746 71928922 65428753 65427592 NC_060933.1 CM021576.2 98.13 True relocation, inconsistency = 6335754 65585364 65591565 65429180 65435354 NC_060933.1 CM021576.2 97.8 True indel: stretch of mismatches 65591566 65592794 65435355 65436593 NC_060933.1 CM021576.2 95.94 True local misassembly 65594996 65596560 65438731 65440320 NC_060933.1 CM021576.2 97.67 True local misassembly 65599090 65720276 65442809 65563885 NC_060933.1 CM021576.2 99.73 True local misassembly 65720561 65721618 65564035 65565112 NC_060933.1 CM021576.2 95.18 True fake: not a misassembly (possible transposable element) 55149886 55151749 65565113 65566951 NC_060933.1 CM021576.2 98.12 True fake: not a misassembly (possible transposable element) 65724019 65730492 65567538 65574041 NC_060933.1 CM021576.2 98.97 True local misassembly 65737450 65738598 65580885 65582013 NC_060933.1 CM021576.2 96.0 True local misassembly 65741069 65766538 65584402 65609786 NC_060933.1 CM021576.2 98.87 True local misassembly 65767210 65795383 65610403 65638551 NC_060933.1 CM021576.2 98.68 True local misassembly 65797272 65801619 65640520 65644817 NC_060933.1 CM021576.2 98.07 True local misassembly 65803630 65815398 65646701 65658459 NC_060933.1 CM021576.2 98.4 True fake: not a misassembly (possible transposable element) 56427697 56430789 65658692 65661734 NC_060933.1 CM021576.2 95.6 True fake: not a misassembly (possible transposable element) 65819145 65830835 65662261 65673946 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = 1129872 66960708 66961597 65673947 65674846 NC_060933.1 CM021576.2 95.78 True relocation, inconsistency = 157404 67121671 67123173 65677516 65679033 NC_060933.1 CM021576.2 96.65 True relocation, inconsistency = 4514237 71639924 71646780 65688503 65681547 NC_060933.1 CM021576.2 97.04 True local misassembly 71642093 71643693 65690114 65688504 NC_060933.1 CM021576.2 97.31 True fake: not a misassembly (possible transposable element) 55387693 55391523 65690115 65694055 NC_060933.1 CM021576.2 95.3 True fake: not a misassembly (possible transposable element) 71635154 71639922 65702572 65697809 NC_060933.1 CM021576.2 98.83 True relocation, inconsistency = 7230 71627174 71627757 65703322 65702739 NC_060933.1 CM021576.2 99.66 True local misassembly 71623357 71627834 65710011 65705544 NC_060933.1 CM021576.2 98.86 True relocation, inconsistency = 17837097 53785363 53785981 65710888 65710290 NC_060933.1 CM021576.2 95.25 True relocation, inconsistency = 12044830 65830812 65843691 65710889 65723703 NC_060933.1 CM021576.2 97.81 True relocation, inconsistency = 5740896 71584588 71613966 65753227 65723704 NC_060933.1 CM021576.2 97.14 True relocation, inconsistency = 16256816 55325820 55327771 65755179 65753228 NC_060933.1 CM021576.2 99.85 True relocation, inconsistency = 13374 55311128 55312184 65755441 65756497 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 55312378 55313990 65756686 65758298 NC_060933.1 CM021576.2 99.63 True indel: indel (> 5bp) 55314240 55315394 65758568 65759722 NC_060933.1 CM021576.2 99.65 True local misassembly 55315917 55316595 65760255 65760933 NC_060933.1 CM021576.2 99.41 True indel: indel (<= 5bp) 55316601 55317153 65760934 65761486 NC_060933.1 CM021576.2 99.46 True indel: indel (<= 5bp) 55317154 55317800 65761492 65762138 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 55317801 55318969 65762154 65763322 NC_060933.1 CM021576.2 99.91 True local misassembly 55321101 55321701 65763535 65764135 NC_060933.1 CM021576.2 99.67 True indel: indel (> 5bp) 55321712 55322315 65764136 65764739 NC_060933.1 CM021576.2 99.83 True indel: stretch of mismatches 55322385 55323036 65764809 65765460 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 55323047 55324274 65765461 65766688 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 55324280 55324925 65766689 65767334 NC_060933.1 CM021576.2 99.69 True local misassembly 55325618 55326231 65768047 65768660 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 55326657 55328922 65769071 65771336 NC_060933.1 CM021576.2 99.78 True indel: indel (<= 5bp) 55329182 55330088 65771591 65772497 NC_060933.1 CM021576.2 99.78 True relocation, inconsistency = 20627403 75959394 75959908 65774914 65774400 NC_060933.1 CM021576.2 98.45 True local misassembly 75958027 75958733 65776251 65775545 NC_060933.1 CM021576.2 98.87 True relocation, inconsistency = 4277632 71677726 71680262 65778933 65776384 NC_060933.1 CM021576.2 96.53 True relocation, inconsistency = 16324976 55330264 55352215 65779468 65801338 NC_060933.1 CM021576.2 97.77 True local misassembly 55345806 55358121 65801789 65813690 NC_060933.1 CM021576.2 95.69 True relocation, inconsistency = -9352 55348770 55366171 65813691 65830953 NC_060933.1 CM021576.2 97.33 True relocation, inconsistency = 10576071 65942243 65945447 65830954 65834168 NC_060933.1 CM021576.2 97.05 True local misassembly 65940791 65945447 65834270 65838907 NC_060933.1 CM021576.2 97.87 True relocation, inconsistency = 7027550 72973099 72993083 65839009 65858605 NC_060933.1 CM021576.2 96.13 True relocation, inconsistency = 20599 73013683 73019235 65858606 65864098 NC_060933.1 CM021576.2 96.71 True relocation, inconsistency = -7030782 65988454 66003590 65864099 65879310 NC_060933.1 CM021576.2 98.44 True relocation, inconsistency = 7027451 73031333 73038664 65879602 65887079 NC_060933.1 CM021576.2 96.56 True relocation, inconsistency = -9615 73031333 73043192 65889363 65901353 NC_060933.1 CM021576.2 97.85 True relocation, inconsistency = 25856 73069844 73070464 65902149 65902769 NC_060933.1 CM021576.2 99.68 True indel: indel (<= 5bp) 73070470 73071390 65902770 65903690 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 73071391 73071920 65903741 65904270 NC_060933.1 CM021576.2 99.81 True local misassembly 73072605 73073488 65905125 65906008 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 73073489 73074644 65906014 65907169 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = -7068784 66005935 66008082 65907244 65909376 NC_060933.1 CM021576.2 99.02 True relocation, inconsistency = -10572962 55435121 55438101 65909377 65912397 NC_060933.1 CM021576.2 96.69 True relocation, inconsistency = 17607244 73045346 73055071 65912398 65922192 NC_060933.1 CM021576.2 96.78 True relocation, inconsistency = -7032450 66022886 66057548 65922457 65957137 NC_060933.1 CM021576.2 98.58 True local misassembly 66060640 66107221 65960251 66006892 NC_060933.1 CM021576.2 99.21 True local misassembly 66107836 66141944 66007513 66041745 NC_060933.1 CM021576.2 97.89 True indel: stretch of mismatches 66142098 66158482 66041899 66058198 NC_060933.1 CM021576.2 98.29 True local misassembly 66159413 66181411 66059234 66081278 NC_060933.1 CM021576.2 98.39 True indel: indel (<= 5bp) 66181560 66214613 66081432 66114418 NC_060933.1 CM021576.2 98.26 True local misassembly 66217097 66221380 66116790 66121078 NC_060933.1 CM021576.2 99.39 True local misassembly 66224998 66244830 66124502 66143974 NC_060933.1 CM021576.2 96.89 True indel: indel (> 5bp) 66245193 66255664 66144315 66154785 NC_060933.1 CM021576.2 98.78 True local misassembly 66258582 66268466 66157477 66167238 NC_060933.1 CM021576.2 97.23 True local misassembly 66270176 66271001 66168921 66169746 NC_060933.1 CM021576.2 96.73 True local misassembly 66273660 66276086 66172326 66174710 NC_060933.1 CM021576.2 95.02 True indel: indel (> 5bp) 66276573 66280572 66175178 66179125 NC_060933.1 CM021576.2 97.05 True relocation, inconsistency = -10593402 55689925 55701328 66181880 66193303 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = 10594043 66301652 66302248 66199584 66200165 NC_060933.1 CM021576.2 95.98 True local misassembly 66303460 66320850 66201323 66218457 NC_060933.1 CM021576.2 97.9 True local misassembly 66322898 66326662 66220751 66224530 NC_060933.1 CM021576.2 98.89 True local misassembly 66327426 66329767 66225303 66227644 NC_060933.1 CM021576.2 99.74 True local misassembly 66331243 66340872 66229005 66238649 NC_060933.1 CM021576.2 98.34 True local misassembly 66341518 66342490 66239238 66240210 NC_060933.1 CM021576.2 99.59 True local misassembly 66343564 66381643 66241236 66279275 NC_060933.1 CM021576.2 98.93 True fake: not a misassembly (possible transposable element) 62565129 62566079 66281237 66280287 NC_060933.1 CM021576.2 99.05 True fake: not a misassembly (possible transposable element) 66386108 66422529 66283682 66320081 NC_060933.1 CM021576.2 99.8 True local misassembly 66423426 66443787 66321145 66341411 NC_060933.1 CM021576.2 98.0 True fake: not a misassembly (possible transposable element) 54678670 54679272 66341833 66342435 NC_060933.1 CM021576.2 98.34 True fake: not a misassembly (possible transposable element) 66447667 66465955 66345422 66363550 NC_060933.1 CM021576.2 97.08 True local misassembly 66466768 66467491 66364304 66365027 NC_060933.1 CM021576.2 98.07 True local misassembly 66469072 66495830 66366520 66393749 NC_060933.1 CM021576.2 96.44 True local misassembly 66499551 66524068 66397570 66421766 NC_060933.1 CM021576.2 96.74 True local misassembly 66526759 66528036 66424608 66425885 NC_060933.1 CM021576.2 99.3 True local misassembly 66529425 66530740 66427488 66428803 NC_060933.1 CM021576.2 99.54 True local misassembly 66530982 66535516 66428849 66433308 NC_060933.1 CM021576.2 96.36 True local misassembly 66538693 66568583 66436382 66466225 NC_060933.1 CM021576.2 99.21 True indel: indel (> 5bp) 66568927 66569784 66466560 66467417 NC_060933.1 CM021576.2 98.72 True local misassembly 66573743 66577338 66471379 66474939 NC_060933.1 CM021576.2 96.19 True local misassembly 66578120 66794057 66475734 66691642 NC_060933.1 CM021576.2 99.88 True local misassembly 66794734 66795781 66692311 66693338 NC_060933.1 CM021576.2 95.04 True local misassembly 66799940 66806207 66697515 66703773 NC_060933.1 CM021576.2 95.66 True local misassembly 66808088 66870799 66705641 66768357 NC_060933.1 CM021576.2 99.91 True local misassembly 66872016 66872577 66769577 66770138 NC_060933.1 CM021576.2 98.75 True indel: indel (> 5bp) 66872921 66873569 66770472 66771120 NC_060933.1 CM021576.2 98.77 True local misassembly 66874757 66876543 66772393 66774179 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = -10626020 56253172 56254139 66776828 66777795 NC_060933.1 CM021576.2 99.17 True local misassembly 56254985 56255664 66778594 66779273 NC_060933.1 CM021576.2 99.12 True local misassembly 56257335 56257858 66780938 66781461 NC_060933.1 CM021576.2 99.24 True relocation, inconsistency = 12417148 68676113 68676831 66783286 66782568 NC_060933.1 CM021576.2 98.89 True relocation, inconsistency = 1744039 66891880 66926208 66789152 66823438 NC_060933.1 CM021576.2 99.47 True indel: stretch of mismatches 66926565 66927289 66823795 66824514 NC_060933.1 CM021576.2 97.38 True indel: indel (> 5bp) 66927616 66935061 66824792 66832180 NC_060933.1 CM021576.2 96.36 True local misassembly 66935722 67073867 66832804 66970900 NC_060933.1 CM021576.2 99.79 True local misassembly 67074489 67080690 66971478 66977739 NC_060933.1 CM021576.2 97.24 True fake: not a misassembly (possible transposable element) 66007114 66008466 66979774 66981142 NC_060933.1 CM021576.2 95.37 True fake: not a misassembly (possible transposable element) 67085344 67087925 66982612 66985193 NC_060933.1 CM021576.2 99.65 True local misassembly 67090165 67091983 66987310 66989193 NC_060933.1 CM021576.2 95.24 True relocation, inconsistency = -10608945 56487161 56487669 66993316 66993824 NC_060933.1 CM021576.2 98.43 True indel: indel (> 5bp) 56488146 56488923 66994286 66995063 NC_060933.1 CM021576.2 99.36 True local misassembly 56489517 56490060 66995647 66996190 NC_060933.1 CM021576.2 99.63 True local misassembly 56492317 56492898 66998572 66999153 NC_060933.1 CM021576.2 99.14 True local misassembly 56493634 56494277 66999869 67000512 NC_060933.1 CM021576.2 98.6 True relocation, inconsistency = 16549789 73045161 73048241 67001607 67004642 NC_060933.1 CM021576.2 95.56 True relocation, inconsistency = -5940659 67107745 67173046 67004805 67070092 NC_060933.1 CM021576.2 99.87 True local misassembly 67185987 67192483 67082648 67089145 NC_060933.1 CM021576.2 99.74 True local misassembly 67196024 67201618 67092621 67098155 NC_060933.1 CM021576.2 97.08 True local misassembly 67204632 67213378 67100991 67109712 NC_060933.1 CM021576.2 97.64 True fake: not a misassembly (possible transposable element) 61195314 61196087 67113394 67114157 NC_060933.1 CM021576.2 95.99 True fake: not a misassembly (possible transposable element) 67221352 67241423 67117330 67137401 NC_060933.1 CM021576.2 99.87 True local misassembly 67242634 67272809 67139440 67168747 NC_060933.1 CM021576.2 96.46 True local misassembly 67277572 67304325 67173313 67200037 NC_060933.1 CM021576.2 99.28 True indel: indel (> 5bp) 67304672 67316422 67200375 67212075 NC_060933.1 CM021576.2 98.6 True local misassembly 67317471 67342708 67213140 67238426 NC_060933.1 CM021576.2 99.1 True relocation, inconsistency = -10592611 56752001 56752867 67240330 67241196 NC_060933.1 CM021576.2 97.02 True relocation, inconsistency = 4925922 51822007 51822631 67245253 67244644 NC_060933.1 CM021576.2 96.64 True relocation, inconsistency = 4922539 56745626 56747422 67245709 67247510 NC_060933.1 CM021576.2 97.9 True local misassembly 56749253 56806082 67249361 67306200 NC_060933.1 CM021576.2 99.65 True fake: not a misassembly (possible transposable element) 67417179 67422807 67306274 67311932 NC_060933.1 CM021576.2 98.98 True fake: not a misassembly (possible transposable element) 56810737 56818456 67311933 67319687 NC_060933.1 CM021576.2 99.01 True relocation, inconsistency = 10596679 67415136 67416042 67319688 67320594 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = 27545 67443588 67501816 67320595 67378602 NC_060933.1 CM021576.2 98.93 True local misassembly 67502908 67677295 67379668 67553883 NC_060933.1 CM021576.2 99.62 True fake: not a misassembly (possible transposable element) 53401651 53402573 67559058 67558136 NC_060933.1 CM021576.2 96.57 True fake: not a misassembly (possible transposable element) 67682785 67687921 67559246 67564462 NC_060933.1 CM021576.2 96.39 True local misassembly 67694065 67709013 67570411 67585389 NC_060933.1 CM021576.2 99.45 True relocation, inconsistency = -10605355 57106041 57106755 67587772 67588486 NC_060933.1 CM021576.2 99.44 True local misassembly 57109272 57110099 67590509 67591336 NC_060933.1 CM021576.2 99.52 True local misassembly 57110569 57111111 67591861 67592403 NC_060933.1 CM021576.2 99.08 True local misassembly 57113532 57114127 67594109 67594704 NC_060933.1 CM021576.2 99.5 True relocation, inconsistency = 10608337 67722773 67723320 67595013 67595560 NC_060933.1 CM021576.2 99.27 True local misassembly 67724365 67724967 67596585 67597187 NC_060933.1 CM021576.2 99.34 True local misassembly 67722423 67723571 67598960 67600098 NC_060933.1 CM021576.2 97.74 True indel: stretch of mismatches 67723652 67725168 67600179 67601709 NC_060933.1 CM021576.2 96.5 True local misassembly 67724577 67726178 67602102 67603687 NC_060933.1 CM021576.2 98.44 True local misassembly 67732238 67738687 67608727 67615266 NC_060933.1 CM021576.2 96.74 True local misassembly 67743937 67774881 67620423 67651356 NC_060933.1 CM021576.2 99.83 True relocation, inconsistency = 7894951 75671984 75672869 67653508 67654368 NC_060933.1 CM021576.2 95.49 True relocation, inconsistency = -49472 75625766 75626869 67656737 67657840 NC_060933.1 CM021576.2 97.67 True relocation, inconsistency = -4837605 70789443 70790301 67658019 67658877 NC_060933.1 CM021576.2 97.96 True relocation, inconsistency = -3007660 67782642 67789722 67658878 67665868 NC_060933.1 CM021576.2 95.58 True fake: not a misassembly (possible transposable element) 76113294 76115210 67665869 67667775 NC_060933.1 CM021576.2 99.06 True fake: not a misassembly (possible transposable element) 67792587 67865008 67668699 67741139 NC_060933.1 CM021576.2 99.52 True indel: stretch of mismatches 67865083 67874695 67741214 67750786 NC_060933.1 CM021576.2 99.34 True fake: not a misassembly (possible transposable element) 57232809 57234112 67750787 67752055 NC_060933.1 CM021576.2 97.06 True fake: not a misassembly (possible transposable element) 67879391 67897201 67755468 67773188 NC_060933.1 CM021576.2 97.87 True local misassembly 67898714 67915478 67774689 67791488 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = 42278 67957757 68038554 67791489 67872261 NC_060933.1 CM021576.2 99.59 True fake: not a misassembly (possible transposable element) 69636174 69636941 67875390 67874623 NC_060933.1 CM021576.2 99.35 True fake: not a misassembly (possible transposable element) 68044967 68106738 67878478 67940209 NC_060933.1 CM021576.2 99.74 True local misassembly 68107900 68155178 67941445 67988723 NC_060933.1 CM021576.2 99.97 True indel: stretch of mismatches 68155335 68171964 67988880 68005509 NC_060933.1 CM021576.2 99.93 True indel: indel (> 5bp) 68172201 68192362 68005766 68025926 NC_060933.1 CM021576.2 99.9 True relocation, inconsistency = 6012843 74205919 74208088 68028828 68026640 NC_060933.1 CM021576.2 96.68 True local misassembly 74202223 74205297 68032449 68029395 NC_060933.1 CM021576.2 97.23 True local misassembly 74195112 74201691 68039368 68032863 NC_060933.1 CM021576.2 97.32 True relocation, inconsistency = 5931907 68207061 68262352 68040221 68095246 NC_060933.1 CM021576.2 98.6 True indel: indel (> 5bp) 68262633 68355811 68095507 68188710 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = 15997531 52263294 52263834 68190518 68189978 NC_060933.1 CM021576.2 98.89 True relocation, inconsistency = -10958576 63219339 63220013 68193044 68192375 NC_060933.1 CM021576.2 97.63 True relocation, inconsistency = 5153446 68377552 68378055 68197137 68197641 NC_060933.1 CM021576.2 98.81 True relocation, inconsistency = -10599126 57780353 57783664 68199065 68202382 NC_060933.1 CM021576.2 97.28 True relocation, inconsistency = 5325971 52451976 52452610 68204788 68204154 NC_060933.1 CM021576.2 99.37 True indel: indel (> 5bp) 52451233 52451866 68205516 68204883 NC_060933.1 CM021576.2 98.9 True relocation, inconsistency = 50396 52398443 52400506 68207880 68205847 NC_060933.1 CM021576.2 95.21 True relocation, inconsistency = 15974874 68377778 68410573 68210278 68243059 NC_060933.1 CM021576.2 99.6 True local misassembly 68414633 68416459 68246722 68248489 NC_060933.1 CM021576.2 95.2 True local misassembly 68418377 68420476 68250421 68252540 NC_060933.1 CM021576.2 96.44 True local misassembly 68421876 68486191 68253985 68318199 NC_060933.1 CM021576.2 99.27 True relocation, inconsistency = -10624280 57864295 57876637 68320583 68332964 NC_060933.1 CM021576.2 98.77 True relocation, inconsistency = 10624388 68501842 68514281 68333781 68346265 NC_060933.1 CM021576.2 98.93 True local misassembly 68515645 68516289 68347680 68348324 NC_060933.1 CM021576.2 97.36 True local misassembly 68518037 68532455 68350163 68364439 NC_060933.1 CM021576.2 98.67 True indel: indel (> 5bp) 68532691 68533433 68364630 68365367 NC_060933.1 CM021576.2 97.58 True local misassembly 68536256 68546529 68368213 68378476 NC_060933.1 CM021576.2 99.32 True local misassembly 68552000 68563986 68383969 68395955 NC_060933.1 CM021576.2 99.97 True local misassembly 68566990 68603956 68398695 68436137 NC_060933.1 CM021576.2 98.18 True fake: not a misassembly (possible transposable element) 70378793 70381668 68438971 68436138 NC_060933.1 CM021576.2 95.56 True fake: not a misassembly (possible transposable element) 68607612 68685249 68439756 68517103 NC_060933.1 CM021576.2 99.42 True local misassembly 68685830 68854521 68517629 68686275 NC_060933.1 CM021576.2 99.74 True local misassembly 68856101 68920604 68687799 68752247 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = -10629821 58291524 58299528 68752988 68760938 NC_060933.1 CM021576.2 98.8 True local misassembly 58297112 58317270 68760939 68781202 NC_060933.1 CM021576.2 98.9 True relocation, inconsistency = 10636477 68953748 68960341 68781203 68787641 NC_060933.1 CM021576.2 97.6 True local misassembly 68956407 68960732 68787684 68792009 NC_060933.1 CM021576.2 99.39 True local misassembly 68959296 68971244 68792010 68803978 NC_060933.1 CM021576.2 99.23 True relocation, inconsistency = -7817 68963428 68993086 68803979 68833617 NC_060933.1 CM021576.2 99.19 True local misassembly 68994106 69011224 68833618 68850656 NC_060933.1 CM021576.2 99.17 True fake: not a misassembly (possible transposable element) 53689007 53690419 68852070 68850657 NC_060933.1 CM021576.2 95.1 True fake: not a misassembly (possible transposable element) 69008934 69010110 68852542 68853733 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = -10624806 58388408 58397006 68856837 68865485 NC_060933.1 CM021576.2 98.74 True relocation, inconsistency = 10621547 69026049 69027999 68872981 68874937 NC_060933.1 CM021576.2 98.91 True local misassembly 69027271 69035012 68874938 68882554 NC_060933.1 CM021576.2 97.87 True local misassembly 69039082 69040016 68882916 68883850 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 69040017 69041084 68883856 68884923 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 69041085 69042117 68884929 68885961 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 69042133 69042672 68885962 68886501 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 69042673 69043200 68886507 68887034 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 69043201 69045460 68887040 68889299 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 69045461 69046693 68889305 68890537 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = 8413 69055107 69056948 68890538 68892379 NC_060933.1 CM021576.2 99.78 True indel: indel (> 5bp) 69056949 69058072 68892390 68893513 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 69058078 69059270 68893514 68894706 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 69059276 69060867 68894707 68896298 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 69061133 69061916 68896574 68897357 NC_060933.1 CM021576.2 99.62 True indel: indel (<= 5bp) 69061917 69064545 68897363 68899991 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 69064551 69066971 68899992 68902412 NC_060933.1 CM021576.2 99.92 True indel: stretch of mismatches 69067127 69069183 68902568 68904624 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 69069189 69069731 68904625 68905167 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 69069808 69070881 68905254 68906327 NC_060933.1 CM021576.2 99.72 True indel: indel (<= 5bp) 69070882 69072068 68906333 68907519 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 69072074 69072631 68907520 68908077 NC_060933.1 CM021576.2 100.0 True local misassembly 69073196 69074363 68908632 68909799 NC_060933.1 CM021576.2 99.57 True indel: indel (<= 5bp) 69074364 69076502 68909805 68911943 NC_060933.1 CM021576.2 99.95 True indel: stretch of mismatches 69076648 69078337 68912089 68913778 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 69078338 69078846 68913809 68914317 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 69078847 69079566 68914323 68915042 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 69079572 69081941 68915043 68917412 NC_060933.1 CM021576.2 99.75 True indel: indel (<= 5bp) 69081942 69083402 68917418 68918878 NC_060933.1 CM021576.2 99.93 True local misassembly 69083958 69084498 68919414 68919954 NC_060933.1 CM021576.2 99.63 True indel: indel (<= 5bp) 69084628 69086123 68920089 68921584 NC_060933.1 CM021576.2 99.73 True indel: indel (> 5bp) 69086347 69087100 68921798 68922551 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 69087121 69087804 68922552 68923235 NC_060933.1 CM021576.2 99.71 True local misassembly 69087905 69092914 68923236 68928245 NC_060933.1 CM021576.2 99.74 True relocation, inconsistency = -10627118 58467230 58467797 68929679 68930246 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 58467799 58468570 68930247 68931018 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = 10628208 69097579 69122376 68931819 68956621 NC_060933.1 CM021576.2 99.17 True local misassembly 69115802 69130998 68956656 68971832 NC_060933.1 CM021576.2 98.82 True relocation, inconsistency = -10603446 58527621 58528838 68971901 68973123 NC_060933.1 CM021576.2 99.11 True relocation, inconsistency = -7624 58521215 58549905 68973124 69001793 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = 10645900 69195806 69200398 69001794 69006406 NC_060933.1 CM021576.2 98.56 True fake: not a misassembly (possible transposable element) 58566168 58572284 69006407 69012543 NC_060933.1 CM021576.2 98.9 True fake: not a misassembly (possible transposable element) 69202825 69205749 69012544 69015478 NC_060933.1 CM021576.2 99.43 True relocation, inconsistency = 13700 69219450 69220837 69015479 69016886 NC_060933.1 CM021576.2 98.27 True relocation, inconsistency = -10630720 58590209 58641133 69016978 69067831 NC_060933.1 CM021576.2 98.4 True local misassembly 58641164 58647844 69067976 69074571 NC_060933.1 CM021576.2 97.78 True relocation, inconsistency = 10629501 69282151 69304363 69079377 69101378 NC_060933.1 CM021576.2 98.32 True local misassembly 69305457 69309832 69102471 69106855 NC_060933.1 CM021576.2 99.29 True local misassembly 69310482 69373676 69107505 69170804 NC_060933.1 CM021576.2 99.72 True local misassembly 69374670 69390009 69171763 69187102 NC_060933.1 CM021576.2 99.34 True local misassembly 69390501 69401896 69187673 69199128 NC_060933.1 CM021576.2 98.43 True fake: not a misassembly (possible transposable element) 69416412 69421148 69199129 69203829 NC_060933.1 CM021576.2 98.58 True fake: not a misassembly (possible transposable element) 69406704 69413699 69203830 69210830 NC_060933.1 CM021576.2 99.14 True fake: not a misassembly (possible transposable element) 57830445 57832830 69213313 69210936 NC_060933.1 CM021576.2 96.43 True fake: not a misassembly (possible transposable element) 69416313 69429782 69213400 69226809 NC_060933.1 CM021576.2 99.02 True indel: stretch of mismatches 69429783 69471103 69226810 69268060 NC_060933.1 CM021576.2 98.89 True local misassembly 69472855 69488976 69269593 69285724 NC_060933.1 CM021576.2 99.12 True relocation, inconsistency = -15095314 54393961 54394703 69286023 69286765 NC_060933.1 CM021576.2 98.92 True relocation, inconsistency = 3325806 57723810 57724342 69290598 69290066 NC_060933.1 CM021576.2 99.06 True local misassembly 57721434 57722405 69292869 69291898 NC_060933.1 CM021576.2 99.07 True indel: indel (> 5bp) 57720750 57721328 69293568 69292990 NC_060933.1 CM021576.2 99.31 True indel: indel (<= 5bp) 57719799 57720749 69294524 69293574 NC_060933.1 CM021576.2 99.58 True indel: indel (> 5bp) 57719278 57719788 69295035 69294525 NC_060933.1 CM021576.2 99.61 True local misassembly 57716728 57718612 69297305 69295421 NC_060933.1 CM021576.2 99.63 True relocation, inconsistency = 11772243 69491814 69503916 69298264 69310314 NC_060933.1 CM021576.2 97.58 True relocation, inconsistency = -6790030 62714205 62724090 69310633 69320380 NC_060933.1 CM021576.2 97.18 True relocation, inconsistency = -8725788 53998883 54008339 69320961 69330186 NC_060933.1 CM021576.2 95.82 True relocation, inconsistency = 15507187 69515527 69516912 69330187 69331577 NC_060933.1 CM021576.2 98.86 True relocation, inconsistency = -6736769 62780144 62798639 69331578 69349934 NC_060933.1 CM021576.2 95.2 True relocation, inconsistency = -3873129 58925511 58971866 69349935 69396296 NC_060933.1 CM021576.2 97.68 True local misassembly 58970882 58982566 69396482 69408336 NC_060933.1 CM021576.2 97.62 True relocation, inconsistency = 10636105 69618672 69621866 69408337 69411531 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = -10620762 59001225 59001988 69411652 69412415 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 59001994 59002836 69412416 69413258 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 59002837 59004115 69413264 69414542 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 59004116 59004845 69414553 69415282 NC_060933.1 CM021576.2 99.59 True indel: indel (<= 5bp) 59004846 59005787 69415288 69416229 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 59005788 59007129 69416235 69417576 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 59007130 59008078 69417582 69418530 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 59008084 59009445 69418531 69419892 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 59009446 59010141 69419898 69420593 NC_060933.1 CM021576.2 99.43 True local misassembly 59010839 59012631 69421246 69423038 NC_060933.1 CM021576.2 99.78 True indel: indel (> 5bp) 59012962 59014073 69423359 69424470 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 59014079 59015007 69424471 69425399 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 59015008 59015854 69425410 69426256 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 59015860 59017140 69426257 69427537 NC_060933.1 CM021576.2 99.92 True local misassembly 59017501 59021059 69429835 69433393 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 59021060 59022121 69433399 69434460 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 59022122 59024656 69434471 69437005 NC_060933.1 CM021576.2 99.76 True indel: indel (> 5bp) 59024657 59027006 69437016 69439365 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 59027007 59027694 69439371 69440058 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 59027700 59029416 69440059 69441775 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 59029447 59030151 69441826 69442530 NC_060933.1 CM021576.2 99.91 True relocation, inconsistency = 7020 59037172 59046092 69442531 69451411 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = -4822435 54223773 54225349 69451527 69453073 NC_060933.1 CM021576.2 95.52 True relocation, inconsistency = 15457922 69683272 69684873 69453074 69454675 NC_060933.1 CM021576.2 99.82 True local misassembly 69690895 69698156 69454676 69461992 NC_060933.1 CM021576.2 98.31 True local misassembly 69693497 69699127 69461993 69467633 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = 1814532 67864490 67878964 69481969 69467634 NC_060933.1 CM021576.2 97.39 True relocation, inconsistency = 13591382 54271722 54272892 69482185 69483355 NC_060933.1 CM021576.2 99.49 True local misassembly 54274062 54274626 69484325 69484889 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = 15428842 69703469 69711349 69492800 69484890 NC_060933.1 CM021576.2 99.47 True relocation, inconsistency = 5259804 74971154 74971899 69492801 69493546 NC_060933.1 CM021576.2 99.4 True relocation, inconsistency = -5263461 69711404 69715435 69496512 69500563 NC_060933.1 CM021576.2 99.46 True local misassembly 69717492 69719745 69500564 69502822 NC_060933.1 CM021576.2 99.74 True relocation, inconsistency = -10628163 59091583 59093749 69502823 69504979 NC_060933.1 CM021576.2 96.62 True relocation, inconsistency = 54262 59148012 59155652 69504980 69512599 NC_060933.1 CM021576.2 98.41 True relocation, inconsistency = -59841 59095812 59099196 69512600 69515989 NC_060933.1 CM021576.2 99.03 True local misassembly 59095795 59139383 69516420 69560048 NC_060933.1 CM021576.2 98.2 True relocation, inconsistency = 3947001 63086385 63087807 69560049 69561461 NC_060933.1 CM021576.2 97.29 True relocation, inconsistency = 6680499 69768307 69782855 69561462 69575945 NC_060933.1 CM021576.2 99.01 True relocation, inconsistency = -10610320 59172536 59228876 69575946 69632301 NC_060933.1 CM021576.2 99.12 True relocation, inconsistency = 9180693 68413828 68424393 69642787 69632302 NC_060933.1 CM021576.2 96.93 True relocation, inconsistency = 1438081 69862475 69881034 69642788 69661342 NC_060933.1 CM021576.2 99.32 True relocation, inconsistency = -10613787 59267248 59273638 69661343 69667778 NC_060933.1 CM021576.2 98.65 True fake: not a misassembly (possible transposable element) 59409559 59410282 69670862 69671585 NC_060933.1 CM021576.2 98.34 True fake: not a misassembly (possible transposable element) 59273622 59303099 69672156 69701838 NC_060933.1 CM021576.2 98.5 True relocation, inconsistency = 10609229 69912329 69920178 69701839 69709632 NC_060933.1 CM021576.2 98.22 True relocation, inconsistency = -10614171 59306008 59333592 69709633 69737419 NC_060933.1 CM021576.2 97.77 True relocation, inconsistency = 10626375 69959968 69989395 69737420 69766783 NC_060933.1 CM021576.2 99.02 True local misassembly 69992436 70033956 69767014 69808511 NC_060933.1 CM021576.2 98.87 True indel: indel (> 5bp) 70034013 70055893 69808588 69830364 NC_060933.1 CM021576.2 98.47 True relocation, inconsistency = -10628402 59427494 59438416 69830367 69841042 NC_060933.1 CM021576.2 96.45 True relocation, inconsistency = 10625067 70063484 70097104 69841043 69874667 NC_060933.1 CM021576.2 98.77 True relocation, inconsistency = -81337 70015768 70099608 69874668 69958499 NC_060933.1 CM021576.2 99.13 True local misassembly 70100237 70134029 69958500 69991309 NC_060933.1 CM021576.2 96.41 True local misassembly 70134854 70135824 69992059 69993024 NC_060933.1 CM021576.2 97.22 True local misassembly 70137638 70150587 69995700 70008689 NC_060933.1 CM021576.2 97.29 True fake: not a misassembly (possible transposable element) 73549980 73553162 70011847 70008690 NC_060933.1 CM021576.2 97.09 True fake: not a misassembly (possible transposable element) 70154116 70178528 70012431 70036858 NC_060933.1 CM021576.2 99.67 True local misassembly 70183172 70185432 70041564 70043819 NC_060933.1 CM021576.2 97.88 True local misassembly 70187648 70189664 70045876 70047851 NC_060933.1 CM021576.2 96.43 True relocation, inconsistency = -10628467 59568052 59592553 70054706 70079187 NC_060933.1 CM021576.2 99.02 True relocation, inconsistency = 10627211 70219765 70220593 70079188 70080016 NC_060933.1 CM021576.2 99.64 True indel: indel (> 5bp) 70220848 70222580 70080281 70082013 NC_060933.1 CM021576.2 99.6 True indel: indel (<= 5bp) 70222581 70225428 70082019 70084866 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 70225434 70226180 70084867 70085613 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 70226186 70227310 70085614 70086738 NC_060933.1 CM021576.2 99.82 True relocation, inconsistency = 10703 70238014 70238585 70086739 70087310 NC_060933.1 CM021576.2 99.65 True indel: indel (> 5bp) 70238758 70239757 70087473 70088472 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 70239763 70242953 70088473 70091663 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 70243304 70244594 70092009 70093299 NC_060933.1 CM021576.2 99.92 True indel: indel (> 5bp) 70244610 70245131 70093300 70093821 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 70245132 70246258 70093827 70094953 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 70246494 70247063 70095174 70095743 NC_060933.1 CM021576.2 99.65 True indel: indel (<= 5bp) 70247064 70248621 70095749 70097306 NC_060933.1 CM021576.2 100.0 True local misassembly 70249217 70250430 70097912 70099125 NC_060933.1 CM021576.2 99.75 True indel: indel (<= 5bp) 70250431 70252231 70099131 70100931 NC_060933.1 CM021576.2 99.89 True indel: stretch of mismatches 70252364 70253147 70101064 70101847 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 70253556 70254387 70102261 70103092 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 70254388 70255576 70103098 70104286 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 70255577 70256449 70104292 70105164 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 70256450 70257595 70105170 70106315 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 70257596 70258267 70106321 70106992 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 70258268 70259051 70106998 70107781 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 70259067 70259799 70107782 70108514 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 70259854 70262658 70108515 70111319 NC_060933.1 CM021576.2 99.96 True indel: indel (> 5bp) 70262689 70264455 70111320 70113086 NC_060933.1 CM021576.2 99.94 True local misassembly 70265776 70266915 70114417 70115556 NC_060933.1 CM021576.2 99.65 True indel: indel (<= 5bp) 70266916 70267689 70115562 70116335 NC_060933.1 CM021576.2 99.61 True indel: indel (<= 5bp) 70267690 70268416 70116341 70117067 NC_060933.1 CM021576.2 100.0 True local misassembly 70268934 70270154 70117585 70118805 NC_060933.1 CM021576.2 99.43 True local misassembly 70271004 70271887 70119655 70120538 NC_060933.1 CM021576.2 99.91 True relocation, inconsistency = -10627879 59644009 59649476 70120539 70126006 NC_060933.1 CM021576.2 97.39 True relocation, inconsistency = -14382 59635095 59635735 70126007 70126647 NC_060933.1 CM021576.2 99.46 True indel: indel (> 5bp) 59635902 59636594 70126834 70127526 NC_060933.1 CM021576.2 99.13 True local misassembly 59637200 59637723 70128137 70128660 NC_060933.1 CM021576.2 99.05 True local misassembly 59641936 59642751 70130355 70131170 NC_060933.1 CM021576.2 99.51 True local misassembly 59641949 59642901 70133065 70134017 NC_060933.1 CM021576.2 99.69 True local misassembly 59645339 59645877 70134018 70134556 NC_060933.1 CM021576.2 99.86 True local misassembly 59644661 59645258 70136082 70136679 NC_060933.1 CM021576.2 99.33 True indel: indel (<= 5bp) 59645264 59645927 70136680 70137343 NC_060933.1 CM021576.2 99.7 True local misassembly 59647215 59691605 70137377 70181443 NC_060933.1 CM021576.2 98.4 True relocation, inconsistency = 14742861 74434467 74444557 70181444 70191559 NC_060933.1 CM021576.2 95.28 True relocation, inconsistency = -14734167 59710391 59716302 70191560 70197476 NC_060933.1 CM021576.2 98.6 True relocation, inconsistency = 14720690 74436993 74444557 70197477 70205071 NC_060933.1 CM021576.2 95.55 True relocation, inconsistency = -14741462 59704034 59725601 70206010 70227577 NC_060933.1 CM021576.2 99.4 True local misassembly 59722045 59732175 70227614 70237744 NC_060933.1 CM021576.2 99.19 True relocation, inconsistency = 10648474 70381260 70382515 70238355 70239645 NC_060933.1 CM021576.2 96.09 True relocation, inconsistency = 18909 70401425 70417285 70239646 70255577 NC_060933.1 CM021576.2 99.0 True relocation, inconsistency = -10742705 59674730 59691605 70255727 70272637 NC_060933.1 CM021576.2 98.97 True relocation, inconsistency = 14742861 74434467 74444557 70272638 70282738 NC_060933.1 CM021576.2 95.43 True relocation, inconsistency = -4111126 70334370 70355937 70283677 70305244 NC_060933.1 CM021576.2 99.33 True relocation, inconsistency = -10633929 59722045 59732175 70305281 70315396 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = 18138 59750924 59752179 70316007 70317287 NC_060933.1 CM021576.2 96.5 True relocation, inconsistency = 18909 59771089 59786949 70317288 70333199 NC_060933.1 CM021576.2 99.08 True relocation, inconsistency = 16996 59803946 59804603 70333200 70333857 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 59804604 59805860 70333863 70335119 NC_060933.1 CM021576.2 99.84 True relocation, inconsistency = 7232 59813551 59814290 70335578 70336317 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 59814401 59816042 70336398 70338039 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 59816053 59819527 70338040 70341514 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 59819533 59820943 70341515 70342925 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 59820949 59822165 70342926 70344142 NC_060933.1 CM021576.2 99.84 True local misassembly 59822665 59824398 70344647 70346380 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 59824429 59825131 70346381 70347083 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 59825132 59826469 70347089 70348426 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 59826701 59828062 70348653 70350014 NC_060933.1 CM021576.2 99.93 True indel: indel (> 5bp) 59828430 59831060 70350402 70353032 NC_060933.1 CM021576.2 99.85 True indel: indel (> 5bp) 59831061 59832841 70353043 70354823 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 59832842 59833549 70354829 70355536 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 59833674 59835371 70355676 70357373 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 59835377 59837273 70357374 70359270 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 59837279 59837919 70359271 70359911 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 59837920 59839911 70359922 70361913 NC_060933.1 CM021576.2 99.7 True indel: indel (> 5bp) 59839912 59841258 70361929 70363275 NC_060933.1 CM021576.2 99.93 True indel: stretch of mismatches 59841450 59841967 70363467 70363984 NC_060933.1 CM021576.2 99.61 True local misassembly 59842668 59843970 70364695 70365997 NC_060933.1 CM021576.2 99.54 True relocation, inconsistency = 12758 59856739 59917387 70366008 70426696 NC_060933.1 CM021576.2 99.1 True local misassembly 59918272 59946058 70426697 70454433 NC_060933.1 CM021576.2 98.77 True indel: indel (> 5bp) 59946336 59951808 70454767 70460185 NC_060933.1 CM021576.2 98.29 True relocation, inconsistency = 10632645 70591193 70603263 70466925 70478980 NC_060933.1 CM021576.2 99.59 True local misassembly 70605081 70615412 70480818 70491124 NC_060933.1 CM021576.2 99.48 True local misassembly 70615958 70633470 70491561 70509103 NC_060933.1 CM021576.2 99.0 True local misassembly 70634971 70698707 70510579 70574295 NC_060933.1 CM021576.2 99.49 True fake: not a misassembly (possible transposable element) 60379147 60382726 70577820 70574297 NC_060933.1 CM021576.2 97.25 True fake: not a misassembly (possible transposable element) 70703112 70714256 70578589 70589714 NC_060933.1 CM021576.2 98.51 True fake: not a misassembly (possible transposable element) 60343130 60348749 70598328 70592729 NC_060933.1 CM021576.2 98.85 True fake: not a misassembly (possible transposable element) 70727002 70741421 70601903 70616367 NC_060933.1 CM021576.2 99.06 True local misassembly 70744333 70745265 70616628 70617535 NC_060933.1 CM021576.2 95.12 True relocation, inconsistency = -10633819 60112400 60124491 70618489 70630575 NC_060933.1 CM021576.2 99.13 True indel: indel (> 5bp) 60124764 60134580 70630842 70640688 NC_060933.1 CM021576.2 99.06 True relocation, inconsistency = 22273 60156854 60159242 70640689 70643036 NC_060933.1 CM021576.2 96.38 True relocation, inconsistency = 10609203 70772648 70786422 70647239 70661034 NC_060933.1 CM021576.2 98.51 True local misassembly 70787153 70801062 70661746 70675649 NC_060933.1 CM021576.2 98.33 True local misassembly 70802016 70811665 70676654 70686214 NC_060933.1 CM021576.2 98.32 True fake: not a misassembly (possible transposable element) 70979307 70980126 70687777 70686958 NC_060933.1 CM021576.2 96.22 True fake: not a misassembly (possible transposable element) 70815835 70838090 70690038 70712227 NC_060933.1 CM021576.2 98.99 True local misassembly 70840970 70846766 70714853 70720649 NC_060933.1 CM021576.2 98.8 True fake: not a misassembly (possible transposable element) 72752146 72755042 70723952 70721046 NC_060933.1 CM021576.2 99.52 True fake: not a misassembly (possible transposable element) 70849986 70867955 70723953 70741876 NC_060933.1 CM021576.2 99.07 True indel: indel (> 5bp) 70868491 70880435 70742352 70754221 NC_060933.1 CM021576.2 98.46 True relocation, inconsistency = -10652330 60231281 60236832 70757397 70762953 NC_060933.1 CM021576.2 99.46 True relocation, inconsistency = 12456474 72694595 72733234 70802441 70764242 NC_060933.1 CM021576.2 96.79 True fake: not a misassembly (possible transposable element) 70927708 70930198 70802442 70804922 NC_060933.1 CM021576.2 99.48 True fake: not a misassembly (possible transposable element) 72689718 72694429 70809644 70804923 NC_060933.1 CM021576.2 98.35 True relocation, inconsistency = 1740792 70930815 70948925 70809645 70827800 NC_060933.1 CM021576.2 98.82 True relocation, inconsistency = 1729583 72678509 72679511 70828803 70827801 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = 1701161 70965867 70974732 70831419 70840299 NC_060933.1 CM021576.2 98.29 True local misassembly 70974812 70986943 70841174 70853300 NC_060933.1 CM021576.2 99.16 True relocation, inconsistency = 1097984 72084928 72086025 70854398 70853301 NC_060933.1 CM021576.2 99.64 True local misassembly 72082859 72083831 70856392 70855420 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = 1087037 70990945 70995165 70856577 70860777 NC_060933.1 CM021576.2 99.21 True relocation, inconsistency = 25737 71020903 71033494 70860778 70873389 NC_060933.1 CM021576.2 99.23 True local misassembly 71029234 71074971 70873390 70918961 NC_060933.1 CM021576.2 98.63 True local misassembly 71081030 71112242 70919079 70950071 NC_060933.1 CM021576.2 98.59 True relocation, inconsistency = -10641860 60470383 60494035 70950072 70973889 NC_060933.1 CM021576.2 97.96 True relocation, inconsistency = 10665273 71159309 71198850 70973890 71013386 NC_060933.1 CM021576.2 99.03 True relocation, inconsistency = 20631 71219482 71221039 71013387 71014919 NC_060933.1 CM021576.2 99.02 True relocation, inconsistency = 1305541 72527163 72533721 71021503 71014920 NC_060933.1 CM021576.2 98.04 True relocation, inconsistency = 1279891 71224051 71247271 71021504 71044693 NC_060933.1 CM021576.2 99.45 True relocation, inconsistency = -10648564 60598708 60600766 71044694 71046768 NC_060933.1 CM021576.2 99.05 True relocation, inconsistency = 11893494 72494261 72514369 71066902 71046769 NC_060933.1 CM021576.2 98.46 True relocation, inconsistency = 18608278 53885366 53885982 71067504 71066903 NC_060933.1 CM021576.2 96.95 True relocation, inconsistency = -4311317 58195146 58196323 71069046 71067864 NC_060933.1 CM021576.2 95.74 True relocation, inconsistency = 13081182 71277573 71281528 71069114 71073094 NC_060933.1 CM021576.2 98.87 True relocation, inconsistency = -6323446 64958107 64960743 71073119 71075730 NC_060933.1 CM021576.2 98.38 True relocation, inconsistency = 17996 64978740 64982797 71075731 71079758 NC_060933.1 CM021576.2 96.95 True relocation, inconsistency = -4348761 60634037 60655873 71079759 71101630 NC_060933.1 CM021576.2 99.31 True relocation, inconsistency = 10660063 71315989 71336725 71101683 71122628 NC_060933.1 CM021576.2 98.38 True relocation, inconsistency = 1076391 72413117 72416481 71126028 71122629 NC_060933.1 CM021576.2 98.68 True local misassembly 72411645 72412631 71127889 71126903 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 72411061 72411639 71128468 71127890 NC_060933.1 CM021576.2 99.83 True local misassembly 72409942 72410484 71129582 71129040 NC_060933.1 CM021576.2 99.63 True local misassembly 72408429 72409030 71131125 71130524 NC_060933.1 CM021576.2 99.83 True local misassembly 72405681 72406534 71134153 71133300 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 72404696 72405680 71135143 71134159 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 72404037 72404695 71135807 71135149 NC_060933.1 CM021576.2 99.82 True relocation, inconsistency = 1036235 71345209 71367783 71135808 71159168 NC_060933.1 CM021576.2 95.09 True relocation, inconsistency = -22149 71345635 71374625 71159169 71188170 NC_060933.1 CM021576.2 99.13 True local misassembly 71374920 71379011 71188355 71192431 NC_060933.1 CM021576.2 99.02 True local misassembly 71380475 71466239 71193835 71279686 NC_060933.1 CM021576.2 98.36 True relocation, inconsistency = -15420 71450820 71468628 71279687 71297466 NC_060933.1 CM021576.2 98.2 True relocation, inconsistency = -16844253 54624376 54629319 71297467 71302355 NC_060933.1 CM021576.2 98.35 True relocation, inconsistency = 18110109 72739454 72746095 71309077 71302381 NC_060933.1 CM021576.2 95.92 True relocation, inconsistency = -20524 72753289 72753973 71315766 71315082 NC_060933.1 CM021576.2 99.71 True local misassembly 72751972 72752499 71317093 71316566 NC_060933.1 CM021576.2 99.81 True indel: indel (> 5bp) 72750086 72751961 71318969 71317094 NC_060933.1 CM021576.2 99.57 True local misassembly 72747095 72748206 71321610 71320499 NC_060933.1 CM021576.2 99.55 True indel: indel (<= 5bp) 72746315 72747094 71322395 71321616 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 72745307 72746055 71323383 71322635 NC_060933.1 CM021576.2 99.47 True relocation, inconsistency = 1269528 71468532 71474900 71324262 71330625 NC_060933.1 CM021576.2 98.91 True relocation, inconsistency = -6247548 65227479 65246666 71330752 71349970 NC_060933.1 CM021576.2 98.14 True relocation, inconsistency = 6248506 71495173 71505557 71349971 71360395 NC_060933.1 CM021576.2 98.67 True local misassembly 71504020 71515205 71360396 71371676 NC_060933.1 CM021576.2 98.62 True relocation, inconsistency = 34361 71549567 71590753 71371677 71412838 NC_060933.1 CM021576.2 99.33 True local misassembly 71591909 71611766 71413940 71433773 NC_060933.1 CM021576.2 99.49 True local misassembly 71612531 71645879 71434453 71467723 NC_060933.1 CM021576.2 98.81 True indel: indel (<= 5bp) 71645957 71648167 71467796 71470006 NC_060933.1 CM021576.2 99.28 True local misassembly 71649302 71691345 71471036 71512899 NC_060933.1 CM021576.2 98.91 True local misassembly 71694650 71699378 71516260 71520935 NC_060933.1 CM021576.2 96.24 True fake: not a misassembly (possible transposable element) 65730562 65731393 71523181 71522359 NC_060933.1 CM021576.2 98.08 True fake: not a misassembly (possible transposable element) 71698297 71700752 71523837 71526266 NC_060933.1 CM021576.2 97.69 True local misassembly 71705066 71722981 71526807 71544758 NC_060933.1 CM021576.2 99.26 True indel: indel (<= 5bp) 71723313 71752786 71545095 71574523 NC_060933.1 CM021576.2 99.45 True indel: indel (> 5bp) 71753144 71864445 71574860 71686066 NC_060933.1 CM021576.2 99.22 True indel: indel (> 5bp) 71864670 71891841 71686246 71713472 NC_060933.1 CM021576.2 99.17 True fake: not a misassembly (possible transposable element) 71912533 71914516 71714866 71716819 NC_060933.1 CM021576.2 96.29 True fake: not a misassembly (possible transposable element) 71896553 71910317 71717940 71731704 NC_060933.1 CM021576.2 99.81 True local misassembly 71911042 71921951 71732520 71743404 NC_060933.1 CM021576.2 98.94 True local misassembly 71931804 71967538 71752878 71788492 NC_060933.1 CM021576.2 99.27 True relocation, inconsistency = 11675 71979214 71981179 71788493 71790603 NC_060933.1 CM021576.2 97.45 True relocation, inconsistency = -22994 71960539 71961126 71792957 71793535 NC_060933.1 CM021576.2 99.57 True relocation, inconsistency = 11660 71972787 71985211 71793536 71806065 NC_060933.1 CM021576.2 98.03 True indel: indel (> 5bp) 71985327 72017979 71806166 71838758 NC_060933.1 CM021576.2 98.97 True indel: indel (> 5bp) 72018196 72038124 71838926 71858888 NC_060933.1 CM021576.2 98.73 True relocation, inconsistency = 27619 72066574 72068908 71859719 71862009 NC_060933.1 CM021576.2 97.35 True relocation, inconsistency = 17220511 54842644 54846061 71865359 71862011 NC_060933.1 CM021576.2 96.61 True relocation, inconsistency = 17198754 72045452 72075230 71865996 71895765 NC_060933.1 CM021576.2 98.65 True local misassembly 72076119 72099071 71896684 71919636 NC_060933.1 CM021576.2 99.37 True local misassembly 72101161 72110199 71921621 71930638 NC_060933.1 CM021576.2 96.5 True fake: not a misassembly (possible transposable element) 71006926 71010738 71934502 71930695 NC_060933.1 CM021576.2 98.88 True fake: not a misassembly (possible transposable element) 72116578 72165496 71936763 71985671 NC_060933.1 CM021576.2 99.16 True local misassembly 72168098 72179161 71988130 71999094 NC_060933.1 CM021576.2 97.52 True relocation, inconsistency = 6777777 65384815 65390320 72004515 71999095 NC_060933.1 CM021576.2 96.49 True relocation, inconsistency = 6785172 72179874 72181690 72008897 72010713 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 72181696 72185562 72010714 72014580 NC_060933.1 CM021576.2 99.92 True indel: indel (> 5bp) 72185653 72187507 72014661 72016515 NC_060933.1 CM021576.2 99.95 True indel: indel (> 5bp) 72187868 72189818 72016886 72018836 NC_060933.1 CM021576.2 99.85 True indel: indel (> 5bp) 72190144 72191584 72019117 72020557 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 72191750 72192508 72020723 72021481 NC_060933.1 CM021576.2 100.0 True local misassembly 72193452 72194636 72022455 72023639 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72194637 72195236 72023645 72024244 NC_060933.1 CM021576.2 99.67 True indel: indel (> 5bp) 72195247 72195771 72024245 72024769 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72196242 72198193 72025250 72027201 NC_060933.1 CM021576.2 99.74 True indel: indel (> 5bp) 72198194 72199581 72027212 72028599 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72199582 72201749 72028605 72030772 NC_060933.1 CM021576.2 99.95 True relocation, inconsistency = -22458039 49744157 49744834 72031219 72031896 NC_060933.1 CM021576.2 98.23 True relocation, inconsistency = 15588268 65335895 65348747 72047541 72034689 NC_060933.1 CM021576.2 98.79 True relocation, inconsistency = 10580607 54747446 54755287 72055239 72047542 NC_060933.1 CM021576.2 97.0 True relocation, inconsistency = 17471870 72227158 72291978 72055240 72117665 NC_060933.1 CM021576.2 95.39 True relocation, inconsistency = 616209 72908188 72921395 72117666 72131133 NC_060933.1 CM021576.2 96.77 True local misassembly 72919421 72933336 72131134 72145249 NC_060933.1 CM021576.2 97.38 True local misassembly 72929527 72935263 72145250 72150976 NC_060933.1 CM021576.2 98.86 True local misassembly 72936433 72943791 72150977 72158330 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = 1444159 71482659 71492245 72167965 72158359 NC_060933.1 CM021576.2 98.85 True relocation, inconsistency = 6268672 65207486 65213986 72174386 72167966 NC_060933.1 CM021576.2 97.95 True local misassembly 65190191 65206736 72191826 72175316 NC_060933.1 CM021576.2 98.38 True relocation, inconsistency = 7111996 72318733 72330805 72191827 72203889 NC_060933.1 CM021576.2 99.55 True indel: indel (> 5bp) 72330958 72331853 72204008 72204903 NC_060933.1 CM021576.2 100.0 True local misassembly 72332703 72333300 72205753 72206350 NC_060933.1 CM021576.2 99.67 True indel: stretch of mismatches 72333576 72334593 72206626 72207643 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 72334599 72336116 72207644 72209161 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 72336117 72337747 72209167 72210797 NC_060933.1 CM021576.2 100.0 True local misassembly 72337835 72339375 72211638 72213178 NC_060933.1 CM021576.2 99.94 True local misassembly 72340531 72342569 72214304 72216342 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 72342575 72343401 72216343 72217169 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72343402 72344492 72217175 72218265 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72344498 72345888 72218266 72219656 NC_060933.1 CM021576.2 99.93 True indel: indel (> 5bp) 72346176 72346927 72219959 72220710 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 72346933 72347881 72220711 72221659 NC_060933.1 CM021576.2 99.68 True indel: indel (<= 5bp) 72347882 72349229 72221665 72223012 NC_060933.1 CM021576.2 100.0 True local misassembly 72349865 72350648 72223653 72224436 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = -9546 72351293 72352059 72234627 72235393 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 72352060 72353020 72235409 72236369 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72353031 72354954 72236370 72238293 NC_060933.1 CM021576.2 99.74 True indel: stretch of mismatches 72355060 72357097 72238399 72240436 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 72357098 72359295 72240442 72242639 NC_060933.1 CM021576.2 99.86 True local misassembly 72359741 72360480 72243290 72244029 NC_060933.1 CM021576.2 99.64 True relocation, inconsistency = -1055129 71305352 71312812 72244030 72251516 NC_060933.1 CM021576.2 98.26 True relocation, inconsistency = 1115918 72428731 72430580 72253361 72251517 NC_060933.1 CM021576.2 98.36 True relocation, inconsistency = 16499 72447985 72448673 72254267 72254955 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72449107 72451019 72255384 72257296 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 72451020 72453448 72257302 72259730 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 72453454 72454566 72259731 72260843 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 72454567 72455140 72260854 72261427 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 72455141 72458436 72261433 72264728 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 72458442 72459039 72264729 72265326 NC_060933.1 CM021576.2 99.83 True indel: stretch of mismatches 72459182 72460203 72265469 72266490 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72460209 72461943 72266491 72268225 NC_060933.1 CM021576.2 99.88 True local misassembly 72466402 72467825 72268805 72270228 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 72467831 72468937 72270229 72271335 NC_060933.1 CM021576.2 99.91 True local misassembly 72469462 72471862 72271875 72274275 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72471868 72475749 72274276 72278157 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 72476254 72477051 72278657 72279454 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72477536 72478760 72279949 72281173 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72478766 72479966 72281174 72282374 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72479967 72481045 72282380 72283458 NC_060933.1 CM021576.2 99.91 True local misassembly 72481619 72482209 72284047 72284637 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72482215 72482921 72284638 72285344 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72483027 72485043 72285490 72287506 NC_060933.1 CM021576.2 99.8 True indel: indel (> 5bp) 72485074 72485657 72287507 72288090 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 72485668 72486602 72288091 72289025 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 72486608 72488709 72289026 72291127 NC_060933.1 CM021576.2 99.76 True indel: indel (<= 5bp) 72488715 72489293 72291128 72291706 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72489788 72491913 72292191 72294316 NC_060933.1 CM021576.2 99.95 True local misassembly 72492842 72493966 72295255 72296379 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72493967 72495952 72296390 72298375 NC_060933.1 CM021576.2 99.9 True indel: indel (> 5bp) 72496275 72499195 72298618 72301538 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 72499206 72505399 72301539 72307732 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 72505701 72507088 72308084 72309471 NC_060933.1 CM021576.2 99.93 True indel: stretch of mismatches 72507282 72508831 72309665 72311214 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72509166 72511301 72311539 72313674 NC_060933.1 CM021576.2 99.91 True local misassembly 72516453 72517398 72314411 72315356 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 72517404 72517953 72315357 72315906 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72517954 72519169 72315912 72317127 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72519416 72520273 72317364 72318221 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72520274 72520942 72318227 72318895 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72520943 72521881 72318901 72319839 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 72521887 72523773 72319840 72321726 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 72523774 72524967 72321732 72322925 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 72525062 72525737 72323015 72323690 NC_060933.1 CM021576.2 99.91 True local misassembly 72526591 72533366 72323691 72330466 NC_060933.1 CM021576.2 98.5 True local misassembly 72531340 72595088 72330467 72394403 NC_060933.1 CM021576.2 98.55 True local misassembly 72591454 72593034 72394404 72395979 NC_060933.1 CM021576.2 99.46 True indel: indel (> 5bp) 72593415 72596189 72396300 72399050 NC_060933.1 CM021576.2 97.92 True local misassembly 72603831 72620279 72403027 72419475 NC_060933.1 CM021576.2 99.54 True local misassembly 72625874 72641645 72424773 72440494 NC_060933.1 CM021576.2 98.21 True indel: indel (> 5bp) 72641845 72649194 72440625 72447969 NC_060933.1 CM021576.2 98.54 True local misassembly 72649952 72680744 72448756 72479569 NC_060933.1 CM021576.2 98.78 True local misassembly 72681814 72701840 72480754 72500770 NC_060933.1 CM021576.2 99.89 True local misassembly 72695133 72695746 72500771 72501375 NC_060933.1 CM021576.2 98.42 True local misassembly 72696868 72697892 72502456 72503480 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72697893 72698684 72503486 72504277 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 72698786 72699524 72504366 72505104 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72699584 72700157 72505154 72505727 NC_060933.1 CM021576.2 99.83 True local misassembly 72706879 72707434 72505728 72506283 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 72707445 72709491 72506284 72508330 NC_060933.1 CM021576.2 99.9 True indel: indel (> 5bp) 72709492 72710059 72508341 72508908 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 72710149 72712057 72508988 72510896 NC_060933.1 CM021576.2 99.95 True indel: stretch of mismatches 72712374 72713424 72511213 72512263 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72713713 72716888 72512572 72515747 NC_060933.1 CM021576.2 99.97 True indel: indel (<= 5bp) 72716894 72718398 72515748 72517252 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 72718399 72719305 72517258 72518164 NC_060933.1 CM021576.2 99.89 True indel: indel (> 5bp) 72719306 72722313 72518175 72521182 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 72722319 72726159 72521183 72525023 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 72726160 72727324 72525029 72526193 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 72727330 72728312 72526194 72527176 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 72728721 72731251 72527600 72530130 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 72731257 72732414 72530131 72531288 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72732420 72737476 72531289 72536345 NC_060933.1 CM021576.2 99.98 True indel: indel (> 5bp) 72737487 72739453 72536346 72538312 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 72739459 72741920 72538313 72540774 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 72741926 72742775 72540775 72541624 NC_060933.1 CM021576.2 98.71 True indel: indel (> 5bp) 72742821 72745121 72541625 72543925 NC_060933.1 CM021576.2 99.13 True indel: indel (> 5bp) 72745232 72745771 72544026 72544565 NC_060933.1 CM021576.2 98.7 True indel: indel (> 5bp) 72745772 72746281 72544581 72545090 NC_060933.1 CM021576.2 99.22 True indel: indel (> 5bp) 72746640 72748206 72545419 72546985 NC_060933.1 CM021576.2 99.36 True indel: stretch of mismatches 72748477 72749287 72547256 72548066 NC_060933.1 CM021576.2 99.63 True indel: indel (<= 5bp) 72749448 72750085 72548232 72548869 NC_060933.1 CM021576.2 99.69 True indel: indel (> 5bp) 72750490 72751592 72549289 72550391 NC_060933.1 CM021576.2 99.91 True indel: stretch of mismatches 72751962 72752499 72550761 72551298 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 72752941 72754567 72551740 72553366 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 72754573 72755255 72553367 72554049 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 72755666 72756590 72554460 72555384 NC_060933.1 CM021576.2 100.0 True local misassembly 72758312 72788972 72557053 72587816 NC_060933.1 CM021576.2 98.46 True local misassembly 72790914 72802677 72589612 72601335 NC_060933.1 CM021576.2 98.6 True local misassembly 72804004 72821328 72602594 72619954 NC_060933.1 CM021576.2 99.14 True local misassembly 72822054 72863414 72620720 72662005 NC_060933.1 CM021576.2 98.55 True relocation, inconsistency = -593839 72269576 72270748 72662006 72663178 NC_060933.1 CM021576.2 98.24 True relocation, inconsistency = 609283 72880032 72889116 72663179 72672278 NC_060933.1 CM021576.2 98.41 True local misassembly 72883190 72904885 72672330 72694125 NC_060933.1 CM021576.2 98.38 True local misassembly 72908357 72920547 72694126 72706376 NC_060933.1 CM021576.2 98.51 True local misassembly 72919421 72920478 72707435 72708492 NC_060933.1 CM021576.2 99.72 True local misassembly 72920479 72921065 72708693 72709279 NC_060933.1 CM021576.2 99.83 True local misassembly 72921815 72923154 72709999 72711338 NC_060933.1 CM021576.2 100.0 True local misassembly 72923729 72927730 72711339 72715505 NC_060933.1 CM021576.2 95.17 True local misassembly 72931890 72949707 72715506 72733327 NC_060933.1 CM021576.2 98.54 True local misassembly 72951120 72999208 72734652 72782400 NC_060933.1 CM021576.2 98.23 True relocation, inconsistency = -7226 72992637 73006786 72783055 72796914 NC_060933.1 CM021576.2 97.08 True local misassembly 73009496 73019462 72796915 72806841 NC_060933.1 CM021576.2 99.02 True local misassembly 73014531 73028749 72806842 72821050 NC_060933.1 CM021576.2 98.73 True local misassembly 73032534 73042877 72821051 72831374 NC_060933.1 CM021576.2 96.16 True local misassembly 73038281 73040472 72831375 72833479 NC_060933.1 CM021576.2 97.47 True relocation, inconsistency = 24653 73065126 73077458 72833480 72845976 NC_060933.1 CM021576.2 97.03 True local misassembly 73082264 73084860 72845977 72848588 NC_060933.1 CM021576.2 98.52 True relocation, inconsistency = -36330 73048749 73075977 72848807 72876209 NC_060933.1 CM021576.2 98.83 True fake: not a misassembly (possible transposable element) 75045264 75046701 72877632 72876210 NC_060933.1 CM021576.2 96.5 True fake: not a misassembly (possible transposable element) 73078173 73097107 72877663 72896632 NC_060933.1 CM021576.2 99.43 True local misassembly 73092440 73095938 72896633 72900126 NC_060933.1 CM021576.2 97.62 True relocation, inconsistency = 13256 73109195 73135697 72900127 72927368 NC_060933.1 CM021576.2 96.72 True relocation, inconsistency = -6273391 66863730 66864312 72928792 72929374 NC_060933.1 CM021576.2 98.97 True indel: indel (> 5bp) 66864422 66864927 72929474 72929979 NC_060933.1 CM021576.2 98.02 True relocation, inconsistency = 6270120 73135381 73146460 72930313 72941357 NC_060933.1 CM021576.2 98.7 True relocation, inconsistency = -17658553 55487908 55490744 72941358 72944184 NC_060933.1 CM021576.2 98.68 True relocation, inconsistency = 17688872 73179617 73185332 72944185 72949865 NC_060933.1 CM021576.2 98.99 True relocation, inconsistency = 9572 73194977 73208050 72949938 72962921 NC_060933.1 CM021576.2 98.71 True relocation, inconsistency = -12039 73196129 73197390 72963039 72964300 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 73197701 73199410 72964606 72966315 NC_060933.1 CM021576.2 99.82 True indel: indel (> 5bp) 73199816 73200778 72966731 72967693 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 73200784 73201362 72967694 72968272 NC_060933.1 CM021576.2 100.0 True local misassembly 73205257 73206079 72969498 72970320 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 73206504 73207700 72970755 72971951 NC_060933.1 CM021576.2 99.75 True indel: indel (> 5bp) 73208251 73210538 72972422 72974709 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 73210539 73212423 72974715 72976599 NC_060933.1 CM021576.2 99.79 True local misassembly 73212714 73213240 72977465 72977991 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73213246 73213824 72977992 72978570 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 73213835 73216801 72978571 72981537 NC_060933.1 CM021576.2 99.9 True indel: indel (> 5bp) 73216802 73218031 72981548 72982777 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 73218037 73218858 72982778 72983599 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73218859 73220495 72983605 72985241 NC_060933.1 CM021576.2 99.76 True indel: indel (<= 5bp) 73220753 73222941 72985504 72987692 NC_060933.1 CM021576.2 99.86 True local misassembly 73223162 73223804 72991324 72991966 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 73223805 73227188 72991972 72995355 NC_060933.1 CM021576.2 99.97 True indel: indel (> 5bp) 73227189 73230726 72995366 72998903 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 73230727 73231382 72998974 72999629 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 73231388 73232084 72999630 73000326 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 73232095 73232955 73000327 73001187 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 73232956 73234541 73001193 73002778 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 73234547 73236260 73002779 73004492 NC_060933.1 CM021576.2 99.94 True indel: stretch of mismatches 73236353 73237603 73004585 73005835 NC_060933.1 CM021576.2 99.76 True indel: indel (> 5bp) 73237604 73241680 73005916 73009992 NC_060933.1 CM021576.2 99.98 True local misassembly 73242182 73242759 73010494 73011071 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 73242840 73243923 73011072 73012155 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 73243929 73244919 73012156 73013146 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 73244925 73248127 73013147 73016349 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73248133 73250143 73016350 73018360 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 73250179 73251166 73018406 73019393 NC_060933.1 CM021576.2 99.8 True indel: indel (<= 5bp) 73251172 73252529 73019394 73020751 NC_060933.1 CM021576.2 99.71 True indel: indel (<= 5bp) 73252530 73253851 73020757 73022078 NC_060933.1 CM021576.2 99.92 True indel: stretch of mismatches 73254121 73255839 73022348 73024066 NC_060933.1 CM021576.2 100.0 True local misassembly 73257631 73259749 73025718 73027836 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 73259750 73260395 73027842 73028487 NC_060933.1 CM021576.2 99.69 True indel: indel (> 5bp) 73260406 73261117 73028488 73029199 NC_060933.1 CM021576.2 99.72 True indel: indel (<= 5bp) 73261118 73261640 73029205 73029727 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73261641 73263501 73029733 73031593 NC_060933.1 CM021576.2 99.95 True indel: indel (> 5bp) 73263582 73265103 73031594 73033115 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 73265365 73267246 73033371 73035252 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73267247 73270259 73035258 73038270 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 73270260 73270975 73038276 73038991 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73271161 73277246 73039182 73045267 NC_060933.1 CM021576.2 99.92 True indel: indel (> 5bp) 73277247 73279574 73045278 73047605 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 73279580 73280338 73047606 73048364 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 73280359 73281571 73048365 73049577 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 73281572 73282426 73049583 73050437 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 73282437 73284646 73050438 73052647 NC_060933.1 CM021576.2 99.73 True indel: indel (<= 5bp) 73284652 73288332 73052648 73056328 NC_060933.1 CM021576.2 99.92 True indel: indel (> 5bp) 73288475 73292915 73056496 73060900 NC_060933.1 CM021576.2 98.34 True local misassembly 73293807 73298499 73061767 73066429 NC_060933.1 CM021576.2 97.83 True indel: indel (> 5bp) 73298855 73329808 73066774 73097557 NC_060933.1 CM021576.2 98.72 True relocation, inconsistency = 9890 73339699 73344093 73097558 73101937 NC_060933.1 CM021576.2 99.07 True relocation, inconsistency = 53024 73397183 73397747 73102003 73102567 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = -37298 73363091 73363822 73105209 73105940 NC_060933.1 CM021576.2 98.77 True fake: not a misassembly (possible transposable element) 73296104 73296999 73106220 73107130 NC_060933.1 CM021576.2 96.99 True fake: not a misassembly (possible transposable element) 73365799 73366785 73107131 73108127 NC_060933.1 CM021576.2 96.03 True relocation, inconsistency = -32098 73334688 73336099 73108128 73109544 NC_060933.1 CM021576.2 95.34 True relocation, inconsistency = 63517 73399813 73401666 73109741 73111579 NC_060933.1 CM021576.2 99.04 True relocation, inconsistency = -15556 73386111 73399823 73111580 73125282 NC_060933.1 CM021576.2 99.46 True local misassembly 73396590 73397747 73125283 73126430 NC_060933.1 CM021576.2 98.66 True relocation, inconsistency = -37293 73363091 73363817 73129067 73129793 NC_060933.1 CM021576.2 98.77 True fake: not a misassembly (possible transposable element) 55701903 55702991 73129794 73130882 NC_060933.1 CM021576.2 98.9 True fake: not a misassembly (possible transposable element) 73365799 73366785 73130964 73131965 NC_060933.1 CM021576.2 95.37 True relocation, inconsistency = -41998 73324788 73326199 73131966 73133387 NC_060933.1 CM021576.2 96.03 True relocation, inconsistency = 73412 73399813 73404196 73133589 73137872 NC_060933.1 CM021576.2 97.84 True local misassembly 73401676 73415799 73137873 73152161 NC_060933.1 CM021576.2 97.9 True local misassembly 73410873 73418976 73152162 73160290 NC_060933.1 CM021576.2 99.47 True local misassembly 73417489 73418327 73160291 73161129 NC_060933.1 CM021576.2 100.0 True local misassembly 73418965 73439496 73164224 73185225 NC_060933.1 CM021576.2 97.35 True relocation, inconsistency = 23937827 49476192 49476883 73190191 73189480 NC_060933.1 CM021576.2 95.93 True relocation, inconsistency = 23997994 73475086 73486612 73190400 73201946 NC_060933.1 CM021576.2 99.32 True local misassembly 73486405 73495024 73202432 73211046 NC_060933.1 CM021576.2 99.17 True local misassembly 73502746 73515674 73215202 73227965 NC_060933.1 CM021576.2 98.04 True local misassembly 73513663 73515465 73229240 73231032 NC_060933.1 CM021576.2 97.79 True fake: not a misassembly (possible transposable element) 53019855 53020568 73231746 73231033 NC_060933.1 CM021576.2 99.22 True fake: not a misassembly (possible transposable element) 73513663 73515465 73232536 73234333 NC_060933.1 CM021576.2 98.73 True fake: not a misassembly (possible transposable element) 61739776 61740448 73235006 73234334 NC_060933.1 CM021576.2 99.03 True fake: not a misassembly (possible transposable element) 73513663 73515374 73235842 73237548 NC_060933.1 CM021576.2 98.72 True local misassembly 73513342 73515560 73237823 73240021 NC_060933.1 CM021576.2 98.83 True fake: not a misassembly (possible transposable element) 61739735 61740348 73240635 73240022 NC_060933.1 CM021576.2 99.05 True fake: not a misassembly (possible transposable element) 73513663 73515465 73241415 73243207 NC_060933.1 CM021576.2 97.96 True fake: not a misassembly (possible transposable element) 61739781 61740453 73243880 73243208 NC_060933.1 CM021576.2 99.15 True fake: not a misassembly (possible transposable element) 73513663 73515674 73244711 73246727 NC_060933.1 CM021576.2 98.17 True relocation, inconsistency = -1908311 71608788 71610405 73248152 73249764 NC_060933.1 CM021576.2 95.73 True relocation, inconsistency = 1892265 73504230 73509438 73251324 73256462 NC_060933.1 CM021576.2 96.55 True relocation, inconsistency = 24021321 49476133 49476883 73263253 73262488 NC_060933.1 CM021576.2 96.34 True relocation, inconsistency = 23998053 73475086 73486612 73263403 73274934 NC_060933.1 CM021576.2 99.23 True local misassembly 73486405 73495024 73275415 73284014 NC_060933.1 CM021576.2 99.22 True relocation, inconsistency = 9817126 63664107 63665128 73289186 73288165 NC_060933.1 CM021576.2 96.61 True relocation, inconsistency = 9843133 73509363 73512468 73290288 73293493 NC_060933.1 CM021576.2 95.94 True relocation, inconsistency = -9839 73502630 73515560 73293494 73306425 NC_060933.1 CM021576.2 99.32 True fake: not a misassembly (possible transposable element) 53019855 53020468 73307039 73306426 NC_060933.1 CM021576.2 99.05 True fake: not a misassembly (possible transposable element) 73513663 73515465 73307824 73309611 NC_060933.1 CM021576.2 98.17 True fake: not a misassembly (possible transposable element) 61739735 61740448 73310325 73309612 NC_060933.1 CM021576.2 99.22 True fake: not a misassembly (possible transposable element) 73513663 73515674 73311115 73313111 NC_060933.1 CM021576.2 97.63 True relocation, inconsistency = -1908321 71608788 71610405 73314546 73316158 NC_060933.1 CM021576.2 95.73 True relocation, inconsistency = 1892265 73504230 73509438 73317718 73322861 NC_060933.1 CM021576.2 96.4 True relocation, inconsistency = -13751624 59759893 59760551 73324940 73325597 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = 10570728 70336570 70337230 73330888 73331548 NC_060933.1 CM021576.2 98.49 True relocation, inconsistency = 3175923 73515432 73538315 73333827 73356585 NC_060933.1 CM021576.2 98.08 True relocation, inconsistency = -13000 73525486 73532217 73356756 73363507 NC_060933.1 CM021576.2 98.89 True relocation, inconsistency = 97806 73632087 73633953 73365571 73367437 NC_060933.1 CM021576.2 99.79 True local misassembly 73636972 73717758 73367648 73448090 NC_060933.1 CM021576.2 98.92 True local misassembly 73713478 73724818 73448091 73459656 NC_060933.1 CM021576.2 95.83 True relocation, inconsistency = 468256 73242427 73245129 73462471 73459749 NC_060933.1 CM021576.2 95.46 True relocation, inconsistency = 20657925 52581168 52582679 73462555 73464071 NC_060933.1 CM021576.2 95.89 True relocation, inconsistency = 21142096 73724776 73735168 73464072 73474439 NC_060933.1 CM021576.2 98.99 True local misassembly 73737071 73740351 73475492 73478792 NC_060933.1 CM021576.2 99.0 True relocation, inconsistency = 16632 73757159 73860702 73478968 73581508 NC_060933.1 CM021576.2 98.18 True local misassembly 73863252 73902768 73583938 73623518 NC_060933.1 CM021576.2 99.14 True local misassembly 73904681 73915323 73625297 73635934 NC_060933.1 CM021576.2 99.77 True indel: indel (> 5bp) 73915645 73923969 73636231 73644485 NC_060933.1 CM021576.2 97.85 True local misassembly 73924740 73940405 73645171 73660891 NC_060933.1 CM021576.2 98.84 True local misassembly 73940951 73978374 73661451 73698909 NC_060933.1 CM021576.2 99.3 True relocation, inconsistency = -21465389 52513164 52514267 73699088 73700191 NC_060933.1 CM021576.2 98.52 True relocation, inconsistency = 7967488 60481756 60484343 73702784 73700192 NC_060933.1 CM021576.2 96.87 True relocation, inconsistency = 13493134 73978357 73987891 73703664 73713188 NC_060933.1 CM021576.2 99.36 True relocation, inconsistency = 9464 73998856 73999581 73714689 73715414 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 73999913 74000595 73715766 73716448 NC_060933.1 CM021576.2 99.71 True relocation, inconsistency = 21147848 52850049 52851419 73718459 73717094 NC_060933.1 CM021576.2 98.4 True relocation, inconsistency = 20035870 72889250 72889817 73720420 73720987 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = 12404481 60481756 60484341 73724005 73721415 NC_060933.1 CM021576.2 96.98 True relocation, inconsistency = 13493136 73978357 73987891 73724885 73734404 NC_060933.1 CM021576.2 99.31 True relocation, inconsistency = 9469 73998856 73999581 73735900 73736625 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 73999913 74000595 73736972 73737654 NC_060933.1 CM021576.2 99.71 True relocation, inconsistency = 12408076 61589821 61591191 73739665 73738300 NC_060933.1 CM021576.2 98.4 True relocation, inconsistency = 11296093 72889250 72889817 73741631 73742198 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = 12404476 60481505 60484343 73745472 73742629 NC_060933.1 CM021576.2 97.07 True relocation, inconsistency = 13509489 73994069 73995048 73745709 73746688 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 73995054 73995756 73746689 73747391 NC_060933.1 CM021576.2 99.43 True indel: indel (<= 5bp) 73995762 73996557 73747392 73748187 NC_060933.1 CM021576.2 99.62 True local misassembly 73997245 73997759 73748870 73749384 NC_060933.1 CM021576.2 99.61 True local misassembly 73998856 73999581 73750506 73751231 NC_060933.1 CM021576.2 99.86 True indel: stretch of mismatches 73999853 74000595 73751503 73752245 NC_060933.1 CM021576.2 99.87 True relocation, inconsistency = 12408016 61589821 61591191 73754246 73752891 NC_060933.1 CM021576.2 97.67 True relocation, inconsistency = 11295993 72889250 72889817 73756312 73756879 NC_060933.1 CM021576.2 99.65 True relocation, inconsistency = -7801918 65088327 65088827 73757307 73757807 NC_060933.1 CM021576.2 98.8 True local misassembly 65089696 65090381 73758656 73759341 NC_060933.1 CM021576.2 98.98 True relocation, inconsistency = 8897090 73987869 73997275 73759739 73769185 NC_060933.1 CM021576.2 98.7 True local misassembly 73998210 74001380 73769186 73772376 NC_060933.1 CM021576.2 99.32 True relocation, inconsistency = 9699 74011146 74012508 73772443 73773805 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 74012509 74013995 73773811 73775297 NC_060933.1 CM021576.2 99.87 True indel: stretch of mismatches 74014328 74015170 73775630 73776472 NC_060933.1 CM021576.2 99.88 True relocation, inconsistency = 7485320 66508144 66528795 73797253 73776685 NC_060933.1 CM021576.2 97.82 True relocation, inconsistency = 7498604 74027400 74031080 73797254 73800934 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 74031086 74031894 73800935 73801743 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74032109 74032963 73802027 73802881 NC_060933.1 CM021576.2 100.0 True local misassembly 74031945 74070596 73802882 73841652 NC_060933.1 CM021576.2 98.75 True relocation, inconsistency = -31855 74038742 74060332 73841653 73863208 NC_060933.1 CM021576.2 99.06 True local misassembly 74058442 74059664 73863370 73864592 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74059670 74060288 73864593 73865211 NC_060933.1 CM021576.2 100.0 True local misassembly 74061252 74063778 73866180 73868706 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 74063779 74066916 73868712 73871849 NC_060933.1 CM021576.2 99.97 True indel: indel (> 5bp) 74066917 74068473 73871860 73873416 NC_060933.1 CM021576.2 99.94 True local misassembly 74069552 74071627 73874500 73876575 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74071717 74072458 73876675 73877416 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74072484 74074111 73877417 73879044 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 74074112 74074763 73879050 73879701 NC_060933.1 CM021576.2 99.54 True relocation, inconsistency = 9681 74085284 74085791 73880541 73881048 NC_060933.1 CM021576.2 100.0 True local misassembly 74085927 74087025 73881049 73882147 NC_060933.1 CM021576.2 99.82 True indel: indel (<= 5bp) 74087026 74087541 73882153 73882668 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74087542 74088268 73882674 73883400 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 74088623 74089248 73883725 73884350 NC_060933.1 CM021576.2 99.68 True indel: indel (> 5bp) 74089259 74090229 73884351 73885321 NC_060933.1 CM021576.2 99.69 True local misassembly 74090390 74091853 73885322 73886785 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 74091859 74093505 73886786 73888432 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 74093506 74094455 73888438 73889387 NC_060933.1 CM021576.2 99.79 True local misassembly 74095855 74096733 73890038 73890906 NC_060933.1 CM021576.2 97.16 True local misassembly 74099850 74100594 73893872 73894616 NC_060933.1 CM021576.2 99.87 True local misassembly 74101104 74101603 73895031 73895530 NC_060933.1 CM021576.2 99.6 True indel: indel (> 5bp) 74101604 74102516 73895541 73896453 NC_060933.1 CM021576.2 99.23 True indel: indel (> 5bp) 74102771 74103363 73896723 73897315 NC_060933.1 CM021576.2 99.66 True indel: stretch of mismatches 74103619 74104186 73897571 73898138 NC_060933.1 CM021576.2 99.12 True local misassembly 74104654 74106101 73898696 73900143 NC_060933.1 CM021576.2 99.72 True indel: indel (<= 5bp) 74106107 74107041 73900144 73901078 NC_060933.1 CM021576.2 100.0 True local misassembly 74109389 74116857 73901135 73908528 NC_060933.1 CM021576.2 98.38 True relocation, inconsistency = 8958156 65149371 65151162 73910390 73908599 NC_060933.1 CM021576.2 97.57 True relocation, inconsistency = -6284627 71430204 71433752 73914109 73910636 NC_060933.1 CM021576.2 95.8 True local misassembly 71425553 71426374 73914951 73914130 NC_060933.1 CM021576.2 97.94 True relocation, inconsistency = 36814 71384947 71387030 73918768 73916660 NC_060933.1 CM021576.2 97.77 True relocation, inconsistency = 2734115 74121893 74122585 73919516 73920208 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 74122756 74125401 73920379 73923024 NC_060933.1 CM021576.2 99.96 True indel: indel (> 5bp) 74125402 74126559 73923035 73924192 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74126560 74128469 73924198 73926107 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 74128589 74129971 73926222 73927604 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = -10990 74130561 74131275 73939184 73939898 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74131281 74132669 73939899 73941287 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74132675 74133654 73941288 73942267 NC_060933.1 CM021576.2 99.9 True indel: stretch of mismatches 74134110 74135494 73942723 73944107 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74135495 74136128 73944113 73944746 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74136538 74137266 73945151 73945879 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74137267 74139875 73945885 73948493 NC_060933.1 CM021576.2 99.81 True indel: indel (<= 5bp) 74139876 74141642 73948499 73950265 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 74141643 74142191 73950271 73950819 NC_060933.1 CM021576.2 100.0 True local misassembly 74142192 74143351 73950960 73952119 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 74143609 74144767 73952367 73953525 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 74144778 74145542 73953526 73954290 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74145543 74146241 73954296 73954994 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 74146687 74147290 73955450 73956053 NC_060933.1 CM021576.2 100.0 True local misassembly 74148041 74149070 73956809 73957838 NC_060933.1 CM021576.2 99.61 True indel: indel (> 5bp) 74149081 74150407 73957839 73959165 NC_060933.1 CM021576.2 99.62 True indel: indel (> 5bp) 74150806 74152106 73959554 73960854 NC_060933.1 CM021576.2 99.92 True local misassembly 74152839 74153398 73961582 73962141 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74153399 74154720 73962147 73963468 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74154726 74155400 73963469 73964143 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 74155401 74155907 73964149 73964655 NC_060933.1 CM021576.2 99.61 True local misassembly 74155908 74156634 73964866 73965592 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74156829 74157686 73965732 73966589 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74157687 74158334 73966595 73967242 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74158686 74160040 73967599 73968953 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 74160041 74160985 73968959 73969903 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74161376 74162089 73970314 73971027 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 74162095 74165526 73971028 73974459 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 74165527 74168152 73974465 73977090 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 74168158 74168841 73977091 73977774 NC_060933.1 CM021576.2 99.85 True local misassembly 74168842 74171269 73978145 73980572 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 74171270 74172640 73980578 73981948 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74172641 74173224 73981954 73982537 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74173294 74174413 73982597 73983716 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74174419 74175108 73983717 73984406 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 74175114 74177428 73984407 73986721 NC_060933.1 CM021576.2 99.96 True indel: stretch of mismatches 74177690 74178700 73986983 73987993 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74178706 74180077 73987994 73989365 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 74180078 74180672 73989371 73989965 NC_060933.1 CM021576.2 100.0 True local misassembly 74181211 74183513 73990499 73992801 NC_060933.1 CM021576.2 99.83 True local misassembly 74182238 74188216 73992974 73998967 NC_060933.1 CM021576.2 99.05 True local misassembly 74186570 74188927 73999428 74001775 NC_060933.1 CM021576.2 99.46 True relocation, inconsistency = 94673 74283601 74292756 74001776 74011001 NC_060933.1 CM021576.2 98.84 True relocation, inconsistency = 9171408 65108536 65109187 74014658 74014007 NC_060933.1 CM021576.2 98.16 True local misassembly 65107149 65107989 74016256 74015416 NC_060933.1 CM021576.2 98.57 True relocation, inconsistency = -7498009 72600883 72602943 74020571 74018471 NC_060933.1 CM021576.2 96.72 True relocation, inconsistency = 1689653 74292732 74305708 74020707 74033728 NC_060933.1 CM021576.2 98.51 True relocation, inconsistency = 9654571 64636974 64638065 74034935 74033824 NC_060933.1 CM021576.2 96.94 True relocation, inconsistency = 9677722 74316495 74317129 74035643 74036277 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74317561 74318726 74036729 74037894 NC_060933.1 CM021576.2 100.0 True local misassembly 74319274 74319964 74039227 74039917 NC_060933.1 CM021576.2 99.28 True indel: indel (<= 5bp) 74319965 74320740 74039923 74040698 NC_060933.1 CM021576.2 99.87 True indel: indel (> 5bp) 74321168 74321828 74041141 74041801 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74322206 74323195 74042204 74043193 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 74323196 74323695 74043199 74043698 NC_060933.1 CM021576.2 99.4 True indel: indel (<= 5bp) 74323701 74324549 74043699 74044547 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74324550 74325239 74044553 74045242 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 74325240 74327726 74045248 74047734 NC_060933.1 CM021576.2 99.92 True local misassembly 74338298 74342797 74051854 74056363 NC_060933.1 CM021576.2 98.7 True local misassembly 74343837 74361202 74056364 74073858 NC_060933.1 CM021576.2 97.67 True relocation, inconsistency = -10935 74350268 74351051 74073859 74074642 NC_060933.1 CM021576.2 99.27 True relocation, inconsistency = 48286 74399338 74406092 74074643 74081347 NC_060933.1 CM021576.2 99.04 True relocation, inconsistency = 10923687 63473010 63473649 74083988 74083349 NC_060933.1 CM021576.2 99.38 True local misassembly 63471961 63472601 74085142 74084502 NC_060933.1 CM021576.2 98.81 True fake: not a misassembly (possible transposable element) 74406234 74407453 74085143 74086392 NC_060933.1 CM021576.2 96.64 True fake: not a misassembly (possible transposable element) 63473010 63473675 74087771 74087106 NC_060933.1 CM021576.2 99.25 True local misassembly 63471942 63472601 74089054 74088395 NC_060933.1 CM021576.2 98.94 True local misassembly 63473145 63473649 74092712 74092208 NC_060933.1 CM021576.2 99.01 True relocation, inconsistency = 10931704 74405969 74414202 74093328 74101586 NC_060933.1 CM021576.2 99.02 True local misassembly 74416486 74444557 74101587 74129827 NC_060933.1 CM021576.2 98.1 True relocation, inconsistency = 16361505 58052246 58054382 74132607 74130426 NC_060933.1 CM021576.2 96.45 True relocation, inconsistency = 16423022 74477405 74482093 74132608 74137301 NC_060933.1 CM021576.2 99.62 True local misassembly 74477936 74501407 74137302 74160888 NC_060933.1 CM021576.2 99.08 True local misassembly 74500056 74512433 74160889 74173371 NC_060933.1 CM021576.2 98.74 True local misassembly 74513059 74538301 74173932 74199442 NC_060933.1 CM021576.2 96.45 True relocation, inconsistency = 7219 74545711 74546288 74199633 74200210 NC_060933.1 CM021576.2 100.0 True local misassembly 74549559 74550339 74200830 74201610 NC_060933.1 CM021576.2 99.1 True indel: indel (> 5bp) 74550512 74551106 74201798 74202392 NC_060933.1 CM021576.2 99.66 True indel: indel (<= 5bp) 74551511 74552215 74202792 74203496 NC_060933.1 CM021576.2 99.86 True indel: indel (<= 5bp) 74552221 74552819 74203497 74204095 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74552825 74553886 74204096 74205157 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 74553887 74555102 74205163 74206378 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74555503 74556257 74206770 74207524 NC_060933.1 CM021576.2 99.6 True local misassembly 74556662 74557427 74208169 74208934 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74557463 74558456 74208935 74209928 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 74558784 74559818 74210241 74211275 NC_060933.1 CM021576.2 100.0 True relocation, inconsistency = 13491 74573310 74597482 74211276 74235414 NC_060933.1 CM021576.2 99.12 True relocation, inconsistency = 13496120 61074313 61074965 74238291 74237639 NC_060933.1 CM021576.2 98.47 True local misassembly 61071738 61072317 74240717 74240138 NC_060933.1 CM021576.2 99.14 True relocation, inconsistency = -54436 61120343 61125951 74246539 74240940 NC_060933.1 CM021576.2 97.89 True local misassembly 61120419 61122736 74249003 74246675 NC_060933.1 CM021576.2 97.27 True relocation, inconsistency = 13478184 74600921 74606004 74249004 74254097 NC_060933.1 CM021576.2 99.67 True local misassembly 74609002 74685649 74254098 74330357 NC_060933.1 CM021576.2 98.7 True local misassembly 74683798 74737315 74330505 74383897 NC_060933.1 CM021576.2 98.81 True local misassembly 74741087 74751894 74384413 74395236 NC_060933.1 CM021576.2 98.8 True local misassembly 74748380 74748975 74395371 74395966 NC_060933.1 CM021576.2 100.0 True local misassembly 74750703 74783391 74395967 74428476 NC_060933.1 CM021576.2 98.52 True local misassembly 74787929 74788436 74428830 74429337 NC_060933.1 CM021576.2 99.21 True relocation, inconsistency = 19837 74811029 74836039 74432093 74457398 NC_060933.1 CM021576.2 97.17 True local misassembly 74838813 74873444 74457399 74492514 NC_060933.1 CM021576.2 97.52 True fake: not a misassembly (possible transposable element) 74892267 74893076 74492515 74493324 NC_060933.1 CM021576.2 98.59 True fake: not a misassembly (possible transposable element) 74873700 74882166 74493325 74501801 NC_060933.1 CM021576.2 99.18 True relocation, inconsistency = 25248 74907445 74912448 74501832 74506845 NC_060933.1 CM021576.2 99.34 True relocation, inconsistency = -477060 74436993 74437796 74508450 74509253 NC_060933.1 CM021576.2 99.0 True relocation, inconsistency = 5766078 68664887 68668385 74515206 74511783 NC_060933.1 CM021576.2 95.9 True relocation, inconsistency = 5563638 63091778 63097566 74524655 74518889 NC_060933.1 CM021576.2 96.14 True relocation, inconsistency = 11821630 74919197 74926799 74524656 74532173 NC_060933.1 CM021576.2 98.92 True relocation, inconsistency = 14489 74941289 74974409 74532174 74565259 NC_060933.1 CM021576.2 99.12 True local misassembly 74975539 74991744 74565260 74581185 NC_060933.1 CM021576.2 97.58 True relocation, inconsistency = 10432 75002177 75002942 74581186 74581951 NC_060933.1 CM021576.2 99.92 True local misassembly 75003716 75004703 74582810 74583797 NC_060933.1 CM021576.2 99.9 True indel: indel (> 5bp) 75004714 75005670 74583798 74584754 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75005671 75006178 74584760 74585267 NC_060933.1 CM021576.2 99.8 True indel: indel (> 5bp) 75006179 75007426 74585278 74586525 NC_060933.1 CM021576.2 99.76 True indel: indel (> 5bp) 75007617 75008808 74586706 74587897 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 75009191 75010834 74588270 74589913 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 75011166 75011915 74590255 74591004 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75011921 75013544 74591005 74592628 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 75013714 75015483 74592798 74594567 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 75015484 75018208 74594573 74597297 NC_060933.1 CM021576.2 99.78 True indel: indel (> 5bp) 75018219 75019002 74597298 74598081 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75019448 75021191 74598512 74600255 NC_060933.1 CM021576.2 99.94 True indel: indel (> 5bp) 75021207 75022514 74600256 74601563 NC_060933.1 CM021576.2 99.85 True local misassembly 75022515 75023462 74601839 74602786 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 75023468 75025948 74602787 74605267 NC_060933.1 CM021576.2 99.96 True indel: indel (<= 5bp) 75025954 75028417 74605268 74607731 NC_060933.1 CM021576.2 99.92 True indel: indel (<= 5bp) 75028423 75030104 74607732 74609413 NC_060933.1 CM021576.2 99.88 True indel: indel (> 5bp) 75030188 75030866 74609512 74610190 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75030872 75034196 74610191 74613515 NC_060933.1 CM021576.2 99.97 True indel: indel (<= 5bp) 75034202 75035005 74613516 74614319 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75035006 75037409 74614325 74616728 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 75037600 75039152 74616929 74618481 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75039153 75041267 74618487 74620601 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75041326 75042174 74620695 74621543 NC_060933.1 CM021576.2 99.88 True indel: indel (<= 5bp) 75042180 75042915 74621544 74622279 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = -9416 75042916 75048328 74631696 74637108 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 75048559 75050837 74637329 74639607 NC_060933.1 CM021576.2 99.91 True indel: indel (> 5bp) 75050848 75051507 74639608 74640267 NC_060933.1 CM021576.2 99.7 True relocation, inconsistency = -9296 75051508 75054802 74649564 74652858 NC_060933.1 CM021576.2 99.88 True indel: stretch of mismatches 75055016 75055903 74653072 74653959 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 75055904 75060013 74653965 74658074 NC_060933.1 CM021576.2 99.93 True relocation, inconsistency = 12502 75072590 75101152 74658149 74686484 NC_060933.1 CM021576.2 98.13 True local misassembly 75108140 75155520 74686485 74733834 NC_060933.1 CM021576.2 98.7 True local misassembly 75159761 75164771 74733835 74738749 NC_060933.1 CM021576.2 98.17 True relocation, inconsistency = -20963 75143809 75151091 74738750 74745927 NC_060933.1 CM021576.2 98.41 True local misassembly 75155352 75182936 74745928 74773502 NC_060933.1 CM021576.2 99.35 True local misassembly 75185456 75186515 74775841 74776900 NC_060933.1 CM021576.2 98.59 True local misassembly 75182884 75224914 74777726 74819567 NC_060933.1 CM021576.2 99.11 True local misassembly 75225553 75270350 74819568 74864160 NC_060933.1 CM021576.2 99.08 True local misassembly 75276675 75277978 74864161 74865464 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = 72177 75350156 75363496 74865465 74878811 NC_060933.1 CM021576.2 99.62 True local misassembly 75365359 75366429 74878812 74879882 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 75366435 75369316 74879883 74882764 NC_060933.1 CM021576.2 99.93 True indel: indel (> 5bp) 75369816 75372087 74883254 74885525 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 75372574 75374668 74886012 74888106 NC_060933.1 CM021576.2 99.95 True indel: indel (<= 5bp) 75374674 75375731 74888107 74889164 NC_060933.1 CM021576.2 100.0 True local misassembly 75375897 75376789 74890910 74891802 NC_060933.1 CM021576.2 99.66 True indel: indel (> 5bp) 75377080 75377913 74892103 74892936 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75377919 75379079 74892937 74894097 NC_060933.1 CM021576.2 99.74 True indel: indel (> 5bp) 75379600 75381460 74894578 74896438 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 75381625 75382771 74896593 74897739 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 75382777 75384090 74897740 74899053 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75384091 75385497 74899059 74900465 NC_060933.1 CM021576.2 99.08 True indel: indel (<= 5bp) 75385498 75387574 74900471 74902547 NC_060933.1 CM021576.2 99.95 True local misassembly 75385718 75386296 74902947 74903525 NC_060933.1 CM021576.2 99.31 True indel: indel (> 5bp) 75386550 75387543 74903794 74904787 NC_060933.1 CM021576.2 99.6 True local misassembly 75388248 75389046 74906206 74907004 NC_060933.1 CM021576.2 99.88 True local misassembly 75385813 75409481 74907005 74930952 NC_060933.1 CM021576.2 97.5 True local misassembly 75411449 75445785 74930953 74965279 NC_060933.1 CM021576.2 98.91 True relocation, inconsistency = 9514 75455300 75470419 74965280 74980454 NC_060933.1 CM021576.2 98.56 True relocation, inconsistency = -4387039 71083496 71084118 74980570 74981192 NC_060933.1 CM021576.2 99.36 True local misassembly 71087792 71088355 74984712 74985275 NC_060933.1 CM021576.2 98.58 True relocation, inconsistency = 4435632 75525447 75525973 74987256 74986735 NC_060933.1 CM021576.2 98.67 True relocation, inconsistency = 10548 75512857 75513393 74989298 74988762 NC_060933.1 CM021576.2 98.51 True local misassembly 75511621 75512176 74990534 74989979 NC_060933.1 CM021576.2 98.74 True local misassembly 75508959 75509462 74993136 74992633 NC_060933.1 CM021576.2 98.81 True relocation, inconsistency = 10787085 64718354 64720385 74996631 74994625 NC_060933.1 CM021576.2 95.38 True relocation, inconsistency = 4041882 60672576 60673360 74999743 75000527 NC_060933.1 CM021576.2 99.11 True local misassembly 60676158 60678611 75003405 75005893 NC_060933.1 CM021576.2 95.42 True relocation, inconsistency = 11745427 72424060 72425893 75007723 75005915 NC_060933.1 CM021576.2 96.8 True local misassembly 72421946 72422663 75009772 75009055 NC_060933.1 CM021576.2 97.91 True relocation, inconsistency = 7854948 64560017 64560619 75016151 75016753 NC_060933.1 CM021576.2 98.67 True local misassembly 64561210 64561986 75017359 75018135 NC_060933.1 CM021576.2 98.2 True local misassembly 64560017 64560724 75022871 75023578 NC_060933.1 CM021576.2 98.59 True indel: indel (> 5bp) 64561210 64561986 75024074 75024850 NC_060933.1 CM021576.2 98.33 True relocation, inconsistency = -4180791 60383324 60384400 75026979 75028055 NC_060933.1 CM021576.2 96.34 True relocation, inconsistency = 11873827 72258855 72259435 75029263 75028683 NC_060933.1 CM021576.2 99.31 True relocation, inconsistency = 18785368 53463907 53465140 75038823 75037610 NC_060933.1 CM021576.2 95.58 True local misassembly 53455389 53463165 75047445 75039745 NC_060933.1 CM021576.2 95.12 True relocation, inconsistency = 8498173 61962727 61965473 75048834 75051585 NC_060933.1 CM021576.2 95.04 True relocation, inconsistency = 13524995 75490600 75491670 75051717 75052787 NC_060933.1 CM021576.2 99.81 True relocation, inconsistency = 19622 75511448 75525635 75052943 75067150 NC_060933.1 CM021576.2 99.18 True local misassembly 75520034 75591108 75067151 75138080 NC_060933.1 CM021576.2 99.04 True local misassembly 75595487 75633852 75138081 75176385 NC_060933.1 CM021576.2 99.08 True relocation, inconsistency = 30590 75664443 75670294 75176386 75182421 NC_060933.1 CM021576.2 97.5 True relocation, inconsistency = -36423 75633872 75649475 75182422 75198050 NC_060933.1 CM021576.2 99.15 True local misassembly 75644066 75645340 75198051 75199310 NC_060933.1 CM021576.2 98.32 True relocation, inconsistency = 17536985 58106526 58107068 75199865 75199323 NC_060933.1 CM021576.2 98.71 True relocation, inconsistency = 4322584 53778764 53779592 75199970 75200793 NC_060933.1 CM021576.2 97.04 True relocation, inconsistency = 21869233 75648826 75678941 75200794 75230899 NC_060933.1 CM021576.2 98.87 True relocation, inconsistency = -36523 75642419 75645371 75230900 75233827 NC_060933.1 CM021576.2 97.4 True relocation, inconsistency = -18467478 57178568 57179554 75234502 75235488 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = -3400895 53778764 53783837 75235593 75240636 NC_060933.1 CM021576.2 97.3 True relocation, inconsistency = 1986063 55770392 55770932 75241128 75241668 NC_060933.1 CM021576.2 99.26 True indel: indel (<= 5bp) 55770933 55771507 75241674 75242248 NC_060933.1 CM021576.2 98.43 True relocation, inconsistency = 19876520 75648646 75652717 75242867 75246963 NC_060933.1 CM021576.2 97.53 True relocation, inconsistency = 23649 75676367 75687954 75246964 75258566 NC_060933.1 CM021576.2 99.01 True local misassembly 75691480 75704766 75258567 75271828 NC_060933.1 CM021576.2 99.56 True local misassembly 75704540 75714919 75272695 75283074 NC_060933.1 CM021576.2 98.97 True local misassembly 75709986 75711729 75283075 75284818 NC_060933.1 CM021576.2 99.77 True indel: indel (> 5bp) 75711730 75713924 75284839 75287033 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 75713935 75715176 75287034 75288275 NC_060933.1 CM021576.2 99.76 True indel: stretch of mismatches 75715440 75716202 75288539 75289301 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 75716699 75717570 75289793 75290664 NC_060933.1 CM021576.2 100.0 True local misassembly 75723958 75725111 75291686 75292839 NC_060933.1 CM021576.2 99.83 True indel: indel (<= 5bp) 75725112 75726490 75292845 75294223 NC_060933.1 CM021576.2 99.85 True indel: indel (<= 5bp) 75726491 75727265 75294229 75295003 NC_060933.1 CM021576.2 99.87 True local misassembly 75724344 75727544 75295254 75298479 NC_060933.1 CM021576.2 98.76 True local misassembly 75730212 75742854 75300078 75312715 NC_060933.1 CM021576.2 99.51 True relocation, inconsistency = -10809 75732046 75732947 75312716 75313586 NC_060933.1 CM021576.2 95.28 True relocation, inconsistency = 26390 75759342 75764805 75313591 75319059 NC_060933.1 CM021576.2 99.43 True local misassembly 75762176 75762899 75319060 75319783 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75762900 75763846 75319789 75320735 NC_060933.1 CM021576.2 99.89 True local misassembly 75764588 75765450 75321487 75322349 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75765456 75766423 75322350 75323317 NC_060933.1 CM021576.2 99.9 True local misassembly 75766424 75768407 75324111 75326094 NC_060933.1 CM021576.2 99.95 True local misassembly 75770409 75778423 75328456 75336450 NC_060933.1 CM021576.2 99.15 True relocation, inconsistency = 7299 75785723 75786296 75336451 75337024 NC_060933.1 CM021576.2 99.89 True indel: indel (<= 5bp) 75786297 75788059 75337030 75338792 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75788061 75789810 75338793 75340542 NC_060933.1 CM021576.2 99.94 True local misassembly 75790376 75791386 75341103 75342113 NC_060933.1 CM021576.2 99.9 True local misassembly 75791527 75792773 75342114 75343360 NC_060933.1 CM021576.2 99.84 True indel: indel (<= 5bp) 75792779 75793747 75343361 75344329 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75793758 75794431 75344330 75345003 NC_060933.1 CM021576.2 100.0 True local misassembly 75794432 75795052 75347246 75347866 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75795430 75796229 75348264 75349063 NC_060933.1 CM021576.2 99.62 True indel: indel (<= 5bp) 75796230 75796970 75349069 75349809 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 75796971 75798445 75349815 75351289 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75798456 75799926 75351290 75352760 NC_060933.1 CM021576.2 99.93 True indel: indel (<= 5bp) 75800274 75800874 75353103 75353703 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75801175 75802373 75353989 75355187 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75802384 75805365 75355188 75358169 NC_060933.1 CM021576.2 99.9 True indel: indel (<= 5bp) 75805366 75807149 75358175 75359958 NC_060933.1 CM021576.2 99.78 True indel: indel (> 5bp) 75807424 75809306 75360243 75362125 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 75809432 75810058 75362261 75362887 NC_060933.1 CM021576.2 100.0 True indel: stretch of mismatches 75810116 75810738 75362945 75363567 NC_060933.1 CM021576.2 100.0 True indel: indel (<= 5bp) 75810744 75813057 75363568 75365881 NC_060933.1 CM021576.2 99.87 True indel: indel (<= 5bp) 75813063 75814283 75365882 75367102 NC_060933.1 CM021576.2 99.92 True local misassembly 75814624 75816729 75368372 75370477 NC_060933.1 CM021576.2 99.95 True indel: indel (> 5bp) 75817125 75819065 75370858 75372798 NC_060933.1 CM021576.2 99.74 True indel: indel (<= 5bp) 75819066 75822436 75372804 75376174 NC_060933.1 CM021576.2 99.94 True indel: indel (<= 5bp) 75822437 75823436 75376180 75377179 NC_060933.1 CM021576.2 100.0 True indel: indel (> 5bp) 75823815 75824751 75377578 75378514 NC_060933.1 CM021576.2 99.79 True indel: indel (<= 5bp) 75824752 75825844 75378516 75379608 NC_060933.1 CM021576.2 99.91 True indel: indel (<= 5bp) 75825845 75827990 75379614 75381759 NC_060933.1 CM021576.2 99.91 True local misassembly 75828011 75832664 75382603 75387256 NC_060933.1 CM021576.2 99.06 True fake: not a misassembly (possible transposable element) 58559984 58562196 75388285 75390491 NC_060933.1 CM021576.2 96.46 True fake: not a misassembly (possible transposable element) 75832610 75856397 75391293 75414716 NC_060933.1 CM021576.2 97.46 True local misassembly 75857857 75982891 75414841 75539437 NC_060933.1 CM021576.2 98.95 True local misassembly 75987245 75988620 75543620 75544975 NC_060933.1 CM021576.2 96.51 True local misassembly 75992195 76038757 75548508 75594735 NC_060933.1 CM021576.2 97.11 True local misassembly 76046617 76061391 75602237 75617006 NC_060933.1 CM021576.2 99.85 True relocation, inconsistency = -8277635 67785342 67787270 75618592 75620540 NC_060933.1 CM021576.2 96.34 True relocation, inconsistency = 8329939 76119615 76120527 75622946 75623858 NC_060933.1 CM021576.2 97.15 True relocation, inconsistency = -52285 76068243 76164876 75623859 75720434 NC_060933.1 CM021576.2 99.16 True fake: not a misassembly (possible transposable element) 76112576 76113279 75722783 75723486 NC_060933.1 CM021576.2 99.57 True fake: not a misassembly (possible transposable element) 76168621 76220843 75724108 75776206 NC_060933.1 CM021576.2 99.1 True indel: indel (> 5bp) 76221307 76224992 75776690 75780360 NC_060933.1 CM021576.2 98.62 True relocation, inconsistency = -30188 76194805 76195379 75780361 75780935 NC_060933.1 CM021576.2 99.1 True local misassembly 76195738 76196271 75783308 75783842 NC_060933.1 CM021576.2 97.15 True relocation, inconsistency = 19270 76215542 76217677 75783843 75785923 NC_060933.1 CM021576.2 95.79 True relocation, inconsistency = 13040 76231309 76253866 75786515 75809132 NC_060933.1 CM021576.2 99.17 True relocation, inconsistency = 28344 76282335 76286256 75809257 75813173 NC_060933.1 CM021576.2 98.83 True indel: indel (> 5bp) 76286417 76287971 75813386 75814960 NC_060933.1 CM021576.2 96.71 True relocation, inconsistency = -28364 76259608 76278534 75814961 75833877 NC_060933.1 CM021576.2 99.59 True fake: not a misassembly (possible transposable element) 76251417 76253929 75835072 75837589 NC_060933.1 CM021576.2 98.5 True fake: not a misassembly (possible transposable element) 76282335 76305568 75837651 75860679 NC_060933.1 CM021576.2 98.38 True local misassembly 76306821 76335140 75861955 75890319 NC_060933.1 CM021576.2 99.49 True relocation, inconsistency = 11976 76347245 76365847 75890448 75909090 NC_060933.1 CM021576.2 98.61 True local misassembly 76371688 76444850 75909091 75982103 NC_060933.1 CM021576.2 98.81 True fake: not a misassembly (possible transposable element) 76509634 76511172 75983788 75985311 NC_060933.1 CM021576.2 98.57 True fake: not a misassembly (possible transposable element) 76450594 76481711 75987655 76018717 NC_060933.1 CM021576.2 99.28 True fake: not a misassembly (possible transposable element) 76453246 76453796 76020889 76021439 NC_060933.1 CM021576.2 98.73 True fake: not a misassembly (possible transposable element) 76486730 76519690 76023720 76056659 NC_060933.1 CM021576.2 99.48 True fake: not a misassembly (possible transposable element) 76473032 76477937 76056962 76061907 NC_060933.1 CM021576.2 97.83 True fake: not a misassembly (possible transposable element) 76527035 76560033 76063829 76096822 NC_060933.1 CM021576.2 99.43 True relocation, inconsistency = -7374 76552663 77814910 76096826 77358882 NC_060933.1 CM021576.2 99.94 True relocation, inconsistency = 12415 77827326 79716935 77358883 79248447 NC_060933.1 CM021576.2 99.86 True relocation, inconsistency = -39403720 40313216 40540573 79248448 79475833 NC_060933.1 CM021576.2 99.31 True relocation, inconsistency = 37026998 77569230 77604312 79511199 79475834 NC_060933.1 CM021576.2 99.25 True relocation, inconsistency = 2376955 79981268 80305289 79511200 79835070 NC_060933.1 CM021576.2 99.36 True local misassembly 80305296 80447657 79835944 79978288 NC_060933.1 CM021576.2 99.84 True local misassembly 80447644 87918952 79979127 87455984 NC_060933.1 CM021576.2 99.74 True local misassembly 87921209 90840174 87456047 90378186 NC_060933.1 CM021576.2 99.67 True indel: indel (> 5bp) 90840324 92811212 90378309 92349433 NC_060933.1 CM021576.2 99.78 True relocation, inconsistency = 81577 92893698 92898408 92350342 92355039 NC_060933.1 CM021576.2 96.63 True translocation 4202558 4203430 92355154 92356028 NC_060930.1 CM021576.2 95.66 True translocation 92812116 93505294 92356353 93048884 NC_060933.1 CM021576.2 99.55 True local misassembly 93508061 95629371 93048885 95169118 NC_060933.1 CM021576.2 99.79 True local misassembly 95629528 98594266 95169396 98133231 NC_060933.1 CM021576.2 99.78 True indel: indel (<= 5bp) 98594531 98690896 98133495 98229861 NC_060933.1 CM021576.2 99.75 True local misassembly 98692286 98744499 98229953 98282203 NC_060933.1 CM021576.2 99.55 True local misassembly 98744732 103050084 98282304 102598497 NC_060933.1 CM021576.2 99.48 True local misassembly 103050320 106480916 102598635 106028786 NC_060933.1 CM021576.2 99.72 True local misassembly 106482374 109427345 106029426 108973428 NC_060933.1 CM021576.2 99.81 True local misassembly 109428068 112272205 108974595 111815601 NC_060933.1 CM021576.2 99.71 True local misassembly 112272580 112561378 111815790 112104680 NC_060933.1 CM021576.2 99.84 True indel: indel (> 5bp) 112561434 113666830 112104702 113209884 NC_060933.1 CM021576.2 99.81 True local misassembly 113670036 115793352 113211605 115334393 NC_060933.1 CM021576.2 99.75 True indel: indel (> 5bp) 115793659 116025788 115334626 115566792 NC_060933.1 CM021576.2 99.83 True indel: indel (> 5bp) 116026076 116323946 115567137 115865064 NC_060933.1 CM021576.2 99.74 True local misassembly 116324502 116470747 115865065 116011304 NC_060933.1 CM021576.2 99.72 True local misassembly 116470069 121571669 116011305 121118377 NC_060933.1 CM021576.2 99.6 True indel: stretch of mismatches 121571691 122589335 121118399 122135782 NC_060933.1 CM021576.2 99.7 True indel: stretch of mismatches 122589336 122859664 122135783 122406026 NC_060933.1 CM021576.2 99.64 True indel: indel (> 5bp) 122859731 124973536 122406118 124520467 NC_060933.1 CM021576.2 99.7 True indel: stretch of mismatches 124973537 125231496 124520468 124778351 NC_060933.1 CM021576.2 99.74 True local misassembly 125236941 126150038 124778352 125691872 NC_060933.1 CM021576.2 99.68 True indel: indel (> 5bp) 126150269 126527031 125692155 126068791 NC_060933.1 CM021576.2 99.77 True local misassembly 126521445 126523169 126069978 126071702 NC_060933.1 CM021576.2 98.67 True indel: indel (<= 5bp) 126523240 126523969 126071776 126072508 NC_060933.1 CM021576.2 96.04 True indel: stretch of mismatches 126524059 130828323 126072598 130377352 NC_060933.1 CM021576.2 99.81 True local misassembly 130828128 139081938 130381572 138629788 NC_060933.1 CM021576.2 99.81 True local misassembly 139082601 140346755 138630569 139894853 NC_060933.1 CM021576.2 99.86 True indel: indel (> 5bp) 140346834 140644467 139894957 140192509 NC_060933.1 CM021576.2 99.72 True local misassembly 140645126 143164455 140193038 142715746 NC_060933.1 CM021576.2 99.68 True local misassembly 143164655 143180092 142716171 142731566 NC_060933.1 CM021576.2 99.44 True local misassembly 143180001 145884277 142731572 145438299 NC_060933.1 CM021576.2 99.57 True local misassembly 145884559 145971170 145439440 145526446 NC_060933.1 CM021576.2 99.25 True local misassembly 145972282 146229150 145527377 145784870 NC_060933.1 CM021576.2 98.74 True local misassembly 146229320 146343959 145784920 145899600 NC_060933.1 CM021576.2 99.45 True indel: indel (<= 5bp) 146344155 146390656 145899797 145946314 NC_060933.1 CM021576.2 99.74 True local misassembly 146391034 146741739 145946834 146297759 NC_060933.1 CM021576.2 99.42 True indel: indel (> 5bp) 146741824 146874835 146297834 146433927 NC_060933.1 CM021576.2 97.22 True local misassembly 146874915 147348271 146434616 146905962 NC_060933.1 CM021576.2 99.12 True indel: indel (> 5bp) 147348362 147419885 146906080 146977631 NC_060933.1 CM021576.2 99.77 True local misassembly 147419997 147574598 146977632 147132131 NC_060933.1 CM021576.2 99.27 True local misassembly 147577713 147777228 147132132 147331705 NC_060933.1 CM021576.2 99.34 True indel: indel (<= 5bp) 147777355 147953607 147331829 147507809 NC_060933.1 CM021576.2 99.68 True indel: indel (> 5bp) 147953757 149604737 147507951 149157124 NC_060933.1 CM021576.2 99.3 True local misassembly 149607057 149752944 149160053 149305981 NC_060933.1 CM021576.2 99.44 True local misassembly 149754867 150077199 149310011 149633721 NC_060933.1 CM021576.2 98.57 True indel: indel (> 5bp) 150077330 150614887 149633930 150152091 NC_060933.1 CM021576.2 96.11 True indel: indel (> 5bp) 150614952 150617247 150152162 150154455 NC_060933.1 CM021576.2 99.52 True CONTIG CM021576.2 150154455 misassembled 1710 471096 1723 471070 NC_060934.1 CM021577.2 99.24 True local misassembly 473084 511153 472598 510811 NC_060934.1 CM021577.2 99.16 True local misassembly 512602 604806 512429 604821 NC_060934.1 CM021577.2 99.26 True indel: indel (> 5bp) 605131 734378 605156 731925 NC_060934.1 CM021577.2 97.86 True indel: indel (> 5bp) 734449 778683 731952 774565 NC_060934.1 CM021577.2 95.49 True indel: indel (> 5bp) 778754 1233775 774566 1229423 NC_060934.1 CM021577.2 99.05 True local misassembly 1235030 3062151 1230412 3056742 NC_060934.1 CM021577.2 99.21 True local misassembly 3062414 3107571 3057228 3102383 NC_060934.1 CM021577.2 98.13 True local misassembly 3107840 3132153 3102929 3127116 NC_060934.1 CM021577.2 98.89 True indel: stretch of mismatches 3132181 3316225 3127144 3311357 NC_060934.1 CM021577.2 99.51 True local misassembly 3316460 5032582 3311792 5029791 NC_060934.1 CM021577.2 99.55 True indel: indel (> 5bp) 5032741 5169566 5029916 5166826 NC_060934.1 CM021577.2 99.51 True local misassembly 5170881 5371761 5166827 5367751 NC_060934.1 CM021577.2 99.82 True local misassembly 5373529 6646948 5368522 6637362 NC_060934.1 CM021577.2 98.88 True indel: indel (> 5bp) 6647137 7567661 6637471 7558330 NC_060934.1 CM021577.2 99.7 True indel: indel (> 5bp) 7567770 7629512 7558486 7620310 NC_060934.1 CM021577.2 99.71 True local misassembly 7630177 7682449 7621107 7673337 NC_060934.1 CM021577.2 99.32 True local misassembly 7682747 8364018 7673737 8353467 NC_060934.1 CM021577.2 99.36 True indel: indel (> 5bp) 8364416 8423606 8353940 8413131 NC_060934.1 CM021577.2 99.65 True indel: indel (<= 5bp) 8423700 8987552 8413228 8979909 NC_060934.1 CM021577.2 99.17 True local misassembly 8987907 19257039 8980468 19240793 NC_060934.1 CM021577.2 99.67 True indel: indel (> 5bp) 19257142 19727710 19240924 19711410 NC_060934.1 CM021577.2 99.91 True local misassembly 19727339 20564514 19712495 20549506 NC_060934.1 CM021577.2 99.61 True local misassembly 20564789 23607595 20550261 23596975 NC_060934.1 CM021577.2 99.68 True indel: indel (<= 5bp) 23607729 23810046 23597108 23799454 NC_060934.1 CM021577.2 99.71 True local misassembly 23810498 26965370 23799676 26947823 NC_060934.1 CM021577.2 99.51 True local misassembly 26969256 26970474 26947824 26949042 NC_060934.1 CM021577.2 99.75 True local misassembly 26965795 27342323 26949093 27326081 NC_060934.1 CM021577.2 99.67 True local misassembly 27342358 27346910 27327376 27331916 NC_060934.1 CM021577.2 99.19 True relocation, inconsistency = -47286 27346944 27385771 27379236 27418063 NC_060934.1 CM021577.2 99.75 True local misassembly 27385887 29164746 27418569 29197346 NC_060934.1 CM021577.2 99.57 True indel: indel (> 5bp) 29164799 29461570 29197416 29494891 NC_060934.1 CM021577.2 99.5 True indel: indel (> 5bp) 29461575 30708371 29494932 30741765 NC_060934.1 CM021577.2 99.73 True local misassembly 30708399 31716886 30741906 31750188 NC_060934.1 CM021577.2 99.86 True local misassembly 31718503 32060766 31751244 32095848 NC_060934.1 CM021577.2 98.87 True indel: stretch of mismatches 32060863 36042169 32095945 36078039 NC_060934.1 CM021577.2 99.73 True local misassembly 36042697 36043768 36078570 36079641 NC_060934.1 CM021577.2 96.92 True indel: indel (<= 5bp) 36044244 36774223 36080114 36809678 NC_060934.1 CM021577.2 99.67 True indel: indel (> 5bp) 36774396 38156714 36809810 38191971 NC_060934.1 CM021577.2 99.78 True indel: indel (> 5bp) 38156785 38582590 38192104 38618629 NC_060934.1 CM021577.2 98.91 True local misassembly 38586923 38587444 38622996 38623527 NC_060934.1 CM021577.2 95.68 True indel: indel (> 5bp) 38587822 38588380 38623921 38624479 NC_060934.1 CM021577.2 96.42 True local misassembly 38592378 38592882 38629001 38629505 NC_060934.1 CM021577.2 96.63 True local misassembly 38592119 38592814 38631692 38632382 NC_060934.1 CM021577.2 96.12 True local misassembly 38601035 38602056 38637810 38638831 NC_060934.1 CM021577.2 96.97 True local misassembly 38600238 38601537 38641229 38642528 NC_060934.1 CM021577.2 98.92 True local misassembly 38608011 38608729 38643932 38644650 NC_060934.1 CM021577.2 97.22 True local misassembly 38612067 38612607 38648059 38648599 NC_060934.1 CM021577.2 97.23 True indel: indel (> 5bp) 38612818 38613430 38648736 38649348 NC_060934.1 CM021577.2 97.88 True indel: indel (> 5bp) 38613497 38614344 38649400 38650247 NC_060934.1 CM021577.2 99.29 True local misassembly 38610125 38629902 38650253 38669831 NC_060934.1 CM021577.2 96.07 True relocation, inconsistency = -8937 38629890 38652841 38678756 38701723 NC_060934.1 CM021577.2 98.01 True local misassembly 38652821 38870016 38705438 38922462 NC_060934.1 CM021577.2 99.17 True local misassembly 38869093 38933487 38922463 38986765 NC_060934.1 CM021577.2 98.08 True indel: indel (<= 5bp) 38933555 39326193 38986838 39379229 NC_060934.1 CM021577.2 99.49 True relocation, inconsistency = 10775 39336970 39409119 39379231 39451389 NC_060934.1 CM021577.2 99.84 True relocation, inconsistency = 19938 39429058 39445208 39451390 39467540 NC_060934.1 CM021577.2 99.79 True relocation, inconsistency = -10429 39434780 39445089 39467541 39477850 NC_060934.1 CM021577.2 99.76 True relocation, inconsistency = -10429 39434661 39451770 39477851 39494961 NC_060934.1 CM021577.2 99.85 True local misassembly 39450797 39576178 39495362 39620754 NC_060934.1 CM021577.2 99.79 True local misassembly 39576171 39637701 39621089 39682280 NC_060934.1 CM021577.2 99.15 True indel: indel (<= 5bp) 39637765 39646744 39682346 39691328 NC_060934.1 CM021577.2 97.77 True local misassembly 39641583 39644181 39691596 39694193 NC_060934.1 CM021577.2 97.94 True local misassembly 39649613 39680376 39694194 39724958 NC_060934.1 CM021577.2 99.41 True indel: stretch of mismatches 39680525 39684356 39725107 39728937 NC_060934.1 CM021577.2 98.12 True indel: indel (<= 5bp) 39684792 39695483 39729375 39740067 NC_060934.1 CM021577.2 99.06 True relocation, inconsistency = 1828173 41523891 41527645 39740302 39744055 NC_060934.1 CM021577.2 97.79 True relocation, inconsistency = -1768788 39759600 39760233 39744798 39745431 NC_060934.1 CM021577.2 99.37 True relocation, inconsistency = -66856 39694781 39698706 39746835 39750758 NC_060934.1 CM021577.2 98.01 True local misassembly 39700977 39704722 39753029 39756774 NC_060934.1 CM021577.2 98.21 True relocation, inconsistency = 7466 39713449 39721315 39758035 39765902 NC_060934.1 CM021577.2 98.72 True local misassembly 39721937 39731540 39766520 39776123 NC_060934.1 CM021577.2 99.76 True relocation, inconsistency = 1672077 41403859 41406229 39776365 39778734 NC_060934.1 CM021577.2 97.01 True relocation, inconsistency = -1691764 39714527 39717887 39778796 39782156 NC_060934.1 CM021577.2 97.86 True indel: indel (<= 5bp) 39718231 39721959 39782501 39786227 NC_060934.1 CM021577.2 97.88 True relocation, inconsistency = 1840056 41562389 41563349 39786601 39787561 NC_060934.1 CM021577.2 98.19 True relocation, inconsistency = -1820373 39742977 39745096 39787562 39789681 NC_060934.1 CM021577.2 98.15 True local misassembly 39741702 39745348 39789682 39793327 NC_060934.1 CM021577.2 97.64 True relocation, inconsistency = 1866540 41611894 41615645 39793333 39797087 NC_060934.1 CM021577.2 98.16 True relocation, inconsistency = -1875023 39740623 39742265 39797088 39798730 NC_060934.1 CM021577.2 98.05 True relocation, inconsistency = 11878 39755069 39827733 39799656 39872319 NC_060934.1 CM021577.2 99.94 True relocation, inconsistency = -105262 39724275 39725802 39874123 39875651 NC_060934.1 CM021577.2 97.58 True relocation, inconsistency = 1186059 40916822 40919524 39880612 39883317 NC_060934.1 CM021577.2 98.37 True relocation, inconsistency = 412205 41333460 41335463 39885048 39887051 NC_060934.1 CM021577.2 98.55 True relocation, inconsistency = -1492988 39844135 39846795 39888711 39891371 NC_060934.1 CM021577.2 99.14 True fake: not a misassembly (possible transposable element) 41390137 41393185 39892514 39895563 NC_060934.1 CM021577.2 98.2 True fake: not a misassembly (possible transposable element) 39851671 39873107 39896244 39917680 NC_060934.1 CM021577.2 99.88 True relocation, inconsistency = 1782301 41656107 41656802 39918379 39919074 NC_060934.1 CM021577.2 97.85 True relocation, inconsistency = -825567 40835539 40836739 39923378 39924579 NC_060934.1 CM021577.2 96.59 True relocation, inconsistency = 510449 41349723 41353817 39927114 39931208 NC_060934.1 CM021577.2 98.75 True relocation, inconsistency = 278800 41632618 41633240 39931209 39931831 NC_060934.1 CM021577.2 98.34 True local misassembly 41630523 41634087 39932847 39936413 NC_060934.1 CM021577.2 97.79 True relocation, inconsistency = -1896746 39747356 39748491 39946428 39947563 NC_060934.1 CM021577.2 97.04 True relocation, inconsistency = 136507 39884999 39889741 39947564 39952306 NC_060934.1 CM021577.2 99.24 True relocation, inconsistency = 1461075 41350817 41353117 39952307 39954606 NC_060934.1 CM021577.2 98.8 True relocation, inconsistency = 215664 41568782 41572897 39954607 39958722 NC_060934.1 CM021577.2 98.65 True local misassembly 41568146 41572949 39958723 39963526 NC_060934.1 CM021577.2 98.26 True relocation, inconsistency = -219060 41353890 41360606 39963527 39970252 NC_060934.1 CM021577.2 98.14 True local misassembly 41355855 41359463 39970253 39973864 NC_060934.1 CM021577.2 98.08 True relocation, inconsistency = -1430186 39929278 39942012 39973865 39986601 NC_060934.1 CM021577.2 99.54 True relocation, inconsistency = 1620055 41562634 41565483 39987168 39990016 NC_060934.1 CM021577.2 98.56 True relocation, inconsistency = -1877053 39688431 39689202 39990017 39990789 NC_060934.1 CM021577.2 98.6 True local misassembly 39685957 39688016 39992974 39995033 NC_060934.1 CM021577.2 98.74 True relocation, inconsistency = -10184 39682562 39684356 39999763 40001556 NC_060934.1 CM021577.2 98.16 True relocation, inconsistency = 1225767 40916822 40919524 40008255 40010960 NC_060934.1 CM021577.2 98.45 True relocation, inconsistency = 648233 41568146 41572564 40011349 40015767 NC_060934.1 CM021577.2 98.73 True relocation, inconsistency = -1829544 39743115 39745348 40015862 40018094 NC_060934.1 CM021577.2 98.03 True relocation, inconsistency = 1894707 41640060 41643190 40018099 40021229 NC_060934.1 CM021577.2 98.56 True relocation, inconsistency = -215504 41427687 41429861 40021230 40023404 NC_060934.1 CM021577.2 98.65 True local misassembly 41427486 41428332 40023405 40024251 NC_060934.1 CM021577.2 98.85 True relocation, inconsistency = 139813 41568146 41574627 40024252 40030733 NC_060934.1 CM021577.2 98.81 True relocation, inconsistency = -1891989 39688004 39689202 40036099 40037298 NC_060934.1 CM021577.2 98.0 True relocation, inconsistency = 1876715 41568146 41570521 40039527 40041902 NC_060934.1 CM021577.2 98.67 True local misassembly 41568146 41575226 40041903 40048983 NC_060934.1 CM021577.2 98.7 True relocation, inconsistency = 72978 41652280 41654651 40053059 40055430 NC_060934.1 CM021577.2 99.28 True relocation, inconsistency = -324278 41332498 41335463 40057555 40060520 NC_060934.1 CM021577.2 98.99 True relocation, inconsistency = 57017 41397388 41399369 40065428 40067409 NC_060934.1 CM021577.2 98.28 True relocation, inconsistency = 230268 41630983 41633801 40068755 40071575 NC_060934.1 CM021577.2 97.66 True relocation, inconsistency = -799429 40834591 40836289 40071794 40073492 NC_060934.1 CM021577.2 97.35 True indel: stretch of mismatches 40836303 40838933 40073506 40076136 NC_060934.1 CM021577.2 98.08 True relocation, inconsistency = 493480 41332414 41335463 40076137 40079186 NC_060934.1 CM021577.2 98.26 True relocation, inconsistency = 83323 41420190 41423561 40080590 40083964 NC_060934.1 CM021577.2 98.55 True relocation, inconsistency = -1674792 39749086 39753459 40084281 40088655 NC_060934.1 CM021577.2 98.77 True relocation, inconsistency = -105557 39647903 39649320 40088656 40090073 NC_060934.1 CM021577.2 98.35 True relocation, inconsistency = 1918466 41568146 41575226 40090433 40097513 NC_060934.1 CM021577.2 98.66 True relocation, inconsistency = -157798 41417429 41418186 40097514 40098271 NC_060934.1 CM021577.2 98.66 True relocation, inconsistency = -1689046 39729744 39733203 40098875 40102335 NC_060934.1 CM021577.2 98.38 True fake: not a misassembly (possible transposable element) 41480242 41481971 40102647 40104377 NC_060934.1 CM021577.2 98.61 True fake: not a misassembly (possible transposable element) 39729744 39732872 40104980 40108109 NC_060934.1 CM021577.2 98.56 True relocation, inconsistency = 1687349 41423581 41424895 40111469 40112783 NC_060934.1 CM021577.2 98.71 True fake: not a misassembly (possible transposable element) 41640399 41643815 40112784 40116200 NC_060934.1 CM021577.2 98.27 True fake: not a misassembly (possible transposable element) 41423581 41424301 40117579 40118299 NC_060934.1 CM021577.2 98.5 True relocation, inconsistency = 145583 41569885 41573291 40118300 40121706 NC_060934.1 CM021577.2 98.44 True relocation, inconsistency = -124553 41449966 41452475 40122934 40125435 NC_060934.1 CM021577.2 97.85 True relocation, inconsistency = 71595 41524071 41525947 40125436 40127312 NC_060934.1 CM021577.2 97.98 True indel: indel (<= 5bp) 41525949 41526702 40127313 40128066 NC_060934.1 CM021577.2 97.35 True local misassembly 41526703 41527984 40128402 40129683 NC_060934.1 CM021577.2 97.66 True indel: indel (<= 5bp) 41527986 41528726 40129684 40130424 NC_060934.1 CM021577.2 98.52 True local misassembly 41528727 41530262 40130760 40132295 NC_060934.1 CM021577.2 98.05 True indel: indel (<= 5bp) 41530263 41531875 40132298 40133910 NC_060934.1 CM021577.2 98.95 True relocation, inconsistency = 31231 41564243 41567838 40135047 40138641 NC_060934.1 CM021577.2 98.67 True relocation, inconsistency = -1894364 39673475 39675030 40138642 40140198 NC_060934.1 CM021577.2 98.63 True relocation, inconsistency = 1952408 41630523 41631576 40143283 40144336 NC_060934.1 CM021577.2 98.38 True relocation, inconsistency = 12216 41643793 41647031 40144337 40147575 NC_060934.1 CM021577.2 99.04 True relocation, inconsistency = -439665 41211559 41212273 40151768 40152482 NC_060934.1 CM021577.2 98.96 True relocation, inconsistency = 188529 41400803 41404208 40152483 40155888 NC_060934.1 CM021577.2 99.0 True relocation, inconsistency = -1723331 39682562 39684523 40157573 40159533 NC_060934.1 CM021577.2 98.32 True relocation, inconsistency = 1941887 41630523 41633240 40163646 40166363 NC_060934.1 CM021577.2 98.45 True relocation, inconsistency = -10861 41630523 41631576 40174507 40175560 NC_060934.1 CM021577.2 98.34 True relocation, inconsistency = -68906 41562671 41565949 40175561 40178839 NC_060934.1 CM021577.2 98.84 True relocation, inconsistency = 61778 41630523 41633240 40181635 40184352 NC_060934.1 CM021577.2 98.38 True local misassembly 41630983 41634087 40184471 40187577 NC_060934.1 CM021577.2 97.62 True local misassembly 41630983 41633368 40189223 40191608 NC_060934.1 CM021577.2 98.11 True relocation, inconsistency = -281177 41354474 41359678 40193891 40199095 NC_060934.1 CM021577.2 98.42 True relocation, inconsistency = -1632199 39728130 39729325 40199746 40200940 NC_060934.1 CM021577.2 98.24 True relocation, inconsistency = 1890967 41636628 41638798 40217276 40219446 NC_060934.1 CM021577.2 98.57 True relocation, inconsistency = -31906 41630983 41633240 40243537 40245794 NC_060934.1 CM021577.2 98.23 True relocation, inconsistency = -71621 41568146 41573291 40252321 40257466 NC_060934.1 CM021577.2 98.74 True relocation, inconsistency = 51253 41630523 41631260 40263445 40264182 NC_060934.1 CM021577.2 98.37 True relocation, inconsistency = -549640 41081683 41082978 40264245 40265541 NC_060934.1 CM021577.2 98.69 True relocation, inconsistency = 310206 41393926 41394977 40266283 40267334 NC_060934.1 CM021577.2 97.9 True relocation, inconsistency = -1172260 40222718 40240848 40267335 40285468 NC_060934.1 CM021577.2 99.67 True relocation, inconsistency = 1391330 41632179 41634087 40285469 40287380 NC_060934.1 CM021577.2 97.76 True relocation, inconsistency = -721207 40916822 40919479 40291322 40293981 NC_060934.1 CM021577.2 98.23 True relocation, inconsistency = 430533 41353795 41354744 40297764 40298713 NC_060934.1 CM021577.2 98.21 True relocation, inconsistency = -1100647 40254098 40261467 40298714 40306082 NC_060934.1 CM021577.2 99.42 True relocation, inconsistency = 1369944 41631412 41632001 40306083 40306672 NC_060934.1 CM021577.2 97.78 True local misassembly 41630983 41633702 40306673 40309393 NC_060934.1 CM021577.2 97.06 True local misassembly 41637878 41640421 40310515 40313059 NC_060934.1 CM021577.2 98.47 True relocation, inconsistency = -112011 41528769 41532873 40313418 40317525 NC_060934.1 CM021577.2 98.32 True relocation, inconsistency = -1903187 39636500 39638715 40324339 40326557 NC_060934.1 CM021577.2 96.3 True relocation, inconsistency = 1929324 41568782 41574627 40327300 40333147 NC_060934.1 CM021577.2 98.39 True relocation, inconsistency = -11881 41568146 41570573 40338547 40340974 NC_060934.1 CM021577.2 98.58 True local misassembly 41568198 41575226 40340975 40348003 NC_060934.1 CM021577.2 98.48 True relocation, inconsistency = 79764 41655675 41659497 40348688 40352513 NC_060934.1 CM021577.2 97.78 True relocation, inconsistency = -181241 41480242 41481971 40354499 40356230 NC_060934.1 CM021577.2 98.61 True relocation, inconsistency = -1202948 40281535 40286673 40358742 40363880 NC_060934.1 CM021577.2 99.65 True relocation, inconsistency = 32585 40319259 40331238 40363881 40375860 NC_060934.1 CM021577.2 99.83 True relocation, inconsistency = 1237903 41569142 41575226 40375861 40381945 NC_060934.1 CM021577.2 98.59 True relocation, inconsistency = -7466 41568146 41572251 40382331 40386436 NC_060934.1 CM021577.2 98.56 True local misassembly 41570507 41574627 40387067 40391182 NC_060934.1 CM021577.2 98.33 True relocation, inconsistency = -242139 41332489 41334132 40391183 40392826 NC_060934.1 CM021577.2 98.43 True relocation, inconsistency = -1607762 39728130 39728687 40394586 40395143 NC_060934.1 CM021577.2 97.83 True relocation, inconsistency = 1699566 41428254 41430083 40395144 40396973 NC_060934.1 CM021577.2 98.2 True local misassembly 41430720 41432458 40397611 40399349 NC_060934.1 CM021577.2 98.56 True local misassembly 41433040 41434631 40399932 40401523 NC_060934.1 CM021577.2 98.62 True relocation, inconsistency = -103341 41332498 41334491 40402731 40404724 NC_060934.1 CM021577.2 98.89 True relocation, inconsistency = 233654 41568146 41574627 40404725 40411206 NC_060934.1 CM021577.2 98.86 True local misassembly 41572252 41574627 40411207 40413582 NC_060934.1 CM021577.2 98.81 True relocation, inconsistency = -1205664 40369197 40375489 40413816 40420109 NC_060934.1 CM021577.2 99.79 True indel: stretch of mismatches 40375490 40385234 40420110 40429854 NC_060934.1 CM021577.2 99.53 True relocation, inconsistency = 1223997 41609232 41610194 40429855 40430812 NC_060934.1 CM021577.2 97.28 True relocation, inconsistency = 30204 41640399 41643815 40430813 40434227 NC_060934.1 CM021577.2 97.51 True relocation, inconsistency = -293732 41353795 41355567 40437939 40439711 NC_060934.1 CM021577.2 98.14 True relocation, inconsistency = -1712644 39647261 39647939 40444049 40444727 NC_060934.1 CM021577.2 98.27 True relocation, inconsistency = 1702802 41350742 41353213 40444728 40447199 NC_060934.1 CM021577.2 98.42 True local misassembly 41353795 41355880 40447782 40449867 NC_060934.1 CM021577.2 98.23 True relocation, inconsistency = -1629824 39726057 39726776 40449868 40450587 NC_060934.1 CM021577.2 98.96 True local misassembly 39728130 39728724 40451941 40452535 NC_060934.1 CM021577.2 97.75 True relocation, inconsistency = 679192 40407917 40414119 40452536 40458736 NC_060934.1 CM021577.2 99.0 True relocation, inconsistency = 939769 41353889 41360606 40458737 40465455 NC_060934.1 CM021577.2 98.47 True relocation, inconsistency = 72117 41433040 41435099 40465772 40467831 NC_060934.1 CM021577.2 98.69 True relocation, inconsistency = -364678 41074774 41076556 40472184 40473966 NC_060934.1 CM021577.2 98.65 True relocation, inconsistency = 355175 41431732 41432458 40473967 40474693 NC_060934.1 CM021577.2 98.22 True relocation, inconsistency = 169008 41602091 41606819 40475318 40480049 NC_060934.1 CM021577.2 98.9 True relocation, inconsistency = 44793 41662160 41663812 40490597 40492249 NC_060934.1 CM021577.2 97.36 True relocation, inconsistency = -93330 41570483 41574627 40492250 40496394 NC_060934.1 CM021577.2 98.82 True relocation, inconsistency = 83827 41662160 41664541 40500100 40502483 NC_060934.1 CM021577.2 97.94 True relocation, inconsistency = -41053 41630523 41632013 40509518 40511008 NC_060934.1 CM021577.2 98.39 True fake: not a misassembly (possible transposable element) 41662160 41664541 40519104 40521487 NC_060934.1 CM021577.2 97.99 True fake: not a misassembly (possible transposable element) 41652280 41654651 40525843 40528214 NC_060934.1 CM021577.2 99.16 True relocation, inconsistency = -754811 40915414 40919237 40543788 40547613 NC_060934.1 CM021577.2 98.64 True local misassembly 40915552 40919237 40549354 40553041 NC_060934.1 CM021577.2 98.56 True local misassembly 40916822 40919524 40554357 40557062 NC_060934.1 CM021577.2 98.41 True relocation, inconsistency = 496202 41420190 41423274 40561526 40564613 NC_060934.1 CM021577.2 98.54 True relocation, inconsistency = 236879 41662160 41664485 40566620 40568947 NC_060934.1 CM021577.2 97.82 True relocation, inconsistency = -749024 40915462 40919524 40568948 40573011 NC_060934.1 CM021577.2 98.62 True relocation, inconsistency = -391129 40539171 40548222 40583787 40592838 NC_060934.1 CM021577.2 100.0 True local misassembly 40542452 40547755 40592839 40598142 NC_060934.1 CM021577.2 99.74 True relocation, inconsistency = 1021026 41568782 41574627 40598143 40603988 NC_060934.1 CM021577.2 98.7 True relocation, inconsistency = -1886899 39689351 39690565 40605611 40606825 NC_060934.1 CM021577.2 98.77 True relocation, inconsistency = 1938830 41630983 41631671 40608413 40609101 NC_060934.1 CM021577.2 98.03 True relocation, inconsistency = -227380 41404292 41407244 40609102 40612059 NC_060934.1 CM021577.2 97.94 True relocation, inconsistency = -1722988 39687994 39689202 40615797 40617006 NC_060934.1 CM021577.2 98.6 True relocation, inconsistency = 1664782 41355149 41360606 40618171 40623628 NC_060934.1 CM021577.2 98.66 True relocation, inconsistency = -32242 41328681 41331810 40623945 40627074 NC_060934.1 CM021577.2 98.5 True relocation, inconsistency = -1661392 39671820 39673081 40628476 40629736 NC_060934.1 CM021577.2 98.73 True relocation, inconsistency = 1243080 40916822 40919524 40630397 40633102 NC_060934.1 CM021577.2 98.19 True relocation, inconsistency = 719511 41639036 41640421 40633103 40634488 NC_060934.1 CM021577.2 98.53 True relocation, inconsistency = -1050553 40590387 40614479 40635007 40659101 NC_060934.1 CM021577.2 99.73 True relocation, inconsistency = 936161 41568230 41570521 40676691 40678982 NC_060934.1 CM021577.2 98.53 True local misassembly 41568146 41574627 40678983 40685465 NC_060934.1 CM021577.2 98.57 True local misassembly 41569876 41572564 40685466 40688154 NC_060934.1 CM021577.2 98.69 True relocation, inconsistency = 54309 41630983 41633240 40692264 40694521 NC_060934.1 CM021577.2 98.45 True relocation, inconsistency = 20023 41654995 41658118 40696253 40699378 NC_060934.1 CM021577.2 98.18 True relocation, inconsistency = -101487 41560634 41562693 40703381 40705440 NC_060934.1 CM021577.2 98.5 True relocation, inconsistency = 64834 41630523 41631576 40708436 40709489 NC_060934.1 CM021577.2 98.31 True relocation, inconsistency = 12216 41643793 41647925 40709490 40713622 NC_060934.1 CM021577.2 98.94 True relocation, inconsistency = -259458 41393926 41396313 40719081 40721468 NC_060934.1 CM021577.2 98.58 True relocation, inconsistency = -1668510 39729744 39732893 40723409 40726560 NC_060934.1 CM021577.2 98.54 True relocation, inconsistency = 1834628 41568146 41575226 40727185 40734260 NC_060934.1 CM021577.2 98.11 True relocation, inconsistency = -885595 40689632 40693025 40734261 40737654 NC_060934.1 CM021577.2 99.41 True relocation, inconsistency = 403502 41096863 41098162 40737990 40739289 NC_060934.1 CM021577.2 98.46 True indel: indel (<= 5bp) 41098591 41099996 40739720 40741125 NC_060934.1 CM021577.2 98.51 True relocation, inconsistency = 529617 41630956 41632134 40742468 40743646 NC_060934.1 CM021577.2 98.13 True relocation, inconsistency = -933114 40700001 40781305 40744627 40825930 NC_060934.1 CM021577.2 99.91 True local misassembly 40785134 40806017 40829758 40850643 NC_060934.1 CM021577.2 99.83 True relocation, inconsistency = 821824 41627842 41629198 40850644 40852000 NC_060934.1 CM021577.2 98.31 True relocation, inconsistency = -1884189 39745447 39748535 40852438 40855526 NC_060934.1 CM021577.2 98.77 True relocation, inconsistency = 757599 40510164 40511198 40859556 40860590 NC_060934.1 CM021577.2 99.04 True relocation, inconsistency = 1126588 41637787 41640835 40860591 40863639 NC_060934.1 CM021577.2 98.2 True relocation, inconsistency = 9843 41651941 41653042 40864902 40866003 NC_060934.1 CM021577.2 98.09 True relocation, inconsistency = -27828 41625215 41629183 40866004 40869971 NC_060934.1 CM021577.2 97.63 True relocation, inconsistency = -1814229 39818071 39819315 40873088 40874332 NC_060934.1 CM021577.2 97.03 True relocation, inconsistency = 1010393 40834183 40836075 40878807 40880698 NC_060934.1 CM021577.2 98.73 True indel: indel (<= 5bp) 40836217 40857699 40880841 40902323 NC_060934.1 CM021577.2 99.58 True relocation, inconsistency = -1156870 39702921 39705642 40904415 40907137 NC_060934.1 CM021577.2 98.25 True relocation, inconsistency = 1858726 41564369 41572720 40907138 40915486 NC_060934.1 CM021577.2 98.47 True relocation, inconsistency = -10185 41562632 41565513 40915583 40918463 NC_060934.1 CM021577.2 97.88 True relocation, inconsistency = -649586 40916822 40918934 40919358 40921473 NC_060934.1 CM021577.2 98.3 True relocation, inconsistency = 720868 41640399 41643817 40922070 40925488 NC_060934.1 CM021577.2 98.45 True relocation, inconsistency = -10857 41638489 41640398 40931017 40932926 NC_060934.1 CM021577.2 98.38 True local misassembly 41640399 41643491 40933266 40936358 NC_060934.1 CM021577.2 98.19 True relocation, inconsistency = -95038 41548757 41551466 40936662 40939371 NC_060934.1 CM021577.2 98.15 True relocation, inconsistency = -656714 40895436 40918744 40940055 40963361 NC_060934.1 CM021577.2 99.82 True indel: indel (<= 5bp) 40918867 40920126 40963485 40964745 NC_060934.1 CM021577.2 98.1 True relocation, inconsistency = 641782 41562671 41565513 40965508 40968351 NC_060934.1 CM021577.2 98.52 True relocation, inconsistency = -444418 41121647 41123747 40968903 40971003 NC_060934.1 CM021577.2 97.76 True relocation, inconsistency = -263206 40860542 40861382 40971004 40971844 NC_060934.1 CM021577.2 97.83 True relocation, inconsistency = 795872 41657255 41659365 40971845 40973957 NC_060934.1 CM021577.2 97.77 True relocation, inconsistency = -35970 41623396 41627125 40973958 40977687 NC_060934.1 CM021577.2 98.12 True relocation, inconsistency = -694067 40936248 41008686 40980877 41053313 NC_060934.1 CM021577.2 99.8 True relocation, inconsistency = -1246633 39762054 39762754 41053314 41054014 NC_060934.1 CM021577.2 98.18 True relocation, inconsistency = -87225 39677131 39679041 41055616 41057526 NC_060934.1 CM021577.2 98.01 True relocation, inconsistency = 1963266 41643793 41647246 41059012 41062465 NC_060934.1 CM021577.2 98.93 True relocation, inconsistency = -69919 41577692 41580939 41062830 41066077 NC_060934.1 CM021577.2 98.28 True relocation, inconsistency = -1821054 39760992 39762754 41067184 41068946 NC_060934.1 CM021577.2 98.07 True relocation, inconsistency = -26811 39737555 39739595 41070558 41072598 NC_060934.1 CM021577.2 97.16 True relocation, inconsistency = -76701 39664237 39666709 41073941 41076413 NC_060934.1 CM021577.2 97.17 True relocation, inconsistency = 55661 39723936 39724814 41077979 41078857 NC_060934.1 CM021577.2 98.27 True relocation, inconsistency = 1900140 41624955 41626854 41078858 41080757 NC_060934.1 CM021577.2 97.32 True relocation, inconsistency = -328690 41298213 41302623 41080806 41085216 NC_060934.1 CM021577.2 97.96 True relocation, inconsistency = -262026 41065987 41085913 41110606 41130526 NC_060934.1 CM021577.2 98.77 True fake: not a misassembly (possible transposable element) 41658628 41659823 41130527 41131725 NC_060934.1 CM021577.2 97.3 True fake: not a misassembly (possible transposable element) 41087112 41116751 41131726 41161365 NC_060934.1 CM021577.2 99.56 True relocation, inconsistency = -1472687 39644182 39646237 41161483 41163540 NC_060934.1 CM021577.2 95.82 True relocation, inconsistency = -15610 39635282 39636105 41168195 41169018 NC_060934.1 CM021577.2 98.67 True indel: indel (<= 5bp) 39636106 39636638 41169020 41169552 NC_060934.1 CM021577.2 96.44 True local misassembly 39638572 39639863 41169792 41171083 NC_060934.1 CM021577.2 98.3 True local misassembly 39635454 39636105 41171084 41171735 NC_060934.1 CM021577.2 98.41 True indel: indel (<= 5bp) 39636106 39636872 41171737 41172503 NC_060934.1 CM021577.2 98.44 True relocation, inconsistency = 1491009 41129187 41153628 41173809 41198250 NC_060934.1 CM021577.2 99.53 True fake: not a misassembly (possible transposable element) 41630561 41631980 41204290 41205709 NC_060934.1 CM021577.2 98.38 True fake: not a misassembly (possible transposable element) 41161528 41190511 41206157 41235140 NC_060934.1 CM021577.2 99.96 True relocation, inconsistency = -1430946 39760992 39762360 41236567 41237935 NC_060934.1 CM021577.2 96.3 True relocation, inconsistency = 1534456 41300372 41302623 41241491 41243742 NC_060934.1 CM021577.2 98.62 True relocation, inconsistency = 339886 41643793 41646509 41245026 41247742 NC_060934.1 CM021577.2 98.92 True relocation, inconsistency = -289660 41356850 41358480 41247743 41249373 NC_060934.1 CM021577.2 98.64 True relocation, inconsistency = -153742 41204739 41217437 41249374 41262073 NC_060934.1 CM021577.2 99.79 True relocation, inconsistency = -1497805 39719645 39720568 41262086 41263011 NC_060934.1 CM021577.2 98.49 True relocation, inconsistency = 1670209 41393926 41396292 41266160 41268526 NC_060934.1 CM021577.2 97.85 True fake: not a misassembly (possible transposable element) 41631993 41632961 41268527 41269495 NC_060934.1 CM021577.2 97.74 True fake: not a misassembly (possible transposable element) 41397264 41398227 41269496 41270459 NC_060934.1 CM021577.2 97.53 True relocation, inconsistency = 255044 41653272 41654586 41270460 41271774 NC_060934.1 CM021577.2 98.56 True relocation, inconsistency = -1020681 40646839 40647969 41284708 41285838 NC_060934.1 CM021577.2 99.38 True relocation, inconsistency = 593229 41241766 41290398 41286406 41335036 NC_060934.1 CM021577.2 99.83 True relocation, inconsistency = 361608 41652007 41652948 41335037 41335978 NC_060934.1 CM021577.2 98.17 True relocation, inconsistency = 8815 41662547 41663808 41336762 41338023 NC_060934.1 CM021577.2 97.6 True relocation, inconsistency = -1981247 39682562 39684986 41338024 41340447 NC_060934.1 CM021577.2 97.9 True relocation, inconsistency = 1606412 41291514 41298402 41340563 41347449 NC_060934.1 CM021577.2 98.48 True relocation, inconsistency = 229233 41528769 41532894 41348583 41352710 NC_060934.1 CM021577.2 98.5 True relocation, inconsistency = -1774215 39760922 39762318 41354953 41356349 NC_060934.1 CM021577.2 99.01 True relocation, inconsistency = -38006 39724313 39725927 41356350 41357965 NC_060934.1 CM021577.2 98.08 True relocation, inconsistency = 1916430 41644567 41645830 41360175 41361438 NC_060934.1 CM021577.2 98.48 True relocation, inconsistency = 8147 41653978 41655593 41361439 41363054 NC_060934.1 CM021577.2 98.08 True relocation, inconsistency = -337173 41319517 41397298 41364151 41441932 NC_060934.1 CM021577.2 99.93 True fake: not a misassembly (possible transposable element) 39626634 39627279 41441933 41442578 NC_060934.1 CM021577.2 98.99 True fake: not a misassembly (possible transposable element) 41400399 41432574 41445033 41477208 NC_060934.1 CM021577.2 99.93 True indel: indel (<= 5bp) 41432785 41436849 41477421 41481482 NC_060934.1 CM021577.2 97.96 True relocation, inconsistency = -1761679 39675503 39680376 41481815 41486688 NC_060934.1 CM021577.2 97.52 True relocation, inconsistency = 1772199 41452761 41453803 41486874 41487916 NC_060934.1 CM021577.2 97.22 True relocation, inconsistency = -10519 41445032 41492006 41489664 41536638 NC_060934.1 CM021577.2 99.97 True indel: indel (<= 5bp) 41492436 41494027 41537069 41538660 NC_060934.1 CM021577.2 98.49 True indel: stretch of mismatches 41494447 41500975 41539080 41545610 NC_060934.1 CM021577.2 98.47 True local misassembly 41507106 41513762 41551745 41558401 NC_060934.1 CM021577.2 99.67 True indel: stretch of mismatches 41513878 41589497 41558517 41634135 NC_060934.1 CM021577.2 99.87 True relocation, inconsistency = -1826493 39764108 39764827 41635239 41635961 NC_060934.1 CM021577.2 96.25 True relocation, inconsistency = -56331 39708497 39710402 41635962 41637867 NC_060934.1 CM021577.2 97.53 True relocation, inconsistency = -18328 39693068 39694481 41638861 41640274 NC_060934.1 CM021577.2 98.02 True relocation, inconsistency = 1901163 41596158 41597689 41640788 41642319 NC_060934.1 CM021577.2 97.52 True local misassembly 41598282 41607051 41642911 41651680 NC_060934.1 CM021577.2 99.07 True relocation, inconsistency = -45823 41562681 41564588 41653133 41655036 NC_060934.1 CM021577.2 97.46 True relocation, inconsistency = -1878411 39686178 39689202 41655037 41658062 NC_060934.1 CM021577.2 98.15 True indel: indel (<= 5bp) 39689351 39690510 41658210 41659369 NC_060934.1 CM021577.2 98.19 True relocation, inconsistency = 1924236 41615414 41620038 41660037 41664658 NC_060934.1 CM021577.2 98.12 True local misassembly 41621058 41717903 41665678 41762523 NC_060934.1 CM021577.2 99.63 True relocation, inconsistency = 24088 41742803 41743561 41763335 41764093 NC_060934.1 CM021577.2 97.63 True local misassembly 41743853 41745748 41765064 41766959 NC_060934.1 CM021577.2 98.42 True local misassembly 41746211 41831509 41767083 41852398 NC_060934.1 CM021577.2 98.97 True local misassembly 41832844 41839130 41853736 41860022 NC_060934.1 CM021577.2 97.11 True local misassembly 41839131 41840125 41860362 41861356 NC_060934.1 CM021577.2 96.68 True indel: indel (<= 5bp) 41840128 41840779 41861357 41862008 NC_060934.1 CM021577.2 96.17 True local misassembly 41841457 41842007 41862009 41862559 NC_060934.1 CM021577.2 96.19 True indel: indel (<= 5bp) 41842008 41842638 41862561 41863191 NC_060934.1 CM021577.2 96.51 True local misassembly 41842639 41847934 41863530 41868825 NC_060934.1 CM021577.2 99.94 True indel: indel (<= 5bp) 41848296 41849362 41869186 41870252 NC_060934.1 CM021577.2 97.56 True local misassembly 41849913 41850543 41870804 41871434 NC_060934.1 CM021577.2 97.46 True local misassembly 41851172 41852037 41871726 41872591 NC_060934.1 CM021577.2 97.69 True local misassembly 41852949 41854177 41873502 41874730 NC_060934.1 CM021577.2 98.29 True indel: indel (<= 5bp) 41854178 41855081 41874732 41875635 NC_060934.1 CM021577.2 97.9 True local misassembly 41855082 41857701 41875976 41878595 NC_060934.1 CM021577.2 98.28 True indel: indel (<= 5bp) 41857702 41861682 41878597 41882577 NC_060934.1 CM021577.2 98.17 True relocation, inconsistency = -17652 41844221 41845780 41882768 41884327 NC_060934.1 CM021577.2 97.31 True local misassembly 41845781 41847011 41884668 41885898 NC_060934.1 CM021577.2 97.32 True local misassembly 41847012 41848115 41886239 41887342 NC_060934.1 CM021577.2 97.37 True relocation, inconsistency = 17990 41866647 41892131 41887884 41913032 NC_060934.1 CM021577.2 95.7 True local misassembly 41892935 41914679 41913835 41935591 NC_060934.1 CM021577.2 98.88 True local misassembly 41921355 41922323 41942610 41943578 NC_060934.1 CM021577.2 98.56 True local misassembly 41924214 42118266 41945129 42139191 NC_060934.1 CM021577.2 99.75 True local misassembly 42123253 42168176 42139192 42184203 NC_060934.1 CM021577.2 98.97 True local misassembly 42168168 42174667 42185237 42191741 NC_060934.1 CM021577.2 99.19 True local misassembly 42176456 42209939 42191742 42225255 NC_060934.1 CM021577.2 99.14 True relocation, inconsistency = 7938 42217878 42219633 42225256 42227016 NC_060934.1 CM021577.2 99.31 True relocation, inconsistency = 12964 42232598 42282419 42227017 42276907 NC_060934.1 CM021577.2 98.84 True local misassembly 42286449 42294064 42276908 42284289 NC_060934.1 CM021577.2 95.86 True relocation, inconsistency = -139150 42163691 42164334 42293066 42293709 NC_060934.1 CM021577.2 97.83 True local misassembly 42164628 42165200 42293908 42294480 NC_060934.1 CM021577.2 98.43 True relocation, inconsistency = 125658 42291737 42337725 42295359 42341378 NC_060934.1 CM021577.2 99.0 True local misassembly 42334182 42347447 42341379 42354634 NC_060934.1 CM021577.2 98.66 True local misassembly 42351368 42403042 42354635 42405901 NC_060934.1 CM021577.2 97.97 True relocation, inconsistency = 32486 42435529 42550643 42405902 42520886 NC_060934.1 CM021577.2 99.32 True local misassembly 42549991 42561878 42521245 42533132 NC_060934.1 CM021577.2 98.84 True local misassembly 42565991 42599197 42533133 42566036 NC_060934.1 CM021577.2 98.85 True local misassembly 42597101 42599988 42566931 42569818 NC_060934.1 CM021577.2 99.45 True local misassembly 42599989 42614089 42570287 42584387 NC_060934.1 CM021577.2 99.66 True relocation, inconsistency = 152719 42767088 42772449 42584667 42590028 NC_060934.1 CM021577.2 99.46 True relocation, inconsistency = -136198 42637029 42637882 42590806 42591660 NC_060934.1 CM021577.2 97.78 True relocation, inconsistency = -88048 42549991 42565283 42591817 42607109 NC_060934.1 CM021577.2 99.85 True relocation, inconsistency = 147477 42712761 42716536 42607110 42610863 NC_060934.1 CM021577.2 99.21 True local misassembly 42712500 42784021 42610864 42682656 NC_060934.1 CM021577.2 98.65 True local misassembly 42788062 42788569 42687090 42687596 NC_060934.1 CM021577.2 97.44 True relocation, inconsistency = -15894 42775709 42779284 42690630 42694280 NC_060934.1 CM021577.2 95.78 True relocation, inconsistency = 94368 42873653 42875678 42694281 42696316 NC_060934.1 CM021577.2 96.61 True fake: not a misassembly (possible transposable element) 42797667 42802316 42697367 42702016 NC_060934.1 CM021577.2 99.68 True fake: not a misassembly (possible transposable element) 42881618 42883347 42702017 42703746 NC_060934.1 CM021577.2 98.67 True local misassembly 42883677 42884354 42703747 42704424 NC_060934.1 CM021577.2 99.71 True indel: indel (> 5bp) 42884567 42885280 42704621 42705334 NC_060934.1 CM021577.2 97.48 True relocation, inconsistency = -35038 42850351 42856957 42705443 42712038 NC_060934.1 CM021577.2 98.3 True relocation, inconsistency = 11314 42869116 42870330 42712883 42714097 NC_060934.1 CM021577.2 98.85 True local misassembly 42868488 42870327 42714819 42716658 NC_060934.1 CM021577.2 99.46 True local misassembly 42872810 42874021 42717076 42718287 NC_060934.1 CM021577.2 99.01 True local misassembly 42872810 42875493 42718705 42721388 NC_060934.1 CM021577.2 98.85 True local misassembly 42875823 42876500 42721389 42722066 NC_060934.1 CM021577.2 99.71 True indel: indel (> 5bp) 42876713 42877426 42722263 42722976 NC_060934.1 CM021577.2 97.62 True relocation, inconsistency = -18084 42859727 42872139 42723361 42735681 NC_060934.1 CM021577.2 97.53 True fake: not a misassembly (possible transposable element) 42810505 42812464 42736368 42738327 NC_060934.1 CM021577.2 98.62 True fake: not a misassembly (possible transposable element) 42874945 42875847 42738328 42739230 NC_060934.1 CM021577.2 96.75 True relocation, inconsistency = -62894 42813586 42822374 42739863 42748651 NC_060934.1 CM021577.2 99.85 True local misassembly 42818169 42864244 42748683 42795169 NC_060934.1 CM021577.2 98.57 True relocation, inconsistency = -35652 42828593 42830984 42795170 42797561 NC_060934.1 CM021577.2 98.84 True local misassembly 42831022 42831689 42797942 42798609 NC_060934.1 CM021577.2 98.38 True relocation, inconsistency = 58496 42890186 42901659 42798610 42810093 NC_060934.1 CM021577.2 98.76 True relocation, inconsistency = -65650 42836010 42862418 42810094 42836874 NC_060934.1 CM021577.2 97.32 True relocation, inconsistency = 36443 42899182 42899865 42837195 42837888 NC_060934.1 CM021577.2 96.25 True relocation, inconsistency = -63857 42836010 42874474 42837890 42876664 NC_060934.1 CM021577.2 98.33 True relocation, inconsistency = 34522 42908997 42916052 42876665 42883668 NC_060934.1 CM021577.2 99.32 True local misassembly 42913780 42938986 42883869 42909023 NC_060934.1 CM021577.2 99.58 True local misassembly 42945050 42963907 42909024 42927956 NC_060934.1 CM021577.2 98.1 True local misassembly 42962082 42977784 42927957 42943659 NC_060934.1 CM021577.2 99.52 True local misassembly 42971406 44180761 42943660 44152822 NC_060934.1 CM021577.2 99.86 True indel: indel (<= 5bp) 44181033 47163712 44153091 47135271 NC_060934.1 CM021577.2 99.81 True local misassembly 47169405 49504078 47135273 49468571 NC_060934.1 CM021577.2 99.72 True indel: indel (> 5bp) 49504398 53681675 49468816 53644567 NC_060934.1 CM021577.2 99.77 True local misassembly 53682624 60043106 53645620 60001223 NC_060934.1 CM021577.2 99.64 True relocation, inconsistency = 13093 60056200 63939510 60001224 63882167 NC_060934.1 CM021577.2 99.72 True indel: indel (> 5bp) 63939631 64668407 63882269 64612901 NC_060934.1 CM021577.2 99.44 True local misassembly 64668878 68928258 64613502 68868173 NC_060934.1 CM021577.2 99.66 True indel: indel (> 5bp) 68928271 71424320 68868174 71363982 NC_060934.1 CM021577.2 99.88 True indel: indel (> 5bp) 71424614 74531368 71364194 74467495 NC_060934.1 CM021577.2 99.6 True indel: stretch of mismatches 74531562 77507748 74467689 77438886 NC_060934.1 CM021577.2 99.73 True indel: stretch of mismatches 77507923 80510619 77439061 80441829 NC_060934.1 CM021577.2 99.82 True local misassembly 80511355 80583589 80442536 80514693 NC_060934.1 CM021577.2 99.17 True relocation, inconsistency = 31140 80614730 80721756 80514694 80621687 NC_060934.1 CM021577.2 99.7 True relocation, inconsistency = -107027 80614730 81496944 80621688 81503888 NC_060934.1 CM021577.2 99.74 True local misassembly 81499698 86238152 81503889 86239253 NC_060934.1 CM021577.2 99.69 True indel: stretch of mismatches 86238153 101282852 86239254 101284308 NC_060934.1 CM021577.2 99.8 True local misassembly 101282851 106994992 101285534 106991179 NC_060934.1 CM021577.2 99.61 True indel: stretch of mismatches 106995017 108370995 106991204 108367257 NC_060934.1 CM021577.2 99.84 True local misassembly 108371043 112126556 108367445 112122683 NC_060934.1 CM021577.2 99.89 True relocation, inconsistency = 7085 112133858 112322184 112122900 112311289 NC_060934.1 CM021577.2 99.58 True local misassembly 112323125 114977141 112312439 114965712 NC_060934.1 CM021577.2 99.76 True local misassembly 114977430 119143157 114966148 119131702 NC_060934.1 CM021577.2 99.84 True indel: indel (> 5bp) 119143307 120290158 119131802 120277944 NC_060934.1 CM021577.2 99.74 True local misassembly 120290327 121629710 120278563 121617789 NC_060934.1 CM021577.2 99.87 True local misassembly 121630656 123353541 121618985 123342422 NC_060934.1 CM021577.2 99.7 True local misassembly 123353596 123482264 123342866 123471541 NC_060934.1 CM021577.2 99.66 True relocation, inconsistency = -12715 123476399 124170146 123478391 124173738 NC_060934.1 CM021577.2 99.66 True local misassembly 124169308 125108019 124174050 125112526 NC_060934.1 CM021577.2 99.81 True indel: indel (> 5bp) 125108192 125349701 125112687 125354172 NC_060934.1 CM021577.2 99.65 True indel: indel (> 5bp) 125349833 126389830 125354287 126393532 NC_060934.1 CM021577.2 99.75 True local misassembly 126391063 127447052 126393545 127450721 NC_060934.1 CM021577.2 99.69 True local misassembly 127447143 127459265 127450994 127462841 NC_060934.1 CM021577.2 97.47 True indel: indel (> 5bp) 127459365 128241744 127463023 128249989 NC_060934.1 CM021577.2 99.21 True indel: indel (> 5bp) 128241811 128609643 128250043 128617484 NC_060934.1 CM021577.2 99.41 True local misassembly 128610853 129097212 128617552 129102643 NC_060934.1 CM021577.2 99.42 True indel: indel (> 5bp) 129097214 129363472 129102675 129369150 NC_060934.1 CM021577.2 99.61 True relocation, inconsistency = 22608 129386081 130443897 129369151 130426308 NC_060934.1 CM021577.2 99.68 True local misassembly 130445389 131971541 130427190 131953456 NC_060934.1 CM021577.2 99.72 True local misassembly 131977013 132282629 131956815 132262826 NC_060934.1 CM021577.2 99.55 True indel: indel (> 5bp) 132282837 132557382 132263002 132537468 NC_060934.1 CM021577.2 99.65 True local misassembly 132558243 132821940 132538116 132808882 NC_060934.1 CM021577.2 96.28 True local misassembly 132823009 133038113 132809926 133024726 NC_060934.1 CM021577.2 99.53 True local misassembly 133038389 133100351 133024862 133086974 NC_060934.1 CM021577.2 98.98 True local misassembly 133102063 133114319 133088128 133100453 NC_060934.1 CM021577.2 97.81 True local misassembly 133116212 133123794 133102377 133110054 NC_060934.1 CM021577.2 98.32 True indel: indel (> 5bp) 133124010 133838031 133110242 133826762 NC_060934.1 CM021577.2 98.83 True local misassembly 133838060 133953732 133826896 133943166 NC_060934.1 CM021577.2 98.93 True fake: not a misassembly (possible transposable element) 180972486 180974757 133946329 133944074 NC_060929.1 CM021577.2 95.38 True fake: not a misassembly (possible transposable element) 133953432 134091201 133947368 134083810 NC_060934.1 CM021577.2 98.47 True local misassembly 134093088 134093640 134085447 134085999 NC_060934.1 CM021577.2 99.1 True local misassembly 134094729 134552554 134086338 134544933 NC_060934.1 CM021577.2 98.77 True relocation, inconsistency = 152509 134705064 134755089 134544934 134594964 NC_060934.1 CM021577.2 99.92 True CONTIG CM021577.2 134598001 misassembled 110 236931 106 227041 NC_060935.1 CM021578.2 95.02 True indel: indel (> 5bp) 237139 353070 227175 343697 NC_060935.1 CM021578.2 98.71 True inversion 353071 359178 349805 343698 NC_060935.1 CM021578.2 99.88 True inversion 359179 447009 349806 437210 NC_060935.1 CM021578.2 96.18 True local misassembly 447685 456425 438150 447010 NC_060935.1 CM021578.2 96.6 True local misassembly 458131 460654 448159 450682 NC_060935.1 CM021578.2 99.88 True indel: indel (> 5bp) 460675 468144 450683 458152 NC_060935.1 CM021578.2 99.91 True indel: indel (<= 5bp) 468145 469198 458154 459207 NC_060935.1 CM021578.2 99.81 True indel: indel (<= 5bp) 469199 470349 459212 460362 NC_060935.1 CM021578.2 99.83 True local misassembly 471241 473331 461073 463163 NC_060935.1 CM021578.2 100.0 True local misassembly 473332 476626 463491 466785 NC_060935.1 CM021578.2 99.76 True local misassembly 476940 478858 468028 469946 NC_060935.1 CM021578.2 99.84 True indel: indel (> 5bp) 478886 480847 469947 471908 NC_060935.1 CM021578.2 99.75 True indel: indel (> 5bp) 481186 482046 472282 473142 NC_060935.1 CM021578.2 99.65 True indel: indel (> 5bp) 482213 1080854 473232 1069550 NC_060935.1 CM021578.2 98.25 True local misassembly 1083385 1148816 1072081 1137748 NC_060935.1 CM021578.2 99.38 True local misassembly 1149565 1155674 1138089 1144187 NC_060935.1 CM021578.2 97.9 True indel: indel (<= 5bp) 1155717 1408343 1144231 1396483 NC_060935.1 CM021578.2 98.32 True indel: indel (> 5bp) 1408351 1717257 1396527 1699208 NC_060935.1 CM021578.2 97.3 True local misassembly 1719581 1755275 1699209 1734658 NC_060935.1 CM021578.2 95.84 True local misassembly 1755940 3186420 1735566 3164162 NC_060935.1 CM021578.2 99.54 True local misassembly 3186947 3960989 3164773 3928417 NC_060935.1 CM021578.2 98.45 True indel: indel (> 5bp) 3961057 4359955 3928469 4327340 NC_060935.1 CM021578.2 99.7 True local misassembly 4354997 7172285 4327341 7143245 NC_060935.1 CM021578.2 99.57 True local misassembly 7174063 8282629 7143246 8238875 NC_060935.1 CM021578.2 98.49 True indel: indel (> 5bp) 8282760 9062586 8238950 9018660 NC_060935.1 CM021578.2 99.75 True indel: indel (> 5bp) 9063003 9283739 9018997 9239111 NC_060935.1 CM021578.2 99.49 True indel: indel (> 5bp) 9283867 11331522 9239201 11285964 NC_060935.1 CM021578.2 99.66 True local misassembly 11333037 11333593 11287511 11288067 NC_060935.1 CM021578.2 100.0 True local misassembly 11336109 12733020 11290097 12682873 NC_060935.1 CM021578.2 99.54 True local misassembly 12733734 14253318 12683450 14202623 NC_060935.1 CM021578.2 99.86 True relocation, inconsistency = -31803 14221605 14252958 14202713 14234115 NC_060935.1 CM021578.2 99.36 True local misassembly 14253519 16989782 14234349 16969261 NC_060935.1 CM021578.2 99.83 True indel: stretch of mismatches 16989810 22364422 16969289 22346258 NC_060935.1 CM021578.2 99.75 True local misassembly 22364250 22538024 22347210 22520672 NC_060935.1 CM021578.2 99.53 True indel: indel (> 5bp) 22538169 24732945 22520857 24716019 NC_060935.1 CM021578.2 99.74 True local misassembly 24733201 25051832 24716409 25035874 NC_060935.1 CM021578.2 99.55 True local misassembly 25052181 26197281 25036031 26180409 NC_060935.1 CM021578.2 99.38 True local misassembly 26197877 32503169 26181000 32482755 NC_060935.1 CM021578.2 99.73 True local misassembly 32504591 34163664 32482815 34141716 NC_060935.1 CM021578.2 99.79 True indel: indel (> 5bp) 34163718 34824241 34141738 34802354 NC_060935.1 CM021578.2 99.85 True indel: indel (> 5bp) 34824243 37888104 34802433 37865739 NC_060935.1 CM021578.2 99.64 True indel: indel (> 5bp) 37888152 43100756 37865774 43077500 NC_060935.1 CM021578.2 99.79 True relocation, inconsistency = 8192 43108949 43163404 43077501 43131909 NC_060935.1 CM021578.2 99.63 True indel: indel (> 5bp) 43163513 46878084 43132057 46847685 NC_060935.1 CM021578.2 99.79 True local misassembly 46878886 48861741 46847686 48820375 NC_060935.1 CM021578.2 99.24 True local misassembly 48861728 48881383 48821390 48841040 NC_060935.1 CM021578.2 99.69 True local misassembly 48883600 49099293 48841041 49057779 NC_060935.1 CM021578.2 99.0 True local misassembly 49099965 49873023 49057780 49830595 NC_060935.1 CM021578.2 99.64 True local misassembly 49873213 50313723 49830639 50271579 NC_060935.1 CM021578.2 99.49 True relocation, inconsistency = 165652 50479376 50519569 50311714 50271580 NC_060935.1 CM021578.2 99.38 True local misassembly 50313724 50477847 50477348 50313142 NC_060935.1 CM021578.2 99.57 True relocation, inconsistency = 41722 50519570 50831969 50477349 50789793 NC_060935.1 CM021578.2 99.33 True local misassembly 50830334 50857992 50789794 50817448 NC_060935.1 CM021578.2 99.73 True local misassembly 50858850 50912400 50817449 50870836 NC_060935.1 CM021578.2 99.3 True indel: stretch of mismatches 50912577 50935189 50871013 50893628 NC_060935.1 CM021578.2 99.79 True local misassembly 50937929 51010647 50893629 50966523 NC_060935.1 CM021578.2 99.48 True local misassembly 51007912 51010407 50966524 50969019 NC_060935.1 CM021578.2 99.5 True local misassembly 51007672 51010647 50969020 50971995 NC_060935.1 CM021578.2 99.5 True local misassembly 51007912 51010407 50971996 50974491 NC_060935.1 CM021578.2 99.53 True local misassembly 51007672 51010647 50974492 50977467 NC_060935.1 CM021578.2 99.53 True local misassembly 51007912 51010407 50977468 50979963 NC_060935.1 CM021578.2 99.5 True local misassembly 51007672 51010647 50979964 50982939 NC_060935.1 CM021578.2 99.5 True local misassembly 51007912 51010407 50982940 50985435 NC_060935.1 CM021578.2 99.53 True local misassembly 51007672 51010647 50985436 50988411 NC_060935.1 CM021578.2 99.43 True local misassembly 51007912 51010407 50988412 50990907 NC_060935.1 CM021578.2 99.53 True local misassembly 51007672 51010647 50990908 50993883 NC_060935.1 CM021578.2 99.5 True local misassembly 51007912 51010407 50993884 50996379 NC_060935.1 CM021578.2 99.53 True local misassembly 51007672 51036437 50996380 51025284 NC_060935.1 CM021578.2 97.07 True fake: not a misassembly (possible transposable element) 51044930 51045972 51025285 51026327 NC_060935.1 CM021578.2 95.48 True fake: not a misassembly (possible transposable element) 51037482 51040365 51026328 51029211 NC_060935.1 CM021578.2 98.16 True indel: indel (<= 5bp) 51040695 51052132 51029542 51040983 NC_060935.1 CM021578.2 99.11 True local misassembly 51048491 51059418 51041590 51052518 NC_060935.1 CM021578.2 98.21 True relocation, inconsistency = 2091077 53150496 53155818 51052519 51057822 NC_060935.1 CM021578.2 97.49 True relocation, inconsistency = -2086829 51068990 51186730 51057823 51175559 NC_060935.1 CM021578.2 99.88 True local misassembly 51195312 51221650 51184143 51210481 NC_060935.1 CM021578.2 99.69 True relocation, inconsistency = 2669596 53891247 53893897 51210482 51213132 NC_060935.1 CM021578.2 98.29 True relocation, inconsistency = 96892 53990962 53998808 51213305 51221152 NC_060935.1 CM021578.2 98.64 True relocation, inconsistency = -17848 53980961 53985011 51221153 51225204 NC_060935.1 CM021578.2 98.59 True local misassembly 53990962 54002769 51225205 51237013 NC_060935.1 CM021578.2 98.58 True relocation, inconsistency = -113041 53889729 53894743 51237014 51242028 NC_060935.1 CM021578.2 98.62 True relocation, inconsistency = -2641552 51253192 51528780 51242029 51517614 NC_060935.1 CM021578.2 99.89 True relocation, inconsistency = 809823 52341781 52348268 51520792 51527279 NC_060935.1 CM021578.2 98.83 True relocation, inconsistency = 1723144 54071413 54075123 51527280 51530991 NC_060935.1 CM021578.2 98.53 True relocation, inconsistency = -2226995 51848129 51856775 51530992 51539638 NC_060935.1 CM021578.2 98.66 True local misassembly 51855779 51861025 51542892 51548138 NC_060935.1 CM021578.2 98.78 True relocation, inconsistency = -741257 51119769 51123866 51548139 51552236 NC_060935.1 CM021578.2 98.29 True relocation, inconsistency = 3014145 54138104 54141639 51552329 51555867 NC_060935.1 CM021578.2 98.12 True relocation, inconsistency = -1538222 52603418 52609217 51555868 51561666 NC_060935.1 CM021578.2 98.26 True relocation, inconsistency = 637935 53247153 53254413 51561667 51568931 NC_060935.1 CM021578.2 97.99 True relocation, inconsistency = -1674330 51584058 51593189 51572906 51582037 NC_060935.1 CM021578.2 99.24 True relocation, inconsistency = 776679 52379458 52383357 51591627 51595527 NC_060935.1 CM021578.2 98.46 True relocation, inconsistency = 1620303 54003661 54014764 51595528 51606630 NC_060935.1 CM021578.2 97.68 True relocation, inconsistency = -1478730 52536035 52541205 51606631 51611803 NC_060935.1 CM021578.2 98.27 True relocation, inconsistency = -918251 51622955 51768331 51611804 51757174 NC_060935.1 CM021578.2 99.88 True relocation, inconsistency = 1185294 52982562 52986788 51786111 51790340 NC_060935.1 CM021578.2 98.01 True relocation, inconsistency = 399762 53386551 53393227 51790341 51797021 NC_060935.1 CM021578.2 98.13 True relocation, inconsistency = 782168 54180755 54188477 51802381 51810106 NC_060935.1 CM021578.2 98.1 True relocation, inconsistency = 66284 54254762 54257964 51810107 51813310 NC_060935.1 CM021578.2 97.74 True relocation, inconsistency = -2774156 51487008 51494369 51816510 51823873 NC_060935.1 CM021578.2 98.22 True relocation, inconsistency = 1402884 52897254 52904354 51823874 51830977 NC_060935.1 CM021578.2 98.07 True relocation, inconsistency = -1016331 51888024 51945464 51830978 51888416 NC_060935.1 CM021578.2 99.77 True relocation, inconsistency = -285244 51660221 51666428 51888417 51894623 NC_060935.1 CM021578.2 98.49 True relocation, inconsistency = 2405317 54071746 54075026 51894624 51897907 NC_060935.1 CM021578.2 98.13 True relocation, inconsistency = -25499 54069683 54075029 51918063 51923409 NC_060935.1 CM021578.2 98.5 True relocation, inconsistency = -2094574 51998704 52021031 51941658 51963985 NC_060935.1 CM021578.2 99.81 True relocation, inconsistency = 656808 52680704 52685500 51966850 51971646 NC_060935.1 CM021578.2 98.71 True relocation, inconsistency = -447705 52237796 52248648 51971647 51982501 NC_060935.1 CM021578.2 98.54 True relocation, inconsistency = -11898 52236751 52241958 51982502 51987708 NC_060935.1 CM021578.2 98.44 True local misassembly 52240259 52249038 51987709 51996489 NC_060935.1 CM021578.2 98.35 True relocation, inconsistency = -321286 51927753 51933859 51996490 52002599 NC_060935.1 CM021578.2 98.02 True local misassembly 51927060 51934375 52002600 52009919 NC_060935.1 CM021578.2 98.13 True relocation, inconsistency = -476642 51457734 51458807 52009920 52010993 NC_060935.1 CM021578.2 98.04 True relocation, inconsistency = 415452 51874260 51881259 52010994 52017993 NC_060935.1 CM021578.2 97.9 True relocation, inconsistency = -649823 51231437 51234836 52017994 52021393 NC_060935.1 CM021578.2 98.02 True local misassembly 51228888 51239830 52021394 52032335 NC_060935.1 CM021578.2 98.04 True local misassembly 51235581 51237748 52032336 52034503 NC_060935.1 CM021578.2 97.87 True relocation, inconsistency = -11048 51227182 51237667 52034985 52045471 NC_060935.1 CM021578.2 97.92 True relocation, inconsistency = 134942 51372610 51384606 52045472 52057471 NC_060935.1 CM021578.2 98.01 True relocation, inconsistency = -11046 51373561 51377040 52057472 52060949 NC_060935.1 CM021578.2 97.68 True local misassembly 51378740 51385761 52060950 52067970 NC_060935.1 CM021578.2 97.69 True relocation, inconsistency = 2586504 53972266 53977472 52067971 52073177 NC_060935.1 CM021578.2 97.5 True relocation, inconsistency = -968614 53009634 53012072 52073953 52076391 NC_060935.1 CM021578.2 98.34 True relocation, inconsistency = -853798 52158275 52167579 52076392 52085698 NC_060935.1 CM021578.2 98.01 True relocation, inconsistency = -538018 51629562 51637873 52085699 52094006 NC_060935.1 CM021578.2 97.95 True relocation, inconsistency = 2118229 53756103 53762142 52094007 52100048 NC_060935.1 CM021578.2 98.04 True relocation, inconsistency = -768048 52994095 53001595 52100049 52107545 NC_060935.1 CM021578.2 97.51 True relocation, inconsistency = -1124261 51877335 51879977 52107546 52110187 NC_060935.1 CM021578.2 97.99 True relocation, inconsistency = 859924 52739920 52743319 52110206 52113604 NC_060935.1 CM021578.2 97.78 True relocation, inconsistency = -1392645 51350675 51356520 52113605 52119449 NC_060935.1 CM021578.2 97.78 True local misassembly 51363318 51373457 52119450 52129594 NC_060935.1 CM021578.2 97.89 True local misassembly 51369210 51370299 52129595 52130685 NC_060935.1 CM021578.2 97.83 True relocation, inconsistency = 435150 51805450 51815039 52130686 52140275 NC_060935.1 CM021578.2 98.34 True relocation, inconsistency = 515751 52330791 52333380 52140276 52142865 NC_060935.1 CM021578.2 98.4 True local misassembly 52328281 52337063 52142866 52151646 NC_060935.1 CM021578.2 98.2 True relocation, inconsistency = -520000 51817644 51826746 52152227 52161327 NC_060935.1 CM021578.2 98.0 True relocation, inconsistency = 525099 52351846 52359107 52161328 52168586 NC_060935.1 CM021578.2 98.33 True relocation, inconsistency = 1588852 53948073 53953229 52168700 52173856 NC_060935.1 CM021578.2 97.7 True relocation, inconsistency = -2757135 51196095 51202764 52173857 52180529 NC_060935.1 CM021578.2 98.29 True relocation, inconsistency = 2175543 53382185 53386954 52184407 52189176 NC_060935.1 CM021578.2 98.09 True relocation, inconsistency = -2193389 51193566 51201083 52189177 52196698 NC_060935.1 CM021578.2 98.25 True relocation, inconsistency = 1136836 52339621 52348022 52198400 52206802 NC_060935.1 CM021578.2 98.94 True relocation, inconsistency = -636279 51716798 51724275 52211857 52219334 NC_060935.1 CM021578.2 98.3 True relocation, inconsistency = 365148 52089424 52092416 52219335 52222326 NC_060935.1 CM021578.2 98.52 True relocation, inconsistency = -898851 51193566 51202764 52222327 52231529 NC_060935.1 CM021578.2 98.17 True local misassembly 51199366 51202764 52231530 52234929 NC_060935.1 CM021578.2 98.28 True relocation, inconsistency = 1152135 52358927 52366303 52238957 52246333 NC_060935.1 CM021578.2 99.42 True indel: stretch of mismatches 52366304 52638245 52246334 52518275 NC_060935.1 CM021578.2 99.94 True relocation, inconsistency = -296257 52342631 52348012 52518918 52524299 NC_060935.1 CM021578.2 98.76 True relocation, inconsistency = -1277915 51070972 51072497 52525174 52526699 NC_060935.1 CM021578.2 98.27 True relocation, inconsistency = 1115240 52187738 52194593 52526700 52533555 NC_060935.1 CM021578.2 98.25 True relocation, inconsistency = 458927 52653637 53834655 52533672 53714687 NC_060935.1 CM021578.2 99.92 True indel: stretch of mismatches 53834656 53845983 53714688 53726016 NC_060935.1 CM021578.2 99.16 True indel: stretch of mismatches 53845984 54113358 53726017 53993366 NC_060935.1 CM021578.2 99.84 True local misassembly 54133419 54371571 54013430 54251585 NC_060935.1 CM021578.2 99.78 True local misassembly 54382260 54396444 54262445 54276627 NC_060935.1 CM021578.2 99.3 True relocation, inconsistency = 9350 54405795 54408057 54276628 54278890 NC_060935.1 CM021578.2 98.93 True relocation, inconsistency = -9350 54398708 54413555 54278891 54293738 NC_060935.1 CM021578.2 99.04 True local misassembly 54414802 54444385 54295151 54324730 NC_060935.1 CM021578.2 98.83 True local misassembly 54445015 54446742 54325021 54326745 NC_060935.1 CM021578.2 95.89 True relocation, inconsistency = -3406382 51042520 51043088 54328905 54329473 NC_060935.1 CM021578.2 97.54 True local misassembly 51049297 51049818 54330587 54331108 NC_060935.1 CM021578.2 96.36 True relocation, inconsistency = 3391246 54445015 54446475 54335059 54336519 NC_060935.1 CM021578.2 95.89 True local misassembly 54447747 54449606 54337451 54339310 NC_060935.1 CM021578.2 96.45 True local misassembly 54453304 54473826 54343341 54363863 NC_060935.1 CM021578.2 97.95 True relocation, inconsistency = -33935 54439892 54444385 54363864 54368358 NC_060935.1 CM021578.2 97.62 True local misassembly 54445015 54446467 54368649 54370100 NC_060935.1 CM021578.2 96.01 True fake: not a misassembly (possible transposable element) 51049093 51049818 54370101 54370824 NC_060935.1 CM021578.2 95.09 True fake: not a misassembly (possible transposable element) 54448957 54450096 54370887 54372027 NC_060935.1 CM021578.2 95.44 True local misassembly 54445015 54446467 54372562 54374013 NC_060935.1 CM021578.2 95.94 True fake: not a misassembly (possible transposable element) 51053543 51054064 54374215 54374736 NC_060935.1 CM021578.2 96.17 True fake: not a misassembly (possible transposable element) 54449240 54450311 54376445 54377517 NC_060935.1 CM021578.2 96.27 True local misassembly 54445015 54446475 54378687 54380147 NC_060935.1 CM021578.2 95.82 True local misassembly 54447747 54449606 54381079 54382938 NC_060935.1 CM021578.2 96.45 True local misassembly 54453304 54469630 54386969 54403293 NC_060935.1 CM021578.2 98.09 True relocation, inconsistency = -18769 54450862 54473724 54403294 54425807 NC_060935.1 CM021578.2 97.04 True relocation, inconsistency = -22863 54450862 54473951 54425808 54448549 NC_060935.1 CM021578.2 96.99 True indel: indel (<= 5bp) 54474082 54692326 54448684 54667119 NC_060935.1 CM021578.2 99.67 True relocation, inconsistency = 21803 54714130 54875465 54667120 54828440 NC_060935.1 CM021578.2 99.66 True local misassembly 54872546 54875436 54828441 54831331 NC_060935.1 CM021578.2 99.69 True local misassembly 54872517 55055447 54831332 55014604 NC_060935.1 CM021578.2 99.56 True local misassembly 55062327 55186560 55014605 55138839 NC_060935.1 CM021578.2 99.85 True local misassembly 55185024 56314200 55138840 56269019 NC_060935.1 CM021578.2 99.71 True relocation, inconsistency = -7605 56314010 57969801 56276434 57932314 NC_060935.1 CM021578.2 99.66 True indel: indel (> 5bp) 57969828 61051291 57932353 61015023 NC_060935.1 CM021578.2 99.79 True local misassembly 61052089 61153753 61015207 61117172 NC_060935.1 CM021578.2 99.39 True relocation, inconsistency = 56307 61210061 65509967 61117173 65416821 NC_060935.1 CM021578.2 99.83 True indel: indel (> 5bp) 65510334 66245314 65417147 66152709 NC_060935.1 CM021578.2 99.6 True fake: not a misassembly (possible transposable element) 66245315 66246108 66153904 66153111 NC_060935.1 CM021578.2 100.0 True fake: not a misassembly (possible transposable element) 66246109 68649451 66153921 68557680 NC_060935.1 CM021578.2 99.65 True local misassembly 68650667 72128050 68558689 72038354 NC_060935.1 CM021578.2 99.77 True indel: indel (> 5bp) 72128101 73179262 72038355 73090028 NC_060935.1 CM021578.2 99.79 True local misassembly 73180795 76649299 73091529 76559718 NC_060935.1 CM021578.2 99.88 True indel: indel (> 5bp) 76649351 78611497 76559806 78521406 NC_060935.1 CM021578.2 99.84 True indel: stretch of mismatches 78611498 86110939 78521407 86019894 NC_060935.1 CM021578.2 99.81 True local misassembly 86115192 86486408 86019895 86391271 NC_060935.1 CM021578.2 99.62 True indel: indel (<= 5bp) 86486563 87919241 86391427 87826196 NC_060935.1 CM021578.2 99.53 True indel: indel (> 5bp) 87919594 87920139 87826500 87827045 NC_060935.1 CM021578.2 99.63 True local misassembly 87922870 89828902 87829894 89735864 NC_060935.1 CM021578.2 99.88 True local misassembly 89828916 91068755 89736074 90976977 NC_060935.1 CM021578.2 99.01 True local misassembly 91068827 91136902 90977375 91045736 NC_060935.1 CM021578.2 99.29 True local misassembly 91137281 94150376 91046843 94056649 NC_060935.1 CM021578.2 99.71 True relocation, inconsistency = 73229 94223606 99321435 94056650 99150872 NC_060935.1 CM021578.2 99.6 True local misassembly 99322668 99825974 99150936 99654215 NC_060935.1 CM021578.2 99.77 True local misassembly 99826867 99827729 99654984 99655846 NC_060935.1 CM021578.2 99.65 True local misassembly 99828526 101509368 99656590 101337766 NC_060935.1 CM021578.2 99.82 True indel: indel (> 5bp) 101509446 101705609 101337920 101534645 NC_060935.1 CM021578.2 99.23 True translocation 30162575 30164982 101537053 101534646 NC_060943.1 CM021578.2 98.68 True indel: indel (<= 5bp) 30161795 30162573 101537832 101537054 NC_060943.1 CM021578.2 99.1 True indel: indel (> 5bp) 30160538 30161785 101539080 101537833 NC_060943.1 CM021578.2 98.4 True local misassembly 30157115 30160067 101542174 101539222 NC_060943.1 CM021578.2 98.95 True translocation 101704641 103029223 101542175 102865825 NC_060935.1 CM021578.2 99.77 True indel: indel (> 5bp) 103029374 103619513 102865984 103455652 NC_060935.1 CM021578.2 99.75 True indel: indel (> 5bp) 103619798 107380142 103455943 107215077 NC_060935.1 CM021578.2 99.75 True indel: indel (<= 5bp) 107380260 110940848 107215196 110771825 NC_060935.1 CM021578.2 99.76 True local misassembly 110940949 116144029 110771826 115975980 NC_060935.1 CM021578.2 99.8 True indel: indel (> 5bp) 116144087 119670246 115976110 119502406 NC_060935.1 CM021578.2 99.78 True local misassembly 119670801 119766792 119502859 119598490 NC_060935.1 CM021578.2 99.5 True indel: indel (> 5bp) 119766892 120290563 119598636 120121949 NC_060935.1 CM021578.2 99.73 True local misassembly 120290402 121852371 120122396 121685020 NC_060935.1 CM021578.2 99.84 True indel: stretch of mismatches 121852401 128204710 121685050 128037299 NC_060935.1 CM021578.2 99.71 True indel: indel (> 5bp) 128204746 130127397 128037355 129959520 NC_060935.1 CM021578.2 99.67 True local misassembly 130127379 131716490 129960002 131550848 NC_060935.1 CM021578.2 99.66 True indel: indel (<= 5bp) 131716736 133181173 131551096 133015745 NC_060935.1 CM021578.2 99.63 True local misassembly 133181474 134482240 133016134 134318949 NC_060935.1 CM021578.2 99.61 True local misassembly 134482970 134871849 134319447 134705831 NC_060935.1 CM021578.2 98.95 True local misassembly 134872863 135088105 134706301 134920657 NC_060935.1 CM021578.2 98.07 True local misassembly 135088524 135125192 134920855 134956917 NC_060935.1 CM021578.2 97.36 True CONTIG CM021578.2 134959473 misassembled 1 95970 1 95992 NC_060936.1 CM021579.2 99.88 True local misassembly 96384 100389 96239 100244 NC_060936.1 CM021579.2 99.83 True indel: indel (<= 5bp) 100390 102603 100246 102459 NC_060936.1 CM021579.2 99.91 True indel: indel (<= 5bp) 102604 118949 102461 118806 NC_060936.1 CM021579.2 99.75 True indel: indel (<= 5bp) 118950 121504 118808 121362 NC_060936.1 CM021579.2 99.88 True indel: indel (> 5bp) 121519 123973 121363 123817 NC_060936.1 CM021579.2 100.0 True indel: indel (> 5bp) 124030 136780 123818 136568 NC_060936.1 CM021579.2 99.97 True indel: indel (<= 5bp) 136785 155014 136569 154798 NC_060936.1 CM021579.2 99.93 True indel: indel (<= 5bp) 155015 156034 154800 155819 NC_060936.1 CM021579.2 99.41 True local misassembly 159504 163703 157536 161735 NC_060936.1 CM021579.2 99.76 True indel: indel (<= 5bp) 163708 173355 161736 171383 NC_060936.1 CM021579.2 99.87 True local misassembly 173366 174330 171501 172465 NC_060936.1 CM021579.2 99.79 True indel: indel (<= 5bp) 174331 174863 172468 173000 NC_060936.1 CM021579.2 100.0 True indel: indel (<= 5bp) 174865 176576 173001 174712 NC_060936.1 CM021579.2 99.88 True indel: indel (<= 5bp) 176579 177350 174713 175484 NC_060936.1 CM021579.2 99.74 True indel: indel (<= 5bp) 177351 178296 175489 176434 NC_060936.1 CM021579.2 100.0 True indel: indel (> 5bp) 178574 179089 176706 177221 NC_060936.1 CM021579.2 100.0 True local misassembly 184792 185834 177222 178264 NC_060936.1 CM021579.2 99.9 True indel: indel (<= 5bp) 185835 187583 178266 180014 NC_060936.1 CM021579.2 99.71 True indel: indel (<= 5bp) 187587 188794 180015 181222 NC_060936.1 CM021579.2 99.92 True indel: indel (> 5bp) 188857 193043 181223 185409 NC_060936.1 CM021579.2 99.86 True local misassembly 194129 413187 186571 405761 NC_060936.1 CM021579.2 99.67 True indel: indel (<= 5bp) 413190 536305 405762 530375 NC_060936.1 CM021579.2 98.1 True indel: indel (> 5bp) 536667 1080542 530713 1080596 NC_060936.1 CM021579.2 98.33 True local misassembly 1084385 1569028 1080779 1565124 NC_060936.1 CM021579.2 99.68 True local misassembly 1569502 5645898 1565207 5643572 NC_060936.1 CM021579.2 99.68 True indel: stretch of mismatches 5646011 5936055 5643685 5934040 NC_060936.1 CM021579.2 99.61 True indel: indel (> 5bp) 5936138 6146871 5934134 6147554 NC_060936.1 CM021579.2 98.48 True local misassembly 6146793 6439887 6150165 6443150 NC_060936.1 CM021579.2 99.78 True indel: indel (> 5bp) 6439996 6919671 6443242 6923912 NC_060936.1 CM021579.2 99.51 True indel: indel (> 5bp) 6920217 9385293 6924375 9387787 NC_060936.1 CM021579.2 99.68 True local misassembly 9389344 10316685 9394136 10321330 NC_060936.1 CM021579.2 99.79 True indel: indel (<= 5bp) 10316732 10319126 10321374 10323764 NC_060936.1 CM021579.2 95.42 True relocation, inconsistency = -15429 10303698 10304429 10323765 10324496 NC_060936.1 CM021579.2 98.29 True local misassembly 10305000 10312393 10325075 10332451 NC_060936.1 CM021579.2 97.99 True indel: indel (> 5bp) 10312539 11743681 10332619 11763695 NC_060936.1 CM021579.2 99.87 True local misassembly 11743822 12247676 11763933 12267402 NC_060936.1 CM021579.2 99.7 True relocation, inconsistency = 11015 12258736 12797439 12267447 12806105 NC_060936.1 CM021579.2 99.84 True indel: indel (> 5bp) 12797565 18526617 12806223 18526774 NC_060936.1 CM021579.2 99.67 True indel: indel (> 5bp) 18526645 18748466 18526812 18748399 NC_060936.1 CM021579.2 99.77 True indel: indel (> 5bp) 18748507 21541087 18748416 21540090 NC_060936.1 CM021579.2 99.83 True indel: indel (> 5bp) 21541217 24490151 21540191 24490322 NC_060936.1 CM021579.2 99.8 True indel: indel (> 5bp) 24490181 26657336 24490346 26657537 NC_060936.1 CM021579.2 99.73 True local misassembly 26657328 27507876 26657942 27508466 NC_060936.1 CM021579.2 99.84 True indel: indel (> 5bp) 27507939 30997004 27508521 30997327 NC_060936.1 CM021579.2 99.74 True indel: indel (> 5bp) 30997121 31711925 30997373 31714582 NC_060936.1 CM021579.2 99.4 True local misassembly 31713028 31993865 31714583 31994899 NC_060936.1 CM021579.2 99.5 True indel: indel (> 5bp) 31993946 32982120 31994971 32983842 NC_060936.1 CM021579.2 99.53 True local misassembly 32982799 33019537 32984521 33021250 NC_060936.1 CM021579.2 99.68 True translocation 50287598 50288339 33023120 33023861 NC_060947.1 CM021579.2 97.04 True translocation 33019532 34592512 33032057 34579322 NC_060936.1 CM021579.2 97.52 True indel: indel (<= 5bp) 34592843 34600694 34579654 34587505 NC_060936.1 CM021579.2 99.15 True indel: indel (<= 5bp) 34600871 34606703 34587683 34593515 NC_060936.1 CM021579.2 99.31 True relocation, inconsistency = -12230 34594474 34595971 34593516 34595013 NC_060936.1 CM021579.2 97.53 True indel: stretch of mismatches 34596083 34598531 34595125 34597574 NC_060936.1 CM021579.2 98.78 True local misassembly 34610302 34611399 34602891 34603988 NC_060936.1 CM021579.2 97.27 True local misassembly 34619906 34629770 34606724 34616592 NC_060936.1 CM021579.2 98.63 True local misassembly 34631979 34637639 34618803 34624462 NC_060936.1 CM021579.2 97.79 True local misassembly 34638524 34654035 34625347 34640859 NC_060936.1 CM021579.2 98.5 True indel: stretch of mismatches 34654350 34656486 34641174 34643315 NC_060936.1 CM021579.2 96.69 True local misassembly 34657326 34661437 34644156 34648264 NC_060936.1 CM021579.2 97.13 True indel: stretch of mismatches 34661540 34753967 34648367 34740793 NC_060936.1 CM021579.2 99.49 True relocation, inconsistency = 23780 34778151 34786502 34741197 34749548 NC_060936.1 CM021579.2 97.75 True relocation, inconsistency = 130101 34917059 34919869 34750004 34752814 NC_060936.1 CM021579.2 99.57 True relocation, inconsistency = -153882 34770683 34774163 34757510 34760990 NC_060936.1 CM021579.2 98.05 True indel: stretch of mismatches 34774552 34783312 34761379 34770139 NC_060936.1 CM021579.2 99.73 True relocation, inconsistency = -13929 34771007 34773983 34771763 34774739 NC_060936.1 CM021579.2 97.95 True indel: stretch of mismatches 34774404 34777380 34775160 34778136 NC_060936.1 CM021579.2 98.02 True relocation, inconsistency = 891841 35686919 35690323 34795834 34799240 NC_060936.1 CM021579.2 99.21 True relocation, inconsistency = 1499260 37193718 37194634 34803375 34804291 NC_060936.1 CM021579.2 97.16 True indel: indel (<= 5bp) 37195078 37195986 34804734 34805642 NC_060936.1 CM021579.2 97.69 True indel: indel (<= 5bp) 37196438 37197407 34806093 34807062 NC_060936.1 CM021579.2 97.53 True relocation, inconsistency = -1449678 35747998 35752998 34807331 34812333 NC_060936.1 CM021579.2 99.08 True relocation, inconsistency = -1070507 34682995 34687303 34812837 34817147 NC_060936.1 CM021579.2 96.19 True relocation, inconsistency = 946541 35633845 35641856 34817148 34825153 NC_060936.1 CM021579.2 98.33 True local misassembly 35635065 35640929 34825154 34831010 NC_060936.1 CM021579.2 98.68 True relocation, inconsistency = -501917 35139013 35146567 34831011 34838557 NC_060936.1 CM021579.2 98.99 True relocation, inconsistency = -200380 34946188 34953907 34838558 34846265 NC_060936.1 CM021579.2 98.85 True relocation, inconsistency = -93074 34860834 34863225 34846266 34848657 NC_060936.1 CM021579.2 99.07 True local misassembly 34859149 34864780 34848658 34854281 NC_060936.1 CM021579.2 99.13 True local misassembly 34859345 34863889 34854282 34858822 NC_060936.1 CM021579.2 99.13 True relocation, inconsistency = 8153 34872043 34883115 34858823 34869892 NC_060936.1 CM021579.2 99.47 True relocation, inconsistency = 95792 34978908 34981081 34869893 34872066 NC_060936.1 CM021579.2 99.09 True relocation, inconsistency = 695160 35677070 35680474 34872895 34876301 NC_060936.1 CM021579.2 99.21 True relocation, inconsistency = -894903 34797468 34803025 34888198 34893756 NC_060936.1 CM021579.2 99.14 True local misassembly 34820505 34828765 34916673 34924934 NC_060936.1 CM021579.2 99.56 True relocation, inconsistency = 867718 35696484 35699688 34924935 34928141 NC_060936.1 CM021579.2 98.72 True relocation, inconsistency = -566452 35133237 35134595 34928142 34929493 NC_060936.1 CM021579.2 99.07 True local misassembly 35133237 35138935 34929494 34935192 NC_060936.1 CM021579.2 99.3 True relocation, inconsistency = 542337 35682455 35684880 34936375 34938801 NC_060936.1 CM021579.2 99.26 True relocation, inconsistency = 36680 35721561 35724965 34938802 34942208 NC_060936.1 CM021579.2 99.27 True relocation, inconsistency = -780413 34946188 34953907 34943844 34951563 NC_060936.1 CM021579.2 99.25 True relocation, inconsistency = -109378 34844530 34848606 34951564 34955638 NC_060936.1 CM021579.2 99.05 True relocation, inconsistency = 324018 35172787 35177197 34955801 34960211 NC_060936.1 CM021579.2 99.06 True relocation, inconsistency = -278168 34899030 34901685 34960212 34962867 NC_060936.1 CM021579.2 99.03 True relocation, inconsistency = 74394 34976080 34992436 34962868 34979224 NC_060936.1 CM021579.2 99.46 True relocation, inconsistency = -261568 34730869 34732790 34979225 34981141 NC_060936.1 CM021579.2 97.5 True relocation, inconsistency = 901365 35634156 35640945 34981142 34987932 NC_060936.1 CM021579.2 98.4 True local misassembly 35634156 35641856 34987933 34995637 NC_060936.1 CM021579.2 99.01 True relocation, inconsistency = -633019 35027264 35055708 35014064 35042507 NC_060936.1 CM021579.2 99.9 True local misassembly 35102678 35113028 35089495 35099847 NC_060936.1 CM021579.2 99.71 True relocation, inconsistency = 1983519 37136672 37137643 35139972 35140943 NC_060936.1 CM021579.2 97.53 True local misassembly 37136672 37137643 35141331 35142302 NC_060936.1 CM021579.2 97.33 True indel: indel (<= 5bp) 37138032 37139003 35142690 35143661 NC_060936.1 CM021579.2 96.4 True local misassembly 37140750 37141739 35144049 35145038 NC_060936.1 CM021579.2 96.97 True local misassembly 37140750 37141739 35145408 35146397 NC_060936.1 CM021579.2 96.77 True relocation, inconsistency = -1411990 35730392 35733796 35147040 35150446 NC_060936.1 CM021579.2 99.03 True relocation, inconsistency = -98839 35636259 35641856 35151748 35157344 NC_060936.1 CM021579.2 98.98 True relocation, inconsistency = 1525433 37167290 37168216 35157345 35158271 NC_060936.1 CM021579.2 96.4 True indel: indel (<= 5bp) 37168605 37169428 35158659 35159482 NC_060936.1 CM021579.2 97.33 True local misassembly 37169963 37170952 35160018 35161007 NC_060936.1 CM021579.2 96.67 True local misassembly 37165885 37166856 35161377 35162348 NC_060936.1 CM021579.2 97.33 True indel: indel (<= 5bp) 37167245 37168216 35162736 35163707 NC_060936.1 CM021579.2 96.4 True local misassembly 37165885 37166856 35164095 35165066 NC_060936.1 CM021579.2 97.33 True indel: indel (<= 5bp) 37167245 37168216 35165454 35166425 NC_060936.1 CM021579.2 96.4 True local misassembly 37169963 37170952 35166813 35167802 NC_060936.1 CM021579.2 96.67 True local misassembly 37169963 37170952 35168172 35169161 NC_060936.1 CM021579.2 96.67 True local misassembly 37169963 37170952 35169531 35170520 NC_060936.1 CM021579.2 96.67 True local misassembly 37169963 37170952 35170890 35171879 NC_060936.1 CM021579.2 96.67 True local misassembly 37172682 37173598 35172249 35173165 NC_060936.1 CM021579.2 97.71 True local misassembly 37172682 37173598 35173608 35174524 NC_060936.1 CM021579.2 97.71 True relocation, inconsistency = -1126099 36047863 36050084 35174888 35177109 NC_060936.1 CM021579.2 98.6 True relocation, inconsistency = -859832 35198119 35212004 35184976 35198863 NC_060936.1 CM021579.2 99.59 True relocation, inconsistency = -568236 34644580 34649732 35199675 35204828 NC_060936.1 CM021579.2 96.78 True relocation, inconsistency = 2368125 37024570 37025848 35211541 35212819 NC_060936.1 CM021579.2 98.59 True relocation, inconsistency = 15597 37042130 37044662 35213504 35216040 NC_060936.1 CM021579.2 98.46 True relocation, inconsistency = 144268 37196438 37199120 35223548 35226234 NC_060936.1 CM021579.2 96.54 True local misassembly 37200911 37201744 35228023 35228860 NC_060936.1 CM021579.2 95.82 True relocation, inconsistency = -60778 37145591 37146440 35233485 35234335 NC_060936.1 CM021579.2 98.47 True local misassembly 37146868 37147824 35236121 35237078 NC_060936.1 CM021579.2 97.6 True local misassembly 37144829 37145598 35237479 35238248 NC_060936.1 CM021579.2 98.18 True relocation, inconsistency = -2444117 34701620 34702960 35238387 35239730 NC_060936.1 CM021579.2 97.62 True relocation, inconsistency = 9510 34712486 34713334 35239746 35240594 NC_060936.1 CM021579.2 98.07 True relocation, inconsistency = 540375 35253710 35272614 35240595 35259501 NC_060936.1 CM021579.2 99.59 True relocation, inconsistency = 1926142 37199866 37200557 35260611 35261302 NC_060936.1 CM021579.2 97.83 True relocation, inconsistency = -1526777 35682455 35685557 35269977 35273081 NC_060936.1 CM021579.2 99.29 True relocation, inconsistency = 59435 35747998 35752755 35276087 35280846 NC_060936.1 CM021579.2 99.13 True relocation, inconsistency = -117854 35634902 35636069 35280847 35282015 NC_060936.1 CM021579.2 98.79 True relocation, inconsistency = -340954 35295116 35324548 35282016 35311450 NC_060936.1 CM021579.2 99.88 True local misassembly 35325680 35333663 35312582 35320567 NC_060936.1 CM021579.2 99.6 True indel: stretch of mismatches 35333664 35351849 35320568 35338756 NC_060936.1 CM021579.2 99.82 True fake: not a misassembly (possible transposable element) 35069726 35071593 35348690 35350559 NC_060936.1 CM021579.2 98.81 True fake: not a misassembly (possible transposable element) 35363648 35405403 35350560 35392315 NC_060936.1 CM021579.2 99.9 True relocation, inconsistency = -209861 35195543 35196431 35392316 35393204 NC_060936.1 CM021579.2 98.75 True relocation, inconsistency = 1889851 37086283 37091499 35393205 35398427 NC_060936.1 CM021579.2 99.04 True relocation, inconsistency = -1957084 35148196 35150511 35412208 35414522 NC_060936.1 CM021579.2 98.33 True relocation, inconsistency = 277098 35427610 35446072 35414523 35432988 NC_060936.1 CM021579.2 99.68 True relocation, inconsistency = 1642911 37119091 37119623 35463096 35463628 NC_060936.1 CM021579.2 98.12 True local misassembly 37119624 37121603 35464309 35466288 NC_060936.1 CM021579.2 98.41 True relocation, inconsistency = -91615 37029989 37032117 35466289 35468417 NC_060936.1 CM021579.2 98.22 True relocation, inconsistency = 81425 37116243 37117249 35471118 35472126 NC_060936.1 CM021579.2 96.83 True relocation, inconsistency = -52998 37119601 37121381 35527476 35529256 NC_060936.1 CM021579.2 98.14 True relocation, inconsistency = -1579079 35542303 35600113 35529257 35587057 NC_060936.1 CM021579.2 99.78 True relocation, inconsistency = 1285899 36915652 36918395 35616697 35619441 NC_060936.1 CM021579.2 98.14 True relocation, inconsistency = 174004 37092700 37095474 35619742 35622518 NC_060936.1 CM021579.2 97.98 True relocation, inconsistency = -1974396 35131278 35135704 35632718 35637144 NC_060936.1 CM021579.2 98.76 True relocation, inconsistency = 514490 35650579 35675589 35637529 35662526 NC_060936.1 CM021579.2 99.58 True fake: not a misassembly (possible transposable element) 37095754 37097240 35662527 35664013 NC_060936.1 CM021579.2 96.9 True fake: not a misassembly (possible transposable element) 35685511 35709729 35672433 35696654 NC_060936.1 CM021579.2 99.48 True relocation, inconsistency = 1385183 37095262 37095768 35697004 35697506 NC_060936.1 CM021579.2 96.8 True local misassembly 37092718 37097336 35697507 35702109 NC_060936.1 CM021579.2 96.58 True relocation, inconsistency = -16932 37081196 37082470 35702901 35704175 NC_060936.1 CM021579.2 98.59 True relocation, inconsistency = -1365174 35717440 35739561 35704319 35726438 NC_060936.1 CM021579.2 99.58 True local misassembly 35746988 35758344 35733862 35745218 NC_060936.1 CM021579.2 99.4 True relocation, inconsistency = 586471 36344816 36352019 35745219 35752425 NC_060936.1 CM021579.2 98.35 True relocation, inconsistency = 795633 37150947 37154200 35755720 35758973 NC_060936.1 CM021579.2 98.19 True relocation, inconsistency = -2447850 34706369 34712312 35758992 35764938 NC_060936.1 CM021579.2 97.93 True relocation, inconsistency = 2456007 37168600 37169428 35765219 35766047 NC_060936.1 CM021579.2 98.31 True local misassembly 37169963 37170895 35766583 35767515 NC_060936.1 CM021579.2 97.86 True local misassembly 37174042 37175653 35770656 35772268 NC_060936.1 CM021579.2 97.27 True indel: indel (<= 5bp) 37176081 37177829 35772695 35774447 NC_060936.1 CM021579.2 97.49 True relocation, inconsistency = -446908 36731525 36734925 35775051 35778458 NC_060936.1 CM021579.2 98.53 True relocation, inconsistency = 71310 36806236 36806809 35778459 35779034 NC_060936.1 CM021579.2 97.93 True relocation, inconsistency = -1014654 35792156 35828867 35779035 35815748 NC_060936.1 CM021579.2 99.64 True relocation, inconsistency = 26818 35855686 35859587 35815749 35819650 NC_060936.1 CM021579.2 98.67 True relocation, inconsistency = 606509 36466545 36469296 35820099 35822849 NC_060936.1 CM021579.2 98.76 True relocation, inconsistency = -465255 36004489 36006393 35823297 35825203 NC_060936.1 CM021579.2 98.67 True relocation, inconsistency = -311375 35695019 35698923 35825204 35829111 NC_060936.1 CM021579.2 98.92 True relocation, inconsistency = 950500 36649424 36657437 35829112 35837131 NC_060936.1 CM021579.2 98.95 True relocation, inconsistency = -826212 35831302 35833375 35837208 35839281 NC_060936.1 CM021579.2 99.04 True relocation, inconsistency = 1032275 36884948 36887273 35858579 35860905 NC_060936.1 CM021579.2 98.15 True relocation, inconsistency = -2187331 34700352 34701673 35861315 35862636 NC_060936.1 CM021579.2 97.96 True local misassembly 34704129 34708521 35864755 35869148 NC_060936.1 CM021579.2 98.2 True relocation, inconsistency = 1173714 35882236 35900821 35869149 35887734 NC_060936.1 CM021579.2 99.54 True relocation, inconsistency = 651005 36551827 36552838 35887735 35888746 NC_060936.1 CM021579.2 98.22 True relocation, inconsistency = 540974 37095262 37095768 35890196 35890698 NC_060936.1 CM021579.2 96.85 True local misassembly 37092718 37096219 35890699 35894186 NC_060936.1 CM021579.2 96.58 True relocation, inconsistency = -14225 37083986 37091572 35896178 35903773 NC_060936.1 CM021579.2 98.32 True relocation, inconsistency = -15583 37075990 37077528 35903774 35905312 NC_060936.1 CM021579.2 98.9 True relocation, inconsistency = -1159077 35918636 35931823 35905497 35918678 NC_060936.1 CM021579.2 99.26 True relocation, inconsistency = -173517 35758307 35761241 35918679 35921612 NC_060936.1 CM021579.2 98.53 True local misassembly 35762212 35765710 35921905 35925402 NC_060936.1 CM021579.2 98.14 True indel: indel (<= 5bp) 35765964 35769480 35925657 35929176 NC_060936.1 CM021579.2 98.58 True relocation, inconsistency = 1106979 36883953 36885923 35936670 35938641 NC_060936.1 CM021579.2 97.82 True local misassembly 36884948 36887273 35942421 35944747 NC_060936.1 CM021579.2 98.15 True relocation, inconsistency = 309071 37197794 37198867 35946197 35947270 NC_060936.1 CM021579.2 97.77 True relocation, inconsistency = -319263 36884948 36887273 35952614 35954940 NC_060936.1 CM021579.2 98.07 True relocation, inconsistency = -403377 36498210 36499163 35969254 35970207 NC_060936.1 CM021579.2 98.82 True relocation, inconsistency = 66899 36566063 36569646 35970208 35973794 NC_060936.1 CM021579.2 98.83 True relocation, inconsistency = 548761 37118611 37121470 35973998 35976857 NC_060936.1 CM021579.2 98.15 True relocation, inconsistency = -1928517 35193432 35196823 35977336 35980729 NC_060936.1 CM021579.2 98.08 True relocation, inconsistency = 1365834 36562658 36565215 35980730 35983289 NC_060936.1 CM021579.2 98.09 True relocation, inconsistency = -568833 35996744 36036170 35983651 36023077 NC_060936.1 CM021579.2 99.79 True local misassembly 36044430 36064269 36031340 36051179 NC_060936.1 CM021579.2 99.34 True relocation, inconsistency = -1277596 34786674 34787296 36051180 36051802 NC_060936.1 CM021579.2 98.11 True relocation, inconsistency = 2342888 37130213 37133581 36051831 36055199 NC_060936.1 CM021579.2 98.19 True relocation, inconsistency = -26829 37109165 37110113 36057612 36058561 NC_060936.1 CM021579.2 96.64 True relocation, inconsistency = -2405736 34705407 34711660 36059591 36065846 NC_060936.1 CM021579.2 97.71 True relocation, inconsistency = 1460665 36172326 36180246 36065847 36073766 NC_060936.1 CM021579.2 98.55 True relocation, inconsistency = -43810 36136437 36139572 36073767 36076902 NC_060936.1 CM021579.2 97.69 True relocation, inconsistency = 967825 37108505 37109084 36078010 36078590 NC_060936.1 CM021579.2 98.62 True indel: indel (<= 5bp) 37109518 37110460 36079023 36079967 NC_060936.1 CM021579.2 97.88 True relocation, inconsistency = -1038466 36073719 36078047 36081692 36086021 NC_060936.1 CM021579.2 99.12 True relocation, inconsistency = 864123 36942278 36943617 36086129 36087469 NC_060936.1 CM021579.2 97.99 True relocation, inconsistency = 167885 37117665 37118296 36093632 36094265 NC_060936.1 CM021579.2 97.79 True relocation, inconsistency = -9848 37111067 37112005 36096884 36097821 NC_060936.1 CM021579.2 97.66 True relocation, inconsistency = -1001110 36110896 36122569 36097822 36109497 NC_060936.1 CM021579.2 99.49 True relocation, inconsistency = -1374063 34778089 34780061 36139080 36141052 NC_060936.1 CM021579.2 97.42 True fake: not a misassembly (possible transposable element) 37155129 37158682 36141978 36145530 NC_060936.1 CM021579.2 97.69 True fake: not a misassembly (possible transposable element) 34784544 34787823 36145531 36148811 NC_060936.1 CM021579.2 97.8 True relocation, inconsistency = 1374048 36161883 36164802 36148823 36151742 NC_060936.1 CM021579.2 99.22 True relocation, inconsistency = 381375 36546178 36550153 36151743 36155721 NC_060936.1 CM021579.2 97.99 True relocation, inconsistency = 161978 36712132 36714686 36155722 36158273 NC_060936.1 CM021579.2 98.0 True relocation, inconsistency = -1357350 35357938 35360727 36158875 36161666 NC_060936.1 CM021579.2 98.5 True relocation, inconsistency = -635121 34725607 34727507 36161667 36163568 NC_060936.1 CM021579.2 98.32 True relocation, inconsistency = 1449451 36227578 36231306 36214188 36217918 NC_060936.1 CM021579.2 99.38 True fake: not a misassembly (possible transposable element) 34878172 34879477 36237467 36238772 NC_060936.1 CM021579.2 98.82 True fake: not a misassembly (possible transposable element) 36252148 36264557 36238773 36251183 NC_060936.1 CM021579.2 99.37 True relocation, inconsistency = 595924 36860482 36861136 36251184 36251838 NC_060936.1 CM021579.2 97.45 True relocation, inconsistency = 293105 37154242 37156341 36251839 36253938 NC_060936.1 CM021579.2 97.19 True fake: not a misassembly (possible transposable element) 37024981 37025918 36255966 36256903 NC_060936.1 CM021579.2 97.87 True fake: not a misassembly (possible transposable element) 37160803 37162664 36258064 36259925 NC_060936.1 CM021579.2 98.6 True relocation, inconsistency = 34966 37197815 37198746 36260110 36261041 NC_060936.1 CM021579.2 98.28 True relocation, inconsistency = -322987 36876791 36878733 36262073 36264019 NC_060936.1 CM021579.2 97.53 True relocation, inconsistency = 49505 36928381 36932983 36264162 36268776 NC_060936.1 CM021579.2 97.75 True relocation, inconsistency = 230039 37174804 37176470 36280558 36282226 NC_060936.1 CM021579.2 97.48 True relocation, inconsistency = -18688 37158294 37159067 36282738 36283511 NC_060936.1 CM021579.2 98.45 True local misassembly 37159068 37160198 36283851 36284981 NC_060936.1 CM021579.2 98.14 True relocation, inconsistency = -861861 36301665 36328628 36288309 36315272 NC_060936.1 CM021579.2 99.96 True relocation, inconsistency = -1634916 34720993 34723312 36342553 36344872 NC_060936.1 CM021579.2 98.02 True local misassembly 34723652 34724330 36344873 36345551 NC_060936.1 CM021579.2 98.67 True relocation, inconsistency = 2444460 37168894 37169428 36345655 36346189 NC_060936.1 CM021579.2 98.32 True indel: indel (<= 5bp) 37169742 37170375 36346505 36347138 NC_060936.1 CM021579.2 97.0 True local misassembly 37170376 37171677 36347479 36348780 NC_060936.1 CM021579.2 98.08 True local misassembly 37171678 37173303 36349122 36350747 NC_060936.1 CM021579.2 97.91 True local misassembly 37173304 37174730 36351088 36352514 NC_060936.1 CM021579.2 97.9 True local misassembly 37175070 37176225 36352515 36353670 NC_060936.1 CM021579.2 98.53 True indel: indel (<= 5bp) 37176226 37177242 36353672 36354688 NC_060936.1 CM021579.2 97.84 True relocation, inconsistency = 19000 37197673 37198744 36356119 36357194 NC_060936.1 CM021579.2 97.58 True relocation, inconsistency = -828243 36371126 36420832 36357819 36407522 NC_060936.1 CM021579.2 99.85 True indel: stretch of mismatches 36420833 36423815 36407523 36410505 NC_060936.1 CM021579.2 99.32 True indel: stretch of mismatches 36424107 36427175 36410797 36413865 NC_060936.1 CM021579.2 98.99 True local misassembly 36435589 36463570 36422279 36450261 NC_060936.1 CM021579.2 99.83 True fake: not a misassembly (possible transposable element) 35634295 35638072 36464191 36467972 NC_060936.1 CM021579.2 99.01 True fake: not a misassembly (possible transposable element) 36481278 36489671 36467973 36476369 NC_060936.1 CM021579.2 99.52 True relocation, inconsistency = -538575 35953110 35955587 36478383 36480860 NC_060936.1 CM021579.2 98.51 True relocation, inconsistency = 840463 36796398 36797027 36481208 36481838 NC_060936.1 CM021579.2 98.35 True relocation, inconsistency = -301883 36495145 36509078 36481839 36495771 NC_060936.1 CM021579.2 99.17 True fake: not a misassembly (possible transposable element) 36920880 36923830 36495772 36498727 NC_060936.1 CM021579.2 97.86 True fake: not a misassembly (possible transposable element) 36512404 36515092 36499097 36501786 NC_060936.1 CM021579.2 98.4 True local misassembly 36515804 36552995 36502498 36539693 NC_060936.1 CM021579.2 99.83 True relocation, inconsistency = 504977 37058251 37060613 36539972 36542334 NC_060936.1 CM021579.2 98.52 True relocation, inconsistency = -1027973 36033003 36035789 36542697 36545483 NC_060936.1 CM021579.2 98.31 True relocation, inconsistency = 522991 36559405 36603187 36546108 36589893 NC_060936.1 CM021579.2 99.88 True relocation, inconsistency = 254987 36858819 36861645 36590538 36593365 NC_060936.1 CM021579.2 98.09 True relocation, inconsistency = -10521 36851689 36856160 36593930 36598406 NC_060936.1 CM021579.2 98.59 True relocation, inconsistency = -244464 36611986 36619519 36598696 36606232 NC_060936.1 CM021579.2 99.0 True fake: not a misassembly (possible transposable element) 36865680 36868331 36606233 36608885 NC_060936.1 CM021579.2 98.39 True fake: not a misassembly (possible transposable element) 36625107 36629870 36611821 36616585 NC_060936.1 CM021579.2 98.87 True indel: stretch of mismatches 36630048 36647131 36616763 36633849 NC_060936.1 CM021579.2 99.64 True relocation, inconsistency = -847931 35799201 35799865 36633850 36634514 NC_060936.1 CM021579.2 98.77 True relocation, inconsistency = 939255 36764365 36768840 36659759 36664234 NC_060936.1 CM021579.2 99.26 True relocation, inconsistency = 342302 37119054 37122336 36672146 36675428 NC_060936.1 CM021579.2 98.2 True relocation, inconsistency = -575241 36547096 36549249 36675429 36677581 NC_060936.1 CM021579.2 98.49 True relocation, inconsistency = 136161 36692381 36693897 36684552 36686068 NC_060936.1 CM021579.2 99.05 True local misassembly 36699333 36711243 36686069 36697980 NC_060936.1 CM021579.2 99.59 True indel: indel (<= 5bp) 36711409 36712884 36698147 36699622 NC_060936.1 CM021579.2 98.36 True relocation, inconsistency = -1582499 35130386 35135507 36699623 36704744 NC_060936.1 CM021579.2 99.1 True relocation, inconsistency = -396391 34746709 34747319 36712337 36712947 NC_060936.1 CM021579.2 97.87 True relocation, inconsistency = 1978870 36732580 36738082 36719338 36724847 NC_060936.1 CM021579.2 98.82 True relocation, inconsistency = -2036604 34704056 34708600 36727425 36731969 NC_060936.1 CM021579.2 98.2 True relocation, inconsistency = 2163916 36872520 36873825 36731973 36733278 NC_060936.1 CM021579.2 98.77 True relocation, inconsistency = -127314 36747828 36768233 36734595 36755000 NC_060936.1 CM021579.2 99.88 True relocation, inconsistency = -1099911 35686919 35690323 36773597 36777003 NC_060936.1 CM021579.2 99.27 True relocation, inconsistency = -987634 34707809 34710665 36782123 36784980 NC_060936.1 CM021579.2 97.8 True relocation, inconsistency = 2087537 36800795 36857461 36787573 36844250 NC_060936.1 CM021579.2 99.65 True indel: stretch of mismatches 36857462 36986584 36844251 36973375 NC_060936.1 CM021579.2 99.71 True relocation, inconsistency = 188697 37175282 37175858 36973376 36973952 NC_060936.1 CM021579.2 96.36 True local misassembly 37179930 37180587 36973954 36974611 NC_060936.1 CM021579.2 98.17 True local misassembly 37177871 37179535 36974612 36976276 NC_060936.1 CM021579.2 97.78 True local misassembly 37179931 37181453 36976333 36977855 NC_060936.1 CM021579.2 96.45 True local misassembly 37184171 37186842 36977865 36980536 NC_060936.1 CM021579.2 97.34 True local misassembly 37182647 37183943 36981092 36982388 NC_060936.1 CM021579.2 96.84 True local misassembly 37185359 37186887 36982452 36983980 NC_060936.1 CM021579.2 96.99 True indel: indel (<= 5bp) 37186888 37187498 36983985 36984595 NC_060936.1 CM021579.2 98.36 True local misassembly 37187961 37188690 36984715 36985444 NC_060936.1 CM021579.2 97.74 True relocation, inconsistency = -190072 36998619 37077263 36985445 37064086 NC_060936.1 CM021579.2 99.67 True indel: stretch of mismatches 37077264 37112888 37064087 37099699 NC_060936.1 CM021579.2 99.45 True indel: stretch of mismatches 37113030 37117634 37099841 37104455 NC_060936.1 CM021579.2 96.23 True local misassembly 37113030 37116935 37104602 37108514 NC_060936.1 CM021579.2 95.91 True local misassembly 37122974 37129845 37109796 37116667 NC_060936.1 CM021579.2 99.19 True fake: not a misassembly (possible transposable element) 37119756 37124802 37117108 37122153 NC_060936.1 CM021579.2 97.8 True fake: not a misassembly (possible transposable element) 37135658 37158176 37122482 37144999 NC_060936.1 CM021579.2 99.2 True indel: indel (<= 5bp) 37158560 37174432 37145384 37161266 NC_060936.1 CM021579.2 97.85 True indel: indel (<= 5bp) 37174799 37190617 37161631 37177480 NC_060936.1 CM021579.2 98.62 True local misassembly 37191681 37196901 37178544 37183773 NC_060936.1 CM021579.2 98.03 True local misassembly 37199124 37201743 37185996 37188615 NC_060936.1 CM021579.2 98.93 True indel: stretch of mismatches 37201933 37277962 37188805 37265009 NC_060936.1 CM021579.2 99.6 True local misassembly 37279151 37382075 37265010 37368018 NC_060936.1 CM021579.2 99.7 True local misassembly 37382480 37549706 37368024 37535295 NC_060936.1 CM021579.2 99.62 True local misassembly 37549704 37565571 37538701 37554227 NC_060936.1 CM021579.2 97.59 True relocation, inconsistency = -7950 37565557 37632278 37562163 37628882 NC_060936.1 CM021579.2 99.76 True local misassembly 37632552 39416140 37630519 39421092 NC_060936.1 CM021579.2 99.32 True local misassembly 39416417 41360577 39421272 41365367 NC_060936.1 CM021579.2 99.81 True indel: stretch of mismatches 41360578 46935040 41365368 46939881 NC_060936.1 CM021579.2 99.79 True local misassembly 46936087 47594104 46939882 47597752 NC_060936.1 CM021579.2 99.69 True local misassembly 47595259 50912151 47598922 50910567 NC_060936.1 CM021579.2 99.63 True indel: indel (> 5bp) 50912307 55300943 50910772 55299515 NC_060936.1 CM021579.2 99.81 True translocation 78899322 78902764 55302990 55299548 NC_060930.1 CM021579.2 98.17 True indel: indel (<= 5bp) 78897941 78899321 55304376 55302996 NC_060930.1 CM021579.2 98.12 True indel: indel (> 5bp) 78897279 78897940 55305064 55304403 NC_060930.1 CM021579.2 97.89 True local misassembly 78895277 78896986 55306774 55305065 NC_060930.1 CM021579.2 98.69 True translocation 55299991 57461638 55306775 57467716 NC_060936.1 CM021579.2 99.85 True indel: indel (> 5bp) 57461994 58410518 57468028 58416474 NC_060936.1 CM021579.2 99.93 True indel: indel (<= 5bp) 58410556 59529323 58416516 59528276 NC_060936.1 CM021579.2 99.11 True relocation, inconsistency = -10708 59529462 59648466 59539123 59658154 NC_060936.1 CM021579.2 99.81 True local misassembly 59648586 63496089 59658186 63505380 NC_060936.1 CM021579.2 99.45 True indel: indel (> 5bp) 63496288 68974441 63505547 68978918 NC_060936.1 CM021579.2 99.77 True indel: indel (> 5bp) 68974620 70924773 68979090 70935022 NC_060936.1 CM021579.2 99.45 True relocation, inconsistency = -13471 70924791 73165042 70948511 73185155 NC_060936.1 CM021579.2 99.68 True local misassembly 73164861 78272353 73187010 78298065 NC_060936.1 CM021579.2 99.73 True local misassembly 78272596 78855346 78298184 78881505 NC_060936.1 CM021579.2 99.8 True indel: indel (> 5bp) 78855463 81621673 78881567 81647636 NC_060936.1 CM021579.2 99.91 True indel: indel (> 5bp) 81621734 81906753 81647687 81932994 NC_060936.1 CM021579.2 99.66 True indel: indel (> 5bp) 81906896 83428084 81933053 83454107 NC_060936.1 CM021579.2 99.8 True indel: stretch of mismatches 83428085 90074855 83454108 90109030 NC_060936.1 CM021579.2 99.61 True local misassembly 90075234 94574148 90114903 94614012 NC_060936.1 CM021579.2 99.8 True indel: indel (> 5bp) 94574319 95129509 94614103 95168750 NC_060936.1 CM021579.2 99.72 True local misassembly 95129902 99859236 95169307 99912319 NC_060936.1 CM021579.2 99.5 True local misassembly 99859239 102828875 99915765 102886890 NC_060936.1 CM021579.2 99.8 True indel: indel (> 5bp) 102828936 103467752 102886891 103525794 NC_060936.1 CM021579.2 99.87 True local misassembly 103467997 108552734 103525875 108608548 NC_060936.1 CM021579.2 99.75 True indel: indel (> 5bp) 108552870 109184851 108608699 109240459 NC_060936.1 CM021579.2 99.76 True local misassembly 109185154 111519043 109241138 111573690 NC_060936.1 CM021579.2 99.84 True local misassembly 111519133 113677383 111577410 113735260 NC_060936.1 CM021579.2 99.86 True local misassembly 113677519 113950319 113735297 114008072 NC_060936.1 CM021579.2 99.89 True indel: indel (> 5bp) 113950395 114852507 114008179 114908850 NC_060936.1 CM021579.2 99.64 True local misassembly 114852688 115009490 114909334 115066143 NC_060936.1 CM021579.2 99.69 True local misassembly 115009647 115677829 115066388 115734422 NC_060936.1 CM021579.2 99.82 True local misassembly 115677924 115779791 115734423 115836333 NC_060936.1 CM021579.2 99.59 True local misassembly 115780741 119907060 115837140 119961344 NC_060936.1 CM021579.2 99.56 True indel: indel (> 5bp) 119907156 121246079 119961432 121300363 NC_060936.1 CM021579.2 99.83 True local misassembly 121246776 123912752 121301118 123963977 NC_060936.1 CM021579.2 99.64 True indel: indel (> 5bp) 123912947 124298320 123964133 124348939 NC_060936.1 CM021579.2 99.59 True indel: indel (> 5bp) 124298528 125417914 124349137 125466460 NC_060936.1 CM021579.2 99.53 True local misassembly 125418715 126310270 125467142 126358911 NC_060936.1 CM021579.2 99.78 True indel: stretch of mismatches 126310271 126657611 126358912 126706252 NC_060936.1 CM021579.2 99.92 True indel: indel (> 5bp) 126657723 127595421 126706380 127630116 NC_060936.1 CM021579.2 98.02 True indel: indel (<= 5bp) 127595759 127724961 127630456 127759649 NC_060936.1 CM021579.2 99.61 True indel: indel (> 5bp) 127725266 129018463 127760038 129052728 NC_060936.1 CM021579.2 99.52 True indel: indel (> 5bp) 129018519 129861770 129052766 129895463 NC_060936.1 CM021579.2 99.52 True local misassembly 129863317 130194826 129896507 130225281 NC_060936.1 CM021579.2 98.92 True indel: indel (<= 5bp) 130195090 130429288 130225543 130460532 NC_060936.1 CM021579.2 99.54 True local misassembly 130429710 130683399 130461072 130714912 NC_060936.1 CM021579.2 99.34 True local misassembly 130683841 130702840 130715966 130734730 NC_060936.1 CM021579.2 95.65 True indel: indel (> 5bp) 130702990 130705568 130734826 130737404 NC_060936.1 CM021579.2 99.61 True indel: indel (> 5bp) 130705610 131434315 130737405 131465910 NC_060936.1 CM021579.2 98.88 True local misassembly 131434969 131475214 131466461 131506016 NC_060936.1 CM021579.2 97.35 True local misassembly 131476058 131519766 131506017 131549792 NC_060936.1 CM021579.2 98.56 True indel: indel (<= 5bp) 131520011 131619672 131550040 131649627 NC_060936.1 CM021579.2 99.39 True indel: indel (<= 5bp) 131620060 131623166 131650019 131653160 NC_060936.1 CM021579.2 98.38 True local misassembly 131628508 131694379 131654636 131720971 NC_060936.1 CM021579.2 96.2 True local misassembly 131696397 131963171 131726300 131993055 NC_060936.1 CM021579.2 99.14 True local misassembly 131964230 132206254 131993753 132233059 NC_060936.1 CM021579.2 98.77 True indel: indel (> 5bp) 132206260 132412925 132233072 132443144 NC_060936.1 CM021579.2 96.9 True indel: indel (<= 5bp) 132412938 132462336 132443160 132491822 NC_060936.1 CM021579.2 96.22 True local misassembly 132463641 132520273 132493281 132549817 NC_060936.1 CM021579.2 99.24 True indel: indel (> 5bp) 132520397 133005216 132549900 133034894 NC_060936.1 CM021579.2 99.87 True local misassembly 133011422 133322343 133036207 133346914 NC_060936.1 CM021579.2 99.91 True translocation 3623 5635 133349155 133347193 NC_060948.1 CM021579.2 96.19 True CONTIG CM021579.2 133349155 misassembled 1 36796 1 36719 NC_060937.1 CM021580.2 99.34 True indel: stretch of mismatches 36990 84297 36913 84224 NC_060937.1 CM021580.2 99.52 True indel: indel (<= 5bp) 84451 102123 84383 102057 NC_060937.1 CM021580.2 99.47 True indel: stretch of mismatches 102124 107329 102058 107268 NC_060937.1 CM021580.2 98.45 True local misassembly 107702 131934 107269 131821 NC_060937.1 CM021580.2 97.26 True indel: stretch of mismatches 131935 142854 131822 142736 NC_060937.1 CM021580.2 98.89 True fake: not a misassembly (possible transposable element) 100873 105121 143621 147868 NC_060937.1 CM021580.2 98.73 True fake: not a misassembly (possible transposable element) 148061 177690 147869 177419 NC_060937.1 CM021580.2 98.18 True indel: stretch of mismatches 178186 207061 177915 206802 NC_060937.1 CM021580.2 99.75 True relocation, inconsistency = 2115702 2323306 2323828 207345 207867 NC_060937.1 CM021580.2 95.22 True indel: indel (<= 5bp) 2323829 2325682 207871 209724 NC_060937.1 CM021580.2 97.68 True relocation, inconsistency = -2115493 219679 237643 219214 237184 NC_060937.1 CM021580.2 99.28 True indel: stretch of mismatches 237765 244341 237306 243883 NC_060937.1 CM021580.2 98.68 True local misassembly 244989 268119 244531 267543 NC_060937.1 CM021580.2 98.61 True fake: not a misassembly (possible transposable element) 284402 286798 267544 269949 NC_060937.1 CM021580.2 98.27 True fake: not a misassembly (possible transposable element) 270515 317888 269950 317348 NC_060937.1 CM021580.2 99.28 True local misassembly 318726 330760 318181 330205 NC_060937.1 CM021580.2 99.16 True local misassembly 331465 360792 330910 360153 NC_060937.1 CM021580.2 98.9 True local misassembly 361802 368098 361160 367456 NC_060937.1 CM021580.2 99.08 True indel: stretch of mismatches 368228 371258 367586 370616 NC_060937.1 CM021580.2 99.93 True fake: not a misassembly (possible transposable element) 354959 358287 371032 374360 NC_060937.1 CM021580.2 99.9 True fake: not a misassembly (possible transposable element) 375217 399470 374361 398673 NC_060937.1 CM021580.2 96.65 True relocation, inconsistency = 29991 429462 430605 398674 399817 NC_060937.1 CM021580.2 99.71 True indel: indel (> 5bp) 430606 431375 399850 400619 NC_060937.1 CM021580.2 99.64 True relocation, inconsistency = -30134 401242 421219 400620 420683 NC_060937.1 CM021580.2 98.39 True local misassembly 417544 422474 420684 425610 NC_060937.1 CM021580.2 97.2 True local misassembly 426245 469052 425611 468353 NC_060937.1 CM021580.2 97.18 True relocation, inconsistency = 264328 733381 743891 468354 478868 NC_060937.1 CM021580.2 98.74 True relocation, inconsistency = -264323 481187 500834 480487 500134 NC_060937.1 CM021580.2 99.46 True fake: not a misassembly (possible transposable element) 509547 510886 500135 501474 NC_060937.1 CM021580.2 98.35 True fake: not a misassembly (possible transposable element) 506706 510099 505821 509220 NC_060937.1 CM021580.2 97.73 True local misassembly 509764 519477 509221 518557 NC_060937.1 CM021580.2 95.35 True translocation 1434385 1435181 518558 519354 NC_060939.1 CM021580.2 96.73 True translocation 226830 233818 521596 528573 NC_060937.1 CM021580.2 98.01 True relocation, inconsistency = 295929 529748 567677 528574 566323 NC_060937.1 CM021580.2 98.93 True indel: indel (<= 5bp) 567857 591298 566505 589784 NC_060937.1 CM021580.2 98.68 True fake: not a misassembly (possible transposable element) 2734024 2734815 589785 590532 NC_060946.1 CM021580.2 96.22 True fake: not a misassembly (possible transposable element) 593379 629588 591653 628188 NC_060937.1 CM021580.2 98.36 True relocation, inconsistency = 30599 661242 662230 629243 630231 NC_060937.1 CM021580.2 98.08 True local misassembly 662614 663750 630773 631909 NC_060937.1 CM021580.2 98.08 True relocation, inconsistency = -29861 633890 646354 631910 644374 NC_060937.1 CM021580.2 99.85 True indel: stretch of mismatches 646355 653789 644375 651821 NC_060937.1 CM021580.2 99.35 True relocation, inconsistency = -46916 607097 608026 652045 652974 NC_060937.1 CM021580.2 98.28 True local misassembly 608027 608949 653185 654107 NC_060937.1 CM021580.2 99.53 True relocation, inconsistency = 47146 656096 688620 654108 686686 NC_060937.1 CM021580.2 99.17 True fake: not a misassembly (possible transposable element) 696745 698648 686687 688585 NC_060937.1 CM021580.2 97.25 True fake: not a misassembly (possible transposable element) 693760 707503 691804 705552 NC_060937.1 CM021580.2 99.17 True relocation, inconsistency = 27375 735363 737556 706037 708230 NC_060937.1 CM021580.2 99.04 True indel: indel (<= 5bp) 737557 739367 708232 710042 NC_060937.1 CM021580.2 98.29 True relocation, inconsistency = -27381 712646 732233 710702 730289 NC_060937.1 CM021580.2 99.17 True indel: stretch of mismatches 732234 744724 730290 742701 NC_060937.1 CM021580.2 98.74 True fake: not a misassembly (possible transposable element) 1249280 1251587 742883 745198 NC_060939.1 CM021580.2 96.87 True fake: not a misassembly (possible transposable element) 747424 763249 745199 761032 NC_060937.1 CM021580.2 99.26 True local misassembly 764168 783467 761825 781006 NC_060937.1 CM021580.2 98.08 True local misassembly 788109 799107 785459 796453 NC_060937.1 CM021580.2 97.75 True local misassembly 799809 853066 797113 850062 NC_060937.1 CM021580.2 98.92 True local misassembly 857998 867829 854919 864740 NC_060937.1 CM021580.2 98.6 True local misassembly 868422 887185 865338 884264 NC_060937.1 CM021580.2 97.96 True relocation, inconsistency = -11622 875564 877938 884265 886639 NC_060937.1 CM021580.2 98.42 True local misassembly 875903 878855 886640 889598 NC_060937.1 CM021580.2 97.63 True relocation, inconsistency = 13678 892534 922589 889599 919524 NC_060937.1 CM021580.2 97.59 True fake: not a misassembly (possible transposable element) 863548 867306 919525 923283 NC_060937.1 CM021580.2 97.48 True fake: not a misassembly (possible transposable element) 927298 947742 923519 943968 NC_060937.1 CM021580.2 99.39 True local misassembly 950744 956980 943969 950210 NC_060937.1 CM021580.2 99.51 True translocation 2938968 2941772 950211 953015 NC_060946.1 CM021580.2 99.39 True indel: indel (<= 5bp) 2941774 2945806 953016 957048 NC_060946.1 CM021580.2 98.76 True relocation, inconsistency = 57171 3003091 3005947 957162 960018 NC_060946.1 CM021580.2 98.74 True local misassembly 3011758 3016071 960189 964506 NC_060946.1 CM021580.2 96.88 True relocation, inconsistency = 51433 3067505 3069027 964507 966029 NC_060946.1 CM021580.2 99.12 True translocation 976641 977501 966030 966890 NC_060937.1 CM021580.2 98.46 True local misassembly 983409 989246 966891 972727 NC_060937.1 CM021580.2 98.9 True translocation 2986300 2989135 973713 976533 NC_060946.1 CM021580.2 96.44 True translocation 986446 1006087 976986 996630 NC_060937.1 CM021580.2 99.48 True translocation 3034459 3035170 996631 997342 NC_060946.1 CM021580.2 99.6 True local misassembly 3035171 3037690 997506 1000025 NC_060946.1 CM021580.2 99.6 True local misassembly 3037691 3038985 1000529 1001823 NC_060946.1 CM021580.2 99.92 True indel: indel (<= 5bp) 3038987 3045956 1001824 1008793 NC_060946.1 CM021580.2 98.81 True translocation 1035709 1037055 1008794 1010128 NC_060937.1 CM021580.2 96.95 True relocation, inconsistency = 20443 1057499 1063861 1010129 1016444 NC_060937.1 CM021580.2 97.88 True relocation, inconsistency = -36496 1027366 1035882 1016445 1024955 NC_060937.1 CM021580.2 99.39 True local misassembly 1031754 1060196 1024956 1052663 NC_060937.1 CM021580.2 96.73 True local misassembly 1059076 1061337 1052664 1054925 NC_060937.1 CM021580.2 98.66 True relocation, inconsistency = -45463 1015875 1019317 1054926 1058368 NC_060937.1 CM021580.2 99.8 True local misassembly 1026232 1036459 1058369 1068558 NC_060937.1 CM021580.2 95.41 True relocation, inconsistency = 15570 1052288 1055009 1068817 1071538 NC_060937.1 CM021580.2 99.04 True indel: indel (<= 5bp) 1055010 1055899 1071544 1072433 NC_060937.1 CM021580.2 96.97 True local misassembly 1055900 1057198 1072602 1073900 NC_060937.1 CM021580.2 96.0 True translocation 3085398 3085928 1073952 1074482 NC_060946.1 CM021580.2 99.41 True translocation 1129553 1132791 1074483 1077726 NC_060937.1 CM021580.2 98.4 True translocation 3108991 3109703 1078289 1079001 NC_060946.1 CM021580.2 99.72 True indel: indel (<= 5bp) 3109704 3110255 1079003 1079554 NC_060946.1 CM021580.2 99.64 True local misassembly 3110256 3111301 1079930 1080975 NC_060946.1 CM021580.2 99.62 True local misassembly 3111680 3114231 1080976 1083527 NC_060946.1 CM021580.2 99.6 True translocation 1099874 1120228 1083528 1103136 NC_060937.1 CM021580.2 96.14 True local misassembly 1125516 1129782 1103137 1107408 NC_060937.1 CM021580.2 98.45 True local misassembly 1131283 1132019 1107788 1108524 NC_060937.1 CM021580.2 97.69 True indel: indel (> 5bp) 1132020 1135037 1108567 1111584 NC_060937.1 CM021580.2 99.27 True indel: indel (<= 5bp) 1135038 1143250 1111590 1119802 NC_060937.1 CM021580.2 99.9 True translocation 3172495 3178039 1125682 1131183 NC_060946.1 CM021580.2 98.0 True local misassembly 3173384 3177214 1131184 1135014 NC_060946.1 CM021580.2 99.74 True local misassembly 3172853 3177789 1135593 1140529 NC_060946.1 CM021580.2 99.47 True translocation 764000 765029 1142652 1143681 NC_060937.1 CM021580.2 98.04 True translocation 3106946 3108832 1143682 1145568 NC_060946.1 CM021580.2 98.78 True local misassembly 3109704 3110255 1146441 1146992 NC_060946.1 CM021580.2 99.28 True local misassembly 3110489 3111532 1147603 1148646 NC_060946.1 CM021580.2 99.14 True local misassembly 3111533 3114208 1148773 1151448 NC_060946.1 CM021580.2 99.03 True local misassembly 3111143 3112439 1151449 1152745 NC_060946.1 CM021580.2 98.51 True indel: indel (<= 5bp) 3112441 3114187 1152746 1154492 NC_060946.1 CM021580.2 98.68 True local misassembly 3114188 3115656 1154703 1156171 NC_060946.1 CM021580.2 98.43 True translocation 807852 808965 1156234 1157347 NC_060937.1 CM021580.2 98.59 True relocation, inconsistency = 340436 1149402 1157365 1157348 1164933 NC_060937.1 CM021580.2 95.1 True relocation, inconsistency = 15776 1173142 1180494 1164934 1172291 NC_060937.1 CM021580.2 98.68 True translocation 3129040 3137140 1172292 1180388 NC_060946.1 CM021580.2 97.52 True relocation, inconsistency = 43761 3180902 3182941 1180389 1182422 NC_060946.1 CM021580.2 97.17 True local misassembly 3178815 3183934 1182423 1187542 NC_060946.1 CM021580.2 98.09 True relocation, inconsistency = -76711 3109757 3111991 1190076 1192313 NC_060946.1 CM021580.2 97.94 True translocation 804467 805670 1192314 1193517 NC_060937.1 CM021580.2 99.32 True indel: indel (<= 5bp) 805671 807010 1193519 1194858 NC_060937.1 CM021580.2 97.76 True local misassembly 807852 811051 1195322 1198521 NC_060937.1 CM021580.2 98.72 True local misassembly 811429 812501 1198522 1199594 NC_060937.1 CM021580.2 99.44 True indel: indel (<= 5bp) 812502 814721 1199596 1201815 NC_060937.1 CM021580.2 98.76 True relocation, inconsistency = 352525 1167247 1181371 1201816 1215567 NC_060937.1 CM021580.2 96.82 True relocation, inconsistency = -408193 773774 776274 1216163 1218668 NC_060937.1 CM021580.2 98.72 True translocation 3131380 3133072 1218921 1220613 NC_060946.1 CM021580.2 98.23 True translocation 1180267 1182055 1233235 1235023 NC_060937.1 CM021580.2 99.5 True relocation, inconsistency = 19982 1202038 1213370 1235024 1246184 NC_060937.1 CM021580.2 97.58 True relocation, inconsistency = -355478 857977 861030 1246269 1249323 NC_060937.1 CM021580.2 98.37 True relocation, inconsistency = 320003 1181034 1191268 1249324 1259567 NC_060937.1 CM021580.2 98.42 True relocation, inconsistency = 17882 1214473 1231173 1264890 1281423 NC_060937.1 CM021580.2 98.18 True relocation, inconsistency = 31236 1262598 1263626 1281612 1282640 NC_060937.1 CM021580.2 97.38 True local misassembly 1263627 1265239 1282809 1284421 NC_060937.1 CM021580.2 97.09 True translocation 3203139 3204031 1284422 1285314 NC_060946.1 CM021580.2 98.77 True translocation 1235481 1252775 1285315 1302782 NC_060937.1 CM021580.2 97.57 True indel: indel (> 5bp) 1252993 1262425 1302990 1312419 NC_060937.1 CM021580.2 99.17 True indel: indel (<= 5bp) 1262803 1263403 1312796 1313396 NC_060937.1 CM021580.2 99.17 True local misassembly 1263782 1265617 1313397 1315232 NC_060937.1 CM021580.2 97.39 True local misassembly 1266440 1267409 1316062 1317031 NC_060937.1 CM021580.2 98.66 True local misassembly 1267410 1269900 1317410 1319900 NC_060937.1 CM021580.2 98.8 True indel: stretch of mismatches 1270052 1345911 1320052 1395581 NC_060937.1 CM021580.2 99.03 True relocation, inconsistency = 1247412 2593324 2604397 1395582 1406698 NC_060937.1 CM021580.2 98.24 True relocation, inconsistency = 897546 3501944 3506369 1406699 1411124 NC_060937.1 CM021580.2 99.32 True indel: indel (<= 5bp) 3506371 3509488 1411125 1414242 NC_060937.1 CM021580.2 99.65 True indel: indel (> 5bp) 3509944 3511075 1414739 1415870 NC_060937.1 CM021580.2 97.97 True local misassembly 3511934 3514286 1417360 1419712 NC_060937.1 CM021580.2 99.32 True local misassembly 3514287 3515632 1420300 1421645 NC_060937.1 CM021580.2 99.11 True local misassembly 3515633 3519167 1422024 1425558 NC_060937.1 CM021580.2 99.26 True indel: indel (<= 5bp) 3519168 3519743 1425562 1426137 NC_060937.1 CM021580.2 98.01 True relocation, inconsistency = -2143569 1376175 1385376 1426138 1435339 NC_060937.1 CM021580.2 99.9 True indel: indel (<= 5bp) 1385380 1386359 1435340 1436319 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = 1547916 2934333 2935235 1436377 1437279 NC_060937.1 CM021580.2 96.46 True indel: indel (<= 5bp) 2935236 2936090 1437281 1438135 NC_060937.1 CM021580.2 95.91 True relocation, inconsistency = -1549216 1386875 1391032 1438136 1442293 NC_060937.1 CM021580.2 99.66 True local misassembly 1391410 1393373 1442294 1444257 NC_060937.1 CM021580.2 98.84 True relocation, inconsistency = 2703894 4097268 4104884 1444258 1451884 NC_060937.1 CM021580.2 99.29 True relocation, inconsistency = -515353 3589532 3590448 1451885 1452801 NC_060937.1 CM021580.2 99.72 True local misassembly 3591195 3594065 1452802 1455672 NC_060937.1 CM021580.2 99.69 True relocation, inconsistency = -1408606 2185460 2186476 1455673 1456689 NC_060937.1 CM021580.2 98.84 True relocation, inconsistency = 1531660 3718287 3720906 1456840 1459458 NC_060937.1 CM021580.2 98.0 True relocation, inconsistency = 342935 4063842 4065278 1459459 1460895 NC_060937.1 CM021580.2 97.51 True relocation, inconsistency = -2651655 1413624 1417858 1460896 1465130 NC_060937.1 CM021580.2 99.83 True relocation, inconsistency = 2699788 4117650 4118839 1465134 1466323 NC_060937.1 CM021580.2 97.76 True relocation, inconsistency = -2688376 1430464 1439325 1466324 1475185 NC_060937.1 CM021580.2 99.46 True fake: not a misassembly (possible transposable element) 4118289 4119217 1475186 1476114 NC_060937.1 CM021580.2 97.6 True fake: not a misassembly (possible transposable element) 1438748 1442501 1476115 1479994 NC_060937.1 CM021580.2 96.6 True relocation, inconsistency = 2158491 3600993 3607951 1479995 1486953 NC_060937.1 CM021580.2 99.44 True relocation, inconsistency = -1371180 2236772 2242714 1486954 1492896 NC_060937.1 CM021580.2 99.75 True relocation, inconsistency = -776013 1467624 1468395 1493819 1494590 NC_060937.1 CM021580.2 98.96 True fake: not a misassembly (possible transposable element) 3473933 3477017 1496671 1499750 NC_060937.1 CM021580.2 97.12 True fake: not a misassembly (possible transposable element) 1477529 1483442 1500217 1506130 NC_060937.1 CM021580.2 99.63 True indel: indel (> 5bp) 1483477 1486086 1506234 1508843 NC_060937.1 CM021580.2 100.0 True local misassembly 1486087 1490779 1509968 1514660 NC_060937.1 CM021580.2 99.94 True indel: indel (> 5bp) 1490797 1491691 1514661 1515555 NC_060937.1 CM021580.2 95.64 True relocation, inconsistency = 2290580 3782429 3788511 1515713 1521786 NC_060937.1 CM021580.2 96.91 True local misassembly 3795553 3797973 1521886 1524306 NC_060937.1 CM021580.2 98.82 True relocation, inconsistency = -2303600 1494374 1497830 1524307 1527760 NC_060937.1 CM021580.2 99.73 True relocation, inconsistency = 8944 1506775 1519092 1527761 1539693 NC_060937.1 CM021580.2 96.13 True local misassembly 1521578 1532565 1540678 1551667 NC_060937.1 CM021580.2 99.7 True fake: not a misassembly (possible transposable element) 3178076 3184111 1551668 1557703 NC_060937.1 CM021580.2 99.33 True fake: not a misassembly (possible transposable element) 1535765 1539550 1557704 1561489 NC_060937.1 CM021580.2 99.82 True local misassembly 1540181 1547061 1561490 1568370 NC_060937.1 CM021580.2 98.53 True local misassembly 1553488 1555367 1568371 1570250 NC_060937.1 CM021580.2 99.23 True local misassembly 1555746 1558138 1570251 1572643 NC_060937.1 CM021580.2 97.49 True local misassembly 1560166 1568573 1572907 1581314 NC_060937.1 CM021580.2 99.75 True relocation, inconsistency = 204579 1773153 1775042 1581315 1583204 NC_060937.1 CM021580.2 98.92 True relocation, inconsistency = 1242497 3017840 3022765 1583505 1588430 NC_060937.1 CM021580.2 99.78 True local misassembly 3022766 3025074 1589185 1591493 NC_060937.1 CM021580.2 99.91 True local misassembly 3025453 3034051 1591494 1600092 NC_060937.1 CM021580.2 99.74 True relocation, inconsistency = -927377 2106675 2107408 1600093 1600826 NC_060937.1 CM021580.2 98.29 True local misassembly 2107787 2108682 1600827 1601722 NC_060937.1 CM021580.2 100.0 True indel: indel (<= 5bp) 2108684 2109696 1601723 1602735 NC_060937.1 CM021580.2 99.9 True local misassembly 2110499 2111084 1603159 1603744 NC_060937.1 CM021580.2 97.61 True indel: indel (<= 5bp) 2111085 2112886 1603746 1605547 NC_060937.1 CM021580.2 98.06 True relocation, inconsistency = 1828909 3941829 3949838 1605581 1613589 NC_060937.1 CM021580.2 98.78 True relocation, inconsistency = -895313 3054600 3058072 1613664 1617136 NC_060937.1 CM021580.2 99.37 True relocation, inconsistency = 1198622 4256695 4266164 1617137 1626606 NC_060937.1 CM021580.2 98.81 True local misassembly 4266543 4267083 1626607 1627147 NC_060937.1 CM021580.2 97.6 True indel: indel (<= 5bp) 4267085 4269340 1627148 1629403 NC_060937.1 CM021580.2 99.73 True relocation, inconsistency = -1190407 3079228 3083345 1629698 1633815 NC_060937.1 CM021580.2 99.9 True relocation, inconsistency = -1268031 1815315 1826768 1633816 1644891 NC_060937.1 CM021580.2 95.46 True local misassembly 1820349 1827151 1644892 1651529 NC_060937.1 CM021580.2 95.67 True relocation, inconsistency = -212598 1614554 1616424 1651530 1653400 NC_060937.1 CM021580.2 99.82 True fake: not a misassembly (possible transposable element) 1268364 1269817 1653875 1655328 NC_060938.1 CM021580.2 95.67 True fake: not a misassembly (possible transposable element) 1617909 1619792 1655474 1657357 NC_060937.1 CM021580.2 99.68 True local misassembly 1620002 1623481 1657358 1660837 NC_060937.1 CM021580.2 99.65 True relocation, inconsistency = 1435953 3059435 3070589 1660838 1671739 NC_060937.1 CM021580.2 96.29 True local misassembly 3076476 3078992 1671740 1673978 NC_060937.1 CM021580.2 95.91 True relocation, inconsistency = -1439318 1639675 1654003 1673979 1688307 NC_060937.1 CM021580.2 99.83 True relocation, inconsistency = 1417413 3071417 3076276 1688308 1693167 NC_060937.1 CM021580.2 99.72 True local misassembly 3076744 3078992 1693258 1695506 NC_060937.1 CM021580.2 99.83 True relocation, inconsistency = 31241 3110234 3113261 1695507 1698534 NC_060937.1 CM021580.2 98.99 True relocation, inconsistency = -1468798 1644464 1690955 1698535 1745276 NC_060937.1 CM021580.2 96.11 True fake: not a misassembly (possible transposable element) 3161060 3162526 1745277 1746743 NC_060937.1 CM021580.2 99.88 True fake: not a misassembly (possible transposable element) 1692505 1704413 1746744 1758609 NC_060937.1 CM021580.2 99.05 True local misassembly 1718237 1767684 1772273 1821721 NC_060937.1 CM021580.2 98.07 True local misassembly 1768935 1791819 1822972 1846107 NC_060937.1 CM021580.2 96.36 True local misassembly 1792298 1856474 1846208 1909828 NC_060937.1 CM021580.2 98.64 True relocation, inconsistency = -27838 1828637 1833210 1909829 1914392 NC_060937.1 CM021580.2 98.34 True relocation, inconsistency = 2473067 4306278 4306920 1914393 1915035 NC_060937.1 CM021580.2 99.62 True relocation, inconsistency = -2445524 1861397 1873182 1915036 1926822 NC_060937.1 CM021580.2 99.5 True fake: not a misassembly (possible transposable element) 1353069 1354389 1927315 1928635 NC_060937.1 CM021580.2 97.88 True fake: not a misassembly (possible transposable element) 1875182 1945940 1928821 1999529 NC_060937.1 CM021580.2 98.55 True relocation, inconsistency = 2653108 4599347 4604351 1999828 2004832 NC_060937.1 CM021580.2 98.47 True relocation, inconsistency = -2653106 1951246 2046529 2004833 2100113 NC_060937.1 CM021580.2 99.8 True indel: stretch of mismatches 2046631 2050932 2100215 2104516 NC_060937.1 CM021580.2 99.95 True translocation 1661876 1662489 2105175 2104562 NC_060945.1 CM021580.2 98.13 True translocation 4705448 4706997 2105176 2106725 NC_060937.1 CM021580.2 98.65 True translocation 94947971 94949231 2119979 2118719 NC_060927.1 CM021580.2 97.44 True translocation 2066732 2133748 2119980 2187201 NC_060937.1 CM021580.2 99.47 True relocation, inconsistency = 451570 2585506 2588042 2187389 2189925 NC_060937.1 CM021580.2 99.09 True relocation, inconsistency = 914728 3502991 3504435 2190146 2191590 NC_060937.1 CM021580.2 96.4 True relocation, inconsistency = -1366126 2138310 2211842 2191591 2265123 NC_060937.1 CM021580.2 99.88 True fake: not a misassembly (possible transposable element) 4103467 4106595 2265124 2268089 NC_060937.1 CM021580.2 95.18 True fake: not a misassembly (possible transposable element) 2214818 2298816 2268090 2352045 NC_060937.1 CM021580.2 99.8 True local misassembly 2300810 2364855 2353829 2417880 NC_060937.1 CM021580.2 99.84 True local misassembly 2367354 2372483 2420381 2425510 NC_060937.1 CM021580.2 98.4 True indel: stretch of mismatches 2372484 2471760 2425511 2524734 NC_060937.1 CM021580.2 99.62 True indel: indel (<= 5bp) 2472245 2510924 2525221 2563936 NC_060937.1 CM021580.2 99.36 True relocation, inconsistency = -1546641 966825 967569 2566478 2567222 NC_060937.1 CM021580.2 96.14 True relocation, inconsistency = 2935831 3903401 3912010 2567223 2575831 NC_060937.1 CM021580.2 96.0 True relocation, inconsistency = -1389097 2524377 2545401 2577295 2598318 NC_060937.1 CM021580.2 99.76 True relocation, inconsistency = 1392785 3938257 3942504 2598389 2602605 NC_060937.1 CM021580.2 98.09 True local misassembly 3937136 3940152 2603316 2606332 NC_060937.1 CM021580.2 98.65 True relocation, inconsistency = -1386496 2553657 2564606 2606333 2617285 NC_060937.1 CM021580.2 99.32 True indel: stretch of mismatches 2564721 2589892 2617400 2642576 NC_060937.1 CM021580.2 99.0 True indel: stretch of mismatches 2589893 2611218 2642577 2663858 NC_060937.1 CM021580.2 99.21 True fake: not a misassembly (possible transposable element) 1375212 1376797 2663859 2665444 NC_060937.1 CM021580.2 99.0 True fake: not a misassembly (possible transposable element) 2612805 2628342 2665445 2680899 NC_060937.1 CM021580.2 97.45 True indel: stretch of mismatches 2628343 2683493 2680900 2735882 NC_060937.1 CM021580.2 99.15 True indel: stretch of mismatches 2683494 2710171 2735883 2762435 NC_060937.1 CM021580.2 98.92 True local misassembly 2710365 2720185 2762756 2772449 NC_060937.1 CM021580.2 97.78 True indel: stretch of mismatches 2720600 2741392 2772864 2793656 NC_060937.1 CM021580.2 99.48 True fake: not a misassembly (possible transposable element) 2723607 2726497 2793657 2796547 NC_060937.1 CM021580.2 99.09 True fake: not a misassembly (possible transposable element) 2744326 2754060 2796548 2806241 NC_060937.1 CM021580.2 98.38 True fake: not a misassembly (possible transposable element) 2981901 2988075 2807588 2813675 NC_060937.1 CM021580.2 96.33 True fake: not a misassembly (possible transposable element) 2763662 2843168 2815590 2895101 NC_060937.1 CM021580.2 99.7 True indel: stretch of mismatches 2843295 2904228 2895228 2956035 NC_060937.1 CM021580.2 99.57 True fake: not a misassembly (possible transposable element) 4317123 4318304 2956036 2957217 NC_060937.1 CM021580.2 99.92 True fake: not a misassembly (possible transposable element) 2906490 2939471 2958253 2991152 NC_060937.1 CM021580.2 99.12 True local misassembly 2943628 2948361 2991153 2995888 NC_060937.1 CM021580.2 98.49 True local misassembly 2947408 2971589 2999090 3023283 NC_060937.1 CM021580.2 99.36 True indel: indel (<= 5bp) 2971892 2981368 3023587 3033073 NC_060937.1 CM021580.2 98.28 True relocation, inconsistency = 1525351 4506720 4507568 3033074 3033918 NC_060937.1 CM021580.2 98.01 True local misassembly 4508002 4509941 3033979 3035916 NC_060937.1 CM021580.2 97.42 True relocation, inconsistency = -48603 4461378 4462630 3035956 3037208 NC_060937.1 CM021580.2 96.39 True relocation, inconsistency = -1477144 2985487 3075407 3037209 3127214 NC_060937.1 CM021580.2 99.74 True indel: stretch of mismatches 3075408 3132860 3127215 3184674 NC_060937.1 CM021580.2 99.65 True local misassembly 3132115 3134985 3184675 3187545 NC_060937.1 CM021580.2 99.77 True local misassembly 3135359 3139042 3187546 3191229 NC_060937.1 CM021580.2 99.84 True local misassembly 3139421 3140260 3191230 3192069 NC_060937.1 CM021580.2 99.88 True indel: indel (<= 5bp) 3140261 3141105 3192071 3192915 NC_060937.1 CM021580.2 99.88 True indel: indel (<= 5bp) 3141107 3159102 3192916 3210911 NC_060937.1 CM021580.2 99.86 True relocation, inconsistency = -1459064 1700039 1702474 3210912 3213270 NC_060937.1 CM021580.2 96.67 True relocation, inconsistency = 9378 1711853 1718141 3213271 3219537 NC_060937.1 CM021580.2 97.33 True relocation, inconsistency = 1449806 3167948 3228296 3219538 3279934 NC_060937.1 CM021580.2 99.28 True local misassembly 3228983 3237092 3280452 3288437 NC_060937.1 CM021580.2 97.34 True local misassembly 3237614 3386627 3288958 3437969 NC_060937.1 CM021580.2 99.17 True relocation, inconsistency = 1288513 4675365 4678293 3438194 3441130 NC_060937.1 CM021580.2 98.16 True translocation 1719509 1721480 3442071 3444047 NC_060945.1 CM021580.2 97.57 True translocation 2008277 2010125 3444444 3446292 NC_060937.1 CM021580.2 99.68 True relocation, inconsistency = 1384837 3395232 3412382 3446562 3463707 NC_060937.1 CM021580.2 99.81 True fake: not a misassembly (possible transposable element) 4707105 4707692 3464375 3464962 NC_060937.1 CM021580.2 98.3 True fake: not a misassembly (possible transposable element) 3414873 3417877 3466193 3469199 NC_060937.1 CM021580.2 98.54 True fake: not a misassembly (possible transposable element) 2061043 2063333 3487111 3489400 NC_060937.1 CM021580.2 97.45 True fake: not a misassembly (possible transposable element) 3438331 3471615 3489401 3522683 NC_060937.1 CM021580.2 99.2 True relocation, inconsistency = 751512 4223128 4224881 3522684 3524472 NC_060937.1 CM021580.2 97.02 True relocation, inconsistency = -2927882 1297000 1301247 3524473 3528677 NC_060937.1 CM021580.2 97.33 True relocation, inconsistency = 2176450 3477698 3569417 3528678 3620354 NC_060937.1 CM021580.2 99.66 True indel: indel (<= 5bp) 3569521 3570500 3620459 3621436 NC_060937.1 CM021580.2 99.01 True indel: stretch of mismatches 3570501 3603612 3621437 3654546 NC_060937.1 CM021580.2 99.71 True local misassembly 3604369 3623725 3655317 3674668 NC_060937.1 CM021580.2 95.8 True local misassembly 3622975 3625852 3674669 3677546 NC_060937.1 CM021580.2 99.84 True local misassembly 3626600 3633102 3677547 3684049 NC_060937.1 CM021580.2 99.63 True indel: indel (> 5bp) 3633289 3634034 3684242 3684987 NC_060937.1 CM021580.2 98.26 True indel: indel (<= 5bp) 3634040 3641465 3684988 3692413 NC_060937.1 CM021580.2 99.5 True local misassembly 3641466 3644802 3692792 3696128 NC_060937.1 CM021580.2 99.85 True local misassembly 3645181 3646333 3696129 3697281 NC_060937.1 CM021580.2 99.84 True relocation, inconsistency = 99508 3745842 3774001 3697282 3725440 NC_060937.1 CM021580.2 99.8 True relocation, inconsistency = -89810 3684192 3695415 3725441 3736663 NC_060937.1 CM021580.2 99.51 True relocation, inconsistency = -1396617 2298799 2306816 3736664 3744849 NC_060937.1 CM021580.2 97.69 True fake: not a misassembly (possible transposable element) 1428661 1429292 3745448 3746079 NC_060937.1 CM021580.2 96.36 True fake: not a misassembly (possible transposable element) 2303586 2313420 3747291 3757131 NC_060937.1 CM021580.2 99.61 True relocation, inconsistency = 1422958 3736379 3741971 3757132 3762714 NC_060937.1 CM021580.2 97.91 True local misassembly 3742718 3745004 3762715 3765001 NC_060937.1 CM021580.2 99.91 True local misassembly 3745005 3764072 3765128 3784195 NC_060937.1 CM021580.2 99.88 True local misassembly 3765139 3765826 3784506 3785193 NC_060937.1 CM021580.2 99.71 True indel: indel (<= 5bp) 3765828 3768470 3785194 3787836 NC_060937.1 CM021580.2 99.63 True local misassembly 3767715 3784347 3787837 3804091 NC_060937.1 CM021580.2 96.8 True relocation, inconsistency = -2104283 1680069 1682254 3804096 3806281 NC_060937.1 CM021580.2 99.82 True local misassembly 1683107 1684016 3806892 3807801 NC_060937.1 CM021580.2 97.69 True local misassembly 1684599 1686437 3808016 3809854 NC_060937.1 CM021580.2 99.39 True relocation, inconsistency = 2103305 3789743 3800288 3809855 3820402 NC_060937.1 CM021580.2 98.6 True relocation, inconsistency = -2363118 1437220 1438171 3820452 3821403 NC_060937.1 CM021580.2 97.27 True relocation, inconsistency = 927040 2365505 2372483 3821697 3828681 NC_060937.1 CM021580.2 98.63 True relocation, inconsistency = 1436086 3808570 3898506 3828682 3918995 NC_060937.1 CM021580.2 98.27 True relocation, inconsistency = 278630 4177452 4181419 3919311 3923279 NC_060937.1 CM021580.2 97.0 True relocation, inconsistency = -258099 3923321 3929993 3923280 3929955 NC_060937.1 CM021580.2 97.63 True relocation, inconsistency = -20030 3921941 3977395 3941933 3997388 NC_060937.1 CM021580.2 99.67 True relocation, inconsistency = -2640945 1336451 1337871 3997389 3998808 NC_060937.1 CM021580.2 98.45 True relocation, inconsistency = 2975183 4315206 4319879 4000960 4005466 NC_060937.1 CM021580.2 95.14 True relocation, inconsistency = -334361 3985519 3988000 4005467 4007948 NC_060937.1 CM021580.2 99.61 True indel: indel (<= 5bp) 3988002 3994482 4007949 4014429 NC_060937.1 CM021580.2 99.63 True indel: indel (<= 5bp) 3994484 3999624 4014430 4019570 NC_060937.1 CM021580.2 98.31 True indel: indel (> 5bp) 3999708 4010023 4019571 4029886 NC_060937.1 CM021580.2 99.65 True local misassembly 4011158 4015029 4029887 4033758 NC_060937.1 CM021580.2 98.58 True local misassembly 4015198 4016345 4033759 4034906 NC_060937.1 CM021580.2 97.56 True local misassembly 4016376 4039914 4035902 4059775 NC_060937.1 CM021580.2 98.25 True indel: stretch of mismatches 4039915 4069977 4059776 4089881 NC_060937.1 CM021580.2 99.44 True fake: not a misassembly (possible transposable element) 2207975 2212106 4089882 4094011 NC_060937.1 CM021580.2 98.87 True fake: not a misassembly (possible transposable element) 4074110 4089254 4094012 4109115 NC_060937.1 CM021580.2 98.81 True relocation, inconsistency = -1369719 2719719 2720725 4109299 4110305 NC_060937.1 CM021580.2 99.7 True local misassembly 2720726 2721719 4110432 4111425 NC_060937.1 CM021580.2 99.8 True local misassembly 2721846 2723906 4111426 4113486 NC_060937.1 CM021580.2 98.69 True relocation, inconsistency = 1369760 4093678 4107447 4113498 4127267 NC_060937.1 CM021580.2 99.46 True fake: not a misassembly (possible transposable element) 2722469 2728260 4127720 4133511 NC_060937.1 CM021580.2 99.45 True fake: not a misassembly (possible transposable element) 4113734 4127377 4133660 4147262 NC_060937.1 CM021580.2 98.97 True relocation, inconsistency = -2618156 1510031 1511351 4148072 4149392 NC_060937.1 CM021580.2 97.8 True local misassembly 1511840 1516737 4149509 4154406 NC_060937.1 CM021580.2 99.36 True relocation, inconsistency = 2617777 4134515 4153137 4154407 4172866 NC_060937.1 CM021580.2 98.32 True fake: not a misassembly (possible transposable element) 2886656 2887495 4172867 4173705 NC_060937.1 CM021580.2 99.05 True fake: not a misassembly (possible transposable element) 4155109 4298872 4174836 4318471 NC_060937.1 CM021580.2 99.71 True fake: not a misassembly (possible transposable element) 1624462 1625080 4318999 4319617 NC_060937.1 CM021580.2 97.58 True fake: not a misassembly (possible transposable element) 4300790 4311820 4320398 4331429 NC_060937.1 CM021580.2 99.87 True indel: stretch of mismatches 4312031 4357223 4331640 4376828 NC_060937.1 CM021580.2 99.39 True relocation, inconsistency = -113119 4244105 4248684 4376829 4381408 NC_060937.1 CM021580.2 96.33 True relocation, inconsistency = -2086118 2162688 2164398 4381530 4383240 NC_060937.1 CM021580.2 98.13 True relocation, inconsistency = 1854064 4018514 4019281 4383292 4384059 NC_060937.1 CM021580.2 98.41 True relocation, inconsistency = 345130 4364412 4419142 4384060 4438623 NC_060937.1 CM021580.2 99.38 True fake: not a misassembly (possible transposable element) 2941089 2945901 4438624 4443306 NC_060937.1 CM021580.2 96.99 True fake: not a misassembly (possible transposable element) 4423775 4442819 4443670 4462331 NC_060937.1 CM021580.2 97.42 True indel: indel (<= 5bp) 4442913 4443624 4462426 4463137 NC_060937.1 CM021580.2 97.61 True local misassembly 4444543 4446761 4463894 4466112 NC_060937.1 CM021580.2 98.6 True local misassembly 4447398 4448230 4466668 4467500 NC_060937.1 CM021580.2 98.32 True indel: stretch of mismatches 4448609 4454215 4467879 4473485 NC_060937.1 CM021580.2 99.71 True indel: indel (<= 5bp) 4454216 4456151 4473487 4475422 NC_060937.1 CM021580.2 99.43 True local misassembly 4456152 4456728 4475801 4476377 NC_060937.1 CM021580.2 99.13 True indel: indel (<= 5bp) 4456729 4458201 4476380 4477852 NC_060937.1 CM021580.2 99.86 True local misassembly 4458495 4459327 4477853 4478685 NC_060937.1 CM021580.2 99.04 True local misassembly 4460037 4460636 4479773 4480372 NC_060937.1 CM021580.2 99.83 True local misassembly 4461374 4467704 4480739 4487069 NC_060937.1 CM021580.2 99.68 True local misassembly 4468835 4469460 4488198 4488823 NC_060937.1 CM021580.2 98.08 True local misassembly 4470041 4470795 4489409 4490163 NC_060937.1 CM021580.2 99.07 True indel: indel (<= 5bp) 4470796 4471504 4490165 4490873 NC_060937.1 CM021580.2 98.73 True indel: indel (<= 5bp) 4471505 4472218 4490876 4491589 NC_060937.1 CM021580.2 98.6 True indel: indel (<= 5bp) 4472219 4474646 4491591 4494018 NC_060937.1 CM021580.2 98.64 True indel: indel (<= 5bp) 4474647 4475401 4494020 4494774 NC_060937.1 CM021580.2 98.54 True indel: indel (<= 5bp) 4475402 4476110 4494776 4495484 NC_060937.1 CM021580.2 98.59 True indel: indel (<= 5bp) 4476111 4477372 4495487 4496748 NC_060937.1 CM021580.2 98.18 True indel: indel (<= 5bp) 4477373 4477952 4496754 4497333 NC_060937.1 CM021580.2 98.62 True indel: indel (<= 5bp) 4477953 4478849 4497335 4498231 NC_060937.1 CM021580.2 98.33 True local misassembly 4502194 4509186 4521568 4528560 NC_060937.1 CM021580.2 98.58 True local misassembly 4509938 4512488 4528561 4531111 NC_060937.1 CM021580.2 99.29 True indel: indel (> 5bp) 4512531 4514494 4531112 4533075 NC_060937.1 CM021580.2 96.79 True local misassembly 4514704 4529207 4534039 4548434 NC_060937.1 CM021580.2 98.15 True local misassembly 4529820 4581358 4549041 4600493 NC_060937.1 CM021580.2 97.98 True indel: indel (<= 5bp) 4581514 4595551 4600647 4614684 NC_060937.1 CM021580.2 99.16 True local misassembly 4597296 4615935 4616308 4634896 NC_060937.1 CM021580.2 99.23 True local misassembly 4643377 4653862 4662348 4672834 NC_060937.1 CM021580.2 99.38 True local misassembly 4657229 4661508 4672835 4677114 NC_060937.1 CM021580.2 99.89 True local misassembly 4662003 4678292 4680981 4697270 NC_060937.1 CM021580.2 99.85 True fake: not a misassembly (possible transposable element) 1924276 1927824 4697271 4700776 NC_060945.1 CM021580.2 96.27 True fake: not a misassembly (possible transposable element) 4683211 4714603 4702192 4733595 NC_060937.1 CM021580.2 97.02 True fake: not a misassembly (possible transposable element) 3424454 3425200 4733596 4734342 NC_060937.1 CM021580.2 99.06 True fake: not a misassembly (possible transposable element) 4721412 4723542 4739237 4741357 NC_060937.1 CM021580.2 97.84 True fake: not a misassembly (possible transposable element) 2066650 2068535 4741710 4743553 NC_060937.1 CM021580.2 96.74 True fake: not a misassembly (possible transposable element) 4724816 4731731 4743554 4750469 NC_060937.1 CM021580.2 99.88 True relocation, inconsistency = 87733 4819465 4821837 4752842 4750470 NC_060937.1 CM021580.2 98.61 True local misassembly 4818110 4819464 4754576 4753222 NC_060937.1 CM021580.2 99.19 True local misassembly 4817466 4818109 4755593 4754950 NC_060937.1 CM021580.2 99.38 True indel: indel (> 5bp) 4815334 4817423 4757683 4755594 NC_060937.1 CM021580.2 99.57 True local misassembly 4812354 4813487 4758818 4757684 NC_060937.1 CM021580.2 98.9 True relocation, inconsistency = 60980 4740155 4751373 4758819 4770043 NC_060937.1 CM021580.2 99.38 True relocation, inconsistency = 63960 4815334 4818680 4773385 4770044 NC_060937.1 CM021580.2 98.89 True local misassembly 4812261 4813487 4774612 4773386 NC_060937.1 CM021580.2 98.96 True relocation, inconsistency = 2385705 2424040 2425493 4777133 4775675 NC_060937.1 CM021580.2 96.3 True relocation, inconsistency = -2243552 4666573 4667219 4778152 4777506 NC_060937.1 CM021580.2 97.47 True relocation, inconsistency = 92187 4759407 4765484 4778153 4784230 NC_060937.1 CM021580.2 99.77 True local misassembly 4765696 4767242 4784813 4786359 NC_060937.1 CM021580.2 98.51 True indel: indel (> 5bp) 4767428 4768512 4786552 4787636 NC_060937.1 CM021580.2 98.99 True indel: indel (<= 5bp) 4768514 4769115 4787637 4788238 NC_060937.1 CM021580.2 96.51 True local misassembly 4769636 4770418 4788384 4789166 NC_060937.1 CM021580.2 98.85 True indel: indel (<= 5bp) 4770419 4772486 4789168 4791235 NC_060937.1 CM021580.2 99.87 True fake: not a misassembly (possible transposable element) 94790593 94797019 4791236 4797692 NC_060927.1 CM021580.2 95.86 True fake: not a misassembly (possible transposable element) 4779060 4779641 4797693 4798274 NC_060937.1 CM021580.2 96.79 True local misassembly 4780245 4782071 4798878 4800704 NC_060937.1 CM021580.2 98.58 True local misassembly 4782192 4783157 4801208 4802173 NC_060937.1 CM021580.2 99.17 True indel: indel (<= 5bp) 4783162 4784155 4802174 4803167 NC_060937.1 CM021580.2 99.5 True local misassembly 4784534 4787852 4803168 4806486 NC_060937.1 CM021580.2 99.52 True fake: not a misassembly (possible transposable element) 4794959 4797817 4806493 4809348 NC_060937.1 CM021580.2 98.22 True fake: not a misassembly (possible transposable element) 4790816 4809821 4809569 4828487 NC_060937.1 CM021580.2 98.74 True indel: stretch of mismatches 4809822 4822090 4828488 4840752 NC_060937.1 CM021580.2 98.7 True local misassembly 4826549 4864929 4845215 4882996 NC_060937.1 CM021580.2 97.85 True local misassembly 4865337 4898079 4883779 4916520 NC_060937.1 CM021580.2 96.95 True indel: stretch of mismatches 4898080 4911079 4916521 4929435 NC_060937.1 CM021580.2 98.27 True indel: stretch of mismatches 4911080 4923200 4929436 4941506 NC_060937.1 CM021580.2 98.39 True fake: not a misassembly (possible transposable element) 1729498 1733750 4941507 4945752 NC_060945.1 CM021580.2 97.04 True fake: not a misassembly (possible transposable element) 4930368 4954428 4948671 4972735 NC_060937.1 CM021580.2 99.53 True indel: stretch of mismatches 4954429 4959804 4972736 4978111 NC_060937.1 CM021580.2 99.02 True fake: not a misassembly (possible transposable element) 816539 817657 4980898 4982016 NC_060937.1 CM021580.2 97.5 True fake: not a misassembly (possible transposable element) 4963831 4969273 4983635 4989082 NC_060937.1 CM021580.2 99.2 True local misassembly 4970786 5287278 4989083 5305179 NC_060937.1 CM021580.2 99.54 True relocation, inconsistency = 29381 5316684 5388062 5305204 5376785 NC_060937.1 CM021580.2 99.09 True local misassembly 5390041 5608823 5376786 5595382 NC_060937.1 CM021580.2 99.44 True indel: stretch of mismatches 5608874 5774301 5595433 5760789 NC_060937.1 CM021580.2 99.56 True indel: stretch of mismatches 5774302 6342607 5760790 6328842 NC_060937.1 CM021580.2 99.81 True indel: stretch of mismatches 6342971 6476452 6329206 6462641 NC_060937.1 CM021580.2 99.76 True indel: indel (> 5bp) 6476576 6706628 6462757 6692695 NC_060937.1 CM021580.2 99.74 True relocation, inconsistency = 1080310 7786939 8355252 6692696 7261087 NC_060937.1 CM021580.2 99.92 True indel: indel (> 5bp) 8355376 8556769 7261203 7462555 NC_060937.1 CM021580.2 99.94 True relocation, inconsistency = -2583350 5973420 6142992 7462556 7632051 NC_060937.1 CM021580.2 99.84 True indel: stretch of mismatches 6142993 6946152 7632052 8434900 NC_060937.1 CM021580.2 99.84 True relocation, inconsistency = 1315168 8261436 8446916 8435016 8620455 NC_060937.1 CM021580.2 99.86 True translocation 5618985 5619815 8620456 8621279 NC_060946.1 CM021580.2 99.07 True translocation 5770549 5912812 8621280 8763576 NC_060937.1 CM021580.2 99.76 True indel: stretch of mismatches 5912928 6006752 8763692 8857490 NC_060937.1 CM021580.2 99.62 True indel: indel (> 5bp) 6006876 6239326 8857606 9090077 NC_060937.1 CM021580.2 99.92 True relocation, inconsistency = 2865170 9104497 9157145 9090078 9142729 NC_060937.1 CM021580.2 99.5 True indel: stretch of mismatches 9157146 9199266 9142730 9184925 NC_060937.1 CM021580.2 98.78 True indel: indel (<= 5bp) 9199386 9216389 9185049 9202057 NC_060937.1 CM021580.2 99.33 True indel: indel (> 5bp) 9216621 9310025 9202354 9295835 NC_060937.1 CM021580.2 98.9 True translocation 4669411 5175399 9295836 9801929 NC_060939.1 CM021580.2 99.83 True translocation 9832837 9834666 9821337 9823162 NC_060937.1 CM021580.2 95.2 True indel: indel (> 5bp) 9834707 10205659 9823163 10194337 NC_060937.1 CM021580.2 99.63 True relocation, inconsistency = -28845 10176815 10252625 10194338 10270056 NC_060937.1 CM021580.2 97.63 True local misassembly 10253070 10291233 10270905 10309282 NC_060937.1 CM021580.2 98.51 True relocation, inconsistency = 61174 10353476 10375304 10310351 10332184 NC_060937.1 CM021580.2 98.87 True relocation, inconsistency = -79503 10295948 10325671 10332331 10362314 NC_060937.1 CM021580.2 98.56 True local misassembly 10326506 10375304 10362315 10411124 NC_060937.1 CM021580.2 98.79 True relocation, inconsistency = -79503 10295948 10325671 10411271 10441234 NC_060937.1 CM021580.2 98.56 True local misassembly 10326506 10375049 10441235 10489360 NC_060937.1 CM021580.2 97.77 True local misassembly 10375464 10401151 10491851 10517498 NC_060937.1 CM021580.2 99.03 True local misassembly 10403947 10463412 10517499 10577276 NC_060937.1 CM021580.2 99.37 True indel: indel (<= 5bp) 10463565 10671665 10577432 10785550 NC_060937.1 CM021580.2 99.89 True relocation, inconsistency = -21840 10649826 10671634 10785551 10806953 NC_060937.1 CM021580.2 97.74 True relocation, inconsistency = -21840 10649795 10701012 10806954 10857770 NC_060937.1 CM021580.2 98.97 True translocation 7817024 7817556 10858727 10859259 NC_060946.1 CM021580.2 98.5 True indel: indel (> 5bp) 7817823 7819469 10859501 10861147 NC_060946.1 CM021580.2 97.87 True translocation 49606661 49607165 10861148 10861652 NC_060928.1 CM021580.2 99.05 True indel: indel (> 5bp) 49607166 49607738 10861667 10862239 NC_060928.1 CM021580.2 99.48 True indel: indel (> 5bp) 49607739 49608299 10862275 10862835 NC_060928.1 CM021580.2 98.75 True local misassembly 49609239 49609810 10863795 10864366 NC_060928.1 CM021580.2 99.48 True indel: indel (<= 5bp) 49609811 49610316 10864372 10864877 NC_060928.1 CM021580.2 99.41 True translocation 7824626 7825625 10866273 10867272 NC_060946.1 CM021580.2 98.8 True local misassembly 7827129 7827757 10868750 10869378 NC_060946.1 CM021580.2 97.77 True relocation, inconsistency = 4260423 3561613 3562264 10874471 10873820 NC_060946.1 CM021580.2 97.55 True translocation 10700977 10731172 10876414 10906679 NC_060937.1 CM021580.2 99.53 True local misassembly 10729570 11764005 10906680 11941497 NC_060937.1 CM021580.2 99.74 True local misassembly 11767416 11789686 11944915 11966837 NC_060937.1 CM021580.2 97.83 True local misassembly 11790306 11796004 11967457 11973153 NC_060937.1 CM021580.2 99.82 True indel: indel (<= 5bp) 11796162 11816143 11973310 11993289 NC_060937.1 CM021580.2 99.62 True local misassembly 11817014 11817851 11994160 11994997 NC_060937.1 CM021580.2 98.21 True indel: stretch of mismatches 11817921 11825431 11995067 12002581 NC_060937.1 CM021580.2 99.07 True indel: stretch of mismatches 11825586 11830858 12002736 12008008 NC_060937.1 CM021580.2 99.79 True indel: indel (<= 5bp) 11830860 11834730 12008009 12011879 NC_060937.1 CM021580.2 99.38 True local misassembly 11834902 11835929 12011880 12012907 NC_060937.1 CM021580.2 98.25 True local misassembly 11836269 11837013 12012908 12013652 NC_060937.1 CM021580.2 98.39 True local misassembly 11837981 11839152 12014909 12016080 NC_060937.1 CM021580.2 99.83 True indel: stretch of mismatches 11839414 11841492 12016342 12018420 NC_060937.1 CM021580.2 99.9 True indel: indel (<= 5bp) 11841665 12345873 12018588 12522817 NC_060937.1 CM021580.2 99.46 True indel: stretch of mismatches 12345880 12433512 12522824 12610508 NC_060937.1 CM021580.2 98.5 True indel: indel (> 5bp) 12433676 13980303 12610679 14157629 NC_060937.1 CM021580.2 99.78 True indel: stretch of mismatches 13980400 13983613 14157726 14160939 NC_060937.1 CM021580.2 97.26 True indel: indel (<= 5bp) 13983906 13993856 14161230 14171135 NC_060937.1 CM021580.2 97.95 True indel: stretch of mismatches 13994033 14047480 14171312 14224759 NC_060937.1 CM021580.2 99.81 True relocation, inconsistency = 30369 14077850 14086481 14224760 14233396 NC_060937.1 CM021580.2 99.11 True relocation, inconsistency = 19725 14106207 14135928 14233397 14263119 NC_060937.1 CM021580.2 99.89 True local misassembly 14133840 14139632 14263120 14268618 NC_060937.1 CM021580.2 96.63 True relocation, inconsistency = 23202 14162835 14292028 14268619 14397812 NC_060937.1 CM021580.2 99.91 True local misassembly 14294807 14309159 14400590 14414942 NC_060937.1 CM021580.2 99.39 True local misassembly 14311374 14356213 14417153 14461983 NC_060937.1 CM021580.2 99.58 True relocation, inconsistency = 645687 15001901 15003605 14461984 14463688 NC_060937.1 CM021580.2 99.52 True relocation, inconsistency = -758800 14244806 14265607 14463689 14484495 NC_060937.1 CM021580.2 99.29 True relocation, inconsistency = 590859 14856467 14895890 14484496 14523919 NC_060937.1 CM021580.2 99.71 True relocation, inconsistency = -542689 14353202 14375757 14523920 14546436 NC_060937.1 CM021580.2 99.18 True relocation, inconsistency = 970949 15346707 15348714 14546437 14548444 NC_060937.1 CM021580.2 98.14 True relocation, inconsistency = 107425 15456552 15458764 14548857 14551069 NC_060937.1 CM021580.2 98.45 True local misassembly 15454706 15456708 14551070 14553071 NC_060937.1 CM021580.2 98.34 True relocation, inconsistency = -1074190 14382519 14581048 14553072 14751598 NC_060937.1 CM021580.2 99.91 True local misassembly 14582532 14593626 14753053 14764147 NC_060937.1 CM021580.2 99.94 True local misassembly 14594062 14685240 14764416 14855584 NC_060937.1 CM021580.2 99.85 True indel: stretch of mismatches 14685241 14818921 14855585 14989259 NC_060937.1 CM021580.2 99.89 True indel: indel (> 5bp) 14819188 14908322 14989441 15078570 NC_060937.1 CM021580.2 99.82 True relocation, inconsistency = 508370 15417399 15421694 15079277 15083569 NC_060937.1 CM021580.2 98.17 True relocation, inconsistency = -30535 15391160 15398457 15083570 15090837 NC_060937.1 CM021580.2 98.19 True relocation, inconsistency = -477832 14920626 14950465 15090838 15120677 NC_060937.1 CM021580.2 99.83 True fake: not a misassembly (possible transposable element) 15035628 15039513 15120678 15124562 NC_060937.1 CM021580.2 99.77 True fake: not a misassembly (possible transposable element) 14954475 14960838 15124563 15130928 NC_060937.1 CM021580.2 98.7 True local misassembly 14964237 15034795 15134290 15204844 NC_060937.1 CM021580.2 99.85 True indel: indel (> 5bp) 15035251 15052162 15205341 15222255 NC_060937.1 CM021580.2 99.51 True indel: stretch of mismatches 15052163 15093062 15222256 15263051 NC_060937.1 CM021580.2 98.69 True fake: not a misassembly (possible transposable element) 15308267 15309098 15263052 15263882 NC_060937.1 CM021580.2 97.45 True fake: not a misassembly (possible transposable element) 15093824 15220833 15264022 15390904 NC_060937.1 CM021580.2 99.77 True fake: not a misassembly (possible transposable element) 15303503 15309519 15392544 15398559 NC_060937.1 CM021580.2 98.45 True fake: not a misassembly (possible transposable element) 15228860 15295460 15398793 15465393 NC_060937.1 CM021580.2 99.8 True relocation, inconsistency = -13161 15282300 15300622 15465394 15483632 NC_060937.1 CM021580.2 98.93 True relocation, inconsistency = 182289 15482912 15509333 15483633 15510053 NC_060937.1 CM021580.2 99.5 True relocation, inconsistency = -213884 15295450 15332812 15510054 15547415 NC_060937.1 CM021580.2 99.74 True relocation, inconsistency = -1360512 13973781 13978559 15548896 15553664 NC_060937.1 CM021580.2 98.14 True local misassembly 13972525 13980235 15553665 15561366 NC_060937.1 CM021580.2 98.34 True relocation, inconsistency = 1411310 15391546 15398117 15561367 15567929 NC_060937.1 CM021580.2 98.47 True relocation, inconsistency = -44737 15353381 15511424 15567930 15725963 NC_060937.1 CM021580.2 99.8 True indel: stretch of mismatches 15511565 15524634 15726104 15739173 NC_060937.1 CM021580.2 99.99 True indel: indel (<= 5bp) 15524896 15550558 15739437 15765097 NC_060937.1 CM021580.2 99.83 True indel: stretch of mismatches 15550559 15558012 15765098 15772551 NC_060937.1 CM021580.2 99.9 True local misassembly 15556734 15566672 15773141 15783079 NC_060937.1 CM021580.2 99.98 True local misassembly 15569221 15576412 15783080 15790271 NC_060937.1 CM021580.2 99.96 True relocation, inconsistency = 1812296 17388709 17392956 15790272 15794519 NC_060937.1 CM021580.2 99.59 True translocation 10981310 11001510 15795534 15815732 NC_060945.1 CM021580.2 99.01 True translocation 15599537 15605314 15819008 15824785 NC_060937.1 CM021580.2 99.97 True translocation 10981595 10991470 15834743 15844618 NC_060945.1 CM021580.2 99.0 True indel: stretch of mismatches 10991663 10996576 15844811 15849724 NC_060945.1 CM021580.2 98.94 True translocation 15691478 15698397 15851288 15858207 NC_060937.1 CM021580.2 99.94 True relocation, inconsistency = -60851 15637937 15644552 15858598 15865215 NC_060937.1 CM021580.2 99.83 True fake: not a misassembly (possible transposable element) 15676168 15677384 15865216 15866432 NC_060937.1 CM021580.2 99.89 True fake: not a misassembly (possible transposable element) 15651210 15656988 15866433 15872211 NC_060937.1 CM021580.2 99.81 True local misassembly 15661239 15663446 15872212 15874419 NC_060937.1 CM021580.2 99.76 True relocation, inconsistency = -12237 15651210 15656050 15874420 15879260 NC_060937.1 CM021580.2 99.95 True indel: stretch of mismatches 15656051 15671407 15879261 15894617 NC_060937.1 CM021580.2 99.98 True relocation, inconsistency = 31448 15702856 15710600 15894618 15902362 NC_060937.1 CM021580.2 99.96 True local misassembly 15711806 15715883 15903568 15907645 NC_060937.1 CM021580.2 99.93 True local misassembly 15716790 15724913 15908551 15916674 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = -103172 15621742 15624340 15916675 15919273 NC_060937.1 CM021580.2 95.25 True relocation, inconsistency = 67137 15691478 15701665 15919274 15929461 NC_060937.1 CM021580.2 99.82 True relocation, inconsistency = 28385 15730051 15731094 15929462 15930505 NC_060937.1 CM021580.2 99.87 True indel: stretch of mismatches 15731095 15738508 15930506 15937919 NC_060937.1 CM021580.2 99.95 True fake: not a misassembly (possible transposable element) 15765701 15768758 15937920 15940977 NC_060937.1 CM021580.2 99.8 True fake: not a misassembly (possible transposable element) 15748506 15753179 15941123 15945796 NC_060937.1 CM021580.2 99.97 True relocation, inconsistency = 8670 15761850 15764726 15945797 15948673 NC_060937.1 CM021580.2 99.97 True local misassembly 15770843 15781393 15948674 15959224 NC_060937.1 CM021580.2 99.94 True fake: not a misassembly (possible transposable element) 15733308 15735723 15959225 15961640 NC_060937.1 CM021580.2 99.79 True fake: not a misassembly (possible transposable element) 15781944 15787871 15961641 15967568 NC_060937.1 CM021580.2 100.0 True local misassembly 15783628 15785374 15967569 15969319 NC_060937.1 CM021580.2 99.88 True translocation 11171237 11174214 15982723 15985700 NC_060945.1 CM021580.2 98.8 True relocation, inconsistency = -58285 11115930 11131686 15985701 16001460 NC_060945.1 CM021580.2 98.8 True relocation, inconsistency = 58618 11190305 11192128 16001461 16003284 NC_060945.1 CM021580.2 98.96 True local misassembly 11192469 11193414 16003285 16004230 NC_060945.1 CM021580.2 98.39 True translocation 16363098 16366445 16004231 16007578 NC_060937.1 CM021580.2 99.76 True relocation, inconsistency = -109616 16257426 16265084 16008175 16015835 NC_060937.1 CM021580.2 99.63 True relocation, inconsistency = -263268 16001817 16002737 16015836 16016756 NC_060937.1 CM021580.2 99.49 True translocation 11110323 11129817 16018337 16037836 NC_060945.1 CM021580.2 98.78 True relocation, inconsistency = -151278 10981310 10983319 16040607 16042616 NC_060945.1 CM021580.2 98.91 True translocation 15885528 15891693 16042617 16048784 NC_060937.1 CM021580.2 99.74 True relocation, inconsistency = -29563 15863038 15873856 16049692 16060510 NC_060937.1 CM021580.2 99.97 True indel: stretch of mismatches 15873857 15878180 16060511 16064834 NC_060937.1 CM021580.2 100.0 True local misassembly 15872686 15878180 16065454 16070948 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 15929575 15931650 16073232 16075307 NC_060937.1 CM021580.2 99.7 True fake: not a misassembly (possible transposable element) 15882540 15893563 16075308 16086331 NC_060937.1 CM021580.2 99.98 True fake: not a misassembly (possible transposable element) 17437354 17440931 16087711 16091288 NC_060937.1 CM021580.2 99.68 True fake: not a misassembly (possible transposable element) 15898521 15905289 16091289 16098057 NC_060937.1 CM021580.2 99.93 True local misassembly 15905829 15912628 16098597 16105396 NC_060937.1 CM021580.2 99.96 True indel: stretch of mismatches 15912629 15928940 16105397 16121712 NC_060937.1 CM021580.2 99.94 True indel: stretch of mismatches 15928941 15934040 16121713 16126812 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 15934041 15942298 16126813 16135070 NC_060937.1 CM021580.2 99.99 True relocation, inconsistency = -25156 15917143 15928940 16135071 16146868 NC_060937.1 CM021580.2 99.92 True indel: stretch of mismatches 15928941 15934040 16146869 16151968 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 15934041 15943596 16151969 16161524 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = -8668 15934929 15943462 16161525 16170058 NC_060937.1 CM021580.2 99.81 True relocation, inconsistency = 11728 15955191 15961098 16170059 16175966 NC_060937.1 CM021580.2 99.96 True indel: stretch of mismatches 15961099 15965507 16175967 16180375 NC_060937.1 CM021580.2 100.0 True local misassembly 15966341 15971797 16181209 16186665 NC_060937.1 CM021580.2 99.98 True fake: not a misassembly (possible transposable element) 16001258 16007931 16199298 16205971 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 15995288 16007931 16207776 16220419 NC_060937.1 CM021580.2 99.98 True local misassembly 16008546 16015881 16221034 16228369 NC_060937.1 CM021580.2 99.99 True local misassembly 16020440 16031689 16232928 16244177 NC_060937.1 CM021580.2 99.95 True relocation, inconsistency = -46574 15995494 16001547 16254556 16260609 NC_060937.1 CM021580.2 99.93 True local misassembly 16008752 16013819 16267984 16273053 NC_060937.1 CM021580.2 99.78 True relocation, inconsistency = 46745 16060565 16068537 16273054 16281026 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = -8842 16061260 16064317 16282591 16285648 NC_060937.1 CM021580.2 99.93 True local misassembly 16069758 16082692 16285649 16298583 NC_060937.1 CM021580.2 99.92 True indel: stretch of mismatches 16082693 16089987 16298584 16305878 NC_060937.1 CM021580.2 99.99 True local misassembly 16092939 16103592 16308548 16319201 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = 297426 16401019 16409440 16319202 16327623 NC_060937.1 CM021580.2 99.94 True relocation, inconsistency = 743656 17156214 17158435 16330741 16332962 NC_060937.1 CM021580.2 99.67 True relocation, inconsistency = -1041082 16117354 16122217 16332963 16337826 NC_060937.1 CM021580.2 99.86 True local misassembly 16121212 16127959 16337838 16344585 NC_060937.1 CM021580.2 99.97 True indel: stretch of mismatches 16128020 16140982 16344646 16357608 NC_060937.1 CM021580.2 99.98 True indel: stretch of mismatches 16140983 16151116 16357609 16367742 NC_060937.1 CM021580.2 99.92 True local misassembly 16157405 16162857 16367743 16373195 NC_060937.1 CM021580.2 99.88 True indel: stretch of mismatches 16162858 16167767 16373196 16378105 NC_060937.1 CM021580.2 99.89 True relocation, inconsistency = -46740 16121624 16127959 16378702 16385037 NC_060937.1 CM021580.2 99.95 True relocation, inconsistency = -261174 15866786 15868035 16385038 16386287 NC_060937.1 CM021580.2 99.46 True relocation, inconsistency = 301796 16169832 16180414 16386288 16396870 NC_060937.1 CM021580.2 99.98 True indel: stretch of mismatches 16180415 16188836 16396871 16405292 NC_060937.1 CM021580.2 100.0 True local misassembly 16199127 16203207 16408781 16412861 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16203208 16209543 16412862 16419197 NC_060937.1 CM021580.2 99.98 True local misassembly 16214364 16219831 16424018 16429485 NC_060937.1 CM021580.2 99.96 True indel: stretch of mismatches 16219832 16229798 16429486 16439452 NC_060937.1 CM021580.2 99.97 True local misassembly 16241220 16247462 16450873 16457115 NC_060937.1 CM021580.2 99.78 True relocation, inconsistency = -634182 15613550 15614990 16457385 16458820 NC_060937.1 CM021580.2 99.27 True relocation, inconsistency = 76487 15691478 15701665 16458821 16469010 NC_060937.1 CM021580.2 99.75 True relocation, inconsistency = 28385 15730051 15731094 16469011 16470054 NC_060937.1 CM021580.2 99.87 True indel: stretch of mismatches 15731095 15738141 16470055 16477103 NC_060937.1 CM021580.2 99.87 True local misassembly 15735084 15738508 16477104 16480528 NC_060937.1 CM021580.2 99.83 True relocation, inconsistency = 18522 15757176 15761849 16480674 16485347 NC_060937.1 CM021580.2 99.97 True indel: stretch of mismatches 15761850 15764726 16485348 16488224 NC_060937.1 CM021580.2 99.97 True local misassembly 15770843 15781393 16488225 16498775 NC_060937.1 CM021580.2 99.94 True fake: not a misassembly (possible transposable element) 15733308 15735723 16498776 16501191 NC_060937.1 CM021580.2 99.79 True fake: not a misassembly (possible transposable element) 15781944 15787871 16501192 16507119 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 15787872 15791677 16507120 16510925 NC_060937.1 CM021580.2 99.98 True relocation, inconsistency = 1663592 17465909 17474634 16521565 16530290 NC_060937.1 CM021580.2 99.56 True relocation, inconsistency = -1205425 16269210 16284753 16530291 16545834 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 16284754 16289762 16545835 16550843 NC_060937.1 CM021580.2 100.0 True local misassembly 16290306 16294744 16551387 16555825 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16294745 16301069 16555826 16562150 NC_060937.1 CM021580.2 100.0 True local misassembly 16307198 16314173 16568279 16575254 NC_060937.1 CM021580.2 99.97 True fake: not a misassembly (possible transposable element) 16020440 16025144 16576397 16581101 NC_060937.1 CM021580.2 99.87 True fake: not a misassembly (possible transposable element) 16318831 16332694 16581102 16594965 NC_060937.1 CM021580.2 99.94 True relocation, inconsistency = -10366 16322329 16332291 16594966 16604928 NC_060937.1 CM021580.2 99.89 True relocation, inconsistency = -313062 16021826 16031689 16607525 16617388 NC_060937.1 CM021580.2 99.96 True relocation, inconsistency = 317480 16349200 16363783 16617419 16632002 NC_060937.1 CM021580.2 99.99 True relocation, inconsistency = -247966 16115818 16118189 16632003 16634374 NC_060937.1 CM021580.2 99.79 True relocation, inconsistency = 22096 16140286 16149241 16634375 16643330 NC_060937.1 CM021580.2 99.84 True relocation, inconsistency = 222812 16376900 16383235 16648177 16654512 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 17387343 17391422 16664289 16668370 NC_060937.1 CM021580.2 99.56 True fake: not a misassembly (possible transposable element) 16399474 16409440 16668371 16678337 NC_060937.1 CM021580.2 99.99 True fake: not a misassembly (possible transposable element) 16292851 16296518 16678338 16682005 NC_060937.1 CM021580.2 99.9 True fake: not a misassembly (possible transposable element) 16411574 16417909 16683531 16689866 NC_060937.1 CM021580.2 99.94 True indel: stretch of mismatches 16417970 16428169 16689927 16700126 NC_060937.1 CM021580.2 99.95 True indel: stretch of mismatches 16428170 16441401 16700127 16713358 NC_060937.1 CM021580.2 99.95 True local misassembly 16447520 16448402 16713359 16714241 NC_060937.1 CM021580.2 99.83 True local misassembly 16442286 16453521 16714242 16725477 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 16011634 16014038 16725478 16727882 NC_060937.1 CM021580.2 99.92 True fake: not a misassembly (possible transposable element) 16455927 16462017 16727883 16733973 NC_060937.1 CM021580.2 99.95 True local misassembly 16464039 16470547 16735995 16742503 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 16470548 16480214 16742504 16752170 NC_060937.1 CM021580.2 99.98 True indel: stretch of mismatches 16480234 16487859 16752190 16759815 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16487860 16489555 16759816 16761511 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16489556 16495606 16761512 16767562 NC_060937.1 CM021580.2 99.98 True local misassembly 16499858 16507025 16771814 16778981 NC_060937.1 CM021580.2 99.94 True indel: stretch of mismatches 16507026 16516909 16778982 16788865 NC_060937.1 CM021580.2 99.94 True translocation 10981310 10995879 16788866 16803433 NC_060945.1 CM021580.2 98.92 True translocation 16560440 16565305 16836818 16841683 NC_060937.1 CM021580.2 99.98 True relocation, inconsistency = 13600 16595931 16601893 16858709 16864673 NC_060937.1 CM021580.2 99.9 True relocation, inconsistency = 662569 17266719 17272918 16866930 16873131 NC_060937.1 CM021580.2 99.48 True relocation, inconsistency = 203439 17479128 17480097 16875902 16876871 NC_060937.1 CM021580.2 98.25 True relocation, inconsistency = -866003 16614288 16622215 16877065 16884992 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 16622216 16625645 16884993 16888422 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 16625646 16635060 16888423 16897836 NC_060937.1 CM021580.2 99.98 True fake: not a misassembly (possible transposable element) 17478617 17480780 16900710 16902874 NC_060937.1 CM021580.2 98.38 True fake: not a misassembly (possible transposable element) 16652199 16661548 16914975 16924324 NC_060937.1 CM021580.2 100.0 True local misassembly 16664669 16673678 16927445 16936454 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16673679 16687626 16936455 16950402 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 16666055 16671436 16952627 16958008 NC_060937.1 CM021580.2 99.88 True fake: not a misassembly (possible transposable element) 16695233 16702892 16958009 16965668 NC_060937.1 CM021580.2 99.82 True relocation, inconsistency = 787407 17490300 17490905 16965669 16966274 NC_060937.1 CM021580.2 98.26 True translocation 11031681 11037288 16966275 16971882 NC_060945.1 CM021580.2 98.63 True local misassembly 11038090 11042119 16972512 16976541 NC_060945.1 CM021580.2 98.93 True local misassembly 11043700 11054117 16978122 16988543 NC_060945.1 CM021580.2 98.68 True indel: stretch of mismatches 11054207 11056907 16988633 16991334 NC_060945.1 CM021580.2 98.63 True local misassembly 11057858 11061325 16992282 16995750 NC_060945.1 CM021580.2 98.79 True relocation, inconsistency = 208353 11270401 11274442 16996473 17000512 NC_060945.1 CM021580.2 98.91 True translocation 17477612 17480780 17002273 17005440 NC_060937.1 CM021580.2 98.11 True local misassembly 17476757 17484715 17007535 17015493 NC_060937.1 CM021580.2 98.19 True relocation, inconsistency = -731149 16755927 16760722 17017854 17022649 NC_060937.1 CM021580.2 99.94 True translocation 11214151 11222092 17022650 17030591 NC_060945.1 CM021580.2 98.82 True relocation, inconsistency = -38584 11183509 11186382 17030592 17033465 NC_060945.1 CM021580.2 98.86 True local misassembly 11186721 11190010 17033466 17036755 NC_060945.1 CM021580.2 98.94 True translocation 16775339 16780117 17037267 17042045 NC_060937.1 CM021580.2 99.87 True relocation, inconsistency = 700555 17481166 17492163 17042539 17053536 NC_060937.1 CM021580.2 98.22 True translocation 11144768 11147642 17053537 17056411 NC_060945.1 CM021580.2 98.83 True local misassembly 11147981 11149684 17056412 17058115 NC_060945.1 CM021580.2 98.53 True indel: indel (<= 5bp) 11149825 11153221 17058258 17061654 NC_060945.1 CM021580.2 98.82 True translocation 17475301 17485202 17061659 17071560 NC_060937.1 CM021580.2 98.39 True local misassembly 17486824 17488099 17071993 17073268 NC_060937.1 CM021580.2 98.98 True indel: indel (<= 5bp) 17488100 17488924 17073270 17074094 NC_060937.1 CM021580.2 97.7 True translocation 10982502 10992139 17074498 17084135 NC_060945.1 CM021580.2 99.11 True translocation 16825429 16838379 17087534 17100484 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16838380 16856433 17100485 17118538 NC_060937.1 CM021580.2 100.0 True fake: not a misassembly (possible transposable element) 17439715 17442252 17118539 17121076 NC_060937.1 CM021580.2 99.83 True fake: not a misassembly (possible transposable element) 16858972 16876481 17121077 17138586 NC_060937.1 CM021580.2 100.0 True local misassembly 16884456 16888701 17142315 17146560 NC_060937.1 CM021580.2 99.92 True local misassembly 16884456 16902203 17146561 17164308 NC_060937.1 CM021580.2 100.0 True local misassembly 16903309 16938236 17165414 17200341 NC_060937.1 CM021580.2 99.98 True indel: stretch of mismatches 16938237 16942356 17200342 17204461 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 16942357 16958801 17204462 17220906 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = -631988 16326814 16332683 17220907 17226776 NC_060937.1 CM021580.2 99.87 True relocation, inconsistency = 99594 16436862 16441111 17231361 17235610 NC_060937.1 CM021580.2 99.85 True translocation 11114060 11124208 17235611 17245760 NC_060945.1 CM021580.2 98.83 True local misassembly 11119280 11122331 17245761 17248812 NC_060945.1 CM021580.2 98.96 True translocation 16964498 16970491 17249211 17255204 NC_060937.1 CM021580.2 99.93 True translocation 11144561 11146643 17255243 17257325 NC_060945.1 CM021580.2 98.99 True local misassembly 11148052 11158991 17258395 17268998 NC_060945.1 CM021580.2 95.6 True translocation 17472951 17480486 17269213 17276750 NC_060937.1 CM021580.2 98.46 True translocation 11268538 11289537 17276751 17298266 NC_060945.1 CM021580.2 96.65 True relocation, inconsistency = -141227 11148311 11149684 17298267 17299640 NC_060945.1 CM021580.2 97.84 True indel: indel (<= 5bp) 11150073 11153094 17300026 17303047 NC_060945.1 CM021580.2 98.58 True translocation 15720377 15725598 17305818 17311039 NC_060937.1 CM021580.2 99.94 True relocation, inconsistency = 1035760 16761359 16763326 17311040 17313007 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = 715171 17478498 17480780 17313008 17315291 NC_060937.1 CM021580.2 98.56 True translocation 11116776 11122331 17316694 17322249 NC_060945.1 CM021580.2 98.79 True translocation 15775769 15781393 17325028 17330652 NC_060937.1 CM021580.2 99.86 True relocation, inconsistency = 1699279 17481166 17492163 17331146 17342144 NC_060937.1 CM021580.2 98.36 True relocation, inconsistency = -8837 17483327 17486392 17342145 17345210 NC_060937.1 CM021580.2 98.63 True translocation 11114637 11118989 17345211 17349563 NC_060945.1 CM021580.2 98.91 True translocation 17474879 17485202 17349564 17359888 NC_060937.1 CM021580.2 98.42 True local misassembly 17486779 17488099 17360276 17361596 NC_060937.1 CM021580.2 98.86 True indel: indel (<= 5bp) 17488100 17488924 17361598 17362422 NC_060937.1 CM021580.2 97.58 True translocation 10982502 10992337 17362826 17372661 NC_060945.1 CM021580.2 99.1 True translocation 16727413 16729910 17373362 17375859 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = 383933 17113844 17126794 17375860 17388810 NC_060937.1 CM021580.2 99.99 True indel: stretch of mismatches 17126795 17144848 17388811 17406864 NC_060937.1 CM021580.2 99.99 True relocation, inconsistency = 154643 17299492 17302029 17406865 17409402 NC_060937.1 CM021580.2 99.83 True relocation, inconsistency = -443058 16858972 16876481 17409403 17426912 NC_060937.1 CM021580.2 100.0 True relocation, inconsistency = 288415 17166245 17180422 17428261 17442438 NC_060937.1 CM021580.2 100.0 True local misassembly 17181528 17193761 17443544 17455777 NC_060937.1 CM021580.2 99.84 True indel: stretch of mismatches 17193762 17215263 17455778 17477279 NC_060937.1 CM021580.2 99.93 True indel: stretch of mismatches 17215264 17220953 17477280 17482969 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 17221274 17238995 17483290 17501011 NC_060937.1 CM021580.2 99.93 True relocation, inconsistency = 249671 17489326 17491490 17501671 17503835 NC_060937.1 CM021580.2 98.43 True translocation 10966503 10969414 17508620 17511531 NC_060945.1 CM021580.2 98.84 True translocation 17249516 17254042 17511532 17516058 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 17254043 17263129 17516059 17525145 NC_060937.1 CM021580.2 99.98 True fake: not a misassembly (possible transposable element) 17137031 17138532 17525146 17526647 NC_060937.1 CM021580.2 99.82 True fake: not a misassembly (possible transposable element) 17264632 17283847 17526648 17545863 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 17283848 17308868 17545864 17570884 NC_060937.1 CM021580.2 100.0 True indel: stretch of mismatches 17308869 17314085 17570885 17576101 NC_060937.1 CM021580.2 99.97 True local misassembly 17315456 17324361 17577472 17586377 NC_060937.1 CM021580.2 99.94 True indel: stretch of mismatches 17324362 17328228 17586378 17590244 NC_060937.1 CM021580.2 99.84 True indel: stretch of mismatches 17328229 17338624 17590245 17600639 NC_060937.1 CM021580.2 99.93 True translocation 11270136 11274442 17600640 17604944 NC_060945.1 CM021580.2 98.74 True relocation, inconsistency = -166885 11108453 11124208 17605840 17621595 NC_060945.1 CM021580.2 98.77 True translocation 16948468 16952037 17621596 17625165 NC_060937.1 CM021580.2 99.61 True relocation, inconsistency = -728690 16224928 16228275 17626746 17630093 NC_060937.1 CM021580.2 99.58 True translocation 11035830 11037699 17630094 17631963 NC_060945.1 CM021580.2 99.03 True translocation 16356980 16362294 17634054 17639368 NC_060937.1 CM021580.2 99.65 True relocation, inconsistency = 1015065 17377360 17404014 17639369 17666023 NC_060937.1 CM021580.2 99.98 True relocation, inconsistency = 71726 17478617 17484507 17668900 17674960 NC_060937.1 CM021580.2 95.66 True relocation, inconsistency = -8670 17476629 17480780 17675752 17679905 NC_060937.1 CM021580.2 98.34 True relocation, inconsistency = -62886 17421307 17427263 17683318 17689274 NC_060937.1 CM021580.2 99.97 True indel: stretch of mismatches 17427264 17442875 17689275 17704886 NC_060937.1 CM021580.2 99.93 True local misassembly 17439818 17440699 17704887 17705770 NC_060937.1 CM021580.2 99.7 True local misassembly 17443759 17449227 17705771 17711239 NC_060937.1 CM021580.2 99.93 True local misassembly 17460056 17465080 17722070 17727093 NC_060937.1 CM021580.2 99.92 True local misassembly 17465691 17843466 17727704 18105556 NC_060937.1 CM021580.2 99.83 True translocation 14592762 14595682 18108493 18105557 NC_060942.1 CM021580.2 97.31 True translocation 17843444 18583345 18108494 18847355 NC_060937.1 CM021580.2 99.58 True indel: stretch of mismatches 18583385 18756172 18847395 19020246 NC_060937.1 CM021580.2 99.69 True indel: indel (<= 5bp) 18756254 20399360 19020325 20666209 NC_060937.1 CM021580.2 99.53 True local misassembly 20399348 20921562 20666345 21188290 NC_060937.1 CM021580.2 99.32 True local misassembly 20922617 22113630 21189351 22380181 NC_060937.1 CM021580.2 99.73 True local misassembly 22115673 22263229 22380182 22528025 NC_060937.1 CM021580.2 99.41 True local misassembly 22265664 23097158 22530561 23361360 NC_060937.1 CM021580.2 99.73 True indel: indel (<= 5bp) 23097271 23396670 23361470 23660752 NC_060937.1 CM021580.2 99.73 True local misassembly 23397454 23562788 23662145 23827447 NC_060937.1 CM021580.2 99.68 True indel: indel (<= 5bp) 23562847 28612367 23827507 28872382 NC_060937.1 CM021580.2 99.67 True indel: indel (> 5bp) 28612410 28864299 28872503 29124275 NC_060937.1 CM021580.2 99.87 True local misassembly 28870319 28872320 29124276 29126277 NC_060937.1 CM021580.2 99.73 True indel: stretch of mismatches 28872321 33959844 29126278 34208541 NC_060937.1 CM021580.2 99.7 True indel: indel (> 5bp) 33959983 34979747 34208754 35230170 NC_060937.1 CM021580.2 99.78 True indel: indel (> 5bp) 34980224 35044807 35230670 35295083 NC_060937.1 CM021580.2 99.4 True local misassembly 35044963 35176666 35295120 35426574 NC_060937.1 CM021580.2 99.55 True local misassembly 35177618 41699173 35427120 41952330 NC_060937.1 CM021580.2 99.71 True local misassembly 41699818 44599224 41952331 44854696 NC_060937.1 CM021580.2 99.65 True local misassembly 44599129 46962314 44855266 47218971 NC_060937.1 CM021580.2 99.71 True local misassembly 46961589 48539674 47218972 48797076 NC_060937.1 CM021580.2 99.89 True indel: indel (> 5bp) 48539781 48767381 48797190 49025351 NC_060937.1 CM021580.2 99.54 True indel: indel (> 5bp) 48767587 54253300 49025572 54525141 NC_060937.1 CM021580.2 99.56 True indel: indel (> 5bp) 54253467 56368701 54525286 56637962 NC_060937.1 CM021580.2 99.66 True relocation, inconsistency = -12667 56356035 60197774 56637963 60474807 NC_060937.1 CM021580.2 99.66 True local misassembly 60198554 61281659 60475485 61559928 NC_060937.1 CM021580.2 99.6 True indel: indel (> 5bp) 61281717 62666709 61560026 62943944 NC_060937.1 CM021580.2 99.75 True indel: indel (<= 5bp) 62666712 67303640 62943945 67582887 NC_060937.1 CM021580.2 99.78 True local misassembly 67304456 72430545 67584306 72706380 NC_060937.1 CM021580.2 99.58 True local misassembly 72431106 74033999 72707100 74309566 NC_060937.1 CM021580.2 99.83 True local misassembly 74034068 75542366 74309738 75818668 NC_060937.1 CM021580.2 99.72 True indel: indel (> 5bp) 75542419 75635056 75818684 75911340 NC_060937.1 CM021580.2 99.7 True local misassembly 75635210 76928972 75911401 77204371 NC_060937.1 CM021580.2 99.76 True local misassembly 76929032 81102475 77204973 81376956 NC_060937.1 CM021580.2 99.75 True indel: indel (> 5bp) 81102771 81779482 81377245 82054441 NC_060937.1 CM021580.2 99.75 True indel: indel (> 5bp) 81779871 81785403 82054877 82060409 NC_060937.1 CM021580.2 99.75 True indel: indel (<= 5bp) 81785405 81787470 82060410 82062475 NC_060937.1 CM021580.2 99.95 True indel: indel (<= 5bp) 81787471 81793979 82062477 82068985 NC_060937.1 CM021580.2 99.97 True indel: indel (<= 5bp) 81793980 81794772 82068987 82069779 NC_060937.1 CM021580.2 100.0 True indel: indel (<= 5bp) 81794773 81795725 82069781 82070733 NC_060937.1 CM021580.2 99.9 True indel: indel (> 5bp) 81795732 81797378 82070734 82072380 NC_060937.1 CM021580.2 99.88 True indel: indel (<= 5bp) 81797380 81802496 82072381 82077497 NC_060937.1 CM021580.2 99.96 True indel: indel (<= 5bp) 81802497 81803958 82077499 82078960 NC_060937.1 CM021580.2 99.86 True indel: indel (<= 5bp) 81803959 81824601 82078962 82099604 NC_060937.1 CM021580.2 99.88 True local misassembly 81830873 81835578 82099605 82104310 NC_060937.1 CM021580.2 99.89 True indel: stretch of mismatches 81836010 81836925 82104742 82105657 NC_060937.1 CM021580.2 99.78 True local misassembly 81837688 82079730 82106316 82348311 NC_060937.1 CM021580.2 99.78 True indel: indel (> 5bp) 82079946 83950859 82348560 84218256 NC_060937.1 CM021580.2 99.82 True local misassembly 83952138 84976786 84219620 85244739 NC_060937.1 CM021580.2 99.69 True indel: indel (> 5bp) 84976888 84999278 85244780 85267162 NC_060937.1 CM021580.2 98.86 True indel: indel (> 5bp) 84999396 85363389 85267222 85630158 NC_060937.1 CM021580.2 99.24 True local misassembly 85363568 85982175 85630159 86249289 NC_060937.1 CM021580.2 99.52 True local misassembly 85983014 86831539 86249949 87098518 NC_060937.1 CM021580.2 99.85 True local misassembly 86832009 97814164 87099170 98088066 NC_060937.1 CM021580.2 99.66 True local misassembly 97815671 99270416 98089731 99550385 NC_060937.1 CM021580.2 99.33 True local misassembly 99272443 99666720 99552164 99946448 NC_060937.1 CM021580.2 99.94 True indel: indel (> 5bp) 99666826 101973935 99946503 102252573 NC_060937.1 CM021580.2 99.75 True indel: indel (> 5bp) 101974001 108922452 102252659 109200438 NC_060937.1 CM021580.2 99.79 True local misassembly 108923313 109480957 109201124 109757737 NC_060937.1 CM021580.2 99.53 True indel: indel (> 5bp) 109481175 109484389 109757924 109761096 NC_060937.1 CM021580.2 96.58 True indel: indel (> 5bp) 109484665 109705159 109761301 109980322 NC_060937.1 CM021580.2 98.96 True local misassembly 109705237 109711514 109980550 109986855 NC_060937.1 CM021580.2 97.56 True local misassembly 109712369 109892696 109987676 110168444 NC_060937.1 CM021580.2 99.39 True indel: indel (<= 5bp) 109892763 111258603 110168509 111535237 NC_060937.1 CM021580.2 99.44 True local misassembly 111258728 111529374 111535542 111806576 NC_060937.1 CM021580.2 99.09 True local misassembly 111530165 111531162 111809610 111810607 NC_060937.1 CM021580.2 98.1 True local misassembly 111531163 111531920 111811016 111811773 NC_060937.1 CM021580.2 98.81 True local misassembly 111534506 111535344 111815957 111816795 NC_060937.1 CM021580.2 99.52 True local misassembly 111535549 111536953 111816796 111818200 NC_060937.1 CM021580.2 99.64 True local misassembly 111536954 111538462 111818643 111820151 NC_060937.1 CM021580.2 99.6 True local misassembly 111538565 111539227 111820152 111820814 NC_060937.1 CM021580.2 99.55 True local misassembly 111541716 111542722 111821808 111822814 NC_060937.1 CM021580.2 99.3 True local misassembly 111542723 111545525 111822917 111825719 NC_060937.1 CM021580.2 99.5 True local misassembly 111547423 111548057 111829079 111829713 NC_060937.1 CM021580.2 98.9 True local misassembly 111549210 112053231 111832056 112335936 NC_060937.1 CM021580.2 98.97 True indel: indel (> 5bp) 112053260 112599717 112335978 112883228 NC_060937.1 CM021580.2 99.18 True local misassembly 112601546 112801940 112883841 113082210 NC_060937.1 CM021580.2 98.14 True local misassembly 112802070 112824295 113082449 113104530 NC_060937.1 CM021580.2 97.46 True local misassembly 112824835 113011596 113105074 113293107 NC_060937.1 CM021580.2 98.6 True local misassembly 113011713 113015545 113294304 113298043 NC_060937.1 CM021580.2 96.14 True indel: indel (> 5bp) 113015538 113019124 113298076 113301602 NC_060937.1 CM021580.2 96.48 True local misassembly 113019885 113020833 113302513 113303461 NC_060937.1 CM021580.2 98.84 True local misassembly 113020880 113024058 113304620 113307798 NC_060937.1 CM021580.2 99.31 True local misassembly 113024414 113025839 113308383 113309808 NC_060937.1 CM021580.2 99.02 True local misassembly 113026220 113032996 113310333 113317109 NC_060937.1 CM021580.2 99.81 True local misassembly 113033908 113034490 113320093 113320675 NC_060937.1 CM021580.2 99.66 True indel: indel (<= 5bp) 113034492 113035212 113320676 113321396 NC_060937.1 CM021580.2 99.17 True indel: indel (> 5bp) 113035410 113039210 113321516 113325316 NC_060937.1 CM021580.2 99.89 True indel: indel (> 5bp) 113039286 113040265 113325317 113326296 NC_060937.1 CM021580.2 100.0 True local misassembly 113040380 113044250 113326297 113330167 NC_060937.1 CM021580.2 99.92 True indel: indel (<= 5bp) 113044251 113044775 113330170 113330694 NC_060937.1 CM021580.2 99.81 True local misassembly 113045498 113048108 113331310 113333920 NC_060937.1 CM021580.2 99.81 True indel: indel (> 5bp) 113048183 113050247 113333921 113335985 NC_060937.1 CM021580.2 99.66 True local misassembly 113052318 113086580 113336517 113370712 NC_060937.1 CM021580.2 99.37 True indel: indel (> 5bp) 113086667 113216540 113370714 113502770 NC_060937.1 CM021580.2 95.88 True indel: indel (> 5bp) 113216627 113235501 113502819 113522020 NC_060937.1 CM021580.2 95.18 True local misassembly 113235705 113236447 113522416 113523158 NC_060937.1 CM021580.2 100.0 True local misassembly 113236503 113237097 113523304 113523898 NC_060937.1 CM021580.2 99.16 True indel: indel (<= 5bp) 113237529 113239428 113524328 113526227 NC_060937.1 CM021580.2 99.84 True local misassembly 113239643 113249893 113526352 113536602 NC_060937.1 CM021580.2 99.94 True local misassembly 113251878 113260211 113540251 113548584 NC_060937.1 CM021580.2 99.95 True local misassembly 113260074 113306025 113548585 113594319 NC_060937.1 CM021580.2 97.03 True local misassembly 113307184 113311042 113594807 113598707 NC_060937.1 CM021580.2 98.39 True indel: stretch of mismatches 113311330 113363755 113598995 113650455 NC_060937.1 CM021580.2 95.7 True local misassembly 113364311 113563599 113650642 113850857 NC_060937.1 CM021580.2 99.11 True CONTIG CM021580.2 113854012 misassembled 1 12073 1 12072 NC_060938.1 CM021581.2 99.36 True local misassembly 5794 265138 12073 271523 NC_060938.1 CM021581.2 99.51 True relocation, inconsistency = 83005 348394 355101 271774 278480 NC_060938.1 CM021581.2 97.56 True relocation, inconsistency = -20032 335070 337801 278481 281148 NC_060938.1 CM021581.2 96.18 True relocation, inconsistency = -71741 266061 277169 281149 292576 NC_060938.1 CM021581.2 95.2 True relocation, inconsistency = 25470 302640 307055 292577 296992 NC_060938.1 CM021581.2 98.05 True relocation, inconsistency = -17151 290082 343737 297170 350124 NC_060938.1 CM021581.2 97.38 True fake: not a misassembly (possible transposable element) 360696 365553 350125 354982 NC_060938.1 CM021581.2 98.0 True fake: not a misassembly (possible transposable element) 349804 361175 356191 367436 NC_060938.1 CM021581.2 97.79 True fake: not a misassembly (possible transposable element) 372274 376070 369384 373117 NC_060938.1 CM021581.2 96.35 True fake: not a misassembly (possible transposable element) 366857 417515 373118 423715 NC_060938.1 CM021581.2 99.29 True relocation, inconsistency = 29435 449123 456136 425888 432900 NC_060938.1 CM021581.2 99.13 True relocation, inconsistency = 7169 463306 467249 432901 436845 NC_060938.1 CM021581.2 98.17 True relocation, inconsistency = 100917 568167 575953 436846 444697 NC_060938.1 CM021581.2 95.62 True relocation, inconsistency = -181291 394663 395790 444698 445825 NC_060938.1 CM021581.2 97.73 True relocation, inconsistency = 14398 410189 419414 445826 454987 NC_060938.1 CM021581.2 98.53 True indel: stretch of mismatches 419415 426701 454988 462274 NC_060938.1 CM021581.2 99.27 True relocation, inconsistency = 29436 461356 490908 467493 496984 NC_060938.1 CM021581.2 96.85 True relocation, inconsistency = 96763 587672 591385 496985 500698 NC_060938.1 CM021581.2 96.92 True local misassembly 591386 595223 500827 504664 NC_060938.1 CM021581.2 97.29 True relocation, inconsistency = -76987 518237 520728 504665 507156 NC_060938.1 CM021581.2 98.11 True local misassembly 519385 521687 507157 509460 NC_060938.1 CM021581.2 96.19 True relocation, inconsistency = -18238 503450 523820 509461 529577 NC_060938.1 CM021581.2 97.27 True relocation, inconsistency = 84796 608617 615127 529578 535896 NC_060938.1 CM021581.2 95.21 True relocation, inconsistency = -24256 591912 600408 536937 545432 NC_060938.1 CM021581.2 97.19 True relocation, inconsistency = -79356 534764 535675 559144 560055 NC_060938.1 CM021581.2 97.84 True relocation, inconsistency = 18365 554041 634274 560056 640159 NC_060938.1 CM021581.2 95.99 True translocation 349960 382644 640160 672313 NC_060946.1 CM021581.2 97.47 True translocation 645491 741631 672314 768382 NC_060938.1 CM021581.2 98.88 True fake: not a misassembly (possible transposable element) 333115 338542 768383 774172 NC_060939.1 CM021581.2 98.23 True fake: not a misassembly (possible transposable element) 748727 751455 775328 778056 NC_060938.1 CM021581.2 100.0 True indel: indel (> 5bp) 751561 764494 778152 791083 NC_060938.1 CM021581.2 97.77 True local misassembly 769170 770112 795757 796699 NC_060938.1 CM021581.2 96.29 True indel: indel (<= 5bp) 770114 770918 796700 797504 NC_060938.1 CM021581.2 97.52 True indel: indel (> 5bp) 770986 772085 797505 798604 NC_060938.1 CM021581.2 95.82 True local misassembly 772992 804105 799444 830356 NC_060938.1 CM021581.2 98.47 True indel: indel (<= 5bp) 804249 808191 830499 834442 NC_060938.1 CM021581.2 99.59 True indel: indel (<= 5bp) 808335 810863 834585 837114 NC_060938.1 CM021581.2 99.68 True local misassembly 811400 820827 837652 847078 NC_060938.1 CM021581.2 97.97 True indel: indel (> 5bp) 821138 869968 847324 896156 NC_060938.1 CM021581.2 99.75 True indel: stretch of mismatches 870282 982801 896470 1009288 NC_060938.1 CM021581.2 98.84 True local misassembly 984937 985797 1011257 1012112 NC_060938.1 CM021581.2 97.33 True fake: not a misassembly (possible transposable element) 971039 971639 1013042 1013642 NC_060938.1 CM021581.2 96.84 True fake: not a misassembly (possible transposable element) 991053 991704 1016828 1017479 NC_060938.1 CM021581.2 99.23 True indel: indel (> 5bp) 991776 992279 1017536 1018039 NC_060938.1 CM021581.2 99.6 True local misassembly 993013 993751 1018738 1019476 NC_060938.1 CM021581.2 99.46 True local misassembly 994838 996948 1020548 1022658 NC_060938.1 CM021581.2 99.43 True indel: indel (<= 5bp) 996949 997690 1022664 1023405 NC_060938.1 CM021581.2 96.9 True indel: indel (<= 5bp) 998033 998584 1023743 1024294 NC_060938.1 CM021581.2 99.46 True local misassembly 999261 1000325 1024976 1026040 NC_060938.1 CM021581.2 99.34 True local misassembly 1001498 1002424 1027138 1028064 NC_060938.1 CM021581.2 99.46 True local misassembly 1003018 1003596 1028615 1029193 NC_060938.1 CM021581.2 98.96 True indel: indel (> 5bp) 1003617 1004337 1029194 1029914 NC_060938.1 CM021581.2 99.72 True fake: not a misassembly (possible transposable element) 977068 978522 1032262 1033696 NC_060938.1 CM021581.2 96.23 True fake: not a misassembly (possible transposable element) 1008921 1014218 1034340 1039658 NC_060938.1 CM021581.2 97.25 True fake: not a misassembly (possible transposable element) 967886 973299 1052575 1057998 NC_060938.1 CM021581.2 98.08 True fake: not a misassembly (possible transposable element) 1037613 1053459 1062498 1078140 NC_060938.1 CM021581.2 96.04 True local misassembly 1056406 1062316 1081111 1086971 NC_060938.1 CM021581.2 96.24 True local misassembly 1068291 1068973 1092667 1093349 NC_060938.1 CM021581.2 96.63 True local misassembly 1069369 1078551 1093860 1102977 NC_060938.1 CM021581.2 96.78 True indel: indel (> 5bp) 1079039 1105857 1103426 1129752 NC_060938.1 CM021581.2 96.66 True local misassembly 1109539 1125097 1133201 1148634 NC_060938.1 CM021581.2 95.91 True indel: indel (> 5bp) 1125490 1126658 1148961 1150129 NC_060938.1 CM021581.2 97.29 True local misassembly 1128958 1136647 1152309 1159979 NC_060938.1 CM021581.2 95.1 True local misassembly 1141971 1148248 1165020 1171224 NC_060938.1 CM021581.2 95.5 True indel: indel (<= 5bp) 1148333 1148981 1171314 1171962 NC_060938.1 CM021581.2 97.84 True local misassembly 1149693 1153844 1172570 1176726 NC_060938.1 CM021581.2 97.31 True local misassembly 1154430 1162514 1177231 1185324 NC_060938.1 CM021581.2 96.9 True fake: not a misassembly (possible transposable element) 977418 978478 1185325 1186365 NC_060938.1 CM021581.2 97.29 True fake: not a misassembly (possible transposable element) 1164950 1165773 1187857 1188680 NC_060938.1 CM021581.2 99.76 True fake: not a misassembly (possible transposable element) 1208386 1209645 1188681 1189940 NC_060938.1 CM021581.2 95.37 True fake: not a misassembly (possible transposable element) 1167343 1168054 1190064 1190775 NC_060938.1 CM021581.2 95.22 True indel: indel (<= 5bp) 1168408 1168939 1191133 1191664 NC_060938.1 CM021581.2 95.11 True indel: stretch of mismatches 1169047 1169819 1191772 1192544 NC_060938.1 CM021581.2 98.45 True local misassembly 1174610 1175119 1197124 1197633 NC_060938.1 CM021581.2 98.04 True local misassembly 1177827 1178458 1200245 1200876 NC_060938.1 CM021581.2 99.53 True local misassembly 1178986 1179575 1201444 1202033 NC_060938.1 CM021581.2 98.98 True local misassembly 1180392 1180904 1202835 1203347 NC_060938.1 CM021581.2 99.03 True indel: indel (<= 5bp) 1181182 1181724 1203620 1204162 NC_060938.1 CM021581.2 99.63 True local misassembly 1185007 1189146 1207362 1211501 NC_060938.1 CM021581.2 99.61 True indel: stretch of mismatches 1189369 1197431 1211724 1219776 NC_060938.1 CM021581.2 99.58 True indel: stretch of mismatches 1197737 1216316 1220082 1238691 NC_060938.1 CM021581.2 99.39 True fake: not a misassembly (possible transposable element) 1225784 1227198 1240401 1241815 NC_060938.1 CM021581.2 97.85 True fake: not a misassembly (possible transposable element) 1219613 1231787 1241816 1254140 NC_060938.1 CM021581.2 97.13 True local misassembly 1232961 1234130 1255233 1256393 NC_060938.1 CM021581.2 95.09 True local misassembly 1234907 1235417 1257080 1257590 NC_060938.1 CM021581.2 98.63 True indel: indel (> 5bp) 1235763 1236550 1257926 1258713 NC_060938.1 CM021581.2 99.11 True local misassembly 1237640 1238353 1259818 1260531 NC_060938.1 CM021581.2 98.74 True local misassembly 1239083 1240428 1261256 1262601 NC_060938.1 CM021581.2 99.33 True local misassembly 1242023 1242723 1263793 1264493 NC_060938.1 CM021581.2 99.14 True indel: indel (> 5bp) 1242792 1243572 1264587 1265367 NC_060938.1 CM021581.2 99.36 True local misassembly 1244557 1245114 1266312 1266869 NC_060938.1 CM021581.2 99.46 True indel: stretch of mismatches 1245172 1245744 1266927 1267499 NC_060938.1 CM021581.2 99.83 True local misassembly 1249315 1250339 1270608 1271632 NC_060938.1 CM021581.2 99.22 True local misassembly 1257983 1258715 1277384 1278116 NC_060938.1 CM021581.2 95.83 True local misassembly 1256456 1270117 1278117 1291781 NC_060938.1 CM021581.2 98.65 True indel: stretch of mismatches 1270118 1282631 1291782 1304123 NC_060938.1 CM021581.2 96.0 True local misassembly 1284144 1285158 1304124 1305138 NC_060938.1 CM021581.2 97.19 True local misassembly 1285626 1286945 1305815 1307134 NC_060938.1 CM021581.2 96.21 True local misassembly 1287526 1289148 1308764 1310389 NC_060938.1 CM021581.2 96.74 True local misassembly 1290758 1293244 1312124 1314610 NC_060938.1 CM021581.2 96.74 True local misassembly 1294001 1294984 1314611 1315592 NC_060938.1 CM021581.2 96.95 True translocation 2972718 2975476 1316490 1319259 NC_060946.1 CM021581.2 96.64 True translocation 2430115 2431115 1319260 1320265 NC_060937.1 CM021581.2 96.32 True fake: not a misassembly (possible transposable element) 3186061 3188088 1322252 1324275 NC_060937.1 CM021581.2 95.76 True fake: not a misassembly (possible transposable element) 2439313 2442462 1326379 1329532 NC_060937.1 CM021581.2 95.59 True relocation, inconsistency = 2059358 4502884 4504568 1330596 1332279 NC_060937.1 CM021581.2 96.02 True translocation 1311007 1664363 1332365 1685972 NC_060938.1 CM021581.2 99.5 True translocation 95755113 95789584 1685973 1719862 NC_060927.1 CM021581.2 98.62 True translocation 2372002 2377203 1719863 1725068 NC_060945.1 CM021581.2 98.24 True translocation 5358332 5533693 1725069 1902820 NC_060937.1 CM021581.2 98.0 True translocation 1865489 2737301 1902836 2774321 NC_060938.1 CM021581.2 99.63 True indel: indel (> 5bp) 2737602 2781439 2774575 2818208 NC_060938.1 CM021581.2 98.88 True translocation 4085236 4086562 2818351 2819637 NC_060939.1 CM021581.2 95.55 True indel: indel (> 5bp) 4086708 4131015 2819760 2864090 NC_060939.1 CM021581.2 98.68 True translocation 2781769 3307021 2864091 3389377 NC_060938.1 CM021581.2 99.75 True translocation 9850612 9852046 3389378 3390827 NC_060937.1 CM021581.2 97.29 True translocation 3333604 3446785 3392216 3505787 NC_060938.1 CM021581.2 99.12 True indel: indel (> 5bp) 3446955 3620273 3505987 3680325 NC_060938.1 CM021581.2 97.68 True local misassembly 3654200 3658764 3714217 3718790 NC_060938.1 CM021581.2 98.93 True local misassembly 3660477 3661187 3720515 3721225 NC_060938.1 CM021581.2 96.34 True local misassembly 3667689 3668279 3727687 3728277 NC_060938.1 CM021581.2 97.29 True local misassembly 3670178 3676445 3730134 3736403 NC_060938.1 CM021581.2 99.67 True indel: indel (<= 5bp) 3676728 3679640 3736688 3739546 NC_060938.1 CM021581.2 96.84 True local misassembly 3680309 3684119 3740213 3744054 NC_060938.1 CM021581.2 95.77 True indel: indel (<= 5bp) 3684483 3741508 3744421 3801416 NC_060938.1 CM021581.2 99.38 True local misassembly 3742429 3743153 3802238 3802957 NC_060938.1 CM021581.2 97.38 True indel: indel (> 5bp) 3743414 3790033 3803204 3849789 NC_060938.1 CM021581.2 99.3 True local misassembly 3792204 3808215 3851866 3867797 NC_060938.1 CM021581.2 99.15 True local misassembly 3812480 3822465 3871912 3881872 NC_060938.1 CM021581.2 99.29 True local misassembly 3824106 3880710 3883342 3939873 NC_060938.1 CM021581.2 99.32 True local misassembly 3883630 4752638 3942671 4811439 NC_060938.1 CM021581.2 99.74 True indel: indel (> 5bp) 4752802 4758632 4811593 4817418 NC_060938.1 CM021581.2 99.54 True local misassembly 4760071 4769928 4818757 4828614 NC_060938.1 CM021581.2 99.89 True indel: indel (> 5bp) 4770092 4776822 4828768 4835507 NC_060938.1 CM021581.2 98.9 True local misassembly 4777598 4869975 4836293 4928455 NC_060938.1 CM021581.2 99.2 True indel: indel (> 5bp) 4870459 5699735 4928954 5757907 NC_060938.1 CM021581.2 99.62 True relocation, inconsistency = -11798 5700307 5846840 5904442 5757908 NC_060938.1 CM021581.2 99.15 True inversion 5846466 6966562 5904443 7024917 NC_060938.1 CM021581.2 99.82 True local misassembly 6971868 6981341 7030204 7039678 NC_060938.1 CM021581.2 97.25 True indel: stretch of mismatches 6981408 7371212 7039745 7429492 NC_060938.1 CM021581.2 99.47 True local misassembly 7371136 7452039 7430085 7510968 NC_060938.1 CM021581.2 97.79 True relocation, inconsistency = 10913 7462998 7464518 7511014 7512534 NC_060938.1 CM021581.2 99.21 True indel: indel (<= 5bp) 7464520 7465789 7512535 7513804 NC_060938.1 CM021581.2 98.11 True indel: indel (<= 5bp) 7465791 7466428 7513805 7514442 NC_060938.1 CM021581.2 98.43 True local misassembly 7466600 7468276 7514443 7516119 NC_060938.1 CM021581.2 99.05 True fake: not a misassembly (possible transposable element) 7477278 7480722 7516406 7519849 NC_060938.1 CM021581.2 98.37 True fake: not a misassembly (possible transposable element) 7472345 7474026 7519850 7521531 NC_060938.1 CM021581.2 98.3 True relocation, inconsistency = -12985 7461452 7462659 7521942 7523149 NC_060938.1 CM021581.2 98.59 True local misassembly 7462831 7466428 7523150 7526747 NC_060938.1 CM021581.2 98.67 True local misassembly 7466600 7470186 7526748 7530334 NC_060938.1 CM021581.2 98.91 True local misassembly 7470358 7475373 7530335 7535350 NC_060938.1 CM021581.2 98.66 True local misassembly 7475386 7477277 7535704 7537595 NC_060938.1 CM021581.2 98.9 True local misassembly 7472322 7475566 7537596 7540670 NC_060938.1 CM021581.2 96.16 True local misassembly 7477278 7492088 7540671 7555656 NC_060938.1 CM021581.2 97.61 True local misassembly 7495164 7505142 7555657 7565636 NC_060938.1 CM021581.2 96.18 True fake: not a misassembly (possible transposable element) 7477301 7478988 7565637 7567324 NC_060938.1 CM021581.2 98.73 True fake: not a misassembly (possible transposable element) 7506484 7516940 7567325 7577780 NC_060938.1 CM021581.2 96.11 True relocation, inconsistency = -11100 7505841 7573505 7577781 7646293 NC_060938.1 CM021581.2 96.89 True translocation 8533158 8852481 7965334 7646294 NC_060945.1 CM021581.2 99.33 True translocation 7882092 7888837 7965335 7972080 NC_060938.1 CM021581.2 99.84 True local misassembly 7882903 7922609 7972081 8011791 NC_060938.1 CM021581.2 99.32 True translocation 8303108 8490099 8198532 8011792 NC_060945.1 CM021581.2 98.57 True translocation 8095309 8183671 8198533 8286515 NC_060938.1 CM021581.2 97.83 True translocation 8195181 8197461 8288916 8286636 NC_060945.1 CM021581.2 98.25 True indel: indel (<= 5bp) 8194479 8195179 8289617 8288917 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8290376 8289618 NC_060945.1 CM021581.2 98.68 True indel: indel (<= 5bp) 8195181 8197461 8292657 8290377 NC_060945.1 CM021581.2 98.2 True indel: indel (<= 5bp) 8194479 8195179 8293358 8292658 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8294117 8293359 NC_060945.1 CM021581.2 98.55 True indel: indel (<= 5bp) 8195181 8197461 8296398 8294118 NC_060945.1 CM021581.2 98.2 True indel: indel (<= 5bp) 8194479 8195179 8297099 8296399 NC_060945.1 CM021581.2 98.61 True local misassembly 8197463 8198221 8297858 8297100 NC_060945.1 CM021581.2 98.42 True indel: indel (<= 5bp) 8195181 8197461 8300139 8297859 NC_060945.1 CM021581.2 98.2 True indel: indel (<= 5bp) 8194479 8195179 8300840 8300140 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8301599 8300841 NC_060945.1 CM021581.2 98.42 True indel: indel (<= 5bp) 8195181 8197461 8303880 8301600 NC_060945.1 CM021581.2 98.25 True indel: indel (<= 5bp) 8194479 8195179 8304581 8303881 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8305340 8304582 NC_060945.1 CM021581.2 98.42 True indel: indel (<= 5bp) 8195181 8197461 8307621 8305341 NC_060945.1 CM021581.2 98.29 True indel: indel (<= 5bp) 8194479 8195179 8308322 8307622 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8309081 8308323 NC_060945.1 CM021581.2 98.55 True indel: indel (<= 5bp) 8195181 8197461 8311362 8309082 NC_060945.1 CM021581.2 98.25 True indel: indel (<= 5bp) 8194479 8195179 8312063 8311363 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8312822 8312064 NC_060945.1 CM021581.2 98.68 True indel: indel (<= 5bp) 8195181 8197461 8315103 8312823 NC_060945.1 CM021581.2 98.2 True indel: indel (<= 5bp) 8194479 8195179 8315804 8315104 NC_060945.1 CM021581.2 98.89 True local misassembly 8197463 8198221 8316563 8315805 NC_060945.1 CM021581.2 98.55 True indel: indel (<= 5bp) 8195181 8197461 8318844 8316564 NC_060945.1 CM021581.2 98.11 True translocation 8183638 8285274 8319130 8420975 NC_060938.1 CM021581.2 97.77 True translocation 8123774 8126850 8424027 8420976 NC_060945.1 CM021581.2 98.34 True translocation 8285280 8775811 8424028 8915473 NC_060938.1 CM021581.2 99.45 True local misassembly 8774832 8819813 8915474 8960505 NC_060938.1 CM021581.2 99.14 True indel: indel (> 5bp) 8819959 8826243 8960636 8966920 NC_060938.1 CM021581.2 99.87 True indel: indel (> 5bp) 8826259 8827425 8966921 8968087 NC_060938.1 CM021581.2 100.0 True indel: indel (> 5bp) 8827426 8828796 8968103 8969473 NC_060938.1 CM021581.2 99.85 True indel: indel (<= 5bp) 8828797 8835513 8969475 8976191 NC_060938.1 CM021581.2 99.9 True indel: indel (> 5bp) 8835529 8838789 8976192 8979452 NC_060938.1 CM021581.2 99.72 True relocation, inconsistency = 11832 8850957 8853991 8979788 8982822 NC_060938.1 CM021581.2 99.87 True indel: indel (> 5bp) 8854007 8854961 8982823 8983777 NC_060938.1 CM021581.2 99.79 True indel: indel (<= 5bp) 8854962 8858796 8983783 8987617 NC_060938.1 CM021581.2 99.84 True indel: indel (> 5bp) 8858951 8861076 8987802 8989927 NC_060938.1 CM021581.2 99.76 True indel: indel (<= 5bp) 8861082 8862786 8989928 8991632 NC_060938.1 CM021581.2 99.77 True indel: indel (> 5bp) 8862802 8863494 8991633 8992325 NC_060938.1 CM021581.2 99.71 True local misassembly 8864171 8865141 8992972 8993942 NC_060938.1 CM021581.2 99.59 True indel: indel (> 5bp) 8865142 8865666 8994003 8994527 NC_060938.1 CM021581.2 99.81 True local misassembly 8866476 8868892 8995352 8997768 NC_060938.1 CM021581.2 99.83 True indel: indel (<= 5bp) 8868893 8870845 8997774 8999726 NC_060938.1 CM021581.2 99.9 True indel: indel (<= 5bp) 8870846 8872500 8999732 9001386 NC_060938.1 CM021581.2 99.88 True indel: indel (> 5bp) 8872511 8873144 9001387 9002020 NC_060938.1 CM021581.2 99.84 True indel: stretch of mismatches 8873223 8874074 9002099 9002950 NC_060938.1 CM021581.2 99.88 True indel: indel (<= 5bp) 8874080 8875568 9002951 9004439 NC_060938.1 CM021581.2 99.93 True indel: indel (<= 5bp) 8875574 8876749 9004440 9005615 NC_060938.1 CM021581.2 99.74 True indel: indel (> 5bp) 8877215 8878000 9006106 9006891 NC_060938.1 CM021581.2 99.75 True local misassembly 8878592 8879382 9007488 9008278 NC_060938.1 CM021581.2 99.87 True indel: indel (> 5bp) 8879383 8880685 9008294 9009596 NC_060938.1 CM021581.2 99.69 True indel: indel (<= 5bp) 8880686 8896332 9009598 9025244 NC_060938.1 CM021581.2 99.89 True indel: indel (<= 5bp) 8896334 8908335 9025245 9037246 NC_060938.1 CM021581.2 99.92 True indel: indel (<= 5bp) 8908336 8916312 9037248 9045224 NC_060938.1 CM021581.2 99.9 True indel: indel (<= 5bp) 8916314 8922131 9045225 9051042 NC_060938.1 CM021581.2 99.83 True indel: indel (> 5bp) 8922132 8927552 9051122 9056542 NC_060938.1 CM021581.2 99.78 True indel: indel (<= 5bp) 8927554 8945424 9056543 9074413 NC_060938.1 CM021581.2 99.91 True indel: indel (<= 5bp) 8945425 8955564 9074416 9084555 NC_060938.1 CM021581.2 99.85 True indel: indel (> 5bp) 8955573 8957998 9084556 9086981 NC_060938.1 CM021581.2 99.79 True indel: indel (<= 5bp) 8958000 8965499 9086982 9094481 NC_060938.1 CM021581.2 99.77 True indel: stretch of mismatches 8965500 9198135 9094482 9327441 NC_060938.1 CM021581.2 98.7 True indel: indel (> 5bp) 9198364 9247705 9327620 9377019 NC_060938.1 CM021581.2 99.41 True indel: stretch of mismatches 9247920 9607883 9377234 9737532 NC_060938.1 CM021581.2 99.63 True indel: indel (<= 5bp) 9607989 9731257 9737639 9861296 NC_060938.1 CM021581.2 99.33 True translocation 12419244 12788632 9861297 10230501 NC_060946.1 CM021581.2 99.49 True translocation 10090857 10094351 10230502 10233996 NC_060938.1 CM021581.2 99.78 True relocation, inconsistency = 16870 10111222 10118582 10233997 10241357 NC_060938.1 CM021581.2 98.42 True translocation 12908184 12909182 10241358 10242356 NC_060946.1 CM021581.2 96.5 True translocation 10102712 10138896 10242357 10278549 NC_060938.1 CM021581.2 98.97 True local misassembly 10144460 10161059 10284117 10300714 NC_060938.1 CM021581.2 99.36 True relocation, inconsistency = -14989 10146071 10151500 10300715 10306153 NC_060938.1 CM021581.2 97.99 True relocation, inconsistency = -25888 10125613 10127858 10306154 10308403 NC_060938.1 CM021581.2 96.83 True relocation, inconsistency = -14649 10114104 10126299 10309298 10321450 NC_060938.1 CM021581.2 96.55 True relocation, inconsistency = 47363 10174749 10176420 10322537 10324208 NC_060938.1 CM021581.2 98.22 True relocation, inconsistency = 8184 10184605 10203388 10324209 10342986 NC_060938.1 CM021581.2 99.39 True relocation, inconsistency = 19096 10222485 10225212 10342987 10345714 NC_060938.1 CM021581.2 99.25 True relocation, inconsistency = 325749 10551201 10555479 10345954 10350232 NC_060938.1 CM021581.2 99.16 True relocation, inconsistency = -344845 10210635 10225212 10350233 10364810 NC_060938.1 CM021581.2 99.58 True fake: not a misassembly (possible transposable element) 10576870 10581200 10364811 10369141 NC_060938.1 CM021581.2 99.15 True fake: not a misassembly (possible transposable element) 10230908 10236555 10369142 10374788 NC_060938.1 CM021581.2 98.6 True local misassembly 10235192 10250186 10374789 10389781 NC_060938.1 CM021581.2 99.73 True indel: stretch of mismatches 10250187 10283517 10389782 10423120 NC_060938.1 CM021581.2 99.37 True translocation 12954674 12956759 10430649 10432734 NC_060946.1 CM021581.2 97.02 True translocation 10293129 10347331 10432735 10486937 NC_060938.1 CM021581.2 99.73 True translocation 15464506 15466158 10486938 10488590 NC_060946.1 CM021581.2 97.97 True translocation 10280277 10281322 10494857 10495902 NC_060938.1 CM021581.2 97.13 True indel: indel (<= 5bp) 10281367 10282022 10495949 10496604 NC_060938.1 CM021581.2 96.19 True indel: indel (<= 5bp) 10282023 10283663 10496607 10498247 NC_060938.1 CM021581.2 96.74 True relocation, inconsistency = 74972 10358636 10365593 10498248 10505204 NC_060938.1 CM021581.2 98.18 True local misassembly 10363624 10385923 10505958 10528259 NC_060938.1 CM021581.2 99.28 True fake: not a misassembly (possible transposable element) 10445938 10450558 10528260 10532880 NC_060938.1 CM021581.2 99.35 True fake: not a misassembly (possible transposable element) 10393273 10405019 10532881 10544626 NC_060938.1 CM021581.2 99.62 True relocation, inconsistency = -151171 10253849 10259729 10544627 10550507 NC_060938.1 CM021581.2 99.27 True relocation, inconsistency = -9544 10250186 10257384 10550508 10557708 NC_060938.1 CM021581.2 99.11 True local misassembly 10251929 10262458 10557709 10568238 NC_060938.1 CM021581.2 99.06 True relocation, inconsistency = 166175 10428634 10440256 10568239 10579860 NC_060938.1 CM021581.2 99.57 True relocation, inconsistency = 595754 11036011 11036934 10579861 10580784 NC_060938.1 CM021581.2 98.5 True local misassembly 11035571 11040762 10580785 10585975 NC_060938.1 CM021581.2 98.71 True relocation, inconsistency = -594390 10446373 10467761 10585976 10607363 NC_060938.1 CM021581.2 99.71 True relocation, inconsistency = 1987793 12455555 12458708 10607364 10610517 NC_060938.1 CM021581.2 98.95 True relocation, inconsistency = -2077815 10380894 10388651 10610518 10618275 NC_060938.1 CM021581.2 99.29 True relocation, inconsistency = -21824 10366828 10369990 10618276 10621438 NC_060938.1 CM021581.2 99.05 True relocation, inconsistency = 344996 10714987 10720246 10621439 10626698 NC_060938.1 CM021581.2 99.07 True relocation, inconsistency = -233150 10487097 10557793 10626699 10697395 NC_060938.1 CM021581.2 99.95 True relocation, inconsistency = 1106828 11664622 11668675 10697396 10701452 NC_060938.1 CM021581.2 98.95 True relocation, inconsistency = 715963 12385088 12391457 10701902 10708272 NC_060938.1 CM021581.2 99.36 True local misassembly 12387367 12390542 10708273 10711449 NC_060938.1 CM021581.2 99.23 True relocation, inconsistency = -1818699 10571844 10591865 10711450 10731479 NC_060938.1 CM021581.2 99.48 True indel: stretch of mismatches 10591866 10610947 10731480 10750565 NC_060938.1 CM021581.2 99.58 True relocation, inconsistency = -133638 10477310 10484129 10750566 10757385 NC_060938.1 CM021581.2 99.08 True relocation, inconsistency = 565744 11049874 11051663 10757386 10759175 NC_060938.1 CM021581.2 98.51 True relocation, inconsistency = -432106 10619558 10705695 10759176 10845321 NC_060938.1 CM021581.2 99.89 True relocation, inconsistency = 10912 10716724 10725440 10845438 10854154 NC_060938.1 CM021581.2 99.09 True relocation, inconsistency = -242698 10482743 10484937 10854155 10856349 NC_060938.1 CM021581.2 99.04 True relocation, inconsistency = 1985065 12470003 12477174 10856350 10863521 NC_060938.1 CM021581.2 99.0 True relocation, inconsistency = -1795531 10683214 10686761 10865092 10868643 NC_060938.1 CM021581.2 98.77 True relocation, inconsistency = 1781895 12468657 12477174 10868644 10877161 NC_060938.1 CM021581.2 98.98 True relocation, inconsistency = -47734 12429441 12432697 10877162 10880418 NC_060938.1 CM021581.2 98.69 True relocation, inconsistency = -1554261 10882206 10883304 10884188 10885290 NC_060938.1 CM021581.2 98.74 True relocation, inconsistency = -137640 10745665 10762264 10885291 10901894 NC_060938.1 CM021581.2 99.48 True relocation, inconsistency = -211326 10550939 10553928 10901895 10904884 NC_060938.1 CM021581.2 98.73 True local misassembly 10549837 10557781 10904885 10912829 NC_060938.1 CM021581.2 98.75 True relocation, inconsistency = 163590 10721372 10724652 10912830 10916110 NC_060938.1 CM021581.2 99.09 True relocation, inconsistency = 51820 10776473 10958525 10916111 11098167 NC_060938.1 CM021581.2 99.98 True relocation, inconsistency = -701931 10256595 10263345 11098168 11104917 NC_060938.1 CM021581.2 98.99 True relocation, inconsistency = 140259 10406819 10414532 11108132 11115845 NC_060938.1 CM021581.2 99.14 True relocation, inconsistency = -160719 10258376 10263541 11120408 11125573 NC_060938.1 CM021581.2 98.92 True relocation, inconsistency = -13636 10249906 10255951 11125574 11131623 NC_060938.1 CM021581.2 98.97 True relocation, inconsistency = 2208526 12464478 12477174 11131624 11144317 NC_060938.1 CM021581.2 98.75 True relocation, inconsistency = -32736 12448974 12455842 11148853 11155721 NC_060938.1 CM021581.2 99.05 True relocation, inconsistency = -1825515 10630328 10633284 11155722 11158678 NC_060938.1 CM021581.2 98.99 True relocation, inconsistency = 385736 11027119 11047880 11166777 11187538 NC_060938.1 CM021581.2 99.86 True relocation, inconsistency = -908177 10140759 10147434 11188594 11195276 NC_060938.1 CM021581.2 98.31 True relocation, inconsistency = 498916 10648007 10653200 11196933 11202126 NC_060938.1 CM021581.2 99.17 True translocation 15697639 15700640 11203595 11206596 NC_060946.1 CM021581.2 98.9 True translocation 11068256 11081231 11207921 11220896 NC_060938.1 CM021581.2 99.94 True indel: stretch of mismatches 11081232 11099340 11220897 11239005 NC_060938.1 CM021581.2 99.99 True indel: stretch of mismatches 11099341 11104848 11239006 11244513 NC_060938.1 CM021581.2 99.88 True translocation 15328628 15331165 11244514 11247051 NC_060946.1 CM021581.2 98.08 True relocation, inconsistency = 165826 15497021 15498321 11247081 11248381 NC_060946.1 CM021581.2 98.69 True relocation, inconsistency = -2553175 12945147 12949916 11248382 11253152 NC_060946.1 CM021581.2 97.42 True relocation, inconsistency = 2050008 15000034 15002176 11253262 11255403 NC_060946.1 CM021581.2 96.4 True translocation 11115741 11125134 11255404 11264797 NC_060938.1 CM021581.2 99.52 True relocation, inconsistency = -1015529 10109606 10112406 11264798 11267599 NC_060938.1 CM021581.2 98.5 True local misassembly 10173901 10182924 11325727 11334752 NC_060938.1 CM021581.2 98.35 True relocation, inconsistency = 185263 10375971 10378174 11342536 11344739 NC_060938.1 CM021581.2 99.02 True relocation, inconsistency = -138887 10239288 10247013 11344740 11352465 NC_060938.1 CM021581.2 98.9 True relocation, inconsistency = 771467 11018481 11023936 11352466 11357921 NC_060938.1 CM021581.2 99.42 True relocation, inconsistency = -472998 10551397 10555408 11358380 11362391 NC_060938.1 CM021581.2 98.88 True translocation 15697639 15700575 11362460 11365396 NC_060946.1 CM021581.2 98.54 True translocation 11056642 11059382 11386199 11388939 NC_060938.1 CM021581.2 99.4 True relocation, inconsistency = 189870 11249253 11270646 11388940 11410333 NC_060938.1 CM021581.2 99.95 True indel: stretch of mismatches 11270647 11312055 11410334 11451742 NC_060938.1 CM021581.2 99.92 True translocation 15007906 15008520 11451743 11452358 NC_060946.1 CM021581.2 97.54 True translocation 10718883 10724076 11471734 11476927 NC_060938.1 CM021581.2 99.29 True translocation 15068656 15069588 11481806 11482738 NC_060946.1 CM021581.2 98.2 True translocation 11343053 11360860 11482739 11500546 NC_060938.1 CM021581.2 99.92 True indel: stretch of mismatches 11360861 11363555 11500547 11503241 NC_060938.1 CM021581.2 100.0 True fake: not a misassembly (possible transposable element) 11349918 11353760 11503242 11507084 NC_060938.1 CM021581.2 99.76 True fake: not a misassembly (possible transposable element) 11367399 11375761 11507085 11515447 NC_060938.1 CM021581.2 99.98 True indel: stretch of mismatches 11375762 11412128 11515448 11551814 NC_060938.1 CM021581.2 99.99 True indel: stretch of mismatches 11412129 11437565 11551815 11577252 NC_060938.1 CM021581.2 99.96 True relocation, inconsistency = -1206162 10236560 10241819 11582409 11587668 NC_060938.1 CM021581.2 98.95 True relocation, inconsistency = 258917 10500737 10508477 11587669 11595409 NC_060938.1 CM021581.2 98.71 True local misassembly 10503022 10506384 11595410 11598772 NC_060938.1 CM021581.2 98.84 True relocation, inconsistency = 694588 11200973 11207338 11598773 11605138 NC_060938.1 CM021581.2 99.5 True relocation, inconsistency = -498266 10718883 10723537 11614949 11619603 NC_060938.1 CM021581.2 99.3 True relocation, inconsistency = 756377 11479915 11486361 11619604 11626050 NC_060938.1 CM021581.2 99.75 True relocation, inconsistency = -989525 10496837 10508477 11626051 11637691 NC_060938.1 CM021581.2 98.92 True relocation, inconsistency = 1387719 11896832 11903197 11638327 11644692 NC_060938.1 CM021581.2 99.54 True relocation, inconsistency = -1665732 10237466 10241367 11644693 11648594 NC_060938.1 CM021581.2 99.21 True relocation, inconsistency = -25916 10235192 10240022 11668335 11673165 NC_060938.1 CM021581.2 99.17 True relocation, inconsistency = 1293453 11533476 11539010 11673166 11678700 NC_060938.1 CM021581.2 99.83 True relocation, inconsistency = 670974 12209985 12219313 11678701 11688029 NC_060938.1 CM021581.2 99.85 True relocation, inconsistency = -553676 11665638 11667573 11688030 11689966 NC_060938.1 CM021581.2 99.03 True relocation, inconsistency = 469114 12136688 12143062 11689967 11696343 NC_060938.1 CM021581.2 99.39 True relocation, inconsistency = 207305 12350368 12353296 11696344 11699275 NC_060938.1 CM021581.2 99.56 True relocation, inconsistency = -1584197 10778887 10784076 11709063 11714256 NC_060938.1 CM021581.2 98.86 True relocation, inconsistency = -283602 10500737 10508477 11714519 11722259 NC_060938.1 CM021581.2 98.8 True relocation, inconsistency = -272557 10236364 10243191 11722703 11729530 NC_060938.1 CM021581.2 98.86 True relocation, inconsistency = 1346649 11589841 11601201 11729531 11740892 NC_060938.1 CM021581.2 99.84 True relocation, inconsistency = 726878 12328080 12330088 11740893 11742901 NC_060938.1 CM021581.2 99.34 True relocation, inconsistency = -2209553 10130572 10134175 11752938 11756541 NC_060938.1 CM021581.2 98.72 True relocation, inconsistency = 1482675 11623962 11639550 11763653 11779241 NC_060938.1 CM021581.2 99.83 True relocation, inconsistency = 304079 11947304 11948663 11782916 11784275 NC_060938.1 CM021581.2 99.17 True relocation, inconsistency = -1454555 10494109 10499949 11784276 11790116 NC_060938.1 CM021581.2 99.12 True relocation, inconsistency = -129578 10370372 10379455 11790117 11799200 NC_060938.1 CM021581.2 99.01 True relocation, inconsistency = 62742 10442272 10451393 11799275 11808396 NC_060938.1 CM021581.2 99.17 True relocation, inconsistency = -65470 10385924 10387742 11808397 11810215 NC_060938.1 CM021581.2 99.04 True relocation, inconsistency = 1282774 11670517 11675895 11810216 11815596 NC_060938.1 CM021581.2 99.54 True indel: stretch of mismatches 11675896 11685795 11815597 11825496 NC_060938.1 CM021581.2 99.86 True relocation, inconsistency = -625301 11060495 11062464 11825497 11827466 NC_060938.1 CM021581.2 99.33 True relocation, inconsistency = -414720 10648007 10652290 11827729 11832012 NC_060938.1 CM021581.2 99.17 True relocation, inconsistency = -151362 10500929 10506192 11832013 11837276 NC_060938.1 CM021581.2 99.01 True relocation, inconsistency = -275285 10230908 10239717 11837277 11846086 NC_060938.1 CM021581.2 99.13 True relocation, inconsistency = 259769 10499728 10505397 11846328 11851993 NC_060938.1 CM021581.2 98.98 True local misassembly 10498578 10508681 11851994 11862096 NC_060938.1 CM021581.2 98.96 True relocation, inconsistency = 128178 10636860 10641905 11862097 11867142 NC_060938.1 CM021581.2 98.95 True local misassembly 10648722 10654031 11867143 11872452 NC_060938.1 CM021581.2 98.97 True relocation, inconsistency = -155454 10498578 10508681 11872453 11882556 NC_060938.1 CM021581.2 99.1 True relocation, inconsistency = 1220024 11729162 11785976 11883013 11939829 NC_060938.1 CM021581.2 99.92 True relocation, inconsistency = -1278641 10507336 10511386 11939830 11943880 NC_060938.1 CM021581.2 99.12 True relocation, inconsistency = 599128 11120178 11122091 11953544 11955457 NC_060938.1 CM021581.2 98.75 True relocation, inconsistency = -960679 10166481 10169005 11960526 11963050 NC_060938.1 CM021581.2 97.66 True relocation, inconsistency = -13293 10155927 10160711 11963265 11968051 NC_060938.1 CM021581.2 98.33 True translocation 12874341 12875337 11968052 11969048 NC_060946.1 CM021581.2 98.79 True translocation 11815189 11828878 11969049 11982738 NC_060938.1 CM021581.2 99.72 True local misassembly 11848933 11858806 12002797 12012611 NC_060938.1 CM021581.2 99.0 True translocation 14579289 14581717 12012612 12015040 NC_060946.1 CM021581.2 98.82 True translocation 10355836 10358405 12024564 12027134 NC_060938.1 CM021581.2 97.36 True relocation, inconsistency = 1514908 11889569 11912419 12043390 12066240 NC_060938.1 CM021581.2 99.96 True indel: stretch of mismatches 11912420 11925552 12066241 12079373 NC_060938.1 CM021581.2 100.0 True indel: stretch of mismatches 11925553 11927207 12079374 12081028 NC_060938.1 CM021581.2 99.97 True indel: stretch of mismatches 11927208 11940041 12081029 12093862 NC_060938.1 CM021581.2 99.82 True relocation, inconsistency = 616439 12556481 12560579 12093863 12097961 NC_060938.1 CM021581.2 98.87 True relocation, inconsistency = -696223 11867520 11872498 12101125 12106107 NC_060938.1 CM021581.2 99.56 True local misassembly 11867516 11872498 12106577 12111563 NC_060938.1 CM021581.2 99.54 True relocation, inconsistency = -1525827 10378175 10383621 12143067 12148513 NC_060938.1 CM021581.2 99.12 True relocation, inconsistency = 87294 10470916 10481401 12148514 12158999 NC_060938.1 CM021581.2 99.21 True relocation, inconsistency = 17732 10499134 10505930 12159000 12165796 NC_060938.1 CM021581.2 98.91 True relocation, inconsistency = 111472 10627743 10631533 12176137 12179926 NC_060938.1 CM021581.2 98.95 True relocation, inconsistency = 1394565 12026099 12030190 12179927 12184018 NC_060938.1 CM021581.2 99.98 True indel: stretch of mismatches 12030191 12042746 12184019 12196574 NC_060938.1 CM021581.2 99.98 True indel: stretch of mismatches 12042747 12045192 12196575 12199020 NC_060938.1 CM021581.2 100.0 True indel: stretch of mismatches 12045193 12055974 12199021 12209802 NC_060938.1 CM021581.2 100.0 True relocation, inconsistency = -677794 11378181 11379716 12209803 12211338 NC_060938.1 CM021581.2 99.95 True indel: stretch of mismatches 11379717 11389092 12211339 12220712 NC_060938.1 CM021581.2 99.86 True relocation, inconsistency = -682725 10716724 10724076 12231069 12238421 NC_060938.1 CM021581.2 99.05 True relocation, inconsistency = -593993 10130084 10134175 12238422 12242513 NC_060938.1 CM021581.2 97.73 True relocation, inconsistency = 175009 10326610 10333734 12259939 12267065 NC_060938.1 CM021581.2 97.78 True relocation, inconsistency = 1423580 11757315 11758908 12267066 12268659 NC_060938.1 CM021581.2 98.9 True relocation, inconsistency = 41571 11800480 11806855 12268660 12275035 NC_060938.1 CM021581.2 98.78 True relocation, inconsistency = -690757 11116099 11117463 12275036 12276400 NC_060938.1 CM021581.2 98.29 True local misassembly 11117802 11121131 12276401 12279730 NC_060938.1 CM021581.2 99.07 True relocation, inconsistency = -890097 10231035 10237840 12279731 12286536 NC_060938.1 CM021581.2 98.77 True relocation, inconsistency = 470243 10714987 10718882 12293440 12297335 NC_060938.1 CM021581.2 99.0 True relocation, inconsistency = -222238 10496645 10505930 12297336 12306621 NC_060938.1 CM021581.2 98.99 True relocation, inconsistency = 1964605 12470536 12477174 12306622 12313260 NC_060938.1 CM021581.2 99.21 True translocation 15590227 15601501 12315923 12327197 NC_060946.1 CM021581.2 98.71 True relocation, inconsistency = -21814 15579688 15605106 12327198 12352624 NC_060946.1 CM021581.2 98.69 True relocation, inconsistency = -21818 15583289 15605106 12352625 12374443 NC_060946.1 CM021581.2 98.5 True translocation 10237097 10240455 12374444 12377802 NC_060938.1 CM021581.2 98.99 True local misassembly 10236364 10244104 12377803 12385543 NC_060938.1 CM021581.2 99.02 True relocation, inconsistency = 252097 10496645 10508477 12385987 12397819 NC_060938.1 CM021581.2 98.76 True relocation, inconsistency = 1220024 11729141 11731867 12398459 12401186 NC_060938.1 CM021581.2 99.44 True relocation, inconsistency = -1187291 10544577 10548178 12401187 12404788 NC_060938.1 CM021581.2 98.94 True relocation, inconsistency = 1702786 12250965 12283208 12404789 12437032 NC_060938.1 CM021581.2 99.86 True relocation, inconsistency = -2046267 10236942 10239091 12437033 12439182 NC_060938.1 CM021581.2 98.82 True local misassembly 10236364 10242750 12439183 12445569 NC_060938.1 CM021581.2 98.84 True relocation, inconsistency = 2048995 12291746 12337762 12445570 12491586 NC_060938.1 CM021581.2 99.94 True relocation, inconsistency = -1835070 10502693 10506192 12491587 12495086 NC_060938.1 CM021581.2 98.95 True relocation, inconsistency = -275285 10230908 10235578 12495087 12499757 NC_060938.1 CM021581.2 99.07 True relocation, inconsistency = 1466668 11702247 11717609 12499758 12515122 NC_060938.1 CM021581.2 99.66 True relocation, inconsistency = -995058 10722552 10725440 12515123 12518011 NC_060938.1 CM021581.2 99.21 True relocation, inconsistency = 1638745 12369630 12472406 12523456 12626232 NC_060938.1 CM021581.2 99.93 True relocation, inconsistency = -2239890 10232841 10237914 12626557 12631630 NC_060938.1 CM021581.2 99.06 True relocation, inconsistency = 1518485 11756400 11764479 12631631 12639713 NC_060938.1 CM021581.2 99.17 True relocation, inconsistency = -1052331 10716724 10724907 12644289 12652472 NC_060938.1 CM021581.2 99.08 True relocation, inconsistency = -472979 10251929 10254274 12652473 12654818 NC_060938.1 CM021581.2 98.73 True local misassembly 10250187 10261004 12654819 12665639 NC_060938.1 CM021581.2 98.88 True relocation, inconsistency = -121700 10139319 10147434 12665654 12673775 NC_060938.1 CM021581.2 98.4 True relocation, inconsistency = 345168 10499364 10505543 12680537 12686716 NC_060938.1 CM021581.2 98.87 True relocation, inconsistency = -129578 10375966 10383555 12686717 12694304 NC_060938.1 CM021581.2 98.87 True relocation, inconsistency = 662586 11046142 11052290 12694305 12700450 NC_060938.1 CM021581.2 98.81 True relocation, inconsistency = 1483430 12535839 12539222 12700569 12703952 NC_060938.1 CM021581.2 99.02 True relocation, inconsistency = -2180108 10359115 10365750 12703953 12710593 NC_060938.1 CM021581.2 97.11 True relocation, inconsistency = -79402 10286349 10287750 12710594 12711995 NC_060938.1 CM021581.2 98.28 True relocation, inconsistency = 2323624 12618586 12624059 12719207 12724680 NC_060938.1 CM021581.2 98.87 True relocation, inconsistency = -53199 12577898 12593215 12731718 12747036 NC_060938.1 CM021581.2 99.7 True local misassembly 12600170 12605570 12753991 12759391 NC_060938.1 CM021581.2 98.98 True local misassembly 12637041 12638743 12785408 12787110 NC_060938.1 CM021581.2 99.11 True local misassembly 12633288 12670314 12787111 12824135 NC_060938.1 CM021581.2 99.67 True translocation 12911467 12913120 12824136 12825791 NC_060946.1 CM021581.2 97.48 True local misassembly 12919936 12920445 12825792 12826301 NC_060946.1 CM021581.2 98.91 True indel: indel (<= 5bp) 12920446 12923680 12826304 12829538 NC_060946.1 CM021581.2 97.99 True local misassembly 12924023 12925897 12829539 12831413 NC_060946.1 CM021581.2 97.28 True indel: indel (<= 5bp) 12925900 12927761 12831414 12833275 NC_060946.1 CM021581.2 97.15 True local misassembly 12928104 12929816 12833276 12834988 NC_060946.1 CM021581.2 97.14 True indel: indel (<= 5bp) 12929817 12931246 12834990 12836419 NC_060946.1 CM021581.2 97.34 True indel: indel (<= 5bp) 12931248 12932587 12836420 12837759 NC_060946.1 CM021581.2 97.39 True indel: indel (<= 5bp) 12932588 12936614 12837762 12841788 NC_060946.1 CM021581.2 97.99 True translocation 12688291 12721187 12842127 12875023 NC_060938.1 CM021581.2 99.69 True local misassembly 12721708 12730942 12875544 12884778 NC_060938.1 CM021581.2 99.98 True local misassembly 12728721 12738717 12884779 12894774 NC_060938.1 CM021581.2 99.88 True local misassembly 12740940 13323786 12894775 13476337 NC_060938.1 CM021581.2 99.46 True local misassembly 13326470 13700990 13478838 13851536 NC_060938.1 CM021581.2 98.97 True local misassembly 13703597 13804997 13853796 13954996 NC_060938.1 CM021581.2 99.03 True local misassembly 13805036 14431040 13955290 14581562 NC_060938.1 CM021581.2 99.56 True local misassembly 14434866 14992922 14584123 15141230 NC_060938.1 CM021581.2 99.51 True local misassembly 14993166 16390641 15141236 16542199 NC_060938.1 CM021581.2 99.4 True indel: indel (> 5bp) 16390998 28224773 16542563 28381637 NC_060938.1 CM021581.2 99.7 True local misassembly 28225264 28746612 28381942 28902701 NC_060938.1 CM021581.2 99.36 True inversion 28748493 28751286 28905495 28902702 NC_060938.1 CM021581.2 99.73 True local misassembly 28746789 28748198 28909922 28908513 NC_060938.1 CM021581.2 100.0 True inversion 28751287 28933977 28910080 29089595 NC_060938.1 CM021581.2 97.96 True indel: indel (<= 5bp) 28934071 30136682 29089691 30303605 NC_060938.1 CM021581.2 98.86 True local misassembly 30137685 30437909 30304473 30604750 NC_060938.1 CM021581.2 99.62 True indel: stretch of mismatches 30438135 31229640 30604976 31396566 NC_060938.1 CM021581.2 99.77 True indel: indel (> 5bp) 31229841 32289833 31396760 32456741 NC_060938.1 CM021581.2 99.88 True local misassembly 32290079 36520927 32458116 36691774 NC_060938.1 CM021581.2 99.78 True indel: indel (> 5bp) 36521107 38606430 36692016 38777747 NC_060938.1 CM021581.2 99.82 True indel: stretch of mismatches 38606431 43221127 38777748 43384563 NC_060938.1 CM021581.2 99.64 True local misassembly 43221223 44279766 43387147 44445224 NC_060938.1 CM021581.2 99.83 True local misassembly 44279911 46737437 44445225 46902314 NC_060938.1 CM021581.2 99.81 True indel: indel (> 5bp) 46737752 50876640 46902585 51044927 NC_060938.1 CM021581.2 99.75 True indel: stretch of mismatches 50876641 62563193 51044928 62734726 NC_060938.1 CM021581.2 99.76 True local misassembly 62563740 62648284 62734727 62819270 NC_060938.1 CM021581.2 99.85 True indel: indel (<= 5bp) 62648520 64630611 62819504 64804844 NC_060938.1 CM021581.2 99.23 True local misassembly 64630958 64937086 64805057 65110919 NC_060938.1 CM021581.2 99.73 True fake: not a misassembly (possible transposable element) 35524960 35531003 65116963 65110920 NC_060940.1 CM021581.2 99.92 True fake: not a misassembly (possible transposable element) 64937064 65031469 65116985 65211321 NC_060938.1 CM021581.2 99.63 True indel: indel (> 5bp) 65031568 67736888 65211450 67916262 NC_060938.1 CM021581.2 99.83 True relocation, inconsistency = 27727 67764616 70542258 67916263 70693660 NC_060938.1 CM021581.2 99.78 True indel: indel (> 5bp) 70542413 73466378 70693787 73618261 NC_060938.1 CM021581.2 99.77 True local misassembly 73467239 75672595 73619485 75821808 NC_060938.1 CM021581.2 99.7 True local misassembly 75673806 80525686 75822479 80666414 NC_060938.1 CM021581.2 99.67 True indel: indel (> 5bp) 80525765 83354270 80666450 83493904 NC_060938.1 CM021581.2 99.85 True indel: indel (<= 5bp) 83354422 84920146 83494054 85058353 NC_060938.1 CM021581.2 99.77 True indel: indel (> 5bp) 84920110 86480679 85058354 86615408 NC_060938.1 CM021581.2 99.41 True indel: indel (> 5bp) 86480860 86776639 86615615 86911397 NC_060938.1 CM021581.2 99.88 True local misassembly 86778974 87102966 86912738 87236692 NC_060938.1 CM021581.2 99.77 True local misassembly 87104762 87390519 87236693 87522401 NC_060938.1 CM021581.2 99.74 True indel: indel (> 5bp) 87390844 87949568 87522802 88086112 NC_060938.1 CM021581.2 98.79 True local misassembly 87949457 88372758 88086281 88509436 NC_060938.1 CM021581.2 99.75 True indel: indel (> 5bp) 88372837 89813272 88509535 89949555 NC_060938.1 CM021581.2 99.63 True local misassembly 89814203 92020234 89950931 92157008 NC_060938.1 CM021581.2 99.78 True local misassembly 92020813 94159428 92157552 94297538 NC_060938.1 CM021581.2 99.78 True local misassembly 94160006 94185552 94298041 94323602 NC_060938.1 CM021581.2 99.5 True local misassembly 94186004 94919495 94324708 95058412 NC_060938.1 CM021581.2 99.82 True local misassembly 94921299 95107461 95061013 95247229 NC_060938.1 CM021581.2 99.54 True local misassembly 95107531 95192986 95247386 95332693 NC_060938.1 CM021581.2 99.43 True local misassembly 95192716 95273670 95334590 95415543 NC_060938.1 CM021581.2 99.71 True indel: indel (> 5bp) 95273924 96018070 95415758 96159888 NC_060938.1 CM021581.2 99.59 True local misassembly 96018213 96719838 96160173 96861587 NC_060938.1 CM021581.2 99.71 True indel: indel (<= 5bp) 96719907 98542194 96861655 98682807 NC_060938.1 CM021581.2 99.51 True local misassembly 98542314 98791445 98683212 98932488 NC_060938.1 CM021581.2 99.35 True indel: indel (> 5bp) 98791504 99100962 98932559 99242095 NC_060938.1 CM021581.2 99.39 True indel: indel (> 5bp) 99101082 99194920 99242284 99335715 NC_060938.1 CM021581.2 98.15 True local misassembly 99195620 99725799 99335920 99867439 NC_060938.1 CM021581.2 98.71 True local misassembly 99726880 100136188 99868727 100274456 NC_060938.1 CM021581.2 98.96 True relocation, inconsistency = 20986 100157180 100164596 100274462 100281955 NC_060938.1 CM021581.2 97.39 True indel: indel (<= 5bp) 100164629 100345769 100281985 100463124 NC_060938.1 CM021581.2 99.77 True relocation, inconsistency = 248599 100600783 100601804 100469539 100470555 NC_060938.1 CM021581.2 96.67 True relocation, inconsistency = 370462 100976323 100977024 100474612 100475314 NC_060938.1 CM021581.2 96.02 True relocation, inconsistency = 128214 101129533 101130188 100499609 100500264 NC_060938.1 CM021581.2 96.95 True relocation, inconsistency = -746934 100384696 100387809 100501706 100504813 NC_060938.1 CM021581.2 98.43 True indel: indel (<= 5bp) 100387863 100650097 100504870 100766695 NC_060938.1 CM021581.2 99.55 True relocation, inconsistency = 25038 100675136 100742455 100766696 100834039 NC_060938.1 CM021581.2 99.64 True local misassembly 100743010 100743877 100834579 100835446 NC_060938.1 CM021581.2 97.93 True indel: indel (<= 5bp) 100743984 101160184 100835556 101251545 NC_060938.1 CM021581.2 99.76 True indel: indel (> 5bp) 101160657 101161492 101252003 101252837 NC_060938.1 CM021581.2 99.64 True CONTIG CM021581.2 101252837 misassembled 1 136094 1 135839 NC_060939.1 CM021582.2 99.25 True indel: indel (<= 5bp) 136384 219678 136130 219380 NC_060939.1 CM021582.2 99.77 True indel: stretch of mismatches 219679 411615 219381 410990 NC_060939.1 CM021582.2 99.51 True relocation, inconsistency = -15775 395841 419523 410991 434674 NC_060939.1 CM021582.2 98.81 True local misassembly 417618 424676 434675 441735 NC_060939.1 CM021582.2 99.45 True relocation, inconsistency = -37281 387396 422047 441736 476385 NC_060939.1 CM021582.2 98.9 True local misassembly 424567 426464 476386 478283 NC_060939.1 CM021582.2 99.25 True indel: stretch of mismatches 426857 472868 478676 524693 NC_060939.1 CM021582.2 98.75 True translocation 1788167 1789793 524814 526441 NC_060946.1 CM021582.2 97.98 True translocation 423648 443743 526442 546471 NC_060939.1 CM021582.2 98.49 True relocation, inconsistency = 50969 494713 566641 546472 618332 NC_060939.1 CM021582.2 99.48 True indel: indel (<= 5bp) 566755 582490 618445 634181 NC_060939.1 CM021582.2 99.58 True local misassembly 584437 657113 636129 708805 NC_060939.1 CM021582.2 99.32 True translocation 1447686 1462734 708806 723760 NC_060946.1 CM021582.2 97.72 True translocation 902447 906778 723761 728093 NC_060939.1 CM021582.2 97.85 True local misassembly 910590 919277 728094 736714 NC_060939.1 CM021582.2 97.42 True relocation, inconsistency = -405289 513989 515320 736715 738046 NC_060939.1 CM021582.2 98.63 True relocation, inconsistency = 171240 686561 720535 738047 772023 NC_060939.1 CM021582.2 98.42 True indel: stretch of mismatches 720536 742777 772024 794332 NC_060939.1 CM021582.2 98.64 True indel: stretch of mismatches 742778 775038 794333 826594 NC_060939.1 CM021582.2 98.77 True fake: not a misassembly (possible transposable element) 804734 809854 826595 831646 NC_060946.1 CM021582.2 96.54 True fake: not a misassembly (possible transposable element) 780710 805623 832196 857108 NC_060939.1 CM021582.2 98.35 True local misassembly 806188 814416 857672 865830 NC_060939.1 CM021582.2 97.34 True relocation, inconsistency = -179474 634943 640195 865831 871082 NC_060939.1 CM021582.2 97.21 True translocation 579484 580133 877352 878001 NC_060945.1 CM021582.2 97.08 True translocation 829287 847356 880562 898633 NC_060939.1 CM021582.2 98.25 True local misassembly 841719 843269 898634 900124 NC_060939.1 CM021582.2 96.62 True local misassembly 848848 851845 900125 903190 NC_060939.1 CM021582.2 98.38 True translocation 2097475 2110580 903191 916299 NC_060946.1 CM021582.2 98.02 True translocation 870885 874491 916300 919847 NC_060939.1 CM021582.2 97.38 True local misassembly 868761 872653 920037 923929 NC_060939.1 CM021582.2 98.72 True relocation, inconsistency = 7350 880123 881516 924049 925442 NC_060939.1 CM021582.2 97.09 True relocation, inconsistency = -7349 874168 890555 925443 941832 NC_060939.1 CM021582.2 98.85 True indel: stretch of mismatches 890556 911987 941833 963266 NC_060939.1 CM021582.2 99.21 True local misassembly 912601 915781 963267 966447 NC_060939.1 CM021582.2 98.31 True relocation, inconsistency = -26606 889495 911987 966767 989258 NC_060939.1 CM021582.2 98.95 True local misassembly 912601 913383 989259 990041 NC_060939.1 CM021582.2 98.28 True local misassembly 911478 1126720 990042 1205289 NC_060939.1 CM021582.2 99.62 True local misassembly 1133176 1140633 1205290 1212732 NC_060939.1 CM021582.2 99.43 True local misassembly 1141187 1169069 1213256 1241113 NC_060939.1 CM021582.2 99.71 True local misassembly 1169793 1192945 1241858 1264995 NC_060939.1 CM021582.2 99.07 True local misassembly 1193493 1241703 1265522 1313858 NC_060939.1 CM021582.2 99.02 True local misassembly 1239190 1241703 1313859 1316372 NC_060939.1 CM021582.2 99.81 True local misassembly 1245708 1268973 1317899 1341166 NC_060939.1 CM021582.2 99.52 True indel: stretch of mismatches 1268974 1276809 1341167 1349008 NC_060939.1 CM021582.2 99.06 True indel: stretch of mismatches 1276810 1298956 1349009 1371152 NC_060939.1 CM021582.2 99.37 True indel: stretch of mismatches 1298957 1310920 1371153 1383033 NC_060939.1 CM021582.2 98.81 True fake: not a misassembly (possible transposable element) 1341127 1343043 1385923 1387844 NC_060939.1 CM021582.2 97.49 True fake: not a misassembly (possible transposable element) 1315960 1334519 1387845 1406317 NC_060939.1 CM021582.2 98.96 True local misassembly 1334730 1365749 1406318 1437332 NC_060939.1 CM021582.2 99.42 True indel: indel (<= 5bp) 1365920 1379737 1437499 1451319 NC_060939.1 CM021582.2 99.46 True relocation, inconsistency = 9379 1391858 1397852 1454061 1460054 NC_060939.1 CM021582.2 97.88 True relocation, inconsistency = -18763 1383486 1384257 1464451 1465222 NC_060939.1 CM021582.2 99.09 True indel: indel (<= 5bp) 1384258 1385762 1465226 1466730 NC_060939.1 CM021582.2 98.94 True indel: indel (<= 5bp) 1385763 1387795 1466732 1468764 NC_060939.1 CM021582.2 98.82 True indel: indel (<= 5bp) 1387796 1389075 1468766 1470045 NC_060939.1 CM021582.2 98.59 True local misassembly 1389501 1390231 1470847 1471577 NC_060939.1 CM021582.2 98.56 True local misassembly 1385362 1391395 1471578 1477625 NC_060939.1 CM021582.2 97.74 True relocation, inconsistency = 14252 1409005 1411003 1480983 1482976 NC_060939.1 CM021582.2 97.78 True local misassembly 1411382 1422233 1482977 1493814 NC_060939.1 CM021582.2 98.97 True local misassembly 1424912 1430918 1496361 1502373 NC_060939.1 CM021582.2 98.4 True local misassembly 1437058 1452465 1508498 1523906 NC_060939.1 CM021582.2 99.57 True local misassembly 1453744 1466205 1525187 1537649 NC_060939.1 CM021582.2 99.17 True local misassembly 1469745 1471033 1537650 1538933 NC_060939.1 CM021582.2 98.98 True local misassembly 1467664 1478219 1538934 1549496 NC_060939.1 CM021582.2 98.8 True local misassembly 1474744 1477003 1550895 1553107 NC_060939.1 CM021582.2 96.66 True local misassembly 1481831 1518191 1553108 1589107 NC_060939.1 CM021582.2 98.33 True local misassembly 1521668 1522457 1589476 1590265 NC_060939.1 CM021582.2 97.72 True local misassembly 1522913 1523732 1591057 1591876 NC_060939.1 CM021582.2 97.07 True indel: indel (> 5bp) 1523756 1524353 1591877 1592474 NC_060939.1 CM021582.2 96.99 True indel: indel (> 5bp) 1524408 1525150 1592597 1593339 NC_060939.1 CM021582.2 98.38 True local misassembly 1522798 1882613 1593711 1953549 NC_060939.1 CM021582.2 99.76 True indel: stretch of mismatches 1882703 2087703 1953639 2158503 NC_060939.1 CM021582.2 99.52 True indel: stretch of mismatches 2087826 2147026 2158626 2217779 NC_060939.1 CM021582.2 99.47 True indel: indel (> 5bp) 2147223 2274071 2217928 2344773 NC_060939.1 CM021582.2 99.54 True indel: stretch of mismatches 2274087 2332439 2344789 2403042 NC_060939.1 CM021582.2 98.41 True translocation 1923781 1946978 2403043 2426242 NC_060938.1 CM021582.2 98.63 True translocation 2353058 2381368 2426510 2454806 NC_060939.1 CM021582.2 98.94 True indel: indel (> 5bp) 2381553 2507702 2455031 2581459 NC_060939.1 CM021582.2 99.13 True local misassembly 2507862 3511533 2581518 3584734 NC_060939.1 CM021582.2 99.86 True indel: indel (> 5bp) 3511797 4669027 3585029 4741687 NC_060939.1 CM021582.2 99.75 True indel: indel (> 5bp) 4669411 4683452 4742117 4756080 NC_060939.1 CM021582.2 98.64 True local misassembly 4684496 5137885 4757118 5210372 NC_060939.1 CM021582.2 99.8 True local misassembly 5138464 5197989 5210943 5270318 NC_060939.1 CM021582.2 99.3 True indel: indel (> 5bp) 5198236 5272423 5270530 5344741 NC_060939.1 CM021582.2 99.22 True translocation 6502257 6667928 5344742 5510411 NC_060946.1 CM021582.2 98.64 True translocation 5446431 5497830 5511183 5561449 NC_060939.1 CM021582.2 96.83 True local misassembly 5499516 5529141 5562772 5592399 NC_060939.1 CM021582.2 99.55 True indel: indel (> 5bp) 5529390 5970425 5592637 6033690 NC_060939.1 CM021582.2 98.73 True translocation 10206708 10211165 6040774 6045201 NC_060937.1 CM021582.2 95.07 True indel: indel (> 5bp) 10211276 10214257 6045322 6048292 NC_060937.1 CM021582.2 95.08 True indel: stretch of mismatches 10214375 10219462 6048410 6053509 NC_060937.1 CM021582.2 96.54 True translocation 5973161 6124404 6053510 6204749 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 83867 6208272 6262797 6204750 6259473 NC_060939.1 CM021582.2 96.29 True relocation, inconsistency = -89111 6173687 6184202 6259474 6270128 NC_060939.1 CM021582.2 97.22 True relocation, inconsistency = -10509 6173694 6374165 6270129 6470435 NC_060939.1 CM021582.2 98.75 True local misassembly 6379599 6408075 6470436 6498912 NC_060939.1 CM021582.2 99.87 True indel: stretch of mismatches 6408076 6455159 6498913 6546001 NC_060939.1 CM021582.2 99.7 True relocation, inconsistency = 8988 6464148 6524903 6546002 6606794 NC_060939.1 CM021582.2 99.69 True indel: stretch of mismatches 6524904 6571462 6606795 6653334 NC_060939.1 CM021582.2 99.5 True fake: not a misassembly (possible transposable element) 13834439 13835046 6653335 6653942 NC_060939.1 CM021582.2 98.47 True fake: not a misassembly (possible transposable element) 6572168 6630854 6654036 6712819 NC_060939.1 CM021582.2 99.29 True relocation, inconsistency = 10798 6641653 6649066 6712820 6720168 NC_060939.1 CM021582.2 96.87 True relocation, inconsistency = -10868 6638199 6679421 6720169 6761358 NC_060939.1 CM021582.2 99.3 True local misassembly 6679926 6696538 6761763 6778375 NC_060939.1 CM021582.2 99.91 True fake: not a misassembly (possible transposable element) 6390886 6392018 6778376 6779490 NC_060939.1 CM021582.2 97.16 True fake: not a misassembly (possible transposable element) 6697683 6757545 6779491 6839154 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = -112755 6645593 6646859 6839957 6841239 NC_060939.1 CM021582.2 95.44 True relocation, inconsistency = 845966 7492826 7497199 6841240 6845633 NC_060939.1 CM021582.2 98.27 True relocation, inconsistency = -733161 6764039 6805205 6845634 6886796 NC_060939.1 CM021582.2 99.71 True relocation, inconsistency = 1046950 7852156 7852888 6886797 6887529 NC_060939.1 CM021582.2 98.54 True local misassembly 7847498 7860045 6887530 6900064 NC_060939.1 CM021582.2 99.11 True relocation, inconsistency = -7194 7852852 7855045 6900065 6902258 NC_060939.1 CM021582.2 99.36 True indel: stretch of mismatches 7855046 7861657 6902259 6908870 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 3140011 11003190 11008819 6910392 6916028 NC_060939.1 CM021582.2 97.05 True relocation, inconsistency = -4174415 6834821 6841888 6916445 6923498 NC_060939.1 CM021582.2 99.49 True relocation, inconsistency = 1054265 7896154 7911935 6923499 6939281 NC_060939.1 CM021582.2 99.82 True relocation, inconsistency = 18035 7930185 7936427 6939496 6945729 NC_060939.1 CM021582.2 99.4 True relocation, inconsistency = -1072353 6864075 6923003 6945730 7004629 NC_060939.1 CM021582.2 99.9 True relocation, inconsistency = -68766 6854238 6871979 7004630 7022439 NC_060939.1 CM021582.2 99.27 True relocation, inconsistency = 2989876 9861856 9865846 7022440 7026415 NC_060939.1 CM021582.2 99.44 True relocation, inconsistency = -2921053 6944794 6961475 7026416 7043154 NC_060939.1 CM021582.2 99.35 True relocation, inconsistency = -477260 6484216 6493757 7043155 7052725 NC_060939.1 CM021582.2 98.9 True relocation, inconsistency = 477275 6971033 7002358 7052726 7084066 NC_060939.1 CM021582.2 99.72 True indel: stretch of mismatches 7002359 7005443 7084067 7087151 NC_060939.1 CM021582.2 99.97 True indel: stretch of mismatches 7005444 7011821 7087152 7093529 NC_060939.1 CM021582.2 99.98 True local misassembly 7011044 7022040 7094565 7105561 NC_060939.1 CM021582.2 99.77 True relocation, inconsistency = 26965 7049006 7065536 7105562 7122076 NC_060939.1 CM021582.2 99.49 True relocation, inconsistency = 16636 7082173 7104393 7122077 7144555 NC_060939.1 CM021582.2 98.41 True local misassembly 7098993 7131098 7144556 7176651 NC_060939.1 CM021582.2 99.86 True fake: not a misassembly (possible transposable element) 7210548 7211809 7176652 7177913 NC_060939.1 CM021582.2 99.92 True fake: not a misassembly (possible transposable element) 7132361 7142685 7177914 7188238 NC_060939.1 CM021582.2 99.93 True relocation, inconsistency = -95800 7046886 7075217 7188239 7216521 NC_060939.1 CM021582.2 99.65 True relocation, inconsistency = 92165 7167383 7169911 7216522 7219050 NC_060939.1 CM021582.2 99.98 True indel: indel (<= 5bp) 7169917 7177141 7219051 7226275 NC_060939.1 CM021582.2 99.97 True indel: indel (<= 5bp) 7177142 7181414 7226281 7230553 NC_060939.1 CM021582.2 99.94 True relocation, inconsistency = 112176 7293591 7313707 7230554 7250724 NC_060939.1 CM021582.2 99.41 True relocation, inconsistency = -213033 7100675 7103065 7250725 7253115 NC_060939.1 CM021582.2 99.14 True relocation, inconsistency = 3811878 10914944 10922743 7253116 7260905 NC_060939.1 CM021582.2 98.4 True relocation, inconsistency = -3710934 7211810 7235322 7260906 7284418 NC_060939.1 CM021582.2 99.88 True relocation, inconsistency = 756676 7991999 8001145 7284419 7293565 NC_060939.1 CM021582.2 99.62 True relocation, inconsistency = -758474 7242672 7255918 7293566 7306807 NC_060939.1 CM021582.2 99.66 True relocation, inconsistency = 31186 7287105 7313707 7306808 7333387 NC_060939.1 CM021582.2 99.15 True relocation, inconsistency = -17889 7296342 7313254 7333911 7350902 NC_060939.1 CM021582.2 99.18 True relocation, inconsistency = -26913 7286342 7305294 7350903 7369846 NC_060939.1 CM021582.2 99.36 True relocation, inconsistency = 3670627 10975922 10985182 7369847 7379077 NC_060939.1 CM021582.2 99.04 True relocation, inconsistency = -3659930 7325253 7345611 7379078 7399440 NC_060939.1 CM021582.2 99.33 True relocation, inconsistency = 2733443 10079055 10093277 7399441 7413658 NC_060939.1 CM021582.2 99.82 True relocation, inconsistency = -2740651 7352834 7358578 7413866 7419610 NC_060939.1 CM021582.2 99.95 True indel: stretch of mismatches 7358579 7383040 7419611 7444032 NC_060939.1 CM021582.2 99.77 True relocation, inconsistency = 2877226 10260267 10265117 7444033 7448888 NC_060939.1 CM021582.2 99.39 True relocation, inconsistency = -7208 10257910 10269780 7448889 7460744 NC_060939.1 CM021582.2 99.68 True relocation, inconsistency = -2853881 7415900 7446578 7460745 7491398 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 803835 8250431 8255621 7491416 7496616 NC_060939.1 CM021582.2 98.86 True relocation, inconsistency = -803846 7451776 7460657 7496617 7505498 NC_060939.1 CM021582.2 99.98 True local misassembly 7462466 7466362 7505499 7509395 NC_060939.1 CM021582.2 99.78 True local misassembly 7468166 7500955 7509396 7542184 NC_060939.1 CM021582.2 99.86 True fake: not a misassembly (possible transposable element) 11162711 11168092 7546277 7551668 NC_060939.1 CM021582.2 99.36 True fake: not a misassembly (possible transposable element) 7508646 7526694 7551669 7569717 NC_060939.1 CM021582.2 99.93 True indel: stretch of mismatches 7526695 7547135 7569718 7590148 NC_060939.1 CM021582.2 99.91 True local misassembly 7550739 7554586 7590149 7593996 NC_060939.1 CM021582.2 99.41 True relocation, inconsistency = 8945 7563532 7593378 7593997 7624028 NC_060939.1 CM021582.2 98.79 True local misassembly 7591750 7598701 7624029 7630980 NC_060939.1 CM021582.2 99.07 True local misassembly 7596906 7606409 7630981 7640482 NC_060939.1 CM021582.2 99.24 True local misassembly 7609993 7648617 7640483 7679117 NC_060939.1 CM021582.2 99.79 True relocation, inconsistency = 7176 7655794 7725513 7679118 7748817 NC_060939.1 CM021582.2 99.82 True indel: stretch of mismatches 7725514 7742745 7748818 7766554 NC_060939.1 CM021582.2 97.44 True relocation, inconsistency = 32320 7775066 7777839 7766555 7769328 NC_060939.1 CM021582.2 99.61 True local misassembly 7776036 7805007 7769329 7798295 NC_060939.1 CM021582.2 99.58 True relocation, inconsistency = -32307 7772701 7777839 7798296 7803434 NC_060939.1 CM021582.2 99.64 True local misassembly 7776036 7793577 7803435 7820966 NC_060939.1 CM021582.2 99.68 True relocation, inconsistency = -41272 7752306 7774047 7820967 7842698 NC_060939.1 CM021582.2 99.79 True local misassembly 7770455 7777839 7842699 7850083 NC_060939.1 CM021582.2 99.65 True local misassembly 7776036 7795148 7850084 7869186 NC_060939.1 CM021582.2 99.68 True relocation, inconsistency = 8955 7804338 7818592 7869421 7883665 NC_060939.1 CM021582.2 99.68 True local misassembly 7814995 7866546 7883666 7935227 NC_060939.1 CM021582.2 99.87 True local misassembly 7872933 7898635 7935614 7961430 NC_060939.1 CM021582.2 99.45 True relocation, inconsistency = -9030 7889606 7900290 7961431 7972111 NC_060939.1 CM021582.2 99.73 True local misassembly 7898474 7901590 7972112 7975228 NC_060939.1 CM021582.2 99.63 True local misassembly 7896154 7911935 7975229 7991011 NC_060939.1 CM021582.2 99.82 True local misassembly 7910339 7967465 7991222 8048333 NC_060939.1 CM021582.2 99.9 True relocation, inconsistency = 2002246 9969712 9991300 8048334 8069679 NC_060939.1 CM021582.2 98.22 True relocation, inconsistency = -2000628 7990673 8008236 8069680 8087243 NC_060939.1 CM021582.2 99.95 True indel: stretch of mismatches 8008237 8011832 8087244 8090839 NC_060939.1 CM021582.2 99.97 True indel: stretch of mismatches 8011833 8028028 8090840 8107040 NC_060939.1 CM021582.2 99.58 True relocation, inconsistency = 2988461 11016490 11021817 8107041 8112369 NC_060939.1 CM021582.2 99.42 True relocation, inconsistency = -2988492 8033326 8072363 8112370 8151407 NC_060939.1 CM021582.2 99.88 True indel: stretch of mismatches 8072364 8080140 8151408 8159184 NC_060939.1 CM021582.2 99.94 True indel: stretch of mismatches 8080141 8107876 8159185 8186920 NC_060939.1 CM021582.2 99.96 True indel: stretch of mismatches 8107877 8275605 8186921 8354684 NC_060939.1 CM021582.2 99.82 True indel: stretch of mismatches 8275606 8298369 8354685 8377438 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = 2038044 10360822 10362336 8401847 8403361 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = -2041547 8320790 8330007 8403362 8412600 NC_060939.1 CM021582.2 99.22 True local misassembly 8335401 8351944 8412622 8429225 NC_060939.1 CM021582.2 99.44 True relocation, inconsistency = 7191 8359136 8367368 8429226 8437458 NC_060939.1 CM021582.2 99.59 True relocation, inconsistency = -16176 8351193 8352356 8437459 8438622 NC_060939.1 CM021582.2 99.45 True local misassembly 8354151 8360118 8438623 8444575 NC_060939.1 CM021582.2 99.62 True relocation, inconsistency = -8985 8351134 8379026 8444576 8472438 NC_060939.1 CM021582.2 99.81 True fake: not a misassembly (possible transposable element) 7555281 7557990 8472439 8475148 NC_060939.1 CM021582.2 99.73 True fake: not a misassembly (possible transposable element) 8376355 8395822 8475149 8494621 NC_060939.1 CM021582.2 99.6 True relocation, inconsistency = -12456 8383367 8395105 8494622 8506338 NC_060939.1 CM021582.2 99.04 True local misassembly 8389798 8400452 8506339 8516982 NC_060939.1 CM021582.2 97.17 True relocation, inconsistency = -10655 8389798 8438777 8516983 8565936 NC_060939.1 CM021582.2 99.34 True local misassembly 8435165 8447470 8565937 8578212 NC_060939.1 CM021582.2 98.98 True relocation, inconsistency = 2890484 11337955 11353271 8578213 8593539 NC_060939.1 CM021582.2 98.68 True local misassembly 11349669 11364028 8593540 8607838 NC_060939.1 CM021582.2 98.8 True relocation, inconsistency = -3724366 7639663 7660818 8607839 8629085 NC_060939.1 CM021582.2 99.02 True relocation, inconsistency = 817756 8478575 8514685 8629086 8665211 NC_060939.1 CM021582.2 99.88 True indel: stretch of mismatches 8514686 8530153 8665212 8680680 NC_060939.1 CM021582.2 99.79 True indel: stretch of mismatches 8530154 8559670 8680681 8710182 NC_060939.1 CM021582.2 99.47 True relocation, inconsistency = 10794 8570465 8580015 8710183 8719733 NC_060939.1 CM021582.2 99.44 True relocation, inconsistency = -8975 8571041 8599138 8719734 8747796 NC_060939.1 CM021582.2 99.74 True local misassembly 8600933 8614581 8747797 8761445 NC_060939.1 CM021582.2 99.8 True local misassembly 8621028 8696842 8761446 8837300 NC_060939.1 CM021582.2 99.63 True local misassembly 8700446 8716787 8837301 8853637 NC_060939.1 CM021582.2 99.32 True local misassembly 8713271 8749548 8853638 8889911 NC_060939.1 CM021582.2 99.7 True local misassembly 8753167 8813731 8889912 8950486 NC_060939.1 CM021582.2 99.69 True relocation, inconsistency = 12568 8826300 8833151 8950487 8957372 NC_060939.1 CM021582.2 98.29 True local misassembly 8831363 8840030 8957373 8966055 NC_060939.1 CM021582.2 99.01 True local misassembly 8841800 8862298 8966056 8986538 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = 3962583 12824882 12832248 8986539 8993900 NC_060939.1 CM021582.2 98.47 True relocation, inconsistency = -1044949 11787300 11791889 8993901 8998490 NC_060939.1 CM021582.2 99.66 True indel: indel (> 5bp) 11791945 11793919 8998491 9000465 NC_060939.1 CM021582.2 99.8 True indel: indel (<= 5bp) 11793920 11797506 9000471 9004057 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 77436 11875290 11879458 9004405 9008579 NC_060939.1 CM021582.2 97.92 True relocation, inconsistency = 1002333 12881792 12915825 9008580 9042626 NC_060939.1 CM021582.2 99.31 True relocation, inconsistency = -4019632 8896375 8905489 9042808 9051922 NC_060939.1 CM021582.2 98.98 True local misassembly 8907695 8932459 9054128 9078932 NC_060939.1 CM021582.2 99.53 True local misassembly 8936073 8942731 9078933 9085576 NC_060939.1 CM021582.2 99.1 True indel: stretch of mismatches 8942732 8953323 9085577 9096124 NC_060939.1 CM021582.2 98.58 True local misassembly 8951644 8976128 9096243 9120719 NC_060939.1 CM021582.2 99.64 True relocation, inconsistency = 4061500 13037629 13052042 9120720 9135195 NC_060939.1 CM021582.2 98.81 True relocation, inconsistency = -4045359 9006684 9040841 9135196 9169434 NC_060939.1 CM021582.2 99.59 True local misassembly 9046244 9077728 9169435 9200914 NC_060939.1 CM021582.2 99.81 True local misassembly 9076306 9087186 9201286 9212165 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 10744 9097931 9147698 9212166 9261898 NC_060939.1 CM021582.2 99.67 True local misassembly 9149493 9172714 9261899 9285140 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = -8930 9164003 9177980 9285359 9299316 NC_060939.1 CM021582.2 99.69 True local misassembly 9179755 9234317 9299317 9353829 NC_060939.1 CM021582.2 99.79 True relocation, inconsistency = 2920942 12155260 12163926 9353830 9362476 NC_060939.1 CM021582.2 99.23 True relocation, inconsistency = 1059846 13223773 13232792 9362477 9371521 NC_060939.1 CM021582.2 99.18 True relocation, inconsistency = -1067027 12165766 12185470 9371522 9391176 NC_060939.1 CM021582.2 99.3 True relocation, inconsistency = -2929957 9255884 9270381 9391547 9405979 NC_060939.1 CM021582.2 98.56 True local misassembly 9266769 9277767 9405980 9416958 NC_060939.1 CM021582.2 98.87 True local misassembly 9275964 9291568 9416959 9432573 NC_060939.1 CM021582.2 99.59 True local misassembly 9286192 9290218 9432574 9436600 NC_060939.1 CM021582.2 99.53 True local misassembly 9289664 9298572 9436601 9445514 NC_060939.1 CM021582.2 99.3 True local misassembly 9302126 9342994 9445515 9486413 NC_060939.1 CM021582.2 99.51 True relocation, inconsistency = 4044804 13387799 13388670 9486414 9487285 NC_060939.1 CM021582.2 99.67 True relocation, inconsistency = -4007289 9381382 9404963 9487286 9510851 NC_060939.1 CM021582.2 99.51 True local misassembly 9401361 9403284 9510852 9512755 NC_060939.1 CM021582.2 98.99 True relocation, inconsistency = 2943554 12346839 12358224 9512756 9524149 NC_060939.1 CM021582.2 99.37 True relocation, inconsistency = -2952494 9405731 9409801 9524150 9528220 NC_060939.1 CM021582.2 99.88 True relocation, inconsistency = 4013769 13427052 13430745 9531702 9535380 NC_060939.1 CM021582.2 98.81 True relocation, inconsistency = -4020944 9409802 9416536 9535381 9542115 NC_060939.1 CM021582.2 99.83 True local misassembly 9420135 9452684 9542116 9574615 NC_060939.1 CM021582.2 99.47 True relocation, inconsistency = -7231 9445454 9460095 9574616 9589258 NC_060939.1 CM021582.2 99.29 True fake: not a misassembly (possible transposable element) 11839318 11842165 9596156 9599003 NC_060939.1 CM021582.2 97.12 True fake: not a misassembly (possible transposable element) 9473408 9487300 9599004 9612896 NC_060939.1 CM021582.2 99.39 True local misassembly 9485528 9535158 9612897 9662470 NC_060939.1 CM021582.2 99.34 True local misassembly 9529743 9547406 9662471 9680100 NC_060939.1 CM021582.2 98.15 True relocation, inconsistency = 7164 9554571 9559215 9680101 9684740 NC_060939.1 CM021582.2 97.88 True local misassembly 9553854 9559151 9684741 9689998 NC_060939.1 CM021582.2 97.63 True local misassembly 9560961 9589714 9689999 9718765 NC_060939.1 CM021582.2 99.35 True relocation, inconsistency = 4070730 13660445 13716255 9718766 9774515 NC_060939.1 CM021582.2 99.0 True relocation, inconsistency = -4114208 9602048 9610080 9774516 9782548 NC_060939.1 CM021582.2 98.29 True relocation, inconsistency = 36520 9646601 9781075 9782549 9917369 NC_060939.1 CM021582.2 99.3 True indel: stretch of mismatches 9781385 9796925 9917679 9933248 NC_060939.1 CM021582.2 99.03 True local misassembly 9802335 9804829 9933249 9935743 NC_060939.1 CM021582.2 99.72 True local misassembly 9806643 9822639 9935744 9951730 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 1040050 10862690 10864604 9951731 9953645 NC_060939.1 CM021582.2 99.45 True relocation, inconsistency = -1002220 9862385 9868407 9953646 9959668 NC_060939.1 CM021582.2 99.32 True local misassembly 9871999 9907098 9959669 9994744 NC_060939.1 CM021582.2 99.8 True local misassembly 9912480 9916482 9994745 9998747 NC_060939.1 CM021582.2 98.94 True relocation, inconsistency = -12526 9903957 9913012 9998748 10007807 NC_060939.1 CM021582.2 99.18 True relocation, inconsistency = -7165 9905848 9919649 10007808 10021598 NC_060939.1 CM021582.2 98.69 True relocation, inconsistency = -2955098 6964552 6966784 10021599 10023841 NC_060939.1 CM021582.2 98.9 True relocation, inconsistency = 2940765 9907550 9918056 10023842 10034347 NC_060939.1 CM021582.2 99.91 True local misassembly 9923491 9962641 10034348 10073503 NC_060939.1 CM021582.2 99.72 True local misassembly 9966254 9992179 10073504 10099406 NC_060939.1 CM021582.2 99.64 True relocation, inconsistency = -2874466 7117714 7127494 10099407 10109207 NC_060939.1 CM021582.2 99.38 True relocation, inconsistency = 2879907 10007402 10030428 10109208 10132225 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = -2702765 7328624 7343403 10133186 10148017 NC_060939.1 CM021582.2 98.84 True relocation, inconsistency = 2704615 10048019 10050011 10148018 10149986 NC_060939.1 CM021582.2 99.38 True indel: stretch of mismatches 10050047 10099576 10150022 10199609 NC_060939.1 CM021582.2 99.74 True local misassembly 10097799 10136655 10199610 10238481 NC_060939.1 CM021582.2 99.69 True relocation, inconsistency = 959016 11095672 11097853 10238482 10240663 NC_060939.1 CM021582.2 99.41 True relocation, inconsistency = -846895 10250959 10254673 10240664 10244342 NC_060939.1 CM021582.2 98.45 True local misassembly 10256473 10261491 10244343 10249351 NC_060939.1 CM021582.2 98.58 True local misassembly 10259679 10289180 10249352 10278808 NC_060939.1 CM021582.2 99.5 True local misassembly 10287382 10311818 10278809 10303218 NC_060939.1 CM021582.2 99.61 True relocation, inconsistency = -122958 10188861 10199761 10303219 10314114 NC_060939.1 CM021582.2 99.54 True fake: not a misassembly (possible transposable element) 7496701 7499932 10314115 10317346 NC_060939.1 CM021582.2 99.26 True fake: not a misassembly (possible transposable element) 10202994 10231136 10317347 10345484 NC_060939.1 CM021582.2 99.93 True local misassembly 10241208 10289180 10355551 10403522 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = -119330 10169851 10187978 10403523 10421685 NC_060939.1 CM021582.2 99.76 True local misassembly 10182623 10193663 10421686 10432745 NC_060939.1 CM021582.2 99.52 True relocation, inconsistency = 122948 10316612 10333620 10432746 10449734 NC_060939.1 CM021582.2 99.49 True fake: not a misassembly (possible transposable element) 10233940 10238913 10449735 10454713 NC_060939.1 CM021582.2 99.87 True fake: not a misassembly (possible transposable element) 10338595 10350491 10454714 10466625 NC_060939.1 CM021582.2 99.69 True local misassembly 10355854 10360658 10466626 10471435 NC_060939.1 CM021582.2 99.9 True indel: stretch of mismatches 10360945 10375102 10471722 10485944 NC_060939.1 CM021582.2 99.4 True relocation, inconsistency = -139034 10236069 10239534 10485945 10489410 NC_060939.1 CM021582.2 99.63 True relocation, inconsistency = 121129 10360806 10402296 10489553 10531033 NC_060939.1 CM021582.2 99.76 True local misassembly 10404071 10407418 10531034 10534381 NC_060939.1 CM021582.2 99.86 True relocation, inconsistency = 26666 10434085 10475148 10534382 10575450 NC_060939.1 CM021582.2 99.02 True local misassembly 10480535 10502725 10575451 10597651 NC_060939.1 CM021582.2 99.47 True local misassembly 10508083 10533281 10597652 10622830 NC_060939.1 CM021582.2 99.54 True relocation, inconsistency = -1837119 8696163 8705019 10622831 10631654 NC_060939.1 CM021582.2 98.6 True relocation, inconsistency = 1833508 10538528 10549943 10631655 10643094 NC_060939.1 CM021582.2 98.77 True local misassembly 10544562 10553257 10643095 10651770 NC_060939.1 CM021582.2 99.16 True relocation, inconsistency = -8979 10544279 10580820 10651771 10688307 NC_060939.1 CM021582.2 99.45 True local misassembly 10582600 10587389 10688308 10693097 NC_060939.1 CM021582.2 99.96 True local misassembly 10592747 10607186 10693098 10707537 NC_060939.1 CM021582.2 99.92 True local misassembly 10601811 10608997 10707538 10714724 NC_060939.1 CM021582.2 99.58 True local misassembly 10605400 10695689 10714725 10804947 NC_060939.1 CM021582.2 99.48 True relocation, inconsistency = -4067452 6628238 6632780 10804948 10809458 NC_060939.1 CM021582.2 97.17 True relocation, inconsistency = 145135 6777916 6787602 10809459 10819131 NC_060939.1 CM021582.2 98.66 True relocation, inconsistency = 3900759 10689074 10700530 10819844 10831273 NC_060939.1 CM021582.2 98.08 True relocation, inconsistency = -4054814 6645717 6647215 10831274 10832767 NC_060939.1 CM021582.2 95.94 True relocation, inconsistency = 130700 6777916 6787602 10832768 10842440 NC_060939.1 CM021582.2 98.68 True relocation, inconsistency = -134246 6653357 6661654 10842441 10850762 NC_060939.1 CM021582.2 97.9 True relocation, inconsistency = 128832 6790487 6800078 10850763 10860343 NC_060939.1 CM021582.2 98.7 True relocation, inconsistency = 3898919 10698998 10742239 10860344 10903590 NC_060939.1 CM021582.2 99.75 True local misassembly 10744048 10749950 10903591 10909493 NC_060939.1 CM021582.2 99.89 True indel: indel (<= 5bp) 10749952 10751114 10909494 10910656 NC_060939.1 CM021582.2 99.74 True local misassembly 10751115 10755961 10912465 10917311 NC_060939.1 CM021582.2 99.9 True indel: indel (> 5bp) 10755972 10757770 10917312 10919110 NC_060939.1 CM021582.2 100.0 True indel: indel (<= 5bp) 10757771 10760667 10919116 10922012 NC_060939.1 CM021582.2 99.9 True relocation, inconsistency = -930134 9830534 9837292 10922013 10928783 NC_060939.1 CM021582.2 99.23 True relocation, inconsistency = 940964 10778257 10798343 10928784 10948906 NC_060939.1 CM021582.2 99.37 True local misassembly 10800723 10843002 10949475 10989910 NC_060939.1 CM021582.2 95.5 True local misassembly 10844816 10850919 10989911 10996014 NC_060939.1 CM021582.2 99.84 True relocation, inconsistency = -9046 10841874 10867972 10996015 11022123 NC_060939.1 CM021582.2 99.63 True relocation, inconsistency = -3815547 7052493 7059660 11022191 11029372 NC_060939.1 CM021582.2 99.45 True relocation, inconsistency = 3824593 10884254 10924119 11029373 11069294 NC_060939.1 CM021582.2 99.6 True local misassembly 10925918 10928635 11069295 11072016 NC_060939.1 CM021582.2 99.59 True local misassembly 10932242 10934052 11072017 11073827 NC_060939.1 CM021582.2 99.67 True local misassembly 10928644 10941041 11073828 11086225 NC_060939.1 CM021582.2 99.86 True indel: stretch of mismatches 10941042 10988537 11086226 11133716 NC_060939.1 CM021582.2 99.93 True indel: stretch of mismatches 10988538 11015965 11133717 11161152 NC_060939.1 CM021582.2 99.82 True indel: stretch of mismatches 11015966 11027874 11161153 11173061 NC_060939.1 CM021582.2 99.84 True indel: stretch of mismatches 11027875 11045277 11173062 11190464 NC_060939.1 CM021582.2 99.88 True local misassembly 11043470 11092127 11190465 11237309 NC_060939.1 CM021582.2 96.06 True relocation, inconsistency = -7222 11084906 11090196 11237310 11242600 NC_060939.1 CM021582.2 99.74 True indel: stretch of mismatches 11090197 11104568 11242601 11256972 NC_060939.1 CM021582.2 99.45 True relocation, inconsistency = -2900367 8204202 8215414 11256973 11268225 NC_060939.1 CM021582.2 99.14 True local misassembly 8220814 8242488 11268226 11289929 NC_060939.1 CM021582.2 99.44 True local misassembly 8237765 8246618 11290608 11299451 NC_060939.1 CM021582.2 99.06 True relocation, inconsistency = 2884242 11130926 11147610 11299517 11316195 NC_060939.1 CM021582.2 99.43 True fake: not a misassembly (possible transposable element) 7486431 7491272 11316196 11321061 NC_060939.1 CM021582.2 98.41 True fake: not a misassembly (possible transposable element) 11156103 11191746 11321062 11356681 NC_060939.1 CM021582.2 99.77 True local misassembly 11225306 11234926 11386648 11396283 NC_060939.1 CM021582.2 99.7 True relocation, inconsistency = -8915 11226012 11231125 11396284 11401397 NC_060939.1 CM021582.2 99.9 True local misassembly 11232905 11242881 11401398 11411374 NC_060939.1 CM021582.2 99.92 True local misassembly 11241088 11242881 11411375 11413168 NC_060939.1 CM021582.2 99.64 True indel: indel (<= 5bp) 11242882 11257228 11413170 11427516 NC_060939.1 CM021582.2 99.97 True indel: indel (> 5bp) 11257229 11260326 11427532 11430629 NC_060939.1 CM021582.2 100.0 True local misassembly 11262121 11273729 11430630 11442238 NC_060939.1 CM021582.2 99.91 True local misassembly 11275912 11293372 11442652 11460137 NC_060939.1 CM021582.2 98.8 True local misassembly 11298744 11336072 11460138 11497455 NC_060939.1 CM021582.2 99.57 True relocation, inconsistency = -2892313 8443760 8456861 11497456 11510547 NC_060939.1 CM021582.2 98.57 True relocation, inconsistency = 2892278 11349140 11408618 11510548 11569986 NC_060939.1 CM021582.2 99.64 True relocation, inconsistency = -10794 11397825 11429711 11569987 11601909 NC_060939.1 CM021582.2 99.72 True relocation, inconsistency = 996824 12426536 12437755 11601910 11613129 NC_060939.1 CM021582.2 99.19 True local misassembly 12432365 12456232 11613130 11636988 NC_060939.1 CM021582.2 99.62 True local misassembly 12459800 12466265 11636989 11643459 NC_060939.1 CM021582.2 99.18 True fake: not a misassembly (possible transposable element) 10596345 10602394 11645920 11651974 NC_060939.1 CM021582.2 98.52 True fake: not a misassembly (possible transposable element) 12475761 12495181 11652865 11672295 NC_060939.1 CM021582.2 99.77 True local misassembly 12493398 12516368 11672296 11695321 NC_060939.1 CM021582.2 99.61 True relocation, inconsistency = -995040 11521329 11524900 11695322 11698893 NC_060939.1 CM021582.2 99.4 True relocation, inconsistency = -8965 11515936 11533123 11698894 11716086 NC_060939.1 CM021582.2 99.43 True relocation, inconsistency = 1014718 12547842 12583850 11716087 11752075 NC_060939.1 CM021582.2 99.68 True relocation, inconsistency = -1018372 11565479 11574276 11752076 11760873 NC_060939.1 CM021582.2 99.06 True relocation, inconsistency = 1025543 12599820 12653925 11760874 11814999 NC_060939.1 CM021582.2 99.74 True fake: not a misassembly (possible transposable element) 11653363 11657141 11815000 11818748 NC_060939.1 CM021582.2 97.04 True fake: not a misassembly (possible transposable element) 12659429 12664451 11818749 11823726 NC_060939.1 CM021582.2 99.21 True relocation, inconsistency = -1013061 11651391 11696699 11823727 11869070 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 1004111 12700811 12719057 11869071 11887287 NC_060939.1 CM021582.2 99.02 True relocation, inconsistency = -3916259 8802799 8805747 11887288 11890236 NC_060939.1 CM021582.2 98.41 True relocation, inconsistency = 2906796 11712544 11760176 11890237 11937838 NC_060939.1 CM021582.2 99.54 True local misassembly 11758373 11763192 11937839 11942632 NC_060939.1 CM021582.2 97.86 True local misassembly 11757781 11774981 11942633 11959858 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = 1004081 12779063 12859522 11959859 12040338 NC_060939.1 CM021582.2 99.81 True relocation, inconsistency = -4014249 8845274 8862298 12040339 12057229 NC_060939.1 CM021582.2 98.39 True relocation, inconsistency = 3962583 12824882 12832248 12057230 12064591 NC_060939.1 CM021582.2 98.47 True relocation, inconsistency = -1044949 11787300 11791889 12064592 12069181 NC_060939.1 CM021582.2 99.66 True indel: indel (> 5bp) 11791945 11793919 12069182 12071156 NC_060939.1 CM021582.2 99.8 True indel: indel (<= 5bp) 11793920 11797506 12071162 12074748 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = 77436 11875290 11879458 12075096 12079270 NC_060939.1 CM021582.2 98.0 True relocation, inconsistency = 1002333 12881792 12915825 12079271 12113317 NC_060939.1 CM021582.2 99.32 True relocation, inconsistency = -4019632 8896375 8908974 12113499 12126098 NC_060939.1 CM021582.2 99.14 True local misassembly 8913107 8929657 12130231 12146831 NC_060939.1 CM021582.2 99.39 True local misassembly 8933266 8953446 12146832 12167002 NC_060939.1 CM021582.2 99.48 True local misassembly 8951649 8976128 12167003 12191493 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 3017796 11993925 12008338 12191494 12205970 NC_060939.1 CM021582.2 98.82 True relocation, inconsistency = -3001655 9006684 9040841 12205971 12240209 NC_060939.1 CM021582.2 99.59 True local misassembly 9046244 9077728 12240210 12271689 NC_060939.1 CM021582.2 99.81 True local misassembly 9076306 9087186 12272061 12282940 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 10744 9097931 9147698 12282941 12332673 NC_060939.1 CM021582.2 99.67 True local misassembly 9149493 9172714 12332674 12355915 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = -8930 9164003 9177980 12356134 12370091 NC_060939.1 CM021582.2 99.69 True local misassembly 9179755 9234317 12370092 12424604 NC_060939.1 CM021582.2 99.79 True relocation, inconsistency = 2920942 12155260 12163926 12424605 12433251 NC_060939.1 CM021582.2 99.23 True relocation, inconsistency = 1059846 13223773 13232792 12433252 12442296 NC_060939.1 CM021582.2 99.18 True relocation, inconsistency = -1067027 12165766 12185470 12442297 12461951 NC_060939.1 CM021582.2 99.3 True relocation, inconsistency = 8920 12194542 12212825 12462103 12480251 NC_060939.1 CM021582.2 98.0 True relocation, inconsistency = -2942535 9270291 9277563 12480252 12487524 NC_060939.1 CM021582.2 99.99 True local misassembly 9275964 9287518 12487734 12499293 NC_060939.1 CM021582.2 99.59 True local misassembly 9282157 9298572 12499294 12516289 NC_060939.1 CM021582.2 97.2 True local misassembly 9302126 9342994 12516290 12557188 NC_060939.1 CM021582.2 99.51 True relocation, inconsistency = 4044804 13387799 13388670 12557189 12558060 NC_060939.1 CM021582.2 99.67 True relocation, inconsistency = -4007289 9381382 9404963 12558061 12581626 NC_060939.1 CM021582.2 99.52 True local misassembly 9401361 9403284 12581627 12583530 NC_060939.1 CM021582.2 98.99 True relocation, inconsistency = 2943554 12346839 12357360 12583531 12594056 NC_060939.1 CM021582.2 99.32 True relocation, inconsistency = -5908624 6451610 6452218 12596930 12597538 NC_060939.1 CM021582.2 98.69 True local misassembly 6453423 6453993 12598738 12599308 NC_060939.1 CM021582.2 100.0 True relocation, inconsistency = 5908735 12366138 12394731 12602718 12631311 NC_060939.1 CM021582.2 99.83 True indel: stretch of mismatches 12394831 12456202 12631411 12692822 NC_060939.1 CM021582.2 99.8 True relocation, inconsistency = -993232 11462971 11463752 12692823 12693609 NC_060939.1 CM021582.2 98.95 True local misassembly 11461965 11471255 12693610 12702901 NC_060939.1 CM021582.2 99.64 True relocation, inconsistency = 995034 12468806 12474942 12705418 12711549 NC_060939.1 CM021582.2 99.54 True indel: stretch of mismatches 12474943 12498690 12711550 12735287 NC_060939.1 CM021582.2 99.8 True local misassembly 12496877 12500944 12735288 12739355 NC_060939.1 CM021582.2 99.35 True local misassembly 12502744 12518647 12739356 12755284 NC_060939.1 CM021582.2 99.68 True indel: stretch of mismatches 12518648 12583850 12755285 12820467 NC_060939.1 CM021582.2 99.79 True relocation, inconsistency = -1018372 11565479 11574276 12820468 12829265 NC_060939.1 CM021582.2 99.06 True relocation, inconsistency = 1025543 12599820 12653925 12829266 12883391 NC_060939.1 CM021582.2 99.74 True fake: not a misassembly (possible transposable element) 11653363 11657141 12883392 12887140 NC_060939.1 CM021582.2 97.04 True fake: not a misassembly (possible transposable element) 12659429 12664451 12887141 12892118 NC_060939.1 CM021582.2 99.21 True relocation, inconsistency = -1013061 11651391 11696699 12892119 12937462 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 1004111 12700811 12719057 12937463 12955679 NC_060939.1 CM021582.2 99.02 True relocation, inconsistency = -3916259 8802799 8805747 12955680 12958628 NC_060939.1 CM021582.2 98.41 True relocation, inconsistency = 2906796 11712544 11760176 12958629 13006230 NC_060939.1 CM021582.2 99.54 True local misassembly 11758373 11763192 13006231 13011024 NC_060939.1 CM021582.2 97.86 True local misassembly 11757781 11774981 13011025 13028250 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = 1004081 12779063 12860626 13028251 13109834 NC_060939.1 CM021582.2 99.75 True relocation, inconsistency = 12478 12873105 12884912 13109835 13121647 NC_060939.1 CM021582.2 98.99 True local misassembly 12881355 12915843 13121648 13156413 NC_060939.1 CM021582.2 98.88 True relocation, inconsistency = -1013134 11902710 11904701 13156414 13158455 NC_060939.1 CM021582.2 99.19 True relocation, inconsistency = 1031054 12954033 12992222 13176733 13214937 NC_060939.1 CM021582.2 99.81 True relocation, inconsistency = -1040968 11951255 11956219 13214938 13219912 NC_060939.1 CM021582.2 99.68 True indel: stretch of mismatches 11956220 11962908 13219913 13226601 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 1041895 13004804 13019652 13226602 13241460 NC_060939.1 CM021582.2 99.42 True relocation, inconsistency = -1043655 11976337 12005029 13241800 13270488 NC_060939.1 CM021582.2 99.37 True relocation, inconsistency = -8949 11996664 12043952 13271072 13318201 NC_060939.1 CM021582.2 99.44 True local misassembly 12042160 12051130 13318202 13327173 NC_060939.1 CM021582.2 99.57 True relocation, inconsistency = 1043780 13094911 13126755 13327174 13359068 NC_060939.1 CM021582.2 99.43 True relocation, inconsistency = 10694 13137884 13156428 13359503 13378027 NC_060939.1 CM021582.2 99.71 True local misassembly 13152861 13194193 13378028 13419386 NC_060939.1 CM021582.2 99.71 True local misassembly 13192420 13197702 13419387 13424669 NC_060939.1 CM021582.2 99.85 True local misassembly 13201271 13226242 13424670 13449641 NC_060939.1 CM021582.2 99.98 True indel: indel (> 5bp) 13226273 13227326 13449642 13450695 NC_060939.1 CM021582.2 99.53 True indel: indel (> 5bp) 13227327 13228305 13450706 13451684 NC_060939.1 CM021582.2 99.39 True indel: indel (> 5bp) 13228306 13229648 13451700 13453042 NC_060939.1 CM021582.2 98.96 True relocation, inconsistency = -1072444 12157396 12172769 13453234 13468612 NC_060939.1 CM021582.2 99.22 True relocation, inconsistency = 1059851 13232621 13272979 13468613 13508926 NC_060939.1 CM021582.2 99.52 True local misassembly 13274198 13277666 13510135 13513613 NC_060939.1 CM021582.2 98.37 True local misassembly 13286532 13293146 13522469 13529093 NC_060939.1 CM021582.2 99.17 True relocation, inconsistency = 30508 13323655 13328173 13529094 13533602 NC_060939.1 CM021582.2 98.25 True relocation, inconsistency = -4594856 8740277 8741359 13540562 13541644 NC_060939.1 CM021582.2 98.37 True relocation, inconsistency = 4564348 13305708 13335461 13541645 13571408 NC_060939.1 CM021582.2 99.8 True relocation, inconsistency = -3843854 9491608 9497025 13571409 13576841 NC_060939.1 CM021582.2 98.35 True relocation, inconsistency = -44799 9452227 9455279 13576842 13579925 NC_060939.1 CM021582.2 97.85 True relocation, inconsistency = 3888714 13343994 13350673 13579926 13586604 NC_060939.1 CM021582.2 99.36 True local misassembly 13351316 13391529 13587297 13627480 NC_060939.1 CM021582.2 99.84 True indel: stretch of mismatches 13391530 13418995 13627481 13654946 NC_060939.1 CM021582.2 99.9 True relocation, inconsistency = -3737233 9685370 9688702 13658554 13661876 NC_060939.1 CM021582.2 96.22 True relocation, inconsistency = -106283 9582788 9583330 13662245 13662787 NC_060939.1 CM021582.2 98.34 True relocation, inconsistency = 3843759 13437389 13471673 13673087 13707477 NC_060939.1 CM021582.2 99.39 True relocation, inconsistency = -630114 12842770 12850050 13708688 13715938 NC_060939.1 CM021582.2 95.88 True relocation, inconsistency = 630094 13480600 13509789 13716394 13745583 NC_060939.1 CM021582.2 99.74 True relocation, inconsistency = -261378 13248412 13253455 13745584 13750627 NC_060939.1 CM021582.2 98.32 True relocation, inconsistency = 261433 13514889 13560039 13750628 13795812 NC_060939.1 CM021582.2 99.45 True indel: stretch of mismatches 13560040 13616321 13795813 13852106 NC_060939.1 CM021582.2 99.46 True local misassembly 13612715 13645798 13852107 13885180 NC_060939.1 CM021582.2 99.51 True local misassembly 13642224 13719616 13885181 13962585 NC_060939.1 CM021582.2 99.79 True local misassembly 13717848 13758119 13962586 14002852 NC_060939.1 CM021582.2 99.66 True relocation, inconsistency = 31628 13789748 13833293 14002853 14046368 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 9716 13843010 14678463 14046369 14881892 NC_060939.1 CM021582.2 99.84 True local misassembly 14678437 14724057 14887465 14933076 NC_060939.1 CM021582.2 99.92 True relocation, inconsistency = 13557 14737882 14943896 14933344 15139366 NC_060939.1 CM021582.2 99.92 True local misassembly 14948499 15232819 15139367 15423844 NC_060939.1 CM021582.2 99.88 True relocation, inconsistency = 11354 15244174 15442288 15423845 15622012 NC_060939.1 CM021582.2 99.74 True local misassembly 15442577 15455589 15622185 15635181 NC_060939.1 CM021582.2 97.5 True local misassembly 15460100 15468657 15635485 15644059 NC_060939.1 CM021582.2 96.99 True local misassembly 15464522 15468657 15644247 15648382 NC_060939.1 CM021582.2 96.57 True local misassembly 15468961 15473107 15648570 15652699 NC_060939.1 CM021582.2 96.5 True indel: indel (<= 5bp) 15473195 15481985 15652783 15661567 NC_060939.1 CM021582.2 95.9 True indel: indel (<= 5bp) 15482073 15486491 15661651 15666067 NC_060939.1 CM021582.2 95.86 True indel: stretch of mismatches 15486776 15495292 15666352 15674866 NC_060939.1 CM021582.2 98.37 True local misassembly 15499803 15503896 15675170 15679265 NC_060939.1 CM021582.2 96.61 True local misassembly 15504123 15535481 15679610 15710798 NC_060939.1 CM021582.2 99.21 True relocation, inconsistency = 49089 15584571 16022913 15710799 16149035 NC_060939.1 CM021582.2 99.87 True indel: indel (<= 5bp) 16023051 16028376 16149174 16154499 NC_060939.1 CM021582.2 98.76 True indel: indel (<= 5bp) 16028514 16270873 16154638 16396982 NC_060939.1 CM021582.2 99.89 True relocation, inconsistency = 231460 16502334 16503867 16396983 16398516 NC_060939.1 CM021582.2 99.94 True relocation, inconsistency = -245121 16258747 16685269 16398517 16825172 NC_060939.1 CM021582.2 99.36 True relocation, inconsistency = 7647 16692917 16694214 16825173 16826470 NC_060939.1 CM021582.2 99.61 True local misassembly 16690475 16697781 16826471 16833776 NC_060939.1 CM021582.2 99.03 True local misassembly 16694302 16696061 16834034 16835793 NC_060939.1 CM021582.2 97.79 True fake: not a misassembly (possible transposable element) 16704069 16708424 16835794 16840150 NC_060939.1 CM021582.2 98.05 True fake: not a misassembly (possible transposable element) 16698658 16721692 16840274 16863308 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 717473 17439166 17445005 16863309 16869148 NC_060939.1 CM021582.2 99.68 True relocation, inconsistency = -695191 16750572 16771173 16869906 16890720 NC_060939.1 CM021582.2 98.23 True relocation, inconsistency = -14457 16756717 16768892 16890721 16902917 NC_060939.1 CM021582.2 99.16 True relocation, inconsistency = -13798 16755095 16756971 16902918 16904794 NC_060939.1 CM021582.2 99.61 True local misassembly 16757394 16762513 16905055 16910174 NC_060939.1 CM021582.2 99.49 True local misassembly 16756203 16764292 16910175 16918285 NC_060939.1 CM021582.2 99.49 True relocation, inconsistency = 844510 17608904 17611460 16918387 16920943 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = -863422 16748039 16764292 16920944 16937218 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = 25181 16789474 16797338 16937219 16945104 NC_060939.1 CM021582.2 99.29 True fake: not a misassembly (possible transposable element) 16749514 16752472 16945105 16948063 NC_060939.1 CM021582.2 99.86 True fake: not a misassembly (possible transposable element) 16800298 16811112 16948064 16958878 NC_060939.1 CM021582.2 99.7 True relocation, inconsistency = 104094 16915381 16916064 16959053 16959736 NC_060939.1 CM021582.2 99.67 True relocation, inconsistency = 497922 17413987 17420979 16959737 16966729 NC_060939.1 CM021582.2 99.51 True local misassembly 17425656 17429267 16966730 16970341 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 68514 17497782 17512312 16970342 16984889 NC_060939.1 CM021582.2 99.35 True relocation, inconsistency = -109926 17403441 17410171 16985944 16992674 NC_060939.1 CM021582.2 99.64 True relocation, inconsistency = 87610 17497782 17513672 16992675 17008582 NC_060939.1 CM021582.2 99.13 True relocation, inconsistency = -731520 16782153 16789473 17008583 17015924 NC_060939.1 CM021582.2 98.97 True relocation, inconsistency = 658089 17447664 17470672 17016026 17039029 NC_060939.1 CM021582.2 99.65 True relocation, inconsistency = -33237 17437436 17473128 17039030 17074716 NC_060939.1 CM021582.2 99.59 True relocation, inconsistency = -533720 16939625 16949892 17074933 17085200 NC_060939.1 CM021582.2 99.79 True relocation, inconsistency = -117380 16832513 16841077 17085201 17093765 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 342768 17183858 17190665 17093778 17100590 NC_060939.1 CM021582.2 99.56 True relocation, inconsistency = -376314 16816302 16817080 17102541 17103319 NC_060939.1 CM021582.2 99.8 True relocation, inconsistency = 8359 16825440 16838541 17103320 17116421 NC_060939.1 CM021582.2 99.77 True local misassembly 16835151 16842282 17116422 17123553 NC_060939.1 CM021582.2 99.85 True relocation, inconsistency = 48725 16891008 16904362 17123554 17136908 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 517181 17421544 17428636 17136909 17144172 NC_060939.1 CM021582.2 97.16 True relocation, inconsistency = -623840 16804805 16816226 17144181 17155602 NC_060939.1 CM021582.2 99.77 True fake: not a misassembly (possible transposable element) 16735232 16737399 17163999 17166166 NC_060939.1 CM021582.2 99.12 True fake: not a misassembly (possible transposable element) 16830036 16838232 17166167 17174363 NC_060939.1 CM021582.2 99.79 True local misassembly 16834842 16842282 17174364 17181804 NC_060939.1 CM021582.2 99.84 True relocation, inconsistency = 48725 16891008 16904362 17181805 17195159 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 597120 17501483 17511126 17195160 17205151 NC_060939.1 CM021582.2 95.97 True relocation, inconsistency = 7829 17518956 17523308 17205152 17209504 NC_060939.1 CM021582.2 99.58 True relocation, inconsistency = -691476 16831922 16844665 17209594 17222337 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = 48725 16893391 16899269 17222338 17228216 NC_060939.1 CM021582.2 99.71 True relocation, inconsistency = 514624 17413987 17421015 17228310 17235338 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = -604064 16816952 16818999 17235339 17237386 NC_060939.1 CM021582.2 97.39 True local misassembly 16814395 16822874 17237387 17245866 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = 674793 17497668 17498946 17245867 17247145 NC_060939.1 CM021582.2 99.65 True relocation, inconsistency = -504730 17005720 17048935 17258649 17301537 NC_060939.1 CM021582.2 99.04 True relocation, inconsistency = -120179 16928850 16933870 17301631 17306651 NC_060939.1 CM021582.2 99.92 True relocation, inconsistency = 561991 17520088 17525958 17330878 17336748 NC_060939.1 CM021582.2 99.76 True relocation, inconsistency = -421368 17104591 17124953 17336749 17357111 NC_060939.1 CM021582.2 99.93 True relocation, inconsistency = -65790 17059257 17066830 17357205 17364782 NC_060939.1 CM021582.2 99.89 True relocation, inconsistency = -43465 17023459 17047985 17364876 17389402 NC_060939.1 CM021582.2 99.91 True relocation, inconsistency = 127158 17175144 17190665 17389403 17404928 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = -7666 17183000 17188286 17404929 17410214 NC_060939.1 CM021582.2 99.6 True relocation, inconsistency = -19775 17168512 17171729 17410215 17413431 NC_060939.1 CM021582.2 99.55 True local misassembly 17174287 17190665 17413432 17429813 NC_060939.1 CM021582.2 99.62 True local misassembly 17188113 17190839 17429814 17432544 NC_060939.1 CM021582.2 99.12 True local misassembly 17191520 17199862 17432545 17440886 NC_060939.1 CM021582.2 99.48 True relocation, inconsistency = 350974 17552722 17559975 17442772 17450025 NC_060939.1 CM021582.2 99.75 True relocation, inconsistency = -360522 17199454 17201747 17450026 17452319 NC_060939.1 CM021582.2 99.78 True relocation, inconsistency = -455492 16746256 16748795 17452320 17454859 NC_060939.1 CM021582.2 99.43 True relocation, inconsistency = 435062 17183858 17192188 17454860 17463195 NC_060939.1 CM021582.2 99.5 True local misassembly 17195426 17197283 17463196 17465053 NC_060939.1 CM021582.2 99.41 True relocation, inconsistency = 355408 17552722 17557659 17465084 17470021 NC_060939.1 CM021582.2 99.75 True relocation, inconsistency = -391201 17166459 17171729 17470022 17475292 NC_060939.1 CM021582.2 99.82 True relocation, inconsistency = 10228 17181958 17192188 17475293 17485528 NC_060939.1 CM021582.2 99.49 True relocation, inconsistency = -17894 17174295 17181494 17485529 17492728 NC_060939.1 CM021582.2 99.85 True local misassembly 17191520 17199862 17496289 17504631 NC_060939.1 CM021582.2 99.48 True relocation, inconsistency = 279902 17481650 17486753 17506517 17511622 NC_060939.1 CM021582.2 99.49 True relocation, inconsistency = -707158 16782605 16787178 17514632 17519205 NC_060939.1 CM021582.2 99.23 True relocation, inconsistency = 429732 17220610 17233524 17522905 17535819 NC_060939.1 CM021582.2 99.84 True indel: stretch of mismatches 17233525 17235726 17535820 17538021 NC_060939.1 CM021582.2 99.14 True relocation, inconsistency = 394468 17649299 17655711 17557126 17563540 NC_060939.1 CM021582.2 98.41 True relocation, inconsistency = -950480 16705877 16708644 17564186 17566953 NC_060939.1 CM021582.2 99.24 True relocation, inconsistency = 457685 17186411 17188958 17587035 17589582 NC_060939.1 CM021582.2 98.86 True relocation, inconsistency = 476245 17677154 17677833 17601533 17602212 NC_060939.1 CM021582.2 98.7 True relocation, inconsistency = -251746 17426088 17431824 17602213 17607949 NC_060939.1 CM021582.2 99.53 True relocation, inconsistency = -125934 17305891 17315817 17607950 17617876 NC_060939.1 CM021582.2 99.65 True relocation, inconsistency = -138270 17177548 17178126 17617877 17618455 NC_060939.1 CM021582.2 99.35 True relocation, inconsistency = 45774 17224178 17227400 17618733 17621955 NC_060939.1 CM021582.2 98.91 True relocation, inconsistency = 35184 17271523 17276528 17630894 17635920 NC_060939.1 CM021582.2 99.44 True relocation, inconsistency = 57629 17340711 17343491 17642474 17645254 NC_060939.1 CM021582.2 100.0 True relocation, inconsistency = 282957 17650066 17651825 17668872 17670631 NC_060939.1 CM021582.2 98.3 True indel: indel (<= 5bp) 17651874 17653803 17670682 17672611 NC_060939.1 CM021582.2 97.88 True local misassembly 17653804 17655826 17672950 17674972 NC_060939.1 CM021582.2 97.58 True relocation, inconsistency = -282739 17376147 17382746 17678032 17684631 NC_060939.1 CM021582.2 99.76 True local misassembly 17383512 17408644 17685397 17710529 NC_060939.1 CM021582.2 99.86 True relocation, inconsistency = 72781 17481650 17493576 17710754 17722684 NC_060939.1 CM021582.2 99.4 True relocation, inconsistency = 131249 17626452 17628139 17724311 17725998 NC_060939.1 CM021582.2 99.26 True relocation, inconsistency = -873814 16754326 16759980 17725999 17731653 NC_060939.1 CM021582.2 99.14 True relocation, inconsistency = 690240 17450221 17457276 17731654 17738709 NC_060939.1 CM021582.2 99.55 True relocation, inconsistency = 207257 17664534 17665992 17738710 17740168 NC_060939.1 CM021582.2 98.44 True local misassembly 17660883 17666540 17740169 17745830 NC_060939.1 CM021582.2 98.25 True relocation, inconsistency = -214244 17462134 17463005 17755668 17756539 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = -7671 17455335 17470571 17756540 17771770 NC_060939.1 CM021582.2 99.63 True relocation, inconsistency = -717166 16761931 16767015 17780296 17785401 NC_060939.1 CM021582.2 98.77 True relocation, inconsistency = 741554 17510382 17522472 17787214 17799317 NC_060939.1 CM021582.2 99.55 True relocation, inconsistency = -24362 17498111 17517938 17799318 17819153 NC_060939.1 CM021582.2 99.57 True relocation, inconsistency = -782923 16735016 16737279 17819154 17821417 NC_060939.1 CM021582.2 99.37 True local misassembly 16737280 16739111 17821927 17823758 NC_060939.1 CM021582.2 99.73 True relocation, inconsistency = 780875 17522645 17530979 17826417 17834751 NC_060939.1 CM021582.2 99.84 True relocation, inconsistency = -796217 16737280 16741089 17837269 17841078 NC_060939.1 CM021582.2 98.92 True relocation, inconsistency = 434340 17175430 17188958 17841079 17854606 NC_060939.1 CM021582.2 99.56 True relocation, inconsistency = -19775 17169184 17177885 17854607 17863306 NC_060939.1 CM021582.2 99.52 True relocation, inconsistency = 384210 17562096 17568735 17863307 17869946 NC_060939.1 CM021582.2 99.69 True local misassembly 17569053 17578350 17870093 17879390 NC_060939.1 CM021582.2 99.82 True local misassembly 17573237 17574880 17879391 17881034 NC_060939.1 CM021582.2 99.85 True relocation, inconsistency = 46190 17634044 17637609 17894008 17897573 NC_060939.1 CM021582.2 99.47 True local misassembly 17643578 17649384 17899108 17904912 NC_060939.1 CM021582.2 99.09 True relocation, inconsistency = 13977 17663362 17680928 17904913 17922483 NC_060939.1 CM021582.2 99.67 True local misassembly 17685866 18005372 17922484 18241374 NC_060939.1 CM021582.2 99.51 True local misassembly 18008130 18008808 18245234 18245912 NC_060939.1 CM021582.2 98.23 True local misassembly 18009313 18009897 18246712 18247296 NC_060939.1 CM021582.2 98.97 True fake: not a misassembly (possible transposable element) 19553535 19555606 18249863 18247792 NC_060939.1 CM021582.2 99.66 True fake: not a misassembly (possible transposable element) 18013033 18013688 18251041 18251696 NC_060939.1 CM021582.2 98.93 True relocation, inconsistency = 1534949 19550254 19551830 18254889 18253313 NC_060939.1 CM021582.2 99.87 True indel: indel (> 5bp) 19547981 19550244 18257153 18254890 NC_060939.1 CM021582.2 99.87 True local misassembly 19543733 19547980 18262795 18258548 NC_060939.1 CM021582.2 99.86 True local misassembly 19542276 19543389 18263909 18262796 NC_060939.1 CM021582.2 99.91 True fake: not a misassembly (possible transposable element) 18009069 18009591 18264732 18265254 NC_060939.1 CM021582.2 98.85 True fake: not a misassembly (possible transposable element) 19297647 19541617 18511029 18265701 NC_060939.1 CM021582.2 98.58 True relocation, inconsistency = 385595 18255324 18910844 18512237 19167748 NC_060939.1 CM021582.2 99.57 True local misassembly 18910507 19285444 19169379 19536889 NC_060939.1 CM021582.2 97.54 True local misassembly 19287893 19288843 19540596 19541546 NC_060939.1 CM021582.2 99.47 True local misassembly 19289862 19290876 19543138 19544195 NC_060939.1 CM021582.2 95.09 True local misassembly 19291420 19292297 19544828 19545705 NC_060939.1 CM021582.2 98.97 True local misassembly 19294057 19295145 19547650 19548738 NC_060939.1 CM021582.2 99.45 True local misassembly 19298477 19539097 19555107 19796802 NC_060939.1 CM021582.2 98.5 True relocation, inconsistency = 1283761 18012561 18014715 19799039 19796803 NC_060939.1 CM021582.2 98.77 True relocation, inconsistency = 1538717 19554362 19555257 19799969 19800864 NC_060939.1 CM021582.2 99.55 True local misassembly 19555983 19556515 19801249 19801781 NC_060939.1 CM021582.2 99.44 True fake: not a misassembly (possible transposable element) 18008078 18008808 19803049 19802319 NC_060939.1 CM021582.2 99.59 True fake: not a misassembly (possible transposable element) 19559175 21063408 19804471 21306590 NC_060939.1 CM021582.2 99.44 True indel: indel (> 5bp) 21063451 21975153 21306591 22218375 NC_060939.1 CM021582.2 99.69 True indel: indel (> 5bp) 21975268 21976752 22218498 22219978 NC_060939.1 CM021582.2 96.84 True indel: indel (> 5bp) 21976830 21981596 22220071 22224835 NC_060939.1 CM021582.2 97.11 True indel: stretch of mismatches 21981644 22288252 22224883 22531545 NC_060939.1 CM021582.2 99.41 True indel: indel (> 5bp) 22288335 23616401 22531622 23858789 NC_060939.1 CM021582.2 99.6 True indel: indel (> 5bp) 23616423 23676178 23858822 23918863 NC_060939.1 CM021582.2 99.19 True indel: indel (> 5bp) 23676275 23739849 23918947 23982444 NC_060939.1 CM021582.2 99.55 True indel: indel (> 5bp) 23739959 25048976 23982563 25291296 NC_060939.1 CM021582.2 99.77 True local misassembly 25049087 25513100 25291297 25754857 NC_060939.1 CM021582.2 99.71 True indel: indel (> 5bp) 25513094 26156058 25754911 26397897 NC_060939.1 CM021582.2 99.84 True relocation, inconsistency = 17100 26173159 26909571 26397898 27134236 NC_060939.1 CM021582.2 99.79 True indel: indel (> 5bp) 26909663 27167870 27134366 27392608 NC_060939.1 CM021582.2 99.86 True local misassembly 27171596 27740508 27392609 27961490 NC_060939.1 CM021582.2 99.77 True local misassembly 27741807 28087088 27963405 28308613 NC_060939.1 CM021582.2 99.83 True local misassembly 28087402 28612573 28308614 28833970 NC_060939.1 CM021582.2 99.6 True indel: indel (<= 5bp) 28612578 29304960 28833971 29526261 NC_060939.1 CM021582.2 99.73 True indel: indel (> 5bp) 29305014 30574334 29526309 30796245 NC_060939.1 CM021582.2 99.65 True indel: indel (> 5bp) 30574474 31590811 30796422 31812603 NC_060939.1 CM021582.2 99.83 True indel: indel (> 5bp) 31590867 31781319 31812707 32001990 NC_060939.1 CM021582.2 99.28 True indel: indel (<= 5bp) 31781439 33772906 32002108 33991346 NC_060939.1 CM021582.2 99.72 True indel: stretch of mismatches 33772930 47894194 33991370 48114377 NC_060939.1 CM021582.2 99.82 True local misassembly 47894802 53237074 48114986 53457964 NC_060939.1 CM021582.2 99.76 True indel: indel (> 5bp) 53237235 56085062 53458135 56306835 NC_060939.1 CM021582.2 99.74 True indel: indel (> 5bp) 56085189 57340986 56306933 57562268 NC_060939.1 CM021582.2 99.76 True local misassembly 57341413 58151900 57562487 58373074 NC_060939.1 CM021582.2 99.73 True local misassembly 58152462 61981147 58373078 62201298 NC_060939.1 CM021582.2 99.77 True local misassembly 61983819 66220110 62201299 66435946 NC_060939.1 CM021582.2 99.85 True indel: indel (> 5bp) 66220419 71478369 66436227 71697373 NC_060939.1 CM021582.2 99.74 True indel: indel (> 5bp) 71478466 73123194 71697424 73341998 NC_060939.1 CM021582.2 99.85 True relocation, inconsistency = 24284 73147479 74897383 73341999 75091807 NC_060939.1 CM021582.2 99.95 True local misassembly 74900940 75656724 75100987 75856913 NC_060939.1 CM021582.2 99.91 True indel: indel (<= 5bp) 75656802 77301115 75856986 77501268 NC_060939.1 CM021582.2 99.69 True local misassembly 77302583 80305647 77502773 80504759 NC_060939.1 CM021582.2 99.75 True relocation, inconsistency = 1879719 82191156 82257168 80570685 80504760 NC_060939.1 CM021582.2 97.68 True relocation, inconsistency = 1443932 80293201 80747212 80570686 81025044 NC_060939.1 CM021582.2 99.4 True local misassembly 80753264 81769867 81025045 82040498 NC_060939.1 CM021582.2 99.13 True indel: indel (> 5bp) 81769946 82048984 82040532 82319349 NC_060939.1 CM021582.2 99.59 True local misassembly 82050753 82360118 82321076 82630070 NC_060939.1 CM021582.2 99.49 True translocation 129949847 129950728 82630087 82630968 NC_060932.1 CM021582.2 99.66 True local misassembly 129951548 129952674 82631360 82632486 NC_060932.1 CM021582.2 99.47 True translocation 82360101 84679856 82632495 84962095 NC_060939.1 CM021582.2 99.29 True indel: indel (> 5bp) 84679928 84789789 84962141 85071896 NC_060939.1 CM021582.2 99.67 True local misassembly 84789805 89718728 85072040 90003052 NC_060939.1 CM021582.2 99.75 True indel: indel (> 5bp) 89719079 90058505 90003342 90342569 NC_060939.1 CM021582.2 99.78 True indel: indel (<= 5bp) 90058605 90393573 90342665 90677665 NC_060939.1 CM021582.2 99.79 True indel: indel (> 5bp) 90393784 92006127 90677836 92289856 NC_060939.1 CM021582.2 99.7 True indel: indel (> 5bp) 92006480 94200163 92290145 94483604 NC_060939.1 CM021582.2 99.8 True indel: indel (<= 5bp) 94200216 95421523 94483655 95704475 NC_060939.1 CM021582.2 99.82 True local misassembly 95423217 97767403 95705812 98058549 NC_060939.1 CM021582.2 99.21 True indel: indel (> 5bp) 97767482 97814540 98058653 98105851 NC_060939.1 CM021582.2 99.45 True local misassembly 97814614 99298624 98106396 99598381 NC_060939.1 CM021582.2 99.06 True local misassembly 99300460 99750303 99600457 100060304 NC_060939.1 CM021582.2 97.51 True indel: indel (> 5bp) 99750688 99753174 100060720 100063207 NC_060939.1 CM021582.2 98.01 True CONTIG CM021582.2 100063229 misassembled 1 1679 1 1673 NC_060940.1 CM021583.2 99.17 True local misassembly 2250 157328 2239 157990 NC_060940.1 CM021583.2 99.38 True local misassembly 157615 393789 158109 393977 NC_060940.1 CM021583.2 99.58 True indel: indel (> 5bp) 393798 852660 394003 853314 NC_060940.1 CM021583.2 98.13 True local misassembly 853033 853546 854300 854812 NC_060940.1 CM021583.2 97.86 True local misassembly 853874 864674 856020 867047 NC_060940.1 CM021583.2 97.67 True local misassembly 865829 866352 868114 868637 NC_060940.1 CM021583.2 98.28 True local misassembly 867992 1036509 869416 1040406 NC_060940.1 CM021583.2 96.56 True local misassembly 1036745 1198508 1041458 1203793 NC_060940.1 CM021583.2 98.83 True local misassembly 1199740 2815703 1204846 2817395 NC_060940.1 CM021583.2 99.38 True indel: indel (> 5bp) 2815828 4372180 2817526 4374000 NC_060940.1 CM021583.2 99.71 True local misassembly 4372217 8595446 4374127 8595611 NC_060940.1 CM021583.2 99.64 True indel: indel (> 5bp) 8595456 11331374 8595689 11330724 NC_060940.1 CM021583.2 99.74 True local misassembly 11331505 14027661 11330754 14026301 NC_060940.1 CM021583.2 99.72 True local misassembly 14027805 14763565 14026354 14761464 NC_060940.1 CM021583.2 99.74 True indel: indel (> 5bp) 14763554 15116748 14761510 15114599 NC_060940.1 CM021583.2 99.66 True fake: not a misassembly (possible transposable element) 15116749 15117425 15115277 15114601 NC_060940.1 CM021583.2 99.7 True fake: not a misassembly (possible transposable element) 15117440 15368614 15115382 15366023 NC_060940.1 CM021583.2 99.37 True indel: indel (> 5bp) 15368582 16451796 15366048 16448794 NC_060940.1 CM021583.2 99.82 True indel: indel (> 5bp) 16451875 17875379 16448897 17872370 NC_060940.1 CM021583.2 99.81 True local misassembly 17875702 18248793 17872604 18245717 NC_060940.1 CM021583.2 99.61 True indel: indel (> 5bp) 18248947 18351345 18245851 18348504 NC_060940.1 CM021583.2 99.21 True indel: indel (> 5bp) 18351694 20122380 18348826 20119398 NC_060940.1 CM021583.2 99.76 True indel: indel (> 5bp) 20122477 23096439 20119467 23093538 NC_060940.1 CM021583.2 99.88 True local misassembly 23097175 23494083 23093951 23493200 NC_060940.1 CM021583.2 99.12 True indel: indel (> 5bp) 23494230 26999210 23493303 27006240 NC_060940.1 CM021583.2 99.44 True indel: indel (> 5bp) 26999348 27090386 27006330 27097088 NC_060940.1 CM021583.2 99.3 True local misassembly 27090724 27415664 27097220 27422166 NC_060940.1 CM021583.2 99.73 True local misassembly 27417944 28638398 27422550 28642643 NC_060940.1 CM021583.2 99.83 True relocation, inconsistency = 305228 28943627 28980384 28679533 28642644 NC_060940.1 CM021583.2 98.86 True indel: indel (> 5bp) 28788102 28943268 28834978 28679864 NC_060940.1 CM021583.2 99.54 True indel: indel (> 5bp) 28752508 28788015 28870590 28835071 NC_060940.1 CM021583.2 99.07 True relocation, inconsistency = 135821 28923837 29132849 28870591 29079691 NC_060940.1 CM021583.2 99.19 True local misassembly 29133255 30509697 29080258 30455325 NC_060940.1 CM021583.2 99.73 True indel: indel (> 5bp) 30509788 32678762 30455428 32624474 NC_060940.1 CM021583.2 99.82 True local misassembly 32679633 32680521 32625618 32626506 NC_060940.1 CM021583.2 98.99 True local misassembly 32683434 32684727 32629813 32631106 NC_060940.1 CM021583.2 99.92 True indel: indel (> 5bp) 32684737 32686190 32631107 32632560 NC_060940.1 CM021583.2 100.0 True indel: indel (> 5bp) 32686200 32689747 32632561 32636108 NC_060940.1 CM021583.2 99.97 True local misassembly 32689748 32691074 32637197 32638523 NC_060940.1 CM021583.2 99.7 True indel: indel (> 5bp) 32691075 32692868 32638541 32640334 NC_060940.1 CM021583.2 99.94 True indel: indel (> 5bp) 32692869 32695318 32640344 32642793 NC_060940.1 CM021583.2 99.92 True indel: indel (> 5bp) 32695336 32696143 32642794 32643601 NC_060940.1 CM021583.2 100.0 True local misassembly 32702084 33004988 32647451 32950324 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = 1374731 34441282 34442789 32951832 32950325 NC_060940.1 CM021583.2 99.03 True relocation, inconsistency = 792007 33004953 33649274 32951833 33596245 NC_060940.1 CM021583.2 99.93 True local misassembly 33651764 35777520 33599121 35723976 NC_060940.1 CM021583.2 99.92 True local misassembly 35780583 35781553 35727027 35727997 NC_060940.1 CM021583.2 99.69 True local misassembly 35788497 35789426 35734933 35735861 NC_060940.1 CM021583.2 99.14 True indel: indel (<= 5bp) 35789800 35880026 35736234 35826127 NC_060940.1 CM021583.2 99.4 True local misassembly 35880203 35887216 35826647 35833663 NC_060940.1 CM021583.2 99.79 True local misassembly 35888867 35950698 35835313 35897141 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 35950789 35980128 35897232 35926572 NC_060940.1 CM021583.2 99.76 True indel: stretch of mismatches 35980129 36000528 35926573 35946972 NC_060940.1 CM021583.2 99.76 True indel: stretch of mismatches 36000529 36039839 35946973 35986272 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = 13566 36053406 36064935 35986273 35997809 NC_060940.1 CM021583.2 99.32 True local misassembly 36063242 36095346 35997810 36029915 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 7797 36103144 36119217 36029916 36045989 NC_060940.1 CM021583.2 99.69 True fake: not a misassembly (possible transposable element) 36107336 36109105 36045990 36047764 NC_060940.1 CM021583.2 98.74 True fake: not a misassembly (possible transposable element) 36121305 36122660 36048079 36049434 NC_060940.1 CM021583.2 99.93 True local misassembly 36122661 36138261 36051132 36066732 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 26491 36164753 36170441 36066733 36072421 NC_060940.1 CM021583.2 99.32 True relocation, inconsistency = -34982 36135460 36145388 36072422 36082351 NC_060940.1 CM021583.2 99.54 True local misassembly 36143691 36184956 36082352 36121922 NC_060940.1 CM021583.2 95.69 True relocation, inconsistency = 23780 36208737 36218133 36121923 36131319 NC_060940.1 CM021583.2 99.57 True local misassembly 36211338 36237721 36131320 36157707 NC_060940.1 CM021583.2 99.8 True local misassembly 36232625 36235996 36157708 36161079 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = 13588 36249585 36261652 36161080 36173145 NC_060940.1 CM021583.2 99.5 True relocation, inconsistency = 41424 36303077 36324036 36173146 36194442 NC_060940.1 CM021583.2 97.8 True relocation, inconsistency = -61457 36262580 36276587 36194443 36208446 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -21051 36255537 36274558 36208447 36227808 NC_060940.1 CM021583.2 97.91 True relocation, inconsistency = 28520 36303079 36324365 36227809 36248755 NC_060940.1 CM021583.2 97.81 True local misassembly 36331156 36335722 36248756 36253320 NC_060940.1 CM021583.2 99.78 True local misassembly 36337420 36368445 36253321 36284348 NC_060940.1 CM021583.2 99.81 True local misassembly 36366751 36381074 36284349 36298672 NC_060940.1 CM021583.2 99.88 True local misassembly 36388288 36392283 36305886 36309881 NC_060940.1 CM021583.2 99.98 True local misassembly 36397381 36411057 36309882 36323558 NC_060940.1 CM021583.2 99.93 True local misassembly 36409699 36411435 36323559 36325295 NC_060940.1 CM021583.2 99.81 True local misassembly 36409737 36413422 36325296 36328981 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = 308051 36721474 36732711 36328982 36340219 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = -675140 36062254 36066393 36344902 36349054 NC_060940.1 CM021583.2 99.04 True relocation, inconsistency = 356568 36423492 36427357 36349585 36353450 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = 7134 36434492 36461468 36353451 36380087 NC_060940.1 CM021583.2 98.58 True indel: stretch of mismatches 36461469 36485252 36380088 36403862 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 36485253 36491437 36403863 36410047 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 1099413 37595506 37604360 36414703 36423556 NC_060940.1 CM021583.2 98.9 True relocation, inconsistency = -1344664 36259697 36262577 36423557 36426441 NC_060940.1 CM021583.2 98.74 True relocation, inconsistency = 63155 36327525 36328588 36428234 36429299 NC_060940.1 CM021583.2 99.27 True relocation, inconsistency = 182105 36510694 36526337 36429300 36444943 NC_060940.1 CM021583.2 99.92 True indel: stretch of mismatches 36526338 36539620 36444944 36458226 NC_060940.1 CM021583.2 99.96 True relocation, inconsistency = -22087 36517534 36522058 36458227 36462751 NC_060940.1 CM021583.2 99.84 True local misassembly 36527145 36530502 36467838 36471195 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -246291 36284212 36287607 36471196 36474593 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = 273477 36561085 36566181 36474594 36479690 NC_060940.1 CM021583.2 99.87 True local misassembly 36561085 36580237 36479691 36498843 NC_060940.1 CM021583.2 99.96 True indel: stretch of mismatches 36580238 36586527 36498844 36505133 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = -25485 36561085 36576080 36505176 36520171 NC_060940.1 CM021583.2 99.95 True indel: stretch of mismatches 36576081 36578114 36520172 36522205 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = 10194 36588309 36602724 36522206 36536621 NC_060940.1 CM021583.2 99.93 True local misassembly 36599327 36618193 36536622 36555488 NC_060940.1 CM021583.2 99.91 True local misassembly 36621592 36624720 36555489 36558618 NC_060940.1 CM021583.2 99.89 True relocation, inconsistency = -11552 36613169 36639703 36558619 36585153 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 36639704 36719774 36585154 36665239 NC_060940.1 CM021583.2 99.87 True indel: stretch of mismatches 36719775 36817076 36665240 36762544 NC_060940.1 CM021583.2 99.94 True local misassembly 36813679 36819881 36762545 36768747 NC_060940.1 CM021583.2 99.84 True local misassembly 36824979 36834646 36768748 36778415 NC_060940.1 CM021583.2 99.87 True local misassembly 36832948 36849122 36778416 36794590 NC_060940.1 CM021583.2 99.74 True local misassembly 36847428 36865343 36794591 36812510 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = 16265 36881609 36910406 36812511 36841310 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 42127 36952534 36956157 36841311 36844934 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = -40768 36915390 36942190 36844935 36871731 NC_060940.1 CM021583.2 99.65 True relocation, inconsistency = 37026 36979217 37011300 36871732 36903817 NC_060940.1 CM021583.2 99.85 True local misassembly 37016398 37029310 36903818 36916730 NC_060940.1 CM021583.2 99.89 True local misassembly 37028236 37031563 36917015 36920342 NC_060940.1 CM021583.2 99.82 True indel: stretch of mismatches 37031564 37053220 36920343 36941999 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = 12911 37066132 37067393 36942000 36943261 NC_060940.1 CM021583.2 99.7 True indel: stretch of mismatches 37067394 37076020 36943262 36951888 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = 14271 37090292 37101758 36951889 36963355 NC_060940.1 CM021583.2 99.97 True fake: not a misassembly (possible transposable element) 37113992 37119284 36963356 36968648 NC_060940.1 CM021583.2 99.56 True fake: not a misassembly (possible transposable element) 37110790 37118679 36968649 36976538 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = -13592 37105088 37110692 36976539 36982143 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -10194 37103994 37109960 36985639 36991605 NC_060940.1 CM021583.2 99.92 True indel: stretch of mismatches 37109961 37120982 36991606 37002627 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = -18689 37102294 37109960 37002628 37010294 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 37109961 37129045 37010295 37029379 NC_060940.1 CM021583.2 99.96 True local misassembly 37133652 37147734 37030588 37044670 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 37147735 37155732 37044671 37052668 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 37155793 37176223 37052729 37073159 NC_060940.1 CM021583.2 99.91 True relocation, inconsistency = -11893 37164331 37166636 37073160 37075465 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = 422631 37589268 37606524 37075466 37092722 NC_060940.1 CM021583.2 99.75 True indel: stretch of mismatches 37606525 37607030 37092723 37093228 NC_060940.1 CM021583.2 99.56 True relocation, inconsistency = -1544648 36062383 36069788 37093229 37100649 NC_060940.1 CM021583.2 99.0 True relocation, inconsistency = 1159416 37229205 37234739 37100650 37106184 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = -33979 37223935 37225633 37129359 37131057 NC_060940.1 CM021583.2 99.83 True local misassembly 37223935 37234739 37131058 37141861 NC_060940.1 CM021583.2 99.69 True fake: not a misassembly (possible transposable element) 37309829 37311515 37141862 37143548 NC_060940.1 CM021583.2 99.84 True fake: not a misassembly (possible transposable element) 37232010 37251150 37143549 37162689 NC_060940.1 CM021583.2 99.91 True local misassembly 37252850 37254515 37162690 37164355 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = -50967 37203549 37212815 37164356 37173624 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = -69317 37152395 37157416 37182521 37187542 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = 120286 37278598 37284335 37188438 37194175 NC_060940.1 CM021583.2 99.85 True local misassembly 37279582 37289430 37194176 37204024 NC_060940.1 CM021583.2 99.81 True local misassembly 37293847 37306993 37204025 37217171 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 37306994 37326815 37217172 37236993 NC_060940.1 CM021583.2 99.96 True local misassembly 37328515 37354166 37236994 37262646 NC_060940.1 CM021583.2 99.89 True relocation, inconsistency = 8494 37362661 37383823 37262647 37283809 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 37383824 37387154 37283810 37287140 NC_060940.1 CM021583.2 99.92 True indel: stretch of mismatches 37387155 37394598 37287141 37294584 NC_060940.1 CM021583.2 99.74 True fake: not a misassembly (possible transposable element) 37404342 37407059 37296175 37298892 NC_060940.1 CM021583.2 99.61 True fake: not a misassembly (possible transposable element) 37397208 37413962 37298893 37315647 NC_060940.1 CM021583.2 99.71 True local misassembly 37408868 37417358 37315648 37324138 NC_060940.1 CM021583.2 99.47 True relocation, inconsistency = -11887 37405587 37428026 37324254 37346693 NC_060940.1 CM021583.2 98.48 True relocation, inconsistency = -8494 37419533 37453651 37346694 37380812 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = -14609 37439043 37444789 37380813 37386559 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = 11891 37456681 37472073 37386560 37401952 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 10872 37483158 37498625 37402165 37417632 NC_060940.1 CM021583.2 99.91 True local misassembly 37502703 37531002 37417633 37445932 NC_060940.1 CM021583.2 99.92 True local misassembly 37532362 37542199 37445933 37455770 NC_060940.1 CM021583.2 99.79 True local misassembly 37549044 37557665 37455824 37464445 NC_060940.1 CM021583.2 99.85 True indel: indel (<= 5bp) 37557667 37563536 37464446 37470315 NC_060940.1 CM021583.2 99.97 True local misassembly 37563537 37581361 37473034 37490858 NC_060940.1 CM021583.2 99.92 True fake: not a misassembly (possible transposable element) 37419675 37422590 37490859 37493775 NC_060940.1 CM021583.2 99.35 True fake: not a misassembly (possible transposable element) 37588015 37600612 37493776 37506374 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = -70311 37530302 37530952 37506375 37507025 NC_060940.1 CM021583.2 99.48 True relocation, inconsistency = -112779 37418174 37422590 37507026 37511442 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = 165424 37588015 37614311 37511443 37537739 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = 13589 37627901 37640936 37537740 37550777 NC_060940.1 CM021583.2 99.81 True indel: stretch of mismatches 37641000 37652884 37550841 37562729 NC_060940.1 CM021583.2 99.81 True local misassembly 37654584 37669943 37562730 37578090 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 11886 37681830 37726293 37578091 37622552 NC_060940.1 CM021583.2 99.67 True local misassembly 37729691 37742026 37622553 37634888 NC_060940.1 CM021583.2 99.75 True indel: stretch of mismatches 37742027 37745803 37634889 37638665 NC_060940.1 CM021583.2 99.62 True indel: stretch of mismatches 37745804 37761674 37638666 37654536 NC_060940.1 CM021583.2 99.89 True local misassembly 37760656 37778269 37654537 37672149 NC_060940.1 CM021583.2 99.88 True local misassembly 37779968 37782674 37672150 37674856 NC_060940.1 CM021583.2 99.42 True local misassembly 37777240 37789123 37674857 37686740 NC_060940.1 CM021583.2 99.9 True local misassembly 37786746 37844563 37686741 37743876 NC_060940.1 CM021583.2 96.37 True local misassembly 37842521 37843085 37743877 37744441 NC_060940.1 CM021583.2 98.57 True local misassembly 37844987 37846464 37744640 37746117 NC_060940.1 CM021583.2 98.24 True local misassembly 37841228 39221081 37746330 39126186 NC_060940.1 CM021583.2 99.97 True local misassembly 39221076 39510709 39127346 39416980 NC_060940.1 CM021583.2 99.96 True local misassembly 39517026 39558071 39416981 39458000 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -10982 39547090 39548207 39459117 39458001 NC_060940.1 CM021583.2 97.61 True relocation, inconsistency = 451487 40001218 40003926 39460641 39463329 NC_060940.1 CM021583.2 97.67 True relocation, inconsistency = 9272597 49278082 49282857 39464888 39469688 NC_060940.1 CM021583.2 98.71 True relocation, inconsistency = -8558459 40724485 40726726 39469775 39472016 NC_060940.1 CM021583.2 99.11 True local misassembly 40727068 40733295 39472860 39479087 NC_060940.1 CM021583.2 98.52 True relocation, inconsistency = 8292668 49025992 49027339 39479116 39480453 NC_060940.1 CM021583.2 97.85 True relocation, inconsistency = -547325 48480016 48483043 39480455 39483482 NC_060940.1 CM021583.2 99.34 True relocation, inconsistency = 1830170 50313218 50318745 39483487 39489015 NC_060940.1 CM021583.2 99.22 True relocation, inconsistency = -7890377 42428369 42435697 39489016 39496200 NC_060940.1 CM021583.2 97.09 True relocation, inconsistency = 6502808 48938506 48945077 39496201 39502772 NC_060940.1 CM021583.2 98.78 True relocation, inconsistency = -8487165 40457913 40468118 39502773 39512949 NC_060940.1 CM021583.2 96.24 True relocation, inconsistency = 8501454 48969573 48982760 39512950 39526119 NC_060940.1 CM021583.2 99.18 True relocation, inconsistency = -8507735 40475134 40479544 39526228 39530638 NC_060940.1 CM021583.2 98.69 True relocation, inconsistency = 9914132 50393677 50396629 39530639 39533607 NC_060940.1 CM021583.2 98.07 True relocation, inconsistency = -30021 50366955 50371784 39533954 39538783 NC_060940.1 CM021583.2 99.25 True relocation, inconsistency = -10795980 39575805 39611549 39538784 39574552 NC_060940.1 CM021583.2 99.68 True fake: not a misassembly (possible transposable element) 39677948 39682199 39574553 39578804 NC_060940.1 CM021583.2 99.78 True fake: not a misassembly (possible transposable element) 39615802 39625897 39578805 39588899 NC_060940.1 CM021583.2 99.56 True indel: stretch of mismatches 39625898 39673111 39588900 39636172 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = -66398 39606714 39620811 39636173 39650270 NC_060940.1 CM021583.2 99.72 True local misassembly 39614700 39615801 39650271 39651372 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = 66398 39682200 39693366 39651373 39662539 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = 12632 39705999 39767904 39662540 39724158 NC_060940.1 CM021583.2 99.15 True relocation, inconsistency = 292959 40060864 40065784 39724159 39729079 NC_060940.1 CM021583.2 99.56 True indel: indel (> 5bp) 40066063 40075622 39729383 39738942 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = 11139323 51215362 51220718 39739359 39744735 NC_060940.1 CM021583.2 98.78 True relocation, inconsistency = -11425603 39795116 39802676 39744736 39752273 NC_060940.1 CM021583.2 99.07 True relocation, inconsistency = 11413422 51216099 51220718 39752274 39756913 NC_060940.1 CM021583.2 98.78 True relocation, inconsistency = -11425603 39795116 39808375 39756914 39770174 NC_060940.1 CM021583.2 99.41 True relocation, inconsistency = 10174867 49983243 49993637 39770175 39780568 NC_060940.1 CM021583.2 99.28 True relocation, inconsistency = -1768987 48224651 48227494 39780569 39783412 NC_060940.1 CM021583.2 99.42 True relocation, inconsistency = 1197826 49425321 49428729 39783413 39786821 NC_060940.1 CM021583.2 99.48 True relocation, inconsistency = -9603722 39825008 39901084 39786822 39862936 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 1139057 41040142 41042179 39862937 39864974 NC_060940.1 CM021583.2 98.78 True relocation, inconsistency = 1557158 42599341 42607570 39864978 39873164 NC_060940.1 CM021583.2 98.04 True relocation, inconsistency = -2696095 39912078 39927802 39873767 39889491 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = 10186 39937989 39946253 39889492 39897756 NC_060940.1 CM021583.2 98.62 True relocation, inconsistency = 3248356 43194610 43197406 39897757 39900553 NC_060940.1 CM021583.2 98.94 True relocation, inconsistency = -3258611 39938796 39961498 39900554 39923305 NC_060940.1 CM021583.2 99.47 True indel: stretch of mismatches 39961499 40020912 39923306 39982728 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 13495 40034408 40075181 39982729 40023473 NC_060940.1 CM021583.2 99.66 True relocation, inconsistency = 10201247 50285336 50297539 40032381 40044535 NC_060940.1 CM021583.2 99.19 True relocation, inconsistency = -10201243 40096297 40176758 40044536 40125001 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = 6888956 47065933 47098074 40125220 40157344 NC_060940.1 CM021583.2 99.29 True relocation, inconsistency = -7046162 40051913 40053237 40157345 40158669 NC_060940.1 CM021583.2 98.01 True relocation, inconsistency = 145066 40198304 40226950 40158670 40187293 NC_060940.1 CM021583.2 99.72 True relocation, inconsistency = 8659036 48885987 48889194 40187294 40190501 NC_060940.1 CM021583.2 99.62 True local misassembly 48883083 48901517 40190502 40208936 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = -7855231 41046315 41049040 40208965 40211690 NC_060940.1 CM021583.2 98.62 True relocation, inconsistency = -792343 40256698 40264447 40211691 40219440 NC_060940.1 CM021583.2 99.65 True local misassembly 40258336 40264447 40219441 40225552 NC_060940.1 CM021583.2 99.2 True relocation, inconsistency = -12224 40252272 40258383 40225601 40231689 NC_060940.1 CM021583.2 99.44 True local misassembly 40252272 40254784 40231690 40234202 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = 8629239 48884024 48905448 40234203 40255628 NC_060940.1 CM021583.2 99.71 True fake: not a misassembly (possible transposable element) 40270099 40273921 40255629 40259428 NC_060940.1 CM021583.2 99.3 True fake: not a misassembly (possible transposable element) 48917388 48928594 40261456 40272664 NC_060940.1 CM021583.2 99.8 True indel: stretch of mismatches 48928595 48976357 40272665 40320416 NC_060940.1 CM021583.2 99.59 True fake: not a misassembly (possible transposable element) 40465796 40468060 40320417 40322681 NC_060940.1 CM021583.2 96.53 True fake: not a misassembly (possible transposable element) 48977379 48987238 40322682 40332562 NC_060940.1 CM021583.2 99.26 True relocation, inconsistency = -20160 48967089 48982770 40332573 40347795 NC_060940.1 CM021583.2 96.74 True relocation, inconsistency = -12336 48970435 49006664 40347796 40384128 NC_060940.1 CM021583.2 99.5 True relocation, inconsistency = -18724 48987941 49001673 40384129 40397861 NC_060940.1 CM021583.2 99.79 True relocation, inconsistency = -9390 48992284 49015290 40397862 40421252 NC_060940.1 CM021583.2 97.44 True relocation, inconsistency = -8545724 40469567 40475146 40421253 40426757 NC_060940.1 CM021583.2 98.4 True indel: stretch of mismatches 40475147 40528047 40426758 40479663 NC_060940.1 CM021583.2 99.53 True indel: stretch of mismatches 40528048 40537494 40479664 40489110 NC_060940.1 CM021583.2 99.46 True indel: stretch of mismatches 40537495 40628771 40489111 40580315 NC_060940.1 CM021583.2 99.66 True indel: stretch of mismatches 40628772 40642114 40580316 40593658 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 8532823 49174938 49178433 40593659 40597102 NC_060940.1 CM021583.2 99.25 True relocation, inconsistency = -8532823 40645611 40657937 40597103 40609429 NC_060940.1 CM021583.2 99.9 True relocation, inconsistency = 329343 40987281 41001903 40609430 40624062 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = -329333 40672571 40676868 40624063 40628360 NC_060940.1 CM021583.2 99.97 True local misassembly 40670809 40678630 40628361 40636182 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = 4791377 45470492 45476090 40636667 40642288 NC_060940.1 CM021583.2 99.15 True relocation, inconsistency = 3234591 48710745 48712814 40642352 40644395 NC_060940.1 CM021583.2 99.06 True relocation, inconsistency = -8013881 40698934 40705035 40644396 40650497 NC_060940.1 CM021583.2 98.96 True local misassembly 40698934 40720733 40650498 40672297 NC_060940.1 CM021583.2 99.85 True indel: stretch of mismatches 40720782 40740838 40672346 40692411 NC_060940.1 CM021583.2 98.91 True relocation, inconsistency = 9725673 50466512 50511024 40692412 40736965 NC_060940.1 CM021583.2 99.27 True relocation, inconsistency = -9731765 40779260 40791358 40736966 40749054 NC_060940.1 CM021583.2 99.37 True relocation, inconsistency = 8303807 49095554 49137481 40749443 40791366 NC_060940.1 CM021583.2 99.77 True local misassembly 49131094 49135724 40791367 40795997 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = -38328 49097397 49137481 40795998 40836082 NC_060940.1 CM021583.2 99.77 True local misassembly 49131094 49133316 40836083 40838305 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = -8199518 40933799 40986919 40838306 40891302 NC_060940.1 CM021583.2 99.57 True indel: stretch of mismatches 40986920 41007834 40891303 40912217 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 41007835 41012365 40912218 40916748 NC_060940.1 CM021583.2 99.95 True local misassembly 41006254 41012365 40916749 40922860 NC_060940.1 CM021583.2 99.9 True local misassembly 41018478 41073886 40922861 40978253 NC_060940.1 CM021583.2 99.9 True relocation, inconsistency = 7671336 48745223 48750904 40978254 40983934 NC_060940.1 CM021583.2 97.38 True relocation, inconsistency = -7653460 41097604 41116384 40984094 41002842 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = 5810872 46927257 46932596 41002843 41008182 NC_060940.1 CM021583.2 99.17 True relocation, inconsistency = 900251 47832848 47847304 41008183 41022666 NC_060940.1 CM021583.2 99.42 True relocation, inconsistency = 610031 48457336 48461598 41022667 41026916 NC_060940.1 CM021583.2 98.44 True relocation, inconsistency = -7321131 41140468 41156816 41026917 41043167 NC_060940.1 CM021583.2 99.13 True indel: stretch of mismatches 41156893 41233697 41043244 41120121 NC_060940.1 CM021583.2 99.69 True local misassembly 41246976 41361789 41133400 41248232 NC_060940.1 CM021583.2 99.89 True local misassembly 41355679 41357703 41248233 41250257 NC_060940.1 CM021583.2 99.55 True local misassembly 41358801 41364450 41251356 41257005 NC_060940.1 CM021583.2 99.5 True fake: not a misassembly (possible transposable element) 44671535 44675622 41257006 41261093 NC_060940.1 CM021583.2 99.87 True fake: not a misassembly (possible transposable element) 41374651 41502349 41261094 41388823 NC_060940.1 CM021583.2 99.9 True indel: indel (> 5bp) 41502676 41522191 41389144 41408680 NC_060940.1 CM021583.2 98.97 True relocation, inconsistency = 1570620 43092812 43098448 41408681 41414454 NC_060940.1 CM021583.2 97.89 True relocation, inconsistency = -1262333 41836116 41854406 41414455 41432839 NC_060940.1 CM021583.2 98.03 True relocation, inconsistency = -1721786 40132979 40151407 41433198 41451800 NC_060940.1 CM021583.2 98.86 True relocation, inconsistency = 9132845 49284253 49324370 41451801 41491892 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = -6109653 43214718 43218462 41491893 41495637 NC_060940.1 CM021583.2 99.35 True relocation, inconsistency = -1686591 41531872 41537580 41495638 41501346 NC_060940.1 CM021583.2 99.64 True relocation, inconsistency = 1757115 43294696 43308064 41501347 41514692 NC_060940.1 CM021583.2 99.63 True relocation, inconsistency = 4259319 47567384 47573495 41514693 41520804 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = 791503 48366710 48372290 41522516 41528096 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = -822063 47550759 47554033 41528628 41531902 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = -5298087 42255947 42262550 41531903 41538506 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 3891078 46153629 46178531 41538507 41563298 NC_060940.1 CM021583.2 99.39 True relocation, inconsistency = 623931 46802463 46806529 41563299 41567388 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = -2781697 44024833 44032668 41567389 41575224 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = -596350 43436319 43467801 41575225 41606690 NC_060940.1 CM021583.2 99.4 True relocation, inconsistency = 615098 44082900 44095708 41606691 41619500 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 741001 44838477 44839421 41621268 41622212 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = -2329842 42509580 42525411 41622213 41638044 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = 4422371 46947928 46962811 41638190 41653073 NC_060940.1 CM021583.2 99.33 True relocation, inconsistency = -2077320 44885492 44972637 41653074 41740211 NC_060940.1 CM021583.2 99.23 True relocation, inconsistency = -2056446 42916192 42918754 41740212 41742857 NC_060940.1 CM021583.2 98.55 True relocation, inconsistency = -974450 41944305 41949929 41742858 41748481 NC_060940.1 CM021583.2 99.35 True local misassembly 41951992 41989152 41748482 41785691 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = 636416 42625569 42691868 41785692 41851966 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 5326161 48018030 48032193 41851967 41866130 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = -4944593 43087601 43088529 41866131 41867059 NC_060940.1 CM021583.2 98.64 True relocation, inconsistency = 5071603 48160133 48166440 41867060 41873367 NC_060940.1 CM021583.2 98.48 True relocation, inconsistency = -150142 48016299 48036232 41873368 41893324 NC_060940.1 CM021583.2 99.7 True relocation, inconsistency = -5980269 42055964 42086330 41893325 41923311 NC_060940.1 CM021583.2 98.04 True relocation, inconsistency = 6031404 48117735 48154604 41923312 41960133 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = -5394853 42759752 42770443 41960134 41970995 NC_060940.1 CM021583.2 99.18 True relocation, inconsistency = 1625522 44395966 44434706 41970996 42009736 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = 874579 45309286 45333365 42009737 42033816 NC_060940.1 CM021583.2 99.89 True relocation, inconsistency = -1410747 43922619 43932486 42033817 42043622 NC_060940.1 CM021583.2 99.0 True relocation, inconsistency = -1760559 42171928 42214658 42043623 42086423 NC_060940.1 CM021583.2 99.72 True indel: indel (> 5bp) 42215057 42225600 42086815 42097358 NC_060940.1 CM021583.2 99.92 True indel: stretch of mismatches 42225601 42247709 42097359 42119467 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 8297462 50545172 50547976 42119468 42122200 NC_060940.1 CM021583.2 96.12 True relocation, inconsistency = -8991448 41556529 41562009 42122201 42127681 NC_060940.1 CM021583.2 99.27 True relocation, inconsistency = 10197996 51760006 51762039 42127682 42129716 NC_060940.1 CM021583.2 97.94 True relocation, inconsistency = -9504050 42257990 42320552 42129717 42192279 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = -687738 41632815 41642981 42192280 42202446 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 42407 41685389 41691819 42202447 42208877 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = 645331 42337151 42425609 42208878 42297297 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = -1462454 40963156 40966449 42297298 42300575 NC_060940.1 CM021583.2 98.03 True relocation, inconsistency = 2481496 43447946 43456388 42300576 42309008 NC_060940.1 CM021583.2 99.17 True relocation, inconsistency = -1019159 42437239 42494048 42309018 42365827 NC_060940.1 CM021583.2 99.95 True indel: stretch of mismatches 42494049 42543141 42365828 42414920 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 42543240 42598455 42415019 42470214 NC_060940.1 CM021583.2 99.69 True indel: stretch of mismatches 42598456 42689452 42470215 42561297 NC_060940.1 CM021583.2 99.75 True fake: not a misassembly (possible transposable element) 51960601 51962363 42561298 42563060 NC_060940.1 CM021583.2 99.3 True fake: not a misassembly (possible transposable element) 42691216 42711672 42563061 42583517 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 6306720 49018393 49021994 42583518 42587109 NC_060940.1 CM021583.2 98.01 True relocation, inconsistency = 1141439 50163995 50167837 42587671 42591537 NC_060940.1 CM021583.2 98.84 True relocation, inconsistency = -7448041 42720207 42757117 42591948 42628858 NC_060940.1 CM021583.2 99.97 True relocation, inconsistency = 5400994 48158112 48170411 42628859 42640984 NC_060940.1 CM021583.2 98.37 True relocation, inconsistency = -5401147 42769437 42786477 42641157 42657784 NC_060940.1 CM021583.2 97.5 True fake: not a misassembly (possible transposable element) 45146150 45148484 42657785 42660119 NC_060940.1 CM021583.2 99.69 True fake: not a misassembly (possible transposable element) 42788919 42874631 42660229 42745941 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = 5748540 48623833 48629856 42746603 42752652 NC_060940.1 CM021583.2 98.94 True relocation, inconsistency = -1596357 47033500 47034334 42752653 42753487 NC_060940.1 CM021583.2 98.03 True relocation, inconsistency = -4152111 42882224 43093924 42753488 42965025 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 5924845 49018770 49019569 42965026 42965825 NC_060940.1 CM021583.2 97.92 True relocation, inconsistency = -4483708 44535862 44539867 42965826 42969831 NC_060940.1 CM021583.2 98.98 True relocation, inconsistency = 4690593 49230461 49237302 42969832 42976653 NC_060940.1 CM021583.2 98.47 True relocation, inconsistency = -6131731 43105642 43147777 42976724 43018857 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = 5871523 49019301 49028664 43018858 43028200 NC_060940.1 CM021583.2 98.36 True relocation, inconsistency = -12243 49016422 49026553 43028201 43038190 NC_060940.1 CM021583.2 97.7 True relocation, inconsistency = -4588613 44437941 44453694 43038191 43053934 NC_060940.1 CM021583.2 99.47 True relocation, inconsistency = -1270706 43183246 43193950 43054192 43064896 NC_060940.1 CM021583.2 99.79 True indel: stretch of mismatches 43193951 43220975 43064897 43091908 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -1686591 41534385 41537580 43091909 43095104 NC_060940.1 CM021583.2 99.64 True relocation, inconsistency = 6010322 47547903 47561271 43095105 43108450 NC_060940.1 CM021583.2 99.64 True local misassembly 47567384 47573495 43108451 43114562 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = 791503 48366927 48372290 43116491 43121854 NC_060940.1 CM021583.2 99.79 True local misassembly 48366710 48369984 43122386 43125660 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -6114038 42255947 42262550 43125661 43132264 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 3754505 46017056 46041958 43132265 43157056 NC_060940.1 CM021583.2 99.42 True relocation, inconsistency = -2699730 43342229 43346295 43157057 43161146 NC_060940.1 CM021583.2 98.85 True relocation, inconsistency = 678537 44024833 44032775 43161147 43169089 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = -3581304 40451472 40453696 43169090 43171314 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 2984954 43438651 43468628 43171315 43201276 NC_060940.1 CM021583.2 99.46 True relocation, inconsistency = -1738193 41730436 41742394 43201277 43213258 NC_060940.1 CM021583.2 99.51 True relocation, inconsistency = 3094315 44838477 44839421 43215026 43215970 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = 2108506 46947928 46963759 43215971 43231802 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = -15977 46947928 46962811 43231948 43246831 NC_060940.1 CM021583.2 99.34 True relocation, inconsistency = -2077320 44885492 44972637 43246832 43333969 NC_060940.1 CM021583.2 99.23 True relocation, inconsistency = -2056446 42916192 42918754 43333970 43336615 NC_060940.1 CM021583.2 98.56 True relocation, inconsistency = -974450 41944305 41949929 43336616 43342239 NC_060940.1 CM021583.2 99.35 True local misassembly 41951992 41989152 43342240 43379449 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = 636416 42625569 42691868 43379450 43445724 NC_060940.1 CM021583.2 99.79 True relocation, inconsistency = 5326161 48018030 48021493 43445725 43449188 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = -4944593 43076901 43091455 43449189 43463819 NC_060940.1 CM021583.2 98.62 True relocation, inconsistency = 4996766 48088222 48091524 43463820 43467122 NC_060940.1 CM021583.2 98.34 True relocation, inconsistency = -75226 48016299 48044746 43467123 43495593 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -8362458 39682289 39687849 43495594 43501154 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = 5376412 45064262 45066093 43501155 43502986 NC_060940.1 CM021583.2 99.21 True relocation, inconsistency = -4987492 40078602 40083550 43502987 43507935 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 3596242 43679793 43683873 43507936 43512016 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -1609663 42074211 42079447 43512017 43517253 NC_060940.1 CM021583.2 99.59 True relocation, inconsistency = 6057563 48137011 48176523 43517254 43556756 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = -6050440 42126084 42137806 43556757 43568479 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 5245655 47383462 47407650 43568480 43592667 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = -1909591 45498060 45499556 43592668 43594163 NC_060940.1 CM021583.2 98.84 True relocation, inconsistency = -1593252 43906305 43918957 43594164 43606832 NC_060940.1 CM021583.2 99.61 True indel: stretch of mismatches 43919134 43945872 43607009 43633678 NC_060940.1 CM021583.2 99.46 True indel: stretch of mismatches 43945873 43962300 43633679 43650155 NC_060940.1 CM021583.2 99.68 True indel: stretch of mismatches 43962301 43984723 43650156 43672581 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -3207519 40778084 40778713 43673461 43674090 NC_060940.1 CM021583.2 99.21 True indel: indel (<= 5bp) 40778714 40780050 43674094 43675430 NC_060940.1 CM021583.2 98.5 True local misassembly 40780345 40782816 43675431 43677902 NC_060940.1 CM021583.2 99.23 True indel: indel (> 5bp) 40782817 40783441 43677952 43678576 NC_060940.1 CM021583.2 99.2 True indel: indel (> 5bp) 40783458 40784060 43678577 43679179 NC_060940.1 CM021583.2 98.01 True relocation, inconsistency = -18189 40765975 40770244 43679283 43683565 NC_060940.1 CM021583.2 98.2 True relocation, inconsistency = 3225383 43995628 44014729 43683566 43702667 NC_060940.1 CM021583.2 99.78 True indel: stretch of mismatches 44014730 44026489 43702668 43714427 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = -678537 43347953 43352317 43714428 43718792 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = 4294762 47647080 47657450 43718793 43729163 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -4224799 43432652 43470705 43729164 43767211 NC_060940.1 CM021583.2 99.6 True relocation, inconsistency = -1738216 41732490 41733975 43767212 43768697 NC_060940.1 CM021583.2 99.43 True local misassembly 41727481 41743598 43768698 43784838 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = 2353314 44096913 44099586 43784839 43787512 NC_060940.1 CM021583.2 99.77 True indel: indel (> 5bp) 44099838 44207345 43787787 43895263 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 44207421 44271665 43895339 43959583 NC_060940.1 CM021583.2 99.93 True indel: indel (> 5bp) 44271934 44367838 43959875 44055775 NC_060940.1 CM021583.2 99.81 True fake: not a misassembly (possible transposable element) 39777538 39782524 44056528 44061537 NC_060940.1 CM021583.2 99.44 True fake: not a misassembly (possible transposable element) 44384455 44434706 44072392 44122643 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = 874579 45309286 45335398 44122644 44148756 NC_060940.1 CM021583.2 99.89 True relocation, inconsistency = -880681 44454718 44462047 44148757 44156086 NC_060940.1 CM021583.2 99.84 True indel: indel (<= 5bp) 44462203 44489590 44156239 44183626 NC_060940.1 CM021583.2 99.91 True indel: indel (> 5bp) 44489984 44536642 44183971 44230580 NC_060940.1 CM021583.2 99.62 True indel: stretch of mismatches 44536643 44624461 44230581 44318377 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = 1472122 46096584 46102509 44318378 44324303 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -3839511 42263335 42284555 44324640 44345909 NC_060940.1 CM021583.2 99.68 True relocation, inconsistency = 2367438 44651994 44657195 44345910 44351111 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = -2367438 42289758 42324859 44351112 44386213 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = 1033503 43358363 43363451 44386214 44391302 NC_060940.1 CM021583.2 99.9 True relocation, inconsistency = 8179099 51547213 51552269 44395965 44401021 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = -9116091 42445978 42450854 44410821 44415750 NC_060940.1 CM021583.2 98.3 True relocation, inconsistency = 2270980 44722925 44738710 44416841 44432577 NC_060940.1 CM021583.2 99.33 True local misassembly 44739031 44761696 44432578 44455241 NC_060940.1 CM021583.2 98.4 True relocation, inconsistency = -2387726 42373971 42395421 44455242 44476695 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = 2406849 44802271 44811655 44476696 44486080 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = 4781057 49592713 49608094 44486081 44501475 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -5522290 44085805 44089597 44501476 44505268 NC_060940.1 CM021583.2 99.41 True local misassembly 44083057 44088218 44505269 44510430 NC_060940.1 CM021583.2 99.45 True relocation, inconsistency = -1725152 42363067 42377978 44510431 44525348 NC_060940.1 CM021583.2 98.85 True relocation, inconsistency = -1217675 41160304 41165649 44525349 44530657 NC_060940.1 CM021583.2 97.26 True relocation, inconsistency = 3597307 44762991 44798009 44530692 44565756 NC_060940.1 CM021583.2 99.52 True indel: stretch of mismatches 44798010 44911347 44565757 44679093 NC_060940.1 CM021583.2 99.88 True indel: stretch of mismatches 44911687 45059678 44679433 44827431 NC_060940.1 CM021583.2 99.86 True indel: stretch of mismatches 45059679 45073766 44827432 44841522 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 45073767 45130052 44841523 44897834 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -2359672 42770381 42786873 44897835 44914327 NC_060940.1 CM021583.2 99.25 True relocation, inconsistency = 2359672 45146644 45187181 44914426 44954958 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 45187182 45268349 44954959 45036131 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = 2868913 48137360 48141246 45036229 45040116 NC_060940.1 CM021583.2 98.12 True relocation, inconsistency = 253592 48394839 48404426 45040117 45049655 NC_060940.1 CM021583.2 98.86 True relocation, inconsistency = -2319087 46090635 46091459 45054951 45055775 NC_060940.1 CM021583.2 99.7 True relocation, inconsistency = 1272597 47364057 47411412 45055776 45103131 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = -2076014 45335399 45372701 45103132 45140434 NC_060940.1 CM021583.2 99.79 True indel: stretch of mismatches 45372702 45407048 45140435 45174840 NC_060940.1 CM021583.2 99.68 True indel: indel (<= 5bp) 45407199 45408257 45174988 45176046 NC_060940.1 CM021583.2 98.18 True indel: stretch of mismatches 45408258 45472188 45176047 45239889 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = -615020 44857169 44861803 45239890 45244524 NC_060940.1 CM021583.2 98.95 True relocation, inconsistency = 615020 45476824 45623085 45244525 45390787 NC_060940.1 CM021583.2 99.88 True fake: not a misassembly (possible transposable element) 43084348 43089066 45390788 45395506 NC_060940.1 CM021583.2 99.52 True fake: not a misassembly (possible transposable element) 45627805 45650336 45395507 45418037 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 5100151 50750902 50756881 45418452 45424431 NC_060940.1 CM021583.2 99.48 True relocation, inconsistency = -5100150 45656732 45742533 45424432 45510068 NC_060940.1 CM021583.2 99.14 True indel: stretch of mismatches 45742534 45780460 45510069 45547995 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 2874644 48655105 48656941 45547996 45549832 NC_060940.1 CM021583.2 97.75 True relocation, inconsistency = -3891777 44765165 44769557 45549833 45554196 NC_060940.1 CM021583.2 97.96 True relocation, inconsistency = 404435 45173993 45187181 45554197 45567383 NC_060940.1 CM021583.2 99.6 True relocation, inconsistency = 612702 45799884 45834459 45567384 45601959 NC_060940.1 CM021583.2 99.95 True indel: stretch of mismatches 45834460 45889021 45601960 45656570 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 1377938 47266960 47269241 45656571 45658852 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = -1377938 45891304 45913901 45658853 45681450 NC_060940.1 CM021583.2 99.85 True indel: stretch of mismatches 45913902 45923206 45681451 45690755 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = -5839427 40083780 40098912 45690756 45705862 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = 5839401 45941310 45984490 45708859 45752101 NC_060940.1 CM021583.2 99.57 True fake: not a misassembly (possible transposable element) 41527001 41531116 45752102 45756217 NC_060940.1 CM021583.2 99.26 True fake: not a misassembly (possible transposable element) 45988607 46005521 45756218 45773148 NC_060940.1 CM021583.2 99.43 True relocation, inconsistency = -4433157 41572365 41576267 45773149 45777051 NC_060940.1 CM021583.2 99.56 True relocation, inconsistency = 4433156 46009424 46022652 45777052 45790280 NC_060940.1 CM021583.2 99.83 True indel: stretch of mismatches 46022653 46079427 45790281 45847016 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -2120905 43962324 43967938 45850818 45856455 NC_060940.1 CM021583.2 99.56 True relocation, inconsistency = 2120928 46088867 46097763 45856456 45865352 NC_060940.1 CM021583.2 99.94 True indel: stretch of mismatches 46097764 46102509 45865353 45870098 NC_060940.1 CM021583.2 99.83 True relocation, inconsistency = 1476866 47585164 47615166 45875887 45905938 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = -1458856 46156311 46160015 45905939 45909643 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -4581578 41578438 41590722 45909644 45921928 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 4563617 46154340 46177600 45921929 45945127 NC_060940.1 CM021583.2 99.64 True relocation, inconsistency = 4552603 50730204 50734418 45945128 45949342 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -9062025 41683269 41686788 45960218 45963737 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 4509422 46196211 46230996 45963738 45998492 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = -2797122 43433875 43434604 45998493 45999222 NC_060940.1 CM021583.2 99.4 True indel: stretch of mismatches 43434605 43468628 45999223 46033230 NC_060940.1 CM021583.2 99.48 True relocation, inconsistency = 615099 44083728 44095708 46033231 46045212 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 2849411 46945771 46963759 46045864 46063875 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = -15977 46947928 46962811 46064021 46078904 NC_060940.1 CM021583.2 99.35 True relocation, inconsistency = -4426000 42536812 42571048 46078905 46113213 NC_060940.1 CM021583.2 99.38 True indel: indel (> 5bp) 42571463 42592259 46113612 46134408 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 3668012 46260272 46273920 46134409 46148057 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = 1560194 47834115 47845875 46148058 46159845 NC_060940.1 CM021583.2 99.5 True relocation, inconsistency = -5917374 41928502 41958565 46159846 46189909 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 4503608 46462174 46585384 46189910 46313136 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = -4505340 42080045 42085912 46313137 46319004 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = 4505340 46591253 46746216 46319005 46474094 NC_060940.1 CM021583.2 99.86 True indel: stretch of mismatches 46746217 46750054 46474095 46477932 NC_060940.1 CM021583.2 99.93 True indel: stretch of mismatches 46750055 46773900 46477933 46501778 NC_060940.1 CM021583.2 99.96 True relocation, inconsistency = -2787451 43986680 43990796 46502009 46506125 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 2032646 46023443 46028308 46506126 46510991 NC_060940.1 CM021583.2 99.89 True relocation, inconsistency = -4433156 41595153 41614487 46510992 46530326 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = -11850 41602638 41608740 46530327 46536429 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 1763651 43372392 43373990 46536430 46538028 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 63851 43438831 43467801 46539018 46567971 NC_060940.1 CM021583.2 99.4 True relocation, inconsistency = -1738194 41729608 41742394 46567972 46580781 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = 5190121 46934283 46935227 46582549 46583493 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = -5232147 41703081 41703624 46583494 46584037 NC_060940.1 CM021583.2 99.53 True relocation, inconsistency = 5244847 46948472 46963759 46584038 46599324 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = -15977 46947928 47009225 46599470 46660767 NC_060940.1 CM021583.2 99.89 True indel: indel (<= 5bp) 47009287 47098074 46660826 46749613 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = 1500285 48598608 48606273 46749862 46757517 NC_060940.1 CM021583.2 99.66 True local misassembly 48611398 48613491 46757518 46759611 NC_060940.1 CM021583.2 99.44 True relocation, inconsistency = -1505422 47108070 47273071 46759612 46924566 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = -1465218 45807854 45828117 46924567 46944840 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = 1465218 47293336 47305891 46944841 46957396 NC_060940.1 CM021583.2 99.6 True indel: stretch of mismatches 47305892 47318924 46957397 46970381 NC_060940.1 CM021583.2 99.31 True indel: stretch of mismatches 47318925 47362389 46970382 47013847 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -1469337 45893053 45908653 47013848 47029448 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 724001 46632655 46638151 47029449 47034945 NC_060940.1 CM021583.2 99.47 True relocation, inconsistency = 745310 47383462 47409796 47034946 47061280 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -4227401 43183246 43184271 47062131 47063156 NC_060940.1 CM021583.2 99.68 True relocation, inconsistency = 4227401 47411673 47468653 47063157 47120149 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -11628 47465358 47472619 47128482 47135743 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 11654 47486736 47511199 47138206 47162620 NC_060940.1 CM021583.2 99.53 True indel: stretch of mismatches 47511200 47545728 47162621 47197172 NC_060940.1 CM021583.2 99.68 True indel: indel (<= 5bp) 47545782 47561271 47197223 47212712 NC_060940.1 CM021583.2 99.93 True local misassembly 47567384 47573495 47212713 47218824 NC_060940.1 CM021583.2 99.94 True relocation, inconsistency = -24448 47550995 47556339 47220772 47226116 NC_060940.1 CM021583.2 99.83 True relocation, inconsistency = -1483024 46073847 46077121 47226648 47229922 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = -3821175 42255947 42262550 47229923 47236526 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 3891078 46153629 46178531 47236527 47261318 NC_060940.1 CM021583.2 99.39 True relocation, inconsistency = -2836303 43342229 43346295 47261319 47265408 NC_060940.1 CM021583.2 98.82 True relocation, inconsistency = 1333935 44680231 44687990 47265409 47273168 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = -1251748 43438651 43470705 47275577 47307615 NC_060940.1 CM021583.2 99.49 True relocation, inconsistency = 615099 44085805 44095708 47307616 47317520 NC_060940.1 CM021583.2 99.83 True relocation, inconsistency = -1601590 42495886 42496830 47319288 47320232 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = 12749 42509580 42525411 47320233 47336064 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = 4422371 46947928 46962811 47336210 47351093 NC_060940.1 CM021583.2 99.32 True relocation, inconsistency = -2077320 44885492 44985671 47351094 47451118 NC_060940.1 CM021583.2 99.38 True relocation, inconsistency = 3308016 48293690 48319490 47451121 47476824 NC_060940.1 CM021583.2 99.36 True relocation, inconsistency = -421367 47898124 47900264 47476825 47478965 NC_060940.1 CM021583.2 98.17 True indel: indel (> 5bp) 47900524 47937664 47479248 47516458 NC_060940.1 CM021583.2 99.57 True relocation, inconsistency = -5312096 42625569 42691868 47516459 47582733 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = 4448436 47140305 47152566 47582734 47595014 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = -6445473 40707094 40709905 47595015 47597826 NC_060940.1 CM021583.2 99.1 True relocation, inconsistency = 7375311 48085217 48091524 47597827 47604131 NC_060940.1 CM021583.2 98.36 True relocation, inconsistency = -75226 48016299 48044746 47604132 47632602 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = -8428856 39615891 39618248 47632603 47634960 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = 3489388 43107637 43113748 47634961 47641072 NC_060940.1 CM021583.2 99.73 True local misassembly 43107637 43117686 47641073 47651096 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = 2537942 45655629 45658791 47651097 47654262 NC_060940.1 CM021583.2 99.23 True relocation, inconsistency = 2478219 48137011 48176523 47654263 47693765 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = -6050440 42126084 42137806 47693766 47705488 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = 5245655 47383462 47411412 47705489 47733437 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -1909591 45501822 45506048 47733438 47737700 NC_060940.1 CM021583.2 98.61 True relocation, inconsistency = 2729336 48235385 48269205 47737701 47771520 NC_060940.1 CM021583.2 99.85 True local misassembly 48272661 48283747 47771658 47782695 NC_060940.1 CM021583.2 98.45 True relocation, inconsistency = 1024328 49308076 49317597 47782696 47792207 NC_060940.1 CM021583.2 99.18 True local misassembly 49319853 49325056 47792208 47797411 NC_060940.1 CM021583.2 99.53 True relocation, inconsistency = -1044231 48280826 48319587 47797412 47836049 NC_060940.1 CM021583.2 99.22 True relocation, inconsistency = 1577391 49896979 49918293 47836050 47857351 NC_060940.1 CM021583.2 99.21 True relocation, inconsistency = -1625915 48292379 48327462 47857352 47892327 NC_060940.1 CM021583.2 99.37 True relocation, inconsistency = -281695 48045768 48049367 47892328 47895914 NC_060940.1 CM021583.2 98.17 True relocation, inconsistency = -2260589 45789403 45796194 47896539 47903330 NC_060940.1 CM021583.2 99.35 True relocation, inconsistency = -5582395 40213838 40226420 47903369 47915952 NC_060940.1 CM021583.2 99.59 True local misassembly 40220310 40225258 47915953 47920902 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = 8124369 48349628 48351643 47920903 47922918 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = -4389320 43962324 43971318 47922919 47931985 NC_060940.1 CM021583.2 98.97 True relocation, inconsistency = -4168444 39803238 39815942 47932349 47944982 NC_060940.1 CM021583.2 98.26 True relocation, inconsistency = 8560130 48376074 48393316 47944984 47962254 NC_060940.1 CM021583.2 99.37 True relocation, inconsistency = 1013652 49406969 49413830 47962255 47969116 NC_060940.1 CM021583.2 98.82 True relocation, inconsistency = -1013640 48400191 48412786 47969117 47981712 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = -1536771 46876016 46886940 47981713 47992622 NC_060940.1 CM021583.2 99.08 True relocation, inconsistency = 1536809 48423750 48427501 47992623 47996374 NC_060940.1 CM021583.2 99.66 True indel: stretch of mismatches 48427502 48464813 47996375 48033652 NC_060940.1 CM021583.2 99.7 True fake: not a misassembly (possible transposable element) 47732915 47734051 48033653 48034789 NC_060940.1 CM021583.2 99.47 True fake: not a misassembly (possible transposable element) 48459843 48468928 48034790 48043921 NC_060940.1 CM021583.2 96.97 True relocation, inconsistency = 26969 48495898 48534937 48043922 48082938 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = 38835 48573773 48611599 48082939 48120871 NC_060940.1 CM021583.2 99.49 True relocation, inconsistency = 25311 48636911 48694884 48120872 48178823 NC_060940.1 CM021583.2 99.61 True local misassembly 48688750 48694295 48178824 48184372 NC_060940.1 CM021583.2 99.19 True local misassembly 48700498 48716275 48184463 48200241 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = -8257577 40459162 40464371 48200705 48205914 NC_060940.1 CM021583.2 95.26 True relocation, inconsistency = 8269671 48734043 48750904 48205915 48223194 NC_060940.1 CM021583.2 97.29 True relocation, inconsistency = -7653460 41097604 41114459 48223354 48240221 NC_060940.1 CM021583.2 98.96 True local misassembly 41120569 41127157 48240222 48246814 NC_060940.1 CM021583.2 98.35 True relocation, inconsistency = -75384 41060946 41062195 48255987 48257236 NC_060940.1 CM021583.2 98.61 True relocation, inconsistency = 7722864 48785060 48791171 48257237 48263348 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 48791172 48804765 48263349 48276942 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = 27250 48832016 48833443 48276943 48278370 NC_060940.1 CM021583.2 98.07 True relocation, inconsistency = -39474 48795976 48802086 48280377 48286487 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 12224 48814311 48822649 48286488 48294810 NC_060940.1 CM021583.2 99.44 True indel: stretch of mismatches 48822650 48828816 48294811 48300977 NC_060940.1 CM021583.2 99.35 True indel: indel (<= 5bp) 48829060 48878194 48301224 48350385 NC_060940.1 CM021583.2 99.86 True relocation, inconsistency = -1810064 47068131 47098074 48350386 48380308 NC_060940.1 CM021583.2 99.3 True relocation, inconsistency = -7046162 40051913 40053237 48380309 48381633 NC_060940.1 CM021583.2 98.02 True relocation, inconsistency = 145066 40198304 40226950 48381634 48410257 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = 8659036 48885987 48889194 48410258 48413465 NC_060940.1 CM021583.2 99.62 True local misassembly 48883083 48901517 48413466 48431900 NC_060940.1 CM021583.2 99.56 True relocation, inconsistency = -7855231 41046315 41049040 48431929 48434654 NC_060940.1 CM021583.2 98.69 True relocation, inconsistency = -798455 40250586 40256699 48434655 48440764 NC_060940.1 CM021583.2 99.55 True indel: stretch of mismatches 40256700 40264447 48440765 48448512 NC_060940.1 CM021583.2 99.21 True relocation, inconsistency = -18336 40246161 40252271 48448562 48454649 NC_060940.1 CM021583.2 99.39 True indel: stretch of mismatches 40252272 40254392 48454650 48456770 NC_060940.1 CM021583.2 99.71 True relocation, inconsistency = 8629239 48883632 48905448 48456771 48478588 NC_060940.1 CM021583.2 99.64 True fake: not a misassembly (possible transposable element) 40270099 40273921 48478589 48482388 NC_060940.1 CM021583.2 99.3 True fake: not a misassembly (possible transposable element) 48917388 48928594 48484416 48495624 NC_060940.1 CM021583.2 99.8 True indel: stretch of mismatches 48928595 48976357 48495625 48543376 NC_060940.1 CM021583.2 99.6 True fake: not a misassembly (possible transposable element) 40465796 40468060 48543377 48545641 NC_060940.1 CM021583.2 96.53 True fake: not a misassembly (possible transposable element) 48977379 48987238 48545642 48555522 NC_060940.1 CM021583.2 99.25 True relocation, inconsistency = -20160 48967089 48982770 48555533 48570755 NC_060940.1 CM021583.2 96.7 True relocation, inconsistency = -12336 48970435 49006664 48570756 48607088 NC_060940.1 CM021583.2 99.5 True relocation, inconsistency = -18724 48987941 49001673 48607089 48620821 NC_060940.1 CM021583.2 99.79 True relocation, inconsistency = -9390 48992284 49015290 48620822 48644212 NC_060940.1 CM021583.2 97.44 True indel: indel (> 5bp) 49015455 49029870 48644387 48658780 NC_060940.1 CM021583.2 98.64 True indel: stretch of mismatches 49029871 49035011 48658781 48663921 NC_060940.1 CM021583.2 99.61 True indel: indel (<= 5bp) 49035065 49084221 48663972 48713052 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = 1481050 50565516 50569689 48713297 48717472 NC_060940.1 CM021583.2 99.05 True relocation, inconsistency = -1481048 49088642 49137481 48717473 48766330 NC_060940.1 CM021583.2 99.69 True relocation, inconsistency = -38328 49099154 49133316 48766331 48800493 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = -8199518 40933799 40982644 48800494 48849042 NC_060940.1 CM021583.2 99.08 True relocation, inconsistency = -354862 40627783 40629204 48849043 48850464 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = -239452 40389753 40391897 48850465 48852632 NC_060940.1 CM021583.2 99.33 True relocation, inconsistency = 8782974 49174872 49183307 48852633 48861094 NC_060940.1 CM021583.2 99.39 True local misassembly 49189368 49207154 48861095 48878881 NC_060940.1 CM021583.2 99.92 True relocation, inconsistency = 1653914 50861328 50866398 48879141 48884211 NC_060940.1 CM021583.2 99.45 True relocation, inconsistency = 513424 51381910 51383978 48886299 48888367 NC_060940.1 CM021583.2 98.09 True relocation, inconsistency = -138288 51245691 51251125 48888368 48893730 NC_060940.1 CM021583.2 98.64 True relocation, inconsistency = -2053379 49197747 49203020 48893731 48899056 NC_060940.1 CM021583.2 99.05 True relocation, inconsistency = 12224 49215245 49228167 48899057 48912028 NC_060940.1 CM021583.2 99.39 True relocation, inconsistency = -8539677 40688491 40689586 48912029 48913124 NC_060940.1 CM021583.2 99.68 True local misassembly 40683475 40690806 48913125 48920456 NC_060940.1 CM021583.2 99.66 True relocation, inconsistency = 8533565 49224372 49232184 48920457 48928269 NC_060940.1 CM021583.2 99.55 True local misassembly 49238297 49265107 48928270 48955009 NC_060940.1 CM021583.2 99.49 True relocation, inconsistency = -19299 49245809 49255086 48955010 48964216 NC_060940.1 CM021583.2 99.43 True relocation, inconsistency = 11076 49266163 49338339 48964217 49036357 NC_060940.1 CM021583.2 99.69 True fake: not a misassembly (possible transposable element) 41600891 41605894 49043083 49048076 NC_060940.1 CM021583.2 96.6 True fake: not a misassembly (possible transposable element) 49350069 49368972 49048077 49066980 NC_060940.1 CM021583.2 99.85 True indel: stretch of mismatches 49368973 49391814 49066981 49089836 NC_060940.1 CM021583.2 99.65 True indel: indel (<= 5bp) 49391879 49401039 49089898 49099058 NC_060940.1 CM021583.2 99.53 True relocation, inconsistency = -4662009 44739031 44761696 49099059 49121722 NC_060940.1 CM021583.2 98.4 True relocation, inconsistency = -2387726 42373971 42395421 49121723 49143176 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = 1066036 43461458 43470838 49143177 49152561 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = 6121874 49592713 49608094 49152562 49167956 NC_060940.1 CM021583.2 99.73 True relocation, inconsistency = -5522290 44085805 44089597 49167957 49171749 NC_060940.1 CM021583.2 99.41 True relocation, inconsistency = -2359833 41729765 41734903 49171750 49176911 NC_060940.1 CM021583.2 99.15 True relocation, inconsistency = 5109670 46844574 46860181 49176912 49192524 NC_060940.1 CM021583.2 98.85 True relocation, inconsistency = 2565083 49425414 49466985 49192674 49234245 NC_060940.1 CM021583.2 99.85 True indel: stretch of mismatches 49466986 49552227 49234246 49319486 NC_060940.1 CM021583.2 99.87 True indel: stretch of mismatches 49552228 49559507 49319487 49326740 NC_060940.1 CM021583.2 99.6 True relocation, inconsistency = -5498254 44061254 44079263 49326741 49344750 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = 5498254 49578035 49579848 49345268 49347081 NC_060940.1 CM021583.2 99.59 True relocation, inconsistency = -6143530 43436319 43471890 49347082 49382637 NC_060940.1 CM021583.2 99.49 True relocation, inconsistency = -1732646 41739245 41741989 49382638 49385382 NC_060940.1 CM021583.2 99.72 True relocation, inconsistency = 7876147 49618137 49635441 49385383 49402687 NC_060940.1 CM021583.2 99.86 True indel: stretch of mismatches 49635442 49669536 49402688 49436769 NC_060940.1 CM021583.2 99.78 True indel: stretch of mismatches 49669537 49675376 49436770 49442609 NC_060940.1 CM021583.2 99.27 True indel: stretch of mismatches 49675398 49721976 49442631 49489226 NC_060940.1 CM021583.2 99.78 True indel: stretch of mismatches 49721977 49789359 49489227 49556619 NC_060940.1 CM021583.2 99.79 True indel: indel (> 5bp) 49789579 49793427 49556897 49560745 NC_060940.1 CM021583.2 99.74 True indel: stretch of mismatches 49793428 49809363 49560746 49576681 NC_060940.1 CM021583.2 99.76 True indel: stretch of mismatches 49809468 49820694 49576786 49588012 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -7975873 41844822 41856504 49588013 49599695 NC_060940.1 CM021583.2 99.64 True relocation, inconsistency = 7975869 49832374 49893584 49599696 49660868 NC_060940.1 CM021583.2 99.65 True indel: stretch of mismatches 49893677 49947336 49660961 49714662 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = 1403529 51350866 51353246 49714663 49717043 NC_060940.1 CM021583.2 99.65 True relocation, inconsistency = 40343 51393590 51402984 49717044 49726438 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = 469052 51872037 51877362 49726439 49731764 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -1912921 49964442 50045959 49731765 49813282 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 50045960 50049354 49813283 49816677 NC_060940.1 CM021583.2 99.75 True indel: stretch of mismatches 50049665 50080007 49816988 49847206 NC_060940.1 CM021583.2 99.49 True indel: indel (<= 5bp) 50080214 50112255 49847416 49879457 NC_060940.1 CM021583.2 99.96 True relocation, inconsistency = -8389506 41726941 41732138 49883649 49888869 NC_060940.1 CM021583.2 99.0 True relocation, inconsistency = 6943699 48675838 48683406 49888870 49896438 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = 1478895 50162302 50173419 49896439 49907556 NC_060940.1 CM021583.2 99.65 True relocation, inconsistency = -109571 50064514 50067060 49908222 49910768 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = 76480 50143541 50160983 49910769 49928211 NC_060940.1 CM021583.2 99.76 True indel: indel (> 5bp) 50161206 50195639 49928427 49962863 NC_060940.1 CM021583.2 99.8 True relocation, inconsistency = -28331 50167309 50179925 49962864 49975480 NC_060940.1 CM021583.2 99.81 True relocation, inconsistency = 34443 50214369 50244090 49975481 50005201 NC_060940.1 CM021583.2 99.86 True local misassembly 50240427 50245121 50005202 50009896 NC_060940.1 CM021583.2 99.01 True local misassembly 50251272 50284221 50009897 50042930 NC_060940.1 CM021583.2 99.21 True relocation, inconsistency = 26970 50311192 50323697 50042931 50055413 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = 18854 50342552 50343739 50055414 50056601 NC_060940.1 CM021583.2 99.67 True indel: indel (> 5bp) 50343766 50345710 50056602 50058546 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = -12009 50333702 50353799 50058547 50078553 NC_060940.1 CM021583.2 99.26 True local misassembly 50359848 50376128 50078554 50094818 NC_060940.1 CM021583.2 99.34 True relocation, inconsistency = 27905 50404034 50413367 50094819 50104093 NC_060940.1 CM021583.2 98.82 True relocation, inconsistency = -1471570 48941798 48948446 50104094 50110716 NC_060940.1 CM021583.2 98.09 True relocation, inconsistency = -9363454 39584993 39587355 50110717 50113079 NC_060940.1 CM021583.2 98.92 True relocation, inconsistency = 10817642 50404998 50412485 50113080 50120661 NC_060940.1 CM021583.2 97.91 True relocation, inconsistency = -9694190 40718296 40736337 50120662 50138684 NC_060940.1 CM021583.2 98.86 True relocation, inconsistency = 8304849 49041871 49049866 50139369 50147325 NC_060940.1 CM021583.2 97.85 True relocation, inconsistency = 1375762 50425629 50431233 50147326 50152952 NC_060940.1 CM021583.2 97.94 True relocation, inconsistency = -5662563 44768671 44772201 50152953 50156482 NC_060940.1 CM021583.2 98.19 True relocation, inconsistency = -4051039 40721163 40733164 50156483 50168487 NC_060940.1 CM021583.2 98.57 True relocation, inconsistency = -265332 40467833 40474239 50168488 50174885 NC_060940.1 CM021583.2 98.22 True relocation, inconsistency = -329337 40144990 40152721 50174973 50182685 NC_060940.1 CM021583.2 98.81 True relocation, inconsistency = 4628021 44780743 44786110 50182686 50188044 NC_060940.1 CM021583.2 98.69 True relocation, inconsistency = 5637354 50423465 50427952 50188045 50192519 NC_060940.1 CM021583.2 98.77 True local misassembly 50421877 50430910 50192520 50201566 NC_060940.1 CM021583.2 98.46 True relocation, inconsistency = -7423 50423488 50427361 50201567 50205427 NC_060940.1 CM021583.2 98.75 True local misassembly 50421286 50460358 50205428 50244675 NC_060940.1 CM021583.2 99.13 True indel: stretch of mismatches 50460359 50546055 50244676 50330413 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = -9767301 40778755 40780050 50330414 50331709 NC_060940.1 CM021583.2 98.73 True local misassembly 40780345 40781540 50331710 50332905 NC_060940.1 CM021583.2 99.33 True local misassembly 40781639 40783441 50332906 50334708 NC_060940.1 CM021583.2 98.95 True relocation, inconsistency = 9678425 50462347 50485405 50335189 50358187 NC_060940.1 CM021583.2 98.31 True relocation, inconsistency = -16985 50468421 50480350 50358188 50370168 NC_060940.1 CM021583.2 98.3 True relocation, inconsistency = -9316678 41163673 41165268 50370169 50371757 NC_060940.1 CM021583.2 98.02 True relocation, inconsistency = 8798550 49963839 49966326 50371778 50374241 NC_060940.1 CM021583.2 97.79 True local misassembly 49963852 49966326 50374242 50376692 NC_060940.1 CM021583.2 97.75 True relocation, inconsistency = -950365 49016422 49024532 50377153 50385206 NC_060940.1 CM021583.2 97.99 True relocation, inconsistency = 1047728 50072273 50074760 50385219 50387682 NC_060940.1 CM021583.2 97.83 True relocation, inconsistency = -110909 49963852 49966313 50387683 50390120 NC_060940.1 CM021583.2 97.83 True local misassembly 49963839 49966326 50390121 50392584 NC_060940.1 CM021583.2 97.79 True relocation, inconsistency = -950365 49016422 49026889 50393045 50403478 NC_060940.1 CM021583.2 98.16 True relocation, inconsistency = -9438437 39588461 39590950 50403487 50405976 NC_060940.1 CM021583.2 98.17 True relocation, inconsistency = 9349523 48940474 48946651 50405977 50412182 NC_060940.1 CM021583.2 97.49 True relocation, inconsistency = 1584889 50531666 50538521 50412308 50419190 NC_060940.1 CM021583.2 96.82 True relocation, inconsistency = 10283 50549208 50641309 50419594 50511651 NC_060940.1 CM021583.2 99.64 True indel: stretch of mismatches 50641608 50709335 50511950 50579726 NC_060940.1 CM021583.2 99.81 True local misassembly 50703224 50704697 50579727 50581200 NC_060940.1 CM021583.2 99.47 True local misassembly 50710810 50718671 50581201 50589062 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = 24448 50743120 50747574 50589063 50593468 NC_060940.1 CM021583.2 98.96 True relocation, inconsistency = -12224 50738203 50747574 50596321 50605692 NC_060940.1 CM021583.2 99.95 True relocation, inconsistency = -12224 50738203 50747574 50608545 50617916 NC_060940.1 CM021583.2 99.91 True indel: stretch of mismatches 50747595 50750521 50617937 50620863 NC_060940.1 CM021583.2 98.33 True relocation, inconsistency = -58068 50692454 50706432 50620864 50634728 NC_060940.1 CM021583.2 98.72 True relocation, inconsistency = 105484 50811917 50815749 50634729 50638561 NC_060940.1 CM021583.2 99.48 True local misassembly 50821862 50834084 50638562 50650785 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = -30559 50803526 50824228 50650786 50671488 NC_060940.1 CM021583.2 99.94 True local misassembly 50830340 50832695 50671489 50673844 NC_060940.1 CM021583.2 99.66 True fake: not a misassembly (possible transposable element) 51362276 51368614 50673845 50680255 NC_060940.1 CM021583.2 98.35 True fake: not a misassembly (possible transposable element) 50833099 50840768 50680360 50688029 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 50840769 50883003 50688030 50730263 NC_060940.1 CM021583.2 99.9 True local misassembly 50889116 50894574 50730264 50735722 NC_060940.1 CM021583.2 99.59 True relocation, inconsistency = -28297 50866278 50871878 50735723 50741323 NC_060940.1 CM021583.2 99.83 True local misassembly 50877991 50895956 50741324 50759289 NC_060940.1 CM021583.2 99.93 True relocation, inconsistency = 12224 50908181 50944705 50759290 50795814 NC_060940.1 CM021583.2 99.95 True local misassembly 50938594 50939944 50795815 50797165 NC_060940.1 CM021583.2 98.32 True local misassembly 50946057 50965189 50797166 50816298 NC_060940.1 CM021583.2 99.84 True relocation, inconsistency = 340004 51305194 51314940 50816299 50826045 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = -340001 50974940 50995021 50826046 50846079 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = 398604 51393626 51396098 50846080 50848552 NC_060940.1 CM021583.2 99.53 True relocation, inconsistency = -12204 51383895 51394693 50848553 50859358 NC_060940.1 CM021583.2 99.44 True local misassembly 51388592 51402984 50859359 50873761 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 469052 51872037 51876800 50873762 50878525 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = -859890 51016911 51025576 50878526 50887191 NC_060940.1 CM021583.2 99.79 True local misassembly 51020426 51038561 50887192 50905297 NC_060940.1 CM021583.2 98.66 True relocation, inconsistency = -12077 51026485 51027764 50905298 50906577 NC_060940.1 CM021583.2 97.54 True relocation, inconsistency = 891702 51919467 51921583 50906578 50908694 NC_060940.1 CM021583.2 99.18 True relocation, inconsistency = 62642 51984226 52007562 50908695 50932044 NC_060940.1 CM021583.2 99.2 True relocation, inconsistency = -903170 51104545 51133716 50932197 50961412 NC_060940.1 CM021583.2 98.8 True relocation, inconsistency = 317881 51451598 51469333 50961413 50979197 NC_060940.1 CM021583.2 99.62 True relocation, inconsistency = -449781 51021015 51037505 50980660 50997117 NC_060940.1 CM021583.2 99.39 True relocation, inconsistency = 948840 51986346 52009743 50997118 51020531 NC_060940.1 CM021583.2 99.22 True relocation, inconsistency = -946655 51063089 51065922 51020532 51023365 NC_060940.1 CM021583.2 99.11 True relocation, inconsistency = 49938 51115976 51128518 51023481 51035998 NC_060940.1 CM021583.2 98.71 True relocation, inconsistency = -49940 51079189 51164217 51036609 51121777 NC_060940.1 CM021583.2 99.26 True local misassembly 51164910 51173669 51122470 51131229 NC_060940.1 CM021583.2 99.87 True relocation, inconsistency = 31040 51204832 51209999 51131352 51136616 NC_060940.1 CM021583.2 98.45 True relocation, inconsistency = -31043 51178957 51199569 51136617 51157229 NC_060940.1 CM021583.2 99.88 True relocation, inconsistency = -927176 50272509 50281818 51157345 51166628 NC_060940.1 CM021583.2 98.8 True relocation, inconsistency = -10464850 39818502 39819871 51168162 51169531 NC_060940.1 CM021583.2 98.4 True relocation, inconsistency = 11365039 51184911 51185571 51169532 51170192 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = 26985 51212557 51225044 51170193 51182684 NC_060940.1 CM021583.2 99.46 True local misassembly 51219278 51227671 51183036 51191423 NC_060940.1 CM021583.2 99.76 True local misassembly 51233738 51239803 51191424 51197489 NC_060940.1 CM021583.2 99.93 True local misassembly 51244202 51265273 51201888 51222959 NC_060940.1 CM021583.2 99.89 True indel: stretch of mismatches 51265274 51275660 51222960 51233395 NC_060940.1 CM021583.2 99.42 True relocation, inconsistency = -57169 51218492 51220766 51233396 51235664 NC_060940.1 CM021583.2 99.5 True relocation, inconsistency = 57163 51277930 51287519 51235665 51245254 NC_060940.1 CM021583.2 99.76 True relocation, inconsistency = 522289 51809809 51821058 51245255 51256553 NC_060940.1 CM021583.2 99.31 True relocation, inconsistency = -517590 51303469 51314940 51256554 51268025 NC_060940.1 CM021583.2 99.63 True relocation, inconsistency = -340001 50974940 50995021 51268026 51288059 NC_060940.1 CM021583.2 99.55 True relocation, inconsistency = 398604 51393626 51408610 51288060 51303034 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = -18323 51390288 51402984 51303035 51315741 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 469052 51872037 51876800 51315742 51320505 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = -859890 51016911 51025576 51320506 51329171 NC_060940.1 CM021583.2 99.75 True local misassembly 51020426 51038561 51329172 51347277 NC_060940.1 CM021583.2 98.63 True relocation, inconsistency = -12077 51026485 51027764 51347278 51348557 NC_060940.1 CM021583.2 97.5 True relocation, inconsistency = 891702 51919467 51921583 51348558 51350674 NC_060940.1 CM021583.2 99.18 True relocation, inconsistency = 62642 51984226 52007562 51350675 51374024 NC_060940.1 CM021583.2 99.2 True relocation, inconsistency = -903170 51104545 51125497 51374177 51395101 NC_060940.1 CM021583.2 98.78 True relocation, inconsistency = 317809 51443307 51472644 51395102 51424468 NC_060940.1 CM021583.2 99.46 True relocation, inconsistency = 18306 51490951 51496292 51424469 51429797 NC_060940.1 CM021583.2 99.39 True relocation, inconsistency = 478606 51975825 52007114 51430724 51461961 NC_060940.1 CM021583.2 99.04 True relocation, inconsistency = -1177989 50829126 50836451 51461962 51469287 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = 878375 51715779 51723201 51470240 51477744 NC_060940.1 CM021583.2 98.49 True relocation, inconsistency = -186743 51536459 51541635 51477745 51482931 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = 18763 51560399 51571542 51482932 51493951 NC_060940.1 CM021583.2 98.36 True relocation, inconsistency = -34060 51537483 51541635 51493952 51498117 NC_060940.1 CM021583.2 99.2 True relocation, inconsistency = 18763 51560399 51571624 51498118 51509245 NC_060940.1 CM021583.2 98.64 True local misassembly 51578257 51583838 51509716 51515323 NC_060940.1 CM021583.2 99.41 True relocation, inconsistency = 12234 51596577 51601933 51515828 51521184 NC_060940.1 CM021583.2 99.67 True local misassembly 51595832 51603207 51521185 51528560 NC_060940.1 CM021583.2 99.72 True relocation, inconsistency = -58496 51550294 51552051 51534143 51535900 NC_060940.1 CM021583.2 97.91 True relocation, inconsistency = -18316 51533736 51544672 51535901 51546837 NC_060940.1 CM021583.2 99.86 True fake: not a misassembly (possible transposable element) 51534961 51538089 51549340 51552468 NC_060940.1 CM021583.2 99.73 True fake: not a misassembly (possible transposable element) 51550294 51556307 51552469 51558482 NC_060940.1 CM021583.2 99.77 True local misassembly 51550294 51565506 51558483 51573672 NC_060940.1 CM021583.2 99.67 True local misassembly 51558860 51567906 51573673 51582719 NC_060940.1 CM021583.2 99.52 True relocation, inconsistency = -18773 51549134 51552051 51582720 51585637 NC_060940.1 CM021583.2 99.74 True relocation, inconsistency = -18316 51533736 51540990 51585638 51592892 NC_060940.1 CM021583.2 99.77 True relocation, inconsistency = 174601 51715779 51723201 51593080 51600584 NC_060940.1 CM021583.2 98.45 True relocation, inconsistency = -186743 51536459 51540433 51600585 51604559 NC_060940.1 CM021583.2 99.58 True relocation, inconsistency = -12224 51528210 51536234 51604560 51612486 NC_060940.1 CM021583.2 98.48 True indel: stretch of mismatches 51536235 51538089 51612487 51614341 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = 12204 51550294 51563435 51614342 51627385 NC_060940.1 CM021583.2 98.88 True local misassembly 51556789 51563267 51627386 51633864 NC_060940.1 CM021583.2 99.88 True local misassembly 51556621 51568548 51633865 51645818 NC_060940.1 CM021583.2 99.56 True relocation, inconsistency = 15324 51584343 51597105 51646289 51659051 NC_060940.1 CM021583.2 99.88 True indel: stretch of mismatches 51597106 51603207 51659052 51665153 NC_060940.1 CM021583.2 99.72 True local misassembly 51609320 51610089 51665154 51665923 NC_060940.1 CM021583.2 99.7 True local misassembly 51611299 51617492 51667133 51673326 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 24448 51642089 51647461 51673475 51678873 NC_060940.1 CM021583.2 99.61 True relocation, inconsistency = 18336 51665798 51677874 51678874 51690950 NC_060940.1 CM021583.2 99.85 True relocation, inconsistency = 30508 51708383 51720696 51690951 51703346 NC_060940.1 CM021583.2 99.06 True local misassembly 51714781 51724087 51703461 51712767 NC_060940.1 CM021583.2 98.06 True local misassembly 51717976 51720696 51712768 51715488 NC_060940.1 CM021583.2 99.81 True indel: stretch of mismatches 51720811 51724309 51715603 51719101 NC_060940.1 CM021583.2 99.81 True local misassembly 51718198 51729313 51719102 51730168 NC_060940.1 CM021583.2 99.09 True local misassembly 51735350 51739531 51730169 51734350 NC_060940.1 CM021583.2 99.14 True indel: indel (<= 5bp) 51739661 51761033 51734477 51755780 NC_060940.1 CM021583.2 99.02 True local misassembly 51757906 51783199 51756094 51781339 NC_060940.1 CM021583.2 99.42 True relocation, inconsistency = -1005146 50778054 50785189 51781340 51788205 NC_060940.1 CM021583.2 95.37 True relocation, inconsistency = 999049 51784239 51804492 51788206 51808459 NC_060940.1 CM021583.2 99.75 True relocation, inconsistency = -727831 51076662 51080583 51808460 51812381 NC_060940.1 CM021583.2 99.28 True relocation, inconsistency = -809621 50270963 50283672 51812382 51825091 NC_060940.1 CM021583.2 98.87 True relocation, inconsistency = 208186 50492304 50495239 51825537 51828472 NC_060940.1 CM021583.2 98.37 True relocation, inconsistency = -1035065 49460175 49465312 51828473 51833610 NC_060940.1 CM021583.2 99.01 True relocation, inconsistency = 1312143 50777456 50785563 51833611 51841577 NC_060940.1 CM021583.2 96.99 True local misassembly 50779453 50785189 51841578 51847173 NC_060940.1 CM021583.2 95.42 True relocation, inconsistency = 999049 51784239 51804492 51847174 51867427 NC_060940.1 CM021583.2 99.76 True fake: not a misassembly (possible transposable element) 51076662 51081195 51867428 51871961 NC_060940.1 CM021583.2 99.32 True fake: not a misassembly (possible transposable element) 51809115 51821058 51872050 51883993 NC_060940.1 CM021583.2 99.65 True relocation, inconsistency = -517590 51303469 51314940 51883994 51895465 NC_060940.1 CM021583.2 99.63 True relocation, inconsistency = -340001 50974940 50995021 51895466 51915499 NC_060940.1 CM021583.2 99.54 True relocation, inconsistency = -18368 50976654 50992159 51915500 51930960 NC_060940.1 CM021583.2 99.35 True relocation, inconsistency = 398614 51390774 51402984 51930961 51943181 NC_060940.1 CM021583.2 99.67 True relocation, inconsistency = 469052 51872037 51877048 51943182 51948193 NC_060940.1 CM021583.2 99.82 True relocation, inconsistency = -866002 51011047 51019464 51948194 51956611 NC_060940.1 CM021583.2 99.79 True local misassembly 51020426 51038271 51956612 51974427 NC_060940.1 CM021583.2 98.68 True relocation, inconsistency = -12077 51026195 51027764 51974428 51975997 NC_060940.1 CM021583.2 97.61 True relocation, inconsistency = 891702 51919467 51923703 51975998 51980234 NC_060940.1 CM021583.2 99.18 True relocation, inconsistency = -9983 51913721 51984236 51980235 52050747 NC_060940.1 CM021583.2 99.78 True relocation, inconsistency = 9968 51994205 52081903 52050748 52138836 NC_060940.1 CM021583.2 99.33 True indel: indel (<= 5bp) 52081961 52098130 52138891 52155059 NC_060940.1 CM021583.2 99.75 True local misassembly 52098968 52112092 52155897 52169016 NC_060940.1 CM021583.2 99.38 True indel: indel (> 5bp) 52112426 52133505 52169327 52190747 NC_060940.1 CM021583.2 98.19 True local misassembly 52130621 54414630 52190748 54475016 NC_060940.1 CM021583.2 99.94 True indel: indel (> 5bp) 54415110 61509423 54475509 61570685 NC_060940.1 CM021583.2 99.79 True indel: indel (> 5bp) 61509541 61560699 61570793 61621965 NC_060940.1 CM021583.2 99.76 True local misassembly 61561249 61562767 61622467 61623983 NC_060940.1 CM021583.2 96.58 True local misassembly 61567269 61568995 61628467 61630193 NC_060940.1 CM021583.2 97.64 True local misassembly 61571354 61571975 61632793 61633414 NC_060940.1 CM021583.2 97.75 True local misassembly 61573055 61574248 61637049 61638232 NC_060940.1 CM021583.2 95.73 True local misassembly 61574957 61576958 61639174 61641179 NC_060940.1 CM021583.2 95.03 True indel: indel (<= 5bp) 61577101 61578914 61641321 61643110 NC_060940.1 CM021583.2 95.59 True local misassembly 61579441 61580065 61643638 61644264 NC_060940.1 CM021583.2 96.01 True local misassembly 61583490 62200919 61648052 62265824 NC_060940.1 CM021583.2 99.77 True indel: indel (> 5bp) 62201117 62603947 62266069 62668694 NC_060940.1 CM021583.2 99.7 True local misassembly 62604509 63128331 62668855 63192851 NC_060940.1 CM021583.2 99.69 True local misassembly 63128333 64381886 63193659 64446632 NC_060940.1 CM021583.2 99.72 True indel: indel (> 5bp) 64382046 64540041 64446752 64607764 NC_060940.1 CM021583.2 97.89 True local misassembly 64540166 66197957 64607997 66266596 NC_060940.1 CM021583.2 99.67 True indel: indel (> 5bp) 66198129 66671905 66266742 66744358 NC_060940.1 CM021583.2 98.92 True local misassembly 66672376 69953994 66744561 70025923 NC_060940.1 CM021583.2 99.82 True indel: indel (> 5bp) 69954422 69994519 70026373 70066519 NC_060940.1 CM021583.2 99.62 True indel: indel (> 5bp) 69994600 70917768 70066520 70988762 NC_060940.1 CM021583.2 99.73 True local misassembly 70919928 72851795 70990357 72922399 NC_060940.1 CM021583.2 99.82 True indel: indel (> 5bp) 72851870 75927015 72922489 75997247 NC_060940.1 CM021583.2 99.84 True indel: indel (<= 5bp) 75927234 77064573 75997468 77134401 NC_060940.1 CM021583.2 99.89 True indel: indel (> 5bp) 77064685 77876159 77134468 77941245 NC_060940.1 CM021583.2 99.19 True local misassembly 77874440 77875285 77941250 77942095 NC_060940.1 CM021583.2 99.65 True indel: indel (<= 5bp) 77875402 78168088 77942210 78235055 NC_060940.1 CM021583.2 99.79 True local misassembly 78168397 81252945 78235260 81322559 NC_060940.1 CM021583.2 99.71 True inversion 81252946 81269505 81339108 81322560 NC_060940.1 CM021583.2 99.65 True inversion 81269506 87011845 81339109 87077898 NC_060940.1 CM021583.2 99.64 True indel: indel (<= 5bp) 87011952 87790372 87078004 87855966 NC_060940.1 CM021583.2 99.5 True indel: indel (<= 5bp) 87790454 87829380 87856045 87894809 NC_060940.1 CM021583.2 99.34 True local misassembly 87828838 87841834 87894810 87907711 NC_060940.1 CM021583.2 99.02 True indel: indel (> 5bp) 87841928 90017793 87907789 90082583 NC_060940.1 CM021583.2 99.63 True local misassembly 90017960 91471941 90082614 91536845 NC_060940.1 CM021583.2 99.59 True local misassembly 91476890 91584376 91542822 91651027 NC_060940.1 CM021583.2 98.92 True indel: indel (> 5bp) 91584587 91718369 91651207 91785081 NC_060940.1 CM021583.2 99.82 True local misassembly 91718810 93056569 91785627 93126225 NC_060940.1 CM021583.2 99.5 True local misassembly 93057204 93950229 93126936 94019923 NC_060940.1 CM021583.2 99.65 True indel: indel (<= 5bp) 93950266 93952173 94019962 94021868 NC_060940.1 CM021583.2 98.27 True indel: indel (> 5bp) 93952185 94345198 94021924 94418916 NC_060940.1 CM021583.2 98.24 True local misassembly 94345554 94528907 94420342 94602904 NC_060940.1 CM021583.2 98.66 True indel: indel (> 5bp) 94529058 94569250 94602997 94643149 NC_060940.1 CM021583.2 99.56 True local misassembly 94569799 94867704 94648056 94948196 NC_060940.1 CM021583.2 98.71 True local misassembly 94867727 94986796 94949166 95069279 NC_060940.1 CM021583.2 98.34 True local misassembly 94993198 95667168 95069280 95742732 NC_060940.1 CM021583.2 99.1 True local misassembly 95668275 95700782 95743753 95775811 NC_060940.1 CM021583.2 97.87 True indel: indel (> 5bp) 95700820 95731361 95775819 95805799 NC_060940.1 CM021583.2 97.55 True local misassembly 95732883 95937152 95806775 96010558 NC_060940.1 CM021583.2 99.49 True indel: indel (> 5bp) 95937115 96094098 96010599 96167341 NC_060940.1 CM021583.2 99.38 True local misassembly 96094448 96328075 96167409 96400690 NC_060940.1 CM021583.2 99.77 True CONTIG CM021583.2 96402991 misassembled 59 1678 55 1680 NC_060941.1 CM021584.2 99.51 True indel: indel (> 5bp) 2091 19755 2054 19217 NC_060941.1 CM021584.2 95.15 True relocation, inconsistency = 13887 33643 46233 19218 31777 NC_060941.1 CM021584.2 95.99 True local misassembly 46818 49407 32673 35262 NC_060941.1 CM021584.2 99.88 True indel: indel (<= 5bp) 49518 72273 35374 58129 NC_060941.1 CM021584.2 99.98 True local misassembly 72418 80248 58418 66248 NC_060941.1 CM021584.2 99.99 True indel: indel (<= 5bp) 80250 82620 66249 68619 NC_060941.1 CM021584.2 99.96 True indel: indel (<= 5bp) 82621 93719 68621 79719 NC_060941.1 CM021584.2 99.97 True indel: indel (<= 5bp) 94092 94837 80097 80842 NC_060941.1 CM021584.2 100.0 True local misassembly 95329 102363 81388 88422 NC_060941.1 CM021584.2 99.9 True indel: indel (> 5bp) 102398 106054 88423 92079 NC_060941.1 CM021584.2 99.7 True local misassembly 106055 110669 95234 99848 NC_060941.1 CM021584.2 99.72 True indel: indel (<= 5bp) 110671 111443 99849 100621 NC_060941.1 CM021584.2 99.87 True indel: indel (> 5bp) 111528 112167 100622 101261 NC_060941.1 CM021584.2 99.84 True local misassembly 112168 112952 103925 104709 NC_060941.1 CM021584.2 99.87 True indel: indel (<= 5bp) 112953 137572 104711 129330 NC_060941.1 CM021584.2 99.85 True indel: indel (<= 5bp) 137573 138879 129332 130638 NC_060941.1 CM021584.2 99.92 True indel: indel (<= 5bp) 138880 139888 130640 131648 NC_060941.1 CM021584.2 99.8 True local misassembly 140670 141775 132097 133202 NC_060941.1 CM021584.2 99.46 True local misassembly 141776 143985 133503 135712 NC_060941.1 CM021584.2 98.96 True indel: indel (<= 5bp) 144413 146224 136144 137955 NC_060941.1 CM021584.2 99.89 True indel: indel (> 5bp) 146233 147693 137956 139416 NC_060941.1 CM021584.2 99.32 True indel: indel (<= 5bp) 147694 148238 139418 139962 NC_060941.1 CM021584.2 100.0 True indel: indel (> 5bp) 148290 150268 139963 141941 NC_060941.1 CM021584.2 99.95 True indel: indel (> 5bp) 150286 156280 141942 147936 NC_060941.1 CM021584.2 99.78 True local misassembly 156550 157922 148317 149689 NC_060941.1 CM021584.2 99.71 True indel: indel (<= 5bp) 157923 159822 149691 151590 NC_060941.1 CM021584.2 99.58 True local misassembly 159904 160475 151873 152444 NC_060941.1 CM021584.2 97.55 True local misassembly 162770 163356 155811 156397 NC_060941.1 CM021584.2 97.1 True indel: indel (> 5bp) 163357 164177 156465 157285 NC_060941.1 CM021584.2 98.42 True local misassembly 164178 170584 157554 163960 NC_060941.1 CM021584.2 99.75 True local misassembly 170585 172007 164087 165509 NC_060941.1 CM021584.2 99.93 True indel: indel (<= 5bp) 172009 174708 165510 168209 NC_060941.1 CM021584.2 99.74 True indel: indel (<= 5bp) 174711 176849 168210 170348 NC_060941.1 CM021584.2 99.81 True indel: indel (<= 5bp) 176850 179236 170350 172736 NC_060941.1 CM021584.2 99.96 True local misassembly 181141 181756 172737 173352 NC_060941.1 CM021584.2 96.1 True local misassembly 183228 184237 174068 175077 NC_060941.1 CM021584.2 95.15 True local misassembly 184998 198134 175110 188246 NC_060941.1 CM021584.2 99.73 True local misassembly 199213 210245 188966 199998 NC_060941.1 CM021584.2 99.86 True local misassembly 210246 213912 200187 203853 NC_060941.1 CM021584.2 99.81 True indel: indel (> 5bp) 213913 214796 203923 204806 NC_060941.1 CM021584.2 99.89 True local misassembly 215460 219854 206274 210668 NC_060941.1 CM021584.2 99.86 True local misassembly 219915 224940 210892 215917 NC_060941.1 CM021584.2 99.88 True indel: indel (> 5bp) 224941 228867 215949 219875 NC_060941.1 CM021584.2 99.72 True indel: indel (<= 5bp) 228868 232396 219879 223407 NC_060941.1 CM021584.2 99.83 True local misassembly 235536 236445 223408 224317 NC_060941.1 CM021584.2 99.89 True local misassembly 236660 239567 224318 227225 NC_060941.1 CM021584.2 100.0 True indel: indel (> 5bp) 239593 250452 227226 238085 NC_060941.1 CM021584.2 99.82 True indel: indel (> 5bp) 250866 251856 238544 239534 NC_060941.1 CM021584.2 99.6 True indel: indel (<= 5bp) 251857 252714 239537 240394 NC_060941.1 CM021584.2 99.77 True indel: indel (> 5bp) 252777 254117 240395 241735 NC_060941.1 CM021584.2 100.0 True local misassembly 254309 255598 241736 243025 NC_060941.1 CM021584.2 99.61 True indel: indel (> 5bp) 255661 256699 243026 244064 NC_060941.1 CM021584.2 99.81 True indel: indel (<= 5bp) 256700 259915 244066 247281 NC_060941.1 CM021584.2 99.94 True indel: indel (> 5bp) 259952 260958 247282 248288 NC_060941.1 CM021584.2 99.5 True indel: indel (> 5bp) 261031 264384 248289 251642 NC_060941.1 CM021584.2 99.94 True local misassembly 268376 268906 252394 252924 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 268907 269472 252926 253491 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 269474 270017 253492 254035 NC_060941.1 CM021584.2 99.63 True indel: indel (<= 5bp) 270018 273947 254037 257966 NC_060941.1 CM021584.2 99.87 True local misassembly 274532 276396 257967 259831 NC_060941.1 CM021584.2 99.62 True local misassembly 278863 283374 262329 266955 NC_060941.1 CM021584.2 97.21 True local misassembly 283874 371247 267338 356053 NC_060941.1 CM021584.2 96.92 True indel: indel (> 5bp) 371440 727332 356297 712721 NC_060941.1 CM021584.2 99.75 True local misassembly 727698 729110 713936 715348 NC_060941.1 CM021584.2 99.79 True indel: indel (> 5bp) 729185 730468 715403 716686 NC_060941.1 CM021584.2 99.84 True indel: indel (> 5bp) 730581 731299 716751 717469 NC_060941.1 CM021584.2 100.0 True indel: indel (> 5bp) 731320 732789 717470 718939 NC_060941.1 CM021584.2 99.73 True indel: stretch of mismatches 732822 734264 718972 720414 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 734265 735637 720416 721788 NC_060941.1 CM021584.2 99.78 True indel: indel (<= 5bp) 735638 739821 721790 725973 NC_060941.1 CM021584.2 99.88 True indel: indel (> 5bp) 739822 740773 725980 726931 NC_060941.1 CM021584.2 99.58 True indel: indel (<= 5bp) 740774 742606 726934 728766 NC_060941.1 CM021584.2 99.73 True indel: indel (<= 5bp) 742608 747256 728767 733415 NC_060941.1 CM021584.2 99.87 True indel: indel (<= 5bp) 747257 749300 733420 735463 NC_060941.1 CM021584.2 99.95 True indel: indel (<= 5bp) 749302 757641 735464 743803 NC_060941.1 CM021584.2 99.95 True indel: indel (<= 5bp) 757643 758549 743804 744710 NC_060941.1 CM021584.2 99.56 True indel: indel (<= 5bp) 758743 759735 744903 745895 NC_060941.1 CM021584.2 100.0 True indel: indel (> 5bp) 759748 762015 745896 748163 NC_060941.1 CM021584.2 99.82 True indel: indel (<= 5bp) 762018 770501 748164 756647 NC_060941.1 CM021584.2 99.69 True indel: indel (<= 5bp) 770502 772089 756653 758240 NC_060941.1 CM021584.2 99.94 True indel: indel (<= 5bp) 772091 775983 758241 762133 NC_060941.1 CM021584.2 99.82 True indel: indel (> 5bp) 775992 780448 762134 766590 NC_060941.1 CM021584.2 99.93 True indel: indel (> 5bp) 780508 781241 766591 767324 NC_060941.1 CM021584.2 99.86 True indel: indel (<= 5bp) 781242 792991 767326 779075 NC_060941.1 CM021584.2 99.99 True indel: indel (> 5bp) 793316 794746 779430 780860 NC_060941.1 CM021584.2 99.37 True indel: indel (> 5bp) 795181 796979 781278 783076 NC_060941.1 CM021584.2 99.83 True local misassembly 797586 799791 783669 785874 NC_060941.1 CM021584.2 99.91 True local misassembly 801042 806230 785875 791063 NC_060941.1 CM021584.2 99.79 True indel: indel (<= 5bp) 806231 808322 791065 793156 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 808323 812044 793161 796882 NC_060941.1 CM021584.2 99.73 True indel: indel (<= 5bp) 812045 813080 796888 797923 NC_060941.1 CM021584.2 99.9 True indel: indel (<= 5bp) 813081 817333 797925 802177 NC_060941.1 CM021584.2 99.65 True indel: indel (<= 5bp) 817334 818432 802183 803281 NC_060941.1 CM021584.2 99.73 True indel: indel (<= 5bp) 818438 819947 803282 804791 NC_060941.1 CM021584.2 99.14 True indel: indel (<= 5bp) 819949 820479 804792 805322 NC_060941.1 CM021584.2 99.25 True indel: stretch of mismatches 820771 821590 805614 806433 NC_060941.1 CM021584.2 99.51 True indel: indel (<= 5bp) 821591 824843 806439 809691 NC_060941.1 CM021584.2 99.63 True indel: indel (<= 5bp) 824845 825735 809692 810582 NC_060941.1 CM021584.2 99.78 True indel: indel (<= 5bp) 825736 826382 810585 811231 NC_060941.1 CM021584.2 100.0 True local misassembly 826689 827662 811424 812397 NC_060941.1 CM021584.2 98.56 True local misassembly 827834 830704 812398 815268 NC_060941.1 CM021584.2 99.83 True indel: indel (> 5bp) 830723 832247 815269 816793 NC_060941.1 CM021584.2 99.67 True indel: indel (> 5bp) 832657 833687 817212 818242 NC_060941.1 CM021584.2 99.32 True local misassembly 836394 837893 818792 820291 NC_060941.1 CM021584.2 99.67 True indel: indel (<= 5bp) 837894 838949 820294 821349 NC_060941.1 CM021584.2 99.34 True local misassembly 839208 845348 822703 828843 NC_060941.1 CM021584.2 99.9 True indel: indel (> 5bp) 845349 847780 828854 831285 NC_060941.1 CM021584.2 99.96 True indel: indel (<= 5bp) 847781 861206 831287 844712 NC_060941.1 CM021584.2 99.93 True indel: indel (<= 5bp) 861211 862582 844713 846084 NC_060941.1 CM021584.2 99.93 True indel: indel (<= 5bp) 862586 863162 846085 846661 NC_060941.1 CM021584.2 99.65 True indel: indel (<= 5bp) 863163 864815 846663 848315 NC_060941.1 CM021584.2 99.7 True indel: indel (<= 5bp) 864817 865627 848316 849126 NC_060941.1 CM021584.2 99.63 True indel: indel (> 5bp) 865628 867016 849153 850541 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 867194 867873 850724 851403 NC_060941.1 CM021584.2 99.56 True indel: indel (> 5bp) 868144 870008 851668 853532 NC_060941.1 CM021584.2 99.95 True indel: indel (> 5bp) 870009 871822 853553 855366 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 871823 873606 855368 857151 NC_060941.1 CM021584.2 99.89 True indel: indel (> 5bp) 873636 875439 857152 858955 NC_060941.1 CM021584.2 99.89 True indel: indel (<= 5bp) 875441 877573 858956 861088 NC_060941.1 CM021584.2 99.95 True local misassembly 878961 879968 861089 862096 NC_060941.1 CM021584.2 100.0 True indel: indel (> 5bp) 880446 880947 862544 863045 NC_060941.1 CM021584.2 99.8 True indel: indel (> 5bp) 881039 882831 863122 864914 NC_060941.1 CM021584.2 100.0 True indel: indel (<= 5bp) 882834 886011 864915 868092 NC_060941.1 CM021584.2 99.94 True indel: indel (> 5bp) 886020 886586 868093 868659 NC_060941.1 CM021584.2 99.65 True indel: stretch of mismatches 886752 893474 868825 875547 NC_060941.1 CM021584.2 99.97 True indel: indel (> 5bp) 893475 902009 875613 884147 NC_060941.1 CM021584.2 99.91 True indel: indel (<= 5bp) 902010 904053 884149 886192 NC_060941.1 CM021584.2 99.9 True indel: indel (<= 5bp) 904055 908709 886193 890847 NC_060941.1 CM021584.2 99.91 True indel: indel (> 5bp) 908710 910130 890859 892279 NC_060941.1 CM021584.2 99.3 True indel: indel (> 5bp) 910137 911372 892280 893515 NC_060941.1 CM021584.2 99.68 True indel: indel (<= 5bp) 911376 919282 893516 901422 NC_060941.1 CM021584.2 99.79 True indel: indel (> 5bp) 919324 922449 901423 904548 NC_060941.1 CM021584.2 99.94 True indel: indel (<= 5bp) 922451 922981 904549 905079 NC_060941.1 CM021584.2 99.44 True local misassembly 923848 930962 905080 912194 NC_060941.1 CM021584.2 99.9 True indel: indel (> 5bp) 931350 934988 912545 916183 NC_060941.1 CM021584.2 99.64 True indel: indel (> 5bp) 934996 941139 916184 922327 NC_060941.1 CM021584.2 99.69 True local misassembly 941756 942648 922328 923220 NC_060941.1 CM021584.2 98.32 True indel: indel (> 5bp) 942649 943409 923244 924004 NC_060941.1 CM021584.2 99.34 True indel: indel (> 5bp) 943410 945969 924055 926614 NC_060941.1 CM021584.2 99.8 True local misassembly 946765 949626 927411 930272 NC_060941.1 CM021584.2 99.69 True indel: indel (<= 5bp) 949628 950190 930273 930835 NC_060941.1 CM021584.2 99.82 True indel: indel (<= 5bp) 950192 950820 930836 931464 NC_060941.1 CM021584.2 99.68 True indel: indel (<= 5bp) 950823 951381 931465 932023 NC_060941.1 CM021584.2 99.64 True relocation, inconsistency = -11158 952028 953611 943828 945411 NC_060941.1 CM021584.2 99.81 True indel: indel (<= 5bp) 953614 958635 945412 950433 NC_060941.1 CM021584.2 99.66 True local misassembly 958636 959564 950609 951537 NC_060941.1 CM021584.2 99.68 True indel: indel (<= 5bp) 959566 961975 951538 953947 NC_060941.1 CM021584.2 99.92 True indel: indel (<= 5bp) 961976 963107 953949 955080 NC_060941.1 CM021584.2 99.82 True indel: indel (<= 5bp) 963110 964422 955081 956393 NC_060941.1 CM021584.2 99.77 True indel: indel (<= 5bp) 964424 966174 956394 958144 NC_060941.1 CM021584.2 99.94 True indel: indel (<= 5bp) 966178 969499 958145 961466 NC_060941.1 CM021584.2 99.88 True indel: indel (<= 5bp) 969501 974828 961467 966794 NC_060941.1 CM021584.2 99.81 True indel: indel (> 5bp) 975259 979069 967235 971045 NC_060941.1 CM021584.2 99.97 True indel: indel (> 5bp) 979279 981235 971243 973199 NC_060941.1 CM021584.2 99.74 True indel: indel (<= 5bp) 981241 983973 973200 975932 NC_060941.1 CM021584.2 99.78 True indel: indel (<= 5bp) 983976 991847 975933 983804 NC_060941.1 CM021584.2 99.83 True indel: indel (<= 5bp) 992257 992808 984215 984766 NC_060941.1 CM021584.2 99.82 True indel: indel (<= 5bp) 992913 995199 984874 987160 NC_060941.1 CM021584.2 99.91 True indel: indel (> 5bp) 995200 999342 987169 991311 NC_060941.1 CM021584.2 99.78 True indel: indel (> 5bp) 999664 1000554 991695 992585 NC_060941.1 CM021584.2 99.89 True indel: indel (<= 5bp) 1000855 1003122 992888 995155 NC_060941.1 CM021584.2 99.6 True local misassembly 1004075 1180179 996286 1170418 NC_060941.1 CM021584.2 97.76 True local misassembly 1180428 3216369 1170755 3211827 NC_060941.1 CM021584.2 99.23 True local misassembly 3216964 3862516 3211829 3857440 NC_060941.1 CM021584.2 99.62 True indel: indel (> 5bp) 3862691 4799000 3857695 4794574 NC_060941.1 CM021584.2 99.52 True indel: indel (<= 5bp) 4798999 5133924 4794575 5128822 NC_060941.1 CM021584.2 99.45 True local misassembly 5133801 8315956 5128905 8308296 NC_060941.1 CM021584.2 99.61 True local misassembly 8315542 8652929 8312554 8650049 NC_060941.1 CM021584.2 99.74 True indel: indel (<= 5bp) 8652986 8849833 8650101 8845907 NC_060941.1 CM021584.2 99.19 True indel: indel (<= 5bp) 8849872 10754465 8845945 10750339 NC_060941.1 CM021584.2 99.8 True indel: indel (> 5bp) 10754714 11416565 10750570 11412154 NC_060941.1 CM021584.2 99.78 True local misassembly 11417236 11602679 11412216 11597980 NC_060941.1 CM021584.2 99.63 True local misassembly 11602985 12559147 11598156 12546810 NC_060941.1 CM021584.2 99.01 True indel: indel (> 5bp) 12559369 12930010 12547020 12917688 NC_060941.1 CM021584.2 99.74 True indel: indel (> 5bp) 12930112 13689989 12917822 13677333 NC_060941.1 CM021584.2 99.78 True local misassembly 13691680 16716377 13678528 16706151 NC_060941.1 CM021584.2 99.6 True relocation, inconsistency = 25713758 42430198 42431240 16706214 16707257 NC_060941.1 CM021584.2 95.7 True local misassembly 42437948 42438684 16710551 16711287 NC_060941.1 CM021584.2 95.39 True local misassembly 42439945 42441168 16712523 16713746 NC_060941.1 CM021584.2 96.0 True relocation, inconsistency = -25674146 16767161 18398164 16713885 18355280 NC_060941.1 CM021584.2 99.08 True relocation, inconsistency = 24041642 42439945 42441168 18356642 18355419 NC_060941.1 CM021584.2 95.92 True local misassembly 42437948 42438684 18358614 18357878 NC_060941.1 CM021584.2 95.39 True local misassembly 42430198 42431240 18362951 18361908 NC_060941.1 CM021584.2 95.7 True relocation, inconsistency = 23419015 18448887 19011120 18363014 18924078 NC_060941.1 CM021584.2 99.35 True relocation, inconsistency = 77626 19088747 19132881 18924079 18968180 NC_060941.1 CM021584.2 99.8 True relocation, inconsistency = -48588 19084294 20933405 18968181 20822529 NC_060941.1 CM021584.2 99.48 True indel: indel (> 5bp) 20933922 21919463 20823004 21808547 NC_060941.1 CM021584.2 99.77 True indel: stretch of mismatches 21919884 21920548 21808968 21809632 NC_060941.1 CM021584.2 99.1 True local misassembly 21921431 22093285 21810514 21981535 NC_060941.1 CM021584.2 98.49 True indel: indel (> 5bp) 22093460 22202120 21981700 22089687 NC_060941.1 CM021584.2 98.6 True indel: indel (> 5bp) 22202375 22360612 22089932 22248073 NC_060941.1 CM021584.2 99.42 True local misassembly 22361721 23049773 22248074 22941908 NC_060941.1 CM021584.2 98.53 True relocation, inconsistency = 47100 23096874 23521281 22941909 23366321 NC_060941.1 CM021584.2 99.79 True local misassembly 23524856 23530834 23366322 23372304 NC_060941.1 CM021584.2 99.05 True relocation, inconsistency = -9520 23521315 23710479 23372305 23561477 NC_060941.1 CM021584.2 99.32 True relocation, inconsistency = 20230 23730834 23734570 23561602 23565338 NC_060941.1 CM021584.2 99.12 True indel: indel (<= 5bp) 23734571 23741198 23565340 23571967 NC_060941.1 CM021584.2 98.46 True indel: indel (<= 5bp) 23741200 23742849 23571968 23573617 NC_060941.1 CM021584.2 98.36 True relocation, inconsistency = -14285 23742850 23743766 23587903 23588819 NC_060941.1 CM021584.2 99.45 True local misassembly 23743767 23780732 23592391 23629356 NC_060941.1 CM021584.2 99.15 True indel: indel (<= 5bp) 23780734 23809688 23629357 23658311 NC_060941.1 CM021584.2 99.76 True indel: indel (<= 5bp) 23809690 23812375 23658312 23660997 NC_060941.1 CM021584.2 99.18 True indel: indel (<= 5bp) 23812377 23816825 23660998 23665446 NC_060941.1 CM021584.2 99.39 True indel: stretch of mismatches 23817252 23841116 23665873 23689737 NC_060941.1 CM021584.2 99.03 True indel: indel (<= 5bp) 23841119 23841750 23689738 23690369 NC_060941.1 CM021584.2 98.73 True indel: indel (> 5bp) 23841757 23845851 23690397 23694491 NC_060941.1 CM021584.2 99.54 True indel: indel (<= 5bp) 23845852 23866094 23694494 23714736 NC_060941.1 CM021584.2 99.39 True indel: indel (<= 5bp) 23866096 23870851 23714737 23719492 NC_060941.1 CM021584.2 99.35 True indel: indel (<= 5bp) 23870852 23873229 23719494 23721871 NC_060941.1 CM021584.2 99.07 True indel: indel (<= 5bp) 23873230 23876916 23721873 23725559 NC_060941.1 CM021584.2 98.4 True indel: indel (<= 5bp) 23876917 23880365 23725564 23729012 NC_060941.1 CM021584.2 98.67 True indel: indel (<= 5bp) 23880366 23880907 23729014 23729555 NC_060941.1 CM021584.2 98.83 True fake: not a misassembly (possible transposable element) 24038737 24043374 23729556 23734193 NC_060941.1 CM021584.2 99.31 True fake: not a misassembly (possible transposable element) 23891417 24043374 23735647 23887427 NC_060941.1 CM021584.2 98.19 True indel: indel (<= 5bp) 24043803 24094667 23887859 23937883 NC_060941.1 CM021584.2 95.0 True relocation, inconsistency = 80458 24178349 24324900 23941107 24087660 NC_060941.1 CM021584.2 99.48 True relocation, inconsistency = 121317 24446218 24447619 24087661 24089062 NC_060941.1 CM021584.2 96.28 True relocation, inconsistency = -110461 24337159 24369113 24089063 24121016 NC_060941.1 CM021584.2 99.71 True relocation, inconsistency = -118601 24250513 24307265 24121017 24178272 NC_060941.1 CM021584.2 98.66 True local misassembly 24301836 24324900 24178273 24201336 NC_060941.1 CM021584.2 98.77 True relocation, inconsistency = -16261 24308640 24311610 24201337 24204160 NC_060941.1 CM021584.2 96.53 True relocation, inconsistency = 134719 24446330 24464658 24204161 24222825 NC_060941.1 CM021584.2 97.85 True local misassembly 24469918 24497030 24222826 24249770 NC_060941.1 CM021584.2 98.62 True relocation, inconsistency = -13572 24483459 24502282 24249771 24268593 NC_060941.1 CM021584.2 99.34 True relocation, inconsistency = -13570 24488713 24508883 24268594 24288764 NC_060941.1 CM021584.2 99.53 True relocation, inconsistency = 16282 24525166 24552767 24288765 24316366 NC_060941.1 CM021584.2 99.77 True fake: not a misassembly (possible transposable element) 24561255 24565506 24316367 24320619 NC_060941.1 CM021584.2 99.44 True fake: not a misassembly (possible transposable element) 24554308 24559560 24320620 24325872 NC_060941.1 CM021584.2 99.65 True local misassembly 24556846 24572767 24325873 24341796 NC_060941.1 CM021584.2 99.65 True relocation, inconsistency = 11202 24583970 24600067 24341797 24357894 NC_060941.1 CM021584.2 99.91 True local misassembly 24594638 24629518 24357895 24392775 NC_060941.1 CM021584.2 99.78 True relocation, inconsistency = 64992 24694511 24700370 24392776 24398635 NC_060941.1 CM021584.2 99.84 True relocation, inconsistency = 16290 24716661 24766652 24398636 24448794 NC_060941.1 CM021584.2 99.5 True local misassembly 24761223 24764356 24448795 24451928 NC_060941.1 CM021584.2 99.84 True relocation, inconsistency = 8145 24772502 24782942 24451929 24462369 NC_060941.1 CM021584.2 99.86 True relocation, inconsistency = -8145 24774798 24780646 24462370 24468218 NC_060941.1 CM021584.2 99.86 True relocation, inconsistency = -13575 24767072 24797513 24468219 24498660 NC_060941.1 CM021584.2 99.89 True relocation, inconsistency = 13575 24811089 24813226 24498661 24500798 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = -97573 24715654 24728809 24500799 24513954 NC_060941.1 CM021584.2 99.77 True relocation, inconsistency = 203290 24932100 24937948 24513955 24519803 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = -141012 24796937 24803357 24519804 24526223 NC_060941.1 CM021584.2 99.82 True local misassembly 24808788 24813226 24526224 24530662 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = -97573 24715654 24728809 24530663 24543818 NC_060941.1 CM021584.2 99.77 True relocation, inconsistency = 127438 24856248 24862096 24543819 24549667 NC_060941.1 CM021584.2 99.86 True relocation, inconsistency = -29865 24832232 24904403 24549668 24621839 NC_060941.1 CM021584.2 99.94 True relocation, inconsistency = -295600 24608804 24614294 24621840 24627330 NC_060941.1 CM021584.2 99.71 True relocation, inconsistency = 309007 24923302 24926016 24627331 24630045 NC_060941.1 CM021584.2 99.86 True relocation, inconsistency = -138129 24796224 24801653 24638382 24643811 NC_060941.1 CM021584.2 99.82 True relocation, inconsistency = 124722 24926376 24949279 24643812 24666714 NC_060941.1 CM021584.2 99.92 True indel: indel (> 5bp) 24949526 24957459 24666955 24674888 NC_060941.1 CM021584.2 100.0 True local misassembly 24960174 24962382 24674889 24677096 NC_060941.1 CM021584.2 99.93 True relocation, inconsistency = -132866 24829517 24884807 24677097 24732387 NC_060941.1 CM021584.2 99.89 True local misassembly 24887523 24959249 24732388 24804282 NC_060941.1 CM021584.2 99.63 True relocation, inconsistency = 57014 25016264 25017673 24804283 24805692 NC_060941.1 CM021584.2 99.87 True relocation, inconsistency = 54300 25071974 25102431 24805693 24836152 NC_060941.1 CM021584.2 99.87 True local misassembly 25105629 25108999 24836635 24840005 NC_060941.1 CM021584.2 99.9 True local misassembly 25114430 25119202 24840006 24844778 NC_060941.1 CM021584.2 99.8 True indel: stretch of mismatches 25119203 25120844 24844779 24846419 NC_060941.1 CM021584.2 99.77 True relocation, inconsistency = -208887 24911958 24920527 24846420 24855155 NC_060941.1 CM021584.2 97.86 True relocation, inconsistency = 181906 25102434 25105225 24855156 24857947 NC_060941.1 CM021584.2 99.7 True relocation, inconsistency = 198019 25325305 25335760 24880008 24890463 NC_060941.1 CM021584.2 99.75 True relocation, inconsistency = -10860 25324901 25333029 24890464 24898592 NC_060941.1 CM021584.2 99.78 True relocation, inconsistency = -13575 25319455 25321198 24898593 24900336 NC_060941.1 CM021584.2 99.86 True relocation, inconsistency = -13575 25307624 25316755 24900337 24909468 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = 24435 25341191 25346868 24909469 24915146 NC_060941.1 CM021584.2 99.84 True relocation, inconsistency = -8312 25338877 25352118 24915467 24928708 NC_060941.1 CM021584.2 99.71 True relocation, inconsistency = -13575 25338877 25354085 24929042 24944250 NC_060941.1 CM021584.2 99.8 True relocation, inconsistency = -149158 25205358 25211021 24944681 24950344 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = 162733 25373767 25402186 24950357 24978776 NC_060941.1 CM021584.2 99.93 True local misassembly 25405922 25411309 24982512 24987899 NC_060941.1 CM021584.2 99.83 True relocation, inconsistency = 8143 25424805 25434156 24993252 25002603 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = -8145 25435665 25445723 25012257 25022315 NC_060941.1 CM021584.2 99.86 True local misassembly 25447366 25456584 25023958 25033176 NC_060941.1 CM021584.2 99.83 True local misassembly 25462437 25466367 25039029 25042959 NC_060941.1 CM021584.2 99.91 True indel: stretch of mismatches 25466368 25475592 25042960 25052184 NC_060941.1 CM021584.2 99.91 True local misassembly 25501761 25508138 25078352 25084729 NC_060941.1 CM021584.2 99.95 True relocation, inconsistency = 132039 25687010 25700950 25131562 25145502 NC_060941.1 CM021584.2 99.87 True local misassembly 25698236 25699234 25145503 25146501 NC_060941.1 CM021584.2 99.8 True local misassembly 25693805 25701452 25146502 25154149 NC_060941.1 CM021584.2 99.9 True local misassembly 25696023 25699167 25154150 25157294 NC_060941.1 CM021584.2 99.82 True indel: stretch of mismatches 25699168 25706076 25157295 25164203 NC_060941.1 CM021584.2 99.93 True local misassembly 25703664 25710026 25164506 25170869 NC_060941.1 CM021584.2 99.94 True indel: stretch of mismatches 25710027 25719646 25170870 25180489 NC_060941.1 CM021584.2 99.96 True local misassembly 25721605 25730612 25182448 25191455 NC_060941.1 CM021584.2 99.92 True relocation, inconsistency = 24936 25759687 25762401 25195594 25198308 NC_060941.1 CM021584.2 99.93 True local misassembly 25759687 25768959 25198309 25207581 NC_060941.1 CM021584.2 99.9 True relocation, inconsistency = 1609136 27378096 27380236 25207582 25209722 NC_060941.1 CM021584.2 97.99 True relocation, inconsistency = -1383108 25997129 26012029 25209723 25224623 NC_060941.1 CM021584.2 99.93 True local misassembly 26014745 26017878 25224624 25227757 NC_060941.1 CM021584.2 99.9 True relocation, inconsistency = -215503 25802376 25815794 25227758 25240842 NC_060941.1 CM021584.2 97.41 True local misassembly 25810365 25813170 25240843 25243648 NC_060941.1 CM021584.2 97.95 True local misassembly 25807741 25819558 25243649 25255299 NC_060941.1 CM021584.2 98.55 True indel: stretch of mismatches 25819559 25821022 25255300 25256763 NC_060941.1 CM021584.2 99.92 True indel: stretch of mismatches 25821023 25826391 25256764 25262132 NC_060941.1 CM021584.2 99.83 True local misassembly 25821023 25839418 25262194 25280589 NC_060941.1 CM021584.2 99.96 True local misassembly 25836704 25838517 25280590 25282403 NC_060941.1 CM021584.2 99.92 True local misassembly 25833088 25839418 25282404 25288734 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = 217883 26062949 26066287 25294382 25297720 NC_060941.1 CM021584.2 99.96 True indel: stretch of mismatches 26066288 26085841 25297721 25317274 NC_060941.1 CM021584.2 99.95 True local misassembly 26080842 26093271 25317705 25330134 NC_060941.1 CM021584.2 99.94 True relocation, inconsistency = -207023 25898254 25907676 25342140 25351562 NC_060941.1 CM021584.2 99.89 True relocation, inconsistency = -1363120 24544557 24550239 25351563 25357080 NC_060941.1 CM021584.2 96.81 True relocation, inconsistency = 1564891 26118266 26123201 25360216 25365150 NC_060941.1 CM021584.2 99.88 True local misassembly 26120487 26123201 25365151 25367865 NC_060941.1 CM021584.2 99.88 True local misassembly 26126727 26131830 25368676 25373779 NC_060941.1 CM021584.2 99.88 True local misassembly 26137684 26142822 25374203 25379341 NC_060941.1 CM021584.2 99.92 True relocation, inconsistency = -439158 25731164 25739045 25406841 25414554 NC_060941.1 CM021584.2 97.79 True relocation, inconsistency = 8312 25748827 25756136 25416024 25423333 NC_060941.1 CM021584.2 99.88 True fake: not a misassembly (possible transposable element) 25998874 26005847 25429183 25436156 NC_060941.1 CM021584.2 99.86 True fake: not a misassembly (possible transposable element) 25770131 25775677 25437328 25442874 NC_060941.1 CM021584.2 99.89 True relocation, inconsistency = 220598 25998874 26005626 25445473 25452225 NC_060941.1 CM021584.2 99.9 True relocation, inconsistency = -223313 25782314 25794146 25452226 25464058 NC_060941.1 CM021584.2 99.85 True relocation, inconsistency = 247413 26041979 26047408 25464478 25469907 NC_060941.1 CM021584.2 99.79 True local misassembly 26041979 26054374 25469908 25482471 NC_060941.1 CM021584.2 98.5 True relocation, inconsistency = -228743 25825632 25826810 25482472 25483650 NC_060941.1 CM021584.2 98.09 True local misassembly 25824096 25836491 25483651 25496214 NC_060941.1 CM021584.2 98.52 True relocation, inconsistency = -10860 25825632 25835185 25496215 25505768 NC_060941.1 CM021584.2 99.96 True indel: stretch of mismatches 25835186 25837670 25505769 25508253 NC_060941.1 CM021584.2 99.94 True fake: not a misassembly (possible transposable element) 25829526 25836491 25508254 25515219 NC_060941.1 CM021584.2 99.89 True fake: not a misassembly (possible transposable element) 25861476 25873388 25525269 25537181 NC_060941.1 CM021584.2 99.91 True local misassembly 25876104 25878530 25537182 25539608 NC_060941.1 CM021584.2 99.86 True local misassembly 25873101 25880818 25539609 25547326 NC_060941.1 CM021584.2 99.87 True relocation, inconsistency = 489217 26414583 26428295 25591874 25605588 NC_060941.1 CM021584.2 99.65 True relocation, inconsistency = -592218 25861476 25868870 25630987 25638381 NC_060941.1 CM021584.2 99.9 True relocation, inconsistency = -1044784 24824087 24837242 25638382 25651537 NC_060941.1 CM021584.2 99.88 True indel: stretch of mismatches 24837243 24845420 25651538 25659715 NC_060941.1 CM021584.2 99.68 True relocation, inconsistency = 1362956 26208377 26223601 25659716 25674940 NC_060941.1 CM021584.2 99.94 True local misassembly 26246387 26262542 25697726 25713881 NC_060941.1 CM021584.2 99.95 True relocation, inconsistency = 21720 26284263 26306064 25713882 25735683 NC_060941.1 CM021584.2 99.94 True relocation, inconsistency = -24435 26284263 26305982 25738317 25760036 NC_060941.1 CM021584.2 99.88 True relocation, inconsistency = 27150 26333133 26349930 25760037 25776834 NC_060941.1 CM021584.2 99.83 True relocation, inconsistency = -35295 26314636 26351710 25776835 25813909 NC_060941.1 CM021584.2 99.85 True relocation, inconsistency = 62445 26414156 26420893 25813910 25820648 NC_060941.1 CM021584.2 99.63 True relocation, inconsistency = -54299 26366595 26369641 25820649 25823695 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = 19005 26388647 26401089 25823696 25836138 NC_060941.1 CM021584.2 99.73 True relocation, inconsistency = -10860 26390230 26400498 25836139 25846407 NC_060941.1 CM021584.2 99.87 True relocation, inconsistency = -32580 26367919 26373172 25846408 25851661 NC_060941.1 CM021584.2 99.92 True relocation, inconsistency = -29865 26343308 26350636 25851662 25858990 NC_060941.1 CM021584.2 99.73 True relocation, inconsistency = 38010 26388647 26400498 25858991 25870842 NC_060941.1 CM021584.2 99.85 True relocation, inconsistency = -8145 26392863 26397607 25871352 25876096 NC_060941.1 CM021584.2 99.71 True local misassembly 26394893 26425013 25876097 25906219 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = 10860 26435874 26454878 25906220 25925224 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = -13575 26441304 26457593 25925225 25941513 NC_060941.1 CM021584.2 99.91 True relocation, inconsistency = -54298 26403723 26430443 25941941 25967655 NC_060941.1 CM021584.2 95.85 True relocation, inconsistency = 37842 26468286 26487073 25967656 25986443 NC_060941.1 CM021584.2 99.92 True relocation, inconsistency = 54133 26541207 26546483 25986444 25991720 NC_060941.1 CM021584.2 99.96 True relocation, inconsistency = -341252 26205662 26208376 25992151 25994865 NC_060941.1 CM021584.2 99.84 True relocation, inconsistency = 287119 26495496 26517943 25994866 26017313 NC_060941.1 CM021584.2 99.93 True local misassembly 26520659 26523803 26017314 26020458 NC_060941.1 CM021584.2 99.82 True local misassembly 26521089 26539340 26020459 26038709 NC_060941.1 CM021584.2 98.12 True indel: stretch of mismatches 26539341 26543713 26038710 26043082 NC_060941.1 CM021584.2 99.7 True relocation, inconsistency = -43440 26500274 26503640 26043083 26046282 NC_060941.1 CM021584.2 99.16 True local misassembly 26500926 26535826 26046283 26081183 NC_060941.1 CM021584.2 99.91 True local misassembly 26538542 26541256 26081184 26083898 NC_060941.1 CM021584.2 99.82 True relocation, inconsistency = 45988 26587639 26595185 26084293 26091673 NC_060941.1 CM021584.2 97.56 True relocation, inconsistency = -51417 26544199 26577506 26092104 26125410 NC_060941.1 CM021584.2 99.88 True local misassembly 26583367 26599042 26125841 26141516 NC_060941.1 CM021584.2 97.73 True relocation, inconsistency = 19005 26618494 26628195 26141963 26151664 NC_060941.1 CM021584.2 99.89 True relocation, inconsistency = -13575 26614621 26626009 26151665 26163053 NC_060941.1 CM021584.2 99.78 True local misassembly 26623295 26626416 26163054 26166175 NC_060941.1 CM021584.2 99.83 True relocation, inconsistency = -135415 26491002 26497780 26166176 26172954 NC_060941.1 CM021584.2 99.72 True relocation, inconsistency = 127270 26625482 26657630 26173386 26205534 NC_060941.1 CM021584.2 99.79 True relocation, inconsistency = 8145 26666206 26676485 26205965 26216244 NC_060941.1 CM021584.2 98.97 True local misassembly 26671390 26680702 26216245 26225215 NC_060941.1 CM021584.2 98.83 True local misassembly 26685282 26706908 26225216 26246675 NC_060941.1 CM021584.2 98.72 True local misassembly 26712340 26750179 26246676 26284517 NC_060941.1 CM021584.2 98.64 True local misassembly 26748314 26781444 26284518 26318320 NC_060941.1 CM021584.2 96.0 True relocation, inconsistency = -12906 26768539 26770230 26318321 26320012 NC_060941.1 CM021584.2 98.36 True relocation, inconsistency = -28703 26741528 26772835 26320013 26351318 NC_060941.1 CM021584.2 99.69 True relocation, inconsistency = -26107 26746729 26757162 26351319 26361799 NC_060941.1 CM021584.2 97.98 True relocation, inconsistency = 10362 26767525 26797812 26361800 26391922 NC_060941.1 CM021584.2 96.42 True local misassembly 26800698 26819004 26391923 26410567 NC_060941.1 CM021584.2 97.25 True local misassembly 26813575 26816626 26410568 26413620 NC_060941.1 CM021584.2 98.15 True local misassembly 26813914 26835440 26413621 26434981 NC_060941.1 CM021584.2 98.7 True relocation, inconsistency = 7977 26843721 26853619 26435285 26445158 NC_060941.1 CM021584.2 98.72 True relocation, inconsistency = -16147 26837473 27050115 26445159 26656462 NC_060941.1 CM021584.2 97.35 True relocation, inconsistency = 90445 27140561 27180722 26656463 26696460 NC_060941.1 CM021584.2 98.41 True relocation, inconsistency = 7809 27188532 27190429 26696461 26698525 NC_060941.1 CM021584.2 96.89 True relocation, inconsistency = 16128 27206558 27237588 26698526 26729554 NC_060941.1 CM021584.2 99.81 True local misassembly 27240644 27258558 26729555 26747469 NC_060941.1 CM021584.2 99.06 True relocation, inconsistency = -16289 27242270 27356937 26747470 26862137 NC_060941.1 CM021584.2 99.35 True local misassembly 27362367 27368850 26862138 26868621 NC_060941.1 CM021584.2 99.73 True relocation, inconsistency = -206041 27163038 27182911 26868850 26888890 NC_060941.1 CM021584.2 96.7 True relocation, inconsistency = 195521 27378433 27415321 26888891 26925945 NC_060941.1 CM021584.2 98.09 True local misassembly 27410226 27425733 26925946 26941453 NC_060941.1 CM021584.2 99.22 True local misassembly 27426247 27448106 26941454 26963314 NC_060941.1 CM021584.2 99.76 True relocation, inconsistency = -242173 27205934 27206557 26963315 26963938 NC_060941.1 CM021584.2 98.19 True relocation, inconsistency = 206718 27413276 27476222 26963939 27026884 NC_060941.1 CM021584.2 96.34 True relocation, inconsistency = -36338 27439885 27444980 27026885 27031979 NC_060941.1 CM021584.2 97.98 True relocation, inconsistency = -12401 27432580 27434688 27031980 27034088 NC_060941.1 CM021584.2 98.07 True local misassembly 27434856 27435970 27034089 27035203 NC_060941.1 CM021584.2 98.57 True indel: indel (<= 5bp) 27435972 27438518 27035204 27037750 NC_060941.1 CM021584.2 98.15 True indel: indel (<= 5bp) 27438520 27441872 27037751 27041103 NC_060941.1 CM021584.2 98.27 True local misassembly 27442044 27443652 27041104 27042712 NC_060941.1 CM021584.2 97.76 True indel: indel (<= 5bp) 27443653 27446275 27042714 27045336 NC_060941.1 CM021584.2 97.64 True relocation, inconsistency = -230968 27215527 27226406 27045556 27056262 NC_060941.1 CM021584.2 96.32 True relocation, inconsistency = 243689 27470115 27472311 27056282 27058478 NC_060941.1 CM021584.2 97.22 True local misassembly 27472654 27474836 27058484 27060666 NC_060941.1 CM021584.2 97.76 True local misassembly 27476215 27486738 27062215 27073244 NC_060941.1 CM021584.2 95.16 True relocation, inconsistency = 25687 27512426 27565230 27073245 27126049 NC_060941.1 CM021584.2 99.75 True relocation, inconsistency = -108662 27456569 27460668 27126050 27130149 NC_060941.1 CM021584.2 97.69 True local misassembly 27460836 27463819 27130150 27133133 NC_060941.1 CM021584.2 98.29 True indel: indel (<= 5bp) 27463821 27465931 27133134 27135244 NC_060941.1 CM021584.2 98.25 True local misassembly 27466099 27471149 27135245 27140295 NC_060941.1 CM021584.2 98.81 True local misassembly 27471318 27475437 27140296 27144415 NC_060941.1 CM021584.2 98.28 True indel: indel (<= 5bp) 27475438 27476209 27144417 27145188 NC_060941.1 CM021584.2 98.77 True relocation, inconsistency = -12400 27463810 27465931 27145189 27147310 NC_060941.1 CM021584.2 98.11 True local misassembly 27466099 27471149 27147311 27152361 NC_060941.1 CM021584.2 98.89 True local misassembly 27471474 27475437 27152517 27156480 NC_060941.1 CM021584.2 98.18 True indel: indel (<= 5bp) 27475438 27476209 27156482 27157253 NC_060941.1 CM021584.2 98.89 True relocation, inconsistency = -7137 27469073 27471149 27157254 27159330 NC_060941.1 CM021584.2 98.03 True local misassembly 27471318 27475437 27159331 27163450 NC_060941.1 CM021584.2 98.25 True indel: indel (<= 5bp) 27475438 27476209 27163452 27164223 NC_060941.1 CM021584.2 98.89 True relocation, inconsistency = -14948 27461262 27474836 27164224 27177629 NC_060941.1 CM021584.2 96.92 True relocation, inconsistency = 7475 27482312 27486893 27177630 27182211 NC_060941.1 CM021584.2 97.91 True local misassembly 27485168 27486117 27182348 27183297 NC_060941.1 CM021584.2 98.31 True local misassembly 27480684 27487430 27183298 27189877 NC_060941.1 CM021584.2 96.64 True relocation, inconsistency = 55462 27543088 27794624 27190073 27441659 NC_060941.1 CM021584.2 99.86 True local misassembly 27795198 27803812 27442257 27450871 NC_060941.1 CM021584.2 99.99 True local misassembly 27804756 29165416 27451790 28812472 NC_060941.1 CM021584.2 99.86 True local misassembly 29165598 31566528 28812538 31213490 NC_060941.1 CM021584.2 99.89 True inversion 31566529 31570254 31217218 31213491 NC_060941.1 CM021584.2 99.7 True inversion 31570255 37115721 31217219 36762587 NC_060941.1 CM021584.2 99.8 True indel: indel (<= 5bp) 37115767 42104409 36762637 41766244 NC_060941.1 CM021584.2 99.45 True local misassembly 42104955 42131492 41766789 41793281 NC_060941.1 CM021584.2 99.54 True local misassembly 42131094 42131666 41798816 41799388 NC_060941.1 CM021584.2 96.16 True local misassembly 42131061 42305512 41803170 41977575 NC_060941.1 CM021584.2 99.81 True indel: indel (> 5bp) 42305690 44098293 41977693 43770125 NC_060941.1 CM021584.2 99.83 True indel: stretch of mismatches 44098294 44157317 43770126 43828820 NC_060941.1 CM021584.2 97.51 True relocation, inconsistency = -43144 44114174 44205096 43828821 43919708 NC_060941.1 CM021584.2 98.96 True local misassembly 44208915 44828349 43919709 44539369 NC_060941.1 CM021584.2 99.79 True local misassembly 44828587 46369843 44539503 46080161 NC_060941.1 CM021584.2 99.72 True relocation, inconsistency = 11981 46381825 47154193 46080162 46852220 NC_060941.1 CM021584.2 99.72 True indel: indel (<= 5bp) 47154323 52585183 46852348 52283807 NC_060941.1 CM021584.2 99.75 True local misassembly 52585620 58006125 52284110 57707061 NC_060941.1 CM021584.2 99.81 True local misassembly 58007533 58031784 57709333 57733534 NC_060941.1 CM021584.2 99.46 True indel: stretch of mismatches 58031812 65991714 57733562 65698064 NC_060941.1 CM021584.2 99.79 True indel: indel (<= 5bp) 65991716 66808034 65698065 66514293 NC_060941.1 CM021584.2 99.85 True indel: indel (> 5bp) 66808447 66840885 66514690 66547065 NC_060941.1 CM021584.2 99.11 True local misassembly 66841069 68947347 66547351 68654731 NC_060941.1 CM021584.2 99.69 True local misassembly 68949506 69372655 68656594 69079708 NC_060941.1 CM021584.2 99.7 True local misassembly 69372772 69835425 69079921 69542622 NC_060941.1 CM021584.2 99.75 True local misassembly 69835869 71154412 69543217 70860496 NC_060941.1 CM021584.2 99.61 True local misassembly 71154607 71731084 70860844 71436975 NC_060941.1 CM021584.2 99.69 True indel: indel (> 5bp) 71731402 73613537 71437265 73319023 NC_060941.1 CM021584.2 99.79 True local misassembly 73611480 74036867 73319024 73736482 NC_060941.1 CM021584.2 97.77 True local misassembly 74037105 77817270 73736880 77524142 NC_060941.1 CM021584.2 99.6 True indel: indel (> 5bp) 77817489 78249857 77524440 77955687 NC_060941.1 CM021584.2 99.27 True local misassembly 78250151 78378460 77956138 78084492 NC_060941.1 CM021584.2 99.6 True local misassembly 78379002 79331955 78085142 79039138 NC_060941.1 CM021584.2 99.53 True local misassembly 79332508 79369355 79039513 79076247 NC_060941.1 CM021584.2 98.62 True indel: indel (> 5bp) 79369393 80033628 79076248 79741293 NC_060941.1 CM021584.2 99.61 True indel: indel (> 5bp) 80033714 81802053 79741294 81502183 NC_060941.1 CM021584.2 99.09 True indel: indel (> 5bp) 81802165 83018701 81502324 82715479 NC_060941.1 CM021584.2 99.23 True local misassembly 83019008 83459214 82715480 83160886 NC_060941.1 CM021584.2 98.2 True local misassembly 83459847 83845816 83161675 83549565 NC_060941.1 CM021584.2 98.45 True local misassembly 83846238 84110735 83549749 83811989 NC_060941.1 CM021584.2 98.15 True local misassembly 84110713 84121342 83812106 83822593 NC_060941.1 CM021584.2 98.59 True local misassembly 84124439 84157186 83825045 83857341 NC_060941.1 CM021584.2 98.13 True indel: indel (> 5bp) 84157293 84276475 83857396 83977080 NC_060941.1 CM021584.2 99.12 True CONTIG CM021584.2 83977505 misassembled 1 109546 7 109545 NC_060942.1 CM021585.2 99.8 True indel: indel (> 5bp) 109944 177156 109949 177162 NC_060942.1 CM021585.2 99.97 True local misassembly 182352 1910167 182469 1909262 NC_060942.1 CM021585.2 99.72 True indel: indel (<= 5bp) 1910445 2118039 1909536 2117036 NC_060942.1 CM021585.2 99.74 True local misassembly 2118247 3760234 2117093 3759160 NC_060942.1 CM021585.2 99.78 True indel: indel (> 5bp) 3760399 4671387 3759403 4671152 NC_060942.1 CM021585.2 99.7 True local misassembly 4672624 7304933 4675166 7305651 NC_060942.1 CM021585.2 99.69 True local misassembly 7307506 10757022 7305652 10756782 NC_060942.1 CM021585.2 99.67 True indel: indel (> 5bp) 10757084 15576918 10756856 15576884 NC_060942.1 CM021585.2 99.76 True relocation, inconsistency = 10592 15587511 15635519 15576885 15624894 NC_060942.1 CM021585.2 99.88 True local misassembly 15639603 15797258 15624895 15782548 NC_060942.1 CM021585.2 98.66 True relocation, inconsistency = 60551 15857810 15942034 15782549 15867276 NC_060942.1 CM021585.2 98.15 True relocation, inconsistency = -45953 15896082 15939303 15867277 15910471 NC_060942.1 CM021585.2 99.03 True local misassembly 15941982 15943681 15911449 15913146 NC_060942.1 CM021585.2 95.69 True local misassembly 15941982 15945967 15913147 15917132 NC_060942.1 CM021585.2 99.95 True indel: indel (<= 5bp) 15946377 15973814 15917541 15944978 NC_060942.1 CM021585.2 99.96 True local misassembly 15973738 15978737 15945577 15950576 NC_060942.1 CM021585.2 97.27 True local misassembly 15973662 15996208 15950577 15972778 NC_060942.1 CM021585.2 96.59 True relocation, inconsistency = -22335 15973874 15977199 15972779 15976102 NC_060942.1 CM021585.2 96.81 True local misassembly 15973816 15997608 15976103 16000239 NC_060942.1 CM021585.2 95.87 True local misassembly 16001002 16070410 16000240 16069648 NC_060942.1 CM021585.2 99.72 True relocation, inconsistency = 208730 16279141 16287025 16069649 16077532 NC_060942.1 CM021585.2 98.66 True relocation, inconsistency = -79258 16207768 16210414 16077533 16080180 NC_060942.1 CM021585.2 99.83 True local misassembly 16212616 16215899 16080351 16083629 NC_060942.1 CM021585.2 99.15 True relocation, inconsistency = -9488 16206803 16208640 16084021 16085857 NC_060942.1 CM021585.2 99.24 True relocation, inconsistency = -97602 16111436 16124390 16086255 16099209 NC_060942.1 CM021585.2 99.45 True relocation, inconsistency = -15595 16109891 16158639 16100305 16148710 NC_060942.1 CM021585.2 98.73 True relocation, inconsistency = 15256 16173896 16174559 16148711 16149374 NC_060942.1 CM021585.2 98.94 True local misassembly 16175133 16178627 16149607 16153101 NC_060942.1 CM021585.2 98.94 True local misassembly 16178860 16189260 16153675 16164075 NC_060942.1 CM021585.2 99.55 True indel: indel (<= 5bp) 16189261 16191493 16164077 16166309 NC_060942.1 CM021585.2 98.12 True local misassembly 16191832 16192331 16166310 16166809 NC_060942.1 CM021585.2 99.0 True indel: indel (<= 5bp) 16192487 16194336 16166967 16168816 NC_060942.1 CM021585.2 97.41 True indel: indel (<= 5bp) 16194337 16196028 16168818 16170509 NC_060942.1 CM021585.2 97.87 True relocation, inconsistency = 7786 16204484 16212573 16171179 16179268 NC_060942.1 CM021585.2 99.67 True relocation, inconsistency = 13893 16226467 16240625 16179269 16193428 NC_060942.1 CM021585.2 99.34 True relocation, inconsistency = -12192 16228434 16229852 16193429 16194847 NC_060942.1 CM021585.2 99.64 True local misassembly 16228160 16239333 16194848 16206022 NC_060942.1 CM021585.2 99.49 True relocation, inconsistency = 23367 16262701 16297455 16206023 16240780 NC_060942.1 CM021585.2 99.42 True local misassembly 16298945 16353148 16242269 16296474 NC_060942.1 CM021585.2 99.78 True local misassembly 16353668 16374091 16296998 16317421 NC_060942.1 CM021585.2 99.76 True relocation, inconsistency = 419539 16794955 16796989 16318746 16320780 NC_060942.1 CM021585.2 99.69 True relocation, inconsistency = -419535 16377455 16414531 16320781 16357853 NC_060942.1 CM021585.2 99.72 True fake: not a misassembly (possible transposable element) 16404368 16406175 16357854 16359657 NC_060942.1 CM021585.2 99.48 True fake: not a misassembly (possible transposable element) 16418028 16419754 16359658 16361384 NC_060942.1 CM021585.2 99.2 True local misassembly 16418057 16433873 16361385 16377201 NC_060942.1 CM021585.2 99.81 True indel: stretch of mismatches 16433874 16543734 16377202 16487061 NC_060942.1 CM021585.2 99.81 True relocation, inconsistency = -15273 16528462 16529566 16487062 16488166 NC_060942.1 CM021585.2 99.63 True relocation, inconsistency = 601585 17131152 17139363 16488167 16496378 NC_060942.1 CM021585.2 99.67 True relocation, inconsistency = -642291 16497073 16500141 16496379 16499447 NC_060942.1 CM021585.2 99.16 True relocation, inconsistency = 55979 16557327 16594090 16500654 16537419 NC_060942.1 CM021585.2 99.84 True indel: stretch of mismatches 16594091 16613092 16537420 16556423 NC_060942.1 CM021585.2 99.8 True fake: not a misassembly (possible transposable element) 16999022 17001005 16556424 16558408 NC_060942.1 CM021585.2 99.46 True fake: not a misassembly (possible transposable element) 16615081 16632877 16558409 16576206 NC_060942.1 CM021585.2 99.57 True indel: stretch of mismatches 16632878 16653301 16576207 16596634 NC_060942.1 CM021585.2 99.48 True local misassembly 16657095 16661737 16596700 16601342 NC_060942.1 CM021585.2 99.15 True local misassembly 16658010 16691902 16601343 16635235 NC_060942.1 CM021585.2 99.76 True indel: stretch of mismatches 16691903 16718033 16635236 16661365 NC_060942.1 CM021585.2 99.91 True relocation, inconsistency = 11523 16729557 16735523 16661366 16667332 NC_060942.1 CM021585.2 99.72 True local misassembly 16733489 16753919 16667333 16687764 NC_060942.1 CM021585.2 99.91 True local misassembly 16754599 16813246 16687765 16746413 NC_060942.1 CM021585.2 99.84 True local misassembly 16815282 16849246 16746414 16780378 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = -91232 16758015 16769457 16780379 16791821 NC_060942.1 CM021585.2 99.79 True relocation, inconsistency = 2813958 19589412 19591651 16797818 16800057 NC_060942.1 CM021585.2 98.93 True relocation, inconsistency = -2712553 16879099 16887478 16800058 16808436 NC_060942.1 CM021585.2 99.76 True indel: indel (<= 5bp) 16887880 16892549 16808840 16813509 NC_060942.1 CM021585.2 99.76 True local misassembly 16894585 16958664 16813510 16877592 NC_060942.1 CM021585.2 99.85 True indel: stretch of mismatches 16958665 16977913 16877593 16896841 NC_060942.1 CM021585.2 99.9 True indel: stretch of mismatches 16978024 17004204 16896952 16923132 NC_060942.1 CM021585.2 99.88 True indel: stretch of mismatches 17004205 17030456 16923133 16949386 NC_060942.1 CM021585.2 99.74 True indel: stretch of mismatches 17030457 17071988 16949387 16990924 NC_060942.1 CM021585.2 99.77 True indel: stretch of mismatches 17071989 17078347 16990925 16997285 NC_060942.1 CM021585.2 99.68 True local misassembly 17078952 17100052 16997900 17019001 NC_060942.1 CM021585.2 99.9 True relocation, inconsistency = -11524 17088529 17090462 17019002 17020935 NC_060942.1 CM021585.2 99.5 True relocation, inconsistency = 11523 17101986 17169968 17020936 17088918 NC_060942.1 CM021585.2 99.94 True fake: not a misassembly (possible transposable element) 17183894 17189968 17094706 17100781 NC_060942.1 CM021585.2 99.61 True fake: not a misassembly (possible transposable element) 17182917 17200271 17101868 17119222 NC_060942.1 CM021585.2 99.84 True relocation, inconsistency = 254382 17454654 17456068 17119223 17120637 NC_060942.1 CM021585.2 99.53 True indel: indel (<= 5bp) 17456070 17457058 17120638 17121626 NC_060942.1 CM021585.2 98.89 True relocation, inconsistency = -254383 17203080 17225273 17122031 17144224 NC_060942.1 CM021585.2 99.85 True local misassembly 17231171 17245179 17150118 17164126 NC_060942.1 CM021585.2 99.92 True local misassembly 17243145 17244140 17164127 17165122 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = -229081 17022140 17023298 17172203 17173361 NC_060942.1 CM021585.2 99.57 True relocation, inconsistency = 231114 17254413 17274580 17173362 17193530 NC_060942.1 CM021585.2 99.65 True local misassembly 17276172 17320480 17195121 17239428 NC_060942.1 CM021585.2 99.88 True indel: indel (<= 5bp) 17320975 17335738 17239918 17254681 NC_060942.1 CM021585.2 99.76 True local misassembly 17341346 17381369 17260289 17300314 NC_060942.1 CM021585.2 99.84 True local misassembly 17387832 17445060 17306776 17364004 NC_060942.1 CM021585.2 99.88 True local misassembly 17447656 17476689 17366600 17395634 NC_060942.1 CM021585.2 99.81 True indel: stretch of mismatches 17476754 17484423 17395699 17403368 NC_060942.1 CM021585.2 99.6 True local misassembly 17486314 17492639 17405259 17411584 NC_060942.1 CM021585.2 99.7 True indel: indel (> 5bp) 17493038 17506065 17411977 17425005 NC_060942.1 CM021585.2 99.71 True local misassembly 17504031 17507875 17425006 17428850 NC_060942.1 CM021585.2 99.56 True local misassembly 17509911 17516160 17428851 17435100 NC_060942.1 CM021585.2 99.94 True local misassembly 17525452 17533655 17444392 17452595 NC_060942.1 CM021585.2 99.96 True local misassembly 17534611 17555701 17453551 17474641 NC_060942.1 CM021585.2 99.96 True local misassembly 17569267 17574705 17488207 17493645 NC_060942.1 CM021585.2 99.98 True local misassembly 17575372 17584441 17494312 17503381 NC_060942.1 CM021585.2 99.97 True fake: not a misassembly (possible transposable element) 17250866 17252744 17503549 17505427 NC_060942.1 CM021585.2 99.68 True fake: not a misassembly (possible transposable element) 17586488 17598286 17505428 17517226 NC_060942.1 CM021585.2 99.8 True fake: not a misassembly (possible transposable element) 16495607 16498303 17520151 17522847 NC_060942.1 CM021585.2 99.14 True fake: not a misassembly (possible transposable element) 17603910 17614486 17522848 17533424 NC_060942.1 CM021585.2 99.65 True indel: stretch of mismatches 17614487 17629090 17533425 17548030 NC_060942.1 CM021585.2 99.79 True local misassembly 17631435 17683836 17550375 17602780 NC_060942.1 CM021585.2 99.84 True indel: stretch of mismatches 17683837 17697986 17602781 17616930 NC_060942.1 CM021585.2 99.8 True indel: stretch of mismatches 17697987 17699184 17616931 17618128 NC_060942.1 CM021585.2 99.74 True indel: stretch of mismatches 17699185 17714949 17618129 17633894 NC_060942.1 CM021585.2 99.77 True relocation, inconsistency = -878329 16836621 16841357 17633895 17638630 NC_060942.1 CM021585.2 99.69 True relocation, inconsistency = 339223 17182917 17191968 17640967 17650018 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 539105 17731074 17761250 17650019 17680195 NC_060942.1 CM021585.2 99.85 True indel: stretch of mismatches 17761251 17767055 17680196 17686000 NC_060942.1 CM021585.2 99.88 True indel: stretch of mismatches 17767056 17768415 17686001 17687360 NC_060942.1 CM021585.2 99.91 True indel: stretch of mismatches 17768416 17799028 17687361 17717973 NC_060942.1 CM021585.2 99.89 True fake: not a misassembly (possible transposable element) 17506177 17510340 17717985 17722148 NC_060942.1 CM021585.2 99.55 True fake: not a misassembly (possible transposable element) 17803200 17809666 17722149 17728615 NC_060942.1 CM021585.2 99.9 True indel: stretch of mismatches 17809667 17819537 17728616 17738486 NC_060942.1 CM021585.2 99.98 True relocation, inconsistency = 68515 17888053 17893282 17738487 17743716 NC_060942.1 CM021585.2 99.77 True relocation, inconsistency = -19675 17873732 17877801 17743841 17747910 NC_060942.1 CM021585.2 99.86 True indel: stretch of mismatches 17877802 17888914 17747911 17759023 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = -26455 17871697 17875426 17768261 17771990 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 50876 17926303 18071207 17771991 17916894 NC_060942.1 CM021585.2 99.95 True indel: stretch of mismatches 18071208 18087495 17916895 17933182 NC_060942.1 CM021585.2 99.98 True local misassembly 18106530 18116141 17952218 17961829 NC_060942.1 CM021585.2 100.0 True local misassembly 18121148 18203536 17966836 18049224 NC_060942.1 CM021585.2 100.0 True indel: stretch of mismatches 18203537 18213715 18049225 18059403 NC_060942.1 CM021585.2 100.0 True indel: stretch of mismatches 18213716 18214794 18059404 18060482 NC_060942.1 CM021585.2 99.94 True relocation, inconsistency = 175047 18389842 18396882 18060483 18067524 NC_060942.1 CM021585.2 99.91 True relocation, inconsistency = -175046 18223029 18229976 18068717 18075664 NC_060942.1 CM021585.2 100.0 True relocation, inconsistency = 154696 18404180 18413266 18095172 18104258 NC_060942.1 CM021585.2 99.97 True fake: not a misassembly (possible transposable element) 18258571 18264148 18104259 18109836 NC_060942.1 CM021585.2 100.0 True fake: not a misassembly (possible transposable element) 18414355 18421406 18111452 18118503 NC_060942.1 CM021585.2 99.97 True relocation, inconsistency = -111961 18309499 18319157 18118557 18128214 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = 34614 18354882 18362301 18129325 18136745 NC_060942.1 CM021585.2 99.77 True relocation, inconsistency = -254457 18107845 18110973 18136746 18139874 NC_060942.1 CM021585.2 99.93 True relocation, inconsistency = 213738 18324712 18333799 18139875 18148961 NC_060942.1 CM021585.2 99.77 True relocation, inconsistency = -270734 18069893 18077315 18155789 18163208 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = 213730 18291046 18293220 18163209 18165383 NC_060942.1 CM021585.2 99.98 True relocation, inconsistency = 24425 18317646 18364337 18165384 18212073 NC_060942.1 CM021585.2 99.86 True relocation, inconsistency = 14249 18389841 18396882 18223328 18230369 NC_060942.1 CM021585.2 99.96 True relocation, inconsistency = 213658 18613768 18620819 18233597 18240648 NC_060942.1 CM021585.2 99.93 True relocation, inconsistency = -217728 18404180 18427511 18241737 18265068 NC_060942.1 CM021585.2 100.0 True relocation, inconsistency = 207553 18636153 18643204 18266157 18273208 NC_060942.1 CM021585.2 99.91 True relocation, inconsistency = -207553 18447648 18448497 18285205 18286054 NC_060942.1 CM021585.2 99.9 True relocation, inconsistency = -390821 18057677 18065906 18286055 18294281 NC_060942.1 CM021585.2 99.81 True relocation, inconsistency = 390817 18456724 18466724 18294282 18304282 NC_060942.1 CM021585.2 99.95 True relocation, inconsistency = 17973 18508306 18515916 18327891 18335501 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = -17973 18506177 18514870 18343735 18352428 NC_060942.1 CM021585.2 99.95 True local misassembly 18520714 18526766 18358272 18364324 NC_060942.1 CM021585.2 99.95 True local misassembly 18548912 18557271 18386469 18394828 NC_060942.1 CM021585.2 99.99 True indel: stretch of mismatches 18557272 18559754 18394829 18397311 NC_060942.1 CM021585.2 99.85 True indel: stretch of mismatches 18559755 18566539 18397312 18404098 NC_060942.1 CM021585.2 99.82 True indel: stretch of mismatches 18566540 18577998 18404099 18415558 NC_060942.1 CM021585.2 99.98 True relocation, inconsistency = -506789 18078037 18087108 18422386 18431453 NC_060942.1 CM021585.2 99.92 True relocation, inconsistency = 506785 18595000 18602400 18432560 18439960 NC_060942.1 CM021585.2 100.0 True relocation, inconsistency = -199413 18412320 18423441 18449293 18460414 NC_060942.1 CM021585.2 99.98 True relocation, inconsistency = 199413 18636153 18644213 18473713 18481773 NC_060942.1 CM021585.2 100.0 True relocation, inconsistency = -596344 18047870 18063072 18481774 18496973 NC_060942.1 CM021585.2 99.86 True relocation, inconsistency = 663494 18726567 18732644 18496974 18503051 NC_060942.1 CM021585.2 99.92 True relocation, inconsistency = -288957 18452567 18457686 18511931 18517050 NC_060942.1 CM021585.2 99.86 True relocation, inconsistency = 221799 18679486 18687505 18517051 18525070 NC_060942.1 CM021585.2 99.98 True indel: stretch of mismatches 18687506 18692593 18525071 18530158 NC_060942.1 CM021585.2 100.0 True relocation, inconsistency = 725048 19417677 19423950 18530194 18536459 NC_060942.1 CM021585.2 99.44 True relocation, inconsistency = -15937 19408014 19414928 18536460 18543374 NC_060942.1 CM021585.2 99.58 True relocation, inconsistency = -709109 18709050 18722411 18546605 18559966 NC_060942.1 CM021585.2 99.9 True local misassembly 18723295 18725818 18560850 18563373 NC_060942.1 CM021585.2 99.6 True local misassembly 18766139 18772855 18603697 18610413 NC_060942.1 CM021585.2 99.79 True local misassembly 18783937 18791646 18621495 18629204 NC_060942.1 CM021585.2 99.92 True relocation, inconsistency = 581243 19375008 19383754 18631323 18640069 NC_060942.1 CM021585.2 99.89 True relocation, inconsistency = 12895 19402499 19414526 18645919 18657946 NC_060942.1 CM021585.2 99.78 True relocation, inconsistency = -594137 18824970 18830441 18662527 18668000 NC_060942.1 CM021585.2 99.67 True relocation, inconsistency = 156643 18990356 18996452 18671272 18677368 NC_060942.1 CM021585.2 99.85 True relocation, inconsistency = 472061 19471232 19475974 18680087 18684831 NC_060942.1 CM021585.2 99.5 True relocation, inconsistency = -47793 19428182 19430383 18684832 18687035 NC_060942.1 CM021585.2 99.59 True relocation, inconsistency = 37634 19468018 19476865 18687036 18695883 NC_060942.1 CM021585.2 99.69 True relocation, inconsistency = -590059 18891074 18894954 18700151 18704026 NC_060942.1 CM021585.2 99.56 True relocation, inconsistency = -28476 18867105 18873698 18704653 18711246 NC_060942.1 CM021585.2 99.97 True relocation, inconsistency = 225172 19120316 19136179 18732692 18748555 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 277424 19413604 19414928 18748556 18749880 NC_060942.1 CM021585.2 99.59 True relocation, inconsistency = 52881 19468018 19475960 18750089 18758031 NC_060942.1 CM021585.2 99.55 True relocation, inconsistency = -444249 19032280 19038923 18758600 18765243 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = -111230 18927694 18938780 18765244 18776330 NC_060942.1 CM021585.2 99.98 True relocation, inconsistency = 289950 19228731 19231691 18776331 18779291 NC_060942.1 CM021585.2 99.87 True relocation, inconsistency = -365910 18895144 18902187 18808654 18815697 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = 310300 19225766 19230906 18828976 18834116 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = -234340 18996567 19004706 18834117 18842256 NC_060942.1 CM021585.2 99.98 True indel: stretch of mismatches 19004707 19018837 18842257 18856387 NC_060942.1 CM021585.2 99.96 True relocation, inconsistency = 150572 19176611 19183695 18863589 18870673 NC_060942.1 CM021585.2 99.9 True relocation, inconsistency = -2880654 16305225 16305990 18872857 18873622 NC_060942.1 CM021585.2 98.04 True relocation, inconsistency = 2923047 19229859 19236325 18874444 18880910 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = -192965 19043361 19058177 18880911 18895727 NC_060942.1 CM021585.2 99.97 True relocation, inconsistency = 233647 19293341 19295743 18897244 18899646 NC_060942.1 CM021585.2 99.75 True local misassembly 19293341 19295743 18901314 18903716 NC_060942.1 CM021585.2 99.79 True relocation, inconsistency = -9154 19288257 19290659 18905384 18907786 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = -259088 19032819 19039862 18909034 18916077 NC_060942.1 CM021585.2 99.82 True relocation, inconsistency = 449663 19498762 19504668 18925314 18931221 NC_060942.1 CM021585.2 99.76 True relocation, inconsistency = -411001 19093973 19102930 18931527 18940484 NC_060942.1 CM021585.2 99.96 True relocation, inconsistency = 121748 19225766 19234862 18941572 18950668 NC_060942.1 CM021585.2 99.82 True relocation, inconsistency = -113608 19121255 19127359 18950669 18956773 NC_060942.1 CM021585.2 99.84 True relocation, inconsistency = 95293 19225766 19238932 18959887 18973053 NC_060942.1 CM021585.2 99.76 True relocation, inconsistency = -690446 18557985 18566084 18982552 18990653 NC_060942.1 CM021585.2 99.64 True relocation, inconsistency = 273693 18839778 18842399 18990654 18993275 NC_060942.1 CM021585.2 99.95 True relocation, inconsistency = 189880 19032280 19038923 18993276 18999919 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = 121407 19160331 19170089 18999920 19009678 NC_060942.1 CM021585.2 99.83 True relocation, inconsistency = 28148 19223749 19234862 19035190 19046303 NC_060942.1 CM021585.2 99.87 True relocation, inconsistency = -13903 19226125 19232827 19051469 19058171 NC_060942.1 CM021585.2 99.84 True relocation, inconsistency = -12210 19223749 19238932 19061303 19076486 NC_060942.1 CM021585.2 99.96 True fake: not a misassembly (possible transposable element) 19226125 19232827 19093520 19100222 NC_060942.1 CM021585.2 99.78 True fake: not a misassembly (possible transposable element) 19261730 19267966 19104029 19110266 NC_060942.1 CM021585.2 99.94 True fake: not a misassembly (possible transposable element) 19290630 19293032 19113264 19115666 NC_060942.1 CM021585.2 99.83 True fake: not a misassembly (possible transposable element) 19279359 19302337 19116914 19139892 NC_060942.1 CM021585.2 99.91 True local misassembly 19303056 19310359 19140611 19147914 NC_060942.1 CM021585.2 99.85 True local misassembly 19311470 19321077 19149029 19158636 NC_060942.1 CM021585.2 99.86 True relocation, inconsistency = -198724 19127474 19136179 19163757 19172462 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 198724 19334904 19337354 19172463 19174913 NC_060942.1 CM021585.2 99.93 True relocation, inconsistency = 14245 19351600 19360651 19174914 19183965 NC_060942.1 CM021585.2 99.88 True relocation, inconsistency = -14245 19351600 19364721 19189159 19202280 NC_060942.1 CM021585.2 99.95 True local misassembly 19387903 19398684 19225462 19236243 NC_060942.1 CM021585.2 99.95 True local misassembly 19402499 19417008 19240058 19254567 NC_060942.1 CM021585.2 99.86 True indel: stretch of mismatches 19417246 19437649 19254805 19275210 NC_060942.1 CM021585.2 99.93 True indel: stretch of mismatches 19437650 19444428 19275211 19281989 NC_060942.1 CM021585.2 99.97 True relocation, inconsistency = 16280 19460709 19464289 19281990 19285570 NC_060942.1 CM021585.2 99.74 True relocation, inconsistency = 46438 19510728 19515941 19285571 19290780 NC_060942.1 CM021585.2 99.87 True relocation, inconsistency = 8815 19524801 19529275 19290825 19295297 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 30525 19559801 19570095 19295298 19305592 NC_060942.1 CM021585.2 99.61 True relocation, inconsistency = -16280 19553816 19572372 19305593 19324147 NC_060942.1 CM021585.2 99.68 True relocation, inconsistency = -30525 19541848 19562765 19324148 19345061 NC_060942.1 CM021585.2 99.63 True relocation, inconsistency = 10175 19572941 19577608 19345062 19349729 NC_060942.1 CM021585.2 99.89 True relocation, inconsistency = -23745 19553864 19569833 19349730 19365696 NC_060942.1 CM021585.2 99.49 True relocation, inconsistency = 9500 19579334 19607144 19365697 19393510 NC_060942.1 CM021585.2 99.5 True local misassembly 19612917 19613426 19393511 19394020 NC_060942.1 CM021585.2 99.59 True local misassembly 19607988 19619595 19394021 19405625 NC_060942.1 CM021585.2 99.33 True relocation, inconsistency = -7816 19611780 19613970 19405626 19407816 NC_060942.1 CM021585.2 98.28 True local misassembly 19616454 19617939 19408265 19409750 NC_060942.1 CM021585.2 99.27 True relocation, inconsistency = 7818 19625758 19642608 19409751 19426601 NC_060942.1 CM021585.2 99.57 True relocation, inconsistency = -83528 19559081 19573060 19426602 19440580 NC_060942.1 CM021585.2 98.95 True relocation, inconsistency = 14927 19587988 19590706 19440581 19443641 NC_060942.1 CM021585.2 96.1 True relocation, inconsistency = 55027 19645734 19652350 19443642 19450258 NC_060942.1 CM021585.2 99.05 True local misassembly 19649633 19676650 19450259 19477277 NC_060942.1 CM021585.2 99.36 True relocation, inconsistency = 130090 19806741 19810553 19477278 19481091 NC_060942.1 CM021585.2 95.69 True relocation, inconsistency = -228099 19582455 19591119 19481092 19489757 NC_060942.1 CM021585.2 98.95 True relocation, inconsistency = 20710 19611830 19613191 19489758 19491119 NC_060942.1 CM021585.2 98.11 True relocation, inconsistency = 138738 19751930 19768325 19491120 19507856 NC_060942.1 CM021585.2 97.53 True relocation, inconsistency = -99158 19669168 19675439 19507857 19514129 NC_060942.1 CM021585.2 98.72 True local misassembly 19672037 19674470 19514130 19516563 NC_060942.1 CM021585.2 99.14 True relocation, inconsistency = 128729 19803416 19817883 19516780 19531589 NC_060942.1 CM021585.2 96.95 True relocation, inconsistency = -8138 19809746 19810572 19531590 19532416 NC_060942.1 CM021585.2 99.0 True local misassembly 19806505 19840345 19532417 19565916 NC_060942.1 CM021585.2 98.49 True relocation, inconsistency = -12230 19828116 19831647 19565917 19569106 NC_060942.1 CM021585.2 96.47 True relocation, inconsistency = -58431 19773217 19791786 19569107 19587676 NC_060942.1 CM021585.2 99.55 True relocation, inconsistency = 10886 19802673 19807067 19587677 19592071 NC_060942.1 CM021585.2 99.27 True local misassembly 19811136 19828586 19592072 19609522 NC_060942.1 CM021585.2 99.57 True fake: not a misassembly (possible transposable element) 20235272 20238919 19610847 19614494 NC_060942.1 CM021585.2 99.4 True fake: not a misassembly (possible transposable element) 19833563 19940141 19614495 19721074 NC_060942.1 CM021585.2 99.76 True indel: stretch of mismatches 19940142 19955789 19721075 19736719 NC_060942.1 CM021585.2 98.86 True indel: stretch of mismatches 19955790 19981696 19736720 19762628 NC_060942.1 CM021585.2 99.45 True relocation, inconsistency = 250073 20231770 20232407 19762629 19763266 NC_060942.1 CM021585.2 98.35 True relocation, inconsistency = -268424 19964138 19978386 19763421 19777669 NC_060942.1 CM021585.2 99.25 True relocation, inconsistency = 48921 20027308 20054944 19777670 19805301 NC_060942.1 CM021585.2 99.01 True relocation, inconsistency = -21760 20033185 20048434 19805302 19820549 NC_060942.1 CM021585.2 98.99 True local misassembly 20043671 20052500 19820550 19829379 NC_060942.1 CM021585.2 99.59 True relocation, inconsistency = -8844 20043657 20057002 19829380 19842725 NC_060942.1 CM021585.2 99.45 True relocation, inconsistency = -23120 20034051 20056686 19842894 19865527 NC_060942.1 CM021585.2 99.17 True relocation, inconsistency = -16320 20040367 20053267 19865528 19878426 NC_060942.1 CM021585.2 99.22 True local misassembly 20047828 20049780 19878427 19880379 NC_060942.1 CM021585.2 99.27 True relocation, inconsistency = 8836 20058617 20067460 19880380 19889223 NC_060942.1 CM021585.2 99.6 True relocation, inconsistency = -23804 20043657 20049085 19889224 19894652 NC_060942.1 CM021585.2 99.45 True relocation, inconsistency = 12240 20061326 20102227 19894653 19935552 NC_060942.1 CM021585.2 99.6 True local misassembly 20104948 20118301 19935553 19948906 NC_060942.1 CM021585.2 99.23 True local misassembly 20124426 20146897 19948907 19971720 NC_060942.1 CM021585.2 97.36 True relocation, inconsistency = -46581 20100317 20107933 19971721 19979337 NC_060942.1 CM021585.2 95.16 True relocation, inconsistency = 43861 20151795 20174697 19979338 20001897 NC_060942.1 CM021585.2 97.84 True local misassembly 20178425 20181606 20001898 20005079 NC_060942.1 CM021585.2 99.75 True local misassembly 20185677 20192491 20005080 20011894 NC_060942.1 CM021585.2 99.35 True relocation, inconsistency = 13231 20205723 20209986 20011895 20016158 NC_060942.1 CM021585.2 99.89 True local misassembly 20209824 20214891 20016676 20021744 NC_060942.1 CM021585.2 99.52 True local misassembly 20214216 20220607 20021745 20028137 NC_060942.1 CM021585.2 99.23 True fake: not a misassembly (possible transposable element) 19861605 19868199 20028279 20034874 NC_060942.1 CM021585.2 98.3 True fake: not a misassembly (possible transposable element) 20226144 20232939 20035035 20041830 NC_060942.1 CM021585.2 99.69 True local misassembly 20233282 20236796 20041831 20045345 NC_060942.1 CM021585.2 98.59 True local misassembly 20234761 20251858 20045346 20062103 NC_060942.1 CM021585.2 97.11 True relocation, inconsistency = 45890 20297787 20300506 20062142 20064861 NC_060942.1 CM021585.2 99.05 True relocation, inconsistency = -17676 20282831 20297059 20064862 20079090 NC_060942.1 CM021585.2 99.51 True relocation, inconsistency = -18351 20278709 20279249 20079091 20079631 NC_060942.1 CM021585.2 99.5 True local misassembly 20279250 20280503 20079974 20081227 NC_060942.1 CM021585.2 99.84 True relocation, inconsistency = 417642 20698146 20704734 20081228 20087819 NC_060942.1 CM021585.2 98.67 True relocation, inconsistency = -426816 20277919 20279272 20087820 20089173 NC_060942.1 CM021585.2 99.66 True local misassembly 20279273 20282092 20089516 20092335 NC_060942.1 CM021585.2 99.78 True relocation, inconsistency = 12911 20295004 20302471 20092336 20099803 NC_060942.1 CM021585.2 98.29 True local misassembly 20298336 20309575 20100424 20112006 NC_060942.1 CM021585.2 95.48 True local misassembly 20309045 20319248 20112152 20122012 NC_060942.1 CM021585.2 96.13 True local misassembly 20317889 20320558 20122013 20124676 NC_060942.1 CM021585.2 99.25 True local misassembly 20315804 20332027 20124677 20141243 NC_060942.1 CM021585.2 97.46 True relocation, inconsistency = -15620 20316408 20320408 20141244 20145244 NC_060942.1 CM021585.2 99.31 True local misassembly 20316671 20317927 20145245 20146501 NC_060942.1 CM021585.2 98.72 True local misassembly 20318270 20321614 20146502 20149846 NC_060942.1 CM021585.2 99.76 True local misassembly 20321957 20332692 20149847 20160582 NC_060942.1 CM021585.2 99.8 True relocation, inconsistency = 13573 20346266 20347270 20160583 20161587 NC_060942.1 CM021585.2 99.51 True relocation, inconsistency = -235084 20112187 20123271 20161588 20172671 NC_060942.1 CM021585.2 98.81 True relocation, inconsistency = 245276 20368548 20374941 20172672 20179064 NC_060942.1 CM021585.2 99.8 True local misassembly 20381742 20422383 20179065 20219364 NC_060942.1 CM021585.2 97.07 True relocation, inconsistency = -190318 20232066 20246999 20219365 20233957 NC_060942.1 CM021585.2 96.78 True relocation, inconsistency = 185562 20432563 20436983 20233959 20238379 NC_060942.1 CM021585.2 98.64 True relocation, inconsistency = -122347 20314637 20315853 20238380 20239597 NC_060942.1 CM021585.2 97.99 True local misassembly 20311077 20315853 20239916 20244694 NC_060942.1 CM021585.2 97.93 True relocation, inconsistency = -505599 19810255 19812071 20244695 20246511 NC_060942.1 CM021585.2 98.32 True local misassembly 19812845 19816001 20246610 20249767 NC_060942.1 CM021585.2 98.62 True local misassembly 19814642 19816659 20249768 20251785 NC_060942.1 CM021585.2 98.54 True relocation, inconsistency = 412813 20229473 20236477 20251786 20258790 NC_060942.1 CM021585.2 98.43 True relocation, inconsistency = 315032 20552382 20555047 20259663 20262328 NC_060942.1 CM021585.2 98.42 True relocation, inconsistency = -108380 20446668 20448182 20262329 20263843 NC_060942.1 CM021585.2 98.88 True local misassembly 20448183 20450902 20264186 20266905 NC_060942.1 CM021585.2 99.13 True local misassembly 20448183 20463549 20266906 20282271 NC_060942.1 CM021585.2 99.71 True local misassembly 20457777 20459042 20282272 20283537 NC_060942.1 CM021585.2 99.14 True relocation, inconsistency = 24451 20483509 20487647 20283553 20287691 NC_060942.1 CM021585.2 99.82 True relocation, inconsistency = 12913 20500561 20513412 20287692 20300543 NC_060942.1 CM021585.2 99.31 True relocation, inconsistency = -19369 20494044 20496194 20300544 20302695 NC_060942.1 CM021585.2 98.97 True local misassembly 20489739 20504187 20302696 20317145 NC_060942.1 CM021585.2 99.25 True relocation, inconsistency = -522278 19981910 19985855 20317146 20321091 NC_060942.1 CM021585.2 98.75 True relocation, inconsistency = 545049 20530905 20543141 20321092 20333327 NC_060942.1 CM021585.2 99.22 True relocation, inconsistency = -14956 20528186 20558737 20333328 20363878 NC_060942.1 CM021585.2 99.49 True local misassembly 20557379 20567006 20363879 20373849 NC_060942.1 CM021585.2 97.2 True relocation, inconsistency = -14272 20552735 20558323 20373850 20379437 NC_060942.1 CM021585.2 99.04 True relocation, inconsistency = 69323 20627647 20661192 20379438 20412984 NC_060942.1 CM021585.2 99.08 True relocation, inconsistency = -55394 20605799 20629926 20412985 20437455 NC_060942.1 CM021585.2 98.33 True relocation, inconsistency = 73405 20703332 20709160 20437456 20443287 NC_060942.1 CM021585.2 99.1 True local misassembly 20705099 20707816 20443301 20446018 NC_060942.1 CM021585.2 99.48 True indel: indel (<= 5bp) 20707817 20713231 20446021 20451435 NC_060942.1 CM021585.2 99.93 True local misassembly 20713601 20714579 20452149 20453127 NC_060942.1 CM021585.2 98.47 True indel: indel (> 5bp) 20714959 20715789 20453516 20454346 NC_060942.1 CM021585.2 99.28 True local misassembly 20716232 20717145 20455130 20456043 NC_060942.1 CM021585.2 98.69 True indel: indel (> 5bp) 20717297 20719033 20456203 20457939 NC_060942.1 CM021585.2 98.73 True indel: indel (<= 5bp) 20719034 20720022 20457942 20458930 NC_060942.1 CM021585.2 98.89 True relocation, inconsistency = -15637 20704616 20717728 20459161 20472617 NC_060942.1 CM021585.2 96.1 True local misassembly 20715688 20717662 20472618 20474592 NC_060942.1 CM021585.2 99.95 True relocation, inconsistency = 19863 20738015 20747176 20475082 20484243 NC_060942.1 CM021585.2 99.84 True indel: stretch of mismatches 20747386 20747902 20484453 20484969 NC_060942.1 CM021585.2 99.61 True local misassembly 20748620 20754665 20485679 20491732 NC_060942.1 CM021585.2 98.29 True relocation, inconsistency = 30008 20784674 20828962 20491733 20535845 NC_060942.1 CM021585.2 98.31 True relocation, inconsistency = 53753 20882716 20886291 20535846 20539421 NC_060942.1 CM021585.2 99.03 True relocation, inconsistency = -40350 20845942 20863877 20539422 20557359 NC_060942.1 CM021585.2 99.14 True local misassembly 20866602 20870320 20558221 20561939 NC_060942.1 CM021585.2 98.76 True relocation, inconsistency = 11011 20881332 20882308 20561940 20562916 NC_060942.1 CM021585.2 98.34 True relocation, inconsistency = -29836 20853065 20866101 20563509 20576549 NC_060942.1 CM021585.2 99.53 True local misassembly 20861035 20866776 20577251 20582991 NC_060942.1 CM021585.2 99.08 True relocation, inconsistency = -43928 20823724 20837330 20583867 20597477 NC_060942.1 CM021585.2 99.16 True relocation, inconsistency = 38659 20876962 20877963 20598450 20599451 NC_060942.1 CM021585.2 99.3 True indel: stretch of mismatches 20878087 20907437 20599575 20628926 NC_060942.1 CM021585.2 98.67 True local misassembly 20901672 20913063 20628927 20640150 NC_060942.1 CM021585.2 95.02 True relocation, inconsistency = 10015 20923079 20932091 20640151 20649163 NC_060942.1 CM021585.2 99.88 True local misassembly 20932092 20933022 20652724 20653654 NC_060942.1 CM021585.2 99.89 True local misassembly 20933023 20934175 20658580 20659732 NC_060942.1 CM021585.2 100.0 True local misassembly 20934176 20935688 20664667 20666179 NC_060942.1 CM021585.2 97.03 True local misassembly 20935689 20936329 20666521 20667161 NC_060942.1 CM021585.2 96.72 True indel: indel (<= 5bp) 20936541 20937219 20667371 20668049 NC_060942.1 CM021585.2 96.17 True local misassembly 20937561 20939091 20668050 20669580 NC_060942.1 CM021585.2 97.19 True local misassembly 20939092 20940622 20669922 20671452 NC_060942.1 CM021585.2 96.93 True local misassembly 20940964 20941604 20671453 20672093 NC_060942.1 CM021585.2 96.57 True indel: indel (<= 5bp) 20941814 20944348 20672305 20674839 NC_060942.1 CM021585.2 96.42 True relocation, inconsistency = 16506 20960855 20964257 20674840 20678242 NC_060942.1 CM021585.2 96.03 True local misassembly 20964599 20966802 20678243 20680446 NC_060942.1 CM021585.2 95.96 True indel: indel (<= 5bp) 20966803 20967983 20680450 20681630 NC_060942.1 CM021585.2 95.85 True local misassembly 20973386 20974465 20687201 20688280 NC_060942.1 CM021585.2 95.74 True local misassembly 20982756 20985345 20696914 20699503 NC_060942.1 CM021585.2 95.79 True indel: indel (<= 5bp) 20985349 20989089 20699504 20703244 NC_060942.1 CM021585.2 98.05 True indel: indel (<= 5bp) 20989090 20991737 20703248 20705895 NC_060942.1 CM021585.2 98.19 True fake: not a misassembly (possible transposable element) 20975067 20975900 20705896 20706729 NC_060942.1 CM021585.2 98.97 True fake: not a misassembly (possible transposable element) 20994496 20995415 20708484 20709403 NC_060942.1 CM021585.2 97.5 True relocation, inconsistency = -16843 20978701 21087264 20709532 20818093 NC_060942.1 CM021585.2 99.76 True indel: indel (<= 5bp) 21087589 24517723 20818417 24248677 NC_060942.1 CM021585.2 99.87 True local misassembly 24518953 28049482 24248678 27777041 NC_060942.1 CM021585.2 99.77 True local misassembly 28050377 28888485 27777815 28616112 NC_060942.1 CM021585.2 99.89 True translocation 79535037 79535999 28616113 28617074 NC_060925.1 CM021585.2 96.67 True indel: indel (> 5bp) 79536214 79538969 28617265 28620022 NC_060925.1 CM021585.2 95.69 True translocation 28888061 29785450 28621018 29518416 NC_060942.1 CM021585.2 99.93 True indel: indel (> 5bp) 29785586 30746938 29518614 30479181 NC_060942.1 CM021585.2 99.75 True indel: indel (> 5bp) 30747029 31340599 30479304 31072875 NC_060942.1 CM021585.2 99.8 True local misassembly 31340766 39519964 31072920 39250949 NC_060942.1 CM021585.2 99.81 True indel: indel (> 5bp) 39520134 43804821 39251153 43535893 NC_060942.1 CM021585.2 99.89 True indel: indel (> 5bp) 43804999 45427092 43536063 45157177 NC_060942.1 CM021585.2 99.75 True local misassembly 45427773 47221547 45157720 46951480 NC_060942.1 CM021585.2 99.92 True relocation, inconsistency = -29581 47191967 48925773 46951481 48684758 NC_060942.1 CM021585.2 99.82 True indel: indel (> 5bp) 48925796 50370357 48684817 50129116 NC_060942.1 CM021585.2 99.85 True local misassembly 50373772 50651633 50129121 50406972 NC_060942.1 CM021585.2 99.74 True relocation, inconsistency = -7195 50651089 51332387 50413623 51094801 NC_060942.1 CM021585.2 99.84 True local misassembly 51332722 53289302 51095294 53057305 NC_060942.1 CM021585.2 99.51 True local misassembly 53289884 56332741 53057370 56102453 NC_060942.1 CM021585.2 99.42 True indel: indel (> 5bp) 56332800 59089946 56102506 58863667 NC_060942.1 CM021585.2 99.58 True indel: indel (> 5bp) 59090089 62156658 58863770 61929722 NC_060942.1 CM021585.2 99.75 True indel: indel (> 5bp) 62156803 62173308 61929823 61946333 NC_060942.1 CM021585.2 99.74 True local misassembly 62175510 62210213 61948065 61982703 NC_060942.1 CM021585.2 99.2 True local misassembly 62210153 64751101 61984102 64525203 NC_060942.1 CM021585.2 99.77 True indel: indel (> 5bp) 64751269 64814771 64525360 64588830 NC_060942.1 CM021585.2 99.5 True indel: indel (> 5bp) 64815112 68428281 64589122 68210080 NC_060942.1 CM021585.2 99.54 True local misassembly 68429436 71420010 68211451 71203329 NC_060942.1 CM021585.2 99.69 True indel: indel (> 5bp) 71420183 73193956 71203581 72976747 NC_060942.1 CM021585.2 99.75 True relocation, inconsistency = -12884 73188018 74446047 72983693 74237176 NC_060942.1 CM021585.2 99.34 True indel: indel (<= 5bp) 74446070 76737107 74237197 76528131 NC_060942.1 CM021585.2 99.8 True indel: indel (> 5bp) 76737299 76826713 76528260 76617551 NC_060942.1 CM021585.2 99.39 True indel: indel (<= 5bp) 76826909 77259115 76617746 77050186 NC_060942.1 CM021585.2 99.48 True local misassembly 77259196 77484016 77050443 77275028 NC_060942.1 CM021585.2 99.42 True local misassembly 77485692 78462449 77276386 78253768 NC_060942.1 CM021585.2 99.41 True local misassembly 78463815 78464585 78255393 78256163 NC_060942.1 CM021585.2 99.35 True indel: indel (> 5bp) 78464665 78466345 78256204 78257884 NC_060942.1 CM021585.2 99.05 True local misassembly 78466757 78471218 78258195 78262656 NC_060942.1 CM021585.2 99.8 True local misassembly 78473347 78886846 78265850 78681104 NC_060942.1 CM021585.2 98.14 True local misassembly 78889351 79922424 78684590 79695401 NC_060942.1 CM021585.2 97.29 True indel: indel (> 5bp) 79922610 80140926 79695621 79913161 NC_060942.1 CM021585.2 99.03 True local misassembly 80140732 80192215 79913162 79963906 NC_060942.1 CM021585.2 96.94 True indel: indel (> 5bp) 80192250 80539927 79963907 80311599 NC_060942.1 CM021585.2 99.73 True local misassembly 80541014 80542538 80312681 80314204 NC_060942.1 CM021585.2 98.89 True CONTIG CM021585.2 80314204 misassembled 1 283318 1 284252 NC_060943.1 CM021586.2 99.11 True local misassembly 282623 432487 284253 440370 NC_060943.1 CM021586.2 95.29 True local misassembly 433928 435039 440753 441864 NC_060943.1 CM021586.2 99.55 True indel: indel (<= 5bp) 435040 436579 441866 443405 NC_060943.1 CM021586.2 99.22 True indel: indel (<= 5bp) 436580 439831 443409 446660 NC_060943.1 CM021586.2 99.75 True indel: indel (<= 5bp) 439834 442851 446661 449678 NC_060943.1 CM021586.2 99.77 True indel: indel (<= 5bp) 442854 445082 449679 451907 NC_060943.1 CM021586.2 99.96 True local misassembly 445481 446500 452168 453187 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 446503 449355 453188 456040 NC_060943.1 CM021586.2 99.75 True local misassembly 449356 449856 456277 456777 NC_060943.1 CM021586.2 99.4 True indel: indel (> 5bp) 449857 451927 456797 458867 NC_060943.1 CM021586.2 99.95 True indel: indel (<= 5bp) 451932 453987 458868 460923 NC_060943.1 CM021586.2 99.95 True indel: indel (> 5bp) 454224 456148 461134 463058 NC_060943.1 CM021586.2 99.74 True indel: indel (<= 5bp) 456149 466211 463060 473122 NC_060943.1 CM021586.2 99.9 True indel: indel (> 5bp) 466244 470615 473123 477494 NC_060943.1 CM021586.2 99.66 True indel: indel (<= 5bp) 470617 472687 477495 479565 NC_060943.1 CM021586.2 99.61 True indel: indel (> 5bp) 473080 474619 479966 481505 NC_060943.1 CM021586.2 99.55 True indel: indel (<= 5bp) 474625 476551 481506 483432 NC_060943.1 CM021586.2 99.58 True indel: indel (<= 5bp) 476552 477390 483436 484274 NC_060943.1 CM021586.2 100.0 True local misassembly 478366 479314 485488 486436 NC_060943.1 CM021586.2 99.16 True indel: indel (<= 5bp) 479317 480160 486437 487280 NC_060943.1 CM021586.2 99.88 True indel: indel (<= 5bp) 480356 481046 487473 488163 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 481049 482770 488164 489885 NC_060943.1 CM021586.2 99.36 True indel: indel (<= 5bp) 482775 483359 489886 490470 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 483360 484227 490472 491339 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 484228 487885 491341 494998 NC_060943.1 CM021586.2 99.92 True local misassembly 488312 489689 495204 496581 NC_060943.1 CM021586.2 99.78 True indel: indel (> 5bp) 489690 491233 496661 498204 NC_060943.1 CM021586.2 99.68 True indel: indel (<= 5bp) 491235 492119 498205 499089 NC_060943.1 CM021586.2 99.77 True indel: indel (<= 5bp) 492120 493616 499091 500587 NC_060943.1 CM021586.2 99.8 True local misassembly 494576 497616 500942 503982 NC_060943.1 CM021586.2 99.64 True indel: indel (<= 5bp) 497617 498502 503985 504870 NC_060943.1 CM021586.2 99.77 True local misassembly 499165 514900 505484 521219 NC_060943.1 CM021586.2 99.97 True indel: indel (<= 5bp) 514902 516026 521220 522344 NC_060943.1 CM021586.2 99.91 True indel: indel (<= 5bp) 516031 516830 522345 523144 NC_060943.1 CM021586.2 99.5 True indel: indel (<= 5bp) 517002 518175 523318 524491 NC_060943.1 CM021586.2 99.74 True local misassembly 519080 519741 526394 527055 NC_060943.1 CM021586.2 98.94 True local misassembly 522957 524387 527056 528486 NC_060943.1 CM021586.2 99.93 True indel: indel (> 5bp) 524519 526825 528600 530906 NC_060943.1 CM021586.2 99.91 True indel: indel (> 5bp) 526959 527603 531051 531695 NC_060943.1 CM021586.2 99.53 True indel: indel (<= 5bp) 527605 528144 531696 532235 NC_060943.1 CM021586.2 100.0 True indel: stretch of mismatches 528444 529588 532535 533679 NC_060943.1 CM021586.2 99.65 True indel: indel (<= 5bp) 529590 530659 533680 534749 NC_060943.1 CM021586.2 99.63 True indel: indel (<= 5bp) 530853 532609 534948 536704 NC_060943.1 CM021586.2 99.66 True indel: stretch of mismatches 532627 533143 536722 537238 NC_060943.1 CM021586.2 99.23 True indel: indel (> 5bp) 533161 534054 537239 538132 NC_060943.1 CM021586.2 99.33 True indel: indel (<= 5bp) 534056 534778 538133 538855 NC_060943.1 CM021586.2 98.76 True indel: indel (> 5bp) 534952 539191 539017 543256 NC_060943.1 CM021586.2 99.36 True indel: indel (> 5bp) 539192 540176 543305 544289 NC_060943.1 CM021586.2 99.8 True indel: indel (> 5bp) 540177 541102 544300 545225 NC_060943.1 CM021586.2 99.24 True indel: indel (<= 5bp) 541569 542931 545691 547053 NC_060943.1 CM021586.2 99.41 True indel: indel (> 5bp) 542941 548109 547054 552222 NC_060943.1 CM021586.2 99.86 True indel: indel (<= 5bp) 548114 553738 552223 557847 NC_060943.1 CM021586.2 99.95 True indel: indel (> 5bp) 553745 556279 557848 560382 NC_060943.1 CM021586.2 100.0 True indel: indel (> 5bp) 556644 560032 560714 564102 NC_060943.1 CM021586.2 99.94 True indel: indel (> 5bp) 560033 566677 564155 570799 NC_060943.1 CM021586.2 99.91 True indel: indel (> 5bp) 567164 567812 571257 571905 NC_060943.1 CM021586.2 99.54 True local misassembly 568027 791151 572231 794306 NC_060943.1 CM021586.2 99.04 True local misassembly 791278 827914 794316 830476 NC_060943.1 CM021586.2 98.28 True local misassembly 829224 2351710 833193 2348993 NC_060943.1 CM021586.2 99.17 True indel: indel (> 5bp) 2351747 2393140 2349050 2390320 NC_060943.1 CM021586.2 98.24 True local misassembly 2393738 5783626 2391059 5781934 NC_060943.1 CM021586.2 99.57 True indel: indel (> 5bp) 5783700 6344298 5782002 6342525 NC_060943.1 CM021586.2 99.77 True indel: indel (> 5bp) 6344306 7029312 6342609 7026964 NC_060943.1 CM021586.2 99.55 True relocation, inconsistency = -18535 7010778 7051676 7026965 7068122 NC_060943.1 CM021586.2 98.67 True relocation, inconsistency = -18357 7033320 7052120 7068123 7086904 NC_060943.1 CM021586.2 98.82 True indel: indel (> 5bp) 7052158 8650987 7086905 8692753 NC_060943.1 CM021586.2 98.83 True local misassembly 8651526 8736191 8693478 8778747 NC_060943.1 CM021586.2 99.18 True relocation, inconsistency = 89554 8825746 11552598 8778748 11505669 NC_060943.1 CM021586.2 99.7 True indel: indel (> 5bp) 11552987 11740907 11506022 11693946 NC_060943.1 CM021586.2 99.77 True indel: indel (> 5bp) 11740951 13661188 11694055 13613573 NC_060943.1 CM021586.2 99.83 True local misassembly 13662363 14723002 13614645 14674179 NC_060943.1 CM021586.2 99.64 True local misassembly 14722959 14889881 14674226 14841827 NC_060943.1 CM021586.2 98.99 True local misassembly 14890096 15692113 14842973 15644627 NC_060943.1 CM021586.2 99.7 True indel: indel (> 5bp) 15692255 15726043 15644715 15678414 NC_060943.1 CM021586.2 99.11 True indel: indel (<= 5bp) 15726137 15832256 15678503 15784004 NC_060943.1 CM021586.2 98.71 True fake: not a misassembly (possible transposable element) 166680741 166681918 15784039 15785216 NC_060929.1 CM021586.2 98.56 True fake: not a misassembly (possible transposable element) 15835139 16105773 15785239 16056338 NC_060943.1 CM021586.2 98.67 True indel: indel (<= 5bp) 16105981 16191632 16056549 16141938 NC_060943.1 CM021586.2 99.21 True local misassembly 16191783 20282466 16143921 20236836 NC_060943.1 CM021586.2 99.72 True local misassembly 20282411 20961263 20238084 20917002 NC_060943.1 CM021586.2 99.75 True indel: indel (> 5bp) 20961342 21057313 20917101 21013003 NC_060943.1 CM021586.2 99.67 True indel: indel (> 5bp) 21057489 21712542 21013237 21668218 NC_060943.1 CM021586.2 99.82 True relocation, inconsistency = -47645 21707476 21858862 21710797 21862501 NC_060943.1 CM021586.2 98.92 True local misassembly 21861381 22370222 21862502 22371252 NC_060943.1 CM021586.2 99.76 True translocation 26916358 26924587 22379478 22371260 NC_060934.1 CM021586.2 98.65 True translocation 22370220 23902329 22379479 23916965 NC_060943.1 CM021586.2 99.46 True local misassembly 23902405 24655541 23917197 24670231 NC_060943.1 CM021586.2 99.6 True relocation, inconsistency = -8686 24646856 24653825 24670232 24677197 NC_060943.1 CM021586.2 96.7 True relocation, inconsistency = 22138 24675964 24701322 24677198 24702048 NC_060943.1 CM021586.2 97.05 True relocation, inconsistency = -42693 24658630 24659510 24702049 24702929 NC_060943.1 CM021586.2 97.22 True local misassembly 24655083 24670580 24702930 24718426 NC_060943.1 CM021586.2 99.69 True relocation, inconsistency = -15498 24655083 24676084 24718427 24739428 NC_060943.1 CM021586.2 99.73 True local misassembly 24679222 24709602 24742226 24772778 NC_060943.1 CM021586.2 96.35 True relocation, inconsistency = -42182 24667421 24675075 24772779 24780433 NC_060943.1 CM021586.2 98.95 True relocation, inconsistency = 54444 24729547 24734613 24780461 24785527 NC_060943.1 CM021586.2 97.45 True relocation, inconsistency = -28441 24706173 24715198 24785528 24794553 NC_060943.1 CM021586.2 99.71 True local misassembly 24709579 24711884 24794554 24796859 NC_060943.1 CM021586.2 99.19 True indel: indel (<= 5bp) 24711887 24719626 24796860 24804599 NC_060943.1 CM021586.2 99.44 True relocation, inconsistency = -7834 24711793 24719949 24804600 24812756 NC_060943.1 CM021586.2 99.35 True local misassembly 24717736 24749118 24812757 24843290 NC_060943.1 CM021586.2 96.0 True relocation, inconsistency = 45631 24794750 24801396 24843291 24849933 NC_060943.1 CM021586.2 98.42 True local misassembly 24794756 24874443 24849934 24929626 NC_060943.1 CM021586.2 98.49 True relocation, inconsistency = -79694 24794750 25007880 24929627 25142758 NC_060943.1 CM021586.2 98.99 True relocation, inconsistency = 92656 25100537 25217262 25142759 25259863 NC_060943.1 CM021586.2 98.39 True local misassembly 25218238 25225851 25259975 25267589 NC_060943.1 CM021586.2 98.86 True relocation, inconsistency = -7493 25218359 25313774 25267590 25363004 NC_060943.1 CM021586.2 99.85 True relocation, inconsistency = 35271 25349046 25401539 25363005 25414984 NC_060943.1 CM021586.2 98.77 True relocation, inconsistency = -18581 25382959 25420308 25414985 25452846 NC_060943.1 CM021586.2 98.28 True local misassembly 25420872 25425207 25453411 25457746 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 25425378 25512478 25457919 25545020 NC_060943.1 CM021586.2 99.81 True relocation, inconsistency = 21822 25534301 25536876 25545021 25547596 NC_060943.1 CM021586.2 99.89 True local misassembly 25530359 25547779 25547730 25565150 NC_060943.1 CM021586.2 99.89 True local misassembly 25547780 25561407 25566174 25579801 NC_060943.1 CM021586.2 99.99 True local misassembly 25561408 25565978 25580825 25585395 NC_060943.1 CM021586.2 100.0 True indel: indel (<= 5bp) 25565980 25571191 25585396 25590607 NC_060943.1 CM021586.2 99.67 True relocation, inconsistency = 46161 25617353 25658535 25590608 25631790 NC_060943.1 CM021586.2 99.93 True indel: indel (<= 5bp) 25658538 25675759 25631791 25649012 NC_060943.1 CM021586.2 99.98 True indel: indel (<= 5bp) 25675760 25684982 25649017 25658239 NC_060943.1 CM021586.2 99.98 True indel: indel (<= 5bp) 25684983 25701166 25658241 25674424 NC_060943.1 CM021586.2 99.93 True indel: indel (<= 5bp) 25701171 25702784 25674425 25676038 NC_060943.1 CM021586.2 98.95 True indel: indel (<= 5bp) 25702787 25719122 25676039 25692374 NC_060943.1 CM021586.2 99.72 True indel: indel (<= 5bp) 25719123 25721855 25692376 25695108 NC_060943.1 CM021586.2 99.52 True indel: indel (<= 5bp) 25721857 25723177 25695109 25696429 NC_060943.1 CM021586.2 98.86 True indel: indel (> 5bp) 25723178 25748363 25696436 25721621 NC_060943.1 CM021586.2 99.73 True relocation, inconsistency = 14069 25762433 25803279 25721622 25762468 NC_060943.1 CM021586.2 99.97 True indel: indel (<= 5bp) 25803281 25833152 25762469 25792340 NC_060943.1 CM021586.2 99.88 True indel: indel (<= 5bp) 25833153 25834208 25792342 25793397 NC_060943.1 CM021586.2 98.39 True indel: indel (<= 5bp) 25834595 25835224 25793785 25794414 NC_060943.1 CM021586.2 96.35 True local misassembly 25836245 25842683 25795431 25801869 NC_060943.1 CM021586.2 98.85 True indel: indel (<= 5bp) 25842684 25843187 25801873 25802376 NC_060943.1 CM021586.2 97.62 True indel: indel (<= 5bp) 25843189 25844158 25802377 25803346 NC_060943.1 CM021586.2 98.76 True local misassembly 25844159 25845175 25803686 25804702 NC_060943.1 CM021586.2 98.43 True local misassembly 25845738 25847879 25804929 25807070 NC_060943.1 CM021586.2 97.43 True local misassembly 25848681 25873620 25807874 25832815 NC_060943.1 CM021586.2 99.18 True local misassembly 25878090 25879047 25834567 25835524 NC_060943.1 CM021586.2 97.57 True local misassembly 25883126 25889205 25835525 25841604 NC_060943.1 CM021586.2 99.06 True indel: indel (<= 5bp) 25889206 25889909 25841606 25842309 NC_060943.1 CM021586.2 99.29 True local misassembly 25890509 25892254 25842573 25844318 NC_060943.1 CM021586.2 98.05 True local misassembly 25892843 25894521 25844319 25845997 NC_060943.1 CM021586.2 97.86 True indel: indel (<= 5bp) 25894522 25895526 25845999 25847003 NC_060943.1 CM021586.2 97.61 True relocation, inconsistency = -16558 25879581 25881551 25847616 25849585 NC_060943.1 CM021586.2 97.11 True local misassembly 25879511 25881687 25849586 25851761 NC_060943.1 CM021586.2 97.11 True relocation, inconsistency = 10774 25894541 25899161 25853841 25858461 NC_060943.1 CM021586.2 98.83 True local misassembly 25900650 25901987 25859953 25861290 NC_060943.1 CM021586.2 97.23 True indel: indel (<= 5bp) 25902470 25910907 25861772 25870210 NC_060943.1 CM021586.2 98.79 True indel: indel (<= 5bp) 25911191 25928595 25870495 25887910 NC_060943.1 CM021586.2 98.2 True indel: indel (<= 5bp) 25928773 25932224 25888087 25891538 NC_060943.1 CM021586.2 98.12 True local misassembly 25934330 25939693 25893643 25899007 NC_060943.1 CM021586.2 99.25 True local misassembly 25940303 25959410 25899617 25918384 NC_060943.1 CM021586.2 97.52 True indel: stretch of mismatches 25959724 25960758 25918698 25919731 NC_060943.1 CM021586.2 97.49 True local misassembly 25961876 25963828 25920850 25922802 NC_060943.1 CM021586.2 98.62 True local misassembly 25963724 25967009 25923037 25926321 NC_060943.1 CM021586.2 98.75 True indel: indel (<= 5bp) 25967458 25969449 25926771 25928762 NC_060943.1 CM021586.2 97.94 True local misassembly 25970246 25972907 25929559 25932220 NC_060943.1 CM021586.2 97.33 True local misassembly 25975985 25985692 25935298 25945006 NC_060943.1 CM021586.2 99.33 True local misassembly 25988575 25992225 25947889 25951539 NC_060943.1 CM021586.2 98.8 True local misassembly 25993023 26000558 25952337 25959872 NC_060943.1 CM021586.2 99.34 True fake: not a misassembly (possible transposable element) 25874808 25876263 25960116 25961571 NC_060943.1 CM021586.2 97.87 True fake: not a misassembly (possible transposable element) 26006332 26007324 25961572 25962562 NC_060943.1 CM021586.2 97.06 True indel: indel (<= 5bp) 26007395 26008635 25962632 25963872 NC_060943.1 CM021586.2 98.55 True local misassembly 26006000 26017919 25965313 25977233 NC_060943.1 CM021586.2 99.52 True fake: not a misassembly (possible transposable element) 29148100 29149936 25977234 25979071 NC_060943.1 CM021586.2 97.0 True fake: not a misassembly (possible transposable element) 26022316 26033261 25981630 25992575 NC_060943.1 CM021586.2 99.22 True relocation, inconsistency = 11565 26044827 26052549 25992576 26000298 NC_060943.1 CM021586.2 98.69 True relocation, inconsistency = 3071347 29123897 29128383 26000299 26004787 NC_060943.1 CM021586.2 98.09 True relocation, inconsistency = -3082908 26045476 26061001 26004788 26020311 NC_060943.1 CM021586.2 99.08 True local misassembly 26067004 26084721 26026311 26044025 NC_060943.1 CM021586.2 98.96 True relocation, inconsistency = -34696 26050026 26055884 26044026 26049882 NC_060943.1 CM021586.2 98.47 True relocation, inconsistency = -32311 26023574 26029293 26049883 26055601 NC_060943.1 CM021586.2 97.89 True relocation, inconsistency = 67008 26096302 26105452 26055602 26064752 NC_060943.1 CM021586.2 99.19 True fake: not a misassembly (possible transposable element) 26150358 26156382 26064753 26070785 NC_060943.1 CM021586.2 97.7 True fake: not a misassembly (possible transposable element) 26112148 26147100 26071445 26106395 NC_060943.1 CM021586.2 99.45 True indel: stretch of mismatches 26147101 26151637 26106396 26110934 NC_060943.1 CM021586.2 98.82 True indel: stretch of mismatches 26151638 26164453 26110935 26123754 NC_060943.1 CM021586.2 98.6 True local misassembly 26165509 26166061 26124812 26125364 NC_060943.1 CM021586.2 98.22 True relocation, inconsistency = 2480780 28646842 28648997 26125365 26127520 NC_060943.1 CM021586.2 98.05 True fake: not a misassembly (possible transposable element) 26052802 26056707 26127747 26131652 NC_060943.1 CM021586.2 98.11 True fake: not a misassembly (possible transposable element) 28652788 28654792 26131653 26133657 NC_060943.1 CM021586.2 97.56 True relocation, inconsistency = -2321622 26333171 26338649 26133658 26139136 NC_060943.1 CM021586.2 98.25 True relocation, inconsistency = -103382 26235514 26240571 26139383 26144439 NC_060943.1 CM021586.2 98.03 True relocation, inconsistency = -55440 26185132 26195112 26144440 26154421 NC_060943.1 CM021586.2 98.99 True indel: stretch of mismatches 26195113 26207840 26154422 26167150 NC_060943.1 CM021586.2 98.82 True local misassembly 26204098 26209295 26167151 26172346 NC_060943.1 CM021586.2 97.76 True relocation, inconsistency = 2525312 28735744 28741750 26173483 26179490 NC_060943.1 CM021586.2 97.15 True relocation, inconsistency = 405564 29147315 29149814 26179491 26181991 NC_060943.1 CM021586.2 97.54 True indel: indel (<= 5bp) 29150019 29154341 26182197 26186520 NC_060943.1 CM021586.2 97.96 True relocation, inconsistency = -20742 29133600 29135100 26186521 26188023 NC_060943.1 CM021586.2 98.0 True relocation, inconsistency = -2906386 26228715 26247460 26188024 26206772 NC_060943.1 CM021586.2 99.06 True indel: stretch of mismatches 26247461 26258714 26206773 26218025 NC_060943.1 CM021586.2 99.22 True local misassembly 26263135 26265149 26218026 26220040 NC_060943.1 CM021586.2 98.0 True local misassembly 26267738 26271188 26220926 26224376 NC_060943.1 CM021586.2 98.23 True relocation, inconsistency = -107470 26163719 26171001 26224377 26231658 NC_060943.1 CM021586.2 97.87 True relocation, inconsistency = 101348 26272350 26274891 26231659 26234200 NC_060943.1 CM021586.2 98.76 True relocation, inconsistency = -9180 26265712 26272541 26234201 26241033 NC_060943.1 CM021586.2 98.14 True relocation, inconsistency = 3167238 29441028 29446056 26242282 26247310 NC_060943.1 CM021586.2 97.02 True relocation, inconsistency = -3158055 26288156 26299264 26247465 26258572 NC_060943.1 CM021586.2 98.69 True relocation, inconsistency = 2700723 28999988 29006883 26258573 26265470 NC_060943.1 CM021586.2 97.2 True relocation, inconsistency = -2700720 26306164 26323681 26265471 26282986 NC_060943.1 CM021586.2 99.32 True relocation, inconsistency = 30266 26353948 26355093 26282987 26284133 NC_060943.1 CM021586.2 98.11 True relocation, inconsistency = 2289659 28647863 28652472 26287244 26291854 NC_060943.1 CM021586.2 97.53 True relocation, inconsistency = -2319921 26332552 26338726 26291855 26298027 NC_060943.1 CM021586.2 98.77 True indel: stretch of mismatches 26338727 26350751 26298028 26310053 NC_060943.1 CM021586.2 98.83 True fake: not a misassembly (possible transposable element) 26202133 26206987 26310054 26314909 NC_060943.1 CM021586.2 97.64 True fake: not a misassembly (possible transposable element) 26356146 26357563 26315115 26316532 NC_060943.1 CM021586.2 99.79 True local misassembly 26357564 26360347 26316873 26319656 NC_060943.1 CM021586.2 99.86 True indel: indel (<= 5bp) 26360348 26363554 26319658 26322864 NC_060943.1 CM021586.2 99.25 True indel: indel (<= 5bp) 26363725 26365027 26323040 26324342 NC_060943.1 CM021586.2 98.62 True local misassembly 26369126 26382132 26328441 26341450 NC_060943.1 CM021586.2 99.06 True fake: not a misassembly (possible transposable element) 26335222 26337068 26341451 26343292 NC_060943.1 CM021586.2 97.63 True fake: not a misassembly (possible transposable element) 26383975 26416465 26343293 26375782 NC_060943.1 CM021586.2 99.7 True relocation, inconsistency = 924980 27341543 27344543 26375880 26378880 NC_060943.1 CM021586.2 98.38 True relocation, inconsistency = -938583 26405961 26412944 26378881 26385862 NC_060943.1 CM021586.2 98.73 True relocation, inconsistency = 2056448 28469393 28477447 26385863 26393922 NC_060943.1 CM021586.2 97.9 True relocation, inconsistency = -2036382 26454757 26463879 26407614 26416736 NC_060943.1 CM021586.2 99.13 True local misassembly 26457420 26462099 26416737 26421076 NC_060943.1 CM021586.2 95.48 True relocation, inconsistency = 999065 27461165 27469135 26421077 26429051 NC_060943.1 CM021586.2 98.56 True local misassembly 27462340 27469135 26429052 26435851 NC_060943.1 CM021586.2 98.56 True relocation, inconsistency = -798822 26671027 26678059 26436565 26443597 NC_060943.1 CM021586.2 99.0 True relocation, inconsistency = -10200 26667860 26677050 26443598 26452788 NC_060943.1 CM021586.2 98.84 True relocation, inconsistency = -296466 26385094 26390629 26457298 26462833 NC_060943.1 CM021586.2 98.48 True relocation, inconsistency = 250906 26666017 26674007 26487315 26495305 NC_060943.1 CM021586.2 99.17 True relocation, inconsistency = -106416 26602557 26611882 26530271 26539596 NC_060943.1 CM021586.2 99.19 True relocation, inconsistency = 872934 27484817 27494386 26539597 26549165 NC_060943.1 CM021586.2 98.71 True relocation, inconsistency = 1117213 28611901 28617066 26549467 26554632 NC_060943.1 CM021586.2 99.11 True relocation, inconsistency = -1268811 27370454 27376293 26576831 26582671 NC_060943.1 CM021586.2 97.63 True relocation, inconsistency = 39417 27415711 27425255 26582672 26592216 NC_060943.1 CM021586.2 98.88 True relocation, inconsistency = 24480 27449736 27452377 26592217 26594858 NC_060943.1 CM021586.2 98.12 True relocation, inconsistency = -61856 27390522 27399217 26594859 26603560 NC_060943.1 CM021586.2 97.56 True relocation, inconsistency = 53362 27452844 27457605 26603825 26608586 NC_060943.1 CM021586.2 99.44 True relocation, inconsistency = -61522 27396084 27403797 26608587 26616304 NC_060943.1 CM021586.2 97.33 True relocation, inconsistency = 39090 27448564 27450090 26621981 26623507 NC_060943.1 CM021586.2 98.44 True relocation, inconsistency = 9180 27459271 27474331 26623508 26638568 NC_060943.1 CM021586.2 98.67 True local misassembly 27468896 27470889 26638569 26640562 NC_060943.1 CM021586.2 98.77 True relocation, inconsistency = -799838 26671052 26682536 26640563 26652043 NC_060943.1 CM021586.2 99.01 True local misassembly 26679137 26680546 26652044 26653453 NC_060943.1 CM021586.2 95.81 True relocation, inconsistency = 32300 26712847 26721384 26653454 26661991 NC_060943.1 CM021586.2 98.84 True relocation, inconsistency = -222687 26498698 26506024 26661992 26669326 NC_060943.1 CM021586.2 98.55 True relocation, inconsistency = 50999 26564388 26579346 26676691 26691648 NC_060943.1 CM021586.2 99.34 True relocation, inconsistency = 144156 26723503 26759884 26691649 26728030 NC_060943.1 CM021586.2 99.79 True fake: not a misassembly (possible transposable element) 27302058 27304490 26728031 26730463 NC_060943.1 CM021586.2 97.66 True fake: not a misassembly (possible transposable element) 26763036 26774574 26731183 26742722 NC_060943.1 CM021586.2 99.5 True relocation, inconsistency = -11218 26765546 26773923 26744912 26753291 NC_060943.1 CM021586.2 99.19 True relocation, inconsistency = 1474154 28295559 28296209 26800773 26801423 NC_060943.1 CM021586.2 97.32 True relocation, inconsistency = -1462945 26833265 26853131 26801424 26821293 NC_060943.1 CM021586.2 99.55 True relocation, inconsistency = 2720837 29573969 29575146 26821294 26822471 NC_060943.1 CM021586.2 96.37 True local misassembly 29569416 29573835 26823201 26827620 NC_060943.1 CM021586.2 96.07 True relocation, inconsistency = -8160 29565676 29572652 26827621 26834593 NC_060943.1 CM021586.2 95.98 True relocation, inconsistency = -2706220 26866433 26907482 26834594 26875643 NC_060943.1 CM021586.2 99.85 True fake: not a misassembly (possible transposable element) 27254881 27260526 26875644 26881289 NC_060943.1 CM021586.2 97.45 True fake: not a misassembly (possible transposable element) 26913128 26928152 26881290 26896316 NC_060943.1 CM021586.2 99.35 True relocation, inconsistency = 167922 27096075 27103244 26896317 26903486 NC_060943.1 CM021586.2 99.14 True relocation, inconsistency = 826284 27996128 28002683 26970086 26976640 NC_060943.1 CM021586.2 97.71 True relocation, inconsistency = -1134269 26868659 26869167 26976885 26977393 NC_060943.1 CM021586.2 97.64 True indel: stretch of mismatches 26869343 26870526 26977569 26978752 NC_060943.1 CM021586.2 98.56 True indel: indel (<= 5bp) 26870528 26872471 26978753 26980696 NC_060943.1 CM021586.2 99.07 True local misassembly 26872812 26875462 26980697 26983347 NC_060943.1 CM021586.2 98.49 True indel: indel (<= 5bp) 26875463 26878859 26983349 26986745 NC_060943.1 CM021586.2 98.94 True local misassembly 26878860 26881914 26987087 26990141 NC_060943.1 CM021586.2 98.57 True relocation, inconsistency = -314453 26567462 26574946 26990142 26997624 NC_060943.1 CM021586.2 98.22 True relocation, inconsistency = 465376 27040323 27048912 26997625 27006212 NC_060943.1 CM021586.2 98.54 True relocation, inconsistency = -29911 27019002 27021113 27006213 27008324 NC_060943.1 CM021586.2 99.64 True local misassembly 27021114 27021839 27008666 27009391 NC_060943.1 CM021586.2 97.47 True relocation, inconsistency = -180834 26841006 26855334 27009392 27023725 NC_060943.1 CM021586.2 98.51 True relocation, inconsistency = 311710 27167132 27172894 27023813 27029915 NC_060943.1 CM021586.2 95.37 True relocation, inconsistency = -101982 27070913 27081544 27029916 27040880 NC_060943.1 CM021586.2 95.94 True relocation, inconsistency = 21757 27108137 27114166 27045716 27051738 NC_060943.1 CM021586.2 98.09 True relocation, inconsistency = 49970 27164234 27172146 27051836 27059747 NC_060943.1 CM021586.2 98.04 True relocation, inconsistency = 1638680 28810827 28812350 27059748 27061270 NC_060943.1 CM021586.2 96.76 True relocation, inconsistency = -1730805 27092778 27100524 27072503 27080246 NC_060943.1 CM021586.2 99.25 True relocation, inconsistency = 1820235 28921347 28925144 27080834 27084632 NC_060943.1 CM021586.2 97.42 True relocation, inconsistency = 585141 29572096 29573672 27146443 27148019 NC_060943.1 CM021586.2 96.45 True relocation, inconsistency = -2405388 27168285 27177742 27148020 27157481 NC_060943.1 CM021586.2 99.22 True indel: stretch of mismatches 27177743 27186307 27157482 27166046 NC_060943.1 CM021586.2 99.03 True relocation, inconsistency = 27863 27214214 27228720 27166090 27180595 NC_060943.1 CM021586.2 98.39 True relocation, inconsistency = -17680 27211041 27218424 27180596 27187979 NC_060943.1 CM021586.2 98.4 True relocation, inconsistency = 355906 27574331 27576898 27187980 27190548 NC_060943.1 CM021586.2 97.92 True relocation, inconsistency = -370181 27206718 27219294 27190549 27203464 NC_060943.1 CM021586.2 95.73 True local misassembly 27223730 27315002 27203480 27294743 NC_060943.1 CM021586.2 98.86 True relocation, inconsistency = -415053 26899950 26903194 27294744 27297991 NC_060943.1 CM021586.2 98.43 True relocation, inconsistency = 759387 27662582 27672847 27297992 27308598 NC_060943.1 CM021586.2 95.26 True relocation, inconsistency = -335832 27337016 27338764 27308599 27310347 NC_060943.1 CM021586.2 98.99 True relocation, inconsistency = -8160 27330605 27339395 27310348 27319138 NC_060943.1 CM021586.2 98.91 True local misassembly 27337016 27337780 27319139 27319903 NC_060943.1 CM021586.2 98.99 True local misassembly 27335061 27338715 27319904 27323558 NC_060943.1 CM021586.2 99.04 True local misassembly 27343475 27345621 27323559 27325705 NC_060943.1 CM021586.2 98.14 True indel: indel (<= 5bp) 27345623 27348532 27325706 27328615 NC_060943.1 CM021586.2 97.15 True local misassembly 27348873 27356757 27328616 27336500 NC_060943.1 CM021586.2 99.07 True local misassembly 27362537 27376241 27336501 27350546 NC_060943.1 CM021586.2 96.26 True relocation, inconsistency = 44849 27421091 27424023 27350547 27353479 NC_060943.1 CM021586.2 98.41 True relocation, inconsistency = -20730 27403294 27416532 27353480 27366720 NC_060943.1 CM021586.2 98.52 True local misassembly 27412793 27415551 27366721 27369479 NC_060943.1 CM021586.2 98.46 True local misassembly 27415892 27417438 27369480 27371026 NC_060943.1 CM021586.2 99.68 True local misassembly 27418119 27427550 27371027 27380458 NC_060943.1 CM021586.2 98.82 True relocation, inconsistency = 292686 27720237 27723662 27380459 27383885 NC_060943.1 CM021586.2 98.2 True relocation, inconsistency = -277385 27446278 27458019 27383886 27395287 NC_060943.1 CM021586.2 96.46 True local misassembly 27453260 27457198 27395288 27399226 NC_060943.1 CM021586.2 99.14 True relocation, inconsistency = -10880 27446319 27459595 27399227 27412155 NC_060943.1 CM021586.2 95.66 True relocation, inconsistency = -49292 27410304 27418919 27412156 27420779 NC_060943.1 CM021586.2 97.6 True relocation, inconsistency = -54367 27366830 27375256 27423057 27431485 NC_060943.1 CM021586.2 97.95 True relocation, inconsistency = 69329 27446381 27455090 27433281 27441990 NC_060943.1 CM021586.2 98.9 True relocation, inconsistency = -36716 27418375 27424898 27441991 27448517 NC_060943.1 CM021586.2 98.32 True relocation, inconsistency = 21420 27446319 27459595 27448518 27461446 NC_060943.1 CM021586.2 95.67 True relocation, inconsistency = -26180 27433416 27436323 27461447 27464354 NC_060943.1 CM021586.2 99.09 True relocation, inconsistency = 12240 27448564 27459595 27464355 27475044 NC_060943.1 CM021586.2 96.12 True local misassembly 27454836 27457198 27475045 27477407 NC_060943.1 CM021586.2 99.09 True relocation, inconsistency = -46232 27410967 27418038 27477408 27484477 NC_060943.1 CM021586.2 98.4 True relocation, inconsistency = -57433 27360606 27364602 27484478 27488475 NC_060943.1 CM021586.2 98.67 True relocation, inconsistency = 73406 27438009 27442270 27488476 27492737 NC_060943.1 CM021586.2 98.57 True relocation, inconsistency = 17000 27459271 27474331 27492738 27507798 NC_060943.1 CM021586.2 98.62 True local misassembly 27468896 27470889 27507799 27509792 NC_060943.1 CM021586.2 98.77 True relocation, inconsistency = -799838 26671052 26682536 27509793 27521273 NC_060943.1 CM021586.2 99.02 True local misassembly 26679137 26680675 27521274 27522812 NC_060943.1 CM021586.2 95.83 True relocation, inconsistency = 32300 26712976 26720319 27522813 27530156 NC_060943.1 CM021586.2 98.93 True relocation, inconsistency = 748162 27468482 27479931 27530157 27541610 NC_060943.1 CM021586.2 99.18 True relocation, inconsistency = -772298 26722732 26727813 27556709 27561790 NC_060943.1 CM021586.2 98.34 True local misassembly 26725094 26738624 27561791 27575321 NC_060943.1 CM021586.2 98.84 True local misassembly 26741005 26742490 27575322 27576807 NC_060943.1 CM021586.2 98.54 True relocation, inconsistency = 772974 27515874 27521633 27577217 27582975 NC_060943.1 CM021586.2 95.66 True local misassembly 27518234 27527840 27582976 27592582 NC_060943.1 CM021586.2 98.91 True local misassembly 27526482 27537006 27592583 27603105 NC_060943.1 CM021586.2 98.95 True relocation, inconsistency = 26852 27563859 27565159 27603106 27604406 NC_060943.1 CM021586.2 99.0 True relocation, inconsistency = -491867 27073293 27078740 27604407 27609855 NC_060943.1 CM021586.2 99.04 True relocation, inconsistency = 1173023 28251764 28257268 27609856 27615365 NC_060943.1 CM021586.2 97.89 True relocation, inconsistency = -1152281 27109982 27116221 27620360 27626599 NC_060943.1 CM021586.2 98.65 True relocation, inconsistency = 446312 27562534 27564815 27626600 27628881 NC_060943.1 CM021586.2 98.81 True local misassembly 27560396 27566540 27628882 27635024 NC_060943.1 CM021586.2 98.59 True indel: stretch of mismatches 27566541 27575516 27635025 27644001 NC_060943.1 CM021586.2 98.82 True local misassembly 27572462 27574684 27644002 27646224 NC_060943.1 CM021586.2 98.41 True relocation, inconsistency = -8155 27566530 27575790 27646225 27655145 NC_060943.1 CM021586.2 95.14 True relocation, inconsistency = 45552 27628477 27636470 27662280 27670272 NC_060943.1 CM021586.2 99.19 True local misassembly 27642588 27643685 27670273 27671370 NC_060943.1 CM021586.2 99.38 True local misassembly 27653730 27661519 27687198 27694987 NC_060943.1 CM021586.2 99.1 True local misassembly 27656421 27657735 27694988 27696302 NC_060943.1 CM021586.2 98.89 True local misassembly 27651957 27664959 27696303 27708966 NC_060943.1 CM021586.2 96.25 True local misassembly 27662114 27665846 27709180 27712913 NC_060943.1 CM021586.2 98.38 True local misassembly 27667887 27674820 27712914 27719847 NC_060943.1 CM021586.2 98.59 True local misassembly 27675501 27680845 27719848 27725192 NC_060943.1 CM021586.2 99.03 True local misassembly 27687646 27698348 27725193 27735894 NC_060943.1 CM021586.2 98.94 True relocation, inconsistency = -243389 27454960 27464135 27735895 27745074 NC_060943.1 CM021586.2 97.45 True relocation, inconsistency = 224692 27688828 27693862 27745075 27749973 NC_060943.1 CM021586.2 95.46 True local misassembly 27686927 27698348 27749974 27761054 NC_060943.1 CM021586.2 96.3 True local misassembly 27700729 27707120 27761055 27767446 NC_060943.1 CM021586.2 98.47 True local misassembly 27708481 27711447 27767447 27770413 NC_060943.1 CM021586.2 99.34 True local misassembly 27712808 27714636 27770414 27772242 NC_060943.1 CM021586.2 99.95 True indel: indel (<= 5bp) 27714641 27719056 27772243 27776658 NC_060943.1 CM021586.2 99.82 True indel: indel (<= 5bp) 27719057 27720833 27776661 27778437 NC_060943.1 CM021586.2 99.83 True local misassembly 27721943 27725103 27778867 27782027 NC_060943.1 CM021586.2 99.37 True local misassembly 27725104 27726659 27782368 27783923 NC_060943.1 CM021586.2 99.81 True relocation, inconsistency = 48270 27774930 27781654 27783924 27790648 NC_060943.1 CM021586.2 98.73 True relocation, inconsistency = 14960 27796615 27804884 27790649 27798918 NC_060943.1 CM021586.2 99.07 True relocation, inconsistency = 1243051 29047936 29053071 27798919 27804050 NC_060943.1 CM021586.2 99.05 True relocation, inconsistency = -1262091 27798174 27807264 27811244 27820334 NC_060943.1 CM021586.2 99.13 True relocation, inconsistency = -439181 27368084 27372290 27820335 27824542 NC_060943.1 CM021586.2 97.74 True relocation, inconsistency = 464675 27836966 27846150 27824543 27833729 NC_060943.1 CM021586.2 98.89 True relocation, inconsistency = -23455 27823172 27825491 27834206 27836525 NC_060943.1 CM021586.2 99.78 True local misassembly 27825832 27831969 27836526 27842663 NC_060943.1 CM021586.2 99.8 True local misassembly 27831970 27834074 27843004 27845108 NC_060943.1 CM021586.2 98.92 True local misassembly 27829315 27835512 27845109 27851306 NC_060943.1 CM021586.2 98.53 True relocation, inconsistency = -102665 27733817 27736143 27852276 27854604 NC_060943.1 CM021586.2 98.85 True relocation, inconsistency = 114902 27851046 27860985 27854605 27864546 NC_060943.1 CM021586.2 98.78 True relocation, inconsistency = 17654 27878640 27880443 27864547 27866350 NC_060943.1 CM021586.2 99.57 True local misassembly 27880784 27882107 27866351 27867674 NC_060943.1 CM021586.2 99.7 True local misassembly 27882940 27885040 27868166 27870266 NC_060943.1 CM021586.2 97.72 True local misassembly 27885075 27887672 27870642 27873239 NC_060943.1 CM021586.2 98.82 True relocation, inconsistency = 230127 28117800 28126271 27873240 27881707 NC_060943.1 CM021586.2 97.94 True relocation, inconsistency = -226051 27900276 27900797 27881763 27882284 NC_060943.1 CM021586.2 96.55 True indel: indel (<= 5bp) 27900798 27904340 27882286 27885828 NC_060943.1 CM021586.2 98.99 True local misassembly 27897886 27913694 27885829 27901299 NC_060943.1 CM021586.2 96.96 True local misassembly 27920150 27924588 27901300 27905742 NC_060943.1 CM021586.2 98.88 True local misassembly 27923909 27935102 27905743 27916937 NC_060943.1 CM021586.2 98.8 True local misassembly 27932045 27935991 27916938 27920884 NC_060943.1 CM021586.2 99.6 True local misassembly 27935992 27938293 27921225 27923526 NC_060943.1 CM021586.2 98.52 True local misassembly 27934555 27936026 27923527 27924998 NC_060943.1 CM021586.2 98.72 True local misassembly 27936367 27939087 27924999 27927719 NC_060943.1 CM021586.2 99.78 True indel: indel (<= 5bp) 27939088 27941011 27927722 27929645 NC_060943.1 CM021586.2 99.69 True local misassembly 27941352 27942803 27929646 27931097 NC_060943.1 CM021586.2 98.74 True relocation, inconsistency = -54699 27888105 27891425 27931098 27934422 NC_060943.1 CM021586.2 97.52 True local misassembly 27897886 27913694 27934423 27949898 NC_060943.1 CM021586.2 96.92 True local misassembly 27920150 27924588 27949899 27954341 NC_060943.1 CM021586.2 98.88 True local misassembly 27923909 27935102 27954342 27965536 NC_060943.1 CM021586.2 98.8 True local misassembly 27932045 27935991 27965537 27969483 NC_060943.1 CM021586.2 99.6 True local misassembly 27935992 27938293 27969824 27972125 NC_060943.1 CM021586.2 98.52 True local misassembly 27934555 27936026 27972126 27973597 NC_060943.1 CM021586.2 98.72 True local misassembly 27936367 27939087 27973598 27976318 NC_060943.1 CM021586.2 99.78 True indel: indel (<= 5bp) 27939088 27939807 27976321 27977040 NC_060943.1 CM021586.2 99.69 True relocation, inconsistency = 11219 27951027 27959859 27977041 27985533 NC_060943.1 CM021586.2 95.53 True relocation, inconsistency = -41474 27934596 27945365 28001744 28012174 NC_060943.1 CM021586.2 95.88 True local misassembly 27947405 27948923 28012175 28013693 NC_060943.1 CM021586.2 99.18 True relocation, inconsistency = 28896 28001213 28007266 28037087 28043140 NC_060943.1 CM021586.2 98.81 True relocation, inconsistency = 61193 28071465 28076959 28046146 28051640 NC_060943.1 CM021586.2 98.47 True relocation, inconsistency = -70033 28007815 28012260 28052529 28056974 NC_060943.1 CM021586.2 99.64 True local misassembly 28011581 28021519 28056975 28066568 NC_060943.1 CM021586.2 95.53 True relocation, inconsistency = -16999 28004521 28005856 28066569 28067904 NC_060943.1 CM021586.2 98.83 True local misassembly 28005517 28012260 28067905 28074648 NC_060943.1 CM021586.2 99.59 True relocation, inconsistency = 322218 28334479 28347506 28074649 28087685 NC_060943.1 CM021586.2 98.1 True relocation, inconsistency = -25818 28321689 28325639 28087686 28091636 NC_060943.1 CM021586.2 98.77 True relocation, inconsistency = -306922 28018718 28025193 28091637 28098112 NC_060943.1 CM021586.2 99.15 True relocation, inconsistency = 10540 28035734 28046208 28098113 28108587 NC_060943.1 CM021586.2 98.95 True relocation, inconsistency = -21758 28024670 28032442 28108807 28116579 NC_060943.1 CM021586.2 98.44 True relocation, inconsistency = 13598 28046069 28055046 28116608 28125586 NC_060943.1 CM021586.2 98.59 True relocation, inconsistency = -62554 28024672 28031375 28157766 28164469 NC_060943.1 CM021586.2 98.25 True relocation, inconsistency = 239607 28318533 28321914 28212020 28215402 NC_060943.1 CM021586.2 98.63 True relocation, inconsistency = -197797 28124118 28136026 28215403 28227307 NC_060943.1 CM021586.2 99.06 True relocation, inconsistency = 31612 28167639 28176871 28227308 28236196 NC_060943.1 CM021586.2 95.96 True relocation, inconsistency = 10875 28187891 28196189 28236341 28244639 NC_060943.1 CM021586.2 99.48 True relocation, inconsistency = -11895 28184295 28186478 28244640 28246823 NC_060943.1 CM021586.2 98.26 True local misassembly 28186819 28187765 28246824 28247770 NC_060943.1 CM021586.2 99.47 True local misassembly 28187766 28193897 28248114 28254245 NC_060943.1 CM021586.2 99.05 True local misassembly 28200285 28206150 28254851 28260716 NC_060943.1 CM021586.2 99.15 True relocation, inconsistency = 198441 28407647 28420375 28263772 28276847 NC_060943.1 CM021586.2 96.03 True local misassembly 28418677 28425266 28276848 28283437 NC_060943.1 CM021586.2 98.51 True local misassembly 28423105 28426783 28285356 28289034 NC_060943.1 CM021586.2 98.28 True local misassembly 28424065 28434408 28289035 28299378 NC_060943.1 CM021586.2 98.37 True relocation, inconsistency = -10193 28424379 28432782 28299542 28307947 NC_060943.1 CM021586.2 98.07 True relocation, inconsistency = -204544 28228551 28232491 28308260 28312200 NC_060943.1 CM021586.2 98.86 True local misassembly 28238124 28244428 28312394 28318698 NC_060943.1 CM021586.2 97.99 True relocation, inconsistency = 175659 28420088 28421410 28318699 28320021 NC_060943.1 CM021586.2 97.33 True relocation, inconsistency = -167165 28254246 28262004 28320022 28327781 NC_060943.1 CM021586.2 97.93 True local misassembly 28268460 28270002 28327782 28329324 NC_060943.1 CM021586.2 98.61 True indel: indel (<= 5bp) 28270003 28272185 28329329 28331511 NC_060943.1 CM021586.2 96.92 True relocation, inconsistency = -424828 27847358 27854530 28331512 28338683 NC_060943.1 CM021586.2 97.34 True relocation, inconsistency = 424148 28279150 28286825 28339155 28346830 NC_060943.1 CM021586.2 99.13 True local misassembly 28287671 28289356 28347341 28349026 NC_060943.1 CM021586.2 99.53 True relocation, inconsistency = -7473 28289357 28294584 28356500 28361727 NC_060943.1 CM021586.2 99.33 True relocation, inconsistency = -36017 28258568 28273349 28361728 28376850 NC_060943.1 CM021586.2 95.82 True relocation, inconsistency = -1329373 26943977 26949836 28376851 28382711 NC_060943.1 CM021586.2 97.71 True relocation, inconsistency = 1347721 28297581 28300870 28382735 28386024 NC_060943.1 CM021586.2 99.89 True local misassembly 28299511 28316232 28386025 28402745 NC_060943.1 CM021586.2 99.03 True relocation, inconsistency = -23452 28293025 28314209 28402990 28424514 NC_060943.1 CM021586.2 97.95 True fake: not a misassembly (possible transposable element) 28074257 28077065 28424515 28427323 NC_060943.1 CM021586.2 98.49 True fake: not a misassembly (possible transposable element) 28317019 28324518 28427324 28434825 NC_060943.1 CM021586.2 99.08 True relocation, inconsistency = 29892 28360315 28360957 28440730 28441372 NC_060943.1 CM021586.2 97.57 True local misassembly 28364013 28372303 28441373 28449667 NC_060943.1 CM021586.2 98.46 True relocation, inconsistency = -32943 28339425 28351408 28449732 28461374 NC_060943.1 CM021586.2 96.43 True relocation, inconsistency = 19021 28370430 28372178 28461375 28463123 NC_060943.1 CM021586.2 99.29 True local misassembly 28372519 28376027 28463124 28466632 NC_060943.1 CM021586.2 98.95 True local misassembly 28370339 28372178 28467059 28468898 NC_060943.1 CM021586.2 99.35 True local misassembly 28372519 28381836 28468899 28478216 NC_060943.1 CM021586.2 99.86 True relocation, inconsistency = -178382 28203455 28206917 28478217 28481679 NC_060943.1 CM021586.2 99.48 True relocation, inconsistency = -27533 28179834 28187245 28482129 28489540 NC_060943.1 CM021586.2 98.22 True relocation, inconsistency = 205914 28407716 28420312 28504097 28517039 NC_060943.1 CM021586.2 96.14 True local misassembly 28418614 28425266 28517040 28523692 NC_060943.1 CM021586.2 98.65 True local misassembly 28426597 28430831 28524344 28528580 NC_060943.1 CM021586.2 97.99 True local misassembly 28425055 28425764 28528581 28529290 NC_060943.1 CM021586.2 98.22 True local misassembly 28424065 28435122 28529291 28540348 NC_060943.1 CM021586.2 98.8 True relocation, inconsistency = -242950 28192173 28192701 28540349 28540877 NC_060943.1 CM021586.2 98.44 True local misassembly 28193042 28196189 28540878 28544025 NC_060943.1 CM021586.2 98.16 True indel: indel (<= 5bp) 28196190 28198042 28544027 28545879 NC_060943.1 CM021586.2 98.55 True relocation, inconsistency = -53025 28145018 28152586 28545880 28553454 NC_060943.1 CM021586.2 97.64 True relocation, inconsistency = 322836 28475423 28493281 28553455 28570975 NC_060943.1 CM021586.2 97.26 True relocation, inconsistency = 7140 28500422 28502868 28570976 28573422 NC_060943.1 CM021586.2 99.75 True local misassembly 28505928 28510401 28573423 28577896 NC_060943.1 CM021586.2 99.8 True local misassembly 28510742 28515877 28577897 28583032 NC_060943.1 CM021586.2 98.89 True local misassembly 28513498 28517092 28583033 28586627 NC_060943.1 CM021586.2 98.41 True local misassembly 28522533 28524300 28586628 28588395 NC_060943.1 CM021586.2 99.03 True local misassembly 28518861 28523710 28588396 28593245 NC_060943.1 CM021586.2 98.37 True relocation, inconsistency = -1326940 27196771 27204692 28593246 28601168 NC_060943.1 CM021586.2 98.03 True relocation, inconsistency = -740714 26463979 26469154 28601169 28606339 NC_060943.1 CM021586.2 97.59 True relocation, inconsistency = 813125 27282401 27286397 28606461 28610457 NC_060943.1 CM021586.2 98.22 True relocation, inconsistency = 1251472 28537870 28542617 28610458 28615203 NC_060943.1 CM021586.2 97.31 True local misassembly 28536158 28547623 28615204 28626665 NC_060943.1 CM021586.2 98.42 True fake: not a misassembly (possible transposable element) 28534364 28538711 28626666 28631013 NC_060943.1 CM021586.2 97.77 True fake: not a misassembly (possible transposable element) 28548912 28551291 28631014 28633392 NC_060943.1 CM021586.2 97.95 True local misassembly 28554353 28562365 28633393 28641406 NC_060943.1 CM021586.2 98.14 True local misassembly 28560666 28606634 28641407 28685674 NC_060943.1 CM021586.2 96.01 True local misassembly 28605955 28607701 28685675 28687421 NC_060943.1 CM021586.2 99.17 True local misassembly 28608382 28610809 28687422 28689849 NC_060943.1 CM021586.2 99.06 True relocation, inconsistency = -9859 28600951 28608327 28689850 28697227 NC_060943.1 CM021586.2 98.03 True relocation, inconsistency = 9859 28620368 28630946 28699409 28709991 NC_060943.1 CM021586.2 98.97 True indel: stretch of mismatches 28630947 28638385 28709992 28717432 NC_060943.1 CM021586.2 99.46 True local misassembly 28634987 28637666 28717433 28720114 NC_060943.1 CM021586.2 98.8 True relocation, inconsistency = 7479 28645146 28651727 28720115 28726695 NC_060943.1 CM021586.2 98.31 True local misassembly 28647646 28656543 28726696 28735593 NC_060943.1 CM021586.2 98.88 True indel: stretch of mismatches 28656544 28673142 28735594 28752195 NC_060943.1 CM021586.2 99.23 True local misassembly 28671442 28674500 28752196 28755254 NC_060943.1 CM021586.2 97.48 True local misassembly 28676754 28711813 28755808 28790862 NC_060943.1 CM021586.2 97.32 True relocation, inconsistency = 10540 28722354 28723056 28790863 28791565 NC_060943.1 CM021586.2 96.99 True indel: indel (<= 5bp) 28723058 28724182 28791566 28792690 NC_060943.1 CM021586.2 98.53 True local misassembly 28725883 28733363 28792691 28800170 NC_060943.1 CM021586.2 97.95 True relocation, inconsistency = -12241 28721123 28885950 28800171 28964983 NC_060943.1 CM021586.2 99.81 True relocation, inconsistency = 303918 29189869 29190558 28964984 28965673 NC_060943.1 CM021586.2 97.27 True relocation, inconsistency = 8161 29200097 29207576 28967051 28974529 NC_060943.1 CM021586.2 97.93 True relocation, inconsistency = -312081 28916446 28987216 28995480 29066254 NC_060943.1 CM021586.2 99.43 True fake: not a misassembly (possible transposable element) 26163044 26167204 29066255 29070415 NC_060943.1 CM021586.2 97.4 True fake: not a misassembly (possible transposable element) 28991376 28998778 29070416 29077818 NC_060943.1 CM021586.2 98.51 True local misassembly 28999539 29134762 29078579 29213807 NC_060943.1 CM021586.2 99.68 True relocation, inconsistency = -2880540 26254522 26255396 29214107 29214981 NC_060943.1 CM021586.2 96.25 True relocation, inconsistency = 17000 26272397 26276367 29214982 29218950 NC_060943.1 CM021586.2 97.86 True local misassembly 26277729 26279136 29218951 29220358 NC_060943.1 CM021586.2 98.76 True relocation, inconsistency = 2862176 29141313 29150106 29220359 29229152 NC_060943.1 CM021586.2 98.52 True fake: not a misassembly (possible transposable element) 28642196 28644413 29229153 29231371 NC_060943.1 CM021586.2 97.86 True fake: not a misassembly (possible transposable element) 29152325 29160313 29231372 29239360 NC_060943.1 CM021586.2 97.89 True local misassembly 29155213 29166089 29239361 29250236 NC_060943.1 CM021586.2 97.21 True local misassembly 29171191 29180973 29250237 29260019 NC_060943.1 CM021586.2 98.31 True indel: stretch of mismatches 29180974 29186186 29260020 29265232 NC_060943.1 CM021586.2 98.51 True relocation, inconsistency = -3024736 26163861 26170938 29267643 29274720 NC_060943.1 CM021586.2 97.78 True relocation, inconsistency = 3016915 29216347 29219481 29303214 29306348 NC_060943.1 CM021586.2 97.73 True relocation, inconsistency = 7816 29227298 29246287 29306349 29325345 NC_060943.1 CM021586.2 99.3 True local misassembly 29246998 29252298 29326057 29331364 NC_060943.1 CM021586.2 98.81 True indel: indel (<= 5bp) 29252534 29256671 29331601 29335738 NC_060943.1 CM021586.2 99.88 True local misassembly 29257809 29259864 29336536 29338590 NC_060943.1 CM021586.2 95.91 True local misassembly 29261489 29268197 29340559 29347275 NC_060943.1 CM021586.2 98.72 True indel: stretch of mismatches 29268586 29298732 29347664 29378494 NC_060943.1 CM021586.2 97.15 True local misassembly 29299509 29301831 29379271 29381593 NC_060943.1 CM021586.2 98.84 True local misassembly 29302959 29323195 29382041 29402277 NC_060943.1 CM021586.2 99.62 True local misassembly 29323536 29328336 29402278 29407078 NC_060943.1 CM021586.2 97.85 True local misassembly 29328677 29330158 29407079 29408560 NC_060943.1 CM021586.2 99.53 True local misassembly 29330499 29333610 29408561 29411672 NC_060943.1 CM021586.2 99.33 True local misassembly 29333611 29336020 29412013 29414422 NC_060943.1 CM021586.2 98.3 True relocation, inconsistency = -71052 29266788 29268345 29416242 29417799 NC_060943.1 CM021586.2 98.52 True local misassembly 29268346 29269009 29418140 29418803 NC_060943.1 CM021586.2 98.49 True indel: indel (<= 5bp) 29269010 29269884 29418808 29419682 NC_060943.1 CM021586.2 98.42 True relocation, inconsistency = 85336 29355221 29357557 29419683 29422019 NC_060943.1 CM021586.2 97.86 True local misassembly 29358157 29360455 29422284 29424582 NC_060943.1 CM021586.2 99.47 True relocation, inconsistency = 7480 29367936 29376118 29424583 29432764 NC_060943.1 CM021586.2 98.31 True local misassembly 29369999 29371825 29432765 29434591 NC_060943.1 CM021586.2 98.8 True local misassembly 29373526 29376334 29434592 29437400 NC_060943.1 CM021586.2 98.08 True local misassembly 29371915 29379435 29437401 29444923 NC_060943.1 CM021586.2 98.34 True local misassembly 29375860 29376365 29445086 29445591 NC_060943.1 CM021586.2 98.02 True local misassembly 29373646 29380243 29445592 29452193 NC_060943.1 CM021586.2 96.86 True fake: not a misassembly (possible transposable element) 29509924 29513089 29452194 29455359 NC_060943.1 CM021586.2 97.24 True fake: not a misassembly (possible transposable element) 29384880 29389707 29455474 29460302 NC_060943.1 CM021586.2 97.02 True indel: stretch of mismatches 29389984 29392684 29460579 29463277 NC_060943.1 CM021586.2 96.85 True local misassembly 29393494 29400103 29464085 29470695 NC_060943.1 CM021586.2 96.66 True relocation, inconsistency = -7480 29392624 29397359 29470696 29475431 NC_060943.1 CM021586.2 99.38 True local misassembly 29397360 29399124 29475772 29477536 NC_060943.1 CM021586.2 97.28 True local misassembly 29399125 29401164 29477877 29479916 NC_060943.1 CM021586.2 96.72 True local misassembly 29401505 29404713 29479917 29483125 NC_060943.1 CM021586.2 96.39 True local misassembly 29405054 29406543 29483126 29484615 NC_060943.1 CM021586.2 97.32 True indel: stretch of mismatches 29406870 29408967 29484942 29487039 NC_060943.1 CM021586.2 97.04 True local misassembly 29408968 29410628 29487380 29489040 NC_060943.1 CM021586.2 97.11 True local misassembly 29410629 29415297 29489381 29494049 NC_060943.1 CM021586.2 96.7 True local misassembly 29415469 29418938 29494050 29497519 NC_060943.1 CM021586.2 96.63 True relocation, inconsistency = 21081 29440701 29445528 29498201 29503028 NC_060943.1 CM021586.2 96.65 True local misassembly 29446209 29456511 29503029 29513333 NC_060943.1 CM021586.2 98.61 True local misassembly 29451754 29453600 29513334 29515180 NC_060943.1 CM021586.2 96.81 True indel: indel (<= 5bp) 29453601 29454777 29515182 29516358 NC_060943.1 CM021586.2 96.87 True local misassembly 29451039 29452306 29516359 29517626 NC_060943.1 CM021586.2 97.63 True local misassembly 29452307 29453602 29517967 29519262 NC_060943.1 CM021586.2 97.84 True local misassembly 29453996 29455980 29519317 29521301 NC_060943.1 CM021586.2 97.38 True local misassembly 29455981 29459414 29521642 29525075 NC_060943.1 CM021586.2 99.88 True local misassembly 29459415 29460490 29525756 29526831 NC_060943.1 CM021586.2 99.54 True indel: indel (<= 5bp) 29460492 29464987 29526832 29531327 NC_060943.1 CM021586.2 98.87 True local misassembly 29465708 29466371 29531716 29532379 NC_060943.1 CM021586.2 97.89 True relocation, inconsistency = -18005 29448596 29450760 29532609 29534773 NC_060943.1 CM021586.2 98.85 True local misassembly 29451101 29453602 29534774 29537275 NC_060943.1 CM021586.2 99.32 True indel: indel (<= 5bp) 29453603 29455301 29537277 29538975 NC_060943.1 CM021586.2 96.29 True local misassembly 29455714 29456320 29539729 29540335 NC_060943.1 CM021586.2 97.53 True fake: not a misassembly (possible transposable element) 29281060 29283289 29540659 29542888 NC_060943.1 CM021586.2 95.92 True fake: not a misassembly (possible transposable element) 29455374 29459414 29544827 29548867 NC_060943.1 CM021586.2 99.28 True local misassembly 29459415 29460490 29549548 29550623 NC_060943.1 CM021586.2 99.54 True indel: indel (<= 5bp) 29460492 29462976 29550624 29553108 NC_060943.1 CM021586.2 99.03 True local misassembly 29459578 29461248 29553109 29554779 NC_060943.1 CM021586.2 99.17 True indel: indel (<= 5bp) 29461253 29462577 29554780 29556104 NC_060943.1 CM021586.2 99.7 True relocation, inconsistency = 10527 29473567 29481968 29556567 29564965 NC_060943.1 CM021586.2 99.0 True relocation, inconsistency = -7135 29474834 29480848 29564966 29570974 NC_060943.1 CM021586.2 99.35 True local misassembly 29479149 29486883 29570975 29578706 NC_060943.1 CM021586.2 97.82 True local misassembly 29481783 29483388 29578707 29580312 NC_060943.1 CM021586.2 96.32 True indel: indel (<= 5bp) 29483675 29486695 29580597 29583617 NC_060943.1 CM021586.2 99.3 True local misassembly 29487151 29491270 29584752 29588871 NC_060943.1 CM021586.2 99.85 True local misassembly 29491271 29492325 29589212 29590266 NC_060943.1 CM021586.2 99.72 True local misassembly 29492666 29495723 29590267 29593324 NC_060943.1 CM021586.2 98.01 True local misassembly 29495724 29497966 29593665 29595907 NC_060943.1 CM021586.2 95.76 True local misassembly 29498307 29498874 29595908 29596475 NC_060943.1 CM021586.2 97.54 True local misassembly 29499215 29503456 29596476 29600717 NC_060943.1 CM021586.2 99.13 True local misassembly 29500712 29501551 29601033 29601872 NC_060943.1 CM021586.2 97.98 True local misassembly 29501552 29502832 29602213 29603493 NC_060943.1 CM021586.2 97.66 True local misassembly 29502833 29504887 29603834 29605888 NC_060943.1 CM021586.2 96.64 True local misassembly 29504888 29507133 29606229 29608474 NC_060943.1 CM021586.2 96.75 True local misassembly 29507509 29511242 29609529 29613262 NC_060943.1 CM021586.2 99.46 True indel: indel (<= 5bp) 29511244 29513282 29613263 29615301 NC_060943.1 CM021586.2 97.16 True indel: indel (<= 5bp) 29513283 29514169 29615303 29616189 NC_060943.1 CM021586.2 97.38 True local misassembly 29511111 29528447 29616190 29633186 NC_060943.1 CM021586.2 97.06 True relocation, inconsistency = -11560 29516888 29519160 29633187 29635459 NC_060943.1 CM021586.2 97.95 True local misassembly 29519161 29523997 29635800 29640636 NC_060943.1 CM021586.2 99.48 True local misassembly 29524338 29529256 29640637 29645555 NC_060943.1 CM021586.2 97.82 True relocation, inconsistency = 7140 29536397 29536929 29645556 29646088 NC_060943.1 CM021586.2 97.86 True local misassembly 29539644 29542907 29646423 29649686 NC_060943.1 CM021586.2 96.57 True local misassembly 29542908 29543646 29650027 29650765 NC_060943.1 CM021586.2 95.67 True indel: indel (<= 5bp) 29544098 29545500 29651218 29652620 NC_060943.1 CM021586.2 96.55 True fake: not a misassembly (possible transposable element) 29478181 29480614 29652621 29655054 NC_060943.1 CM021586.2 96.55 True fake: not a misassembly (possible transposable element) 29549079 29550676 29656200 29657797 NC_060943.1 CM021586.2 98.75 True local misassembly 29554417 29555711 29657798 29659092 NC_060943.1 CM021586.2 98.74 True local misassembly 29556052 29558478 29659093 29661519 NC_060943.1 CM021586.2 99.34 True relocation, inconsistency = -74457 29484022 29485333 29661520 29662831 NC_060943.1 CM021586.2 96.06 True local misassembly 29494117 29495242 29665150 29666275 NC_060943.1 CM021586.2 95.91 True relocation, inconsistency = 29924 29528021 29532561 29669130 29673669 NC_060943.1 CM021586.2 96.12 True relocation, inconsistency = 23459 29558650 29562644 29676299 29680293 NC_060943.1 CM021586.2 99.72 True local misassembly 29562985 29564292 29680294 29681601 NC_060943.1 CM021586.2 99.77 True local misassembly 29564633 29566417 29681602 29683386 NC_060943.1 CM021586.2 97.65 True relocation, inconsistency = 18364 29587193 29588197 29685798 29686802 NC_060943.1 CM021586.2 97.61 True indel: indel (<= 5bp) 29588199 29591073 29686803 29689677 NC_060943.1 CM021586.2 95.79 True indel: indel (<= 5bp) 29591074 29592475 29689679 29691080 NC_060943.1 CM021586.2 96.15 True local misassembly 29592510 29595027 29691454 29693971 NC_060943.1 CM021586.2 96.7 True local misassembly 29595368 29596441 29693972 29695045 NC_060943.1 CM021586.2 96.37 True indel: indel (<= 5bp) 29596442 29599024 29695047 29697629 NC_060943.1 CM021586.2 99.3 True local misassembly 29599365 29600493 29697630 29698758 NC_060943.1 CM021586.2 96.69 True relocation, inconsistency = -31956 29568538 29570435 29698759 29700656 NC_060943.1 CM021586.2 96.42 True local misassembly 29570436 29575502 29700996 29706062 NC_060943.1 CM021586.2 96.39 True relocation, inconsistency = 26516 29602019 29603612 29706063 29707656 NC_060943.1 CM021586.2 97.23 True local misassembly 29603953 29606711 29707657 29710415 NC_060943.1 CM021586.2 99.6 True local misassembly 29606712 29611334 29710756 29715378 NC_060943.1 CM021586.2 99.07 True relocation, inconsistency = -9506 29602222 29605724 29715772 29719272 NC_060943.1 CM021586.2 98.34 True local misassembly 29605890 29612209 29719779 29726098 NC_060943.1 CM021586.2 98.73 True relocation, inconsistency = -10869 29601341 29603612 29726099 29728370 NC_060943.1 CM021586.2 96.37 True local misassembly 29603953 29606371 29728371 29730789 NC_060943.1 CM021586.2 99.42 True local misassembly 29606712 29607487 29730790 29731565 NC_060943.1 CM021586.2 99.74 True local misassembly 29607827 29609499 29731566 29733238 NC_060943.1 CM021586.2 99.57 True relocation, inconsistency = -7811 29601689 29611843 29733239 29743395 NC_060943.1 CM021586.2 97.91 True relocation, inconsistency = 20387 29632231 29638334 29743396 29749499 NC_060943.1 CM021586.2 99.57 True relocation, inconsistency = 52335 29690672 29691846 29749502 29750676 NC_060943.1 CM021586.2 97.7 True local misassembly 29691847 29693012 29751016 29752181 NC_060943.1 CM021586.2 98.11 True relocation, inconsistency = -69997 29623458 29624644 29752624 29753810 NC_060943.1 CM021586.2 99.66 True local misassembly 29624645 29627028 29754151 29756534 NC_060943.1 CM021586.2 99.45 True local misassembly 29627029 29631667 29757894 29762532 NC_060943.1 CM021586.2 99.12 True local misassembly 29633434 29635951 29764640 29767161 NC_060943.1 CM021586.2 97.86 True local misassembly 29636673 29637367 29767544 29768238 NC_060943.1 CM021586.2 98.71 True indel: indel (<= 5bp) 29637368 29638073 29768240 29768945 NC_060943.1 CM021586.2 97.73 True local misassembly 29638074 29638726 29769286 29769938 NC_060943.1 CM021586.2 98.01 True indel: indel (<= 5bp) 29638728 29639374 29769939 29770585 NC_060943.1 CM021586.2 96.6 True local misassembly 29641447 29642125 29772656 29773334 NC_060943.1 CM021586.2 97.64 True indel: indel (<= 5bp) 29642126 29643467 29773336 29774677 NC_060943.1 CM021586.2 98.58 True local misassembly 29643808 29644846 29774678 29775716 NC_060943.1 CM021586.2 98.08 True indel: indel (<= 5bp) 29644847 29645813 29775718 29776684 NC_060943.1 CM021586.2 98.14 True relocation, inconsistency = -14275 29633972 29634537 29779118 29779683 NC_060943.1 CM021586.2 97.7 True local misassembly 29637897 29645930 29783728 29791421 NC_060943.1 CM021586.2 95.22 True indel: stretch of mismatches 29646165 29647288 29791656 29792780 NC_060943.1 CM021586.2 98.4 True local misassembly 29645285 29645930 29792815 29793460 NC_060943.1 CM021586.2 98.14 True indel: stretch of mismatches 29646165 29647288 29793695 29794819 NC_060943.1 CM021586.2 98.49 True indel: stretch of mismatches 29647523 29662803 29795054 29811014 NC_060943.1 CM021586.2 95.14 True local misassembly 29666543 29668291 29811015 29812763 NC_060943.1 CM021586.2 98.7 True indel: indel (<= 5bp) 29668292 29669651 29812765 29814124 NC_060943.1 CM021586.2 97.57 True local misassembly 29671011 29672370 29815144 29816503 NC_060943.1 CM021586.2 98.09 True relocation, inconsistency = 12235 29685306 29685964 29817204 29817862 NC_060943.1 CM021586.2 97.12 True local misassembly 29686619 29687322 29818518 29819221 NC_060943.1 CM021586.2 96.45 True indel: stretch of mismatches 29687640 29688342 29819539 29820241 NC_060943.1 CM021586.2 98.01 True local misassembly 29689338 29693716 29820897 29825275 NC_060943.1 CM021586.2 99.61 True relocation, inconsistency = -15288 29678511 29679436 29825358 29826283 NC_060943.1 CM021586.2 98.92 True local misassembly 29679437 29680188 29826624 29827375 NC_060943.1 CM021586.2 97.34 True local misassembly 29686624 29687322 29833813 29834511 NC_060943.1 CM021586.2 97.0 True indel: indel (<= 5bp) 29687324 29687949 29834512 29835137 NC_060943.1 CM021586.2 98.24 True relocation, inconsistency = 26492 29714475 29717891 29835171 29838587 NC_060943.1 CM021586.2 98.1 True indel: indel (<= 5bp) 29717893 29719846 29838588 29840541 NC_060943.1 CM021586.2 99.59 True local misassembly 29719847 29723525 29840882 29844560 NC_060943.1 CM021586.2 99.73 True local misassembly 29724832 29725360 29844847 29845375 NC_060943.1 CM021586.2 99.24 True local misassembly 29726041 29727553 29845376 29846888 NC_060943.1 CM021586.2 98.74 True local misassembly 29727894 29734060 29846889 29853055 NC_060943.1 CM021586.2 97.28 True local misassembly 29735242 29737018 29853558 29855334 NC_060943.1 CM021586.2 97.52 True local misassembly 29737357 29738674 29855335 29856652 NC_060943.1 CM021586.2 99.17 True local misassembly 29741727 29744761 29856993 29860027 NC_060943.1 CM021586.2 99.42 True relocation, inconsistency = -10180 29734582 29740714 29860028 29866160 NC_060943.1 CM021586.2 98.3 True indel: indel (> 5bp) 29741104 29741820 29866558 29867274 NC_060943.1 CM021586.2 97.49 True local misassembly 29741821 29742404 29867609 29868192 NC_060943.1 CM021586.2 96.23 True indel: indel (<= 5bp) 29742407 29743071 29868193 29868857 NC_060943.1 CM021586.2 96.84 True indel: indel (<= 5bp) 29743424 29748054 29869213 29873843 NC_060943.1 CM021586.2 99.44 True local misassembly 29748735 29756586 29873844 29881694 NC_060943.1 CM021586.2 99.96 True local misassembly 29755574 29756586 29884406 29885418 NC_060943.1 CM021586.2 99.9 True relocation, inconsistency = -7437 29756449 29842424 29892718 29978690 NC_060943.1 CM021586.2 99.96 True local misassembly 29843114 30242596 29978691 30378081 NC_060943.1 CM021586.2 99.89 True relocation, inconsistency = 9257 30251854 32038992 30378082 32172313 NC_060943.1 CM021586.2 99.33 True local misassembly 32039732 35248757 32175264 35385386 NC_060943.1 CM021586.2 99.74 True local misassembly 35248184 36278127 35385387 36414944 NC_060943.1 CM021586.2 99.78 True indel: indel (> 5bp) 36278211 37905645 36415062 38042444 NC_060943.1 CM021586.2 99.74 True relocation, inconsistency = 12475 37918121 37920120 38042445 38044467 NC_060943.1 CM021586.2 99.0 True indel: indel (<= 5bp) 37920189 40019443 38044535 40143810 NC_060943.1 CM021586.2 99.7 True relocation, inconsistency = 85791 40105235 40553010 40143811 40591325 NC_060943.1 CM021586.2 99.6 True local misassembly 40553233 40591133 40591442 40629326 NC_060943.1 CM021586.2 99.8 True local misassembly 40590020 40682534 40629327 40721821 NC_060943.1 CM021586.2 99.8 True local misassembly 40682935 41951027 40722019 41990033 NC_060943.1 CM021586.2 99.8 True indel: indel (> 5bp) 41951053 42715322 41990102 42754722 NC_060943.1 CM021586.2 99.76 True local misassembly 42715895 46021170 42755292 46060417 NC_060943.1 CM021586.2 99.76 True relocation, inconsistency = 63755 46084926 46149393 46060418 46124899 NC_060943.1 CM021586.2 99.55 True local misassembly 46143954 49141698 46124900 49117671 NC_060943.1 CM021586.2 99.66 True local misassembly 49143110 50245952 49117672 50220094 NC_060943.1 CM021586.2 99.75 True local misassembly 50247521 50739696 50220624 50712583 NC_060943.1 CM021586.2 99.67 True indel: indel (> 5bp) 50739755 50750385 50712633 50723272 NC_060943.1 CM021586.2 97.69 True relocation, inconsistency = 80508 50830997 50852399 50723376 50744791 NC_060943.1 CM021586.2 98.51 True relocation, inconsistency = -80576 50771824 50777286 50744792 50750241 NC_060943.1 CM021586.2 98.64 True relocation, inconsistency = 80564 50857851 50889887 50750242 50782271 NC_060943.1 CM021586.2 99.54 True indel: indel (<= 5bp) 50889985 52161577 50782373 52052959 NC_060943.1 CM021586.2 99.51 True indel: indel (> 5bp) 52161892 53091436 52053294 52979825 NC_060943.1 CM021586.2 99.3 True relocation, inconsistency = 60690 53152127 53199571 52979826 53027325 NC_060943.1 CM021586.2 99.18 True indel: indel (<= 5bp) 53199634 53204965 53027390 53032679 NC_060943.1 CM021586.2 95.8 True indel: indel (<= 5bp) 53205028 53210358 53032744 53038040 NC_060943.1 CM021586.2 96.15 True indel: indel (<= 5bp) 53210421 54134979 53038105 53961877 NC_060943.1 CM021586.2 99.53 True indel: indel (> 5bp) 54135077 55771822 53961946 55599940 NC_060943.1 CM021586.2 99.66 True indel: indel (<= 5bp) 55771978 55972564 55600095 55800678 NC_060943.1 CM021586.2 99.34 True local misassembly 55973146 56096413 55800955 55924000 NC_060943.1 CM021586.2 99.41 True relocation, inconsistency = 35176 56131590 56959984 55924001 56752718 NC_060943.1 CM021586.2 99.73 True local misassembly 56960193 57000777 56752719 56793969 NC_060943.1 CM021586.2 98.15 True local misassembly 57001740 57212461 56795714 57006528 NC_060943.1 CM021586.2 99.25 True local misassembly 57213004 57249056 57006684 57042114 NC_060943.1 CM021586.2 97.99 True indel: indel (> 5bp) 57249262 57325092 57042343 57118050 NC_060943.1 CM021586.2 99.22 True local misassembly 57327118 57497383 57118051 57285900 NC_060943.1 CM021586.2 98.2 True indel: indel (<= 5bp) 57497547 57500101 57286059 57288618 NC_060943.1 CM021586.2 99.77 True local misassembly 57501849 57846062 57292166 57636444 NC_060943.1 CM021586.2 99.72 True local misassembly 57848423 57856998 57639020 57647535 NC_060943.1 CM021586.2 95.18 True local misassembly 57858741 57875216 57647552 57664022 NC_060943.1 CM021586.2 98.0 True indel: stretch of mismatches 57875312 57924333 57664118 57713869 NC_060943.1 CM021586.2 97.68 True relocation, inconsistency = -47872 57880695 57924333 57718103 57762115 NC_060943.1 CM021586.2 98.26 True relocation, inconsistency = -28370 57919591 57921345 57785743 57787497 NC_060943.1 CM021586.2 96.13 True local misassembly 57921945 57923089 57788078 57789222 NC_060943.1 CM021586.2 95.2 True local misassembly 57935311 58127059 57800064 57992122 NC_060943.1 CM021586.2 99.26 True indel: indel (> 5bp) 58127566 58659685 57992623 58525894 NC_060943.1 CM021586.2 99.0 True indel: indel (> 5bp) 58659764 58810042 58525949 58676313 NC_060943.1 CM021586.2 99.77 True local misassembly 58811524 60613731 58677709 60482925 NC_060943.1 CM021586.2 99.16 True local misassembly 60614425 60615003 60483607 60484185 NC_060943.1 CM021586.2 99.48 True indel: stretch of mismatches 60615122 61707364 60484304 61576862 NC_060943.1 CM021586.2 99.5 True CONTIG CM021586.2 61576862 misassembled 277 436431 269 436154 NC_060944.1 CM021587.2 99.77 True indel: indel (> 5bp) 436573 686171 436213 685711 NC_060944.1 CM021587.2 99.73 True local misassembly 686122 863661 685788 863100 NC_060944.1 CM021587.2 99.47 True local misassembly 865498 1625677 863411 1625599 NC_060944.1 CM021587.2 99.56 True indel: stretch of mismatches 1625963 1626884 1625885 1626805 NC_060944.1 CM021587.2 95.01 True local misassembly 1627760 1893520 1627674 1893199 NC_060944.1 CM021587.2 99.72 True relocation, inconsistency = 7896 1904753 2873493 1896536 2857271 NC_060944.1 CM021587.2 98.98 True local misassembly 2873737 4120969 2857653 4103678 NC_060944.1 CM021587.2 99.64 True indel: indel (> 5bp) 4121199 4589565 4103898 4572433 NC_060944.1 CM021587.2 99.62 True indel: indel (<= 5bp) 4589687 6085260 4572553 6070882 NC_060944.1 CM021587.2 99.35 True local misassembly 6087178 8704184 6070883 8686221 NC_060944.1 CM021587.2 99.77 True indel: indel (> 5bp) 8704189 10850795 8686260 10833132 NC_060944.1 CM021587.2 99.74 True fake: not a misassembly (possible transposable element) 10850796 10851413 10833750 10833133 NC_060944.1 CM021587.2 100.0 True fake: not a misassembly (possible transposable element) 10851414 12601841 10833751 12584185 NC_060944.1 CM021587.2 99.77 True local misassembly 12602267 13109545 12584482 13091730 NC_060944.1 CM021587.2 99.78 True local misassembly 13109293 15781258 13092626 15764119 NC_060944.1 CM021587.2 99.77 True local misassembly 15781551 20323412 15765235 20300078 NC_060944.1 CM021587.2 99.62 True indel: indel (> 5bp) 20323532 20350299 20300230 20326998 NC_060944.1 CM021587.2 99.75 True local misassembly 20350711 20415061 20327309 20390092 NC_060944.1 CM021587.2 96.47 True local misassembly 20415213 22435945 20390383 22411960 NC_060944.1 CM021587.2 99.74 True indel: indel (> 5bp) 22436175 23488344 22412150 23464306 NC_060944.1 CM021587.2 99.86 True local misassembly 23489197 26394643 23465159 26369621 NC_060944.1 CM021587.2 99.71 True local misassembly 26399744 26405787 26369622 26375323 NC_060944.1 CM021587.2 96.58 True relocation, inconsistency = 28556 26434344 26435703 26375324 26376683 NC_060944.1 CM021587.2 97.08 True local misassembly 26436286 26438957 26376928 26379599 NC_060944.1 CM021587.2 96.52 True local misassembly 26438958 26442161 26379942 26383145 NC_060944.1 CM021587.2 96.82 True local misassembly 26442714 26555153 26383698 26496144 NC_060944.1 CM021587.2 97.2 True relocation, inconsistency = 18703 26574368 26576407 26496656 26498696 NC_060944.1 CM021587.2 96.82 True local misassembly 26578725 26587328 26501353 26510979 NC_060944.1 CM021587.2 96.76 True relocation, inconsistency = -19028 26568301 26659444 26510980 26603488 NC_060944.1 CM021587.2 96.47 True local misassembly 26657584 26679626 26603667 26625874 NC_060944.1 CM021587.2 98.47 True relocation, inconsistency = -13228 26666417 26667056 26625893 26626532 NC_060944.1 CM021587.2 97.81 True local misassembly 26667626 26668490 26627109 26627973 NC_060944.1 CM021587.2 97.34 True local misassembly 26668814 26669452 26628461 26629099 NC_060944.1 CM021587.2 97.34 True local misassembly 26671010 26697411 26630486 26656896 NC_060944.1 CM021587.2 98.79 True relocation, inconsistency = 9516 26706928 26737923 26656897 26688235 NC_060944.1 CM021587.2 96.88 True relocation, inconsistency = 69687 26808228 26919701 26688853 26800332 NC_060944.1 CM021587.2 98.63 True local misassembly 26925140 26942052 26800333 26817242 NC_060944.1 CM021587.2 98.75 True local misassembly 26946133 26958638 26821319 26833828 NC_060944.1 CM021587.2 99.5 True local misassembly 26959256 27008852 26834441 26884038 NC_060944.1 CM021587.2 99.67 True indel: indel (<= 5bp) 27009278 27010534 26884468 26885724 NC_060944.1 CM021587.2 99.12 True fake: not a misassembly (possible transposable element) 27001764 27004885 26886666 26889787 NC_060944.1 CM021587.2 98.25 True fake: not a misassembly (possible transposable element) 27014592 27039712 26889788 26914902 NC_060944.1 CM021587.2 99.32 True relocation, inconsistency = -13595 27027432 27062361 26916217 26951144 NC_060944.1 CM021587.2 99.32 True relocation, inconsistency = 49617 27111979 27149853 26951145 26989021 NC_060944.1 CM021587.2 99.55 True fake: not a misassembly (possible transposable element) 27234800 27236264 26989022 26990486 NC_060944.1 CM021587.2 98.19 True fake: not a misassembly (possible transposable element) 27152339 27190242 26990487 27028052 NC_060944.1 CM021587.2 98.38 True relocation, inconsistency = 16647 27206890 27211020 27028053 27032182 NC_060944.1 CM021587.2 96.91 True relocation, inconsistency = 11556 27222635 27223277 27032241 27032883 NC_060944.1 CM021587.2 97.98 True indel: indel (<= 5bp) 27223279 27228066 27032884 27037671 NC_060944.1 CM021587.2 99.59 True local misassembly 27230442 27238225 27037672 27045455 NC_060944.1 CM021587.2 99.28 True indel: indel (<= 5bp) 27238693 27241625 27045921 27048853 NC_060944.1 CM021587.2 97.89 True indel: indel (<= 5bp) 27241659 27245563 27048885 27052789 NC_060944.1 CM021587.2 98.75 True local misassembly 27245564 27248087 27053132 27055655 NC_060944.1 CM021587.2 98.14 True local misassembly 27248088 27250605 27055998 27058515 NC_060944.1 CM021587.2 97.95 True local misassembly 27249585 27272789 27058516 27081043 NC_060944.1 CM021587.2 96.21 True local misassembly 27271428 27286528 27081044 27096145 NC_060944.1 CM021587.2 99.15 True relocation, inconsistency = -183132 27103397 27137845 27096146 27130611 NC_060944.1 CM021587.2 98.53 True relocation, inconsistency = 1806926 28944948 28947070 27130788 27132910 NC_060944.1 CM021587.2 99.12 True local misassembly 28941633 28955598 27132911 27146875 NC_060944.1 CM021587.2 99.38 True relocation, inconsistency = -1615625 27340511 27349761 27147413 27156663 NC_060944.1 CM021587.2 99.78 True local misassembly 27352481 27372343 27156664 27176526 NC_060944.1 CM021587.2 99.7 True local misassembly 27369624 27376089 27176527 27182993 NC_060944.1 CM021587.2 99.49 True local misassembly 27381531 27389317 27182994 27190779 NC_060944.1 CM021587.2 99.64 True relocation, inconsistency = -7817 27381501 27391786 27190780 27201063 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = -62205 27329582 27331336 27201064 27202818 NC_060944.1 CM021587.2 99.03 True relocation, inconsistency = -179753 27155037 27162739 27206272 27213978 NC_060944.1 CM021587.2 98.68 True relocation, inconsistency = 199473 27362213 27385706 27213979 27237472 NC_060944.1 CM021587.2 99.7 True relocation, inconsistency = -19038 27366669 27375370 27237473 27246174 NC_060944.1 CM021587.2 99.41 True relocation, inconsistency = 8160 27383628 27392732 27246272 27255033 NC_060944.1 CM021587.2 96.99 True local misassembly 27390013 27405688 27255034 27270709 NC_060944.1 CM021587.2 99.65 True local misassembly 27411128 27412662 27270710 27272244 NC_060944.1 CM021587.2 99.81 True local misassembly 27418782 27421553 27272245 27275017 NC_060944.1 CM021587.2 99.61 True local misassembly 27416116 27435390 27275018 27294292 NC_060944.1 CM021587.2 99.71 True relocation, inconsistency = 35356 27470747 27485581 27294293 27309126 NC_060944.1 CM021587.2 99.65 True local misassembly 27482520 27493621 27309127 27320228 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = 16998 27510687 27525452 27320296 27335062 NC_060944.1 CM021587.2 99.77 True indel: stretch of mismatches 27525453 27550299 27335063 27359910 NC_060944.1 CM021587.2 99.85 True local misassembly 27544861 27552849 27359911 27367898 NC_060944.1 CM021587.2 99.62 True local misassembly 27550131 27558515 27367899 27376283 NC_060944.1 CM021587.2 99.8 True local misassembly 27561235 27580468 27376284 27395517 NC_060944.1 CM021587.2 99.83 True relocation, inconsistency = -47584 27532885 27534175 27395518 27396808 NC_060944.1 CM021587.2 96.92 True relocation, inconsistency = 44865 27579041 27606195 27396809 27423963 NC_060944.1 CM021587.2 99.83 True relocation, inconsistency = 51318 27657514 27660167 27423964 27426617 NC_060944.1 CM021587.2 99.61 True relocation, inconsistency = -50635 27609533 27624027 27426618 27441113 NC_060944.1 CM021587.2 99.7 True relocation, inconsistency = 37041 27661069 27668745 27441114 27448789 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = -21746 27647000 27659767 27448790 27461557 NC_060944.1 CM021587.2 99.73 True fake: not a misassembly (possible transposable element) 27642098 27644737 27461558 27464197 NC_060944.1 CM021587.2 99.71 True fake: not a misassembly (possible transposable element) 27660172 27661950 27464680 27466458 NC_060944.1 CM021587.2 99.73 True relocation, inconsistency = 84630 27746581 27769240 27466459 27489118 NC_060944.1 CM021587.2 99.77 True relocation, inconsistency = -110457 27658784 27660171 27489119 27490506 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = 99581 27759753 27775227 27490507 27505983 NC_060944.1 CM021587.2 99.72 True relocation, inconsistency = -16987 27758241 27759748 27505984 27507491 NC_060944.1 CM021587.2 99.64 True local misassembly 27762468 27775227 27507492 27520253 NC_060944.1 CM021587.2 99.73 True relocation, inconsistency = -136957 27638318 27650665 27520301 27532648 NC_060944.1 CM021587.2 99.66 True relocation, inconsistency = 61514 27712180 27728356 27532649 27549167 NC_060944.1 CM021587.2 97.91 True relocation, inconsistency = -32286 27696071 27726399 27549168 27579496 NC_060944.1 CM021587.2 99.81 True relocation, inconsistency = 24131 27750531 27759269 27579497 27588235 NC_060944.1 CM021587.2 99.89 True relocation, inconsistency = 70002 27829751 27834252 27588715 27593216 NC_060944.1 CM021587.2 99.64 True relocation, inconsistency = -87672 27746581 27773315 27593217 27619951 NC_060944.1 CM021587.2 99.82 True relocation, inconsistency = -229746 27543570 27548979 27619952 27625360 NC_060944.1 CM021587.2 99.59 True relocation, inconsistency = 304847 27853827 27866575 27625361 27638109 NC_060944.1 CM021587.2 99.76 True local misassembly 27869622 27877984 27638437 27646799 NC_060944.1 CM021587.2 99.95 True local misassembly 27883728 27895956 27647448 27659676 NC_060944.1 CM021587.2 99.9 True relocation, inconsistency = -72048 27823909 27831103 27659677 27666871 NC_060944.1 CM021587.2 99.86 True relocation, inconsistency = -242993 27588111 27592498 27666872 27671259 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = 430251 28027835 28040989 27676345 27689499 NC_060944.1 CM021587.2 99.86 True relocation, inconsistency = 21752 28062742 28064774 27689500 27691532 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = 445590 28541857 28548236 27723025 27729406 NC_060944.1 CM021587.2 99.84 True relocation, inconsistency = -714414 27833823 27837361 27729407 27732945 NC_060944.1 CM021587.2 99.64 True relocation, inconsistency = 1017765 28857095 28862463 27734914 27740282 NC_060944.1 CM021587.2 99.87 True relocation, inconsistency = -877746 27985345 28004752 27740910 27760317 NC_060944.1 CM021587.2 99.95 True relocation, inconsistency = -906395 27105316 27108395 27767276 27770356 NC_060944.1 CM021587.2 98.73 True relocation, inconsistency = 1601626 28723717 28728502 27784052 27788837 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -692511 28035992 28052524 27788838 27805372 NC_060944.1 CM021587.2 99.87 True indel: stretch of mismatches 28052525 28055674 27805373 27808522 NC_060944.1 CM021587.2 99.77 True local misassembly 28050237 28056360 27808523 27814646 NC_060944.1 CM021587.2 99.77 True local misassembly 28050923 28054947 27814647 27818671 NC_060944.1 CM021587.2 99.8 True relocation, inconsistency = -88022 27966926 27975378 27818672 27827124 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = 74427 28050237 28054947 27827556 27832266 NC_060944.1 CM021587.2 99.85 True local misassembly 28052229 28057501 27832267 27837533 NC_060944.1 CM021587.2 97.38 True relocation, inconsistency = 665488 28722990 28729153 27837534 27843698 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -681636 28047518 28059339 27843699 27855349 NC_060944.1 CM021587.2 98.36 True relocation, inconsistency = -32626 28026714 28030553 27855350 27859189 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = 29907 28060461 28070020 27859190 27868749 NC_060944.1 CM021587.2 99.77 True local misassembly 28072740 28076311 27868750 27872321 NC_060944.1 CM021587.2 99.67 True relocation, inconsistency = -60158 28016336 28019677 27872504 27875845 NC_060944.1 CM021587.2 99.83 True relocation, inconsistency = 35345 28055023 28072567 27875846 27893390 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = -635903 27436665 27437764 27893391 27894490 NC_060944.1 CM021587.2 99.6 True relocation, inconsistency = 198857 27637060 27643850 27894929 27901719 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -102982 27541299 27547151 27902150 27908001 NC_060944.1 CM021587.2 99.49 True relocation, inconsistency = 626025 28178403 28186121 27913228 27920946 NC_060944.1 CM021587.2 99.88 True local misassembly 28181585 28188890 27922190 27929495 NC_060944.1 CM021587.2 99.74 True local misassembly 28186172 28187022 27929496 27930346 NC_060944.1 CM021587.2 99.75 True local misassembly 28181585 28188890 27930347 27937652 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = -85657 28103234 28108035 27937653 27942454 NC_060944.1 CM021587.2 99.84 True local misassembly 28110755 28119839 27942455 27951539 NC_060944.1 CM021587.2 99.83 True local misassembly 28114060 28118180 27951540 27955660 NC_060944.1 CM021587.2 99.8 True relocation, inconsistency = 258648 28376829 28383290 27955661 27962122 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = -348032 28038020 28043708 27964884 27970572 NC_060944.1 CM021587.2 99.81 True relocation, inconsistency = 62194 28111779 28117277 27976449 27981947 NC_060944.1 CM021587.2 99.81 True relocation, inconsistency = -14279 28102999 28108671 27981948 27987620 NC_060944.1 CM021587.2 99.82 True relocation, inconsistency = 47249 28172492 28178081 28004192 28009781 NC_060944.1 CM021587.2 99.91 True relocation, inconsistency = -27532 28150550 28164567 28009782 28023799 NC_060944.1 CM021587.2 99.67 True relocation, inconsistency = -69000 28095568 28102562 28023800 28030795 NC_060944.1 CM021587.2 99.71 True local misassembly 28108001 28117558 28030796 28040353 NC_060944.1 CM021587.2 99.87 True local misassembly 28120620 28132871 28040354 28052605 NC_060944.1 CM021587.2 99.82 True relocation, inconsistency = -73754 28059600 28063179 28053088 28056667 NC_060944.1 CM021587.2 99.61 True local misassembly 28057742 28067496 28056668 28066422 NC_060944.1 CM021587.2 99.69 True relocation, inconsistency = -233479 27834018 27836541 28066423 28068946 NC_060944.1 CM021587.2 99.61 True relocation, inconsistency = -241635 27603082 27606195 28077122 28080235 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = 142742 27751592 27761101 28082890 28092399 NC_060944.1 CM021587.2 99.84 True indel: stretch of mismatches 27761102 27766539 28092400 28097837 NC_060944.1 CM021587.2 99.72 True relocation, inconsistency = 257260 28029865 28040989 28103903 28115027 NC_060944.1 CM021587.2 99.87 True relocation, inconsistency = 21752 28062742 28064774 28115028 28117060 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = -43502 28035992 28052524 28131780 28148314 NC_060944.1 CM021587.2 99.85 True relocation, inconsistency = -13595 28038930 28051865 28148315 28161250 NC_060944.1 CM021587.2 99.86 True relocation, inconsistency = 156692 28216811 28221922 28169504 28174615 NC_060944.1 CM021587.2 99.84 True relocation, inconsistency = 8157 28230080 28237819 28174616 28182355 NC_060944.1 CM021587.2 99.7 True indel: stretch of mismatches 28237820 28240222 28182356 28184758 NC_060944.1 CM021587.2 99.85 True relocation, inconsistency = 67634 28307857 28318475 28184759 28195377 NC_060944.1 CM021587.2 99.99 True relocation, inconsistency = -1198356 27120120 27127446 28195378 28202705 NC_060944.1 CM021587.2 98.74 True relocation, inconsistency = 1217389 28361895 28367991 28219765 28225861 NC_060944.1 CM021587.2 99.89 True relocation, inconsistency = -64914 28303709 28307903 28226493 28230687 NC_060944.1 CM021587.2 99.83 True indel: stretch of mismatches 28307904 28315688 28230688 28238472 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -449651 27866038 27868824 28238473 28241259 NC_060944.1 CM021587.2 99.72 True relocation, inconsistency = -223276 27657397 27662510 28253108 28258221 NC_060944.1 CM021587.2 99.73 True relocation, inconsistency = 718808 28381319 28387704 28258222 28264607 NC_060944.1 CM021587.2 99.77 True relocation, inconsistency = -10876 28376829 28383304 28264608 28271083 NC_060944.1 CM021587.2 99.81 True indel: stretch of mismatches 28383305 28393923 28271084 28281702 NC_060944.1 CM021587.2 99.77 True indel: stretch of mismatches 28393924 28395861 28281703 28283640 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -8157 28387705 28396642 28283641 28292578 NC_060944.1 CM021587.2 99.82 True relocation, inconsistency = 19033 28415676 28419418 28292579 28296321 NC_060944.1 CM021587.2 99.81 True relocation, inconsistency = 21410 28440829 28450555 28296322 28306048 NC_060944.1 CM021587.2 99.94 True relocation, inconsistency = -13936 28437001 28448205 28306430 28317633 NC_060944.1 CM021587.2 99.82 True relocation, inconsistency = -576753 27879795 27891225 28325976 28337404 NC_060944.1 CM021587.2 99.69 True relocation, inconsistency = 520681 28413387 28422440 28338885 28347938 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = -682778 27739663 27742356 28347939 28350630 NC_060944.1 CM021587.2 99.73 True relocation, inconsistency = 642677 28385034 28389667 28350631 28355264 NC_060944.1 CM021587.2 99.74 True relocation, inconsistency = -1379168 27012063 27016402 28356828 28361164 NC_060944.1 CM021587.2 98.81 True relocation, inconsistency = 715420 27731823 27744004 28361165 28373346 NC_060944.1 CM021587.2 99.7 True relocation, inconsistency = 634178 28378600 28393923 28373764 28389087 NC_060944.1 CM021587.2 99.78 True indel: stretch of mismatches 28393924 28402015 28389088 28397179 NC_060944.1 CM021587.2 99.87 True relocation, inconsistency = -743279 27659232 27666941 28397675 28405383 NC_060944.1 CM021587.2 99.73 True relocation, inconsistency = 217501 27884443 27886124 28405384 28407065 NC_060944.1 CM021587.2 99.67 True relocation, inconsistency = 552625 28438750 28443845 28407066 28412161 NC_060944.1 CM021587.2 99.82 True local misassembly 28438750 28444599 28412162 28418011 NC_060944.1 CM021587.2 99.83 True local misassembly 28439504 28450555 28418012 28429063 NC_060944.1 CM021587.2 99.88 True local misassembly 28448834 28453968 28430744 28435879 NC_060944.1 CM021587.2 99.86 True relocation, inconsistency = 381193 28843178 28851246 28443896 28451964 NC_060944.1 CM021587.2 99.75 True relocation, inconsistency = -1017424 27833823 27839242 28451965 28457384 NC_060944.1 CM021587.2 99.69 True relocation, inconsistency = -10876 27831534 27839242 28460552 28468089 NC_060944.1 CM021587.2 97.47 True relocation, inconsistency = 727838 28567081 28573414 28468090 28474421 NC_060944.1 CM021587.2 99.84 True relocation, inconsistency = -38577 28535618 28542798 28475202 28482384 NC_060944.1 CM021587.2 99.64 True relocation, inconsistency = -647804 27894995 27896189 28482385 28483579 NC_060944.1 CM021587.2 99.63 True relocation, inconsistency = 560777 28458744 28462999 28485357 28489610 NC_060944.1 CM021587.2 99.84 True relocation, inconsistency = 125601 28588601 28603813 28489611 28504823 NC_060944.1 CM021587.2 99.94 True relocation, inconsistency = -8157 28595657 28601094 28504824 28510261 NC_060944.1 CM021587.2 99.92 True relocation, inconsistency = -767272 27833823 27836947 28510262 28513386 NC_060944.1 CM021587.2 99.41 True relocation, inconsistency = 747221 28590912 28603813 28520130 28533031 NC_060944.1 CM021587.2 99.93 True relocation, inconsistency = -13595 28590912 28602025 28533725 28544838 NC_060944.1 CM021587.2 99.88 True relocation, inconsistency = 50302 28653207 28658955 28545718 28551466 NC_060944.1 CM021587.2 99.92 True relocation, inconsistency = -477371 28181585 28188890 28551467 28558772 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = 468872 28682624 28685765 28583634 28586775 NC_060944.1 CM021587.2 99.81 True relocation, inconsistency = -954874 27730892 27741640 28586776 28597522 NC_060944.1 CM021587.2 99.55 True relocation, inconsistency = -491484 27250264 27255742 28597630 28603108 NC_060944.1 CM021587.2 98.52 True relocation, inconsistency = -263564 26992179 26996782 28603109 28607714 NC_060944.1 CM021587.2 98.06 True relocation, inconsistency = 1047317 28055023 28056480 28618638 28620095 NC_060944.1 CM021587.2 99.76 True relocation, inconsistency = 662604 28719085 28746218 28620096 28647229 NC_060944.1 CM021587.2 99.96 True local misassembly 28751657 28753000 28647230 28648573 NC_060944.1 CM021587.2 99.78 True relocation, inconsistency = -615697 28181585 28188890 28692855 28700160 NC_060944.1 CM021587.2 99.84 True relocation, inconsistency = 610257 28801350 28817592 28702363 28718605 NC_060944.1 CM021587.2 99.88 True local misassembly 28841802 28855909 28742815 28756922 NC_060944.1 CM021587.2 99.92 True relocation, inconsistency = -205966 28649944 28650695 28756923 28757674 NC_060944.1 CM021587.2 100.0 True indel: indel (<= 5bp) 28650698 28652272 28757675 28759249 NC_060944.1 CM021587.2 99.39 True relocation, inconsistency = 219566 28871839 28883091 28759250 28770502 NC_060944.1 CM021587.2 99.85 True local misassembly 28885811 28899406 28770503 28784097 NC_060944.1 CM021587.2 99.56 True relocation, inconsistency = -13596 28885811 28895814 28784098 28794086 NC_060944.1 CM021587.2 99.47 True local misassembly 28893095 28911707 28794087 28812698 NC_060944.1 CM021587.2 99.72 True local misassembly 28906269 28907004 28812699 28813434 NC_060944.1 CM021587.2 99.48 True relocation, inconsistency = 10535 28917540 28925946 28813435 28821843 NC_060944.1 CM021587.2 99.1 True relocation, inconsistency = 13595 28939542 28945687 28821844 28827989 NC_060944.1 CM021587.2 99.17 True local misassembly 28940250 28959587 28827990 28847324 NC_060944.1 CM021587.2 99.33 True indel: stretch of mismatches 28959588 28971578 28847325 28859313 NC_060944.1 CM021587.2 99.61 True relocation, inconsistency = 69880 29041459 29062773 28859314 28880628 NC_060944.1 CM021587.2 99.59 True fake: not a misassembly (possible transposable element) 29044271 29047300 28880629 28883643 NC_060944.1 CM021587.2 98.74 True fake: not a misassembly (possible transposable element) 29060366 29073561 28883644 28897182 NC_060944.1 CM021587.2 97.17 True local misassembly 29070844 29072846 28897183 28899186 NC_060944.1 CM021587.2 98.98 True local misassembly 29078965 29091190 28899187 28911412 NC_060944.1 CM021587.2 99.41 True relocation, inconsistency = -11558 29079633 29091190 28911413 28922970 NC_060944.1 CM021587.2 99.41 True local misassembly 29094593 29100083 28922971 28928461 NC_060944.1 CM021587.2 99.68 True relocation, inconsistency = 50161 29150254 29157316 28928471 28935532 NC_060944.1 CM021587.2 97.23 True relocation, inconsistency = -53739 29103578 29160341 28935533 28992298 NC_060944.1 CM021587.2 98.88 True relocation, inconsistency = 19621 29179964 29180881 28992300 28993217 NC_060944.1 CM021587.2 96.51 True indel: indel (<= 5bp) 29180882 29181818 28993219 28994155 NC_060944.1 CM021587.2 96.33 True local misassembly 29182503 29189835 28994156 29001489 NC_060944.1 CM021587.2 99.1 True local misassembly 29187729 29198842 29001945 29013059 NC_060944.1 CM021587.2 99.48 True local misassembly 29197486 29211692 29013067 29027273 NC_060944.1 CM021587.2 99.34 True relocation, inconsistency = 202081 29413774 29471244 29027274 29085404 NC_060944.1 CM021587.2 95.48 True relocation, inconsistency = -206025 29265350 29287867 29085535 29108054 NC_060944.1 CM021587.2 99.31 True local misassembly 29289277 29397479 29108270 29216810 NC_060944.1 CM021587.2 96.25 True relocation, inconsistency = 13486 29411188 29444986 29217033 29250142 NC_060944.1 CM021587.2 96.87 True relocation, inconsistency = -35677 29409310 29488809 29250143 29328619 NC_060944.1 CM021587.2 98.07 True relocation, inconsistency = -11605 29477205 29904538 29328620 29755040 NC_060944.1 CM021587.2 99.59 True local misassembly 29909921 30133092 29760377 29983512 NC_060944.1 CM021587.2 99.92 True local misassembly 30133103 30645681 29989641 30499096 NC_060944.1 CM021587.2 99.01 True local misassembly 30650996 30660706 30499462 30509172 NC_060944.1 CM021587.2 99.71 True indel: indel (<= 5bp) 30660710 30662525 30509173 30510988 NC_060944.1 CM021587.2 99.17 True local misassembly 30662698 30663592 30510989 30511883 NC_060944.1 CM021587.2 99.66 True indel: indel (<= 5bp) 30663594 30664721 30511884 30513011 NC_060944.1 CM021587.2 99.02 True indel: indel (<= 5bp) 30664722 30666395 30513013 30514686 NC_060944.1 CM021587.2 97.91 True local misassembly 30666396 30667161 30515199 30515964 NC_060944.1 CM021587.2 97.91 True local misassembly 30667674 30668550 30515965 30516841 NC_060944.1 CM021587.2 97.38 True local misassembly 30668906 30669732 30517025 30517851 NC_060944.1 CM021587.2 99.03 True local misassembly 30669733 30671282 30518706 30520255 NC_060944.1 CM021587.2 98.06 True fake: not a misassembly (possible transposable element) 30719089 30721566 30520749 30523227 NC_060944.1 CM021587.2 97.82 True fake: not a misassembly (possible transposable element) 30674022 30675381 30523340 30524699 NC_060944.1 CM021587.2 97.94 True indel: indel (<= 5bp) 30675821 30676673 30525141 30525993 NC_060944.1 CM021587.2 97.66 True indel: indel (<= 5bp) 30676674 30678553 30525995 30527874 NC_060944.1 CM021587.2 97.77 True local misassembly 30679235 30680415 30528217 30529397 NC_060944.1 CM021587.2 98.22 True indel: indel (<= 5bp) 30680416 30681112 30529399 30530095 NC_060944.1 CM021587.2 97.56 True indel: indel (<= 5bp) 30681113 30681965 30530097 30530949 NC_060944.1 CM021587.2 98.48 True indel: indel (<= 5bp) 30681966 30682818 30530951 30531803 NC_060944.1 CM021587.2 98.94 True local misassembly 30682819 30683716 30532148 30533045 NC_060944.1 CM021587.2 97.66 True local misassembly 30684079 30685417 30533751 30535089 NC_060944.1 CM021587.2 98.43 True local misassembly 30685418 30685961 30535434 30535977 NC_060944.1 CM021587.2 98.35 True indel: indel (<= 5bp) 30685963 30686477 30535978 30536492 NC_060944.1 CM021587.2 98.06 True indel: indel (<= 5bp) 30686479 30687334 30536493 30537348 NC_060944.1 CM021587.2 97.9 True indel: indel (<= 5bp) 30687336 30688032 30537349 30538045 NC_060944.1 CM021587.2 98.28 True local misassembly 30688699 30690552 30538542 30540395 NC_060944.1 CM021587.2 98.22 True indel: indel (<= 5bp) 30690554 30691321 30540396 30541163 NC_060944.1 CM021587.2 97.27 True local misassembly 30691493 30692530 30541164 30542201 NC_060944.1 CM021587.2 98.27 True indel: indel (<= 5bp) 30692532 30693075 30542202 30542745 NC_060944.1 CM021587.2 98.53 True local misassembly 30693632 30694355 30543131 30543854 NC_060944.1 CM021587.2 97.24 True local misassembly 30694490 30696694 30544329 30546533 NC_060944.1 CM021587.2 97.88 True fake: not a misassembly (possible transposable element) 30747114 30751648 30546534 30551071 NC_060944.1 CM021587.2 97.53 True fake: not a misassembly (possible transposable element) 30701914 30708661 30551760 30558681 NC_060944.1 CM021587.2 95.81 True fake: not a misassembly (possible transposable element) 30759419 30760565 30558682 30559828 NC_060944.1 CM021587.2 97.47 True fake: not a misassembly (possible transposable element) 30711048 30712882 30561067 30562901 NC_060944.1 CM021587.2 98.42 True relocation, inconsistency = 50245 30763629 30764666 30563403 30564440 NC_060944.1 CM021587.2 97.98 True indel: indel (<= 5bp) 30764667 30771501 30564442 30571276 NC_060944.1 CM021587.2 97.4 True indel: indel (<= 5bp) 30771502 30777042 30571278 30576818 NC_060944.1 CM021587.2 97.73 True indel: indel (<= 5bp) 30777043 30778409 30576820 30578186 NC_060944.1 CM021587.2 98.1 True indel: indel (<= 5bp) 30778410 30779776 30578188 30579554 NC_060944.1 CM021587.2 98.24 True indel: indel (<= 5bp) 30779777 30780430 30579556 30580209 NC_060944.1 CM021587.2 97.09 True local misassembly 30782511 30783192 30582970 30583651 NC_060944.1 CM021587.2 98.39 True fake: not a misassembly (possible transposable element) 30735279 30736548 30584104 30585372 NC_060944.1 CM021587.2 98.43 True fake: not a misassembly (possible transposable element) 30785601 30786611 30585373 30586383 NC_060944.1 CM021587.2 98.77 True indel: stretch of mismatches 30786857 30787978 30586629 30587750 NC_060944.1 CM021587.2 98.48 True indel: stretch of mismatches 30788224 30789345 30587996 30589117 NC_060944.1 CM021587.2 97.95 True indel: indel (<= 5bp) 30789346 30789999 30589119 30589772 NC_060944.1 CM021587.2 98.17 True local misassembly 30793263 30794126 30593036 30593899 NC_060944.1 CM021587.2 98.26 True indel: indel (<= 5bp) 30794127 30795274 30593901 30595048 NC_060944.1 CM021587.2 98.69 True local misassembly 30795835 30797208 30595269 30596642 NC_060944.1 CM021587.2 98.25 True relocation, inconsistency = -49198 30748011 30748609 30596643 30597241 NC_060944.1 CM021587.2 96.86 True indel: indel (<= 5bp) 30748610 30749367 30597246 30598003 NC_060944.1 CM021587.2 97.49 True indel: indel (<= 5bp) 30749368 30750859 30598005 30599496 NC_060944.1 CM021587.2 98.53 True indel: indel (<= 5bp) 30750860 30751586 30599498 30600224 NC_060944.1 CM021587.2 98.76 True relocation, inconsistency = 49852 30801452 30802958 30600238 30601744 NC_060944.1 CM021587.2 99.07 True local misassembly 30803487 30804701 30602107 30603321 NC_060944.1 CM021587.2 98.32 True relocation, inconsistency = -49680 30755022 30759244 30603322 30607549 NC_060944.1 CM021587.2 98.25 True relocation, inconsistency = 49678 30808923 30892244 30607550 30691211 NC_060944.1 CM021587.2 99.24 True translocation 14739114 14739726 30692294 30691682 NC_060939.1 CM021587.2 95.76 True indel: indel (<= 5bp) 14738258 14739113 30693152 30692297 NC_060939.1 CM021587.2 95.79 True translocation 30892261 30913760 30694123 30715622 NC_060944.1 CM021587.2 99.78 True local misassembly 30913738 31330923 30717482 31134662 NC_060944.1 CM021587.2 99.69 True local misassembly 31330913 31348393 31137724 31155206 NC_060944.1 CM021587.2 99.82 True local misassembly 31348211 31483358 31156560 31292390 NC_060944.1 CM021587.2 99.07 True local misassembly 31483332 31628196 31299151 31443933 NC_060944.1 CM021587.2 99.6 True local misassembly 31626327 31628196 31443935 31445805 NC_060944.1 CM021587.2 99.73 True local misassembly 31626327 31628196 31445807 31447677 NC_060944.1 CM021587.2 99.79 True local misassembly 31626327 31628196 31447679 31449549 NC_060944.1 CM021587.2 99.73 True local misassembly 31626327 31628196 31449551 31451421 NC_060944.1 CM021587.2 99.73 True local misassembly 31626327 31628196 31451423 31453293 NC_060944.1 CM021587.2 99.73 True local misassembly 31626327 31628196 31453295 31455165 NC_060944.1 CM021587.2 99.73 True translocation 7862002 7863277 31456476 31457751 NC_060938.1 CM021587.2 95.92 True local misassembly 7863505 7865067 31458146 31459708 NC_060938.1 CM021587.2 97.06 True translocation 31628158 31634138 31461901 31467881 NC_060944.1 CM021587.2 99.83 True local misassembly 31634650 31728495 31467882 31561936 NC_060944.1 CM021587.2 99.4 True local misassembly 31730962 31975167 31564407 31809035 NC_060944.1 CM021587.2 99.73 True local misassembly 31979161 32070894 31813018 31904977 NC_060944.1 CM021587.2 99.2 True local misassembly 32072028 32072537 31906129 31906638 NC_060944.1 CM021587.2 98.04 True local misassembly 32074620 32294652 31908591 32128541 NC_060944.1 CM021587.2 99.02 True indel: indel (> 5bp) 32294769 32364858 32128648 32198993 NC_060944.1 CM021587.2 98.62 True indel: indel (> 5bp) 32365160 32365860 32199246 32199946 NC_060944.1 CM021587.2 98.72 True local misassembly 32370580 32371291 32204610 32205321 NC_060944.1 CM021587.2 98.46 True local misassembly 32374214 32375684 32208199 32209669 NC_060944.1 CM021587.2 98.84 True local misassembly 32377025 32377696 32211027 32211698 NC_060944.1 CM021587.2 98.81 True local misassembly 32378670 32405144 32212541 32238895 NC_060944.1 CM021587.2 98.19 True indel: indel (<= 5bp) 32405199 32601131 32238948 32434723 NC_060944.1 CM021587.2 98.98 True local misassembly 32601128 32612971 32434920 32446558 NC_060944.1 CM021587.2 97.19 True local misassembly 32613822 32652942 32447414 32486634 NC_060944.1 CM021587.2 99.01 True indel: indel (> 5bp) 32653303 32857876 32486919 32690914 NC_060944.1 CM021587.2 98.67 True local misassembly 32859147 32866060 32692134 32699002 NC_060944.1 CM021587.2 98.63 True local misassembly 32867604 34346778 32700562 34180785 NC_060944.1 CM021587.2 99.64 True local misassembly 34348192 36537744 34181017 36366985 NC_060944.1 CM021587.2 99.4 True indel: indel (> 5bp) 36537856 36817582 36367027 36646601 NC_060944.1 CM021587.2 99.73 True local misassembly 36818484 38688612 36647069 38517446 NC_060944.1 CM021587.2 99.79 True indel: stretch of mismatches 38688779 40819969 38517613 40648717 NC_060944.1 CM021587.2 99.8 True local misassembly 40820444 42928089 40649062 42756835 NC_060944.1 CM021587.2 99.81 True indel: indel (> 5bp) 42928224 43009543 42756952 42838248 NC_060944.1 CM021587.2 99.86 True indel: indel (<= 5bp) 43009647 45430212 42838357 45256109 NC_060944.1 CM021587.2 99.64 True local misassembly 45429709 45868672 45256110 45695508 NC_060944.1 CM021587.2 99.74 True local misassembly 45869437 47475101 45696647 47298977 NC_060944.1 CM021587.2 99.62 True local misassembly 47475626 49575916 47299126 49399841 NC_060944.1 CM021587.2 99.8 True local misassembly 49577886 49580283 49400342 49402739 NC_060944.1 CM021587.2 99.58 True local misassembly 49580284 49582680 49402838 49405234 NC_060944.1 CM021587.2 99.87 True local misassembly 49582779 49585698 49405235 49408154 NC_060944.1 CM021587.2 99.69 True indel: stretch of mismatches 49586066 49587065 49408522 49409521 NC_060944.1 CM021587.2 99.7 True indel: indel (<= 5bp) 49587066 49587693 49409524 49410151 NC_060944.1 CM021587.2 99.36 True indel: indel (<= 5bp) 49587695 49588870 49410152 49411327 NC_060944.1 CM021587.2 99.4 True indel: indel (<= 5bp) 49588872 49590158 49411328 49412614 NC_060944.1 CM021587.2 99.69 True indel: stretch of mismatches 49590433 49592740 49412889 49415196 NC_060944.1 CM021587.2 99.61 True local misassembly 49593445 49603041 49415923 49425519 NC_060944.1 CM021587.2 99.84 True indel: indel (<= 5bp) 49603042 49604474 49425521 49426953 NC_060944.1 CM021587.2 99.86 True indel: stretch of mismatches 49604587 49605562 49427066 49428041 NC_060944.1 CM021587.2 99.69 True indel: indel (<= 5bp) 49605564 49615699 49428042 49438177 NC_060944.1 CM021587.2 99.81 True indel: stretch of mismatches 49615932 49639621 49438410 49462099 NC_060944.1 CM021587.2 99.86 True indel: indel (<= 5bp) 49639842 49644442 49462318 49466918 NC_060944.1 CM021587.2 99.87 True local misassembly 49645129 49645664 49466919 49467454 NC_060944.1 CM021587.2 99.81 True local misassembly 49648302 49649498 49467455 49468651 NC_060944.1 CM021587.2 99.08 True local misassembly 49653802 50273818 49469537 50084128 NC_060944.1 CM021587.2 98.92 True local misassembly 50275273 50275920 50084943 50085590 NC_060944.1 CM021587.2 97.53 True local misassembly 50277983 50278512 50085591 50086120 NC_060944.1 CM021587.2 98.68 True local misassembly 50283156 50284197 50087041 50088082 NC_060944.1 CM021587.2 99.23 True indel: indel (> 5bp) 50284498 52435794 50088436 52239139 NC_060944.1 CM021587.2 99.71 True local misassembly 52436195 57720162 52239284 57517419 NC_060944.1 CM021587.2 99.57 True indel: indel (> 5bp) 57720352 59976179 57517644 59773122 NC_060944.1 CM021587.2 99.81 True local misassembly 59977813 61139141 59774598 60935993 NC_060944.1 CM021587.2 99.81 True indel: indel (> 5bp) 61139137 62986306 60936008 62784256 NC_060944.1 CM021587.2 99.64 True local misassembly 62986801 63354304 62784647 63153941 NC_060944.1 CM021587.2 99.0 True indel: indel (> 5bp) 63354346 64003933 63154040 63800605 NC_060944.1 CM021587.2 99.22 True local misassembly 64004106 64144940 63800606 63941807 NC_060944.1 CM021587.2 99.19 True local misassembly 64144902 64674904 63942200 64472018 NC_060944.1 CM021587.2 99.46 True local misassembly 64675110 64903962 64472116 64701087 NC_060944.1 CM021587.2 98.55 True local misassembly 64904357 64970426 64703080 64769718 NC_060944.1 CM021587.2 98.62 True local misassembly 64972683 65168084 64773151 64968011 NC_060944.1 CM021587.2 98.9 True local misassembly 65168717 65251952 64968264 65051334 NC_060944.1 CM021587.2 99.17 True local misassembly 65252086 65297929 65051644 65097898 NC_060944.1 CM021587.2 98.7 True local misassembly 65298163 65508382 65098001 65305544 NC_060944.1 CM021587.2 97.96 True local misassembly 65513925 65768596 65309407 65564610 NC_060944.1 CM021587.2 99.04 True local misassembly 65769410 65939867 65565915 65737629 NC_060944.1 CM021587.2 98.88 True local misassembly 65941314 65942418 65739311 65740415 NC_060944.1 CM021587.2 99.55 True indel: indel (> 5bp) 65942480 66208069 65740508 66007894 NC_060944.1 CM021587.2 98.03 True CONTIG CM021587.2 66010062 misassembled 99751243 99753148 5857 3955 NC_060939.1 CM021588.2 98.08 True translocation 3228 6014 8488 11150 NC_060928.1 CM021588.2 98.49 True translocation 3010 99566 11151 107125 NC_060945.1 CM021588.2 98.75 True indel: indel (> 5bp) 99782 108219 107293 115730 NC_060945.1 CM021588.2 99.4 True local misassembly 109156 116003 116664 123367 NC_060945.1 CM021588.2 97.08 True indel: stretch of mismatches 116178 130813 123542 138177 NC_060945.1 CM021588.2 99.86 True indel: stretch of mismatches 131107 152927 138471 160290 NC_060945.1 CM021588.2 99.67 True local misassembly 153216 167981 160291 175340 NC_060945.1 CM021588.2 97.6 True indel: stretch of mismatches 168214 182633 175573 190001 NC_060945.1 CM021588.2 99.21 True local misassembly 182778 205245 190002 212336 NC_060945.1 CM021588.2 96.89 True local misassembly 205390 228716 212337 235793 NC_060945.1 CM021588.2 98.83 True translocation 226912 280340 235794 289240 NC_060946.1 CM021588.2 99.35 True relocation, inconsistency = 63877 344218 364276 289241 309167 NC_060946.1 CM021588.2 97.75 True translocation 293117 331474 309836 348165 NC_060945.1 CM021588.2 98.85 True indel: indel (> 5bp) 331616 364660 348259 380860 NC_060945.1 CM021588.2 97.26 True local misassembly 365298 475139 381602 491459 NC_060945.1 CM021588.2 98.82 True fake: not a misassembly (possible transposable element) 789164 791614 491460 493841 NC_060938.1 CM021588.2 96.72 True fake: not a misassembly (possible transposable element) 477456 514987 493842 531369 NC_060945.1 CM021588.2 99.3 True local misassembly 515936 578750 532111 594932 NC_060945.1 CM021588.2 99.54 True local misassembly 579043 605863 595360 621425 NC_060945.1 CM021588.2 95.19 True indel: indel (> 5bp) 606001 609200 621629 624758 NC_060945.1 CM021588.2 96.0 True indel: indel (<= 5bp) 609358 688052 624915 703745 NC_060945.1 CM021588.2 99.09 True relocation, inconsistency = -66706 621347 623444 703746 705825 NC_060945.1 CM021588.2 95.25 True relocation, inconsistency = 80297 703742 705364 705826 707448 NC_060945.1 CM021588.2 96.54 True indel: indel (> 5bp) 705665 706676 707817 708828 NC_060945.1 CM021588.2 96.44 True indel: indel (<= 5bp) 706678 707268 708829 709419 NC_060945.1 CM021588.2 97.97 True indel: indel (<= 5bp) 707270 708497 709420 710647 NC_060945.1 CM021588.2 95.2 True indel: indel (<= 5bp) 708498 709243 710649 711394 NC_060945.1 CM021588.2 98.12 True indel: indel (> 5bp) 709544 710555 711763 712774 NC_060945.1 CM021588.2 97.43 True indel: indel (<= 5bp) 710557 711147 712775 713365 NC_060945.1 CM021588.2 97.63 True relocation, inconsistency = -13475 698610 810233 714303 825936 NC_060945.1 CM021588.2 98.79 True relocation, inconsistency = -15846 794567 837175 826116 868665 NC_060945.1 CM021588.2 97.55 True relocation, inconsistency = 15918 856523 895341 872095 910910 NC_060945.1 CM021588.2 99.68 True relocation, inconsistency = 24911 920253 921597 910911 912255 NC_060945.1 CM021588.2 96.37 True indel: indel (<= 5bp) 921599 925545 912256 916202 NC_060945.1 CM021588.2 97.59 True indel: indel (> 5bp) 925672 931463 916259 922050 NC_060945.1 CM021588.2 97.81 True indel: indel (> 5bp) 931464 934206 922119 924861 NC_060945.1 CM021588.2 98.14 True indel: indel (<= 5bp) 934208 937317 924862 927971 NC_060945.1 CM021588.2 98.07 True indel: indel (> 5bp) 937318 938346 928040 929068 NC_060945.1 CM021588.2 97.96 True relocation, inconsistency = -24770 914204 992832 929696 1008044 NC_060945.1 CM021588.2 98.39 True indel: indel (<= 5bp) 993050 1065559 1008261 1080700 NC_060945.1 CM021588.2 99.44 True local misassembly 1066315 1176225 1081458 1190967 NC_060945.1 CM021588.2 98.26 True local misassembly 1178238 1178774 1192831 1193367 NC_060945.1 CM021588.2 95.53 True indel: indel (> 5bp) 1179019 1179733 1193587 1194301 NC_060945.1 CM021588.2 97.48 True local misassembly 1180837 1181746 1195420 1196329 NC_060945.1 CM021588.2 99.23 True local misassembly 1183014 1183623 1197593 1198202 NC_060945.1 CM021588.2 99.51 True indel: indel (> 5bp) 1184076 1184584 1198700 1199208 NC_060945.1 CM021588.2 100.0 True indel: indel (> 5bp) 1185092 1185708 1199656 1200272 NC_060945.1 CM021588.2 99.03 True local misassembly 1188450 1198182 1202905 1212543 NC_060945.1 CM021588.2 95.72 True translocation 1176299 1177090 1213370 1214161 NC_060939.1 CM021588.2 98.48 True local misassembly 1178015 1178973 1215087 1216045 NC_060939.1 CM021588.2 99.27 True translocation 1202289 1205635 1216488 1219748 NC_060945.1 CM021588.2 95.13 True translocation 1197858 1198367 1220542 1221041 NC_060939.1 CM021588.2 96.27 True local misassembly 1199148 1199752 1221757 1222371 NC_060939.1 CM021588.2 97.72 True local misassembly 1201963 1202748 1224437 1225222 NC_060939.1 CM021588.2 99.87 True indel: indel (<= 5bp) 1202754 1203253 1225223 1225722 NC_060939.1 CM021588.2 100.0 True indel: indel (> 5bp) 1203369 1203874 1225828 1226333 NC_060939.1 CM021588.2 100.0 True local misassembly 1204464 1205571 1226892 1227999 NC_060939.1 CM021588.2 100.0 True local misassembly 1206776 1208199 1229204 1230627 NC_060939.1 CM021588.2 100.0 True indel: indel (> 5bp) 1208436 1209273 1230884 1231721 NC_060939.1 CM021588.2 99.88 True indel: indel (> 5bp) 1209284 1210276 1231722 1232714 NC_060939.1 CM021588.2 100.0 True indel: indel (> 5bp) 1210277 1211589 1232730 1234042 NC_060939.1 CM021588.2 100.0 True indel: indel (<= 5bp) 1211595 1212225 1234043 1234673 NC_060939.1 CM021588.2 100.0 True local misassembly 1213452 1214111 1235600 1236259 NC_060939.1 CM021588.2 99.7 True local misassembly 1214901 1215596 1236792 1237487 NC_060939.1 CM021588.2 99.28 True translocation 1224251 1228964 1238062 1242735 NC_060945.1 CM021588.2 98.3 True local misassembly 1229748 1248336 1243476 1261813 NC_060945.1 CM021588.2 96.85 True indel: indel (> 5bp) 1248600 1249343 1262040 1262783 NC_060945.1 CM021588.2 98.52 True local misassembly 1255191 1320341 1268535 1333609 NC_060945.1 CM021588.2 99.28 True translocation 4859530 4862070 1333610 1336193 NC_060937.1 CM021588.2 95.54 True translocation 1847899 1849927 1336682 1338705 NC_060945.1 CM021588.2 97.48 True relocation, inconsistency = -524350 1325578 1345031 1338706 1358162 NC_060945.1 CM021588.2 98.99 True fake: not a misassembly (possible transposable element) 1257888 1261981 1385490 1389500 NC_060939.1 CM021588.2 95.61 True fake: not a misassembly (possible transposable element) 1380687 1501424 1393664 1514343 NC_060945.1 CM021588.2 99.72 True relocation, inconsistency = -222696 1278729 1279812 1514344 1515427 NC_060945.1 CM021588.2 97.93 True relocation, inconsistency = 11341 1291373 1294162 1515647 1518431 NC_060945.1 CM021588.2 98.5 True translocation 3396617 3400565 1518692 1522625 NC_060946.1 CM021588.2 96.76 True translocation 1510080 1581079 1523019 1594019 NC_060945.1 CM021588.2 99.67 True relocation, inconsistency = 342230 1923619 1924309 1594329 1595019 NC_060945.1 CM021588.2 95.95 True local misassembly 1925031 1925628 1595735 1596332 NC_060945.1 CM021588.2 96.03 True translocation 4530498 4531110 1596333 1596945 NC_060937.1 CM021588.2 98.04 True indel: indel (<= 5bp) 4531111 4531620 1596947 1597456 NC_060937.1 CM021588.2 97.45 True indel: indel (<= 5bp) 4531621 4532222 1597462 1598063 NC_060937.1 CM021588.2 96.84 True indel: indel (<= 5bp) 4532376 4534670 1598213 1600507 NC_060937.1 CM021588.2 99.3 True indel: indel (> 5bp) 4534755 4535432 1600508 1601185 NC_060937.1 CM021588.2 97.64 True relocation, inconsistency = -1139265 3396185 3402240 1601203 1607260 NC_060937.1 CM021588.2 96.72 True translocation 95331788 95333582 1621923 1623712 NC_060927.1 CM021588.2 96.3 True translocation 3349811 3351998 1623713 1625897 NC_060946.1 CM021588.2 96.58 True translocation 1279627 1282581 1625905 1628859 NC_060939.1 CM021588.2 97.43 True translocation 915981 916507 1636305 1636831 NC_060937.1 CM021588.2 98.48 True local misassembly 917384 918134 1637593 1638343 NC_060937.1 CM021588.2 97.47 True translocation 1630858 1644682 1643543 1657325 NC_060945.1 CM021588.2 99.15 True translocation 1368439 1370147 1657735 1659401 NC_060939.1 CM021588.2 95.73 True relocation, inconsistency = 126162 1497156 1498718 1660248 1661804 NC_060939.1 CM021588.2 96.29 True translocation 1654936 1657878 1661805 1664747 NC_060945.1 CM021588.2 98.61 True translocation 2068297 2068983 1666989 1666303 NC_060937.1 CM021588.2 97.38 True translocation 1681485 1682410 1667106 1668027 NC_060945.1 CM021588.2 97.62 True relocation, inconsistency = -143240 1539240 1540204 1668097 1669061 NC_060945.1 CM021588.2 97.62 True translocation 3107619 3108243 1669115 1669739 NC_060946.1 CM021588.2 97.33 True translocation 1657040 1701566 1669740 1714268 NC_060945.1 CM021588.2 99.58 True translocation 3349811 3352046 1714567 1716804 NC_060946.1 CM021588.2 96.69 True translocation 1860968 1866987 1761120 1767099 NC_060945.1 CM021588.2 96.47 True relocation, inconsistency = -112623 1755639 1762942 1768374 1775684 NC_060945.1 CM021588.2 97.66 True indel: indel (> 5bp) 1763466 1765609 1776185 1778328 NC_060945.1 CM021588.2 97.95 True translocation 1500509 1501140 1779782 1780412 NC_060939.1 CM021588.2 97.94 True translocation 4905996 4909706 1780744 1784449 NC_060937.1 CM021588.2 96.15 True translocation 95074247 95075879 1784630 1786257 NC_060927.1 CM021588.2 97.84 True translocation 1773689 1802981 1786258 1815555 NC_060945.1 CM021588.2 99.71 True translocation 2730830 2731580 1815556 1816306 NC_060946.1 CM021588.2 97.73 True translocation 1246751 1247310 1817614 1818173 NC_060945.1 CM021588.2 96.96 True translocation 4528164 4530476 1819961 1822269 NC_060937.1 CM021588.2 97.06 True relocation, inconsistency = -3036387 1495503 1497060 1823683 1825244 NC_060937.1 CM021588.2 96.67 True translocation 1484734 1487524 1825838 1828637 NC_060945.1 CM021588.2 95.9 True translocation 1369136 1370352 1829829 1831045 NC_060939.1 CM021588.2 98.19 True indel: indel (<= 5bp) 1370358 1370891 1831046 1831579 NC_060939.1 CM021588.2 97.19 True local misassembly 1368439 1370147 1832840 1834548 NC_060939.1 CM021588.2 98.13 True relocation, inconsistency = 117897 1488891 1490332 1835395 1836830 NC_060939.1 CM021588.2 96.17 True translocation 1654689 1660807 1836831 1842950 NC_060945.1 CM021588.2 98.32 True relocation, inconsistency = 169763 1830571 1832050 1842951 1844430 NC_060945.1 CM021588.2 98.61 True translocation 95279937 95284737 1844581 1849341 NC_060927.1 CM021588.2 95.78 True translocation 1732925 1738662 1857402 1863138 NC_060945.1 CM021588.2 97.82 True translocation 1335695 1337057 1863139 1864502 NC_060939.1 CM021588.2 95.11 True translocation 1362071 1365943 1864503 1868368 NC_060945.1 CM021588.2 95.46 True relocation, inconsistency = 490038 1855982 1926366 1868369 1938710 NC_060945.1 CM021588.2 99.63 True fake: not a misassembly (possible transposable element) 2219619 2221853 1938711 1940946 NC_060937.1 CM021588.2 96.42 True fake: not a misassembly (possible transposable element) 1939505 2052938 1951780 2065234 NC_060945.1 CM021588.2 98.43 True indel: indel (> 5bp) 2052991 2350482 2065297 2362666 NC_060945.1 CM021588.2 99.09 True indel: stretch of mismatches 2350773 2356870 2362957 2369028 NC_060945.1 CM021588.2 98.52 True local misassembly 2357018 2500935 2369029 2512957 NC_060945.1 CM021588.2 99.47 True translocation 4279564 4408444 2512958 2641791 NC_060946.1 CM021588.2 99.34 True translocation 2672576 2695070 2641792 2664298 NC_060945.1 CM021588.2 98.84 True local misassembly 2697462 2912433 2664299 2879327 NC_060945.1 CM021588.2 98.89 True indel: indel (> 5bp) 2912506 3109620 2879412 3076391 NC_060945.1 CM021588.2 99.36 True relocation, inconsistency = 671865 3781486 3792687 3076392 3087597 NC_060945.1 CM021588.2 99.1 True relocation, inconsistency = -671846 3120842 3959827 3087598 3926294 NC_060945.1 CM021588.2 99.8 True indel: indel (> 5bp) 3959959 4137367 3926410 4103840 NC_060945.1 CM021588.2 99.36 True indel: indel (> 5bp) 4137499 4181752 4103956 4148136 NC_060945.1 CM021588.2 99.25 True indel: indel (> 5bp) 4181884 4226137 4148252 4192525 NC_060945.1 CM021588.2 99.62 True indel: indel (> 5bp) 4226269 4377202 4192641 4343507 NC_060945.1 CM021588.2 99.41 True indel: indel (<= 5bp) 4377334 4421587 4343638 4387835 NC_060945.1 CM021588.2 99.04 True indel: indel (<= 5bp) 4421719 4510361 4387968 4476605 NC_060945.1 CM021588.2 99.29 True indel: indel (<= 5bp) 4510489 4581217 4476732 4547506 NC_060945.1 CM021588.2 99.32 True indel: indel (> 5bp) 4581349 4669987 4547622 4636309 NC_060945.1 CM021588.2 99.5 True indel: indel (> 5bp) 4670119 4758757 4636425 4725060 NC_060945.1 CM021588.2 99.35 True indel: indel (> 5bp) 4758889 5069452 4725176 5035637 NC_060945.1 CM021588.2 99.32 True indel: indel (> 5bp) 5069584 5158222 5035753 5124354 NC_060945.1 CM021588.2 99.36 True indel: indel (> 5bp) 5158354 5202607 5124470 5168772 NC_060945.1 CM021588.2 99.54 True indel: indel (> 5bp) 5202739 5335762 5168888 5301887 NC_060945.1 CM021588.2 99.34 True indel: indel (> 5bp) 5335894 5720091 5302003 5686198 NC_060945.1 CM021588.2 99.1 True local misassembly 5720242 5832610 5686231 5798830 NC_060945.1 CM021588.2 97.73 True indel: indel (> 5bp) 5832822 5834086 5799027 5800291 NC_060945.1 CM021588.2 99.92 True indel: indel (> 5bp) 5834195 5835980 5800410 5802195 NC_060945.1 CM021588.2 99.44 True indel: indel (<= 5bp) 5835986 5837956 5802196 5804166 NC_060945.1 CM021588.2 99.75 True local misassembly 5838937 5839664 5805137 5805864 NC_060945.1 CM021588.2 99.18 True indel: indel (> 5bp) 5839790 5843284 5805975 5809469 NC_060945.1 CM021588.2 99.51 True indel: indel (> 5bp) 5843295 5845468 5809470 5811643 NC_060945.1 CM021588.2 99.03 True indel: indel (<= 5bp) 5845474 5846088 5811644 5812258 NC_060945.1 CM021588.2 97.56 True indel: indel (> 5bp) 5846258 5847119 5812463 5813324 NC_060945.1 CM021588.2 98.03 True local misassembly 5847848 5848626 5814037 5814815 NC_060945.1 CM021588.2 97.56 True indel: indel (<= 5bp) 5848877 5849437 5815062 5815622 NC_060945.1 CM021588.2 98.57 True local misassembly 5851300 5851952 5817531 5818183 NC_060945.1 CM021588.2 98.32 True local misassembly 5855551 5856331 5821802 5822582 NC_060945.1 CM021588.2 97.95 True local misassembly 5857444 5858255 5823760 5824571 NC_060945.1 CM021588.2 97.54 True indel: indel (<= 5bp) 5858261 5859400 5824572 5825711 NC_060945.1 CM021588.2 99.04 True local misassembly 5859806 5860632 5826007 5826833 NC_060945.1 CM021588.2 97.94 True indel: indel (<= 5bp) 5860638 5863191 5826834 5829387 NC_060945.1 CM021588.2 99.14 True indel: indel (<= 5bp) 5863391 5865149 5829592 5831350 NC_060945.1 CM021588.2 98.64 True local misassembly 5866768 5867297 5833135 5833664 NC_060945.1 CM021588.2 97.55 True local misassembly 5868926 5869480 5835262 5835816 NC_060945.1 CM021588.2 98.56 True local misassembly 5872727 5873523 5839096 5839892 NC_060945.1 CM021588.2 97.99 True indel: indel (> 5bp) 5873684 5874327 5840029 5840672 NC_060945.1 CM021588.2 98.91 True local misassembly 5874991 5875603 5841306 5841918 NC_060945.1 CM021588.2 98.37 True local misassembly 5879300 5880185 5845571 5846456 NC_060945.1 CM021588.2 98.53 True local misassembly 5883483 5884334 5849765 5850616 NC_060945.1 CM021588.2 97.89 True local misassembly 5884335 5885051 5850722 5851438 NC_060945.1 CM021588.2 98.47 True local misassembly 5886712 5887261 5853139 5853688 NC_060945.1 CM021588.2 98.91 True local misassembly 5888069 5888685 5854580 5855196 NC_060945.1 CM021588.2 97.73 True local misassembly 5890174 5890781 5856740 5857347 NC_060945.1 CM021588.2 97.7 True local misassembly 5892626 5893247 5859018 5859639 NC_060945.1 CM021588.2 98.23 True local misassembly 5895191 5895964 5861519 5862292 NC_060945.1 CM021588.2 98.45 True indel: indel (<= 5bp) 5895970 5897068 5862293 5863391 NC_060945.1 CM021588.2 97.54 True local misassembly 5897953 5898671 5864073 5864791 NC_060945.1 CM021588.2 98.61 True indel: indel (<= 5bp) 5898677 5899260 5864792 5865375 NC_060945.1 CM021588.2 97.95 True local misassembly 5900216 5901347 5866267 5867398 NC_060945.1 CM021588.2 97.88 True indel: indel (<= 5bp) 5901353 5902321 5867399 5868367 NC_060945.1 CM021588.2 98.25 True indel: indel (> 5bp) 5902380 5902972 5868446 5869038 NC_060945.1 CM021588.2 97.64 True indel: indel (> 5bp) 5903198 5903720 5869299 5869821 NC_060945.1 CM021588.2 98.28 True indel: indel (> 5bp) 5903880 5905034 5869971 5871125 NC_060945.1 CM021588.2 98.1 True local misassembly 5906081 5906605 5872202 5872726 NC_060945.1 CM021588.2 97.33 True local misassembly 5907164 5907733 5873235 5873804 NC_060945.1 CM021588.2 99.3 True local misassembly 5908404 5908979 5874470 5875045 NC_060945.1 CM021588.2 96.88 True indel: indel (> 5bp) 5908989 5909979 5875046 5876036 NC_060945.1 CM021588.2 99.19 True indel: indel (> 5bp) 5910233 5910968 5876266 5877001 NC_060945.1 CM021588.2 98.23 True indel: indel (> 5bp) 5911246 5912104 5877269 5878127 NC_060945.1 CM021588.2 98.25 True indel: indel (> 5bp) 5912383 5917508 5878396 5883530 NC_060945.1 CM021588.2 98.29 True local misassembly 5924456 5925066 5890643 5891253 NC_060945.1 CM021588.2 98.36 True local misassembly 5926028 5926829 5892234 5893035 NC_060945.1 CM021588.2 96.88 True indel: indel (<= 5bp) 5927006 5927546 5893217 5893757 NC_060945.1 CM021588.2 97.97 True local misassembly 5929891 5973585 5895970 5939358 NC_060945.1 CM021588.2 97.53 True local misassembly 5974609 6035332 5940397 6001018 NC_060945.1 CM021588.2 95.56 True indel: stretch of mismatches 6035379 6042302 6001065 6007851 NC_060945.1 CM021588.2 95.62 True local misassembly 6046936 6062875 6012496 6028539 NC_060945.1 CM021588.2 96.18 True indel: stretch of mismatches 6062972 6091323 6028636 6056991 NC_060945.1 CM021588.2 99.19 True indel: indel (<= 5bp) 6091496 6119679 6057165 6085346 NC_060945.1 CM021588.2 99.23 True local misassembly 6120708 6170175 6086373 6135694 NC_060945.1 CM021588.2 97.87 True local misassembly 6170780 6171557 6136301 6137078 NC_060945.1 CM021588.2 98.07 True local misassembly 6171764 6174300 6137079 6139615 NC_060945.1 CM021588.2 97.83 True indel: indel (<= 5bp) 6174302 6174807 6139616 6140121 NC_060945.1 CM021588.2 96.44 True indel: indel (<= 5bp) 6174970 6195181 6140281 6160411 NC_060945.1 CM021588.2 95.89 True indel: indel (<= 5bp) 6195306 6205874 6160537 6171040 NC_060945.1 CM021588.2 96.43 True indel: indel (<= 5bp) 6206045 6232830 6171212 6198126 NC_060945.1 CM021588.2 98.86 True indel: stretch of mismatches 6232874 6286433 6198170 6251758 NC_060945.1 CM021588.2 98.17 True indel: indel (<= 5bp) 6286596 6316502 6251920 6281829 NC_060945.1 CM021588.2 96.86 True indel: indel (<= 5bp) 6316685 6319059 6282013 6284386 NC_060945.1 CM021588.2 99.41 True local misassembly 6320356 6321834 6285680 6287158 NC_060945.1 CM021588.2 98.85 True indel: indel (<= 5bp) 6322053 6330629 6287378 6295762 NC_060945.1 CM021588.2 95.53 True indel: indel (<= 5bp) 6331100 6362212 6296230 6327304 NC_060945.1 CM021588.2 98.31 True indel: indel (<= 5bp) 6362609 6397841 6327702 6362978 NC_060945.1 CM021588.2 96.03 True local misassembly 6397993 6414627 6363285 6379886 NC_060945.1 CM021588.2 95.74 True local misassembly 6415339 6416678 6380467 6381806 NC_060945.1 CM021588.2 98.81 True indel: indel (> 5bp) 6416769 6417399 6381907 6382537 NC_060945.1 CM021588.2 98.73 True indel: indel (<= 5bp) 6417400 6417988 6382539 6383127 NC_060945.1 CM021588.2 97.28 True indel: indel (> 5bp) 6417989 6418526 6383138 6383675 NC_060945.1 CM021588.2 98.14 True local misassembly 6420349 6421938 6385364 6386953 NC_060945.1 CM021588.2 98.3 True indel: indel (> 5bp) 6422353 6423158 6387350 6388155 NC_060945.1 CM021588.2 97.52 True indel: indel (<= 5bp) 6423164 6424267 6388156 6389259 NC_060945.1 CM021588.2 97.19 True local misassembly 6426965 6427624 6391858 6392517 NC_060945.1 CM021588.2 98.64 True local misassembly 6429215 6430417 6394000 6395207 NC_060945.1 CM021588.2 98.34 True local misassembly 6435701 6436734 6400340 6401373 NC_060945.1 CM021588.2 95.94 True local misassembly 6447337 6449070 6411590 6413298 NC_060945.1 CM021588.2 97.29 True local misassembly 6453603 6456828 6417764 6420931 NC_060945.1 CM021588.2 95.64 True local misassembly 6467367 6468432 6431263 6432328 NC_060945.1 CM021588.2 99.62 True local misassembly 6479855 6488321 6443266 6451767 NC_060945.1 CM021588.2 96.02 True local misassembly 6488582 6682052 6451883 6645121 NC_060945.1 CM021588.2 98.96 True local misassembly 6685655 6686342 6648411 6649098 NC_060945.1 CM021588.2 97.82 True local misassembly 6686985 6688179 6649696 6650890 NC_060945.1 CM021588.2 98.08 True indel: indel (> 5bp) 6688215 6689289 6650891 6651965 NC_060945.1 CM021588.2 97.58 True local misassembly 6691896 6692737 6654477 6655304 NC_060945.1 CM021588.2 95.61 True local misassembly 6697823 6699036 6660024 6661237 NC_060945.1 CM021588.2 97.12 True local misassembly 6701683 6702480 6663770 6664567 NC_060945.1 CM021588.2 97.74 True local misassembly 6703922 6704560 6666008 6666646 NC_060945.1 CM021588.2 97.18 True local misassembly 6707446 6708023 6669382 6669959 NC_060945.1 CM021588.2 98.44 True indel: indel (<= 5bp) 6708317 6708939 6670248 6670870 NC_060945.1 CM021588.2 99.52 True indel: indel (<= 5bp) 6708945 6709643 6670871 6671569 NC_060945.1 CM021588.2 99.71 True local misassembly 6712625 6713131 6674501 6675007 NC_060945.1 CM021588.2 98.42 True local misassembly 6715569 6716139 6677496 6678066 NC_060945.1 CM021588.2 99.3 True indel: indel (> 5bp) 6716443 6717277 6678315 6679149 NC_060945.1 CM021588.2 97.84 True local misassembly 6718819 6719588 6680715 6681484 NC_060945.1 CM021588.2 98.96 True indel: indel (<= 5bp) 6719589 6720965 6681490 6682866 NC_060945.1 CM021588.2 99.06 True local misassembly 6722734 6723244 6684595 6685105 NC_060945.1 CM021588.2 97.06 True indel: indel (<= 5bp) 6723499 6724250 6685355 6686106 NC_060945.1 CM021588.2 96.68 True local misassembly 6724866 6727379 6686702 6689220 NC_060945.1 CM021588.2 99.33 True indel: indel (<= 5bp) 6727599 6728504 6689435 6690346 NC_060945.1 CM021588.2 96.31 True local misassembly 6729710 6730394 6691490 6692174 NC_060945.1 CM021588.2 99.42 True local misassembly 6730886 6731718 6692727 6693559 NC_060945.1 CM021588.2 97.96 True indel: indel (> 5bp) 6731719 6732485 6693575 6694341 NC_060945.1 CM021588.2 95.31 True local misassembly 6735049 6735944 6696619 6697514 NC_060945.1 CM021588.2 99.33 True local misassembly 6737189 6737975 6698840 6699626 NC_060945.1 CM021588.2 99.49 True local misassembly 6739557 6740411 6701127 6701981 NC_060945.1 CM021588.2 99.06 True indel: indel (> 5bp) 6740412 6741169 6702062 6702819 NC_060945.1 CM021588.2 99.21 True local misassembly 6741992 6742788 6703666 6704462 NC_060945.1 CM021588.2 99.37 True indel: indel (<= 5bp) 6743125 6743713 6704794 6705387 NC_060945.1 CM021588.2 97.64 True local misassembly 6744370 6750992 6706024 6712652 NC_060945.1 CM021588.2 95.11 True local misassembly 6754807 6755397 6716215 6716805 NC_060945.1 CM021588.2 98.31 True local misassembly 6761087 6761608 6722400 6722921 NC_060945.1 CM021588.2 97.7 True local misassembly 6764691 6765215 6725920 6726444 NC_060945.1 CM021588.2 98.29 True indel: indel (<= 5bp) 6765216 6765834 6726450 6727068 NC_060945.1 CM021588.2 97.9 True local misassembly 6766463 6767127 6727658 6728302 NC_060945.1 CM021588.2 95.19 True indel: indel (> 5bp) 6767404 6783270 6728569 6744430 NC_060945.1 CM021588.2 98.51 True indel: indel (> 5bp) 6783471 6792275 6744647 6753466 NC_060945.1 CM021588.2 98.81 True indel: indel (> 5bp) 6792724 6794277 6753934 6755487 NC_060945.1 CM021588.2 99.87 True indel: stretch of mismatches 6794439 6795117 6755649 6756327 NC_060945.1 CM021588.2 99.56 True indel: indel (> 5bp) 6795204 6799343 6756424 6760568 NC_060945.1 CM021588.2 99.32 True local misassembly 6801660 6806452 6762752 6767549 NC_060945.1 CM021588.2 99.08 True indel: indel (> 5bp) 6806753 6809623 6767875 6770740 NC_060945.1 CM021588.2 98.5 True local misassembly 6813326 6813917 6774309 6774900 NC_060945.1 CM021588.2 99.16 True local misassembly 6814680 6815611 6775643 6776574 NC_060945.1 CM021588.2 98.61 True local misassembly 6818394 6818966 6779337 6779909 NC_060945.1 CM021588.2 99.48 True local misassembly 6820452 6820964 6781425 6781937 NC_060945.1 CM021588.2 98.83 True local misassembly 6822250 6823030 6783269 6784049 NC_060945.1 CM021588.2 99.1 True local misassembly 6823907 6826797 6784877 6787767 NC_060945.1 CM021588.2 99.27 True local misassembly 6828359 6828863 6789359 6789863 NC_060945.1 CM021588.2 98.02 True local misassembly 6830122 6830793 6791162 6791833 NC_060945.1 CM021588.2 99.55 True local misassembly 6831623 6832289 6792698 6793364 NC_060945.1 CM021588.2 99.25 True local misassembly 6837091 6838793 6797958 6799634 NC_060945.1 CM021588.2 96.37 True local misassembly 6839484 6863580 6800290 6824593 NC_060945.1 CM021588.2 95.25 True indel: indel (> 5bp) 6863759 6865381 6824764 6826387 NC_060945.1 CM021588.2 96.8 True local misassembly 6866000 6867796 6827003 6828809 NC_060945.1 CM021588.2 95.74 True local misassembly 6868796 6869991 6829796 6830991 NC_060945.1 CM021588.2 95.9 True local misassembly 6870639 6872592 6831625 6833578 NC_060945.1 CM021588.2 96.22 True local misassembly 6873801 6875001 6834779 6835979 NC_060945.1 CM021588.2 96.92 True local misassembly 6876320 6877336 6837297 6838313 NC_060945.1 CM021588.2 97.25 True indel: indel (> 5bp) 6877539 6885155 6838509 6846123 NC_060945.1 CM021588.2 96.75 True indel: indel (<= 5bp) 6885505 6886694 6846470 6847659 NC_060945.1 CM021588.2 95.97 True local misassembly 6888181 6890013 6849132 6850966 NC_060945.1 CM021588.2 97.06 True local misassembly 6890649 7197906 6851604 7158788 NC_060945.1 CM021588.2 99.23 True indel: indel (> 5bp) 7198083 7262775 7158940 7224041 NC_060945.1 CM021588.2 96.48 True indel: indel (> 5bp) 7262845 7274775 7224096 7236086 NC_060945.1 CM021588.2 97.7 True indel: indel (> 5bp) 7274875 7279158 7236200 7240573 NC_060945.1 CM021588.2 95.51 True local misassembly 7284682 7285192 7245573 7246083 NC_060945.1 CM021588.2 99.02 True local misassembly 7287241 7297953 7247986 7258575 NC_060945.1 CM021588.2 96.31 True local misassembly 7300054 7300611 7260479 7261036 NC_060945.1 CM021588.2 98.39 True indel: indel (<= 5bp) 7300617 7301313 7261037 7261733 NC_060945.1 CM021588.2 98.28 True indel: indel (> 5bp) 7301572 7303273 7261982 7263683 NC_060945.1 CM021588.2 99.12 True local misassembly 7305520 7306833 7265715 7267003 NC_060945.1 CM021588.2 96.88 True local misassembly 7307910 7308912 7267927 7268914 NC_060945.1 CM021588.2 96.61 True local misassembly 7310043 7310618 7269964 7270519 NC_060945.1 CM021588.2 95.66 True indel: indel (> 5bp) 7310859 7318662 7270830 7278688 NC_060945.1 CM021588.2 96.66 True local misassembly 7321804 7322466 7281556 7282218 NC_060945.1 CM021588.2 97.74 True local misassembly 7328608 7336193 7288280 7295885 NC_060945.1 CM021588.2 97.26 True local misassembly 7338110 7338699 7297731 7298305 NC_060945.1 CM021588.2 95.25 True local misassembly 7342776 7346044 7302244 7305517 NC_060945.1 CM021588.2 96.22 True local misassembly 7350096 7350765 7309589 7310258 NC_060945.1 CM021588.2 98.36 True local misassembly 7355076 7356102 7314245 7315271 NC_060945.1 CM021588.2 100.0 True local misassembly 7360279 7361722 7319350 7320793 NC_060945.1 CM021588.2 100.0 True local misassembly 7362312 7379732 7321493 7338763 NC_060945.1 CM021588.2 97.34 True local misassembly 7380761 7696647 7339667 7655429 NC_060945.1 CM021588.2 99.47 True local misassembly 7697914 7700349 7656642 7659022 NC_060945.1 CM021588.2 96.52 True local misassembly 7702097 7702606 7660704 7661213 NC_060945.1 CM021588.2 98.82 True indel: indel (<= 5bp) 7702607 7703114 7661219 7661726 NC_060945.1 CM021588.2 98.43 True local misassembly 7705024 7705575 7663726 7664277 NC_060945.1 CM021588.2 99.64 True local misassembly 7714795 7715928 7673262 7674395 NC_060945.1 CM021588.2 99.56 True local misassembly 7722212 7735167 7680365 7693272 NC_060945.1 CM021588.2 96.76 True indel: indel (> 5bp) 7735536 7748233 7693657 7706350 NC_060945.1 CM021588.2 99.73 True indel: stretch of mismatches 7748311 7766784 7706428 7724891 NC_060945.1 CM021588.2 99.34 True local misassembly 7769692 7770349 7727878 7728531 NC_060945.1 CM021588.2 96.81 True local misassembly 7772643 8231300 7730789 8189304 NC_060945.1 CM021588.2 99.52 True relocation, inconsistency = 11741 8243042 8270157 8189305 8216421 NC_060945.1 CM021588.2 98.62 True local misassembly 8268776 8878260 8216422 8825868 NC_060945.1 CM021588.2 99.96 True translocation 11806169 11808200 8825869 8827900 NC_060937.1 CM021588.2 97.98 True translocation 8878077 9388014 8827901 9338064 NC_060945.1 CM021588.2 99.12 True relocation, inconsistency = 18312 9406327 9408900 9338065 9340632 NC_060945.1 CM021588.2 95.83 True indel: stretch of mismatches 9408954 9419548 9340686 9351275 NC_060945.1 CM021588.2 96.38 True translocation 12406259 12408546 9351276 9353569 NC_060937.1 CM021588.2 95.81 True translocation 9403540 9408474 9353591 9358524 NC_060945.1 CM021588.2 95.79 True indel: stretch of mismatches 9408581 9415852 9358631 9365902 NC_060945.1 CM021588.2 95.47 True relocation, inconsistency = 18311 9434205 9446817 9365944 9378555 NC_060945.1 CM021588.2 96.04 True indel: indel (<= 5bp) 9446824 9995195 9378566 9926860 NC_060945.1 CM021588.2 99.63 True relocation, inconsistency = 8967 10004163 10195359 9926861 10118065 NC_060945.1 CM021588.2 99.92 True relocation, inconsistency = 55304 10250664 10699913 10118066 10567218 NC_060945.1 CM021588.2 99.89 True local misassembly 10700554 10843751 10567952 10711324 NC_060945.1 CM021588.2 99.79 True local misassembly 10840236 10849164 10711325 10720249 NC_060945.1 CM021588.2 97.01 True relocation, inconsistency = -7650 10841515 10871052 10720250 10749254 NC_060945.1 CM021588.2 97.92 True relocation, inconsistency = 13979 10885032 10886263 10749255 10750486 NC_060945.1 CM021588.2 96.1 True relocation, inconsistency = 33620 10920679 10927658 10751282 10758262 NC_060945.1 CM021588.2 98.47 True relocation, inconsistency = -18876 10908903 10913045 10758383 10762522 NC_060945.1 CM021588.2 98.36 True local misassembly 10914064 10919860 10763541 10769337 NC_060945.1 CM021588.2 99.05 True local misassembly 10920808 10921660 10769404 10770256 NC_060945.1 CM021588.2 96.6 True indel: indel (<= 5bp) 10921661 10923888 10770258 10772485 NC_060945.1 CM021588.2 98.11 True local misassembly 10923889 10925938 10772947 10774996 NC_060945.1 CM021588.2 99.37 True indel: stretch of mismatches 10926158 10929864 10775216 10778922 NC_060945.1 CM021588.2 98.81 True local misassembly 10930508 10932318 10779312 10781122 NC_060945.1 CM021588.2 98.56 True indel: indel (<= 5bp) 10932320 10933084 10781123 10781887 NC_060945.1 CM021588.2 98.3 True indel: indel (> 5bp) 10933085 10934268 10781972 10783155 NC_060945.1 CM021588.2 97.07 True fake: not a misassembly (possible transposable element) 10848323 10854231 10783156 10789066 NC_060945.1 CM021588.2 99.2 True fake: not a misassembly (possible transposable element) 10943186 10947670 10789431 10793915 NC_060945.1 CM021588.2 99.49 True local misassembly 10948298 10949232 10793916 10794850 NC_060945.1 CM021588.2 98.89 True local misassembly 10955974 11016657 10794851 10855537 NC_060945.1 CM021588.2 99.36 True relocation, inconsistency = 103169 11119827 11122667 10855538 10858378 NC_060945.1 CM021588.2 99.65 True indel: indel (<= 5bp) 11122668 11126406 10858380 10862118 NC_060945.1 CM021588.2 99.41 True indel: indel (<= 5bp) 11126407 11130145 10862120 10865858 NC_060945.1 CM021588.2 99.36 True indel: indel (<= 5bp) 11130146 11130979 10865860 10866693 NC_060945.1 CM021588.2 99.44 True relocation, inconsistency = -74099 11056881 11143417 10866694 10954594 NC_060945.1 CM021588.2 97.86 True relocation, inconsistency = 54883 11198994 11200109 10955288 10956403 NC_060945.1 CM021588.2 99.1 True relocation, inconsistency = -98897 11101220 11107390 10956411 10962582 NC_060945.1 CM021588.2 99.11 True relocation, inconsistency = 14106 11122668 11126406 10963754 10967492 NC_060945.1 CM021588.2 99.06 True indel: indel (<= 5bp) 11126407 11130145 10967494 10971232 NC_060945.1 CM021588.2 99.36 True indel: indel (<= 5bp) 11130146 11133700 10971234 10974788 NC_060945.1 CM021588.2 99.58 True local misassembly 11133701 11134935 10975131 10976365 NC_060945.1 CM021588.2 99.51 True local misassembly 11135616 11137282 10976366 10978032 NC_060945.1 CM021588.2 99.34 True indel: indel (<= 5bp) 11137423 11140836 10978175 10981588 NC_060945.1 CM021588.2 99.47 True local misassembly 11140837 11144418 10981931 10985512 NC_060945.1 CM021588.2 99.25 True indel: indel (<= 5bp) 11144559 11147972 10985655 10989068 NC_060945.1 CM021588.2 99.38 True local misassembly 11147973 11149684 10989411 10991122 NC_060945.1 CM021588.2 98.83 True indel: indel (<= 5bp) 11149825 11153238 10991265 10994678 NC_060945.1 CM021588.2 99.0 True local misassembly 11153239 11156820 10995020 10998601 NC_060945.1 CM021588.2 99.27 True indel: indel (<= 5bp) 11156961 11160374 10998744 11002157 NC_060945.1 CM021588.2 99.3 True local misassembly 11160375 11163065 11002499 11005189 NC_060945.1 CM021588.2 99.41 True indel: indel (<= 5bp) 11163067 11164347 11005190 11006470 NC_060945.1 CM021588.2 99.3 True indel: indel (<= 5bp) 11164350 11165967 11006471 11008088 NC_060945.1 CM021588.2 98.83 True indel: indel (<= 5bp) 11165969 11167512 11008089 11009632 NC_060945.1 CM021588.2 99.29 True local misassembly 11167513 11168256 11009974 11010717 NC_060945.1 CM021588.2 99.19 True indel: indel (<= 5bp) 11168258 11169628 11010718 11012088 NC_060945.1 CM021588.2 99.2 True local misassembly 11169629 11171094 11012429 11013894 NC_060945.1 CM021588.2 99.11 True indel: indel (<= 5bp) 11171235 11172071 11014037 11014873 NC_060945.1 CM021588.2 99.16 True indel: indel (<= 5bp) 11172073 11174648 11014874 11017449 NC_060945.1 CM021588.2 99.03 True local misassembly 11174649 11175522 11017792 11018665 NC_060945.1 CM021588.2 97.94 True relocation, inconsistency = -17841 11158212 11160374 11019196 11021358 NC_060945.1 CM021588.2 99.31 True local misassembly 11160375 11161468 11021701 11022794 NC_060945.1 CM021588.2 99.42 True relocation, inconsistency = -165199 10996270 11026484 11022795 11053006 NC_060945.1 CM021588.2 99.04 True local misassembly 11026960 11041744 11053143 11067927 NC_060945.1 CM021588.2 99.17 True relocation, inconsistency = 249149 11290894 11303884 11067928 11080917 NC_060945.1 CM021588.2 99.91 True translocation 17492906 17495464 11080918 11083477 NC_060937.1 CM021588.2 97.83 True translocation 11294395 11297612 11083478 11086695 NC_060945.1 CM021588.2 98.2 True local misassembly 11293909 11298401 11086702 11091194 NC_060945.1 CM021588.2 98.24 True translocation 17505858 17507092 11092328 11093562 NC_060937.1 CM021588.2 97.41 True indel: indel (<= 5bp) 17507094 17508449 11093563 11094918 NC_060937.1 CM021588.2 98.38 True translocation 11303875 11994758 11096284 11785722 NC_060945.1 CM021588.2 99.5 True local misassembly 11996553 15326087 11787503 15117546 NC_060945.1 CM021588.2 99.79 True local misassembly 15328025 16313907 15119327 16105730 NC_060945.1 CM021588.2 99.71 True local misassembly 16316417 16610950 16105731 16403609 NC_060945.1 CM021588.2 98.62 True indel: indel (> 5bp) 16611132 17627493 16403838 17420329 NC_060945.1 CM021588.2 99.74 True indel: stretch of mismatches 17627536 19774923 17420372 19567730 NC_060945.1 CM021588.2 99.82 True indel: indel (> 5bp) 19775016 22749547 19567808 22554560 NC_060945.1 CM021588.2 99.33 True local misassembly 22749628 24988808 22554980 24793246 NC_060945.1 CM021588.2 99.82 True indel: indel (> 5bp) 24988868 25006389 24793300 24810806 NC_060945.1 CM021588.2 98.26 True fake: not a misassembly (possible transposable element) 25006429 25007398 24811793 24810824 NC_060945.1 CM021588.2 99.38 True fake: not a misassembly (possible transposable element) 25007471 27254678 24811794 27055351 NC_060945.1 CM021588.2 99.61 True local misassembly 27254446 31690127 27055668 31495965 NC_060945.1 CM021588.2 99.67 True local misassembly 31695756 33231870 31503233 33039303 NC_060945.1 CM021588.2 99.8 True local misassembly 33232313 33909613 33039479 33716753 NC_060945.1 CM021588.2 99.8 True local misassembly 33909844 34013603 33717198 33820956 NC_060945.1 CM021588.2 99.73 True indel: indel (> 5bp) 34013690 34878998 33821107 34686265 NC_060945.1 CM021588.2 99.62 True local misassembly 34879512 38569916 34687603 38381776 NC_060945.1 CM021588.2 99.67 True local misassembly 38570980 38907050 38382839 38718758 NC_060945.1 CM021588.2 99.58 True indel: indel (> 5bp) 38907480 39807955 38719113 39619835 NC_060945.1 CM021588.2 99.66 True local misassembly 39807980 40196456 39621423 40009410 NC_060945.1 CM021588.2 99.35 True local misassembly 40196959 41282732 40009796 41095187 NC_060945.1 CM021588.2 99.47 True local misassembly 41282901 42096815 41095517 41904057 NC_060945.1 CM021588.2 99.08 True indel: indel (> 5bp) 42096843 42750526 41904061 42559606 NC_060945.1 CM021588.2 99.44 True indel: indel (> 5bp) 42750703 42761992 42559846 42570887 NC_060945.1 CM021588.2 96.52 True local misassembly 42763948 43618143 42572836 43428665 NC_060945.1 CM021588.2 98.95 True indel: indel (> 5bp) 43618196 43688425 43428770 43499098 NC_060945.1 CM021588.2 99.6 True local misassembly 43688701 43922551 43499646 43733889 NC_060945.1 CM021588.2 97.87 True local misassembly 43923236 43924190 43735487 43736417 NC_060945.1 CM021588.2 97.28 True indel: indel (> 5bp) 43924282 44375256 43736516 44185445 NC_060945.1 CM021588.2 99.39 True indel: indel (> 5bp) 44375344 44431166 44185547 44242810 NC_060945.1 CM021588.2 96.1 True local misassembly 44432125 44445890 44243741 44257515 NC_060945.1 CM021588.2 98.27 True local misassembly 44446508 44540450 44257943 44352259 NC_060945.1 CM021588.2 99.14 True local misassembly 44540814 44545308 44352443 44356937 NC_060945.1 CM021588.2 99.4 True local misassembly 44545392 44546316 44357178 44358102 NC_060945.1 CM021588.2 98.81 True indel: indel (<= 5bp) 44546317 44547182 44358104 44358969 NC_060945.1 CM021588.2 99.42 True indel: indel (<= 5bp) 44547183 44549139 44358974 44360930 NC_060945.1 CM021588.2 99.44 True local misassembly 44552615 44553154 44362262 44362801 NC_060945.1 CM021588.2 99.44 True local misassembly 44553827 45086177 44363489 44895483 NC_060945.1 CM021588.2 98.83 True indel: indel (> 5bp) 45086475 45090682 44895788 44899975 NC_060945.1 CM021588.2 98.16 True CONTIG CM021588.2 44899981 misassembled 4348 167541 4326 166530 NC_060946.1 CM021589.2 98.76 True relocation, inconsistency = 12852 180394 280340 166531 265962 NC_060946.1 CM021589.2 98.51 True relocation, inconsistency = 42306 322647 324127 265963 267443 NC_060946.1 CM021589.2 96.7 True local misassembly 324449 325154 267444 268149 NC_060946.1 CM021589.2 96.46 True indel: indel (<= 5bp) 325158 326028 268150 269020 NC_060946.1 CM021589.2 98.05 True local misassembly 326220 326767 269021 269568 NC_060946.1 CM021589.2 97.29 True relocation, inconsistency = -42882 283886 334324 269569 319938 NC_060946.1 CM021589.2 98.47 True relocation, inconsistency = -49668 288218 294681 323500 330023 NC_060946.1 CM021589.2 96.14 True local misassembly 295386 297962 330024 332725 NC_060946.1 CM021589.2 95.38 True translocation 219528 360606 332726 473842 NC_060939.1 CM021589.2 99.83 True fake: not a misassembly (possible transposable element) 2160279 2161152 473843 474717 NC_060946.1 CM021589.2 97.33 True fake: not a misassembly (possible transposable element) 361781 362559 474814 475592 NC_060939.1 CM021589.2 98.46 True indel: indel (<= 5bp) 362561 363754 475593 476786 NC_060939.1 CM021589.2 98.49 True indel: indel (<= 5bp) 363756 365728 476787 478759 NC_060939.1 CM021589.2 96.3 True translocation 489222 494024 478760 483562 NC_060946.1 CM021589.2 98.9 True indel: indel (> 5bp) 494094 494886 483563 484355 NC_060946.1 CM021589.2 98.74 True local misassembly 495024 498832 484356 488164 NC_060946.1 CM021589.2 98.98 True local misassembly 498833 501079 488302 490548 NC_060946.1 CM021589.2 98.49 True indel: indel (<= 5bp) 501081 502034 490549 491502 NC_060946.1 CM021589.2 98.95 True local misassembly 502035 503730 491981 493676 NC_060946.1 CM021589.2 98.35 True indel: indel (> 5bp) 503737 505022 493752 495037 NC_060946.1 CM021589.2 97.28 True indel: indel (<= 5bp) 505023 505571 495039 495587 NC_060946.1 CM021589.2 96.17 True local misassembly 508519 526218 496084 513715 NC_060946.1 CM021589.2 97.32 True relocation, inconsistency = 237850 764139 775142 513786 524789 NC_060946.1 CM021589.2 96.56 True translocation 837191 841093 524790 528692 NC_060939.1 CM021589.2 98.71 True translocation 543435 587003 528960 572530 NC_060946.1 CM021589.2 98.4 True indel: stretch of mismatches 587004 606846 572531 592373 NC_060946.1 CM021589.2 98.96 True relocation, inconsistency = 1504485 2111810 2119910 592852 601021 NC_060946.1 CM021589.2 97.44 True relocation, inconsistency = -331660 1788251 1793051 601022 605824 NC_060946.1 CM021589.2 97.44 True relocation, inconsistency = -889990 903062 911815 605825 614509 NC_060946.1 CM021589.2 97.5 True relocation, inconsistency = 1189386 2105547 2107270 618855 620578 NC_060946.1 CM021589.2 97.22 True indel: indel (> 5bp) 2107339 2109244 620579 622484 NC_060946.1 CM021589.2 97.17 True indel: indel (> 5bp) 2109313 2110569 622485 623741 NC_060946.1 CM021589.2 97.99 True relocation, inconsistency = -1472223 638347 680776 623742 666118 NC_060946.1 CM021589.2 98.8 True relocation, inconsistency = 219404 900789 907543 666727 673415 NC_060946.1 CM021589.2 96.82 True translocation 483608 484737 673507 674636 NC_060945.1 CM021589.2 97.26 True translocation 689858 739670 675200 725075 NC_060946.1 CM021589.2 98.99 True relocation, inconsistency = 167340 907024 907775 725089 725840 NC_060946.1 CM021589.2 95.21 True indel: indel (> 5bp) 907776 908311 725909 726444 NC_060946.1 CM021589.2 97.2 True relocation, inconsistency = -167202 741462 809854 726797 795066 NC_060946.1 CM021589.2 98.4 True relocation, inconsistency = 1013520 1823838 1836048 795530 807740 NC_060946.1 CM021589.2 98.12 True relocation, inconsistency = -1013455 822594 843489 807741 828708 NC_060946.1 CM021589.2 98.09 True relocation, inconsistency = 799160 1642650 1646030 828709 832092 NC_060946.1 CM021589.2 96.16 True relocation, inconsistency = 467682 2117142 2122391 835522 840839 NC_060946.1 CM021589.2 97.2 True translocation 862975 867367 845359 849750 NC_060939.1 CM021589.2 98.2 True translocation 864533 874359 849751 859646 NC_060946.1 CM021589.2 98.25 True relocation, inconsistency = 39540 913900 920655 859647 866470 NC_060946.1 CM021589.2 97.06 True relocation, inconsistency = 1163050 2097475 2109727 880240 892294 NC_060946.1 CM021589.2 96.73 True relocation, inconsistency = -854322 1255406 1258087 892295 894910 NC_060946.1 CM021589.2 96.12 True relocation, inconsistency = -348472 909616 925853 894911 911217 NC_060946.1 CM021589.2 96.92 True relocation, inconsistency = -214566 711288 713286 911218 913216 NC_060946.1 CM021589.2 97.15 True indel: indel (<= 5bp) 713288 714085 913217 914014 NC_060946.1 CM021589.2 96.62 True indel: indel (<= 5bp) 714086 714907 914016 914837 NC_060946.1 CM021589.2 97.59 True relocation, inconsistency = 214637 929545 947245 914838 932541 NC_060946.1 CM021589.2 98.96 True indel: indel (<= 5bp) 947245 963352 932542 948650 NC_060946.1 CM021589.2 98.91 True relocation, inconsistency = 272100 1235453 1236333 948651 949531 NC_060946.1 CM021589.2 97.97 True indel: indel (<= 5bp) 1236334 1238982 949534 952182 NC_060946.1 CM021589.2 98.53 True relocation, inconsistency = -271892 967437 992948 952529 978245 NC_060946.1 CM021589.2 96.89 True indel: stretch of mismatches 992949 1005305 978246 990533 NC_060946.1 CM021589.2 97.71 True relocation, inconsistency = 125350 1130656 1131319 990534 991197 NC_060946.1 CM021589.2 97.6 True indel: indel (> 5bp) 1131388 1133356 991198 993166 NC_060946.1 CM021589.2 97.05 True relocation, inconsistency = -125349 1008071 1025602 993230 1010762 NC_060946.1 CM021589.2 99.26 True local misassembly 1038687 1054815 1023848 1040048 NC_060946.1 CM021589.2 98.65 True translocation 822690 828311 1042177 1047936 NC_060939.1 CM021589.2 96.34 True translocation 2122802 2124842 1047937 1049977 NC_060946.1 CM021589.2 98.23 True translocation 898179 903164 1051724 1056711 NC_060939.1 CM021589.2 98.54 True local misassembly 905070 914375 1056712 1066018 NC_060939.1 CM021589.2 98.71 True translocation 1080915 1103701 1066019 1088804 NC_060946.1 CM021589.2 99.32 True relocation, inconsistency = 881864 1985571 1986959 1088810 1090201 NC_060946.1 CM021589.2 97.05 True relocation, inconsistency = 128966 2116187 2123889 1090463 1098233 NC_060946.1 CM021589.2 96.78 True relocation, inconsistency = -1024171 1110693 1118158 1109208 1116677 NC_060946.1 CM021589.2 98.87 True relocation, inconsistency = 13338 1131497 1210250 1116678 1195432 NC_060946.1 CM021589.2 99.63 True local misassembly 1214062 1215654 1195433 1197025 NC_060946.1 CM021589.2 98.55 True relocation, inconsistency = 134251 1357073 1362160 1204193 1209280 NC_060946.1 CM021589.2 98.72 True relocation, inconsistency = -871749 493435 494698 1212304 1213567 NC_060946.1 CM021589.2 96.49 True relocation, inconsistency = 733637 1228336 1310502 1213568 1295803 NC_060946.1 CM021589.2 98.91 True fake: not a misassembly (possible transposable element) 870163 872620 1295804 1298261 NC_060946.1 CM021589.2 97.11 True fake: not a misassembly (possible transposable element) 1313685 1342436 1298917 1327599 NC_060946.1 CM021589.2 99.28 True fake: not a misassembly (possible transposable element) 788910 793911 1327600 1332537 NC_060945.1 CM021589.2 96.56 True fake: not a misassembly (possible transposable element) 1348132 1365920 1333361 1351149 NC_060946.1 CM021589.2 98.4 True indel: stretch of mismatches 1365921 1395815 1351150 1380842 NC_060946.1 CM021589.2 98.38 True local misassembly 1396277 1409144 1380894 1393762 NC_060946.1 CM021589.2 99.21 True indel: stretch of mismatches 1409145 1430237 1393763 1414855 NC_060946.1 CM021589.2 98.58 True fake: not a misassembly (possible transposable element) 620303 621992 1414856 1416544 NC_060939.1 CM021589.2 97.14 True fake: not a misassembly (possible transposable element) 1431927 1442341 1416545 1426961 NC_060946.1 CM021589.2 98.95 True translocation 474600 478631 1429636 1433667 NC_060945.1 CM021589.2 95.16 True translocation 564319 566764 1433668 1435964 NC_060939.1 CM021589.2 98.02 True local misassembly 562942 578164 1435965 1451119 NC_060939.1 CM021589.2 97.14 True translocation 1466638 1477972 1451120 1462453 NC_060946.1 CM021589.2 99.01 True relocation, inconsistency = 75551 1553649 1560267 1462579 1469196 NC_060946.1 CM021589.2 98.03 True relocation, inconsistency = -75552 1484716 1510789 1469197 1495268 NC_060946.1 CM021589.2 99.5 True translocation 801198 801944 1495269 1496015 NC_060945.1 CM021589.2 97.24 True indel: indel (<= 5bp) 801945 802653 1496018 1496726 NC_060945.1 CM021589.2 96.61 True translocation 922769 923876 1496737 1497844 NC_060939.1 CM021589.2 98.01 True indel: indel (> 5bp) 924102 925240 1498003 1499141 NC_060939.1 CM021589.2 97.28 True indel: indel (<= 5bp) 925241 926022 1499143 1499924 NC_060939.1 CM021589.2 96.68 True translocation 1678859 1686070 1500064 1507205 NC_060946.1 CM021589.2 96.7 True fake: not a misassembly (possible transposable element) 790278 794093 1507206 1510888 NC_060945.1 CM021589.2 95.38 True fake: not a misassembly (possible transposable element) 1688412 1702888 1514650 1529127 NC_060946.1 CM021589.2 98.8 True relocation, inconsistency = -179136 1548825 1556063 1554200 1561439 NC_060946.1 CM021589.2 98.84 True translocation 576180 576738 1561440 1561998 NC_060939.1 CM021589.2 96.14 True translocation 1220848 1230195 1565985 1575340 NC_060946.1 CM021589.2 98.85 True relocation, inconsistency = 360727 1590923 1606057 1575341 1590475 NC_060946.1 CM021589.2 98.75 True relocation, inconsistency = 56083 1662141 1663667 1590476 1592003 NC_060946.1 CM021589.2 98.57 True relocation, inconsistency = 460058 2124666 2126064 1592944 1594342 NC_060946.1 CM021589.2 96.09 True relocation, inconsistency = -516141 1609924 1681674 1594343 1666092 NC_060946.1 CM021589.2 99.74 True relocation, inconsistency = -97188 1584487 1586855 1666093 1668461 NC_060946.1 CM021589.2 98.7 True indel: indel (<= 5bp) 1586856 1588536 1668463 1670143 NC_060946.1 CM021589.2 98.87 True indel: indel (> 5bp) 1588605 1594734 1670144 1676273 NC_060946.1 CM021589.2 98.95 True relocation, inconsistency = 97189 1691924 1706629 1676274 1691045 NC_060946.1 CM021589.2 98.55 True indel: stretch of mismatches 1706630 1726769 1691046 1711192 NC_060946.1 CM021589.2 99.27 True indel: stretch of mismatches 1726770 1778529 1711193 1762882 NC_060946.1 CM021589.2 99.3 True fake: not a misassembly (possible transposable element) 1670522 1674331 1766873 1770684 NC_060946.1 CM021589.2 97.57 True fake: not a misassembly (possible transposable element) 1786333 1842586 1770685 1826941 NC_060946.1 CM021589.2 99.25 True local misassembly 1838911 1841223 1826942 1829254 NC_060946.1 CM021589.2 98.56 True local misassembly 1844900 1990923 1829255 1975206 NC_060946.1 CM021589.2 99.52 True translocation 726341 817151 1975676 2066649 NC_060945.1 CM021589.2 96.31 True relocation, inconsistency = 42846 861186 868656 2067838 2075304 NC_060945.1 CM021589.2 98.59 True translocation 704291 705095 2076053 2076925 NC_060939.1 CM021589.2 97.31 True translocation 2073449 2117985 2076926 2121468 NC_060946.1 CM021589.2 98.77 True local misassembly 2111112 2122550 2121469 2132907 NC_060946.1 CM021589.2 97.85 True relocation, inconsistency = 7622 2130173 2157777 2132908 2160650 NC_060946.1 CM021589.2 98.98 True relocation, inconsistency = 13200 2170978 2173895 2160651 2163568 NC_060946.1 CM021589.2 97.45 True indel: indel (> 5bp) 2173965 2175866 2163569 2165470 NC_060946.1 CM021589.2 96.79 True indel: indel (> 5bp) 2175936 2177125 2165471 2166660 NC_060946.1 CM021589.2 97.48 True indel: indel (<= 5bp) 2177126 2177777 2166662 2167313 NC_060946.1 CM021589.2 97.09 True indel: indel (> 5bp) 2177778 2179753 2167382 2169357 NC_060946.1 CM021589.2 97.98 True relocation, inconsistency = 15106 2195316 2206870 2169814 2181368 NC_060946.1 CM021589.2 98.83 True relocation, inconsistency = -12526 2194345 2406571 2181369 2392751 NC_060946.1 CM021589.2 98.69 True local misassembly 2402293 2402996 2393462 2394165 NC_060946.1 CM021589.2 96.59 True local misassembly 2406551 2418432 2394939 2406655 NC_060946.1 CM021589.2 97.87 True local misassembly 2419362 2443678 2406656 2430987 NC_060946.1 CM021589.2 97.75 True local misassembly 2441281 2472749 2430988 2462362 NC_060946.1 CM021589.2 98.02 True local misassembly 2470301 2470869 2463141 2463709 NC_060946.1 CM021589.2 99.3 True local misassembly 2471981 2472934 2465331 2466284 NC_060946.1 CM021589.2 99.79 True local misassembly 2473827 2474608 2467167 2467948 NC_060946.1 CM021589.2 99.87 True indel: indel (> 5bp) 2474785 2477094 2468140 2470449 NC_060946.1 CM021589.2 99.87 True local misassembly 2473453 2474556 2470460 2471563 NC_060946.1 CM021589.2 99.46 True local misassembly 2478237 2497270 2472387 2491400 NC_060946.1 CM021589.2 98.52 True indel: indel (<= 5bp) 2497394 2511219 2491525 2505304 NC_060946.1 CM021589.2 99.0 True local misassembly 2512638 2526262 2506654 2520278 NC_060946.1 CM021589.2 98.82 True local misassembly 2526837 2652328 2520780 2646031 NC_060946.1 CM021589.2 99.01 True indel: stretch of mismatches 2652329 2663587 2646032 2657295 NC_060946.1 CM021589.2 98.9 True relocation, inconsistency = 25918 2689506 2698039 2657296 2665833 NC_060946.1 CM021589.2 98.57 True relocation, inconsistency = -25918 2672122 2702358 2665834 2696068 NC_060946.1 CM021589.2 99.53 True fake: not a misassembly (possible transposable element) 1279014 1279962 2696146 2697100 NC_060939.1 CM021589.2 96.99 True fake: not a misassembly (possible transposable element) 2703386 2716759 2697101 2710392 NC_060946.1 CM021589.2 98.08 True translocation 1125239 1126740 2710393 2711886 NC_060937.1 CM021589.2 97.33 True relocation, inconsistency = -825100 301767 303169 2712013 2713416 NC_060937.1 CM021589.2 98.51 True translocation 2719751 2748950 2713417 2742621 NC_060946.1 CM021589.2 99.51 True indel: indel (> 5bp) 2749246 2849202 2742910 2842364 NC_060946.1 CM021589.2 97.99 True indel: indel (<= 5bp) 2849457 2854096 2842623 2847267 NC_060946.1 CM021589.2 98.15 True indel: stretch of mismatches 2854284 2887170 2847455 2880340 NC_060946.1 CM021589.2 99.56 True local misassembly 2888222 2910002 2881388 2903137 NC_060946.1 CM021589.2 98.58 True local misassembly 2911764 2955755 2904935 2948907 NC_060946.1 CM021589.2 99.17 True local misassembly 2956900 2973650 2950047 2966808 NC_060946.1 CM021589.2 99.18 True fake: not a misassembly (possible transposable element) 93588160 93593802 2966809 2972431 NC_060927.1 CM021589.2 97.04 True fake: not a misassembly (possible transposable element) 2973263 2974046 2972432 2973215 NC_060946.1 CM021589.2 97.51 True local misassembly 2980044 2991115 2973216 2984319 NC_060946.1 CM021589.2 98.48 True local misassembly 2996788 3009606 2989995 3002813 NC_060946.1 CM021589.2 98.54 True indel: stretch of mismatches 3009977 3022158 3003184 3015376 NC_060946.1 CM021589.2 99.0 True translocation 509314 511424 3015960 3018070 NC_060937.1 CM021589.2 99.72 True relocation, inconsistency = 252220 763832 765122 3018258 3019548 NC_060937.1 CM021589.2 99.23 True translocation 1753433 1759357 3020693 3026601 NC_060945.1 CM021589.2 96.45 True translocation 1006197 1007009 3028431 3029248 NC_060937.1 CM021589.2 97.31 True translocation 3038503 3124921 3031606 3118034 NC_060946.1 CM021589.2 99.7 True translocation 756109 761126 3118035 3122962 NC_060937.1 CM021589.2 95.33 True translocation 95018591 95019091 3123069 3123569 NC_060927.1 CM021589.2 98.0 True translocation 3131007 3139696 3124135 3132824 NC_060946.1 CM021589.2 98.34 True translocation 1115552 1117798 3134717 3136963 NC_060937.1 CM021589.2 97.46 True local misassembly 1118450 1119512 3137610 3138672 NC_060937.1 CM021589.2 97.18 True local misassembly 1119891 1120967 3138673 3139749 NC_060937.1 CM021589.2 97.42 True translocation 3146848 3159440 3139750 3152349 NC_060946.1 CM021589.2 98.91 True local misassembly 3160118 3185035 3152772 3177608 NC_060946.1 CM021589.2 98.82 True fake: not a misassembly (possible transposable element) 1206645 1208622 3185086 3187073 NC_060937.1 CM021589.2 97.78 True fake: not a misassembly (possible transposable element) 3194658 3199880 3187074 3192291 NC_060946.1 CM021589.2 98.94 True indel: stretch of mismatches 3199881 3206971 3192292 3199382 NC_060946.1 CM021589.2 99.22 True local misassembly 3211034 3233147 3203445 3225515 NC_060946.1 CM021589.2 99.04 True indel: stretch of mismatches 3233148 3252808 3225516 3245178 NC_060946.1 CM021589.2 99.47 True local misassembly 3257893 3268080 3250100 3260117 NC_060946.1 CM021589.2 97.75 True local misassembly 3268766 3293641 3260803 3285676 NC_060946.1 CM021589.2 99.26 True indel: stretch of mismatches 3293642 3369111 3285677 3361155 NC_060946.1 CM021589.2 98.41 True local misassembly 3370673 3383472 3362717 3375522 NC_060946.1 CM021589.2 98.96 True indel: stretch of mismatches 3383473 3390373 3375523 3382424 NC_060946.1 CM021589.2 98.65 True relocation, inconsistency = -7141 3383768 3387308 3382960 3386500 NC_060946.1 CM021589.2 98.53 True translocation 1402995 1408501 3389799 3395319 NC_060939.1 CM021589.2 97.38 True translocation 95057728 95058562 3396192 3397026 NC_060927.1 CM021589.2 97.96 True translocation 3405298 3410522 3403745 3408964 NC_060946.1 CM021589.2 98.35 True local misassembly 3418343 3435471 3410394 3427491 NC_060946.1 CM021589.2 98.99 True local misassembly 3444526 3450760 3436482 3442721 NC_060946.1 CM021589.2 99.0 True indel: stretch of mismatches 3450761 3464067 3442722 3456022 NC_060946.1 CM021589.2 98.8 True indel: indel (> 5bp) 3464145 3471318 3456142 3463311 NC_060946.1 CM021589.2 98.15 True local misassembly 3472590 3477320 3464317 3469048 NC_060946.1 CM021589.2 98.86 True local misassembly 3474858 3475418 3469184 3469744 NC_060946.1 CM021589.2 96.08 True local misassembly 3476649 3477446 3470969 3471766 NC_060946.1 CM021589.2 95.86 True indel: indel (> 5bp) 3477512 3479236 3471875 3473599 NC_060946.1 CM021589.2 97.91 True local misassembly 3482850 3486145 3474355 3477650 NC_060946.1 CM021589.2 99.12 True local misassembly 3489314 3490081 3478088 3478855 NC_060946.1 CM021589.2 99.74 True indel: indel (> 5bp) 3490124 3490726 3478856 3479458 NC_060946.1 CM021589.2 99.83 True local misassembly 3490853 3492088 3479459 3480694 NC_060946.1 CM021589.2 97.9 True indel: indel (> 5bp) 3492131 3494345 3480695 3482909 NC_060946.1 CM021589.2 99.64 True indel: indel (<= 5bp) 3494346 3495346 3482911 3483911 NC_060946.1 CM021589.2 98.5 True indel: indel (<= 5bp) 3495347 3495898 3483915 3484466 NC_060946.1 CM021589.2 98.55 True local misassembly 3493755 3912427 3484695 3904462 NC_060946.1 CM021589.2 99.33 True relocation, inconsistency = 179452 4091880 4141338 3904463 3953234 NC_060946.1 CM021589.2 96.77 True relocation, inconsistency = -249537 3891802 3957528 3953235 4018615 NC_060946.1 CM021589.2 99.22 True indel: indel (<= 5bp) 3957765 3963254 4018849 4024300 NC_060946.1 CM021589.2 98.0 True indel: stretch of mismatches 3963533 4120278 4024579 4180897 NC_060946.1 CM021589.2 99.45 True local misassembly 4119985 4794306 4180898 4855167 NC_060946.1 CM021589.2 99.53 True translocation 9239925 9269690 4855168 4885024 NC_060937.1 CM021589.2 98.37 True translocation 4805351 5531328 4885025 5610672 NC_060946.1 CM021589.2 99.88 True translocation 2763710 2781468 5610673 5628317 NC_060938.1 CM021589.2 98.98 True translocation 5549267 5711902 5628554 5790753 NC_060946.1 CM021589.2 99.09 True indel: indel (> 5bp) 5712038 5969837 5790869 6048661 NC_060946.1 CM021589.2 99.86 True indel: stretch of mismatches 5969898 6786718 6048722 6865172 NC_060946.1 CM021589.2 99.65 True relocation, inconsistency = -48367 6742914 6743597 6869735 6870417 NC_060946.1 CM021589.2 98.43 True local misassembly 6738763 6742112 6870418 6873765 NC_060946.1 CM021589.2 98.46 True local misassembly 6737275 6947769 6873766 7084301 NC_060946.1 CM021589.2 98.45 True local misassembly 6945348 6946335 7084302 7085289 NC_060946.1 CM021589.2 98.44 True relocation, inconsistency = 115503 7091839 7119813 7115290 7143349 NC_060946.1 CM021589.2 98.98 True relocation, inconsistency = -7176 7112638 7142907 7143350 7173589 NC_060946.1 CM021589.2 99.31 True local misassembly 7144282 7204694 7173590 7234037 NC_060946.1 CM021589.2 98.66 True local misassembly 7209577 7235700 7234038 7260090 NC_060946.1 CM021589.2 98.65 True relocation, inconsistency = -27543 7208158 7252789 7260091 7304566 NC_060946.1 CM021589.2 98.76 True relocation, inconsistency = -49203 7203587 7205114 7304567 7306094 NC_060946.1 CM021589.2 97.49 True relocation, inconsistency = 30936 7236261 7236921 7306305 7306965 NC_060946.1 CM021589.2 99.7 True local misassembly 7233283 7236055 7307240 7310082 NC_060946.1 CM021589.2 95.22 True relocation, inconsistency = -25819 7210237 7211075 7310083 7310921 NC_060946.1 CM021589.2 97.36 True local misassembly 7212079 7212682 7311260 7311863 NC_060946.1 CM021589.2 99.34 True local misassembly 7214447 7215347 7313473 7314373 NC_060946.1 CM021589.2 99.56 True local misassembly 7216690 7217664 7315362 7316336 NC_060946.1 CM021589.2 97.23 True relocation, inconsistency = 26636 7247942 7249186 7319978 7321222 NC_060946.1 CM021589.2 98.71 True local misassembly 7250032 7264645 7326023 7340596 NC_060946.1 CM021589.2 98.4 True local misassembly 7267867 7329348 7340597 7402062 NC_060946.1 CM021589.2 98.5 True relocation, inconsistency = 50857 7380206 7567564 7402063 7588816 NC_060946.1 CM021589.2 98.94 True indel: indel (<= 5bp) 7567734 7573742 7588983 7594991 NC_060946.1 CM021589.2 99.88 True indel: indel (<= 5bp) 7573901 7859476 7595147 7880651 NC_060946.1 CM021589.2 99.81 True local misassembly 7864034 8577562 7880652 8595637 NC_060946.1 CM021589.2 99.28 True relocation, inconsistency = 85003 8679553 8719317 8612625 8652386 NC_060946.1 CM021589.2 99.09 True relocation, inconsistency = -58244 8661074 8713429 8652387 8704739 NC_060946.1 CM021589.2 99.31 True relocation, inconsistency = -65101 8648329 8718507 8704740 8774916 NC_060946.1 CM021589.2 99.18 True relocation, inconsistency = -47963 8670545 8719317 8774917 8823683 NC_060946.1 CM021589.2 98.93 True relocation, inconsistency = -58244 8661074 8718507 8823684 8881115 NC_060946.1 CM021589.2 99.29 True relocation, inconsistency = -41110 8677398 8718507 8881116 8922230 NC_060946.1 CM021589.2 98.74 True local misassembly 8721932 8723702 8922231 8924003 NC_060946.1 CM021589.2 99.03 True local misassembly 8720278 8757742 8924004 8961470 NC_060946.1 CM021589.2 97.76 True local misassembly 8754320 8765059 8961471 8972211 NC_060946.1 CM021589.2 98.81 True local misassembly 8771909 9369518 8972212 9570003 NC_060946.1 CM021589.2 99.83 True local misassembly 9369508 9579052 9571425 9780967 NC_060946.1 CM021589.2 99.96 True local misassembly 9578875 9946509 9781607 10149285 NC_060946.1 CM021589.2 99.47 True local misassembly 9949935 10674097 10149286 10873098 NC_060946.1 CM021589.2 99.42 True indel: indel (<= 5bp) 10674369 10735051 10873369 10934367 NC_060946.1 CM021589.2 99.14 True fake: not a misassembly (possible transposable element) 10828293 10828923 10934978 10935608 NC_060946.1 CM021589.2 99.05 True fake: not a misassembly (possible transposable element) 10739375 10739890 10937712 10938227 NC_060946.1 CM021589.2 99.22 True fake: not a misassembly (possible transposable element) 10832078 10833286 10939722 10940940 NC_060946.1 CM021589.2 95.4 True fake: not a misassembly (possible transposable element) 10760606 10761212 10960628 10961239 NC_060946.1 CM021589.2 95.79 True fake: not a misassembly (possible transposable element) 10868674 10869853 10974993 10976177 NC_060946.1 CM021589.2 95.83 True fake: not a misassembly (possible transposable element) 10781324 10782898 10981233 10982782 NC_060946.1 CM021589.2 95.09 True local misassembly 10787811 10793876 10988510 10994530 NC_060946.1 CM021589.2 95.31 True fake: not a misassembly (possible transposable element) 10889879 10890478 10995990 10996589 NC_060946.1 CM021589.2 97.5 True fake: not a misassembly (possible transposable element) 10808622 10809649 11009013 11010020 NC_060946.1 CM021589.2 95.38 True relocation, inconsistency = 95288 10904938 10905613 11010021 11010696 NC_060946.1 CM021589.2 100.0 True local misassembly 10907748 10908321 11012831 11013404 NC_060946.1 CM021589.2 98.43 True local misassembly 10909803 10910645 11015171 11016013 NC_060946.1 CM021589.2 99.41 True local misassembly 10912746 10913297 11017009 11017560 NC_060946.1 CM021589.2 100.0 True indel: stretch of mismatches 10913547 10914150 11017810 11018413 NC_060946.1 CM021589.2 99.67 True indel: indel (<= 5bp) 10914156 10914787 11018414 11019045 NC_060946.1 CM021589.2 99.84 True indel: indel (<= 5bp) 10914793 10915905 11019046 11020158 NC_060946.1 CM021589.2 99.91 True local misassembly 10916968 10917750 11020791 11021573 NC_060946.1 CM021589.2 99.87 True indel: indel (> 5bp) 10917751 10918476 11021584 11022309 NC_060946.1 CM021589.2 100.0 True indel: indel (> 5bp) 10918901 10919635 11022744 11023478 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 10919732 10920261 11023580 11024109 NC_060946.1 CM021589.2 100.0 True local misassembly 10921252 10922643 11025095 11026486 NC_060946.1 CM021589.2 100.0 True indel: indel (> 5bp) 10922644 10925251 11026497 11029104 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 10925257 10926369 11029105 11030217 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 10926370 10928025 11030223 11031878 NC_060946.1 CM021589.2 99.94 True indel: indel (> 5bp) 10928527 10930755 11032370 11034598 NC_060946.1 CM021589.2 100.0 True indel: indel (> 5bp) 10931233 10931942 11035091 11035800 NC_060946.1 CM021589.2 100.0 True fake: not a misassembly (possible transposable element) 10833335 10833897 11036040 11036602 NC_060946.1 CM021589.2 99.11 True fake: not a misassembly (possible transposable element) 10938925 10994040 11040868 11095528 NC_060946.1 CM021589.2 98.67 True translocation 7771772 7772903 11107730 11108861 NC_060945.1 CM021589.2 98.32 True local misassembly 7773578 7774087 11108862 11109371 NC_060945.1 CM021589.2 98.67 True translocation 10993021 11223732 11109372 11340179 NC_060946.1 CM021589.2 99.66 True indel: indel (> 5bp) 11223867 11405336 11340252 11521659 NC_060946.1 CM021589.2 99.74 True local misassembly 11406284 11408457 11522868 11525041 NC_060946.1 CM021589.2 99.68 True indel: indel (<= 5bp) 11408458 11409096 11525044 11525682 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 11409097 11411007 11525684 11527594 NC_060946.1 CM021589.2 99.74 True local misassembly 11411512 11419337 11528103 11535928 NC_060946.1 CM021589.2 99.8 True indel: indel (<= 5bp) 11419339 11420900 11535929 11537490 NC_060946.1 CM021589.2 99.87 True indel: indel (<= 5bp) 11420901 11440944 11537492 11557535 NC_060946.1 CM021589.2 99.89 True indel: indel (<= 5bp) 11440945 11441476 11557540 11558071 NC_060946.1 CM021589.2 99.62 True indel: indel (<= 5bp) 11441480 11447692 11558072 11564284 NC_060946.1 CM021589.2 100.0 True indel: indel (> 5bp) 11447693 11457664 11564295 11574266 NC_060946.1 CM021589.2 99.94 True indel: indel (> 5bp) 11457828 11460994 11574370 11577536 NC_060946.1 CM021589.2 99.91 True indel: indel (<= 5bp) 11460999 11463950 11577537 11580488 NC_060946.1 CM021589.2 99.93 True indel: indel (<= 5bp) 11463952 11467489 11580489 11584026 NC_060946.1 CM021589.2 99.89 True indel: indel (<= 5bp) 11467492 11479173 11584027 11595708 NC_060946.1 CM021589.2 99.78 True indel: indel (<= 5bp) 11479178 11484159 11595709 11600690 NC_060946.1 CM021589.2 99.88 True indel: indel (<= 5bp) 11484161 11486958 11600691 11603488 NC_060946.1 CM021589.2 99.89 True indel: indel (> 5bp) 11486959 11487575 11603500 11604116 NC_060946.1 CM021589.2 99.84 True indel: stretch of mismatches 11487688 11488197 11604229 11604738 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 11488198 11492345 11604740 11608887 NC_060946.1 CM021589.2 99.93 True indel: indel (<= 5bp) 11492775 11496293 11609318 11612836 NC_060946.1 CM021589.2 99.86 True indel: indel (<= 5bp) 11496294 11501374 11612838 11617918 NC_060946.1 CM021589.2 99.86 True indel: indel (<= 5bp) 11501375 11503966 11617920 11620511 NC_060946.1 CM021589.2 99.81 True indel: indel (<= 5bp) 11503967 11515491 11620513 11632037 NC_060946.1 CM021589.2 99.82 True indel: indel (<= 5bp) 11515493 11525308 11632038 11641853 NC_060946.1 CM021589.2 99.91 True indel: indel (<= 5bp) 11525310 11526359 11641854 11642903 NC_060946.1 CM021589.2 99.9 True indel: indel (<= 5bp) 11526361 11526866 11642904 11643409 NC_060946.1 CM021589.2 99.8 True indel: indel (> 5bp) 11527406 11532758 11643905 11649257 NC_060946.1 CM021589.2 99.89 True indel: indel (> 5bp) 11532759 11539080 11649303 11655624 NC_060946.1 CM021589.2 99.86 True indel: indel (<= 5bp) 11539081 11547890 11655629 11664438 NC_060946.1 CM021589.2 99.86 True indel: indel (<= 5bp) 11547891 11554130 11664440 11670679 NC_060946.1 CM021589.2 99.87 True indel: indel (<= 5bp) 11554131 11555201 11670681 11671751 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 11555202 11561730 11671753 11678281 NC_060946.1 CM021589.2 99.82 True indel: indel (<= 5bp) 11561731 11563817 11678283 11680369 NC_060946.1 CM021589.2 99.81 True indel: indel (<= 5bp) 11563821 11566967 11680370 11683516 NC_060946.1 CM021589.2 99.84 True indel: indel (<= 5bp) 11566972 11567821 11683517 11684366 NC_060946.1 CM021589.2 99.76 True indel: indel (<= 5bp) 11567824 11578575 11684367 11695118 NC_060946.1 CM021589.2 99.76 True indel: indel (<= 5bp) 11578785 11579367 11695332 11695914 NC_060946.1 CM021589.2 100.0 True indel: indel (> 5bp) 11579526 11580198 11696053 11696725 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 11580204 11581088 11696726 11697610 NC_060946.1 CM021589.2 99.89 True indel: indel (<= 5bp) 11581089 11581636 11697616 11698163 NC_060946.1 CM021589.2 99.82 True indel: indel (> 5bp) 11581647 11582441 11698164 11698958 NC_060946.1 CM021589.2 99.87 True indel: indel (<= 5bp) 11582442 11586185 11698964 11702707 NC_060946.1 CM021589.2 99.84 True indel: indel (<= 5bp) 11586186 11587065 11702713 11703592 NC_060946.1 CM021589.2 99.89 True indel: indel (> 5bp) 11587066 11589529 11703644 11706107 NC_060946.1 CM021589.2 99.8 True indel: indel (<= 5bp) 11589535 11590426 11706108 11706999 NC_060946.1 CM021589.2 99.66 True indel: indel (> 5bp) 11590447 11591961 11707000 11708514 NC_060946.1 CM021589.2 99.93 True indel: indel (<= 5bp) 11591967 11592601 11708515 11709149 NC_060946.1 CM021589.2 99.53 True relocation, inconsistency = 8772 11601540 11602550 11709316 11710326 NC_060946.1 CM021589.2 99.7 True local misassembly 11603632 11606602 11710786 11713756 NC_060946.1 CM021589.2 99.63 True indel: indel (<= 5bp) 11606608 11608033 11713757 11715182 NC_060946.1 CM021589.2 99.79 True indel: indel (<= 5bp) 11608034 11609086 11715188 11716240 NC_060946.1 CM021589.2 99.81 True indel: indel (> 5bp) 11609518 11619837 11716706 11727021 NC_060946.1 CM021589.2 99.49 True indel: stretch of mismatches 11619914 11705261 11727098 11812604 NC_060946.1 CM021589.2 99.15 True local misassembly 11705003 11911700 11813699 12020234 NC_060946.1 CM021589.2 99.49 True translocation 9107462 9131841 12020235 12044990 NC_060938.1 CM021589.2 95.79 True translocation 11935388 12309124 12044991 12418780 NC_060946.1 CM021589.2 99.35 True relocation, inconsistency = 8208 12317333 12768507 12418781 12869817 NC_060946.1 CM021589.2 99.78 True local misassembly 12770046 12770778 12869818 12870550 NC_060946.1 CM021589.2 99.75 True local misassembly 12771292 12801365 12870551 12900624 NC_060946.1 CM021589.2 99.66 True indel: indel (<= 5bp) 12801863 12818556 12901121 12917814 NC_060946.1 CM021589.2 99.51 True indel: indel (<= 5bp) 12818557 12821280 12917817 12920540 NC_060946.1 CM021589.2 99.19 True indel: indel (<= 5bp) 12821281 12826577 12920543 12925839 NC_060946.1 CM021589.2 99.57 True indel: indel (<= 5bp) 12826579 12849564 12925840 12948825 NC_060946.1 CM021589.2 99.43 True indel: indel (<= 5bp) 12849567 12861100 12948826 12960359 NC_060946.1 CM021589.2 98.74 True indel: stretch of mismatches 12861101 12964059 12960360 13063324 NC_060946.1 CM021589.2 99.29 True relocation, inconsistency = 2032632 14996694 14998039 13063327 13064672 NC_060946.1 CM021589.2 96.14 True indel: indel (<= 5bp) 14998041 15000783 13064673 13067415 NC_060946.1 CM021589.2 97.41 True indel: indel (<= 5bp) 15000784 15001730 13067418 13068364 NC_060946.1 CM021589.2 96.3 True relocation, inconsistency = -2032637 12969525 12983700 13068796 13082971 NC_060946.1 CM021589.2 98.35 True indel: stretch of mismatches 12983701 13107117 13082972 13206385 NC_060946.1 CM021589.2 99.85 True relocation, inconsistency = 1147635 14262960 14268158 13214593 13219791 NC_060946.1 CM021589.2 99.03 True relocation, inconsistency = -1147635 13120524 13272412 13219792 13371680 NC_060946.1 CM021589.2 99.96 True relocation, inconsistency = 2371521 15643934 15645673 13371681 13373420 NC_060946.1 CM021589.2 98.91 True relocation, inconsistency = -101252 15544422 15551001 13373421 13380002 NC_060946.1 CM021589.2 98.88 True relocation, inconsistency = -8182 15542820 15551924 13380003 13389111 NC_060946.1 CM021589.2 98.84 True relocation, inconsistency = 18751 15570676 15576292 13389112 13394730 NC_060946.1 CM021589.2 98.97 True relocation, inconsistency = -742772 14845309 14851101 13406519 13412311 NC_060946.1 CM021589.2 99.26 True relocation, inconsistency = -1965690 12912269 12914584 13439169 13441484 NC_060946.1 CM021589.2 98.96 True relocation, inconsistency = 2728740 15698014 15705597 13496174 13503758 NC_060946.1 CM021589.2 98.8 True relocation, inconsistency = -2038448 13690222 13700727 13526831 13537336 NC_060946.1 CM021589.2 99.79 True relocation, inconsistency = -644697 13056031 13056646 13537337 13537952 NC_060946.1 CM021589.2 98.24 True relocation, inconsistency = -47740 13054154 13059071 13583200 13588117 NC_060946.1 CM021589.2 98.39 True relocation, inconsistency = 430259 13489331 13566225 13588118 13665012 NC_060946.1 CM021589.2 99.96 True relocation, inconsistency = -262196 13427576 13438203 13788559 13799187 NC_060946.1 CM021589.2 99.53 True fake: not a misassembly (possible transposable element) 15459811 15460665 13799188 13800042 NC_060946.1 CM021589.2 98.67 True fake: not a misassembly (possible transposable element) 13462904 13470790 13822524 13830409 NC_060946.1 CM021589.2 99.64 True relocation, inconsistency = -437076 13043101 13043701 13839796 13840396 NC_060946.1 CM021589.2 98.75 True relocation, inconsistency = 697889 13741591 13780233 13840397 13879038 NC_060946.1 CM021589.2 99.88 True local misassembly 13796142 13806558 13894947 13905362 NC_060946.1 CM021589.2 99.33 True relocation, inconsistency = 1742493 15549052 15552723 13905363 13909035 NC_060946.1 CM021589.2 98.55 True relocation, inconsistency = 32385 15585109 15594677 13909036 13918609 NC_060946.1 CM021589.2 98.57 True relocation, inconsistency = -8179 15586499 15599455 13918610 13931570 NC_060946.1 CM021589.2 98.53 True relocation, inconsistency = -2704861 12894595 12897070 13931571 13934047 NC_060946.1 CM021589.2 98.08 True translocation 10099133 10102795 13934745 13938414 NC_060938.1 CM021589.2 97.33 True translocation 13839609 13871238 13938415 13970045 NC_060946.1 CM021589.2 99.81 True relocation, inconsistency = 808100 14679339 14680990 13970046 13971697 NC_060946.1 CM021589.2 98.96 True translocation 10130572 10133073 13996037 13998538 NC_060938.1 CM021589.2 98.02 True relocation, inconsistency = 2315900 12448974 12459442 13998539 14009007 NC_060938.1 CM021589.2 98.92 True relocation, inconsistency = -2129981 10329462 10333462 14009008 14013008 NC_060938.1 CM021589.2 98.2 True translocation 15584750 15605102 14013009 14033366 NC_060946.1 CM021589.2 98.57 True local misassembly 15601012 15603400 14033367 14035744 NC_060946.1 CM021589.2 98.55 True relocation, inconsistency = -1666459 13936968 14146218 14035771 14245018 NC_060946.1 CM021589.2 99.94 True relocation, inconsistency = -100928 14045889 14051343 14245617 14251070 NC_060946.1 CM021589.2 98.09 True relocation, inconsistency = 100928 14152272 14165795 14251071 14264594 NC_060946.1 CM021589.2 99.11 True fake: not a misassembly (possible transposable element) 15009936 15014643 14264595 14269302 NC_060946.1 CM021589.2 97.87 True fake: not a misassembly (possible transposable element) 14172519 14200367 14271323 14299170 NC_060946.1 CM021589.2 99.75 True relocation, inconsistency = 1346296 15546664 15557377 14299171 14309888 NC_060946.1 CM021589.2 98.47 True relocation, inconsistency = 14660 15572038 15588193 14309889 14326047 NC_060946.1 CM021589.2 98.45 True relocation, inconsistency = -1360948 14227246 14408219 14326048 14507016 NC_060946.1 CM021589.2 99.91 True relocation, inconsistency = 1170004 15589227 15594307 14518020 14523103 NC_060946.1 CM021589.2 98.85 True relocation, inconsistency = -20450 15573858 15595559 14523104 14544804 NC_060946.1 CM021589.2 98.87 True relocation, inconsistency = -21814 15573858 15580383 14544917 14551442 NC_060946.1 CM021589.2 99.25 True relocation, inconsistency = 9539 15590227 15602036 14551747 14563557 NC_060946.1 CM021589.2 98.98 True relocation, inconsistency = -51475 15550562 15555462 14563558 14568462 NC_060946.1 CM021589.2 98.8 True relocation, inconsistency = 21481 15576944 15581034 14568463 14572556 NC_060946.1 CM021589.2 98.64 True local misassembly 15582397 15603519 14572557 14593689 NC_060946.1 CM021589.2 98.54 True relocation, inconsistency = -35453 15568067 15577047 14593690 14602672 NC_060946.1 CM021589.2 98.44 True local misassembly 15572955 15577048 14602673 14606762 NC_060946.1 CM021589.2 98.49 True relocation, inconsistency = -1069080 14508232 14879744 14607026 14978535 NC_060946.1 CM021589.2 99.96 True fake: not a misassembly (possible transposable element) 14999668 15004869 14978536 14983743 NC_060946.1 CM021589.2 97.26 True fake: not a misassembly (possible transposable element) 14890173 15051071 14988964 15149857 NC_060946.1 CM021589.2 99.76 True relocation, inconsistency = 433243 15484315 15485400 15149858 15150943 NC_060946.1 CM021589.2 97.63 True relocation, inconsistency = -393691 15095543 15112832 15154777 15171734 NC_060946.1 CM021589.2 96.65 True relocation, inconsistency = -39886 15072947 15074123 15171735 15172911 NC_060946.1 CM021589.2 98.93 True local misassembly 15070033 15077315 15172912 15180195 NC_060946.1 CM021589.2 98.86 True local misassembly 15081404 15133645 15180196 15232445 NC_060946.1 CM021589.2 99.43 True local misassembly 15140419 15166986 15239219 15265788 NC_060946.1 CM021589.2 99.45 True relocation, inconsistency = -27277 15149849 15151569 15275928 15277648 NC_060946.1 CM021589.2 99.07 True indel: indel (<= 5bp) 15151570 15152640 15277650 15278720 NC_060946.1 CM021589.2 99.32 True relocation, inconsistency = 27275 15179916 15187010 15278721 15285816 NC_060946.1 CM021589.2 99.31 True fake: not a misassembly (possible transposable element) 15450247 15455321 15287721 15292795 NC_060946.1 CM021589.2 98.8 True fake: not a misassembly (possible transposable element) 15196023 15211382 15294831 15310190 NC_060946.1 CM021589.2 99.11 True indel: stretch of mismatches 15211383 15246971 15310191 15345786 NC_060946.1 CM021589.2 99.26 True local misassembly 15242643 15245822 15345888 15349067 NC_060946.1 CM021589.2 99.4 True relocation, inconsistency = 10908 15258182 15266511 15350519 15358848 NC_060946.1 CM021589.2 99.35 True local misassembly 15260034 15266511 15358849 15365326 NC_060946.1 CM021589.2 99.51 True local misassembly 15268606 15280155 15367429 15378978 NC_060946.1 CM021589.2 99.53 True local misassembly 15281601 15370671 15380424 15469485 NC_060946.1 CM021589.2 99.67 True indel: stretch of mismatches 15370672 15405656 15469486 15504471 NC_060946.1 CM021589.2 99.29 True local misassembly 15398839 15410287 15504472 15515922 NC_060946.1 CM021589.2 98.49 True fake: not a misassembly (possible transposable element) 15067482 15073644 15515923 15522086 NC_060946.1 CM021589.2 98.77 True fake: not a misassembly (possible transposable element) 15423651 15431150 15522467 15529967 NC_060946.1 CM021589.2 99.1 True relocation, inconsistency = 23188 15454339 15494367 15529968 15569885 NC_060946.1 CM021589.2 98.16 True relocation, inconsistency = -23299 15471069 15516494 15569886 15615275 NC_060946.1 CM021589.2 99.34 True indel: stretch of mismatches 15516495 15534545 15615276 15633326 NC_060946.1 CM021589.2 99.55 True indel: stretch of mismatches 15534546 15548291 15633327 15647073 NC_060946.1 CM021589.2 99.41 True indel: stretch of mismatches 15548766 15556408 15647548 15655191 NC_060946.1 CM021589.2 99.45 True indel: stretch of mismatches 15556458 15563409 15655241 15662192 NC_060946.1 CM021589.2 99.04 True relocation, inconsistency = -557732 15012214 15016351 15668729 15672867 NC_060946.1 CM021589.2 98.52 True relocation, inconsistency = 528070 15544422 15552364 15672868 15680812 NC_060946.1 CM021589.2 98.99 True relocation, inconsistency = 26934 15579299 15603400 15680813 15704913 NC_060946.1 CM021589.2 98.87 True local misassembly 15606128 15619795 15704914 15718581 NC_060946.1 CM021589.2 99.25 True relocation, inconsistency = 43638 15664841 15666499 15719989 15721647 NC_060946.1 CM021589.2 98.81 True relocation, inconsistency = 12276 15678776 15690044 15721648 15732917 NC_060946.1 CM021589.2 98.58 True relocation, inconsistency = -55917 15634128 15645543 15732918 15744335 NC_060946.1 CM021589.2 99.14 True indel: stretch of mismatches 15645544 15685000 15744336 15783791 NC_060946.1 CM021589.2 99.24 True indel: stretch of mismatches 15685001 15699928 15783792 15798719 NC_060946.1 CM021589.2 99.31 True relocation, inconsistency = -117966 15581963 15589425 15798720 15806185 NC_060946.1 CM021589.2 97.93 True relocation, inconsistency = 117968 15707554 15770204 15806346 15869025 NC_060946.1 CM021589.2 99.77 True local misassembly 15772939 16531108 15869026 16636121 NC_060946.1 CM021589.2 98.49 True local misassembly 16531658 16565584 16637694 16671625 NC_060946.1 CM021589.2 99.68 True local misassembly 16566949 16573276 16671626 16677952 NC_060946.1 CM021589.2 99.73 True local misassembly 16573958 17241023 16677953 17349640 NC_060946.1 CM021589.2 98.64 True indel: indel (> 5bp) 17241092 17771441 17349641 17880107 NC_060946.1 CM021589.2 99.81 True indel: indel (> 5bp) 17771496 19070285 17880224 19190681 NC_060946.1 CM021589.2 98.31 True local misassembly 19070415 19487722 19190711 19608191 NC_060946.1 CM021589.2 99.37 True local misassembly 19487721 20453596 19608885 20574274 NC_060946.1 CM021589.2 99.78 True local misassembly 20454130 20541416 20574275 20661553 NC_060946.1 CM021589.2 99.73 True local misassembly 20542732 20725239 20663241 20845729 NC_060946.1 CM021589.2 99.42 True relocation, inconsistency = 17073 20742313 20758083 20845730 20861653 NC_060946.1 CM021589.2 98.41 True local misassembly 20765423 21577311 20863199 21674864 NC_060946.1 CM021589.2 99.73 True local misassembly 21578172 21736341 21674865 21832973 NC_060946.1 CM021589.2 99.61 True local misassembly 21736839 22534358 21834731 22631920 NC_060946.1 CM021589.2 99.75 True indel: indel (> 5bp) 22534385 25066635 22631983 25168767 NC_060946.1 CM021589.2 99.54 True local misassembly 25067443 25244825 25169666 25347181 NC_060946.1 CM021589.2 99.64 True indel: indel (> 5bp) 25244939 29581120 25347335 29683358 NC_060946.1 CM021589.2 99.79 True local misassembly 29582706 31087309 29683706 31187783 NC_060946.1 CM021589.2 99.8 True local misassembly 31087500 33824408 31188162 33924623 NC_060946.1 CM021589.2 99.69 True local misassembly 33824423 34854280 33929145 34961547 NC_060946.1 CM021589.2 99.46 True local misassembly 34855014 35847293 34962202 35954070 NC_060946.1 CM021589.2 99.82 True indel: indel (> 5bp) 35847469 36894206 35954255 37002566 NC_060946.1 CM021589.2 99.66 True indel: indel (> 5bp) 36894366 38572251 37002732 38676820 NC_060946.1 CM021589.2 99.58 True local misassembly 38573025 39487633 38677410 39589309 NC_060946.1 CM021589.2 99.55 True relocation, inconsistency = -31935 39455699 42418690 39589310 42550435 NC_060946.1 CM021589.2 99.69 True local misassembly 42419497 42803620 42551698 42935689 NC_060946.1 CM021589.2 99.9 True indel: indel (<= 5bp) 42803642 43978450 42935708 44108593 NC_060946.1 CM021589.2 99.49 True local misassembly 43979077 43980114 44109943 44110980 NC_060946.1 CM021589.2 99.42 True indel: indel (<= 5bp) 43980116 43981010 44110981 44111875 NC_060946.1 CM021589.2 100.0 True indel: indel (<= 5bp) 43981012 43981683 44111876 44112547 NC_060946.1 CM021589.2 99.7 True local misassembly 43982468 45564251 44113117 45696748 NC_060946.1 CM021589.2 99.48 True local misassembly 45564742 45713227 45697257 45846045 NC_060946.1 CM021589.2 99.5 True local misassembly 45713801 46414046 45846488 46546030 NC_060946.1 CM021589.2 99.67 True indel: indel (> 5bp) 46414040 46955033 46546060 47087015 NC_060946.1 CM021589.2 99.78 True local misassembly 46956289 47122034 47088256 47253426 NC_060946.1 CM021589.2 99.2 True local misassembly 47122705 47617514 47254006 47749683 NC_060946.1 CM021589.2 99.24 True local misassembly 47617773 49623378 47749829 49752991 NC_060946.1 CM021589.2 99.3 True indel: indel (> 5bp) 49623531 49889541 49753114 50020917 NC_060946.1 CM021589.2 98.61 True local misassembly 49889986 50783512 50021558 50911728 NC_060946.1 CM021589.2 99.12 True local misassembly 50783905 51196549 50912481 51324858 NC_060946.1 CM021589.2 99.65 True local misassembly 51198069 51322262 51326701 51451785 NC_060946.1 CM021589.2 99.27 True local misassembly 51322515 51324894 51451951 51454383 NC_060946.1 CM021589.2 95.12 True CONTIG CM021589.2 51454416 misassembled 5691 21885 5616 21650 NC_060948.1 CM021590.2 96.77 True translocation 52404 53581 23126 24303 NC_060947.1 CM021590.2 97.28 True indel: indel (> 5bp) 53643 54741 24304 25402 NC_060947.1 CM021590.2 98.54 True local misassembly 54991 55827 25957 26793 NC_060947.1 CM021590.2 97.85 True local misassembly 56008 57065 27340 28397 NC_060947.1 CM021590.2 98.02 True local misassembly 61209 61938 30528 31257 NC_060947.1 CM021590.2 98.77 True local misassembly 62621 63828 31696 32903 NC_060947.1 CM021590.2 99.25 True local misassembly 63829 65046 33026 34243 NC_060947.1 CM021590.2 99.26 True local misassembly 66628 67663 34526 35561 NC_060947.1 CM021590.2 97.2 True local misassembly 68228 71996 36021 39789 NC_060947.1 CM021590.2 99.55 True translocation 79882 84557 40587 45262 NC_060948.1 CM021590.2 99.74 True indel: indel (<= 5bp) 84559 87383 45263 48087 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 87384 92371 48092 53079 NC_060948.1 CM021590.2 99.84 True indel: indel (> 5bp) 92427 93031 53080 53684 NC_060948.1 CM021590.2 98.18 True translocation 95387 96752 54565 55930 NC_060947.1 CM021590.2 97.73 True local misassembly 98238 100816 55931 58509 NC_060947.1 CM021590.2 97.91 True indel: indel (> 5bp) 100866 108474 58510 66118 NC_060947.1 CM021590.2 99.95 True indel: indel (> 5bp) 108535 270185 66119 226191 NC_060947.1 CM021590.2 97.65 True fake: not a misassembly (possible transposable element) 281090 281685 226211 226806 NC_060948.1 CM021590.2 98.83 True fake: not a misassembly (possible transposable element) 271747 304038 227568 259781 NC_060947.1 CM021590.2 97.5 True translocation 317348 318987 259782 261421 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 318989 321137 261422 263570 NC_060948.1 CM021590.2 100.0 True indel: indel (> 5bp) 321159 324525 263571 266937 NC_060948.1 CM021590.2 99.82 True indel: stretch of mismatches 324553 326619 266965 269031 NC_060948.1 CM021590.2 99.9 True local misassembly 328876 329481 270037 270642 NC_060948.1 CM021590.2 99.83 True local misassembly 330540 331756 272038 273254 NC_060948.1 CM021590.2 99.59 True indel: indel (> 5bp) 331907 345272 273389 286754 NC_060948.1 CM021590.2 99.99 True indel: indel (<= 5bp) 345273 346631 286756 288114 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 346632 347835 288116 289319 NC_060948.1 CM021590.2 99.75 True local misassembly 348533 578471 289903 523173 NC_060948.1 CM021590.2 96.27 True local misassembly 579722 712839 524551 657329 NC_060948.1 CM021590.2 97.02 True indel: indel (<= 5bp) 713034 796425 657528 741872 NC_060948.1 CM021590.2 97.04 True local misassembly 799986 800677 744454 745145 NC_060948.1 CM021590.2 99.57 True local misassembly 801960 802946 746075 747061 NC_060948.1 CM021590.2 99.49 True local misassembly 804811 809259 748193 752641 NC_060948.1 CM021590.2 99.78 True indel: indel (> 5bp) 809381 813202 752783 756604 NC_060948.1 CM021590.2 99.97 True indel: indel (> 5bp) 813203 813977 756628 757402 NC_060948.1 CM021590.2 98.84 True indel: indel (<= 5bp) 813979 815230 757403 758654 NC_060948.1 CM021590.2 100.0 True local misassembly 815539 821072 758655 764188 NC_060948.1 CM021590.2 99.91 True indel: indel (<= 5bp) 821073 821695 764191 764813 NC_060948.1 CM021590.2 99.84 True indel: indel (<= 5bp) 821711 823346 764825 766460 NC_060948.1 CM021590.2 99.45 True indel: indel (> 5bp) 823347 824234 766468 767355 NC_060948.1 CM021590.2 99.66 True indel: indel (<= 5bp) 824235 827124 767360 770249 NC_060948.1 CM021590.2 99.38 True local misassembly 827245 828137 770642 771534 NC_060948.1 CM021590.2 99.89 True indel: indel (<= 5bp) 828487 830266 771882 773661 NC_060948.1 CM021590.2 99.33 True indel: indel (<= 5bp) 830468 831797 773868 775197 NC_060948.1 CM021590.2 99.77 True local misassembly 833049 833896 775563 776410 NC_060948.1 CM021590.2 99.88 True indel: indel (<= 5bp) 833897 835387 776415 777905 NC_060948.1 CM021590.2 99.66 True indel: indel (> 5bp) 835738 1000336 778311 942402 NC_060948.1 CM021590.2 96.67 True local misassembly 1001787 1002785 944020 945018 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1002787 1003952 945019 946184 NC_060948.1 CM021590.2 99.31 True indel: indel (> 5bp) 1003953 1006130 946234 948411 NC_060948.1 CM021590.2 99.54 True indel: indel (> 5bp) 1006153 1007763 948461 950071 NC_060948.1 CM021590.2 99.81 True indel: indel (> 5bp) 1007764 1008501 950092 950829 NC_060948.1 CM021590.2 99.19 True local misassembly 1009675 1011164 951995 953484 NC_060948.1 CM021590.2 99.87 True indel: indel (> 5bp) 1011165 1012074 953503 954412 NC_060948.1 CM021590.2 99.56 True local misassembly 1012957 1027738 956136 970540 NC_060948.1 CM021590.2 96.03 True local misassembly 1029474 1030394 976340 977260 NC_060948.1 CM021590.2 99.67 True indel: indel (<= 5bp) 1030662 1033018 977533 979889 NC_060948.1 CM021590.2 99.41 True indel: indel (<= 5bp) 1033019 1034574 979891 981446 NC_060948.1 CM021590.2 99.81 True local misassembly 1034783 1035946 981447 982610 NC_060948.1 CM021590.2 99.4 True local misassembly 1036659 1060655 983300 1007615 NC_060948.1 CM021590.2 97.56 True local misassembly 1060547 1095410 1007616 1042357 NC_060948.1 CM021590.2 99.33 True local misassembly 1096690 1150724 1043548 1098025 NC_060948.1 CM021590.2 97.72 True local misassembly 1151357 1152002 1098658 1099303 NC_060948.1 CM021590.2 100.0 True local misassembly 1152579 1153727 1099855 1101003 NC_060948.1 CM021590.2 99.83 True indel: indel (> 5bp) 1153728 1156287 1101011 1103570 NC_060948.1 CM021590.2 99.57 True local misassembly 1156789 1158322 1103767 1105300 NC_060948.1 CM021590.2 99.74 True local misassembly 1158662 1159547 1105301 1106186 NC_060948.1 CM021590.2 99.21 True local misassembly 1160124 1160714 1107333 1107923 NC_060948.1 CM021590.2 96.79 True local misassembly 1161203 1162253 1108889 1109939 NC_060948.1 CM021590.2 96.86 True local misassembly 1162647 1164116 1111014 1112483 NC_060948.1 CM021590.2 99.8 True indel: indel (<= 5bp) 1164122 1165218 1112484 1113580 NC_060948.1 CM021590.2 99.64 True indel: indel (<= 5bp) 1165222 1165800 1113581 1114159 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1165802 1168070 1114160 1116428 NC_060948.1 CM021590.2 99.96 True local misassembly 1168543 1171517 1117241 1120215 NC_060948.1 CM021590.2 99.8 True local misassembly 1171845 1174609 1120427 1123191 NC_060948.1 CM021590.2 99.86 True indel: indel (<= 5bp) 1174914 1175492 1123492 1124070 NC_060948.1 CM021590.2 99.65 True indel: indel (<= 5bp) 1175685 1178486 1124261 1127062 NC_060948.1 CM021590.2 99.93 True local misassembly 1178838 1179804 1127870 1128836 NC_060948.1 CM021590.2 99.69 True indel: indel (<= 5bp) 1180287 1184522 1129323 1133558 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1184523 1186294 1133561 1135332 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1186295 1188435 1135334 1137474 NC_060948.1 CM021590.2 100.0 True indel: stretch of mismatches 1188479 1189848 1137518 1138887 NC_060948.1 CM021590.2 99.85 True indel: indel (> 5bp) 1189909 1191486 1138958 1140535 NC_060948.1 CM021590.2 99.87 True indel: indel (<= 5bp) 1191487 1192999 1140537 1142049 NC_060948.1 CM021590.2 99.8 True local misassembly 1193568 1198023 1143489 1147944 NC_060948.1 CM021590.2 99.78 True indel: indel (<= 5bp) 1198199 1199081 1148117 1148999 NC_060948.1 CM021590.2 99.21 True local misassembly 1199631 1200182 1149545 1150096 NC_060948.1 CM021590.2 99.46 True indel: indel (<= 5bp) 1200496 1202416 1150408 1152328 NC_060948.1 CM021590.2 99.84 True local misassembly 1202417 1204880 1152451 1154914 NC_060948.1 CM021590.2 99.92 True indel: indel (<= 5bp) 1204882 1206066 1154915 1156099 NC_060948.1 CM021590.2 99.49 True indel: indel (<= 5bp) 1206320 1208272 1156356 1158308 NC_060948.1 CM021590.2 99.44 True indel: stretch of mismatches 1208429 1209998 1158465 1160034 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1209999 1213399 1160036 1163436 NC_060948.1 CM021590.2 99.94 True local misassembly 1213958 1217697 1163968 1167707 NC_060948.1 CM021590.2 99.71 True indel: indel (<= 5bp) 1217699 1218370 1167708 1168379 NC_060948.1 CM021590.2 99.85 True indel: indel (<= 5bp) 1218693 1219713 1168701 1169721 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1220034 1220924 1170037 1170927 NC_060948.1 CM021590.2 100.0 True indel: indel (> 5bp) 1220932 1225620 1170928 1175616 NC_060948.1 CM021590.2 100.0 True local misassembly 1225973 1226899 1176703 1177629 NC_060948.1 CM021590.2 99.68 True indel: stretch of mismatches 1226935 1227538 1177665 1178268 NC_060948.1 CM021590.2 99.67 True indel: indel (<= 5bp) 1227539 1229567 1178273 1180301 NC_060948.1 CM021590.2 99.8 True indel: indel (> 5bp) 1229580 1230163 1180302 1180885 NC_060948.1 CM021590.2 99.32 True local misassembly 1232158 1233611 1182637 1184090 NC_060948.1 CM021590.2 99.72 True local misassembly 1239104 1239612 1184692 1185200 NC_060948.1 CM021590.2 98.43 True local misassembly 1240785 1241551 1186147 1186913 NC_060948.1 CM021590.2 99.48 True indel: indel (<= 5bp) 1241861 1244123 1187225 1189487 NC_060948.1 CM021590.2 99.78 True indel: indel (> 5bp) 1244354 1245234 1189699 1190579 NC_060948.1 CM021590.2 99.32 True local misassembly 1246446 1247067 1191712 1192333 NC_060948.1 CM021590.2 99.68 True indel: indel (> 5bp) 1247068 1254346 1192340 1199618 NC_060948.1 CM021590.2 99.81 True local misassembly 1255029 1256657 1200182 1201810 NC_060948.1 CM021590.2 99.82 True indel: indel (<= 5bp) 1256659 1257208 1201811 1202360 NC_060948.1 CM021590.2 100.0 True indel: indel (> 5bp) 1257209 1257723 1202379 1202893 NC_060948.1 CM021590.2 99.81 True indel: indel (<= 5bp) 1257725 1258346 1202894 1203515 NC_060948.1 CM021590.2 99.2 True indel: indel (> 5bp) 1258406 1264271 1203542 1209407 NC_060948.1 CM021590.2 99.98 True indel: indel (<= 5bp) 1264276 1266561 1209408 1211693 NC_060948.1 CM021590.2 99.91 True indel: indel (<= 5bp) 1266634 1269369 1211771 1214506 NC_060948.1 CM021590.2 99.96 True indel: indel (<= 5bp) 1269370 1269925 1214511 1215066 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1269930 1270871 1215067 1216008 NC_060948.1 CM021590.2 100.0 True indel: indel (<= 5bp) 1270876 1271953 1216009 1217086 NC_060948.1 CM021590.2 100.0 True local misassembly 1272584 1274185 1217087 1218688 NC_060948.1 CM021590.2 99.81 True indel: indel (<= 5bp) 1274186 1278684 1218690 1223188 NC_060948.1 CM021590.2 99.53 True indel: indel (> 5bp) 1278694 1516476 1223258 1460549 NC_060948.1 CM021590.2 98.41 True local misassembly 1516559 1636787 1460926 1580770 NC_060948.1 CM021590.2 98.84 True local misassembly 1637003 1650893 1581084 1594891 NC_060948.1 CM021590.2 98.29 True translocation 1591490 1775349 1594895 1778552 NC_060947.1 CM021590.2 98.96 True local misassembly 1776105 1796556 1779343 1799839 NC_060947.1 CM021590.2 98.31 True local misassembly 1797162 1817018 1799951 1819532 NC_060947.1 CM021590.2 97.77 True indel: indel (<= 5bp) 1817105 1823363 1819617 1825842 NC_060947.1 CM021590.2 98.72 True indel: indel (> 5bp) 1823868 1921963 1826296 1923247 NC_060947.1 CM021590.2 97.03 True indel: indel (> 5bp) 1922023 1929276 1923387 1930648 NC_060947.1 CM021590.2 99.5 True local misassembly 1930511 2006397 1931718 2007610 NC_060947.1 CM021590.2 99.37 True indel: indel (> 5bp) 2006389 2649121 2007674 2651269 NC_060947.1 CM021590.2 99.61 True local misassembly 2650492 2929654 2651637 2930522 NC_060947.1 CM021590.2 99.61 True indel: indel (> 5bp) 2929921 3253727 2930846 3254155 NC_060947.1 CM021590.2 99.6 True local misassembly 3258812 3480828 3254156 3476196 NC_060947.1 CM021590.2 99.68 True relocation, inconsistency = -38438 3442391 3537670 3476197 3571483 NC_060947.1 CM021590.2 99.65 True local misassembly 3539345 3785329 3572889 3818696 NC_060947.1 CM021590.2 99.69 True local misassembly 3786708 5231310 3818697 5258036 NC_060947.1 CM021590.2 99.39 True indel: indel (<= 5bp) 5231336 5342116 5258061 5368927 NC_060947.1 CM021590.2 99.46 True indel: indel (<= 5bp) 5342283 5771307 5369090 5798353 NC_060947.1 CM021590.2 99.78 True fake: not a misassembly (possible transposable element) 5771308 5772642 5799678 5798362 NC_060947.1 CM021590.2 97.39 True fake: not a misassembly (possible transposable element) 5772649 7845674 5800036 7868817 NC_060947.1 CM021590.2 99.36 True local misassembly 7846198 7993084 7869403 8016233 NC_060947.1 CM021590.2 99.66 True local misassembly 7993915 8979556 8016922 9001765 NC_060947.1 CM021590.2 99.79 True local misassembly 8979987 8981401 9002083 9003496 NC_060947.1 CM021590.2 97.24 True local misassembly 8981862 8982365 9004071 9004574 NC_060947.1 CM021590.2 98.21 True local misassembly 8982907 8983410 9005002 9005505 NC_060947.1 CM021590.2 98.21 True local misassembly 8985803 8991168 9006035 9011402 NC_060947.1 CM021590.2 97.88 True local misassembly 8991743 8992246 9011863 9012366 NC_060947.1 CM021590.2 97.22 True local misassembly 8993707 11173290 9013828 11194181 NC_060947.1 CM021590.2 99.82 True local misassembly 11173463 11776363 11194261 11797103 NC_060947.1 CM021590.2 99.93 True indel: indel (> 5bp) 11776506 14849609 11797203 14869833 NC_060947.1 CM021590.2 99.87 True local misassembly 14850439 19034859 14869834 19053948 NC_060947.1 CM021590.2 99.89 True indel: indel (> 5bp) 19034926 25527288 19054090 25543902 NC_060947.1 CM021590.2 99.79 True local misassembly 25527541 30466517 25544259 30479195 NC_060947.1 CM021590.2 99.67 True indel: indel (> 5bp) 30466637 32607521 30479254 32619039 NC_060947.1 CM021590.2 99.76 True local misassembly 32608521 33517138 32619383 33527952 NC_060947.1 CM021590.2 99.88 True indel: indel (> 5bp) 33517321 38128715 33528117 38139641 NC_060947.1 CM021590.2 99.93 True local misassembly 38128714 39958848 38143770 39973423 NC_060947.1 CM021590.2 99.88 True indel: indel (> 5bp) 39958936 40017565 39973538 40032179 NC_060947.1 CM021590.2 99.76 True local misassembly 40018098 41180844 40032754 41194710 NC_060947.1 CM021590.2 99.8 True local misassembly 41179954 43850001 41195568 43865717 NC_060947.1 CM021590.2 99.92 True local misassembly 43853010 44008070 43865718 44020660 NC_060947.1 CM021590.2 99.65 True local misassembly 44008227 45336158 44020661 45350678 NC_060947.1 CM021590.2 99.65 True local misassembly 45337251 47789157 45353868 47805753 NC_060947.1 CM021590.2 99.9 True indel: indel (<= 5bp) 47789221 48748618 47805818 48765227 NC_060947.1 CM021590.2 99.87 True relocation, inconsistency = -19064 48729555 50963275 48765228 51000344 NC_060947.1 CM021590.2 99.8 True indel: indel (> 5bp) 50963365 51348881 51000353 51385830 NC_060947.1 CM021590.2 99.76 True relocation, inconsistency = -36418 51348882 51448696 51485700 51385831 NC_060947.1 CM021590.2 99.66 True inversion 51448697 52205012 51485701 52241940 NC_060947.1 CM021590.2 99.93 True relocation, inconsistency = -37907 52205014 52220226 52257504 52241941 NC_060947.1 CM021590.2 99.47 True inversion 52220227 54773303 52257505 54810243 NC_060947.1 CM021590.2 99.87 True relocation, inconsistency = -26567 54773304 54786225 54823161 54810244 NC_060947.1 CM021590.2 99.82 True inversion 54786226 56071897 54823162 56111856 NC_060947.1 CM021590.2 99.54 True relocation, inconsistency = -10810 56061088 57866164 56111857 57917636 NC_060947.1 CM021590.2 99.82 True local misassembly 57870279 57876798 57917637 57924156 NC_060947.1 CM021590.2 99.18 True local misassembly 57880912 58003973 57924157 58047215 NC_060947.1 CM021590.2 98.95 True relocation, inconsistency = -20567 57983407 57989924 58047216 58053734 NC_060947.1 CM021590.2 98.72 True local misassembly 57996094 58060823 58053735 58118124 NC_060947.1 CM021590.2 98.68 True relocation, inconsistency = 244406 58305230 58319452 58118125 58131667 NC_060947.1 CM021590.2 97.86 True relocation, inconsistency = -255025 58064428 58099829 58131668 58167072 NC_060947.1 CM021590.2 99.01 True relocation, inconsistency = 12342 58112172 58135468 58167073 58190369 NC_060947.1 CM021590.2 98.89 True relocation, inconsistency = 14397 58149866 58243305 58190370 58283807 NC_060947.1 CM021590.2 99.07 True local misassembly 58245362 58256816 58283808 58295263 NC_060947.1 CM021590.2 99.01 True local misassembly 58250647 58369211 58295264 58413826 NC_060947.1 CM021590.2 99.25 True relocation, inconsistency = -279707 58089505 58100960 58413827 58425282 NC_060947.1 CM021590.2 98.83 True local misassembly 58107132 58127287 58425283 58445438 NC_060947.1 CM021590.2 98.59 True relocation, inconsistency = -63761 58063527 58092731 58445439 58474642 NC_060947.1 CM021590.2 98.65 True relocation, inconsistency = -28792 58063940 58099328 58474643 58510032 NC_060947.1 CM021590.2 99.13 True relocation, inconsistency = 146034 58245363 58251148 58510033 58515819 NC_060947.1 CM021590.2 98.58 True local misassembly 58244979 58273864 58515820 58544708 NC_060947.1 CM021590.2 98.61 True relocation, inconsistency = -16453 58257412 58281455 58544709 58568759 NC_060947.1 CM021590.2 98.41 True relocation, inconsistency = 86371 58367827 58408083 58568760 58609014 NC_060947.1 CM021590.2 99.03 True relocation, inconsistency = 28595 58436679 58502970 58609015 58675104 NC_060947.1 CM021590.2 98.47 True local misassembly 58496800 58515800 58675105 58694105 NC_060947.1 CM021590.2 99.41 True local misassembly 58510836 58537959 58694106 58721229 NC_060947.1 CM021590.2 99.16 True local misassembly 58535903 58631373 58721230 58816699 NC_060947.1 CM021590.2 99.44 True relocation, inconsistency = 20570 58651944 58758370 58816700 58923101 NC_060947.1 CM021590.2 98.9 True local misassembly 58762485 58775396 58923102 58936013 NC_060947.1 CM021590.2 99.24 True relocation, inconsistency = -18513 58756884 58779351 58936014 58958480 NC_060947.1 CM021590.2 99.04 True relocation, inconsistency = 12342 58791694 58844966 58958481 59011753 NC_060947.1 CM021590.2 99.05 True indel: stretch of mismatches 58844967 58936689 59011754 59103480 NC_060947.1 CM021590.2 98.76 True local misassembly 58940804 58945945 59103481 59108622 NC_060947.1 CM021590.2 99.57 True relocation, inconsistency = -11136 58934810 58950766 59108623 59124579 NC_060947.1 CM021590.2 99.57 True relocation, inconsistency = -17307 58933460 58935778 59124580 59126898 NC_060947.1 CM021590.2 99.31 True relocation, inconsistency = 78305 59014084 59036736 59126899 59149551 NC_060947.1 CM021590.2 99.54 True relocation, inconsistency = -13193 59023544 59031989 59149552 59157997 NC_060947.1 CM021590.2 99.47 True relocation, inconsistency = -88590 58943400 58960685 59157998 59175283 NC_060947.1 CM021590.2 99.51 True local misassembly 58956572 58958545 59175284 59177257 NC_060947.1 CM021590.2 99.6 True local misassembly 58952375 58967128 59177258 59192011 NC_060947.1 CM021590.2 99.39 True relocation, inconsistency = 53976 59021105 59057034 59192012 59227936 NC_060947.1 CM021590.2 99.63 True relocation, inconsistency = 347778 59404813 59420593 59227937 59243716 NC_060947.1 CM021590.2 99.34 True indel: stretch of mismatches 59420594 59436633 59243717 59259760 NC_060947.1 CM021590.2 99.55 True relocation, inconsistency = -339541 59097093 59105901 59259761 59268569 NC_060947.1 CM021590.2 99.65 True local misassembly 59110016 59132674 59268570 59291570 NC_060947.1 CM021590.2 98.3 True relocation, inconsistency = 112439 59245114 59247225 59291571 59293682 NC_060947.1 CM021590.2 99.69 True relocation, inconsistency = 48852 59296078 59302879 59293683 59300488 NC_060947.1 CM021590.2 99.67 True relocation, inconsistency = -81587 59221293 59236078 59300489 59315443 NC_060947.1 CM021590.2 98.28 True relocation, inconsistency = 40966 59277136 59296022 59315535 59334762 NC_060947.1 CM021590.2 97.94 True fake: not a misassembly (possible transposable element) 59245114 59247225 59334763 59336874 NC_060947.1 CM021590.2 99.67 True fake: not a misassembly (possible transposable element) 59296078 59303137 59336875 59343938 NC_060947.1 CM021590.2 99.69 True relocation, inconsistency = 78166 59381304 59398821 59343939 59361455 NC_060947.1 CM021590.2 99.7 True relocation, inconsistency = -867877 58530945 58535747 59361456 59366259 NC_060947.1 CM021590.2 98.08 True relocation, inconsistency = 509807 59045864 59049981 59366569 59370682 NC_060947.1 CM021590.2 99.73 True local misassembly 59043803 59049977 59370683 59376849 NC_060947.1 CM021590.2 99.61 True relocation, inconsistency = 281958 59331936 59347220 59376850 59392134 NC_060947.1 CM021590.2 99.6 True relocation, inconsistency = -10285 59336936 59338055 59392135 59393254 NC_060947.1 CM021590.2 99.65 True local misassembly 59333942 59348391 59393255 59407704 NC_060947.1 CM021590.2 99.52 True relocation, inconsistency = -20570 59327822 59344294 59407705 59424177 NC_060947.1 CM021590.2 99.66 True relocation, inconsistency = 57592 59401887 59425589 59424178 59447878 NC_060947.1 CM021590.2 99.81 True relocation, inconsistency = -362171 59063419 59068539 59447879 59452999 NC_060947.1 CM021590.2 99.28 True relocation, inconsistency = -10278 59058262 59071857 59453000 59466602 NC_060947.1 CM021590.2 99.3 True relocation, inconsistency = 473230 59545198 59574552 59466713 59496074 NC_060947.1 CM021590.2 99.35 True relocation, inconsistency = -96657 59477896 59489197 59496075 59507377 NC_060947.1 CM021590.2 99.48 True local misassembly 59485089 59508590 59507378 59530893 NC_060947.1 CM021590.2 99.32 True relocation, inconsistency = -16454 59492137 59508590 59530894 59547347 NC_060947.1 CM021590.2 99.4 True local misassembly 59504480 59518613 59547348 59561478 NC_060947.1 CM021590.2 99.61 True relocation, inconsistency = -20564 59498295 59507705 59561724 59571135 NC_060947.1 CM021590.2 99.18 True local misassembly 59503598 59510342 59571136 59577887 NC_060947.1 CM021590.2 99.47 True local misassembly 59508286 59524759 59577888 59594362 NC_060947.1 CM021590.2 99.59 True local misassembly 59518589 59523759 59594363 59599533 NC_060947.1 CM021590.2 99.41 True local misassembly 59529931 59562835 59599534 59632445 NC_060947.1 CM021590.2 99.49 True relocation, inconsistency = -32905 59529931 59580758 59632446 59683273 NC_060947.1 CM021590.2 99.46 True relocation, inconsistency = -512306 59068453 59094511 59683274 59709333 NC_060947.1 CM021590.2 99.4 True relocation, inconsistency = 382738 59477250 59479388 59709334 59711472 NC_060947.1 CM021590.2 99.5 True relocation, inconsistency = -14399 59464990 59480977 59711473 59727460 NC_060947.1 CM021590.2 99.52 True local misassembly 59485092 59506534 59727461 59748914 NC_060947.1 CM021590.2 99.32 True relocation, inconsistency = 152195 59658730 59660370 59748915 59750558 NC_060947.1 CM021590.2 99.7 True relocation, inconsistency = -129567 59530804 59543140 59750559 59762884 NC_060947.1 CM021590.2 99.24 True relocation, inconsistency = 127510 59670651 59699365 59762885 59791599 NC_060947.1 CM021590.2 99.51 True local misassembly 59697416 59734264 59791707 59828555 NC_060947.1 CM021590.2 99.72 True local misassembly 59736322 59743569 59828556 59835804 NC_060947.1 CM021590.2 99.35 True relocation, inconsistency = -197445 59546293 59580758 59835973 59870445 NC_060947.1 CM021590.2 99.25 True relocation, inconsistency = 208772 59789531 59802775 59870446 59883689 NC_060947.1 CM021590.2 99.45 True relocation, inconsistency = 16448 59819331 59827921 59883797 59892387 NC_060947.1 CM021590.2 99.48 True local misassembly 59823808 59837902 59892388 59906479 NC_060947.1 CM021590.2 99.53 True relocation, inconsistency = -34954 59802949 59805389 59906480 59908923 NC_060947.1 CM021590.2 99.64 True local misassembly 59807446 59857199 59908924 59958678 NC_060947.1 CM021590.2 99.8 True local misassembly 59859257 59903764 59958679 60003186 NC_060947.1 CM021590.2 99.82 True relocation, inconsistency = -18507 59885258 59903764 60003187 60021694 NC_060947.1 CM021590.2 99.77 True local misassembly 59901709 59908829 60021695 60028815 NC_060947.1 CM021590.2 99.59 True local misassembly 59906774 59926981 60028816 60049025 NC_060947.1 CM021590.2 99.63 True relocation, inconsistency = 137759 60064741 60078861 60049026 60063149 NC_060947.1 CM021590.2 99.46 True relocation, inconsistency = -24672 60054190 60078306 60063150 60087267 NC_060947.1 CM021590.2 99.6 True relocation, inconsistency = -166547 59911760 59919040 60087268 60094549 NC_060947.1 CM021590.2 99.53 True relocation, inconsistency = 76075 59995116 60038513 60094550 60137950 NC_060947.1 CM021590.2 99.75 True relocation, inconsistency = 88415 60126929 60131665 60137951 60142687 NC_060947.1 CM021590.2 99.69 True relocation, inconsistency = -22618 60109048 60144271 60142688 60177930 NC_060947.1 CM021590.2 99.49 True local misassembly 60146327 60150252 60177931 60181858 NC_060947.1 CM021590.2 99.03 True relocation, inconsistency = -22638 60128213 60139065 60182457 60193291 NC_060947.1 CM021590.2 98.87 True relocation, inconsistency = 20564 60159630 60169912 60193292 60203573 NC_060947.1 CM021590.2 99.42 True local misassembly 60174027 60190480 60203574 60220027 NC_060947.1 CM021590.2 99.54 True local misassembly 60186368 60234694 60220028 60268352 NC_060947.1 CM021590.2 99.73 True relocation, inconsistency = -10285 60224410 60234168 60268353 60278111 NC_060947.1 CM021590.2 99.65 True local misassembly 60237077 60246154 60278112 60287189 NC_060947.1 CM021590.2 99.57 True relocation, inconsistency = -18157 60227998 60246154 60287190 60305344 NC_060947.1 CM021590.2 99.71 True local misassembly 60241190 60264580 60305345 60329074 NC_060947.1 CM021590.2 98.19 True relocation, inconsistency = 22623 60287204 60294726 60329075 60336597 NC_060947.1 CM021590.2 98.83 True relocation, inconsistency = -35660 60259067 60275226 60336598 60352757 NC_060947.1 CM021590.2 99.51 True local misassembly 60271116 60272401 60352758 60354044 NC_060947.1 CM021590.2 99.48 True local misassembly 60276514 60287307 60354045 60365179 NC_060947.1 CM021590.2 96.23 True local misassembly 60293138 60308593 60365180 60380976 NC_060947.1 CM021590.2 97.35 True local misassembly 60310651 60311169 60380977 60381495 NC_060947.1 CM021590.2 99.78 True local misassembly 60309113 60327307 60381496 60399691 NC_060947.1 CM021590.2 99.8 True relocation, inconsistency = -14058 60313250 60318379 60399692 60404821 NC_060947.1 CM021590.2 99.62 True relocation, inconsistency = 26057 60344437 60353524 60404822 60413909 NC_060947.1 CM021590.2 99.66 True local misassembly 60349411 60373225 60413910 60437724 NC_060947.1 CM021590.2 99.78 True local misassembly 60377340 60393110 60437725 60453490 NC_060947.1 CM021590.2 99.55 True relocation, inconsistency = 53465 60446576 60447737 60453491 60454652 NC_060947.1 CM021590.2 99.44 True relocation, inconsistency = -55522 60392216 60425560 60454653 60488000 NC_060947.1 CM021590.2 99.54 True local misassembly 60423504 60433667 60488001 60498164 NC_060947.1 CM021590.2 99.81 True indel: stretch of mismatches 60433668 60460974 60498165 60525470 NC_060947.1 CM021590.2 99.85 True local misassembly 60454804 60459019 60525471 60529686 NC_060947.1 CM021590.2 99.61 True relocation, inconsistency = 18509 60477529 60488869 60529687 60541027 NC_060947.1 CM021590.2 99.76 True relocation, inconsistency = -22623 60466247 60498702 60541028 60573480 NC_060947.1 CM021590.2 99.85 True relocation, inconsistency = 148001 60647150 60662212 60573927 60588992 NC_060947.1 CM021590.2 99.52 True local misassembly 60660156 60664433 60588993 60593270 NC_060947.1 CM021590.2 99.57 True relocation, inconsistency = -156226 60508208 60528841 60593271 60613904 NC_060947.1 CM021590.2 99.69 True local misassembly 60535013 60536174 60613905 60615066 NC_060947.1 CM021590.2 99.69 True local misassembly 60538232 60550573 60615067 60627408 NC_060947.1 CM021590.2 99.78 True local misassembly 60546460 60593341 60627409 60674290 NC_060947.1 CM021590.2 99.75 True local misassembly 60591285 60616812 60674291 60699824 NC_060947.1 CM021590.2 99.8 True local misassembly 60610649 60659158 60699825 60748333 NC_060947.1 CM021590.2 99.8 True relocation, inconsistency = -150056 60509103 60532955 60748334 60772186 NC_060947.1 CM021590.2 99.6 True relocation, inconsistency = 164454 60697410 60700628 60772187 60775405 NC_060947.1 CM021590.2 99.59 True local misassembly 60702686 60725971 60775406 60798692 NC_060947.1 CM021590.2 99.78 True local misassembly 60723916 60727365 60798693 60802142 NC_060947.1 CM021590.2 99.5 True local misassembly 60733537 60765863 60802143 60834469 NC_060947.1 CM021590.2 99.76 True local misassembly 60763807 60764420 60834470 60835083 NC_060947.1 CM021590.2 99.6 True relocation, inconsistency = -8228 60756193 60765863 60835084 60844754 NC_060947.1 CM021590.2 99.73 True local misassembly 60769978 60770558 60844755 60845335 NC_060947.1 CM021590.2 99.71 True relocation, inconsistency = -213814 60556745 60578230 60845336 60866821 NC_060947.1 CM021590.2 99.59 True relocation, inconsistency = 217928 60796179 60799356 60866842 60870019 NC_060947.1 CM021590.2 99.77 True relocation, inconsistency = -277581 60521776 60545279 60870020 60893523 NC_060947.1 CM021590.2 99.59 True relocation, inconsistency = 271410 60816690 60839782 60893524 60916615 NC_060947.1 CM021590.2 99.61 True relocation, inconsistency = 20570 60860353 67026952 60916616 67082533 NC_060947.1 CM021590.2 99.94 True indel: indel (> 5bp) 67027112 69351236 67082687 69406974 NC_060947.1 CM021590.2 99.83 True local misassembly 69351520 71293695 69408970 71350277 NC_060947.1 CM021590.2 99.9 True indel: stretch of mismatches 71294113 74579442 71350695 74636581 NC_060947.1 CM021590.2 99.88 True inversion 74579443 74582332 74639471 74636582 NC_060947.1 CM021590.2 99.89 True inversion 74582333 78103067 74639472 78156838 NC_060947.1 CM021590.2 99.77 True local misassembly 78103203 78626018 78161023 78693911 NC_060947.1 CM021590.2 96.77 True indel: indel (> 5bp) 78626071 81163876 78694013 81231733 NC_060947.1 CM021590.2 99.89 True local misassembly 81163501 81171282 81237104 81244769 NC_060947.1 CM021590.2 98.23 True local misassembly 81172763 82628255 81246413 82702073 NC_060947.1 CM021590.2 99.89 True indel: indel (> 5bp) 82628240 83997281 82702074 84073557 NC_060947.1 CM021590.2 98.7 True local misassembly 83996919 84173889 84074848 84251985 NC_060947.1 CM021590.2 99.55 True local misassembly 84176197 85268376 84254451 85348447 NC_060947.1 CM021590.2 99.68 True indel: indel (> 5bp) 85268522 85297423 85348582 85377481 NC_060947.1 CM021590.2 99.8 True local misassembly 85299831 85660918 85379780 85741864 NC_060947.1 CM021590.2 99.36 True indel: indel (> 5bp) 85661029 87207185 85741920 87287984 NC_060947.1 CM021590.2 99.87 True local misassembly 87207405 87642567 87288088 87723786 NC_060947.1 CM021590.2 99.42 True local misassembly 87647134 87760619 87726480 87840311 NC_060947.1 CM021590.2 99.47 True indel: indel (> 5bp) 87760762 96664782 87840397 96748224 NC_060947.1 CM021590.2 99.64 True local misassembly 96665358 97290396 96748838 97374176 NC_060947.1 CM021590.2 99.72 True indel: indel (> 5bp) 97290424 99760806 97374274 99844435 NC_060947.1 CM021590.2 99.91 True indel: indel (<= 5bp) 99760910 99986685 99844538 100070323 NC_060947.1 CM021590.2 99.96 True fake: not a misassembly (possible transposable element) 143623906 143625429 100070332 100071871 NC_060933.1 CM021590.2 98.64 True fake: not a misassembly (possible transposable element) 99986671 100046814 100071872 100132039 NC_060947.1 CM021590.2 99.85 True inversion 100046815 100056219 100141440 100132040 NC_060947.1 CM021590.2 99.85 True inversion 100056220 102342428 100141441 102429330 NC_060947.1 CM021590.2 99.81 True fake: not a misassembly (possible transposable element) 102447016 102449083 102431397 102429331 NC_060947.1 CM021590.2 98.43 True fake: not a misassembly (possible transposable element) 102339825 102340909 102432333 102433417 NC_060947.1 CM021590.2 97.33 True local misassembly 102341472 113716496 102433981 113814341 NC_060947.1 CM021590.2 99.88 True local misassembly 113718541 114114103 113814412 114210062 NC_060947.1 CM021590.2 99.87 True indel: indel (> 5bp) 114114136 114183970 114210063 114280227 NC_060947.1 CM021590.2 99.23 True relocation, inconsistency = -50431 114133540 114431246 114280228 114578207 NC_060947.1 CM021590.2 99.55 True relocation, inconsistency = -14919 114431274 115800994 114593154 115963009 NC_060947.1 CM021590.2 99.91 True local misassembly 115801225 119281872 115963135 119443556 NC_060947.1 CM021590.2 99.82 True local misassembly 119286733 121435600 119443557 121592002 NC_060947.1 CM021590.2 99.83 True local misassembly 121439659 125090603 121592066 125242874 NC_060947.1 CM021590.2 99.84 True local misassembly 125090873 126985924 125243630 127139467 NC_060947.1 CM021590.2 99.72 True indel: indel (> 5bp) 126985855 129456171 127139468 129606712 NC_060947.1 CM021590.2 99.79 True local misassembly 129458019 130164457 129608695 130315500 NC_060947.1 CM021590.2 99.71 True indel: indel (<= 5bp) 130164540 134049249 130315585 134200287 NC_060947.1 CM021590.2 99.92 True relocation, inconsistency = 14109 134077567 134102645 134225320 134200288 NC_060947.1 CM021590.2 99.17 True relocation, inconsistency = -11208 134091438 137813213 134225321 137947075 NC_060947.1 CM021590.2 99.89 True local misassembly 137815843 139431905 137950022 139566266 NC_060947.1 CM021590.2 99.85 True relocation, inconsistency = 303979 139735885 139781517 139611908 139566267 NC_060947.1 CM021590.2 99.69 True fake: not a misassembly (possible transposable element) 117357740 117363767 139617936 139611909 NC_060936.1 CM021590.2 99.82 True fake: not a misassembly (possible transposable element) 139431906 139735899 139924490 139617950 NC_060947.1 CM021590.2 99.15 True relocation, inconsistency = 45618 139781518 141152926 139924491 141296398 NC_060947.1 CM021590.2 99.75 True local misassembly 141153307 141522720 141296583 141665908 NC_060947.1 CM021590.2 99.82 True local misassembly 141523488 141962894 141667429 142106854 NC_060947.1 CM021590.2 99.9 True indel: indel (> 5bp) 141963114 145071451 142107105 145211329 NC_060947.1 CM021590.2 99.68 True local misassembly 145072194 145541480 145212060 145681561 NC_060947.1 CM021590.2 99.56 True local misassembly 145538790 148788614 145681562 148931060 NC_060947.1 CM021590.2 99.89 True local misassembly 148789071 148851495 148931275 148993715 NC_060947.1 CM021590.2 99.76 True local misassembly 148851591 149830930 148994285 149971014 NC_060947.1 CM021590.2 99.6 True indel: indel (> 5bp) 149831076 151341966 149971133 151481457 NC_060947.1 CM021590.2 99.76 True fake: not a misassembly (possible transposable element) 151341967 151343160 151482651 151481458 NC_060947.1 CM021590.2 99.83 True fake: not a misassembly (possible transposable element) 151343161 152493095 151482652 152629654 NC_060947.1 CM021590.2 99.45 True relocation, inconsistency = 37798 152530894 152871164 152629655 152969952 NC_060947.1 CM021590.2 99.91 True relocation, inconsistency = 11700 152882865 154257238 152969953 154344433 NC_060947.1 CM021590.2 99.94 True CONTIG CM021590.2 154349815 misassembled 1 29871042 1 29871042 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 29871043 30399815 29871043 30399815 NC_060948.1 CM021591.2 100.0 True local misassembly 30396228 30397384 30399816 30400972 NC_060948.1 CM021591.2 99.6 True local misassembly 30400973 30408129 30400973 30408129 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 30408130 33677201 30408130 33677201 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 33677202 36341229 33677202 36341229 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 36341230 36345923 36341230 36345923 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 36345924 36783257 36345924 36783257 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 36783258 38880747 36783258 38880747 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 38880748 39347700 38880748 39347700 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 39347701 44524836 39347701 44524836 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 44524837 47328294 44524837 47328294 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 47328295 48230301 47328295 48230301 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 48230302 48238716 48230302 48238716 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 48238717 48257840 48238717 48257840 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 48257841 48260061 48257841 48260061 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 48260062 50096146 48260062 50096146 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 50096147 51819129 50096147 51819129 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 51819130 53414242 51819130 53414242 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 53414243 55036902 53414243 55036902 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 55036903 55094096 55036903 55094096 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 55094097 57591159 55094097 57591159 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 57591160 60840687 57591160 60840687 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 60840688 60949619 60840688 60949619 NC_060948.1 CM021591.2 100.0 True indel: stretch of mismatches 60949620 62458777 60949620 62458777 NC_060948.1 CM021591.2 100.0 True CONTIG CM021591.2 62460029 correct 73508821 73509438 4774 4157 NC_060933.1 JAAKGM020000026.1 99.51 True local misassembly 73506715 73507916 6835 5634 NC_060933.1 JAAKGM020000026.1 98.34 True relocation, inconsistency = 1893288 71608800 71610307 11452 9955 NC_060933.1 JAAKGM020000026.1 95.99 True relocation, inconsistency = -1908326 73508871 73515674 19731 12904 NC_060933.1 JAAKGM020000026.1 98.58 True fake: not a misassembly (possible transposable element) 63664107 63665128 20206 21242 NC_060933.1 JAAKGM020000026.1 96.26 True fake: not a misassembly (possible transposable element) 73500479 73501377 29583 28679 NC_060933.1 JAAKGM020000026.1 98.78 True fake: not a misassembly (possible transposable element) 63664107 63665128 30702 31738 NC_060933.1 JAAKGM020000026.1 96.26 True fake: not a misassembly (possible transposable element) 73493925 73495024 40290 39180 NC_060933.1 JAAKGM020000026.1 98.95 True relocation, inconsistency = 36682 73454709 73457242 42829 40291 NC_060933.1 JAAKGM020000026.1 99.02 True indel: indel (> 5bp) 73453313 73454648 44246 42896 NC_060933.1 JAAKGM020000026.1 97.28 True relocation, inconsistency = -27906 73479682 73480250 45783 45215 NC_060933.1 JAAKGM020000026.1 99.82 True indel: indel (<= 5bp) 73478471 73479676 46989 45784 NC_060933.1 JAAKGM020000026.1 99.67 True relocation, inconsistency = 17787446 55687347 55688196 50667 49818 NC_060933.1 JAAKGM020000026.1 97.54 True local misassembly 55687347 55688196 52433 51579 NC_060933.1 JAAKGM020000026.1 98.13 True relocation, inconsistency = -17806353 73492259 73493281 53874 52852 NC_060933.1 JAAKGM020000026.1 99.71 True local misassembly 73490826 73491414 55312 54724 NC_060933.1 JAAKGM020000026.1 99.83 True indel: stretch of mismatches 73489782 73490551 56356 55587 NC_060933.1 JAAKGM020000026.1 99.74 True local misassembly 73488430 73489187 57114 56357 NC_060933.1 JAAKGM020000026.1 99.47 True indel: indel (<= 5bp) 73487451 73488429 58098 57120 NC_060933.1 JAAKGM020000026.1 99.9 True indel: indel (<= 5bp) 73486405 73487450 59149 58104 NC_060933.1 JAAKGM020000026.1 99.9 True fake: not a misassembly (possible transposable element) 73493925 73495024 62154 61044 NC_060933.1 JAAKGM020000026.1 98.95 True fake: not a misassembly (possible transposable element) 73482076 73484614 64693 62155 NC_060933.1 JAAKGM020000026.1 99.21 True indel: indel (> 5bp) 73480650 73482015 66110 64760 NC_060933.1 JAAKGM020000026.1 98.83 True local misassembly 73478352 73480669 68977 66665 NC_060933.1 JAAKGM020000026.1 99.01 True relocation, inconsistency = 17787456 55687347 55688196 72526 71677 NC_060933.1 JAAKGM020000026.1 97.54 True local misassembly 55687347 55688196 74287 73433 NC_060933.1 JAAKGM020000026.1 98.13 True relocation, inconsistency = -17806358 73489782 73493450 78210 74542 NC_060933.1 JAAKGM020000026.1 98.64 True local misassembly 73488430 73489187 78968 78211 NC_060933.1 JAAKGM020000026.1 99.38 True indel: indel (<= 5bp) 73487451 73488429 79952 78974 NC_060933.1 JAAKGM020000026.1 99.8 True indel: indel (<= 5bp) 73486405 73487450 81003 79958 NC_060933.1 JAAKGM020000026.1 99.9 True local misassembly 73483877 73486295 84184 81766 NC_060933.1 JAAKGM020000026.1 99.79 True indel: indel (<= 5bp) 73483009 73483876 85057 84190 NC_060933.1 JAAKGM020000026.1 99.65 True indel: indel (<= 5bp) 73481813 73483003 86248 85058 NC_060933.1 JAAKGM020000026.1 99.5 True indel: indel (> 5bp) 73481013 73481802 87038 86249 NC_060933.1 JAAKGM020000026.1 99.87 True relocation, inconsistency = 11019324 62460737 62461494 87990 87233 NC_060933.1 JAAKGM020000026.1 97.12 True relocation, inconsistency = -5069858 67526392 67527026 92182 91559 NC_060933.1 JAAKGM020000026.1 95.31 True relocation, inconsistency = -5825973 73350806 73351591 93761 92956 NC_060933.1 JAAKGM020000026.1 96.53 True local misassembly 73350008 73350509 98767 98266 NC_060933.1 JAAKGM020000026.1 98.8 True relocation, inconsistency = 50937 73296346 73297452 101517 100386 NC_060933.1 JAAKGM020000026.1 96.2 True relocation, inconsistency = 7000307 66295199 66295777 102357 101779 NC_060933.1 JAAKGM020000026.1 99.31 True relocation, inconsistency = -7051533 73344424 73345012 104665 104077 NC_060933.1 JAAKGM020000026.1 98.81 True local misassembly 73341326 73341911 107907 107312 NC_060933.1 JAAKGM020000026.1 97.48 True relocation, inconsistency = -51515 73386335 73389606 114308 111142 NC_060933.1 JAAKGM020000026.1 95.2 True relocation, inconsistency = -8426 73383195 73389606 125809 119463 NC_060933.1 JAAKGM020000026.1 96.89 True local misassembly 73384633 73389255 130407 125810 NC_060933.1 JAAKGM020000026.1 98.34 True relocation, inconsistency = 15199 73363091 73368422 136735 131419 NC_060933.1 JAAKGM020000026.1 98.77 True CONTIG JAAKGM020000026.1 137001 misassembled 125361659 125364337 28467 31147 NC_060925.1 JAAKGM020000027.1 98.43 True relocation, inconsistency = -344032 125020464 125022357 31306 33199 NC_060925.1 JAAKGM020000027.1 97.57 True translocation 25937673 25938533 35094 34234 NC_060943.1 JAAKGM020000027.1 95.7 True local misassembly 25935973 25936833 36793 35933 NC_060943.1 JAAKGM020000027.1 96.05 True translocation 125364805 125365376 41134 41704 NC_060925.1 JAAKGM020000027.1 97.84 True relocation, inconsistency = 2006175 123354643 123358629 45692 41705 NC_060925.1 JAAKGM020000027.1 98.6 True local misassembly 123350903 123353282 48071 45693 NC_060925.1 JAAKGM020000027.1 98.59 True relocation, inconsistency = 2010980 125364805 125367937 48614 51746 NC_060925.1 JAAKGM020000027.1 97.67 True local misassembly 125364805 125365784 54733 55711 NC_060925.1 JAAKGM020000027.1 97.7 True relocation, inconsistency = 1342400 124014609 124022404 63509 55712 NC_060925.1 JAAKGM020000027.1 97.6 True relocation, inconsistency = 1343018 125365423 125368637 63510 66734 NC_060925.1 JAAKGM020000027.1 97.58 True relocation, inconsistency = 853711 126222975 126224320 68310 66963 NC_060925.1 JAAKGM020000027.1 97.6 True relocation, inconsistency = 2141449 124077286 124081525 72551 68311 NC_060925.1 JAAKGM020000027.1 97.86 True relocation, inconsistency = 631880 123443265 123444299 74691 73658 NC_060925.1 JAAKGM020000027.1 98.42 True relocation, inconsistency = -649900 124087210 124093164 80644 74692 NC_060925.1 JAAKGM020000027.1 97.57 True relocation, inconsistency = 699529 123385300 123387680 83025 80645 NC_060925.1 JAAKGM020000027.1 97.37 True relocation, inconsistency = -60852 123444727 123445313 84449 83864 NC_060925.1 JAAKGM020000027.1 98.13 True relocation, inconsistency = -2831776 126273847 126275383 87103 85569 NC_060925.1 JAAKGM020000027.1 96.1 True relocation, inconsistency = 3953135 122317205 122318847 90609 88968 NC_060925.1 JAAKGM020000027.1 97.75 True relocation, inconsistency = -1716537 124029429 124032951 94923 91400 NC_060925.1 JAAKGM020000027.1 97.48 True translocation 26339876 26342043 98074 95911 NC_060943.1 JAAKGM020000027.1 95.53 True translocation 122319587 122321297 99784 98075 NC_060925.1 JAAKGM020000027.1 98.07 True relocation, inconsistency = -3953814 126271931 126272923 101253 100262 NC_060925.1 JAAKGM020000027.1 97.19 True relocation, inconsistency = 2238979 124029429 124032951 104777 101254 NC_060925.1 JAAKGM020000027.1 97.5 True relocation, inconsistency = 889008 124922463 124926373 105281 109190 NC_060925.1 JAAKGM020000027.1 96.81 True relocation, inconsistency = 267536 125194284 125197805 109565 113086 NC_060925.1 JAAKGM020000027.1 98.52 True local misassembly 125198146 125200029 113087 114970 NC_060925.1 JAAKGM020000027.1 99.26 True relocation, inconsistency = 163499 125363663 125366578 115105 118025 NC_060925.1 JAAKGM020000027.1 98.01 True relocation, inconsistency = 1853944 123505984 123508875 121760 118869 NC_060925.1 JAAKGM020000027.1 98.32 True relocation, inconsistency = 1412738 124921614 124925610 121761 125756 NC_060925.1 JAAKGM020000027.1 97.16 True relocation, inconsistency = 1140211 123777238 123781402 129917 125757 NC_060925.1 JAAKGM020000027.1 97.5 True relocation, inconsistency = 1582460 125363863 125366578 129918 132637 NC_060925.1 JAAKGM020000027.1 97.4 True relocation, inconsistency = 1433001 123921292 123927639 142209 135860 NC_060925.1 JAAKGM020000027.1 97.53 True relocation, inconsistency = -124057 124042037 124045348 145521 142210 NC_060925.1 JAAKGM020000027.1 97.23 True local misassembly 124039192 124041696 148026 145522 NC_060925.1 JAAKGM020000027.1 99.28 True local misassembly 124035411 124038851 151467 148027 NC_060925.1 JAAKGM020000027.1 99.04 True local misassembly 124040154 124040929 152502 151727 NC_060925.1 JAAKGM020000027.1 96.26 True indel: indel (<= 5bp) 124039369 124040153 153288 152504 NC_060925.1 JAAKGM020000027.1 99.04 True relocation, inconsistency = 19034 124014407 124020334 159216 153289 NC_060925.1 JAAKGM020000027.1 98.33 True relocation, inconsistency = 504412 123508586 123509994 160625 159217 NC_060925.1 JAAKGM020000027.1 98.84 True relocation, inconsistency = 754992 124265717 124266666 161356 162305 NC_060925.1 JAAKGM020000027.1 97.06 True relocation, inconsistency = 1205458 123056519 123059751 166048 162813 NC_060925.1 JAAKGM020000027.1 97.87 True relocation, inconsistency = -2807107 125862912 125863625 166762 166049 NC_060925.1 JAAKGM020000027.1 97.84 True relocation, inconsistency = -15975 125874951 125878886 170692 166763 NC_060925.1 JAAKGM020000027.1 97.18 True local misassembly 125867137 125868492 172048 170693 NC_060925.1 JAAKGM020000027.1 97.28 True translocation 29648605 29649249 172692 172049 NC_060943.1 JAAKGM020000027.1 97.35 True translocation 122818275 122821811 176533 172999 NC_060925.1 JAAKGM020000027.1 98.36 True relocation, inconsistency = 365411 122452092 122452755 177307 176642 NC_060925.1 JAAKGM020000027.1 98.12 True relocation, inconsistency = 281437 122166409 122170654 181547 177308 NC_060925.1 JAAKGM020000027.1 97.01 True relocation, inconsistency = 1994696 124165532 124168070 181729 184267 NC_060925.1 JAAKGM020000027.1 98.31 True local misassembly 124162520 124163079 184497 185056 NC_060925.1 JAAKGM020000027.1 99.11 True relocation, inconsistency = 2090874 126254072 126254607 185710 185175 NC_060925.1 JAAKGM020000027.1 96.46 True indel: indel (<= 5bp) 126253184 126254070 186597 185711 NC_060925.1 JAAKGM020000027.1 96.62 True local misassembly 126251934 126252843 187507 186598 NC_060925.1 JAAKGM020000027.1 98.62 True relocation, inconsistency = 2083863 124165532 124168070 187508 190046 NC_060925.1 JAAKGM020000027.1 98.31 True relocation, inconsistency = 1849012 126017083 126019205 192170 190047 NC_060925.1 JAAKGM020000027.1 97.85 True relocation, inconsistency = 8487 126006712 126008485 194054 192281 NC_060925.1 JAAKGM020000027.1 98.22 True relocation, inconsistency = 2150538 123851338 123856173 198885 194055 NC_060925.1 JAAKGM020000027.1 97.44 True relocation, inconsistency = 302383 124158778 124162630 199107 202959 NC_060925.1 JAAKGM020000027.1 98.03 True relocation, inconsistency = 1815962 125980130 125982819 207184 204497 NC_060925.1 JAAKGM020000027.1 97.92 True relocation, inconsistency = 781866 125197541 125198168 207280 207907 NC_060925.1 JAAKGM020000027.1 96.66 True indel: indel (<= 5bp) 125198170 125198905 207908 208643 NC_060925.1 JAAKGM020000027.1 98.73 True relocation, inconsistency = 2881101 122311538 122317068 214174 208644 NC_060925.1 JAAKGM020000027.1 98.5 True relocation, inconsistency = 2658237 124977267 124978304 216136 217173 NC_060925.1 JAAKGM020000027.1 99.61 True local misassembly 124978400 124982592 217608 221800 NC_060925.1 JAAKGM020000027.1 97.59 True relocation, inconsistency = 2660900 122311538 122317068 227762 222232 NC_060925.1 JAAKGM020000027.1 98.48 True relocation, inconsistency = -3932406 126236967 126239950 234739 231756 NC_060925.1 JAAKGM020000027.1 98.15 True relocation, inconsistency = 4075174 122157572 122161792 238957 234740 NC_060925.1 JAAKGM020000027.1 97.75 True relocation, inconsistency = -25839 122182675 122183248 239694 239120 NC_060925.1 JAAKGM020000027.1 97.02 True relocation, inconsistency = 266319 121913687 121916355 242364 239695 NC_060925.1 JAAKGM020000027.1 96.34 True translocation 25947663 25948563 243264 242365 NC_060943.1 JAAKGM020000027.1 96.09 True relocation, inconsistency = -59145 26006000 26006504 244072 243568 NC_060943.1 JAAKGM020000027.1 98.22 True translocation 125984049 125985528 247086 245606 NC_060925.1 JAAKGM020000027.1 97.23 True relocation, inconsistency = 119592 125861258 125862911 250281 248632 NC_060925.1 JAAKGM020000027.1 97.58 True relocation, inconsistency = -215806 126072950 126075556 254397 251789 NC_060925.1 JAAKGM020000027.1 97.93 True relocation, inconsistency = 84659 125985527 125986890 257157 255798 NC_060925.1 JAAKGM020000027.1 97.07 True local misassembly 125976532 125980688 261740 257579 NC_060925.1 JAAKGM020000027.1 97.5 True relocation, inconsistency = 3945191 122029163 122030589 263918 262492 NC_060925.1 JAAKGM020000027.1 97.13 True indel: indel (<= 5bp) 122028248 122028812 264835 264271 NC_060925.1 JAAKGM020000027.1 97.52 True indel: indel (<= 5bp) 122027454 122028243 265625 264836 NC_060925.1 JAAKGM020000027.1 97.22 True indel: indel (<= 5bp) 122026646 122027256 266431 265821 NC_060925.1 JAAKGM020000027.1 96.4 True local misassembly 122025753 122026305 266984 266432 NC_060925.1 JAAKGM020000027.1 97.47 True relocation, inconsistency = -3856864 125880633 125882104 268968 267497 NC_060925.1 JAAKGM020000027.1 97.96 True relocation, inconsistency = -228178 126107202 126108308 270577 269471 NC_060925.1 JAAKGM020000027.1 98.19 True relocation, inconsistency = 865330 125238814 125240818 271631 273635 NC_060925.1 JAAKGM020000027.1 96.51 True relocation, inconsistency = 1219933 124011882 124013875 280634 278641 NC_060925.1 JAAKGM020000027.1 98.39 True relocation, inconsistency = -11558 124017461 124023439 286614 280635 NC_060925.1 JAAKGM020000027.1 98.09 True relocation, inconsistency = 156343 123858008 123861117 289724 286615 NC_060925.1 JAAKGM020000027.1 98.56 True local misassembly 123857726 123861612 294424 290538 NC_060925.1 JAAKGM020000027.1 98.43 True relocation, inconsistency = 1980199 125842354 125845574 294967 298188 NC_060925.1 JAAKGM020000027.1 98.88 True relocation, inconsistency = -8834 125838169 125840302 299617 301753 NC_060925.1 JAAKGM020000027.1 98.53 True local misassembly 125842683 125844977 301754 304049 NC_060925.1 JAAKGM020000027.1 98.62 True relocation, inconsistency = 3502088 122337028 122340594 307617 304050 NC_060925.1 JAAKGM020000027.1 96.81 True relocation, inconsistency = -1711772 124047687 124048799 308730 307618 NC_060925.1 JAAKGM020000027.1 99.23 True relocation, inconsistency = -14277 124051517 124054413 319177 316281 NC_060925.1 JAAKGM020000027.1 98.72 True relocation, inconsistency = 1737949 122307025 122313405 325730 319340 NC_060925.1 JAAKGM020000027.1 98.45 True relocation, inconsistency = -1202261 123505915 123508188 329101 326828 NC_060925.1 JAAKGM020000027.1 98.11 True relocation, inconsistency = 31275 123473215 123474639 330526 329102 NC_060925.1 JAAKGM020000027.1 98.93 True local misassembly 123471979 123472697 331423 330705 NC_060925.1 JAAKGM020000027.1 97.91 True relocation, inconsistency = 98920 123369672 123372467 334811 332015 NC_060925.1 JAAKGM020000027.1 97.36 True relocation, inconsistency = 1990367 125362835 125364293 334812 336272 NC_060925.1 JAAKGM020000027.1 98.42 True relocation, inconsistency = 1973887 123385642 123388444 339579 336776 NC_060925.1 JAAKGM020000027.1 97.65 True relocation, inconsistency = -123739 123505915 123508188 343045 340772 NC_060925.1 JAAKGM020000027.1 98.15 True relocation, inconsistency = 151271 123352322 123353354 345367 344335 NC_060925.1 JAAKGM020000027.1 97.77 True indel: stretch of mismatches 123351315 123352005 346374 345684 NC_060925.1 JAAKGM020000027.1 98.84 True local misassembly 123350621 123351314 347408 346715 NC_060925.1 JAAKGM020000027.1 97.98 True local misassembly 123349945 123353207 351486 348224 NC_060925.1 JAAKGM020000027.1 98.31 True local misassembly 123348583 123353207 356929 352305 NC_060925.1 JAAKGM020000027.1 98.25 True relocation, inconsistency = 882070 122454180 122459462 369269 363980 NC_060925.1 JAAKGM020000027.1 97.96 True relocation, inconsistency = -1169296 123607796 123608332 384949 384413 NC_060925.1 JAAKGM020000027.1 95.9 True indel: indel (<= 5bp) 123605453 123607795 387293 384951 NC_060925.1 JAAKGM020000027.1 98.51 True local misassembly 123604204 123605416 388883 387671 NC_060925.1 JAAKGM020000027.1 99.09 True relocation, inconsistency = 1986161 125597850 125599425 395156 396731 NC_060925.1 JAAKGM020000027.1 98.98 True indel: indel (<= 5bp) 125599430 125600984 396732 398286 NC_060925.1 JAAKGM020000027.1 97.49 True local misassembly 125600985 125602410 398627 400052 NC_060925.1 JAAKGM020000027.1 98.88 True relocation, inconsistency = -231123 125371371 125372499 400136 401264 NC_060925.1 JAAKGM020000027.1 98.41 True indel: indel (<= 5bp) 125372500 125374553 401266 403319 NC_060925.1 JAAKGM020000027.1 98.15 True relocation, inconsistency = 2760296 122607255 122612203 408268 403320 NC_060925.1 JAAKGM020000027.1 97.6 True relocation, inconsistency = 3196937 125812105 125814719 411233 413847 NC_060925.1 JAAKGM020000027.1 97.97 True indel: indel (<= 5bp) 125814942 125816298 414075 415431 NC_060925.1 JAAKGM020000027.1 99.04 True relocation, inconsistency = 2129184 123683496 123685534 417694 415655 NC_060925.1 JAAKGM020000027.1 97.74 True relocation, inconsistency = -154996 123833816 123838491 422389 417695 NC_060925.1 JAAKGM020000027.1 98.49 True relocation, inconsistency = 1669654 122162993 122164161 423555 422390 NC_060925.1 JAAKGM020000027.1 97.37 True relocation, inconsistency = -953417 123113241 123114890 426723 425075 NC_060925.1 JAAKGM020000027.1 97.94 True translocation 29249058 29250359 430654 429353 NC_060943.1 JAAKGM020000027.1 97.08 True translocation 124091100 124091661 431216 430655 NC_060925.1 JAAKGM020000027.1 98.99 True local misassembly 124089609 124091099 433049 431559 NC_060925.1 JAAKGM020000027.1 98.73 True indel: indel (<= 5bp) 124088721 124089607 433936 433050 NC_060925.1 JAAKGM020000027.1 96.84 True relocation, inconsistency = 2101211 121984980 121986993 436467 434453 NC_060925.1 JAAKGM020000027.1 97.87 True relocation, inconsistency = -861909 122841792 122846046 441563 437310 NC_060925.1 JAAKGM020000027.1 98.4 True relocation, inconsistency = -1279088 124118904 124120879 443539 441564 NC_060925.1 JAAKGM020000027.1 98.96 True local misassembly 124115275 124118561 446827 443541 NC_060925.1 JAAKGM020000027.1 98.81 True relocation, inconsistency = 915368 125033930 125039952 446828 452852 NC_060925.1 JAAKGM020000027.1 97.89 True local misassembly 125034511 125039952 452853 458296 NC_060925.1 JAAKGM020000027.1 97.93 True relocation, inconsistency = 109139 125149259 125150993 458464 460198 NC_060925.1 JAAKGM020000027.1 98.79 True local misassembly 125150994 125151771 460539 461316 NC_060925.1 JAAKGM020000027.1 99.34 True relocation, inconsistency = -148569 125003203 125007658 461317 465775 NC_060925.1 JAAKGM020000027.1 97.09 True relocation, inconsistency = 888174 124106936 124109499 473869 471305 NC_060925.1 JAAKGM020000027.1 98.13 True relocation, inconsistency = 17008 124088721 124089607 475076 474190 NC_060925.1 JAAKGM020000027.1 99.21 True indel: indel (<= 5bp) 124087741 124088720 476058 475079 NC_060925.1 JAAKGM020000027.1 98.57 True local misassembly 124085416 124087399 478042 476059 NC_060925.1 JAAKGM020000027.1 98.79 True CONTIG JAAKGM020000027.1 533514 misassembled 41880983 41883359 2377 1 NC_060934.1 JAAKGM020000028.1 98.57 True local misassembly 41879936 41880642 3084 2378 NC_060934.1 JAAKGM020000028.1 95.76 True local misassembly 41878071 41879889 5289 3471 NC_060934.1 JAAKGM020000028.1 98.52 True local misassembly 41875749 41878070 7951 5630 NC_060934.1 JAAKGM020000028.1 98.36 True relocation, inconsistency = -30902 41896738 41906649 17864 7953 NC_060934.1 JAAKGM020000028.1 99.25 True indel: indel (<= 5bp) 41894237 41896736 20364 17865 NC_060934.1 JAAKGM020000028.1 99.28 True indel: indel (<= 5bp) 41893602 41894236 21001 20367 NC_060934.1 JAAKGM020000028.1 97.17 True local misassembly 41890161 41892581 23422 21002 NC_060934.1 JAAKGM020000028.1 98.88 True local misassembly 41888182 41888814 24723 24091 NC_060934.1 JAAKGM020000028.1 98.89 True local misassembly 41878342 41879756 27724 26310 NC_060934.1 JAAKGM020000028.1 98.81 True relocation, inconsistency = 32584 41842008 41845757 31474 27725 NC_060934.1 JAAKGM020000028.1 97.12 True indel: indel (<= 5bp) 41841457 41842007 32026 31476 NC_060934.1 JAAKGM020000028.1 98.37 True local misassembly 41839553 41840779 33253 32027 NC_060934.1 JAAKGM020000028.1 97.23 True local misassembly 41837795 41838698 34332 33429 NC_060934.1 JAAKGM020000028.1 96.68 True local misassembly 41836490 41837794 35977 34673 NC_060934.1 JAAKGM020000028.1 96.7 True local misassembly 41835276 41836489 37531 36318 NC_060934.1 JAAKGM020000028.1 97.45 True local misassembly 41833797 41835275 39689 38211 NC_060934.1 JAAKGM020000028.1 96.82 True local misassembly 41832844 41833796 41322 40370 NC_060934.1 JAAKGM020000028.1 96.96 True local misassembly 41828043 41829312 42730 41461 NC_060934.1 JAAKGM020000028.1 96.69 True indel: indel (<= 5bp) 41827251 41828041 43521 42731 NC_060934.1 JAAKGM020000028.1 97.22 True local misassembly 41826032 41827250 45079 43861 NC_060934.1 JAAKGM020000028.1 96.96 True local misassembly 41824560 41825691 46211 45080 NC_060934.1 JAAKGM020000028.1 96.02 True indel: stretch of mismatches 41822394 41824279 48377 46492 NC_060934.1 JAAKGM020000028.1 96.45 True indel: indel (<= 5bp) 41820822 41822392 49948 48378 NC_060934.1 JAAKGM020000028.1 96.88 True local misassembly 41823203 41823877 50963 50289 NC_060934.1 JAAKGM020000028.1 97.33 True indel: indel (<= 5bp) 41821505 41823201 52660 50964 NC_060934.1 JAAKGM020000028.1 95.88 True indel: indel (<= 5bp) 41818449 41821503 55715 52661 NC_060934.1 JAAKGM020000028.1 96.6 True relocation, inconsistency = 14601 41803302 41803847 56261 55716 NC_060934.1 JAAKGM020000028.1 98.17 True indel: indel (<= 5bp) 41802579 41803301 56985 56263 NC_060934.1 JAAKGM020000028.1 98.34 True indel: indel (<= 5bp) 41801969 41802577 57594 56986 NC_060934.1 JAAKGM020000028.1 98.69 True indel: indel (<= 5bp) 41800481 41801968 59083 57596 NC_060934.1 JAAKGM020000028.1 98.45 True indel: indel (<= 5bp) 41799099 41800480 60466 59085 NC_060934.1 JAAKGM020000028.1 97.97 True local misassembly 41803302 41803847 61012 60467 NC_060934.1 JAAKGM020000028.1 98.17 True indel: indel (<= 5bp) 41802579 41803301 61736 61014 NC_060934.1 JAAKGM020000028.1 98.2 True indel: indel (<= 5bp) 41801969 41802577 62345 61737 NC_060934.1 JAAKGM020000028.1 98.69 True indel: indel (<= 5bp) 41800481 41801968 63834 62347 NC_060934.1 JAAKGM020000028.1 98.66 True indel: indel (<= 5bp) 41799099 41800480 65217 63836 NC_060934.1 JAAKGM020000028.1 97.83 True local misassembly 41803302 41803847 65763 65218 NC_060934.1 JAAKGM020000028.1 98.35 True indel: indel (<= 5bp) 41802579 41803301 66487 65765 NC_060934.1 JAAKGM020000028.1 98.2 True indel: indel (<= 5bp) 41801969 41802577 67096 66488 NC_060934.1 JAAKGM020000028.1 99.01 True indel: indel (<= 5bp) 41801458 41801968 67608 67098 NC_060934.1 JAAKGM020000028.1 98.63 True local misassembly 41803849 41806208 69969 67610 NC_060934.1 JAAKGM020000028.1 96.48 True local misassembly 41809373 41810298 70895 69970 NC_060934.1 JAAKGM020000028.1 96.76 True local misassembly 41801969 41802577 71847 71239 NC_060934.1 JAAKGM020000028.1 99.01 True indel: indel (<= 5bp) 41800481 41801968 73336 71849 NC_060934.1 JAAKGM020000028.1 98.19 True indel: indel (<= 5bp) 41799099 41800480 74719 73338 NC_060934.1 JAAKGM020000028.1 97.97 True local misassembly 41803302 41803847 75265 74720 NC_060934.1 JAAKGM020000028.1 97.8 True indel: indel (<= 5bp) 41801969 41803301 76599 75267 NC_060934.1 JAAKGM020000028.1 98.05 True indel: indel (<= 5bp) 41800481 41801968 78088 76601 NC_060934.1 JAAKGM020000028.1 98.59 True indel: indel (<= 5bp) 41799099 41800480 79471 78090 NC_060934.1 JAAKGM020000028.1 98.05 True local misassembly 41803302 41803847 80017 79472 NC_060934.1 JAAKGM020000028.1 97.99 True indel: indel (<= 5bp) 41802579 41803301 80741 80019 NC_060934.1 JAAKGM020000028.1 98.2 True indel: indel (<= 5bp) 41801969 41802577 81350 80742 NC_060934.1 JAAKGM020000028.1 98.36 True indel: indel (<= 5bp) 41800796 41801968 82524 81352 NC_060934.1 JAAKGM020000028.1 97.78 True local misassembly 41803302 41803847 83070 82525 NC_060934.1 JAAKGM020000028.1 98.35 True indel: indel (<= 5bp) 41802579 41803301 83794 83072 NC_060934.1 JAAKGM020000028.1 97.79 True indel: indel (<= 5bp) 41801969 41802577 84403 83795 NC_060934.1 JAAKGM020000028.1 99.01 True indel: indel (<= 5bp) 41800796 41801968 85577 84405 NC_060934.1 JAAKGM020000028.1 97.78 True local misassembly 41795157 41795702 86123 85578 NC_060934.1 JAAKGM020000028.1 98.35 True indel: indel (<= 5bp) 41794434 41795156 86847 86125 NC_060934.1 JAAKGM020000028.1 98.48 True indel: indel (<= 5bp) 41793824 41794432 87456 86848 NC_060934.1 JAAKGM020000028.1 98.69 True indel: indel (<= 5bp) 41792336 41793823 88945 87458 NC_060934.1 JAAKGM020000028.1 98.52 True indel: indel (<= 5bp) 41790271 41792335 91011 88947 NC_060934.1 JAAKGM020000028.1 97.72 True local misassembly 41790304 41791628 92336 91012 NC_060934.1 JAAKGM020000028.1 97.96 True indel: indel (<= 5bp) 41788940 41790302 93699 92337 NC_060934.1 JAAKGM020000028.1 98.0 True local misassembly 41790145 41792335 95890 93700 NC_060934.1 JAAKGM020000028.1 97.95 True indel: indel (<= 5bp) 41788190 41790143 97844 95891 NC_060934.1 JAAKGM020000028.1 98.62 True local misassembly 41783612 41784792 99025 97845 NC_060934.1 JAAKGM020000028.1 98.22 True local misassembly 41779052 41780425 100531 99158 NC_060934.1 JAAKGM020000028.1 98.33 True local misassembly 41771089 41773624 103067 100532 NC_060934.1 JAAKGM020000028.1 98.82 True local misassembly 41757523 41766000 111545 103068 NC_060934.1 JAAKGM020000028.1 99.0 True indel: indel (<= 5bp) 41754763 41757522 114306 111547 NC_060934.1 JAAKGM020000028.1 98.22 True indel: indel (<= 5bp) 41753517 41754762 115554 114309 NC_060934.1 JAAKGM020000028.1 97.51 True local misassembly 41740903 41745723 122403 117583 NC_060934.1 JAAKGM020000028.1 98.63 True indel: indel (<= 5bp) 41738527 41740901 124778 122404 NC_060934.1 JAAKGM020000028.1 98.95 True indel: indel (<= 5bp) 41734519 41738526 128787 124780 NC_060934.1 JAAKGM020000028.1 98.35 True local misassembly 41735862 41738622 133550 130791 NC_060934.1 JAAKGM020000028.1 98.33 True relocation, inconsistency = 10518 41722584 41724346 136310 134548 NC_060934.1 JAAKGM020000028.1 98.24 True local misassembly 41721422 41722243 137132 136311 NC_060934.1 JAAKGM020000028.1 98.42 True relocation, inconsistency = -11197 41730183 41731471 139568 138280 NC_060934.1 JAAKGM020000028.1 98.6 True indel: indel (<= 5bp) 41729436 41730182 140316 139570 NC_060934.1 JAAKGM020000028.1 98.26 True local misassembly 41727061 41729096 142352 140317 NC_060934.1 JAAKGM020000028.1 97.84 True relocation, inconsistency = 89893 41630523 41635687 148997 143833 NC_060934.1 JAAKGM020000028.1 97.87 True relocation, inconsistency = 185984 41443297 41444538 150240 148998 NC_060934.1 JAAKGM020000028.1 97.28 True relocation, inconsistency = -11195 41450099 41454491 154632 150241 NC_060934.1 JAAKGM020000028.1 97.61 True relocation, inconsistency = 90778 41356948 41359320 157001 154633 NC_060934.1 JAAKGM020000028.1 97.85 True relocation, inconsistency = 517916 40832921 40838891 163112 157142 NC_060934.1 JAAKGM020000028.1 97.92 True local misassembly 40833504 40838009 167619 163113 NC_060934.1 JAAKGM020000028.1 97.55 True relocation, inconsistency = -619215 41450340 41452718 169996 167620 NC_060934.1 JAAKGM020000028.1 97.52 True relocation, inconsistency = -198882 41643793 41649221 175425 169997 NC_060934.1 JAAKGM020000028.1 98.23 True relocation, inconsistency = -16625 41656446 41660216 179397 175627 NC_060934.1 JAAKGM020000028.1 96.87 True fake: not a misassembly (possible transposable element) 41354474 41355831 180850 179493 NC_060934.1 JAAKGM020000028.1 97.57 True fake: not a misassembly (possible transposable element) 41656379 41659090 183876 181165 NC_060934.1 JAAKGM020000028.1 96.83 True indel: stretch of mismatches 41655090 41656052 185165 184203 NC_060934.1 JAAKGM020000028.1 98.34 True relocation, inconsistency = 304934 41349065 41349695 186256 185626 NC_060934.1 JAAKGM020000028.1 97.49 True relocation, inconsistency = -371405 41719623 41720469 187103 186257 NC_060934.1 JAAKGM020000028.1 98.17 True relocation, inconsistency = 87176 41630655 41632446 188891 187104 NC_060934.1 JAAKGM020000028.1 96.82 True relocation, inconsistency = -7122 41635503 41637705 191165 188963 NC_060934.1 JAAKGM020000028.1 96.1 True local misassembly 41632285 41635502 194722 191505 NC_060934.1 JAAKGM020000028.1 98.57 True relocation, inconsistency = -126866 41757933 41758825 195940 195048 NC_060934.1 JAAKGM020000028.1 98.32 True relocation, inconsistency = 264680 41488434 41493208 200758 195985 NC_060934.1 JAAKGM020000028.1 97.47 True relocation, inconsistency = -182589 41669717 41670803 202063 200978 NC_060934.1 JAAKGM020000028.1 97.42 True local misassembly 41662143 41662936 202857 202064 NC_060934.1 JAAKGM020000028.1 96.69 True indel: indel (<= 5bp) 41660243 41662142 204758 202859 NC_060934.1 JAAKGM020000028.1 98.32 True indel: indel (<= 5bp) 41659491 41660242 205511 204760 NC_060934.1 JAAKGM020000028.1 97.61 True local misassembly 41657455 41659090 207210 205575 NC_060934.1 JAAKGM020000028.1 97.07 True indel: indel (<= 5bp) 41654995 41657143 209668 207523 NC_060934.1 JAAKGM020000028.1 97.4 True indel: indel (<= 5bp) 41651960 41654651 212701 210011 NC_060934.1 JAAKGM020000028.1 97.77 True relocation, inconsistency = -19334 41662877 41664541 221117 219454 NC_060934.1 JAAKGM020000028.1 97.06 True fake: not a misassembly (possible transposable element) 41609615 41615367 226871 221118 NC_060934.1 JAAKGM020000028.1 97.62 True fake: not a misassembly (possible transposable element) 41656733 41659839 230998 227889 NC_060934.1 JAAKGM020000028.1 97.04 True local misassembly 41654995 41660797 236802 230999 NC_060934.1 JAAKGM020000028.1 97.12 True local misassembly 41654995 41657706 239512 236803 NC_060934.1 JAAKGM020000028.1 96.42 True indel: indel (<= 5bp) 41651955 41654651 242549 239854 NC_060934.1 JAAKGM020000028.1 97.85 True relocation, inconsistency = -10175 41654670 41660216 250008 244463 NC_060934.1 JAAKGM020000028.1 97.23 True local misassembly 41658443 41659090 250984 250337 NC_060934.1 JAAKGM020000028.1 97.99 True local misassembly 41657409 41658104 251680 250985 NC_060934.1 JAAKGM020000028.1 95.83 True indel: indel (<= 5bp) 41656448 41657408 252642 251682 NC_060934.1 JAAKGM020000028.1 96.88 True relocation, inconsistency = 22064 41630637 41634087 256386 252939 NC_060934.1 JAAKGM020000028.1 97.71 True relocation, inconsistency = 222633 41405211 41407416 259183 256974 NC_060934.1 JAAKGM020000028.1 97.42 True relocation, inconsistency = -88212 41486417 41493422 266189 259184 NC_060934.1 JAAKGM020000028.1 97.12 True relocation, inconsistency = -178860 41662160 41664541 269307 266925 NC_060934.1 JAAKGM020000028.1 97.06 True relocation, inconsistency = 25789 41631715 41634087 273962 271591 NC_060934.1 JAAKGM020000028.1 97.85 True relocation, inconsistency = 10520 41619784 41621006 275373 274151 NC_060934.1 JAAKGM020000028.1 97.38 True local misassembly 41618381 41619445 276438 275374 NC_060934.1 JAAKGM020000028.1 98.31 True indel: indel (<= 5bp) 41617609 41618375 277205 276439 NC_060934.1 JAAKGM020000028.1 97.13 True indel: indel (<= 5bp) 41615650 41617607 279163 277206 NC_060934.1 JAAKGM020000028.1 97.96 True indel: stretch of mismatches 41614879 41615571 279934 279242 NC_060934.1 JAAKGM020000028.1 98.27 True indel: indel (<= 5bp) 41613830 41614612 280986 280204 NC_060934.1 JAAKGM020000028.1 97.7 True indel: indel (<= 5bp) 41611972 41613828 282843 280987 NC_060934.1 JAAKGM020000028.1 97.47 True indel: indel (<= 5bp) 41611271 41611971 283546 282846 NC_060934.1 JAAKGM020000028.1 97.72 True relocation, inconsistency = -36655 41643803 41647925 287667 283547 NC_060934.1 JAAKGM020000028.1 98.08 True relocation, inconsistency = 1940525 39698855 39702951 292089 287994 NC_060934.1 JAAKGM020000028.1 97.71 True relocation, inconsistency = -1354567 41049189 41053079 296322 292432 NC_060934.1 JAAKGM020000028.1 98.33 True indel: indel (<= 5bp) 41048659 41049186 296850 296323 NC_060934.1 JAAKGM020000028.1 98.45 True relocation, inconsistency = -600556 41644567 41649214 301498 296851 NC_060934.1 JAAKGM020000028.1 98.09 True local misassembly 41644801 41645585 302281 301499 NC_060934.1 JAAKGM020000028.1 98.08 True relocation, inconsistency = 304591 41336907 41340209 305584 302282 NC_060934.1 JAAKGM020000028.1 97.37 True relocation, inconsistency = -68388 41404292 41405236 306587 305643 NC_060934.1 JAAKGM020000028.1 97.57 True relocation, inconsistency = 400337 40998452 41001559 312090 308983 NC_060934.1 JAAKGM020000028.1 98.17 True relocation, inconsistency = -645364 41640060 41643815 315846 312091 NC_060934.1 JAAKGM020000028.1 97.15 True relocation, inconsistency = 1928305 39710623 39711572 316978 316029 NC_060934.1 JAAKGM020000028.1 96.11 True local misassembly 39709122 39709930 317799 316991 NC_060934.1 JAAKGM020000028.1 97.16 True local misassembly 39708246 39708783 318337 317800 NC_060934.1 JAAKGM020000028.1 97.96 True relocation, inconsistency = -1937471 41640967 41644229 323085 319825 NC_060934.1 JAAKGM020000028.1 97.24 True local misassembly 41640060 41643774 327386 323672 NC_060934.1 JAAKGM020000028.1 97.15 True relocation, inconsistency = 1941204 39697724 39698673 328518 327569 NC_060934.1 JAAKGM020000028.1 95.89 True local misassembly 39695348 39695885 329877 329340 NC_060934.1 JAAKGM020000028.1 97.4 True local misassembly 39693312 39693849 331914 331377 NC_060934.1 JAAKGM020000028.1 97.77 True local misassembly 39689163 39689779 337081 336465 NC_060934.1 JAAKGM020000028.1 97.89 True local misassembly 39686796 39688012 339447 338232 NC_060934.1 JAAKGM020000028.1 98.03 True relocation, inconsistency = -24439 39709122 39709930 341560 340752 NC_060934.1 JAAKGM020000028.1 97.53 True local misassembly 39708246 39708783 342098 341561 NC_060934.1 JAAKGM020000028.1 97.58 True relocation, inconsistency = 52950 39653033 39653808 344361 343586 NC_060934.1 JAAKGM020000028.1 96.52 True local misassembly 39651080 39651771 346314 345623 NC_060934.1 JAAKGM020000028.1 97.11 True relocation, inconsistency = -53631 39700703 39701328 350322 349697 NC_060934.1 JAAKGM020000028.1 98.24 True relocation, inconsistency = 11541 39686636 39688012 352847 351472 NC_060934.1 JAAKGM020000028.1 97.68 True relocation, inconsistency = -1956141 41637497 41640835 358124 354789 NC_060934.1 JAAKGM020000028.1 97.78 True relocation, inconsistency = 103868 41526796 41532869 364955 358884 NC_060934.1 JAAKGM020000028.1 97.2 True relocation, inconsistency = 1808825 39715489 39716147 367437 366779 NC_060934.1 JAAKGM020000028.1 96.66 True relocation, inconsistency = -1928983 41637497 41640835 374412 371074 NC_060934.1 JAAKGM020000028.1 97.81 True local misassembly 41637497 41640835 379504 376166 NC_060934.1 JAAKGM020000028.1 97.81 True fake: not a misassembly (possible transposable element) 41354570 41355366 381257 380461 NC_060934.1 JAAKGM020000028.1 97.53 True fake: not a misassembly (possible transposable element) 41637497 41640835 384596 381258 NC_060934.1 JAAKGM020000028.1 97.78 True local misassembly 41637497 41640835 389688 386350 NC_060934.1 JAAKGM020000028.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 391441 390645 NC_060934.1 JAAKGM020000028.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 394780 391442 NC_060934.1 JAAKGM020000028.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 396533 395737 NC_060934.1 JAAKGM020000028.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 399872 396534 NC_060934.1 JAAKGM020000028.1 97.75 True relocation, inconsistency = 281174 41354558 41355366 401637 400829 NC_060934.1 JAAKGM020000028.1 97.53 True local misassembly 41353682 41354219 402175 401638 NC_060934.1 JAAKGM020000028.1 97.21 True relocation, inconsistency = 1610819 39740261 39741354 404776 403684 NC_060934.1 JAAKGM020000028.1 97.99 True local misassembly 39735170 39739313 409864 405724 NC_060934.1 JAAKGM020000028.1 97.2 True relocation, inconsistency = 32579 39700553 39701328 411902 411127 NC_060934.1 JAAKGM020000028.1 96.52 True relocation, inconsistency = -14936 39713536 39714227 413855 413164 NC_060934.1 JAAKGM020000028.1 97.54 True relocation, inconsistency = -1635250 41344049 41346061 418591 416580 NC_060934.1 JAAKGM020000028.1 97.72 True relocation, inconsistency = -296787 41637497 41640835 421930 418592 NC_060934.1 JAAKGM020000028.1 97.87 True relocation, inconsistency = 1913033 39722711 39723507 423683 422887 NC_060934.1 JAAKGM020000028.1 97.9 True relocation, inconsistency = -1921519 41642181 41644229 425732 423684 NC_060934.1 JAAKGM020000028.1 97.59 True relocation, inconsistency = 38350 41596797 41603830 432766 425733 NC_060934.1 JAAKGM020000028.1 97.66 True relocation, inconsistency = 201085 41393926 41395642 434552 432836 NC_060934.1 JAAKGM020000028.1 97.2 True relocation, inconsistency = 37331 41354570 41355366 436577 435781 NC_060934.1 JAAKGM020000028.1 97.65 True relocation, inconsistency = -289660 41641173 41644229 439633 436578 NC_060934.1 JAAKGM020000028.1 97.45 True relocation, inconsistency = 225680 41413661 41415492 441464 439634 NC_060934.1 JAAKGM020000028.1 97.71 True relocation, inconsistency = -235868 41644567 41648622 446422 442371 NC_060934.1 JAAKGM020000028.1 97.73 True local misassembly 41643793 41648395 451949 447347 NC_060934.1 JAAKGM020000028.1 97.98 True local misassembly 41643793 41647187 455342 451950 NC_060934.1 JAAKGM020000028.1 98.22 True relocation, inconsistency = 591728 41051227 41052064 456180 455343 NC_060934.1 JAAKGM020000028.1 98.27 True indel: indel (<= 5bp) 41049189 41051224 458216 456181 NC_060934.1 JAAKGM020000028.1 98.48 True indel: indel (<= 5bp) 41048666 41049186 458737 458217 NC_060934.1 JAAKGM020000028.1 98.97 True local misassembly 41051227 41053079 460590 458738 NC_060934.1 JAAKGM020000028.1 98.38 True indel: indel (<= 5bp) 41049189 41051224 462626 460591 NC_060934.1 JAAKGM020000028.1 98.53 True indel: indel (<= 5bp) 41048666 41049186 463147 462627 NC_060934.1 JAAKGM020000028.1 98.97 True local misassembly 41041616 41044252 465782 463148 NC_060934.1 JAAKGM020000028.1 98.52 True relocation, inconsistency = -20714 41056559 41062329 471550 465783 NC_060934.1 JAAKGM020000028.1 98.41 True relocation, inconsistency = -511623 41563686 41568125 476042 471607 NC_060934.1 JAAKGM020000028.1 97.75 True relocation, inconsistency = 500757 41056533 41062928 482433 476043 NC_060934.1 JAAKGM020000028.1 98.28 True relocation, inconsistency = 244354 40807116 40808134 487494 486478 NC_060934.1 JAAKGM020000028.1 98.7 True relocation, inconsistency = -841507 41645566 41648622 490547 487495 NC_060934.1 JAAKGM020000028.1 98.3 True local misassembly 41644567 41648622 494599 490548 NC_060934.1 JAAKGM020000028.1 97.83 True relocation, inconsistency = 582217 41058254 41062329 498687 494620 NC_060934.1 JAAKGM020000028.1 98.12 True local misassembly 41056533 41062329 504493 498688 NC_060934.1 JAAKGM020000028.1 98.06 True relocation, inconsistency = -590369 41644808 41646901 506587 504494 NC_060934.1 JAAKGM020000028.1 98.12 True relocation, inconsistency = 600555 41039587 41044252 511249 506588 NC_060934.1 JAAKGM020000028.1 98.46 True relocation, inconsistency = -609045 41646585 41648622 513294 511259 NC_060934.1 JAAKGM020000028.1 98.1 True relocation, inconsistency = 584255 41056533 41062329 519083 513295 NC_060934.1 JAAKGM020000028.1 98.43 True local misassembly 41056533 41062329 525193 519401 NC_060934.1 JAAKGM020000028.1 98.27 True relocation, inconsistency = 1336580 39718878 39719922 526268 525224 NC_060934.1 JAAKGM020000028.1 98.0 True relocation, inconsistency = -1344051 41061311 41062928 527882 526269 NC_060934.1 JAAKGM020000028.1 98.39 True local misassembly 41055679 41062329 534523 527883 NC_060934.1 JAAKGM020000028.1 98.33 True relocation, inconsistency = -592407 41644567 41648085 538040 534524 NC_060934.1 JAAKGM020000028.1 97.95 True fake: not a misassembly (possible transposable element) 39718289 39719922 540426 538793 NC_060934.1 JAAKGM020000028.1 97.9 True fake: not a misassembly (possible transposable element) 41644567 41647613 543465 540427 NC_060934.1 JAAKGM020000028.1 98.13 True relocation, inconsistency = 579840 41057062 41062496 551125 545696 NC_060934.1 JAAKGM020000028.1 98.24 True local misassembly 41056533 41062496 557081 551126 NC_060934.1 JAAKGM020000028.1 98.41 True local misassembly 41057235 41058570 558417 557082 NC_060934.1 JAAKGM020000028.1 98.36 True relocation, inconsistency = -591388 41644567 41648622 562467 558418 NC_060934.1 JAAKGM020000028.1 98.18 True local misassembly 41644567 41648622 566537 562488 NC_060934.1 JAAKGM020000028.1 98.08 True local misassembly 41644567 41648622 570603 566558 NC_060934.1 JAAKGM020000028.1 98.0 True local misassembly 41644567 41648622 574675 570624 NC_060934.1 JAAKGM020000028.1 98.15 True local misassembly 41644567 41646604 576709 574676 NC_060934.1 JAAKGM020000028.1 98.25 True fake: not a misassembly (possible transposable element) 41015144 41019210 580792 576730 NC_060934.1 JAAKGM020000028.1 98.16 True fake: not a misassembly (possible transposable element) 41644567 41645574 581800 580793 NC_060934.1 JAAKGM020000028.1 98.03 True fake: not a misassembly (possible transposable element) 41662160 41662770 583545 582935 NC_060934.1 JAAKGM020000028.1 97.22 True fake: not a misassembly (possible transposable element) 41643793 41647825 587667 583635 NC_060934.1 JAAKGM020000028.1 97.89 True relocation, inconsistency = 581879 41061076 41061913 588505 587668 NC_060934.1 JAAKGM020000028.1 98.17 True indel: indel (<= 5bp) 41058413 41061073 591166 588506 NC_060934.1 JAAKGM020000028.1 98.61 True relocation, inconsistency = -580184 41636033 41638545 593727 591218 NC_060934.1 JAAKGM020000028.1 97.37 True relocation, inconsistency = -15277 41644567 41647586 600466 597451 NC_060934.1 JAAKGM020000028.1 98.34 True relocation, inconsistency = 582217 41056533 41062329 606277 600487 NC_060934.1 JAAKGM020000028.1 98.36 True relocation, inconsistency = -590369 41644769 41646901 608408 606278 NC_060934.1 JAAKGM020000028.1 98.05 True local misassembly 41643793 41647825 612441 608409 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = 581879 41061076 41061913 613279 612442 NC_060934.1 JAAKGM020000028.1 98.17 True indel: indel (<= 5bp) 41058413 41061073 615940 613280 NC_060934.1 JAAKGM020000028.1 98.65 True relocation, inconsistency = -580184 41635971 41638545 618563 615992 NC_060934.1 JAAKGM020000028.1 97.36 True relocation, inconsistency = 613458 41017957 41019210 623119 621866 NC_060934.1 JAAKGM020000028.1 98.25 True indel: indel (<= 5bp) 41016293 41017954 624781 623120 NC_060934.1 JAAKGM020000028.1 98.5 True local misassembly 41015144 41015661 625588 625071 NC_060934.1 JAAKGM020000028.1 98.46 True relocation, inconsistency = -7129 41015144 41019210 632713 628651 NC_060934.1 JAAKGM020000028.1 98.52 True relocation, inconsistency = -630431 41644719 41645574 633569 632714 NC_060934.1 JAAKGM020000028.1 98.22 True local misassembly 41636044 41639628 637151 633570 NC_060934.1 JAAKGM020000028.1 97.6 True relocation, inconsistency = 619910 41015144 41015661 638141 637624 NC_060934.1 JAAKGM020000028.1 97.88 True relocation, inconsistency = -345866 41357186 41358934 641965 640217 NC_060934.1 JAAKGM020000028.1 97.92 True relocation, inconsistency = 294257 41057552 41062928 647340 641966 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = 1337599 39718878 39719922 648415 647371 NC_060934.1 JAAKGM020000028.1 97.94 True relocation, inconsistency = -1325375 41039587 41044252 653077 648416 NC_060934.1 JAAKGM020000028.1 98.39 True relocation, inconsistency = 22405 41016334 41017181 653925 653078 NC_060934.1 JAAKGM020000028.1 98.5 True relocation, inconsistency = 147452 40867013 40868881 655794 653926 NC_060934.1 JAAKGM020000028.1 98.45 True relocation, inconsistency = 29352 40834267 40837634 659189 655821 NC_060934.1 JAAKGM020000028.1 97.57 True relocation, inconsistency = 1134987 39696275 39697504 662195 660965 NC_060934.1 JAAKGM020000028.1 97.32 True relocation, inconsistency = -1932047 41626485 41627263 664032 663254 NC_060934.1 JAAKGM020000028.1 97.6 True relocation, inconsistency = 582232 41040301 41044252 667980 664033 NC_060934.1 JAAKGM020000028.1 98.48 True relocation, inconsistency = -613455 41644567 41648622 677163 673114 NC_060934.1 JAAKGM020000028.1 98.57 True local misassembly 41644567 41647623 680216 677164 NC_060934.1 JAAKGM020000028.1 98.5 True local misassembly 41643793 41647044 684047 680796 NC_060934.1 JAAKGM020000028.1 98.65 True local misassembly 41636044 41639796 689417 685668 NC_060934.1 JAAKGM020000028.1 98.0 True relocation, inconsistency = 572715 41056556 41062329 696186 690417 NC_060934.1 JAAKGM020000028.1 98.49 True relocation, inconsistency = -293243 41347682 41348726 698303 697259 NC_060934.1 JAAKGM020000028.1 97.78 True relocation, inconsistency = 323458 41015144 41024223 707375 698304 NC_060934.1 JAAKGM020000028.1 98.27 True relocation, inconsistency = -630431 41644567 41645574 708383 707376 NC_060934.1 JAAKGM020000028.1 98.32 True relocation, inconsistency = 1961232 39681339 39682584 710379 709134 NC_060934.1 JAAKGM020000028.1 97.03 True relocation, inconsistency = -39376 39718289 39719922 712805 711172 NC_060934.1 JAAKGM020000028.1 98.05 True relocation, inconsistency = -1929325 41644830 41647613 715587 712806 NC_060934.1 JAAKGM020000028.1 98.12 True local misassembly 41635971 41640417 720031 715588 NC_060934.1 JAAKGM020000028.1 97.59 True relocation, inconsistency = -20026 41644567 41648622 731455 727406 NC_060934.1 JAAKGM020000028.1 98.3 True local misassembly 41644567 41647623 734508 731456 NC_060934.1 JAAKGM020000028.1 98.37 True local misassembly 41644808 41646436 739018 737390 NC_060934.1 JAAKGM020000028.1 98.0 True relocation, inconsistency = 591728 41048414 41053079 743684 739019 NC_060934.1 JAAKGM020000028.1 98.33 True local misassembly 41048666 41052827 747846 743685 NC_060934.1 JAAKGM020000028.1 98.2 True local misassembly 41048482 41053079 752444 747847 NC_060934.1 JAAKGM020000028.1 98.22 True local misassembly 41046969 41048073 753616 752512 NC_060934.1 JAAKGM020000028.1 97.2 True relocation, inconsistency = -15960 41057290 41062928 759255 753617 NC_060934.1 JAAKGM020000028.1 98.33 True local misassembly 41049682 41052873 762447 759256 NC_060934.1 JAAKGM020000028.1 98.29 True relocation, inconsistency = 210416 40832788 40839265 768927 762448 NC_060934.1 JAAKGM020000028.1 97.56 True relocation, inconsistency = -526062 41354558 41358849 773219 768928 NC_060934.1 JAAKGM020000028.1 97.7 True relocation, inconsistency = -293055 41643793 41647612 777039 773220 NC_060934.1 JAAKGM020000028.1 98.04 True relocation, inconsistency = 620584 41020623 41023208 779625 777040 NC_060934.1 JAAKGM020000028.1 98.33 True relocation, inconsistency = -628731 41644801 41646594 784176 782385 NC_060934.1 JAAKGM020000028.1 98.03 True relocation, inconsistency = 591728 41048414 41053072 788835 784177 NC_060934.1 JAAKGM020000028.1 98.24 True local misassembly 41046969 41048073 789940 788836 NC_060934.1 JAAKGM020000028.1 97.29 True local misassembly 41048414 41053079 794606 789941 NC_060934.1 JAAKGM020000028.1 98.24 True local misassembly 41046763 41048073 795917 794607 NC_060934.1 JAAKGM020000028.1 97.41 True relocation, inconsistency = 197859 40846476 40848842 798345 795979 NC_060934.1 JAAKGM020000028.1 97.63 True relocation, inconsistency = -501967 41343274 41348442 803516 798346 NC_060934.1 JAAKGM020000028.1 97.49 True relocation, inconsistency = 289852 41048414 41053079 808524 803859 NC_060934.1 JAAKGM020000028.1 98.18 True local misassembly 41046717 41048073 809881 808525 NC_060934.1 JAAKGM020000028.1 97.13 True relocation, inconsistency = -601915 41643793 41647925 814720 810588 NC_060934.1 JAAKGM020000028.1 98.02 True relocation, inconsistency = 620584 41020623 41023208 817306 814721 NC_060934.1 JAAKGM020000028.1 98.44 True local misassembly 41022893 41024223 820807 819477 NC_060934.1 JAAKGM020000028.1 98.14 True relocation, inconsistency = -400669 41420827 41423561 823545 820808 NC_060934.1 JAAKGM020000028.1 97.41 True relocation, inconsistency = -222287 41641355 41642953 825304 823706 NC_060934.1 JAAKGM020000028.1 97.53 True relocation, inconsistency = 7467 41630669 41633887 828496 825305 NC_060934.1 JAAKGM020000028.1 96.03 True relocation, inconsistency = 267259 41354558 41360606 837319 831300 NC_060934.1 JAAKGM020000028.1 97.01 True relocation, inconsistency = 688252 40660535 40665277 843063 838348 NC_060934.1 JAAKGM020000028.1 97.51 True relocation, inconsistency = -989117 41640060 41643190 852653 849525 NC_060934.1 JAAKGM020000028.1 97.7 True relocation, inconsistency = 1878081 39761281 39761978 853351 852654 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = -1416014 41176023 41177294 854623 853352 NC_060934.1 JAAKGM020000028.1 97.61 True relocation, inconsistency = -470553 41644529 41646575 856670 854624 NC_060934.1 JAAKGM020000028.1 98.58 True relocation, inconsistency = 1065825 40574027 40578687 861347 856687 NC_060934.1 JAAKGM020000028.1 97.66 True relocation, inconsistency = -449991 41020623 41024017 864742 861348 NC_060934.1 JAAKGM020000028.1 98.47 True relocation, inconsistency = -626355 41645566 41646594 866154 865126 NC_060934.1 JAAKGM020000028.1 98.36 True relocation, inconsistency = 70938 41568146 41574627 872636 866155 NC_060934.1 JAAKGM020000028.1 97.69 True local misassembly 41562671 41566108 876071 872637 NC_060934.1 JAAKGM020000028.1 97.6 True relocation, inconsistency = -70263 41630673 41632933 878332 876072 NC_060934.1 JAAKGM020000028.1 96.49 True relocation, inconsistency = 1972435 39656183 39657468 880387 879102 NC_060934.1 JAAKGM020000028.1 98.06 True relocation, inconsistency = -1992460 41645851 41647613 883179 881417 NC_060934.1 JAAKGM020000028.1 98.04 True relocation, inconsistency = 285246 41353795 41360604 889989 883180 NC_060934.1 JAAKGM020000028.1 97.78 True relocation, inconsistency = -219060 41568866 41572854 893949 889990 NC_060934.1 JAAKGM020000028.1 97.14 True fake: not a misassembly (possible transposable element) 41644566 41646635 898324 896284 NC_060934.1 JAAKGM020000028.1 96.39 True fake: not a misassembly (possible transposable element) 41562332 41566500 902492 898325 NC_060934.1 JAAKGM020000028.1 97.91 True relocation, inconsistency = 11879 41544704 41547079 908241 905866 NC_060934.1 JAAKGM020000028.1 97.97 True relocation, inconsistency = -23422 41562767 41568125 913600 908242 NC_060934.1 JAAKGM020000028.1 97.7 True relocation, inconsistency = -85535 41647153 41648301 914749 913601 NC_060934.1 JAAKGM020000028.1 97.73 True local misassembly 41644288 41646635 917611 915265 NC_060934.1 JAAKGM020000028.1 98.21 True local misassembly 41644260 41645597 920693 919356 NC_060934.1 JAAKGM020000028.1 98.05 True local misassembly 41643889 41647654 924458 920694 NC_060934.1 JAAKGM020000028.1 98.17 True local misassembly 41640866 41643190 927480 925157 NC_060934.1 JAAKGM020000028.1 97.63 True local misassembly 41642318 41646635 931797 927481 NC_060934.1 JAAKGM020000028.1 97.61 True relocation, inconsistency = 115067 41523191 41526692 935855 932356 NC_060934.1 JAAKGM020000028.1 97.65 True relocation, inconsistency = -124571 41643793 41647761 939820 935856 NC_060934.1 JAAKGM020000028.1 97.81 True relocation, inconsistency = 600555 41040597 41043237 942461 939821 NC_060934.1 JAAKGM020000028.1 98.32 True relocation, inconsistency = -608026 41644808 41648622 946274 942462 NC_060934.1 JAAKGM020000028.1 98.2 True local misassembly 41643793 41649221 951703 946275 NC_060934.1 JAAKGM020000028.1 98.08 True relocation, inconsistency = 93341 41547736 41550451 954418 951704 NC_060934.1 JAAKGM020000028.1 97.83 True relocation, inconsistency = 208195 41332530 41335463 961427 958496 NC_060934.1 JAAKGM020000028.1 97.89 True relocation, inconsistency = 533857 40796143 40798471 963957 961629 NC_060934.1 JAAKGM020000028.1 98.02 True relocation, inconsistency = -853386 41643803 41648622 969679 964864 NC_060934.1 JAAKGM020000028.1 98.24 True local misassembly 41644567 41648216 973325 969680 NC_060934.1 JAAKGM020000028.1 98.57 True local misassembly 41644567 41648622 978412 974363 NC_060934.1 JAAKGM020000028.1 98.3 True relocation, inconsistency = -7133 41644616 41648537 985494 981575 NC_060934.1 JAAKGM020000028.1 98.39 True local misassembly 41644567 41648537 991653 987687 NC_060934.1 JAAKGM020000028.1 98.61 True relocation, inconsistency = 13230 41626198 41627263 996792 995727 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = -22737 41643803 41648934 1001922 996793 NC_060934.1 JAAKGM020000028.1 98.48 True relocation, inconsistency = 846934 40796143 40796868 1002648 1001923 NC_060934.1 JAAKGM020000028.1 98.39 True relocation, inconsistency = -856439 41647604 41648622 1007626 1006608 NC_060934.1 JAAKGM020000028.1 98.54 True local misassembly 41643803 41648622 1012441 1007627 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = 803165 40835539 40839265 1017537 1013814 NC_060934.1 JAAKGM020000028.1 96.97 True relocation, inconsistency = -811990 41647027 41647528 1018039 1017538 NC_060934.1 JAAKGM020000028.1 98.23 True local misassembly 41646350 41646879 1018569 1018040 NC_060934.1 JAAKGM020000028.1 98.87 True indel: indel (<= 5bp) 41645401 41646347 1019516 1018570 NC_060934.1 JAAKGM020000028.1 97.65 True relocation, inconsistency = -13913 41655005 41659313 1023828 1019517 NC_060934.1 JAAKGM020000028.1 97.12 True indel: indel (<= 5bp) 41652280 41654651 1026552 1024181 NC_060934.1 JAAKGM020000028.1 97.6 True indel: indel (<= 5bp) 41650580 41651936 1028251 1026895 NC_060934.1 JAAKGM020000028.1 98.18 True relocation, inconsistency = 21381 41625093 41629198 1032357 1028252 NC_060934.1 JAAKGM020000028.1 97.61 True relocation, inconsistency = 1976172 39648086 39648920 1033191 1032358 NC_060934.1 JAAKGM020000028.1 97.99 True relocation, inconsistency = -1999588 41645331 41647366 1035534 1033499 NC_060934.1 JAAKGM020000028.1 98.77 True indel: indel (<= 5bp) 41643793 41645328 1037070 1035535 NC_060934.1 JAAKGM020000028.1 97.92 True local misassembly 41642618 41643792 1038584 1037410 NC_060934.1 JAAKGM020000028.1 96.77 True relocation, inconsistency = 204985 41433040 41437448 1043177 1038769 NC_060934.1 JAAKGM020000028.1 97.53 True relocation, inconsistency = -168330 41597405 41601369 1047146 1043178 NC_060934.1 JAAKGM020000028.1 97.89 True local misassembly 41597915 41600440 1049691 1047166 NC_060934.1 JAAKGM020000028.1 98.1 True indel: indel (<= 5bp) 41596768 41597914 1050839 1049693 NC_060934.1 JAAKGM020000028.1 98.26 True relocation, inconsistency = -52603 41644801 41648622 1055404 1051588 NC_060934.1 JAAKGM020000028.1 98.01 True local misassembly 41643803 41649214 1060814 1055405 NC_060934.1 JAAKGM020000028.1 97.86 True local misassembly 41644521 41648622 1065526 1061428 NC_060934.1 JAAKGM020000028.1 98.2 True local misassembly 41643454 41648934 1071005 1065527 NC_060934.1 JAAKGM020000028.1 98.45 True local misassembly 41643793 41648934 1077115 1071976 NC_060934.1 JAAKGM020000028.1 98.09 True relocation, inconsistency = 238240 41401566 41405552 1081103 1077116 NC_060934.1 JAAKGM020000028.1 97.54 True relocation, inconsistency = -256566 41654995 41658118 1084242 1081117 NC_060934.1 JAAKGM020000028.1 96.93 True local misassembly 41649188 41650921 1085976 1084243 NC_060934.1 JAAKGM020000028.1 97.89 True local misassembly 41651873 41652668 1087365 1086570 NC_060934.1 JAAKGM020000028.1 98.49 True relocation, inconsistency = -145188 41793283 41797057 1091144 1087369 NC_060934.1 JAAKGM020000028.1 98.28 True CONTIG JAAKGM020000028.1 1091146 misassembled 126140024 126141103 785 1865 NC_060925.1 JAAKGM020000029.1 98.52 True relocation, inconsistency = 1961432 124177175 124178582 3282 1875 NC_060925.1 JAAKGM020000029.1 97.8 True relocation, inconsistency = 1715478 125894656 125896694 3878 5915 NC_060925.1 JAAKGM020000029.1 98.12 True relocation, inconsistency = -3872151 122024544 122027433 5916 8805 NC_060925.1 JAAKGM020000029.1 98.13 True relocation, inconsistency = 2149741 124177175 124178445 10076 8806 NC_060925.1 JAAKGM020000029.1 97.42 True relocation, inconsistency = 1704402 125883552 125885627 10781 12856 NC_060925.1 JAAKGM020000029.1 98.27 True relocation, inconsistency = 1701682 124180573 124181869 14153 12857 NC_060925.1 JAAKGM020000029.1 97.49 True relocation, inconsistency = 520450 123659352 123660122 14154 14924 NC_060925.1 JAAKGM020000029.1 98.95 True relocation, inconsistency = 2290417 125952403 125953770 16788 18154 NC_060925.1 JAAKGM020000029.1 97.34 True relocation, inconsistency = 55244 126009015 126011198 18155 20341 NC_060925.1 JAAKGM020000029.1 97.39 True fake: not a misassembly (possible transposable element) 126251419 126253190 21883 23654 NC_060925.1 JAAKGM020000029.1 97.63 True fake: not a misassembly (possible transposable element) 126010774 126015541 23655 28416 NC_060925.1 JAAKGM020000029.1 97.0 True relocation, inconsistency = 30822 126046364 126048077 28417 30129 NC_060925.1 JAAKGM020000029.1 98.08 True relocation, inconsistency = -173372 125874948 125875965 30372 31390 NC_060925.1 JAAKGM020000029.1 97.42 True relocation, inconsistency = -2416895 123459071 123462302 31391 34626 NC_060925.1 JAAKGM020000029.1 97.25 True relocation, inconsistency = 2640321 126102784 126106799 34787 38806 NC_060925.1 JAAKGM020000029.1 97.61 True local misassembly 126102724 126104077 38807 40160 NC_060925.1 JAAKGM020000029.1 97.54 True local misassembly 126102718 126107627 40161 45075 NC_060925.1 JAAKGM020000029.1 97.62 True local misassembly 126102718 126108380 45601 51266 NC_060925.1 JAAKGM020000029.1 97.44 True fake: not a misassembly (possible transposable element) 126009162 126011723 51267 53831 NC_060925.1 JAAKGM020000029.1 98.82 True fake: not a misassembly (possible transposable element) 126105507 126108648 53832 56973 NC_060925.1 JAAKGM020000029.1 98.54 True fake: not a misassembly (possible transposable element) 126009428 126011723 56974 59267 NC_060925.1 JAAKGM020000029.1 98.22 True fake: not a misassembly (possible transposable element) 126105507 126108399 59268 62164 NC_060925.1 JAAKGM020000029.1 98.62 True relocation, inconsistency = 88831 126201171 126202202 66105 67136 NC_060925.1 JAAKGM020000029.1 97.58 True relocation, inconsistency = -171746 126030747 126034628 67427 71307 NC_060925.1 JAAKGM020000029.1 97.27 True relocation, inconsistency = 211157 126246331 126249355 71853 74879 NC_060925.1 JAAKGM020000029.1 97.46 True relocation, inconsistency = -275564 125974163 125976181 75251 77268 NC_060925.1 JAAKGM020000029.1 97.08 True indel: indel (<= 5bp) 125976532 125980061 77620 81154 NC_060925.1 JAAKGM020000029.1 97.65 True relocation, inconsistency = 557770 125413631 125418761 86288 81155 NC_060925.1 JAAKGM020000029.1 97.61 True relocation, inconsistency = 3278219 122130499 122135107 86593 91200 NC_060925.1 JAAKGM020000029.1 97.33 True relocation, inconsistency = 4111206 126246314 126248264 91201 93151 NC_060925.1 JAAKGM020000029.1 97.26 True relocation, inconsistency = -2164890 124086550 124087722 96327 97497 NC_060925.1 JAAKGM020000029.1 97.87 True translocation 26157698 26158694 98693 99692 NC_060943.1 JAAKGM020000029.1 96.4 True relocation, inconsistency = 3558829 29717578 29718807 99747 100975 NC_060943.1 JAAKGM020000029.1 97.33 True translocation 125602136 125606958 105791 100976 NC_060925.1 JAAKGM020000029.1 97.37 True relocation, inconsistency = 1516520 124078709 124084913 106494 112692 NC_060925.1 JAAKGM020000029.1 97.82 True relocation, inconsistency = 133903 124229948 124232919 126796 123824 NC_060925.1 JAAKGM020000029.1 98.86 True local misassembly 124229801 124232919 130343 127223 NC_060925.1 JAAKGM020000029.1 98.75 True translocation 29667975 29669110 131684 132819 NC_060943.1 JAAKGM020000029.1 97.18 True translocation 125927143 125929317 136944 139119 NC_060925.1 JAAKGM020000029.1 98.69 True relocation, inconsistency = 248895 125674084 125678247 143282 139120 NC_060925.1 JAAKGM020000029.1 97.98 True relocation, inconsistency = 3413713 122257235 122260370 143283 146417 NC_060925.1 JAAKGM020000029.1 97.89 True relocation, inconsistency = 3669447 125930337 125933474 146937 150078 NC_060925.1 JAAKGM020000029.1 98.63 True relocation, inconsistency = 1700559 124229021 124229777 150835 150079 NC_060925.1 JAAKGM020000029.1 99.24 True relocation, inconsistency = 2224581 122002229 122004156 151119 153042 NC_060925.1 JAAKGM020000029.1 96.63 True relocation, inconsistency = 2197345 124202200 124204404 155944 153741 NC_060925.1 JAAKGM020000029.1 97.73 True translocation 27719828 27722668 156162 159004 NC_060943.1 JAAKGM020000029.1 96.94 True translocation 125930337 125933474 162905 166046 NC_060925.1 JAAKGM020000029.1 98.44 True relocation, inconsistency = 1700559 124229021 124229777 166803 166047 NC_060925.1 JAAKGM020000029.1 99.24 True relocation, inconsistency = 22730 124201953 124206066 171136 167028 NC_060925.1 JAAKGM020000029.1 97.28 True translocation 27720537 27722668 171137 173269 NC_060943.1 JAAKGM020000029.1 97.19 True local misassembly 27718497 27722484 174533 178525 NC_060943.1 JAAKGM020000029.1 96.89 True relocation, inconsistency = 1676749 29399956 29402467 179248 181759 NC_060943.1 JAAKGM020000029.1 96.14 True relocation, inconsistency = 319991 29726066 29728883 185367 188185 NC_060943.1 JAAKGM020000029.1 95.53 True translocation 122029163 122030095 188254 189186 NC_060925.1 JAAKGM020000029.1 98.29 True translocation 29591685 29593940 189277 191532 NC_060943.1 JAAKGM020000029.1 96.37 True translocation 125979601 125981028 193849 195276 NC_060925.1 JAAKGM020000029.1 96.85 True translocation 27813304 27816153 196599 199449 NC_060943.1 JAAKGM020000029.1 96.81 True translocation 124161254 124163815 205376 202815 NC_060925.1 JAAKGM020000029.1 96.84 True indel: indel (<= 5bp) 124159697 124160949 206931 205679 NC_060925.1 JAAKGM020000029.1 98.56 True local misassembly 124163490 124164345 208578 207722 NC_060925.1 JAAKGM020000029.1 96.85 True relocation, inconsistency = 1843136 126007852 126009051 208949 210148 NC_060925.1 JAAKGM020000029.1 97.54 True relocation, inconsistency = 203347 126212399 126217626 210149 215377 NC_060925.1 JAAKGM020000029.1 97.53 True relocation, inconsistency = -4110958 122106669 122107550 215378 216259 NC_060925.1 JAAKGM020000029.1 98.05 True relocation, inconsistency = 258412 122365963 122367623 216260 217919 NC_060925.1 JAAKGM020000029.1 97.82 True relocation, inconsistency = -355309 122012315 122015480 217920 221085 NC_060925.1 JAAKGM020000029.1 97.47 True relocation, inconsistency = 4223814 126239295 126241618 221086 223409 NC_060925.1 JAAKGM020000029.1 97.77 True local misassembly 126236861 126244040 223410 230589 NC_060925.1 JAAKGM020000029.1 97.3 True local misassembly 126237584 126242245 230590 235251 NC_060925.1 JAAKGM020000029.1 97.46 True local misassembly 126235449 126240290 235252 240093 NC_060925.1 JAAKGM020000029.1 96.84 True local misassembly 126242330 126243780 240094 241544 NC_060925.1 JAAKGM020000029.1 97.18 True local misassembly 126244285 126248264 242387 246367 NC_060925.1 JAAKGM020000029.1 97.36 True relocation, inconsistency = -2162511 124086550 124088171 247164 248781 NC_060925.1 JAAKGM020000029.1 96.79 True relocation, inconsistency = -2047973 122040982 122043388 249565 251972 NC_060925.1 JAAKGM020000029.1 98.01 True relocation, inconsistency = 4228497 126274187 126275056 254274 255143 NC_060925.1 JAAKGM020000029.1 97.24 True local misassembly 126281429 126283303 255396 257268 NC_060925.1 JAAKGM020000029.1 97.65 True local misassembly 126277164 126278687 257921 259444 NC_060925.1 JAAKGM020000029.1 97.25 True relocation, inconsistency = 2104067 124168094 124172933 264451 259608 NC_060925.1 JAAKGM020000029.1 97.07 True relocation, inconsistency = 1715259 125890918 125892171 267177 268431 NC_060925.1 JAAKGM020000029.1 97.7 True relocation, inconsistency = -3127960 122764212 122768925 268432 273143 NC_060925.1 JAAKGM020000029.1 97.2 True relocation, inconsistency = 3098734 125867660 125870952 273144 276434 NC_060925.1 JAAKGM020000029.1 96.96 True relocation, inconsistency = -3722496 122152791 122154229 280769 282205 NC_060925.1 JAAKGM020000029.1 96.46 True relocation, inconsistency = 2674582 124847087 124851923 305324 300481 NC_060925.1 JAAKGM020000029.1 97.94 True local misassembly 124847755 124848787 306356 305325 NC_060925.1 JAAKGM020000029.1 98.18 True relocation, inconsistency = 2396418 122447829 122450413 307280 309863 NC_060925.1 JAAKGM020000029.1 98.38 True relocation, inconsistency = 1737146 124189735 124193212 315519 312039 NC_060925.1 JAAKGM020000029.1 98.71 True relocation, inconsistency = 1737888 125931101 125933806 315520 318230 NC_060925.1 JAAKGM020000029.1 98.73 True local misassembly 125928204 125929741 319081 320618 NC_060925.1 JAAKGM020000029.1 98.57 True relocation, inconsistency = 1732697 124190779 124193212 325347 322913 NC_060925.1 JAAKGM020000029.1 98.42 True translocation 28887738 28892176 325348 329787 NC_060943.1 JAAKGM020000029.1 96.8 True translocation 122165789 122166778 329788 330777 NC_060925.1 JAAKGM020000029.1 96.93 True translocation 27838120 27840968 330778 333627 NC_060943.1 JAAKGM020000029.1 96.95 True translocation 126099504 126100450 335849 336794 NC_060925.1 JAAKGM020000029.1 98.73 True relocation, inconsistency = -239784 125863048 125865359 339176 341485 NC_060925.1 JAAKGM020000029.1 96.94 True local misassembly 125862641 125865946 341486 344792 NC_060925.1 JAAKGM020000029.1 96.74 True relocation, inconsistency = 91051 125958181 125959946 345976 347740 NC_060925.1 JAAKGM020000029.1 97.28 True relocation, inconsistency = -3783630 122176317 122177271 347741 348694 NC_060925.1 JAAKGM020000029.1 97.74 True local misassembly 122175230 122176766 348695 350231 NC_060925.1 JAAKGM020000029.1 98.11 True translocation 29418792 29420312 351075 352598 NC_060943.1 JAAKGM020000029.1 96.0 True relocation, inconsistency = -3511356 25909169 25909820 352811 353463 NC_060943.1 JAAKGM020000029.1 97.44 True translocation 125867137 125870435 353464 356762 NC_060925.1 JAAKGM020000029.1 97.51 True relocation, inconsistency = 232259 126102695 126109490 356763 363563 NC_060925.1 JAAKGM020000029.1 97.81 True relocation, inconsistency = -242114 125867377 125870435 363564 366623 NC_060925.1 JAAKGM020000029.1 97.49 True relocation, inconsistency = 135758 126006194 126011126 366624 371560 NC_060925.1 JAAKGM020000029.1 97.59 True local misassembly 126009768 126011126 371561 372921 NC_060925.1 JAAKGM020000029.1 97.6 True relocation, inconsistency = -4108897 121902453 121905374 373145 376074 NC_060925.1 JAAKGM020000029.1 96.76 True relocation, inconsistency = 4072688 125978273 125982265 376285 380279 NC_060925.1 JAAKGM020000029.1 97.45 True relocation, inconsistency = 157468 126139734 126142183 380280 382731 NC_060925.1 JAAKGM020000029.1 97.65 True relocation, inconsistency = -91059 126051753 126055331 383360 386940 NC_060925.1 JAAKGM020000029.1 98.24 True relocation, inconsistency = -194444 125860888 125864252 386941 390303 NC_060925.1 JAAKGM020000029.1 96.84 True local misassembly 125860855 125862795 390304 392244 NC_060925.1 JAAKGM020000029.1 97.07 True relocation, inconsistency = 238719 126103505 126107538 394235 398270 NC_060925.1 JAAKGM020000029.1 97.35 True relocation, inconsistency = 108888 126216427 126218302 398271 400149 NC_060925.1 JAAKGM020000029.1 97.24 True local misassembly 126214613 126217219 401553 404159 NC_060925.1 JAAKGM020000029.1 97.91 True local misassembly 126214502 126217541 404160 407198 NC_060925.1 JAAKGM020000029.1 98.16 True relocation, inconsistency = -3778460 122440020 122443482 408137 411597 NC_060925.1 JAAKGM020000029.1 97.17 True relocation, inconsistency = 3827719 126271202 126271890 411598 412286 NC_060925.1 JAAKGM020000029.1 97.75 True indel: stretch of mismatches 126272064 126272676 412460 413072 NC_060925.1 JAAKGM020000029.1 98.53 True relocation, inconsistency = 8500 126281437 126283450 413333 415345 NC_060925.1 JAAKGM020000029.1 97.82 True relocation, inconsistency = -4140426 122143025 122144474 415346 416794 NC_060925.1 JAAKGM020000029.1 97.22 True relocation, inconsistency = 4015093 126159568 126160148 416795 417375 NC_060925.1 JAAKGM020000029.1 96.43 True relocation, inconsistency = -302452 125858691 125859654 418370 419332 NC_060925.1 JAAKGM020000029.1 97.32 True relocation, inconsistency = 416235 126275890 126279222 419333 422668 NC_060925.1 JAAKGM020000029.1 97.55 True relocation, inconsistency = -3312044 122967179 122972087 422669 427574 NC_060925.1 JAAKGM020000029.1 97.66 True relocation, inconsistency = 1641115 124614027 124616793 431162 428399 NC_060925.1 JAAKGM020000029.1 97.54 True relocation, inconsistency = 1655293 126272087 126272676 431163 431752 NC_060925.1 JAAKGM020000029.1 98.21 True relocation, inconsistency = 8500 126281437 126283450 432013 434025 NC_060925.1 JAAKGM020000029.1 97.91 True relocation, inconsistency = -4140426 122143025 122144448 434026 435448 NC_060925.1 JAAKGM020000029.1 97.24 True relocation, inconsistency = 4015093 126159542 126160148 435449 436055 NC_060925.1 JAAKGM020000029.1 96.31 True translocation 29202482 29203493 436651 437662 NC_060943.1 JAAKGM020000029.1 96.05 True translocation 126187916 126189882 438727 440696 NC_060925.1 JAAKGM020000029.1 96.8 True local misassembly 126187591 126189882 441121 443415 NC_060925.1 JAAKGM020000029.1 97.3 True local misassembly 126190529 126192467 444063 446001 NC_060925.1 JAAKGM020000029.1 97.37 True relocation, inconsistency = -3227773 122965480 122970472 446787 451777 NC_060925.1 JAAKGM020000029.1 98.08 True translocation 29667975 29669135 464561 465721 NC_060943.1 JAAKGM020000029.1 97.24 True local misassembly 29667975 29669135 465921 467081 NC_060943.1 JAAKGM020000029.1 97.33 True fake: not a misassembly (possible transposable element) 29685648 29686781 467281 468416 NC_060943.1 JAAKGM020000029.1 98.24 True fake: not a misassembly (possible transposable element) 29667975 29669220 468641 469886 NC_060943.1 JAAKGM020000029.1 97.19 True relocation, inconsistency = 9515 29685648 29686781 476799 477934 NC_060943.1 JAAKGM020000029.1 98.24 True translocation 125165600 125169425 502332 498509 NC_060925.1 JAAKGM020000029.1 98.54 True relocation, inconsistency = 2905229 122257235 122260370 502333 505467 NC_060925.1 JAAKGM020000029.1 98.03 True relocation, inconsistency = 1947178 124207728 124210521 508449 505647 NC_060925.1 JAAKGM020000029.1 98.25 True relocation, inconsistency = -18316 124224689 124226043 509808 508450 NC_060925.1 JAAKGM020000029.1 97.98 True relocation, inconsistency = 2049010 122173576 122174780 510447 511651 NC_060925.1 JAAKGM020000029.1 97.61 True fake: not a misassembly (possible transposable element) 122165264 122168507 511652 514894 NC_060925.1 JAAKGM020000029.1 96.86 True fake: not a misassembly (possible transposable element) 122179515 122180860 516045 517390 NC_060925.1 JAAKGM020000029.1 97.92 True relocation, inconsistency = -152728 122028316 122028888 517574 518146 NC_060925.1 JAAKGM020000029.1 96.68 True relocation, inconsistency = 113629 122143163 122144398 518792 520027 NC_060925.1 JAAKGM020000029.1 98.14 True translocation 29576048 29578511 520126 522590 NC_060943.1 JAAKGM020000029.1 96.11 True relocation, inconsistency = -175581 29403866 29406464 523526 526124 NC_060943.1 JAAKGM020000029.1 96.5 True translocation 125863136 125864846 526125 527834 NC_060925.1 JAAKGM020000029.1 97.55 True relocation, inconsistency = -2048763 123816278 123817025 528029 528777 NC_060925.1 JAAKGM020000029.1 96.69 True relocation, inconsistency = -1651976 122165050 122168261 528778 531988 NC_060925.1 JAAKGM020000029.1 96.58 True local misassembly 122173699 122175040 531989 533330 NC_060925.1 JAAKGM020000029.1 97.68 True translocation 27838109 27840019 536274 538185 NC_060943.1 JAAKGM020000029.1 97.38 True translocation 126213281 126213811 538186 538716 NC_060925.1 JAAKGM020000029.1 96.93 True indel: indel (<= 5bp) 126214061 126214650 538965 539555 NC_060925.1 JAAKGM020000029.1 96.93 True relocation, inconsistency = -337744 125876907 125879542 539556 542191 NC_060925.1 JAAKGM020000029.1 96.85 True relocation, inconsistency = -3791564 122089887 122093663 544100 547875 NC_060925.1 JAAKGM020000029.1 96.9 True relocation, inconsistency = 1816209 123909873 123911523 547876 549525 NC_060925.1 JAAKGM020000029.1 96.77 True translocation 26002983 26005293 549526 551841 NC_060943.1 JAAKGM020000029.1 96.42 True translocation 126043926 126045146 551842 553062 NC_060925.1 JAAKGM020000029.1 98.56 True relocation, inconsistency = -4071545 121973802 121975135 553263 554595 NC_060925.1 JAAKGM020000029.1 96.87 True relocation, inconsistency = 3884865 125860001 125864570 554596 559165 NC_060925.1 JAAKGM020000029.1 96.92 True translocation 29524626 29525526 560144 561043 NC_060943.1 JAAKGM020000029.1 96.8 True translocation 125874948 125876645 561044 562742 NC_060925.1 JAAKGM020000029.1 98.22 True local misassembly 125874948 125877070 562743 564866 NC_060925.1 JAAKGM020000029.1 98.35 True translocation 29249108 29250359 564867 566118 NC_060943.1 JAAKGM020000029.1 97.0 True translocation 126248710 126249718 567171 568181 NC_060925.1 JAAKGM020000029.1 97.38 True fake: not a misassembly (possible transposable element) 125875966 125877786 568182 570002 NC_060925.1 JAAKGM020000029.1 97.75 True fake: not a misassembly (possible transposable element) 126250242 126250785 570065 570608 NC_060925.1 JAAKGM020000029.1 98.23 True fake: not a misassembly (possible transposable element) 29246358 29250359 570609 574616 NC_060943.1 JAAKGM020000029.1 96.76 True fake: not a misassembly (possible transposable element) 126257857 126260878 574617 577640 NC_060925.1 JAAKGM020000029.1 97.64 True relocation, inconsistency = -217714 126045623 126047723 580099 582196 NC_060925.1 JAAKGM020000029.1 96.91 True relocation, inconsistency = 166413 126214959 126215758 583019 583818 NC_060925.1 JAAKGM020000029.1 98.44 True relocation, inconsistency = -11217 126204542 126205530 583819 584807 NC_060925.1 JAAKGM020000029.1 98.38 True relocation, inconsistency = 20725 126226635 126229415 585187 587963 NC_060925.1 JAAKGM020000029.1 97.63 True relocation, inconsistency = -3437821 122791595 122792942 587964 589310 NC_060925.1 JAAKGM020000029.1 97.03 True relocation, inconsistency = 3398064 126191007 126193751 589311 592052 NC_060925.1 JAAKGM020000029.1 97.3 True relocation, inconsistency = -214067 125980601 125983067 592969 595429 NC_060925.1 JAAKGM020000029.1 97.41 True relocation, inconsistency = 227672 126213370 126217946 598060 602587 NC_060925.1 JAAKGM020000029.1 96.96 True relocation, inconsistency = -180979 126037156 126037832 602776 603451 NC_060925.1 JAAKGM020000029.1 97.87 True relocation, inconsistency = 219027 126256860 126259413 603452 606003 NC_060925.1 JAAKGM020000029.1 98.08 True local misassembly 126257375 126258898 606004 607525 NC_060925.1 JAAKGM020000029.1 98.08 True local misassembly 126256860 126259413 607526 610077 NC_060925.1 JAAKGM020000029.1 98.08 True local misassembly 126257375 126258898 610078 611599 NC_060925.1 JAAKGM020000029.1 98.12 True local misassembly 126256860 126259413 611600 614151 NC_060925.1 JAAKGM020000029.1 98.12 True local misassembly 126257375 126258898 614152 615673 NC_060925.1 JAAKGM020000029.1 98.08 True local misassembly 126256860 126260002 615674 618814 NC_060925.1 JAAKGM020000029.1 97.93 True relocation, inconsistency = -282367 125977636 125979002 618815 620186 NC_060925.1 JAAKGM020000029.1 97.93 True local misassembly 125979593 125982806 621116 624327 NC_060925.1 JAAKGM020000029.1 97.76 True local misassembly 125978828 125982410 624765 628345 NC_060925.1 JAAKGM020000029.1 97.49 True relocation, inconsistency = 271496 126253907 126255333 628346 629770 NC_060925.1 JAAKGM020000029.1 97.97 True local misassembly 126252346 126255333 631202 634187 NC_060925.1 JAAKGM020000029.1 97.62 True local misassembly 126256710 126259783 635222 638291 NC_060925.1 JAAKGM020000029.1 96.97 True relocation, inconsistency = -7139 126252645 126256513 638292 642156 NC_060925.1 JAAKGM020000029.1 97.42 True local misassembly 126254474 126255158 642157 642841 NC_060925.1 JAAKGM020000029.1 98.15 True local misassembly 126253460 126256303 642842 645680 NC_060925.1 JAAKGM020000029.1 98.31 True local misassembly 126258004 126259073 645681 646748 NC_060925.1 JAAKGM020000029.1 97.7 True relocation, inconsistency = -265430 125994488 125995213 647593 648318 NC_060925.1 JAAKGM020000029.1 97.42 True relocation, inconsistency = 194746 126189960 126192877 648319 651235 NC_060925.1 JAAKGM020000029.1 97.23 True relocation, inconsistency = -4039842 122153036 122153769 651236 651969 NC_060925.1 JAAKGM020000029.1 97.47 True relocation, inconsistency = 3953732 126107555 126112042 652023 656510 NC_060925.1 JAAKGM020000029.1 97.82 True relocation, inconsistency = -106302 126006674 126007986 657444 658756 NC_060925.1 JAAKGM020000029.1 98.75 True relocation, inconsistency = 167027 126175014 126178105 658757 661898 NC_060925.1 JAAKGM020000029.1 95.23 True relocation, inconsistency = -4319698 121859047 121860990 662538 664481 NC_060925.1 JAAKGM020000029.1 97.53 True relocation, inconsistency = 396110 122258715 122260987 666096 668365 NC_060925.1 JAAKGM020000029.1 97.49 True relocation, inconsistency = -114217 122148711 122151266 670306 672859 NC_060925.1 JAAKGM020000029.1 97.38 True relocation, inconsistency = 21421 122175230 122177348 675402 677520 NC_060925.1 JAAKGM020000029.1 96.56 True relocation, inconsistency = 90752 122268392 122270826 677812 680247 NC_060925.1 JAAKGM020000029.1 97.09 True relocation, inconsistency = 20394 122291221 122292332 680248 681359 NC_060925.1 JAAKGM020000029.1 97.56 True relocation, inconsistency = 3978634 126273754 126275016 684147 685409 NC_060925.1 JAAKGM020000029.1 97.31 True local misassembly 126275358 126276729 685410 686781 NC_060925.1 JAAKGM020000029.1 97.81 True indel: indel (<= 5bp) 126276730 126277374 686783 687427 NC_060925.1 JAAKGM020000029.1 97.52 True indel: indel (<= 5bp) 126277375 126278732 687429 688786 NC_060925.1 JAAKGM020000029.1 98.31 True indel: indel (<= 5bp) 126278733 126283455 688788 693510 NC_060925.1 JAAKGM020000029.1 98.64 True fake: not a misassembly (possible transposable element) 126121927 126123607 694891 696569 NC_060925.1 JAAKGM020000029.1 97.38 True fake: not a misassembly (possible transposable element) 126295291 126296316 698891 699912 NC_060925.1 JAAKGM020000029.1 95.46 True local misassembly 126296996 126298961 699913 701878 NC_060925.1 JAAKGM020000029.1 97.36 True local misassembly 126303041 126351307 702397 750325 NC_060925.1 JAAKGM020000029.1 98.21 True CONTIG JAAKGM020000029.1 750334 misassembled 92687906 92693164 5858 601 NC_060926.1 JAAKGM020000030.1 98.75 True local misassembly 92679066 92681105 7898 5859 NC_060926.1 JAAKGM020000030.1 99.45 True relocation, inconsistency = -12238 92689266 92691170 9936 8032 NC_060926.1 JAAKGM020000030.1 99.06 True local misassembly 92686546 92693210 16735 10071 NC_060926.1 JAAKGM020000030.1 99.35 True local misassembly 92688586 92692664 20814 16736 NC_060926.1 JAAKGM020000030.1 99.29 True local misassembly 92681106 92683633 23534 21007 NC_060926.1 JAAKGM020000030.1 99.29 True local misassembly 92681106 92684371 29652 26387 NC_060926.1 JAAKGM020000030.1 99.02 True local misassembly 92683146 92685865 32370 29653 NC_060926.1 JAAKGM020000030.1 98.29 True local misassembly 92680390 92687090 39886 33186 NC_060926.1 JAAKGM020000030.1 98.81 True relocation, inconsistency = -743385 93419636 93423774 44026 39887 NC_060926.1 JAAKGM020000030.1 98.15 True relocation, inconsistency = 802840 92616265 92616795 44557 44027 NC_060926.1 JAAKGM020000030.1 98.44 True local misassembly 92614998 92615922 45482 44558 NC_060926.1 JAAKGM020000030.1 98.16 True relocation, inconsistency = -75427 92687034 92690364 48873 45543 NC_060926.1 JAAKGM020000030.1 98.95 True relocation, inconsistency = 18697 92662649 92668336 54565 48874 NC_060926.1 JAAKGM020000030.1 99.47 True relocation, inconsistency = 43486 92618243 92619162 55485 54566 NC_060926.1 JAAKGM020000030.1 99.41 True indel: indel (<= 5bp) 92617642 92618242 56087 55487 NC_060926.1 JAAKGM020000030.1 97.41 True relocation, inconsistency = 56583 92556917 92561058 60228 56088 NC_060926.1 JAAKGM020000030.1 98.6 True relocation, inconsistency = -111612 92664208 92668336 64549 60421 NC_060926.1 JAAKGM020000030.1 99.59 True indel: indel (<= 5bp) 92663490 92664207 65268 64551 NC_060926.1 JAAKGM020000030.1 99.72 True local misassembly 92661730 92662648 67368 66450 NC_060926.1 JAAKGM020000030.1 99.56 True local misassembly 92660272 92661729 69505 68048 NC_060926.1 JAAKGM020000030.1 99.52 True local misassembly 92658420 92659929 71015 69506 NC_060926.1 JAAKGM020000030.1 99.77 True relocation, inconsistency = 14606 92637957 92643813 76872 71016 NC_060926.1 JAAKGM020000030.1 98.46 True fake: not a misassembly (possible transposable element) 92658169 92661246 80100 77023 NC_060926.1 JAAKGM020000030.1 98.99 True fake: not a misassembly (possible transposable element) 92634762 92636766 82104 80101 NC_060926.1 JAAKGM020000030.1 98.46 True relocation, inconsistency = -21067 92646449 92655828 91142 82105 NC_060926.1 JAAKGM020000030.1 95.37 True local misassembly 92645234 92653111 99497 91277 NC_060926.1 JAAKGM020000030.1 95.05 True local misassembly 92636598 92642580 108134 102150 NC_060926.1 JAAKGM020000030.1 98.31 True relocation, inconsistency = -242946 92875465 92879216 112213 108462 NC_060926.1 JAAKGM020000030.1 98.85 True local misassembly 92876824 92878435 114587 112976 NC_060926.1 JAAKGM020000030.1 99.38 True local misassembly 92875480 92876823 116272 114929 NC_060926.1 JAAKGM020000030.1 98.54 True local misassembly 92867652 92870723 119344 116273 NC_060926.1 JAAKGM020000030.1 98.5 True relocation, inconsistency = 373249 92492228 92493750 121519 119997 NC_060926.1 JAAKGM020000030.1 97.68 True relocation, inconsistency = -259403 92747817 92751630 125333 121520 NC_060926.1 JAAKGM020000030.1 97.93 True local misassembly 92746360 92748834 127807 125334 NC_060926.1 JAAKGM020000030.1 97.9 True local misassembly 92746266 92749753 131296 127808 NC_060926.1 JAAKGM020000030.1 97.82 True relocation, inconsistency = -1071890 93817544 93818155 131908 131297 NC_060926.1 JAAKGM020000030.1 98.12 True relocation, inconsistency = 1100403 92714915 92716795 134134 132254 NC_060926.1 JAAKGM020000030.1 99.84 True local misassembly 92716719 92718984 136400 134135 NC_060926.1 JAAKGM020000030.1 98.41 True relocation, inconsistency = 190794 92519560 92525924 142765 136401 NC_060926.1 JAAKGM020000030.1 98.01 True relocation, inconsistency = -54526 92573411 92574073 143440 142778 NC_060926.1 JAAKGM020000030.1 98.34 True indel: indel (<= 5bp) 92572034 92573408 144815 143441 NC_060926.1 JAAKGM020000030.1 97.45 True indel: indel (<= 5bp) 92570711 92572032 146137 144816 NC_060926.1 JAAKGM020000030.1 96.81 True relocation, inconsistency = -1268260 93837275 93838970 147834 146138 NC_060926.1 JAAKGM020000030.1 97.04 True relocation, inconsistency = 1087521 92746333 92749753 151255 147835 NC_060926.1 JAAKGM020000030.1 97.63 True local misassembly 92746338 92749726 154644 151256 NC_060926.1 JAAKGM020000030.1 97.69 True relocation, inconsistency = 37008 92708511 92709174 155463 154800 NC_060926.1 JAAKGM020000030.1 98.16 True relocation, inconsistency = -1022079 93727352 93730589 158701 155464 NC_060926.1 JAAKGM020000030.1 97.63 True relocation, inconsistency = 977598 92748737 92749753 159718 158702 NC_060926.1 JAAKGM020000030.1 97.63 True relocation, inconsistency = -1005967 93746605 93754703 167819 159719 NC_060926.1 JAAKGM020000030.1 97.56 True relocation, inconsistency = -474860 94220363 94221464 168921 167820 NC_060926.1 JAAKGM020000030.1 98.07 True relocation, inconsistency = 1665487 92551820 92554223 171978 169574 NC_060926.1 JAAKGM020000030.1 98.46 True relocation, inconsistency = -163286 92709144 92714971 177941 172113 NC_060926.1 JAAKGM020000030.1 98.39 True relocation, inconsistency = -134880 92840835 92843679 181131 178286 NC_060926.1 JAAKGM020000030.1 98.65 True relocation, inconsistency = 145424 92692532 92695410 184010 181132 NC_060926.1 JAAKGM020000030.1 98.72 True fake: not a misassembly (possible transposable element) 92698784 92703410 188637 184011 NC_060926.1 JAAKGM020000030.1 99.29 True fake: not a misassembly (possible transposable element) 92688109 92689944 190474 188638 NC_060926.1 JAAKGM020000030.1 98.34 True relocation, inconsistency = 22096 92664197 92665211 192293 191276 NC_060926.1 JAAKGM020000030.1 98.52 True relocation, inconsistency = 113317 92545957 92550879 197216 192294 NC_060926.1 JAAKGM020000030.1 98.44 True relocation, inconsistency = -1133382 93671267 93679305 205333 197250 NC_060926.1 JAAKGM020000030.1 98.31 True relocation, inconsistency = 988801 92680390 92682465 207409 205334 NC_060926.1 JAAKGM020000030.1 99.06 True local misassembly 92683146 92686411 210772 207508 NC_060926.1 JAAKGM020000030.1 98.16 True local misassembly 92673969 92676891 214171 211249 NC_060926.1 JAAKGM020000030.1 99.08 True relocation, inconsistency = -18015 92686546 92691847 219609 214308 NC_060926.1 JAAKGM020000030.1 98.91 True local misassembly 92680390 92681785 221005 219610 NC_060926.1 JAAKGM020000030.1 98.91 True relocation, inconsistency = 125209 92550478 92554901 225709 221285 NC_060926.1 JAAKGM020000030.1 98.64 True relocation, inconsistency = -84778 92631160 92635069 229806 225896 NC_060926.1 JAAKGM020000030.1 98.31 True indel: stretch of mismatches 92627761 92631010 233209 229956 NC_060926.1 JAAKGM020000030.1 98.37 True relocation, inconsistency = -40767 92667534 92668517 234203 233220 NC_060926.1 JAAKGM020000030.1 98.81 True relocation, inconsistency = 112632 92547296 92554901 241808 234204 NC_060926.1 JAAKGM020000030.1 98.08 True relocation, inconsistency = -69833 92616214 92617128 242723 241809 NC_060926.1 JAAKGM020000030.1 99.05 True relocation, inconsistency = -49596 92662649 92665675 245886 242858 NC_060926.1 JAAKGM020000030.1 99.27 True relocation, inconsistency = -21407 92682623 92684055 247319 245887 NC_060926.1 JAAKGM020000030.1 98.96 True local misassembly 92675195 92676844 248969 247320 NC_060926.1 JAAKGM020000030.1 99.04 True fake: not a misassembly (possible transposable element) 92616214 92621853 254610 248970 NC_060926.1 JAAKGM020000030.1 99.1 True fake: not a misassembly (possible transposable element) 92664658 92665675 255762 254745 NC_060926.1 JAAKGM020000030.1 99.34 True fake: not a misassembly (possible transposable element) 93685538 93690499 260722 255763 NC_060926.1 JAAKGM020000030.1 98.13 True fake: not a misassembly (possible transposable element) 92664208 92666489 263004 260723 NC_060926.1 JAAKGM020000030.1 99.48 True indel: indel (<= 5bp) 92663490 92664207 263723 263006 NC_060926.1 JAAKGM020000030.1 99.72 True local misassembly 92660272 92661729 267959 266502 NC_060926.1 JAAKGM020000030.1 99.59 True local misassembly 92657990 92659929 269899 267960 NC_060926.1 JAAKGM020000030.1 99.43 True indel: indel (<= 5bp) 92657477 92657988 270411 269900 NC_060926.1 JAAKGM020000030.1 97.66 True relocation, inconsistency = 14943 92640665 92641900 272280 271045 NC_060926.1 JAAKGM020000030.1 98.46 True indel: indel (<= 5bp) 92640140 92640664 272806 272282 NC_060926.1 JAAKGM020000030.1 97.9 True local misassembly 92633199 92639720 279403 272882 NC_060926.1 JAAKGM020000030.1 99.06 True local misassembly 92631984 92633086 280960 279858 NC_060926.1 JAAKGM020000030.1 98.55 True local misassembly 92634715 92637697 284002 281021 NC_060926.1 JAAKGM020000030.1 98.49 True relocation, inconsistency = -21067 92654747 92655781 285037 284003 NC_060926.1 JAAKGM020000030.1 98.52 True local misassembly 92651626 92653913 287816 285529 NC_060926.1 JAAKGM020000030.1 98.96 True relocation, inconsistency = -662225 93309776 93313850 291891 287817 NC_060926.1 JAAKGM020000030.1 99.18 True relocation, inconsistency = -54362 93357599 93364137 298426 291892 NC_060926.1 JAAKGM020000030.1 98.73 True relocation, inconsistency = 268085 93087340 93088573 300600 299367 NC_060926.1 JAAKGM020000030.1 99.28 True relocation, inconsistency = -528793 93614286 93616132 302447 300601 NC_060926.1 JAAKGM020000030.1 99.4 True local misassembly 93612276 93613943 304115 302448 NC_060926.1 JAAKGM020000030.1 99.7 True indel: indel (<= 5bp) 93610139 93612275 306253 304117 NC_060926.1 JAAKGM020000030.1 97.71 True indel: indel (<= 5bp) 93609584 93610138 306809 306255 NC_060926.1 JAAKGM020000030.1 97.12 True local misassembly 93609487 93616132 313703 307057 NC_060926.1 JAAKGM020000030.1 99.17 True relocation, inconsistency = 963020 92639115 92646315 321055 313855 NC_060926.1 JAAKGM020000030.1 98.07 True relocation, inconsistency = -366256 93002258 93005370 324168 321056 NC_060926.1 JAAKGM020000030.1 99.16 True relocation, inconsistency = 242592 92754149 92759665 329685 324169 NC_060926.1 JAAKGM020000030.1 98.55 True relocation, inconsistency = -346241 93098216 93099449 331859 330626 NC_060926.1 JAAKGM020000030.1 99.57 True relocation, inconsistency = -517917 93614286 93616132 333706 331860 NC_060926.1 JAAKGM020000030.1 99.4 True local misassembly 93612276 93613943 335374 333707 NC_060926.1 JAAKGM020000030.1 99.7 True indel: indel (<= 5bp) 93610139 93612275 337512 335376 NC_060926.1 JAAKGM020000030.1 97.71 True indel: indel (<= 5bp) 93609584 93610138 338068 337514 NC_060926.1 JAAKGM020000030.1 97.12 True local misassembly 93609487 93616132 344962 338316 NC_060926.1 JAAKGM020000030.1 99.17 True relocation, inconsistency = 698675 92902642 92906458 353133 349316 NC_060926.1 JAAKGM020000030.1 96.94 True relocation, inconsistency = 159360 92740108 92743159 356307 353256 NC_060926.1 JAAKGM020000030.1 98.1 True fake: not a misassembly (possible transposable element) 93894977 93897124 358647 356501 NC_060926.1 JAAKGM020000030.1 98.28 True fake: not a misassembly (possible transposable element) 92730388 92732982 362300 359707 NC_060926.1 JAAKGM020000030.1 98.54 True local misassembly 92730046 92732982 365702 362766 NC_060926.1 JAAKGM020000030.1 98.57 True relocation, inconsistency = -21383 92748529 92751309 368603 365822 NC_060926.1 JAAKGM020000030.1 98.74 True relocation, inconsistency = -96856 92844072 92845383 369916 368605 NC_060926.1 JAAKGM020000030.1 98.9 True relocation, inconsistency = -285062 93127593 93129133 371457 369917 NC_060926.1 JAAKGM020000030.1 98.5 True relocation, inconsistency = 265007 92857356 92862585 376687 371458 NC_060926.1 JAAKGM020000030.1 98.93 True local misassembly 92853606 92854978 378060 376688 NC_060926.1 JAAKGM020000030.1 99.59 True local misassembly 92849652 92853263 381672 378061 NC_060926.1 JAAKGM020000030.1 99.39 True indel: indel (<= 5bp) 92848965 92849651 382360 381674 NC_060926.1 JAAKGM020000030.1 99.42 True relocation, inconsistency = -1141561 93987808 93990275 385077 382611 NC_060926.1 JAAKGM020000030.1 97.93 True relocation, inconsistency = 1238419 92748617 92749388 385850 385078 NC_060926.1 JAAKGM020000030.1 97.15 True relocation, inconsistency = 84253 92662649 92664196 387565 386018 NC_060926.1 JAAKGM020000030.1 97.93 True relocation, inconsistency = -29733 92687906 92690738 392041 389209 NC_060926.1 JAAKGM020000030.1 99.51 True relocation, inconsistency = 55386 92629282 92632385 395277 392176 NC_060926.1 JAAKGM020000030.1 98.16 True relocation, inconsistency = -100245 92727862 92729526 396942 395278 NC_060926.1 JAAKGM020000030.1 98.46 True relocation, inconsistency = -172935 92894488 92900796 403248 396943 NC_060926.1 JAAKGM020000030.1 99.06 True relocation, inconsistency = 18681 92875127 92875806 403928 403249 NC_060926.1 JAAKGM020000030.1 98.6 True local misassembly 92873303 92874435 405409 404277 NC_060926.1 JAAKGM020000030.1 97.09 True indel: indel (<= 5bp) 92872739 92873301 405972 405410 NC_060926.1 JAAKGM020000030.1 98.58 True indel: indel (<= 5bp) 92872069 92872737 406641 405973 NC_060926.1 JAAKGM020000030.1 97.76 True relocation, inconsistency = -8492 92872085 92879216 415116 407986 NC_060926.1 JAAKGM020000030.1 99.16 True local misassembly 92864158 92868521 419989 415626 NC_060926.1 JAAKGM020000030.1 99.56 True local misassembly 92869011 92870055 421928 420884 NC_060926.1 JAAKGM020000030.1 98.66 True local misassembly 92868210 92869010 423070 422270 NC_060926.1 JAAKGM020000030.1 99.25 True local misassembly 92864158 92867871 426784 423071 NC_060926.1 JAAKGM020000030.1 99.52 True relocation, inconsistency = 308360 92552619 92555558 429964 427024 NC_060926.1 JAAKGM020000030.1 97.79 True relocation, inconsistency = -163287 92714453 92714959 431417 430911 NC_060926.1 JAAKGM020000030.1 98.87 True relocation, inconsistency = -35301 92746331 92749753 434840 431418 NC_060926.1 JAAKGM020000030.1 97.69 True relocation, inconsistency = 22402 92722449 92723928 436320 434841 NC_060926.1 JAAKGM020000030.1 99.27 True relocation, inconsistency = 8487 92710354 92713961 439928 436321 NC_060926.1 JAAKGM020000030.1 98.73 True relocation, inconsistency = 151052 92554875 92558695 444353 440535 NC_060926.1 JAAKGM020000030.1 98.87 True relocation, inconsistency = -380046 92932882 92934107 446392 445167 NC_060926.1 JAAKGM020000030.1 99.02 True relocation, inconsistency = -478028 93410217 93410775 447085 446527 NC_060926.1 JAAKGM020000030.1 97.86 True relocation, inconsistency = -1094356 94500858 94504572 450803 447086 NC_060926.1 JAAKGM020000030.1 96.53 True relocation, inconsistency = 1836054 92660195 92661943 455412 453664 NC_060926.1 JAAKGM020000030.1 99.43 True relocation, inconsistency = 51983 92603296 92607723 460329 455901 NC_060926.1 JAAKGM020000030.1 98.98 True relocation, inconsistency = -90729 92687231 92693172 467124 461182 NC_060926.1 JAAKGM020000030.1 98.25 True CONTIG JAAKGM020000030.1 467389 misassembled 49456085 49457675 1591 1 NC_060929.1 JAAKGM020000031.1 98.24 True local misassembly 49459394 49460161 2359 1592 NC_060929.1 JAAKGM020000031.1 98.53 True local misassembly 49456085 49462447 8726 2360 NC_060929.1 JAAKGM020000031.1 98.24 True relocation, inconsistency = 15963 49436318 49440121 12530 8727 NC_060929.1 JAAKGM020000031.1 98.0 True indel: indel (<= 5bp) 49435389 49436095 13458 12752 NC_060929.1 JAAKGM020000031.1 98.3 True local misassembly 49422044 49430179 22046 13911 NC_060929.1 JAAKGM020000031.1 97.14 True relocation, inconsistency = -40422 49458666 49461543 25848 22969 NC_060929.1 JAAKGM020000031.1 97.88 True local misassembly 49456085 49462738 32506 25849 NC_060929.1 JAAKGM020000031.1 97.9 True local misassembly 49457307 49461518 36720 32507 NC_060929.1 JAAKGM020000031.1 97.88 True local misassembly 49456085 49462738 43378 36721 NC_060929.1 JAAKGM020000031.1 97.9 True local misassembly 49458666 49460161 44874 43379 NC_060929.1 JAAKGM020000031.1 98.02 True local misassembly 49456085 49462738 51532 44875 NC_060929.1 JAAKGM020000031.1 98.09 True local misassembly 49457307 49461518 55746 51533 NC_060929.1 JAAKGM020000031.1 98.08 True local misassembly 49454315 49462738 64174 55747 NC_060929.1 JAAKGM020000031.1 98.05 True relocation, inconsistency = 92393 49361281 49361921 64815 64175 NC_060929.1 JAAKGM020000031.1 98.18 True local misassembly 49361237 49363658 67237 64816 NC_060929.1 JAAKGM020000031.1 98.27 True local misassembly 49362640 49364962 69571 67249 NC_060929.1 JAAKGM020000031.1 98.23 True local misassembly 49361281 49363658 71949 69572 NC_060929.1 JAAKGM020000031.1 98.27 True relocation, inconsistency = -91375 49447329 49452655 77279 71950 NC_060929.1 JAAKGM020000031.1 98.33 True local misassembly 49449941 49451549 79764 78156 NC_060929.1 JAAKGM020000031.1 98.32 True indel: stretch of mismatches 49447847 49449884 81858 79821 NC_060929.1 JAAKGM020000031.1 98.18 True indel: indel (<= 5bp) 49447291 49447846 82415 81860 NC_060929.1 JAAKGM020000031.1 95.5 True local misassembly 49446433 49446951 82934 82416 NC_060929.1 JAAKGM020000031.1 98.84 True indel: indel (<= 5bp) 49445185 49446428 84178 82935 NC_060929.1 JAAKGM020000031.1 98.07 True indel: stretch of mismatches 49443445 49445128 85918 84235 NC_060929.1 JAAKGM020000031.1 98.57 True local misassembly 49440144 49440725 86500 85919 NC_060929.1 JAAKGM020000031.1 97.94 True indel: indel (<= 5bp) 49438391 49440143 88255 86503 NC_060929.1 JAAKGM020000031.1 98.17 True indel: stretch of mismatches 49437032 49438334 89614 88312 NC_060929.1 JAAKGM020000031.1 98.16 True indel: stretch of mismatches 49435716 49436975 90930 89671 NC_060929.1 JAAKGM020000031.1 96.03 True local misassembly 49433636 49435378 92673 90931 NC_060929.1 JAAKGM020000031.1 98.57 True local misassembly 49435729 49436975 93976 92730 NC_060929.1 JAAKGM020000031.1 96.03 True relocation, inconsistency = -25815 49454315 49461543 101207 93977 NC_060929.1 JAAKGM020000031.1 98.15 True local misassembly 49457072 49458051 102187 101208 NC_060929.1 JAAKGM020000031.1 98.16 True indel: stretch of mismatches 49455998 49457015 103261 102244 NC_060929.1 JAAKGM020000031.1 97.64 True indel: indel (<= 5bp) 49455442 49455997 103818 103263 NC_060929.1 JAAKGM020000031.1 97.48 True local misassembly 49453051 49454693 105869 104227 NC_060929.1 JAAKGM020000031.1 98.54 True indel: indel (<= 5bp) 49451694 49453050 107228 105872 NC_060929.1 JAAKGM020000031.1 98.38 True indel: indel (<= 5bp) 49449941 49451693 108983 107231 NC_060929.1 JAAKGM020000031.1 98.46 True relocation, inconsistency = -12223 49458666 49462107 112485 109040 NC_060929.1 JAAKGM020000031.1 98.14 True local misassembly 49456676 49462738 118552 112486 NC_060929.1 JAAKGM020000031.1 97.87 True local misassembly 49460025 49462447 120979 118553 NC_060929.1 JAAKGM020000031.1 98.1 True local misassembly 49456085 49462738 127635 120980 NC_060929.1 JAAKGM020000031.1 97.93 True relocation, inconsistency = 15963 49438391 49440121 129366 127636 NC_060929.1 JAAKGM020000031.1 98.23 True indel: stretch of mismatches 49437032 49438334 130725 129423 NC_060929.1 JAAKGM020000031.1 98.39 True local misassembly 49440144 49440710 131348 130782 NC_060929.1 JAAKGM020000031.1 98.94 True indel: indel (<= 5bp) 49438391 49440143 133103 131351 NC_060929.1 JAAKGM020000031.1 98.23 True local misassembly 49433636 49434994 134462 133104 NC_060929.1 JAAKGM020000031.1 98.17 True relocation, inconsistency = -29208 49460025 49462447 137285 134859 NC_060929.1 JAAKGM020000031.1 97.86 True local misassembly 49456085 49462738 143941 137286 NC_060929.1 JAAKGM020000031.1 97.75 True relocation, inconsistency = 19701 49431919 49435955 148405 144370 NC_060929.1 JAAKGM020000031.1 98.12 True CONTIG JAAKGM020000031.1 148411 misassembled 49457293 49461917 4629 1 NC_060929.1 JAAKGM020000032.1 97.84 True local misassembly 49456085 49462724 11273 4630 NC_060929.1 JAAKGM020000032.1 97.77 True local misassembly 49457293 49461518 15501 11274 NC_060929.1 JAAKGM020000032.1 97.79 True local misassembly 49456085 49462724 22145 15502 NC_060929.1 JAAKGM020000032.1 97.79 True local misassembly 49458035 49461518 25631 22146 NC_060929.1 JAAKGM020000032.1 97.95 True local misassembly 49457307 49462107 30436 25632 NC_060929.1 JAAKGM020000032.1 97.93 True local misassembly 49456085 49462738 37094 30437 NC_060929.1 JAAKGM020000032.1 97.81 True local misassembly 49456498 49460161 40758 37095 NC_060929.1 JAAKGM020000032.1 97.81 True fake: not a misassembly (possible transposable element) 49475863 49479571 44493 40789 NC_060929.1 JAAKGM020000032.1 97.63 True fake: not a misassembly (possible transposable element) 49446433 49446951 45050 44532 NC_060929.1 JAAKGM020000032.1 98.84 True indel: indel (<= 5bp) 49445185 49446428 46294 45051 NC_060929.1 JAAKGM020000032.1 97.91 True indel: stretch of mismatches 49443445 49445128 48034 46351 NC_060929.1 JAAKGM020000032.1 98.52 True local misassembly 49440144 49440725 48616 48035 NC_060929.1 JAAKGM020000032.1 97.94 True indel: indel (<= 5bp) 49438391 49440143 50371 48619 NC_060929.1 JAAKGM020000032.1 98.17 True indel: stretch of mismatches 49437032 49438334 51730 50428 NC_060929.1 JAAKGM020000032.1 98.23 True indel: stretch of mismatches 49435729 49436975 53033 51787 NC_060929.1 JAAKGM020000032.1 96.03 True local misassembly 49438391 49440146 54789 53034 NC_060929.1 JAAKGM020000032.1 98.46 True local misassembly 49443091 49445128 56883 54846 NC_060929.1 JAAKGM020000032.1 97.79 True local misassembly 49447291 49447846 57440 56885 NC_060929.1 JAAKGM020000032.1 95.68 True relocation, inconsistency = -14264 49454315 49461543 64682 57452 NC_060929.1 JAAKGM020000032.1 98.05 True local misassembly 49460184 49460767 65266 64683 NC_060929.1 JAAKGM020000032.1 98.53 True indel: indel (<= 5bp) 49458770 49460183 66682 65269 NC_060929.1 JAAKGM020000032.1 98.63 True local misassembly 49448201 49459788 77935 66683 NC_060929.1 JAAKGM020000032.1 95.16 True relocation, inconsistency = -11208 49456085 49459408 81259 77936 NC_060929.1 JAAKGM020000032.1 97.94 True relocation, inconsistency = -9850 49464649 49465901 82545 81293 NC_060929.1 JAAKGM020000032.1 96.81 True local misassembly 49463483 49466318 87783 84952 NC_060929.1 JAAKGM020000032.1 98.13 True local misassembly 49456085 49462738 95184 88527 NC_060929.1 JAAKGM020000032.1 98.11 True local misassembly 49456498 49462738 101566 95322 NC_060929.1 JAAKGM020000032.1 97.81 True CONTIG JAAKGM020000032.1 102323 misassembled 94735615 94736650 1036 1 NC_060927.1 JAAKGM020000033.1 99.23 True translocation 1856243 1857726 2856 1367 NC_060945.1 JAAKGM020000033.1 96.98 True translocation 94763674 94764733 4170 3111 NC_060927.1 JAAKGM020000033.1 97.36 True indel: indel (<= 5bp) 94762730 94763673 5119 4176 NC_060927.1 JAAKGM020000033.1 96.5 True local misassembly 94761676 94762356 5800 5120 NC_060927.1 JAAKGM020000033.1 99.27 True indel: indel (<= 5bp) 94760075 94761674 7400 5801 NC_060927.1 JAAKGM020000033.1 99.12 True indel: indel (> 5bp) 94758314 94760074 9233 7473 NC_060927.1 JAAKGM020000033.1 98.18 True indel: indel (<= 5bp) 94757217 94758313 10333 9237 NC_060927.1 JAAKGM020000033.1 96.26 True relocation, inconsistency = 30504 94723614 94726535 13432 10511 NC_060927.1 JAAKGM020000033.1 98.63 True local misassembly 94722414 94723482 14501 13433 NC_060927.1 JAAKGM020000033.1 98.6 True relocation, inconsistency = -539904 95261598 95262153 15221 14666 NC_060927.1 JAAKGM020000033.1 96.94 True indel: indel (<= 5bp) 95260022 95261597 16798 15223 NC_060927.1 JAAKGM020000033.1 96.76 True indel: indel (<= 5bp) 95259430 95260021 17395 16804 NC_060927.1 JAAKGM020000033.1 97.3 True local misassembly 95258081 95258959 18496 17618 NC_060927.1 JAAKGM020000033.1 98.86 True relocation, inconsistency = 153928 95099357 95103652 23286 18997 NC_060927.1 JAAKGM020000033.1 99.05 True relocation, inconsistency = 362904 94735733 94736452 24006 23287 NC_060927.1 JAAKGM020000033.1 99.18 True relocation, inconsistency = 451137 94282617 94284595 25975 24007 NC_060927.1 JAAKGM020000033.1 96.53 True relocation, inconsistency = 1458900 92817595 92823716 32099 25976 NC_060927.1 JAAKGM020000033.1 97.78 True relocation, inconsistency = 28255 92785555 92788876 35879 32563 NC_060927.1 JAAKGM020000033.1 98.28 True relocation, inconsistency = -1967287 94751246 94752841 37475 35880 NC_060927.1 JAAKGM020000033.1 98.64 True local misassembly 94750612 94751121 38230 37721 NC_060927.1 JAAKGM020000033.1 96.47 True relocation, inconsistency = -348220 95094963 95097979 42101 39083 NC_060927.1 JAAKGM020000033.1 97.62 True relocation, inconsistency = 333163 94760075 94761674 43826 42227 NC_060927.1 JAAKGM020000033.1 99.12 True translocation 3375121 3377682 46807 44250 NC_060937.1 JAAKGM020000033.1 96.06 True translocation 95261598 95262354 47867 47111 NC_060927.1 JAAKGM020000033.1 96.17 True indel: indel (<= 5bp) 95260022 95261518 49439 47943 NC_060927.1 JAAKGM020000033.1 97.53 True indel: indel (<= 5bp) 95259430 95260021 50036 49445 NC_060927.1 JAAKGM020000033.1 97.3 True local misassembly 95258217 95259182 51002 50037 NC_060927.1 JAAKGM020000033.1 99.07 True relocation, inconsistency = 1038181 94214016 94219776 57021 51262 NC_060927.1 JAAKGM020000033.1 99.08 True relocation, inconsistency = -494534 94706730 94708549 58841 57022 NC_060927.1 JAAKGM020000033.1 99.46 True translocation 1908627 1909801 65630 64458 NC_060945.1 JAAKGM020000033.1 96.7 True translocation 94752203 94760075 73476 65631 NC_060927.1 JAAKGM020000033.1 96.54 True translocation 1415445 1416053 74085 73477 NC_060939.1 JAAKGM020000033.1 98.64 True translocation 93926075 93928795 76800 74089 NC_060927.1 JAAKGM020000033.1 97.61 True relocation, inconsistency = -841836 94766982 94767910 77729 76801 NC_060927.1 JAAKGM020000033.1 97.62 True relocation, inconsistency = -26675 94788050 94793656 83340 77730 NC_060927.1 JAAKGM020000033.1 98.21 True relocation, inconsistency = -89423 94864926 94877472 95883 83341 NC_060927.1 JAAKGM020000033.1 98.9 True relocation, inconsistency = 99272 94764600 94765653 96937 95884 NC_060927.1 JAAKGM020000033.1 97.1 True indel: indel (<= 5bp) 94762703 94764598 98833 96938 NC_060927.1 JAAKGM020000033.1 96.52 True indel: indel (<= 5bp) 94760764 94762699 100769 98834 NC_060927.1 JAAKGM020000033.1 98.86 True local misassembly 94758742 94760040 102154 100856 NC_060927.1 JAAKGM020000033.1 98.38 True indel: indel (<= 5bp) 94756662 94758313 104236 102585 NC_060927.1 JAAKGM020000033.1 98.18 True relocation, inconsistency = -104046 94859096 94860228 105848 104716 NC_060927.1 JAAKGM020000033.1 98.68 True indel: indel (<= 5bp) 94858196 94859095 106749 105850 NC_060927.1 JAAKGM020000033.1 99.44 True local misassembly 94857252 94857822 107320 106750 NC_060927.1 JAAKGM020000033.1 99.19 True local misassembly 94852602 94854705 109423 107321 NC_060927.1 JAAKGM020000033.1 97.67 True relocation, inconsistency = 90933 94758687 94761618 112477 109474 NC_060927.1 JAAKGM020000033.1 95.17 True relocation, inconsistency = -503990 95261598 95262354 113556 112800 NC_060927.1 JAAKGM020000033.1 96.04 True indel: indel (<= 5bp) 95260022 95261518 115128 113632 NC_060927.1 JAAKGM020000033.1 97.6 True indel: indel (<= 5bp) 95259430 95260021 115725 115134 NC_060927.1 JAAKGM020000033.1 97.47 True local misassembly 95257901 95259182 117007 115726 NC_060927.1 JAAKGM020000033.1 99.14 True indel: indel (<= 5bp) 95257301 95257900 117612 117013 NC_060927.1 JAAKGM020000033.1 97.0 True relocation, inconsistency = 2620635 92634513 92636575 119775 117703 NC_060927.1 JAAKGM020000033.1 96.43 True relocation, inconsistency = -91360 92724122 92725872 121526 119776 NC_060927.1 JAAKGM020000033.1 97.74 True relocation, inconsistency = -2537266 95260022 95261387 122892 121527 NC_060927.1 JAAKGM020000033.1 97.8 True indel: indel (<= 5bp) 95259430 95260021 123489 122898 NC_060927.1 JAAKGM020000033.1 97.64 True local misassembly 95257901 95259182 124771 123490 NC_060927.1 JAAKGM020000033.1 99.3 True relocation, inconsistency = 150754 95099141 95106648 132777 125270 NC_060927.1 JAAKGM020000033.1 98.38 True relocation, inconsistency = 2245188 92850229 92853036 136501 133694 NC_060927.1 JAAKGM020000033.1 98.29 True relocation, inconsistency = -1905179 94754636 94755407 137273 136502 NC_060927.1 JAAKGM020000033.1 96.52 True local misassembly 94754636 94756589 139693 137735 NC_060927.1 JAAKGM020000033.1 96.53 True relocation, inconsistency = 1548028 93205506 93206297 140795 140004 NC_060927.1 JAAKGM020000033.1 98.48 True indel: indel (<= 5bp) 93203189 93205505 143113 140797 NC_060927.1 JAAKGM020000033.1 99.18 True indel: indel (<= 5bp) 93202208 93203187 144093 143114 NC_060927.1 JAAKGM020000033.1 98.78 True relocation, inconsistency = 410755 92785555 92791182 149990 144364 NC_060927.1 JAAKGM020000033.1 97.76 True relocation, inconsistency = -1967287 94751989 94752841 150843 149991 NC_060927.1 JAAKGM020000033.1 98.94 True translocation 1476031 1480385 155197 150844 NC_060939.1 JAAKGM020000033.1 97.55 True translocation 94813060 94814408 156546 155198 NC_060927.1 JAAKGM020000033.1 98.91 True indel: indel (<= 5bp) 94812166 94813056 157437 156547 NC_060927.1 JAAKGM020000033.1 96.63 True indel: indel (> 5bp) 94811145 94811940 158466 157671 NC_060927.1 JAAKGM020000033.1 96.61 True local misassembly 94809942 94811040 160038 158940 NC_060927.1 JAAKGM020000033.1 98.93 True relocation, inconsistency = -53770 94858890 94863711 164863 160039 NC_060927.1 JAAKGM020000033.1 97.14 True local misassembly 94859096 94859641 165411 164866 NC_060927.1 JAAKGM020000033.1 99.63 True indel: indel (<= 5bp) 94858196 94859095 166312 165413 NC_060927.1 JAAKGM020000033.1 99.44 True local misassembly 94855283 94857822 168852 166313 NC_060927.1 JAAKGM020000033.1 99.02 True relocation, inconsistency = -25609 94879029 94880400 170715 169344 NC_060927.1 JAAKGM020000033.1 98.76 True indel: indel (> 5bp) 94877724 94878829 172014 170909 NC_060927.1 JAAKGM020000033.1 98.64 True local misassembly 94875091 94876977 173901 172015 NC_060927.1 JAAKGM020000033.1 98.78 True indel: indel (<= 5bp) 94871789 94875089 177202 173902 NC_060927.1 JAAKGM020000033.1 98.76 True relocation, inconsistency = 89251 94781808 94782366 177932 177374 NC_060927.1 JAAKGM020000033.1 98.57 True relocation, inconsistency = 19198 94760075 94762144 180467 178398 NC_060927.1 JAAKGM020000033.1 99.03 True relocation, inconsistency = 1937157 92817595 92822867 185786 180518 NC_060927.1 JAAKGM020000033.1 98.29 True relocation, inconsistency = 28255 92785555 92788876 189566 186250 NC_060927.1 JAAKGM020000033.1 98.16 True relocation, inconsistency = -1967287 94751246 94752841 191162 189567 NC_060927.1 JAAKGM020000033.1 98.48 True local misassembly 94750612 94751121 191917 191408 NC_060927.1 JAAKGM020000033.1 96.47 True relocation, inconsistency = -348220 95094963 95097979 195788 192770 NC_060927.1 JAAKGM020000033.1 97.55 True translocation 3441625 3443740 198273 196153 NC_060946.1 JAAKGM020000033.1 96.7 True translocation 94396146 94397417 199738 198467 NC_060927.1 JAAKGM020000033.1 98.67 True relocation, inconsistency = 1307819 93084332 93088326 203733 199739 NC_060927.1 JAAKGM020000033.1 99.07 True relocation, inconsistency = -2027851 95110279 95112182 205637 203734 NC_060927.1 JAAKGM020000033.1 97.94 True relocation, inconsistency = 346600 94762730 94763673 206586 205643 NC_060927.1 JAAKGM020000033.1 96.5 True local misassembly 94761676 94762356 207267 206587 NC_060927.1 JAAKGM020000033.1 99.27 True indel: indel (<= 5bp) 94760075 94761674 208867 207268 NC_060927.1 JAAKGM020000033.1 99.06 True indel: indel (> 5bp) 94758314 94760074 210700 208940 NC_060927.1 JAAKGM020000033.1 98.18 True indel: indel (<= 5bp) 94757217 94758313 211800 210704 NC_060927.1 JAAKGM020000033.1 96.35 True relocation, inconsistency = 39659 94714459 94717380 214899 211978 NC_060927.1 JAAKGM020000033.1 98.67 True local misassembly 94713205 94714327 216022 214900 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 427866 94282617 94284595 218734 216766 NC_060927.1 JAAKGM020000033.1 96.42 True relocation, inconsistency = 1458900 92817595 92823716 224858 218735 NC_060927.1 JAAKGM020000033.1 97.86 True relocation, inconsistency = -2041562 94855283 94858693 228732 225322 NC_060927.1 JAAKGM020000033.1 97.86 True relocation, inconsistency = 102162 94751302 94753120 230551 228733 NC_060927.1 JAAKGM020000033.1 98.32 True translocation 1856243 1857726 232787 231298 NC_060945.1 JAAKGM020000033.1 96.91 True translocation 94763674 94764733 234101 233042 NC_060927.1 JAAKGM020000033.1 97.26 True indel: indel (<= 5bp) 94762730 94763673 235050 234107 NC_060927.1 JAAKGM020000033.1 96.5 True local misassembly 94761676 94762356 235731 235051 NC_060927.1 JAAKGM020000033.1 99.27 True indel: indel (<= 5bp) 94760075 94761674 237331 235732 NC_060927.1 JAAKGM020000033.1 99.06 True indel: indel (> 5bp) 94758314 94760074 239164 237404 NC_060927.1 JAAKGM020000033.1 98.24 True indel: indel (<= 5bp) 94757217 94758313 240264 239168 NC_060927.1 JAAKGM020000033.1 96.08 True relocation, inconsistency = 30504 94723614 94726535 243363 240442 NC_060927.1 JAAKGM020000033.1 98.7 True local misassembly 94722414 94723482 244432 243364 NC_060927.1 JAAKGM020000033.1 98.69 True relocation, inconsistency = -539904 95261598 95262153 245152 244597 NC_060927.1 JAAKGM020000033.1 96.94 True relocation, inconsistency = 2438333 92817595 92822865 250818 245552 NC_060927.1 JAAKGM020000033.1 98.24 True relocation, inconsistency = -2041189 94855908 94858093 253694 251509 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 1992116 92860196 92863791 257294 253695 NC_060927.1 JAAKGM020000033.1 97.17 True relocation, inconsistency = -1893701 94751246 94753742 259945 257449 NC_060927.1 JAAKGM020000033.1 98.64 True local misassembly 94750612 94751121 260700 260191 NC_060927.1 JAAKGM020000033.1 96.47 True relocation, inconsistency = -348220 95094963 95097979 264571 261553 NC_060927.1 JAAKGM020000033.1 97.62 True relocation, inconsistency = 333163 94760075 94761674 266296 264697 NC_060927.1 JAAKGM020000033.1 99.0 True indel: indel (> 5bp) 94758314 94760074 268129 266369 NC_060927.1 JAAKGM020000033.1 98.18 True indel: indel (<= 5bp) 94757413 94758313 269033 268133 NC_060927.1 JAAKGM020000033.1 96.26 True relocation, inconsistency = 39659 94714459 94717753 272328 269034 NC_060927.1 JAAKGM020000033.1 98.54 True local misassembly 94713240 94714327 273416 272329 NC_060927.1 JAAKGM020000033.1 98.81 True local misassembly 94713240 94718720 278953 273594 NC_060927.1 JAAKGM020000033.1 95.61 True relocation, inconsistency = -14813 94722414 94727875 284471 279131 NC_060927.1 JAAKGM020000033.1 95.49 True relocation, inconsistency = -539904 95261598 95262153 285191 284636 NC_060927.1 JAAKGM020000033.1 96.76 True indel: indel (<= 5bp) 95260022 95261597 286768 285193 NC_060927.1 JAAKGM020000033.1 96.7 True indel: indel (<= 5bp) 95259430 95260021 287365 286774 NC_060927.1 JAAKGM020000033.1 97.13 True local misassembly 95258081 95258959 288466 287588 NC_060927.1 JAAKGM020000033.1 98.75 True indel: indel (<= 5bp) 95257284 95257900 289267 288651 NC_060927.1 JAAKGM020000033.1 96.76 True relocation, inconsistency = 511281 94744117 94745926 291196 289344 NC_060927.1 JAAKGM020000033.1 96.71 True relocation, inconsistency = -19849 94757217 94763419 298022 291743 NC_060927.1 JAAKGM020000033.1 96.53 True relocation, inconsistency = 39659 94714459 94717380 301121 298200 NC_060927.1 JAAKGM020000033.1 98.77 True local misassembly 94713205 94714327 302244 301122 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 406873 94303610 94305588 304956 302988 NC_060927.1 JAAKGM020000033.1 96.35 True relocation, inconsistency = 1479893 92817595 92823716 311079 304957 NC_060927.1 JAAKGM020000033.1 97.77 True relocation, inconsistency = -1946710 94757217 94763419 318244 311965 NC_060927.1 JAAKGM020000033.1 96.51 True relocation, inconsistency = 39659 94714459 94717380 321343 318422 NC_060927.1 JAAKGM020000033.1 98.77 True local misassembly 94713205 94714327 322466 321344 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 406873 94303272 94305588 325512 323210 NC_060927.1 JAAKGM020000033.1 96.59 True relocation, inconsistency = 1479883 92817595 92822865 331302 326036 NC_060927.1 JAAKGM020000033.1 98.2 True relocation, inconsistency = -1946710 94757217 94763419 338467 332188 NC_060927.1 JAAKGM020000033.1 96.5 True relocation, inconsistency = 39659 94714459 94717380 341566 338645 NC_060927.1 JAAKGM020000033.1 98.77 True local misassembly 94713205 94714327 342689 341567 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 406873 94303610 94305588 345401 343433 NC_060927.1 JAAKGM020000033.1 96.45 True relocation, inconsistency = 1479893 92817595 92823716 351525 345402 NC_060927.1 JAAKGM020000033.1 97.77 True relocation, inconsistency = 28255 92785555 92788876 355305 351989 NC_060927.1 JAAKGM020000033.1 98.25 True relocation, inconsistency = -1967292 94751246 94752376 356906 355776 NC_060927.1 JAAKGM020000033.1 99.03 True local misassembly 94750612 94751121 357661 357152 NC_060927.1 JAAKGM020000033.1 96.47 True relocation, inconsistency = -348220 95094963 95097979 361532 358514 NC_060927.1 JAAKGM020000033.1 97.62 True relocation, inconsistency = 333163 94760075 94761674 363257 361658 NC_060927.1 JAAKGM020000033.1 99.12 True translocation 1998293 1999985 365368 363681 NC_060937.1 JAAKGM020000033.1 96.57 True translocation 92724122 92726070 367504 365556 NC_060927.1 JAAKGM020000033.1 97.79 True relocation, inconsistency = -2537266 95260022 95261387 368870 367505 NC_060927.1 JAAKGM020000033.1 97.53 True indel: indel (<= 5bp) 95259430 95260021 369467 368876 NC_060927.1 JAAKGM020000033.1 97.3 True local misassembly 95258217 95259182 370433 369468 NC_060927.1 JAAKGM020000033.1 99.07 True relocation, inconsistency = 153771 95098429 95104186 376452 370693 NC_060927.1 JAAKGM020000033.1 99.01 True relocation, inconsistency = 389879 94706730 94708549 378272 376453 NC_060927.1 JAAKGM020000033.1 99.46 True relocation, inconsistency = 490651 94213035 94214786 381311 379565 NC_060927.1 JAAKGM020000033.1 98.8 True translocation 1908627 1909801 385061 383889 NC_060945.1 JAAKGM020000033.1 96.7 True translocation 94752203 94760075 392907 385062 NC_060927.1 JAAKGM020000033.1 96.54 True translocation 1415445 1416053 393516 392908 NC_060939.1 JAAKGM020000033.1 98.64 True translocation 95113224 95117905 398538 393867 NC_060927.1 JAAKGM020000033.1 96.65 True relocation, inconsistency = 236752 94872239 94876471 402771 398539 NC_060927.1 JAAKGM020000033.1 98.97 True local misassembly 94864637 94877472 415598 402772 NC_060927.1 JAAKGM020000033.1 98.8 True relocation, inconsistency = 99267 94764600 94765369 416368 415599 NC_060927.1 JAAKGM020000033.1 97.16 True indel: indel (<= 5bp) 94762703 94764598 418264 416369 NC_060927.1 JAAKGM020000033.1 96.52 True indel: indel (<= 5bp) 94760764 94762699 420200 418265 NC_060927.1 JAAKGM020000033.1 98.86 True local misassembly 94758742 94760040 421585 420287 NC_060927.1 JAAKGM020000033.1 98.38 True indel: indel (<= 5bp) 94756662 94758313 423667 422016 NC_060927.1 JAAKGM020000033.1 98.18 True relocation, inconsistency = -104046 94859096 94860228 425279 424147 NC_060927.1 JAAKGM020000033.1 98.68 True indel: indel (<= 5bp) 94858196 94859095 426180 425281 NC_060927.1 JAAKGM020000033.1 99.44 True local misassembly 94857252 94857822 426751 426181 NC_060927.1 JAAKGM020000033.1 99.25 True local misassembly 94852602 94854705 428854 426752 NC_060927.1 JAAKGM020000033.1 97.72 True relocation, inconsistency = 90933 94758687 94761618 431908 428905 NC_060927.1 JAAKGM020000033.1 95.17 True relocation, inconsistency = -503990 95261598 95262354 432987 432231 NC_060927.1 JAAKGM020000033.1 96.17 True indel: indel (<= 5bp) 95260022 95261518 434559 433063 NC_060927.1 JAAKGM020000033.1 97.6 True indel: indel (<= 5bp) 95259430 95260021 435156 434565 NC_060927.1 JAAKGM020000033.1 97.47 True local misassembly 95257901 95259182 436438 435157 NC_060927.1 JAAKGM020000033.1 99.22 True translocation 3375121 3378159 439691 436657 NC_060937.1 JAAKGM020000033.1 96.12 True translocation 95261598 95262354 440751 439995 NC_060927.1 JAAKGM020000033.1 96.04 True indel: indel (<= 5bp) 95260022 95261518 442323 440827 NC_060927.1 JAAKGM020000033.1 97.8 True indel: indel (<= 5bp) 95259430 95260021 442920 442329 NC_060927.1 JAAKGM020000033.1 97.64 True local misassembly 95257901 95259182 444202 442921 NC_060927.1 JAAKGM020000033.1 99.22 True relocation, inconsistency = 150754 95099141 95106648 452208 444701 NC_060927.1 JAAKGM020000033.1 98.38 True relocation, inconsistency = 2245188 92850339 92853036 455822 453125 NC_060927.1 JAAKGM020000033.1 98.25 True relocation, inconsistency = -1748466 94593831 94598804 460788 455823 NC_060927.1 JAAKGM020000033.1 97.07 True relocation, inconsistency = 1387223 93205506 93206297 461890 461099 NC_060927.1 JAAKGM020000033.1 98.48 True indel: indel (<= 5bp) 93203189 93205505 464208 461892 NC_060927.1 JAAKGM020000033.1 99.14 True indel: indel (<= 5bp) 93202208 93203187 465188 464209 NC_060927.1 JAAKGM020000033.1 98.78 True relocation, inconsistency = 410755 92785555 92791182 471085 465459 NC_060927.1 JAAKGM020000033.1 97.76 True relocation, inconsistency = -1967287 94751989 94752841 471938 471086 NC_060927.1 JAAKGM020000033.1 98.94 True relocation, inconsistency = -346211 95096402 95098199 473735 471939 NC_060927.1 JAAKGM020000033.1 97.59 True relocation, inconsistency = 225292 94866434 94871109 478408 473736 NC_060927.1 JAAKGM020000033.1 98.14 True local misassembly 94859096 94859641 480143 479598 NC_060927.1 JAAKGM020000033.1 99.63 True indel: indel (<= 5bp) 94858196 94859095 481044 480145 NC_060927.1 JAAKGM020000033.1 99.33 True local misassembly 94855283 94857822 483584 481045 NC_060927.1 JAAKGM020000033.1 99.02 True relocation, inconsistency = -25609 94879029 94880400 485447 484076 NC_060927.1 JAAKGM020000033.1 98.91 True indel: indel (> 5bp) 94877724 94878829 486746 485641 NC_060927.1 JAAKGM020000033.1 98.64 True local misassembly 94875091 94876977 488633 486747 NC_060927.1 JAAKGM020000033.1 98.78 True relocation, inconsistency = -231480 95101686 95106398 493509 488806 NC_060927.1 JAAKGM020000033.1 97.54 True translocation 530393 531368 494887 493902 NC_060937.1 JAAKGM020000033.1 96.04 True translocation 94786363 94787853 498312 496822 NC_060927.1 JAAKGM020000033.1 97.32 True indel: indel (<= 5bp) 94785117 94786235 499554 498436 NC_060927.1 JAAKGM020000033.1 97.86 True indel: indel (> 5bp) 94783363 94784743 501318 499938 NC_060927.1 JAAKGM020000033.1 95.87 True local misassembly 94781659 94782873 503282 502068 NC_060927.1 JAAKGM020000033.1 98.82 True relocation, inconsistency = 21072 94757374 94760586 506566 503283 NC_060927.1 JAAKGM020000033.1 96.01 True relocation, inconsistency = -119251 94867316 94875687 515873 507504 NC_060927.1 JAAKGM020000033.1 98.22 True relocation, inconsistency = 108139 94757569 94759176 517481 515874 NC_060927.1 JAAKGM020000033.1 97.29 True local misassembly 94756091 94757568 519206 517729 NC_060927.1 JAAKGM020000033.1 96.35 True relocation, inconsistency = 77953 94676893 94678134 520451 519210 NC_060927.1 JAAKGM020000033.1 97.14 True relocation, inconsistency = -199083 94866929 94875975 529491 520452 NC_060927.1 JAAKGM020000033.1 98.14 True relocation, inconsistency = 104504 94761253 94761806 530663 530110 NC_060927.1 JAAKGM020000033.1 98.38 True indel: indel (<= 5bp) 94760305 94761251 531610 530664 NC_060927.1 JAAKGM020000033.1 97.78 True relocation, inconsistency = 1093070 93664487 93666867 534358 531978 NC_060927.1 JAAKGM020000033.1 97.3 True relocation, inconsistency = -1472730 95133112 95137216 538453 534359 NC_060927.1 JAAKGM020000033.1 97.47 True relocation, inconsistency = 348834 94781691 94783253 541045 539478 NC_060927.1 JAAKGM020000033.1 97.89 True relocation, inconsistency = 2152334 92626788 92629356 543614 541046 NC_060927.1 JAAKGM020000033.1 98.68 True local misassembly 92624949 92626787 545921 544083 NC_060927.1 JAAKGM020000033.1 98.48 True local misassembly 92622722 92624948 548400 546174 NC_060927.1 JAAKGM020000033.1 96.54 True relocation, inconsistency = -2183082 94804312 94805430 549892 548774 NC_060927.1 JAAKGM020000033.1 97.77 True indel: indel (> 5bp) 94802558 94803938 551656 550276 NC_060927.1 JAAKGM020000033.1 95.8 True local misassembly 94800886 94802068 553588 552406 NC_060927.1 JAAKGM020000033.1 98.75 True relocation, inconsistency = 1947624 92850617 92853261 556233 553589 NC_060927.1 JAAKGM020000033.1 98.68 True relocation, inconsistency = -1902192 94751259 94752383 557783 556659 NC_060927.1 JAAKGM020000033.1 99.2 True relocation, inconsistency = 72292 94673953 94678134 562787 558616 NC_060927.1 JAAKGM020000033.1 96.99 True relocation, inconsistency = -88602 94761592 94762473 563750 562869 NC_060927.1 JAAKGM020000033.1 99.32 True indel: indel (<= 5bp) 94760619 94761251 564721 564089 NC_060927.1 JAAKGM020000033.1 97.86 True relocation, inconsistency = -13843 94772687 94774461 566496 564722 NC_060927.1 JAAKGM020000033.1 99.38 True local misassembly 94771905 94772686 567651 566870 NC_060927.1 JAAKGM020000033.1 98.59 True indel: indel (<= 5bp) 94770556 94771899 568995 567652 NC_060927.1 JAAKGM020000033.1 96.58 True local misassembly 94769108 94770042 570442 569508 NC_060927.1 JAAKGM020000033.1 97.86 True relocation, inconsistency = -109739 94873194 94878846 576095 570443 NC_060927.1 JAAKGM020000033.1 98.05 True indel: indel (<= 5bp) 94871744 94873190 577542 576096 NC_060927.1 JAAKGM020000033.1 99.52 True indel: indel (<= 5bp) 94867689 94871742 581596 577543 NC_060927.1 JAAKGM020000033.1 99.01 True local misassembly 94866085 94867315 582827 581597 NC_060927.1 JAAKGM020000033.1 98.62 True local misassembly 94864743 94865561 583791 582973 NC_060927.1 JAAKGM020000033.1 97.51 True relocation, inconsistency = 2112924 92746000 92751818 589626 583792 NC_060927.1 JAAKGM020000033.1 96.18 True relocation, inconsistency = -1980274 94724272 94725939 591623 589961 NC_060927.1 JAAKGM020000033.1 96.7 True local misassembly 94725028 94726156 592749 591624 NC_060927.1 JAAKGM020000033.1 97.53 True relocation, inconsistency = 509431 94213037 94215596 595309 592750 NC_060927.1 JAAKGM020000033.1 99.02 True local misassembly 94213035 94214786 598271 596525 NC_060927.1 JAAKGM020000033.1 98.74 True translocation 1908627 1909801 602021 600849 NC_060945.1 JAAKGM020000033.1 96.7 True translocation 94754562 94760075 607550 602022 NC_060927.1 JAAKGM020000033.1 97.16 True relocation, inconsistency = 28251 94724936 94726310 608925 607551 NC_060927.1 JAAKGM020000033.1 98.56 True relocation, inconsistency = -135293 94856833 94860228 612280 608926 NC_060927.1 JAAKGM020000033.1 96.85 True relocation, inconsistency = -257124 95111821 95113347 614416 612890 NC_060927.1 JAAKGM020000033.1 98.56 True relocation, inconsistency = 356154 94752203 94755579 617839 614504 NC_060927.1 JAAKGM020000033.1 96.01 True translocation 1415484 1416053 618409 617840 NC_060939.1 JAAKGM020000033.1 98.64 True translocation 93073502 93074289 619197 618410 NC_060927.1 JAAKGM020000033.1 97.14 True relocation, inconsistency = -1789287 94856833 94862788 625111 619198 NC_060927.1 JAAKGM020000033.1 96.68 True translocation 1415445 1416473 626318 625290 NC_060939.1 JAAKGM020000033.1 98.64 True translocation 93917222 93918738 627833 626322 NC_060927.1 JAAKGM020000033.1 96.65 True relocation, inconsistency = -962012 94864637 94879233 642047 627834 NC_060927.1 JAAKGM020000033.1 95.74 True relocation, inconsistency = 99267 94764600 94765369 642817 642048 NC_060927.1 JAAKGM020000033.1 97.16 True indel: indel (<= 5bp) 94762703 94764598 644713 642818 NC_060927.1 JAAKGM020000033.1 96.47 True indel: indel (<= 5bp) 94761986 94762699 645427 644714 NC_060927.1 JAAKGM020000033.1 97.76 True local misassembly 94760764 94761612 646276 645428 NC_060927.1 JAAKGM020000033.1 99.53 True local misassembly 94758742 94760040 647661 646363 NC_060927.1 JAAKGM020000033.1 98.38 True indel: indel (<= 5bp) 94756662 94758313 649743 648092 NC_060927.1 JAAKGM020000033.1 98.12 True relocation, inconsistency = -104046 94859096 94860228 651355 650223 NC_060927.1 JAAKGM020000033.1 98.59 True indel: indel (<= 5bp) 94858196 94859095 652256 651357 NC_060927.1 JAAKGM020000033.1 99.44 True local misassembly 94857252 94857822 652827 652257 NC_060927.1 JAAKGM020000033.1 99.25 True local misassembly 94852602 94854705 654930 652828 NC_060927.1 JAAKGM020000033.1 97.72 True relocation, inconsistency = 90933 94760075 94761618 656524 654981 NC_060927.1 JAAKGM020000033.1 99.16 True relocation, inconsistency = -504062 95261598 95262354 659063 658307 NC_060927.1 JAAKGM020000033.1 96.17 True indel: indel (<= 5bp) 95260022 95261518 660635 659139 NC_060927.1 JAAKGM020000033.1 97.6 True relocation, inconsistency = 581937 94674562 94677586 664158 661134 NC_060927.1 JAAKGM020000033.1 97.75 True relocation, inconsistency = 1988413 92685223 92686148 665084 664159 NC_060927.1 JAAKGM020000033.1 96.99 True relocation, inconsistency = -40848 92724122 92726070 667033 665085 NC_060927.1 JAAKGM020000033.1 97.79 True relocation, inconsistency = -2537266 95260022 95261387 668399 667034 NC_060927.1 JAAKGM020000033.1 97.73 True indel: indel (<= 5bp) 95259430 95260021 668996 668405 NC_060927.1 JAAKGM020000033.1 97.47 True local misassembly 95257901 95259182 670278 668997 NC_060927.1 JAAKGM020000033.1 99.3 True relocation, inconsistency = 150754 95098434 95106648 678991 670777 NC_060927.1 JAAKGM020000033.1 98.47 True relocation, inconsistency = 1794235 93297660 93304198 685529 678992 NC_060927.1 JAAKGM020000033.1 98.96 True relocation, inconsistency = 505796 92789753 92791182 687640 686211 NC_060927.1 JAAKGM020000033.1 96.99 True indel: indel (<= 5bp) 92789107 92789752 688291 687646 NC_060927.1 JAAKGM020000033.1 98.14 True indel: indel (<= 5bp) 92788527 92789105 688870 688292 NC_060927.1 JAAKGM020000033.1 98.62 True local misassembly 92787101 92788148 689918 688871 NC_060927.1 JAAKGM020000033.1 98.85 True relocation, inconsistency = -1966909 94751259 94753683 692669 690245 NC_060927.1 JAAKGM020000033.1 99.13 True local misassembly 94754636 94756546 694585 692670 NC_060927.1 JAAKGM020000033.1 96.43 True relocation, inconsistency = 434867 94314523 94315460 699831 698894 NC_060927.1 JAAKGM020000033.1 98.93 True local misassembly 94312723 94314144 701253 699832 NC_060927.1 JAAKGM020000033.1 99.16 True relocation, inconsistency = -804800 95112849 95117483 705926 701293 NC_060927.1 JAAKGM020000033.1 98.99 True relocation, inconsistency = 253586 94856003 94859262 709191 705927 NC_060927.1 JAAKGM020000033.1 97.01 True local misassembly 94851819 94852332 709705 709192 NC_060927.1 JAAKGM020000033.1 98.39 True translocation 1415104 1416473 711280 709911 NC_060939.1 JAAKGM020000033.1 98.39 True translocation 94617363 94618666 712662 711360 NC_060927.1 JAAKGM020000033.1 98.25 True relocation, inconsistency = -165512 94778624 94782874 716911 712663 NC_060927.1 JAAKGM020000033.1 97.3 True relocation, inconsistency = -326121 95100958 95104744 720701 716912 NC_060927.1 JAAKGM020000033.1 98.68 True relocation, inconsistency = 940592 94158545 94159614 722522 721453 NC_060927.1 JAAKGM020000033.1 98.97 True local misassembly 94158545 94159288 725650 724907 NC_060927.1 JAAKGM020000033.1 98.52 True relocation, inconsistency = -552131 94706633 94709306 729693 727020 NC_060927.1 JAAKGM020000033.1 99.36 True relocation, inconsistency = 1604825 93087512 93095669 743988 735832 NC_060927.1 JAAKGM020000033.1 98.69 True relocation, inconsistency = -1771463 94858196 94858922 744767 744041 NC_060927.1 JAAKGM020000033.1 99.17 True local misassembly 94856015 94857822 746575 744768 NC_060927.1 JAAKGM020000033.1 98.84 True local misassembly 94855021 94855635 747190 746576 NC_060927.1 JAAKGM020000033.1 98.86 True local misassembly 94852624 94854560 749955 748019 NC_060927.1 JAAKGM020000033.1 97.99 True relocation, inconsistency = 141984 94709878 94710639 750717 749956 NC_060927.1 JAAKGM020000033.1 97.92 True local misassembly 94709213 94709877 751759 751095 NC_060927.1 JAAKGM020000033.1 98.73 True translocation 419909 421627 753481 751760 NC_060937.1 JAAKGM020000033.1 95.14 True translocation 94341407 94342781 758367 756993 NC_060927.1 JAAKGM020000033.1 99.13 True relocation, inconsistency = 1550422 92785555 92790505 763796 758847 NC_060927.1 JAAKGM020000033.1 97.7 True relocation, inconsistency = -1928372 94712956 94713926 764767 763797 NC_060927.1 JAAKGM020000033.1 97.63 True relocation, inconsistency = -75648 94783754 94788603 769619 764768 NC_060927.1 JAAKGM020000033.1 96.44 True translocation 4653856 4654836 770754 769765 NC_060937.1 JAAKGM020000033.1 96.05 True translocation 92626788 92629788 773755 770755 NC_060927.1 JAAKGM020000033.1 97.97 True local misassembly 92624949 92626787 775972 774134 NC_060927.1 JAAKGM020000033.1 98.31 True relocation, inconsistency = -2177739 94794830 94802071 783706 776589 NC_060927.1 JAAKGM020000033.1 95.74 True relocation, inconsistency = 1942728 92851313 92852101 784495 783707 NC_060927.1 JAAKGM020000033.1 99.13 True indel: indel (<= 5bp) 92850617 92851311 785190 784496 NC_060927.1 JAAKGM020000033.1 99.28 True local misassembly 92848865 92850616 787320 785569 NC_060927.1 JAAKGM020000033.1 99.03 True relocation, inconsistency = -1877306 94724657 94726106 788834 787385 NC_060927.1 JAAKGM020000033.1 97.25 True local misassembly 94716619 94717756 789972 788835 NC_060927.1 JAAKGM020000033.1 98.92 True relocation, inconsistency = -143692 94856153 94860310 794131 789973 NC_060927.1 JAAKGM020000033.1 97.48 True relocation, inconsistency = 96242 94756409 94759910 797638 794132 NC_060927.1 JAAKGM020000033.1 98.5 True relocation, inconsistency = -11508 94761800 94767358 803765 798197 NC_060927.1 JAAKGM020000033.1 97.26 True relocation, inconsistency = -109362 94860107 94871161 815201 803766 NC_060927.1 JAAKGM020000033.1 95.18 True local misassembly 94851843 94853518 816877 815202 NC_060927.1 JAAKGM020000033.1 98.34 True relocation, inconsistency = 62883 94783754 94788603 822085 817234 NC_060927.1 JAAKGM020000033.1 96.42 True relocation, inconsistency = 1930007 92850693 92852742 825139 823090 NC_060927.1 JAAKGM020000033.1 98.59 True local misassembly 92848854 92850692 827356 825518 NC_060927.1 JAAKGM020000033.1 98.31 True relocation, inconsistency = -1953834 94794830 94802071 835090 827973 NC_060927.1 JAAKGM020000033.1 95.72 True relocation, inconsistency = 2166633 92627408 92628196 835879 835091 NC_060927.1 JAAKGM020000033.1 99.26 True indel: indel (<= 5bp) 92626712 92627406 836574 835880 NC_060927.1 JAAKGM020000033.1 99.14 True local misassembly 92625045 92626711 838619 836953 NC_060927.1 JAAKGM020000033.1 99.03 True relocation, inconsistency = -2134335 94754276 94759379 843746 838620 NC_060927.1 JAAKGM020000033.1 96.78 True relocation, inconsistency = -104032 94856323 94858307 845736 843747 NC_060927.1 JAAKGM020000033.1 97.38 True relocation, inconsistency = 96247 94756409 94760075 849408 845737 NC_060927.1 JAAKGM020000033.1 98.47 True relocation, inconsistency = -11508 94761054 94767358 856279 849967 NC_060927.1 JAAKGM020000033.1 97.29 True relocation, inconsistency = -116481 94862568 94877534 870871 856280 NC_060927.1 JAAKGM020000033.1 95.99 True relocation, inconsistency = 103278 94758539 94759289 871622 870872 NC_060927.1 JAAKGM020000033.1 95.87 True local misassembly 94757251 94758168 873301 872384 NC_060927.1 JAAKGM020000033.1 96.51 True relocation, inconsistency = -102532 94859096 94859782 873988 873302 NC_060927.1 JAAKGM020000033.1 99.13 True indel: indel (<= 5bp) 94858196 94859095 874889 873990 NC_060927.1 JAAKGM020000033.1 99.0 True relocation, inconsistency = 2053111 92801455 92804722 878519 875252 NC_060927.1 JAAKGM020000033.1 98.78 True indel: indel (<= 5bp) 92800630 92801451 879341 878520 NC_060927.1 JAAKGM020000033.1 98.91 True indel: indel (<= 5bp) 92799809 92800629 880163 879343 NC_060927.1 JAAKGM020000033.1 97.56 True indel: indel (<= 5bp) 92798690 92799808 881287 880169 NC_060927.1 JAAKGM020000033.1 97.41 True relocation, inconsistency = -2075129 94872676 94873426 882430 881680 NC_060927.1 JAAKGM020000033.1 97.2 True local misassembly 94871553 94872297 883175 882431 NC_060927.1 JAAKGM020000033.1 95.3 True indel: indel (<= 5bp) 94870081 94871547 884642 883176 NC_060927.1 JAAKGM020000033.1 98.81 True relocation, inconsistency = 2239140 92626661 92630940 888919 884643 NC_060927.1 JAAKGM020000033.1 97.11 True relocation, inconsistency = -2247706 94873046 94874366 890245 888920 NC_060927.1 JAAKGM020000033.1 98.02 True relocation, inconsistency = -256003 95121883 95128514 897411 890780 NC_060927.1 JAAKGM020000033.1 99.16 True relocation, inconsistency = 17781 95100991 95103941 900525 897572 NC_060927.1 JAAKGM020000033.1 98.26 True relocation, inconsistency = 1795782 93297720 93305208 908013 900526 NC_060927.1 JAAKGM020000033.1 99.0 True translocation 3159917 3160799 909116 908234 NC_060946.1 JAAKGM020000033.1 96.6 True translocation 93787723 93789415 912718 911026 NC_060927.1 JAAKGM020000033.1 98.05 True relocation, inconsistency = -1071252 94858196 94858922 913497 912771 NC_060927.1 JAAKGM020000033.1 99.04 True local misassembly 94857107 94857822 914213 913498 NC_060927.1 JAAKGM020000033.1 98.54 True local misassembly 94851819 94854560 916955 914214 NC_060927.1 JAAKGM020000033.1 98.4 True translocation 1415146 1416473 918488 917161 NC_060939.1 JAAKGM020000033.1 98.57 True translocation 94189943 94191852 920433 918524 NC_060927.1 JAAKGM020000033.1 98.17 True relocation, inconsistency = 1451254 92737163 92738257 921959 920865 NC_060927.1 JAAKGM020000033.1 98.9 True indel: indel (<= 5bp) 92736467 92737161 922654 921960 NC_060927.1 JAAKGM020000033.1 99.28 True relocation, inconsistency = -2140204 94863418 94876037 935903 923288 NC_060927.1 JAAKGM020000033.1 98.37 True relocation, inconsistency = 2044258 92817595 92819159 937468 935904 NC_060927.1 JAAKGM020000033.1 99.33 True local misassembly 92814724 92816509 940002 938217 NC_060927.1 JAAKGM020000033.1 98.77 True indel: indel (<= 5bp) 92811575 92814722 943150 940003 NC_060927.1 JAAKGM020000033.1 99.05 True local misassembly 92810284 92811196 944063 943151 NC_060927.1 JAAKGM020000033.1 99.01 True relocation, inconsistency = -194498 93002914 93004307 945930 944538 NC_060927.1 JAAKGM020000033.1 97.54 True relocation, inconsistency = -1811541 94809044 94814454 951344 945931 NC_060927.1 JAAKGM020000033.1 96.87 True local misassembly 94811145 94812411 952611 951345 NC_060927.1 JAAKGM020000033.1 98.81 True indel: indel (<= 5bp) 94810295 94811144 953462 952613 NC_060927.1 JAAKGM020000033.1 98.0 True indel: indel (<= 5bp) 94809597 94810289 954155 953463 NC_060927.1 JAAKGM020000033.1 97.26 True local misassembly 94808200 94809596 955929 954533 NC_060927.1 JAAKGM020000033.1 99.14 True indel: indel (<= 5bp) 94807055 94808196 957071 955930 NC_060927.1 JAAKGM020000033.1 98.16 True indel: indel (> 5bp) 94806109 94806945 957933 957097 NC_060927.1 JAAKGM020000033.1 96.56 True relocation, inconsistency = -328786 95131596 95134894 961226 957934 NC_060927.1 JAAKGM020000033.1 98.21 True relocation, inconsistency = 309195 94820440 94822069 963187 961558 NC_060927.1 JAAKGM020000033.1 97.54 True relocation, inconsistency = -56768 94865388 94877207 974642 963188 NC_060927.1 JAAKGM020000033.1 95.85 True fake: not a misassembly (possible transposable element) 95263470 95264566 976316 975220 NC_060927.1 JAAKGM020000033.1 98.09 True fake: not a misassembly (possible transposable element) 94860659 94863687 979546 976597 NC_060927.1 JAAKGM020000033.1 95.81 True relocation, inconsistency = 631084 94227876 94229574 981244 979547 NC_060927.1 JAAKGM020000033.1 98.6 True relocation, inconsistency = 1585234 92638765 92642641 985126 981245 NC_060927.1 JAAKGM020000033.1 97.66 True relocation, inconsistency = -2490499 95128251 95129263 986139 985127 NC_060927.1 JAAKGM020000033.1 97.0 True indel: indel (<= 5bp) 95127224 95128130 987162 986256 NC_060927.1 JAAKGM020000033.1 95.81 True relocation, inconsistency = 307731 94817402 94819271 989253 987384 NC_060927.1 JAAKGM020000033.1 98.07 True local misassembly 94815533 94817024 990745 989254 NC_060927.1 JAAKGM020000033.1 97.52 True local misassembly 94814409 94815154 991491 990746 NC_060927.1 JAAKGM020000033.1 97.45 True indel: indel (<= 5bp) 94813658 94814403 992237 991492 NC_060927.1 JAAKGM020000033.1 97.72 True relocation, inconsistency = -60885 94873917 94874537 992863 992243 NC_060927.1 JAAKGM020000033.1 97.91 True indel: indel (> 5bp) 94870977 94873832 995719 992864 NC_060927.1 JAAKGM020000033.1 99.3 True indel: indel (<= 5bp) 94867982 94870975 998713 995720 NC_060927.1 JAAKGM020000033.1 99.1 True local misassembly 94860081 94861123 999882 998840 NC_060927.1 JAAKGM020000033.1 98.66 True relocation, inconsistency = -19703 94874038 94879249 1005632 1000417 NC_060927.1 JAAKGM020000033.1 96.53 True local misassembly 94871549 94875224 1009619 1005939 NC_060927.1 JAAKGM020000033.1 97.63 True local misassembly 94863187 94874544 1020604 1009620 NC_060927.1 JAAKGM020000033.1 95.45 True relocation, inconsistency = 2071692 92790344 92791073 1021755 1021026 NC_060927.1 JAAKGM020000033.1 98.18 True local misassembly 92785560 92791845 1028047 1021756 NC_060927.1 JAAKGM020000033.1 97.65 True translocation 1373848 1377584 1031778 1028048 NC_060939.1 JAAKGM020000033.1 96.96 True translocation 94775770 94777255 1033269 1031779 NC_060927.1 JAAKGM020000033.1 97.81 True relocation, inconsistency = -383092 95154850 95158361 1037281 1033770 NC_060927.1 JAAKGM020000033.1 97.75 True fake: not a misassembly (possible transposable element) 2965021 2966377 1038969 1037613 NC_060946.1 JAAKGM020000033.1 97.27 True fake: not a misassembly (possible transposable element) 95151686 95155790 1043065 1038970 NC_060927.1 JAAKGM020000033.1 97.59 True local misassembly 95148875 95150393 1046002 1044484 NC_060927.1 JAAKGM020000033.1 99.21 True indel: indel (<= 5bp) 95148217 95148874 1046661 1046004 NC_060927.1 JAAKGM020000033.1 96.5 True local misassembly 95146281 95147459 1047840 1046662 NC_060927.1 JAAKGM020000033.1 98.3 True indel: indel (<= 5bp) 95144557 95146279 1049563 1047841 NC_060927.1 JAAKGM020000033.1 98.67 True translocation 148200 149021 1050424 1049603 NC_060937.1 JAAKGM020000033.1 96.47 True translocation 2963847 2966367 1053316 1050802 NC_060946.1 JAAKGM020000033.1 97.35 True translocation 95013149 95015587 1055760 1053317 NC_060927.1 JAAKGM020000033.1 97.03 True translocation 2992165 2996645 1060231 1055761 NC_060946.1 JAAKGM020000033.1 96.56 True translocation 1287585 1288745 1061387 1060232 NC_060939.1 JAAKGM020000033.1 96.21 True translocation 95152313 95156920 1065988 1061388 NC_060927.1 JAAKGM020000033.1 98.03 True local misassembly 95144557 95147173 1068605 1065989 NC_060927.1 JAAKGM020000033.1 98.83 True relocation, inconsistency = 287507 94854169 94857007 1071569 1068648 NC_060927.1 JAAKGM020000033.1 95.37 True relocation, inconsistency = 2001503 92848119 92852665 1076121 1071570 NC_060927.1 JAAKGM020000033.1 96.45 True relocation, inconsistency = -1867763 94714774 94715881 1077229 1076122 NC_060927.1 JAAKGM020000033.1 99.38 True relocation, inconsistency = 1975662 92737731 92739111 1078605 1077230 NC_060927.1 JAAKGM020000033.1 98.12 True relocation, inconsistency = -55787 92791104 92792474 1081019 1079649 NC_060927.1 JAAKGM020000033.1 99.42 True translocation 3043900 3044965 1082783 1081718 NC_060946.1 JAAKGM020000033.1 96.81 True translocation 94758984 94760075 1084901 1083810 NC_060927.1 JAAKGM020000033.1 99.36 True relocation, inconsistency = 231868 94521233 94526876 1090784 1085141 NC_060927.1 JAAKGM020000033.1 98.69 True translocation 1786482 1787310 1091608 1090785 NC_060945.1 JAAKGM020000033.1 95.32 True translocation 93693844 93694513 1093703 1093034 NC_060927.1 JAAKGM020000033.1 98.96 True local misassembly 93690505 93693843 1097419 1094081 NC_060927.1 JAAKGM020000033.1 98.95 True translocation 654869 656004 1099088 1097958 NC_060937.1 JAAKGM020000033.1 97.8 True translocation 94751606 94753960 1101646 1099288 NC_060927.1 JAAKGM020000033.1 97.63 True relocation, inconsistency = 10345 94740414 94741260 1102493 1101647 NC_060927.1 JAAKGM020000033.1 98.62 True relocation, inconsistency = 1995623 92742162 92744718 1105122 1102566 NC_060927.1 JAAKGM020000033.1 97.65 True local misassembly 92735836 92741907 1111816 1105745 NC_060927.1 JAAKGM020000033.1 98.44 True indel: indel (> 5bp) 92734723 92735609 1112937 1112051 NC_060927.1 JAAKGM020000033.1 97.52 True translocation 228986 230302 1114941 1113634 NC_060937.1 JAAKGM020000033.1 95.6 True translocation 1476790 1481073 1120176 1115904 NC_060939.1 JAAKGM020000033.1 96.46 True translocation 94724032 94725287 1121435 1120180 NC_060927.1 JAAKGM020000033.1 96.5 True relocation, inconsistency = 1028097 93693844 93694513 1123526 1122857 NC_060927.1 JAAKGM020000033.1 98.96 True local misassembly 93690505 93693843 1127242 1123904 NC_060927.1 JAAKGM020000033.1 98.89 True relocation, inconsistency = 254231 93434600 93435735 1128911 1127781 NC_060927.1 JAAKGM020000033.1 97.8 True relocation, inconsistency = -1319560 94751259 94753960 1131816 1129111 NC_060927.1 JAAKGM020000033.1 97.97 True relocation, inconsistency = 2150537 92598650 92600397 1133885 1132141 NC_060927.1 JAAKGM020000033.1 98.12 True relocation, inconsistency = -2195384 94788950 94794033 1138960 1133886 NC_060927.1 JAAKGM020000033.1 96.66 True relocation, inconsistency = 1728140 93059031 93060134 1140734 1139636 NC_060927.1 JAAKGM020000033.1 97.74 True relocation, inconsistency = -1695161 94751259 94753960 1143671 1140966 NC_060927.1 JAAKGM020000033.1 97.97 True relocation, inconsistency = 2150537 92598650 92600397 1145740 1143996 NC_060927.1 JAAKGM020000033.1 98.07 True relocation, inconsistency = -146069 92742162 92744718 1148297 1145741 NC_060927.1 JAAKGM020000033.1 97.69 True local misassembly 92735836 92741907 1154991 1148920 NC_060927.1 JAAKGM020000033.1 98.47 True indel: indel (> 5bp) 92734723 92735609 1156112 1155226 NC_060927.1 JAAKGM020000033.1 97.52 True relocation, inconsistency = -1920050 94650783 94654770 1160129 1156115 NC_060927.1 JAAKGM020000033.1 95.32 True relocation, inconsistency = -143549 94790898 94794148 1163551 1160313 NC_060927.1 JAAKGM020000033.1 97.22 True relocation, inconsistency = 2048938 92734723 92741959 1170796 1163552 NC_060927.1 JAAKGM020000033.1 98.14 True relocation, inconsistency = -1631606 94365322 94366148 1171803 1170977 NC_060927.1 JAAKGM020000033.1 96.39 True translocation 1403783 1407474 1175536 1171804 NC_060945.1 JAAKGM020000033.1 95.75 True translocation 92786108 92791390 1180824 1175537 NC_060927.1 JAAKGM020000033.1 96.79 True translocation 1016668 1017447 1181598 1180825 NC_060937.1 JAAKGM020000033.1 95.95 True translocation 95094849 95098059 1184969 1181754 NC_060927.1 JAAKGM020000033.1 97.45 True relocation, inconsistency = 376459 94714615 94717380 1188744 1185979 NC_060927.1 JAAKGM020000033.1 99.42 True relocation, inconsistency = -140774 94851500 94854705 1192637 1189428 NC_060927.1 JAAKGM020000033.1 98.16 True relocation, inconsistency = -412406 95261598 95262334 1194945 1194209 NC_060927.1 JAAKGM020000033.1 96.2 True indel: indel (<= 5bp) 95260022 95261518 1196517 1195021 NC_060927.1 JAAKGM020000033.1 97.86 True indel: indel (<= 5bp) 95259430 95260021 1197114 1196523 NC_060927.1 JAAKGM020000033.1 97.47 True local misassembly 95258081 95259182 1198216 1197115 NC_060927.1 JAAKGM020000033.1 99.27 True indel: indel (<= 5bp) 95257284 95257900 1199017 1198401 NC_060927.1 JAAKGM020000033.1 96.92 True relocation, inconsistency = 537531 94715229 94718553 1203551 1200217 NC_060927.1 JAAKGM020000033.1 97.99 True relocation, inconsistency = -13662 94724384 94728723 1208069 1203719 NC_060927.1 JAAKGM020000033.1 97.38 True relocation, inconsistency = -135011 94855532 94858152 1211932 1209312 NC_060927.1 JAAKGM020000033.1 98.02 True local misassembly 94853930 94855257 1213624 1212297 NC_060927.1 JAAKGM020000033.1 97.1 True relocation, inconsistency = -280852 95131596 95134781 1216805 1213625 NC_060927.1 JAAKGM020000033.1 98.18 True relocation, inconsistency = 2303088 92824336 92825755 1220977 1219558 NC_060927.1 JAAKGM020000033.1 98.94 True local misassembly 92822812 92824335 1222874 1221351 NC_060927.1 JAAKGM020000033.1 97.9 True indel: indel (<= 5bp) 92821313 92822436 1224376 1223253 NC_060927.1 JAAKGM020000033.1 96.17 True indel: indel (<= 5bp) 92820779 92821307 1224905 1224377 NC_060927.1 JAAKGM020000033.1 99.77 True relocation, inconsistency = -2059217 94870980 94879995 1233919 1224906 NC_060927.1 JAAKGM020000033.1 96.59 True relocation, inconsistency = 2068370 92801455 92802609 1235074 1233920 NC_060927.1 JAAKGM020000033.1 98.93 True indel: indel (<= 5bp) 92800630 92801451 1235896 1235075 NC_060927.1 JAAKGM020000033.1 98.78 True indel: indel (<= 5bp) 92799983 92800629 1236544 1235898 NC_060927.1 JAAKGM020000033.1 97.2 True relocation, inconsistency = -2066128 94861122 94866110 1241535 1236545 NC_060927.1 JAAKGM020000033.1 96.98 True relocation, inconsistency = 2056402 92797571 92804719 1248696 1241536 NC_060927.1 JAAKGM020000033.1 97.85 True translocation 1377362 1378112 1249447 1248697 NC_060939.1 JAAKGM020000033.1 95.87 True indel: stretch of mismatches 1375232 1376983 1251577 1249826 NC_060939.1 JAAKGM020000033.1 98.06 True indel: indel (<= 5bp) 1373816 1375226 1252988 1251578 NC_060939.1 JAAKGM020000033.1 97.52 True local misassembly 1372420 1373815 1254757 1253362 NC_060939.1 JAAKGM020000033.1 97.71 True translocation 94769662 94773143 1258562 1255081 NC_060927.1 JAAKGM020000033.1 97.76 True local misassembly 94767660 94769288 1260191 1258563 NC_060927.1 JAAKGM020000033.1 98.22 True local misassembly 94763301 94766853 1264555 1261003 NC_060927.1 JAAKGM020000033.1 98.14 True translocation 4782948 4785411 1267408 1264949 NC_060937.1 JAAKGM020000033.1 97.4 True relocation, inconsistency = 4219126 560380 562844 1270841 1268386 NC_060937.1 JAAKGM020000033.1 95.59 True translocation 95211807 95213862 1275554 1273494 NC_060927.1 JAAKGM020000033.1 96.12 True translocation 774617 777214 1278286 1275690 NC_060937.1 JAAKGM020000033.1 96.62 True relocation, inconsistency = -373040 1146648 1147656 1279290 1278287 NC_060937.1 JAAKGM020000033.1 96.66 True relocation, inconsistency = -1169244 2311158 2314806 1284028 1280376 NC_060937.1 JAAKGM020000033.1 96.26 True relocation, inconsistency = 1133399 3449442 3452779 1285265 1288608 NC_060937.1 JAAKGM020000033.1 96.69 True relocation, inconsistency = 1455410 4908890 4909907 1289625 1288609 NC_060937.1 JAAKGM020000033.1 97.79 True translocation 94968830 94971686 1292435 1289626 NC_060927.1 JAAKGM020000033.1 95.34 True translocation 4868573 4869395 1293656 1292834 NC_060937.1 JAAKGM020000033.1 95.99 True local misassembly 4866693 4867441 1295525 1294777 NC_060937.1 JAAKGM020000033.1 97.06 True indel: indel (<= 5bp) 4865888 4866687 1296325 1295526 NC_060937.1 JAAKGM020000033.1 97.88 True indel: indel (<= 5bp) 4865189 4865726 1297027 1296490 NC_060937.1 JAAKGM020000033.1 95.91 True indel: indel (<= 5bp) 4864282 4865188 1297939 1297033 NC_060937.1 JAAKGM020000033.1 98.13 True indel: indel (> 5bp) 4862972 4864197 1299165 1297940 NC_060937.1 JAAKGM020000033.1 96.17 True local misassembly 4864816 4865409 1299910 1299317 NC_060937.1 JAAKGM020000033.1 96.97 True indel: indel (<= 5bp) 4864282 4864815 1300449 1299916 NC_060937.1 JAAKGM020000033.1 96.82 True indel: indel (> 5bp) 4862679 4864197 1301968 1300450 NC_060937.1 JAAKGM020000033.1 96.45 True indel: indel (<= 5bp) 4861422 4862678 1303226 1301970 NC_060937.1 JAAKGM020000033.1 96.24 True translocation 94968866 94972188 1306540 1303227 NC_060927.1 JAAKGM020000033.1 96.75 True translocation 3117179 3119324 1308681 1306541 NC_060946.1 JAAKGM020000033.1 95.95 True translocation 94830572 94832659 1311677 1309598 NC_060927.1 JAAKGM020000033.1 97.22 True translocation 163077 163988 1312594 1311678 NC_060937.1 JAAKGM020000033.1 95.73 True translocation 1326985 1327722 1315115 1314378 NC_060939.1 JAAKGM020000033.1 96.74 True translocation 3059449 3062727 1318391 1315116 NC_060946.1 JAAKGM020000033.1 96.71 True translocation 3090883 3101219 1329955 1319407 NC_060937.1 JAAKGM020000033.1 95.77 True relocation, inconsistency = -10352 3100372 3101234 1330818 1329956 NC_060937.1 JAAKGM020000033.1 97.48 True local misassembly 3095735 3106826 1341915 1330819 NC_060937.1 JAAKGM020000033.1 97.45 True relocation, inconsistency = 1467037 1627988 1628697 1342625 1341916 NC_060937.1 JAAKGM020000033.1 97.43 True translocation 94813718 94818949 1348861 1343630 NC_060927.1 JAAKGM020000033.1 97.44 True relocation, inconsistency = -38582 94851500 94852299 1349666 1348862 NC_060927.1 JAAKGM020000033.1 97.53 True translocation 1474751 1480230 1356319 1350845 NC_060939.1 JAAKGM020000033.1 97.14 True translocation 2978948 2983276 1360687 1356320 NC_060946.1 JAAKGM020000033.1 95.1 True translocation 4773334 4774176 1362084 1361246 NC_060937.1 JAAKGM020000033.1 95.73 True translocation 94860076 94864066 1367047 1363052 NC_060927.1 JAAKGM020000033.1 97.95 True relocation, inconsistency = 38811 94813352 94820988 1374974 1367324 NC_060927.1 JAAKGM020000033.1 96.58 True relocation, inconsistency = -47423 94859643 94860324 1376106 1375425 NC_060927.1 JAAKGM020000033.1 98.53 True indel: indel (<= 5bp) 94859096 94859641 1376652 1376107 NC_060927.1 JAAKGM020000033.1 99.63 True indel: indel (<= 5bp) 94858196 94859095 1377553 1376654 NC_060927.1 JAAKGM020000033.1 99.56 True local misassembly 94855910 94857822 1379466 1377554 NC_060927.1 JAAKGM020000033.1 98.85 True indel: indel (<= 5bp) 94855283 94855904 1380088 1379467 NC_060927.1 JAAKGM020000033.1 97.11 True relocation, inconsistency = 2052113 92801721 92802678 1381537 1380580 NC_060927.1 JAAKGM020000033.1 98.23 True CONTIG JAAKGM020000033.1 1381537 misassembled 58361063 58396432 36041 1 NC_060930.1 JAAKGM020000034.1 96.75 True CONTIG JAAKGM020000034.1 36041 correct 49456085 49462738 256 6913 NC_060929.1 JAAKGM020000035.1 98.11 True local misassembly 49460025 49462146 6914 9039 NC_060929.1 JAAKGM020000035.1 98.27 True local misassembly 49456375 49460161 9040 12826 NC_060929.1 JAAKGM020000035.1 98.1 True local misassembly 49456085 49462738 12827 19484 NC_060929.1 JAAKGM020000035.1 98.12 True local misassembly 49457307 49462107 19485 24289 NC_060929.1 JAAKGM020000035.1 98.24 True local misassembly 49456085 49462456 24718 31093 NC_060929.1 JAAKGM020000035.1 98.17 True local misassembly 49456006 49458051 31094 33139 NC_060929.1 JAAKGM020000035.1 98.1 True local misassembly 49454315 49462738 33140 41567 NC_060929.1 JAAKGM020000035.1 98.03 True local misassembly 49457307 49461518 41568 45781 NC_060929.1 JAAKGM020000035.1 98.05 True local misassembly 49456085 49462738 45782 52439 NC_060929.1 JAAKGM020000035.1 98.06 True local misassembly 49457307 49461518 52440 56653 NC_060929.1 JAAKGM020000035.1 97.91 True local misassembly 49456085 49462738 56654 63311 NC_060929.1 JAAKGM020000035.1 97.9 True local misassembly 49457307 49461398 63312 67405 NC_060929.1 JAAKGM020000035.1 97.97 True CONTIG JAAKGM020000035.1 67405 correct 91234758 91236184 1858 432 NC_060926.1 JAAKGM020000036.1 98.39 True indel: indel (<= 5bp) 91233446 91234756 3169 1859 NC_060926.1 JAAKGM020000036.1 98.25 True local misassembly 91225481 91226665 4354 3170 NC_060926.1 JAAKGM020000036.1 98.82 True indel: indel (> 5bp) 91224231 91225480 5653 4404 NC_060926.1 JAAKGM020000036.1 98.56 True local misassembly 91223057 91223559 6817 6315 NC_060926.1 JAAKGM020000036.1 98.01 True indel: indel (> 5bp) 91221630 91223056 8267 6841 NC_060926.1 JAAKGM020000036.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 9578 8268 NC_060926.1 JAAKGM020000036.1 98.32 True local misassembly 91225481 91226665 10763 9579 NC_060926.1 JAAKGM020000036.1 98.9 True indel: indel (> 5bp) 91224231 91225480 12062 10813 NC_060926.1 JAAKGM020000036.1 98.48 True local misassembly 91223057 91223559 13226 12724 NC_060926.1 JAAKGM020000036.1 98.01 True indel: indel (> 5bp) 91221630 91223056 14676 13250 NC_060926.1 JAAKGM020000036.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 15987 14677 NC_060926.1 JAAKGM020000036.1 98.32 True local misassembly 91225481 91226665 17172 15988 NC_060926.1 JAAKGM020000036.1 98.9 True indel: indel (> 5bp) 91224231 91225480 18471 17222 NC_060926.1 JAAKGM020000036.1 98.48 True local misassembly 91223057 91223559 19635 19133 NC_060926.1 JAAKGM020000036.1 98.01 True indel: indel (> 5bp) 91221630 91223056 21085 19659 NC_060926.1 JAAKGM020000036.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 22396 21086 NC_060926.1 JAAKGM020000036.1 98.25 True local misassembly 91212330 91213510 23581 22401 NC_060926.1 JAAKGM020000036.1 98.98 True indel: indel (> 5bp) 91211080 91212329 24880 23631 NC_060926.1 JAAKGM020000036.1 98.24 True local misassembly 91209906 91210408 26044 25542 NC_060926.1 JAAKGM020000036.1 98.21 True indel: indel (> 5bp) 91208479 91209905 27494 26068 NC_060926.1 JAAKGM020000036.1 98.46 True indel: indel (<= 5bp) 91207167 91208477 28805 27495 NC_060926.1 JAAKGM020000036.1 98.25 True local misassembly 91205709 91206901 29998 28806 NC_060926.1 JAAKGM020000036.1 98.91 True indel: indel (> 5bp) 91204826 91205708 30930 30048 NC_060926.1 JAAKGM020000036.1 98.75 True indel: indel (> 5bp) 91204198 91204825 31584 30957 NC_060926.1 JAAKGM020000036.1 98.73 True CONTIG JAAKGM020000036.1 31974 correct 49457307 49461150 4123 223 NC_060929.1 JAAKGM020000037.1 96.84 True local misassembly 49456085 49462738 10781 4124 NC_060929.1 JAAKGM020000037.1 97.91 True local misassembly 49456085 49461518 16217 10782 NC_060929.1 JAAKGM020000037.1 97.97 True relocation, inconsistency = 14606 49431919 49441356 25780 16340 NC_060929.1 JAAKGM020000037.1 98.33 True local misassembly 49435749 49436674 26706 25781 NC_060929.1 JAAKGM020000037.1 98.38 True local misassembly 49431919 49439304 35295 27909 NC_060929.1 JAAKGM020000037.1 98.48 True local misassembly 49435749 49436674 36221 35296 NC_060929.1 JAAKGM020000037.1 98.38 True relocation, inconsistency = -11552 49441606 49446098 41916 37424 NC_060929.1 JAAKGM020000037.1 98.62 True local misassembly 49435749 49438889 45057 41917 NC_060929.1 JAAKGM020000037.1 97.97 True relocation, inconsistency = -12911 49445185 49447506 48532 46211 NC_060929.1 JAAKGM020000037.1 98.45 True indel: stretch of mismatches 49443091 49445128 50626 48589 NC_060929.1 JAAKGM020000037.1 98.14 True indel: indel (<= 5bp) 49442535 49443090 51183 50628 NC_060929.1 JAAKGM020000037.1 95.5 True relocation, inconsistency = -21057 49456085 49463425 58688 51350 NC_060929.1 JAAKGM020000037.1 97.7 True local misassembly 49457293 49461518 62914 58689 NC_060929.1 JAAKGM020000037.1 97.62 True local misassembly 49457307 49462724 68336 62915 NC_060929.1 JAAKGM020000037.1 97.8 True local misassembly 49456085 49462738 74994 68337 NC_060929.1 JAAKGM020000037.1 97.72 True local misassembly 49457307 49461518 79208 74995 NC_060929.1 JAAKGM020000037.1 97.98 True local misassembly 49456085 49462738 85866 79209 NC_060929.1 JAAKGM020000037.1 97.6 True local misassembly 49457307 49461518 90079 85867 NC_060929.1 JAAKGM020000037.1 98.01 True local misassembly 49456085 49462738 96737 90080 NC_060929.1 JAAKGM020000037.1 97.75 True local misassembly 49457307 49461518 100951 96738 NC_060929.1 JAAKGM020000037.1 97.78 True local misassembly 49456085 49462738 107609 100952 NC_060929.1 JAAKGM020000037.1 97.75 True local misassembly 49458666 49460161 109104 107610 NC_060929.1 JAAKGM020000037.1 98.0 True local misassembly 49456085 49462738 115762 109105 NC_060929.1 JAAKGM020000037.1 97.97 True local misassembly 49457307 49461518 119976 115763 NC_060929.1 JAAKGM020000037.1 97.94 True local misassembly 49457322 49462738 125397 119977 NC_060929.1 JAAKGM020000037.1 98.08 True local misassembly 49447389 49454263 132277 125398 NC_060929.1 JAAKGM020000037.1 97.88 True local misassembly 49447847 49449884 134877 132840 NC_060929.1 JAAKGM020000037.1 98.38 True indel: indel (<= 5bp) 49447291 49447846 135434 134879 NC_060929.1 JAAKGM020000037.1 97.12 True relocation, inconsistency = -14264 49454315 49461543 142676 135446 NC_060929.1 JAAKGM020000037.1 98.31 True relocation, inconsistency = 91034 49361237 49363280 144720 142677 NC_060929.1 JAAKGM020000037.1 98.28 True local misassembly 49362596 49365697 148797 145696 NC_060929.1 JAAKGM020000037.1 98.07 True local misassembly 49361281 49363614 151131 148798 NC_060929.1 JAAKGM020000037.1 98.22 True relocation, inconsistency = -85262 49436651 49446542 160686 151132 NC_060929.1 JAAKGM020000037.1 95.02 True relocation, inconsistency = -12909 49447329 49449559 162918 160687 NC_060929.1 JAAKGM020000037.1 98.11 True relocation, inconsistency = -16301 49456498 49463425 170050 163123 NC_060929.1 JAAKGM020000037.1 97.85 True local misassembly 49456085 49460186 174197 170100 NC_060929.1 JAAKGM020000037.1 98.03 True local misassembly 49447847 49449884 176663 174626 NC_060929.1 JAAKGM020000037.1 97.89 True indel: indel (<= 5bp) 49447291 49447846 177220 176665 NC_060929.1 JAAKGM020000037.1 95.68 True relocation, inconsistency = -14264 49456052 49461543 182722 177232 NC_060929.1 JAAKGM020000037.1 97.97 True local misassembly 49448201 49459788 193975 182723 NC_060929.1 JAAKGM020000037.1 95.25 True local misassembly 49447329 49450918 197566 193976 NC_060929.1 JAAKGM020000037.1 98.11 True local misassembly 49445185 49446776 200047 198456 NC_060929.1 JAAKGM020000037.1 98.49 True indel: stretch of mismatches 49443091 49445128 202141 200104 NC_060929.1 JAAKGM020000037.1 98.38 True indel: indel (<= 5bp) 49442535 49443090 202698 202143 NC_060929.1 JAAKGM020000037.1 97.12 True relocation, inconsistency = -21057 49456085 49463425 210203 202865 NC_060929.1 JAAKGM020000037.1 97.81 True local misassembly 49456676 49460161 213689 210204 NC_060929.1 JAAKGM020000037.1 97.63 True local misassembly 49457135 49462447 219004 213690 NC_060929.1 JAAKGM020000037.1 97.86 True local misassembly 49456085 49462566 225488 219005 NC_060929.1 JAAKGM020000037.1 97.8 True local misassembly 49456676 49457443 226256 225489 NC_060929.1 JAAKGM020000037.1 97.65 True local misassembly 49457307 49462447 231399 226257 NC_060929.1 JAAKGM020000037.1 97.85 True local misassembly 49456085 49462738 238057 231400 NC_060929.1 JAAKGM020000037.1 97.82 True local misassembly 49456676 49458802 240184 238058 NC_060929.1 JAAKGM020000037.1 97.76 True local misassembly 49456085 49462447 246551 240185 NC_060929.1 JAAKGM020000037.1 98.07 True local misassembly 49456676 49457443 247319 246552 NC_060929.1 JAAKGM020000037.1 97.88 True local misassembly 49457298 49462447 252472 247320 NC_060929.1 JAAKGM020000037.1 97.88 True local misassembly 49456085 49462727 259119 252473 NC_060929.1 JAAKGM020000037.1 97.91 True local misassembly 49458657 49461518 261983 259120 NC_060929.1 JAAKGM020000037.1 97.76 True local misassembly 49456085 49462727 268629 261984 NC_060929.1 JAAKGM020000037.1 97.86 True local misassembly 49456378 49458802 271054 268630 NC_060929.1 JAAKGM020000037.1 97.72 True CONTIG JAAKGM020000037.1 271054 misassembled 49321701 49324667 5111 2144 NC_060929.1 JAAKGM020000038.1 97.74 True relocation, inconsistency = 2165924 47151827 47155686 9057 5202 NC_060929.1 JAAKGM020000038.1 97.49 True relocation, inconsistency = -2309615 49460184 49461441 10315 9058 NC_060929.1 JAAKGM020000038.1 98.23 True indel: indel (<= 5bp) 49458726 49460183 11775 10318 NC_060929.1 JAAKGM020000038.1 98.56 True relocation, inconsistency = 133160 49321701 49325522 15642 11819 NC_060929.1 JAAKGM020000038.1 97.72 True local misassembly 49321701 49324667 18700 15733 NC_060929.1 JAAKGM020000038.1 97.74 True relocation, inconsistency = 2165924 47153141 47155686 21332 18791 NC_060929.1 JAAKGM020000038.1 97.49 True relocation, inconsistency = -2297050 49442573 49450190 28948 21333 NC_060929.1 JAAKGM020000038.1 97.91 True CONTIG JAAKGM020000038.1 29868 misassembled 49460025 49461269 1247 1 NC_060929.1 JAAKGM020000039.1 98.02 True local misassembly 49456085 49462738 7905 1248 NC_060929.1 JAAKGM020000039.1 97.97 True local misassembly 49457307 49462107 13138 8334 NC_060929.1 JAAKGM020000039.1 97.96 True local misassembly 49456085 49462738 19796 13139 NC_060929.1 JAAKGM020000039.1 97.96 True local misassembly 49457307 49460161 22651 19797 NC_060929.1 JAAKGM020000039.1 97.87 True local misassembly 49456085 49462738 29309 22652 NC_060929.1 JAAKGM020000039.1 97.78 True local misassembly 49457307 49461518 33523 29310 NC_060929.1 JAAKGM020000039.1 97.81 True local misassembly 49456085 49462738 40181 33524 NC_060929.1 JAAKGM020000039.1 97.81 True local misassembly 49457307 49461518 44395 40182 NC_060929.1 JAAKGM020000039.1 97.9 True local misassembly 49456087 49462738 51051 44396 NC_060929.1 JAAKGM020000039.1 97.91 True local misassembly 49457307 49461516 55263 51052 NC_060929.1 JAAKGM020000039.1 97.81 True local misassembly 49456087 49462738 61915 55264 NC_060929.1 JAAKGM020000039.1 97.91 True local misassembly 49457307 49460159 64764 61916 NC_060929.1 JAAKGM020000039.1 97.84 True local misassembly 49456085 49462738 71422 64765 NC_060929.1 JAAKGM020000039.1 97.87 True local misassembly 49456085 49462107 77877 71851 NC_060929.1 JAAKGM020000039.1 98.08 True local misassembly 49458431 49460161 79608 77878 NC_060929.1 JAAKGM020000039.1 98.06 True local misassembly 49456855 49462444 85601 80008 NC_060929.1 JAAKGM020000039.1 97.73 True relocation, inconsistency = 7131 49448346 49449532 86979 85793 NC_060929.1 JAAKGM020000039.1 98.82 True relocation, inconsistency = 10191 49437032 49437982 88102 87152 NC_060929.1 JAAKGM020000039.1 98.74 True indel: stretch of mismatches 49436248 49436975 88886 88159 NC_060929.1 JAAKGM020000039.1 96.84 True relocation, inconsistency = -24455 49457307 49460701 92284 88888 NC_060929.1 JAAKGM020000039.1 97.88 True local misassembly 49456085 49462738 98938 92285 NC_060929.1 JAAKGM020000039.1 97.67 True relocation, inconsistency = -8150 49460025 49462738 103148 100435 NC_060929.1 JAAKGM020000039.1 97.78 True local misassembly 49456085 49462738 109802 103149 NC_060929.1 JAAKGM020000039.1 97.88 True local misassembly 49456085 49462107 116257 110231 NC_060929.1 JAAKGM020000039.1 98.09 True local misassembly 49458431 49460161 117988 116258 NC_060929.1 JAAKGM020000039.1 98.12 True local misassembly 49456855 49462456 123981 118376 NC_060929.1 JAAKGM020000039.1 97.86 True local misassembly 49449724 49450854 125340 124210 NC_060929.1 JAAKGM020000039.1 98.5 True indel: stretch of mismatches 49447798 49449532 127267 125532 NC_060929.1 JAAKGM020000039.1 97.89 True relocation, inconsistency = -12904 49457303 49460701 130664 127268 NC_060929.1 JAAKGM020000039.1 97.77 True local misassembly 49458666 49462734 134737 130665 NC_060929.1 JAAKGM020000039.1 97.9 True local misassembly 49456085 49462738 141395 134738 NC_060929.1 JAAKGM020000039.1 97.99 True local misassembly 49456089 49461518 146827 141396 NC_060929.1 JAAKGM020000039.1 97.97 True relocation, inconsistency = 2107787 47347569 47348241 147560 146888 NC_060929.1 JAAKGM020000039.1 98.37 True relocation, inconsistency = -2071102 49413918 49417224 152316 149007 NC_060929.1 JAAKGM020000039.1 97.55 True relocation, inconsistency = 2130584 47281118 47281867 154532 153783 NC_060929.1 JAAKGM020000039.1 98.4 True relocation, inconsistency = -2173720 49451347 49454694 158027 154676 NC_060929.1 JAAKGM020000039.1 97.61 True indel: stretch of mismatches 49449310 49450903 160064 158471 NC_060929.1 JAAKGM020000039.1 97.68 True relocation, inconsistency = 31937 49413087 49415224 164351 162213 NC_060929.1 JAAKGM020000039.1 97.57 True relocation, inconsistency = 88323 49323021 49324147 166094 164968 NC_060929.1 JAAKGM020000039.1 98.23 True relocation, inconsistency = -120931 49442450 49443775 167597 166271 NC_060929.1 JAAKGM020000039.1 97.36 True relocation, inconsistency = 2338826 47100523 47101599 170698 169622 NC_060929.1 JAAKGM020000039.1 98.14 True relocation, inconsistency = -2403721 49497894 49502598 177050 172344 NC_060929.1 JAAKGM020000039.1 97.83 True relocation, inconsistency = 62852 49433005 49434598 179087 177494 NC_060929.1 JAAKGM020000039.1 97.62 True relocation, inconsistency = 140985 49287946 49289234 183161 181873 NC_060929.1 JAAKGM020000039.1 97.91 True relocation, inconsistency = -292528 49577010 49577989 186625 185646 NC_060929.1 JAAKGM020000039.1 98.27 True translocation 29652468 29654071 200783 199179 NC_060943.1 JAAKGM020000039.1 95.08 True translocation 49416973 49418007 201914 200879 NC_060929.1 JAAKGM020000039.1 97.49 True relocation, inconsistency = 155591 49260820 49261381 202474 201915 NC_060929.1 JAAKGM020000039.1 97.33 True relocation, inconsistency = -187863 49445847 49448605 205311 202552 NC_060929.1 JAAKGM020000039.1 97.72 True relocation, inconsistency = 108022 49335446 49336086 207690 207050 NC_060929.1 JAAKGM020000039.1 98.13 True relocation, inconsistency = -123302 49455357 49456114 211082 210324 NC_060929.1 JAAKGM020000039.1 98.02 True translocation 124822335 124823462 212817 213943 NC_060925.1 JAAKGM020000039.1 96.28 True translocation 49340661 49342092 220474 219043 NC_060929.1 JAAKGM020000039.1 98.18 True local misassembly 49340863 49342341 222651 221173 NC_060929.1 JAAKGM020000039.1 99.05 True local misassembly 49338825 49340303 224690 223212 NC_060929.1 JAAKGM020000039.1 98.92 True relocation, inconsistency = -51635 49388144 49389122 227006 226028 NC_060929.1 JAAKGM020000039.1 98.26 True fake: not a misassembly (possible transposable element) 49575967 49577450 230134 228650 NC_060929.1 JAAKGM020000039.1 98.45 True fake: not a misassembly (possible transposable element) 49388144 49389122 231765 230787 NC_060929.1 JAAKGM020000039.1 98.47 True relocation, inconsistency = 36005 49348193 49350495 235712 233409 NC_060929.1 JAAKGM020000039.1 98.74 True relocation, inconsistency = 28537 49316743 49319096 238626 236272 NC_060929.1 JAAKGM020000039.1 98.22 True local misassembly 49314783 49315842 240585 239526 NC_060929.1 JAAKGM020000039.1 99.25 True fake: not a misassembly (possible transposable element) 49337206 49338224 241604 240586 NC_060929.1 JAAKGM020000039.1 98.58 True fake: not a misassembly (possible transposable element) 49312806 49313763 242562 241605 NC_060929.1 JAAKGM020000039.1 98.0 True relocation, inconsistency = -29897 49338825 49340303 246440 244962 NC_060929.1 JAAKGM020000039.1 99.05 True local misassembly 49336471 49338265 248794 247001 NC_060929.1 JAAKGM020000039.1 96.67 True relocation, inconsistency = -68957 49403138 49405427 251084 248795 NC_060929.1 JAAKGM020000039.1 98.52 True relocation, inconsistency = 11547 49389775 49391222 252902 251453 NC_060929.1 JAAKGM020000039.1 98.83 True relocation, inconsistency = -20042 49406876 49409261 255844 253458 NC_060929.1 JAAKGM020000039.1 98.03 True relocation, inconsistency = 92738 49312745 49313804 257238 256178 NC_060929.1 JAAKGM020000039.1 98.87 True translocation 124161632 124162270 260420 261057 NC_060925.1 JAAKGM020000039.1 97.18 True translocation 49362820 49363403 262878 262295 NC_060929.1 JAAKGM020000039.1 98.12 True relocation, inconsistency = 8493 49351589 49353891 265616 263314 NC_060929.1 JAAKGM020000039.1 98.83 True relocation, inconsistency = -58088 49407424 49409261 267869 266032 NC_060929.1 JAAKGM020000039.1 98.64 True local misassembly 49403138 49409121 273851 267870 NC_060929.1 JAAKGM020000039.1 98.7 True relocation, inconsistency = 84587 49317382 49318221 275020 274181 NC_060929.1 JAAKGM020000039.1 98.69 True local misassembly 49314364 49315842 278038 276560 NC_060929.1 JAAKGM020000039.1 99.19 True local misassembly 49310495 49313804 281902 278599 NC_060929.1 JAAKGM020000039.1 98.37 True relocation, inconsistency = -253791 49557055 49557996 289133 288192 NC_060929.1 JAAKGM020000039.1 98.62 True relocation, inconsistency = 141345 49413038 49415376 291807 289467 NC_060929.1 JAAKGM020000039.1 97.74 True fake: not a misassembly (possible transposable element) 49457388 49458174 292972 292186 NC_060929.1 JAAKGM020000039.1 97.94 True fake: not a misassembly (possible transposable element) 49404010 49407794 296757 292973 NC_060929.1 JAAKGM020000039.1 98.34 True relocation, inconsistency = -36009 49437155 49439911 299621 296865 NC_060929.1 JAAKGM020000039.1 98.27 True relocation, inconsistency = -24792 49457307 49461946 304265 299622 NC_060929.1 JAAKGM020000039.1 98.14 True local misassembly 49456085 49462738 310923 304266 NC_060929.1 JAAKGM020000039.1 97.88 True local misassembly 49458666 49461518 313777 310924 NC_060929.1 JAAKGM020000039.1 97.94 True local misassembly 49456085 49462738 320435 313778 NC_060929.1 JAAKGM020000039.1 97.91 True CONTIG JAAKGM020000039.1 320928 misassembled 49456310 49457015 1 706 NC_060929.1 JAAKGM020000040.1 97.59 True indel: stretch of mismatches 49457072 49458374 763 2065 NC_060929.1 JAAKGM020000040.1 97.85 True indel: stretch of mismatches 49458431 49458941 2122 2632 NC_060929.1 JAAKGM020000040.1 97.65 True local misassembly 49456563 49461518 2633 7590 NC_060929.1 JAAKGM020000040.1 97.72 True local misassembly 49456085 49461518 7591 13025 NC_060929.1 JAAKGM020000040.1 97.76 True local misassembly 49456085 49462738 13026 19683 NC_060929.1 JAAKGM020000040.1 97.87 True local misassembly 49458666 49462447 19684 23469 NC_060929.1 JAAKGM020000040.1 97.88 True local misassembly 49457072 49458191 23866 24985 NC_060929.1 JAAKGM020000040.1 97.93 True local misassembly 49456493 49461518 24986 30013 NC_060929.1 JAAKGM020000040.1 97.36 True local misassembly 49456085 49462738 30014 36671 NC_060929.1 JAAKGM020000040.1 97.87 True local misassembly 49457307 49458802 36672 38167 NC_060929.1 JAAKGM020000040.1 97.97 True local misassembly 49456085 49462738 38168 44825 NC_060929.1 JAAKGM020000040.1 98.03 True local misassembly 49457307 49460701 44826 48222 NC_060929.1 JAAKGM020000040.1 98.16 True relocation, inconsistency = -23775 49437032 49438334 48328 49630 NC_060929.1 JAAKGM020000040.1 98.47 True indel: stretch of mismatches 49438391 49440088 49687 51384 NC_060929.1 JAAKGM020000040.1 98.35 True local misassembly 49437037 49438390 51731 53085 NC_060929.1 JAAKGM020000040.1 98.38 True relocation, inconsistency = 18002 49456441 49461518 53134 58213 NC_060929.1 JAAKGM020000040.1 97.78 True local misassembly 49456085 49462738 58214 64871 NC_060929.1 JAAKGM020000040.1 97.93 True local misassembly 49458666 49461518 64872 67726 NC_060929.1 JAAKGM020000040.1 97.88 True local misassembly 49456085 49462738 67727 74379 NC_060929.1 JAAKGM020000040.1 97.72 True local misassembly 49460025 49461543 74380 75900 NC_060929.1 JAAKGM020000040.1 97.75 True local misassembly 49456469 49461543 75921 80997 NC_060929.1 JAAKGM020000040.1 97.7 True relocation, inconsistency = -16982 49447522 49453617 83958 90056 NC_060929.1 JAAKGM020000040.1 97.49 True relocation, inconsistency = -18681 49435389 49436095 90509 91215 NC_060929.1 JAAKGM020000040.1 98.3 True local misassembly 49431919 49436587 91794 96463 NC_060929.1 JAAKGM020000040.1 98.33 True local misassembly 49433872 49434471 96464 97063 NC_060929.1 JAAKGM020000040.1 98.56 True local misassembly 49434812 49435388 97064 97640 NC_060929.1 JAAKGM020000040.1 99.13 True indel: indel (<= 5bp) 49435389 49436095 97643 98349 NC_060929.1 JAAKGM020000040.1 98.73 True indel: stretch of mismatches 49436318 49441356 98572 103612 NC_060929.1 JAAKGM020000040.1 98.06 True relocation, inconsistency = 14606 49456085 49462842 103735 110496 NC_060929.1 JAAKGM020000040.1 97.97 True local misassembly 49457411 49462146 110497 115236 NC_060929.1 JAAKGM020000040.1 98.13 True local misassembly 49456375 49462165 115237 121031 NC_060929.1 JAAKGM020000040.1 98.09 True local misassembly 49456394 49461518 121032 126158 NC_060929.1 JAAKGM020000040.1 97.94 True local misassembly 49456085 49462738 126159 132816 NC_060929.1 JAAKGM020000040.1 97.87 True local misassembly 49457307 49461518 132817 137030 NC_060929.1 JAAKGM020000040.1 97.91 True local misassembly 49456085 49462738 137031 143688 NC_060929.1 JAAKGM020000040.1 97.81 True local misassembly 49457307 49461518 143689 147902 NC_060929.1 JAAKGM020000040.1 97.91 True local misassembly 49456085 49462738 147903 154560 NC_060929.1 JAAKGM020000040.1 97.9 True local misassembly 49457307 49461518 154561 158774 NC_060929.1 JAAKGM020000040.1 97.8 True local misassembly 49456085 49461946 158775 164638 NC_060929.1 JAAKGM020000040.1 97.8 True CONTIG JAAKGM020000040.1 164639 misassembled 49394362 49394984 1 623 NC_060929.1 JAAKGM020000041.1 98.56 True local misassembly 49394985 49396028 964 2007 NC_060929.1 JAAKGM020000041.1 98.95 True indel: indel (<= 5bp) 49396029 49396694 2009 2674 NC_060929.1 JAAKGM020000041.1 98.65 True local misassembly 49397930 49399350 3570 4990 NC_060929.1 JAAKGM020000041.1 98.24 True relocation, inconsistency = 22080 49421860 49422368 5420 5928 NC_060929.1 JAAKGM020000041.1 97.45 True indel: indel (<= 5bp) 49422369 49424149 5930 7710 NC_060929.1 JAAKGM020000041.1 99.1 True relocation, inconsistency = 22421 49446864 49454263 8004 15408 NC_060929.1 JAAKGM020000041.1 98.24 True local misassembly 49457322 49461518 15409 19607 NC_060929.1 JAAKGM020000041.1 97.91 True local misassembly 49456085 49462738 19608 26265 NC_060929.1 JAAKGM020000041.1 97.88 True local misassembly 49457307 49461518 26266 30479 NC_060929.1 JAAKGM020000041.1 97.87 True local misassembly 49456085 49462738 30480 37137 NC_060929.1 JAAKGM020000041.1 97.82 True local misassembly 49457307 49461518 37138 41351 NC_060929.1 JAAKGM020000041.1 97.81 True local misassembly 49456085 49462738 41352 48009 NC_060929.1 JAAKGM020000041.1 97.79 True local misassembly 49457307 49461518 48010 52223 NC_060929.1 JAAKGM020000041.1 97.79 True local misassembly 49456085 49462738 52224 58881 NC_060929.1 JAAKGM020000041.1 97.93 True local misassembly 49457307 49461518 58882 63095 NC_060929.1 JAAKGM020000041.1 97.84 True local misassembly 49456085 49462738 63096 69753 NC_060929.1 JAAKGM020000041.1 97.82 True local misassembly 49457307 49461518 69754 73967 NC_060929.1 JAAKGM020000041.1 97.9 True local misassembly 49456085 49462738 73968 80624 NC_060929.1 JAAKGM020000041.1 97.94 True local misassembly 49457307 49461518 80625 84837 NC_060929.1 JAAKGM020000041.1 97.88 True local misassembly 49456085 49462738 84838 91495 NC_060929.1 JAAKGM020000041.1 97.85 True local misassembly 49457307 49461518 91496 95709 NC_060929.1 JAAKGM020000041.1 97.76 True local misassembly 49456085 49462738 95710 102367 NC_060929.1 JAAKGM020000041.1 97.82 True local misassembly 49457307 49461518 102368 106581 NC_060929.1 JAAKGM020000041.1 97.84 True local misassembly 49456085 49462738 106582 113239 NC_060929.1 JAAKGM020000041.1 97.87 True local misassembly 49457307 49461518 113240 117453 NC_060929.1 JAAKGM020000041.1 97.85 True local misassembly 49456085 49462738 117454 124111 NC_060929.1 JAAKGM020000041.1 97.79 True local misassembly 49457307 49461518 124112 128324 NC_060929.1 JAAKGM020000041.1 97.78 True local misassembly 49456085 49462738 128325 134982 NC_060929.1 JAAKGM020000041.1 97.85 True local misassembly 49457307 49461518 134983 139196 NC_060929.1 JAAKGM020000041.1 97.79 True local misassembly 49456085 49462738 139197 145854 NC_060929.1 JAAKGM020000041.1 97.79 True local misassembly 49458666 49461036 145855 148227 NC_060929.1 JAAKGM020000041.1 97.8 True CONTIG JAAKGM020000041.1 148227 misassembled 41662160 41662862 969 1669 NC_060934.1 JAAKGM020000042.1 97.01 True relocation, inconsistency = -322910 41343953 41345990 5670 7705 NC_060934.1 JAAKGM020000042.1 97.86 True relocation, inconsistency = 183415 41529406 41534906 7706 13200 NC_060934.1 JAAKGM020000042.1 97.53 True local misassembly 41531512 41533913 13201 15600 NC_060934.1 JAAKGM020000042.1 97.8 True relocation, inconsistency = 109636 41644567 41648622 16618 20669 NC_060934.1 JAAKGM020000042.1 98.1 True local misassembly 41644567 41648462 21709 25600 NC_060934.1 JAAKGM020000042.1 98.31 True relocation, inconsistency = -593086 41055377 41057007 25601 27231 NC_060934.1 JAAKGM020000042.1 98.67 True local misassembly 41056553 41061083 28473 33002 NC_060934.1 JAAKGM020000042.1 98.59 True relocation, inconsistency = -39384 41021700 41023208 33003 34509 NC_060934.1 JAAKGM020000042.1 98.1 True relocation, inconsistency = 620584 41643793 41646168 34510 36882 NC_060934.1 JAAKGM020000042.1 97.93 True local misassembly 41643793 41648395 36883 41485 NC_060934.1 JAAKGM020000042.1 97.91 True local misassembly 41644567 41648614 43428 47473 NC_060934.1 JAAKGM020000042.1 97.83 True local misassembly 41644662 41648462 48276 52073 NC_060934.1 JAAKGM020000042.1 98.18 True relocation, inconsistency = -56339 41592189 41595022 52139 54968 NC_060934.1 JAAKGM020000042.1 97.42 True relocation, inconsistency = -1876385 39718638 39719419 54969 55750 NC_060934.1 JAAKGM020000042.1 98.27 True local misassembly 39719787 39720324 56456 56993 NC_060934.1 JAAKGM020000042.1 98.33 True local misassembly 39720663 39721471 56994 57802 NC_060934.1 JAAKGM020000042.1 96.79 True relocation, inconsistency = 1876722 41599422 41608577 59031 68189 NC_060934.1 JAAKGM020000042.1 97.66 True relocation, inconsistency = 32246 41640824 41644229 68190 71594 NC_060934.1 JAAKGM020000042.1 97.48 True local misassembly 41641599 41644229 72019 74649 NC_060934.1 JAAKGM020000042.1 97.34 True relocation, inconsistency = -289660 41354570 41355366 74650 75446 NC_060934.1 JAAKGM020000042.1 97.78 True relocation, inconsistency = 74833 41431344 41433476 76591 78723 NC_060934.1 JAAKGM020000042.1 96.81 True relocation, inconsistency = 92970 41526796 41532869 79073 85144 NC_060934.1 JAAKGM020000042.1 97.24 True relocation, inconsistency = -1847181 39686636 39688016 86092 87471 NC_060934.1 JAAKGM020000042.1 97.61 True relocation, inconsistency = 1955121 41644567 41647440 88901 91771 NC_060934.1 JAAKGM020000042.1 98.05 True local misassembly 41644567 41648573 94668 98668 NC_060934.1 JAAKGM020000042.1 98.33 True local misassembly 41644567 41648622 99757 103806 NC_060934.1 JAAKGM020000042.1 98.3 True relocation, inconsistency = -13920 41635971 41638816 105075 107917 NC_060934.1 JAAKGM020000042.1 97.83 True local misassembly 41644586 41647623 107918 110951 NC_060934.1 JAAKGM020000042.1 98.34 True local misassembly 41644567 41647623 110952 114004 NC_060934.1 JAAKGM020000042.1 98.37 True local misassembly 41644567 41649221 114005 118655 NC_060934.1 JAAKGM020000042.1 98.17 True local misassembly 41644808 41646639 118656 120487 NC_060934.1 JAAKGM020000042.1 97.89 True fake: not a misassembly (possible transposable element) 41039633 41043237 120488 124092 NC_060934.1 JAAKGM020000042.1 98.1 True fake: not a misassembly (possible transposable element) 41643793 41648573 124093 128867 NC_060934.1 JAAKGM020000042.1 98.08 True local misassembly 41644567 41648622 129956 134005 NC_060934.1 JAAKGM020000042.1 98.3 True local misassembly 41644567 41648622 134026 138075 NC_060934.1 JAAKGM020000042.1 98.22 True relocation, inconsistency = -13920 41635971 41639796 139344 143164 NC_060934.1 JAAKGM020000042.1 97.86 True local misassembly 41644586 41647623 144223 147256 NC_060934.1 JAAKGM020000042.1 98.34 True local misassembly 41644567 41648622 147257 151306 NC_060934.1 JAAKGM020000042.1 98.42 True relocation, inconsistency = -310366 41344037 41346668 157087 159718 NC_060934.1 JAAKGM020000042.1 97.55 True relocation, inconsistency = 297124 41643793 41648616 159719 164542 NC_060934.1 JAAKGM020000042.1 97.95 True relocation, inconsistency = -782638 40867013 40868881 165577 167445 NC_060934.1 JAAKGM020000042.1 98.56 True relocation, inconsistency = 147452 41016334 41017181 167446 168293 NC_060934.1 JAAKGM020000042.1 98.62 True local misassembly 41015144 41023624 168294 176770 NC_060934.1 JAAKGM020000042.1 98.25 True relocation, inconsistency = 621941 41645566 41648622 176771 179827 NC_060934.1 JAAKGM020000042.1 97.93 True local misassembly 41644567 41648622 179848 183899 NC_060934.1 JAAKGM020000042.1 98.15 True relocation, inconsistency = -813009 40835623 40837491 183909 185775 NC_060934.1 JAAKGM020000042.1 97.16 True relocation, inconsistency = 798410 41636044 41639796 185918 189667 NC_060934.1 JAAKGM020000042.1 97.79 True fake: not a misassembly (possible transposable element) 41662160 41662828 196087 196753 NC_060934.1 JAAKGM020000042.1 96.86 True fake: not a misassembly (possible transposable element) 41644567 41648622 198849 202898 NC_060934.1 JAAKGM020000042.1 98.4 True relocation, inconsistency = -589350 41059273 41061913 202899 205537 NC_060934.1 JAAKGM020000042.1 98.25 True relocation, inconsistency = 581879 41643793 41647612 205538 209357 NC_060934.1 JAAKGM020000042.1 97.97 True fake: not a misassembly (possible transposable element) 41344037 41346668 209358 211989 NC_060934.1 JAAKGM020000042.1 97.55 True fake: not a misassembly (possible transposable element) 41643793 41648622 211990 216819 NC_060934.1 JAAKGM020000042.1 97.99 True local misassembly 41644686 41648622 217638 221570 NC_060934.1 JAAKGM020000042.1 98.27 True local misassembly 41643793 41648622 222174 227003 NC_060934.1 JAAKGM020000042.1 97.99 True local misassembly 41645566 41647623 227004 229061 NC_060934.1 JAAKGM020000042.1 97.93 True local misassembly 41644567 41648622 229062 233115 NC_060934.1 JAAKGM020000042.1 97.86 True fake: not a misassembly (possible transposable element) 40835623 40837450 234142 235967 NC_060934.1 JAAKGM020000042.1 97.22 True fake: not a misassembly (possible transposable element) 41644686 41648622 235968 239900 NC_060934.1 JAAKGM020000042.1 98.3 True relocation, inconsistency = -635524 41015144 41015952 241946 242754 NC_060934.1 JAAKGM020000042.1 98.89 True relocation, inconsistency = 619908 41636044 41639796 242938 246687 NC_060934.1 JAAKGM020000042.1 97.82 True local misassembly 41635971 41639796 248973 252797 NC_060934.1 JAAKGM020000042.1 97.54 True local misassembly 41636033 41638545 253109 255618 NC_060934.1 JAAKGM020000042.1 97.33 True relocation, inconsistency = -580184 41058413 41061073 255670 258330 NC_060934.1 JAAKGM020000042.1 98.68 True indel: indel (<= 5bp) 41061076 41062181 258331 259436 NC_060934.1 JAAKGM020000042.1 98.64 True relocation, inconsistency = 573732 41636044 41636760 259567 260283 NC_060934.1 JAAKGM020000042.1 97.9 True relocation, inconsistency = 7806 41644567 41648622 260284 264333 NC_060934.1 JAAKGM020000042.1 98.45 True local misassembly 41644567 41648622 265373 269424 NC_060934.1 JAAKGM020000042.1 98.57 True relocation, inconsistency = -593426 41056533 41058072 270761 272300 NC_060934.1 JAAKGM020000042.1 98.18 True local misassembly 41058413 41061073 272301 274961 NC_060934.1 JAAKGM020000042.1 98.65 True indel: indel (<= 5bp) 41061076 41061913 274962 275799 NC_060934.1 JAAKGM020000042.1 98.11 True relocation, inconsistency = 281360 41343274 41348726 275800 281252 NC_060934.1 JAAKGM020000042.1 97.75 True relocation, inconsistency = 294069 41644567 41647623 283024 286076 NC_060934.1 JAAKGM020000042.1 98.38 True local misassembly 41644567 41648622 286077 290128 NC_060934.1 JAAKGM020000042.1 98.35 True local misassembly 41644586 41648297 290168 293875 NC_060934.1 JAAKGM020000042.1 98.65 True local misassembly 41643793 41648622 294464 299291 NC_060934.1 JAAKGM020000042.1 98.49 True local misassembly 41644567 41648622 299312 303361 NC_060934.1 JAAKGM020000042.1 98.27 True local misassembly 41643793 41647613 303965 307785 NC_060934.1 JAAKGM020000042.1 97.75 True local misassembly 41644219 41647187 307786 310754 NC_060934.1 JAAKGM020000042.1 97.98 True local misassembly 41643793 41647187 310755 314149 NC_060934.1 JAAKGM020000042.1 97.96 True local misassembly 41643793 41647925 314150 318282 NC_060934.1 JAAKGM020000042.1 97.92 True relocation, inconsistency = -779581 40868345 40868881 318283 318819 NC_060934.1 JAAKGM020000042.1 98.5 True relocation, inconsistency = 141682 41015144 41015952 323400 324208 NC_060934.1 JAAKGM020000042.1 98.89 True local misassembly 41016293 41017181 324209 325097 NC_060934.1 JAAKGM020000042.1 98.56 True local misassembly 41019558 41023208 325098 328744 NC_060934.1 JAAKGM020000042.1 98.39 True relocation, inconsistency = 620584 41643793 41647920 328745 332872 NC_060934.1 JAAKGM020000042.1 97.97 True relocation, inconsistency = -590369 41057552 41062928 332873 338247 NC_060934.1 JAAKGM020000042.1 97.82 True local misassembly 41056533 41062329 338304 344096 NC_060934.1 JAAKGM020000042.1 98.34 True relocation, inconsistency = -47195 41015144 41015661 344106 344623 NC_060934.1 JAAKGM020000042.1 97.68 True local misassembly 41016293 41017954 344913 346574 NC_060934.1 JAAKGM020000042.1 98.56 True indel: indel (<= 5bp) 41017957 41019050 346575 347668 NC_060934.1 JAAKGM020000042.1 98.08 True relocation, inconsistency = 616851 41636044 41637779 347811 349544 NC_060934.1 JAAKGM020000042.1 97.98 True local misassembly 41644567 41648462 349545 353436 NC_060934.1 JAAKGM020000042.1 98.23 True relocation, inconsistency = -12561 41636044 41638545 353579 356077 NC_060934.1 JAAKGM020000042.1 97.48 True relocation, inconsistency = -623303 41015274 41019210 356109 360043 NC_060934.1 JAAKGM020000042.1 98.37 True local misassembly 41015858 41022444 360767 367347 NC_060934.1 JAAKGM020000042.1 97.87 True relocation, inconsistency = 17312 41039757 41043653 367348 371242 NC_060934.1 JAAKGM020000042.1 98.6 True relocation, inconsistency = 598857 41644567 41648462 373299 377190 NC_060934.1 JAAKGM020000042.1 97.9 True local misassembly 41644727 41646261 377191 378725 NC_060934.1 JAAKGM020000042.1 98.41 True relocation, inconsistency = -10183 41636122 41638545 378769 381189 NC_060934.1 JAAKGM020000042.1 97.48 True local misassembly 41636044 41636760 381404 382120 NC_060934.1 JAAKGM020000042.1 97.76 True relocation, inconsistency = 7806 41644567 41648421 382121 385971 NC_060934.1 JAAKGM020000042.1 98.18 True local misassembly 41644686 41648622 385972 389906 NC_060934.1 JAAKGM020000042.1 98.15 True local misassembly 41647604 41648441 389907 390742 NC_060934.1 JAAKGM020000042.1 98.18 True fake: not a misassembly (possible transposable element) 41058413 41059292 390743 391622 NC_060934.1 JAAKGM020000042.1 98.5 True fake: not a misassembly (possible transposable element) 41644567 41648462 391623 395514 NC_060934.1 JAAKGM020000042.1 98.15 True CONTIG JAAKGM020000042.1 396716 misassembled 49458666 49462438 3777 1 NC_060929.1 JAAKGM020000043.1 98.14 True local misassembly 49456085 49462738 10435 3778 NC_060929.1 JAAKGM020000043.1 98.14 True local misassembly 49456085 49458802 13153 10436 NC_060929.1 JAAKGM020000043.1 98.12 True relocation, inconsistency = -7471 49454315 49463425 22398 13284 NC_060929.1 JAAKGM020000043.1 98.08 True local misassembly 49460184 49460767 22982 22399 NC_060929.1 JAAKGM020000043.1 98.53 True indel: indel (<= 5bp) 49458726 49460183 24442 22985 NC_060929.1 JAAKGM020000043.1 98.7 True relocation, inconsistency = 12227 49445185 49446498 25756 24443 NC_060929.1 JAAKGM020000043.1 98.16 True indel: stretch of mismatches 49443091 49445128 27850 25813 NC_060929.1 JAAKGM020000043.1 98.09 True indel: indel (<= 5bp) 49442535 49443090 28407 27852 NC_060929.1 JAAKGM020000043.1 96.04 True local misassembly 49440144 49441786 30458 28816 NC_060929.1 JAAKGM020000043.1 98.23 True indel: indel (<= 5bp) 49438391 49440143 32213 30461 NC_060929.1 JAAKGM020000043.1 98.17 True indel: stretch of mismatches 49437032 49438334 33572 32270 NC_060929.1 JAAKGM020000043.1 98.16 True indel: stretch of mismatches 49435716 49436975 34888 33629 NC_060929.1 JAAKGM020000043.1 96.35 True local misassembly 49431919 49436587 39702 35037 NC_060929.1 JAAKGM020000043.1 98.12 True local misassembly 49437032 49438033 40704 39703 NC_060929.1 JAAKGM020000043.1 98.47 True indel: stretch of mismatches 49435729 49436975 42007 40761 NC_060929.1 JAAKGM020000043.1 96.03 True relocation, inconsistency = -25815 49456052 49461543 47498 42008 NC_060929.1 JAAKGM020000043.1 97.98 True local misassembly 49448201 49459788 58751 47499 NC_060929.1 JAAKGM020000043.1 95.14 True local misassembly 49447329 49450918 62342 58752 NC_060929.1 JAAKGM020000043.1 97.85 True local misassembly 49445185 49446776 64823 63232 NC_060929.1 JAAKGM020000043.1 97.93 True indel: stretch of mismatches 49443091 49445128 66917 64880 NC_060929.1 JAAKGM020000043.1 98.14 True indel: indel (<= 5bp) 49442535 49443090 67474 66919 NC_060929.1 JAAKGM020000043.1 95.5 True relocation, inconsistency = -21057 49456085 49463425 74979 67641 NC_060929.1 JAAKGM020000043.1 97.74 True local misassembly 49456676 49460161 78465 74980 NC_060929.1 JAAKGM020000043.1 97.62 True local misassembly 49457135 49462447 83780 78466 NC_060929.1 JAAKGM020000043.1 97.88 True local misassembly 49456085 49462566 90264 83781 NC_060929.1 JAAKGM020000043.1 97.77 True local misassembly 49456676 49457443 91032 90265 NC_060929.1 JAAKGM020000043.1 97.62 True local misassembly 49456085 49462447 97397 91033 NC_060929.1 JAAKGM020000043.1 97.83 True local misassembly 49456676 49457443 98165 97398 NC_060929.1 JAAKGM020000043.1 97.62 True local misassembly 49457135 49462447 103480 98166 NC_060929.1 JAAKGM020000043.1 97.88 True local misassembly 49456085 49462566 109964 103481 NC_060929.1 JAAKGM020000043.1 97.77 True local misassembly 49456676 49457443 110732 109965 NC_060929.1 JAAKGM020000043.1 97.62 True local misassembly 49458657 49462447 114527 110733 NC_060929.1 JAAKGM020000043.1 97.88 True local misassembly 49456085 49462727 121174 114528 NC_060929.1 JAAKGM020000043.1 97.79 True local misassembly 49449941 49451671 122905 121175 NC_060929.1 JAAKGM020000043.1 98.06 True indel: stretch of mismatches 49448165 49449884 124681 122962 NC_060929.1 JAAKGM020000043.1 98.08 True local misassembly 49445185 49447825 127322 124682 NC_060929.1 JAAKGM020000043.1 97.96 True indel: stretch of mismatches 49443445 49445128 129062 127379 NC_060929.1 JAAKGM020000043.1 98.46 True local misassembly 49440144 49440725 129644 129063 NC_060929.1 JAAKGM020000043.1 97.94 True indel: indel (<= 5bp) 49438391 49440143 131399 129647 NC_060929.1 JAAKGM020000043.1 98.69 True indel: stretch of mismatches 49437032 49438334 132758 131456 NC_060929.1 JAAKGM020000043.1 98.54 True relocation, inconsistency = -25812 49457298 49462447 138308 133155 NC_060929.1 JAAKGM020000043.1 97.96 True local misassembly 49458666 49462727 142374 138309 NC_060929.1 JAAKGM020000043.1 97.92 True local misassembly 49456085 49462738 149032 142375 NC_060929.1 JAAKGM020000043.1 97.9 True local misassembly 49456821 49458802 151010 149033 NC_060929.1 JAAKGM020000043.1 97.65 True local misassembly 49456855 49462252 156403 151011 NC_060929.1 JAAKGM020000043.1 97.52 True local misassembly 49456683 49459344 159286 156633 NC_060929.1 JAAKGM020000043.1 97.71 True CONTIG JAAKGM020000043.1 159308 misassembled 42930361 42934584 4214 1 NC_060934.1 JAAKGM020000044.1 98.08 True local misassembly 42930083 42930657 6445 5871 NC_060934.1 JAAKGM020000044.1 97.22 True indel: indel (> 5bp) 42918847 42929762 17701 6799 NC_060934.1 JAAKGM020000044.1 96.64 True relocation, inconsistency = 52786 42849303 42866060 34430 17702 NC_060934.1 JAAKGM020000044.1 97.44 True relocation, inconsistency = -114605 42941078 42963907 57234 34431 NC_060934.1 JAAKGM020000044.1 97.23 True relocation, inconsistency = 37592 42901169 42903485 59551 57235 NC_060934.1 JAAKGM020000044.1 96.71 True local misassembly 42899702 42900644 61028 60086 NC_060934.1 JAAKGM020000044.1 96.82 True indel: indel (> 5bp) 42896715 42899701 64025 61039 NC_060934.1 JAAKGM020000044.1 97.39 True local misassembly 42894244 42896272 66054 64026 NC_060934.1 JAAKGM020000044.1 98.08 True relocation, inconsistency = 49699 42841908 42842925 68691 67674 NC_060934.1 JAAKGM020000044.1 97.84 True relocation, inconsistency = -36539 42850130 42878044 97420 69094 NC_060934.1 JAAKGM020000044.1 95.91 True relocation, inconsistency = -76444 42925178 42926573 98816 97421 NC_060934.1 JAAKGM020000044.1 98.0 True indel: indel (> 5bp) 42917975 42925177 106029 98827 NC_060934.1 JAAKGM020000044.1 98.54 True relocation, inconsistency = 52318 42865118 42865624 106568 106062 NC_060934.1 JAAKGM020000044.1 98.03 True indel: indel (> 5bp) 42861389 42865117 110307 106579 NC_060934.1 JAAKGM020000044.1 97.96 True indel: indel (<= 5bp) 42860228 42861127 111466 110567 NC_060934.1 JAAKGM020000044.1 99.0 True local misassembly 42857844 42859444 113519 111919 NC_060934.1 JAAKGM020000044.1 96.81 True indel: indel (> 5bp) 42856019 42857833 115334 113520 NC_060934.1 JAAKGM020000044.1 97.19 True indel: indel (> 5bp) 42854730 42856018 116633 115345 NC_060934.1 JAAKGM020000044.1 96.43 True relocation, inconsistency = -101781 42950758 42956019 122386 117125 NC_060934.1 JAAKGM020000044.1 98.5 True indel: indel (> 5bp) 42936414 42950352 136489 122759 NC_060934.1 JAAKGM020000044.1 96.26 True relocation, inconsistency = 69765 42865118 42866648 138020 136490 NC_060934.1 JAAKGM020000044.1 97.8 True local misassembly 42863350 42864853 140266 138763 NC_060934.1 JAAKGM020000044.1 96.74 True relocation, inconsistency = 14038 42844598 42849137 144969 140441 NC_060934.1 JAAKGM020000044.1 97.82 True relocation, inconsistency = -56440 42899702 42900657 146305 145350 NC_060934.1 JAAKGM020000044.1 97.38 True indel: indel (> 5bp) 42897457 42899701 148560 146316 NC_060934.1 JAAKGM020000044.1 98.55 True relocation, inconsistency = 19350 42861056 42878106 165389 148561 NC_060934.1 JAAKGM020000044.1 96.7 True relocation, inconsistency = -10319 42870663 42871199 166101 165565 NC_060934.1 JAAKGM020000044.1 98.14 True indel: indel (> 5bp) 42869384 42870336 167347 166395 NC_060934.1 JAAKGM020000044.1 97.48 True local misassembly 42864245 42869101 172398 167542 NC_060934.1 JAAKGM020000044.1 98.55 True local misassembly 42845883 42866060 192547 172399 NC_060934.1 JAAKGM020000044.1 97.47 True relocation, inconsistency = -15173 42853772 42861055 199842 192548 NC_060934.1 JAAKGM020000044.1 97.23 True relocation, inconsistency = -71571 42909463 42925341 215700 199844 NC_060934.1 JAAKGM020000044.1 96.88 True fake: not a misassembly (possible transposable element) 42882346 42884030 217395 215701 NC_060934.1 JAAKGM020000044.1 97.99 True fake: not a misassembly (possible transposable element) 42901169 42907740 223954 217438 NC_060934.1 JAAKGM020000044.1 96.88 True local misassembly 42893828 42900644 231325 224489 NC_060934.1 JAAKGM020000044.1 97.56 True relocation, inconsistency = 96398 42795213 42796095 233542 232660 NC_060934.1 JAAKGM020000044.1 96.17 True relocation, inconsistency = -133522 42924318 42928734 237969 233543 NC_060934.1 JAAKGM020000044.1 97.25 True local misassembly 42911954 42929775 255710 237970 NC_060934.1 JAAKGM020000044.1 97.36 True local misassembly 42913780 42917473 259352 255711 NC_060934.1 JAAKGM020000044.1 97.09 True relocation, inconsistency = 36905 42867076 42876850 269044 259377 NC_060934.1 JAAKGM020000044.1 96.63 True CONTIG JAAKGM020000044.1 269189 misassembled 92817903 92821246 3338 1 NC_060927.1 JAAKGM020000045.1 97.7 True relocation, inconsistency = -2041184 94855283 94858693 7141 3732 NC_060927.1 JAAKGM020000045.1 97.77 True relocation, inconsistency = 102162 94751246 94753120 9016 7142 NC_060927.1 JAAKGM020000045.1 98.64 True local misassembly 94750612 94751121 9771 9262 NC_060927.1 JAAKGM020000045.1 96.47 True relocation, inconsistency = -512531 95259237 95262488 13675 10426 NC_060927.1 JAAKGM020000045.1 97.36 True relocation, inconsistency = 497470 94760075 94761674 15367 13768 NC_060927.1 JAAKGM020000045.1 99.12 True indel: indel (> 5bp) 94758314 94760074 17200 15440 NC_060927.1 JAAKGM020000045.1 98.24 True indel: indel (<= 5bp) 94757217 94758313 18300 17204 NC_060927.1 JAAKGM020000045.1 96.17 True fake: not a misassembly (possible transposable element) 94714459 94717380 21399 18478 NC_060927.1 JAAKGM020000045.1 98.8 True fake: not a misassembly (possible transposable element) 94751279 94753242 23363 21400 NC_060927.1 JAAKGM020000045.1 99.19 True relocation, inconsistency = 1928189 92817595 92822843 28854 23610 NC_060927.1 JAAKGM020000045.1 98.04 True relocation, inconsistency = 28255 92785834 92788876 32355 29318 NC_060927.1 JAAKGM020000045.1 97.8 True translocation 1474649 1477841 35737 32539 NC_060939.1 JAAKGM020000045.1 95.76 True translocation 94751246 94753489 37981 35738 NC_060927.1 JAAKGM020000045.1 98.64 True local misassembly 94750612 94751121 38736 38227 NC_060927.1 JAAKGM020000045.1 96.47 True relocation, inconsistency = -512531 95259826 95262488 42049 39391 NC_060927.1 JAAKGM020000045.1 97.79 True relocation, inconsistency = 542589 94714459 94717077 44827 42209 NC_060927.1 JAAKGM020000045.1 98.85 True local misassembly 94713606 94714327 45549 44828 NC_060927.1 JAAKGM020000045.1 98.61 True relocation, inconsistency = -50787 94757217 94763419 52802 46523 NC_060927.1 JAAKGM020000045.1 96.51 True fake: not a misassembly (possible transposable element) 94714459 94717380 55901 52980 NC_060927.1 JAAKGM020000045.1 98.77 True fake: not a misassembly (possible transposable element) 94751377 94753242 57767 55902 NC_060927.1 JAAKGM020000045.1 99.14 True relocation, inconsistency = 445788 94303610 94305588 59736 57768 NC_060927.1 JAAKGM020000045.1 96.45 True relocation, inconsistency = 1479893 92817595 92823716 65860 59737 NC_060927.1 JAAKGM020000045.1 97.78 True relocation, inconsistency = 28255 92785555 92788876 69640 66324 NC_060927.1 JAAKGM020000045.1 98.22 True relocation, inconsistency = -1967287 94751246 94752841 71236 69641 NC_060927.1 JAAKGM020000045.1 98.68 True local misassembly 94750612 94751121 71991 71482 NC_060927.1 JAAKGM020000045.1 96.47 True relocation, inconsistency = -512531 95259237 95262488 75895 72646 NC_060927.1 JAAKGM020000045.1 97.33 True relocation, inconsistency = 497470 94760075 94761674 77587 75988 NC_060927.1 JAAKGM020000045.1 99.12 True local misassembly 94760305 94762179 79568 77694 NC_060927.1 JAAKGM020000045.1 97.07 True local misassembly 94756810 94759488 82426 79748 NC_060927.1 JAAKGM020000045.1 98.81 True CONTIG JAAKGM020000045.1 82482 misassembled 49337458 49338590 1129 1 NC_060929.1 JAAKGM020000046.1 97.97 True relocation, inconsistency = -125001 49460040 49462456 3552 1132 NC_060929.1 JAAKGM020000046.1 98.13 True local misassembly 49447329 49454263 10492 3553 NC_060929.1 JAAKGM020000046.1 97.88 True local misassembly 49449941 49451549 12973 11365 NC_060929.1 JAAKGM020000046.1 98.07 True indel: stretch of mismatches 49447847 49449884 15067 13030 NC_060929.1 JAAKGM020000046.1 98.18 True indel: indel (<= 5bp) 49447291 49447846 15624 15069 NC_060929.1 JAAKGM020000046.1 95.5 True local misassembly 49447329 49453053 21363 15636 NC_060929.1 JAAKGM020000046.1 97.96 True relocation, inconsistency = 76091 49369833 49370357 22768 22244 NC_060929.1 JAAKGM020000046.1 97.07 True relocation, inconsistency = -83221 49447329 49453053 28496 22769 NC_060929.1 JAAKGM020000046.1 97.96 True local misassembly 49445185 49446776 30977 29386 NC_060929.1 JAAKGM020000046.1 97.99 True indel: stretch of mismatches 49443091 49445128 33071 31034 NC_060929.1 JAAKGM020000046.1 98.14 True indel: indel (<= 5bp) 49442535 49443090 33628 33073 NC_060929.1 JAAKGM020000046.1 95.5 True relocation, inconsistency = -21057 49456085 49463425 41133 33795 NC_060929.1 JAAKGM020000046.1 97.77 True local misassembly 49457307 49461518 45347 41134 NC_060929.1 JAAKGM020000046.1 97.76 True local misassembly 49456085 49462738 52005 45348 NC_060929.1 JAAKGM020000046.1 97.82 True local misassembly 49456676 49461518 56850 52006 NC_060929.1 JAAKGM020000046.1 97.67 True local misassembly 49457307 49462107 61655 56851 NC_060929.1 JAAKGM020000046.1 97.99 True local misassembly 49456085 49462738 68313 61656 NC_060929.1 JAAKGM020000046.1 97.7 True local misassembly 49458666 49461518 71168 68314 NC_060929.1 JAAKGM020000046.1 97.7 True local misassembly 49456085 49462738 77826 71169 NC_060929.1 JAAKGM020000046.1 98.09 True local misassembly 49456493 49461518 82853 77827 NC_060929.1 JAAKGM020000046.1 97.81 True relocation, inconsistency = 30232 49424857 49426260 84257 82854 NC_060929.1 JAAKGM020000046.1 98.08 True indel: indel (<= 5bp) 49422369 49424406 86747 84710 NC_060929.1 JAAKGM020000046.1 97.99 True indel: indel (<= 5bp) 49421813 49422368 87304 86749 NC_060929.1 JAAKGM020000046.1 95.32 True relocation, inconsistency = -41779 49456085 49463425 94809 87471 NC_060929.1 JAAKGM020000046.1 97.81 True local misassembly 49451694 49453028 96144 94810 NC_060929.1 JAAKGM020000046.1 98.01 True indel: indel (<= 5bp) 49449941 49451693 97899 96147 NC_060929.1 JAAKGM020000046.1 98.06 True indel: indel (<= 5bp) 49448186 49449939 99653 97900 NC_060929.1 JAAKGM020000046.1 98.03 True local misassembly 49448201 49453957 105414 99654 NC_060929.1 JAAKGM020000046.1 98.21 True relocation, inconsistency = 83223 49363461 49364977 106931 105415 NC_060929.1 JAAKGM020000046.1 97.85 True CONTIG JAAKGM020000046.1 106960 misassembled 41635971 41638430 2484 29 NC_060934.1 JAAKGM020000047.1 97.76 True relocation, inconsistency = -14595 41644567 41647440 8480 5610 NC_060934.1 JAAKGM020000047.1 98.12 True relocation, inconsistency = 284907 41357371 41358802 10769 9338 NC_060934.1 JAAKGM020000047.1 98.11 True relocation, inconsistency = -176966 41526796 41532869 18308 12237 NC_060934.1 JAAKGM020000047.1 97.25 True relocation, inconsistency = 131152 41393926 41395642 20026 18310 NC_060934.1 JAAKGM020000047.1 97.26 True relocation, inconsistency = 37331 41354570 41355366 22051 21255 NC_060934.1 JAAKGM020000047.1 97.78 True relocation, inconsistency = -289660 41641599 41644229 24682 22052 NC_060934.1 JAAKGM020000047.1 97.34 True local misassembly 41638430 41640834 27512 25108 NC_060934.1 JAAKGM020000047.1 97.63 True indel: stretch of mismatches 41637497 41638204 28445 27738 NC_060934.1 JAAKGM020000047.1 98.73 True fake: not a misassembly (possible transposable element) 41354570 41355366 30198 29402 NC_060934.1 JAAKGM020000047.1 97.53 True fake: not a misassembly (possible transposable element) 41637497 41640835 33537 30199 NC_060934.1 JAAKGM020000047.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 35290 34494 NC_060934.1 JAAKGM020000047.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 38629 35291 NC_060934.1 JAAKGM020000047.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 40382 39586 NC_060934.1 JAAKGM020000047.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 43721 40383 NC_060934.1 JAAKGM020000047.1 97.9 True fake: not a misassembly (possible transposable element) 41354570 41355366 45474 44678 NC_060934.1 JAAKGM020000047.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 48813 45475 NC_060934.1 JAAKGM020000047.1 97.87 True fake: not a misassembly (possible transposable element) 41354570 41355366 50566 49770 NC_060934.1 JAAKGM020000047.1 97.53 True fake: not a misassembly (possible transposable element) 41637867 41640835 53535 50567 NC_060934.1 JAAKGM020000047.1 97.88 True relocation, inconsistency = 1735121 39901960 39902701 54321 53580 NC_060934.1 JAAKGM020000047.1 98.31 True fake: not a misassembly (possible transposable element) 40157621 40161919 58620 54322 NC_060934.1 JAAKGM020000047.1 98.14 True fake: not a misassembly (possible transposable element) 39898194 39902749 63175 58621 NC_060934.1 JAAKGM020000047.1 98.18 True relocation, inconsistency = -1750058 41647604 41648251 63823 63176 NC_060934.1 JAAKGM020000047.1 98.15 True local misassembly 41644567 41648622 67873 63824 NC_060934.1 JAAKGM020000047.1 98.2 True local misassembly 41644567 41648622 71943 67894 NC_060934.1 JAAKGM020000047.1 98.1 True local misassembly 41644567 41648622 76015 71964 NC_060934.1 JAAKGM020000047.1 98.13 True local misassembly 41644567 41648622 80085 76036 NC_060934.1 JAAKGM020000047.1 97.98 True local misassembly 41635971 41639796 83928 80106 NC_060934.1 JAAKGM020000047.1 97.52 True relocation, inconsistency = 798070 40835623 40837651 86204 84178 NC_060934.1 JAAKGM020000047.1 97.54 True relocation, inconsistency = -813009 41644567 41648622 90263 86214 NC_060934.1 JAAKGM020000047.1 98.25 True local misassembly 41645566 41648622 93336 90284 NC_060934.1 JAAKGM020000047.1 98.18 True local misassembly 41644567 41648622 97388 93337 NC_060934.1 JAAKGM020000047.1 98.18 True local misassembly 41644567 41648622 101460 97409 NC_060934.1 JAAKGM020000047.1 97.81 True local misassembly 41644567 41645585 102477 101461 NC_060934.1 JAAKGM020000047.1 98.03 True local misassembly 41643793 41648622 107325 102498 NC_060934.1 JAAKGM020000047.1 98.07 True fake: not a misassembly (possible transposable element) 41039719 41043237 110842 107326 NC_060934.1 JAAKGM020000047.1 98.48 True fake: not a misassembly (possible transposable element) 41636033 41638545 113385 110876 NC_060934.1 JAAKGM020000047.1 97.37 True relocation, inconsistency = -17992 41644567 41648622 122839 118788 NC_060934.1 JAAKGM020000047.1 98.52 True local misassembly 41646585 41648622 124895 122860 NC_060934.1 JAAKGM020000047.1 98.08 True relocation, inconsistency = 584255 41056533 41062329 130688 124896 NC_060934.1 JAAKGM020000047.1 98.34 True relocation, inconsistency = 1248647 39803672 39805532 134902 133042 NC_060934.1 JAAKGM020000047.1 98.58 True relocation, inconsistency = -1843769 41646585 41647440 135758 134903 NC_060934.1 JAAKGM020000047.1 97.88 True local misassembly 41644567 41648622 139808 135759 NC_060934.1 JAAKGM020000047.1 98.05 True local misassembly 41647604 41648622 140845 139829 NC_060934.1 JAAKGM020000047.1 98.13 True relocation, inconsistency = 585274 41058254 41062329 144917 140846 NC_060934.1 JAAKGM020000047.1 98.26 True local misassembly 41056533 41062329 150710 144918 NC_060934.1 JAAKGM020000047.1 98.29 True relocation, inconsistency = -590369 41643793 41646901 153819 150711 NC_060934.1 JAAKGM020000047.1 97.99 True relocation, inconsistency = 581879 41061076 41061913 154657 153820 NC_060934.1 JAAKGM020000047.1 98.17 True indel: indel (<= 5bp) 41058413 41061073 157318 154658 NC_060934.1 JAAKGM020000047.1 98.68 True local misassembly 41057000 41058072 158391 157319 NC_060934.1 JAAKGM020000047.1 98.6 True relocation, inconsistency = 1256123 39799984 39800624 159284 158644 NC_060934.1 JAAKGM020000047.1 97.82 True local misassembly 39798645 39799643 160283 159285 NC_060934.1 JAAKGM020000047.1 98.3 True relocation, inconsistency = -1852261 41646585 41647586 164604 163603 NC_060934.1 JAAKGM020000047.1 97.81 True local misassembly 41644567 41648622 168658 164605 NC_060934.1 JAAKGM020000047.1 97.81 True local misassembly 41644567 41647586 173068 170053 NC_060934.1 JAAKGM020000047.1 98.31 True relocation, inconsistency = 582217 41056533 41062329 178879 173089 NC_060934.1 JAAKGM020000047.1 98.31 True local misassembly 41056533 41061627 183968 178880 NC_060934.1 JAAKGM020000047.1 98.27 True relocation, inconsistency = -591388 41646585 41647920 185302 183969 NC_060934.1 JAAKGM020000047.1 97.93 True local misassembly 41644567 41648622 189354 185303 NC_060934.1 JAAKGM020000047.1 98.2 True local misassembly 41644567 41647623 192409 189355 NC_060934.1 JAAKGM020000047.1 98.18 True local misassembly 41645566 41648622 195482 192430 NC_060934.1 JAAKGM020000047.1 97.86 True local misassembly 41644808 41648622 199295 195483 NC_060934.1 JAAKGM020000047.1 98.03 True relocation, inconsistency = 581879 41057552 41062928 204670 199296 NC_060934.1 JAAKGM020000047.1 98.31 True local misassembly 41061076 41062928 206579 204727 NC_060934.1 JAAKGM020000047.1 98.17 True indel: indel (<= 5bp) 41058413 41061073 209240 206580 NC_060934.1 JAAKGM020000047.1 98.53 True local misassembly 41057000 41058072 210313 209241 NC_060934.1 JAAKGM020000047.1 98.51 True local misassembly 41056533 41062329 216886 211094 NC_060934.1 JAAKGM020000047.1 98.22 True relocation, inconsistency = -572046 41626485 41627263 218980 218202 NC_060934.1 JAAKGM020000047.1 97.71 True relocation, inconsistency = 582232 41039719 41044252 223512 218981 NC_060934.1 JAAKGM020000047.1 98.48 True relocation, inconsistency = -297663 41335430 41336815 225464 224079 NC_060934.1 JAAKGM020000047.1 97.76 True relocation, inconsistency = 272196 41058413 41062092 230285 226606 NC_060934.1 JAAKGM020000047.1 98.51 True local misassembly 41057235 41057762 231121 230594 NC_060934.1 JAAKGM020000047.1 98.43 True local misassembly 41061076 41062329 232375 231122 NC_060934.1 JAAKGM020000047.1 98.25 True indel: indel (<= 5bp) 41058413 41061073 235036 232376 NC_060934.1 JAAKGM020000047.1 98.42 True relocation, inconsistency = -580184 41635971 41638545 237659 235088 NC_060934.1 JAAKGM020000047.1 97.4 True relocation, inconsistency = 589013 41039719 41043653 244896 240964 NC_060934.1 JAAKGM020000047.1 98.65 True local misassembly 41039758 41043454 248589 244897 NC_060934.1 JAAKGM020000047.1 98.55 True relocation, inconsistency = -608705 41644567 41648462 252481 248590 NC_060934.1 JAAKGM020000047.1 98.13 True local misassembly 41644686 41648622 256434 252502 NC_060934.1 JAAKGM020000047.1 98.2 True relocation, inconsistency = 807235 40836614 40837450 257269 256435 NC_060934.1 JAAKGM020000047.1 97.27 True relocation, inconsistency = -207021 41040597 41043634 260305 257270 NC_060934.1 JAAKGM020000047.1 98.52 True relocation, inconsistency = -608026 41643793 41648622 265133 260306 NC_060934.1 JAAKGM020000047.1 97.91 True local misassembly 41644567 41648622 269788 265737 NC_060934.1 JAAKGM020000047.1 98.27 True local misassembly 41644686 41647623 272724 269789 NC_060934.1 JAAKGM020000047.1 98.22 True relocation, inconsistency = 775845 40867013 40868840 274552 272725 NC_060934.1 JAAKGM020000047.1 98.56 True relocation, inconsistency = 29352 40834267 40837634 277947 274579 NC_060934.1 JAAKGM020000047.1 97.54 True relocation, inconsistency = -808933 41641414 41643173 279733 277974 NC_060934.1 JAAKGM020000047.1 97.48 True relocation, inconsistency = 617190 41019604 41024223 284353 279734 NC_060934.1 JAAKGM020000047.1 97.99 True relocation, inconsistency = -627036 41643793 41646639 287200 284354 NC_060934.1 JAAKGM020000047.1 97.89 True local misassembly 41644567 41648622 291853 287804 NC_060934.1 JAAKGM020000047.1 98.22 True local misassembly 41643793 41648622 296699 291874 NC_060934.1 JAAKGM020000047.1 98.22 True local misassembly 41645788 41648206 299118 296700 NC_060934.1 JAAKGM020000047.1 98.09 True local misassembly 41643793 41647825 303151 299119 NC_060934.1 JAAKGM020000047.1 97.97 True relocation, inconsistency = 600555 41040301 41043237 306084 303152 NC_060934.1 JAAKGM020000047.1 98.46 True CONTIG JAAKGM020000047.1 308143 misassembled 49456314 49461518 1 5207 NC_060929.1 JAAKGM020000048.1 97.67 True local misassembly 49456085 49462738 5208 11865 NC_060929.1 JAAKGM020000048.1 97.81 True local misassembly 49457307 49460161 11866 14720 NC_060929.1 JAAKGM020000048.1 97.81 True local misassembly 49456085 49462738 14721 21378 NC_060929.1 JAAKGM020000048.1 97.85 True local misassembly 49457307 49461518 21379 25592 NC_060929.1 JAAKGM020000048.1 97.78 True local misassembly 49456085 49462738 25593 32250 NC_060929.1 JAAKGM020000048.1 97.87 True local misassembly 49458666 49462738 32251 36327 NC_060929.1 JAAKGM020000048.1 98.23 True local misassembly 49459162 49460860 36825 38525 NC_060929.1 JAAKGM020000048.1 98.35 True relocation, inconsistency = -36007 49425217 49427603 38889 41274 NC_060929.1 JAAKGM020000048.1 98.62 True relocation, inconsistency = 125719 49553656 49555254 41608 43206 NC_060929.1 JAAKGM020000048.1 98.56 True relocation, inconsistency = 14952 49570647 49571656 43647 44656 NC_060929.1 JAAKGM020000048.1 98.32 True relocation, inconsistency = -217784 49356039 49357628 46823 48412 NC_060929.1 JAAKGM020000048.1 99.06 True CONTIG JAAKGM020000048.1 49414 misassembled 49456683 49461518 47 4884 NC_060929.1 JAAKGM020000049.1 97.86 True local misassembly 49456085 49462146 4885 10950 NC_060929.1 JAAKGM020000049.1 97.99 True local misassembly 49456375 49460161 10951 14737 NC_060929.1 JAAKGM020000049.1 97.58 True local misassembly 49456085 49462738 14738 21395 NC_060929.1 JAAKGM020000049.1 97.87 True local misassembly 49458666 49461518 21396 24250 NC_060929.1 JAAKGM020000049.1 97.94 True local misassembly 49456085 49462071 24251 30241 NC_060929.1 JAAKGM020000049.1 97.93 True CONTIG JAAKGM020000049.1 30260 correct 58377293 58380249 2957 1 NC_060930.1 JAAKGM020000050.1 99.33 True local misassembly 58374207 58378478 7229 2958 NC_060930.1 JAAKGM020000050.1 98.43 True local misassembly 58374236 58378449 11443 7230 NC_060930.1 JAAKGM020000050.1 98.41 True local misassembly 58374207 58378478 15715 11444 NC_060930.1 JAAKGM020000050.1 98.41 True local misassembly 58374236 58378449 19929 15716 NC_060930.1 JAAKGM020000050.1 98.43 True local misassembly 58374207 58378478 24201 19930 NC_060930.1 JAAKGM020000050.1 98.43 True local misassembly 58374236 58378449 28415 24202 NC_060930.1 JAAKGM020000050.1 98.43 True local misassembly 58374236 58378478 32658 28416 NC_060930.1 JAAKGM020000050.1 98.41 True local misassembly 58368091 58378478 43044 32659 NC_060930.1 JAAKGM020000050.1 98.18 True local misassembly 58368106 58372335 47272 43045 NC_060930.1 JAAKGM020000050.1 98.0 True local misassembly 58368091 58372350 51530 47273 NC_060930.1 JAAKGM020000050.1 97.98 True local misassembly 58359999 58363160 54692 51531 NC_060930.1 JAAKGM020000050.1 98.4 True local misassembly 58355874 58360118 59492 55250 NC_060930.1 JAAKGM020000050.1 98.0 True local misassembly 58352829 58360118 66778 59493 NC_060930.1 JAAKGM020000050.1 98.06 True relocation, inconsistency = -31763 58374518 58384591 76853 66779 NC_060930.1 JAAKGM020000050.1 98.83 True CONTIG JAAKGM020000050.1 76853 misassembled 49447343 49454263 7208 284 NC_060929.1 JAAKGM020000051.1 98.02 True relocation, inconsistency = 753846 48692091 48693452 8615 7253 NC_060929.1 JAAKGM020000051.1 98.68 True relocation, inconsistency = -837770 49528934 49529786 9542 8690 NC_060929.1 JAAKGM020000051.1 97.77 True relocation, inconsistency = 74073 49450191 49453617 14216 10786 NC_060929.1 JAAKGM020000051.1 98.25 True local misassembly 49448526 49454263 19958 14217 NC_060929.1 JAAKGM020000051.1 98.06 True local misassembly 49447329 49453617 26252 19959 NC_060929.1 JAAKGM020000051.1 98.13 True relocation, inconsistency = -16301 49456085 49463425 33801 26457 NC_060929.1 JAAKGM020000051.1 98.14 True local misassembly 49448526 49451671 36947 33802 NC_060929.1 JAAKGM020000051.1 98.2 True local misassembly 49447329 49453617 43241 36948 NC_060929.1 JAAKGM020000051.1 98.06 True relocation, inconsistency = -15961 49457307 49462107 49228 44424 NC_060929.1 JAAKGM020000051.1 98.04 True local misassembly 49456085 49462738 55886 49229 NC_060929.1 JAAKGM020000051.1 97.9 True local misassembly 49457307 49461518 60100 55887 NC_060929.1 JAAKGM020000051.1 97.94 True local misassembly 49456085 49462738 66758 60101 NC_060929.1 JAAKGM020000051.1 97.96 True local misassembly 49457307 49461518 70972 66759 NC_060929.1 JAAKGM020000051.1 97.76 True local misassembly 49457307 49462738 76407 70973 NC_060929.1 JAAKGM020000051.1 97.84 True local misassembly 49456085 49462738 83065 76408 NC_060929.1 JAAKGM020000051.1 97.87 True local misassembly 49456085 49458430 85783 83437 NC_060929.1 JAAKGM020000051.1 98.04 True CONTIG JAAKGM020000051.1 85973 misassembled 49449043 49453028 1 3988 NC_060929.1 JAAKGM020000052.1 98.22 True local misassembly 49456085 49462447 3989 10355 NC_060929.1 JAAKGM020000052.1 98.1 True local misassembly 49459394 49460161 10356 11123 NC_060929.1 JAAKGM020000052.1 98.15 True local misassembly 49456085 49460855 11124 15896 NC_060929.1 JAAKGM020000052.1 98.08 True local misassembly 49456441 49461518 15897 20976 NC_060929.1 JAAKGM020000052.1 97.86 True local misassembly 49456085 49462738 20977 27634 NC_060929.1 JAAKGM020000052.1 97.88 True local misassembly 49457307 49461518 27635 31848 NC_060929.1 JAAKGM020000052.1 97.94 True local misassembly 49456085 49462738 31849 38506 NC_060929.1 JAAKGM020000052.1 97.82 True local misassembly 49457307 49461518 38507 42720 NC_060929.1 JAAKGM020000052.1 97.88 True local misassembly 49456085 49462738 42721 49378 NC_060929.1 JAAKGM020000052.1 97.87 True local misassembly 49457307 49461518 49379 53592 NC_060929.1 JAAKGM020000052.1 97.85 True local misassembly 49456085 49462252 53593 59762 NC_060929.1 JAAKGM020000052.1 97.8 True CONTIG JAAKGM020000052.1 59791 correct 49394528 49395586 1 1059 NC_060929.1 JAAKGM020000053.1 96.88 True relocation, inconsistency = 113809 49509474 49510026 1138 1690 NC_060929.1 JAAKGM020000053.1 96.93 True relocation, inconsistency = -1068778 48441421 48441936 1863 2378 NC_060929.1 JAAKGM020000053.1 98.62 True relocation, inconsistency = 1128253 49570190 49571533 2379 3722 NC_060929.1 JAAKGM020000053.1 96.8 True relocation, inconsistency = -146449 49425470 49430179 4108 8816 NC_060929.1 JAAKGM020000053.1 97.24 True local misassembly 49432066 49436571 9683 14188 NC_060929.1 JAAKGM020000053.1 97.74 True local misassembly 49435215 49435955 14189 14931 NC_060929.1 JAAKGM020000053.1 98.19 True local misassembly 49438009 49441356 15626 18975 NC_060929.1 JAAKGM020000053.1 97.38 True relocation, inconsistency = -8830 49432527 49433634 18976 20083 NC_060929.1 JAAKGM020000053.1 98.38 True indel: indel (<= 5bp) 49433636 49434471 20084 20919 NC_060929.1 JAAKGM020000053.1 98.21 True local misassembly 49434812 49435388 20920 21496 NC_060929.1 JAAKGM020000053.1 98.96 True indel: indel (<= 5bp) 49435389 49436095 21499 22205 NC_060929.1 JAAKGM020000053.1 98.3 True indel: indel (<= 5bp) 49436318 49441356 22427 27467 NC_060929.1 JAAKGM020000053.1 97.88 True relocation, inconsistency = 14606 49456085 49462738 27590 34247 NC_060929.1 JAAKGM020000053.1 97.94 True local misassembly 49457307 49461518 34248 38461 NC_060929.1 JAAKGM020000053.1 98.09 True local misassembly 49456085 49462727 38462 45108 NC_060929.1 JAAKGM020000053.1 97.88 True local misassembly 49457298 49462447 45109 50262 NC_060929.1 JAAKGM020000053.1 97.88 True relocation, inconsistency = -14262 49448186 49449884 50263 51961 NC_060929.1 JAAKGM020000053.1 98.02 True indel: stretch of mismatches 49449941 49451693 52018 53770 NC_060929.1 JAAKGM020000053.1 98.06 True indel: indel (<= 5bp) 49451694 49453028 53773 55107 NC_060929.1 JAAKGM020000053.1 97.94 True local misassembly 49456085 49463425 55108 62448 NC_060929.1 JAAKGM020000053.1 97.84 True relocation, inconsistency = -21057 49442535 49443090 62615 63170 NC_060929.1 JAAKGM020000053.1 95.5 True indel: indel (<= 5bp) 49443091 49445128 63172 65209 NC_060929.1 JAAKGM020000053.1 98.14 True indel: stretch of mismatches 49445185 49446776 65266 66857 NC_060929.1 JAAKGM020000053.1 97.99 True local misassembly 49449367 49450918 67747 69298 NC_060929.1 JAAKGM020000053.1 97.98 True local misassembly 49448201 49455110 69299 76207 NC_060929.1 JAAKGM020000053.1 98.24 True local misassembly 49456085 49457015 77184 78114 NC_060929.1 JAAKGM020000053.1 98.28 True indel: stretch of mismatches 49457072 49458374 78171 79473 NC_060929.1 JAAKGM020000053.1 98.16 True indel: stretch of mismatches 49458431 49460183 79530 81282 NC_060929.1 JAAKGM020000053.1 98.4 True indel: indel (<= 5bp) 49460184 49461518 81285 82619 NC_060929.1 JAAKGM020000053.1 98.38 True local misassembly 49456085 49462738 82620 89277 NC_060929.1 JAAKGM020000053.1 97.96 True local misassembly 49460025 49461518 89278 90773 NC_060929.1 JAAKGM020000053.1 97.98 True local misassembly 49456085 49459913 90774 94603 NC_060929.1 JAAKGM020000053.1 97.68 True CONTIG JAAKGM020000053.1 94637 misassembled 44389830 44398024 8452 256 NC_060932.1 JAAKGM020000054.1 99.41 True local misassembly 44392929 44394927 10451 8453 NC_060932.1 JAAKGM020000054.1 99.41 True local misassembly 44392929 44398024 15549 10452 NC_060932.1 JAAKGM020000054.1 99.41 True local misassembly 44389830 44398024 23748 15550 NC_060932.1 JAAKGM020000054.1 99.39 True local misassembly 44392929 44394927 25747 23749 NC_060932.1 JAAKGM020000054.1 99.4 True local misassembly 44389830 44398024 33945 25748 NC_060932.1 JAAKGM020000054.1 99.35 True local misassembly 44394277 44394927 34596 33946 NC_060932.1 JAAKGM020000054.1 99.17 True CONTIG JAAKGM020000054.1 34596 correct 41645042 41646829 1 1786 NC_060934.1 JAAKGM020000055.1 98.66 True local misassembly 41644567 41647623 2239 5291 NC_060934.1 JAAKGM020000055.1 98.69 True local misassembly 41644567 41648622 5292 9344 NC_060934.1 JAAKGM020000055.1 98.67 True local misassembly 41644567 41648622 9365 13416 NC_060934.1 JAAKGM020000055.1 98.72 True local misassembly 41645566 41647623 13417 15471 NC_060934.1 JAAKGM020000055.1 98.59 True local misassembly 41644567 41648622 15472 19521 NC_060934.1 JAAKGM020000055.1 98.64 True local misassembly 41646585 41648622 19522 21554 NC_060934.1 JAAKGM020000055.1 98.62 True local misassembly 41644567 41648622 21575 25624 NC_060934.1 JAAKGM020000055.1 98.64 True local misassembly 41645566 41648622 25625 28676 NC_060934.1 JAAKGM020000055.1 98.69 True local misassembly 41644567 41647973 29714 33115 NC_060934.1 JAAKGM020000055.1 98.65 True CONTIG JAAKGM020000055.1 33115 correct 58346187 58410252 1 64062 NC_060930.1 JAAKGM020000056.1 98.51 True CONTIG JAAKGM020000056.1 64062 correct 49456085 49462124 43 6086 NC_060929.1 JAAKGM020000057.1 97.88 True relocation, inconsistency = -25472 49436653 49448240 6087 17334 NC_060929.1 JAAKGM020000057.1 95.12 True local misassembly 49447291 49447846 17404 17959 NC_060929.1 JAAKGM020000057.1 96.04 True indel: indel (<= 5bp) 49447847 49449884 17961 19998 NC_060929.1 JAAKGM020000057.1 98.18 True indel: stretch of mismatches 49449941 49451693 20055 21807 NC_060929.1 JAAKGM020000057.1 98.12 True relocation, inconsistency = -11552 49440144 49441106 21810 22772 NC_060929.1 JAAKGM020000057.1 97.69 True local misassembly 49438391 49440143 22773 24525 NC_060929.1 JAAKGM020000057.1 98.12 True indel: indel (<= 5bp) 49440144 49441671 24528 26055 NC_060929.1 JAAKGM020000057.1 98.04 True local misassembly 49442535 49443090 26575 27130 NC_060929.1 JAAKGM020000057.1 95.5 True indel: indel (<= 5bp) 49443091 49445128 27132 29169 NC_060929.1 JAAKGM020000057.1 98.14 True indel: stretch of mismatches 49445185 49446776 29226 30817 NC_060929.1 JAAKGM020000057.1 97.99 True relocation, inconsistency = 8832 49456498 49458802 31707 34011 NC_060929.1 JAAKGM020000057.1 97.87 True local misassembly 49456085 49462738 34012 40669 NC_060929.1 JAAKGM020000057.1 98.0 True local misassembly 49457307 49461518 40670 44883 NC_060929.1 JAAKGM020000057.1 97.87 True local misassembly 49456085 49460161 44884 48960 NC_060929.1 JAAKGM020000057.1 97.89 True local misassembly 49456085 49462724 48961 55604 NC_060929.1 JAAKGM020000057.1 97.79 True local misassembly 49457293 49462011 55605 60326 NC_060929.1 JAAKGM020000057.1 97.88 True CONTIG JAAKGM020000057.1 60326 misassembled 44133757 44165615 31874 13 NC_060941.1 JAAKGM020000058.1 98.77 True CONTIG JAAKGM020000058.1 31874 correct 49457307 49461773 4471 1 NC_060929.1 JAAKGM020000059.1 97.93 True local misassembly 49456085 49462738 11129 4472 NC_060929.1 JAAKGM020000059.1 97.9 True local misassembly 49458666 49461518 13984 11130 NC_060929.1 JAAKGM020000059.1 98.02 True local misassembly 49456375 49462738 20352 13985 NC_060929.1 JAAKGM020000059.1 97.72 True local misassembly 49457307 49460789 23837 20353 NC_060929.1 JAAKGM020000059.1 98.0 True local misassembly 49456085 49462738 30495 23838 NC_060929.1 JAAKGM020000059.1 97.91 True local misassembly 49456085 49461518 35931 30496 NC_060929.1 JAAKGM020000059.1 97.88 True local misassembly 49460184 49461518 37266 35932 NC_060929.1 JAAKGM020000059.1 98.23 True indel: indel (<= 5bp) 49458454 49460183 38998 37269 NC_060929.1 JAAKGM020000059.1 98.34 True relocation, inconsistency = 23776 49432143 49434677 41532 38999 NC_060929.1 JAAKGM020000059.1 98.3 True CONTIG JAAKGM020000059.1 41532 misassembled 49456148 49461518 1 5373 NC_060929.1 JAAKGM020000060.1 97.82 True local misassembly 49456085 49462738 5374 12031 NC_060929.1 JAAKGM020000060.1 97.82 True local misassembly 49457307 49461518 12032 16245 NC_060929.1 JAAKGM020000060.1 97.82 True local misassembly 49456085 49462738 16246 22903 NC_060929.1 JAAKGM020000060.1 97.84 True local misassembly 49457307 49461518 22904 27117 NC_060929.1 JAAKGM020000060.1 97.76 True local misassembly 49456085 49462738 27118 33775 NC_060929.1 JAAKGM020000060.1 97.81 True local misassembly 49457307 49461518 33776 37989 NC_060929.1 JAAKGM020000060.1 97.78 True local misassembly 49456085 49462738 37990 44647 NC_060929.1 JAAKGM020000060.1 97.81 True CONTIG JAAKGM020000060.1 44735 correct 51922308 51923177 425 1294 NC_060928.1 JAAKGM020000061.1 97.24 True local misassembly 51927962 51928484 6681 7203 NC_060928.1 JAAKGM020000061.1 96.94 True indel: indel (> 5bp) 51928485 51929372 7247 8134 NC_060928.1 JAAKGM020000061.1 97.18 True relocation, inconsistency = -1219252 50710475 50712878 8489 10934 NC_060928.1 JAAKGM020000061.1 96.12 True relocation, inconsistency = 4171821 54885220 54885913 11455 12148 NC_060928.1 JAAKGM020000061.1 98.41 True relocation, inconsistency = -4416973 50470112 50471026 13320 14234 NC_060928.1 JAAKGM020000061.1 98.14 True indel: indel (> 5bp) 50471111 50472540 14235 15664 NC_060928.1 JAAKGM020000061.1 96.71 True relocation, inconsistency = 468122 50940790 50941400 15792 16402 NC_060928.1 JAAKGM020000061.1 97.71 True indel: indel (> 5bp) 50941485 50942070 16403 16988 NC_060928.1 JAAKGM020000061.1 97.27 True relocation, inconsistency = 3956449 54899529 54900950 17998 19419 NC_060928.1 JAAKGM020000061.1 97.4 True relocation, inconsistency = -2832048 52070135 52070965 20652 21482 NC_060928.1 JAAKGM020000061.1 97.47 True local misassembly 52071418 52072755 21483 22820 NC_060928.1 JAAKGM020000061.1 97.09 True relocation, inconsistency = 2824872 54900669 54903128 25862 28363 NC_060928.1 JAAKGM020000061.1 95.33 True relocation, inconsistency = -3174418 51728762 51729961 28415 29614 NC_060928.1 JAAKGM020000061.1 97.42 True indel: indel (> 5bp) 51730004 51730978 29615 30589 NC_060928.1 JAAKGM020000061.1 97.33 True relocation, inconsistency = -158784 51572197 51572919 30592 31314 NC_060928.1 JAAKGM020000061.1 99.03 True relocation, inconsistency = -561194 51012178 51012866 31767 32455 NC_060928.1 JAAKGM020000061.1 96.95 True relocation, inconsistency = -543931 50470112 50471026 33632 34546 NC_060928.1 JAAKGM020000061.1 97.6 True indel: indel (> 5bp) 50471111 50472540 34547 35976 NC_060928.1 JAAKGM020000061.1 96.43 True relocation, inconsistency = 358614 50831155 50832003 35977 36825 NC_060928.1 JAAKGM020000061.1 97.23 True CONTIG JAAKGM020000061.1 39571 misassembled 35782608 35783728 1 1121 NC_060936.1 JAAKGM020000062.1 99.11 True relocation, inconsistency = 1012283 36796026 36802572 1136 7689 NC_060936.1 JAAKGM020000062.1 98.23 True relocation, inconsistency = 31230 36834402 36837131 8289 11020 NC_060936.1 JAAKGM020000062.1 98.57 True relocation, inconsistency = -2108233 34728899 34731996 11021 14118 NC_060936.1 JAAKGM020000062.1 98.16 True relocation, inconsistency = 2063767 36796026 36802572 14381 20930 NC_060936.1 JAAKGM020000062.1 98.32 True relocation, inconsistency = -90651 36711922 36713846 20931 22855 NC_060936.1 JAAKGM020000062.1 98.62 True relocation, inconsistency = 82165 36796026 36802572 22870 29423 NC_060936.1 JAAKGM020000062.1 98.23 True relocation, inconsistency = -93024 36711203 36713786 31078 33661 NC_060936.1 JAAKGM020000062.1 98.44 True relocation, inconsistency = -88297 36625490 36628379 33662 36552 NC_060936.1 JAAKGM020000062.1 98.58 True relocation, inconsistency = -203076 36425304 36427392 36553 38637 NC_060936.1 JAAKGM020000062.1 98.28 True CONTIG JAAKGM020000062.1 38675 misassembled 49443469 49445184 1748 32 NC_060929.1 JAAKGM020000063.1 98.31 True local misassembly 49438391 49440143 3769 2017 NC_060929.1 JAAKGM020000063.1 98.4 True indel: stretch of mismatches 49437032 49438334 5128 3826 NC_060929.1 JAAKGM020000063.1 98.39 True relocation, inconsistency = -25132 49457307 49462107 9989 5185 NC_060929.1 JAAKGM020000063.1 98.08 True local misassembly 49456085 49462738 16647 9990 NC_060929.1 JAAKGM020000063.1 97.91 True local misassembly 49456676 49460161 20133 16648 NC_060929.1 JAAKGM020000063.1 97.85 True relocation, inconsistency = 21737 49430881 49434938 24189 20134 NC_060929.1 JAAKGM020000063.1 98.15 True local misassembly 49422807 49424406 25810 24211 NC_060929.1 JAAKGM020000063.1 97.89 True relocation, inconsistency = -39060 49460040 49461866 27641 25811 NC_060929.1 JAAKGM020000063.1 98.12 True local misassembly 49447343 49454263 34566 27642 NC_060929.1 JAAKGM020000063.1 97.91 True CONTIG JAAKGM020000063.1 35997 misassembled 42831521 42832344 315 1138 NC_060934.1 JAAKGM020000064.1 97.54 True relocation, inconsistency = 13729 42846074 42849511 1139 4499 NC_060934.1 JAAKGM020000064.1 96.15 True local misassembly 42846975 42870718 4500 28455 NC_060934.1 JAAKGM020000064.1 95.36 True relocation, inconsistency = -23782 42846975 42861300 28494 42682 NC_060934.1 JAAKGM020000064.1 96.54 True CONTIG JAAKGM020000064.1 42682 misassembled 49457307 49462120 4833 16 NC_060929.1 JAAKGM020000065.1 97.98 True local misassembly 49456085 49462738 11491 4834 NC_060929.1 JAAKGM020000065.1 97.79 True local misassembly 49457307 49461518 15705 11492 NC_060929.1 JAAKGM020000065.1 98.0 True local misassembly 49456085 49462738 22363 15706 NC_060929.1 JAAKGM020000065.1 98.08 True local misassembly 49456085 49461518 27798 22364 NC_060929.1 JAAKGM020000065.1 97.99 True relocation, inconsistency = 2287190 47168154 47168766 28540 27927 NC_060929.1 JAAKGM020000065.1 97.56 True CONTIG JAAKGM020000065.1 28540 misassembled CONTIG JAAKGM020000066.1 24654 unaligned 81135380 81136926 2220 672 NC_060929.1 CM021592.1 96.2 True unknown 135453259 135455430 12501 10330 NC_060929.1 CM021592.1 95.26 True unknown 135452122 135452807 13638 12953 NC_060929.1 CM021592.1 96.5 True unknown CONTIG CM021592.1 16570 mis_unaligned