S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 3697 7469 11057 14829 NC_060925.1 CM039034.1 99.55 True indel: indel (<= 5bp) 7470 8942 14831 16303 NC_060925.1 CM039034.1 99.66 True local misassembly 9512 11669 16874 19031 NC_060925.1 CM039034.1 99.17 True indel: indel (> 5bp) 11729 12565 19032 19868 NC_060925.1 CM039034.1 98.33 True indel: indel (<= 5bp) 12604 15569 19906 22871 NC_060925.1 CM039034.1 98.95 True indel: indel (<= 5bp) 15570 16182 22873 23485 NC_060925.1 CM039034.1 99.18 True indel: indel (> 5bp) 16195 16760 23486 24051 NC_060925.1 CM039034.1 99.12 True indel: indel (<= 5bp) 16764 17296 24052 24584 NC_060925.1 CM039034.1 99.06 True local misassembly 18082 23003 25679 30600 NC_060925.1 CM039034.1 99.11 True indel: indel (> 5bp) 23396 24010 30999 31613 NC_060925.1 CM039034.1 99.35 True indel: indel (<= 5bp) 24112 24616 31711 32215 NC_060925.1 CM039034.1 96.63 True local misassembly 25134 26493 32216 33575 NC_060925.1 CM039034.1 98.46 True indel: indel (<= 5bp) 26872 27951 33957 35036 NC_060925.1 CM039034.1 99.26 True local misassembly 27952 29156 35536 36740 NC_060925.1 CM039034.1 99.59 True indel: indel (> 5bp) 29293 32388 36941 40036 NC_060925.1 CM039034.1 99.64 True indel: indel (> 5bp) 32397 33802 40037 41442 NC_060925.1 CM039034.1 99.08 True indel: indel (<= 5bp) 33808 36631 41443 44266 NC_060925.1 CM039034.1 99.65 True local misassembly 36632 37637 45143 46148 NC_060925.1 CM039034.1 99.2 True local misassembly 37638 43595 46875 52832 NC_060925.1 CM039034.1 99.7 True indel: indel (<= 5bp) 43931 49274 53170 58513 NC_060925.1 CM039034.1 99.57 True indel: indel (<= 5bp) 49279 50116 58514 59351 NC_060925.1 CM039034.1 99.76 True indel: indel (> 5bp) 50117 52115 59360 61358 NC_060925.1 CM039034.1 99.7 True indel: stretch of mismatches 52381 53635 61624 62878 NC_060925.1 CM039034.1 99.92 True indel: indel (<= 5bp) 53640 54658 62879 63897 NC_060925.1 CM039034.1 99.9 True local misassembly 54659 58492 69771 73604 NC_060925.1 CM039034.1 99.66 True indel: indel (<= 5bp) 58502 59560 73612 74670 NC_060925.1 CM039034.1 99.72 True indel: indel (<= 5bp) 59562 63015 74671 78124 NC_060925.1 CM039034.1 99.8 True indel: indel (<= 5bp) 63016 64983 78128 80095 NC_060925.1 CM039034.1 99.85 True indel: indel (<= 5bp) 65002 65977 80115 81090 NC_060925.1 CM039034.1 99.59 True indel: indel (<= 5bp) 65978 67217 81092 82331 NC_060925.1 CM039034.1 99.68 True indel: indel (<= 5bp) 67561 70106 82679 85224 NC_060925.1 CM039034.1 99.84 True indel: indel (<= 5bp) 70107 73450 85227 88570 NC_060925.1 CM039034.1 99.7 True indel: indel (> 5bp) 73465 75084 88571 90190 NC_060925.1 CM039034.1 99.81 True indel: indel (<= 5bp) 75085 82172 90193 97280 NC_060925.1 CM039034.1 99.72 True indel: indel (<= 5bp) 82355 85867 97466 100978 NC_060925.1 CM039034.1 99.49 True indel: indel (<= 5bp) 85868 87599 100980 102711 NC_060925.1 CM039034.1 99.54 True local misassembly 91955 93324 103319 104688 NC_060925.1 CM039034.1 97.59 True local misassembly 96677 97597 105503 106423 NC_060925.1 CM039034.1 98.7 True indel: indel (<= 5bp) 97599 98108 106424 106933 NC_060925.1 CM039034.1 97.25 True indel: indel (<= 5bp) 98531 99959 107358 108786 NC_060925.1 CM039034.1 98.39 True indel: indel (<= 5bp) 100376 101052 109204 109880 NC_060925.1 CM039034.1 98.82 True indel: indel (<= 5bp) 101056 102540 109881 111365 NC_060925.1 CM039034.1 99.06 True indel: indel (<= 5bp) 102541 104375 111368 113202 NC_060925.1 CM039034.1 98.47 True indel: indel (<= 5bp) 104775 105631 113600 114456 NC_060925.1 CM039034.1 99.42 True indel: indel (<= 5bp) 105944 110781 114767 119604 NC_060925.1 CM039034.1 98.99 True indel: indel (<= 5bp) 110782 112498 119609 121325 NC_060925.1 CM039034.1 99.07 True indel: indel (<= 5bp) 112499 113335 121327 122163 NC_060925.1 CM039034.1 99.4 True indel: indel (<= 5bp) 113680 114487 122509 123316 NC_060925.1 CM039034.1 99.5 True indel: indel (<= 5bp) 114488 116313 123318 125143 NC_060925.1 CM039034.1 99.78 True indel: indel (<= 5bp) 116315 137093 125144 145922 NC_060925.1 CM039034.1 99.94 True indel: indel (> 5bp) 137109 138791 145923 147605 NC_060925.1 CM039034.1 100.0 True indel: indel (<= 5bp) 138792 144195 147607 153010 NC_060925.1 CM039034.1 99.96 True indel: indel (<= 5bp) 144197 147169 153011 155983 NC_060925.1 CM039034.1 99.97 True indel: indel (<= 5bp) 147172 151561 155984 160373 NC_060925.1 CM039034.1 99.98 True indel: indel (<= 5bp) 151562 171376 160375 180189 NC_060925.1 CM039034.1 99.91 True indel: indel (> 5bp) 171383 183948 180190 192755 NC_060925.1 CM039034.1 99.94 True indel: indel (<= 5bp) 183949 185988 192757 194796 NC_060925.1 CM039034.1 99.9 True indel: indel (> 5bp) 185996 202377 194797 211178 NC_060925.1 CM039034.1 99.97 True indel: indel (<= 5bp) 202378 216352 211180 225154 NC_060925.1 CM039034.1 99.99 True indel: indel (> 5bp) 216658 717922 225453 732774 NC_060925.1 CM039034.1 98.56 True local misassembly 720085 861892 734823 875678 NC_060925.1 CM039034.1 98.84 True fake: scaffold gap size wrong estimation (local) 862193 1040045 876045 1053948 NC_060925.1 CM039034.1 99.92 True indel: indel (> 5bp) 1040179 1761047 1054042 1775372 NC_060925.1 CM039034.1 99.72 True local misassembly 1764926 1766431 1779372 1780877 NC_060925.1 CM039034.1 99.54 True indel: indel (<= 5bp) 1766788 1771263 1781239 1785714 NC_060925.1 CM039034.1 99.96 True indel: indel (> 5bp) 1771264 1782162 1785749 1796647 NC_060925.1 CM039034.1 99.81 True indel: indel (> 5bp) 1782163 1785124 1796668 1799629 NC_060925.1 CM039034.1 99.63 True indel: indel (> 5bp) 1785246 1788208 1799774 1802736 NC_060925.1 CM039034.1 99.8 True indel: indel (<= 5bp) 1788209 1790534 1802739 1805064 NC_060925.1 CM039034.1 99.74 True indel: indel (<= 5bp) 1790536 1799140 1805065 1813669 NC_060925.1 CM039034.1 99.81 True indel: indel (<= 5bp) 1799141 1803023 1813672 1817554 NC_060925.1 CM039034.1 99.9 True indel: stretch of mismatches 1803096 1806578 1817627 1821109 NC_060925.1 CM039034.1 99.83 True indel: indel (<= 5bp) 1806579 1840796 1821111 1855328 NC_060925.1 CM039034.1 99.97 True indel: indel (> 5bp) 1840803 1854566 1855329 1869092 NC_060925.1 CM039034.1 99.99 True indel: indel (<= 5bp) 1854567 1855986 1869095 1870514 NC_060925.1 CM039034.1 99.65 True indel: indel (<= 5bp) 1855992 1857013 1870515 1871536 NC_060925.1 CM039034.1 100.0 True indel: indel (> 5bp) 1857022 1859563 1871537 1874078 NC_060925.1 CM039034.1 100.0 True indel: indel (<= 5bp) 1859564 1863898 1874080 1878414 NC_060925.1 CM039034.1 99.93 True indel: indel (<= 5bp) 1863899 1870929 1878416 1885446 NC_060925.1 CM039034.1 99.83 True indel: indel (<= 5bp) 1870932 1874577 1885447 1889092 NC_060925.1 CM039034.1 99.86 True indel: indel (<= 5bp) 1874578 1875627 1889094 1890143 NC_060925.1 CM039034.1 99.9 True local misassembly 1876089 1878786 1890663 1893360 NC_060925.1 CM039034.1 99.78 True indel: indel (<= 5bp) 1878787 1879984 1893362 1894559 NC_060925.1 CM039034.1 100.0 True local misassembly 1881837 1885735 1896138 1900036 NC_060925.1 CM039034.1 99.69 True indel: indel (<= 5bp) 1885737 1890699 1900037 1904999 NC_060925.1 CM039034.1 99.94 True indel: indel (<= 5bp) 1890700 1891879 1905004 1906183 NC_060925.1 CM039034.1 99.75 True local misassembly 1891994 1900744 1906184 1914934 NC_060925.1 CM039034.1 99.79 True local misassembly 1900745 1902989 1915031 1917275 NC_060925.1 CM039034.1 99.69 True indel: indel (<= 5bp) 1902991 1908561 1917276 1922846 NC_060925.1 CM039034.1 99.77 True indel: indel (> 5bp) 1908562 1915506 1922856 1929800 NC_060925.1 CM039034.1 99.87 True indel: indel (<= 5bp) 1915507 1924862 1929802 1939157 NC_060925.1 CM039034.1 99.96 True indel: indel (> 5bp) 1924966 1926312 1939282 1940628 NC_060925.1 CM039034.1 99.93 True indel: indel (> 5bp) 1926324 1939747 1940629 1954052 NC_060925.1 CM039034.1 99.96 True indel: indel (> 5bp) 1939757 1990451 1954053 2004747 NC_060925.1 CM039034.1 99.99 True indel: indel (<= 5bp) 1990452 2020914 2004749 2035211 NC_060925.1 CM039034.1 99.98 True indel: indel (<= 5bp) 2020917 2033866 2035212 2048161 NC_060925.1 CM039034.1 99.98 True indel: indel (<= 5bp) 2033867 2050543 2048163 2064839 NC_060925.1 CM039034.1 99.98 True indel: indel (> 5bp) 2050686 2061302 2064968 2075584 NC_060925.1 CM039034.1 99.99 True indel: indel (<= 5bp) 2061304 2072234 2075585 2086515 NC_060925.1 CM039034.1 99.99 True indel: stretch of mismatches 2072426 2076388 2086707 2090669 NC_060925.1 CM039034.1 99.95 True local misassembly 2076389 2089249 2091139 2103999 NC_060925.1 CM039034.1 99.94 True indel: indel (<= 5bp) 2089250 2093559 2104001 2108310 NC_060925.1 CM039034.1 99.98 True indel: indel (<= 5bp) 2093560 2095600 2108316 2110356 NC_060925.1 CM039034.1 99.71 True local misassembly 2095601 2096141 2115454 2115994 NC_060925.1 CM039034.1 99.45 True indel: indel (> 5bp) 2096182 2100539 2115995 2120352 NC_060925.1 CM039034.1 99.61 True local misassembly 2100540 2109055 2125449 2133964 NC_060925.1 CM039034.1 99.62 True local misassembly 2110220 2120068 2133965 2143813 NC_060925.1 CM039034.1 99.72 True indel: indel (<= 5bp) 2120070 2122837 2143814 2146581 NC_060925.1 CM039034.1 99.6 True indel: indel (<= 5bp) 2122839 2124612 2146582 2148355 NC_060925.1 CM039034.1 99.66 True relocation, inconsistency = -17969 2134766 2146013 2176478 2187725 NC_060925.1 CM039034.1 99.65 True indel: indel (> 5bp) 2146047 2149540 2187726 2191219 NC_060925.1 CM039034.1 99.74 True indel: indel (> 5bp) 2149541 2150496 2191259 2192214 NC_060925.1 CM039034.1 99.79 True indel: indel (> 5bp) 2150538 2152841 2192215 2194518 NC_060925.1 CM039034.1 99.78 True relocation, inconsistency = -9952 2164253 2164961 2215882 2216590 NC_060925.1 CM039034.1 95.91 True local misassembly 2165892 2166896 2218605 2219609 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = -35080 2198957 2200546 2286750 2288339 NC_060925.1 CM039034.1 99.75 True local misassembly 2201992 2202971 2288340 2289319 NC_060925.1 CM039034.1 99.8 True local misassembly 2202972 2207635 2292008 2296671 NC_060925.1 CM039034.1 99.57 True indel: indel (> 5bp) 2207636 2210791 2296753 2299908 NC_060925.1 CM039034.1 99.37 True local misassembly 2210792 2214663 2301314 2305185 NC_060925.1 CM039034.1 99.64 True indel: indel (> 5bp) 2214705 2215294 2305186 2305775 NC_060925.1 CM039034.1 99.49 True indel: indel (> 5bp) 2215295 2216416 2305786 2306907 NC_060925.1 CM039034.1 99.47 True relocation, inconsistency = -13850 2226185 2242458 2330526 2346959 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -11438 2249009 2251653 2364948 2367633 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -7215 2261143 2359996 2384338 2482595 NC_060925.1 CM039034.1 98.36 True local misassembly 2360450 2684346 2482928 2805981 NC_060925.1 CM039034.1 99.22 True local misassembly 2684768 2982422 2807039 3104146 NC_060925.1 CM039034.1 99.34 True local misassembly 2982655 3576299 3104802 3697208 NC_060925.1 CM039034.1 98.71 True local misassembly 3578279 3588313 3700241 3710249 NC_060925.1 CM039034.1 99.25 True indel: indel (> 5bp) 3588781 4676744 3710737 4799378 NC_060925.1 CM039034.1 99.54 True indel: indel (> 5bp) 4676816 5045746 4799424 5167888 NC_060925.1 CM039034.1 99.41 True indel: stretch of mismatches 5045853 5530786 5167995 5653044 NC_060925.1 CM039034.1 99.82 True local misassembly 5531680 5532212 5653337 5653869 NC_060925.1 CM039034.1 99.62 True local misassembly 5532361 6468958 5654720 6591514 NC_060925.1 CM039034.1 99.8 True local misassembly 6469397 7334404 6591762 7455861 NC_060925.1 CM039034.1 99.67 True local misassembly 7334480 8915058 7456121 9036874 NC_060925.1 CM039034.1 99.76 True indel: indel (<= 5bp) 8915185 9731272 9037004 9852977 NC_060925.1 CM039034.1 99.91 True indel: indel (> 5bp) 9731787 10465446 9853432 10586918 NC_060925.1 CM039034.1 99.86 True local misassembly 10465435 12573420 10591472 12700018 NC_060925.1 CM039034.1 99.7 True local misassembly 12575568 13551984 12700019 13676533 NC_060925.1 CM039034.1 99.73 True local misassembly 13554616 16010474 13677312 16135562 NC_060925.1 CM039034.1 99.61 True relocation, inconsistency = 620200 16630675 16649571 16154461 16135563 NC_060925.1 CM039034.1 98.64 True indel: indel (<= 5bp) 16627098 16630277 16158042 16154863 NC_060925.1 CM039034.1 98.9 True indel: indel (<= 5bp) 16626415 16626932 16158721 16158204 NC_060925.1 CM039034.1 98.26 True indel: indel (<= 5bp) 16593752 16626327 16191409 16158808 NC_060925.1 CM039034.1 99.28 True relocation, inconsistency = -166420 16672696 16760171 16278909 16191410 NC_060925.1 CM039034.1 99.15 True relocation, inconsistency = 229435 16396441 16443260 16325702 16278910 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = 128725964 145169226 145177640 16325704 16334120 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 128509258 16630674 16659967 16363415 16334121 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 243306 16213978 16378056 16363808 16527830 NC_060925.1 CM039034.1 99.18 True relocation, inconsistency = -164078 16213979 16467933 16781781 16527831 NC_060925.1 CM039034.1 99.28 True relocation, inconsistency = 165368 16015456 16048610 16814980 16781782 NC_060925.1 CM039034.1 99.21 True relocation, inconsistency = -143375 16153176 16158830 16820642 16814981 NC_060925.1 CM039034.1 99.35 True relocation, inconsistency = -131655408 147801297 147808583 16827935 16820643 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 131400615 16397066 16398674 16829943 16831551 NC_060925.1 CM039034.1 98.14 True local misassembly 16402054 16403039 16831712 16832697 NC_060925.1 CM039034.1 99.39 True indel: indel (<= 5bp) 16403040 16403573 16832699 16833232 NC_060925.1 CM039034.1 98.5 True indel: indel (<= 5bp) 16403575 16404638 16833233 16834296 NC_060925.1 CM039034.1 99.44 True indel: indel (<= 5bp) 16405127 16405740 16834782 16835395 NC_060925.1 CM039034.1 99.67 True indel: indel (<= 5bp) 16405742 16408062 16835396 16837716 NC_060925.1 CM039034.1 99.78 True local misassembly 16408743 16414650 16838394 16844301 NC_060925.1 CM039034.1 99.58 True indel: indel (<= 5bp) 16415143 16416301 16844799 16845957 NC_060925.1 CM039034.1 99.4 True indel: indel (<= 5bp) 16416302 16417000 16845960 16846658 NC_060925.1 CM039034.1 100.0 True indel: indel (> 5bp) 16417001 16421073 16846697 16850769 NC_060925.1 CM039034.1 99.39 True indel: indel (<= 5bp) 16421541 16431962 16851239 16861660 NC_060925.1 CM039034.1 99.76 True indel: indel (<= 5bp) 16432011 16432604 16861711 16862304 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 16432605 16437499 16862306 16867200 NC_060925.1 CM039034.1 99.57 True indel: stretch of mismatches 16437994 16439637 16867695 16869338 NC_060925.1 CM039034.1 99.33 True indel: stretch of mismatches 16440126 16442966 16869827 16872667 NC_060925.1 CM039034.1 99.61 True indel: indel (<= 5bp) 16442968 16443938 16872668 16873638 NC_060925.1 CM039034.1 99.38 True indel: indel (<= 5bp) 16443941 16447822 16873639 16877520 NC_060925.1 CM039034.1 99.38 True indel: indel (<= 5bp) 16447826 16449142 16877521 16878837 NC_060925.1 CM039034.1 98.25 True indel: indel (> 5bp) 16449143 16450261 16878858 16879976 NC_060925.1 CM039034.1 98.21 True indel: stretch of mismatches 16450280 16451678 16879995 16881393 NC_060925.1 CM039034.1 99.0 True relocation, inconsistency = 7339 16459018 16461486 16881394 16883862 NC_060925.1 CM039034.1 98.78 True indel: indel (<= 5bp) 16461488 16462734 16883863 16885109 NC_060925.1 CM039034.1 99.44 True indel: indel (<= 5bp) 16462751 16463268 16885124 16885641 NC_060925.1 CM039034.1 99.81 True indel: indel (> 5bp) 16463284 16465234 16885642 16887592 NC_060925.1 CM039034.1 98.87 True indel: indel (> 5bp) 16465235 16466573 16887601 16888939 NC_060925.1 CM039034.1 99.1 True indel: indel (<= 5bp) 16466574 16467886 16888943 16890255 NC_060925.1 CM039034.1 99.26 True relocation, inconsistency = 88152 16556039 16654039 16890256 16988266 NC_060925.1 CM039034.1 99.25 True relocation, inconsistency = 531182 16010740 16024856 17002350 16988267 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 624449 16649306 18322914 17002351 18675722 NC_060925.1 CM039034.1 99.75 True indel: indel (> 5bp) 18323049 20538770 18675896 20893411 NC_060925.1 CM039034.1 99.72 True local misassembly 20539011 26237471 20893476 26596252 NC_060925.1 CM039034.1 99.68 True local misassembly 26237907 30248998 26596563 30607430 NC_060925.1 CM039034.1 99.79 True local misassembly 30254494 30504852 30607733 30858996 NC_060925.1 CM039034.1 98.98 True local misassembly 30505676 31285013 30859880 31638997 NC_060925.1 CM039034.1 99.74 True local misassembly 31288679 31352020 31642177 31705196 NC_060925.1 CM039034.1 99.36 True local misassembly 31352602 35019801 31705578 35373081 NC_060925.1 CM039034.1 99.85 True local misassembly 35019428 36130575 35373837 36484541 NC_060925.1 CM039034.1 99.83 True local misassembly 36130908 38092412 36484645 38443821 NC_060925.1 CM039034.1 99.57 True indel: indel (> 5bp) 38092576 43463857 38443919 43818754 NC_060925.1 CM039034.1 99.66 True fake: not a misassembly (possible transposable element) 43463860 43464433 43819344 43818771 NC_060925.1 CM039034.1 100.0 True fake: not a misassembly (possible transposable element) 43464678 58396226 43819443 58757031 NC_060925.1 CM039034.1 99.76 True indel: indel (> 5bp) 58396319 63275880 58757153 63632105 NC_060925.1 CM039034.1 99.62 True indel: indel (> 5bp) 63276020 71806180 63632189 72161194 NC_060925.1 CM039034.1 99.78 True local misassembly 71806969 72179592 72161419 72534091 NC_060925.1 CM039034.1 99.89 True relocation, inconsistency = -54985 72179592 75220399 72589076 75629535 NC_060925.1 CM039034.1 99.84 True translocation 19315036 19317563 75629536 75632063 NC_060946.1 CM039034.1 98.8 True local misassembly 19320370 19322276 75632064 75633970 NC_060946.1 CM039034.1 99.1 True translocation 75219430 77205760 75633971 77620659 NC_060925.1 CM039034.1 99.68 True indel: indel (> 5bp) 77205783 77311230 77620712 77726056 NC_060925.1 CM039034.1 99.71 True local misassembly 77311808 82500693 77726061 82916523 NC_060925.1 CM039034.1 99.81 True local misassembly 82502305 86825966 82916524 87234116 NC_060925.1 CM039034.1 99.62 True indel: indel (> 5bp) 86826153 89640998 87234274 90045868 NC_060925.1 CM039034.1 99.76 True local misassembly 89641289 91012844 90046010 91417295 NC_060925.1 CM039034.1 99.79 True local misassembly 91013875 92691929 91418218 93096155 NC_060925.1 CM039034.1 99.79 True indel: indel (> 5bp) 92692127 99531189 93096424 99933154 NC_060925.1 CM039034.1 99.83 True indel: indel (> 5bp) 99531287 103609595 99933235 104018272 NC_060925.1 CM039034.1 99.67 True relocation, inconsistency = 188269 103797865 105007868 104018273 105227203 NC_060925.1 CM039034.1 99.72 True indel: indel (> 5bp) 105008188 105166670 105227540 105385975 NC_060925.1 CM039034.1 99.73 True local misassembly 105167583 106468675 105386013 106694523 NC_060925.1 CM039034.1 99.3 True local misassembly 106468700 108060613 106694850 108286802 NC_060925.1 CM039034.1 99.83 True indel: indel (> 5bp) 108061096 108516689 108287259 108743253 NC_060925.1 CM039034.1 99.62 True local misassembly 108516787 109713622 108743724 109945006 NC_060925.1 CM039034.1 99.49 True local misassembly 109719626 109722067 109945007 109947464 NC_060925.1 CM039034.1 96.69 True local misassembly 109722642 109723342 109948031 109948733 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -24457 109702352 109704746 109952200 109954594 NC_060925.1 CM039034.1 98.71 True indel: stretch of mismatches 109705174 109705896 109955022 109955757 NC_060925.1 CM039034.1 95.52 True local misassembly 109708445 113012252 109958290 113262375 NC_060925.1 CM039034.1 99.8 True local misassembly 113014089 113427443 113262376 113677891 NC_060925.1 CM039034.1 99.13 True indel: indel (> 5bp) 113427844 117438759 113678268 117685010 NC_060925.1 CM039034.1 99.61 True indel: indel (> 5bp) 117439078 118328613 117685343 118574467 NC_060925.1 CM039034.1 99.8 True local misassembly 118328719 120336348 118574474 120581799 NC_060925.1 CM039034.1 99.78 True relocation, inconsistency = 119711 120459686 120588838 120710540 120581800 NC_060925.1 CM039034.1 99.44 True relocation, inconsistency = 25147436 145736275 145922811 120710541 120897306 NC_060925.1 CM039034.1 98.69 True relocation, scaffold gap is present, inconsistency = -25287097 120635728 120828630 120897320 121090293 NC_060925.1 CM039034.1 99.63 True relocation, inconsistency = 25367696 146196327 146215998 121090294 121110000 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 1757783 144429176 144435609 121119345 121112935 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 23590429 120837262 120838746 121119346 121120827 NC_060925.1 CM039034.1 97.76 True local misassembly 120843405 121626327 121125486 121908182 NC_060925.1 CM039034.1 99.76 True local misassembly 121633695 121634408 121909662 121910375 NC_060925.1 CM039034.1 99.86 True local misassembly 121634945 121636176 121910376 121911607 NC_060925.1 CM039034.1 97.4 True indel: indel (<= 5bp) 121636177 121637291 121911609 121912723 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -9629 121627948 121630332 121913009 121915393 NC_060925.1 CM039034.1 98.66 True local misassembly 121630869 121631790 121915394 121916315 NC_060925.1 CM039034.1 99.13 True relocation, inconsistency = 8294 121640353 121642912 121916584 121919143 NC_060925.1 CM039034.1 96.17 True local misassembly 121643181 121644355 121919144 121920318 NC_060925.1 CM039034.1 96.68 True indel: indel (<= 5bp) 121644356 121645195 121920322 121921161 NC_060925.1 CM039034.1 97.02 True indel: indel (<= 5bp) 121645196 121647181 121921165 121923150 NC_060925.1 CM039034.1 96.68 True local misassembly 121647588 121648645 121923151 121924208 NC_060925.1 CM039034.1 96.12 True indel: indel (<= 5bp) 121648765 121649455 121924324 121925014 NC_060925.1 CM039034.1 95.08 True relocation, inconsistency = -8680 121641044 121642218 121925283 121926457 NC_060925.1 CM039034.1 96.43 True indel: indel (<= 5bp) 121642222 121651983 121926458 121936219 NC_060925.1 CM039034.1 99.03 True indel: indel (<= 5bp) 121651984 121652494 121936221 121936731 NC_060925.1 CM039034.1 97.26 True indel: indel (<= 5bp) 121652498 121655720 121936732 121939954 NC_060925.1 CM039034.1 97.21 True indel: indel (<= 5bp) 121655722 121658437 121939955 121942670 NC_060925.1 CM039034.1 97.75 True indel: indel (<= 5bp) 121658438 121659555 121942672 121943789 NC_060925.1 CM039034.1 98.3 True local misassembly 121660653 121667027 121944891 121951265 NC_060925.1 CM039034.1 96.96 True indel: indel (<= 5bp) 121667263 121672109 121951502 121956357 NC_060925.1 CM039034.1 96.93 True indel: stretch of mismatches 121672398 121675676 121956646 121959927 NC_060925.1 CM039034.1 96.4 True local misassembly 121676187 121716111 121960438 122000029 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = -48840 121667272 121793991 122000030 122126103 NC_060925.1 CM039034.1 97.27 True local misassembly 121794840 121797955 122126104 122129219 NC_060925.1 CM039034.1 98.77 True local misassembly 121798435 121799677 122130039 122131281 NC_060925.1 CM039034.1 97.18 True indel: indel (<= 5bp) 121799890 121800473 122131490 122132073 NC_060925.1 CM039034.1 95.72 True local misassembly 121800813 121802489 122132074 122133750 NC_060925.1 CM039034.1 97.2 True indel: indel (<= 5bp) 121802491 121803126 122133751 122134386 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 27153 121836646 121837755 122140753 122141862 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -35649 121802247 121803134 122142003 122142889 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 24773 121830533 121831650 122145515 122146632 NC_060925.1 CM039034.1 97.32 True fake: not a misassembly (possible transposable element) 26788296 26788912 122146902 122147517 NC_060943.1 CM039034.1 96.6 True fake: not a misassembly (possible transposable element) 121827322 121829392 122148080 122150148 NC_060925.1 CM039034.1 97.73 True local misassembly 121827322 121828283 122150458 122151419 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 9850 121838134 121840351 122151420 122153637 NC_060925.1 CM039034.1 98.33 True local misassembly 121846468 121847723 122153638 122154893 NC_060925.1 CM039034.1 98.15 True local misassembly 121849255 121851375 122155145 122157265 NC_060925.1 CM039034.1 98.3 True local misassembly 121852819 121853978 122157694 122158852 NC_060925.1 CM039034.1 97.5 True local misassembly 121854939 121856797 122159818 122161676 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 4002352 125862602 125863706 122165129 122166233 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -3943608 121921143 121922698 122167278 122168833 NC_060925.1 CM039034.1 98.97 True relocation, inconsistency = -72566 121850137 121851685 122168838 122170386 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 312979 122165038 122167266 122170760 122172988 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 4056824 126224091 126226019 122172989 122174915 NC_060925.1 CM039034.1 96.93 True translocation 28770463 28771803 122174916 122176255 NC_060943.1 CM039034.1 96.68 True translocation 122176591 122177114 122176869 122177391 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 3683403 125862712 125864252 122179586 122181127 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 101929 125968409 125969209 122183355 122184156 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -3859426 122110989 122114556 122185362 122188931 NC_060925.1 CM039034.1 97.79 True fake: not a misassembly (possible transposable element) 125965827 125967349 122188932 122190454 NC_060925.1 CM039034.1 97.95 True fake: not a misassembly (possible transposable element) 122110989 122114556 122191821 122195390 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 3812552 125929327 125931100 122197609 122199382 NC_060925.1 CM039034.1 97.75 True translocation 29569467 29570486 122199383 122200402 NC_060943.1 CM039034.1 96.43 True translocation 121954554 121955983 122204752 122206184 NC_060925.1 CM039034.1 97.35 True translocation 29480088 29480798 122208590 122209300 NC_060943.1 CM039034.1 96.56 True translocation 126294046 126295501 122209301 122210756 NC_060925.1 CM039034.1 97.12 True translocation 28391931 28392456 122210757 122211281 NC_060943.1 CM039034.1 97.51 True translocation 125914250 125917867 122212431 122216049 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -3840831 122080669 122082791 122219682 122221804 NC_060925.1 CM039034.1 98.02 True fake: not a misassembly (possible transposable element) 122275498 122277712 122223760 122225974 NC_060925.1 CM039034.1 96.89 True fake: not a misassembly (possible transposable element) 122087855 122090516 122228909 122231570 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -12570 122080669 122082791 122234293 122236415 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 190751 122275498 122277712 122238371 122240585 NC_060925.1 CM039034.1 96.89 True translocation 29239216 29240178 122243502 122244464 NC_060943.1 CM039034.1 97.61 True translocation 121965115 121965653 122244465 122245003 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 150950 122116813 122118472 122245213 122246871 NC_060925.1 CM039034.1 98.91 True relocation, inconsistency = -51042 122067431 122069206 122246872 122248647 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 29555 122098762 122100082 122248648 122249968 NC_060925.1 CM039034.1 97.37 True local misassembly 122100083 122100903 122250309 122251129 NC_060925.1 CM039034.1 99.27 True indel: indel (<= 5bp) 122100905 122101742 122251130 122251967 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = -34312 122067431 122069206 122251968 122253743 NC_060925.1 CM039034.1 98.99 True translocation 29232139 29232780 122253744 122254384 NC_060943.1 CM039034.1 97.51 True translocation 124317708 124319550 122256227 122254385 NC_060925.1 CM039034.1 97.02 True indel: indel (<= 5bp) 124316821 124317366 122257112 122256567 NC_060925.1 CM039034.1 98.17 True local misassembly 124314988 124316480 122258605 122257113 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 2356974 121953819 121955315 122258720 122260216 NC_060925.1 CM039034.1 98.36 True fake: not a misassembly (possible transposable element) 122107616 122113179 122260217 122265780 NC_060925.1 CM039034.1 97.07 True fake: not a misassembly (possible transposable element) 121966165 121967333 122266238 122267406 NC_060925.1 CM039034.1 99.15 True local misassembly 121964797 121967538 122267407 122270148 NC_060925.1 CM039034.1 99.2 True local misassembly 121967539 121969111 122270489 122272061 NC_060925.1 CM039034.1 98.47 True local misassembly 121969452 121970689 122272062 122273299 NC_060925.1 CM039034.1 96.93 True local misassembly 121971109 121972662 122273300 122274853 NC_060925.1 CM039034.1 98.58 True local misassembly 121968008 121970689 122275194 122277875 NC_060925.1 CM039034.1 97.8 True local misassembly 121971109 121972662 122277876 122279429 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 133065 122106751 122109974 122280453 122283676 NC_060925.1 CM039034.1 98.23 True translocation 27245572 27246582 122284616 122285625 NC_060943.1 CM039034.1 96.64 True local misassembly 27245572 27246582 122286314 122287324 NC_060943.1 CM039034.1 96.64 True local misassembly 27245572 27246582 122288013 122289023 NC_060943.1 CM039034.1 96.83 True translocation 122042295 122044537 122291747 122293990 NC_060925.1 CM039034.1 97.24 True local misassembly 122042499 122048101 122293991 122299595 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -89130 121959146 121962162 122299770 122302785 NC_060925.1 CM039034.1 98.28 True local misassembly 121966278 121967605 122303084 122304411 NC_060925.1 CM039034.1 98.72 True local misassembly 121967946 121968493 122304412 122304959 NC_060925.1 CM039034.1 98.72 True indel: indel (<= 5bp) 121968495 121969383 122304960 122305848 NC_060925.1 CM039034.1 99.1 True local misassembly 121969724 121970689 122305849 122306814 NC_060925.1 CM039034.1 98.45 True local misassembly 121971109 121971988 122306815 122307694 NC_060925.1 CM039034.1 99.26 True local misassembly 121969452 121972730 122307695 122310973 NC_060925.1 CM039034.1 98.48 True local misassembly 121969854 121970490 122310974 122311610 NC_060925.1 CM039034.1 98.45 True indel: indel (> 5bp) 121970838 121972193 122311879 122313234 NC_060925.1 CM039034.1 99.12 True local misassembly 121968399 121969383 122314016 122315000 NC_060925.1 CM039034.1 98.38 True local misassembly 121969724 121970504 122315001 122315781 NC_060925.1 CM039034.1 98.59 True local misassembly 121970924 121971996 122315782 122316854 NC_060925.1 CM039034.1 99.16 True local misassembly 121968216 121969383 122317386 122318553 NC_060925.1 CM039034.1 98.97 True local misassembly 121969724 121970812 122318554 122319642 NC_060925.1 CM039034.1 99.08 True local misassembly 121970924 121972193 122320354 122321623 NC_060925.1 CM039034.1 98.98 True local misassembly 121972194 121973012 122321964 122322782 NC_060925.1 CM039034.1 99.27 True fake: not a misassembly (possible transposable element) 122079235 122082452 122322783 122325998 NC_060925.1 CM039034.1 97.67 True fake: not a misassembly (possible transposable element) 121974191 121974781 122325999 122326589 NC_060925.1 CM039034.1 98.37 True indel: indel (<= 5bp) 121974783 121977985 122326590 122329792 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 106904 122085765 122089872 122330668 122334773 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -133618 121958391 121962237 122336910 122340756 NC_060925.1 CM039034.1 98.0 True local misassembly 121968173 121969120 122340757 122341704 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 113596 122082717 122086527 122341705 122345517 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 41877 122128405 122129884 122345518 122346997 NC_060925.1 CM039034.1 99.47 True local misassembly 122129885 122130696 122347338 122348149 NC_060925.1 CM039034.1 98.41 True local misassembly 122125521 122129341 122348150 122351970 NC_060925.1 CM039034.1 99.32 True local misassembly 122129955 122131285 122352664 122353994 NC_060925.1 CM039034.1 99.17 True local misassembly 122131626 122132735 122353995 122355104 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = -48411 122084325 122085771 122355105 122356552 NC_060925.1 CM039034.1 98.0 True local misassembly 122087469 122090516 122356553 122359600 NC_060925.1 CM039034.1 99.11 True relocation, inconsistency = 19792 122111329 122114077 122360621 122363369 NC_060925.1 CM039034.1 98.65 True local misassembly 122114418 122115607 122363370 122364559 NC_060925.1 CM039034.1 99.33 True indel: indel (<= 5bp) 122115609 122116834 122364560 122365785 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = -81008 122036237 122039917 122366196 122369875 NC_060925.1 CM039034.1 97.47 True fake: not a misassembly (possible transposable element) 121971232 121973009 122369876 122371653 NC_060925.1 CM039034.1 98.17 True fake: not a misassembly (possible transposable element) 122036237 122039436 122371791 122374989 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 88744 122128181 122130182 122374990 122376991 NC_060925.1 CM039034.1 99.4 True local misassembly 122126302 122129341 122377529 122380568 NC_060925.1 CM039034.1 99.44 True fake: not a misassembly (possible transposable element) 122084329 122086123 122380569 122382365 NC_060925.1 CM039034.1 98.37 True fake: not a misassembly (possible transposable element) 122126302 122128918 122382366 122384982 NC_060925.1 CM039034.1 99.54 True fake: not a misassembly (possible transposable element) 122084325 122086527 122385402 122387606 NC_060925.1 CM039034.1 98.28 True fake: not a misassembly (possible transposable element) 122131123 122131802 122387607 122388286 NC_060925.1 CM039034.1 98.81 True fake: not a misassembly (possible transposable element) 122084325 122086527 122388540 122390744 NC_060925.1 CM039034.1 98.1 True fake: not a misassembly (possible transposable element) 122128405 122129884 122390745 122392224 NC_060925.1 CM039034.1 99.52 True local misassembly 122129885 122130700 122392565 122393380 NC_060925.1 CM039034.1 98.16 True local misassembly 122131752 122133577 122394511 122396335 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = -7477 122126302 122129341 122396537 122399576 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = -19110 122110232 122110747 122399577 122400092 NC_060925.1 CM039034.1 98.37 True indel: indel (<= 5bp) 122111009 122112351 122400355 122401697 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -109884 122002468 122006743 122401698 122405972 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -142453 121864291 121865109 122405973 122406791 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 4025128 125890238 125892712 122406792 122409265 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 1638375 124250745 124251425 122410383 122409703 NC_060925.1 CM039034.1 97.8 True translocation 26339887 26342384 122410448 122412944 NC_060943.1 CM039034.1 96.0 True translocation 122163380 122164843 122413638 122415097 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 24475 122189319 122192883 122415098 122418662 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 3731988 125925630 125929500 122419421 122423291 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -3747624 122182902 122183693 122424317 122425108 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -19377 122165033 122169445 122425825 122430235 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 3739134 125909266 125913883 122430922 122435539 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -3731052 122184262 122185052 122436970 122437760 NC_060925.1 CM039034.1 97.22 True indel: indel (<= 5bp) 122185283 122186074 122437988 122438779 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -21758 122165033 122169445 122439496 122443906 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 2029448 124201953 124203402 122448414 122446966 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -72693 124271672 124273370 122451388 122449690 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 1993000 126266371 126269428 122451389 122454448 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -4159198 122110231 122110747 122454449 122454965 NC_060925.1 CM039034.1 98.17 True indel: indel (<= 5bp) 122111009 122113114 122455228 122457333 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -109884 122003231 122004408 122457334 122458511 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 4001784 126006193 126009419 122458512 122461739 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -3836495 122173340 122174569 122462155 122463384 NC_060925.1 CM039034.1 98.05 True fake: not a misassembly (possible transposable element) 122025771 122029121 122464595 122467945 NC_060925.1 CM039034.1 97.73 True fake: not a misassembly (possible transposable element) 122174369 122175040 122467946 122468617 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -19027 122160999 122161717 122473603 122474320 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 32635 122197379 122199216 122477347 122479180 NC_060925.1 CM039034.1 98.04 True local misassembly 122195000 122197176 122479379 122481555 NC_060925.1 CM039034.1 98.39 True indel: indel (<= 5bp) 122197178 122197872 122481556 122482250 NC_060925.1 CM039034.1 98.13 True local misassembly 122202732 122204294 122482346 122483908 NC_060925.1 CM039034.1 97.38 True local misassembly 122204468 122206161 122484421 122486114 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = -315217 121890945 121894045 122486115 122489219 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 328478 122222524 122225658 122489220 122492353 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -200999 122024660 122029121 122492354 122496815 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -53836 121975286 121976911 122496816 122498442 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 3932440 125909352 125913003 122498443 122502094 NC_060925.1 CM039034.1 97.89 True local misassembly 125909266 125913737 122502095 122506565 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -3932783 121981920 121982599 122507531 122508210 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 4101983 126084583 126085600 122508211 122509229 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -175995 125909606 125911875 122509230 122511499 NC_060925.1 CM039034.1 98.06 True indel: indel (<= 5bp) 125911877 125913481 122511500 122513104 NC_060925.1 CM039034.1 98.26 True local misassembly 125913822 125914790 122513105 122514073 NC_060925.1 CM039034.1 98.76 True local misassembly 125913344 125920694 122515685 122523033 NC_060925.1 CM039034.1 97.92 True local misassembly 125914577 125919461 122523034 122527912 NC_060925.1 CM039034.1 98.0 True local misassembly 125913344 125920694 122527913 122535260 NC_060925.1 CM039034.1 98.05 True local misassembly 125914577 125915382 122535261 122536062 NC_060925.1 CM039034.1 98.01 True local misassembly 125913344 125923313 122536063 122546368 NC_060925.1 CM039034.1 95.01 True relocation, inconsistency = -3780947 122142865 122145807 122546867 122549809 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 3825104 125970912 125973557 122549810 122552454 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 818568 125151411 125152343 122553385 122552455 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 832335 125984679 125985872 122553386 122554581 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = 1729837 124250578 124251614 122558845 122557809 NC_060925.1 CM039034.1 98.75 True local misassembly 124249236 124250237 122559847 122558846 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 1746971 125997209 125998567 122559848 122561206 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -3914501 122084067 122086527 122561207 122563670 NC_060925.1 CM039034.1 97.48 True translocation 25997882 25999708 122564301 122566126 NC_060943.1 CM039034.1 97.04 True translocation 124251230 124252295 122568729 122567663 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 2091478 122157599 122159751 122568730 122570879 NC_060925.1 CM039034.1 97.03 True translocation 29563951 29566141 122571068 122573258 NC_060943.1 CM039034.1 95.67 True translocation 125909606 125913737 122576158 122580288 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = -3817386 122096352 122098172 122580289 122582109 NC_060925.1 CM039034.1 98.15 True translocation 29660496 29661813 122582316 122583632 NC_060943.1 CM039034.1 96.65 True translocation 122268364 122271845 122583633 122587114 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 3644302 125916353 125919455 122587320 122590422 NC_060925.1 CM039034.1 98.23 True indel: indel (<= 5bp) 125919457 125920158 122590423 122591124 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -3648720 122271439 122272980 122591125 122592666 NC_060925.1 CM039034.1 97.86 True local misassembly 122268364 122272440 122593486 122597562 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 3643962 125916403 125917421 122597563 122598581 NC_060925.1 CM039034.1 97.9 True local misassembly 125913344 125920694 122598582 122605931 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 1647664 124264874 124265679 122606737 122605932 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -904212 125167045 125169085 122608777 122606738 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 3151582 122011296 122013333 122608778 122610815 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 3900010 125913344 125920694 122610816 122618165 NC_060925.1 CM039034.1 97.91 True local misassembly 125916616 125919885 122618166 122621433 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 1747934 124165532 124168078 122624584 122622037 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 2045130 126213247 126214816 122624623 122626192 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1953898 124257991 124258753 122627550 122626788 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 1666569 125925630 125926827 122627858 122629055 NC_060925.1 CM039034.1 99.17 True local misassembly 125927168 125928292 122629056 122630180 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 1669770 124252552 124257393 122635025 122630185 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 1603702 125861096 125862031 122635026 122635960 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = -3777965 122084067 122086527 122635961 122638424 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 2169362 124257020 124257649 122639054 122638425 NC_060925.1 CM039034.1 98.31 True translocation 25997882 25999708 122639055 122640880 NC_060943.1 CM039034.1 96.99 True translocation 124244770 124245836 122643483 122642417 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 2085018 122157599 122159751 122643484 122645633 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 2090821 124250753 124252295 122647357 122645814 NC_060925.1 CM039034.1 97.28 True translocation 25997882 25999708 122649928 122651753 NC_060943.1 CM039034.1 96.99 True translocation 122263268 122264446 122652611 122653789 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = -425142 121839976 121841002 122654461 122655487 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 4262625 126104385 126106268 122656245 122658128 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -4132078 121974722 121975974 122658660 122659912 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 54174 122030695 122033831 122660459 122663594 NC_060925.1 CM039034.1 97.51 True translocation 28955451 28956867 122663595 122665011 NC_060943.1 CM039034.1 96.31 True translocation 125890238 125892332 122665861 122667953 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 1635618 124250753 124254619 122671817 122667954 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 2217364 122030695 122032517 122672689 122674510 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 136070 122170472 122171397 122676395 122677320 NC_060925.1 CM039034.1 97.08 True local misassembly 122171970 122173304 122677893 122679225 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -28560 122145920 122148485 122680401 122682962 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 8162 122156648 122157528 122682963 122683843 NC_060925.1 CM039034.1 97.98 True indel: indel (<= 5bp) 122157822 122160095 122684138 122686411 NC_060925.1 CM039034.1 98.29 True translocation 27847796 27848446 122686795 122687445 NC_060943.1 CM039034.1 97.08 True relocation, inconsistency = -1892917 25955728 25957212 122687644 122689127 NC_060943.1 CM039034.1 96.03 True relocation, inconsistency = 310142 26269780 26271698 122691553 122693470 NC_060943.1 CM039034.1 96.66 True translocation 122263285 122266657 122694083 122697458 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = -180221 122086437 122088565 122697459 122699588 NC_060925.1 CM039034.1 96.7 True translocation 29589449 29591903 122701209 122703663 NC_060943.1 CM039034.1 95.97 True translocation 124217857 124218672 122705071 122704256 NC_060925.1 CM039034.1 97.3 True indel: indel (<= 5bp) 124216327 124217854 122706599 122705072 NC_060925.1 CM039034.1 98.17 True indel: indel (<= 5bp) 124215142 124215931 122707789 122707000 NC_060925.1 CM039034.1 98.35 True local misassembly 124214255 124214800 122708335 122707790 NC_060925.1 CM039034.1 98.71 True fake: not a misassembly (possible transposable element) 124226511 124230201 122712029 122708336 NC_060925.1 CM039034.1 98.29 True fake: not a misassembly (possible transposable element) 124207132 124207811 122712752 122712073 NC_060925.1 CM039034.1 97.0 True local misassembly 124205930 124210521 122717352 122712753 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 1927833 122275065 122277693 122717756 122720385 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -48256 122229666 122230227 122720614 122721175 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 2033994 124264946 124267959 122724910 122721900 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 1986810 122275348 122276210 122725175 122726036 NC_060925.1 CM039034.1 97.19 True local misassembly 122274173 122276784 122726037 122728648 NC_060925.1 CM039034.1 96.94 True fake: not a misassembly (possible transposable element) 125895067 125897531 122728793 122731257 NC_060925.1 CM039034.1 97.85 True fake: not a misassembly (possible transposable element) 122275746 122276852 122731858 122732964 NC_060925.1 CM039034.1 98.46 True indel: stretch of mismatches 122277012 122278023 122733124 122734135 NC_060925.1 CM039034.1 96.05 True local misassembly 122274173 122277058 122734362 122737248 NC_060925.1 CM039034.1 97.3 True fake: not a misassembly (possible transposable element) 125894722 125897620 122737792 122740690 NC_060925.1 CM039034.1 97.86 True fake: not a misassembly (possible transposable element) 122275767 122276852 122741223 122742308 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 3618139 125895117 125895702 122742434 122743017 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = -4069439 121826264 121829593 122743018 122746347 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 445522 122275169 122275766 122746401 122746998 NC_060925.1 CM039034.1 97.83 True local misassembly 122275767 122276852 122747168 122748253 NC_060925.1 CM039034.1 98.25 True local misassembly 122271439 122274223 122748953 122751737 NC_060925.1 CM039034.1 97.38 True local misassembly 122277281 122277908 122751738 122752366 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = 20400 122298571 122299289 122752629 122753347 NC_060925.1 CM039034.1 98.47 True indel: indel (<= 5bp) 122299487 122300585 122753543 122754641 NC_060925.1 CM039034.1 97.18 True local misassembly 122300586 122301865 122754811 122756090 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -28554 122273817 122277442 122756596 122760222 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 2127923 124406438 124408005 122762863 122761295 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1540827 125949210 125949792 122763241 122763823 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 141307 126094088 126095790 122766812 122768515 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -221140 125874948 125877070 122768813 122770935 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 156774 126035077 126036471 122772168 122773565 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = -30184 126006288 126010870 122773566 122778150 NC_060925.1 CM039034.1 97.21 True local misassembly 126011592 126013252 122778870 122780529 NC_060925.1 CM039034.1 98.49 True translocation 29583670 29585461 122781387 122783178 NC_060943.1 CM039034.1 96.04 True translocation 126038955 126040389 122783179 122784611 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = 212564 126253284 126255404 122784942 122787058 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -3951431 122304666 122305832 122787751 122788916 NC_060925.1 CM039034.1 98.11 True local misassembly 122305819 122306664 122789243 122790088 NC_060925.1 CM039034.1 98.23 True local misassembly 122307005 122308136 122790089 122791220 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 3102859 125410996 125413467 122793692 122791221 NC_060925.1 CM039034.1 98.91 True relocation, inconsistency = 1921273 123487828 123489611 122793804 122795587 NC_060925.1 CM039034.1 98.6 True indel: stretch of mismatches 123490069 123491877 122796045 122797853 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = -1176771 122317587 122319450 122800334 122802197 NC_060925.1 CM039034.1 99.25 True fake: not a misassembly (possible transposable element) 125397220 125398174 122804074 122803120 NC_060925.1 CM039034.1 98.02 True fake: not a misassembly (possible transposable element) 122317587 122319450 122804075 122805938 NC_060925.1 CM039034.1 99.2 True relocation, inconsistency = 2562683 124884040 124887316 122811127 122807845 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -529240 125410326 125413219 122814087 122811188 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 1944479 123463054 123463984 122815950 122816880 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 1148674 124612749 124615420 122819640 122816971 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 524881 124083810 124086365 122821143 122823694 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = 1080672 125167542 125174183 122831008 122824199 NC_060925.1 CM039034.1 95.95 True relocation, inconsistency = -432687 125594110 125599488 122837121 122831749 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 2751727 122838392 122839687 122838977 122840272 NC_060925.1 CM039034.1 99.3 True local misassembly 122837988 122842227 122840273 122844511 NC_060925.1 CM039034.1 97.67 True local misassembly 122838828 122840527 122844512 122846211 NC_060925.1 CM039034.1 98.19 True indel: stretch of mismatches 122840916 122842987 122846600 122848670 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -904257 121939113 121940843 122849053 122850781 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1518133 123458977 123461969 122850782 122853775 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -1525270 121939113 121942041 122856189 122859116 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 2351351 124293393 124294354 122860078 122859117 NC_060925.1 CM039034.1 98.85 True indel: indel (<= 5bp) 124292729 124293392 122860743 122860080 NC_060925.1 CM039034.1 99.25 True local misassembly 124291358 124292553 122862454 122861259 NC_060925.1 CM039034.1 98.24 True indel: indel (<= 5bp) 124290374 124291357 122863439 122862456 NC_060925.1 CM039034.1 98.58 True indel: indel (<= 5bp) 124289512 124290372 122864300 122863440 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 176036 124107214 124110992 122866784 122870561 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -1793706 122317287 122318945 122870562 122872220 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = 1156712 123475670 123477266 122872233 122873829 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 2781134 126258899 126259438 122874328 122874867 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 1984369 124267750 124271625 122881646 122877772 NC_060925.1 CM039034.1 97.63 True local misassembly 124268150 124271625 122886683 122883209 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 144713 124116923 124123436 122886684 122893197 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = -296053 123827384 123829763 122893198 122895577 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 288572 124119457 124124778 122896699 122902020 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -1283848 122840931 122842441 122902021 122903531 NC_060925.1 CM039034.1 98.03 True indel: indel (<= 5bp) 122842443 122843635 122903532 122904724 NC_060925.1 CM039034.1 95.98 True indel: indel (<= 5bp) 122843636 122846187 122904726 122907277 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 2114414 124960625 124962744 122909423 122907301 NC_060925.1 CM039034.1 97.65 True translocation 27402282 27403796 122910024 122911537 NC_060943.1 CM039034.1 96.11 True translocation 123503904 123508192 122913375 122917658 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 1184274 124694670 124696892 122922084 122919862 NC_060925.1 CM039034.1 98.61 True translocation 29149136 29150538 122926022 122927425 NC_060943.1 CM039034.1 96.01 True translocation 123440266 123444608 122928255 122932592 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 1649705 125095748 125098136 122936415 122934027 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 1569075 123523325 123525890 122937198 122939763 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -1222997 122304262 122305774 122941132 122942644 NC_060925.1 CM039034.1 98.88 True local misassembly 122305810 122306438 122943018 122943646 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = 1683565 123990004 123995605 122943647 122949245 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 1388567 125384173 125387820 122952893 122949246 NC_060925.1 CM039034.1 97.84 True local misassembly 125384173 125389650 122959349 122953873 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 1716920 123664441 123667252 122959350 122962157 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 1492054 125159726 125163736 122966581 122962577 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 1058238 124099288 124101487 122966582 122968781 NC_060925.1 CM039034.1 99.08 True local misassembly 124101828 124103012 122968782 122969966 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = -441548 123661987 123667315 122970489 122975816 NC_060925.1 CM039034.1 98.61 True local misassembly 123665276 123666242 122975817 122976783 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = -299118 123368308 123372941 122977967 122982601 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 2008736 125381678 125382668 122983592 122982602 NC_060925.1 CM039034.1 98.59 True translocation 29571699 29573289 122983680 122985270 NC_060943.1 CM039034.1 96.54 True relocation, inconsistency = 89711 29663219 29664035 122985489 122986306 NC_060943.1 CM039034.1 97.56 True relocation, inconsistency = -184907 29479129 29479753 122986307 122986931 NC_060943.1 CM039034.1 97.69 True translocation 123660184 123661986 122987380 122989182 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = 158082 123820069 123829671 122989183 122999127 NC_060925.1 CM039034.1 95.3 True relocation, inconsistency = -54385 123775287 123777427 122999128 123001273 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 43850 123821278 123822074 123001274 123002070 NC_060925.1 CM039034.1 98.47 True local misassembly 123822075 123825835 123002411 123006171 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = 1409500 125235719 125238088 123008904 123006536 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 1569276 123659947 123661986 123008905 123010943 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 158082 123820069 123829671 123010944 123020888 NC_060925.1 CM039034.1 95.29 True relocation, inconsistency = -145496 123684771 123688253 123021484 123024968 NC_060925.1 CM039034.1 98.94 True local misassembly 123684771 123689055 123025564 123029850 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 134278 123823334 123829671 123029851 123036189 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = -54385 123775287 123777427 123036190 123038335 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -1457885 122319543 122320147 123038336 123038940 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 1143795 123463966 123467312 123038964 123042310 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 328022 123795395 123797286 123042371 123044262 NC_060925.1 CM039034.1 99.05 True local misassembly 123797287 123799168 123044603 123046484 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 69004 123868173 123869007 123046485 123047319 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = 1364154 125233312 125235720 123049728 123047320 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 1385638 123842863 123847020 123049729 123053886 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -74766 123772255 123777427 123053887 123059065 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = -1460267 122317161 122317765 123059066 123059670 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 1772618 124090475 124095205 123059762 123064492 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -309973 123785233 123786072 123064493 123065332 NC_060925.1 CM039034.1 99.15 True relocation, inconsistency = 257290 124043568 124046667 123065538 123068637 NC_060925.1 CM039034.1 98.58 True local misassembly 124047007 124048982 123068638 123070613 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -276997 123772347 123777427 123070975 123076061 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = 235873 124013678 124015510 123076439 123078271 NC_060925.1 CM039034.1 98.04 True indel: indel (<= 5bp) 124015512 124016021 123078272 123078781 NC_060925.1 CM039034.1 98.82 True indel: indel (<= 5bp) 124016022 124016662 123078783 123079423 NC_060925.1 CM039034.1 95.16 True relocation, inconsistency = -222280 123794422 123795394 123079463 123080435 NC_060925.1 CM039034.1 97.43 True indel: indel (<= 5bp) 123795395 123797286 123080437 123082328 NC_060925.1 CM039034.1 99.05 True relocation, inconsistency = 246076 124043568 124048982 123082534 123087950 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -581232 123468112 123473088 123088312 123093288 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 1450589 124924274 124927734 123097344 123093885 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = 1397839 123523926 123525352 123097889 123099315 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 2308158 125834368 125837330 123102281 123099316 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 902802 124927610 124931565 123106237 123102282 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -455151 125380083 125382760 123108916 123106238 NC_060925.1 CM039034.1 97.71 True local misassembly 125380331 125384213 123113082 123109206 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 1853971 123524711 123525355 123113960 123114604 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 1865101 125390457 125394436 123118579 123114605 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 1929208 123455196 123458913 123120915 123124627 NC_060925.1 CM039034.1 98.84 True local misassembly 123454833 123455427 123124628 123125222 NC_060925.1 CM039034.1 98.71 True local misassembly 123455768 123456657 123125223 123126112 NC_060925.1 CM039034.1 98.88 True indel: indel (> 5bp) 123456993 123459501 123126442 123128950 NC_060925.1 CM039034.1 98.29 True local misassembly 123456993 123457497 123129497 123130001 NC_060925.1 CM039034.1 99.41 True indel: indel (<= 5bp) 123457499 123458920 123130002 123131423 NC_060925.1 CM039034.1 98.66 True indel: indel (<= 5bp) 123458921 123460559 123131425 123133063 NC_060925.1 CM039034.1 95.91 True indel: indel (<= 5bp) 123460562 123461125 123133064 123133627 NC_060925.1 CM039034.1 99.29 True relocation, inconsistency = -1157734 122304262 122305774 123134498 123136010 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 1121701 123427797 123431027 123136332 123139563 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 1766367 125197806 125201139 123143306 123139975 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 1358249 123836936 123838491 123144372 123145927 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 1544357 125383441 125385947 123149026 123146520 NC_060925.1 CM039034.1 98.32 True local misassembly 125381678 125383100 123150449 123149027 NC_060925.1 CM039034.1 98.59 True translocation 29571699 29573289 123150537 123152127 NC_060943.1 CM039034.1 96.54 True relocation, inconsistency = 89711 29663219 29664035 123152346 123153163 NC_060943.1 CM039034.1 97.56 True relocation, inconsistency = -184907 29479129 29479753 123153164 123153788 NC_060943.1 CM039034.1 97.69 True translocation 123660184 123661986 123154237 123156035 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 158082 123820069 123828981 123156036 123165290 NC_060925.1 CM039034.1 95.15 True relocation, inconsistency = -44871 123784181 123784715 123165361 123165895 NC_060925.1 CM039034.1 99.14 True relocation, inconsistency = -99945 123684771 123689301 123165896 123170428 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 82953 123772255 123777320 123170429 123175500 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = 1418553 125195874 125199261 123178888 123175501 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = -42152 125235719 125238025 123181194 123178889 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 1569276 123659947 123661986 123181195 123183233 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 158082 123820069 123829671 123183234 123193178 NC_060925.1 CM039034.1 95.29 True relocation, inconsistency = -145496 123684771 123688076 123193774 123197081 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 134618 123822695 123829671 123197082 123204059 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = -54385 123775287 123777427 123204060 123206205 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -1457885 122319543 122320147 123206206 123206810 NC_060925.1 CM039034.1 98.92 True local misassembly 122320488 122322407 123206811 123208730 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 1485753 123808161 123809036 123208731 123209606 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = -14615 123794422 123795394 123209607 123210579 NC_060925.1 CM039034.1 97.33 True indel: indel (<= 5bp) 123795395 123797286 123210581 123212472 NC_060925.1 CM039034.1 99.05 True local misassembly 123797287 123799018 123212813 123214544 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 43844 123842863 123848222 123214545 123219904 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -74427 123773796 123777427 123219905 123223541 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 235873 124013678 124015510 123223919 123225751 NC_060925.1 CM039034.1 98.09 True indel: indel (<= 5bp) 124015512 124016021 123225752 123226261 NC_060925.1 CM039034.1 98.82 True indel: indel (<= 5bp) 124016022 124016662 123226263 123226903 NC_060925.1 CM039034.1 95.16 True relocation, inconsistency = -233494 123783208 123784180 123226943 123227915 NC_060925.1 CM039034.1 97.43 True indel: indel (<= 5bp) 123784181 123786072 123227917 123229808 NC_060925.1 CM039034.1 99.15 True relocation, inconsistency = 257290 124043568 124048982 123230014 123235430 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = -581232 123468112 123473088 123235792 123240768 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 1917803 125391523 125394743 123244619 123241400 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 1864883 123523926 123525352 123245369 123246795 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 2308158 125833511 125837330 123250619 123246796 NC_060925.1 CM039034.1 98.17 True local misassembly 125832651 125837330 123256235 123251552 NC_060925.1 CM039034.1 98.27 True translocation 29678856 29679647 123256697 123257490 NC_060943.1 CM039034.1 96.6 True translocation 125380331 125384213 123261922 123258046 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 2024035 123354643 123356196 123262022 123263571 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = 354543 123710740 123711811 123263572 123264644 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -260374 123455196 123458913 123268403 123272115 NC_060925.1 CM039034.1 98.84 True local misassembly 123454833 123455427 123272116 123272710 NC_060925.1 CM039034.1 98.71 True local misassembly 123455768 123456657 123272711 123273600 NC_060925.1 CM039034.1 98.88 True indel: indel (> 5bp) 123456993 123459501 123273930 123276438 NC_060925.1 CM039034.1 98.25 True local misassembly 123456993 123457497 123276985 123277489 NC_060925.1 CM039034.1 99.41 True indel: indel (<= 5bp) 123457499 123458730 123277490 123278721 NC_060925.1 CM039034.1 98.73 True local misassembly 123454650 123458487 123278722 123282552 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -32970 123427004 123428079 123284039 123285115 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -42830 123385989 123388876 123285855 123288743 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 1618187 125007064 125008437 123290117 123288744 NC_060925.1 CM039034.1 98.29 True indel: indel (<= 5bp) 125005250 125007063 123291932 123290119 NC_060925.1 CM039034.1 97.35 True local misassembly 125003033 125004708 123293813 123292138 NC_060925.1 CM039034.1 98.27 True translocation 28729395 28730208 123293814 123294628 NC_060943.1 CM039034.1 96.39 True translocation 121942577 121945011 123294629 123297063 NC_060925.1 CM039034.1 97.21 True indel: indel (<= 5bp) 121945013 121946313 123297064 123298364 NC_060925.1 CM039034.1 98.62 True local misassembly 121946654 121947890 123298365 123299601 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 3800669 125750362 125755500 123306543 123301404 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 2335783 123407986 123408554 123308879 123309446 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 44531 123453086 123458296 123309447 123314656 NC_060925.1 CM039034.1 98.63 True local misassembly 123452857 123460526 123314657 123322326 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 19714 123480241 123480991 123322327 123323077 NC_060925.1 CM039034.1 99.27 True relocation, inconsistency = -26853 123455196 123459503 123324135 123328437 NC_060925.1 CM039034.1 98.4 True local misassembly 123453508 123459361 123328902 123334749 NC_060925.1 CM039034.1 99.06 True relocation, inconsistency = 1452895 124912257 124914868 123337362 123334750 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 1537160 123370003 123372559 123339900 123342456 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = -24477 123351347 123353379 123345721 123347753 NC_060925.1 CM039034.1 98.97 True relocation, inconsistency = 170649 123524029 123524670 123347754 123348395 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 1545474 125070737 125073647 123351898 123348988 NC_060925.1 CM039034.1 97.49 True translocation 28728097 28730261 123353710 123355875 NC_060943.1 CM039034.1 96.12 True translocation 125750892 125755500 123365843 123361238 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = 2320035 123420904 123425252 123371448 123375791 NC_060925.1 CM039034.1 98.97 True relocation, inconsistency = 243371 123669818 123672180 123376986 123379348 NC_060925.1 CM039034.1 98.77 True indel: indel (<= 5bp) 123672182 123672752 123379349 123379919 NC_060925.1 CM039034.1 97.02 True local misassembly 123672878 123673720 123380384 123381226 NC_060925.1 CM039034.1 99.41 True indel: indel (<= 5bp) 123673724 123675243 123381227 123382746 NC_060925.1 CM039034.1 98.68 True indel: indel (<= 5bp) 123675245 123675923 123382747 123383425 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -197145 123479061 123480991 123383708 123385638 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = -26513 123455460 123459782 123386620 123390938 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 390559 123850342 123852539 123390939 123393131 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 1135524 124988094 124989052 123394089 123393132 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 1528587 123455460 123458390 123394090 123397016 NC_060925.1 CM039034.1 98.54 True local misassembly 123454650 123456238 123397017 123398604 NC_060925.1 CM039034.1 98.77 True local misassembly 123453519 123459361 123398605 123404437 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 1774870 125240913 125241932 123411529 123410509 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -115565 125354479 125356477 123413528 123411530 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 1587259 123764870 123765930 123413529 123414589 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -310694 123455237 123459361 123414590 123418709 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 1778946 125240913 125241932 123421725 123420705 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -115565 125354479 125356477 123423724 123421726 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 1622840 123728834 123730213 123423725 123425105 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = -274997 123455217 123459506 123425106 123429390 NC_060925.1 CM039034.1 98.53 True local misassembly 123455460 123459506 123429763 123433804 NC_060925.1 CM039034.1 98.52 True local misassembly 123455460 123459506 123434177 123438219 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -38753 123420754 123422422 123438220 123439883 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -1127817 122296171 122298699 123441449 123443977 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 2680119 124979075 124980403 123445562 123444234 NC_060925.1 CM039034.1 98.34 True indel: indel (<= 5bp) 124978182 124978736 123446450 123445896 NC_060925.1 CM039034.1 99.1 True relocation, inconsistency = 1495144 123479061 123481248 123448240 123450427 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = 249843 123731092 123731638 123450428 123450974 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 1231332 124966263 124966873 123452255 123451645 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1506901 123453508 123459361 123452256 123458099 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 208355 123673072 123673941 123463455 123464321 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = -361991 123311951 123316495 123464322 123468866 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 99590 123416579 123417597 123469360 123470378 NC_060925.1 CM039034.1 98.43 True fake: not a misassembly (possible transposable element) 125835792 125838010 123472600 123470379 NC_060925.1 CM039034.1 98.38 True fake: not a misassembly (possible transposable element) 123416579 123418358 123473094 123474873 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = 304911 123723440 123727024 123475044 123478629 NC_060925.1 CM039034.1 98.22 True translocation 25925684 25926619 123478780 123479715 NC_060943.1 CM039034.1 96.9 True translocation 124286548 124288332 123482358 123480573 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 179458 124103740 124104588 123484860 123485708 NC_060925.1 CM039034.1 99.18 True local misassembly 124104589 124106459 123486049 123487919 NC_060925.1 CM039034.1 99.04 True local misassembly 124108603 124111561 123488698 123491656 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 811247 124924101 124925404 123493046 123491743 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = -207691 125126290 125131791 123498546 123493047 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 1344218 123780597 123782071 123498547 123500021 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 1583041 125367414 125370653 123505570 123502323 NC_060925.1 CM039034.1 98.86 True local misassembly 125367597 125370466 123508448 123505571 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 1881831 123481844 123484524 123508449 123511129 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 635300 124119825 124124215 123511130 123515522 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 1083194 125209650 125212669 123518538 123515523 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 76498 125126290 125133151 123525400 123518539 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 1002174 124122880 124123816 123525401 123526339 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -670309 123453508 123459361 123526340 123532183 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 1777639 125238996 125241932 123537115 123534179 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 1820079 123416579 123417504 123537674 123538599 NC_060925.1 CM039034.1 98.71 True relocation, inconsistency = 308310 123725815 123731133 123538600 123543914 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -1475896 122255238 122258352 123543915 123547025 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 2694436 124952945 124955949 123550185 123547182 NC_060925.1 CM039034.1 96.61 True translocation 29741882 29744446 123551488 123554056 NC_060943.1 CM039034.1 95.91 True translocation 124108842 124111561 123555208 123557927 NC_060925.1 CM039034.1 99.15 True relocation, inconsistency = 817615 124929263 124930161 123558912 123558014 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -202934 125129990 125131791 123561118 123559318 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 1005187 124119181 124124802 123561119 123566742 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -1787252 122337551 122339490 123566743 123568683 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 3027328 125367597 125369288 123570978 123569279 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 1881831 123481844 123484524 123570979 123573659 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 635300 124119825 124124215 123573660 123578052 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 1083194 125209650 125212669 123581068 123578053 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 76498 125126290 125133151 123587930 123581069 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 1006933 124118119 124119057 123587931 123588869 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -665550 123453508 123459361 123588870 123594713 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 1777639 125238996 125241932 123599645 123596709 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 1820079 123416579 123417504 123600204 123601129 NC_060925.1 CM039034.1 98.71 True relocation, inconsistency = 308310 123725815 123731133 123601130 123606444 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -287919 123443215 123444292 123606445 123607520 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 46916 123491702 123493237 123608014 123609548 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 241687 123735714 123739589 123610338 123614213 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -1424916 122315235 122317022 123614775 123616562 NC_060925.1 CM039034.1 97.26 True local misassembly 122317023 122319095 123616902 123618974 NC_060925.1 CM039034.1 98.99 True translocation 29741882 29744446 123621157 123623725 NC_060943.1 CM039034.1 95.91 True local misassembly 29741882 29744446 123624898 123627466 NC_060943.1 CM039034.1 95.95 True translocation 124112316 124114395 123629710 123631789 NC_060925.1 CM039034.1 98.89 True local misassembly 124119536 124124115 123632164 123636744 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 1242455 125367597 125369288 123639287 123637588 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 939238 124424770 124428358 123642876 123639288 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 299974 124119369 124124795 123642877 123648297 NC_060925.1 CM039034.1 98.69 True local misassembly 124120037 124121787 123648298 123650048 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = -284852 123836936 123840108 123650049 123653217 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 1201977 125042086 125048388 123659519 123653218 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -140405 125175516 125178942 123666495 123663068 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 44873 125129993 125130585 123667145 123666553 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 1005875 124119181 124124115 123667148 123672083 NC_060925.1 CM039034.1 98.2 True translocation 26003123 26004097 123672084 123673063 NC_060943.1 CM039034.1 96.81 True translocation 123734885 123737988 123673064 123676164 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -672694 123065295 123067147 123676165 123678017 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 1231586 124299014 124302324 123681607 123678298 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 390228 123907940 123908780 123681613 123682453 NC_060925.1 CM039034.1 98.57 True local misassembly 123909121 123910354 123682454 123683687 NC_060925.1 CM039034.1 99.03 True relocation, inconsistency = 1352519 125263167 125264431 123685245 123683981 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 698589 125964977 125968680 123687202 123690905 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -1926034 124046761 124049467 123695020 123697726 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 244472 124293940 124297851 123701637 123697727 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -9522 124299014 124302324 123706084 123702775 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 423535 123874633 123875473 123706090 123706930 NC_060925.1 CM039034.1 98.57 True local misassembly 123875814 123877047 123706931 123708164 NC_060925.1 CM039034.1 99.03 True relocation, inconsistency = 1393263 125270983 125274246 123712101 123708837 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 681298 125955834 125961204 123712391 123717761 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 155470 126116710 126118153 123717797 123719240 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 1819296 124294256 124296613 123722398 123720041 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 464426 123825836 123829684 123722544 123726392 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 1453029 125282714 125285240 123728919 123726393 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 2607312 122671038 122675116 123729205 123733283 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 2694039 125369156 125369742 123733870 123733284 NC_060925.1 CM039034.1 98.52 True indel: indel (<= 5bp) 125368258 125369155 123734769 123733872 NC_060925.1 CM039034.1 99.78 True indel: indel (> 5bp) 125367450 125368257 123735584 123734777 NC_060925.1 CM039034.1 99.13 True local misassembly 125366831 125367449 123736543 123735925 NC_060925.1 CM039034.1 96.61 True indel: indel (<= 5bp) 125365442 125366830 123737934 123736546 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 1625629 123737806 123739589 123738158 123739941 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 126444 123866629 123869343 123740537 123743256 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 1497623 125366967 125370649 123746947 123743257 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 1354554 124007238 124011815 123747545 123752123 NC_060925.1 CM039034.1 97.84 True translocation 29447757 29449109 123752124 123753476 NC_060943.1 CM039034.1 95.35 True relocation, inconsistency = -3524634 25925684 25926619 123754685 123755620 NC_060943.1 CM039034.1 96.69 True translocation 124286548 124288332 123758263 123756478 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 183674 124094478 124101129 123760008 123766658 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -576136 123524994 123526373 123766659 123768037 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = 1599916 125126290 125132708 123774455 123768038 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 1344218 123780597 123782071 123774456 123775930 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 1584737 125367597 125369288 123778235 123776536 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 939238 124425449 124428358 123781145 123778236 NC_060925.1 CM039034.1 99.07 True local misassembly 124423602 124425107 123782651 123781146 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -947052 125367414 125370653 123785899 123782652 NC_060925.1 CM039034.1 98.89 True local misassembly 125367601 125370466 123788773 123785900 NC_060925.1 CM039034.1 98.86 True local misassembly 125367414 125370653 123792021 123788774 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 2375118 122988994 122992137 123792180 123795323 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 1112161 124104551 124106459 123795576 123797484 NC_060925.1 CM039034.1 99.06 True relocation, inconsistency = 822717 124929263 124930161 123798469 123797571 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 830460 124094689 124098295 123798977 123802581 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -628823 123469559 123470963 123802668 123804073 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 1655326 125126290 125132708 123810491 123804074 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 1002174 124122880 124123646 123810492 123811259 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 1166942 125290779 125293787 123814267 123811260 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = -79875 125367414 125370653 123817515 123814268 NC_060925.1 CM039034.1 98.89 True local misassembly 125367601 125370466 123820389 123817516 NC_060925.1 CM039034.1 98.89 True local misassembly 125367414 125370653 123823637 123820390 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 1242276 124119457 124125043 123823732 123829316 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 1155940 125281322 125282873 123830868 123829317 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 68652 125210701 125212669 123832833 123830869 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 162517 125041524 125048183 123839491 123832834 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 1582162 123453695 123459361 123839492 123845148 NC_060925.1 CM039034.1 98.89 True local misassembly 123453502 123458814 123846089 123851398 NC_060925.1 CM039034.1 98.72 True local misassembly 123461447 123463330 123852334 123854215 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 1698928 125165367 125170883 123862844 123857324 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 1040877 124119536 124124115 123863219 123867799 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 297875 124424770 124428358 123873931 123870343 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 299974 124119369 124124795 123873932 123879352 NC_060925.1 CM039034.1 98.71 True local misassembly 124120037 124121765 123879353 123881081 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 177360 124299126 124304095 123886047 123881082 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -834188 125126290 125133151 123893070 123886210 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 1002174 124122880 124123975 123893071 123894167 NC_060925.1 CM039034.1 98.22 True translocation 26002983 26005138 123894168 123896328 NC_060943.1 CM039034.1 96.85 True translocation 124425676 124426499 123897152 123896329 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -625122 125040755 125048388 123907193 123899562 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 916639 124122394 124123975 123907194 123908776 NC_060925.1 CM039034.1 98.26 True translocation 26002983 26003960 123908777 123909759 NC_060943.1 CM039034.1 96.9 True translocation 123423038 123427546 123909760 123914264 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 694784 124122331 124123975 123914265 123915910 NC_060925.1 CM039034.1 98.21 True translocation 26002983 26004186 123915911 123917119 NC_060943.1 CM039034.1 96.81 True translocation 123734974 123736753 123917120 123918896 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -672694 123064060 123067147 123918897 123921984 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 1231586 124299014 124302324 123925574 123922265 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 423535 123874633 123875473 123925580 123926420 NC_060925.1 CM039034.1 98.57 True local misassembly 123875814 123877047 123926421 123927654 NC_060925.1 CM039034.1 98.95 True translocation 29074227 29075613 123928015 123929404 NC_060943.1 CM039034.1 95.88 True translocation 125305884 125308517 123932038 123929405 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 2630767 122670321 122675116 123932039 123936834 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 2694039 125369156 125369742 123937421 123936835 NC_060925.1 CM039034.1 98.65 True indel: indel (<= 5bp) 125368258 125369155 123938320 123937423 NC_060925.1 CM039034.1 99.78 True indel: indel (> 5bp) 125367450 125368257 123939135 123938328 NC_060925.1 CM039034.1 99.13 True local misassembly 125366831 125367449 123940094 123939476 NC_060925.1 CM039034.1 96.77 True indel: indel (<= 5bp) 125365442 125366830 123941485 123940097 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 1625629 123737806 123739589 123941709 123943492 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 126444 123866629 123869343 123944088 123946807 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 1497623 125366967 125370649 123950498 123946808 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 3045936 122318246 122319404 123952125 123953283 NC_060925.1 CM039034.1 98.96 True local misassembly 122319405 122321229 123953623 123955447 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 3028557 125352649 125354025 123959686 123958310 NC_060925.1 CM039034.1 98.18 True local misassembly 125350159 125352113 123961836 123959882 NC_060925.1 CM039034.1 98.47 True translocation 29728885 29729425 123961866 123962406 NC_060943.1 CM039034.1 97.23 True translocation 124286548 124288332 123969295 123967510 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 179496 124103740 124104550 123971797 123972607 NC_060925.1 CM039034.1 99.26 True local misassembly 124104551 124106459 123972948 123974856 NC_060925.1 CM039034.1 99.0 True relocation, inconsistency = 822717 124929531 124930161 123975574 123974943 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 1420069 123507246 123509046 123975575 123977375 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 563552 124072599 124074292 123977376 123979067 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 44888 124119181 124124115 123979068 123984003 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 1242455 125367601 125369288 123986542 123984847 NC_060925.1 CM039034.1 98.73 True local misassembly 125367597 125370653 123989607 123986543 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 1881831 123481844 123484524 123989608 123992288 NC_060925.1 CM039034.1 98.5 True relocation, inconsistency = 635300 124119825 124124215 123992289 123996681 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 1083194 125210701 125212669 123998646 123996682 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 162517 125040755 125048183 124006073 123998647 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 1581393 123455824 123459361 124006074 124009606 NC_060925.1 CM039034.1 98.9 True translocation 25879026 25880416 124009690 124011080 NC_060943.1 CM039034.1 96.62 True translocation 124965831 124966873 124012684 124011642 NC_060925.1 CM039034.1 98.56 True local misassembly 124964072 124964933 124014442 124013581 NC_060925.1 CM039034.1 96.06 True local misassembly 124962562 124964071 124016292 124014783 NC_060925.1 CM039034.1 98.87 True relocation, inconsistency = 90079 124869509 124872119 124019266 124016656 NC_060925.1 CM039034.1 99.0 True local misassembly 124867539 124868569 124021233 124020203 NC_060925.1 CM039034.1 98.74 True indel: indel (<= 5bp) 124867035 124867537 124021736 124021234 NC_060925.1 CM039034.1 97.81 True indel: indel (<= 5bp) 124864995 124867034 124023777 124021738 NC_060925.1 CM039034.1 97.94 True local misassembly 124863145 124864653 124025286 124023778 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -506144 125367597 125369288 124026986 124025287 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 1881831 123481844 123484524 124026987 124029667 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 635300 124119825 124124127 124029668 124033972 NC_060925.1 CM039034.1 98.7 True local misassembly 124119369 124125043 124033973 124039633 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 915140 125040779 125048388 124047837 124040229 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 1232430 123805576 123808165 124047838 124050427 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 311355 124119521 124124115 124050428 124055023 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 1168364 125292480 125293318 124055862 124055024 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 2617488 122670811 122674987 124055867 124060043 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = 1624138 124299675 124302163 124062531 124060044 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 174291 124121766 124125383 124062532 124066151 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 1246951 125373434 125374983 124067703 124066152 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 97885 125269624 125275548 124073631 124067704 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 679657 125955376 125959725 124073802 124078153 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 671924 125281058 125283451 124080547 124078154 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 905643 126190810 126192815 124082263 124084269 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -2179181 124013657 124015510 124084292 124086145 NC_060925.1 CM039034.1 98.0 True indel: indel (<= 5bp) 124015512 124016021 124086146 124086655 NC_060925.1 CM039034.1 99.22 True indel: indel (<= 5bp) 124016022 124018550 124086657 124089185 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 1347867 125366967 125370781 124093557 124089735 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -402055 125766291 125768728 124096284 124093851 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 394957 125366967 125370639 124100659 124096979 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 2690974 122671038 122675413 124101239 124105614 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 2692896 125369156 125370639 124107944 124106461 NC_060925.1 CM039034.1 98.72 True indel: indel (<= 5bp) 125368258 125369155 124108843 124107946 NC_060925.1 CM039034.1 99.67 True indel: indel (> 5bp) 125367450 125368257 124109658 124108851 NC_060925.1 CM039034.1 99.01 True local misassembly 125366831 125367449 124110617 124109999 NC_060925.1 CM039034.1 96.77 True indel: indel (<= 5bp) 125365791 125366830 124111659 124110620 NC_060925.1 CM039034.1 98.65 True local misassembly 125368258 125369155 124113258 124112361 NC_060925.1 CM039034.1 99.55 True indel: indel (> 5bp) 125367661 125368257 124113862 124113266 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = 1321829 124037521 124045831 124113863 124122176 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 1236882 125282714 125283547 124123010 124122177 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 1411785 123866629 123869343 124124428 124127147 NC_060925.1 CM039034.1 98.93 True relocation, inconsistency = 1497623 125366967 125370649 124130838 124127148 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 89089 125270205 125274189 124138512 124134527 NC_060925.1 CM039034.1 99.0 True fake: not a misassembly (possible transposable element) 125609064 125610408 124140219 124138876 NC_060925.1 CM039034.1 96.95 True fake: not a misassembly (possible transposable element) 125274581 125275295 124140935 124140221 NC_060925.1 CM039034.1 97.9 True local misassembly 125272603 125274240 124142573 124140936 NC_060925.1 CM039034.1 98.9 True indel: indel (<= 5bp) 125271462 125272602 124143715 124142575 NC_060925.1 CM039034.1 99.04 True fake: not a misassembly (possible transposable element) 124060474 124061990 124144010 124145526 NC_060925.1 CM039034.1 99.3 True fake: not a misassembly (possible transposable element) 125262389 125266374 124149513 124145527 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = 1390084 123869930 123870539 124151279 124151888 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 1399478 125273381 125276025 124157898 124155252 NC_060925.1 CM039034.1 98.19 True local misassembly 125271231 125272086 124159369 124158513 NC_060925.1 CM039034.1 98.37 True fake: not a misassembly (possible transposable element) 122657519 122662123 124160492 124165125 NC_060925.1 CM039034.1 96.59 True fake: not a misassembly (possible transposable element) 125266964 125267478 124166361 124165847 NC_060925.1 CM039034.1 98.83 True indel: indel (<= 5bp) 125265565 125266963 124167761 124166363 NC_060925.1 CM039034.1 98.36 True local misassembly 125262389 125264270 124170258 124168376 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 1202237 124058882 124059761 124170649 124171528 NC_060925.1 CM039034.1 98.98 True local misassembly 124059813 124061990 124171923 124174100 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 1208214 125270205 125274190 124178087 124174101 NC_060925.1 CM039034.1 99.2 True relocation, inconsistency = 1678691 123590162 123591129 124178472 124179440 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 278728 123869930 123870539 124179513 124180122 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 1739669 125610955 125611582 124181305 124180679 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 1548723 124059338 124062088 124181306 124184059 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 1145907 125207996 125212913 124188977 124184060 NC_060925.1 CM039034.1 98.76 True local misassembly 125207048 125207620 124189586 124189014 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 1142867 124060474 124061990 124189587 124191103 NC_060925.1 CM039034.1 99.24 True relocation, inconsistency = 1199247 125261238 125266374 124196243 124191104 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 1135792 124123236 124125445 124196244 124198455 NC_060925.1 CM039034.1 98.7 True translocation 28876093 28877471 124199303 124200681 NC_060943.1 CM039034.1 95.72 True translocation 125265187 125266374 124203172 124201985 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = -105018 125366976 125369763 124206409 124203614 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 1302209 124059903 124064178 124206998 124211274 NC_060925.1 CM039034.1 99.09 True relocation, inconsistency = 1198210 125264083 125265885 124213078 124211275 NC_060925.1 CM039034.1 99.23 True relocation, inconsistency = 1138976 124119369 124125106 124213079 124218819 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = -1759716 122365391 122369486 124218820 124222912 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 1444283 123813798 123815298 124222941 124224441 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 278362 124093669 124094688 124224450 124225469 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 20070 124114759 124117322 124225470 124228033 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -299112 123818211 123819703 124228034 124229526 NC_060925.1 CM039034.1 99.16 True relocation, inconsistency = 273941 124093669 124094688 124229551 124230570 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 20070 124114759 124117322 124230571 124233134 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -306934 123810389 123812075 124233135 124234820 NC_060925.1 CM039034.1 99.04 True relocation, inconsistency = 281762 124093838 124095125 124234821 124236108 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = -1916059 122180495 122181295 124237537 124238336 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 3696655 125877951 125880925 124238337 124241311 NC_060925.1 CM039034.1 97.48 True translocation 28486448 28489061 124242414 124245027 NC_060943.1 CM039034.1 96.14 True translocation 125278766 125283637 124254145 124249270 NC_060925.1 CM039034.1 98.71 True local misassembly 125279343 125282162 124256969 124254146 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 12912 125265276 125266430 124258124 124256970 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = -504747 125765820 125770022 124262316 124258125 NC_060925.1 CM039034.1 98.05 True local misassembly 125768426 125769221 124263114 124262319 NC_060925.1 CM039034.1 99.12 True indel: indel (<= 5bp) 125767685 125768425 124263857 124263117 NC_060925.1 CM039034.1 99.33 True indel: indel (> 5bp) 125766011 125767310 124265525 124264226 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 480608 125278855 125285402 124272077 124265526 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -489788 125765820 125768642 124274896 124272078 NC_060925.1 CM039034.1 98.03 True local misassembly 125768426 125769221 124275694 124274899 NC_060925.1 CM039034.1 99.12 True indel: indel (<= 5bp) 125767685 125768425 124276437 124275697 NC_060925.1 CM039034.1 99.33 True indel: indel (> 5bp) 125765997 125767310 124278119 124276806 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 473471 125289233 125292525 124281412 124278120 NC_060925.1 CM039034.1 98.85 True local misassembly 125280951 125285401 124287997 124283547 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -490820 125770043 125771023 124289725 124288745 NC_060925.1 CM039034.1 99.59 True local misassembly 125768426 125769221 124290994 124290199 NC_060925.1 CM039034.1 99.12 True indel: indel (<= 5bp) 125767685 125768425 124291737 124290997 NC_060925.1 CM039034.1 99.06 True indel: indel (> 5bp) 125765997 125767310 124293419 124292106 NC_060925.1 CM039034.1 98.87 True relocation, inconsistency = 473471 125289233 125292525 124296712 124293420 NC_060925.1 CM039034.1 98.91 True translocation 29623627 29624569 124299114 124300056 NC_060943.1 CM039034.1 96.5 True translocation 122672515 122677444 124301975 124306905 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 2604344 125281789 125283121 124308238 124306906 NC_060925.1 CM039034.1 98.83 True translocation 29252534 29253070 124310928 124311464 NC_060943.1 CM039034.1 97.58 True relocation, inconsistency = -458579 28806730 28808196 124323703 124325169 NC_060943.1 CM039034.1 96.39 True translocation 125271323 125273833 124328913 124326402 NC_060925.1 CM039034.1 99.12 True local misassembly 125270205 125274190 124334111 124330125 NC_060925.1 CM039034.1 99.02 True relocation, inconsistency = 1207968 124061218 124062236 124334112 124335130 NC_060925.1 CM039034.1 99.17 True indel: indel (<= 5bp) 124062237 124064180 124335132 124337075 NC_060925.1 CM039034.1 99.23 True relocation, inconsistency = 55086 124119369 124123436 124337178 124341245 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 1139514 125263507 125265238 124343534 124341802 NC_060925.1 CM039034.1 99.02 True relocation, inconsistency = -11895 125270205 125274190 124348732 124344746 NC_060925.1 CM039034.1 99.02 True relocation, inconsistency = 1207968 124061218 124062236 124348733 124349751 NC_060925.1 CM039034.1 99.13 True indel: indel (<= 5bp) 124062237 124064180 124349753 124351696 NC_060925.1 CM039034.1 99.23 True relocation, inconsistency = 55086 124119369 124123436 124351799 124355866 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = -1932731 122190706 122191984 124355867 124357146 NC_060925.1 CM039034.1 98.01 True translocation 28807234 28807935 124357188 124357889 NC_060943.1 CM039034.1 96.72 True translocation 125262446 125266374 124364314 124360385 NC_060925.1 CM039034.1 99.13 True relocation, inconsistency = 1200209 124061161 124062236 124364315 124365390 NC_060925.1 CM039034.1 99.21 True indel: indel (<= 5bp) 124062237 124064180 124365392 124367335 NC_060925.1 CM039034.1 99.18 True relocation, inconsistency = 55086 124119369 124123436 124367438 124371505 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -1959247 122164190 122165215 124371506 124372531 NC_060925.1 CM039034.1 98.17 True translocation 27569996 27571037 124372827 124373868 NC_060943.1 CM039034.1 96.93 True relocation, inconsistency = -861357 26715779 26716745 124379967 124380933 NC_060943.1 CM039034.1 96.07 True translocation 124119475 124125106 124381484 124387118 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -1759716 122365391 122369486 124387119 124391211 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 490485 122859972 122862712 124391212 124393954 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1230123 124093669 124095125 124394788 124396244 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = -1916059 122180495 122181419 124397673 124398596 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 3030376 125218186 125222465 124409266 124404987 NC_060925.1 CM039034.1 98.71 True relocation, inconsistency = -550624 125765820 125768809 124412252 124409267 NC_060925.1 CM039034.1 97.89 True local misassembly 125768426 125769221 124413050 124412255 NC_060925.1 CM039034.1 99.12 True indel: indel (<= 5bp) 125767685 125768425 124413793 124413053 NC_060925.1 CM039034.1 99.19 True relocation, inconsistency = 1429022 124337536 124338603 124414920 124413853 NC_060925.1 CM039034.1 99.91 True local misassembly 124336200 124337535 124416596 124415261 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = -1436169 125770043 125771023 124418922 124417942 NC_060925.1 CM039034.1 99.39 True relocation, inconsistency = 3093703 122670130 122675994 124419268 124425131 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = 2577313 125253542 125256029 124427617 124425132 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 2393739 122856259 122859802 124427618 124431161 NC_060925.1 CM039034.1 97.8 True local misassembly 122860035 122861693 124431733 124433391 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 995941 123862826 123866800 124438583 124442558 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 1401876 125270378 125273106 124446815 124444087 NC_060925.1 CM039034.1 98.97 True relocation, inconsistency = -100262 125366967 125370639 124450496 124446816 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 76822 125289233 125290144 124451408 124450497 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 722441 126013197 126016557 124452020 124455389 NC_060925.1 CM039034.1 96.88 True translocation 29664235 29665055 124456368 124457187 NC_060943.1 CM039034.1 97.81 True translocation 124340438 124343484 124460978 124457932 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -967783 125301230 125308220 124467967 124460979 NC_060925.1 CM039034.1 99.03 True translocation 28539573 28541409 124473355 124475192 NC_060943.1 CM039034.1 96.35 True relocation, inconsistency = 1089988 29638413 29639222 124482208 124483016 NC_060943.1 CM039034.1 96.67 True translocation 125264335 125266374 124487878 124485838 NC_060925.1 CM039034.1 99.09 True relocation, inconsistency = 1397856 123862826 123866478 124487879 124491530 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 255952 124122431 124123260 124491531 124492360 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = -296733 123826528 123830542 124492361 124496378 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 288913 124119456 124125135 124496379 124502056 NC_060925.1 CM039034.1 98.61 True local misassembly 124121737 124123348 124502057 124503668 NC_060925.1 CM039034.1 98.99 True relocation, inconsistency = 174467 124298004 124302324 124508177 124503857 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 172516 124119369 124125135 124508530 124514295 NC_060925.1 CM039034.1 98.54 True local misassembly 124121737 124123348 124514296 124515907 NC_060925.1 CM039034.1 99.03 True relocation, inconsistency = 175239 124298776 124302324 124519643 124516096 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -976287 125269957 125274196 124524751 124520510 NC_060925.1 CM039034.1 98.8 True local misassembly 125269957 125273106 124530532 124527381 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 2689326 122577618 122579380 124531058 124532820 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 1441210 124020591 124026626 124532821 124538856 NC_060925.1 CM039034.1 98.18 True fake: not a misassembly (possible transposable element) 125010314 125012435 124540974 124538857 NC_060925.1 CM039034.1 98.31 True fake: not a misassembly (possible transposable element) 124029429 124031807 124540975 124543353 NC_060925.1 CM039034.1 96.89 True local misassembly 124030448 124034029 124543354 124546930 NC_060925.1 CM039034.1 98.32 True local misassembly 124029612 124032822 124546931 124550144 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 1167110 125200128 125200854 124551066 124550340 NC_060925.1 CM039034.1 96.29 True indel: indel (<= 5bp) 125198146 125200126 124553047 124551067 NC_060925.1 CM039034.1 98.89 True local misassembly 125194284 125197805 124556569 124553048 NC_060925.1 CM039034.1 98.5 True local misassembly 125189522 125193978 124561665 124557209 NC_060925.1 CM039034.1 98.18 True local misassembly 125188465 125188992 124562716 124562189 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -76826 125262572 125265290 124565431 124562717 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 1229620 124029429 124032951 124565432 124568955 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 1782916 125816423 125817622 124570710 124569511 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 643440 125171668 125172484 124572025 124571209 NC_060925.1 CM039034.1 98.29 True indel: indel (<= 5bp) 125169672 125171667 124574022 124572027 NC_060925.1 CM039034.1 98.85 True local misassembly 125166339 125169331 124577015 124574023 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 1732606 123428812 123432062 124578686 124581935 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 2024732 125456796 125457468 124582609 124581937 NC_060925.1 CM039034.1 96.14 True local misassembly 125455286 125456457 124583781 124582610 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 3589747 121863416 121865193 124584127 124585907 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 3021652 124887442 124888637 124587698 124586504 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 1412889 123470224 123472445 124589163 124591385 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 1890993 125363439 125366797 124594748 124591386 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 1319900 124041408 124043538 124594749 124596880 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -223295 123826464 123830443 124603101 124607081 NC_060925.1 CM039034.1 98.12 True local misassembly 123826464 123830443 124608542 124612522 NC_060925.1 CM039034.1 98.12 True local misassembly 123826464 123827397 124613983 124614916 NC_060925.1 CM039034.1 96.68 True indel: indel (<= 5bp) 123827398 123829193 124614918 124616713 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 1538220 125367414 125370362 124619670 124616714 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 424561 124940911 124942346 124621612 124620177 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 554442 124380776 124385873 124627307 124622208 NC_060925.1 CM039034.1 98.21 True local misassembly 124379343 124386213 124634181 124627308 NC_060925.1 CM039034.1 98.5 True local misassembly 124380352 124383761 124637591 124634182 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -991913 125366967 125370649 124642897 124639207 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 97924 125262389 125266374 124649552 124645566 NC_060925.1 CM039034.1 99.15 True relocation, inconsistency = -108078 125366967 125370466 124653060 124649553 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 96565 125262389 125266374 124661074 124657088 NC_060925.1 CM039034.1 99.17 True fake: not a misassembly (possible transposable element) 124439399 124440816 124663108 124661691 NC_060925.1 CM039034.1 97.39 True fake: not a misassembly (possible transposable element) 125262389 125266374 124667194 124663208 NC_060925.1 CM039034.1 99.1 True translocation 29525155 29525881 124667321 124668047 NC_060943.1 CM039034.1 96.64 True translocation 124075665 124078315 124668048 124670699 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 29939 124115063 124117322 124677508 124679766 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = -303533 123813798 123815298 124679775 124681275 NC_060925.1 CM039034.1 98.73 True fake: not a misassembly (possible transposable element) 124093669 124094800 124681284 124682415 NC_060925.1 CM039034.1 98.59 True fake: not a misassembly (possible transposable element) 123816441 123819703 124682416 124685679 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 273941 124093669 124094699 124685704 124686734 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = 1658244 125752944 125755395 124689188 124686735 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 1937467 123814712 123815476 124689189 124689952 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 2138793 125956481 125961204 124692164 124696888 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 670769 125280056 125283637 124702544 124698963 NC_060925.1 CM039034.1 99.05 True fake: not a misassembly (possible transposable element) 125537434 125538367 124703478 124702545 NC_060925.1 CM039034.1 98.68 True fake: not a misassembly (possible transposable element) 125279039 125283637 124710364 124705762 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = -10877 125278766 125283637 124721518 124716643 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = -504072 125781586 125782837 124722771 124721519 NC_060925.1 CM039034.1 99.1 True relocation, inconsistency = 11558 125765678 125770027 124727110 124722772 NC_060925.1 CM039034.1 98.35 True local misassembly 125766690 125768403 124728818 124727111 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 1464365 124299204 124302324 124731938 124728819 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 1621752 122672507 122674486 124731939 124733918 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1716125 124390612 124396812 124740122 124733919 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = 45882 124341267 124344527 124743586 124740325 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = -1429706 125766966 125770027 124747582 124744532 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 1704748 124058657 124061034 124747583 124749962 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 1304084 125365119 125370649 124755503 124749963 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 1022168 124341444 124342950 124757010 124755504 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 2028031 122308721 122313412 124757011 124761705 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 3053554 125366967 125370466 124765213 124761706 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 1304727 124060306 124062239 124765214 124767147 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 421046 124487767 124491003 124774866 124771629 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = -778119 125263167 125265885 124777586 124774867 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 960650 124298684 124302324 124781419 124777779 NC_060925.1 CM039034.1 98.38 True local misassembly 124297254 124302324 124787602 124782539 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -8502 124297980 124302324 124795377 124791034 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -1124116 125419014 125420562 124798462 124796911 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 464311 124952209 124954355 124800955 124798810 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 2150071 122793551 122802137 124800956 124809538 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -690721 122111417 122112104 124809539 124810226 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 3742943 125856700 125858193 124811830 124810336 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 1910072 123942418 123946627 124811831 124816043 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 2050031 125996659 125998249 124816044 124817634 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 609033 125386440 125387625 124818819 124817635 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 1262324 124119369 124124115 124818820 124823567 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 793139 124920416 124921341 124827654 124826729 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 54054 124863580 124864610 124830436 124829406 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 2065708 122791171 122797813 124830495 124837135 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = 2472391 125270205 125272243 124839175 124837136 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 1896014 123367493 123373147 124840219 124845874 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 2009959 125383724 125387625 124850393 124846492 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 2088479 123290494 123291339 124854299 124855143 NC_060925.1 CM039034.1 97.04 True translocation 27378972 27379918 124860545 124861493 NC_060943.1 CM039034.1 96.63 True translocation 125282715 125283701 124864047 124863061 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = -25798 125301808 125308512 124870752 124864048 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = 1364587 123926784 123932985 124874988 124881193 NC_060925.1 CM039034.1 97.1 True translocation 47156903 47157406 124881458 124881961 NC_060929.1 CM039034.1 97.02 True translocation 122180607 122184237 124882066 124885692 NC_060925.1 CM039034.1 97.36 True translocation 29008397 29009007 124886560 124887171 NC_060943.1 CM039034.1 96.02 True translocation 123912794 123915352 124887172 124889729 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 2314788 126231653 126233365 124891242 124892955 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -2239669 123993697 123998838 124892956 124898097 NC_060925.1 CM039034.1 98.4 True local misassembly 124000196 124010135 124898098 124908039 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -8157 124001979 124007416 124908040 124913478 NC_060925.1 CM039034.1 97.81 True local misassembly 124002763 124005904 124914265 124917406 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -94484 123912794 123915990 124918780 124921976 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 101965 124017956 124019041 124921977 124923062 NC_060925.1 CM039034.1 98.86 True indel: indel (<= 5bp) 124019043 124020963 124923063 124924983 NC_060925.1 CM039034.1 99.22 True local misassembly 124021304 124022365 124924984 124926045 NC_060925.1 CM039034.1 98.49 True translocation 28794217 28795876 124926343 124928002 NC_060943.1 CM039034.1 97.05 True fake: not a misassembly (possible transposable element) 29639366 29639909 124928328 124928870 NC_060943.1 CM039034.1 97.24 True fake: not a misassembly (possible transposable element) 28794460 28795876 124928967 124930383 NC_060943.1 CM039034.1 96.97 True translocation 125364879 125366578 124935149 124933449 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 1342846 124018551 124021524 124935150 124938117 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = -595174 123426351 123431027 124938118 124942795 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 1495528 124927266 124932286 124948526 124943506 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 2534062 122389508 122393203 124948527 124952221 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 1080564 123473768 123474357 124952222 124952811 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = -108096 123367534 123368666 124954084 124955216 NC_060925.1 CM039034.1 97.79 True indel: indel (<= 5bp) 123368667 123369215 124955218 124955766 NC_060925.1 CM039034.1 99.27 True local misassembly 123369556 123372152 124955767 124958363 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 2812780 126185788 126187283 124959219 124960717 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 927378 125253976 125257816 124965150 124961311 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -114204 125364251 125367053 124969083 124966277 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 1379846 123977768 123983675 124969813 124975720 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 1380779 125364455 125366448 124977714 124975721 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 1322452 124035546 124041407 124978310 124984173 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -16994 124024414 124026113 124984174 124985873 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 8837 124035546 124043538 124986469 124994465 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -28551 124014988 124016427 124994466 124995905 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 21413 124037841 124043786 124995906 125001853 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -30250 124014132 124020426 125002449 125008745 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 59819 124080246 124081525 125008746 125010025 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 835637 124917753 124919232 125012095 125010616 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 2456209 122457275 122460033 125013606 125016365 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 2902465 125362726 125367053 125020925 125016593 NC_060925.1 CM039034.1 98.04 True translocation 29514199 29514730 125024439 125024970 NC_060943.1 CM039034.1 96.99 True translocation 125840766 125845579 125030627 125025813 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 1985260 123852311 123853572 125030628 125031888 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = 1517301 125370874 125375204 125036221 125031889 NC_060925.1 CM039034.1 98.43 True translocation 29514199 29514730 125039056 125039587 NC_060943.1 CM039034.1 96.99 True translocation 125842153 125845579 125043858 125040430 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 1898291 123942352 123943861 125043859 125045368 NC_060925.1 CM039034.1 96.8 True local misassembly 123943438 123947699 125045964 125050224 NC_060925.1 CM039034.1 97.28 True local misassembly 123943621 123945777 125050225 125052382 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 571027 124516805 124521215 125056790 125052383 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 501421 124012962 124013785 125058389 125059212 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = -39083 123975275 123979839 125059785 125064347 NC_060925.1 CM039034.1 96.96 True local misassembly 123981169 123981682 125065677 125066190 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -56761 123926444 123928175 125067713 125069444 NC_060925.1 CM039034.1 99.31 True relocation, inconsistency = -403809 123525696 123527662 125070774 125072738 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 482998 124011072 124015183 125073150 125077258 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -2032551 121982992 121985478 125077618 125080102 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 2117534 124103013 124103723 125080103 125080813 NC_060925.1 CM039034.1 99.05 True indel: indel (<= 5bp) 124103725 124105023 125080814 125082112 NC_060925.1 CM039034.1 96.92 True local misassembly 124105364 124109931 125082113 125086680 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -16667 124093900 124106452 125087316 125100205 NC_060925.1 CM039034.1 96.24 True local misassembly 124112017 124115693 125100669 125104345 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 1077109 125192803 125201470 125113019 125104346 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 26182 125162787 125166620 125116852 125113020 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = -447311 125609450 125610097 125117500 125116853 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 1483299 124121025 124126149 125117502 125122629 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -12575 124118500 124121900 125127555 125130954 NC_060925.1 CM039034.1 97.92 True local misassembly 124118500 124122665 125130955 125135119 NC_060925.1 CM039034.1 98.42 True translocation 28837832 28839221 125141291 125142680 NC_060943.1 CM039034.1 97.12 True translocation 124262991 124265892 125150512 125147612 NC_060925.1 CM039034.1 98.24 True translocation 29167256 29168850 125154885 125156479 NC_060943.1 CM039034.1 95.86 True translocation 123694290 123695146 125162906 125163761 NC_060925.1 CM039034.1 96.97 True local misassembly 123691389 123692665 125164764 125166040 NC_060925.1 CM039034.1 99.06 True local misassembly 123693006 123694479 125166041 125167514 NC_060925.1 CM039034.1 98.37 True indel: indel (<= 5bp) 123694481 123695585 125167515 125168619 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -1386837 122308749 122313737 125168620 125173612 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 1376301 123694290 123695146 125177864 125178719 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -24824 123671328 123672601 125179725 125180998 NC_060925.1 CM039034.1 98.82 True local misassembly 123672942 123673720 125180999 125181777 NC_060925.1 CM039034.1 98.07 True indel: indel (<= 5bp) 123673724 123674418 125181778 125182472 NC_060925.1 CM039034.1 98.99 True indel: indel (<= 5bp) 123674420 123675524 125182473 125183577 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -1366776 122308749 122313737 125183578 125188570 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -71714 122256708 122257317 125203255 125203864 NC_060925.1 CM039034.1 99.67 True relocation, inconsistency = 989822 123250237 123254640 125206962 125211365 NC_060925.1 CM039034.1 98.89 True local misassembly 123255207 123255978 125211591 125212362 NC_060925.1 CM039034.1 98.83 True translocation 29590008 29590884 125228397 125229273 NC_060943.1 CM039034.1 97.26 True translocation 124101167 124104390 125232602 125235824 NC_060925.1 CM039034.1 99.04 True relocation, inconsistency = -1758010 122346381 122347716 125235825 125237160 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 1741004 124088721 124093422 125237161 125241861 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 1070827 125164250 125171367 125248984 125241862 NC_060925.1 CM039034.1 98.3 True translocation 29198135 29199603 125248985 125250454 NC_060943.1 CM039034.1 96.7 True translocation 124927899 124929536 125252830 125251193 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 804387 124120102 124123446 125252896 125256240 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 1032174 125156364 125158355 125258232 125256241 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 1040851 124112175 124115512 125258233 125261570 NC_060925.1 CM039034.1 98.26 True translocation 29198135 29199603 125261571 125263040 NC_060943.1 CM039034.1 96.7 True translocation 124927899 124929536 125265416 125263779 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 803747 124120102 124124086 125265482 125269468 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -27209 124096878 124099865 125269469 125272455 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 13946 124113812 124114926 125272456 125273570 NC_060925.1 CM039034.1 98.65 True local misassembly 124115267 124117458 125273571 125275762 NC_060925.1 CM039034.1 99.18 True local misassembly 124120692 124124144 125275935 125279390 NC_060925.1 CM039034.1 98.16 True local misassembly 124119046 124124778 125279391 125285125 NC_060925.1 CM039034.1 98.4 True local misassembly 124121901 124122955 125288023 125289077 NC_060925.1 CM039034.1 98.65 True fake: not a misassembly (possible transposable element) 123083814 123088041 125289078 125293304 NC_060925.1 CM039034.1 98.56 True fake: not a misassembly (possible transposable element) 124124803 124125499 125293305 125294001 NC_060925.1 CM039034.1 98.8 True local misassembly 124126574 124127465 125294737 125295628 NC_060925.1 CM039034.1 99.44 True relocation, inconsistency = -40126 124087566 124088885 125295855 125297176 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 26531 124116701 124119944 125298461 125301703 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 882959 125003774 125007658 125306464 125302574 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -75138 125075164 125078109 125310212 125307267 NC_060925.1 CM039034.1 99.08 True relocation, inconsistency = 2791630 122281429 122283134 125310612 125312317 NC_060925.1 CM039034.1 98.59 True relocation, inconsistency = 2873481 125156734 125158605 125314307 125312436 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 1069524 124085618 124087209 125314308 125315899 NC_060925.1 CM039034.1 97.48 True local misassembly 124087210 124088566 125316241 125317597 NC_060925.1 CM039034.1 98.01 True local misassembly 124088905 124090799 125317598 125319492 NC_060925.1 CM039034.1 99.0 True relocation, inconsistency = 7481 124098282 124099287 125319494 125320499 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 13606 124113152 124114608 125320758 125322214 NC_060925.1 CM039034.1 98.83 True local misassembly 124115034 124118561 125322981 125326508 NC_060925.1 CM039034.1 98.78 True local misassembly 124119067 124124778 125327013 125332724 NC_060925.1 CM039034.1 98.79 True fake: not a misassembly (possible transposable element) 123108075 123109371 125332725 125334021 NC_060925.1 CM039034.1 98.81 True fake: not a misassembly (possible transposable element) 124124666 124125499 125334990 125335823 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 1755088 125881152 125884206 125336388 125339444 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 1372299 124506771 124508570 125341526 125339727 NC_060925.1 CM039034.1 98.61 True translocation 29249058 29250359 125342115 125343416 NC_060943.1 CM039034.1 97.08 True translocation 122166393 122167318 125345818 125346741 NC_060925.1 CM039034.1 96.54 True translocation 48185198 48185747 125346965 125347510 NC_060929.1 CM039034.1 96.53 True translocation 122189849 122191738 125347511 125349398 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 1556116 123747855 123750249 125349399 125351793 NC_060925.1 CM039034.1 98.37 True local misassembly 123750250 123751528 125352134 125353412 NC_060925.1 CM039034.1 97.97 True translocation 48151236 48152144 125355115 125356019 NC_060929.1 CM039034.1 96.48 True translocation 122191766 122192312 125356218 125356764 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 1465002 123657908 123661143 125357358 125360594 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -1112183 122548961 122549967 125360595 125361601 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 2382692 124932836 124933512 125362454 125361778 NC_060925.1 CM039034.1 98.38 True indel: indel (<= 5bp) 124931817 124932834 125363472 125362455 NC_060925.1 CM039034.1 99.21 True local misassembly 124930949 124931476 125364000 125363473 NC_060925.1 CM039034.1 98.86 True local misassembly 124929809 124930948 125365480 125364341 NC_060925.1 CM039034.1 98.68 True translocation 29692106 29692909 125366919 125367721 NC_060943.1 CM039034.1 98.01 True translocation 122711466 122713459 125369445 125371438 NC_060925.1 CM039034.1 95.89 True local misassembly 122713930 122715630 125371570 125373270 NC_060925.1 CM039034.1 99.12 True local misassembly 122715631 122716988 125373611 125374968 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 3126284 125843653 125844490 125376186 125375349 NC_060925.1 CM039034.1 98.45 True indel: indel (<= 5bp) 125842980 125843652 125376860 125376188 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 1333835 124503990 124507236 125382016 125378769 NC_060925.1 CM039034.1 98.09 True translocation 28807963 28809117 125382017 125383171 NC_060943.1 CM039034.1 95.95 True translocation 122735548 122736954 125383660 125385066 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 1381726 124121469 124124416 125387855 125390804 NC_060925.1 CM039034.1 99.05 True relocation, inconsistency = -2111965 122012518 122014777 125390871 125393131 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 2101769 124119861 124125043 125396446 125401629 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 2132242 126257880 126258910 125402224 125403254 NC_060925.1 CM039034.1 97.28 True local misassembly 126255851 126260682 125403255 125408088 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = -2142440 124125978 124127904 125415824 125417754 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 598056 124725961 124728955 125420749 125417755 NC_060925.1 CM039034.1 98.6 True relocation, inconsistency = 485733 124234104 124235978 125426874 125424999 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -1037128 125262389 125264610 125435716 125433496 NC_060925.1 CM039034.1 99.1 True relocation, inconsistency = 531683 124727745 124729181 125438676 125437241 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 1238591 125978813 125979657 125449717 125450561 NC_060925.1 CM039034.1 98.82 True indel: indel (<= 5bp) 125979659 125980556 125450562 125451459 NC_060925.1 CM039034.1 96.99 True local misassembly 125980897 125981813 125451460 125452376 NC_060925.1 CM039034.1 98.58 True indel: indel (<= 5bp) 125981814 125983832 125452378 125454396 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = 542683 125433090 125436337 125460431 125457190 NC_060925.1 CM039034.1 98.86 True translocation 29175280 29176475 125462725 125463921 NC_060943.1 CM039034.1 96.66 True translocation 125779471 125783088 125468929 125465311 NC_060925.1 CM039034.1 99.06 True relocation, inconsistency = 1915657 123861953 123863813 125468930 125470787 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 433830 124302265 124303934 125473939 125472270 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 948842 123348583 123353422 125473940 125478779 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 1670185 125026500 125027400 125482572 125481672 NC_060925.1 CM039034.1 98.89 True local misassembly 125024931 125026159 125483801 125482573 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 1516736 123505641 123507816 125483808 125485984 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -1251549 122256268 122260305 125485985 125490025 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 1092458 123352764 123353354 125490026 125490616 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 151271 123505915 123508188 125491906 125494179 NC_060925.1 CM039034.1 97.98 True local misassembly 123505915 123508188 125495647 125497920 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 1855525 125364812 125367009 125501218 125499019 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 1891506 123471979 123472697 125501827 125502545 NC_060925.1 CM039034.1 97.91 True local misassembly 123473215 123474270 125502724 125503779 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 1887825 125362096 125364293 125505979 125503780 NC_060925.1 CM039034.1 98.27 True translocation 29405267 29406671 125506499 125507904 NC_060943.1 CM039034.1 96.59 True translocation 125317980 125322484 125513046 125508540 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 1945512 123370675 123372467 125513047 125514839 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 132575 123505915 123508188 125515712 125517985 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 350109 123859424 123863072 125519112 125522758 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 1471054 125334127 125335123 125523755 125522759 NC_060925.1 CM039034.1 99.66 True relocation, inconsistency = 1284915 124044429 124047284 125525683 125528538 NC_060925.1 CM039034.1 98.98 True local misassembly 124047285 124048746 125528880 125530341 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 1315452 125365612 125369288 125535441 125531755 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 1995495 123367534 123368797 125536761 125538024 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 1033905 124402758 124406400 125541720 125538080 NC_060925.1 CM039034.1 97.64 True translocation 29485196 29485922 125542082 125542808 NC_060943.1 CM039034.1 97.39 True translocation 125998568 126001031 125543652 125546115 NC_060925.1 CM039034.1 98.05 True local misassembly 126003626 126005499 125548752 125550625 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -130031 125876304 125878529 125551461 125553685 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = 269190 126148555 126149211 125554521 125555177 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -43392 126106183 126106934 125555541 125556292 NC_060925.1 CM039034.1 98.8 True local misassembly 126104183 126107699 125556597 125560113 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -54127 126054095 126055417 125560636 125561959 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -178469 125876949 125877594 125561960 125562606 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 98865 125976532 125980688 125562679 125566840 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 272175 126253229 126255975 125567206 125569951 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -189554 126067094 126068063 125570624 125571593 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = 76502 126145499 126147896 125572527 125574926 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -2117089 124030808 124036309 125574927 125580424 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -1854874 122181436 122183887 125580425 125582875 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -25499 122159253 122162132 125583740 125586617 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 4079592 126241725 126244368 125586618 125589261 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -4045934 122200728 122201916 125591555 125592744 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 1957324 124159420 124162638 125596142 125592924 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 1823570 125986209 125986890 125596143 125596824 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 156738 126145499 126147896 125598695 125601094 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -2117089 124030808 124035473 125601095 125605756 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -1855506 122180331 122183887 125606120 125609674 NC_060925.1 CM039034.1 97.98 True fake: not a misassembly (possible transposable element) 125984866 125985702 125609702 125610538 NC_060925.1 CM039034.1 96.85 True fake: not a misassembly (possible transposable element) 122180331 122183210 125610539 125613416 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 4048319 126231530 126234173 125613417 125616060 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -3926293 122310190 122311105 125618370 125619285 NC_060925.1 CM039034.1 98.38 True local misassembly 122307030 122311040 125619286 125623298 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = -98229 122213646 122214834 125624133 125625322 NC_060925.1 CM039034.1 96.39 True fake: not a misassembly (possible transposable element) 124159744 124162638 125628397 125625502 NC_060925.1 CM039034.1 98.34 True fake: not a misassembly (possible transposable element) 122213646 122214834 125628894 125630083 NC_060925.1 CM039034.1 96.39 True fake: not a misassembly (possible transposable element) 124159744 124162638 125633158 125630263 NC_060925.1 CM039034.1 98.38 True fake: not a misassembly (possible transposable element) 122213646 122214834 125633655 125634844 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = 1944406 124159420 124162638 125638242 125635024 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 1942365 122213313 122214834 125640463 125641985 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = 1942373 124157387 124162638 125647422 125642165 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 85353 124067602 124070729 125648727 125651852 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 896999 124967729 124968340 125652464 125651853 NC_060925.1 CM039034.1 98.36 True indel: indel (<= 5bp) 124965434 124967728 125654763 125652469 NC_060925.1 CM039034.1 97.08 True local misassembly 124962816 124964643 125657044 125655217 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 2787723 122173576 122174415 125657503 125658342 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 3931634 126106050 126108289 125658343 125660582 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 144267 126253667 126255673 125661693 125663696 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -155379 126103131 126104986 125666533 125668386 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -226821 125878166 125878812 125668387 125669033 NC_060925.1 CM039034.1 99.07 True relocation, inconsistency = 375115 126254073 126257165 125669179 125672271 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -278294 125978872 125982819 125672272 125676216 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 131011 126113831 126114496 125676217 125676882 NC_060925.1 CM039034.1 98.34 True indel: indel (<= 5bp) 126114497 126115514 125676884 125677901 NC_060925.1 CM039034.1 98.53 True indel: stretch of mismatches 126115541 126116114 125677928 125678501 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 139810 126256684 126257987 125679261 125680564 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 559510 125693043 125695924 125684694 125681814 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 3517415 122171970 122173274 125687048 125688352 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 1950410 124124280 124126295 125688948 125690963 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 1838319 125964615 125966582 125690964 125692931 NC_060925.1 CM039034.1 98.7 True local misassembly 125966922 125968032 125692932 125694042 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 128051 126096668 126097631 125694627 125695590 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 151589 126249325 126250285 125695695 125696655 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 2074672 124170958 124174652 125700351 125696656 NC_060925.1 CM039034.1 97.78 True local misassembly 124170122 124171207 125702551 125701462 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 2078515 126249723 126251721 125702552 125704550 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -245127 126006709 126008433 125704665 125706388 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 257366 126266039 126269534 125706628 125710121 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = -28202 126241604 126244368 125710393 125713153 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -2709409 123536034 123537949 125714228 125716142 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 1454038 124991988 124994326 125718479 125716143 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 2714780 122275169 122276832 125718855 125720518 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 1258698 123536034 123537949 125721022 125722936 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 1454038 124993323 124994326 125723939 125722937 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 11560 124977030 124981762 125728670 125723940 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = 1461563 123512788 123514832 125728703 125730744 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 2532138 126046971 126049854 125730745 125733626 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = -189348 125860507 125861607 125733627 125734727 NC_060925.1 CM039034.1 98.14 True translocation 29029255 29029965 125740339 125741049 NC_060943.1 CM039034.1 96.91 True translocation 125831873 125836039 125749057 125744896 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 1818347 124007696 124013525 125749058 125754881 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = -538408 123475118 123477561 125754882 125757323 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 2367500 125845580 125846367 125758110 125757324 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 2239813 123603774 123605766 125758111 125760103 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 2303021 125910671 125913343 125761987 125764660 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -1878138 124035206 124043832 125764661 125773287 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -7477 124036356 124041407 125773288 125778339 NC_060925.1 CM039034.1 98.15 True local misassembly 124042088 124045308 125778340 125781560 NC_060925.1 CM039034.1 97.92 True local misassembly 124045648 124047440 125781561 125783353 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = -1785192 122262249 122265819 125783354 125786926 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 3649398 125915512 125920681 125787221 125792388 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 1647099 124263112 124268264 125797687 125792537 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 1837644 126105909 126107359 125797688 125799140 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 105489 126212869 126216515 125799161 125802803 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 2055061 124154376 124156965 125806229 125803646 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = 2127776 122024320 122026582 125806230 125808492 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = 3982423 126009006 126011807 125808493 125811242 NC_060925.1 CM039034.1 95.86 True local misassembly 126013847 126015541 125811243 125812937 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 20335 126035877 126036750 125812938 125813810 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 1872198 124162472 124163619 125815017 125813870 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = 1945121 126109244 126112066 125815521 125818342 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = -99214 126012948 126015565 125818438 125821055 NC_060925.1 CM039034.1 97.75 True local misassembly 126012948 126015541 125821151 125823744 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -102793 125913344 125918515 125824340 125829498 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 213852 126132368 126135112 125829499 125832189 NC_060925.1 CM039034.1 96.07 True relocation, inconsistency = -3955703 122179410 122180806 125832190 125833587 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 3681701 125863018 125865424 125834098 125836501 NC_060925.1 CM039034.1 96.8 True local misassembly 125866077 125867841 125837154 125838914 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 110417 125978432 125984101 125839088 125844706 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = 162517 126146929 126149877 125845017 125847961 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -145958 126003920 126005516 125847962 125849558 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -146006 125859992 125863893 125850040 125853886 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 1697511 124158071 124162098 125858243 125854269 NC_060925.1 CM039034.1 96.35 True relocation, inconsistency = 1819681 125981780 125982303 125858244 125858765 NC_060925.1 CM039034.1 96.87 True local misassembly 125978227 125982727 125858766 125863264 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -124352 125859992 125862808 125864881 125867692 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 257398 126120207 126121064 125867693 125868550 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 63013 126184078 126185106 125868551 125869579 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -86690 126098674 126101992 125869837 125873155 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 150281 126252274 126253278 125873156 125874160 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -83881 126171222 126174092 125875985 125878855 NC_060925.1 CM039034.1 97.25 True translocation 25996926 25997670 125878856 125879599 NC_060943.1 CM039034.1 96.34 True local misassembly 25996724 25997670 125881373 125882318 NC_060943.1 CM039034.1 96.52 True translocation 126209459 126210193 125882319 125883052 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 40427 126252826 126256263 125885258 125888693 NC_060925.1 CM039034.1 96.57 True relocation, inconsistency = -4423148 121833116 121834102 125888694 125889678 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 426839 122260942 122263795 125889679 125892531 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 3988156 126252826 126256511 125893406 125897090 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -282706 125973806 125974575 125897091 125897860 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = -2298562 123677338 123680526 125899185 125902373 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -356571 123323956 123324590 125902374 125903008 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = -1202938 122121653 122124202 125903009 125905559 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 4083352 126208820 126209465 125906825 125907470 NC_060925.1 CM039034.1 98.3 True local misassembly 126209322 126210266 125907667 125908611 NC_060925.1 CM039034.1 97.52 True translocation 28555812 28557731 125908612 125910532 NC_060943.1 CM039034.1 96.46 True translocation 126254409 126256511 125910633 125912732 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 1822643 124426482 124431393 125918015 125913105 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 2234434 122190025 122192047 125918016 125920039 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -56433 122136001 122137675 125920426 125922100 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 3953159 126091952 126093595 125923218 125924860 NC_060925.1 CM039034.1 97.78 True fake: not a misassembly (possible transposable element) 126190140 126192815 125924861 125927535 NC_060925.1 CM039034.1 97.42 True fake: not a misassembly (possible transposable element) 126092532 126093595 125927536 125928598 NC_060925.1 CM039034.1 97.57 True fake: not a misassembly (possible transposable element) 126190140 126192968 125928599 125931426 NC_060925.1 CM039034.1 97.53 True fake: not a misassembly (possible transposable element) 126092685 126093884 125931427 125932626 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1253507 124836468 124838884 125935330 125932920 NC_060925.1 CM039034.1 97.27 True fake: not a misassembly (possible transposable element) 125993630 125998560 125935668 125940597 NC_060925.1 CM039034.1 96.27 True fake: not a misassembly (possible transposable element) 124836586 124837318 125941327 125940598 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 626785 124207728 124209800 125943404 125941328 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 2013046 122193332 122193927 125943405 125943999 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = 3762553 125956481 125960997 125944000 125948520 NC_060925.1 CM039034.1 97.15 True translocation 28015210 28016604 125948521 125949914 NC_060943.1 CM039034.1 96.43 True translocation 126009006 126010338 125951141 125952475 NC_060925.1 CM039034.1 97.68 True local misassembly 126011384 126014499 125953520 125956630 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 88687 126103187 126107627 125956631 125961069 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -3845974 122261654 122262770 125961070 125962183 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 3956556 126219791 126220344 125962648 125963201 NC_060925.1 CM039034.1 98.19 True indel: indel (<= 5bp) 126220346 126220961 125963202 125963817 NC_060925.1 CM039034.1 97.73 True local misassembly 126221302 126223891 125963818 125966407 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 2046079 124168609 124175013 125973027 125966617 NC_060925.1 CM039034.1 97.38 True translocation 29533136 29533983 125973338 125974185 NC_060943.1 CM039034.1 96.82 True translocation 125867810 125871024 125974908 125978123 NC_060925.1 CM039034.1 97.76 True local misassembly 125875590 125876376 125978271 125979057 NC_060925.1 CM039034.1 98.73 True local misassembly 125876717 125878001 125979058 125980342 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = 375454 126253667 126255833 125980554 125982718 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -30243 126225591 126226651 125982719 125983779 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = -36701 126189951 126193156 125983780 125986978 NC_060925.1 CM039034.1 97.07 True local misassembly 126189951 126192009 125987173 125989230 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -4213087 121978923 121981763 125989231 125992077 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 4233490 126215792 126217874 125992616 125994698 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 1653235 124555399 124562054 126001858 125995201 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 421057 124132914 124134341 126003286 126001859 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -272837 124402492 124403206 126006545 126005831 NC_060925.1 CM039034.1 97.65 True translocation 25929212 25930636 126006546 126007969 NC_060943.1 CM039034.1 96.7 True relocation, inconsistency = 1709346 27640907 27642592 126008894 126010581 NC_060943.1 CM039034.1 96.92 True translocation 126123849 126126643 126011945 126014734 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -114505 126012139 126012775 126014735 126015369 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 133437 126146213 126148865 126015370 126017977 NC_060925.1 CM039034.1 95.56 True translocation 29546606 29547950 126019028 126020373 NC_060943.1 CM039034.1 95.91 True translocation 122275544 122277463 126020435 126022354 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 3935837 126213370 126216559 126022424 126025613 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 483239 125727028 125729919 126028715 126025825 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = 685953 125038338 125039970 126031452 126029820 NC_060925.1 CM039034.1 97.98 True local misassembly 125036384 125037957 126033065 126031492 NC_060925.1 CM039034.1 96.95 True local misassembly 125038338 125039970 126035531 126033899 NC_060925.1 CM039034.1 98.1 True local misassembly 125036384 125037957 126037144 126035571 NC_060925.1 CM039034.1 97.2 True translocation 29581622 29582548 126037721 126038648 NC_060943.1 CM039034.1 96.77 True translocation 125862975 125864410 126041384 126042819 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 1687416 124172342 124175558 126046037 126042820 NC_060925.1 CM039034.1 97.79 True translocation 27206141 27207717 126046902 126048483 NC_060943.1 CM039034.1 96.33 True translocation 122082335 122083131 126049923 126050720 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -203373 121882099 121884401 126053061 126055368 NC_060925.1 CM039034.1 97.49 True translocation 29223877 29224744 126055369 126056238 NC_060943.1 CM039034.1 96.0 True relocation, inconsistency = -3364284 25865535 25867503 126061313 126063281 NC_060943.1 CM039034.1 95.68 True relocation, inconsistency = 3880080 29748600 29749371 126064298 126065069 NC_060943.1 CM039034.1 96.63 True relocation, inconsistency = -530408 29221389 29223198 126067495 126069304 NC_060943.1 CM039034.1 95.75 True translocation 126248678 126249355 126069305 126069984 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 2076835 124169967 124171253 126071860 126070574 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 2275691 121892234 121893146 126072990 126073902 NC_060925.1 CM039034.1 95.95 True translocation 29471266 29472885 126074218 126075839 NC_060943.1 CM039034.1 95.87 True local misassembly 29473673 29475729 126076625 126078687 NC_060943.1 CM039034.1 96.12 True translocation 126107727 126108308 126078688 126079269 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 1944145 124160862 124162613 126081990 126080238 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -129761 124287793 124289687 126084820 126082926 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 1689419 125980273 125983704 126085987 126089418 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -116534 125867210 125871632 126089458 126093832 NC_060925.1 CM039034.1 96.5 True translocation 27102892 27104227 126093833 126095164 NC_060943.1 CM039034.1 96.17 True translocation 126189951 126193156 126096161 126099367 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -211345 125982511 125987097 126100067 126104646 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = 222574 126209672 126210738 126104647 126105714 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -4033719 122184071 122187503 126112766 126116198 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 3677619 125865123 125865946 126116199 126117023 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 133135 125999926 126001123 126117868 126119064 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 32808 126034822 126036893 126119955 126122025 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 66316 126103210 126107627 126122026 126126437 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 1939968 124161112 124163241 126128568 126126438 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 1870737 126034145 126037084 126128735 126131722 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = 216307 126253392 126258303 126131723 126136588 NC_060925.1 CM039034.1 96.44 True translocation 48693091 48694149 126136974 126138032 NC_060929.1 CM039034.1 96.6 True translocation 125859992 125861095 126138204 126139308 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 278371 126139769 126142131 126139611 126141971 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 41362 126184078 126185120 126142556 126143598 NC_060925.1 CM039034.1 98.08 True local misassembly 126190272 126193143 126144674 126147545 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 60200 126253809 126255307 126148011 126149509 NC_060925.1 CM039034.1 98.07 True indel: indel (<= 5bp) 126255309 126256683 126149510 126150884 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -239654 126017697 126019940 126151552 126153792 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -3791951 122228268 122229115 126154071 126154919 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 3977636 126207290 126208274 126155458 126156441 NC_060925.1 CM039034.1 97.63 True local misassembly 126204535 126208622 126156442 126160527 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -242617 125966881 125970360 126161403 126164881 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 235140 126207120 126209044 126166501 126168424 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 394681 125811010 125812438 126169853 126168425 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = 3623849 122183077 122184957 126170060 126171933 NC_060925.1 CM039034.1 96.73 True relocation, inconsistency = 3787021 125971979 125976368 126171934 126176322 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -19712 125956657 125957324 126176323 126176990 NC_060925.1 CM039034.1 96.92 True local misassembly 125959407 125960983 126179073 126180648 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = 289840 126250824 126251958 126180649 126181783 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -4112908 122139549 122140727 126182282 126183459 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 3834958 125978192 125980008 126185966 126187784 NC_060925.1 CM039034.1 97.58 True local misassembly 125984167 125985786 126189564 126191184 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 19907 126006674 126009767 126192165 126195260 NC_060925.1 CM039034.1 97.8 True fake: not a misassembly (possible transposable element) 122166477 122167421 126195261 126196206 NC_060925.1 CM039034.1 96.27 True fake: not a misassembly (possible transposable element) 126005616 126009767 126196207 126200360 NC_060925.1 CM039034.1 97.71 True local misassembly 126005616 126009767 126201307 126205460 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -3843291 122166477 122168427 126205461 126207412 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 3810811 125979585 125981830 126207759 126210000 NC_060925.1 CM039034.1 96.9 True local misassembly 125982511 125987357 126210001 126214850 NC_060925.1 CM039034.1 96.83 True translocation 29574778 29575707 126214851 126215780 NC_060943.1 CM039034.1 96.24 True translocation 125876171 125878213 126215781 126217817 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = 104297 125982511 125987357 126217818 126222667 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 14226 126001584 126002149 126222668 126223236 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 136395 126139769 126143202 126224461 126227892 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 1982981 124154816 124156787 126229864 126227893 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 1841456 125998244 126001130 126229865 126232752 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -4069194 121932168 121937010 126232984 126237825 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 4043409 125980455 125982170 126237861 126239576 NC_060925.1 CM039034.1 98.14 True local misassembly 125982511 125984168 126239577 126241234 NC_060925.1 CM039034.1 97.71 True translocation 29212168 29213188 126241235 126242255 NC_060943.1 CM039034.1 96.9 True local misassembly 29214062 29214967 126243128 126244033 NC_060943.1 CM039034.1 96.91 True translocation 126105754 126107273 126244715 126246236 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -129996 125978227 125982727 126247186 126251680 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = 271836 126254564 126255514 126251681 126252631 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 2091933 124159214 124162630 126256047 126252632 NC_060925.1 CM039034.1 97.92 True translocation 27904680 27905327 126256048 126256694 NC_060943.1 CM039034.1 96.75 True translocation 122106493 122108027 126256695 126258229 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 4144589 126253325 126256943 126258938 126262551 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = -29225 126227719 126229174 126262552 126264007 NC_060925.1 CM039034.1 98.24 True fake: not a misassembly (possible transposable element) 121894189 121894991 126264008 126264810 NC_060925.1 CM039034.1 97.04 True fake: not a misassembly (possible transposable element) 126223185 126224320 126264811 126265945 NC_060925.1 CM039034.1 97.71 True local misassembly 126223810 126227222 126266455 126269867 NC_060925.1 CM039034.1 97.92 True local misassembly 126223832 126229174 126270216 126275559 NC_060925.1 CM039034.1 97.7 True local misassembly 126227291 126227940 126275709 126276358 NC_060925.1 CM039034.1 99.08 True indel: indel (<= 5bp) 126227941 126229187 126276360 126277606 NC_060925.1 CM039034.1 98.8 True local misassembly 126229724 126231196 126277802 126279274 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -4068375 122163199 122165527 126279652 126281978 NC_060925.1 CM039034.1 96.22 True local misassembly 122168299 122169606 126284745 126286052 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 4061924 126233410 126235213 126287932 126289735 NC_060925.1 CM039034.1 98.07 True fake: not a misassembly (possible transposable element) 125964742 125967794 126289736 126292785 NC_060925.1 CM039034.1 96.76 True fake: not a misassembly (possible transposable element) 126235992 126236726 126292891 126293626 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -4174136 122063728 122068771 126294764 126299806 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 4041140 126109912 126112042 126299807 126301937 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -99555 126013079 126015675 126302529 126305129 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 197285 126213370 126215752 126305539 126307921 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1998436 124211797 124214933 126311063 126307922 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 2348233 121856668 121860542 126314085 126317958 NC_060925.1 CM039034.1 97.4 True translocation 27411299 27412084 126317959 126318742 NC_060943.1 CM039034.1 96.58 True translocation 125858863 125861422 126320720 126323279 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 1675899 124180159 124182694 126326083 126323549 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 1927725 126112299 126114160 126327963 126329825 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = -233266 125883124 125885627 126332055 126334559 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 1701254 124180573 124181869 126335856 126334560 NC_060925.1 CM039034.1 97.49 True fake: not a misassembly (possible transposable element) 121932704 121934718 126336721 126338738 NC_060925.1 CM039034.1 97.18 True fake: not a misassembly (possible transposable element) 124177083 124178029 126339685 126338739 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 1829794 126009015 126011198 126340877 126343063 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 178534 126191137 126192886 126344468 126346217 NC_060925.1 CM039034.1 97.77 True local misassembly 126192699 126193397 126347730 126348427 NC_060925.1 CM039034.1 97.28 True local misassembly 126188766 126189684 126350594 126351513 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -81013 126109900 126112042 126352742 126354884 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 100395 126213370 126216296 126355817 126358743 NC_060925.1 CM039034.1 97.87 True fake: not a misassembly (possible transposable element) 126104353 126107699 126358744 126362093 NC_060925.1 CM039034.1 97.19 True fake: not a misassembly (possible transposable element) 126214889 126216587 126362094 126363791 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 2060212 124153644 124154663 126364824 126363805 NC_060925.1 CM039034.1 96.76 True local misassembly 124151859 124153643 126366949 126365165 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 1950417 126104201 126107699 126367090 126370594 NC_060925.1 CM039034.1 97.57 True translocation 49340980 49343096 126370595 126372712 NC_060929.1 CM039034.1 95.56 True translocation 126094284 126095064 126372713 126373494 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 118305 126213370 126214052 126373495 126374177 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 39407 126253460 126260002 126374178 126380721 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = -251592 126008411 126011198 126380722 126383514 NC_060925.1 CM039034.1 97.43 True local misassembly 126006223 126011126 126384314 126389223 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -4048964 121962325 121963933 126389386 126390995 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = 4138670 126102695 126107627 126391087 126396024 NC_060925.1 CM039034.1 97.51 True local misassembly 126106269 126106793 126396025 126396549 NC_060925.1 CM039034.1 97.54 True local misassembly 126102718 126105436 126396550 126399269 NC_060925.1 CM039034.1 97.58 True local misassembly 126102718 126108308 126399270 126404864 NC_060925.1 CM039034.1 97.77 True local misassembly 126102718 126108380 126405390 126411055 NC_060925.1 CM039034.1 97.35 True local misassembly 126104385 126105805 126411138 126412558 NC_060925.1 CM039034.1 97.52 True fake: not a misassembly (possible transposable element) 126001588 126007122 126412559 126418193 NC_060925.1 CM039034.1 95.94 True fake: not a misassembly (possible transposable element) 126106340 126108380 126418194 126420234 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = -99222 126009415 126011551 126420491 126422627 NC_060925.1 CM039034.1 99.06 True local misassembly 126011552 126013265 126422968 126424681 NC_060925.1 CM039034.1 99.07 True relocation, inconsistency = 159891 126174464 126177485 126425989 126429013 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 29919 126209633 126212528 126431242 126434140 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -21419 126191110 126192968 126434141 126435998 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -217121 125976398 125977074 126436549 126437225 NC_060925.1 CM039034.1 98.52 True local misassembly 125977415 125978191 126437226 126438002 NC_060925.1 CM039034.1 98.07 True indel: indel (<= 5bp) 125978684 125983832 126438500 126443648 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = 49123 126032956 126034628 126443649 126445320 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 178548 126214393 126218877 126446537 126451026 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = -114996 126103882 126107699 126451027 126454846 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 105490 126213370 126218877 126455027 126460539 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -212856 126006288 126010772 126460806 126465290 NC_060925.1 CM039034.1 97.06 True local misassembly 126007038 126009005 126465291 126467258 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 225084 126234090 126239950 126467259 126473119 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = -9515 126230436 126233374 126473120 126476058 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -4103050 122130499 122135107 126476233 126480840 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = 4111206 126246314 126248264 126480841 126482791 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -2367463 123881617 123882772 126483607 126484761 NC_060925.1 CM039034.1 98.1 True translocation 25947535 25948665 126484927 126486056 NC_060943.1 CM039034.1 96.46 True translocation 124086550 124087722 126487665 126488835 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 2155378 126244296 126248265 126490031 126494000 NC_060925.1 CM039034.1 97.46 True translocation 29628762 29629526 126494001 126494766 NC_060943.1 CM039034.1 96.8 True relocation, inconsistency = 86638 29716219 29717489 126494821 126496091 NC_060943.1 CM039034.1 97.56 True translocation 122367219 122369407 126501501 126503686 NC_060925.1 CM039034.1 97.3 True translocation 29440217 29441656 126504286 126505724 NC_060943.1 CM039034.1 96.94 True translocation 126092540 126093226 126506510 126507196 NC_060925.1 CM039034.1 98.11 True indel: indel (<= 5bp) 126093228 126093905 126507197 126507874 NC_060925.1 CM039034.1 96.76 True indel: indel (<= 5bp) 126093907 126095258 126507875 126509226 NC_060925.1 CM039034.1 98.0 True local misassembly 126095435 126096533 126509745 126510843 NC_060925.1 CM039034.1 99.18 True translocation 29402166 29403404 126510943 126512180 NC_060943.1 CM039034.1 96.85 True translocation 126226955 126229769 126512776 126515590 NC_060925.1 CM039034.1 97.73 True translocation 29440221 29441656 126517198 126518632 NC_060943.1 CM039034.1 96.94 True translocation 124154744 124158661 126522713 126518793 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -59423 124213046 124214166 126523834 126522714 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 2057306 122152791 122154229 126525345 126526781 NC_060925.1 CM039034.1 96.32 True translocation 27364001 27365487 126527844 126529330 NC_060943.1 CM039034.1 96.5 True translocation 124701229 124705392 126534267 126530105 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 1171115 123522978 123529516 126534865 126541402 NC_060925.1 CM039034.1 97.45 True translocation 29639366 29640229 126542660 126543522 NC_060943.1 CM039034.1 96.99 True translocation 124214511 124216274 126546164 126544400 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -45858 124252675 124256843 126553860 126549690 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -36376 124284076 124288332 126558834 126554579 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -602689 124883801 124886764 126561802 126558835 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 674378 124208152 124209422 126563077 126561803 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = -24768 124230797 124232919 126565200 126563078 NC_060925.1 CM039034.1 98.68 True local misassembly 124231273 124232919 126567103 126565457 NC_060925.1 CM039034.1 99.09 True local misassembly 124229021 124230201 126569355 126568175 NC_060925.1 CM039034.1 99.24 True translocation 29589030 29592450 126569463 126572876 NC_060943.1 CM039034.1 96.05 True translocation 124202200 124204404 126575820 126573617 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 691690 123507883 123509463 126576867 126578447 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -1481097 122028367 122028888 126578448 126578969 NC_060925.1 CM039034.1 95.99 True relocation, inconsistency = 135730 122165309 122168507 126579660 126582857 NC_060925.1 CM039034.1 96.81 True translocation 27813672 27814949 126582858 126584136 NC_060943.1 CM039034.1 96.99 True relocation, inconsistency = 1910394 29726066 29728640 126584859 126587434 NC_060943.1 CM039034.1 95.51 True translocation 122165264 122168261 126587435 126590432 NC_060925.1 CM039034.1 96.56 True local misassembly 122165264 122168261 126591515 126594512 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 3149191 125317726 125319638 126596629 126594717 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 933727 126253366 126255673 126596630 126598937 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -394144 125863396 125864069 126600804 126601478 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 241437 126105507 126110347 126601479 126606320 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 146596 126256944 126257623 126606321 126606997 NC_060925.1 CM039034.1 96.08 True translocation 28446785 28448266 126607308 126608789 NC_060943.1 CM039034.1 96.9 True translocation 126003003 126003792 126611011 126611800 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 249843 126253809 126255673 126611974 126613838 NC_060925.1 CM039034.1 98.5 True relocation, inconsistency = 2095754 124154460 124157685 126617433 126614208 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 1946496 126105507 126110347 126618759 126623600 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 1853975 124250852 124251531 126624277 126623601 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = 1843961 126096668 126097624 126625453 126626409 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = -3945677 122152791 122154302 126627253 126628763 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 2006624 124161796 124165025 126632864 126629633 NC_060925.1 CM039034.1 96.75 True relocation, inconsistency = 1841091 126006676 126010362 126633424 126637112 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 1024913 124977030 124981762 126641844 126637113 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 1263857 126245620 126248264 126641845 126644490 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -2162511 124086550 124087722 126645287 126646457 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 308547 124397465 124399796 126649984 126647653 NC_060925.1 CM039034.1 97.0 True translocation 26291340 26292117 126650699 126651476 NC_060943.1 CM039034.1 97.69 True translocation 126274187 126275056 126651718 126652587 NC_060925.1 CM039034.1 97.36 True local misassembly 126281429 126283303 126652840 126654712 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 2117369 124162740 124163402 126656031 126655370 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -706619 124866369 124869358 126659019 126656032 NC_060925.1 CM039034.1 96.19 True relocation, inconsistency = 1124974 126002158 126003526 126666845 126668213 NC_060925.1 CM039034.1 98.69 True local misassembly 126003918 126004656 126668314 126669052 NC_060925.1 CM039034.1 97.56 True indel: indel (<= 5bp) 126004657 126005516 126669054 126669913 NC_060925.1 CM039034.1 98.6 True relocation, inconsistency = 1786183 124212560 124214049 126675831 126674338 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 1716287 125930337 125935050 126675832 126680549 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 1644687 124283815 124285649 126682384 126680550 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 1642744 125928394 125929317 126682385 126683307 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -3648381 122280937 122285092 126683308 126687461 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 2000539 124285703 124286555 126688313 126687462 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 1641650 125928206 125929741 126688314 126689849 NC_060925.1 CM039034.1 98.5 True relocation, inconsistency = 1694351 124227743 124233409 126695966 126690295 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 1967372 122259274 122260370 126695967 126697062 NC_060925.1 CM039034.1 97.72 True translocation 27836414 27840968 126698300 126702857 NC_060943.1 CM039034.1 96.34 True translocation 84187674 84188841 126705548 126704382 NC_060930.1 CM039034.1 99.74 True translocation 27897782 27898754 126706146 126707122 NC_060943.1 CM039034.1 96.1 True translocation 125446961 125451315 126711477 126707123 NC_060925.1 CM039034.1 96.72 True translocation 28374172 28375878 126711478 126713184 NC_060943.1 CM039034.1 96.49 True translocation 125979601 125980124 126715414 126715937 NC_060925.1 CM039034.1 99.05 True local misassembly 125980227 125981618 126716330 126717721 NC_060925.1 CM039034.1 97.34 True fake: not a misassembly (possible transposable element) 29115366 29115946 126717998 126718576 NC_060943.1 CM039034.1 97.25 True fake: not a misassembly (possible transposable element) 125982982 125985054 126719084 126721156 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -122309 125863048 125864069 126721459 126722481 NC_060925.1 CM039034.1 96.86 True fake: not a misassembly (possible transposable element) 125422792 125425694 126725382 126722482 NC_060925.1 CM039034.1 96.87 True fake: not a misassembly (possible transposable element) 125863048 125864069 126726554 126727576 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 103901 125755932 125759146 126730788 126727577 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = 222293 125981884 125984549 126731233 126733901 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = -3823049 122161501 122165532 126733902 126737933 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 3843968 126010670 126013846 126739103 126742280 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = -142554 125871293 125872940 126742281 126743927 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 173371 126046962 126048318 126744578 126745934 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 83299 126131618 126134919 126745935 126749234 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = -32226 126102694 126107968 126749235 126754510 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 105829 126214393 126218877 126755106 126759595 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 2044005 124168395 124170387 126761592 126759596 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 2084569 122083080 122083779 126761593 126762292 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 3923919 126007699 126010098 126762293 126764694 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1846148 124160221 124161435 126766024 126764810 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 2075988 122080375 122084232 126766025 126769882 NC_060925.1 CM039034.1 97.56 True translocation 28858612 28859879 126769893 126771160 NC_060943.1 CM039034.1 96.53 True translocation 122016138 122016732 126771161 126771755 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 4223474 126240207 126242117 126771756 126773666 NC_060925.1 CM039034.1 98.69 True local misassembly 126242118 126243780 126773939 126775601 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -34308 126209534 126212535 126775663 126778664 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -4297665 121916518 121917674 126780312 126781468 NC_060925.1 CM039034.1 98.27 True local misassembly 121917767 121918860 126781906 126782999 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 2993689 124915076 124918992 126789442 126785526 NC_060925.1 CM039034.1 97.24 True translocation 29573123 29574868 126790038 126791783 NC_060943.1 CM039034.1 96.21 True translocation 125911351 125916648 126791784 126797082 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 1684789 124222403 124226467 126801256 126797177 NC_060925.1 CM039034.1 98.4 True local misassembly 124220619 124226467 126807119 126801257 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -1457205 125674509 125677388 126810434 126807555 NC_060925.1 CM039034.1 97.44 True local misassembly 125675529 125678247 126813153 126810435 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 1449061 124220964 124226467 126818670 126813154 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 57717 124159768 124163246 126822148 126818671 NC_060925.1 CM039034.1 97.78 True translocation 29666615 29667592 126822372 126823348 NC_060943.1 CM039034.1 97.42 True translocation 124229143 124230201 126824408 126823349 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 65177 124159768 124163965 126828605 126824409 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1800129 122356225 122359638 126828606 126832021 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 1167251 123526890 123529498 126832022 126834627 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 2434182 125963681 125968799 126834628 126839747 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -69643 125899157 125900174 126839748 126840767 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 29566 125930337 125933809 126841364 126844840 NC_060925.1 CM039034.1 98.59 True relocation, inconsistency = 1706998 124222563 124223338 126845616 126844841 NC_060925.1 CM039034.1 98.44 True translocation 28882159 28885565 126845698 126849100 NC_060943.1 CM039034.1 95.89 True translocation 122165264 122168507 126849408 126852650 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = 9857 122179515 122180860 126853801 126855146 NC_060925.1 CM039034.1 97.85 True translocation 29418317 29420380 126857882 126859947 NC_060943.1 CM039034.1 96.09 True translocation 122165264 122168261 126859948 126862945 NC_060925.1 CM039034.1 96.73 True translocation 27809689 27810887 126862946 126864144 NC_060943.1 CM039034.1 97.0 True translocation 125979593 125982193 126864145 126866745 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -119592 125862602 125865850 126866746 126869989 NC_060925.1 CM039034.1 96.59 True local misassembly 125863132 125865157 126869990 126872015 NC_060925.1 CM039034.1 97.18 True translocation 29600025 29601161 126872674 126873812 NC_060943.1 CM039034.1 96.75 True local misassembly 29599704 29600651 126876093 126877040 NC_060943.1 CM039034.1 96.62 True translocation 124545672 124546665 126878721 126877727 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 1702010 126248710 126250059 126878756 126880106 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -4248955 122001105 122002803 126880107 126881803 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 3872144 125874948 125878189 126881804 126885045 NC_060925.1 CM039034.1 98.03 True fake: not a misassembly (possible transposable element) 126248884 126249718 126885046 126885882 NC_060925.1 CM039034.1 98.23 True fake: not a misassembly (possible transposable element) 125874948 125878189 126885883 126889124 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 370694 126248884 126250236 126889125 126890478 NC_060925.1 CM039034.1 97.84 True local misassembly 126249723 126250399 126891323 126891998 NC_060925.1 CM039034.1 97.98 True fake: not a misassembly (possible transposable element) 125874948 125878189 126891999 126895240 NC_060925.1 CM039034.1 97.96 True fake: not a misassembly (possible transposable element) 126248884 126249718 126895241 126896077 NC_060925.1 CM039034.1 98.23 True fake: not a misassembly (possible transposable element) 125874948 125878189 126896078 126899319 NC_060925.1 CM039034.1 98.03 True fake: not a misassembly (possible transposable element) 126248884 126250236 126899320 126900673 NC_060925.1 CM039034.1 97.65 True local misassembly 126249723 126251758 126901518 126903552 NC_060925.1 CM039034.1 98.08 True fake: not a misassembly (possible transposable element) 125874948 125877981 126903553 126906587 NC_060925.1 CM039034.1 98.02 True fake: not a misassembly (possible transposable element) 126249762 126253113 126906655 126910006 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -119463 126135694 126136263 126912050 126912614 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = -265844 125870420 125871715 126912615 126913911 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -1872711 124000536 124001638 126915443 126916547 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 1975999 125979814 125981813 126918724 126920723 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 222911 126204725 126205530 126920724 126921529 NC_060925.1 CM039034.1 98.58 True translocation 25897601 25899178 126921569 126923141 NC_060943.1 CM039034.1 95.37 True relocation, inconsistency = 362816 26262468 26264218 126923615 126925364 NC_060943.1 CM039034.1 96.29 True translocation 126190934 126193751 126925960 126928774 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -4218526 121975478 121979496 126929027 126933038 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 4272895 126253460 126256263 126934107 126936911 NC_060925.1 CM039034.1 97.54 True local misassembly 126256860 126258898 126937507 126939542 NC_060925.1 CM039034.1 98.08 True local misassembly 126256860 126259413 126939543 126942094 NC_060925.1 CM039034.1 98.04 True local misassembly 126257375 126259088 126942095 126943806 NC_060925.1 CM039034.1 98.04 True local misassembly 126253310 126256513 126943807 126947005 NC_060925.1 CM039034.1 97.6 True local misassembly 126258214 126258898 126947006 126947690 NC_060925.1 CM039034.1 98.08 True local misassembly 126256860 126259413 126947691 126950242 NC_060925.1 CM039034.1 98.08 True local misassembly 126257375 126259413 126950243 126952279 NC_060925.1 CM039034.1 98.0 True local misassembly 126256710 126259088 126952975 126955345 NC_060925.1 CM039034.1 97.29 True local misassembly 126256710 126260251 126955346 126958883 NC_060925.1 CM039034.1 97.15 True fake: not a misassembly (possible transposable element) 126114665 126116468 126958884 126960687 NC_060925.1 CM039034.1 97.64 True fake: not a misassembly (possible transposable element) 126256750 126260878 126961161 126965284 NC_060925.1 CM039034.1 97.05 True local misassembly 126254420 126256513 126965285 126967375 NC_060925.1 CM039034.1 97.77 True local misassembly 126253460 126255239 126968061 126969836 NC_060925.1 CM039034.1 98.1 True local misassembly 126252520 126255630 126969837 126972944 NC_060925.1 CM039034.1 97.59 True local misassembly 126253934 126255348 126972945 126974357 NC_060925.1 CM039034.1 98.31 True local misassembly 126253310 126256513 126974358 126977556 NC_060925.1 CM039034.1 97.44 True local misassembly 126258214 126258898 126977557 126978241 NC_060925.1 CM039034.1 97.17 True local misassembly 126253460 126256513 126978242 126981290 NC_060925.1 CM039034.1 98.1 True fake: not a misassembly (possible transposable element) 126188346 126189236 126981763 126982653 NC_060925.1 CM039034.1 98.74 True fake: not a misassembly (possible transposable element) 126253460 126256303 126982654 126985492 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -63204 126193102 126193751 126985495 126986144 NC_060925.1 CM039034.1 96.92 True local misassembly 126189960 126192877 126988131 126991047 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 2018038 124167912 124170125 126995058 126992844 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 1938274 126108697 126112042 126995356 126998701 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 167664 126280209 126283239 126999204 127002237 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -176834 126106872 126112042 127002704 127007874 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -9801 126103138 126104422 127008771 127010055 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 148632 126253055 126256278 127010056 127013277 NC_060925.1 CM039034.1 97.52 True fake: not a misassembly (possible transposable element) 124180315 124181815 127017255 127015755 NC_060925.1 CM039034.1 98.0 True fake: not a misassembly (possible transposable element) 126254513 126256278 127017627 127019392 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 2073618 124176879 124178570 127023408 127021717 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 1911648 122258715 122260987 127027652 127029921 NC_060925.1 CM039034.1 97.36 True fake: not a misassembly (possible transposable element) 29411854 29412393 127030196 127030735 NC_060943.1 CM039034.1 97.22 True fake: not a misassembly (possible transposable element) 122258715 122260987 127033427 127035696 NC_060925.1 CM039034.1 97.4 True translocation 29411854 29412393 127035971 127036510 NC_060943.1 CM039034.1 97.22 True translocation 122148711 122151266 127037637 127040191 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 2847564 124999949 125003242 127044607 127041310 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 1094380 126098775 126102389 127045760 127049373 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = -109613 125993775 125996954 127050372 127053551 NC_060925.1 CM039034.1 96.29 True relocation, inconsistency = 208689 126205644 126206909 127053552 127054817 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -347600 125859514 125862470 127055022 127057977 NC_060925.1 CM039034.1 96.96 True indel: stretch of mismatches 125862641 125864411 127058148 127059919 NC_060925.1 CM039034.1 95.42 True local misassembly 125866790 125870513 127059920 127063593 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = -10198 125860316 125861095 127063594 127064373 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 183911 126045309 126047671 127064676 127067036 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 135822 126184078 126185120 127067621 127068663 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 67282 126253460 126257623 127069721 127073830 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = -391769 125866789 125868478 127074765 127076400 NC_060925.1 CM039034.1 95.09 True relocation, inconsistency = 337407 126206575 126210830 127077090 127081347 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = -4380678 121832560 121834890 127083755 127086085 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 1900357 123735248 123736913 127086086 127087751 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 2222073 125961588 125962803 127090353 127091568 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = 244316 126207120 126209113 127091569 127093561 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 1364867 124839510 124840922 127096301 127094892 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 3004255 121832560 121834781 127096666 127098887 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 4371844 126206626 126209113 127098888 127101374 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 393576 125810307 125811579 127104114 127102845 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 3975052 121832560 121834781 127104479 127106700 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 4371844 126206626 126209113 127106701 127109187 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 504742 125695409 125698987 127115662 127112084 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = 1513230 124181250 124182178 127116590 127115663 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 1923072 126105507 126108763 127116847 127120104 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 1695703 124405502 124409460 127124406 127120448 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 1473727 125883188 125883958 127124407 127125179 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 96143 125980629 125982170 127125707 127127248 NC_060925.1 CM039034.1 98.31 True local misassembly 125982511 125983832 127127249 127128570 NC_060925.1 CM039034.1 98.34 True translocation 29204791 29206048 127128670 127129927 NC_060943.1 CM039034.1 96.82 True local misassembly 29206922 29207827 127130800 127131705 NC_060943.1 CM039034.1 96.8 True translocation 126011430 126015201 127133545 127137315 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -37910 125978227 125982727 127138251 127142745 NC_060925.1 CM039034.1 97.45 True fake: not a misassembly (possible transposable element) 126254564 126256527 127142746 127144709 NC_060925.1 CM039034.1 98.57 True fake: not a misassembly (possible transposable element) 125978575 125982727 127144710 127148860 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 271836 126254564 126257623 127148861 127151918 NC_060925.1 CM039034.1 98.28 True local misassembly 126254564 126255514 127151919 127152869 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = 2091933 124159214 124162630 127156285 127152870 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 2012708 126175836 126177335 127156783 127158282 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 76119 126253467 126257697 127158295 127162524 NC_060925.1 CM039034.1 97.87 True local misassembly 126254298 126255673 127162525 127163900 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -80874 126175691 126177762 127164792 127166862 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -171054 126006709 126009511 127166863 127169663 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 244456 126253968 126255174 127169664 127170868 NC_060925.1 CM039034.1 97.64 True local misassembly 126253816 126255500 127170869 127172552 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -275914 125979587 125982802 127172553 127175766 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 1818800 124160251 124160786 127176302 127175767 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 2093029 126253816 126256349 127176303 127178834 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 554663 125695401 125696250 127182586 127181737 NC_060925.1 CM039034.1 96.47 True indel: indel (<= 5bp) 125694715 125695399 127183271 127182587 NC_060925.1 CM039034.1 96.2 True relocation, inconsistency = 3542161 122148515 122151921 127183904 127187307 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -260144 121894021 121894932 127189551 127190461 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 4323441 126218442 126219517 127190530 127191604 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -4191202 122028316 122028997 127191605 127192286 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -55196 121973802 121977685 127192287 127196169 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 4247410 126225252 126226610 127196326 127197684 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -37043 126189971 126192467 127198088 127200579 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -4129621 122063351 122068178 127201084 127205910 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 4072296 126140475 126143150 127205911 127208585 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -163823 125980468 125982802 127209726 127212057 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 104656 126087979 126089653 127212578 127214252 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 912071 125173330 125175652 127216826 127214508 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 2907273 122260942 122263795 127219088 127221937 NC_060925.1 CM039034.1 96.92 True translocation 29230758 29231571 127223511 127224324 NC_060943.1 CM039034.1 96.93 True translocation 124197468 124198303 127227343 127226508 NC_060925.1 CM039034.1 97.49 True translocation 26270947 26272187 127227538 127228778 NC_060943.1 CM039034.1 96.78 True relocation, inconsistency = 2976729 29249058 29249732 127228920 127229592 NC_060943.1 CM039034.1 96.68 True translocation 124117170 124121285 127229593 127233709 NC_060925.1 CM039034.1 97.4 True translocation 29465926 29466463 127234210 127234747 NC_060943.1 CM039034.1 97.77 True translocation 125998244 126002352 127236040 127240150 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 247752 126250105 126251420 127240151 127241466 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = -2789632 123461789 123464223 127241467 127243897 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 2542459 126006683 126011126 127243898 127248342 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -3748114 122263514 122265211 127248844 127250541 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 9853 122275065 122278187 127250542 127253663 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 742056 123020970 123022472 127254390 127255892 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -1127967 121895703 121897579 127257090 127258971 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 4090004 125987741 125988687 127259129 127260076 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 1821963 124161796 124164076 127264057 127261778 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 1974034 122184687 122186636 127265183 127267131 NC_060925.1 CM039034.1 97.13 True local misassembly 122184687 122188769 127267902 127271984 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 1958622 124147392 124148101 127272694 127271985 NC_060925.1 CM039034.1 97.05 True local misassembly 124146004 124147050 127273741 127272695 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -90317 124231561 124232919 127278501 127277143 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = -719967 124948022 124951527 127282008 127278502 NC_060925.1 CM039034.1 97.32 True translocation 29591930 29592583 127282009 127282662 NC_060943.1 CM039034.1 96.76 True translocation 124229180 124230389 127285299 127284090 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 1708433 125938823 125941595 127285300 127288076 NC_060925.1 CM039034.1 97.73 True translocation 27811916 27812745 127292446 127293276 NC_060943.1 CM039034.1 97.47 True fake: not a misassembly (possible transposable element) 123956025 123960594 127294139 127298710 NC_060925.1 CM039034.1 96.63 True fake: not a misassembly (possible transposable element) 27812740 27813681 127298711 127299653 NC_060943.1 CM039034.1 96.5 True translocation 126246938 126249033 127301543 127303639 NC_060925.1 CM039034.1 97.66 True fake: not a misassembly (possible transposable element) 29501722 29502716 127303640 127304634 NC_060943.1 CM039034.1 96.58 True fake: not a misassembly (possible transposable element) 126246938 126249033 127306979 127309075 NC_060925.1 CM039034.1 97.66 True translocation 29501722 29503119 127309076 127310473 NC_060943.1 CM039034.1 96.28 True translocation 121853831 121854744 127311384 127312300 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 4392079 126246938 126248883 127312415 127314360 NC_060925.1 CM039034.1 97.89 True fake: not a misassembly (possible transposable element) 126109244 126110782 127315878 127317416 NC_060925.1 CM039034.1 96.79 True fake: not a misassembly (possible transposable element) 126253639 126255411 127317417 127319185 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -107618 126147877 126149758 127319269 127321150 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -168292 125981659 125984504 127321343 127324183 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = -107356 125877149 125878686 127324184 127325720 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 220801 126099488 126104935 127325721 127331266 NC_060925.1 CM039034.1 95.01 True relocation, inconsistency = -7379 126097557 126099996 127331267 127333706 NC_060925.1 CM039034.1 97.51 True local misassembly 126100662 126103497 127334421 127337256 NC_060925.1 CM039034.1 98.73 True local misassembly 126100463 126103552 127337572 127340661 NC_060925.1 CM039034.1 98.77 True local misassembly 126102453 126106268 127340922 127344738 NC_060925.1 CM039034.1 98.09 True fake: not a misassembly (possible transposable element) 126131622 126134123 127344997 127347501 NC_060925.1 CM039034.1 97.13 True fake: not a misassembly (possible transposable element) 126102495 126106268 127347758 127351532 NC_060925.1 CM039034.1 97.35 True translocation 29587485 29588844 127351533 127352892 NC_060943.1 CM039034.1 96.23 True translocation 122255112 122258400 127353488 127356775 NC_060925.1 CM039034.1 97.84 True translocation 26352421 26353310 127357437 127358326 NC_060943.1 CM039034.1 96.97 True translocation 121832387 121836131 127359975 127363716 NC_060925.1 CM039034.1 96.21 True relocation, inconsistency = 4145197 125981575 125985147 127363963 127367548 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 267078 126253158 126254369 127368481 127369686 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = -78494 126175876 126178445 127369687 127372255 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = -319389 125859346 125861422 127372545 127374620 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 1676382 124180159 124182694 127377424 127374890 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 1797049 125980965 125985147 127378646 127382840 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 268437 126253585 126254563 127382841 127383817 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = -104948 126150098 126152667 127384300 127386868 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = -291912 125860756 125861422 127386869 127387535 NC_060925.1 CM039034.1 98.46 True translocation 29613907 29615257 127387805 127389156 NC_060943.1 CM039034.1 95.78 True translocation 124247117 124248513 127392977 127391582 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 797604 123446571 123449512 127392978 127395917 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = 2433213 125883552 125885443 127396744 127398635 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = 69981 125958181 125959548 127401392 127402758 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 145967 126105516 126107690 127402759 127404936 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 114996 126224038 126225778 127406288 127408028 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -128828 126096951 126097624 127408029 127408702 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = 151590 126251419 126252020 127410907 127411508 NC_060925.1 CM039034.1 98.34 True indel: indel (<= 5bp) 126252022 126253283 127411509 127412770 NC_060925.1 CM039034.1 96.91 True indel: stretch of mismatches 126253310 126253989 127412797 127413476 NC_060925.1 CM039034.1 97.94 True indel: indel (<= 5bp) 126254268 126255134 127413754 127414620 NC_060925.1 CM039034.1 99.31 True local misassembly 126255474 126256028 127414621 127415175 NC_060925.1 CM039034.1 96.58 True indel: indel (<= 5bp) 126256030 126256683 127415176 127415829 NC_060925.1 CM039034.1 96.18 True indel: indel (<= 5bp) 126256684 126257199 127415831 127416346 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = -248194 126009006 126011899 127416347 127419243 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = 81305 126093956 126096864 127419995 127422853 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 116265 126214393 126217797 127424117 127427520 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -4050718 122167285 122171235 127427726 127431675 NC_060925.1 CM039034.1 97.19 True translocation 25943880 25947511 127431676 127435305 NC_060943.1 CM039034.1 96.47 True translocation 126239844 126241271 127435306 127436733 NC_060925.1 CM039034.1 98.25 True local misassembly 126239233 126241883 127436734 127439384 NC_060925.1 CM039034.1 97.36 True indel: indel (<= 5bp) 126241885 126242535 127439385 127440035 NC_060925.1 CM039034.1 98.31 True indel: indel (<= 5bp) 126242537 126243620 127440036 127441119 NC_060925.1 CM039034.1 97.01 True local misassembly 126241242 126243569 127441120 127443447 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -4113245 122130499 122134970 127443622 127448092 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 1950054 124086550 124087722 127449618 127450788 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 2155378 126244296 126248265 127451984 127455953 NC_060925.1 CM039034.1 97.58 True translocation 25948119 25948665 127455954 127456499 NC_060943.1 CM039034.1 96.68 True local misassembly 25947574 25948665 127456768 127457858 NC_060943.1 CM039034.1 96.61 True translocation 123817388 123819703 127463561 127465873 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 2440192 126260937 126262031 127466915 127468010 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -4008540 122257830 122259025 127472349 127473544 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = 1513638 123774798 123776721 127475679 127477600 NC_060925.1 CM039034.1 97.09 True translocation 25865739 25866445 127478465 127479171 NC_060943.1 CM039034.1 96.75 True relocation, inconsistency = 3568705 29438857 29439567 127482878 127483588 NC_060943.1 CM039034.1 96.74 True translocation 126007682 126011807 127483589 127487712 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 214552 126226955 126229769 127488308 127491122 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -261975 125967795 125968711 127491123 127492039 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 1723995 124240222 124243198 127495616 127492641 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 2083449 122152791 122154229 127498160 127499596 NC_060925.1 CM039034.1 96.46 True translocation 27363680 27365241 127500678 127502239 NC_060943.1 CM039034.1 96.73 True translocation 124228423 124230201 127504023 127502240 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -477566 124701229 124705392 127508782 127504620 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 1223329 125928722 125929567 127508783 127509627 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -62869 125866789 125867975 127509718 127510903 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 1577604 124284076 124288332 127516011 127511756 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 1640141 125928474 125929317 127516012 127516855 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 1223081 124701229 124705392 127521018 127516856 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 491806 124208152 124209422 127522293 127521019 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -24768 124230861 124232919 127524353 127522294 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 1678405 125911325 125915584 127524354 127528614 NC_060925.1 CM039034.1 97.58 True translocation 29350112 29351380 127530938 127532202 NC_060943.1 CM039034.1 95.9 True translocation 122173340 122174757 127533317 127534733 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 2825430 125000188 125005010 127539560 127534734 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = -677446 125673985 125677633 127543208 127539561 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 1442947 124229778 124231037 127544469 127543209 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = 17302 124208782 124211880 127548169 127545065 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = 43461 124159768 124165320 127553721 127548170 NC_060925.1 CM039034.1 97.5 True local misassembly 124159768 124163506 127557460 127553722 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -71294 124229948 124231061 127558574 127557461 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 1698849 125930383 125932119 127559047 127560784 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = -39078 125893977 125894995 127561720 127562739 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 1663775 124227743 124230201 127565203 127562740 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = -64241 124285632 124289659 127571557 127567528 NC_060925.1 CM039034.1 97.69 True fake: not a misassembly (possible transposable element) 125870205 125872966 127573974 127576735 NC_060925.1 CM039034.1 96.78 True fake: not a misassembly (possible transposable element) 124285632 124286573 127577676 127576736 NC_060925.1 CM039034.1 97.39 True translocation 29685648 29686781 127578080 127579215 NC_060943.1 CM039034.1 97.98 True relocation, inconsistency = -21411 29665598 29666415 127579443 127580260 NC_060943.1 CM039034.1 98.66 True translocation 122256811 122260363 127582458 127586009 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 1928326 124190499 124192353 127588912 127587055 NC_060925.1 CM039034.1 98.51 True local misassembly 124189735 124193212 127592394 127588913 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = -33599 124222563 124223333 127593165 127592395 NC_060925.1 CM039034.1 98.57 True translocation 28882159 28886957 127593587 127598381 NC_060943.1 CM039034.1 96.12 True translocation 122143163 122144398 127598657 127599892 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = -134358 122012341 122014725 127602193 127604577 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -32434 121982292 121983107 127604578 127605392 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 196030 122179515 122180860 127605770 127607115 NC_060925.1 CM039034.1 97.7 True local misassembly 122179515 122180858 127608830 127610173 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -180587 122001105 122005215 127611007 127615117 NC_060925.1 CM039034.1 96.23 True relocation, inconsistency = 159169 122165420 122166778 127616153 127617511 NC_060925.1 CM039034.1 96.9 True translocation 27838120 27841634 127617512 127621027 NC_060943.1 CM039034.1 96.59 True translocation 125980427 125981629 127621028 127622230 NC_060925.1 CM039034.1 97.69 True indel: indel (<= 5bp) 125981631 125982488 127622231 127623088 NC_060925.1 CM039034.1 97.44 True local misassembly 125982829 125984166 127623089 127624426 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = -3825769 122161524 122165207 127627553 127631236 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 3935379 126104996 126105525 127635646 127636175 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 1817362 124285059 124287633 127638747 127636176 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 2200582 122079182 122084476 127638748 127644041 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 4150702 126235449 126240290 127644312 127649154 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = -379195 125861096 125864570 127649155 127652629 NC_060925.1 CM039034.1 96.83 True translocation 48163909 48165047 127653049 127654187 NC_060929.1 CM039034.1 96.49 True translocation 125996915 126000363 127655573 127659020 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -125659 125874948 125876914 127659264 127661230 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -3713652 122163674 122166961 127661642 127664929 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -117643 122049319 122050872 127664930 127666483 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 4197232 126248710 126252098 127667089 127670478 NC_060925.1 CM039034.1 97.97 True fake: not a misassembly (possible transposable element) 125876646 125878189 127670479 127672021 NC_060925.1 CM039034.1 98.06 True fake: not a misassembly (possible transposable element) 126248884 126249894 127672022 127673034 NC_060925.1 CM039034.1 98.15 True translocation 29212346 29213771 127673882 127675308 NC_060943.1 CM039034.1 96.57 True translocation 125868490 125870938 127675918 127678367 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = 377153 126248710 126250236 127678986 127680513 NC_060925.1 CM039034.1 97.65 True local misassembly 126249723 126251758 127681358 127683392 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -376811 125874948 125876170 127683393 127684616 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 1568471 124302265 124306476 127688820 127684617 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 2115049 122182367 122187215 127688821 127693669 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = -324055 121863793 121865084 127694302 127695597 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 4270584 126135694 126139394 127695623 127699318 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = -19998 126119558 126120764 127699480 127700685 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 105491 126226635 126229415 127701065 127703841 NC_060925.1 CM039034.1 97.45 True translocation 26263539 26264218 127703842 127704520 NC_060943.1 CM039034.1 96.29 True translocation 126190934 126192908 127705116 127707087 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 30923 126223832 126229044 127707088 127712294 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 25488 126254533 126255789 127712295 127713551 NC_060925.1 CM039034.1 99.19 True relocation, inconsistency = -270475 125986383 125987028 127714620 127715264 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 160135 126147164 126150364 127715265 127718465 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -171983 125978813 125982727 127718897 127722809 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 15587 126000473 126005292 127724968 127729787 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = -23353 125981940 125982727 127729788 127730575 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 15587 126000473 126005134 127732734 127737395 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = 251883 126257018 126258898 127737396 127739274 NC_060925.1 CM039034.1 98.08 True local misassembly 126256860 126259413 127739275 127741826 NC_060925.1 CM039034.1 98.08 True local misassembly 126257375 126258898 127741827 127743348 NC_060925.1 CM039034.1 98.0 True local misassembly 126256860 126258465 127743349 127744952 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -88982 126169484 126172924 127744953 127748395 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 2005769 124162208 124163667 127749902 127748443 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 1840390 126004292 126005051 127750137 127750896 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = 179506 126184558 126187374 127750897 127753668 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = -152423 126035084 126038611 127753801 127757327 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 219026 126257638 126258898 127757328 127758586 NC_060925.1 CM039034.1 98.08 True local misassembly 126256860 126259413 127758587 127761138 NC_060925.1 CM039034.1 97.96 True local misassembly 126257375 126259413 127761139 127763175 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -279994 125979585 125982818 127763341 127766572 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 270816 126253635 126255333 127766573 127768269 NC_060925.1 CM039034.1 98.05 True fake: not a misassembly (possible transposable element) 126076619 126077686 127768576 127769643 NC_060925.1 CM039034.1 98.41 True fake: not a misassembly (possible transposable element) 126256710 126260878 127769644 127773809 NC_060925.1 CM039034.1 96.71 True local misassembly 126257480 126258005 127773810 127774335 NC_060925.1 CM039034.1 98.12 True indel: indel (<= 5bp) 126258008 126258898 127774336 127775226 NC_060925.1 CM039034.1 97.87 True local misassembly 126256860 126260002 127775227 127778365 NC_060925.1 CM039034.1 97.26 True local misassembly 126254564 126255333 127778366 127779135 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = -165189 126090989 126092191 127779980 127781182 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1920365 124168764 124170125 127783043 127781681 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 2079597 126249723 126251657 127783044 127784979 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -3996987 122254671 122258131 127784980 127788437 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 3722485 125980733 125982431 127788554 127790252 NC_060925.1 CM039034.1 98.12 True local misassembly 125982432 125983937 127790591 127792096 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 269117 126253055 126256278 127792097 127795318 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -69320 126187591 126188641 127795951 127797001 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -4078588 122110940 122114556 127797888 127801504 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = 3577699 125693125 125695564 127804813 127802374 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = 1728938 123963081 123964001 127804999 127805919 NC_060925.1 CM039034.1 97.61 True local misassembly 123964342 123966719 127805920 127808297 NC_060925.1 CM039034.1 97.77 True translocation 29665598 29666549 127808515 127809465 NC_060943.1 CM039034.1 97.69 True translocation 126263993 126265007 127811529 127812543 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -264404 126000948 126004381 127812888 127816322 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 200918 126205300 126206776 127816323 127817799 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = -37337 126170504 126174043 127818864 127822405 NC_060925.1 CM039034.1 97.09 True translocation 29241906 29243001 127823044 127824139 NC_060943.1 CM039034.1 95.89 True translocation 126268251 126271566 127824238 127827553 NC_060925.1 CM039034.1 96.95 True fake: not a misassembly (possible transposable element) 25951312 25952433 127827830 127828951 NC_060943.1 CM039034.1 96.44 True fake: not a misassembly (possible transposable element) 126271807 126272827 127829831 127830849 NC_060925.1 CM039034.1 97.78 True local misassembly 126268069 126272433 127830850 127835211 NC_060925.1 CM039034.1 97.3 True local misassembly 126278551 126279298 127835212 127835960 NC_060925.1 CM039034.1 97.98 True local misassembly 126276584 126282411 127835961 127841796 NC_060925.1 CM039034.1 98.37 True local misassembly 126279282 126280138 127842064 127842920 NC_060925.1 CM039034.1 97.43 True local misassembly 126278472 126281977 127842953 127846460 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 20208 126303041 126305098 127847316 127849373 NC_060925.1 CM039034.1 99.19 True local misassembly 126301367 126590742 127849374 128138740 NC_060925.1 CM039034.1 99.2 True relocation, inconsistency = -289222 126301521 126388448 128138741 128225671 NC_060925.1 CM039034.1 98.71 True translocation 26057573 26059658 128225822 128227907 NC_060945.1 CM039034.1 99.66 True translocation 126565705 126593479 128227908 128256037 NC_060925.1 CM039034.1 96.86 True local misassembly 126596041 126609909 128256038 128269902 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -19410 126590500 126611544 128269903 128291460 NC_060925.1 CM039034.1 95.53 True local misassembly 126605856 126606865 128291899 128292908 NC_060925.1 CM039034.1 96.24 True local misassembly 126600741 126602005 128292909 128294173 NC_060925.1 CM039034.1 97.15 True indel: indel (<= 5bp) 126602006 126603540 128294175 128295709 NC_060925.1 CM039034.1 97.33 True indel: stretch of mismatches 126603860 126605855 128296029 128298024 NC_060925.1 CM039034.1 96.99 True indel: indel (<= 5bp) 126605856 126606924 128298026 128299094 NC_060925.1 CM039034.1 95.51 True indel: indel (<= 5bp) 126606926 126609021 128299095 128301190 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -10729 126598381 126600477 128301279 128303375 NC_060925.1 CM039034.1 96.42 True indel: stretch of mismatches 126600799 126602005 128303697 128304903 NC_060925.1 CM039034.1 96.02 True indel: indel (<= 5bp) 126602006 126605855 128304905 128308754 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -7665 126598381 126600477 128308945 128311041 NC_060925.1 CM039034.1 96.42 True indel: stretch of mismatches 126600799 126602005 128311363 128312569 NC_060925.1 CM039034.1 96.02 True indel: indel (<= 5bp) 126602006 126605855 128312571 128316420 NC_060925.1 CM039034.1 97.04 True indel: indel (> 5bp) 126606039 126606922 128316611 128317494 NC_060925.1 CM039034.1 96.38 True indel: indel (<= 5bp) 126606924 126609176 128317495 128319747 NC_060925.1 CM039034.1 96.63 True indel: indel (<= 5bp) 126609177 126611460 128319749 128322032 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -19409 126592052 126593320 128322033 128323301 NC_060925.1 CM039034.1 96.53 True local misassembly 126593535 126594611 128324019 128325095 NC_060925.1 CM039034.1 96.66 True indel: indel (<= 5bp) 126594613 126595881 128325096 128326364 NC_060925.1 CM039034.1 97.01 True indel: indel (<= 5bp) 126595883 126597675 128326365 128328157 NC_060925.1 CM039034.1 96.82 True indel: indel (<= 5bp) 126597677 126598945 128328158 128329426 NC_060925.1 CM039034.1 96.93 True indel: indel (<= 5bp) 126598947 126600739 128329427 128331219 NC_060925.1 CM039034.1 96.71 True indel: indel (<= 5bp) 126600741 126602005 128331220 128332484 NC_060925.1 CM039034.1 96.92 True indel: indel (<= 5bp) 126602006 126603802 128332486 128334282 NC_060925.1 CM039034.1 97.44 True indel: indel (<= 5bp) 126603804 126605072 128334283 128335551 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -7658 126597415 126598945 128335552 128337082 NC_060925.1 CM039034.1 97.0 True indel: indel (<= 5bp) 126599209 126600477 128337344 128338612 NC_060925.1 CM039034.1 96.53 True local misassembly 126594351 126596143 128338613 128340405 NC_060925.1 CM039034.1 96.99 True indel: indel (<= 5bp) 126596145 126597413 128340406 128341674 NC_060925.1 CM039034.1 97.08 True indel: indel (<= 5bp) 126597677 126598945 128341936 128343204 NC_060925.1 CM039034.1 96.77 True indel: indel (<= 5bp) 126598947 126603802 128343205 128348060 NC_060925.1 CM039034.1 96.87 True indel: indel (<= 5bp) 126603804 126605072 128348061 128349329 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -10722 126594351 126596143 128349330 128351122 NC_060925.1 CM039034.1 97.04 True indel: indel (<= 5bp) 126596145 126597413 128351123 128352391 NC_060925.1 CM039034.1 96.85 True indel: indel (<= 5bp) 126597415 126599207 128352392 128354184 NC_060925.1 CM039034.1 97.16 True indel: indel (<= 5bp) 126599209 126600477 128354185 128355453 NC_060925.1 CM039034.1 96.61 True indel: indel (<= 5bp) 126600479 126603540 128355454 128358515 NC_060925.1 CM039034.1 96.9 True indel: indel (<= 5bp) 126603804 126605072 128358777 128360045 NC_060925.1 CM039034.1 97.32 True local misassembly 126598947 126602005 128360046 128363104 NC_060925.1 CM039034.1 96.7 True indel: indel (<= 5bp) 126602006 126603307 128363106 128364407 NC_060925.1 CM039034.1 96.77 True indel: indel (<= 5bp) 126603414 126604839 128364510 128365935 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = -9188 126595652 126599635 128365936 128369919 NC_060925.1 CM039034.1 96.74 True local misassembly 126593508 126609765 128369920 128386175 NC_060925.1 CM039034.1 96.53 True local misassembly 126612826 126614062 128386176 128387411 NC_060925.1 CM039034.1 96.72 True local misassembly 126611005 126634702 128387412 128411111 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = -21418 126613285 126631852 128411112 128429677 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = -21419 126610434 126634058 128429678 128453296 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 13769 126647828 126672287 128453297 128477759 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -24476 126647812 126933473 128477760 128763084 NC_060925.1 CM039034.1 98.89 True local misassembly 126928742 126933490 128763085 128767833 NC_060925.1 CM039034.1 99.07 True local misassembly 126933482 126936385 128768495 128771398 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = 4944752 131881638 131882472 128772733 128771899 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 2559427 129319261 129321508 128775684 128773436 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 2378691 126937031 126938455 128777799 128779223 NC_060925.1 CM039034.1 99.44 True relocation, inconsistency = 8359 126946839 126951540 128779248 128783926 NC_060925.1 CM039034.1 96.34 True local misassembly 126944913 126946128 128783927 128785142 NC_060925.1 CM039034.1 98.27 True indel: indel (> 5bp) 126946152 126946783 128785143 128785774 NC_060925.1 CM039034.1 97.15 True indel: indel (> 5bp) 126946810 126947500 128785775 128786465 NC_060925.1 CM039034.1 98.55 True indel: indel (<= 5bp) 126947729 126949191 128786697 128788159 NC_060925.1 CM039034.1 98.63 True indel: indel (> 5bp) 126949264 126950034 128788160 128788930 NC_060925.1 CM039034.1 98.08 True local misassembly 126943277 126951759 128788931 128797494 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -12161 126939599 126942857 128797495 128800778 NC_060925.1 CM039034.1 96.58 True local misassembly 126949554 126951113 128800779 128802338 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 168265 127119379 127126484 128802339 128809492 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -142795 126983690 126989234 128809493 128815186 NC_060925.1 CM039034.1 95.99 True relocation, inconsistency = 53412 127042777 127048189 128815317 128820667 NC_060925.1 CM039034.1 97.32 True indel: indel (> 5bp) 127048459 127050797 128820878 128823216 NC_060925.1 CM039034.1 99.27 True local misassembly 127055362 127058707 128823527 128826872 NC_060925.1 CM039034.1 98.86 True indel: indel (> 5bp) 127058708 127062620 128826922 128830834 NC_060925.1 CM039034.1 99.26 True indel: indel (> 5bp) 127062647 127063215 128830835 128831403 NC_060925.1 CM039034.1 95.61 True relocation, inconsistency = 2031805 129097818 129099481 128833351 128831664 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -23783 129117518 129121600 128837432 128833352 NC_060925.1 CM039034.1 98.37 True local misassembly 129117721 129123628 128843338 128837433 NC_060925.1 CM039034.1 97.77 True local misassembly 129112521 129123831 128854595 128843339 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -197558 129308232 129309308 128856442 128855366 NC_060925.1 CM039034.1 97.68 True local misassembly 129307474 129308131 128857100 128856443 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = -9541 129311910 129317014 128862048 128857101 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = 195867 129106224 129116042 128871789 128862049 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -9576 129111665 129115799 128875925 128871790 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 129101673 129111527 128886079 128876122 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = -345274 129444963 129446946 128888063 128886080 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 148165 129295471 129296788 128889365 128888073 NC_060925.1 CM039034.1 96.2 True relocation, inconsistency = 2188178 127101861 127106244 128889366 128893774 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = 2000882 129107127 129117059 128903807 128893775 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = -339820 129444963 129446946 128905791 128903808 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 148165 129295319 129296788 128907262 128905801 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 184340 129107265 129109086 128910992 128909155 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = -342523 129444963 129449787 128915865 128910993 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 330437 129113972 129114525 128916419 128915866 NC_060925.1 CM039034.1 98.26 True fake: not a misassembly (possible transposable element) 127110691 127115849 128916420 128921576 NC_060925.1 CM039034.1 97.16 True fake: not a misassembly (possible transposable element) 129101673 129108876 128928893 128921577 NC_060925.1 CM039034.1 95.85 True relocation, inconsistency = -345274 129444981 129446946 128930859 128928894 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 13858 129427699 129431122 128934258 128930860 NC_060925.1 CM039034.1 95.96 True relocation, inconsistency = 113182 129313656 129314450 128935119 128934325 NC_060925.1 CM039034.1 96.98 True indel: indel (> 5bp) 129312255 129313655 128936536 128935136 NC_060925.1 CM039034.1 97.64 True indel: indel (<= 5bp) 129311528 129312254 128937264 128936538 NC_060925.1 CM039034.1 98.49 True indel: indel (> 5bp) 129310921 129311527 128937916 128937310 NC_060925.1 CM039034.1 98.02 True local misassembly 129309309 129310374 128939555 128938490 NC_060925.1 CM039034.1 97.28 True indel: indel (> 5bp) 129308171 129309173 128940642 128939640 NC_060925.1 CM039034.1 97.71 True indel: indel (<= 5bp) 129307171 129308170 128941643 128940644 NC_060925.1 CM039034.1 98.7 True local misassembly 129304950 129306555 128943830 128942225 NC_060925.1 CM039034.1 98.38 True indel: indel (<= 5bp) 129303828 129304894 128944954 128943888 NC_060925.1 CM039034.1 96.53 True indel: indel (<= 5bp) 129302746 129303827 128946037 128944956 NC_060925.1 CM039034.1 98.06 True indel: indel (> 5bp) 129302193 129302745 128946616 128946064 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = -84438 129382561 129385253 128950709 128947994 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -9297 129386857 129391857 128955725 128950710 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 2168265 127214951 127218040 128956277 128959435 NC_060925.1 CM039034.1 95.5 True relocation, inconsistency = 2205411 129424132 129427883 128963796 128960068 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 34570 129380031 129389561 128973350 128963797 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -10635 129388632 129390665 128975384 128973351 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 91711 129295319 129296788 128976978 128975517 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -151554 129444981 129446690 128978870 128977161 NC_060925.1 CM039034.1 99.48 True relocation, inconsistency = 13858 129424337 129431122 128985631 128978871 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 195524 129223177 129228581 128991314 128985863 NC_060925.1 CM039034.1 95.92 True relocation, inconsistency = -166385 129380031 129389561 129000816 128991315 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -10635 129388054 129390665 129003428 129000817 NC_060925.1 CM039034.1 98.07 True local misassembly 129385181 129386705 129004988 129003429 NC_060925.1 CM039034.1 97.45 True local misassembly 129380120 129390449 129015473 129004989 NC_060925.1 CM039034.1 95.9 True relocation, inconsistency = 2190957 127185892 127189162 129015474 129018754 NC_060925.1 CM039034.1 97.61 True local misassembly 127189423 127190295 129018777 129019649 NC_060925.1 CM039034.1 95.46 True relocation, inconsistency = 2098863 129289159 129292345 129022846 129019650 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -403845 129687142 129692230 129028613 129023620 NC_060925.1 CM039034.1 95.27 True relocation, inconsistency = 9150 129676457 129677394 129030148 129029211 NC_060925.1 CM039034.1 97.14 True local misassembly 129674488 129675962 129031600 129030149 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -4840474 134509437 134514961 129037124 129031601 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -5988263 140494725 140497190 129040099 129037634 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 3472271 137017577 137022453 129045001 129040100 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -2681573 139694516 139696193 129049635 129047958 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -2279604 141969886 141974013 129053869 129049742 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 8999260 132969800 132970625 129054695 129053870 NC_060925.1 CM039034.1 97.29 True local misassembly 132972830 132974035 129056057 129054852 NC_060925.1 CM039034.1 98.09 True local misassembly 132971727 132972829 129057628 129056526 NC_060925.1 CM039034.1 97.64 True indel: indel (<= 5bp) 132969696 132971725 129059658 129057629 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -1547743 134510846 134516990 129066250 129060107 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 3886107 130622561 130624430 129068419 129066559 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = -9750469 140371978 140373029 129069471 129068420 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 8727369 131638541 131644043 129075538 129070037 NC_060925.1 CM039034.1 98.93 True local misassembly 131638541 131640316 129077314 129075539 NC_060925.1 CM039034.1 98.95 True local misassembly 131642861 131643868 129078322 129077315 NC_060925.1 CM039034.1 99.24 True local misassembly 131640149 131642392 129080566 129078323 NC_060925.1 CM039034.1 99.09 True relocation, inconsistency = -8649898 140284059 140290046 129086505 129080567 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 295767 139985854 139988291 129088943 129086506 NC_060925.1 CM039034.1 98.91 True relocation, inconsistency = -1505193 141487360 141491046 129092629 129088944 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = -33990 141514809 141518633 129099170 129095346 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 536386 140977141 140978422 129100452 129099171 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 3253687 137721888 137723378 129102018 129100528 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 7183042 130537991 130538845 129102878 129102019 NC_060925.1 CM039034.1 99.02 True relocation, inconsistency = -9751151 140283570 140289007 129108361 129103013 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 2119738 138157874 138163444 129114319 129108749 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = -2127086 140283570 140284959 129115698 129114320 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 2492163 137785441 137791019 129121664 129116086 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = -2499511 140283570 140284951 129123035 129121665 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 5767080 134512481 134516081 129127044 129123444 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -4498190 139004774 139006871 129132941 129130844 NC_060925.1 CM039034.1 99.0 True local misassembly 139003714 139004773 129134469 129133410 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 2451510 136550346 136552055 129136327 129134618 NC_060925.1 CM039034.1 97.54 True local misassembly 136548536 136550345 129138280 129136471 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -2233675 138773417 138780376 129147107 129140115 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -1514240 140285990 140287304 129148774 129147460 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 1770718 138510132 138515271 129153989 129148775 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = -1468149 139974795 139978074 129157475 129154196 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 1457560 138510132 138517234 129164777 129157476 NC_060925.1 CM039034.1 95.92 True relocation, inconsistency = -1164796 139673058 139674594 129166647 129165111 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -2053239 141721838 141724763 129171106 129168181 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 12010731 129708210 129711069 129174007 129171144 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -9954001 139658727 139661739 129177491 129174479 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -2067854 141721838 141724714 129182234 129179358 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = 12010731 129708210 129711069 129185135 129182272 NC_060925.1 CM039034.1 97.1 True local misassembly 129712464 129714011 129187101 129185554 NC_060925.1 CM039034.1 97.55 True indel: indel (<= 5bp) 129710270 129712304 129189299 129187265 NC_060925.1 CM039034.1 97.1 True local misassembly 129708318 129713756 129196401 129190954 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = -11254510 140959202 140961358 129200030 129197871 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 2694746 138262128 138263671 129202348 129200815 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 8584776 129674003 129675927 129205697 129203773 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -42875 129707925 129716375 129214670 129206200 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = -1107619 130813438 130815543 129216825 129214671 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = -11218889 142029648 142032326 129219504 129216826 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 12319776 129707925 129709871 129221451 129219505 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = -5889870 135591908 135592843 129227338 129226403 NC_060925.1 CM039034.1 97.97 True indel: indel (> 5bp) 135591208 135591881 129228012 129227339 NC_060925.1 CM039034.1 95.94 True fake: not a misassembly (possible transposable element) 138648137 138651801 129231651 129228013 NC_060925.1 CM039034.1 97.38 True fake: not a misassembly (possible transposable element) 135591908 135592843 129233475 129232540 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -3177826 138765687 138769059 129237496 129234150 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 9059728 129700708 129705958 129242869 129237497 NC_060925.1 CM039034.1 95.31 True relocation, inconsistency = -3867357 133565374 133568064 129245562 129242870 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -6462724 140026757 140028097 129246903 129245563 NC_060925.1 CM039034.1 97.02 True local misassembly 140025101 140026291 129248094 129246904 NC_060925.1 CM039034.1 97.65 True indel: indel (<= 5bp) 140024198 140025095 129248992 129248095 NC_060925.1 CM039034.1 97.88 True indel: indel (> 5bp) 140019717 140024072 129253437 129249082 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = -565434 140582772 140584493 129255813 129254095 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 73947 140507041 140508440 129257597 129256198 NC_060925.1 CM039034.1 99.0 True local misassembly 140504333 140506342 129259828 129257819 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = -7282 140508604 140510182 129262839 129261261 NC_060925.1 CM039034.1 98.04 True indel: stretch of mismatches 140507895 140508416 129263570 129263027 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -1617558 142119919 142125452 129269125 129263571 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 15018358 127092577 127093888 129269284 129270595 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 20580 127114469 127123460 129270596 129279534 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 2256218 129379686 129380925 129280758 129279542 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = -10391928 139769397 139771173 129282955 129281199 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -337660 140104603 140106728 129285409 129283284 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 9516473 130586233 130587657 129287306 129285882 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -11143524 141725457 141729734 129291697 129287329 NC_060925.1 CM039034.1 95.74 True relocation, inconsistency = 8519785 133202718 133204223 129294651 129293146 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 3523589 129675938 129678063 129297832 129295717 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -12059848 141731207 141733284 129302412 129300334 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 1539236 140184003 140185320 129310380 129309063 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 9555682 130626962 130628235 129311739 129310466 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 819328 129801232 129807633 129318142 129311740 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -580780 130381009 130382011 129319145 129318143 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -11235362 141614537 141616370 129320990 129319146 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 4018451 137592935 137595626 129324237 129321450 NC_060925.1 CM039034.1 95.37 True relocation, inconsistency = 5866263 131721569 131723539 129329340 129327370 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -9163119 140879702 140884687 129334346 129329341 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -768027 141644618 141646197 129337460 129335878 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = -14051 141653738 141658668 129342390 129337461 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 2010929 139640898 139642808 129344276 129342391 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = 9963105 129675929 129677394 129346140 129344675 NC_060925.1 CM039034.1 97.95 True local misassembly 129675882 129678714 129349608 129346812 NC_060925.1 CM039034.1 96.82 True local misassembly 129675938 129679132 129352968 129349838 NC_060925.1 CM039034.1 95.43 True relocation, inconsistency = -6750285 136424712 136425963 129354479 129353228 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -5123831 141542527 141547512 129360515 129355510 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 4001658 137536733 137540388 129364700 129360996 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 585093 136949277 136950299 129367063 129366041 NC_060925.1 CM039034.1 97.92 True fake: not a misassembly (possible transposable element) 137890047 137893702 129370740 129367064 NC_060925.1 CM039034.1 96.82 True fake: not a misassembly (possible transposable element) 136941916 136943195 129373360 129372081 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 7262500 129675882 129679415 129376861 129373361 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -12359430 142032047 142035197 129380062 129376976 NC_060925.1 CM039034.1 95.56 True relocation, inconsistency = 13290138 128740803 128741509 129380462 129381168 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 11892442 140634156 140634889 129382043 129381310 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 10956092 129677357 129678063 129382750 129382044 NC_060925.1 CM039034.1 97.92 True local misassembly 129675938 129679132 129385891 129382751 NC_060925.1 CM039034.1 95.4 True relocation, inconsistency = -16462 129691158 129692140 129387133 129386151 NC_060925.1 CM039034.1 98.07 True indel: indel (<= 5bp) 129688588 129690891 129389707 129387404 NC_060925.1 CM039034.1 96.61 True indel: indel (> 5bp) 129687199 129688136 129391024 129390087 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 11236 129673855 129675962 129393104 129391025 NC_060925.1 CM039034.1 97.01 True local misassembly 129671648 129676095 129399647 129395195 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = -12304421 141974014 141975808 129401702 129399908 NC_060925.1 CM039034.1 98.59 True local misassembly 141970446 141975789 129407045 129401703 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -155995 142121438 142126008 129412047 129407478 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 6540852 135572808 135580488 129419802 129412145 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 5363838 130207268 130208969 129421504 129419803 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -6569312 136772364 136776579 129425716 129421505 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 24076 136744753 136748287 129429247 129425717 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = -507593 137248664 137252269 129432928 129429324 NC_060925.1 CM039034.1 98.64 True fake: not a misassembly (possible transposable element) 136744753 136748485 129436765 129433037 NC_060925.1 CM039034.1 98.71 True fake: not a misassembly (possible transposable element) 137246477 137247015 129437306 129436768 NC_060925.1 CM039034.1 98.14 True indel: indel (> 5bp) 137245258 137246476 129438548 129437330 NC_060925.1 CM039034.1 98.11 True indel: indel (<= 5bp) 137244724 137245256 129439081 129438549 NC_060925.1 CM039034.1 99.06 True indel: indel (> 5bp) 137243540 137244723 129440288 129439105 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 6859343 130379195 130384136 129445290 129440349 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 682395 129694994 129696413 129447097 129445677 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -8635833 138325247 138328047 129452682 129449877 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 5213689 133108151 133111360 129456067 129452880 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -4034209 137139787 137142324 129458639 129456103 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 3641173 133494937 133498613 129462339 129458640 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -3253549 136744753 136748485 129466068 129462340 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 6360584 130379277 130384136 129470960 129466101 NC_060925.1 CM039034.1 98.38 True local misassembly 130379195 130384136 129475902 129470961 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -22618 130400119 130401426 129477596 129476289 NC_060925.1 CM039034.1 98.81 True local misassembly 130392917 130401426 129486106 129477597 NC_060925.1 CM039034.1 98.6 True relocation, inconsistency = -10909560 141300664 141302476 129487920 129486107 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 12352 141287314 141288168 129488918 129488064 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 3323264 137956694 137964049 129496275 129488919 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 351539 137603348 137605154 129498056 129496276 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = 853435 136748888 136749412 129499081 129498557 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 136748331 136748886 129499637 129499082 NC_060925.1 CM039034.1 99.46 True local misassembly 136745087 136747805 129502412 129499694 NC_060925.1 CM039034.1 98.79 True indel: indel (<= 5bp) 136744290 136745085 129503208 129502413 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 7034927 129706012 129709325 129506564 129503246 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -7043804 136744504 136749815 129511849 129506565 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -4904467 141643473 141646155 129517300 129514665 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 11945228 129696569 129698166 129518975 129517379 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -10434295 140127187 140130551 129522583 129519288 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 9725685 130393096 130401426 129530965 129522659 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -11665144 142051684 142058134 129537547 129531071 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 5861996 136188502 136189687 129538733 129537548 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 5612489 130573674 130575971 129541072 129538775 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -9625389 140194489 140196593 129545647 129543542 NC_060925.1 CM039034.1 96.44 True local misassembly 140191980 140193814 129547981 129546147 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = 61107 140126374 140128485 129552467 129550369 NC_060925.1 CM039034.1 97.02 True fake: not a misassembly (possible transposable element) 140588578 140590995 129555228 129552812 NC_060925.1 CM039034.1 98.43 True fake: not a misassembly (possible transposable element) 140128683 140130119 129556710 129555324 NC_060925.1 CM039034.1 96.7 True local misassembly 140127187 140130507 129559985 129556711 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 10430698 129694687 129696413 129561791 129560061 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -11370367 141063796 141065053 129563049 129561792 NC_060925.1 CM039034.1 98.65 True local misassembly 141059718 141063327 129566659 129563050 NC_060925.1 CM039034.1 97.23 True indel: indel (> 5bp) 141058489 141059691 129567897 129566695 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 10656020 130393096 130401426 129577270 129568940 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -3080941 133470187 133474036 129581095 129577271 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = -6662943 140127187 140130503 129586992 129583722 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = 10436954 129686650 129690149 129590578 129587076 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -10444099 140127187 140130551 129594094 129590776 NC_060925.1 CM039034.1 97.0 True local misassembly 140127467 140130551 129597366 129594327 NC_060925.1 CM039034.1 96.89 True fake: not a misassembly (possible transposable element) 140649258 140650679 129598787 129597367 NC_060925.1 CM039034.1 96.48 True fake: not a misassembly (possible transposable element) 140127187 140130551 129602505 129599186 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 9725685 130394711 130401426 129609272 129602581 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -3077389 133470187 133472099 129611184 129609273 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -6661166 140128885 140130551 129613604 129611986 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 9727458 130393096 130401426 129621912 129613605 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -8092400 138484833 138485495 129622575 129621913 NC_060925.1 CM039034.1 97.62 True indel: indel (<= 5bp) 138483772 138484832 129623637 129622577 NC_060925.1 CM039034.1 98.21 True local misassembly 138482730 138483430 129624338 129623638 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 8098593 130377582 130384136 129630893 129624339 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 2949178 127423390 127428403 129630894 129635904 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 3384954 130813358 130815563 129638110 129635905 NC_060925.1 CM039034.1 98.32 True local misassembly 130812705 130813357 129639231 129638579 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = -6151665 136959806 136964369 129643911 129639232 NC_060925.1 CM039034.1 95.37 True relocation, inconsistency = -1034506 137987337 137994311 129650884 129643912 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 7354774 130631170 130632562 129652278 129650885 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 919136 129704125 129712033 129660171 129652279 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = -8494 129710258 129712618 129662536 129660172 NC_060925.1 CM039034.1 96.46 True local misassembly 129704125 129712033 129670429 129662537 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = -8494 129709898 129712618 129673158 129670430 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -1105596 130813555 130815008 129675097 129673644 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -9279649 140090892 140093203 129677422 129675098 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -857449 140943333 140948316 129682422 129677447 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 11226326 129709887 129717006 129689537 129682423 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -314201 130016976 130022814 129696630 129690811 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 304771 129709022 129712204 129699813 129696631 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = -1105579 130813358 130814499 129701056 129699915 NC_060925.1 CM039034.1 98.16 True local misassembly 130811783 130813357 129703099 129701525 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 3371517 127439324 127440113 129703252 129704041 NC_060925.1 CM039034.1 96.96 True indel: indel (<= 5bp) 127440443 127441048 129704373 129704978 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 2227287 129668863 129669913 129706183 129705136 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 15953 129650827 129652909 129708266 129706184 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = -9284731 138931200 138935498 129712623 129708326 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 9233866 129696569 129697333 129713388 129712624 NC_060925.1 CM039034.1 95.99 True relocation, inconsistency = -872240 130567569 130568653 129714628 129713544 NC_060925.1 CM039034.1 97.79 True local misassembly 130565144 130567104 129716589 129714629 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 895192 129666916 129669775 129719625 129716766 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = -11669712 141328011 141336245 129728247 129720008 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 11659535 129667010 129668475 129729713 129728248 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 13709 129652229 129653300 129730785 129729714 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 2216687 127434102 127435117 129731210 129732228 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 13615855 141051445 141053291 129734547 129732701 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 11335315 129708318 129715723 129742380 129734954 NC_060925.1 CM039034.1 97.0 True local misassembly 129709887 129710557 129743055 129742381 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -12002650 141708884 141712500 129746684 129743092 NC_060925.1 CM039034.1 96.1 True relocation, inconsistency = -273714 141980978 141982269 129748304 129747013 NC_060925.1 CM039034.1 97.83 True indel: indel (<= 5bp) 141980073 141980976 129749208 129748305 NC_060925.1 CM039034.1 97.46 True indel: indel (> 5bp) 141979237 141980025 129750015 129749227 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 266517 141710817 141712469 129751908 129750266 NC_060925.1 CM039034.1 95.57 True relocation, inconsistency = 11994089 129707925 129716727 129760656 129751909 NC_060925.1 CM039034.1 95.93 True relocation, inconsistency = 53519 129653864 129654405 129761198 129760657 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -11292914 140943212 140946522 129764764 129761454 NC_060925.1 CM039034.1 96.86 True local misassembly 140945282 140946522 129766340 129765100 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -110595 141051445 141055876 129770785 129766341 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 1389765 139660458 139661220 129772007 129771245 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 9946005 129707925 129714452 129778519 129772008 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = -10065166 139770774 139773090 129780784 129778520 NC_060925.1 CM039034.1 95.09 True relocation, inconsistency = 95395 139673103 139674733 129783059 129781430 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -1986386 141648995 141657546 129793455 129785002 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = 11267883 130378204 130381111 129796363 129793456 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = -11645447 142017207 142023650 129802806 129796364 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 12364969 129650764 129652237 129804280 129802807 NC_060925.1 CM039034.1 96.74 True local misassembly 129648139 129649431 129806835 129805543 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -68435 129707925 129715884 129815505 129807525 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 50820 129654205 129657104 129818418 129815506 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = -3913432 133563800 133567636 129822234 129818419 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 3209779 130353284 130353888 129822971 129822367 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -11808345 142160468 142161472 129824132 129823128 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 12484976 129672288 129675381 129827373 129824243 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -11637378 141308998 141309665 129828041 129827374 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1518928 139787101 139790069 129831036 129828042 NC_060925.1 CM039034.1 95.68 True relocation, inconsistency = -2351970 142136569 142139070 129833520 129831037 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = 2536365 139599164 139600203 129834557 129833521 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 10309349 129287294 129289814 129837153 129834558 NC_060925.1 CM039034.1 95.61 True relocation, inconsistency = 2084631 127198408 127202399 129837417 129841435 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 10535989 137740078 137741809 129843365 129841634 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -2922793 140658214 140662870 129848004 129843366 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 3316624 137336818 137339345 129852786 129850249 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 6425347 130910133 130911352 129854124 129852905 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -9752738 140658214 140662870 129858763 129854125 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -214842 140868665 140872423 129863154 129859396 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 274165 140589294 140594324 129868359 129863330 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -1574557 142163224 142163850 129868986 129868360 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 143741 142013938 142019482 129874555 129868987 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = 6445273 135567655 135568664 129875588 129874556 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 5201248 130362258 130366406 129879759 129875589 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -10925859 141286069 141286872 129881807 129881004 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 8081003 133202822 133204967 129884053 129881906 NC_060925.1 CM039034.1 96.33 True relocation, inconsistency = 3527530 129672014 129675091 129887258 129884254 NC_060925.1 CM039034.1 95.87 True relocation, inconsistency = 2183730 127485915 127487778 129887764 129889627 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 12562044 140050357 140051861 129891666 129890162 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = 9700243 130349013 130349988 129892767 129891792 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -208277 130553925 130556378 129896135 129893679 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = -10736149 141287140 141288163 129899069 129898046 NC_060925.1 CM039034.1 98.63 True local misassembly 141285787 141286671 129899954 129899070 NC_060925.1 CM039034.1 98.53 True indel: indel (> 5bp) 141284447 141285763 129901271 129899955 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 141283855 141284445 129901862 129901272 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = -880607 142159676 142162326 129906648 129903998 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 1983595 140175025 140176059 129907704 129906670 NC_060925.1 CM039034.1 96.43 True indel: indel (> 5bp) 140174286 140175024 129908466 129907728 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -1116496 141287140 141288163 129912108 129911085 NC_060925.1 CM039034.1 98.63 True local misassembly 141285787 141286671 129912993 129912109 NC_060925.1 CM039034.1 98.42 True indel: indel (> 5bp) 141284447 141285763 129914310 129912994 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 141283855 141284445 129914901 129914311 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = -880607 142159676 142162326 129919687 129917037 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 19984 142136587 142139167 129922792 129920212 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 12461027 129671431 129675405 129926871 129922947 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -8902503 138571615 138573046 129929239 129927759 NC_060925.1 CM039034.1 95.07 True relocation, inconsistency = 8852453 129717229 129718731 129931198 129929670 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = -12271068 141985781 141988296 129933714 129931199 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 687162 141296827 141298618 129935506 129933715 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 11624411 129671387 129672415 129936535 129935507 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -12467781 142136569 142139167 129939116 129936536 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 411201 141724265 141725367 129940216 129939117 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 12141949 129576221 129582308 129946310 129940224 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 321604 129245098 129254616 129955906 129946311 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -216438 129460695 129461535 129956747 129955907 NC_060925.1 CM039034.1 98.98 True local misassembly 129458136 129460319 129958931 129956748 NC_060925.1 CM039034.1 98.49 True local misassembly 129456872 129457473 129960222 129959621 NC_060925.1 CM039034.1 97.18 True indel: indel (> 5bp) 129456129 129456750 129960906 129960285 NC_060925.1 CM039034.1 97.59 True local misassembly 129454287 129455692 129962374 129960969 NC_060925.1 CM039034.1 98.58 True indel: indel (<= 5bp) 129452404 129454286 129964258 129962376 NC_060925.1 CM039034.1 98.88 True local misassembly 129453083 129454286 129966230 129965027 NC_060925.1 CM039034.1 98.01 True indel: indel (> 5bp) 129451920 129452907 129967421 129966434 NC_060925.1 CM039034.1 98.28 True local misassembly 129449923 129451544 129969043 129967422 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 327906 129115611 129121102 129975448 129969958 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -507593 129615536 129623203 129983148 129975449 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 2297785 127314837 127317358 129983541 129986035 NC_060925.1 CM039034.1 97.22 True indel: indel (> 5bp) 127317564 127323032 129986181 129991650 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 1974227 129297264 129302717 129997110 129991655 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = -329345 129625443 129626215 129998276 129997504 NC_060925.1 CM039034.1 99.22 True local misassembly 129623919 129624955 129999825 129998789 NC_060925.1 CM039034.1 98.26 True local misassembly 129621743 129623543 130002248 130000448 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 527959 129087185 129093783 130008798 130002249 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1727277 127350669 127359907 130008799 130018039 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1905735 129265643 129272321 130024747 130018040 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -120923 129382561 129386565 130028764 130024748 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -10619 129383790 129393179 130037931 130028765 NC_060925.1 CM039034.1 95.62 True relocation, inconsistency = 103630 129266114 129280159 130051968 130037932 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -346149 129610913 129612069 130053293 130052162 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = 336073 129266114 129274839 130062003 130053294 NC_060925.1 CM039034.1 96.87 True local misassembly 129256649 129259789 130065191 130062070 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -351761 129604340 129608298 130069290 130065303 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = 271755 129327202 129330000 130074673 130071875 NC_060925.1 CM039034.1 98.39 True local misassembly 129325680 129326549 130076102 130075233 NC_060925.1 CM039034.1 96.78 True indel: indel (> 5bp) 129325034 129325580 130076723 130076177 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 1965116 127350669 127359907 130076734 130085975 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1917832 129278030 129280477 130088423 130085976 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -115646 129382871 129393675 130098881 130088424 NC_060925.1 CM039034.1 95.0 True relocation, inconsistency = -85550 129461548 129467950 130105734 130099352 NC_060925.1 CM039034.1 96.74 True local misassembly 129458319 129460579 130108974 130106752 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = 68757 129386518 129389561 130111994 130108975 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -114174 129493616 129500691 130119045 130111995 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -33815 129512808 129527430 130133706 130119046 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 55812 129456486 129456995 130134216 130133707 NC_060925.1 CM039034.1 99.02 True local misassembly 129453083 129456110 130137244 130134217 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 216706 129234169 129236169 130139452 130137452 NC_060925.1 CM039034.1 98.8 True local misassembly 129225815 129232641 130147589 130140839 NC_060925.1 CM039034.1 96.08 True relocation, inconsistency = 1875411 127347615 127350403 130147590 130150374 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 1764311 129114855 129121102 130156951 130150515 NC_060925.1 CM039034.1 95.65 True relocation, inconsistency = -506213 129620257 129621067 130157762 130156952 NC_060925.1 CM039034.1 97.78 True indel: indel (> 5bp) 129619432 129620233 130158564 130157763 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 287071 129328053 129331984 130162821 130158941 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 24613 129299708 129303284 130166526 130162977 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = 176219 129116395 129123488 130173644 130166527 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -522433 129637480 129638827 130174992 130173645 NC_060925.1 CM039034.1 97.34 True indel: indel (> 5bp) 129636638 129637425 130175809 130175022 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 322384 129306309 129314253 130183756 130175810 NC_060925.1 CM039034.1 96.7 True indel: indel (> 5bp) 129301004 129306035 130188977 130183970 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 24453 129275196 129276550 130190331 130188978 NC_060925.1 CM039034.1 96.55 True local misassembly 129269419 129274779 130196294 130190834 NC_060925.1 CM039034.1 95.62 True relocation, inconsistency = 149059 129116541 129120359 130200112 130196295 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = -8838 129115662 129125378 130209775 130200113 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 1784079 127329208 127331582 130209776 130212150 NC_060925.1 CM039034.1 98.29 True indel: indel (> 5bp) 127331887 127332615 130212502 130213230 NC_060925.1 CM039034.1 97.87 True local misassembly 127338130 127345559 130213231 130220662 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 2160857 129506719 129507796 130222042 130220965 NC_060925.1 CM039034.1 97.22 True local misassembly 129505321 129506118 130223659 130222862 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = 386396 129117583 129118721 130225001 130223863 NC_060925.1 CM039034.1 98.07 True indel: indel (> 5bp) 129114943 129117559 130227618 130225002 NC_060925.1 CM039034.1 98.09 True local misassembly 129113338 129114825 130229106 130227619 NC_060925.1 CM039034.1 98.12 True indel: indel (> 5bp) 129112263 129113311 130230155 130229107 NC_060925.1 CM039034.1 98.19 True local misassembly 129110464 129112097 130231838 130230205 NC_060925.1 CM039034.1 98.96 True local misassembly 129110464 129115678 130237091 130232021 NC_060925.1 CM039034.1 95.25 True indel: indel (> 5bp) 129109590 129110221 130237905 130237274 NC_060925.1 CM039034.1 96.36 True indel: indel (> 5bp) 129109012 129109563 130238457 130237906 NC_060925.1 CM039034.1 98.01 True indel: indel (<= 5bp) 129107949 129108994 130239522 130238477 NC_060925.1 CM039034.1 97.23 True indel: indel (> 5bp) 129106823 129107483 130240660 130240000 NC_060925.1 CM039034.1 98.64 True local misassembly 129105160 129106656 130242207 130240711 NC_060925.1 CM039034.1 98.13 True indel: indel (> 5bp) 129104587 129105133 130242754 130242208 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 1744669 127350669 127359907 130242765 130252005 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 1905735 129265643 129272321 130258713 130252006 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -120923 129382561 129386565 130262730 130258714 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -10619 129379512 129393179 130276220 130262731 NC_060925.1 CM039034.1 95.63 True relocation, inconsistency = 60157 129317172 129319354 130278405 130276221 NC_060925.1 CM039034.1 97.54 True indel: indel (> 5bp) 129302239 129317014 130293404 130278504 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = -160703 129461548 129462941 130294825 130293405 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 200899 129256649 129259789 130298806 130295685 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -351761 129604340 129608298 130302905 130298918 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 504892 129097315 129099447 130305060 130302906 NC_060925.1 CM039034.1 96.15 True relocation, inconsistency = -7855926 136950184 136952499 130308092 130305802 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = -5213431 142160209 142162026 130311474 130309681 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = 2056780 140100034 140103428 130314905 130311475 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 4343659 135755218 135756279 130316062 130315001 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -316961 136067232 136072178 130321058 130316063 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 2677978 133386101 133389253 130324211 130321059 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = 1903923 131479332 131481865 130327057 130324524 NC_060925.1 CM039034.1 98.34 True indel: indel (> 5bp) 131478510 131479331 130327928 130327107 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -9518015 140990167 140996359 130334263 130328094 NC_060925.1 CM039034.1 98.4 True fake: not a misassembly (possible transposable element) 141321642 141323124 130335746 130334264 NC_060925.1 CM039034.1 97.41 True fake: not a misassembly (possible transposable element) 140989483 140995368 130341631 130335747 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -1015266 142002600 142004748 130343780 130341632 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 1514691 140485273 140487908 130346416 130343781 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -1592077 142071609 142077349 130352147 130346417 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 9778122 132290234 132293486 130355398 130352148 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -8866837 141156114 141157027 130356355 130355442 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 13707566 127442755 127444415 130356356 130358050 NC_060925.1 CM039034.1 97.41 True local misassembly 127442655 127448307 130358051 130363715 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 2888871 130337179 130343761 130370315 130363716 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -10821926 141155798 141159104 130373599 130370316 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 3744453 137405680 137411305 130379265 130373639 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 7491396 129911845 129914283 130381678 130379266 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -6732869 136641072 136642729 130385320 130383663 NC_060925.1 CM039034.1 99.1 True relocation, inconsistency = -4556713 141194470 141197784 130388635 130385321 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 1061757 140127187 140130507 130394115 130390841 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 10430698 129694687 129696413 130395921 130394191 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -11291818 140981161 140983846 130401218 130398580 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 848601 140127467 140130551 130406266 130403227 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = -489313 140615620 140616779 130407425 130406267 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 10214158 130393096 130401426 130415791 130407461 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = -6404505 136793797 136797600 130419617 130415792 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -3339332 140127187 140130551 130425514 130422195 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 10430698 129694914 129696413 130427090 130425590 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -11302667 140990167 140995195 130434455 130429476 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -669855 141655621 141657504 130438807 130436973 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 11271484 130377582 130384136 130445362 130438808 NC_060925.1 CM039034.1 98.54 True local misassembly 130377639 130382909 130450633 130445363 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = -7260482 137636123 137638120 130452731 130450634 NC_060925.1 CM039034.1 96.77 True local misassembly 137636123 137641043 130458160 130453140 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 7811101 129823363 129825021 130459821 130458161 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 2340467 127477028 127480984 130461582 130465537 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 14604892 142088022 142090086 130467605 130465538 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 12371572 129709022 129716449 130475024 130467606 NC_060925.1 CM039034.1 96.33 True relocation, inconsistency = -1105579 130813358 130814499 130476267 130475126 NC_060925.1 CM039034.1 97.99 True local misassembly 130811783 130813357 130478310 130476736 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -11281408 142086018 142093081 130485488 130478420 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = 2477395 139606467 139608622 130487710 130485489 NC_060925.1 CM039034.1 95.07 True relocation, inconsistency = 9582063 130016891 130023695 130495204 130488419 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 304771 129709022 129712119 130498302 130495205 NC_060925.1 CM039034.1 96.23 True relocation, inconsistency = -1105579 130813358 130814499 130499545 130498404 NC_060925.1 CM039034.1 98.16 True local misassembly 130811783 130813357 130501588 130500014 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 3371517 127439324 127440113 130501741 130502530 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 10167051 137607171 137611626 130507018 130502537 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = -879710 138484947 138486678 130508951 130507221 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 8083520 130394709 130401426 130515646 130508952 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -9666033 140058936 140060741 130517448 130515647 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 10406864 129650827 129652071 130518693 130517449 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -733260 130377582 130383931 130525221 130518849 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 717521 129658707 129660060 130526575 130525222 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -6670905 136321830 136329009 130534359 130527178 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = -871726 137190943 137193555 130536972 130534360 NC_060925.1 CM039034.1 98.4 True indel: indel (> 5bp) 137190026 137190882 130537938 130537082 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 6561858 130622755 130628167 130543335 130537939 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -9025672 139643422 139648389 130548332 130543373 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = 9926407 129709887 129717014 130555429 130548333 NC_060925.1 CM039034.1 96.13 True relocation, inconsistency = -11883855 141590082 141593508 130559082 130555663 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 643519 140945065 140946522 130560579 130559123 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -114615 141055593 141059679 130564666 130560580 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 1380749 139673497 139674242 130566013 130565268 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 9956796 129709887 129716700 130572825 130566014 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = -11883855 141590082 141593508 130576478 130573059 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 643519 140945282 140946522 130577759 130576519 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = -110595 141051445 141055876 130582204 130577760 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = 90690 140956920 140960295 130586027 130582664 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 11293348 129661691 129663327 130587908 130586272 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -10431513 140090892 140093203 130590233 130587909 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 5864991 134220755 134225427 130595331 130590707 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 4201355 130018556 130019399 130596175 130595332 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -11602319 141614924 141620874 130602065 130596176 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 1941817 139671749 139673106 130603400 130602066 NC_060925.1 CM039034.1 96.28 True local misassembly 139673103 139674733 130606065 130604436 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 9956357 129709887 129716727 130612922 130606084 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = -11883855 141590082 141593505 130616575 130613159 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 4945396 136641211 136644459 130620027 130616802 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -108630 136744381 136749840 130625457 130620028 NC_060925.1 CM039034.1 97.95 True fake: not a misassembly (possible transposable element) 133065691 133068704 130628618 130625632 NC_060925.1 CM039034.1 97.73 True fake: not a misassembly (possible transposable element) 136744504 136747805 130631920 130628619 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -3988378 140731766 140732881 130633036 130631921 NC_060925.1 CM039034.1 99.65 True relocation, inconsistency = 10327211 130393096 130401426 130644495 130636165 NC_060925.1 CM039034.1 98.67 True local misassembly 130393096 130398423 130649823 130644496 NC_060925.1 CM039034.1 98.6 True relocation, inconsistency = -6251959 136640531 136645054 130654347 130649824 NC_060925.1 CM039034.1 98.7 True local misassembly 136640531 136645149 130659675 130655057 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 6819867 129817723 129820663 130662642 130659676 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -580314 130394485 130397865 130666194 130662814 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -10600814 140993151 140995127 130668293 130666366 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 3573834 137412778 137419316 130674831 130668294 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = -228223 137636023 137641000 130679807 130674832 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = 7253377 130379195 130382645 130683258 130679808 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 662772 129706079 129716375 130693720 130683306 NC_060925.1 CM039034.1 96.05 True relocation, inconsistency = -12327812 142031998 142033890 130695613 130693721 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = 12352421 129677684 129678714 130697506 130696476 NC_060925.1 CM039034.1 96.61 True local misassembly 129675882 129677683 130699526 130697725 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -10099121 139773903 139775002 130700626 130699527 NC_060925.1 CM039034.1 98.01 True local misassembly 139772870 139773688 130702144 130701326 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 98107 139673039 139674654 130703868 130702253 NC_060925.1 CM039034.1 97.46 True indel: indel (> 5bp) 139671675 139672673 130705161 130704163 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 9995687 129675359 129675962 130705790 130705187 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -10980149 140651531 140655507 130709768 130705791 NC_060925.1 CM039034.1 95.93 True relocation, inconsistency = 576949 140069725 140073576 130714659 130710774 NC_060925.1 CM039034.1 96.24 True relocation, inconsistency = 10357058 129706074 129711583 130721259 130715743 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -11347369 141050553 141051163 130724149 130723539 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 11386187 129661403 129663158 130727113 130725357 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -924026 130583673 130584894 130728853 130727648 NC_060925.1 CM039034.1 95.24 True relocation, inconsistency = 598390 129982021 129985282 130732077 130728854 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = -10701019 140681784 140682693 130733334 130732424 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 11006378 129672288 129675405 130736489 130733335 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -12315717 141987460 141988004 130737034 130736490 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 2197267 139787101 139790192 130740152 130737035 NC_060925.1 CM039034.1 95.66 True relocation, inconsistency = -2212010 141996994 141999110 130742269 130740153 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 11612726 130378774 130384136 130747786 130742401 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -11758560 142136599 142137333 130748521 130747787 NC_060925.1 CM039034.1 97.78 True local misassembly 142136569 142139167 130751268 130748688 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 2534144 139601521 139602424 130752172 130751269 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 12412819 127187390 127188415 130752306 130753331 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 9506 127197922 127199482 130753332 130754919 NC_060925.1 CM039034.1 96.91 True local misassembly 127198408 127202339 130755165 130759123 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 13331930 140534737 140538218 130763072 130759591 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -775993 141307442 141310425 130766337 130763377 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = 10907705 130394288 130399732 130771809 130766342 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -11605821 141997578 141999932 130774317 130771986 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = 1984604 140010444 140012527 130776846 130774764 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 12810453 127197922 127199482 130777355 130778942 NC_060925.1 CM039034.1 96.85 True local misassembly 127198408 127202339 130779188 130783146 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 12384195 139586535 139589534 130786169 130783147 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = -1075556 140660272 140662090 130787988 130786170 NC_060925.1 CM039034.1 97.77 True fake: not a misassembly (possible transposable element) 142136569 142139167 130790705 130788125 NC_060925.1 CM039034.1 96.74 True fake: not a misassembly (possible transposable element) 140659188 140660739 130792254 130790706 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 13459191 127197922 127199482 130792769 130794356 NC_060925.1 CM039034.1 96.85 True local misassembly 127204077 127209490 130794602 130799990 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 14097239 141306730 141309296 130802557 130799991 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -833042 142136690 142139167 130805621 130803162 NC_060925.1 CM039034.1 97.2 True local misassembly 142134511 142139424 130810517 130805622 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 12459531 129673832 129674822 130811665 130810675 NC_060925.1 CM039034.1 99.29 True relocation, inconsistency = -7649256 137320509 137323010 130814275 130811743 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 7512262 129803825 129807923 130818697 130814599 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -10790631 140588581 140594455 130824572 130818698 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -751897 141338570 141340204 130826480 130824846 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 625571 140708988 140712998 130830522 130826481 NC_060925.1 CM039034.1 97.21 True local misassembly 140708052 140712998 130835501 130830523 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 41840 140665190 140666211 130836523 130835502 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 2259277 138401349 138405825 130841063 130836611 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -3588836 141988698 141989815 130842550 130841433 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -173650 142159661 142162347 130845237 130842551 NC_060925.1 CM039034.1 97.77 True local misassembly 142160468 142162347 130847436 130845557 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 4366478 137793159 137793692 130848267 130847734 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 8120177 129671541 129672579 130849707 130848670 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -11628480 141296288 141298789 130853440 130850939 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = 759745 140532741 140536542 130857242 130853441 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -1606300 142136718 142139040 130859547 130857243 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 12461496 129672014 129675091 130862682 130859678 NC_060925.1 CM039034.1 95.81 True relocation, inconsistency = -11242693 140912322 140913913 130865067 130863476 NC_060925.1 CM039034.1 97.49 True local misassembly 140910793 140912321 130867090 130865562 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 10560679 130349013 130350113 130868191 130867091 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -208277 130553924 130556276 130871560 130869205 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -10736149 141287140 141288163 130874493 130873470 NC_060925.1 CM039034.1 98.63 True local misassembly 141285787 141286671 130875378 130874494 NC_060925.1 CM039034.1 98.31 True indel: indel (> 5bp) 141284447 141285763 130876695 130875379 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 141283851 141284445 130877290 130876696 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -880630 142159676 142162326 130882095 130879445 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 19984 142136587 142139167 130885200 130882620 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 12461027 129671541 129675405 130889220 130885355 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -8740362 138410138 138410890 130890985 130890233 NC_060925.1 CM039034.1 98.14 True indel: indel (> 5bp) 138409474 138410137 130891698 130891035 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 8690312 129717229 129718731 130893657 130892129 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = -10819471 140534184 140536699 130896173 130893658 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -130081 140663002 140664222 130897436 130896216 NC_060925.1 CM039034.1 98.2 True local misassembly 140660300 140663001 130900606 130897905 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 10984730 129674275 129675405 130901901 130900771 NC_060925.1 CM039034.1 98.05 True local misassembly 129673323 129674274 130903321 130902370 NC_060925.1 CM039034.1 97.9 True indel: indel (<= 5bp) 129672677 129673320 130903965 130903322 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = 2469103 127199788 127202639 130904900 130907751 NC_060925.1 CM039034.1 99.23 True local misassembly 127203590 127206930 130908581 130911948 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 2038648 129245579 129257121 130923565 130911949 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 1933674 127305934 127311904 130923566 130929562 NC_060925.1 CM039034.1 96.8 True indel: indel (> 5bp) 127312110 127317578 130929708 130935151 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -7514 127310069 127316027 130935156 130941115 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 2141138 129457166 129458348 130942326 130941116 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = 2087173 127368481 127369105 130943214 130943838 NC_060925.1 CM039034.1 96.8 True indel: indel (> 5bp) 127369166 127370034 130943874 130944742 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 1717335 129087370 129093783 130951107 130944743 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -424452 129509721 129511821 130953208 130951108 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = -1114352 130622060 130624072 130955221 130953209 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 905286 129708124 129713981 130963856 130958014 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = -10088503 139795436 139796504 130965047 130963979 NC_060925.1 CM039034.1 98.22 True local misassembly 139794927 139795435 130966024 130965516 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 2184203 137608833 137610032 130967915 130966716 NC_060925.1 CM039034.1 97.42 True local misassembly 137607465 137608832 130969751 130968384 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = -4386377 141990224 141993841 130973347 130969752 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 11638855 130349166 130351074 130975550 130973642 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -4179191 134526521 134528053 130977386 130975854 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 1492910 133029492 133031450 130981505 130979547 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -7206059 140233455 140235265 130983601 130981791 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 10519216 129709590 129713981 130988234 130983859 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 53519 129654118 129655660 130990187 130988645 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -3920444 133566442 133567589 130998307 130997160 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 3851837 129710316 129713981 131002577 130998931 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = -9964351 139674039 139674666 131003205 131002578 NC_060925.1 CM039034.1 96.08 True relocation, inconsistency = -2040442 141706695 141712961 131010939 131004725 NC_060925.1 CM039034.1 95.43 True relocation, inconsistency = 11271945 130433817 130434687 131011872 131011002 NC_060925.1 CM039034.1 97.59 True indel: indel (<= 5bp) 130432361 130433816 131013331 131011876 NC_060925.1 CM039034.1 97.94 True local misassembly 130431192 130431876 131014016 131013332 NC_060925.1 CM039034.1 98.83 True indel: indel (> 5bp) 130430336 130431168 131014849 131014017 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 82710 130345283 130347057 131017192 131015418 NC_060925.1 CM039034.1 97.69 True indel: indel (<= 5bp) 130343935 130345282 131018541 131017194 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -5190459 135532039 135534235 131020896 131018700 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -4062723 139594209 139594759 131021449 131020899 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 4345218 135244159 135248990 131026281 131021450 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1011493 134232051 134232665 131026896 131026282 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = -7483053 141706695 141712349 131035250 131029651 NC_060925.1 CM039034.1 95.35 True relocation, inconsistency = 11355137 130349145 130350955 131037663 131035853 NC_060925.1 CM039034.1 98.4 True local misassembly 130348013 130348676 131038327 131037664 NC_060925.1 CM039034.1 97.44 True indel: indel (> 5bp) 130347157 130347989 131039160 131038328 NC_060925.1 CM039034.1 98.32 True local misassembly 130345283 130347057 131041503 131039729 NC_060925.1 CM039034.1 97.63 True indel: indel (<= 5bp) 130344111 130345282 131042676 131041505 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = -11657130 141997781 142001240 131046113 131042677 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 11396539 130594986 130596036 131052369 131051319 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 235758 130357101 130359227 131054496 131052370 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -1233050 131587265 131589024 131057382 131055623 NC_060925.1 CM039034.1 98.07 True local misassembly 131585969 131587264 131059142 131057847 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = -10500085 142081701 142083900 131063494 131061296 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 11133032 130947745 130948668 131064417 131063495 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 1235246 129703903 129712424 131072987 131064492 NC_060925.1 CM039034.1 96.21 True relocation, inconsistency = -659015 130357920 130358970 131077985 131076935 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -10184598 140539772 140542517 131080731 131077986 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -1208246 141744858 141746075 131083892 131082674 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 11343431 130393096 130401426 131092226 131083893 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -6357011 136748483 136749426 131093850 131092907 NC_060925.1 CM039034.1 98.73 True local misassembly 136745846 136747805 131096018 131094059 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 7081320 129661703 129663772 131098841 131096772 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -3905934 133565243 133567636 131101237 131098842 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 3334584 130228502 130229808 131103394 131102088 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 511911 129714968 129715884 131105017 131104101 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = -8551484 138263859 138264396 131107609 131107073 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -2658080 140917148 140919831 131112401 131109717 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -696111 141607113 141613130 131118526 131112530 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 1969961 139636236 139637151 131119441 131118527 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = -2498067 142131551 142133103 131122196 131120641 NC_060925.1 CM039034.1 96.21 True relocation, inconsistency = 11785901 130343288 130345546 131124559 131122300 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -8849897 139192283 139193184 131125461 131124560 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 3943241 135244212 135248990 131130291 131125513 NC_060925.1 CM039034.1 98.33 True local misassembly 135245467 135248990 131135672 131132149 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 5316608 129928065 129928573 131136466 131135958 NC_060925.1 CM039034.1 98.62 True indel: indel (> 5bp) 129927136 129928041 131137372 131136467 NC_060925.1 CM039034.1 97.9 True local misassembly 129925314 129926668 131138727 131137373 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -436656 130360433 130361481 131140264 131139216 NC_060925.1 CM039034.1 98.38 True local misassembly 130359464 130360130 131140931 131140265 NC_060925.1 CM039034.1 98.2 True local misassembly 130357741 130358995 131142186 131140932 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = -10854794 141207440 141211647 131147306 131143074 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 11209610 129994692 129996166 131150444 131148970 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 57727 129931682 129933524 131155727 131153885 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -2945020 132869937 132876701 131162482 131155728 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -8680937 141546462 141550873 131166891 131162483 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 11549175 129994692 129996166 131169486 131168012 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 2570921 127422330 127423770 131169487 131170927 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 2504489 129930259 129933524 131176193 131172927 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -12141987 142067021 142070729 131181396 131177710 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = 1688678 140376685 140378342 131183077 131181397 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -1165474 141534977 141538967 131190226 131186269 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = 10050773 131479285 131480896 131195194 131193534 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = -8196996 139673042 139676280 131198428 131195195 NC_060925.1 CM039034.1 95.22 True relocation, inconsistency = -1891486 141560599 141564072 131202359 131198884 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = 11881030 129675882 129679135 131206011 131202793 NC_060925.1 CM039034.1 96.65 True local misassembly 129675938 129679132 131209371 131206241 NC_060925.1 CM039034.1 95.27 True relocation, inconsistency = -16463 129687316 129692230 131214410 131209542 NC_060925.1 CM039034.1 95.97 True local misassembly 129691158 129692140 131216283 131215301 NC_060925.1 CM039034.1 98.07 True indel: indel (<= 5bp) 129688583 129690891 131218862 131216554 NC_060925.1 CM039034.1 96.49 True indel: indel (> 5bp) 129687142 129688136 131220231 131219237 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 9868 129673826 129676095 131223685 131221410 NC_060925.1 CM039034.1 98.37 True local misassembly 129675882 129678303 131226106 131223686 NC_060925.1 CM039034.1 97.32 True local misassembly 129676457 129677394 131227235 131226298 NC_060925.1 CM039034.1 97.14 True local misassembly 129673586 129675962 131229584 131227236 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -3946417 133617671 133619869 131231906 131229718 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 3033518 130579740 130584014 131236329 131232045 NC_060925.1 CM039034.1 96.09 True relocation, inconsistency = -4837773 135412679 135417512 131241172 131236330 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -1336780 136744504 136749426 131246126 131241205 NC_060925.1 CM039034.1 98.64 True local misassembly 136746276 136748474 131248309 131246127 NC_060925.1 CM039034.1 97.51 True local misassembly 136746276 136748485 131250503 131248310 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = 3870056 132870440 132876219 131256249 131250504 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 987472 131876931 131882967 131262280 131256250 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 1492794 130377403 130384136 131269014 131262281 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -5520170 135890605 135895862 131275957 131270725 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 2809830 133079293 133080774 131277439 131275958 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = -7053988 140127187 140130551 131283488 131280169 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 10430698 129694688 129696413 131285293 131283564 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -2436708 132126373 132130517 131290319 131286172 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = 2413542 129708867 129712824 131294291 131290326 NC_060925.1 CM039034.1 96.44 True local misassembly 129710227 129711519 131295788 131294496 NC_060925.1 CM039034.1 97.29 True local misassembly 129707820 129709762 131297731 131295789 NC_060925.1 CM039034.1 96.04 True indel: indel (<= 5bp) 129706952 129707819 131298602 131297735 NC_060925.1 CM039034.1 97.58 True indel: indel (<= 5bp) 129706039 129706950 131299514 131298603 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -8494 129711424 129714532 131302604 131299515 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = -7037992 136744431 136749415 131307586 131302605 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = -3386456 140127187 140130551 131311241 131307922 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 7941988 132183148 132185123 131313292 131311317 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -2445167 134621217 134628314 131320393 131313293 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 4906677 129711142 129714539 131323796 131320394 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -11237217 140941179 140948316 131330946 131323839 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 11228561 129710280 129712617 131333288 131330947 NC_060925.1 CM039034.1 96.29 True relocation, inconsistency = -4451349 134160648 134161466 131334269 131333451 NC_060925.1 CM039034.1 97.07 True local misassembly 134159113 134160647 131335898 131334364 NC_060925.1 CM039034.1 97.92 True local misassembly 134157656 134158598 131337207 131336265 NC_060925.1 CM039034.1 99.05 True indel: indel (<= 5bp) 134156655 134157654 131338207 131337208 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -5975662 140127492 140130551 131342987 131339973 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 5460713 134661438 134666778 131348329 131342988 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = -7428774 142088077 142090045 131350467 131348496 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 12373803 129708867 129714273 131355882 131350468 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = -11239457 140941179 140948316 131362997 131355890 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 11230801 129708251 129710377 131365128 131362998 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -10383892 140090892 140091930 131366389 131365341 NC_060925.1 CM039034.1 96.19 True fake: not a misassembly (possible transposable element) 127481685 127482972 131366629 131367916 NC_060925.1 CM039034.1 96.9 True fake: not a misassembly (possible transposable element) 140091047 140094305 131371187 131367917 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -39898 140126629 140130551 131375458 131371581 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = -866668 140990594 140993296 131378161 131375459 NC_060925.1 CM039034.1 98.91 True relocation, inconsistency = -655456 141643470 141646049 131380695 131378162 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 11972173 129666916 129669842 131385075 131382150 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -2238516 131896870 131905177 131393633 131385330 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 2228330 129667886 129668539 131394287 131393634 NC_060925.1 CM039034.1 97.6 True local misassembly 129666916 129669819 131397797 131394895 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -10463879 140127830 140130551 131400717 131398041 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 6742682 133381648 133385147 131404217 131400718 NC_060925.1 CM039034.1 98.86 True local misassembly 133381648 133385147 131408071 131404572 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = -2789138 136159490 136160958 131419367 131417899 NC_060925.1 CM039034.1 98.57 True local misassembly 136155869 136159021 131422520 131419368 NC_060925.1 CM039034.1 98.99 True relocation, inconsistency = 5304939 130849657 130850929 131423793 131422521 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = -10145712 140993158 140995368 131426003 131423794 NC_060925.1 CM039034.1 99.05 True relocation, inconsistency = 11312592 129679502 129680115 131427067 131426454 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = -2849096 132525820 132528366 131429845 131427299 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 2396724 130127835 130129061 131431106 131429880 NC_060925.1 CM039034.1 98.86 True indel: indel (> 5bp) 130127247 130127834 131431743 131431156 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = -11517298 141643470 141644544 131432818 131431744 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 10159959 131482357 131483220 131433972 131433109 NC_060925.1 CM039034.1 98.15 True local misassembly 131479332 131481865 131436846 131434313 NC_060925.1 CM039034.1 98.46 True indel: indel (> 5bp) 131478798 131479331 131437429 131436896 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -9498068 140975748 140976361 131438547 131437934 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 8475817 132494683 132499699 131443855 131438779 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -8497843 140991536 140992525 131444845 131443856 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = 10590109 130394711 130401426 131451610 131444846 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = -750504 131140962 131145214 131455923 131451611 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -9854690 140989515 140995368 131462059 131456207 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 501793 140486882 140487721 131462922 131462060 NC_060925.1 CM039034.1 97.47 True local misassembly 140483607 140488657 131467950 131462923 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = -41401 140520749 140524764 131472115 131468194 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 10159647 130359755 130361101 131473462 131472116 NC_060925.1 CM039034.1 98.04 True local misassembly 130357751 130359000 131474994 131473745 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = 2910378 127444540 127446920 131475426 131477806 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 14113370 141563121 141566148 131480836 131477807 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 11846110 129708867 129717010 131489000 131480837 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 2233862 127473697 127474702 131489303 131490308 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 13584860 141059830 141061139 131491885 131490576 NC_060925.1 CM039034.1 97.63 True local misassembly 141057244 141059646 131494288 131491886 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 926736 140127187 140130507 131497561 131494289 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 2486045 137639291 137641043 131499411 131497660 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 7237864 130393096 130401426 131507739 131499412 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = -10555619 140942848 140948578 131513594 131507876 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 5281091 135660306 135661184 131515045 131514167 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 5962026 129694812 129697000 131518517 131516325 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = -711114 130403935 130405380 131520508 131519063 NC_060925.1 CM039034.1 97.44 True local misassembly 130402871 130403381 131521107 131520597 NC_060925.1 CM039034.1 97.26 True indel: indel (<= 5bp) 130402147 130402870 131521834 131521111 NC_060925.1 CM039034.1 97.65 True local misassembly 130400084 130402146 131524355 131522293 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -11305977 141699942 141706060 131530492 131524356 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 2024731 139673142 139674865 131532551 131530838 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 9994725 129675882 129678297 131535086 131532671 NC_060925.1 CM039034.1 97.81 True fake: not a misassembly (possible transposable element) 129708205 129709369 131536251 131535087 NC_060925.1 CM039034.1 97.46 True fake: not a misassembly (possible transposable element) 129675886 129678297 131539118 131536707 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -954790 130629193 130630329 131540601 131539465 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 229431 130396366 130399506 131543997 131540857 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = -8374466 138767264 138769059 131547565 131545770 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 9050779 129709930 129716184 131554136 131547866 NC_060925.1 CM039034.1 96.88 True local misassembly 129714926 129716036 131555383 131554273 NC_060925.1 CM039034.1 98.29 True local misassembly 129712583 129714470 131557271 131555384 NC_060925.1 CM039034.1 97.35 True indel: indel (<= 5bp) 129710224 129712299 131559633 131557558 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = -653665 130362238 130363705 131561284 131559817 NC_060925.1 CM039034.1 98.43 True local misassembly 130361708 130362237 131562282 131561753 NC_060925.1 CM039034.1 96.98 True local misassembly 130359699 130361239 131563823 131562283 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -11717520 142074981 142077002 131566071 131564040 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 11728918 130343561 130346062 131568574 131566072 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = -6208737 136548083 136552191 131572788 131568681 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -3962124 140508619 140510206 131574376 131572789 NC_060925.1 CM039034.1 98.24 True indel: stretch of mismatches 140505068 140508440 131577903 131574555 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -15495 140516316 140520372 131582127 131578094 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -177988 140691142 140694303 131585289 131582128 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 3443333 137242900 137247710 131590241 131585388 NC_060925.1 CM039034.1 96.29 True relocation, inconsistency = -4096609 141337702 141339508 131592048 131590242 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 9421432 131913710 131916268 131594609 131592050 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1511141 130397971 130402568 131599181 131594610 NC_060925.1 CM039034.1 96.1 True relocation, inconsistency = -10683675 141076532 141081317 131604297 131599510 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -670161 141740824 141746582 131610190 131604408 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 1080235 140658513 140660588 131612266 131610191 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 1047139 139609314 139610888 131614326 131612752 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 9245045 130362927 130364049 131615668 131614546 NC_060925.1 CM039034.1 97.77 True indel: indel (> 5bp) 130361708 130362926 131616910 131615692 NC_060925.1 CM039034.1 97.79 True local misassembly 130359985 130361239 131618165 131616911 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = -6952528 137308073 137312086 131622605 131618592 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 3139884 134162443 134167861 131628355 131622933 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = -6994999 141154342 141157441 131631454 131628356 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = -130662 141284237 141284806 131632220 131631652 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -694978 141974200 141979214 131637209 131632221 NC_060925.1 CM039034.1 97.85 True local misassembly 141972410 141975975 131640797 131637210 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -198459 142168091 142170754 131643565 131640912 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 187819 141977738 141979577 131646125 131644260 NC_060925.1 CM039034.1 97.48 True fake: not a misassembly (possible transposable element) 139509090 139514069 131652989 131647981 NC_060925.1 CM039034.1 95.99 True fake: not a misassembly (possible transposable element) 141972410 141974628 131655207 131652990 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -198459 142168216 142170754 131657850 131655322 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 3717997 138445146 138450218 131662923 131657851 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -3302088 141741677 141747065 131668504 131663092 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 1078904 140659068 140662772 131672235 131668505 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 1544233 139112129 139113823 131674967 131673247 NC_060925.1 CM039034.1 96.08 True relocation, inconsistency = 8712499 130394288 130399629 131680309 131674968 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -10918090 141308203 141312279 131684461 131680408 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 13886497 127419944 127421330 131684837 131686223 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 66566 127491066 127491894 131689393 131690193 NC_060925.1 CM039034.1 96.03 True relocation, inconsistency = 14492921 141984816 141987909 131693287 131690194 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 1478285 140503329 140504155 131696489 131695663 NC_060925.1 CM039034.1 97.94 True local misassembly 140501248 140502680 131698325 131696893 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -786925 141281021 141288172 131705477 131698326 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -9371 141285787 141286438 131710082 131709431 NC_060925.1 CM039034.1 97.09 True indel: indel (> 5bp) 141284738 141285763 131711108 131710083 NC_060925.1 CM039034.1 98.44 True local misassembly 141282169 141284269 131713209 131711109 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 3499009 137780736 137782515 131715666 131713854 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = -4267802 142047098 142048537 131717106 131715667 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 6961914 135081239 135083336 131721050 131718954 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -4535924 139616184 139616941 131722029 131721272 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = 2322070 137292517 137294113 131723652 131722030 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = -491162 137780736 137782515 131726628 131724816 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = -4267802 142047098 142048537 131728068 131726629 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 7148140 134895013 134897110 131732012 131729916 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -4722150 139615236 139616941 131733913 131732234 NC_060925.1 CM039034.1 96.07 True relocation, inconsistency = -2189181 141802109 141804341 131736206 131733989 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 672730 141126142 141129378 131739443 131736207 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 607862 140516689 140518279 131741034 131739444 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 2597852 137917865 137918836 131742006 131741035 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 6972921 130940350 130943531 131746623 131743419 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -9379544 140316742 140319893 131749775 131746624 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = -201612 140516689 140518353 131751440 131749776 NC_060925.1 CM039034.1 97.22 True local misassembly 140514629 140519642 131756998 131752039 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 2376642 138137161 138137986 131757824 131756999 NC_060925.1 CM039034.1 98.46 True local misassembly 138135498 138137017 131759344 131757825 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -2372338 140503313 140507399 131763940 131759781 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 2034547 138466687 138468567 131766019 131764139 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = -3659160 142121423 142124188 131770442 131767678 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 2457712 139662958 139663481 131771195 131770672 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 3036624 136624810 136626247 131772719 131771282 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -3881735 140504333 140506543 131774931 131772721 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 10078330 130424127 130425632 131776807 131775302 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -3433965 133854509 133857989 131780390 131776910 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = 6383382 127467867 127469559 131780977 131782645 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 12549979 140019539 140022744 131785850 131782646 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 12524605 127492123 127494933 131785851 131788642 NC_060925.1 CM039034.1 96.39 True local misassembly 127495674 127497370 131790300 131792003 NC_060925.1 CM039034.1 97.95 True local misassembly 127495553 127496586 131792004 131793044 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = 14478413 141975808 141977565 131795610 131793853 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 2331125 139638978 139644623 131801263 131795670 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 8690115 130946624 130948862 131803479 131801264 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -11104838 142048305 142050493 131806638 131804448 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 1375406 140670120 140672476 131809370 131807061 NC_060925.1 CM039034.1 95.95 True relocation, inconsistency = 92204 140572861 140577915 131814449 131809371 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -336584 140905306 140909219 131818637 131814675 NC_060925.1 CM039034.1 95.57 True relocation, inconsistency = -661910 141562974 141567116 131822931 131818737 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = 654052 140904837 140906916 131827019 131824937 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -1215026 142117765 142119730 131829092 131827152 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 9857125 132259847 132260637 131829884 131829095 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 2240162 130015326 130018902 131834241 131830667 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -4822781 134835425 134838071 131836851 131834277 NC_060925.1 CM039034.1 95.16 True relocation, inconsistency = 1596660 133234325 133237622 131841285 131837994 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -7341034 140573810 140574900 131842834 131841744 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 797307 139773689 139775111 131845648 131844226 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 69824 139700412 139703534 131849094 131845979 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 56033 139641373 139642424 131852100 131851049 NC_060925.1 CM039034.1 98.1 True indel: indel (> 5bp) 139640829 139641372 131852660 131852117 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -1304035 140942728 140944863 131854798 131852661 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 8875252 132064226 132067436 131858025 131854838 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -10040019 142101519 142103899 131860722 131858371 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = 52859 142047379 142048643 131862003 131860739 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -8326 142045255 142055376 131872217 131862332 NC_060925.1 CM039034.1 95.15 True relocation, inconsistency = -10131 142045718 142055376 131881829 131872227 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 1098776 140945878 140946941 131882883 131881830 NC_060925.1 CM039034.1 96.06 True relocation, inconsistency = 11191551 129753063 129754091 131884147 131883119 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -12352856 142103866 142105418 131886200 131884648 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 2199585 139903097 139903727 131887384 131886754 NC_060925.1 CM039034.1 99.21 True relocation, inconsistency = 9865685 130033339 130036164 131891457 131888632 NC_060925.1 CM039034.1 97.7 True local misassembly 130031058 130033149 131893549 131891458 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -11231321 141259670 141260382 131896258 131895546 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 11567050 129684057 129686071 131904796 131902807 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = -2793807 132476331 132477835 131906329 131904825 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -2363045 134836292 134839375 131909413 131906330 NC_060925.1 CM039034.1 97.81 True local misassembly 134824966 134829606 131914054 131909414 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 1161888 133661324 133662883 131915808 131914249 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -9699 133666513 133670871 131920318 131915960 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -6410750 140076281 140077262 131921300 131920319 NC_060925.1 CM039034.1 99.01 True indel: indel (> 5bp) 140075094 140075903 131922536 131921727 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 2089504 137977249 137980011 131930877 131928115 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = -8467 137976987 137980011 131939606 131936582 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 8401538 129563264 129574463 131951791 131940592 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 2468456 127089675 127094807 131951792 131956897 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = -107236 126988043 126993164 131957369 131962539 NC_060925.1 CM039034.1 96.69 True fake: not a misassembly (possible transposable element) 129268336 129269211 131963884 131963008 NC_060925.1 CM039034.1 98.52 True fake: not a misassembly (possible transposable element) 126996204 126997274 131965514 131966610 NC_060925.1 CM039034.1 95.26 True relocation, inconsistency = 93705 127091265 127096555 131966896 131972186 NC_060925.1 CM039034.1 98.66 True indel: indel (> 5bp) 127096618 127097877 131972308 131973567 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = -9509 127088499 127089640 131973698 131974813 NC_060925.1 CM039034.1 95.27 True indel: indel (> 5bp) 127089847 127096805 131975079 131982036 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -41324 127055482 127065744 131982037 131992302 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -95719 126970325 126977099 131992602 131999378 NC_060925.1 CM039034.1 98.55 True local misassembly 126970401 126983800 131999379 132012751 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = 31524 127015433 127017264 132012860 132014691 NC_060925.1 CM039034.1 98.53 True indel: indel (> 5bp) 127017265 127018038 132014767 132015540 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 37368 127055407 127060495 132015541 132020629 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 37325 127097821 127099998 132020630 132022807 NC_060925.1 CM039034.1 98.73 True indel: indel (> 5bp) 127099999 127101352 132022883 132024236 NC_060925.1 CM039034.1 98.74 True indel: indel (> 5bp) 127101379 127102152 132024237 132025010 NC_060925.1 CM039034.1 98.19 True indel: stretch of mismatches 127102471 127105658 132025329 132028516 NC_060925.1 CM039034.1 98.53 True local misassembly 127105903 127107530 132028517 132030144 NC_060925.1 CM039034.1 98.77 True local misassembly 127101379 127102152 132030891 132031664 NC_060925.1 CM039034.1 98.06 True indel: indel (> 5bp) 127102153 127103494 132031688 132033029 NC_060925.1 CM039034.1 99.55 True local misassembly 127101979 127103612 132034091 132035724 NC_060925.1 CM039034.1 99.42 True local misassembly 127099444 127104801 132035725 132041099 NC_060925.1 CM039034.1 95.39 True local misassembly 127100607 127102259 132041100 132042749 NC_060925.1 CM039034.1 95.96 True local misassembly 127099495 127103612 132042750 132046887 NC_060925.1 CM039034.1 96.34 True local misassembly 127099444 127107530 132046888 132054896 NC_060925.1 CM039034.1 96.45 True local misassembly 127112999 127116400 132054897 132058244 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -10391 127106221 127110519 132058456 132062698 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -100573 127009947 127012116 132062699 132064867 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 202676 127214793 127237223 132064868 132087328 NC_060925.1 CM039034.1 99.01 True relocation, inconsistency = -22021 127215204 127237838 132087330 132109967 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = -287479 126950360 126958072 132109968 132117685 NC_060925.1 CM039034.1 96.04 True local misassembly 126963590 126979510 132117686 132133793 NC_060925.1 CM039034.1 96.07 True relocation, inconsistency = 236706 127216217 127230180 132133794 132147857 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -118503 127111887 127112496 132148067 132148676 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -142795 126969702 126976650 132148677 132155816 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 238140 127214791 127237838 132155817 132178979 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = -20689 127217150 127222083 132178980 132183939 NC_060925.1 CM039034.1 99.24 True local misassembly 127215231 127237838 132183940 132206599 NC_060925.1 CM039034.1 99.25 True local misassembly 127232315 127235893 132206600 132210178 NC_060925.1 CM039034.1 99.2 True relocation, inconsistency = -20663 127215231 127237838 132210179 132232787 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = -20689 127217150 127222083 132232788 132237737 NC_060925.1 CM039034.1 98.87 True local misassembly 127215231 127222083 132237738 132244612 NC_060925.1 CM039034.1 98.87 True local misassembly 127215231 127237865 132244613 132267279 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = -208312 127029554 127035768 132267280 132273377 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = -66757 126969012 126982389 132273378 132286888 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = 122408 127104798 127107660 132286889 132289692 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 111687 127219348 127230485 132289693 132300797 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -8286 127222200 127224887 132300798 132303524 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -135558 127089330 127091808 132303525 132305980 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 10623 127102471 127109582 132306020 132313150 NC_060925.1 CM039034.1 98.21 True fake: not a misassembly (possible transposable element) 126979037 126980456 132313151 132314570 NC_060925.1 CM039034.1 98.21 True fake: not a misassembly (possible transposable element) 127117266 127118646 132315257 132316614 NC_060925.1 CM039034.1 95.09 True relocation, inconsistency = -115602 127003045 127010504 132316615 132324155 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 11851671 138862347 138863872 132325852 132324327 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = -1182202 140043270 140044398 132327131 132326003 NC_060925.1 CM039034.1 97.79 True local misassembly 140041438 140042803 132328497 132327132 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 13007513 127027670 127033924 132328498 132334725 NC_060925.1 CM039034.1 95.83 True relocation, inconsistency = 67877 127102180 127109501 132335104 132342421 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = 13457510 140567478 140568433 132343843 132342888 NC_060925.1 CM039034.1 96.44 True indel: indel (> 5bp) 140566627 140567467 132344684 132343844 NC_060925.1 CM039034.1 96.43 True local misassembly 140564635 140566215 132346904 132345324 NC_060925.1 CM039034.1 95.64 True indel: indel (<= 5bp) 140563634 140564634 132347908 132346908 NC_060925.1 CM039034.1 95.5 True relocation, inconsistency = 10538993 130021128 130024516 132351421 132348033 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -11549326 141565373 141569364 132356500 132352511 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 11887051 129676070 129677595 132358742 132357227 NC_060925.1 CM039034.1 96.4 True fake: not a misassembly (possible transposable element) 130018852 130020770 132360909 132358998 NC_060925.1 CM039034.1 96.15 True fake: not a misassembly (possible transposable element) 129675882 129676554 132361631 132360959 NC_060925.1 CM039034.1 96.88 True local misassembly 129675344 129675917 132362387 132361814 NC_060925.1 CM039034.1 98.26 True local misassembly 129673761 129675246 132363873 132362388 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -10607426 140279168 140280588 132365892 132364472 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 5488792 134784849 134788484 132371391 132367784 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 4651517 130131947 130133331 132372776 132371392 NC_060925.1 CM039034.1 97.3 True local misassembly 130130159 130131503 132374121 132372777 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -7866954 137989312 137994332 132381897 132376902 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -497696 138485781 138486678 132383124 132382227 NC_060925.1 CM039034.1 96.77 True indel: indel (<= 5bp) 138484833 138485779 132384071 132383125 NC_060925.1 CM039034.1 98.73 True indel: indel (<= 5bp) 138484153 138484832 132384752 132384073 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = -2499736 140981161 140983888 132387434 132384753 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 3802623 137176679 137178462 132389345 132387510 NC_060925.1 CM039034.1 95.1 True relocation, inconsistency = 5821269 131348911 131355385 132395845 132389370 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 947484 130393096 130401426 132404176 132395846 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -7104 130394844 130400199 132409532 132404177 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = 724877 129666916 129669842 132412583 132409657 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = 12869 129650833 129652184 132415797 132414446 NC_060925.1 CM039034.1 97.26 True local misassembly 129653857 129655762 132417703 132415798 NC_060925.1 CM039034.1 96.96 True local misassembly 129648354 129648856 132418206 132417704 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -977993 130621804 130626241 132422733 132418312 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 910784 129704211 129709750 132429544 132424003 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = -2447674 132150705 132151698 132430724 132429731 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 4675739 127473315 127474602 132431019 132432306 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 12166657 139643175 139646419 132435552 132432307 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 9928642 129708318 129714532 132441752 132435553 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = -10426803 140127238 140130551 132449590 132446322 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 10474922 129650733 129652184 132451173 132449722 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = -10998359 140644204 140645616 132456036 132454649 NC_060925.1 CM039034.1 95.54 True relocation, inconsistency = 10926150 129710344 129716184 132463739 132457906 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = 46089 129661611 129663158 132466383 132464836 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = -12051883 141708885 141712024 132470972 132467853 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 1613531 140091526 140095071 132474780 132471255 NC_060925.1 CM039034.1 96.13 True relocation, inconsistency = 450596 139636236 139640929 132479473 132474781 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 12192339 127440481 127442264 132481106 132482889 NC_060925.1 CM039034.1 97.59 True local misassembly 127442655 127443327 132482890 132483562 NC_060925.1 CM039034.1 97.77 True indel: indel (<= 5bp) 127443329 127444118 132483563 132484352 NC_060925.1 CM039034.1 98.35 True indel: indel (> 5bp) 127444119 127444815 132484369 132485065 NC_060925.1 CM039034.1 98.71 True indel: indel (<= 5bp) 127444861 127446347 132485107 132486593 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 2912642 130359464 130359993 132487597 132487068 NC_060925.1 CM039034.1 96.98 True local misassembly 130357741 130358995 132488852 132487598 NC_060925.1 CM039034.1 98.88 True local misassembly 130349355 130353526 132493243 132489070 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -4279335 134621677 134628314 132500237 132493619 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = -7360629 141979488 141982305 132503054 132500238 NC_060925.1 CM039034.1 98.19 True local misassembly 141979488 141983314 132507073 132503248 NC_060925.1 CM039034.1 98.43 True indel: indel (> 5bp) 141975331 141979214 132511256 132507373 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 1475381 140497581 140498657 132513625 132512549 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 889026 139604317 139608554 132517891 132513626 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -1707019 141306730 141311293 132522519 132517934 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 5837424 135468589 135469305 132523210 132522520 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -6698135 142163945 142164855 132525989 132525079 NC_060925.1 CM039034.1 97.8 True indel: indel (<= 5bp) 142163432 142163944 132526503 132525991 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 875259 141281021 141288172 132533654 132526504 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 209561 141067144 141071269 132537971 132533845 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 11076385 129989514 129990758 132539216 132537972 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -10511943 140498942 140501456 132541731 132539217 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 6841958 133655604 133656983 132543111 132541732 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 3935466 129718329 129720056 132544919 132543193 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -1225872 130940350 130942840 132548769 132546280 NC_060925.1 CM039034.1 97.55 True local misassembly 130941820 130943531 132551494 132549760 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = -10925306 141862087 141867125 132556506 132551495 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 1350249 140508486 140510951 132559908 132557393 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = 3034587 137470511 137471859 132563296 132561948 NC_060925.1 CM039034.1 98.37 True local misassembly 137470007 137470510 132564268 132563765 NC_060925.1 CM039034.1 98.41 True indel: indel (> 5bp) 137468920 137469734 132565333 132564519 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 7776566 129687464 129692353 132570217 132565334 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -12431362 142117729 142118825 132571256 132570218 NC_060925.1 CM039034.1 95.56 True relocation, inconsistency = 2095359 140019590 140022369 132574034 132571257 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -894132 140910149 140913348 132577612 132574408 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 13415215 127492123 127494933 132577613 132580404 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 2199629 129698167 129698714 132581701 132581154 NC_060925.1 CM039034.1 95.83 True relocation, inconsistency = -12423353 142117587 142121519 132585566 132581702 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = 2095359 140019590 140022227 132588202 132585567 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 8254031 131764729 131765558 132589008 132588203 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = -7932114 139694661 139696842 132591189 132589009 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -327713 140019590 140022373 132593971 132591190 NC_060925.1 CM039034.1 97.27 True local misassembly 140019539 140022744 132597549 132594345 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 12524483 127492268 127494933 132597672 132600341 NC_060925.1 CM039034.1 97.19 True local misassembly 127495674 127497370 132601999 132603702 NC_060925.1 CM039034.1 98.0 True local misassembly 127495553 127496586 132603703 132604743 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = 2840755 130339254 130342908 132610311 132606656 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -11297326 141635304 141636579 132611587 132610312 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 8071008 133559815 133563848 132616063 132612035 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -8491484 142048608 142050493 132618731 132616869 NC_060925.1 CM039034.1 95.98 True relocation, inconsistency = 11099939 130946971 130948306 132620429 132619094 NC_060925.1 CM039034.1 97.38 True local misassembly 130945541 130946502 132621391 132620430 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = -4137910 135082587 135083427 132622265 132621415 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -3452443 138534370 138534895 132622925 132622400 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -661411 139193170 139194893 132625537 132623813 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -583333 139773689 139775111 132628351 132626929 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = -2263504 142027285 142036040 132638109 132629504 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 3919749 138106593 138107535 132639052 132638110 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 8394351 129705867 129712072 132645404 132639222 NC_060925.1 CM039034.1 96.26 True relocation, inconsistency = -12399057 142103714 142104906 132646614 132645422 NC_060925.1 CM039034.1 97.32 True local misassembly 142101867 142103131 132648286 132647022 NC_060925.1 CM039034.1 98.58 True indel: indel (> 5bp) 142101197 142101699 132648927 132648425 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 12344793 129753063 129756403 132652244 132648928 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = -1366142 131115718 131118214 132655731 132653235 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 532774 130580452 130582943 132658246 132655732 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 821278 129752077 129756319 132665365 132661101 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 66032 129684057 129686044 132667328 132665366 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = -5153326 134834247 134837343 132670464 132667368 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -1994237 136824865 136826247 132674083 132672701 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -805914 137623698 137626722 132681164 132678140 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 8313478 129304244 129309293 132687080 132682091 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 171970 129130095 129132273 132689233 132687081 NC_060925.1 CM039034.1 96.13 True relocation, inconsistency = 2127458 126993407 127001167 132690703 132698505 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = -10866 126990302 126993164 132698506 132701394 NC_060925.1 CM039034.1 96.67 True fake: not a misassembly (possible transposable element) 129268336 129269211 132702739 132701863 NC_060925.1 CM039034.1 98.75 True fake: not a misassembly (possible transposable element) 126996204 126997274 132704369 132705465 NC_060925.1 CM039034.1 95.17 True relocation, inconsistency = 93705 127091160 127096555 132705646 132711041 NC_060925.1 CM039034.1 98.67 True local misassembly 127093768 127097697 132711042 132714997 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -42645 127055482 127065744 132715427 132725718 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = -108075 126957670 126962292 132725719 132730288 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 95951 127058244 127068586 132730289 132740832 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -12128 127056459 127062991 132740833 132747335 NC_060925.1 CM039034.1 98.85 True local misassembly 127056264 127059423 132747336 132750495 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -90323 126969101 126976904 132750496 132758323 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 119535 127096618 127107530 132758502 132769219 NC_060925.1 CM039034.1 95.16 True relocation, inconsistency = 107534 127215252 127237838 132769407 132792045 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -13810 127224029 127236424 132792046 132804441 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -150134 127086291 127089854 132804442 132808043 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = 126739 127216594 127237820 132808044 132829330 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -280572 126957249 126958116 132829331 132830162 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 268190 127226307 127235651 132830163 132839555 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -223279 127012373 127019378 132839556 132846626 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = 195852 127215231 127237838 132846627 132869330 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = -20689 127217150 127222083 132869331 132874283 NC_060925.1 CM039034.1 99.16 True local misassembly 127215231 127219347 132874284 132878425 NC_060925.1 CM039034.1 99.14 True local misassembly 127215231 127237838 132878426 132901083 NC_060925.1 CM039034.1 99.13 True local misassembly 127230934 127237274 132901084 132907421 NC_060925.1 CM039034.1 99.1 True relocation, inconsistency = -22044 127215231 127237838 132907422 132930081 NC_060925.1 CM039034.1 99.18 True local misassembly 127230934 127237274 132930082 132936421 NC_060925.1 CM039034.1 99.13 True relocation, inconsistency = -22044 127215231 127237838 132936422 132959040 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 14924719 142162558 142164391 132960874 132959041 NC_060925.1 CM039034.1 98.32 True local misassembly 142161680 142162338 132961533 132960875 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 1653239 140505068 140508440 132964882 132961534 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 6815672 133687805 133689205 132966473 132965073 NC_060925.1 CM039034.1 98.29 True local misassembly 133686087 133687804 132968659 132966942 NC_060925.1 CM039034.1 98.6 True indel: indel (<= 5bp) 133685428 133686086 132969322 132968664 NC_060925.1 CM039034.1 98.33 True indel: indel (<= 5bp) 133684784 133685426 132969965 132969323 NC_060925.1 CM039034.1 98.44 True indel: indel (<= 5bp) 133684055 133684782 132970693 132969966 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -8456574 142134810 142140487 132976535 132970835 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 146617 141987609 141988192 132977118 132976536 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 12311616 129673322 129675384 132979789 132977727 NC_060925.1 CM039034.1 99.08 True relocation, inconsistency = -11651877 141321144 141325131 132983796 132979857 NC_060925.1 CM039034.1 95.66 True relocation, inconsistency = 11569236 129747713 129751642 132988018 132984062 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -12341669 142084063 142089381 132993338 132988019 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 924541 141154342 141158994 132998517 132993866 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -827390 141979488 141981731 133000760 132998518 NC_060925.1 CM039034.1 98.23 True indel: indel (> 5bp) 141978273 141979214 133002001 133001060 NC_060925.1 CM039034.1 98.5 True relocation, inconsistency = -188343 142162506 142166615 133006111 133002002 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 11209203 130951435 130953302 133007979 133006112 NC_060925.1 CM039034.1 97.67 True local misassembly 130948467 130951064 133011130 133008533 NC_060925.1 CM039034.1 97.84 True local misassembly 130950127 130951064 133012737 133011800 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 595138 130349067 130354950 133018685 133012776 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 674490 129671765 129674062 133021498 133019200 NC_060925.1 CM039034.1 98.35 True local misassembly 129672020 129672579 133024044 133023485 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -9441804 139112129 139113823 133025765 133024045 NC_060925.1 CM039034.1 96.08 True relocation, inconsistency = -3028326 142139358 142140454 133026832 133025766 NC_060925.1 CM039034.1 96.1 True relocation, inconsistency = 2537366 139598125 139601991 133030727 133026833 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = -7549 139601488 139604873 133034962 133031528 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 12104154 127491066 127491894 133038917 133039717 NC_060925.1 CM039034.1 95.9 True relocation, inconsistency = 13814127 141306022 141309570 133043266 133039718 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 2753620 138550059 138552157 133045606 133043511 NC_060925.1 CM039034.1 95.28 True relocation, inconsistency = -2738114 141281021 141288172 133052758 133045607 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 3452521 137824161 137826272 133057075 133054986 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -3465466 141281021 141288601 133065681 133058101 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 3807830 137468846 137470963 133070004 133067909 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -3818531 141285787 141286405 133071594 133070976 NC_060925.1 CM039034.1 97.09 True indel: indel (> 5bp) 141284738 141285763 133072620 133071595 NC_060925.1 CM039034.1 98.34 True local misassembly 141282169 141284269 133074721 133072621 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = 3126584 138153161 138154940 133077178 133075366 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = -2416565 140568286 140569725 133078618 133077179 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 5483102 135081239 135083379 133082562 133080423 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = -3323802 138400774 138404765 133086756 133082838 NC_060925.1 CM039034.1 95.82 True relocation, inconsistency = 10978784 127420995 127421985 133086761 133087751 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = 9707180 137129364 137133465 133092074 133087950 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 7430960 129694994 129696343 133095484 133094135 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -8133598 137825820 137827168 133098256 133096908 NC_060925.1 CM039034.1 98.37 True local misassembly 137825316 137825819 133099228 133098725 NC_060925.1 CM039034.1 98.41 True indel: indel (> 5bp) 137824229 137825043 133100293 133099479 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -4157306 141979302 141981534 133102526 133100294 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 7812579 134164883 134166287 133104366 133102962 NC_060925.1 CM039034.1 98.15 True local misassembly 134163258 134164417 133105526 133104367 NC_060925.1 CM039034.1 96.98 True indel: indel (<= 5bp) 134160666 134163257 133108121 133105530 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 302676 133853472 133857989 133112630 133108122 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -7718554 141568097 141570876 133116557 133113780 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 1544979 140019594 140022744 133120080 133116931 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 12524660 127492068 127494933 133120081 133122927 NC_060925.1 CM039034.1 96.43 True fake: not a misassembly (possible transposable element) 129677280 129678303 133124584 133123561 NC_060925.1 CM039034.1 97.57 True fake: not a misassembly (possible transposable element) 127495674 127497370 133124585 133126288 NC_060925.1 CM039034.1 98.0 True local misassembly 127495553 127496586 133126289 133127329 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 11660454 139159524 139160565 133130283 133129242 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -1518448 140675470 140677971 133132785 133130284 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1030787 139638978 139644623 133138438 133132845 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 8690115 130947810 130948862 133139491 133138439 NC_060925.1 CM039034.1 98.4 True indel: indel (> 5bp) 130945794 130947786 133141484 133139492 NC_060925.1 CM039034.1 96.94 True fake: not a misassembly (possible transposable element) 142105685 142108529 133144446 133141623 NC_060925.1 CM039034.1 96.18 True fake: not a misassembly (possible transposable element) 130941708 130943531 133146550 133144701 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = -2717421 133654689 133657971 133150984 133147708 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -5540029 139193170 139194717 133152533 133150985 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 8629696 130560660 130562129 133155347 133153878 NC_060925.1 CM039034.1 97.21 True local misassembly 130557601 130560191 133158793 133156203 NC_060925.1 CM039034.1 97.45 True indel: indel (> 5bp) 130556360 130557587 133160021 133158794 NC_060925.1 CM039034.1 98.13 True local misassembly 130554395 130556167 133162084 133160312 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = -1627916 132179191 132182078 133165204 133162317 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -1994989 134172710 134173583 133166674 133165801 NC_060925.1 CM039034.1 97.71 True indel: indel (<= 5bp) 134172109 134172709 133167277 133166677 NC_060925.1 CM039034.1 97.67 True indel: indel (<= 5bp) 134171075 134171855 133168309 133167529 NC_060925.1 CM039034.1 97.7 True indel: indel (> 5bp) 134170168 134171051 133169193 133168310 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -5498803 139665357 139667508 133172807 133170656 NC_060925.1 CM039034.1 96.84 True indel: indel (<= 5bp) 139664581 139665356 133173586 133172811 NC_060925.1 CM039034.1 97.94 True indel: indel (> 5bp) 139663584 139664557 133174560 133173587 NC_060925.1 CM039034.1 96.92 True indel: indel (> 5bp) 139662363 139663440 133175713 133174636 NC_060925.1 CM039034.1 97.87 True local misassembly 139660036 139661409 133177420 133176047 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -8805 139662982 139667508 133183191 133178753 NC_060925.1 CM039034.1 95.29 True local misassembly 139661673 139669213 133190666 133183192 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = -2450115 142109365 142111029 133193089 133191425 NC_060925.1 CM039034.1 97.84 True local misassembly 142107741 142108900 133194249 133193090 NC_060925.1 CM039034.1 96.21 True indel: indel (<= 5bp) 142105968 142107740 133196025 133194253 NC_060925.1 CM039034.1 96.67 True indel: indel (<= 5bp) 142105429 142105967 133196567 133196029 NC_060925.1 CM039034.1 96.66 True local misassembly 142101867 142103131 133198178 133196914 NC_060925.1 CM039034.1 98.1 True local misassembly 142102059 142103131 133199586 133198514 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 7264163 134833689 134834519 133203793 133202963 NC_060925.1 CM039034.1 96.15 True indel: indel (> 5bp) 134833150 134833688 133204358 133203820 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 1608483 133220854 133224666 133208171 133204359 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = -3652806 136870117 136871499 133211714 133210332 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -535052 137404197 137404761 133212686 133212122 NC_060925.1 CM039034.1 98.41 True indel: indel (<= 5bp) 137403074 137404195 133213808 133212687 NC_060925.1 CM039034.1 98.13 True indel: indel (> 5bp) 137402444 137403008 133214461 133213897 NC_060925.1 CM039034.1 98.94 True indel: indel (> 5bp) 137401321 137401994 133215557 133214884 NC_060925.1 CM039034.1 98.07 True indel: indel (> 5bp) 137400691 137401255 133216210 133215646 NC_060925.1 CM039034.1 98.41 True indel: indel (<= 5bp) 137399503 137400689 133217397 133216211 NC_060925.1 CM039034.1 97.56 True indel: indel (> 5bp) 137398938 137399502 133217985 133217421 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -231415 137623698 137626722 133224640 133221616 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 8313478 129307472 129309293 133227366 133225567 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = -9541 129312872 129317012 133231492 133227367 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -53818 129359191 129366689 133238980 133231493 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = 2357909 126996482 127001221 133239041 133243775 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 301003 127302672 127311636 133244223 133253213 NC_060925.1 CM039034.1 97.08 True local misassembly 127312397 127313456 133253916 133254947 NC_060925.1 CM039034.1 95.42 True relocation, inconsistency = -330942 126982515 126989360 133254948 133261788 NC_060925.1 CM039034.1 98.15 True local misassembly 126986599 126998804 133261789 133274017 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 90853 127089779 127093587 133274139 133277973 NC_060925.1 CM039034.1 97.65 True local misassembly 127088431 127089640 133278216 133279398 NC_060925.1 CM039034.1 95.37 True indel: indel (> 5bp) 127089847 127098843 133279664 133288633 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -135920 126962924 126979499 133288634 133305338 NC_060925.1 CM039034.1 95.59 True relocation, inconsistency = 78244 127057744 127060690 133305339 133308285 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -90290 126970401 126976904 133308286 133314788 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -10868 126966291 126975089 133315043 133323938 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 239370 127214460 127236424 133323939 133345689 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -122719 127113706 127117135 133345690 133349131 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -34281 127083338 127096434 133349615 133362792 NC_060925.1 CM039034.1 96.82 True indel: indel (> 5bp) 127096618 127099168 133363035 133365585 NC_060925.1 CM039034.1 98.47 True indel: indel (> 5bp) 127099347 127104666 133365823 133371138 NC_060925.1 CM039034.1 97.6 True indel: indel (> 5bp) 127104864 127107530 133371395 133374035 NC_060925.1 CM039034.1 97.04 True indel: indel (> 5bp) 127107742 127114406 133374302 133381014 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -100659 127013748 127014493 133381015 133381760 NC_060925.1 CM039034.1 98.12 True indel: indel (> 5bp) 127014520 127015384 133381761 133382625 NC_060925.1 CM039034.1 96.88 True indel: indel (<= 5bp) 127015389 127016699 133382626 133383936 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 208154 127224854 127235644 133383937 133394415 NC_060925.1 CM039034.1 95.2 True relocation, inconsistency = -277798 126957847 126958714 133394416 133395282 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 94537 127053252 127060241 133395283 133402434 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = 154549 127214791 127237838 133402435 133425590 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = -22044 127215795 127237274 133425591 133447113 NC_060925.1 CM039034.1 99.14 True relocation, inconsistency = -22044 127215231 127222083 133447114 133454015 NC_060925.1 CM039034.1 99.19 True local misassembly 127215231 127219347 133454016 133458157 NC_060925.1 CM039034.1 99.17 True local misassembly 127215231 127222083 133458158 133465060 NC_060925.1 CM039034.1 99.14 True local misassembly 127215231 127237274 133465061 133487154 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = -22044 127215231 127237838 133487155 133509813 NC_060925.1 CM039034.1 99.19 True local misassembly 127230934 127237274 133509814 133516153 NC_060925.1 CM039034.1 99.17 True relocation, inconsistency = -22044 127215231 127220702 133516154 133521667 NC_060925.1 CM039034.1 98.91 True local misassembly 127215231 127237838 133521668 133544287 NC_060925.1 CM039034.1 98.87 True relocation, inconsistency = -209745 127028094 127031531 133544288 133547582 NC_060925.1 CM039034.1 95.49 True relocation, inconsistency = 190484 127222016 127237881 133547583 133563220 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -15217 127222665 127223264 133563221 133563820 NC_060925.1 CM039034.1 97.98 True local misassembly 127220703 127230411 133563962 133573731 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -131514 127098898 127102002 133573732 133576813 NC_060925.1 CM039034.1 97.4 True indel: indel (> 5bp) 127102180 127109582 133576955 133584353 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -25975 127083608 127084477 133584354 133585223 NC_060925.1 CM039034.1 98.25 True indel: indel (> 5bp) 127084527 127085027 133585224 133585724 NC_060925.1 CM039034.1 98.8 True local misassembly 127083338 127093253 133586705 133596479 NC_060925.1 CM039034.1 96.13 True relocation, inconsistency = 346052 127439306 127441880 133596480 133599045 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -414211 127027670 127031606 133599046 133602956 NC_060925.1 CM039034.1 95.91 True relocation, inconsistency = 12736461 139769397 139771074 133605944 133604286 NC_060925.1 CM039034.1 95.6 True relocation, inconsistency = -2273162 142039898 142041439 133608605 133607064 NC_060925.1 CM039034.1 95.98 True indel: indel (<= 5bp) 142038842 142039897 133609664 133608609 NC_060925.1 CM039034.1 95.36 True relocation, inconsistency = 12047759 129987625 129991013 133613122 133609734 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -12121181 142103500 142107702 133618400 133614226 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = 1127082 140972325 140976361 133622468 133618457 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -762461 141731903 141734577 133625352 133622677 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = 1138185 140588712 140593337 133630358 133625733 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 9756199 130831073 130832512 133631798 133630359 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -9675522 140503287 140506543 133635106 133631850 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 5061057 135439715 135442229 133637621 133635107 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = 5734042 129704780 129705559 133638514 133637735 NC_060925.1 CM039034.1 98.08 True indel: indel (> 5bp) 129703656 129704779 133639661 133638538 NC_060925.1 CM039034.1 96.98 True local misassembly 129702499 129703655 133640936 133639780 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -3612355 133312663 133314701 133643127 133641089 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 5864065 127443636 127448597 133643128 133648129 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 5705851 133154535 133157690 133651300 133648216 NC_060925.1 CM039034.1 95.82 True relocation, inconsistency = 3488155 129661632 129664869 133656015 133652811 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = -321773 129981804 129983404 133657616 133656016 NC_060925.1 CM039034.1 97.21 True indel: indel (> 5bp) 129980863 129981649 133658507 133657721 NC_060925.1 CM039034.1 95.93 True indel: indel (<= 5bp) 129980139 129980859 133659228 133658508 NC_060925.1 CM039034.1 96.39 True local misassembly 129978947 129979888 133660170 133659229 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -10203472 140179390 140182418 133663199 133660171 NC_060925.1 CM039034.1 97.09 True indel: indel (> 5bp) 140178538 140179379 133664041 133663200 NC_060925.1 CM039034.1 95.13 True indel: indel (<= 5bp) 140175962 140178534 133666614 133664042 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = 537819 139635395 139638134 133669362 133666623 NC_060925.1 CM039034.1 97.04 True indel: indel (<= 5bp) 139634221 139635394 133670539 133669366 NC_060925.1 CM039034.1 97.87 True local misassembly 139632416 139633644 133672098 133670870 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 9952275 129676500 129680140 133675712 133672099 NC_060925.1 CM039034.1 96.76 True fake: not a misassembly (possible transposable element) 127473315 127474301 133676675 133677661 NC_060925.1 CM039034.1 96.75 True fake: not a misassembly (possible transposable element) 129676500 129680140 133681275 133677662 NC_060925.1 CM039034.1 96.73 True relocation, inconsistency = -341430 130009043 130017279 133690148 133681926 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -346193 130354467 130355235 133690917 133690149 NC_060925.1 CM039034.1 97.17 True indel: indel (> 5bp) 130353923 130354466 133691484 133690941 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = 673782 129676500 129680140 133695098 133691485 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -10489541 140160951 140165492 133700191 133695647 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 10468506 129686763 129692282 133705852 133700354 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -10431533 140116282 140118295 133707868 133705853 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 322093 139792205 139794184 133709852 133707873 NC_060925.1 CM039034.1 97.47 True local misassembly 139791242 139791966 133710644 133709920 NC_060925.1 CM039034.1 97.52 True fake: not a misassembly (possible transposable element) 140174022 140178224 133714931 133710727 NC_060925.1 CM039034.1 95.77 True fake: not a misassembly (possible transposable element) 139781624 139782533 133715867 133714960 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = 173248 139603996 139607988 133720218 133716255 NC_060925.1 CM039034.1 95.67 True relocation, inconsistency = -1329010 140931827 140932814 133721391 133720410 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -685726 141612707 141615363 133726212 133723581 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 2001756 139608770 139610927 133728392 133726236 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -2016338 141623743 141625107 133729757 133728393 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 11067093 130554605 130555900 133731802 133730507 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 837620 129707925 129716984 133740931 133731803 NC_060925.1 CM039034.1 96.24 True relocation, inconsistency = -10857923 140558605 140565410 133748126 133741369 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -1004291 141562303 141562895 133748722 133748127 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = 1041756 140518468 140520380 133750778 133748889 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = 862952 139654138 139655379 133752156 133750915 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 9929472 129723450 129724425 133753372 133752397 NC_060925.1 CM039034.1 97.34 True indel: indel (> 5bp) 129722237 129723426 133754562 133753373 NC_060925.1 CM039034.1 97.82 True local misassembly 129721041 129722236 133755905 133754710 NC_060925.1 CM039034.1 96.66 True indel: indel (<= 5bp) 129720327 129721040 133756622 133755909 NC_060925.1 CM039034.1 95.24 True local misassembly 129713874 129716294 133759042 133756632 NC_060925.1 CM039034.1 95.6 True fake: not a misassembly (possible transposable element) 140518858 140519892 133760077 133759043 NC_060925.1 CM039034.1 97.93 True fake: not a misassembly (possible transposable element) 129707925 129714536 133766697 133760078 NC_060925.1 CM039034.1 96.9 True local misassembly 129708205 129713792 133772681 133767135 NC_060925.1 CM039034.1 95.25 True relocation, inconsistency = -9914191 139618225 139621740 133776842 133773337 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -2529503 142146612 142147727 133777925 133776843 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 2476835 139663514 139669776 133784143 133777926 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 9984752 129675882 129678297 133787023 133784608 NC_060925.1 CM039034.1 97.81 True fake: not a misassembly (possible transposable element) 139673142 139674425 133788427 133787154 NC_060925.1 CM039034.1 97.43 True fake: not a misassembly (possible transposable element) 129675882 129678297 133790961 133788547 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -9969403 139636486 139644543 133799769 133791703 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -2468795 142103762 142104940 133801288 133800110 NC_060925.1 CM039034.1 98.3 True local misassembly 142101009 142103294 133803574 133801289 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 5275622 136819804 136821529 133809157 133807432 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = -4130850 140948254 140950653 133811570 133809158 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 4488213 136458085 136460040 133813526 133811571 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -4050274 140504333 140508337 133817552 133813548 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 9671502 130830572 130832830 133819811 133817553 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -7991655 138819983 138822128 133822055 133819910 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 725965 138091479 138092878 133824594 133823195 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 7623611 130464779 130467788 133827706 133824674 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 808917 129654184 129655861 133829384 133827707 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -10008841 139661887 139663024 133830545 133829385 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 12170338 127486316 127489695 133832399 133835781 NC_060925.1 CM039034.1 95.97 True relocation, inconsistency = 14257096 141746792 141748771 133837762 133835782 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 12094698 129650414 129651854 133839442 133838002 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -5174106 134823402 134824347 133840560 133839615 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = -5277390 140096528 140100791 133844825 133840561 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = 10380407 129707925 129716082 133853029 133844864 NC_060925.1 CM039034.1 96.91 True local misassembly 129707925 129712405 133857517 133853030 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = -3435158 133141649 133142618 133858951 133857982 NC_060925.1 CM039034.1 98.56 True local misassembly 133140060 133140740 133860098 133859418 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 3425366 129707925 129712640 133866876 133862152 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = -227312 129930781 129933524 133871332 133868589 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 214927 129714952 129715853 133872234 133871333 NC_060925.1 CM039034.1 98.39 True local misassembly 129707925 129716727 133881048 133872235 NC_060925.1 CM039034.1 96.71 True local misassembly 129707925 129712405 133885536 133881049 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 29936 129675882 129676962 133887643 133886563 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -10865858 140535459 140541609 133893866 133887774 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 13081897 127451778 127453531 133893897 133895650 NC_060925.1 CM039034.1 96.29 True indel: indel (> 5bp) 127454017 127454636 133896119 133896738 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 8093326 135549823 135551481 133898745 133897088 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 1276022 134270489 134273800 133902034 133898746 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = -7333606 141597457 141603913 133908629 133902216 NC_060925.1 CM039034.1 96.15 True relocation, inconsistency = 7373726 134222557 134223730 133909805 133908630 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -447304 134664904 134669795 133914731 133909871 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 4954832 129708124 129710071 133916682 133914732 NC_060925.1 CM039034.1 96.41 True fake: not a misassembly (possible transposable element) 129676096 129676962 133918773 133917907 NC_060925.1 CM039034.1 97.5 True fake: not a misassembly (possible transposable element) 129705715 129707810 133920872 133918774 NC_060925.1 CM039034.1 97.34 True local misassembly 129705555 129711968 133927297 133920873 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -10725 129711809 129716279 133931785 133927298 NC_060925.1 CM039034.1 97.07 True local misassembly 129704506 129716279 133943587 133931786 NC_060925.1 CM039034.1 97.03 True local misassembly 129708124 129710759 133946227 133943588 NC_060925.1 CM039034.1 97.01 True local misassembly 129712464 129714379 133948143 133946228 NC_060925.1 CM039034.1 97.51 True indel: indel (<= 5bp) 129710224 129712300 133950387 133948311 NC_060925.1 CM039034.1 97.01 True indel: indel (<= 5bp) 129707820 129710060 133952795 133950555 NC_060925.1 CM039034.1 96.52 True indel: indel (<= 5bp) 129706707 129707819 133953911 133952799 NC_060925.1 CM039034.1 97.93 True indel: indel (<= 5bp) 129706074 129706706 133954545 133953913 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -12403221 142105029 142108983 133958817 133954857 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 12388479 129714888 129716459 133960479 133958908 NC_060925.1 CM039034.1 97.46 True local misassembly 129707925 129716370 133969240 133960773 NC_060925.1 CM039034.1 96.98 True local misassembly 129707925 129710165 133971484 133969241 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -8487 129714888 129716279 133973008 133971617 NC_060925.1 CM039034.1 98.56 True local misassembly 129712464 129714432 133974977 133973009 NC_060925.1 CM039034.1 97.71 True local misassembly 129707925 129716375 133984012 133975541 NC_060925.1 CM039034.1 96.95 True local misassembly 129707925 129714645 133990744 133984013 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -10339046 140044357 140045929 133993358 133991786 NC_060925.1 CM039034.1 96.44 True indel: indel (> 5bp) 140043815 140044356 133993949 133993408 NC_060925.1 CM039034.1 98.34 True indel: indel (> 5bp) 140043084 140043739 133994605 133993950 NC_060925.1 CM039034.1 96.49 True indel: indel (> 5bp) 140041604 140042819 133996113 133994898 NC_060925.1 CM039034.1 96.3 True local misassembly 140040337 140041009 133997346 133996674 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -2109154 142146372 142149490 134000432 133997347 NC_060925.1 CM039034.1 96.57 True local misassembly 142146505 142149490 134003818 134000866 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = 1464155 140678665 140681783 134007470 134004385 NC_060925.1 CM039034.1 96.54 True local misassembly 140680600 140681783 134009087 134007904 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 7473989 133202498 133206610 134013167 134009088 NC_060925.1 CM039034.1 97.08 True local misassembly 133202498 133206049 134016686 134013168 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -8945248 142146625 142147745 134017774 134016687 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 1243463 140901144 140903161 134019792 134017775 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = 832092 140064736 140069051 134024126 134019793 NC_060925.1 CM039034.1 95.44 True relocation, inconsistency = 443366 139618225 139621369 134027258 134024127 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -1061796 140678665 140680020 134028581 134027259 NC_060925.1 CM039034.1 96.44 True local misassembly 140678665 140681783 134032100 134029015 NC_060925.1 CM039034.1 96.28 True local misassembly 140678665 140681783 134035619 134032534 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = -1471259 142146372 142149490 134039138 134036053 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 14906867 127215231 127237838 134040805 134063216 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -19308 127218531 127219294 134063217 134063980 NC_060925.1 CM039034.1 98.58 True local misassembly 127219905 127222109 134064075 134066344 NC_060925.1 CM039034.1 96.15 True relocation, inconsistency = -123228 127098882 127102002 134066345 134069442 NC_060925.1 CM039034.1 97.34 True indel: indel (> 5bp) 127102180 127109312 134069584 134076708 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -25975 127083338 127091758 134076709 134085128 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 13475301 140567478 140568433 134086502 134085547 NC_060925.1 CM039034.1 96.34 True indel: indel (> 5bp) 140566627 140567467 134087343 134086503 NC_060925.1 CM039034.1 96.43 True local misassembly 140564635 140566215 134089563 134087983 NC_060925.1 CM039034.1 95.76 True indel: indel (<= 5bp) 140563634 140564634 134090567 134089567 NC_060925.1 CM039034.1 95.5 True relocation, inconsistency = 10572496 129987625 129991013 134094080 134090692 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -9660898 139642997 139647421 134099588 134095182 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = -128720 139769397 139771162 134101898 134100143 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = -351671 140116578 140120867 134106363 134102099 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = 10436954 129676070 129679623 134109907 134106364 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -732905 130406432 130408309 134112450 134110573 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 450757 129952082 129953319 134116043 134114806 NC_060925.1 CM039034.1 97.98 True local misassembly 129949582 129951613 134118075 134116044 NC_060925.1 CM039034.1 98.13 True indel: indel (> 5bp) 129949066 129949581 134118617 134118102 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -10877616 140824329 140826317 134120970 134118982 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 13377150 127443629 127446878 134121271 134124513 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 14178132 141625071 141626143 134125646 134124574 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -359893 141978917 141983556 134131719 134127054 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 1471378 140504688 140506543 134134570 134132715 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 7280380 133219078 133224307 134139823 134134571 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 5769918 127446554 127448702 134139824 134141973 NC_060925.1 CM039034.1 97.15 True local misassembly 127445152 127448597 134141974 134145443 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 13144398 140592996 140594541 134146990 134145444 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 929809 139661887 139663186 134148313 134146991 NC_060925.1 CM039034.1 96.58 True fake: not a misassembly (possible transposable element) 142080296 142081025 134150123 134149394 NC_060925.1 CM039034.1 97.95 True fake: not a misassembly (possible transposable element) 139660205 139661375 134151262 134150125 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 9950485 129708947 129709719 134152035 134151263 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -10071893 139777086 139780839 134155786 134152036 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = 9793897 129981804 129983188 134157171 134155787 NC_060925.1 CM039034.1 96.94 True indel: indel (> 5bp) 129980863 129981649 134158062 134157276 NC_060925.1 CM039034.1 95.81 True indel: indel (<= 5bp) 129980139 129980859 134158783 134158063 NC_060925.1 CM039034.1 96.39 True local misassembly 129978855 129979888 134159817 134158784 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -5495658 135471576 135472214 134162754 134162116 NC_060925.1 CM039034.1 97.5 True indel: indel (> 5bp) 135470750 135471421 134163593 134162922 NC_060925.1 CM039034.1 98.51 True indel: indel (<= 5bp) 135470074 135470746 134164266 134163594 NC_060925.1 CM039034.1 97.18 True indel: indel (<= 5bp) 135468667 135470070 134165670 134164267 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 8026920 127437675 127441048 134166369 134169738 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 12267353 139708630 139710277 134171615 134169967 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -1577849 141285787 141286478 134172307 134171616 NC_060925.1 CM039034.1 98.36 True indel: indel (> 5bp) 141284738 141285763 134173333 134172308 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -694510 141975696 141979215 134176885 134173366 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 11142412 130831073 130833185 134179096 134176984 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -9675522 140503287 140506543 134182404 134179148 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 5061057 135439715 135442229 134184919 134182405 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 5734042 129704780 129705559 134185812 134185033 NC_060925.1 CM039034.1 98.08 True indel: indel (> 5bp) 129703656 129704779 134186959 134185836 NC_060925.1 CM039034.1 97.06 True local misassembly 129702499 129703655 134188234 134187078 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -4564125 134264642 134266554 134190217 134188304 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -7863087 142122343 142127728 134195626 134190218 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 1888966 140230092 140233376 134198912 134195627 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 554045 139674909 139676046 134200073 134198913 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = -1289126 140957355 140962604 134206734 134201504 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = -1020464 141975895 141977818 134208645 134206735 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 8015646 133956451 133957928 134212440 134210966 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = -7635867 141589942 141591927 134214816 134212831 NC_060925.1 CM039034.1 97.48 True local misassembly 141589199 141589714 134215332 134214817 NC_060925.1 CM039034.1 97.09 True indel: indel (<= 5bp) 141588480 141589198 134216054 134215336 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 11908339 129676500 129680140 134219668 134216055 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -12036972 141708997 141712923 134224146 134220217 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 11302892 130401131 130406104 134229099 134224147 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = -7981506 138381753 138382547 134229973 134229189 NC_060925.1 CM039034.1 96.26 True relocation, inconsistency = -1796472 140174022 140178224 134234178 134229974 NC_060925.1 CM039034.1 95.74 True relocation, inconsistency = 391460 139781624 139782533 134235114 134234207 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 173248 139603996 139608012 134239465 134235478 NC_060925.1 CM039034.1 95.69 True relocation, inconsistency = -1993197 141596014 141596915 134240638 134239743 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = -21539 141612707 141615363 134245459 134242828 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 11896850 129707925 129713691 134253400 134247625 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = 29861 129677105 129677626 134254359 134253838 NC_060925.1 CM039034.1 98.08 True indel: indel (> 5bp) 129675854 129677029 134255535 134254360 NC_060925.1 CM039034.1 96.85 True indel: indel (> 5bp) 129673783 129675625 134257642 134255800 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -606206 130274594 130279835 134262971 134257796 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = -9345480 139618690 139620073 134264355 134262972 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -32276 139646636 139650965 134268632 134264356 NC_060925.1 CM039034.1 95.96 True relocation, inconsistency = 6061261 133583443 133585374 134270566 134268633 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -6483489 140066347 140066867 134271151 134270631 NC_060925.1 CM039034.1 97.12 True indel: indel (> 5bp) 140065622 140066272 134271802 134271152 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = 10353514 129707925 129711823 134275990 134272087 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -9915010 139618225 139621740 134280690 134277185 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -2430509 142042250 142048516 134287115 134280908 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = 1957086 140082073 140085163 134290198 134287116 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 10395777 129682694 129685997 134293790 134290497 NC_060925.1 CM039034.1 96.46 True local misassembly 129675882 129676434 134294343 134293791 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -9999324 139673100 139674425 134296449 134295124 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -413965 140085091 140086375 134298423 134297139 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -418322 140500400 140503158 134301425 134298678 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 10823861 129675968 129676538 134301996 134301426 NC_060925.1 CM039034.1 97.68 True local misassembly 129675359 129675967 134302706 134302098 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -38303 129709194 129713661 134307181 134302707 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = -8047267 137750376 137756460 134313322 134307182 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -3080978 140827593 140829144 134317083 134315532 NC_060925.1 CM039034.1 98.71 True local misassembly 140826026 140827592 134319118 134317552 NC_060925.1 CM039034.1 97.89 True local misassembly 140824329 140825557 134320347 134319119 NC_060925.1 CM039034.1 98.78 True local misassembly 140823704 140824328 134321440 134320816 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 6528066 134291084 134293974 134325994 134323104 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -5354733 139643857 139644687 134327954 134327124 NC_060925.1 CM039034.1 98.56 True local misassembly 139642655 139643182 134328933 134328406 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 2171691 137469003 137470963 134330872 134328934 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = -287246 137748946 137752441 134338179 134334680 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 3521603 134225739 134226846 134339783 134338676 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = -6737645 140962274 140963310 134340893 134339857 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 367511 140587995 140594762 134347661 134340894 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 9756199 130831073 130831795 134348384 134347662 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -11150426 141979592 141981447 134350291 134348436 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 3157463 138819983 138822128 134352437 134350292 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 5613141 133202498 133206707 134356804 134352572 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -6460405 139659698 139662860 134360022 134356847 NC_060925.1 CM039034.1 96.2 True relocation, inconsistency = -2089065 141746792 141748762 134361994 134360023 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 1913167 139830432 139833441 134365221 134362178 NC_060925.1 CM039034.1 96.02 True relocation, inconsistency = -271707 140101254 140102138 134366106 134365222 NC_060925.1 CM039034.1 97.09 True indel: indel (> 5bp) 140100176 140101243 134367174 134366107 NC_060925.1 CM039034.1 96.25 True relocation, inconsistency = 10383948 129714049 129716057 134369366 134367345 NC_060925.1 CM039034.1 96.8 True local misassembly 129707925 129716279 134377732 134369367 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -922335 130626956 130629673 134381003 134378319 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 914233 129707925 129712640 134385809 134381086 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 29936 129675882 129676962 134387916 134386836 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -906406 130579250 130581821 134390977 134388383 NC_060925.1 CM039034.1 95.67 True relocation, inconsistency = 239921 130338284 130339184 134392021 134391122 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -9493065 139829387 139831348 134393984 134392022 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 9198368 130626964 130630701 134398038 134394302 NC_060925.1 CM039034.1 95.6 True relocation, inconsistency = -11455551 142080473 142082345 134400080 134398208 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 2387274 139691844 139693198 134401435 134400081 NC_060925.1 CM039034.1 97.35 True local misassembly 139690276 139691375 134402535 134401436 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -1653121 141340322 141342974 134405610 134402958 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = 11662322 129676311 129677999 134407299 134405611 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -35956 129708205 129711421 134411355 134408145 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = 2250027 127455841 127457033 134411754 134412946 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 6572093 134029127 134031432 134415300 134412947 NC_060925.1 CM039034.1 95.84 True relocation, inconsistency = 4352092 129676096 129676962 134416239 134415373 NC_060925.1 CM039034.1 97.59 True fake: not a misassembly (possible transposable element) 129704784 129707810 134419269 134416240 NC_060925.1 CM039034.1 97.26 True fake: not a misassembly (possible transposable element) 129676096 129676962 134420210 134419344 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -35728 129709015 129711823 134423023 134420211 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -917379 130621804 130626393 134427599 134423024 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = 908859 129706150 129712212 134434401 134428332 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -8029 129712464 129714178 134436116 134434402 NC_060925.1 CM039034.1 97.77 True indel: indel (<= 5bp) 129710224 129712300 134438360 134436284 NC_060925.1 CM039034.1 97.06 True indel: indel (<= 5bp) 129707889 129710060 134440699 134438528 NC_060925.1 CM039034.1 96.52 True relocation, inconsistency = -8487 129706075 129716375 134451049 134440700 NC_060925.1 CM039034.1 96.8 True local misassembly 129708030 129710088 134453111 134451050 NC_060925.1 CM039034.1 96.71 True fake: not a misassembly (possible transposable element) 142107404 142109009 134454720 134453112 NC_060925.1 CM039034.1 96.84 True fake: not a misassembly (possible transposable element) 129707925 129712212 134459012 134454721 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -12400980 142105029 142108904 134462894 134459013 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 12388479 129714888 129716459 134464556 134462985 NC_060925.1 CM039034.1 97.39 True local misassembly 129707925 129716370 134473316 134464850 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = -10339046 140044357 140045929 134475930 134474358 NC_060925.1 CM039034.1 96.44 True indel: indel (> 5bp) 140043815 140044356 134476521 134475980 NC_060925.1 CM039034.1 98.52 True indel: indel (> 5bp) 140043084 140043739 134477177 134476522 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 3013791 137021246 137028587 134485184 134477883 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = 5126524 131888991 131894721 134490852 134485185 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -10260123 142146372 142149113 134493561 134490853 NC_060925.1 CM039034.1 96.57 True local misassembly 142146372 142149490 134497080 134493995 NC_060925.1 CM039034.1 96.51 True local misassembly 142148204 142149490 134498800 134497514 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 2525974 139618225 139622229 134502795 134498801 NC_060925.1 CM039034.1 97.9 True local misassembly 139618701 139621753 134505838 134502796 NC_060925.1 CM039034.1 97.7 True local misassembly 139618225 139622229 134509833 134505839 NC_060925.1 CM039034.1 97.88 True local misassembly 139618623 139621753 134512954 134509834 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -176065 139790356 139794687 134517255 134512955 NC_060925.1 CM039034.1 96.17 True relocation, inconsistency = 168986 139619279 139621369 134519336 134517256 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 1615002 137998091 138004276 134525454 134519337 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = -4151611 142146372 142149490 134528728 134525666 NC_060925.1 CM039034.1 95.77 True relocation, inconsistency = 11878535 130266108 130267403 134530457 134529162 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = -11842902 142105029 142109009 134534444 134530458 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 12388479 129714888 129716459 134536106 134534535 NC_060925.1 CM039034.1 97.46 True local misassembly 129712464 129714432 134538075 134536107 NC_060925.1 CM039034.1 97.61 True indel: indel (<= 5bp) 129710224 129712300 134540319 134538243 NC_060925.1 CM039034.1 96.82 True indel: indel (<= 5bp) 129707820 129710060 134542727 134540487 NC_060925.1 CM039034.1 96.52 True indel: indel (<= 5bp) 129706707 129707819 134543843 134542731 NC_060925.1 CM039034.1 98.02 True indel: indel (<= 5bp) 129706046 129706706 134544505 134543845 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -8497 129712467 129714204 134546581 134544844 NC_060925.1 CM039034.1 98.04 True local misassembly 129710224 129712002 134548360 134546582 NC_060925.1 CM039034.1 97.53 True indel: indel (<= 5bp) 129707884 129710059 134550704 134548529 NC_060925.1 CM039034.1 95.98 True relocation, inconsistency = -8487 129707925 129716370 134559171 134550705 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -892532 130599493 130600068 134560135 134559560 NC_060925.1 CM039034.1 99.13 True indel: indel (> 5bp) 130598773 130599417 134560780 134560136 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = -9023978 139618225 139622229 134565296 134561302 NC_060925.1 CM039034.1 97.65 True local misassembly 139618701 139621753 134568339 134565297 NC_060925.1 CM039034.1 97.75 True local misassembly 139618225 139622229 134572334 134568340 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -2529503 142146505 142147727 134573524 134572335 NC_060925.1 CM039034.1 96.58 True local misassembly 142146372 142149490 134577176 134574091 NC_060925.1 CM039034.1 96.57 True relocation, inconsistency = 1464155 140678798 140681783 134580562 134577610 NC_060925.1 CM039034.1 96.48 True local misassembly 140678665 140681783 134584214 134581129 NC_060925.1 CM039034.1 96.54 True local misassembly 140678665 140681783 134587733 134584648 NC_060925.1 CM039034.1 96.57 True local misassembly 140678665 140681783 134591252 134588167 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -1471259 142146372 142149490 134594771 134591686 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 6708361 135432609 135437577 134600172 134595205 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = -4189468 139618506 139622076 134603756 134600173 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 3179985 136432958 136438520 134609286 134603757 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 995322 135432599 135437577 134614312 134609345 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 5676569 129754103 129755519 134616238 134614823 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -10927834 140678665 140681783 134619486 134616392 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 631248 140040390 140045558 134626466 134621345 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = -522006 140561671 140562395 134627191 134626467 NC_060925.1 CM039034.1 96.87 True indel: indel (<= 5bp) 140558127 140561670 134630736 134627193 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 10833464 129722304 129724662 134633095 134630737 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -4805690 134523189 134526584 134637898 134634505 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = -7450925 141970645 141973998 134641344 134638014 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 1329894 140638720 140640080 134643375 134642015 NC_060925.1 CM039034.1 98.53 True indel: indel (<= 5bp) 140636982 140638719 134645114 134643377 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 5530408 135105424 135106573 134646264 134645115 NC_060925.1 CM039034.1 98.36 True local misassembly 135104366 135104955 134646854 134646265 NC_060925.1 CM039034.1 98.64 True indel: indel (> 5bp) 135103332 135104342 134647865 134646855 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -5023327 140124868 140126649 134649656 134647875 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 10421214 129701478 129703653 134651832 134649657 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -3866000 133559845 133565487 134659458 134653823 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 3884486 129672102 129675358 134662718 134659459 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -8120253 137788582 137792330 134666514 134662743 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -1358964 139139863 139146667 134674198 134667393 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 8788723 130349670 130350763 134675668 134674575 NC_060925.1 CM039034.1 98.17 True local misassembly 130347058 130349201 134677812 134675669 NC_060925.1 CM039034.1 97.99 True indel: indel (<= 5bp) 130345283 130347057 134679588 134677814 NC_060925.1 CM039034.1 98.08 True indel: indel (<= 5bp) 130344003 130345282 134680869 134679590 NC_060925.1 CM039034.1 98.19 True local misassembly 130348007 130349328 134682165 134680870 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -9879453 140221143 140227459 134688483 134682166 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 4689833 135530660 135531309 134689132 134688484 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 5514806 130013089 130015507 134691900 134689479 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -10059036 140070608 140071499 134693417 134692526 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 9442031 130622907 130626689 134699071 134695305 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = -10323714 140940479 140946135 134705246 134699557 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 11223804 129711809 129714204 134710117 134707717 NC_060925.1 CM039034.1 97.01 True local misassembly 129708205 129716279 134718213 134710118 NC_060925.1 CM039034.1 97.0 True local misassembly 129707925 129713471 134725042 134719488 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = 29910 129675882 129676962 134727175 134726095 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -1141011 130815163 130816592 134728904 134727476 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 1101363 129707925 129713799 134734787 134728905 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 29910 129675882 129676962 134736920 134735840 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -1141011 130815163 130816592 134738649 134737221 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 1101363 129707925 129713799 134744532 134738650 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 29910 129675882 129676962 134746665 134745585 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -1141011 130813280 130816801 134750278 134746757 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -4060529 134871936 134873380 134752151 134750707 NC_060925.1 CM039034.1 98.27 True local misassembly 134870055 134871935 134754500 134752620 NC_060925.1 CM039034.1 97.77 True fake: not a misassembly (possible transposable element) 130363971 130366406 134759891 134757456 NC_060925.1 CM039034.1 97.25 True fake: not a misassembly (possible transposable element) 134868212 134869892 134761625 134759945 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 4760222 130106677 130107894 134762938 134761721 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -11537866 141641038 141642932 134766443 134764549 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 11714352 129923376 129926683 134769753 134766446 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -11058903 140978842 140980623 134773190 134771409 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 1201643 139773732 139777198 134776658 134773191 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 5146911 134626226 134626739 134777253 134776740 NC_060925.1 CM039034.1 98.44 True indel: indel (> 5bp) 134625234 134626202 134778222 134777254 NC_060925.1 CM039034.1 97.32 True local misassembly 134621135 134624965 134782106 134778276 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -7351307 141971658 141972441 134782890 134782107 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 1010369 140959202 140961288 134784980 134782891 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 11246852 129711741 129712299 134785589 134785031 NC_060925.1 CM039034.1 95.71 True local misassembly 129708205 129716279 134794085 134785990 NC_060925.1 CM039034.1 96.97 True local misassembly 129707925 129713471 134800914 134795360 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 29910 129675882 129676962 134803047 134801967 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -8244808 137918967 137920598 134804770 134803139 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 8207401 129707925 129711565 134808415 134804771 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -5162820 134868279 134870382 134810881 134808778 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 5116907 129744486 129748861 134817791 134813392 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -10383526 140124868 140126649 134820935 134819154 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 10142034 129980486 129982833 134823283 134820936 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -10518612 140495672 140498804 134826735 134823577 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -1595427 142084099 142091098 134833764 134826736 NC_060925.1 CM039034.1 96.24 True relocation, inconsistency = 4291509 137788417 137792589 134837960 134833765 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = -1357656 139140377 139145577 134843656 134838456 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = -2601187 141735569 141741563 134849627 134843657 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 12057873 129675882 129677695 134851441 134849628 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -6682354 136357003 136357928 134852674 134851749 NC_060925.1 CM039034.1 96.87 True indel: indel (> 5bp) 136355638 136356726 134854104 134853016 NC_060925.1 CM039034.1 97.15 True local misassembly 136354122 136355169 134855152 134854105 NC_060925.1 CM039034.1 98.0 True local misassembly 136353582 136354121 134856160 134855621 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 6678023 129672102 129675527 134859623 134856192 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -9972859 139640575 139644936 134863988 134859648 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = 9925638 129712464 129713742 134866461 134865183 NC_060925.1 CM039034.1 97.81 True local misassembly 129708124 129716375 134875766 134867493 NC_060925.1 CM039034.1 96.87 True local misassembly 129711905 129712603 134876469 134875767 NC_060925.1 CM039034.1 96.91 True local misassembly 129707925 129716375 134884941 134876470 NC_060925.1 CM039034.1 96.85 True fake: not a misassembly (possible transposable element) 129675882 129676962 134887074 134885994 NC_060925.1 CM039034.1 97.87 True fake: not a misassembly (possible transposable element) 129706074 129706937 134890373 134889510 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = -8435240 138137841 138141016 134893846 134890671 NC_060925.1 CM039034.1 97.61 True local misassembly 138136495 138137712 134895064 134893847 NC_060925.1 CM039034.1 97.21 True indel: indel (> 5bp) 138135530 138136419 134895954 134895065 NC_060925.1 CM039034.1 96.07 True relocation, inconsistency = -1655506 139790362 139790932 134896628 134896058 NC_060925.1 CM039034.1 97.02 True indel: indel (> 5bp) 139789455 139790361 134897558 134896652 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 10040793 129744486 129748434 134901758 134897786 NC_060925.1 CM039034.1 96.65 True relocation, inconsistency = -4891755 134630622 134633814 134907376 134904185 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = -5441559 140070372 140071499 134909185 134908058 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 10352709 129714771 129716185 134912077 134910663 NC_060925.1 CM039034.1 97.02 True local misassembly 129715191 129717014 134913901 134912078 NC_060925.1 CM039034.1 97.53 True local misassembly 129712464 129714539 134916642 134914567 NC_060925.1 CM039034.1 97.45 True indel: indel (<= 5bp) 129711522 129712300 134917588 134916810 NC_060925.1 CM039034.1 95.12 True local misassembly 129707925 129708973 134918762 134917714 NC_060925.1 CM039034.1 97.33 True local misassembly 129707925 129710060 134921006 134918871 NC_060925.1 CM039034.1 96.58 True local misassembly 129710224 129712299 134923191 134921116 NC_060925.1 CM039034.1 96.77 True local misassembly 129707979 129708973 134925257 134924263 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -10474739 140178438 140182717 134929536 134925258 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 4905797 135270854 135272471 134931323 134929706 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -4321061 139590797 139591625 134932441 134931613 NC_060925.1 CM039034.1 97.71 True indel: indel (> 5bp) 139589994 139590796 134933267 134932465 NC_060925.1 CM039034.1 98.38 True local misassembly 139587461 139589525 134935332 134933268 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 4314820 135270854 135272471 134937119 134935502 NC_060925.1 CM039034.1 98.21 True local misassembly 135270854 135272471 134940671 134939054 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 4913969 130353284 130356665 134944295 134940891 NC_060925.1 CM039034.1 97.06 True local misassembly 130353802 130355036 134945553 134944296 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -3153291 133503264 133507092 134949407 134945554 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -1404564 134906447 134907827 134950760 134949408 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = -2377913 137279242 137284350 134955927 134950770 NC_060925.1 CM039034.1 95.33 True relocation, inconsistency = 7603683 129674699 129675558 134956787 134955928 NC_060925.1 CM039034.1 98.03 True fake: not a misassembly (possible transposable element) 139642712 139647542 134961583 134956788 NC_060925.1 CM039034.1 96.79 True fake: not a misassembly (possible transposable element) 129672079 129673161 134962752 134961670 NC_060925.1 CM039034.1 98.1 True local misassembly 129674699 129675629 134963683 134962753 NC_060925.1 CM039034.1 98.09 True fake: not a misassembly (possible transposable element) 140942631 140947461 134968479 134963684 NC_060925.1 CM039034.1 96.81 True fake: not a misassembly (possible transposable element) 129672079 129673161 134969648 134968566 NC_060925.1 CM039034.1 98.18 True local misassembly 129674699 129675629 134970579 134969649 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -11930315 141598297 141605013 134977259 134970580 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -572104 142165988 142170247 134981665 134977413 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 12169295 129995092 129996177 134983266 134982181 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -8079814 138072906 138074237 134985266 134983935 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -2753937 140824332 140826317 134987777 134985792 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -464141 141284270 141288425 134991969 134987825 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -698132 141978246 141982303 134996177 134992068 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 11143816 130832683 130834308 134997924 134996299 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -11282288 142110700 142113012 135002196 134999883 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = 9840224 132266533 132270475 135006106 135002197 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -7391776 139656405 139658126 135008012 135006289 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 9090801 130564847 130565557 135008769 135008059 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -10013745 140572444 140578591 135014944 135008770 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -336117 140905092 140908560 135018413 135014945 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 10520724 130382301 130384135 135020480 135018646 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -1888185 132266533 132270485 135024400 135020481 NC_060925.1 CM039034.1 96.64 True fake: not a misassembly (possible transposable element) 130394711 130400013 135029954 135024685 NC_060925.1 CM039034.1 96.96 True fake: not a misassembly (possible transposable element) 132266533 132267381 135030803 135029955 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = -7391776 139656405 139658126 135032709 135030986 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 9090801 130562900 130565557 135035413 135032756 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -10475918 141036581 141038745 135037650 135035486 NC_060925.1 CM039034.1 97.83 True indel: indel (<= 5bp) 141034870 141036580 135039362 135037652 NC_060925.1 CM039034.1 98.6 True local misassembly 141032565 141034402 135041200 135039363 NC_060925.1 CM039034.1 98.53 True indel: indel (<= 5bp) 141031854 141032563 135041910 135041201 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 4747563 136279669 136284023 135046521 135042178 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = 6601046 129675882 129678622 135049262 135046522 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = -12400566 142073104 142076356 135052575 135049354 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = 4988948 137081747 137084002 135054984 135052729 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 6305102 130771650 130776644 135059968 135054985 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -8874622 139643199 139646271 135063031 135059969 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 9917389 129723450 129724189 135065391 135064652 NC_060925.1 CM039034.1 98.24 True indel: indel (> 5bp) 129722237 129723426 135066581 135065392 NC_060925.1 CM039034.1 97.98 True local misassembly 129721041 129722236 135067924 135066729 NC_060925.1 CM039034.1 96.99 True indel: indel (<= 5bp) 129719006 129721040 135069962 135067928 NC_060925.1 CM039034.1 97.64 True indel: indel (<= 5bp) 129718465 129719004 135070502 135069963 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -10443091 140159000 140161259 135073058 135070799 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 391041 139763641 139767507 135077373 135073510 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 9772269 129988977 129990813 135079745 135077932 NC_060925.1 CM039034.1 96.24 True relocation, inconsistency = -12105129 142086018 142091364 135087802 135082487 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = 1963209 140118341 140122155 135092269 135088456 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 474969 139639098 139642645 135096543 135092996 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 30562 139607504 139608279 135097575 135096800 NC_060925.1 CM039034.1 97.16 True indel: indel (> 5bp) 139606718 139607503 135098384 135097599 NC_060925.1 CM039034.1 98.22 True local misassembly 139603995 139606249 135100639 135098385 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -174969 139773071 139778963 135106527 135100640 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 4332054 135439118 135441016 135108426 135106528 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = -6665630 142095454 142104747 135117718 135108427 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 1119042 140972779 140976401 135121352 135117729 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1316643 139654024 139655723 135123464 135121765 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 4990621 134660314 134663249 135126530 135123618 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = 1441468 133215901 133217541 135129475 135127835 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -1622171 134835495 134838071 135131980 135129476 NC_060925.1 CM039034.1 95.11 True relocation, inconsistency = 3891129 130941708 130943531 135134664 135132815 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = -4068417 135008885 135009607 135135903 135135182 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -1452763 136458340 136461647 135139211 135135904 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = -5186256 141642965 141644094 135140842 135139713 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 7985629 133655730 133657335 135142448 135140843 NC_060925.1 CM039034.1 98.69 True local misassembly 133653909 133655217 135144368 135143060 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -3480163 137131822 137133486 135146644 135144954 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 2121517 135008885 135009607 135148063 135147342 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -1433281 136438858 136442165 135151371 135148064 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = -694152 137132029 137133009 135152352 135151372 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 2299275 134830498 134832753 135154607 135152353 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -7252538 142081115 142082423 135156528 135155220 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 890305 141188915 141190169 135158423 135157169 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 8708356 132478568 132479521 135160414 135159461 NC_060925.1 CM039034.1 99.06 True indel: indel (> 5bp) 132477979 132478541 135160977 135160415 NC_060925.1 CM039034.1 98.05 True local misassembly 132477323 132477835 135161490 135160978 NC_060925.1 CM039034.1 97.47 True indel: indel (<= 5bp) 132476332 132477321 135162480 135161491 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = -2348884 134823378 134825214 135164317 135162482 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -5304943 140126682 140127811 135165956 135164827 NC_060925.1 CM039034.1 96.37 True indel: indel (<= 5bp) 140124253 140126680 135168384 135165957 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -1959580 142080289 142083832 135171878 135168385 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = 5131512 136944030 136945616 135176625 135175039 NC_060925.1 CM039034.1 98.17 True local misassembly 136942167 136943561 135178020 135176626 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = 5630540 131301093 131303887 135188527 135185760 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 3814842 127481685 127483144 135191634 135193093 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 5742340 133226481 133227278 135194887 135194090 NC_060925.1 CM039034.1 97.87 True indel: indel (> 5bp) 133225489 133226225 135195873 135195137 NC_060925.1 CM039034.1 98.78 True local misassembly 133222616 133225345 135198603 135195874 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -2376876 135598543 135599491 135199552 135198604 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = -1709636 137306512 137308178 135201219 135199553 NC_060925.1 CM039034.1 98.08 True local misassembly 137299479 137301547 135204676 135202608 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 348741 136949390 136950715 135206024 135204699 NC_060925.1 CM039034.1 99.02 True local misassembly 136948142 136949389 135207714 135206467 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 1344243 135599960 135601986 135211653 135209627 NC_060925.1 CM039034.1 97.14 True local misassembly 135598543 135599491 135212602 135211654 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -1562842 137159728 137161384 135214259 135212603 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -143218 137299424 137301548 135217781 135215657 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 348741 136949390 136950682 135219074 135217782 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -1628097 138573929 138576931 135222632 135219630 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 8216269 130343341 130344085 135236951 135236207 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 1179897 129153613 129162922 135246770 135237473 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 2143627 127004388 127009696 135247060 135252392 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 199778 127209475 127210281 135252393 135253195 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -178879 127031435 127034591 135253228 135256384 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 2217824 129252416 129260059 135263959 135256385 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 184498 129062298 129064721 135269605 135267156 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 1947691 127112025 127113856 135270356 135272187 NC_060925.1 CM039034.1 98.09 True indel: indel (<= 5bp) 127114233 127117239 135272563 135275569 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -177242 126940357 126946845 135275929 135282393 NC_060925.1 CM039034.1 97.66 True local misassembly 126942359 126945917 135282394 135285952 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 156342 127102260 127110157 135285953 135293935 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = -85554 127024604 127025343 135293936 135294675 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 2033273 129061945 129062565 135298624 135298004 NC_060925.1 CM039034.1 97.58 True local misassembly 129060923 129061592 135299294 135298625 NC_060925.1 CM039034.1 97.11 True local misassembly 129058683 129062748 135303356 135299295 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = -11020575 140077865 140079176 135304749 135303438 NC_060925.1 CM039034.1 95.71 True relocation, inconsistency = 455635 139618701 139622229 135308317 135304750 NC_060925.1 CM039034.1 96.6 True local misassembly 139618099 139622229 135312438 135308318 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 7481569 132135053 132135664 135313915 135313304 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -5324797 137454706 137459696 135319026 135314069 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = -2167372 139618701 139622077 135322393 135319027 NC_060925.1 CM039034.1 97.88 True local misassembly 139618599 139622229 135326014 135322394 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 9474876 130138830 130143722 135330897 135326015 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 391625 129744671 129747204 135333430 135330898 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -9877556 139618225 139622226 135337445 135333431 NC_060925.1 CM039034.1 97.37 True local misassembly 139618701 139621753 135340488 135337446 NC_060925.1 CM039034.1 97.85 True local misassembly 139618225 139622229 135344483 135340489 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 6412193 133203100 133206031 135347382 135344484 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 6212234 126989996 126990857 135347391 135348252 NC_060925.1 CM039034.1 97.45 True indel: indel (> 5bp) 126991041 126991728 135348386 135349073 NC_060925.1 CM039034.1 97.67 True local misassembly 126993407 127001507 135349784 135357967 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -35355 126966153 126970359 135357968 135362173 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 2089759 129060136 129061589 135363627 135362174 NC_060925.1 CM039034.1 97.63 True local misassembly 129059229 129061609 135366007 135363628 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -13090446 142146432 142149490 135369217 135366192 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 4686242 137454706 137459696 135374668 135369711 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -2167372 139618225 139622077 135378511 135374669 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 4182410 135434112 135435814 135380181 135378512 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -3029222 138459850 138463221 135383649 135380294 NC_060925.1 CM039034.1 98.1 True local misassembly 138459867 138464684 135388926 135384148 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 4230415 134224495 134229451 135393872 135388927 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -6458301 140678725 140681783 135397910 135394885 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = 913321 139764402 139765403 135398912 135397911 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 5533892 134224495 134229948 135404926 135399474 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 4549853 129671899 129674329 135407670 135405239 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -8824978 138495701 138496876 135408869 135407671 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = -2165306 140659631 140660609 135410245 135409267 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = 10985693 129671899 129673629 135412285 135410554 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -12419303 142082435 142090738 135421056 135412749 NC_060925.1 CM039034.1 96.89 True local misassembly 142085415 142085985 135421628 135421057 NC_060925.1 CM039034.1 97.36 True local misassembly 142081967 142090738 135430401 135421629 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 12368008 129710280 129713958 135434061 135430402 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = -12446654 142156064 142156932 135434931 135434063 NC_060925.1 CM039034.1 96.66 True local misassembly 142155008 142155953 135436082 135435137 NC_060925.1 CM039034.1 97.36 True local misassembly 142153978 142155007 135437580 135436551 NC_060925.1 CM039034.1 98.06 True local misassembly 142152963 142153509 135438127 135437581 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 12438525 129709887 129713799 135442663 135438766 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -11896021 141604215 141605188 135444356 135443383 NC_060925.1 CM039034.1 97.54 True indel: indel (> 5bp) 141601558 141604093 135447003 135444468 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 14175140 127422182 127425225 135448196 135451239 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 2241690 129666916 129668626 135452949 135451240 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -10463879 140127843 140130551 135455856 135453193 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -1895670 142017120 142023512 135462251 135455857 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 12350298 129663590 129666698 135465481 135462375 NC_060925.1 CM039034.1 97.11 True local misassembly 129666916 129669842 135468762 135465838 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = -6282281 135947312 135949148 135470647 135468811 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -1693732 137637514 137641043 135474173 135470648 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = 7236087 130394485 130401426 135481115 135474174 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 45611 130347335 130348676 135482654 135481313 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 693815 129652229 129653519 135483945 135482655 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = 2201444 127449516 127450158 135484370 135485012 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 9726139 137178454 137180470 135487029 135485013 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -4842243 142016371 142020696 135491355 135487030 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 14524398 127490424 127491439 135491889 135492907 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 13468851 140960929 140962120 135494737 135493546 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 13479738 127478744 127480711 135494751 135496741 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 2229175 129709887 129717014 135503866 135496742 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = -11252735 140960240 140962082 135506251 135504406 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 10936293 130020707 130023946 135509494 135506252 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -11641114 141652476 141659946 135518750 135511369 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 4906040 136744515 136746435 135520671 135518751 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -1220043 137961881 137964557 135523374 135520672 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -1509349 139466232 139471229 135528335 135523375 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 2825792 136636497 136640439 135532278 135528336 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -5020345 141650131 141656114 135538937 135533006 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 654639 140986237 140995237 135548096 135539192 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 10588284 130394210 130397952 135551839 135548097 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 741202 129652229 129653007 135552618 135551840 NC_060925.1 CM039034.1 98.59 True relocation, inconsistency = 2216687 127434102 127435117 135553043 135554061 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 2274299 129709893 129715884 135560550 135554538 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = -11895995 141598825 141605845 135567605 135560593 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = 1949945 139647918 139648723 135568567 135567762 NC_060925.1 CM039034.1 96.03 True indel: indel (<= 5bp) 139646744 139647917 135569744 135568571 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 3748511 135893989 135897804 135573978 135570173 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -5689264 141581234 141582657 135575997 135574574 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 2812428 138765085 138767971 135579718 135576832 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -2416039 141180496 141181123 135580346 135579719 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 10827508 130348589 130352987 135584674 135580347 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = -7997983 138345564 138346470 135585682 135584776 NC_060925.1 CM039034.1 98.79 True local misassembly 138344503 138345095 135586275 135585683 NC_060925.1 CM039034.1 98.65 True indel: indel (> 5bp) 138342988 138344502 135587816 135586302 NC_060925.1 CM039034.1 98.28 True indel: indel (> 5bp) 138341468 138342707 135589291 135588052 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = 7986886 130350713 130352987 135593166 135590886 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -4837105 135182831 135187817 135598105 135593167 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 515889 134665348 134666941 135599699 135598106 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -7339935 142002866 142005282 135602116 135599700 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 14557313 127444119 127444901 135602424 135603206 NC_060925.1 CM039034.1 98.05 True fake: not a misassembly (possible transposable element) 134664995 134667097 135605309 135603207 NC_060925.1 CM039034.1 97.0 True fake: not a misassembly (possible transposable element) 127441302 127442264 135605310 135606272 NC_060925.1 CM039034.1 98.02 True local misassembly 127442655 127443327 135606273 135606945 NC_060925.1 CM039034.1 98.22 True local misassembly 127444119 127445245 135607681 135608807 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 2900329 130346981 130352987 135616233 135610214 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -83178 130428889 130430158 135617481 135616234 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -6534500 136962206 136963126 135618664 135617744 NC_060925.1 CM039034.1 98.15 True local misassembly 136961187 136961763 135619241 135618665 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -3599581 140557109 140560561 135622873 135619448 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 10846312 129706100 129709325 135627573 135624345 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -4849446 134543068 134548142 135640051 135634977 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 4862960 129677811 129679939 135642348 135640220 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -8316716 137991105 137994332 135645770 135642543 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 3441793 134543068 134548142 135652014 135646940 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = -7004719 141543426 141547512 135656395 135652289 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 9610590 131927535 131932835 135661647 135656396 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = -7661888 139586680 139589422 135664390 135661648 NC_060925.1 CM039034.1 96.0 True local misassembly 139587710 139590699 135667354 135664391 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -382503 139963413 139970212 135674128 135667355 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -1233304 141190378 141196536 135680467 135674309 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -248043 141429271 141434918 135689603 135683970 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 219216 141207778 141210054 135691880 135689604 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = 10355018 130848902 130852453 135695764 135692187 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 1117549 129727098 129731352 135700019 135695765 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -11918668 141644764 141645765 135701021 135700020 NC_060925.1 CM039034.1 99.16 True relocation, inconsistency = 11963430 129679617 129680140 135702738 135702215 NC_060925.1 CM039034.1 96.76 True indel: indel (> 5bp) 129678143 129679170 135704140 135703113 NC_060925.1 CM039034.1 96.6 True indel: indel (> 5bp) 129675882 129677838 135706366 135704410 NC_060925.1 CM039034.1 98.42 True local misassembly 129675938 129679132 135709726 135706596 NC_060925.1 CM039034.1 95.34 True relocation, inconsistency = -10508129 140182980 140183807 135710813 135709986 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 10491663 129687010 129690633 135715072 135711497 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = 8993 129677179 129677840 135715910 135715249 NC_060925.1 CM039034.1 97.58 True indel: indel (> 5bp) 129676438 129677155 135716628 135715911 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -16457 129691158 129692140 135718365 135717383 NC_060925.1 CM039034.1 97.86 True indel: indel (<= 5bp) 129688583 129690891 135720944 135718636 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 9038 129678130 129679170 135722359 135721319 NC_060925.1 CM039034.1 96.64 True indel: indel (> 5bp) 129675882 129677840 135724571 135722613 NC_060925.1 CM039034.1 98.26 True local misassembly 129678130 129679170 135725803 135724763 NC_060925.1 CM039034.1 96.64 True indel: indel (> 5bp) 129675882 129677840 135728015 135726057 NC_060925.1 CM039034.1 98.26 True local misassembly 129676347 129677394 135729254 135728207 NC_060925.1 CM039034.1 97.42 True local misassembly 129675882 129676527 135730151 135729506 NC_060925.1 CM039034.1 97.99 True local misassembly 129675882 129679135 135733595 135730378 NC_060925.1 CM039034.1 96.62 True local misassembly 129675938 129679132 135736955 135733825 NC_060925.1 CM039034.1 95.43 True relocation, inconsistency = -11888550 141562929 141563931 135738514 135737512 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = -604239 142162584 142166410 135743078 135739272 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 12486045 129675882 129676538 135743735 135743079 NC_060925.1 CM039034.1 97.44 True local misassembly 129675938 129679132 135747095 135743965 NC_060925.1 CM039034.1 95.31 True fake: not a misassembly (possible transposable element) 135543681 135545116 135748677 135747243 NC_060925.1 CM039034.1 98.32 True fake: not a misassembly (possible transposable element) 129675882 129678303 135751098 135748678 NC_060925.1 CM039034.1 97.44 True local misassembly 129676457 129677394 135752227 135751290 NC_060925.1 CM039034.1 97.23 True local misassembly 129673873 129675962 135754289 135752228 NC_060925.1 CM039034.1 96.99 True fake: not a misassembly (possible transposable element) 139201509 139202570 135755779 135754718 NC_060925.1 CM039034.1 98.21 True fake: not a misassembly (possible transposable element) 129675450 129676095 135757098 135756447 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -5179250 134847930 134852592 135763878 135759206 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = -1899876 136747179 136747805 135764505 135763879 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 4453246 132290234 132293778 135768202 135764660 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -7965103 140254599 140255336 135768940 135768203 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 2258497 137992580 137994332 135772461 135770710 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = 7591153 130393096 130401426 135780792 135772462 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 10186 130377421 130382909 135786271 135780793 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -10932200 141306558 141309620 135789334 135786272 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 4114635 137190174 137191922 135791106 135789335 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 2230683 134954560 134959490 135796026 135791107 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = -6347935 141300664 141302494 135797858 135796027 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 12351 141287314 141288312 135798857 135797859 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 2433815 138850395 138853498 135801983 135798858 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -1063206 139907945 139913600 135807629 135801984 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 5868040 134037714 134039904 135809794 135807630 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 2142667 131887557 131894218 135817286 135810623 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -4861992 136744504 136749548 135822303 135817287 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -4915411 141650867 141657453 135831254 135824765 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 11265714 130379079 130384136 135837328 135832271 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 687748 129688426 129691132 135840236 135837527 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = -4980259 134667520 134668677 135841401 135840244 NC_060925.1 CM039034.1 98.62 True indel: indel (<= 5bp) 134666669 134667519 135842254 135841404 NC_060925.1 CM039034.1 98.12 True indel: indel (<= 5bp) 134663970 134666665 135844950 135842255 NC_060925.1 CM039034.1 97.51 True indel: indel (<= 5bp) 134663392 134663969 135845530 135844953 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 4974548 129687142 129688222 135847232 135846152 NC_060925.1 CM039034.1 97.13 True indel: indel (<= 5bp) 129686367 129686875 135848011 135847503 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = -11378014 141061232 141063870 135851160 135848522 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 6221377 134834154 134839400 135856861 135851615 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -2225933 137055210 137056921 135861712 135860027 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 2826055 134227500 134228143 135863367 135862724 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = 4531086 129692442 129696413 135867333 135863368 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = -10380997 140071872 140072595 135868901 135868177 NC_060925.1 CM039034.1 96.35 True relocation, inconsistency = 48422 140019439 140023449 135872912 135868902 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -1551843 141568478 141570733 135875716 135873461 NC_060925.1 CM039034.1 97.21 True local misassembly 141567946 141571956 135881868 135877858 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 1446930 140118212 140120338 135884676 135882546 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 4436185 135680597 135681617 135886108 135885086 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 1487660 134189994 134192102 135889068 135886943 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -5751509 139938604 139941502 135891971 135889069 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 5708456 134224135 134230147 135897983 135891972 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -7508425 141726946 141729441 135903597 135901102 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = 11436145 130288973 130290779 135905424 135903619 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -8192706 138474571 138481678 135912528 135905425 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -2810063 141283311 141284633 135913851 135912529 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 11349027 129932108 129934283 135916026 135913852 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -920705 130849375 130852453 135919464 135916386 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = -10035313 140879702 140884687 135924473 135919465 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 9687775 131185451 131191628 135930948 135924772 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 333353 130848605 130852097 135934438 135930949 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -10147956 140990727 140996015 135940199 135934984 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 10780557 130207721 130210169 135942628 135940200 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -6540765 136744504 136748485 135946609 135942629 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -897256 137636023 137641043 135952343 135947326 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 25199 137607270 137610823 135955922 135952344 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 857429 136745220 136749840 135960516 135955923 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -97440 136840013 136842448 135963163 135960728 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = -1157915 137989312 137994332 135971754 135966759 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 7606666 130379330 130382645 135975070 135971755 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -11297873 141672679 141677094 135979595 135975179 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 12020106 129650833 129652184 135981335 135979984 NC_060925.1 CM039034.1 97.26 True local misassembly 129653857 129655762 135983241 135981336 NC_060925.1 CM039034.1 97.01 True local misassembly 129648354 129648856 135983744 135983242 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -1166457 130813174 130814725 135985381 135983830 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 246511 130563190 130566101 135988855 135985943 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -9529714 140090892 140092622 135990877 135989137 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -970272 141055572 141061139 135996476 135990902 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 924961 140127187 140130551 135999855 135996536 NC_060925.1 CM039034.1 97.24 True local misassembly 140127187 140128959 136001631 135999856 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = -1962270 142082418 142089381 136008665 136001707 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 2417417 139660078 139661779 136013588 136011887 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 9981235 129676008 129678281 136016396 136014150 NC_060925.1 CM039034.1 95.82 True relocation, inconsistency = -10118907 139789875 139794914 136021437 136016397 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = 12291238 127495674 127497370 136022704 136024407 NC_060925.1 CM039034.1 97.95 True local misassembly 127495553 127496586 136024408 136025448 NC_060925.1 CM039034.1 95.73 True relocation, inconsistency = 2840755 130339254 130342908 136031016 136027361 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -11297326 141635304 141636579 136032292 136031017 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 1990233 139638978 139644623 136038333 136032740 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 8690115 130946624 130948862 136040549 136038334 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = -2572387 133516823 133518174 136042738 136041386 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 225836 133289850 133290643 136043875 136043082 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = -8355575 141640570 141645424 136048634 136043876 NC_060925.1 CM039034.1 95.24 True relocation, inconsistency = 2446046 139193170 139194523 136049989 136048635 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 8629696 130560660 130562129 136052803 136051334 NC_060925.1 CM039034.1 97.28 True local misassembly 130557601 130560191 136056249 136053659 NC_060925.1 CM039034.1 97.45 True indel: indel (> 5bp) 130556388 130557587 136057449 136056250 NC_060925.1 CM039034.1 98.25 True local misassembly 130554395 130556167 136059540 136057768 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = 536853 130015330 130017472 136061752 136059610 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -9758541 139771491 139773220 136064132 136062403 NC_060925.1 CM039034.1 97.34 True local misassembly 139770630 139771188 136064691 136064133 NC_060925.1 CM039034.1 97.85 True indel: indel (> 5bp) 139769417 139770616 136065891 136064692 NC_060925.1 CM039034.1 98.17 True local misassembly 139767659 139769196 136067747 136066210 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 9749882 130015326 130017472 136070198 136068052 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = 296749 129716661 129718256 136072130 136070519 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = -11885755 141600871 141602415 136073676 136072131 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -429187 142026879 142030057 136076829 136073677 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = 12314744 129705867 129712072 136083074 136076892 NC_060925.1 CM039034.1 96.25 True relocation, inconsistency = -12399057 142103714 142104906 136084284 136083092 NC_060925.1 CM039034.1 97.07 True local misassembly 142101867 142103131 136085956 136084692 NC_060925.1 CM039034.1 98.66 True indel: indel (> 5bp) 142101012 142101699 136086782 136086095 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 12343912 129753063 129754091 136090819 136089791 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -12352856 142103476 142105415 136093263 136091323 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 2304470 139797946 139798704 136094323 136093565 NC_060925.1 CM039034.1 98.02 True local misassembly 139795116 139797756 136096964 136094324 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 10036085 129752874 129755695 136103143 136100300 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = -5084726 134834247 134837599 136106473 136103144 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -3152352 137976987 137980011 136116085 136113061 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 10966759 127006305 127009620 136116693 136119957 NC_060925.1 CM039034.1 95.66 True relocation, inconsistency = 2497650 129507536 129515284 136127958 136120223 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 141731 129359191 129365804 136134535 136127959 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 2402851 126951487 126956266 136134609 136139383 NC_060925.1 CM039034.1 97.02 True fake: not a misassembly (possible transposable element) 126979482 126981005 136139384 136140931 NC_060925.1 CM039034.1 95.23 True fake: not a misassembly (possible transposable element) 126953165 126956347 136141631 136144834 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 134601 127091160 127096555 136145046 136150438 NC_060925.1 CM039034.1 98.59 True indel: indel (> 5bp) 127096806 127100424 136150748 136154392 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -12238 127088431 127089640 136154637 136155819 NC_060925.1 CM039034.1 95.45 True indel: indel (> 5bp) 127089847 127100424 136156085 136166687 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -9541 127092576 127100424 136168380 136176253 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -12238 127088431 127089640 136176498 136177680 NC_060925.1 CM039034.1 95.45 True indel: indel (> 5bp) 127089847 127100424 136177946 136188548 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -12238 127088431 127089640 136188793 136189975 NC_060925.1 CM039034.1 95.45 True indel: indel (> 5bp) 127089847 127100424 136190241 136200843 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -53765 127046904 127048378 136201088 136202535 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 41468 127089847 127096805 136202536 136209493 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -41324 127055482 127065744 136209494 136219785 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -97100 126968645 126974267 136219786 136225410 NC_060925.1 CM039034.1 98.69 True indel: indel (> 5bp) 126974653 126979752 136225737 136231006 NC_060925.1 CM039034.1 96.19 True relocation, inconsistency = -9428 126970325 126982145 136231007 136242825 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 75541 127057687 127060690 136242826 136245829 NC_060925.1 CM039034.1 98.89 True relocation, inconsistency = -90290 126970401 126976904 136245830 136252332 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 126977100 126980404 136252587 136255891 NC_060925.1 CM039034.1 98.49 True indel: indel (> 5bp) 126980405 126984652 136255967 136260214 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 20680 127005333 127006304 136260215 136261186 NC_060925.1 CM039034.1 98.89 True indel: indel (> 5bp) 127006305 127007098 136261213 136262006 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 208125 127215252 127237838 136262035 136284673 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -268263 126969576 126979828 136284674 136295116 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = 236765 127216594 127220702 136295117 136299273 NC_060925.1 CM039034.1 97.68 True local misassembly 127215231 127237838 136299274 136322095 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -132343 127105496 127110465 136322096 136327060 NC_060925.1 CM039034.1 96.19 True relocation, inconsistency = 102077 127212543 127228799 136327061 136343486 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = -16452 127212557 127237201 136343696 136368426 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -22047 127215352 127219347 136368624 136372639 NC_060925.1 CM039034.1 99.15 True local misassembly 127215231 127237838 136372640 136395295 NC_060925.1 CM039034.1 99.14 True relocation, inconsistency = -22044 127215795 127220702 136395296 136400254 NC_060925.1 CM039034.1 99.18 True local misassembly 127215231 127237274 136400255 136422339 NC_060925.1 CM039034.1 99.17 True relocation, inconsistency = -22044 127215231 127237838 136422340 136444996 NC_060925.1 CM039034.1 99.14 True local misassembly 127233696 127237274 136444997 136448575 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = -22044 127215231 127237838 136448576 136471235 NC_060925.1 CM039034.1 99.18 True relocation, inconsistency = -16572 127221267 127237274 136471236 136487241 NC_060925.1 CM039034.1 99.17 True relocation, inconsistency = -22044 127215231 127237838 136487242 136509851 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 183616 127421455 127423948 136509852 136512344 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 13079341 140503290 140508440 136517471 136512345 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -1498329 141999220 142001618 136519869 136517472 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -141268 142134810 142140487 136525570 136519870 NC_060925.1 CM039034.1 97.12 True local misassembly 142139299 142140454 136527917 136526762 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 123686 142010651 142014638 136532831 136528892 NC_060925.1 CM039034.1 95.69 True relocation, inconsistency = 12258743 129747713 129751642 136537053 136533097 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -12341669 142084063 142089381 136542373 136537054 NC_060925.1 CM039034.1 97.03 True relocation, inconsistency = 10584032 131496688 131499557 136545749 136542847 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -10486870 141979488 141983557 136549818 136545750 NC_060925.1 CM039034.1 98.23 True local misassembly 141979488 141983314 136553837 136550012 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1467332 140506842 140511962 136559125 136554031 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 2027029 138475568 138479812 136563469 136559126 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 8801406 129673241 129674062 136564391 136563569 NC_060925.1 CM039034.1 99.27 True relocation, inconsistency = -9929849 139597905 139602362 136569578 136565119 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 9888030 129705820 129709325 136573639 136570128 NC_060925.1 CM039034.1 97.15 True local misassembly 129706100 129707592 136575132 136573640 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -4849445 134543068 134548159 136587609 136582518 NC_060925.1 CM039034.1 98.74 True relocation, inconsistency = 4862960 129677811 129679939 136589906 136587778 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = -11208874 140885093 140886415 136591498 136590176 NC_060925.1 CM039034.1 98.87 True local misassembly 140883761 140884624 136592362 136591499 NC_060925.1 CM039034.1 99.07 True indel: indel (> 5bp) 140882935 140883760 136593211 136592386 NC_060925.1 CM039034.1 99.1 True local misassembly 140880601 140884687 136597321 136593212 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = 8947765 131927535 131932835 136602573 136597322 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -7661888 139586680 139589422 136605316 136602574 NC_060925.1 CM039034.1 95.97 True relocation, inconsistency = -14552 139596334 139601231 136610263 136605317 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 3780702 135810174 135815195 136615672 136610700 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -553524 136358106 136363513 136621264 136615857 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 76917 136275016 136281159 136627380 136621294 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -5159618 141429271 141434633 136632725 136627381 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 219216 141207498 141210054 136635308 136632726 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 10355044 130848902 130852453 136638886 136635309 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 1117549 129727098 129731352 136643140 136638887 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = -11918668 141644764 141645765 136644142 136643141 NC_060925.1 CM039034.1 99.16 True relocation, inconsistency = 11963508 129675879 129678949 136649519 136646449 NC_060925.1 CM039034.1 97.49 True local misassembly 129675882 129678714 136652938 136650141 NC_060925.1 CM039034.1 96.68 True local misassembly 129675938 129679132 136656298 136653168 NC_060925.1 CM039034.1 95.34 True relocation, inconsistency = -10508129 140182980 140183807 136657385 136656558 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 10491663 129687010 129690633 136661644 136658069 NC_060925.1 CM039034.1 95.78 True relocation, inconsistency = 8993 129677179 129677840 136662482 136661821 NC_060925.1 CM039034.1 97.73 True indel: indel (> 5bp) 129676438 129677155 136663200 136662483 NC_060925.1 CM039034.1 97.63 True fake: not a misassembly (possible transposable element) 139201393 139202570 136665132 136663955 NC_060925.1 CM039034.1 98.05 True fake: not a misassembly (possible transposable element) 129675450 129676095 136666335 136665684 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -5179250 134847940 134852592 136673105 136668443 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -1900345 136744504 136748194 136676885 136673196 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 3268547 133470017 133475950 136682751 136676892 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -6288242 139755901 139758258 136685099 136682752 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 2114857 137637514 137641043 136688627 136685100 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = 7236087 130393096 130401426 136696958 136688628 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = 13738 130377530 130379357 136698776 136696959 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = -10925074 141300664 141302603 136700717 136698777 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 12351 141287249 141288312 136701781 136700718 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 4095159 137190174 137191922 136703814 136701949 NC_060925.1 CM039034.1 95.67 True relocation, inconsistency = 2230683 134954560 134959490 136708734 136703815 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -6343893 141295328 141298452 136711859 136708735 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 3958449 137335669 137336878 136713092 136711860 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 7625875 129705867 129709793 136717024 136713093 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = -4841924 134542263 134547287 136722502 136717528 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 2647216 131887557 131894218 136729994 136723331 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = -4861992 136744504 136749548 136735011 136729995 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 7036261 129705788 129708074 136737472 136735180 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = -11951666 141650867 141657453 136743962 136737473 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 673253 140976598 140977224 136744978 136744352 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 10592461 130379079 130384136 136750036 136744979 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 687748 129688426 129691132 136752944 136750235 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -4980259 134667520 134668677 136754109 136752952 NC_060925.1 CM039034.1 98.53 True indel: indel (<= 5bp) 134666669 134667519 136754962 136754112 NC_060925.1 CM039034.1 98.12 True indel: indel (<= 5bp) 134663970 134666665 136757658 136754963 NC_060925.1 CM039034.1 97.51 True indel: indel (<= 5bp) 134663392 134663969 136758238 136757661 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 4974548 129687142 129688222 136759940 136758860 NC_060925.1 CM039034.1 97.04 True indel: indel (<= 5bp) 129686367 129686875 136760719 136760211 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = -295371 129978735 129981527 136763726 136760930 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = -4861262 134834154 134839400 136769569 136764323 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 3963166 130865638 130869679 136774907 136770878 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -3805053 134664808 134668835 136780789 136776763 NC_060925.1 CM039034.1 98.04 True local misassembly 134665103 134666848 136782738 136780993 NC_060925.1 CM039034.1 97.14 True local misassembly 134663970 134664478 136783790 136783282 NC_060925.1 CM039034.1 97.64 True indel: indel (<= 5bp) 134663039 134663969 136784723 136783793 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = 4942324 129719006 129720714 136786432 136784724 NC_060925.1 CM039034.1 97.54 True indel: indel (<= 5bp) 129718486 129719004 136786951 136786433 NC_060925.1 CM039034.1 97.3 True local misassembly 129717010 129717747 136788356 136787619 NC_060925.1 CM039034.1 96.88 True local misassembly 129709974 129714536 136793170 136788600 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -5972164 135680597 135681617 136794713 136793691 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = -5387305 141061232 141063870 136801383 136798745 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 6388797 134664808 134670819 136809010 136802999 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -7052 134664808 134670819 136816062 136810051 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -6909155 141568478 141570652 136821546 136819373 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = -24124 141589022 141590717 136825116 136823431 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = -142323 141726946 141729438 136829515 136827023 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 11436146 130285537 130290682 136834773 136829633 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -9890393 140171952 140175529 136838759 136835174 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 9881152 130288973 130290682 136840586 136838877 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -8192706 138474571 138481678 136847690 136840587 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -1905912 140376931 140380176 136851242 136847997 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 4981874 135393736 135394789 136852563 136851510 NC_060925.1 CM039034.1 98.75 True relocation, inconsistency = 55829 135332923 135337906 136857569 136852564 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -5176552 140507319 140509474 136859725 136857570 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 536880 139965204 139970438 136864960 136859726 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = -916274 140879702 140881477 136866736 136864961 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -668130 141542527 141547512 136872064 136867056 NC_060925.1 CM039034.1 98.54 True relocation, inconsistency = 9726746 131808437 131815749 136879425 136872096 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = -9183573 140990748 140992009 136880663 136879426 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 10780557 130207721 130210190 136883113 136880664 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = -6540765 136744334 136748485 136887263 136883114 NC_060925.1 CM039034.1 98.48 True local misassembly 136747807 136748330 136887787 136887264 NC_060925.1 CM039034.1 98.7 True indel: indel (<= 5bp) 136744504 136747805 136891089 136887788 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -1250545 137989718 137994332 136896418 136891806 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 3763301 134220037 134226416 136902776 136896419 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -5248835 139467118 139468871 136904530 136902777 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = 2624458 136840013 136842448 136907177 136904742 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 6906389 129932089 129933623 136908688 136907178 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -4858217 134784849 134788484 136914117 136910510 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -5344196 140127187 140129044 136915978 136914118 NC_060925.1 CM039034.1 97.03 True local misassembly 140127187 140130507 136919530 136916256 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 1640389 138485783 138486678 136920545 136919650 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 1034129 137444242 137451653 136927963 136920546 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 7774275 129666916 129669842 136931015 136928088 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 14645 129650833 129652184 136932453 136931102 NC_060925.1 CM039034.1 97.26 True local misassembly 129653857 129655762 136934359 136932454 NC_060925.1 CM039034.1 97.01 True local misassembly 129648354 129648856 136934862 136934360 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -977993 130621804 130626241 136939389 136934968 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 3136471 127482067 127483542 136939754 136941228 NC_060925.1 CM039034.1 95.49 True relocation, inconsistency = 14490643 141974186 141979215 136946256 136941229 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 11589922 130377582 130383952 136952935 136946568 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = -10571133 140942848 140948578 136958790 136953072 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 903134 140035162 140036446 136963365 136962058 NC_060925.1 CM039034.1 95.72 True relocation, inconsistency = 10317130 129710344 129716184 136971046 136965213 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 53587 129654213 129655660 136973590 136972143 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -24671 129676166 129677482 136976285 136974992 NC_060925.1 CM039034.1 95.6 True relocation, inconsistency = -10489520 140161435 140165556 136980502 136976415 NC_060925.1 CM039034.1 95.39 True relocation, inconsistency = -347081 140503972 140508407 136985046 136980611 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -15962 140515054 140519681 136989899 136985299 NC_060925.1 CM039034.1 97.67 True fake: not a misassembly (possible transposable element) 133571724 133572822 136990998 136989900 NC_060925.1 CM039034.1 97.27 True fake: not a misassembly (possible transposable element) 140515054 140519681 136996626 136992026 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 6942231 133571709 133572822 136997740 136996627 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -6614901 140184426 140185828 136999924 136998522 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -858260 141041550 141042685 137001060 136999925 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -1084056 142123087 142124188 137003578 137002478 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 1612791 140508919 140510182 137004955 137003692 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -1592046 142099342 142100964 137006578 137004956 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 7200384 134895111 134897153 137010424 137008383 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -2239453 137129364 137133465 137015647 137011523 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 940628 136188146 136188735 137016237 137015648 NC_060925.1 CM039034.1 99.19 True relocation, inconsistency = -5793524 141975774 141978309 137022183 137019598 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 4146636 137825820 137827168 137025501 137024153 NC_060925.1 CM039034.1 98.3 True local misassembly 137825316 137825819 137026473 137025970 NC_060925.1 CM039034.1 98.41 True indel: indel (> 5bp) 137824229 137825043 137027538 137026724 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = -2677228 140499514 140501456 137029481 137027539 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = 5163364 135332057 135336149 137033565 137029482 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -6238282 141568097 141570338 137035806 137033566 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 1544979 140019590 140022744 137039333 137036180 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -1552035 141568046 141571251 137042911 137039707 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 14073112 127492123 127494933 137042912 137045703 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = 2199629 129698167 129698714 137047000 137046453 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = -12423353 142117587 142121519 137050865 137047001 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = 1204755 140910200 140912831 137053501 137050866 NC_060925.1 CM039034.1 97.02 True local misassembly 140910149 140913348 137057079 137053875 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 13415215 127492123 127494933 137057080 137059871 NC_060925.1 CM039034.1 96.46 True fake: not a misassembly (possible transposable element) 129677280 129678303 137061528 137060505 NC_060925.1 CM039034.1 97.48 True fake: not a misassembly (possible transposable element) 127495674 127497370 137061529 137063232 NC_060925.1 CM039034.1 98.0 True local misassembly 127495553 127496586 137063233 137064273 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = 2840755 130339254 130342908 137069841 137066186 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -11297326 141635304 141636579 137071117 137069842 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1990233 139638978 139644623 137077161 137071565 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -2470983 142105685 142108529 137081416 137078593 NC_060925.1 CM039034.1 96.14 True relocation, inconsistency = 4811338 137292449 137294113 137083340 137081650 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 3633140 133654689 133657986 137087954 137084663 NC_060925.1 CM039034.1 98.33 True local misassembly 133654689 133657986 137091575 137088284 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = -5540029 139193170 139194717 137093124 137091576 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 8629696 130560660 130562129 137095938 137094469 NC_060925.1 CM039034.1 97.28 True local misassembly 130557601 130560191 137099384 137096794 NC_060925.1 CM039034.1 97.41 True indel: indel (> 5bp) 130556388 130557587 137100584 137099385 NC_060925.1 CM039034.1 98.17 True local misassembly 130554395 130556167 137102675 137100903 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = 536853 130015326 130017472 137104891 137102745 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -9627419 139641373 139642424 137106263 137105212 NC_060925.1 CM039034.1 98.1 True indel: indel (> 5bp) 139640811 139641372 137106841 137106280 NC_060925.1 CM039034.1 98.22 True local misassembly 139638949 139640443 137108336 137106842 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -2391142 142027285 142030057 137111139 137108370 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 11085942 130940294 130941342 137112188 137111140 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -11113010 142050760 142053202 137114732 137112290 NC_060925.1 CM039034.1 97.58 True indel: indel (<= 5bp) 142049705 142050758 137115786 137114733 NC_060925.1 CM039034.1 96.68 True indel: indel (<= 5bp) 142047379 142049704 137118115 137115790 NC_060925.1 CM039034.1 96.99 True local misassembly 142045603 142046867 137119715 137118451 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 9925301 132117689 132120258 137122311 137119759 NC_060925.1 CM039034.1 95.57 True relocation, inconsistency = 2362359 129753063 129754091 137124578 137123550 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -1366142 131115718 131118214 137128065 137125569 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -8672265 139785468 139787982 137130580 137128066 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 10095856 129684057 129686071 137136110 137134121 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = -2793807 132475942 132477835 137138032 137136139 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 2901478 129563372 129574463 137149124 137138033 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 258404 129302746 129304967 137151342 137149125 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 2346361 126951487 126956266 137151461 137156235 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = 2672076 129628343 129628914 137156807 137156236 NC_060925.1 CM039034.1 98.24 True indel: indel (<= 5bp) 129627112 129628342 137158041 137156811 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 514064 129110464 129112844 137160626 137158245 NC_060925.1 CM039034.1 97.44 True indel: indel (> 5bp) 129106162 129110221 137164877 137160807 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = 2009606 127091160 127096555 137164878 137170273 NC_060925.1 CM039034.1 98.59 True indel: indel (> 5bp) 127096618 127100424 137170395 137174227 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -12238 127088431 127089640 137174472 137175654 NC_060925.1 CM039034.1 95.45 True indel: indel (> 5bp) 127089847 127097425 137175920 137183497 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 12123360 139221009 139222186 137184898 137183721 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 9544362 129675450 129676095 137186101 137185450 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -11658585 141331482 141332407 137188655 137187729 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 9037703 132290234 132293778 137192198 137188656 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -7300010 139589481 139590239 137192961 137192203 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 2841286 136744504 136748194 137196651 137192962 NC_060925.1 CM039034.1 98.78 True local misassembly 136744314 136748468 137200787 137196658 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -3013457 139755033 139757770 137203489 137200788 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 1759324 137989312 137994332 137209884 137204866 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 7604890 130382361 130384136 137211945 137210170 NC_060925.1 CM039034.1 98.58 True local misassembly 130377421 130384136 137218651 137211946 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -11625749 142002110 142003169 137219712 137218652 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 713026 141287249 141289083 137221547 137219713 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 4095136 137190301 137191426 137223359 137222234 NC_060925.1 CM039034.1 97.81 True fake: not a misassembly (possible transposable element) 134954604 134957295 137226041 137223360 NC_060925.1 CM039034.1 98.5 True fake: not a misassembly (possible transposable element) 137188639 137191922 137229347 137226042 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 5296799 131887824 131891839 137233366 137229348 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -4861992 136744504 136749815 137238650 137233367 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 7036261 129705757 129708074 137241142 137238819 NC_060925.1 CM039034.1 96.52 True relocation, inconsistency = -7935287 137636023 137641043 137246114 137241143 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -4500694 142130007 142136444 137252780 137246387 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = 7461533 134667520 134668473 137253734 137252781 NC_060925.1 CM039034.1 98.62 True indel: indel (<= 5bp) 134665103 134667519 137256153 137253737 NC_060925.1 CM039034.1 97.1 True local misassembly 134663970 134664478 137257205 137256697 NC_060925.1 CM039034.1 98.23 True indel: indel (<= 5bp) 134662862 134663969 137258315 137257208 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = -7056211 141715918 141718306 137261473 137259082 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 6875816 134834154 134839400 137267421 137262175 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 3963166 130865638 130869679 137272759 137268730 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -3805053 134664808 134668835 137278641 137274615 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 438429 134224430 134226175 137280590 137278845 NC_060925.1 CM039034.1 97.25 True local misassembly 134223297 134223805 137281642 137281134 NC_060925.1 CM039034.1 97.64 True indel: indel (<= 5bp) 134222189 134223296 137282752 137281645 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = -1861330 136079631 136082818 137286640 137283453 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 1408541 134664808 134670623 137292922 137287107 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 4969981 129692878 129694826 137294871 137292923 NC_060925.1 CM039034.1 97.14 True local misassembly 129691158 129692238 137296510 137295430 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -24049 129707622 129713632 137304106 137298085 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -423224 130129414 130130436 137305538 137304516 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = -10938488 141061232 141063870 137312208 137309570 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 6388797 134664808 134670819 137319835 137313824 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -5390816 140050167 140052313 137325291 137323146 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 398818 139647741 139649436 137328889 137327204 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = -981429 140625051 140627263 137333008 137330796 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 10333971 130285537 130290682 137338546 137333406 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -9890393 140171952 140175529 137342532 137338947 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 9881152 130288973 130290682 137344359 137342650 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -8192706 138474571 138481678 137351463 137344360 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -1905912 140376931 140380176 137355015 137351770 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 5149163 135226195 135227597 137356588 137355186 NC_060925.1 CM039034.1 98.93 True indel: indel (<= 5bp) 135224063 135226191 137358717 137356589 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -5288037 140507319 140510207 137363498 137360610 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 536880 139965204 139970438 137368733 137363499 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = -1088973 141052154 141053439 137370756 137369471 NC_060925.1 CM039034.1 97.36 True local misassembly 141050297 141051625 137372613 137371285 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 669657 140376931 140380171 137376322 137373082 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 8922607 131443917 131451227 137386749 137379419 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = -9548093 140990748 140992009 137387987 137386750 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 10780557 130207721 130210190 137390437 137387988 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = -6540765 136744334 136748485 137394588 137390438 NC_060925.1 CM039034.1 98.51 True local misassembly 136747807 136748330 137395112 137394589 NC_060925.1 CM039034.1 98.7 True indel: indel (<= 5bp) 136744504 136747805 137398414 137395113 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -1742912 138485781 138486541 137400049 137399289 NC_060925.1 CM039034.1 97.11 True indel: indel (<= 5bp) 138484833 138485779 137400996 137400050 NC_060925.1 CM039034.1 98.52 True indel: indel (<= 5bp) 138483423 138484832 137402407 137400998 NC_060925.1 CM039034.1 98.72 True local misassembly 138481680 138482980 137403708 137402408 NC_060925.1 CM039034.1 99.0 True relocation, inconsistency = 4255228 134220037 134226416 137410101 137403744 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -5248835 139467118 139468871 137411855 137410102 NC_060925.1 CM039034.1 98.54 True relocation, inconsistency = 2641676 136822795 136825230 137414502 137412067 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = 2030978 134784849 134788484 137421442 137417835 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -5344196 140127187 140129044 137423303 137421443 NC_060925.1 CM039034.1 97.03 True local misassembly 140127187 140130507 137426855 137423581 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 1640389 138485781 138486678 137427872 137426975 NC_060925.1 CM039034.1 96.66 True indel: indel (<= 5bp) 138484833 138485779 137428819 137427873 NC_060925.1 CM039034.1 98.73 True indel: indel (<= 5bp) 138483423 138484832 137430230 137428821 NC_060925.1 CM039034.1 98.58 True local misassembly 138482016 138482980 137431195 137430231 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 1517672 136957573 136964343 137438111 137431196 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = 6556647 130394844 130400925 137444193 137438112 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 724877 129666916 129669842 137447245 137444318 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 14645 129650764 129652184 137448752 137447332 NC_060925.1 CM039034.1 97.26 True local misassembly 129648354 129649431 137451092 137450015 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -977993 130621804 130626241 137455619 137451198 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 3136471 127482067 127483443 137455984 137457359 NC_060925.1 CM039034.1 95.46 True relocation, inconsistency = 14488899 141972343 141975762 137460777 137457360 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 11570830 130393096 130401426 137469165 137460864 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = -10555619 140942848 140948578 137475020 137469302 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 874450 140063844 140065251 137479597 137478167 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 10345812 129710344 129716184 137487278 137481445 NC_060925.1 CM039034.1 96.52 True relocation, inconsistency = 46089 129661611 129663158 137489922 137488375 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -10504452 140161454 140164593 137494511 137491392 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = -1549672 141708935 141711125 137496666 137494512 NC_060925.1 CM039034.1 95.31 True relocation, inconsistency = 94151 141608108 141614729 137503489 137496721 NC_060925.1 CM039034.1 95.01 True relocation, inconsistency = 1261362 140346059 140346698 137504175 137503537 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -162649 140503972 140508707 137508911 137504176 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = -15962 140515054 140519681 137513764 137509164 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 6942231 133571709 133572822 137514878 137513765 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -4254658 137824161 137826272 137517062 137514973 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -2769721 140590227 140591328 137520716 137519616 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -1387427 141975696 141977540 137522674 137520830 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 4192211 137780736 137782515 137525456 137523644 NC_060925.1 CM039034.1 95.37 True relocation, inconsistency = -4320046 142099342 142100781 137526896 137525457 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 12145313 129949268 129952315 137531682 137528610 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -10571012 140515054 140519681 137536881 137532281 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 6942231 133571709 133572822 137537995 137536882 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -3899349 137468852 137470963 137540179 137538090 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -4657890 142123103 142124188 137543817 137542733 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 838635 141282169 141284467 137546116 137543818 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 3499009 137780736 137782515 137548573 137546761 NC_060925.1 CM039034.1 95.37 True relocation, inconsistency = -2258043 140037235 140038778 137550117 137548574 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 6745774 133289173 133289747 137552405 137551831 NC_060925.1 CM039034.1 97.57 True indel: indel (<= 5bp) 133287718 133289171 137553859 137552406 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -3846846 137129364 137133465 137559082 137554958 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 940628 136188146 136188735 137559672 137559083 NC_060925.1 CM039034.1 99.19 True relocation, inconsistency = -5789972 141972343 141974757 137565497 137563033 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 4143084 137825820 137827168 137568936 137567588 NC_060925.1 CM039034.1 98.37 True local misassembly 137825316 137825819 137569908 137569405 NC_060925.1 CM039034.1 98.41 True indel: indel (> 5bp) 137824229 137825043 137570973 137570159 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = -2677228 140498193 140501456 137574253 137570974 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 10802401 129694977 129695791 137575068 137574254 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -11877317 141569900 141571825 137577462 137575537 NC_060925.1 CM039034.1 97.3 True fake: not a misassembly (possible transposable element) 140019590 140022744 137581016 137577863 NC_060925.1 CM039034.1 97.37 True fake: not a misassembly (possible transposable element) 141568046 141571251 137584594 137581390 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 14073112 127492123 127494933 137584595 137587386 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = 2199629 129698167 129698714 137588683 137588136 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = -12423353 142117671 142121519 137592464 137588684 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = 2322756 139789874 139794914 137597504 137592465 NC_060925.1 CM039034.1 95.99 True relocation, inconsistency = 12294940 127494413 127494933 137597505 137598026 NC_060925.1 CM039034.1 97.25 True relocation, inconsistency = 2199629 129698167 129698714 137599323 137598776 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = -12423353 142117587 142121519 137603188 137599324 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = 546852 141568097 141570734 137605824 137603189 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 654375 140910149 140913348 137609402 137606198 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 13415093 127492268 127494933 137609525 137612194 NC_060925.1 CM039034.1 97.15 True local misassembly 127495674 127497370 137613852 137615555 NC_060925.1 CM039034.1 98.0 True local misassembly 127495553 127496586 137615556 137616596 NC_060925.1 CM039034.1 95.8 True relocation, inconsistency = 2840755 130339254 130342908 137622164 137618509 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -11297326 141635304 141636579 137623440 137622165 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 1990233 139636526 139644623 137631910 137623888 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -2473223 142105685 142108529 137635953 137633130 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = 11161899 130941708 130943531 137638057 137636208 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -2717421 133654689 133657986 137642491 137639200 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = -5540029 139193170 139194717 137644040 137642492 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 8629696 130560660 130562129 137646854 137645385 NC_060925.1 CM039034.1 97.28 True local misassembly 130557601 130560191 137650300 137647710 NC_060925.1 CM039034.1 97.38 True indel: indel (> 5bp) 130556388 130557587 137651500 137650301 NC_060925.1 CM039034.1 98.17 True local misassembly 130554394 130556167 137653592 137651819 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = -10128126 140678933 140681946 137657179 137654166 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -924043 141600280 141602415 137659877 137657740 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 7084507 134512523 134515704 137663104 137659946 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -6061969 140564963 140574390 137672433 137663206 NC_060925.1 CM039034.1 95.07 True relocation, inconsistency = 7467348 133096801 133097614 137673227 137672434 NC_060925.1 CM039034.1 95.65 True relocation, inconsistency = 3341471 129753063 129754091 137675494 137674466 NC_060925.1 CM039034.1 98.64 True relocation, inconsistency = -1366142 131115718 131118214 137678981 137676485 NC_060925.1 CM039034.1 98.08 True local misassembly 131114527 131115528 137679983 137678982 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 1423402 129684057 129686071 137687026 137685037 NC_060925.1 CM039034.1 96.23 True relocation, inconsistency = -5153326 134834247 134837343 137690162 137687066 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -2039489 136870117 136871499 137693781 137692399 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -763005 137623698 137626722 137703205 137700181 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 8048249 129563372 129574463 137715282 137704191 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 201885 129359191 129361486 137717545 137715283 NC_060925.1 CM039034.1 96.52 True relocation, inconsistency = 2357909 126996482 127001221 137717606 137722340 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = 322821 127324473 127334913 137722771 137733238 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = -235844 127099070 127100454 137733239 137734646 NC_060925.1 CM039034.1 95.53 True relocation, inconsistency = -9506 127091160 127096555 137734858 137740253 NC_060925.1 CM039034.1 98.54 True indel: indel (> 5bp) 127096618 127100424 137740375 137744207 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -53765 127046904 127050977 137744452 137748498 NC_060925.1 CM039034.1 97.4 True indel: indel (> 5bp) 127051167 127054987 137748629 137752423 NC_060925.1 CM039034.1 97.41 True indel: indel (> 5bp) 127055482 127065744 137752858 137763149 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = -108075 126957670 126959553 137763150 137765032 NC_060925.1 CM039034.1 97.02 True local misassembly 126963690 126971404 137765033 137772747 NC_060925.1 CM039034.1 97.6 True indel: indel (> 5bp) 126971894 126984815 137773177 137785927 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 70050 127054866 127059423 137785928 137790481 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -90323 126969101 126976904 137790482 137798310 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 119535 127096618 127105651 137798489 137807571 NC_060925.1 CM039034.1 95.19 True relocation, inconsistency = 118777 127224429 127235651 137807572 137818820 NC_060925.1 CM039034.1 98.59 True relocation, inconsistency = -261302 126974538 126979828 137819009 137824525 NC_060925.1 CM039034.1 95.59 True relocation, inconsistency = 236765 127216594 127234323 137824526 137842312 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -276417 126957907 126960890 137842313 137845291 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 251652 127212543 127230180 137845292 137862987 NC_060925.1 CM039034.1 97.32 True local misassembly 127227688 127234459 137863197 137869990 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = -129039 127105424 127113187 137869994 137877745 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 102043 127215231 127237838 137877746 137900487 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = -22044 127215795 127237274 137900488 137922017 NC_060925.1 CM039034.1 99.13 True relocation, inconsistency = -22044 127215231 127237838 137922018 137944677 NC_060925.1 CM039034.1 99.25 True local misassembly 127233696 127237274 137944678 137948245 NC_060925.1 CM039034.1 99.17 True relocation, inconsistency = -22044 127215231 127237838 137948246 137970865 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = 14924719 142162558 142164391 137972699 137970866 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 1653458 140505065 140508440 137976709 137973359 NC_060925.1 CM039034.1 97.87 True local misassembly 140508619 140510392 137978483 137976710 NC_060925.1 CM039034.1 98.39 True indel: stretch of mismatches 140506665 140508440 137980437 137978662 NC_060925.1 CM039034.1 97.95 True local misassembly 140503290 140508440 137985564 137980438 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -1487161 141988052 141990450 137987962 137985565 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -152436 142135365 142140487 137993134 137987963 NC_060925.1 CM039034.1 96.73 True relocation, inconsistency = 3020530 139112116 139113823 137995879 137994146 NC_060925.1 CM039034.1 96.14 True relocation, inconsistency = 4732213 134378830 134379902 137996952 137995880 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 4705229 129672266 129673297 137998287 137997256 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -12494046 142163945 142164855 138000654 137999744 NC_060925.1 CM039034.1 97.91 True indel: indel (<= 5bp) 142162558 142163944 138002042 138000656 NC_060925.1 CM039034.1 98.13 True local misassembly 142161577 142162338 138002804 138002043 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 8875318 133280541 133286160 138008520 138002903 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 3125674 130153170 130154866 138010240 138008521 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -7319875 137468852 137470963 138014411 138012322 NC_060925.1 CM039034.1 97.63 True local misassembly 137468852 137471787 138017495 138014582 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -3044352 140510593 140512226 138020106 138018473 NC_060925.1 CM039034.1 97.92 True local misassembly 140508486 140510124 138021745 138020107 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 2352428 138153161 138154883 138024675 138022920 NC_060925.1 CM039034.1 95.33 True relocation, inconsistency = 8433287 129718329 129719873 138026219 138024676 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -3573197 133287620 133290165 138030049 138027580 NC_060925.1 CM039034.1 95.05 True relocation, inconsistency = -3846846 137129364 137133465 138035164 138031050 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = -4939318 142065245 142068370 138038574 138035476 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 4591962 137470511 137471859 138041346 138039998 NC_060925.1 CM039034.1 98.37 True local misassembly 137470007 137470510 138042318 138041815 NC_060925.1 CM039034.1 98.41 True indel: indel (> 5bp) 137468920 137469734 138043383 138042569 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -4655269 142120855 142124188 138046690 138043384 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 10000780 132114397 132119567 138052361 138047198 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = -1742417 133856045 133856813 138053130 138052362 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -8265464 142117587 142121508 138056985 138053131 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 546852 141568097 141570734 138059621 138056986 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 1544979 140019594 140022744 138063144 138059995 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 12524660 127492068 127494933 138063145 138065991 NC_060925.1 CM039034.1 96.39 True local misassembly 127495674 127497370 138067649 138069352 NC_060925.1 CM039034.1 98.0 True local misassembly 127495553 127496586 138069353 138070393 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 10992873 138489648 138490805 138071765 138070582 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = -671237 139158953 139160565 138073697 138072085 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 9451246 129705832 129707552 138075575 138073852 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = -10378772 140081718 140084452 138078432 138075727 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = -1973599 142053502 142055316 138080218 138078433 NC_060925.1 CM039034.1 95.65 True relocation, inconsistency = 12360806 129691897 129692695 138081017 138080219 NC_060925.1 CM039034.1 98.25 True indel: indel (> 5bp) 129691158 129691873 138081733 138081018 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -12360754 142047300 142050493 138086321 138083152 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = 11103860 130941708 130943439 138088079 138086322 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = -2717421 133654689 133657986 138092513 138089222 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -5540029 139193170 139194717 138094062 138092514 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = 8629696 130560660 130562129 138096876 138095407 NC_060925.1 CM039034.1 97.28 True local misassembly 130557601 130559711 138100315 138098205 NC_060925.1 CM039034.1 97.39 True indel: indel (> 5bp) 130556360 130557587 138101543 138100316 NC_060925.1 CM039034.1 98.13 True local misassembly 130554557 130556167 138103444 138101834 NC_060925.1 CM039034.1 96.05 True relocation, inconsistency = -10421537 140972891 140976093 138106648 138103445 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -737849 141709024 141710261 138108364 138107127 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 8142645 133563815 133565725 138110928 138109018 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -6079003 139641373 139642424 138112373 138111322 NC_060925.1 CM039034.1 98.19 True indel: indel (> 5bp) 139640811 139641372 138112951 138112390 NC_060925.1 CM039034.1 98.22 True local misassembly 139638949 139640443 138114446 138112952 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = -2391142 142027285 142030057 138117249 138114480 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 12249658 129776578 129777626 138118298 138117250 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 64443 129706074 129712072 138124362 138118361 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = -12399207 142103714 142105280 138125929 138124363 NC_060925.1 CM039034.1 96.85 True local misassembly 142101867 142103131 138127601 138126337 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 2478834 139619573 139622798 138131110 138127836 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = 7141257 132476962 132477848 138132464 138131578 NC_060925.1 CM039034.1 98.08 True local misassembly 132474988 132476539 138134016 138132465 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -3112086 135585025 135587073 138136065 138134017 NC_060925.1 CM039034.1 98.54 True relocation, inconsistency = -6355849 141938612 141940341 138138327 138136598 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = 12249387 129684057 129686071 138143470 138141481 NC_060925.1 CM039034.1 96.08 True relocation, inconsistency = -5153326 134834900 134837343 138145953 138143510 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 2572574 132258513 132262325 138149766 138145954 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -5733935 137976987 137980011 138165227 138162203 NC_060925.1 CM039034.1 98.78 True relocation, inconsistency = 8364623 129604613 129611389 138173023 138166202 NC_060925.1 CM039034.1 96.25 True relocation, inconsistency = 90246 129512763 129514366 138174627 138173024 NC_060925.1 CM039034.1 97.71 True indel: indel (<= 5bp) 129512239 129512762 138175152 138174629 NC_060925.1 CM039034.1 98.28 True indel: indel (> 5bp) 129509510 129511989 138177903 138175424 NC_060925.1 CM039034.1 97.82 True indel: indel (> 5bp) 129507306 129509256 138180129 138178179 NC_060925.1 CM039034.1 97.13 True indel: indel (<= 5bp) 129506719 129507286 138180714 138180147 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = 2410117 127090147 127092575 138182401 138184803 NC_060925.1 CM039034.1 96.91 True local misassembly 127093957 127101672 138184804 138192463 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -157654 126944490 126947045 138192935 138195493 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 59946 127007061 127012151 138195563 138200619 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = -14968 126997585 127009643 138201021 138213074 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 84071 127093715 127096805 138213075 138216164 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -41324 127055482 127063532 138216165 138224218 NC_060925.1 CM039034.1 99.03 True relocation, inconsistency = 39866 127103629 127104931 138224449 138225751 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = -49570 127055362 127063101 138225752 138233465 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 41461 127104932 127106888 138233835 138235791 NC_060925.1 CM039034.1 95.34 True relocation, inconsistency = 107571 127214460 127236424 138235792 138257541 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -122719 127113706 127117135 138257542 138260983 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -141633 126976262 126977359 138261743 138262840 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 125111 127102471 127111615 138262841 138272016 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -137215 126974538 126979828 138272154 138277670 NC_060925.1 CM039034.1 95.59 True relocation, inconsistency = 236765 127216594 127226200 138277671 138287351 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -10996 127215205 127235651 138287352 138307893 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -277798 126957854 126960853 138307894 138310888 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 135861 127096715 127099548 138310889 138313672 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 115816 127215365 127231561 138313673 138330017 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -135006 127096556 127097363 138330018 138330824 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -44112 127053252 127060241 138330825 138337975 NC_060925.1 CM039034.1 96.33 True relocation, inconsistency = 154549 127214791 127237838 138337976 138360992 NC_060925.1 CM039034.1 98.52 True local misassembly 127233696 127237274 138360993 138364564 NC_060925.1 CM039034.1 99.07 True relocation, inconsistency = -22044 127215231 127237838 138364565 138387311 NC_060925.1 CM039034.1 98.67 True local misassembly 127232315 127237274 138387312 138392264 NC_060925.1 CM039034.1 99.07 True relocation, inconsistency = -22044 127215231 127235893 138392265 138412977 NC_060925.1 CM039034.1 99.18 True relocation, inconsistency = -20663 127215231 127237838 138412978 138435637 NC_060925.1 CM039034.1 99.18 True local misassembly 127232315 127237274 138435638 138440597 NC_060925.1 CM039034.1 99.22 True relocation, inconsistency = -22044 127215231 127237838 138440598 138463246 NC_060925.1 CM039034.1 99.06 True local misassembly 127230934 127237274 138463247 138469567 NC_060925.1 CM039034.1 98.98 True relocation, inconsistency = -22044 127215231 127237950 138469568 138492320 NC_060925.1 CM039034.1 99.02 True local misassembly 127232402 127234576 138492321 138494495 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = -208371 127026206 127031531 138494496 138499671 NC_060925.1 CM039034.1 95.49 True relocation, inconsistency = 184986 127216518 127236852 138499672 138519804 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -17108 127220703 127227649 138520763 138527731 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -128752 127098898 127102002 138527732 138530813 NC_060925.1 CM039034.1 97.4 True indel: indel (> 5bp) 127102180 127107311 138530955 138536059 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 1998154 129105466 129114611 138545054 138536060 NC_060925.1 CM039034.1 95.48 True relocation, inconsistency = -5479548 134583221 134584792 138546837 138545276 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -1174045 135755485 135756056 138548618 138548047 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 8639295 127111715 127114536 138549208 138552028 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -16470 127098067 127102013 138552029 138555922 NC_060925.1 CM039034.1 96.68 True indel: indel (> 5bp) 127102260 127109501 138556133 138563370 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = 3446715 130556380 130558045 138565180 138563534 NC_060925.1 CM039034.1 95.75 True relocation, inconsistency = -11486191 142039898 142041478 138567853 138566273 NC_060925.1 CM039034.1 95.83 True indel: indel (<= 5bp) 142038897 142039897 138568857 138567857 NC_060925.1 CM039034.1 95.3 True relocation, inconsistency = 12014256 130020707 130024516 138572768 138568982 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 299187 129716301 129720991 138577951 138573297 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -11259625 140972325 140975925 138581527 138577952 NC_060925.1 CM039034.1 96.29 True relocation, inconsistency = 10397965 130573527 130574359 138582361 138581528 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = -6897979 137470376 137470957 138583491 138582910 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -4000086 141467707 141469695 138586246 138584258 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 14020469 127443629 127446937 138586547 138589848 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 14178133 141625071 141626170 138590922 138589849 NC_060925.1 CM039034.1 96.06 True relocation, inconsistency = -500771 142121572 142124115 138595168 138592649 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 11289059 130831073 130832512 138596608 138595169 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = -9675522 140503287 140506543 138599916 138596660 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 5061057 135439715 135442229 138602431 138599917 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 5734068 129704780 129705559 138603298 138602519 NC_060925.1 CM039034.1 98.21 True indel: indel (> 5bp) 129703656 129704779 138604445 138603322 NC_060925.1 CM039034.1 97.06 True local misassembly 129702499 129703655 138605720 138604564 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -12024661 141725177 141727135 138607703 138605745 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -402552 142122343 142127728 138613112 138607704 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 6543151 135576011 135579191 138616293 138613113 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 3377334 132195601 132196330 138619369 138618640 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -7478798 139673227 139674397 138620508 138619371 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 9963507 129708947 129709719 138621281 138620509 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = -10071893 139777086 139780839 138625032 138621282 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = 9793897 129981804 129983188 138626417 138625033 NC_060925.1 CM039034.1 97.0 True indel: indel (> 5bp) 129980863 129981649 138627308 138626522 NC_060925.1 CM039034.1 95.93 True indel: indel (<= 5bp) 129980139 129980859 138628029 138627309 NC_060925.1 CM039034.1 96.39 True local misassembly 129978855 129979888 138629063 138628030 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -5495658 135471576 135472214 138632000 138631362 NC_060925.1 CM039034.1 97.81 True indel: indel (> 5bp) 135470750 135471421 138632839 138632168 NC_060925.1 CM039034.1 98.66 True indel: indel (<= 5bp) 135468667 135470746 138634919 138632840 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 8026925 127437675 127441048 138635613 138638985 NC_060925.1 CM039034.1 96.95 True local misassembly 127437675 127441048 138639871 138643243 NC_060925.1 CM039034.1 96.98 True local misassembly 127437675 127441048 138644129 138647498 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 13535626 140977323 140978310 138648947 138647960 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 11297182 129676500 129680140 138652561 138648948 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -341430 130009043 130017279 138661434 138653212 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 329342 129676500 129679700 138664635 138661435 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -9967073 139641259 139642871 138666949 138665337 NC_060925.1 CM039034.1 97.4 True local misassembly 139638833 139640371 138669373 138667835 NC_060925.1 CM039034.1 97.01 True local misassembly 139636726 139638001 138671015 138669740 NC_060925.1 CM039034.1 97.18 True indel: indel (> 5bp) 139635395 139636399 138672297 138671293 NC_060925.1 CM039034.1 96.52 True indel: indel (> 5bp) 139634431 139635194 138673241 138672478 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -148369 139781624 139782533 138674415 138673508 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 173248 139603996 139608012 138678766 138674779 NC_060925.1 CM039034.1 95.72 True relocation, inconsistency = -1993197 141596014 141596915 138679939 138679044 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = -21539 141614069 141615363 138683425 138682129 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 547398 141061680 141065239 138688417 138684857 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 11346715 129707925 129714536 138695465 138688846 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = -10085000 139791964 139792487 138696426 138695903 NC_060925.1 CM039034.1 97.14 True indel: indel (> 5bp) 139791242 139791889 138697074 138696427 NC_060925.1 CM039034.1 96.14 True relocation, inconsistency = 9805623 129981363 129985274 138701331 138697419 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -9603988 139583648 139585045 138703056 138701637 NC_060925.1 CM039034.1 96.27 True relocation, inconsistency = 4913345 134661428 134669746 138711884 138703613 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 4984273 129675783 129676563 138713266 138712476 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = -36186 129706074 129711968 138719135 138713267 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = -9914211 139618361 139620284 138721059 138719136 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -1341689 140959538 140960049 138721571 138721060 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = -1057800 142016416 142017337 138722493 138721572 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 12303690 129706074 129712291 138729119 138722928 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = -9914211 139618701 139620284 138730700 138729120 NC_060925.1 CM039034.1 97.78 True local misassembly 139618225 139622229 138734695 138730701 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -2529503 142146372 142147727 138736018 138734696 NC_060925.1 CM039034.1 96.57 True local misassembly 142148193 142149490 138737749 138736452 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 2497227 139646636 139650965 138742025 138737750 NC_060925.1 CM039034.1 95.92 True relocation, inconsistency = 6477163 133167541 133169472 138743959 138742026 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -6899391 140066347 140066867 138744544 138744024 NC_060925.1 CM039034.1 97.31 True indel: indel (> 5bp) 140065622 140066272 138745195 138744545 NC_060925.1 CM039034.1 96.01 True relocation, inconsistency = 10353514 129709725 129711823 138747582 138745480 NC_060925.1 CM039034.1 97.0 True local misassembly 129707925 129714204 138753871 138747583 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -9952261 139658810 139660185 138755224 138753872 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -11059 139663514 139669776 138761533 138755317 NC_060925.1 CM039034.1 96.02 True relocation, inconsistency = 9984752 129675882 129678297 138764413 138761998 NC_060925.1 CM039034.1 97.81 True fake: not a misassembly (possible transposable element) 139673142 139674425 138765817 138764544 NC_060925.1 CM039034.1 97.43 True fake: not a misassembly (possible transposable element) 129675882 129678297 138768351 138765937 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -40752 129708251 129715869 138776755 138769116 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -10392556 140098993 140100642 138778569 138776920 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 457252 139636374 139641126 138783917 138779184 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = -450138 140082073 140086285 138788325 138784144 NC_060925.1 CM039034.1 95.92 True relocation, inconsistency = 10405883 129675359 129675961 138789156 138788554 NC_060925.1 CM039034.1 98.22 True local misassembly 129676367 129681514 138794305 138789157 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -8446102 138115829 138121366 138801001 138795408 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 7150746 130963150 130965003 138802934 138801081 NC_060925.1 CM039034.1 98.6 True fake: not a misassembly (possible transposable element) 141634624 141636692 138805830 138803758 NC_060925.1 CM039034.1 97.59 True fake: not a misassembly (possible transposable element) 130963150 130965038 138809666 138807778 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -10011563 140971821 140973889 138812562 138810490 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 2852781 138115541 138116656 138816061 138814946 NC_060925.1 CM039034.1 99.01 True local misassembly 138114883 138115540 138817187 138816530 NC_060925.1 CM039034.1 97.87 True indel: indel (<= 5bp) 138114055 138114882 138818017 138817190 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -819821 138932714 138933831 138819179 138818062 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 11485281 127444408 127446878 138819734 138822204 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 5318888 132766512 132769929 138826367 138822950 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -5059909 137824161 137826272 138828605 138826516 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -4157311 141979592 141981447 138830485 138828630 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 3157463 138819983 138822128 138832631 138830486 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 1090871 137726573 137727972 138835170 138833771 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 7258705 130464779 130467788 138838282 138835250 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -9173241 139636504 139638019 138839798 138838283 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -2113155 141746792 141748875 138842666 138840582 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = 12094698 129650414 129651854 138844346 138842906 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -10451418 140096528 140100791 138849651 138845387 NC_060925.1 CM039034.1 96.33 True relocation, inconsistency = 10380407 129709569 129716082 138856214 138849690 NC_060925.1 CM039034.1 96.83 True local misassembly 129707925 129716279 138864590 138856215 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -3435158 133141649 133142618 138866024 138865055 NC_060925.1 CM039034.1 98.56 True local misassembly 133140060 133140740 138867171 138866491 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 3425366 129707925 129712640 138873949 138869225 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -10085000 139791964 139792487 138874910 138874387 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 10114936 129675882 129676962 138876056 138874976 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -955439 130628148 130630109 138879230 138877268 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -9204110 139828203 139831940 138883284 138879548 NC_060925.1 CM039034.1 95.6 True relocation, inconsistency = -2254312 142080473 142082302 138885326 138883497 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 14655198 127424006 127425240 138885361 138886595 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = 2287165 129712467 129713750 138887940 138886657 NC_060925.1 CM039034.1 98.29 True local misassembly 129710224 129712002 138889719 138887941 NC_060925.1 CM039034.1 97.36 True local misassembly 129710224 129712300 138892431 138890355 NC_060925.1 CM039034.1 96.87 True indel: indel (<= 5bp) 129707925 129710060 138894734 138892599 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -8274398 137981371 137981928 138895686 138895129 NC_060925.1 CM039034.1 97.49 True indel: indel (> 5bp) 137980406 137981295 138896576 138895687 NC_060925.1 CM039034.1 96.52 True relocation, inconsistency = -2517313 140492679 140497038 138901614 138897257 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 13038964 127451778 127453531 138901798 138903551 NC_060925.1 CM039034.1 96.29 True indel: indel (> 5bp) 127454017 127454636 138904020 138904639 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 8038800 135493593 135496955 138908134 138904796 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 2315533 133176077 133177750 138910116 138908444 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -7770285 140939905 140946361 138916530 138910117 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -1152807 142092142 142092711 138917100 138916531 NC_060925.1 CM039034.1 96.26 True indel: indel (<= 5bp) 142091428 142092141 138917817 138917104 NC_060925.1 CM039034.1 95.52 True indel: indel (<= 5bp) 142089615 142091424 138919627 138917818 NC_060925.1 CM039034.1 97.24 True local misassembly 142088593 142089614 138920776 138919755 NC_060925.1 CM039034.1 96.58 True indel: indel (<= 5bp) 142087496 142088592 138921876 138920780 NC_060925.1 CM039034.1 96.35 True relocation, inconsistency = 12375789 129708124 129711421 138925453 138922162 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = -10808801 140515913 140516924 138926465 138925454 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 1638877 138876425 138877035 138927076 138926466 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 9164718 129708124 129711421 138930653 138927362 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = 2250027 127455841 127457779 138930971 138932909 NC_060925.1 CM039034.1 97.22 True indel: indel (> 5bp) 127457780 127458420 138932926 138933566 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 12630246 140089001 140093080 138937994 138933901 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 10374761 129712464 129714239 138939770 138937995 NC_060925.1 CM039034.1 97.87 True local misassembly 129707925 129716375 138948805 138940334 NC_060925.1 CM039034.1 96.92 True local misassembly 129709569 129714645 138953893 138948806 NC_060925.1 CM039034.1 97.04 True local misassembly 129706150 129716279 138964048 138953894 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = -10260 129706075 129716279 138974408 138964179 NC_060925.1 CM039034.1 97.06 True local misassembly 129708030 129710088 138976470 138974409 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = -12400980 142105029 142109009 138980457 138976471 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 12388479 129714871 129716459 138982136 138980548 NC_060925.1 CM039034.1 97.42 True local misassembly 129712464 129714412 138984085 138982137 NC_060925.1 CM039034.1 97.43 True local misassembly 129709569 129714530 138989232 138984263 NC_060925.1 CM039034.1 97.01 True local misassembly 129707925 129716279 138997608 138989233 NC_060925.1 CM039034.1 96.92 True local misassembly 129707925 129709499 138999849 138998275 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -8429522 138136495 138137058 139000801 139000238 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = 8459458 129674916 129676918 139002956 139000920 NC_060925.1 CM039034.1 95.66 True relocation, inconsistency = -10455283 140124734 140130198 139008364 139002957 NC_060925.1 CM039034.1 96.13 True relocation, inconsistency = 10408363 129707925 129716370 139016831 139008365 NC_060925.1 CM039034.1 96.95 True local misassembly 129707925 129712405 139021319 139016832 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -10339046 140044357 140045929 139023933 139022361 NC_060925.1 CM039034.1 96.5 True indel: indel (> 5bp) 140043815 140044356 139024524 139023983 NC_060925.1 CM039034.1 98.52 True indel: indel (> 5bp) 140043084 140043739 139025180 139024525 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = 3013791 137021246 137028587 139033186 139025886 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = -3658792 140678665 140680037 139034526 139033187 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -1471259 142148204 142149490 139036246 139034960 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 2525974 139618225 139622229 139040241 139036247 NC_060925.1 CM039034.1 97.8 True local misassembly 139618506 139621753 139043479 139040242 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 2589918 137021246 137028587 139050778 139043480 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = -3658792 140678665 140680037 139052118 139050779 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = -1471259 142148204 142149490 139053838 139052552 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 2525974 139618225 139622229 139057833 139053839 NC_060925.1 CM039034.1 97.8 True local misassembly 139618701 139621753 139060876 139057834 NC_060925.1 CM039034.1 97.87 True local misassembly 139618225 139622229 139064868 139060877 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -1061796 140678665 140680020 139066191 139064869 NC_060925.1 CM039034.1 96.31 True local misassembly 140678739 140681783 139069636 139066625 NC_060925.1 CM039034.1 96.35 True local misassembly 140678665 140681783 139073229 139070144 NC_060925.1 CM039034.1 96.44 True local misassembly 140678665 140681783 139076748 139073663 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -1471259 142146372 142149490 139080267 139077182 NC_060925.1 CM039034.1 96.34 True local misassembly 142146612 142149490 139083546 139080701 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 14910960 127224064 127235651 139083547 139095094 NC_060925.1 CM039034.1 99.05 True relocation, inconsistency = -15132 127220703 127227649 139095278 139102246 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = -128752 127098898 127102002 139102247 139105328 NC_060925.1 CM039034.1 97.31 True indel: indel (> 5bp) 127102180 127109312 139105470 139112598 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = -25975 127083338 127092077 139112599 139121160 NC_060925.1 CM039034.1 96.08 True fake: not a misassembly (possible transposable element) 127103027 127108852 139121161 139127022 NC_060925.1 CM039034.1 96.67 True fake: not a misassembly (possible transposable element) 127099285 127102002 139127023 139129713 NC_060925.1 CM039034.1 96.6 True indel: indel (> 5bp) 127102180 127103877 139129855 139131525 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -20540 127083338 127091364 139131526 139139551 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 2614307 129705820 129709322 139143196 139139700 NC_060925.1 CM039034.1 96.18 True local misassembly 129704207 129705784 139145505 139143928 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -11259344 140959161 140963349 139149866 139145707 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = 761002 140195212 140197886 139152814 139150139 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 1713220 138479222 138481611 139155575 139153195 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = 8070878 130405527 130408309 139158393 139155610 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 452066 129952082 129953319 139159772 139158535 NC_060925.1 CM039034.1 97.9 True local misassembly 129949606 129951613 139161780 139159773 NC_060925.1 CM039034.1 98.11 True indel: indel (> 5bp) 129949066 129949605 139162346 139161807 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -11521462 141467707 141469695 139165167 139163179 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 181481 141282169 141286168 139169178 139165225 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -694606 141974388 141976353 139171565 139169600 NC_060925.1 CM039034.1 98.17 True local misassembly 141975696 141979215 139175117 139171598 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 11142412 130831073 130833185 139177328 139175216 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -9675522 140503287 140506543 139180636 139177380 NC_060925.1 CM039034.1 98.37 True local misassembly 140501920 140502703 139181785 139181002 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 3949846 136548571 136552073 139185288 139181786 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = 6178195 130366630 130370375 139189028 139185289 NC_060925.1 CM039034.1 95.2 True relocation, inconsistency = -11765154 142128701 142131783 139192113 139189029 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 2466615 139660039 139661375 139194127 139192824 NC_060925.1 CM039034.1 95.44 True relocation, inconsistency = 7511917 132145854 132147893 139196422 139194356 NC_060925.1 CM039034.1 96.57 True relocation, inconsistency = -7558616 139703770 139704440 139197122 139196452 NC_060925.1 CM039034.1 98.21 True indel: indel (> 5bp) 139703240 139703746 139197629 139197123 NC_060925.1 CM039034.1 98.03 True indel: indel (> 5bp) 139702300 139702999 139198520 139197821 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = -2406715 142107741 142108304 139199794 139199231 NC_060925.1 CM039034.1 96.99 True indel: indel (<= 5bp) 142106929 142107740 139200609 139199798 NC_060925.1 CM039034.1 96.67 True local misassembly 142106270 142106928 139201509 139200851 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 14663954 127437675 127442315 139201510 139206136 NC_060925.1 CM039034.1 96.6 True local misassembly 127437675 127441048 139207531 139210900 NC_060925.1 CM039034.1 96.86 True relocation, inconsistency = 14197935 141639445 141640619 139212536 139211362 NC_060925.1 CM039034.1 97.36 True local misassembly 141638199 141638976 139213314 139212537 NC_060925.1 CM039034.1 95.24 True indel: indel (<= 5bp) 141637201 141638197 139214311 139213315 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 350975 141282169 141286168 139218322 139214369 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 769200 140510910 140512547 139220381 139218744 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = -1615314 142123181 142126223 139223424 139220382 NC_060925.1 CM039034.1 97.86 True indel: indel (<= 5bp) 142122245 142123179 139224359 139223425 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = 11289059 130831073 130833185 139226472 139224360 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = -9675522 140503287 140506543 139229780 139226524 NC_060925.1 CM039034.1 98.28 True local misassembly 140501802 140502703 139231047 139230146 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 2773680 137726573 137727972 139232596 139231197 NC_060925.1 CM039034.1 98.0 True local misassembly 137725834 137726425 139233188 139232597 NC_060925.1 CM039034.1 96.79 True indel: indel (> 5bp) 137724736 137725731 139234310 139233315 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 8020936 129702499 129703642 139235611 139234468 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -4564125 134263081 134266554 139239155 139235681 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -7867253 142128552 142130333 139240938 139239156 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 163740 141962604 141963362 139243146 139242388 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 999616 140957355 140962604 139248760 139243530 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = -1020464 141975895 141977818 139250671 139248761 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 11988715 129980998 129985196 139256851 139252655 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = -374131 130354467 130355076 139257513 139256904 NC_060925.1 CM039034.1 97.87 True indel: indel (> 5bp) 130353923 130354466 139258080 139257537 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 673782 129676500 129680140 139261694 139258081 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -10489541 140160951 140165492 139266788 139262243 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 10468506 129684412 129692337 139274798 139266896 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -10109912 139792205 139794184 139276917 139274938 NC_060925.1 CM039034.1 97.42 True local misassembly 139791242 139791966 139277709 139276985 NC_060925.1 CM039034.1 97.52 True fake: not a misassembly (possible transposable element) 140174022 140178224 139281996 139277792 NC_060925.1 CM039034.1 95.72 True fake: not a misassembly (possible transposable element) 139781624 139782533 139282932 139282025 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 173248 139603996 139608012 139287283 139283296 NC_060925.1 CM039034.1 95.64 True relocation, inconsistency = -1986913 141589730 141590717 139288456 139287475 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -27823 141612707 141615363 139293277 139290646 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 1995780 139614746 139616926 139295458 139293278 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 9898839 129712510 129715884 139298868 139295481 NC_060925.1 CM039034.1 96.88 True local misassembly 129707925 129716984 139307949 139298869 NC_060925.1 CM039034.1 96.91 True local misassembly 129707925 129712405 139312437 139307950 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -10085000 139791964 139792487 139313398 139312875 NC_060925.1 CM039034.1 97.33 True indel: indel (> 5bp) 139791242 139791889 139314046 139313399 NC_060925.1 CM039034.1 96.14 True indel: indel (> 5bp) 139790355 139790941 139314960 139314374 NC_060925.1 CM039034.1 96.93 True indel: indel (> 5bp) 139789454 139790354 139315884 139314984 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 4312752 135473663 135476453 139318949 139316133 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -6166679 141634941 141640341 139324348 139318950 NC_060925.1 CM039034.1 95.51 True relocation, inconsistency = 1069496 140558605 140565444 139331141 139324349 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 10844053 129713807 129714551 139331889 139331142 NC_060925.1 CM039034.1 95.68 True local misassembly 129710066 129714274 139336103 139331890 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -10382786 140091470 140092843 139337485 139336112 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = 10374767 129710066 129716294 139344117 139337894 NC_060925.1 CM039034.1 96.49 True relocation, inconsistency = -14578 129723450 129724425 139345311 139344336 NC_060925.1 CM039034.1 97.54 True indel: indel (> 5bp) 129722237 129723426 139346501 139345312 NC_060925.1 CM039034.1 97.98 True local misassembly 129721041 129722236 139347844 139346649 NC_060925.1 CM039034.1 96.99 True local misassembly 129708205 129713792 139354440 139348894 NC_060925.1 CM039034.1 95.23 True relocation, inconsistency = -572287 130274685 130279835 139360181 139355097 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = -11301921 141572610 141576605 139364167 139360182 NC_060925.1 CM039034.1 95.59 True relocation, inconsistency = 8403124 133167541 133169485 139366114 139364168 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 3489850 129676794 129677626 139367011 139366179 NC_060925.1 CM039034.1 96.88 True indel: indel (<= 5bp) 129675957 129676793 139367849 139367013 NC_060925.1 CM039034.1 97.49 True local misassembly 129675344 129675956 139368680 139368068 NC_060925.1 CM039034.1 98.21 True local misassembly 129673761 129675246 139370166 139368681 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -10831490 140500400 140503158 139375006 139372259 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 10823861 129675962 129676538 139375583 139375007 NC_060925.1 CM039034.1 97.47 True local misassembly 129675359 129675961 139376287 139375685 NC_060925.1 CM039034.1 98.22 True local misassembly 129676347 129681514 139381456 139376288 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -10150261 139823526 139825525 139384538 139382539 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -180582 140002655 140004107 139385991 139384539 NC_060925.1 CM039034.1 98.82 True local misassembly 140001778 140002654 139387336 139386460 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = -116365 140116074 140118142 139389409 139387337 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 2359726 137750923 137754400 139394864 139391357 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = -4226706 141975890 141977628 139396603 139394865 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 14528719 127444408 127446878 139396896 139399366 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 4731053 132178198 132182273 139403711 139399633 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -9881909 142059552 142060094 139404266 139403724 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = -47291 142105968 142106721 139405141 139404388 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 3988358 138113852 138117347 139408903 139405404 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 3886509 134225739 134226846 139410507 139409400 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -6737645 140962268 140963310 139411623 139410581 NC_060925.1 CM039034.1 98.18 True local misassembly 140961014 140962267 139413345 139412092 NC_060925.1 CM039034.1 97.93 True local misassembly 140959202 140960548 139414692 139413346 NC_060925.1 CM039034.1 97.85 True local misassembly 140962587 140963218 139415324 139414693 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 4502482 136458085 136460104 139417344 139415325 NC_060925.1 CM039034.1 98.02 True local misassembly 136454408 136457616 139420553 139417345 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 5620760 130831073 130833185 139423128 139421016 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -9675522 140504688 140506543 139425035 139423180 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 1682559 138819983 138822128 139427181 139425036 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 9081812 129734128 129738047 139431224 139427305 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 77126 129654184 129656063 139434042 139432163 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = -10109573 139762529 139763456 139435270 139434343 NC_060925.1 CM039034.1 99.35 True relocation, inconsistency = 10045719 129707925 129716057 139444166 139436023 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -1427432 131133534 131134151 139445989 139445372 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 503347 130626956 130629673 139449187 139446503 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 914233 129707925 129712640 139453993 139449270 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = 29936 129675882 129676962 139456100 139455020 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -906406 130579250 130581821 139459161 139456567 NC_060925.1 CM039034.1 95.67 True local misassembly 130579250 130581821 139462055 139459461 NC_060925.1 CM039034.1 95.71 True local misassembly 130583134 130586048 139465062 139462164 NC_060925.1 CM039034.1 96.24 True relocation, inconsistency = -9249124 139828195 139831940 139469124 139465380 NC_060925.1 CM039034.1 95.61 True relocation, inconsistency = 9893922 129930957 129933524 139472440 139469873 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 217158 129707925 129713798 139478322 139472441 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -3861270 133568231 133568757 139479286 139478760 NC_060925.1 CM039034.1 98.1 True indel: indel (> 5bp) 133567201 133568155 139480241 139479287 NC_060925.1 CM039034.1 96.86 True indel: indel (> 5bp) 133566342 133566841 139481029 139480530 NC_060925.1 CM039034.1 98.2 True indel: indel (<= 5bp) 133565200 133566129 139482172 139481243 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = -7381162 140939905 140946361 139488586 139482173 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -1152807 142092142 142092711 139489156 139488587 NC_060925.1 CM039034.1 96.26 True indel: indel (<= 5bp) 142091428 142092141 139489873 139489160 NC_060925.1 CM039034.1 95.38 True indel: indel (<= 5bp) 142089615 142091424 139491683 139489874 NC_060925.1 CM039034.1 97.29 True local misassembly 142088593 142089614 139492832 139491811 NC_060925.1 CM039034.1 96.58 True indel: indel (<= 5bp) 142087496 142088592 139493932 139492836 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 12375789 129708124 129711421 139497509 139494218 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = 2250027 127455841 127457033 139497827 139499019 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 6572093 134029127 134031432 139501373 139499020 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 4352092 129676096 129676962 139502312 139501446 NC_060925.1 CM039034.1 97.59 True fake: not a misassembly (possible transposable element) 129708786 129711823 139505354 139502313 NC_060925.1 CM039034.1 96.91 True fake: not a misassembly (possible transposable element) 129676096 129676914 139506283 139505465 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -35728 129707925 129711823 139510187 139506284 NC_060925.1 CM039034.1 97.0 True relocation, inconsistency = -8955 129714888 129716459 139512179 139510608 NC_060925.1 CM039034.1 97.9 True local misassembly 129712464 129714432 139514148 139512180 NC_060925.1 CM039034.1 97.87 True local misassembly 129711809 129716375 139519295 139514712 NC_060925.1 CM039034.1 96.92 True local misassembly 129706074 129716279 139529525 139519296 NC_060925.1 CM039034.1 97.05 True local misassembly 129710720 129712300 139531136 139529556 NC_060925.1 CM039034.1 96.65 True local misassembly 129708197 129710059 139533664 139531802 NC_060925.1 CM039034.1 96.52 True local misassembly 129707925 129712212 139537956 139533665 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = -12400980 142105029 142108904 139541838 139537957 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 12388479 129714888 129716459 139543500 139541929 NC_060925.1 CM039034.1 97.39 True local misassembly 129707925 129716370 139552260 139543794 NC_060925.1 CM039034.1 96.93 True local misassembly 129707925 129710165 139554504 139552261 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -10339046 140044357 140045929 139557118 139555546 NC_060925.1 CM039034.1 96.57 True indel: indel (> 5bp) 140043815 140044356 139557709 139557168 NC_060925.1 CM039034.1 98.52 True indel: indel (> 5bp) 140043084 140043739 139558365 139557710 NC_060925.1 CM039034.1 96.19 True indel: indel (> 5bp) 140041604 140042819 139559873 139558658 NC_060925.1 CM039034.1 96.22 True indel: indel (> 5bp) 140040337 140041101 139561107 139560343 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -2109154 142146372 142149490 139564193 139561108 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 2379251 139765417 139767078 139565897 139564236 NC_060925.1 CM039034.1 97.41 True indel: indel (<= 5bp) 139764402 139765415 139566911 139565898 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = -2386322 142146372 142149490 139571230 139568145 NC_060925.1 CM039034.1 96.57 True local misassembly 142146372 142149490 139574749 139571664 NC_060925.1 CM039034.1 96.51 True local misassembly 142146372 142149490 139578268 139575183 NC_060925.1 CM039034.1 96.57 True relocation, inconsistency = 1464155 140678665 140681783 139581787 139578702 NC_060925.1 CM039034.1 96.41 True local misassembly 140680497 140681783 139583507 139582221 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 1058267 139618225 139622229 139587502 139583508 NC_060925.1 CM039034.1 97.88 True local misassembly 139618701 139621753 139590545 139587503 NC_060925.1 CM039034.1 97.8 True local misassembly 139618623 139622229 139594142 139590546 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -176065 139790356 139794687 139598443 139594143 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = 168986 139619279 139621369 139600524 139598444 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 1615002 137998091 138004276 139606642 139600525 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -4151611 142146372 142149490 139609939 139606854 NC_060925.1 CM039034.1 96.41 True local misassembly 142148204 142149490 139611659 139610373 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = 2525974 139619279 139622229 139614600 139611660 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 1615002 137998091 138004276 139620718 139614601 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -4151611 142146372 142149490 139624015 139620930 NC_060925.1 CM039034.1 96.34 True local misassembly 142146372 142149490 139627534 139624449 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 12432133 129712467 129714204 139629306 139627569 NC_060925.1 CM039034.1 97.64 True local misassembly 129714049 129716370 139631744 139629410 NC_060925.1 CM039034.1 96.89 True local misassembly 129704506 129716279 139643546 139631745 NC_060925.1 CM039034.1 97.0 True local misassembly 129707884 129710759 139646426 139643547 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -8487 129707925 129716370 139654893 139646427 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -10336854 140043815 140044356 139655857 139655316 NC_060925.1 CM039034.1 98.34 True indel: indel (> 5bp) 140043084 140043739 139656513 139655858 NC_060925.1 CM039034.1 96.19 True indel: indel (> 5bp) 140041604 140042786 139658021 139656839 NC_060925.1 CM039034.1 96.37 True indel: indel (> 5bp) 140040303 140041101 139659289 139658491 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -641447 140678798 140681749 139662208 139659290 NC_060925.1 CM039034.1 96.41 True local misassembly 140678665 140681783 139665860 139662775 NC_060925.1 CM039034.1 96.54 True local misassembly 140678665 140681783 139669379 139666294 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = -1471259 142147972 142149490 139671331 139669813 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 8167000 133973726 133980971 139678507 139671332 NC_060925.1 CM039034.1 95.57 True relocation, inconsistency = -6708144 140678665 140681783 139681679 139678594 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = -1471259 142146372 142149490 139685198 139682113 NC_060925.1 CM039034.1 96.38 True local misassembly 142146372 142149490 139688717 139685632 NC_060925.1 CM039034.1 96.44 True local misassembly 142146372 142149490 139692236 139689151 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 6708361 135432599 135437577 139697636 139692670 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = -1005954 136432958 136438487 139703198 139697702 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 995322 135432599 135437577 139708224 139703257 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -6715442 142146429 142148040 139709813 139708225 NC_060925.1 CM039034.1 96.21 True relocation, inconsistency = 1464155 140678665 140681783 139713398 139710304 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 903355 139770781 139772972 139717927 139715736 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = 10064623 129702216 129703657 139721869 139720428 NC_060925.1 CM039034.1 98.06 True local misassembly 129701413 129702215 139723140 139722338 NC_060925.1 CM039034.1 98.03 True relocation, inconsistency = -9237890 138937479 138939302 139724964 139723141 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 4409686 134523189 134526584 139729566 139726173 NC_060925.1 CM039034.1 96.05 True relocation, inconsistency = -7450925 141970645 141973998 139733012 139729682 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 12221015 129744761 129748861 139737905 139733781 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = -8818244 138558898 138562646 139742035 139738264 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -1644264 140198709 140203008 139746490 139742189 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 9850110 130347058 130348598 139748031 139746491 NC_060925.1 CM039034.1 97.9 True indel: indel (<= 5bp) 130345778 130347057 139749312 139748033 NC_060925.1 CM039034.1 98.14 True local misassembly 130348007 130349328 139750608 139749313 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -9874126 140215817 140222132 139756926 139750609 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 10537161 129675882 129678277 139759700 139757305 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -10395960 140070608 140071499 139760934 139760043 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = 9442031 130622907 130626311 139766588 139763200 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = -10323714 140940222 140946135 139773019 139767074 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 11224087 129714742 129716134 139774412 139773020 NC_060925.1 CM039034.1 98.18 True indel: indel (> 5bp) 129712461 129714540 139776706 139774627 NC_060925.1 CM039034.1 97.16 True indel: indel (<= 5bp) 129710224 129712300 139778947 139776871 NC_060925.1 CM039034.1 96.82 True local misassembly 129710224 129711213 139781008 139780019 NC_060925.1 CM039034.1 97.68 True indel: indel (<= 5bp) 129707925 129710060 139783311 139781176 NC_060925.1 CM039034.1 96.44 True local misassembly 129707925 129713799 139790043 139784161 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = -8773872 138479964 138480818 139791876 139791022 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = 7663758 130813280 130816205 139794801 139791877 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -4060529 134871936 134873380 139796674 139795230 NC_060925.1 CM039034.1 98.2 True local misassembly 134870055 134871935 139799023 139797143 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 5118683 129744540 129748861 139805879 139801534 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = -10383526 140124868 140126649 139809077 139807296 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 10440969 129680432 129683898 139812545 139809078 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -17816 129696832 129698166 139813961 139812627 NC_060925.1 CM039034.1 97.23 True local misassembly 129695196 129696831 139815847 139814212 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -10082093 139773732 139777198 139819405 139815938 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 169635 139603507 139604096 139819995 139819406 NC_060925.1 CM039034.1 97.38 True indel: indel (> 5bp) 139602457 139603483 139821022 139819996 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -895049 140493375 140497484 139825150 139821044 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -1481014 141971645 141973998 139827894 139825541 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 1308157 140660379 140662995 139830981 139828387 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 10944099 129708205 129716279 139839077 139830982 NC_060925.1 CM039034.1 96.91 True local misassembly 129707925 129713471 139845906 139840352 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 29910 129675882 129676962 139848039 139846959 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -1141011 130815163 130816592 139849768 139848340 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 1101363 129707925 129713799 139855651 139849769 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = -12266951 141970824 141973998 139859680 139856529 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = 7099271 134870055 134871552 139861178 139859681 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 5143754 129722507 129724417 139864972 139863062 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -12251641 141969369 141972698 139869748 139866422 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 1469448 140495416 140499920 139874256 139869749 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 10127807 130363971 130366406 139877894 139875459 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = -5456353 135816815 135820270 139881404 139877948 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 6164544 129651704 129652270 139881971 139881405 NC_060925.1 CM039034.1 96.85 True indel: stretch of mismatches 129650842 129651652 139882833 139882023 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -10477302 140124868 140126649 139886109 139884328 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 10421214 129701478 129703653 139888285 139886110 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -10797792 140495672 140498804 139891909 139888751 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -1595427 142084099 142091098 139898938 139891910 NC_060925.1 CM039034.1 96.26 True relocation, inconsistency = 4339195 137743863 137744678 139899979 139899164 NC_060925.1 CM039034.1 98.28 True indel: indel (> 5bp) 137742550 137743862 139901367 139900055 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -1403515 139139806 139145577 139907627 139901855 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 2331728 136804777 136808077 139910904 139907628 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 1401403 135402535 135403304 139911743 139910974 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = -4306286 139708198 139708811 139912369 139911753 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 1725501 137981786 137982696 139913280 139912370 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 8265394 129708124 129716375 139921570 139913297 NC_060925.1 CM039034.1 96.86 True local misassembly 129710567 129712603 139923611 139921571 NC_060925.1 CM039034.1 96.62 True local misassembly 129707925 129715037 139930719 139923612 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = -4454724 134160704 134161658 139932664 139931710 NC_060925.1 CM039034.1 97.28 True indel: indel (> 5bp) 134159113 134160703 139934281 139932691 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -713424 134870055 134871943 139936763 139934875 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -5628887 140496412 140498688 139939273 139937017 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = 10747550 129744486 129748861 139943673 139939274 NC_060925.1 CM039034.1 96.77 True relocation, inconsistency = -3770194 133509061 133512253 139949291 139946100 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = 383077 133124613 133125553 139950662 139949722 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 3406512 129714771 129716185 139953992 139952578 NC_060925.1 CM039034.1 97.16 True local misassembly 129715191 129717014 139955816 139953993 NC_060925.1 CM039034.1 97.48 True local misassembly 129712464 129714539 139958557 139956482 NC_060925.1 CM039034.1 97.5 True indel: indel (<= 5bp) 129711522 129712300 139959503 139958725 NC_060925.1 CM039034.1 95.12 True local misassembly 129707925 129717913 139969470 139959643 NC_060925.1 CM039034.1 95.03 True relocation, inconsistency = -12380527 142083147 142088121 139974775 139969801 NC_060925.1 CM039034.1 97.05 True relocation, inconsistency = 6811586 135270854 135271560 139975482 139974776 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 5586329 129682674 129684305 139977333 139975702 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -674604 130353284 130356665 139981350 139977946 NC_060925.1 CM039034.1 97.06 True local misassembly 130353802 130355036 139982608 139981351 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -2744878 133094851 133098679 139986462 139982609 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = -1812977 134906447 134907827 139987815 139986463 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -6000530 140904011 140906292 139990781 139988500 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -701003 141600183 141605013 139995577 139990782 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 11926935 129672079 129673161 139996746 139995664 NC_060925.1 CM039034.1 98.02 True local misassembly 129672024 129675629 140000353 139996747 NC_060925.1 CM039034.1 98.0 True local misassembly 129674699 129675574 140001229 140000354 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -9972844 139640826 139647542 140007909 140001230 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 7103398 132535483 132537427 140009859 140007910 NC_060925.1 CM039034.1 97.38 True relocation, inconsistency = -9634749 142165988 142170231 140014096 140009860 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 12169293 129995092 129996694 140015697 140014097 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -7721222 137714314 137715645 140017697 140016366 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -2798939 140510380 140512727 140020570 140018223 NC_060925.1 CM039034.1 98.64 True local misassembly 140503316 140507399 140025044 140020935 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -1225661 141727562 141728908 140026459 140025113 NC_060925.1 CM039034.1 98.44 True local misassembly 141725722 141727093 140027831 140026460 NC_060925.1 CM039034.1 97.45 True indel: indel (> 5bp) 141724925 141725602 140028640 140027963 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = -389517 142109291 142113012 140033792 140030070 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = 3523795 138584369 138585495 140034886 140033793 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = -1075347 139656405 139658126 140038173 140036476 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = 9090801 130562900 130565557 140040877 140038220 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -10475918 141036581 141038745 140043114 140040950 NC_060925.1 CM039034.1 97.78 True indel: indel (<= 5bp) 141034870 141036580 140044826 140043116 NC_060925.1 CM039034.1 98.6 True local misassembly 141033113 141034402 140046116 140044827 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 911671 140116555 140121441 140051004 140046117 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 14465 140098562 140102089 140054532 140051005 NC_060925.1 CM039034.1 96.68 True relocation, inconsistency = -583357 140679007 140681581 140057421 140054870 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = 1056150 139618225 139622229 140062043 140058049 NC_060925.1 CM039034.1 97.83 True local misassembly 139618701 139621753 140065086 140062044 NC_060925.1 CM039034.1 97.78 True local misassembly 139618225 139622229 140069081 140065087 NC_060925.1 CM039034.1 97.85 True local misassembly 139618225 139621753 140072600 140069082 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 2158515 137454580 137459696 140077664 140072614 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 2016791 135434179 135437577 140081251 140077876 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -62933 135493578 135496958 140084761 140081405 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 1221302 134270819 134272104 140086217 140084933 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -5335463 139604619 139606281 140087880 140086218 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -964106 140566632 140568454 140089973 140088151 NC_060925.1 CM039034.1 97.31 True local misassembly 140563174 140563985 140093834 140093023 NC_060925.1 CM039034.1 98.15 True indel: indel (> 5bp) 140562566 140563150 140094419 140093835 NC_060925.1 CM039034.1 97.95 True local misassembly 140561671 140562565 140095782 140094888 NC_060925.1 CM039034.1 96.98 True indel: indel (<= 5bp) 140560481 140561670 140096973 140095784 NC_060925.1 CM039034.1 97.65 True relocation, scaffold gap is present, inconsistency = 6941381 133617433 133618105 140098640 140097968 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -1879526 135493578 135496958 140101997 140098641 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -4114606 139607504 139608183 140102677 140101998 NC_060925.1 CM039034.1 96.96 True local misassembly 139605591 139606281 140104144 140103454 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -964117 140566632 140569707 140107209 140104145 NC_060925.1 CM039034.1 96.94 True local misassembly 140563174 140563985 140111070 140110259 NC_060925.1 CM039034.1 98.15 True indel: indel (> 5bp) 140562566 140563150 140111655 140111071 NC_060925.1 CM039034.1 97.95 True local misassembly 140561671 140562565 140113018 140112124 NC_060925.1 CM039034.1 96.98 True indel: indel (<= 5bp) 140558127 140561670 140116563 140113020 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = 910917 139643465 139647173 140120296 140116600 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 6749170 132892119 132893567 140122472 140121024 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = -9089613 141981099 141981731 140123105 140122473 NC_060925.1 CM039034.1 96.98 True indel: indel (> 5bp) 141980352 141981075 140123829 140123106 NC_060925.1 CM039034.1 98.62 True local misassembly 141979170 141979883 140124543 140123830 NC_060925.1 CM039034.1 97.48 True indel: indel (> 5bp) 141977105 141979169 140126634 140124570 NC_060925.1 CM039034.1 97.19 True indel: indel (> 5bp) 141975975 141977081 140127741 140126635 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -98916 142073104 142074724 140129507 140127908 NC_060925.1 CM039034.1 96.8 True local misassembly 142073104 142074724 140131283 140129661 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 784526 141284270 141288425 140135555 140131436 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 1164000 140118341 140120269 140137483 140135556 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 474969 139639098 139642645 140141757 140138210 NC_060925.1 CM039034.1 98.28 True local misassembly 139630606 139631839 140143355 140142122 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 8688030 130940252 130942575 140145679 140143356 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -8838886 139774269 139778963 140150542 140145854 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 9347083 130418220 130427185 140159347 140150543 NC_060925.1 CM039034.1 95.23 True relocation, inconsistency = -3753906 134169138 134172008 140162312 140159465 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = -5483095 139651276 139652232 140163272 140162313 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 6421337 133227870 133229525 140165341 140163686 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -1610202 134835425 134838071 140167916 140165342 NC_060925.1 CM039034.1 95.28 True relocation, inconsistency = -174700 135008885 135009607 140169155 140168434 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -1452763 136458340 136461647 140172463 140169156 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = -674670 137131896 137133009 140173577 140172464 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = 3474042 133657337 133657853 140174094 140173578 NC_060925.1 CM039034.1 97.08 True indel: indel (<= 5bp) 133655730 133657335 140175700 140174095 NC_060925.1 CM039034.1 98.69 True local misassembly 133653909 133655217 140177620 140176312 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = -8213857 141865871 141867125 140179515 140178261 NC_060925.1 CM039034.1 98.25 True translocation 42940249 42940871 140180607 140179985 NC_060934.1 CM039034.1 97.11 True translocation 134168193 134168731 140182069 140181531 NC_060925.1 CM039034.1 96.66 True local misassembly 134167537 134168049 140182582 140182070 NC_060925.1 CM039034.1 98.44 True indel: indel (<= 5bp) 134166793 134167535 140183325 140182583 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -658670 134823378 134825214 140185409 140183574 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -5304943 140126682 140127811 140187048 140185919 NC_060925.1 CM039034.1 96.46 True indel: indel (<= 5bp) 140124253 140126680 140189476 140187049 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -1959580 142080289 142083832 140192970 140189477 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 6474277 135599960 135601986 140199022 140196996 NC_060925.1 CM039034.1 97.43 True local misassembly 135598543 135599491 140199971 140199023 NC_060925.1 CM039034.1 97.17 True relocation, inconsistency = -1562842 137159728 137161384 140201628 140199972 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 222815 136933391 136935515 140205149 140203026 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -10188 136942167 136943578 140206561 140205150 NC_060925.1 CM039034.1 98.55 True relocation, inconsistency = 9446636 127481685 127483052 140219040 140220406 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 12270952 139757597 139758428 140224803 140223999 NC_060925.1 CM039034.1 95.19 True relocation, inconsistency = 12279514 127473315 127474774 140228112 140229571 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 8121702 135599960 135601986 140235081 140233055 NC_060925.1 CM039034.1 97.29 True local misassembly 135598543 135599491 140236030 140235082 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -1562842 137159728 137161384 140237686 140236031 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -143218 137299424 137301548 140241208 140239084 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 348741 136949390 136950682 140242501 140241209 NC_060925.1 CM039034.1 99.02 True local misassembly 136948142 136949389 140244191 140242944 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 1344243 135599960 135601986 140248130 140246104 NC_060925.1 CM039034.1 97.29 True local misassembly 135598543 135599491 140249079 140248131 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = -1709636 137306512 137308178 140250746 140249080 NC_060925.1 CM039034.1 98.08 True local misassembly 137299424 137301548 140254258 140252134 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 348741 136949390 136950682 140255551 140254259 NC_060925.1 CM039034.1 99.02 True local misassembly 136948907 136951499 140258226 140255660 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -1628123 138573929 138576931 140261327 140258325 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 9828180 128742352 128743301 140263775 140264724 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = 3296255 132042732 132043531 140268699 140267900 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 1676711 130349135 130349879 140285585 140284841 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 1185691 129153607 129162922 140295410 140286107 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 2143627 127004388 127009696 140295694 140301026 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 199778 127209475 127210281 140301027 140301829 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 18510 127228921 127231682 140301959 140304720 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 2332140 129563823 129570009 140310944 140304721 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 489785 129073276 129073907 140311706 140311075 NC_060925.1 CM039034.1 97.31 True indel: indel (> 5bp) 129072509 129073249 140312447 140311707 NC_060925.1 CM039034.1 97.84 True local misassembly 129071049 129072508 140314149 140312690 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -538679 129608073 129609375 140315804 140314502 NC_060925.1 CM039034.1 98.7 True indel: indel (> 5bp) 129607249 129608049 140316605 140315805 NC_060925.1 CM039034.1 98.63 True indel: indel (> 5bp) 129604436 129606898 140319483 140317018 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = 495840 129103571 129106086 140324534 140321993 NC_060925.1 CM039034.1 96.54 True relocation, inconsistency = 1983837 127112025 127118891 140325377 140332242 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -178623 126940337 126946845 140332311 140338795 NC_060925.1 CM039034.1 97.7 True local misassembly 126942359 126945917 140338796 140342354 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 156342 127102260 127110157 140342355 140350337 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = -85554 127024604 127025343 140350338 140351077 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 2035981 129063524 129064721 140353256 140352060 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 2078245 126977100 126985278 140353257 140361433 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = 261926 127247486 127248675 140361715 140362904 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 1809337 129058683 129062748 140367636 140363575 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = -13090914 142148204 142149490 140369029 140367743 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 2525974 139618225 139622229 140373073 140369030 NC_060925.1 CM039034.1 96.65 True local misassembly 139618701 139621753 140376116 140373074 NC_060925.1 CM039034.1 97.9 True local misassembly 139618225 139622229 140380111 140376117 NC_060925.1 CM039034.1 97.9 True local misassembly 139618777 139621753 140383078 140380112 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 9870499 129744671 129748277 140386675 140383079 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -9877556 139618225 139622226 140390690 140386676 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 9870499 129744671 129747725 140393736 140390691 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -9877556 139618225 139622226 140397751 140393737 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 9870499 129745935 129747725 140399533 140397752 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -2524585 132266721 132270519 140403322 140399534 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = -9882497 142146425 142149217 140406091 140403323 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 2524198 139618365 139622226 140409956 140406092 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -1063572 140678725 140681783 140413135 140410110 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = 911544 139766179 139767078 140414137 140413238 NC_060925.1 CM039034.1 97.33 True local misassembly 139764402 139765415 140415880 140414867 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = 5533892 134224495 134229948 140421894 140416442 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 4549853 129671899 129674329 140424638 140422207 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -8824978 138495701 138496876 140425837 140424639 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = -3641603 142135928 142136906 140427213 140426235 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 531207 141598297 141604704 140433629 140427230 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 1435466 140158705 140162830 140437759 140433630 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -1923149 142080191 142081853 140439422 140437760 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 1171774 140907755 140908416 140440084 140439423 NC_060925.1 CM039034.1 98.06 True indel: indel (> 5bp) 140906935 140907731 140440881 140440085 NC_060925.1 CM039034.1 97.49 True local misassembly 140903447 140906292 140444625 140441780 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -1130647 142033385 142034093 140445334 140444626 NC_060925.1 CM039034.1 97.97 True indel: indel (<= 5bp) 142031631 142033384 140447089 140445336 NC_060925.1 CM039034.1 97.32 True local misassembly 142030222 142031630 140448966 140447558 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 3890771 138138166 138139109 140450251 140449308 NC_060925.1 CM039034.1 97.67 True local misassembly 138135405 138137715 140452794 140450484 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 7191227 130941263 130944177 140455708 140452795 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -11221450 142160815 142161946 140457605 140456475 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 1471739 140687656 140688685 140459025 140457996 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 3821953 136862240 136865212 140462462 140459516 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 7166331 129695312 129695908 140463059 140462463 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 129694329 129694908 140463987 140463408 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = -12415294 142103394 142107432 140470185 140466178 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 8872943 133227859 133229525 140472777 140471111 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -1610202 134835425 134838019 140475341 140472819 NC_060925.1 CM039034.1 95.26 True relocation, inconsistency = -4787524 139618099 139620655 140480191 140477635 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 6325896 133288657 133289265 140483737 140483129 NC_060925.1 CM039034.1 98.91 True relocation, inconsistency = -6400053 139685383 139688709 140486988 140483738 NC_060925.1 CM039034.1 95.79 True relocation, inconsistency = 4481827 135202555 135203394 140487989 140487150 NC_060925.1 CM039034.1 99.4 True indel: indel (> 5bp) 135201862 135202554 140488705 140488013 NC_060925.1 CM039034.1 98.7 True local misassembly 135201233 135201861 140489776 140489148 NC_060925.1 CM039034.1 98.41 True fake: not a misassembly (possible transposable element) 139689404 139692730 140493124 140489874 NC_060925.1 CM039034.1 95.61 True fake: not a misassembly (possible transposable element) 135202555 135203394 140494125 140493286 NC_060925.1 CM039034.1 99.4 True indel: indel (> 5bp) 135201862 135202554 140494841 140494149 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 4257616 130941708 130943531 140497402 140495556 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -3019402 133958408 133961018 140500127 140497494 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 2188730 131766129 131769677 140503630 140500128 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = -510896 132274432 132276556 140506223 140504099 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -7260442 139533897 139534873 140507177 140506224 NC_060925.1 CM039034.1 96.79 True relocation, inconsistency = 6280781 133251556 133253115 140508737 140507178 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 3996118 129239741 129251011 140524382 140513164 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = 2147872 127086076 127091819 140524432 140530113 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 1980712 129072698 129073247 140530829 140530280 NC_060925.1 CM039034.1 98.91 True local misassembly 129071605 129072483 140532104 140531227 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 2046948 127019068 127024656 140532105 140537720 NC_060925.1 CM039034.1 95.73 True relocation, inconsistency = 2025694 129050351 129052793 140540163 140537721 NC_060925.1 CM039034.1 98.66 True local misassembly 129047974 129048635 140541082 140540421 NC_060925.1 CM039034.1 96.47 True local misassembly 129048607 129049431 140541907 140541083 NC_060925.1 CM039034.1 97.5 True local misassembly 129042952 129045351 140544307 140541908 NC_060925.1 CM039034.1 99.0 True relocation, inconsistency = 290313 128745099 128752603 140544343 140551870 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 20670 128776388 129032896 140811539 140554985 NC_060925.1 CM039034.1 99.59 True indel: indel (> 5bp) 128773075 128776154 140814794 140811741 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 241680 129018288 129025316 140815248 140822246 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = 272864 128740803 128745118 140826867 140822552 NC_060925.1 CM039034.1 98.77 True local misassembly 128683096 128735142 140879491 140827523 NC_060925.1 CM039034.1 97.94 True local misassembly 128234895 128681376 141326022 140879492 NC_060925.1 CM039034.1 99.37 True relocation, inconsistency = 10028 128171789 128224866 141379183 141326023 NC_060925.1 CM039034.1 99.59 True translocation 6304603 6306786 141380102 141382285 NC_060945.1 CM039034.1 98.21 True indel: indel (<= 5bp) 6306787 6307926 141382287 141383426 NC_060945.1 CM039034.1 98.42 True indel: indel (> 5bp) 6307996 6310720 141383427 141386151 NC_060945.1 CM039034.1 98.09 True indel: indel (<= 5bp) 6310721 6312013 141386154 141387446 NC_060945.1 CM039034.1 98.3 True indel: indel (> 5bp) 6312569 6313590 141387932 141388953 NC_060945.1 CM039034.1 98.63 True indel: indel (> 5bp) 6313591 6314801 141389023 141390233 NC_060945.1 CM039034.1 97.52 True indel: indel (> 5bp) 6314802 6315889 141390302 141391389 NC_060945.1 CM039034.1 98.25 True indel: indel (<= 5bp) 6315891 6316477 141391390 141391976 NC_060945.1 CM039034.1 98.98 True local misassembly 6320383 6321834 141391977 141393428 NC_060945.1 CM039034.1 98.9 True indel: indel (<= 5bp) 6322053 6362212 141393648 141432688 NC_060945.1 CM039034.1 95.52 True indel: indel (<= 5bp) 6362609 6393323 141433086 141464391 NC_060945.1 CM039034.1 95.13 True local misassembly 6393638 6394559 141465446 141466367 NC_060945.1 CM039034.1 98.16 True local misassembly 6394700 6395300 141466368 141466968 NC_060945.1 CM039034.1 97.67 True local misassembly 6398223 6398763 141469918 141470458 NC_060945.1 CM039034.1 97.97 True indel: indel (> 5bp) 6398774 6399334 141470459 141471019 NC_060945.1 CM039034.1 97.68 True local misassembly 6401994 6402663 141474069 141474738 NC_060945.1 CM039034.1 98.36 True indel: indel (<= 5bp) 6403027 6403869 141475097 141475939 NC_060945.1 CM039034.1 97.63 True local misassembly 6405211 6405880 141477200 141477869 NC_060945.1 CM039034.1 98.06 True translocation 4896013 4897155 141480551 141479419 NC_060938.1 CM039034.1 95.8 True translocation 6406411 6407008 141494311 141494908 NC_060945.1 CM039034.1 97.49 True indel: indel (> 5bp) 6407236 6407800 141495191 141495755 NC_060945.1 CM039034.1 97.52 True indel: indel (> 5bp) 6408037 6408671 141495971 141496605 NC_060945.1 CM039034.1 97.8 True local misassembly 6409615 6411075 141497555 141499015 NC_060945.1 CM039034.1 97.19 True local misassembly 6412232 6412743 141500217 141500728 NC_060945.1 CM039034.1 98.05 True local misassembly 6414030 6414627 141502002 141502599 NC_060945.1 CM039034.1 98.16 True local misassembly 6415339 6416678 141503180 141504519 NC_060945.1 CM039034.1 98.13 True local misassembly 6417989 6418526 141505871 141506408 NC_060945.1 CM039034.1 97.4 True local misassembly 6420301 6420988 141508060 141508747 NC_060945.1 CM039034.1 96.95 True local misassembly 6422353 6423158 141510084 141510889 NC_060945.1 CM039034.1 97.02 True indel: indel (> 5bp) 6423429 6424271 141511135 141511977 NC_060945.1 CM039034.1 96.56 True relocation, inconsistency = -9796 6422040 6424271 141519542 141521774 NC_060945.1 CM039034.1 96.83 True translocation 4692376 4692959 141985616 141985033 NC_060938.1 CM039034.1 97.6 True local misassembly 4680618 4681426 141997186 141996378 NC_060938.1 CM039034.1 97.9 True local misassembly 4676479 4677072 141998952 141998359 NC_060938.1 CM039034.1 98.15 True indel: indel (<= 5bp) 4675643 4676478 141999793 141998958 NC_060938.1 CM039034.1 98.68 True indel: indel (> 5bp) 4674628 4675618 142000823 141999833 NC_060938.1 CM039034.1 97.98 True local misassembly 4671436 4671949 142004260 142003747 NC_060938.1 CM039034.1 98.83 True indel: indel (> 5bp) 4670100 4671277 142005571 142004394 NC_060938.1 CM039034.1 98.13 True local misassembly 4666918 4667720 142008707 142007905 NC_060938.1 CM039034.1 98.88 True local misassembly 4476307 4664034 142196665 142011241 NC_060938.1 CM039034.1 95.89 True indel: indel (> 5bp) 4374388 4476141 142298936 142196844 NC_060938.1 CM039034.1 98.06 True translocation 9319134 9349602 142298937 142329036 NC_060946.1 CM039034.1 97.14 True translocation 4332075 4350883 142347784 142329058 NC_060938.1 CM039034.1 96.27 True translocation 9369939 9374050 142348368 142352479 NC_060946.1 CM039034.1 97.64 True local misassembly 9374270 9375214 142352562 142353506 NC_060946.1 CM039034.1 97.78 True indel: indel (> 5bp) 9375282 9377792 142353507 142356017 NC_060946.1 CM039034.1 97.97 True translocation 4318248 4321537 142361695 142358424 NC_060938.1 CM039034.1 96.32 True indel: indel (<= 5bp) 4317052 4318141 142362891 142361801 NC_060938.1 CM039034.1 97.98 True translocation 9386479 9387385 142362951 142363857 NC_060946.1 CM039034.1 96.8 True indel: indel (<= 5bp) 9387386 9388656 142363859 142365129 NC_060946.1 CM039034.1 97.95 True translocation 4294806 4315468 142385942 142365156 NC_060938.1 CM039034.1 95.31 True local misassembly 4271539 4288862 142404001 142386507 NC_060938.1 CM039034.1 96.35 True indel: stretch of mismatches 4264514 4271301 142411032 142404239 NC_060938.1 CM039034.1 95.88 True local misassembly 4253761 4263567 142421356 142411771 NC_060938.1 CM039034.1 95.18 True translocation 9529991 9537244 142428536 142421359 NC_060946.1 CM039034.1 95.02 True translocation 4234002 4245539 142439937 142428537 NC_060938.1 CM039034.1 95.08 True relocation, inconsistency = 12438 4219483 4221526 142442018 142439975 NC_060938.1 CM039034.1 97.21 True translocation 9511677 9512827 142443906 142442756 NC_060946.1 CM039034.1 97.31 True local misassembly 9509102 9510175 142452488 142451415 NC_060946.1 CM039034.1 97.3 True indel: indel (> 5bp) 9507550 9509033 142453972 142452489 NC_060946.1 CM039034.1 97.44 True indel: indel (<= 5bp) 9506881 9507549 142454642 142453974 NC_060946.1 CM039034.1 98.06 True local misassembly 9506881 9507549 142456211 142455543 NC_060946.1 CM039034.1 98.06 True local misassembly 9505232 9506440 142457930 142456722 NC_060946.1 CM039034.1 97.52 True local misassembly 9503119 9503800 142460243 142459562 NC_060946.1 CM039034.1 96.77 True indel: indel (<= 5bp) 9501751 9503117 142461610 142460244 NC_060946.1 CM039034.1 97.95 True indel: indel (<= 5bp) 9498978 9501750 142464384 142461612 NC_060946.1 CM039034.1 96.25 True indel: indel (<= 5bp) 9494499 9498976 142468862 142464385 NC_060946.1 CM039034.1 96.76 True indel: indel (<= 5bp) 9493912 9494498 142469450 142468864 NC_060946.1 CM039034.1 98.64 True local misassembly 9492082 9493123 142471278 142470237 NC_060946.1 CM039034.1 96.64 True indel: indel (> 5bp) 9490645 9491817 142472729 142471557 NC_060946.1 CM039034.1 95.06 True indel: indel (<= 5bp) 9489657 9490643 142473716 142472730 NC_060946.1 CM039034.1 96.56 True indel: indel (> 5bp) 9487721 9489250 142475596 142474067 NC_060946.1 CM039034.1 97.84 True indel: indel (> 5bp) 9486673 9487720 142476713 142475666 NC_060946.1 CM039034.1 97.04 True local misassembly 9484466 9485897 142478921 142477489 NC_060946.1 CM039034.1 97.14 True local misassembly 9477430 9483892 142485886 142479425 NC_060946.1 CM039034.1 96.81 True translocation 4181671 4182337 142486622 142485956 NC_060938.1 CM039034.1 97.6 True indel: indel (<= 5bp) 4179353 4181642 142488938 142486649 NC_060938.1 CM039034.1 96.03 True indel: indel (> 5bp) 4177073 4178846 142491191 142489418 NC_060938.1 CM039034.1 98.08 True indel: indel (<= 5bp) 4176444 4177072 142491821 142491193 NC_060938.1 CM039034.1 97.93 True local misassembly 4175832 4176443 142492739 142492128 NC_060938.1 CM039034.1 98.04 True indel: indel (<= 5bp) 4174240 4175831 142494332 142492741 NC_060938.1 CM039034.1 97.11 True indel: indel (<= 5bp) 4173091 4174239 142495482 142494334 NC_060938.1 CM039034.1 96.87 True indel: indel (<= 5bp) 4171636 4173089 142496936 142495483 NC_060938.1 CM039034.1 97.39 True indel: indel (> 5bp) 4170451 4171635 142498189 142497005 NC_060938.1 CM039034.1 98.23 True indel: indel (> 5bp) 4165878 4170129 142502695 142498444 NC_060938.1 CM039034.1 97.46 True indel: indel (<= 5bp) 4164308 4165877 142504266 142502697 NC_060938.1 CM039034.1 98.47 True indel: indel (> 5bp) 4163716 4164307 142504925 142504334 NC_060938.1 CM039034.1 96.28 True indel: indel (<= 5bp) 4162878 4163715 142505764 142504927 NC_060938.1 CM039034.1 95.82 True indel: indel (> 5bp) 4162031 4162877 142506627 142505781 NC_060938.1 CM039034.1 96.46 True indel: indel (> 5bp) 4159336 4161863 142509311 142506784 NC_060938.1 CM039034.1 97.9 True indel: indel (> 5bp) 4158379 4159335 142510337 142509381 NC_060938.1 CM039034.1 98.01 True local misassembly 4155248 4158378 142513673 142510543 NC_060938.1 CM039034.1 97.29 True indel: stretch of mismatches 4153965 4154985 142514956 142513936 NC_060938.1 CM039034.1 95.49 True local misassembly 4152913 4153568 142516211 142515556 NC_060938.1 CM039034.1 95.88 True indel: indel (> 5bp) 4151851 4152844 142517205 142516212 NC_060938.1 CM039034.1 97.89 True local misassembly 4150426 4151729 142519111 142517808 NC_060938.1 CM039034.1 97.39 True local misassembly 4148210 4148949 142521333 142520594 NC_060938.1 CM039034.1 97.7 True local misassembly 4142294 4144097 142523603 142521800 NC_060938.1 CM039034.1 97.51 True indel: stretch of mismatches 4141176 4141937 142524721 142523960 NC_060938.1 CM039034.1 97.77 True indel: indel (> 5bp) 4139128 4140961 142526702 142524869 NC_060938.1 CM039034.1 97.66 True indel: indel (> 5bp) 4137924 4138594 142527839 142527169 NC_060938.1 CM039034.1 97.32 True indel: indel (> 5bp) 4136032 4137923 142529800 142527909 NC_060938.1 CM039034.1 97.46 True indel: indel (> 5bp) 4134140 4136024 142531685 142529801 NC_060938.1 CM039034.1 95.54 True indel: indel (<= 5bp) 4132937 4134138 142532887 142531686 NC_060938.1 CM039034.1 97.84 True indel: indel (> 5bp) 4132093 4132675 142533798 142533216 NC_060938.1 CM039034.1 96.4 True indel: indel (<= 5bp) 4131075 4132091 142534815 142533799 NC_060938.1 CM039034.1 96.36 True local misassembly 4129042 4130511 142537159 142535690 NC_060938.1 CM039034.1 97.96 True local misassembly 4127510 4128766 142538416 142537160 NC_060938.1 CM039034.1 98.49 True indel: indel (> 5bp) 4124125 4127440 142541732 142538417 NC_060938.1 CM039034.1 96.2 True indel: indel (<= 5bp) 4122218 4124123 142543638 142541733 NC_060938.1 CM039034.1 96.01 True indel: indel (> 5bp) 4121438 4122217 142544486 142543707 NC_060938.1 CM039034.1 97.18 True indel: indel (> 5bp) 4119669 4121327 142546275 142544617 NC_060938.1 CM039034.1 97.41 True indel: indel (<= 5bp) 4119085 4119667 142546858 142546276 NC_060938.1 CM039034.1 97.77 True indel: indel (<= 5bp) 4118583 4119084 142547361 142546860 NC_060938.1 CM039034.1 95.42 True indel: indel (<= 5bp) 4114241 4118103 142551704 142547842 NC_060938.1 CM039034.1 96.92 True indel: indel (<= 5bp) 4113563 4114238 142552380 142551705 NC_060938.1 CM039034.1 98.08 True indel: indel (<= 5bp) 4111984 4113562 142553960 142552382 NC_060938.1 CM039034.1 97.34 True indel: indel (> 5bp) 4111101 4111983 142554912 142554030 NC_060938.1 CM039034.1 98.07 True local misassembly 4100565 4108259 142565093 142557419 NC_060938.1 CM039034.1 96.58 True local misassembly 4098818 4099413 142567168 142566573 NC_060938.1 CM039034.1 98.32 True indel: indel (> 5bp) 4097807 4098692 142568241 142567356 NC_060938.1 CM039034.1 98.76 True indel: indel (<= 5bp) 4097302 4097806 142568747 142568243 NC_060938.1 CM039034.1 97.62 True local misassembly 4085351 4096130 142580623 142569850 NC_060938.1 CM039034.1 97.01 True translocation 9563667 9566964 142590410 142593707 NC_060946.1 CM039034.1 96.36 True local misassembly 9567498 9572697 142594723 142599922 NC_060946.1 CM039034.1 97.46 True local misassembly 9572698 9573446 142600672 142601420 NC_060946.1 CM039034.1 95.59 True indel: indel (<= 5bp) 9573448 9576616 142601421 142604589 NC_060946.1 CM039034.1 97.38 True local misassembly 9576753 9578194 142604590 142606031 NC_060946.1 CM039034.1 96.9 True local misassembly 9580860 9583697 142606032 142608868 NC_060946.1 CM039034.1 96.65 True relocation, inconsistency = 14886 9601579 9603950 142611864 142614237 NC_060946.1 CM039034.1 98.06 True relocation, inconsistency = 13288 9617681 9622979 142614680 142620030 NC_060946.1 CM039034.1 96.25 True local misassembly 9617661 9622979 142620320 142625692 NC_060946.1 CM039034.1 96.36 True local misassembly 9617661 9622979 142625982 142631352 NC_060946.1 CM039034.1 96.29 True local misassembly 9617661 9621264 142631642 142635297 NC_060946.1 CM039034.1 95.48 True local misassembly 9617661 9622979 142635670 142641040 NC_060946.1 CM039034.1 96.29 True local misassembly 9617661 9622979 142641330 142646700 NC_060946.1 CM039034.1 96.23 True local misassembly 9617661 9619080 142646990 142648409 NC_060946.1 CM039034.1 97.54 True translocation 128127389 128171818 142692841 142648410 NC_060925.1 CM039034.1 99.74 True local misassembly 128071672 128127623 142749308 142693285 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = 15741 127710196 128055930 143095206 142749309 NC_060925.1 CM039034.1 99.34 True relocation, inconsistency = -19090 127695069 127706181 143129226 143118311 NC_060925.1 CM039034.1 95.38 True local misassembly 127679428 127690686 143140539 143129227 NC_060925.1 CM039034.1 96.77 True local misassembly 127670444 127671749 143143024 143141719 NC_060925.1 CM039034.1 99.39 True indel: indel (<= 5bp) 127669548 127670068 143143925 143143405 NC_060925.1 CM039034.1 99.04 True local misassembly 127668082 127668712 143146335 143145705 NC_060925.1 CM039034.1 99.21 True indel: indel (> 5bp) 127667448 127668003 143146984 143146429 NC_060925.1 CM039034.1 99.82 True local misassembly 127665329 127665848 143148978 143148459 NC_060925.1 CM039034.1 99.04 True relocation, inconsistency = 84278 127561537 127562048 143168492 143167981 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -9244 127568770 127569288 143170503 143169985 NC_060925.1 CM039034.1 97.69 True local misassembly 127562493 127563491 143176871 143175873 NC_060925.1 CM039034.1 99.1 True indel: indel (<= 5bp) 127561261 127562048 143178098 143177311 NC_060925.1 CM039034.1 99.62 True local misassembly 127558612 127559203 143180767 143180176 NC_060925.1 CM039034.1 99.83 True local misassembly 127558612 127559203 143181821 143181230 NC_060925.1 CM039034.1 99.83 True indel: indel (> 5bp) 127557453 127558187 143182960 143182226 NC_060925.1 CM039034.1 99.73 True local misassembly 127555797 127556560 143184576 143183813 NC_060925.1 CM039034.1 99.08 True indel: indel (> 5bp) 127554925 127555617 143185463 143184771 NC_060925.1 CM039034.1 98.99 True local misassembly 127551970 127552523 143189077 143188524 NC_060925.1 CM039034.1 99.28 True indel: indel (> 5bp) 127551191 127551787 143189811 143189215 NC_060925.1 CM039034.1 99.66 True indel: indel (> 5bp) 127550190 127550720 143190776 143190246 NC_060925.1 CM039034.1 99.62 True local misassembly 127548302 127548967 143192794 143192129 NC_060925.1 CM039034.1 99.25 True indel: indel (> 5bp) 127547437 127548061 143193683 143193059 NC_060925.1 CM039034.1 99.36 True local misassembly 127545881 127546561 143195048 143194368 NC_060925.1 CM039034.1 98.83 True local misassembly 127544393 127545133 143196751 143196011 NC_060925.1 CM039034.1 99.06 True local misassembly 127542735 127543316 143198349 143197768 NC_060925.1 CM039034.1 98.97 True indel: indel (> 5bp) 127542008 127542602 143199086 143198492 NC_060925.1 CM039034.1 98.99 True relocation, inconsistency = 31205 127494667 127510511 143215438 143199378 NC_060925.1 CM039034.1 96.31 True local misassembly 127491542 127495993 143219920 143215439 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 9457269 136953263 136955897 143219921 143222553 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 9515848 127436540 127437414 143223428 143222554 NC_060925.1 CM039034.1 97.67 True local misassembly 127435648 127436451 143224502 143223699 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -45312 127477831 127480891 143227629 143224571 NC_060925.1 CM039034.1 97.56 True local misassembly 127477662 127480891 143230830 143227630 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 51978 127422309 127425436 143234205 143231078 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = 2226602 129652039 129652909 143234206 143235076 NC_060925.1 CM039034.1 96.74 True local misassembly 129649377 129650018 143236006 143236647 NC_060925.1 CM039034.1 97.98 True local misassembly 129650827 129652399 143236987 143238559 NC_060925.1 CM039034.1 97.52 True local misassembly 129650847 129653377 143239224 143241754 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 2214357 127435156 127436489 143243074 143241755 NC_060925.1 CM039034.1 96.15 True local misassembly 127427136 127428980 143244919 143243075 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 5773841 133202822 133207855 143244920 143249954 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -3557386 129650470 129652223 143249955 143251708 NC_060925.1 CM039034.1 97.1 True local misassembly 129653467 129655403 143253005 143254940 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = 12659 129668069 129669825 143254947 143256703 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 2242734 127422309 127425333 143259728 143256705 NC_060925.1 CM039034.1 97.52 True fake: not a misassembly (possible transposable element) 127484117 127485037 143260885 143259965 NC_060925.1 CM039034.1 97.29 True fake: not a misassembly (possible transposable element) 127425467 127426479 143261898 143260886 NC_060925.1 CM039034.1 96.64 True indel: indel (> 5bp) 127424533 127425166 143262805 143262172 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = 12193851 139620186 139621231 143263974 143265019 NC_060925.1 CM039034.1 97.9 True indel: indel (> 5bp) 139621232 139621920 143265043 143265731 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = 12194389 127421430 127426842 143271118 143265732 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 2239784 129666916 129668492 143271408 143272984 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 10430218 140098711 140102561 143272985 143276812 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 12615971 127482122 127482739 143277430 143276813 NC_060925.1 CM039034.1 95.9 True fake: not a misassembly (possible transposable element) 142032363 142037625 143280233 143285494 NC_060925.1 CM039034.1 96.89 True fake: not a misassembly (possible transposable element) 127462730 127468550 143295245 143289350 NC_060925.1 CM039034.1 95.76 True relocation, inconsistency = 11179635 138648186 138648717 143295246 143295777 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -8302249 130346902 130348396 143296211 143297706 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 507823 130859250 130860034 143300737 143301521 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 10045985 140908969 140911624 143304471 143307122 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 1134837 142047098 142049155 143307759 143309816 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -1865124 140184342 140186308 143310127 143312093 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -9841615 130345127 130346936 143312527 143314337 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = 56312 130405673 130407683 143316762 143318773 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 10531210 140939371 140941254 143319251 143321161 NC_060925.1 CM039034.1 95.81 True relocation, inconsistency = -6896841 134044414 134045993 143321162 143322741 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 5748999 139804443 139805981 143332192 143333730 NC_060925.1 CM039034.1 98.51 True local misassembly 139805982 139806579 143334174 143334771 NC_060925.1 CM039034.1 97.83 True indel: indel (> 5bp) 139806580 139808146 143334781 143336347 NC_060925.1 CM039034.1 98.85 True relocation, inconsistency = 2286811 142101455 142103208 143342845 143344562 NC_060925.1 CM039034.1 95.67 True relocation, inconsistency = -12107042 129996324 130001541 143344720 143349941 NC_060925.1 CM039034.1 95.7 True relocation, inconsistency = 4802263 134803805 134804987 143349942 143351098 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = 1738934 136544504 136548644 143351681 143355820 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = -4073823 132476523 132480057 143357522 143361029 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 2349724 134830068 134833657 143361316 143364899 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = -7153 134829262 134833325 143367657 143371692 NC_060925.1 CM039034.1 97.96 True fake: not a misassembly (possible transposable element) 132475760 132476589 143371732 143372561 NC_060925.1 CM039034.1 97.71 True fake: not a misassembly (possible transposable element) 134828168 134830241 143372615 143374688 NC_060925.1 CM039034.1 98.17 True indel: indel (<= 5bp) 134830247 134832388 143374689 143376830 NC_060925.1 CM039034.1 98.69 True local misassembly 134832389 134833594 143377299 143378504 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -1599126 133234793 133238350 143378829 143382407 NC_060925.1 CM039034.1 97.54 True local misassembly 133234937 133239345 143383015 143387418 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -2832796 130406660 130408309 143387529 143389155 NC_060925.1 CM039034.1 96.73 True local misassembly 130406660 130409413 143390360 143393123 NC_060925.1 CM039034.1 96.09 True relocation, inconsistency = 9778648 140188062 140188752 143393124 143393814 NC_060925.1 CM039034.1 96.94 True relocation, inconsistency = -3980309 136208534 136210947 143393905 143396318 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = 3407194 139618234 139618765 143396411 143396942 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -4788390 134830376 134835536 143396943 143402152 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = -5085662 129750181 129754653 143402459 143406921 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 3478076 133232901 133239398 143407093 143413559 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -3242544 129996855 130000344 143413560 143417022 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 7770154 137770499 137771147 143417023 143417671 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = -7364157 130407196 130410359 143417877 143421051 NC_060925.1 CM039034.1 95.97 True relocation, inconsistency = 2064621 132474983 132475537 143421054 143421608 NC_060925.1 CM039034.1 98.2 True local misassembly 132475760 132476589 143421667 143422496 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -2450398 130026245 130030365 143422550 143426670 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 3624002 133654409 133657565 143426712 143429863 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = -1176787 132480779 132485141 143429864 143434226 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 1703887 134189029 134194019 143434227 143439241 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -959077 133234943 133237437 143439242 143441731 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -2831488 130406660 130407334 143442442 143443093 NC_060925.1 CM039034.1 95.98 True relocation, inconsistency = 4880820 135288155 135290947 143443094 143445886 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 4321218 139612258 139614537 143445979 143448281 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = -1125959 138488579 138493799 143448282 143453479 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -8749615 129744185 129746584 143453480 143455879 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 11521900 141268783 141271057 143456178 143458452 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -11238789 130032269 130034835 143458453 143461094 NC_060925.1 CM039034.1 95.27 True relocation, inconsistency = 10623958 140658909 140660393 143461210 143462694 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -10910206 129750188 129752299 143462695 143464806 NC_060925.1 CM039034.1 96.73 True local misassembly 129752300 129753782 143464901 143466383 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 7376577 137130388 137133709 143466412 143469733 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -180447 136953263 136954495 143469734 143470966 NC_060925.1 CM039034.1 98.68 True local misassembly 136954964 136956729 143470967 143472732 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = -1248806 135710434 135711197 143475243 143476006 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = 8265203 127444119 127444881 143477118 143476356 NC_060925.1 CM039034.1 98.69 True indel: indel (> 5bp) 127443329 127444118 143477924 143477135 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 143478597 143477925 NC_060925.1 CM039034.1 98.66 True local misassembly 127441373 127442264 143479489 143478598 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 13631573 141080865 141083088 143486517 143488767 NC_060925.1 CM039034.1 96.53 True relocation, inconsistency = -11332035 129751699 129752440 143489413 143490155 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 2505984 132258425 132263883 143490156 143495591 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 972097 133236460 133238710 143496071 143498299 NC_060925.1 CM039034.1 96.49 True indel: stretch of mismatches 133238980 133240718 143498569 143500282 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -1187484 132055338 132058345 143502386 143505416 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 7532754 139592257 139593636 143506574 143507953 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = -574676 139018961 139023049 143507954 143512042 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -5746029 133287552 133289119 143522574 143524141 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 1868394 135157991 135161756 143524619 143528358 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -1500852 133665315 133667918 143532769 143535346 NC_060925.1 CM039034.1 96.35 True relocation, inconsistency = 1489595 135157991 135161729 143535824 143539536 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -3109219 132055338 132058345 143542364 143545394 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = 1204111 133262457 133265057 143545395 143547995 NC_060925.1 CM039034.1 98.15 True local misassembly 133265391 133266366 143548796 143549771 NC_060925.1 CM039034.1 99.49 True relocation, inconsistency = 750656 134017091 134020098 143549840 143552870 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 8115258 142135357 142136585 143552871 143554099 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -669238 141467348 141468863 143554100 143555615 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = -407514 141061350 141063327 143555616 143557593 NC_060925.1 CM039034.1 97.22 True local misassembly 141063796 141065008 143557594 143558806 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -5534248 135530954 135532438 143559000 143560484 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -5538120 129994319 129999095 143560485 143565277 NC_060925.1 CM039034.1 97.29 True local misassembly 129992613 129999095 143565475 143571920 NC_060925.1 CM039034.1 97.67 True local misassembly 129992613 129996862 143572118 143576340 NC_060925.1 CM039034.1 97.81 True local misassembly 129993777 129994765 143576409 143577397 NC_060925.1 CM039034.1 99.09 True indel: indel (<= 5bp) 129994767 129996855 143577398 143579486 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = -52210 129944766 129948912 143579607 143583725 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 455786 130407571 130408225 143586598 143587252 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 11562355 141970752 141972513 143587424 143589185 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = -8739513 133234130 133241154 143590315 143597148 NC_060925.1 CM039034.1 95.33 True local misassembly 133234912 133236619 143597149 143598851 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 418141 133654761 133659074 143598852 143603186 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -3407655 130251420 130253083 143603187 143604850 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 11501476 141754560 141761258 143604851 143611485 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = -1055414 140709058 140710541 143614699 143616182 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 13260877 127443171 127448180 143621208 143616183 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 7642312 135092989 135096249 143623705 143626965 NC_060925.1 CM039034.1 98.41 True relocation, inconsistency = 6544690 141642330 141643193 143628356 143629219 NC_060925.1 CM039034.1 99.07 True local misassembly 141643662 141644768 143629220 143630326 NC_060925.1 CM039034.1 98.28 True indel: indel (<= 5bp) 141644769 141645506 143630330 143631067 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -665486 140980021 140981152 143631068 143632199 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -7722777 133259356 133261395 143633180 143635224 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -27066 133234330 133240021 143635225 143640909 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 777732 134020685 134023860 143643841 143647016 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 6500647 140524701 140526968 143647210 143649477 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = -2036350 138490624 138495764 143649483 143654651 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -3663950 134831815 134833685 143654652 143656522 NC_060925.1 CM039034.1 98.27 True indel: indel (> 5bp) 134833686 134836080 143656549 143658943 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 3301559 138137841 138139551 143659145 143660855 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -8389311 129750241 129754653 143660856 143665258 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = 5073207 134828008 134833657 143665406 143671013 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -1179234 133654424 133655118 143671014 143671708 NC_060925.1 CM039034.1 97.95 True local misassembly 133655566 133657087 143671709 143673230 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = -3422963 130234125 130234707 143673231 143673813 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 6894223 137129123 137132344 143674006 143677227 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 1868671 139001476 139003832 143677688 143680044 NC_060925.1 CM039034.1 97.96 True fake: not a misassembly (possible transposable element) 131126928 131131083 143680070 143684225 NC_060925.1 CM039034.1 97.45 True fake: not a misassembly (possible transposable element) 139003111 139003832 143684226 143684947 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -6523095 132480763 132484960 143684973 143689170 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -1358738 131126928 131131083 143689876 143694031 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 2523912 133655301 133660170 143694337 143699195 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 3632346 137292574 137296581 143699253 143703336 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = 147832 137444414 137445964 143703337 143704889 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -2577931 134868279 134871758 143705135 143708614 NC_060925.1 CM039034.1 97.99 True local misassembly 134872227 134873584 143708615 143709972 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 2419031 137292633 137296588 143709990 143714021 NC_060925.1 CM039034.1 96.21 True relocation, inconsistency = -7544176 129752413 129754653 143714022 143716243 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 9491273 139245927 139247694 143716244 143718011 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 1245484 140493640 140495684 143718473 143720517 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -8564913 131933600 131936784 143723346 143726504 NC_060925.1 CM039034.1 97.8 True local misassembly 131933597 131936784 143727861 143731022 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 975391 132913532 132916719 143732379 143735540 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = 3606340 136524505 136529899 143736986 143742356 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -3290410 133239490 133240356 143742357 143743223 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = -3182148 130058212 130061631 143743227 143746669 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 6463330 136525911 136529899 143747619 143751607 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -4262127 132267773 132268639 143751608 143752474 NC_060925.1 CM039034.1 98.28 True local misassembly 132269108 132270417 143752475 143753784 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 4255492 136525911 136529899 143753786 143757774 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -2870046 133659854 133660720 143757775 143758641 NC_060925.1 CM039034.1 98.28 True local misassembly 133661189 133662498 143758642 143759951 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 8302554 141967901 141969317 143762800 143764216 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -4234048 137735413 137737415 143764360 143766368 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -5805010 131933597 131937151 143767560 143771088 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = -1063177 130873975 130876691 143771089 143773779 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = -471834 130405797 130408245 143774719 143777168 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 6880138 137290813 137294113 143779598 143782996 NC_060925.1 CM039034.1 95.18 True relocation, inconsistency = -7541940 129752174 129754181 143782997 143785004 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = 5045483 134804152 134804877 143789492 143790217 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -1163964 133640983 133644251 143790287 143793560 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = -2742668 130901612 130905049 143793589 143797000 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 9690118 140595168 140595814 143797001 143797647 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 1426275 142022616 142026233 143798174 143801832 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = 14577235 127444119 127445230 143803094 143801983 NC_060925.1 CM039034.1 98.47 True indel: indel (> 5bp) 127443329 127444118 143803900 143803111 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 143804573 143803901 NC_060925.1 CM039034.1 98.22 True local misassembly 127441319 127442264 143805519 143804574 NC_060925.1 CM039034.1 98.39 True local misassembly 127444119 127446553 143807954 143805520 NC_060925.1 CM039034.1 98.4 True indel: indel (> 5bp) 127443329 127444118 143808760 143807971 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 127442655 127443327 143809433 143808761 NC_060925.1 CM039034.1 98.96 True local misassembly 127441731 127442264 143809967 143809434 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 7861698 135303963 135310049 143809968 143816051 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 1202068 136512118 136514383 143816052 143818317 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 3104203 139618587 139621997 143818318 143821728 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = -8681174 130940824 130941777 143821729 143822682 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = -911737 130030041 130033946 143822683 143826588 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = 24649 130058596 130061272 143826589 143829288 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 11727865 141789138 141793015 143829289 143833164 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -4654722 137139417 137139997 143834288 143834868 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -3894145 133245914 133249256 143834930 143838277 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 7342495 140591752 140592732 143838278 143839258 NC_060925.1 CM039034.1 96.96 True relocation, inconsistency = 1401203 141994452 141997429 143839775 143842727 NC_060925.1 CM039034.1 97.35 True local misassembly 141994452 141997429 143842833 143845785 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = -1401031 140596438 140597102 143845825 143846489 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 1423044 142022616 142026233 143848959 143852568 NC_060925.1 CM039034.1 96.78 True relocation, inconsistency = 14577235 127444119 127445230 143853830 143852719 NC_060925.1 CM039034.1 98.47 True indel: indel (> 5bp) 127443329 127444118 143854636 143853847 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 127442655 127443327 143855309 143854637 NC_060925.1 CM039034.1 98.22 True local misassembly 127441241 127442264 143856333 143855310 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 9426171 136868436 136870384 143856334 143858282 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 1562829 138433298 138434290 143858367 143859359 NC_060925.1 CM039034.1 98.79 True indel: indel (> 5bp) 138434291 138435182 143859383 143860274 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = -4799359 133636123 133639465 143860574 143863921 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 6952286 140591752 140592732 143863922 143864902 NC_060925.1 CM039034.1 97.06 True local misassembly 140593203 140594688 143865816 143867301 NC_060925.1 CM039034.1 97.85 True local misassembly 140595156 140595814 143867302 143867960 NC_060925.1 CM039034.1 98.48 True fake: not a misassembly (possible transposable element) 141994452 141997429 143868477 143871429 NC_060925.1 CM039034.1 97.35 True fake: not a misassembly (possible transposable element) 140596438 140597102 143871469 143872133 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = -115021 140484551 140489905 143874603 143879956 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 13040900 127442655 127443327 143880952 143880280 NC_060925.1 CM039034.1 98.37 True local misassembly 127441241 127442264 143881976 143880953 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 9426171 136868436 136870384 143881977 143883925 NC_060925.1 CM039034.1 98.92 True relocation, inconsistency = 4422964 141294150 141297293 143884727 143887844 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -3178764 138121678 138122993 143890993 143892276 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -4208012 133914982 133919071 143892277 143896366 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = 8065650 141984722 141986800 143896367 143898419 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -3868271 138121678 138122993 143901568 143902851 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -7035219 131087775 131090266 143902852 143905343 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 10904494 141994761 141999050 143905344 143909585 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = -4885651 137114916 137119007 143911102 143915194 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 3108565 140227573 140235968 143915195 143923447 NC_060925.1 CM039034.1 96.33 True relocation, inconsistency = 12773045 127453776 127454527 143924199 143923448 NC_060925.1 CM039034.1 98.56 True indel: indel (> 5bp) 127451458 127453531 143926510 143924437 NC_060925.1 CM039034.1 96.19 True relocation, inconsistency = 11674211 139127743 139129118 143926511 143927886 NC_060925.1 CM039034.1 98.67 True local misassembly 139125332 139126101 143928099 143928868 NC_060925.1 CM039034.1 99.22 True indel: indel (> 5bp) 139126125 139126781 143928869 143929525 NC_060925.1 CM039034.1 99.09 True local misassembly 139127088 139129118 143930295 143932325 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = 1560624 140689743 140690637 143932326 143933220 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -11019847 129671274 129674250 143933704 143936679 NC_060925.1 CM039034.1 98.0 True relocation, inconsistency = 5157500 134831751 134836276 143936680 143941231 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -4891013 129945393 129946297 143941361 143942265 NC_060925.1 CM039034.1 98.34 True local misassembly 129947290 129949616 143942790 143945116 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 3703919 133653536 133655235 143945117 143946816 NC_060925.1 CM039034.1 98.44 True local misassembly 133655706 133657036 143946817 143948147 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = -1694815 131962423 131966599 143948349 143952538 NC_060925.1 CM039034.1 96.95 True relocation, inconsistency = 6516623 138483423 138487859 143952739 143957150 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -211927 138275933 138278124 143957151 143959342 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -7876337 130405797 130408245 143963352 143965801 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 3570170 133978524 133981551 143965910 143968937 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 2323996 136305964 136309744 143969354 143973134 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 8861457 127443329 127444118 143974312 143973523 NC_060925.1 CM039034.1 98.86 True indel: indel (<= 5bp) 127442655 127443327 143974985 143974313 NC_060925.1 CM039034.1 98.96 True local misassembly 127441222 127442264 143976028 143974986 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 5471267 132913532 132917086 143976029 143979557 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 2163233 135081131 135085350 143980369 143984621 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -3041598 132043753 132046714 143984622 143987557 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = 7572697 139619412 139620931 143987558 143989054 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 1647850 141268789 141271311 143989062 143991584 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -11518997 129752315 129754181 143991585 143993451 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 7538043 137296865 137297445 143998092 143998672 NC_060925.1 CM039034.1 96.56 True local misassembly 137297446 137299033 143998767 144000354 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -371358 136927676 136929908 144000355 144002592 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 9483096 127443329 127444118 144003843 144003054 NC_060925.1 CM039034.1 98.23 True indel: indel (<= 5bp) 127442823 127443327 144004348 144003844 NC_060925.1 CM039034.1 98.07 True local misassembly 127445725 127446359 144004983 144004349 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 12781213 140227573 140235952 144004984 144013220 NC_060925.1 CM039034.1 96.35 True relocation, inconsistency = 12781724 127444119 127445230 144014950 144013839 NC_060925.1 CM039034.1 98.47 True indel: indel (> 5bp) 127443329 127444118 144015756 144014967 NC_060925.1 CM039034.1 98.73 True indel: indel (<= 5bp) 127442655 127443327 144016429 144015757 NC_060925.1 CM039034.1 98.37 True local misassembly 127441319 127442264 144017375 144016430 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 9297013 136739278 136745899 144017376 144023969 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 3601549 140347459 140351303 144023980 144027824 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = 12901410 127444119 127445263 144029754 144028610 NC_060925.1 CM039034.1 98.52 True indel: indel (> 5bp) 127443329 127444118 144030560 144029771 NC_060925.1 CM039034.1 97.97 True indel: indel (<= 5bp) 127442655 127443327 144031233 144030561 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 14540078 141983657 141987888 144031485 144035667 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -5476179 136511731 136513243 144035689 144037201 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -4470270 132042974 132046714 144037202 144040916 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 1885697 133932821 133936302 144041326 144044808 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = 5665543 139610951 139612455 144053914 144055389 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = -4003562 135610082 135610773 144056578 144057269 NC_060925.1 CM039034.1 98.84 True local misassembly 135610958 135611586 144057587 144058215 NC_060925.1 CM039034.1 96.5 True relocation, inconsistency = -782139 134833969 134835823 144062737 144064565 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = 4913794 139755277 139756174 144070225 144071096 NC_060925.1 CM039034.1 95.21 True relocation, inconsistency = 414363 140172265 140173789 144072824 144074325 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -5343947 134829924 134834483 144074407 144079012 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -2553103 132281381 132284699 144079013 144082347 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 6207311 138492011 138493799 144082348 144084136 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -6230340 132263711 132267661 144084388 144088356 NC_060925.1 CM039034.1 96.98 True relocation, inconsistency = 13719 132281381 132284699 144088357 144091691 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 6207311 138492011 138493799 144091692 144093480 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -114247 138379747 138383104 144093675 144097032 NC_060925.1 CM039034.1 97.77 True fake: not a misassembly (possible transposable element) 132280907 132284699 144097227 144101036 NC_060925.1 CM039034.1 97.35 True fake: not a misassembly (possible transposable element) 138381316 138382991 144101037 144102712 NC_060925.1 CM039034.1 98.12 True fake: not a misassembly (possible transposable element) 138137820 138139445 144102713 144104361 NC_060925.1 CM039034.1 97.24 True fake: not a misassembly (possible transposable element) 138379758 138383321 144104362 144107925 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 107611 138490933 138493662 144107926 144110678 NC_060925.1 CM039034.1 97.21 True local misassembly 138491977 138494283 144110769 144113101 NC_060925.1 CM039034.1 97.46 True relocation, inconsistency = -5259082 133235202 133238967 144113102 144116867 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -3004843 130234125 130234666 144116868 144117409 NC_060925.1 CM039034.1 98.09 True local misassembly 130234667 130236998 144117602 144119933 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 2999096 133236095 133238192 144119934 144122031 NC_060925.1 CM039034.1 97.9 True local misassembly 133238398 133239227 144122073 144122902 NC_060925.1 CM039034.1 96.39 True indel: indel (<= 5bp) 133239228 133240284 144122904 144123960 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = 1589356 134829641 134833325 144123961 144127617 NC_060925.1 CM039034.1 97.8 True fake: not a misassembly (possible transposable element) 129943004 129944690 144127857 144129544 NC_060925.1 CM039034.1 96.59 True fake: not a misassembly (possible transposable element) 134829641 134833325 144129545 144133201 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -2357605 132475760 132476512 144133241 144133993 NC_060925.1 CM039034.1 97.47 True relocation, inconsistency = -2483900 129992613 129999641 144133994 144141022 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = 943389 130943031 130944871 144141023 144142864 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = 9242279 140187760 140189849 144143474 144145538 NC_060925.1 CM039034.1 95.79 True relocation, inconsistency = -10236330 129953606 129955916 144145625 144147935 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = -203684 129752327 129753785 144148030 144149465 NC_060925.1 CM039034.1 96.23 True relocation, inconsistency = 6772658 136526758 136527595 144149780 144150618 NC_060925.1 CM039034.1 98.23 True relocation, inconsistency = 1856202 138383798 138389282 144150619 144156056 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 10937446 127444119 127446339 144158289 144156069 NC_060925.1 CM039034.1 98.15 True indel: indel (> 5bp) 127443329 127444118 144159095 144158306 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 144159768 144159096 NC_060925.1 CM039034.1 97.33 True local misassembly 127441222 127442264 144160811 144159769 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = 4491332 131933597 131937151 144160812 144164340 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 10135607 142075161 142079020 144166743 144170617 NC_060925.1 CM039034.1 97.53 True relocation, inconsistency = -1850935 140228790 140234269 144171322 144176803 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -10191415 130042855 130043720 144176804 144177669 NC_060925.1 CM039034.1 97.97 True local misassembly 130044189 130045883 144177670 144179364 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 10473087 140521203 140522706 144181597 144183100 NC_060925.1 CM039034.1 98.14 True local misassembly 140523269 140524179 144183101 144184011 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = -4079176 136445004 136450394 144184012 144189403 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 8994790 127444119 127446941 144195498 144192676 NC_060925.1 CM039034.1 98.51 True local misassembly 127444119 127445894 144197274 144195499 NC_060925.1 CM039034.1 98.12 True indel: indel (> 5bp) 127443329 127444118 144198080 144197291 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 144198753 144198081 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 144199812 144198754 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 10160356 137603816 137606968 144201008 144204160 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -7316521 130290781 130293913 144204494 144207626 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 6010200 136304114 136309744 144207627 144213258 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -6336546 129973199 129975050 144213259 144215110 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 3210806 133185857 133186439 144215111 144215693 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -2895955 130290781 130293913 144215990 144219122 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = 6010200 136304114 136309744 144219123 144224754 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -6336546 129973199 129975050 144224755 144226606 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = 10254766 140230543 140231835 144227333 144228625 NC_060925.1 CM039034.1 98.3 True indel: indel (<= 5bp) 140231836 140235135 144228627 144231926 NC_060925.1 CM039034.1 98.52 True local misassembly 140235603 140237061 144231927 144233385 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -3930331 136310507 136315667 144237162 144242322 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 5679300 141994968 141997665 144242323 144245021 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = -2807134 139190532 139191526 144245022 144246017 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -2240786 136950768 136954495 144246045 144249772 NC_060925.1 CM039034.1 98.71 True local misassembly 136954964 136956729 144249773 144251538 NC_060925.1 CM039034.1 98.36 True relocation, inconsistency = -6666071 130290781 130293966 144251661 144254846 NC_060925.1 CM039034.1 97.87 True local misassembly 130294435 130295956 144254847 144256368 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = 6004500 136304114 136309359 144260026 144265272 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = 5686998 141996358 141997295 144265273 144266210 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -2807134 139190162 139191526 144266211 144267576 NC_060925.1 CM039034.1 98.9 True relocation, inconsistency = -2240786 136950768 136954548 144267604 144271383 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 2325038 139282829 139284467 144274626 144276264 NC_060925.1 CM039034.1 98.6 True local misassembly 139284468 139285806 144276704 144278042 NC_060925.1 CM039034.1 99.03 True relocation, inconsistency = -562944 138731422 138733197 144286602 144288377 NC_060925.1 CM039034.1 98.2 True local misassembly 138733198 138734536 144288817 144290155 NC_060925.1 CM039034.1 99.25 True relocation, inconsistency = 1934965 140673130 140674833 144293784 144295458 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = 13227084 127442655 127443156 144298849 144298348 NC_060925.1 CM039034.1 98.8 True local misassembly 127441225 127442264 144299889 144298850 NC_060925.1 CM039034.1 98.46 True relocation, inconsistency = 13535250 140978729 140983337 144301104 144305692 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 660068 141643662 141644763 144305949 144307050 NC_060925.1 CM039034.1 97.82 True indel: indel (<= 5bp) 141644764 141645424 144307054 144307714 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -7054436 134595836 134598799 144312562 144315525 NC_060925.1 CM039034.1 97.67 True local misassembly 134599268 134600630 144315526 144316888 NC_060925.1 CM039034.1 98.83 True relocation, inconsistency = 7152193 127445634 127446941 144318329 144317022 NC_060925.1 CM039034.1 97.63 True indel: indel (> 5bp) 127444119 127445610 144319821 144318330 NC_060925.1 CM039034.1 98.19 True indel: indel (> 5bp) 127443362 127444118 144320594 144319838 NC_060925.1 CM039034.1 98.15 True indel: indel (> 5bp) 127442655 127443327 144321290 144320618 NC_060925.1 CM039034.1 98.51 True local misassembly 127441222 127442264 144322333 144321291 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 4491332 131933597 131937151 144322334 144325862 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 8292130 140229550 140236091 144326131 144332675 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -7730865 132505334 132508732 144332783 144336181 NC_060925.1 CM039034.1 98.44 True relocation, inconsistency = 5588502 138102835 138108267 144341782 144347246 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 1569137 139677999 139679701 144347841 144349543 NC_060925.1 CM039034.1 97.65 True local misassembly 139680551 139681808 144349941 144351198 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = 547836 140230266 140235386 144351820 144356957 NC_060925.1 CM039034.1 98.01 True relocation, inconsistency = -7296211 132939176 132940249 144356958 144358030 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 4797099 137737349 137742810 144358031 144363524 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 4420990 142164039 142164757 144363763 144364481 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 14721224 127441336 127442264 144365960 144365032 NC_060925.1 CM039034.1 98.56 True relocation, inconsistency = 14568522 142010787 142013105 144365961 144368279 NC_060925.1 CM039034.1 98.32 True indel: indel (<= 5bp) 142013106 142014605 144368281 144369780 NC_060925.1 CM039034.1 97.8 True local misassembly 142015074 142016051 144369781 144370758 NC_060925.1 CM039034.1 98.67 True relocation, inconsistency = -1897653 140118857 140119817 144371217 144372177 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = -13227 140106591 140108708 144372178 144374288 NC_060925.1 CM039034.1 95.37 True relocation, inconsistency = -4440821 135667888 135668625 144374289 144375026 NC_060925.1 CM039034.1 98.74 True local misassembly 135668626 135669254 144375183 144375811 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 4402615 140072199 140073861 144376141 144377804 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 461465 140535327 140535927 144377805 144378405 NC_060925.1 CM039034.1 97.64 True indel: indel (> 5bp) 140535951 140539099 144378406 144381554 NC_060925.1 CM039034.1 97.97 True indel: indel (> 5bp) 140539477 140540097 144381910 144382530 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = -6825850 133714281 133715692 144382564 144383975 NC_060925.1 CM039034.1 98.51 True local misassembly 133716161 133717487 144383976 144385302 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = -3975682 129744526 129745776 144388023 144389273 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = -74574 129671206 129671896 144389277 144389967 NC_060925.1 CM039034.1 97.4 True indel: indel (<= 5bp) 129671898 129673317 144389968 144391387 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 71022 129744526 129745776 144391574 144392824 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 11231946 140978455 140981119 144393557 144396220 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = -7779849 133202152 133204328 144397102 144399278 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = 1625132 134829461 134834483 144399279 144404320 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -1152137 133682347 133686374 144404321 144408344 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = 6438257 140124802 140125732 144408515 144409445 NC_060925.1 CM039034.1 98.82 True indel: indel (<= 5bp) 140125734 140127178 144409446 144410890 NC_060925.1 CM039034.1 98.82 True relocation, inconsistency = -6448439 133679720 133681764 144411871 144413915 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -447435 133234330 133240224 144413916 144419773 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = 4051621 137292574 137296588 144420502 144424592 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -2430543 134868279 134871758 144426826 144430305 NC_060925.1 CM039034.1 98.19 True local misassembly 134872227 134873601 144430306 144431680 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 2419031 137292633 137296588 144431681 144435712 NC_060925.1 CM039034.1 96.25 True relocation, inconsistency = 9844105 127444119 127446553 144440121 144437687 NC_060925.1 CM039034.1 98.44 True indel: indel (> 5bp) 127443406 127444118 144440850 144440138 NC_060925.1 CM039034.1 98.35 True local misassembly 127444119 127446941 144443673 144440851 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 127443406 127444118 144444402 144443690 NC_060925.1 CM039034.1 98.35 True local misassembly 127444119 127446941 144447225 144444403 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 127443329 127444118 144448031 144447242 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 144448704 144448032 NC_060925.1 CM039034.1 97.47 True local misassembly 127441284 127442264 144449685 144448705 NC_060925.1 CM039034.1 98.27 True local misassembly 127444432 127446357 144452340 144450415 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 7420693 134867051 134873437 144452341 144458655 NC_060925.1 CM039034.1 96.62 True relocation, inconsistency = 4228757 139102195 139104655 144458656 144461142 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -8700270 130405796 130406418 144462553 144463175 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -654297 129752327 129754716 144463381 144465770 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 10858084 140612801 140613731 144465771 144466701 NC_060925.1 CM039034.1 97.32 True relocation, inconsistency = -424528 140189204 140189736 144466702 144467235 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 12742650 127444119 127446553 144469670 144467236 NC_060925.1 CM039034.1 98.36 True local misassembly 127444119 127445894 144471446 144469671 NC_060925.1 CM039034.1 98.25 True indel: indel (> 5bp) 127443329 127444118 144472252 144471463 NC_060925.1 CM039034.1 98.73 True indel: indel (<= 5bp) 127442655 127443327 144472925 144472253 NC_060925.1 CM039034.1 98.81 True local misassembly 127441222 127442264 144473968 144472926 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 4491332 131933597 131937151 144473969 144477497 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -997711 130940143 130945519 144478200 144483577 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 6170720 137116240 137119491 144483578 144486829 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 1149617 138274990 138276659 144492711 144494354 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = -2123516 136153144 136157704 144494355 144498889 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 3915983 140074450 140075507 144499652 144500709 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = -9667991 130407517 130409576 144500710 144502779 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 4672589 135082166 135084314 144502780 144504961 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -3735118 131349197 131355851 144504962 144511595 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = 6270825 137626677 137629277 144511596 144514200 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 10180436 127444711 127446240 144515730 144514201 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 9756555 137202823 137203889 144515758 144516824 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 3865023 141068913 141075544 144516825 144523290 NC_060925.1 CM039034.1 95.09 True relocation, inconsistency = -4328791 136746754 136748026 144523291 144524586 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -6453270 130294757 130295403 144524587 144525233 NC_060925.1 CM039034.1 98.14 True indel: indel (> 5bp) 130295430 130297681 144525234 144527485 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 9913281 140210963 140223094 144527486 144539620 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 1843456 142067489 142068014 144540559 144541084 NC_060925.1 CM039034.1 97.34 True indel: indel (> 5bp) 142068392 142070843 144541440 144543891 NC_060925.1 CM039034.1 97.96 True local misassembly 142071312 142072056 144543892 144544636 NC_060925.1 CM039034.1 99.46 True indel: indel (<= 5bp) 142072057 142073239 144544638 144545820 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = -11782459 130290781 130293966 144545821 144549006 NC_060925.1 CM039034.1 97.8 True local misassembly 130294435 130295956 144549007 144550528 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = 4523634 134833015 134837511 144563953 144568475 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -3083987 131757716 131758824 144572667 144573775 NC_060925.1 CM039034.1 98.02 True indel: indel (> 5bp) 131758851 131759473 144573776 144574398 NC_060925.1 CM039034.1 96.63 True local misassembly 131759474 131760666 144574867 144576059 NC_060925.1 CM039034.1 98.06 True relocation, inconsistency = 9802069 141562736 141564387 144576060 144577714 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 107903 141672484 141675659 144577908 144581083 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 14227168 127444119 127445315 144582280 144581084 NC_060925.1 CM039034.1 98.3 True indel: indel (> 5bp) 127443329 127444118 144583086 144582297 NC_060925.1 CM039034.1 97.85 True indel: indel (<= 5bp) 127442655 127443327 144583759 144583087 NC_060925.1 CM039034.1 98.07 True local misassembly 127441708 127442264 144584316 144583760 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 2896048 130339125 130341127 144585129 144587105 NC_060925.1 CM039034.1 96.7 True relocation, inconsistency = -92074 130249480 130255228 144587532 144593228 NC_060925.1 CM039034.1 97.29 True relocation, inconsistency = 11569217 141826692 141830393 144595475 144599177 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -11539396 130290998 130293966 144599178 144602146 NC_060925.1 CM039034.1 98.02 True local misassembly 130294435 130296076 144602147 144603788 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = 9315012 139618587 139621290 144611287 144613990 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -3319793 136302403 136307583 144614896 144620092 NC_060925.1 CM039034.1 98.13 True relocation, inconsistency = -4053561 132254023 132255492 144620093 144621562 NC_060925.1 CM039034.1 97.96 True relocation, inconsistency = 4811021 127441206 127442264 144623358 144622300 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 12768612 140210963 140213777 144623445 144626259 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -7030597 133183181 133188011 144626260 144631091 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -3241388 129950196 129951830 144634664 144636298 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 12204896 142173371 142174391 144652943 144653963 NC_060925.1 CM039034.1 96.47 True relocation, inconsistency = -10057835 132117546 132119567 144654953 144656977 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 10013208 142134738 142137157 144658940 144661359 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -11732768 130404390 130405408 144661360 144662378 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = -377787 130028126 130029274 144662883 144664031 NC_060925.1 CM039034.1 98.61 True indel: indel (> 5bp) 130029541 130031395 144664249 144666103 NC_060925.1 CM039034.1 97.79 True local misassembly 130031601 130032430 144666145 144666974 NC_060925.1 CM039034.1 97.47 True indel: indel (<= 5bp) 130032431 130033624 144666976 144668169 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 3620918 133654772 133655300 144668399 144668927 NC_060925.1 CM039034.1 98.3 True indel: indel (> 5bp) 133655480 133658161 144669128 144671809 NC_060925.1 CM039034.1 98.4 True indel: indel (<= 5bp) 133658165 133659155 144671810 144672800 NC_060925.1 CM039034.1 96.97 True local misassembly 133659624 133660585 144672801 144673762 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = -3664684 129996253 129996854 144674114 144674715 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 10659708 140658441 140660860 144676594 144679013 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -7379560 133281301 133282297 144679014 144680010 NC_060925.1 CM039034.1 98.83 True local misassembly 133282298 133285358 144680251 144683311 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = -257292 133028067 133029255 144683312 144684500 NC_060925.1 CM039034.1 99.16 True relocation, inconsistency = 2131268 135160571 135161736 144684548 144685713 NC_060925.1 CM039034.1 99.23 True local misassembly 135162348 135163513 144686324 144687489 NC_060925.1 CM039034.1 99.23 True local misassembly 135164159 135166149 144688135 144690125 NC_060925.1 CM039034.1 99.35 True relocation, inconsistency = 5368150 140537691 140540343 144693517 144696147 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = -7597506 132942838 132947583 144696148 144700929 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 6666870 139616927 139618431 144703403 144704878 NC_060925.1 CM039034.1 96.01 True relocation, inconsistency = 12171946 127441206 127442264 144708653 144707595 NC_060925.1 CM039034.1 98.87 True local misassembly 127441319 127442264 144711227 144710282 NC_060925.1 CM039034.1 98.87 True local misassembly 127442681 127444777 144713339 144711228 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 11363109 138808019 138813927 144713472 144719380 NC_060925.1 CM039034.1 98.88 True relocation, inconsistency = -3842934 134983227 134984392 144731614 144732779 NC_060925.1 CM039034.1 99.14 True local misassembly 134985003 134986168 144733390 144734555 NC_060925.1 CM039034.1 99.31 True local misassembly 134986814 134987331 144735201 144735718 NC_060925.1 CM039034.1 99.23 True indel: indel (> 5bp) 134987332 134988781 144735742 144737191 NC_060925.1 CM039034.1 99.38 True relocation, inconsistency = 201875 135193853 135198852 144740388 144745410 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 4788841 139987825 139990320 144745542 144748037 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = -6168103 133822218 133827114 144748038 144752934 NC_060925.1 CM039034.1 98.94 True relocation, inconsistency = 1332974 135160571 135161736 144753417 144754582 NC_060925.1 CM039034.1 99.14 True local misassembly 135162348 135163513 144755193 144756358 NC_060925.1 CM039034.1 99.23 True local misassembly 135164159 135165289 144757004 144758134 NC_060925.1 CM039034.1 99.56 True local misassembly 135165903 135167925 144758748 144760770 NC_060925.1 CM039034.1 99.06 True relocation, inconsistency = 438137 135610082 135610957 144764790 144765665 NC_060925.1 CM039034.1 98.52 True local misassembly 135610958 135611586 144765822 144766450 NC_060925.1 CM039034.1 96.34 True relocation, inconsistency = 6549479 142164039 142164705 144769424 144770090 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = 14718486 127441206 127442264 144774437 144773379 NC_060925.1 CM039034.1 98.87 True local misassembly 127441241 127442264 144777089 144776066 NC_060925.1 CM039034.1 98.77 True relocation, inconsistency = 12772128 140214393 140224802 144777090 144787501 NC_060925.1 CM039034.1 98.22 True relocation, inconsistency = -6942502 133282301 133285358 144787502 144790559 NC_060925.1 CM039034.1 98.79 True relocation, inconsistency = 5513325 138808795 138811791 144800671 144803667 NC_060925.1 CM039034.1 99.13 True local misassembly 138811792 138813477 144804136 144805821 NC_060925.1 CM039034.1 99.29 True relocation, inconsistency = -4991414 133822209 133824032 144805967 144807790 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = -3990998 129833035 129838387 144807791 144813142 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 8651682 138492698 138493654 144815771 144816727 NC_060925.1 CM039034.1 97.6 True local misassembly 138494206 138494792 144816838 144817424 NC_060925.1 CM039034.1 98.13 True indel: indel (<= 5bp) 138494793 138495492 144817426 144818125 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -8399 138492698 138493654 144823730 144824686 NC_060925.1 CM039034.1 97.49 True local misassembly 138494206 138494792 144824797 144825383 NC_060925.1 CM039034.1 98.13 True indel: indel (<= 5bp) 138494793 138495492 144825385 144826084 NC_060925.1 CM039034.1 97.86 True local misassembly 138492698 138493654 144829472 144830428 NC_060925.1 CM039034.1 97.6 True local misassembly 138494206 138494792 144830539 144831125 NC_060925.1 CM039034.1 98.13 True indel: indel (<= 5bp) 138494793 138495492 144831127 144831826 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -3415012 135081239 135083344 144832585 144834638 NC_060925.1 CM039034.1 96.11 True relocation, inconsistency = -7005 135081064 135081651 144839363 144839950 NC_060925.1 CM039034.1 97.79 True local misassembly 135081997 135083344 144840143 144841490 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 5042187 140126688 140129116 144842647 144845051 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = -4320100 135811756 135813876 144847791 144849884 NC_060925.1 CM039034.1 96.37 True relocation, inconsistency = 2675322 138492698 138493654 144853384 144854340 NC_060925.1 CM039034.1 97.49 True local misassembly 138494206 138494792 144854451 144855037 NC_060925.1 CM039034.1 97.96 True indel: indel (<= 5bp) 138494793 138495492 144855039 144855738 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -3415012 135081239 135083344 144856497 144858550 NC_060925.1 CM039034.1 96.06 True relocation, inconsistency = 1090348 136180416 136182090 144865274 144866943 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 2684962 138868873 138871687 144868764 144871577 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -381435 138492698 138493654 144874023 144874979 NC_060925.1 CM039034.1 97.49 True local misassembly 138494206 138494792 144875090 144875676 NC_060925.1 CM039034.1 97.79 True indel: indel (<= 5bp) 138494793 138495492 144875678 144876377 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -3415012 135081239 135083344 144877136 144879189 NC_060925.1 CM039034.1 96.06 True relocation, inconsistency = 3775315 138868873 138871687 144889403 144892216 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = 709246 139580934 139581538 144892217 144892821 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = -4500122 135081962 135083379 144893367 144894784 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = 5042408 140126322 140126868 144895319 144895865 NC_060925.1 CM039034.1 98.54 True local misassembly 140127786 140128480 144896288 144896982 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = -9730545 130398160 130399606 144897207 144898653 NC_060925.1 CM039034.1 98.27 True relocation, inconsistency = 541338 130940988 130944863 144898697 144902647 NC_060925.1 CM039034.1 96.0 True relocation, inconsistency = -1185185 129759679 129760346 144902648 144903315 NC_060925.1 CM039034.1 97.23 True relocation, inconsistency = 10917104 140677451 140680700 144903316 144906590 NC_060925.1 CM039034.1 95.34 True relocation, inconsistency = 1172385 141854536 141858117 144908041 144911621 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -4274890 137583812 137584834 144912206 144913228 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = -3036421 134548523 134549877 144913338 144914692 NC_060925.1 CM039034.1 98.6 True local misassembly 134550142 134552019 144914693 144916570 NC_060925.1 CM039034.1 99.2 True relocation, inconsistency = -3518724 131035647 131036381 144918922 144919656 NC_060925.1 CM039034.1 98.37 True local misassembly 131036850 131038222 144919657 144921029 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -1156612 129881974 129887614 144921393 144927032 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 4943741 134831415 134832765 144927092 144928442 NC_060925.1 CM039034.1 99.33 True local misassembly 134831415 134832765 144931226 144932576 NC_060925.1 CM039034.1 99.19 True relocation, inconsistency = -2565982 132267353 132270802 144933146 144936594 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = 7013 132278754 132279596 144937533 144938375 NC_060925.1 CM039034.1 99.41 True relocation, inconsistency = 8296978 140580524 140586358 144942325 144948133 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = -3456825 137129534 137130283 144948134 144948883 NC_060925.1 CM039034.1 98.95 True indel: indel (> 5bp) 137130687 137131616 144949312 144950241 NC_060925.1 CM039034.1 98.28 True indel: indel (> 5bp) 137131643 137132509 144950242 144951108 NC_060925.1 CM039034.1 97.23 True indel: indel (> 5bp) 137132510 137133040 144951184 144951714 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 2485297 139618587 139622282 144951964 144955656 NC_060925.1 CM039034.1 96.83 True relocation, inconsistency = -8681642 130940641 130941682 144955657 144956698 NC_060925.1 CM039034.1 97.62 True indel: indel (> 5bp) 130941709 130942575 144956699 144957565 NC_060925.1 CM039034.1 97.69 True indel: indel (> 5bp) 130942576 130943106 144957641 144958171 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 3496724 127444119 127445263 144959904 144958760 NC_060925.1 CM039034.1 98.52 True indel: indel (> 5bp) 127443329 127444118 144960710 144959921 NC_060925.1 CM039034.1 98.1 True indel: indel (<= 5bp) 127442655 127443327 144961383 144960711 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 144962442 144961384 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 14660944 142103394 142104983 144962628 144964192 NC_060925.1 CM039034.1 96.48 True relocation, inconsistency = -5499861 136605522 136606768 144964592 144965838 NC_060925.1 CM039034.1 98.48 True local misassembly 136607237 136609444 144965839 144968046 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 95330 136705477 136710576 144968749 144973844 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 419440 137130284 137131616 144974112 144975444 NC_060925.1 CM039034.1 98.65 True indel: indel (> 5bp) 137131643 137132509 144975445 144976311 NC_060925.1 CM039034.1 97.12 True indel: indel (> 5bp) 137132510 137133040 144976387 144976917 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 9686658 127444119 127445263 144978650 144977506 NC_060925.1 CM039034.1 98.43 True indel: indel (> 5bp) 127443329 127444118 144979456 144978667 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 144980129 144979457 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 14540078 141983657 141987888 144980381 144984563 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -8700681 133287419 133291689 144984775 144989033 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 8005837 141297527 141298381 144989034 144989865 NC_060925.1 CM039034.1 97.12 True relocation, inconsistency = -8326844 132971764 132973071 144990092 144991399 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = -930098 132042974 132046714 144991400 144995114 NC_060925.1 CM039034.1 96.87 True relocation, inconsistency = 10134061 142182034 142182544 144996373 144996883 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -1506309 140678195 140679892 144998843 145000540 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -4316859 136363374 136365731 145000881 145003212 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -1531926 134834319 134837599 145003726 145007006 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -2706343 132142139 132143968 145017889 145019718 NC_060925.1 CM039034.1 97.7 True relocation, inconsistency = 4697054 127444119 127444881 145020684 145019922 NC_060925.1 CM039034.1 98.82 True indel: indel (> 5bp) 127443329 127444118 145021490 145020701 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 145022163 145021491 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 145023222 145022164 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 12229260 139673036 139674594 145024734 145026266 NC_060925.1 CM039034.1 96.73 True relocation, inconsistency = -4594841 135080901 135083366 145027414 145029879 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 3300793 138384160 138385207 145029880 145030927 NC_060925.1 CM039034.1 98.23 True indel: indel (<= 5bp) 138385208 138386982 145030929 145032703 NC_060925.1 CM039034.1 97.97 True indel: indel (<= 5bp) 138386983 138387692 145032705 145033414 NC_060925.1 CM039034.1 98.59 True relocation, inconsistency = 10940349 127444119 127446246 145035929 145033802 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 127443329 127444118 145036735 145035946 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 145037408 145036736 NC_060925.1 CM039034.1 98.07 True local misassembly 127441206 127442264 145038467 145037409 NC_060925.1 CM039034.1 98.11 True local misassembly 127442655 127443327 145039184 145038512 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 145040243 145039185 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 8861979 136304279 136307558 145040279 145043533 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -1472945 134835745 134840708 145044665 145049628 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 2758098 137599240 137600578 145050062 145051400 NC_060925.1 CM039034.1 98.81 True local misassembly 137601284 137602333 145051748 145052797 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -1999129 135603205 135605044 145052798 145054637 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 8158052 127444119 127444881 145055671 145054909 NC_060925.1 CM039034.1 98.82 True indel: indel (> 5bp) 127443329 127444118 145056477 145055688 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 145057150 145056478 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 145058209 145057151 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 21615 127418936 127419590 145058864 145058210 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 12239568 139660014 139661531 145059720 145061211 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = -4581819 135080901 135083054 145062400 145064553 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = -4137894 130945161 130948294 145064554 145067785 NC_060925.1 CM039034.1 95.33 True relocation, inconsistency = -609415 130338880 130339773 145067786 145068679 NC_060925.1 CM039034.1 97.7 True local misassembly 130339921 130341263 145068680 145070022 NC_060925.1 CM039034.1 98.06 True indel: indel (<= 5bp) 130341264 130343792 145070024 145072552 NC_060925.1 CM039034.1 97.51 True local misassembly 130343940 130345282 145072553 145073895 NC_060925.1 CM039034.1 98.06 True indel: indel (<= 5bp) 130345283 130347057 145073897 145075671 NC_060925.1 CM039034.1 97.8 True indel: indel (<= 5bp) 130347058 130349243 145075673 145077858 NC_060925.1 CM039034.1 97.67 True local misassembly 130349712 130350990 145077859 145079137 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = 5953288 136304279 136307558 145079138 145082392 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -1227559 135080901 135083366 145083294 145085759 NC_060925.1 CM039034.1 98.01 True indel: indel (> 5bp) 135083367 135083991 145085770 145086394 NC_060925.1 CM039034.1 98.56 True indel: indel (> 5bp) 135083992 135084728 145086418 145087154 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = 5038127 140122908 140126595 145087207 145090894 NC_060925.1 CM039034.1 98.05 True relocation, inconsistency = 86623 140214329 140218855 145092005 145096483 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -10326570 129892286 129893138 145096484 145097336 NC_060925.1 CM039034.1 97.08 True relocation, inconsistency = 740670 130636731 130641600 145100259 145105108 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = -970230 129671541 129672966 145105279 145106704 NC_060925.1 CM039034.1 97.83 True local misassembly 129671518 129675848 145107498 145111855 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 2605333 132281182 132284699 145111856 145115389 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = 4110301 136395325 136397951 145115714 145118340 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = 1739344 138137716 138141816 145118761 145122887 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = -8146599 129995218 129997334 145122888 145125004 NC_060925.1 CM039034.1 96.89 True relocation, inconsistency = 3655287 133653265 133659331 145125648 145131708 NC_060925.1 CM039034.1 98.14 True relocation, inconsistency = -3425207 130234125 130234698 145131709 145132282 NC_060925.1 CM039034.1 98.48 True relocation, inconsistency = 4594007 134829227 134833325 145132804 145136874 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = -4890561 129943004 129946222 145137114 145140307 NC_060925.1 CM039034.1 96.46 True relocation, inconsistency = 4883174 134829641 134833325 145140552 145144208 NC_060925.1 CM039034.1 97.8 True fake: not a misassembly (possible transposable element) 132475760 132476589 145144248 145145077 NC_060925.1 CM039034.1 97.59 True fake: not a misassembly (possible transposable element) 134828158 134834503 145145121 145151484 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = -1168965 133666513 133668546 145152459 145154491 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 5881317 139551353 139553016 145155981 145157654 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 653994 140207011 140210530 145157655 145161174 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = -10187817 130022714 130024981 145161175 145163442 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 2570203 127450684 127452408 145165294 145163545 NC_060925.1 CM039034.1 95.98 True relocation, inconsistency = 7629757 135082166 135086000 145165295 145169163 NC_060925.1 CM039034.1 97.8 True relocation, inconsistency = 4679107 139765108 139767109 145169164 145171164 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = -8961679 130805531 130806627 145171265 145172361 NC_060925.1 CM039034.1 98.72 True local misassembly 130806628 130808310 145172661 145174343 NC_060925.1 CM039034.1 99.05 True relocation, inconsistency = 9335906 140145447 140148664 145175574 145178791 NC_060925.1 CM039034.1 98.32 True relocation, inconsistency = -990007 139158968 139160656 145179102 145180790 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 11712609 127444119 127446358 145183030 145180791 NC_060925.1 CM039034.1 98.57 True indel: indel (> 5bp) 127443329 127444118 145183836 145183047 NC_060925.1 CM039034.1 98.35 True relocation, inconsistency = 2897067 130341264 130345048 145183915 145187699 NC_060925.1 CM039034.1 97.81 True local misassembly 130343273 130353232 145187700 145197662 NC_060925.1 CM039034.1 97.92 True local misassembly 130347438 130349243 145197663 145199468 NC_060925.1 CM039034.1 97.53 True local misassembly 130349712 130350985 145199469 145200742 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -392038 129958948 129960398 145200743 145202194 NC_060925.1 CM039034.1 97.89 True relocation, inconsistency = 379142 130339541 130349328 145202195 145211985 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 5725358 136074687 136075715 145211986 145213014 NC_060925.1 CM039034.1 98.35 True local misassembly 136076184 136077642 145213015 145214473 NC_060925.1 CM039034.1 98.63 True relocation, inconsistency = -5788443 130290809 130291696 145216083 145216970 NC_060925.1 CM039034.1 97.64 True local misassembly 130291792 130293966 145216971 145219145 NC_060925.1 CM039034.1 97.84 True local misassembly 130294613 130295803 145219329 145220519 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 637739 130940652 130941682 145227629 145228659 NC_060925.1 CM039034.1 98.06 True indel: indel (> 5bp) 130941709 130942575 145228660 145229526 NC_060925.1 CM039034.1 97.35 True indel: indel (> 5bp) 130942576 130943543 145229602 145230569 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = 3890263 134833986 134835823 145230749 145232586 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 4340869 139182728 139184773 145238622 145240665 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = -3714034 135470750 135472047 145240676 145242012 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -2288867 133183181 133188011 145242013 145246844 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = 8808346 141996358 141997286 145246845 145247773 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = -8348969 133648318 133649891 145247774 145249347 NC_060925.1 CM039034.1 98.09 True relocation, inconsistency = -3900218 129758740 129762101 145258414 145261775 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = 3892689 133654791 133655300 145261776 145262285 NC_060925.1 CM039034.1 97.89 True indel: indel (> 5bp) 133655480 133656298 145262486 145263304 NC_060925.1 CM039034.1 97.44 True indel: indel (> 5bp) 133656322 133658952 145263305 145265935 NC_060925.1 CM039034.1 97.49 True local misassembly 133659421 133661107 145265936 145267622 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 5881118 139551292 139552750 145276689 145278157 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -9494525 130058226 130063407 145278158 145283362 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = 943205 131010287 131012411 145287037 145289158 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = -409288 130604215 130610644 145290250 145296557 NC_060925.1 CM039034.1 95.68 True relocation, inconsistency = 10047884 140658701 140663127 145296730 145301110 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -536695 140126433 140127331 145301111 145302009 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -479240 139649185 139650296 145303103 145304214 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -9270275 130382749 130383637 145306942 145307829 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = 555962 130939600 130943543 145307830 145311822 NC_060925.1 CM039034.1 95.3 True relocation, inconsistency = 9977494 140922216 140922926 145313001 145313711 NC_060925.1 CM039034.1 96.91 True indel: indel (> 5bp) 140922927 140923497 145313787 145314357 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -4450394 136473500 136474865 145314754 145316096 NC_060925.1 CM039034.1 96.12 True relocation, inconsistency = -6524607 129950456 129951843 145316294 145317681 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = 2500735 127446942 127447471 145320460 145319931 NC_060925.1 CM039034.1 97.92 True indel: indel (<= 5bp) 127444119 127446941 145323284 145320462 NC_060925.1 CM039034.1 98.37 True indel: indel (> 5bp) 127443329 127444118 145324090 145323301 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 145324763 145324091 NC_060925.1 CM039034.1 98.22 True local misassembly 127441746 127442264 145325282 145324764 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 14560445 142002710 142006374 145325283 145328947 NC_060925.1 CM039034.1 98.12 True indel: indel (<= 5bp) 142006375 142007667 145328949 145330241 NC_060925.1 CM039034.1 98.14 True local misassembly 142008136 142009468 145330242 145331574 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = -4879012 137130457 137131551 145331575 145332669 NC_060925.1 CM039034.1 98.88 True indel: indel (> 5bp) 137131643 137132509 145332734 145333600 NC_060925.1 CM039034.1 97.0 True indel: indel (> 5bp) 137132510 137133319 145333676 145334485 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -2636031 134497289 134498606 145334486 145335803 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 1251828 135753789 135755217 145339158 145340586 NC_060925.1 CM039034.1 97.69 True indel: indel (<= 5bp) 135755218 135756022 145340588 145341392 NC_060925.1 CM039034.1 98.51 True local misassembly 135756491 135757434 145341393 145342336 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1372457 137130284 137131551 145342729 145343996 NC_060925.1 CM039034.1 98.74 True indel: indel (> 5bp) 137131643 137132509 145344061 145344927 NC_060925.1 CM039034.1 97.0 True indel: indel (> 5bp) 137132510 137133319 145345003 145345812 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -2636031 134497289 134498606 145345813 145347130 NC_060925.1 CM039034.1 98.25 True relocation, inconsistency = 4679258 139182728 139186075 145351994 145355344 NC_060925.1 CM039034.1 98.69 True relocation, inconsistency = -12390 139173686 139175266 145355345 145356925 NC_060925.1 CM039034.1 98.81 True local misassembly 139175665 139176348 145357766 145358449 NC_060925.1 CM039034.1 99.12 True relocation, inconsistency = -5577285 133599083 133603913 145358469 145363300 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 7702937 141306851 141307779 145363301 145364229 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -9062547 132245233 132246894 145364230 145365891 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = 122615 132373184 132375308 145369566 145371687 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 9796039 142173371 142174072 145373711 145374412 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = 14726817 127444119 127446553 145376847 145374413 NC_060925.1 CM039034.1 98.48 True indel: indel (> 5bp) 127443329 127444118 145377653 145376864 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 145378326 145377654 NC_060925.1 CM039034.1 98.66 True local misassembly 127441333 127442264 145379258 145378327 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 14692733 142134998 142139424 145379259 145383639 NC_060925.1 CM039034.1 96.93 True relocation, inconsistency = -2012992 140126433 140127331 145383640 145384538 NC_060925.1 CM039034.1 96.91 True relocation, inconsistency = -479240 139649185 139650296 145385632 145386743 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -9285788 130367550 130368123 145389785 145390358 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 571476 130939600 130943543 145390359 145394351 NC_060925.1 CM039034.1 95.3 True relocation, inconsistency = 10635397 141580119 141580829 145395530 145396240 NC_060925.1 CM039034.1 96.77 True indel: indel (> 5bp) 141580830 141581400 145396316 145396886 NC_060925.1 CM039034.1 97.72 True indel: indel (> 5bp) 141581424 141581967 145396887 145397430 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = -6747649 134834319 134836777 145397431 145399889 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -1724804 133114296 133116017 145402212 145403934 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = -2084658 131035034 131037158 145407609 145409730 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = 3592314 127441206 127442264 145411244 145410186 NC_060925.1 CM039034.1 98.77 True local misassembly 127441389 127442264 145413748 145412873 NC_060925.1 CM039034.1 98.68 True relocation, inconsistency = 8860020 136302285 136309359 145413749 145420824 NC_060925.1 CM039034.1 98.37 True relocation, inconsistency = 237692 136547052 136547910 145420825 145421683 NC_060925.1 CM039034.1 97.97 True indel: indel (> 5bp) 136547937 136548791 145421684 145422538 NC_060925.1 CM039034.1 97.43 True local misassembly 136548792 136549903 145422980 145424091 NC_060925.1 CM039034.1 97.39 True indel: indel (<= 5bp) 136549905 136550701 145424092 145424888 NC_060925.1 CM039034.1 96.32 True relocation, inconsistency = 4526249 141076951 141082645 145424889 145430586 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -4535594 136547052 136547910 145430587 145431445 NC_060925.1 CM039034.1 97.88 True indel: indel (> 5bp) 136547937 136548791 145431446 145432300 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 5091671 141640764 141645646 145432602 145437463 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = -665018 140980629 140981197 145437464 145438032 NC_060925.1 CM039034.1 97.07 True relocation, inconsistency = -8534710 132446518 132447133 145438063 145438678 NC_060925.1 CM039034.1 98.54 True relocation, inconsistency = 792090 133239260 133240718 145438715 145440147 NC_060925.1 CM039034.1 96.64 True relocation, inconsistency = 1646125 134887313 134888937 145440617 145442241 NC_060925.1 CM039034.1 97.78 True local misassembly 134889229 134890426 145442360 145443557 NC_060925.1 CM039034.1 96.74 True relocation, inconsistency = 6087693 140978261 140981197 145443699 145446612 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = -4577707 136403521 136404136 145446643 145447258 NC_060925.1 CM039034.1 98.7 True relocation, inconsistency = 3183668 139587828 139591874 145447282 145451302 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -9537343 130055024 130055639 145451795 145452410 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 3603948 133659624 133661082 145452447 145453879 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = 2884734 136546876 136547910 145454939 145455973 NC_060925.1 CM039034.1 98.45 True indel: indel (> 5bp) 136547937 136549206 145455974 145457243 NC_060925.1 CM039034.1 97.09 True local misassembly 136549207 136550151 145457712 145458656 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -6877088 129673318 129674322 145458911 145459915 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 259508 129933831 129937986 145459916 145464044 NC_060925.1 CM039034.1 97.28 True relocation, inconsistency = 11019222 140957355 140958885 145464191 145465732 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = -948796 140010090 140011366 145465733 145467009 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -10264153 129749367 129754181 145469163 145473994 NC_060925.1 CM039034.1 97.46 True local misassembly 129749367 129754617 145474949 145480216 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 8014174 137768792 137770493 145480217 145481918 NC_060925.1 CM039034.1 98.08 True relocation, inconsistency = 4259697 142030191 142032030 145481919 145483758 NC_060925.1 CM039034.1 96.85 True relocation, inconsistency = -5485019 136547012 136548032 145483759 145484779 NC_060925.1 CM039034.1 98.15 True indel: stretch of mismatches 136548291 136549256 145485038 145486003 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -2038461 134510846 134512584 145486054 145487792 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 3623443 138137716 138140903 145489481 145492668 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = -8391061 129749843 129755646 145492669 145498520 NC_060925.1 CM039034.1 96.75 True relocation, inconsistency = 3890934 133647121 133650451 145499061 145502365 NC_060925.1 CM039034.1 97.15 True relocation, inconsistency = 4484155 138136840 138141000 145504599 145508737 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -8144850 129996151 129998612 145508738 145511151 NC_060925.1 CM039034.1 96.6 True relocation, inconsistency = -247938 129750846 129754151 145511323 145514557 NC_060925.1 CM039034.1 95.34 True relocation, inconsistency = 8436676 138190859 138193397 145514589 145517104 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 3443083 141636891 141638305 145517515 145518932 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -11889054 129749367 129754166 145519048 145523864 NC_060925.1 CM039034.1 97.35 True relocation, inconsistency = 10424787 140178954 140182975 145523865 145527886 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = -10250927 129932089 129933836 145527927 145529674 NC_060925.1 CM039034.1 98.28 True relocation, inconsistency = 8554974 138490499 138495770 145531363 145536662 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -8131621 130364367 130365535 145536880 145538048 NC_060925.1 CM039034.1 97.36 True relocation, inconsistency = -615305 129750231 129755646 145538049 145543486 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 5337204 135092989 135096718 145543625 145547352 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = 5027938 140124657 140127223 145547353 145549896 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = -1994939 138136840 138141000 145554452 145558590 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = -8389311 129751690 129754151 145558591 145561004 NC_060925.1 CM039034.1 96.42 True relocation, inconsistency = 239230 129994698 129998612 145562321 145566187 NC_060925.1 CM039034.1 96.55 True relocation, inconsistency = 7819790 137818434 137820633 145566219 145568395 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -1274831 136545803 136549293 145568396 145571886 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -6877184 129672110 129673098 145571887 145572875 NC_060925.1 CM039034.1 97.71 True local misassembly 129674229 129675405 145573516 145574692 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 12460117 142136320 142139424 145575490 145578548 NC_060925.1 CM039034.1 96.43 True relocation, inconsistency = -2779009 139361056 139361767 145579189 145579900 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = -3282664 136079285 136081877 145580082 145582647 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -6134031 129949173 129953244 145583974 145587995 NC_060925.1 CM039034.1 95.68 True relocation, inconsistency = 4875675 134829262 134831854 145588338 145590925 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = -2552137 132281406 132284545 145592614 145595747 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = -2534315 129750231 129755646 145595748 145601185 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 5911962 135667750 135668625 145601327 145602202 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 3918318 139587078 139591874 145602337 145607133 NC_060925.1 CM039034.1 97.83 True relocation, inconsistency = -1107269 138489623 138493662 145612151 145616168 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = -8497634 129996474 129996976 145616614 145617116 NC_060925.1 CM039034.1 97.22 True local misassembly 129997292 129997878 145617117 145617703 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 6616338 136614933 136619478 145618420 145622917 NC_060925.1 CM039034.1 96.31 True relocation, inconsistency = -4557997 132061716 132064287 145623152 145625723 NC_060925.1 CM039034.1 98.52 True relocation, inconsistency = -2037636 130028126 130029274 145627198 145628346 NC_060925.1 CM039034.1 98.61 True indel: indel (> 5bp) 130029541 130031395 145628564 145630418 NC_060925.1 CM039034.1 97.79 True local misassembly 130031601 130032430 145630460 145631289 NC_060925.1 CM039034.1 97.59 True indel: indel (<= 5bp) 130032431 130033624 145631291 145632484 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 4795685 134829539 134835352 145632714 145638541 NC_060925.1 CM039034.1 96.14 True relocation, inconsistency = -1203583 133632234 133633292 145639006 145640064 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -3890138 129743724 129746416 145640634 145643326 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 3906871 133653288 133659762 145643327 145649773 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = -3917134 129743237 129746920 145650382 145654042 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 5081831 134829528 134830241 145654819 145655532 NC_060925.1 CM039034.1 98.88 True indel: indel (<= 5bp) 134830247 134833685 145655533 145658971 NC_060925.1 CM039034.1 98.31 True indel: indel (> 5bp) 134833686 134834439 145658998 145659751 NC_060925.1 CM039034.1 97.88 True local misassembly 134835437 134836835 145660481 145661879 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 1711226 136548919 136552156 145662737 145665999 NC_060925.1 CM039034.1 97.61 True relocation, inconsistency = -1722748 134829528 134834759 145666119 145671348 NC_060925.1 CM039034.1 97.3 True local misassembly 134829528 134830241 145672141 145672854 NC_060925.1 CM039034.1 98.88 True indel: indel (<= 5bp) 134830247 134833685 145672855 145676293 NC_060925.1 CM039034.1 98.28 True indel: indel (> 5bp) 134833686 134834439 145676320 145677073 NC_060925.1 CM039034.1 97.88 True local misassembly 134835437 134836835 145677803 145679201 NC_060925.1 CM039034.1 97.5 True relocation, inconsistency = 1711226 136548919 136552156 145680059 145683321 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -1722748 134829528 134835591 145683441 145689525 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 59160 134894752 134895377 145689526 145690151 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 4654861 139551342 139553587 145691255 145693511 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -5489764 134064451 134065105 145694139 145694793 NC_060925.1 CM039034.1 99.08 True local misassembly 134065106 134065785 145695236 145695915 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 3553092 137618878 137622126 145695916 145699168 NC_060925.1 CM039034.1 98.86 True relocation, inconsistency = 2592552 140215290 140221049 145699780 145705394 NC_060925.1 CM039034.1 95.52 True relocation, inconsistency = -5322622 134898428 134899123 145705395 145706090 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 1399506 136299208 136299807 145706669 145707268 NC_060925.1 CM039034.1 99.0 True indel: indel (> 5bp) 136299834 136302173 145707269 145709608 NC_060925.1 CM039034.1 98.46 True local misassembly 136302642 136303462 145709609 145710429 NC_060925.1 CM039034.1 98.78 True local misassembly 136304043 136305808 145711918 145713683 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = -6273170 130032639 130033376 145713684 145714421 NC_060925.1 CM039034.1 97.2 True indel: indel (<= 5bp) 130033377 130034367 145714423 145715413 NC_060925.1 CM039034.1 97.28 True local misassembly 130034368 130035547 145715879 145717058 NC_060925.1 CM039034.1 98.81 True relocation, inconsistency = 2588019 127442655 127444777 145720767 145718630 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 2903993 130349535 130352396 145721532 145724394 NC_060925.1 CM039034.1 98.22 True local misassembly 130349726 130352396 145724625 145727296 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 8131091 138483527 138484776 145727336 145728585 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = 1102838 139587639 139589907 145728610 145730852 NC_060925.1 CM039034.1 97.2 True relocation, inconsistency = -5118575 134471333 134476534 145730853 145736037 NC_060925.1 CM039034.1 96.88 True relocation, inconsistency = 5198310 139674909 139675770 145736102 145736986 NC_060925.1 CM039034.1 95.86 True relocation, inconsistency = -9327182 130348589 130353777 145736987 145742125 NC_060925.1 CM039034.1 96.84 True relocation, inconsistency = 10622981 140976789 140983330 145742156 145748676 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = -10596970 130386361 130388101 145748677 145750417 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 723930 131113721 131116737 145752107 145755100 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = 3679429 134803883 134806021 145762817 145764929 NC_060925.1 CM039034.1 96.45 True relocation, inconsistency = 713718 135529241 135529909 145774431 145775099 NC_060925.1 CM039034.1 97.16 True indel: indel (<= 5bp) 135529914 135530747 145775100 145775933 NC_060925.1 CM039034.1 97.6 True fake: not a misassembly (possible transposable element) 138770739 138773671 145776867 145779776 NC_060925.1 CM039034.1 97.1 True fake: not a misassembly (possible transposable element) 135529205 135530747 145779777 145781319 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 3239058 138770739 138773671 145782253 145785162 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 2131266 140904938 140906916 145785163 145787111 NC_060925.1 CM039034.1 95.36 True relocation, inconsistency = -1304245 139602883 139603424 145787323 145787864 NC_060925.1 CM039034.1 97.3 True relocation, inconsistency = 2366465 141969890 141975641 145787865 145793616 NC_060925.1 CM039034.1 97.77 True relocation, inconsistency = -11594392 130381260 130384840 145793627 145797206 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 8662172 139049012 139051552 145799206 145801754 NC_060925.1 CM039034.1 96.16 True relocation, inconsistency = -4228128 134823425 134824764 145801755 145803094 NC_060925.1 CM039034.1 97.65 True local misassembly 134824765 134825758 145803563 145804556 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = -2573438 132253549 132255358 145805785 145807594 NC_060925.1 CM039034.1 97.44 True relocation, inconsistency = -1837485 130417874 130421608 145807595 145811329 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = 7317559 137741687 137744670 145813849 145816832 NC_060925.1 CM039034.1 98.36 True local misassembly 137745070 137745648 145817059 145817637 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -7802780 129943004 129945577 145817773 145820320 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 4873853 134821882 134823705 145822772 145824595 NC_060925.1 CM039034.1 96.98 True indel: indel (> 5bp) 134823758 134824815 145824596 145825653 NC_060925.1 CM039034.1 98.3 True local misassembly 134825189 134826083 145826494 145827388 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 3648492 138476061 138480349 145828874 145833141 NC_060925.1 CM039034.1 96.18 True relocation, inconsistency = 1023105 139503455 139505668 145833142 145835355 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -7254360 132253549 132255543 145837596 145839590 NC_060925.1 CM039034.1 97.44 True local misassembly 132255544 132257106 145840059 145841621 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = -8014 132251425 132256667 145843954 145849095 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 5488186 137745070 137745648 145849312 145849890 NC_060925.1 CM039034.1 97.24 True relocation, inconsistency = -7796074 129949710 129952283 145850026 145852573 NC_060925.1 CM039034.1 97.01 True relocation, inconsistency = 3692380 133648125 133648938 145856035 145856848 NC_060925.1 CM039034.1 97.3 True indel: indel (> 5bp) 133648991 133650048 145856849 145857906 NC_060925.1 CM039034.1 98.49 True local misassembly 133650422 133651356 145858747 145859681 NC_060925.1 CM039034.1 98.5 True relocation, inconsistency = -3619147 130033577 130036164 145861049 145863636 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 11719630 141759418 141760156 145867260 145867998 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -5215864 136544503 136549293 145868209 145872973 NC_060925.1 CM039034.1 97.56 True relocation, inconsistency = -1721882 134828008 134833639 145873570 145879195 NC_060925.1 CM039034.1 98.51 True relocation, inconsistency = -4599974 130233701 130234666 145879231 145880196 NC_060925.1 CM039034.1 97.52 True relocation, inconsistency = 3771969 134007184 134012014 145880745 145885552 NC_060925.1 CM039034.1 97.37 True relocation, inconsistency = -3645446 130366988 130371099 145885972 145890065 NC_060925.1 CM039034.1 95.75 True relocation, inconsistency = 13762 130384862 130385889 145890066 145891090 NC_060925.1 CM039034.1 95.99 True relocation, inconsistency = 11178498 141564481 141565615 145891184 145892321 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = -9527064 132042517 132045347 145896287 145899068 NC_060925.1 CM039034.1 95.97 True relocation, inconsistency = -1890145 130155203 130158684 145899069 145902551 NC_060925.1 CM039034.1 97.39 True relocation, inconsistency = 5170696 135333926 135335985 145907097 145909156 NC_060925.1 CM039034.1 98.4 True local misassembly 135335986 135337014 145909596 145910624 NC_060925.1 CM039034.1 99.13 True relocation, inconsistency = 7887596 127444119 127444881 145914895 145914133 NC_060925.1 CM039034.1 98.69 True indel: indel (> 5bp) 127443329 127444118 145915701 145914912 NC_060925.1 CM039034.1 98.61 True indel: indel (<= 5bp) 127442655 127443327 145916374 145915702 NC_060925.1 CM039034.1 98.51 True local misassembly 127441319 127442264 145917320 145916375 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 2611170 130053435 130056362 145917321 145920294 NC_060925.1 CM039034.1 96.03 True relocation, inconsistency = 4776416 134833969 134835823 145921485 145923313 NC_060925.1 CM039034.1 96.39 True relocation, inconsistency = 57950 134894751 134896209 145924291 145925749 NC_060925.1 CM039034.1 97.49 True relocation, inconsistency = 2728534 137624744 137629277 145925750 145930287 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = 10178503 127444711 127446240 145931817 145930288 NC_060925.1 CM039034.1 97.94 True local misassembly 127444119 127446339 145934038 145931818 NC_060925.1 CM039034.1 98.06 True local misassembly 127444966 127445894 145934967 145934039 NC_060925.1 CM039034.1 98.48 True indel: indel (> 5bp) 127444119 127444942 145935791 145934968 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 12775357 140220472 140225337 145935964 145940807 NC_060925.1 CM039034.1 97.45 True relocation, inconsistency = 12773352 127444966 127446941 145942961 145940986 NC_060925.1 CM039034.1 98.48 True local misassembly 127444966 127446718 145944714 145942962 NC_060925.1 CM039034.1 98.4 True indel: indel (> 5bp) 127444119 127444942 145945538 145944715 NC_060925.1 CM039034.1 97.69 True indel: indel (> 5bp) 127443329 127444118 145946344 145945555 NC_060925.1 CM039034.1 98.23 True indel: indel (<= 5bp) 127442655 127443327 145947017 145946345 NC_060925.1 CM039034.1 97.47 True local misassembly 127441555 127442264 145947727 145947018 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 12168686 139610951 139613912 145947728 145950711 NC_060925.1 CM039034.1 96.58 True relocation, inconsistency = -6367727 133246186 133247004 145950712 145951530 NC_060925.1 CM039034.1 98.25 True indel: indel (<= 5bp) 133247006 133247650 145951531 145952175 NC_060925.1 CM039034.1 98.6 True local misassembly 133248119 133249599 145952176 145953656 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = 1413407 134664857 134668165 145955507 145958794 NC_060925.1 CM039034.1 96.38 True relocation, inconsistency = -4716871 129953713 129955916 145961213 145963416 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 451826 130407855 130409576 145963529 145965260 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 6705884 137115461 137116298 145965261 145966099 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = 1284464 138400763 138406247 145966100 145971586 NC_060925.1 CM039034.1 97.94 True relocation, inconsistency = 3621515 142027871 142029991 145971695 145973815 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = -3267342 138762746 138764442 145973912 145975608 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -2263215 136501236 136502789 145975617 145977145 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 9056084 127443389 127445038 145978924 145977259 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 5468493 132913532 132917086 145978925 145982453 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 1768759 134686815 134689177 145983423 145985759 NC_060925.1 CM039034.1 95.81 True relocation, inconsistency = 3593622 138282800 138287160 145985760 145990120 NC_060925.1 CM039034.1 98.58 True relocation, inconsistency = 475489 138762746 138764442 145990217 145991913 NC_060925.1 CM039034.1 98.76 True relocation, inconsistency = -2263215 136501236 136502789 145991922 145993450 NC_060925.1 CM039034.1 95.88 True relocation, inconsistency = 9056084 127443389 127445038 145995229 145993564 NC_060925.1 CM039034.1 97.68 True relocation, inconsistency = 4488558 131933597 131937151 145995230 145998758 NC_060925.1 CM039034.1 97.69 True relocation, inconsistency = 2748694 134686815 134689532 145999728 146002396 NC_060925.1 CM039034.1 95.81 True relocation, inconsistency = 5460672 140150453 140153181 146002645 146005373 NC_060925.1 CM039034.1 98.17 True relocation, inconsistency = 12706450 127443329 127444002 146006047 146005374 NC_060925.1 CM039034.1 97.72 True indel: indel (<= 5bp) 127442655 127443327 146006720 146006048 NC_060925.1 CM039034.1 98.07 True local misassembly 127441206 127442264 146007779 146006721 NC_060925.1 CM039034.1 98.3 True local misassembly 127444119 127446358 146010101 146007862 NC_060925.1 CM039034.1 98.57 True indel: indel (> 5bp) 127443329 127444118 146010907 146010118 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 146011580 146010908 NC_060925.1 CM039034.1 98.37 True local misassembly 127441206 127442264 146012639 146011581 NC_060925.1 CM039034.1 98.49 True fake: not a misassembly (possible transposable element) 141992591 141996301 146012681 146016392 NC_060925.1 CM039034.1 98.33 True fake: not a misassembly (possible transposable element) 127442655 127443170 146016908 146016393 NC_060925.1 CM039034.1 98.66 True local misassembly 127441206 127442264 146017967 146016909 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = 13860778 141303084 141304705 146018009 146019630 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = -754053 140550653 140555078 146019631 146024074 NC_060925.1 CM039034.1 97.48 True relocation, inconsistency = 1520893 142075972 142079020 146024075 146027141 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -778322 141301132 141301657 146027575 146028100 NC_060925.1 CM039034.1 97.34 True indel: indel (> 5bp) 141302035 141304486 146028456 146030907 NC_060925.1 CM039034.1 98.0 True local misassembly 141304955 141305699 146030908 146031652 NC_060925.1 CM039034.1 99.33 True indel: indel (<= 5bp) 141305700 141306657 146031654 146032611 NC_060925.1 CM039034.1 97.6 True relocation, inconsistency = -11264519 130042536 130043720 146033009 146034193 NC_060925.1 CM039034.1 98.14 True local misassembly 130044189 130045883 146034194 146035888 NC_060925.1 CM039034.1 96.76 True relocation, inconsistency = 1909451 131962799 131963402 146043353 146043956 NC_060925.1 CM039034.1 97.04 True relocation, inconsistency = 2869608 134833011 134837599 146043957 146048571 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 767196 135610082 135610957 146053858 146054733 NC_060925.1 CM039034.1 98.63 True local misassembly 135610958 135611586 146054890 146055518 NC_060925.1 CM039034.1 96.66 True relocation, inconsistency = 5095366 140707310 140710587 146055876 146059153 NC_060925.1 CM039034.1 98.14 True local misassembly 140711418 140712160 146059525 146060267 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = -6025302 134686859 134689532 146060268 146062946 NC_060925.1 CM039034.1 97.09 True relocation, inconsistency = 134513 134837917 134840200 146076818 146079101 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = 5696459 140536992 140542049 146079434 146084469 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = 1454308 141996358 141999056 146084470 146087119 NC_060925.1 CM039034.1 97.02 True relocation, inconsistency = -358057 141641024 141645424 146087144 146091547 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -3384951 138264010 138265317 146095084 146096391 NC_060925.1 CM039034.1 98.93 True local misassembly 138265954 138267480 146096559 146098085 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 1825902 140097071 140099948 146101774 146104652 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -2807670 137292279 137293136 146104653 146105510 NC_060925.1 CM039034.1 97.12 True indel: indel (> 5bp) 137293137 137294113 146105586 146106562 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -2459830 134834319 134838071 146106598 146110347 NC_060925.1 CM039034.1 97.92 True local misassembly 134837917 134840200 146111959 146114242 NC_060925.1 CM039034.1 98.29 True relocation, inconsistency = 5696459 140536992 140542049 146114575 146119610 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 1604614 142146664 142149659 146119611 146122580 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = -1171957 140978715 140982858 146123593 146127716 NC_060925.1 CM039034.1 97.37 True local misassembly 140980150 140980884 146127717 146128451 NC_060925.1 CM039034.1 98.39 True local misassembly 140981353 140982454 146128452 146129553 NC_060925.1 CM039034.1 97.82 True indel: indel (<= 5bp) 140982455 140983115 146129557 146130217 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -2139403 138846957 138848944 146133462 146135448 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -8485348 130367136 130370218 146138988 146142041 NC_060925.1 CM039034.1 95.75 True relocation, inconsistency = 11209882 141580124 141580829 146142065 146142770 NC_060925.1 CM039034.1 96.74 True indel: indel (> 5bp) 141580830 141581400 146142846 146143416 NC_060925.1 CM039034.1 97.37 True indel: indel (> 5bp) 141581424 141582013 146143417 146144006 NC_060925.1 CM039034.1 98.98 True local misassembly 141582482 141583522 146144007 146145047 NC_060925.1 CM039034.1 98.66 True relocation, inconsistency = 585598 142173371 142174391 146149298 146150318 NC_060925.1 CM039034.1 96.57 True relocation, inconsistency = -534343 141641024 141643863 146151294 146154133 NC_060925.1 CM039034.1 98.24 True local misassembly 141643864 141644763 146154602 146155501 NC_060925.1 CM039034.1 97.89 True indel: indel (<= 5bp) 141644764 141645424 146155505 146156165 NC_060925.1 CM039034.1 97.58 True relocation, inconsistency = -6179922 135469043 135474208 146159706 146164847 NC_060925.1 CM039034.1 96.69 True relocation, inconsistency = -639720 134834489 134837599 146164848 146167958 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 7150689 141990067 141992212 146169737 146171876 NC_060925.1 CM039034.1 95.89 True relocation, inconsistency = -8350751 133641462 133642870 146171877 146173285 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = 6482470 140126307 140127223 146174252 146175168 NC_060925.1 CM039034.1 97.71 True relocation, inconsistency = -6888646 133239260 133240718 146175851 146177283 NC_060925.1 CM039034.1 96.71 True relocation, inconsistency = 948074 134189658 134194019 146178149 146182489 NC_060925.1 CM039034.1 95.58 True relocation, inconsistency = 5929701 140124287 140128884 146183056 146187633 NC_060925.1 CM039034.1 97.39 True local misassembly 140126176 140127223 146187634 146188681 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -4047665 136079589 136081875 146188712 146190998 NC_060925.1 CM039034.1 98.38 True relocation, inconsistency = -6132703 129949173 129953319 146190999 146195118 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 11003889 140957355 140958885 146195265 146196806 NC_060925.1 CM039034.1 96.82 True relocation, inconsistency = -10576057 130382829 130384105 146196807 146198083 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -634207 129750181 129754171 146198366 146202346 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 9081855 138836690 138837586 146203010 146203906 NC_060925.1 CM039034.1 99.11 True fake: not a misassembly (possible transposable element) 132258351 132260165 146204094 146205908 NC_060925.1 CM039034.1 98.02 True fake: not a misassembly (possible transposable element) 138839665 138840896 146205910 146207141 NC_060925.1 CM039034.1 98.62 True relocation, inconsistency = 3320573 142164117 142164844 146209789 146210516 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -9890517 132274328 132275808 146210517 146211997 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = 9881752 142164117 142164844 146218554 146219281 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -8948955 133215890 133216905 146219282 146220297 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = 7733972 140953537 140955046 146222957 146224466 NC_060925.1 CM039034.1 96.82 True local misassembly 140955512 140956652 146224467 146225607 NC_060925.1 CM039034.1 98.07 True relocation, inconsistency = 1179110 142137256 142138072 146227101 146227917 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -7311988 134826194 134827583 146228027 146229416 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = 7303223 142137256 142138061 146235866 146236671 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = -8478736 133659326 133660835 146236672 146238181 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = -26509 133641114 133642623 146244969 146246478 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = 8053935 141696982 141698885 146246902 146248805 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -9223198 132478866 132484243 146251984 146257374 NC_060925.1 CM039034.1 96.22 True relocation, inconsistency = 1973913 134460683 134462771 146259901 146261989 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = 5155370 139618234 139621740 146262082 146265610 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -9875780 129745961 129746584 146265611 146266234 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 308623 130055609 130061383 146266636 146272433 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 10130718 140194623 140196089 146274955 146276422 NC_060925.1 CM039034.1 97.21 True relocation, inconsistency = -10263958 129934643 129935733 146278934 146280024 NC_060925.1 CM039034.1 98.26 True relocation, inconsistency = -184069 129752491 129754382 146280851 146282742 NC_060925.1 CM039034.1 97.55 True relocation, inconsistency = 301700 130056083 130061383 146282743 146288017 NC_060925.1 CM039034.1 96.72 True relocation, inconsistency = 5022629 135084462 135085348 146288467 146289353 NC_060925.1 CM039034.1 98.31 True relocation, inconsistency = 4471528 139560271 139562501 146292748 146294978 NC_060925.1 CM039034.1 97.58 True indel: indel (> 5bp) 139562502 139563122 146294989 146295609 NC_060925.1 CM039034.1 97.58 True indel: indel (> 5bp) 139563123 139564014 146295633 146296524 NC_060925.1 CM039034.1 96.3 True local misassembly 139565811 139567474 146298244 146299917 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 639536 140207011 140209333 146299918 146302240 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -10461016 129752327 129753905 146306250 146307805 NC_060925.1 CM039034.1 96.07 True relocation, inconsistency = 7361361 137115461 137116298 146308000 146308838 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 1284464 138400763 138405837 146308839 146313915 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 10955189 127443389 127445038 146316116 146314451 NC_060925.1 CM039034.1 97.74 True relocation, inconsistency = 4488558 131933597 131937151 146316117 146319645 NC_060925.1 CM039034.1 97.72 True relocation, inconsistency = 9731423 141672484 141674351 146323555 146325422 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -3570859 138103493 138108581 146325423 146330485 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 2914984 141023566 141024718 146330486 146331638 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 275949 141300668 141304432 146331639 146335381 NC_060925.1 CM039034.1 97.34 True relocation, inconsistency = -10960497 130343936 130352987 146335382 146344426 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 7015583 137368571 137369567 146344427 146345423 NC_060925.1 CM039034.1 98.84 True relocation, inconsistency = 2295831 139673174 139674865 146353199 146354890 NC_060925.1 CM039034.1 97.64 True relocation, inconsistency = -2383949 137290917 137292243 146354891 146356217 NC_060925.1 CM039034.1 97.94 True indel: indel (> 5bp) 137292270 137293136 146356218 146357084 NC_060925.1 CM039034.1 96.89 True indel: indel (> 5bp) 137293137 137294113 146357160 146358136 NC_060925.1 CM039034.1 97.75 True relocation, inconsistency = -2459830 134834319 134837447 146358172 146361300 NC_060925.1 CM039034.1 98.24 True relocation, inconsistency = -4287217 130554400 130556362 146365470 146367432 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 3080172 127467098 127468135 146374562 146373525 NC_060925.1 CM039034.1 97.59 True relocation, inconsistency = 13610 127451458 127452310 146376592 146375740 NC_060925.1 CM039034.1 97.3 True local misassembly 127451458 127452310 146378807 146377955 NC_060925.1 CM039034.1 97.19 True relocation, inconsistency = 6345517 133806633 133809747 146387613 146390727 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = -3460302 130349535 130352987 146390817 146394270 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 6895563 137250425 137252998 146396145 146398692 NC_060925.1 CM039034.1 97.67 True relocation, inconsistency = 4841105 142094405 142096928 146398994 146401549 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = -1015863 141081066 141082510 146401550 146402994 NC_060925.1 CM039034.1 98.21 True indel: indel (<= 5bp) 141082511 141084245 146402996 146404730 NC_060925.1 CM039034.1 97.98 True local misassembly 141084714 141086364 146404731 146406381 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1006984 142094405 142096928 146407438 146409993 NC_060925.1 CM039034.1 96.28 True relocation, inconsistency = 64643 142164039 142164678 146412461 146413100 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 14718994 127444119 127444881 146414026 146413264 NC_060925.1 CM039034.1 98.82 True indel: indel (> 5bp) 127443329 127444118 146414832 146414043 NC_060925.1 CM039034.1 98.48 True indel: indel (<= 5bp) 127442655 127443327 146415505 146414833 NC_060925.1 CM039034.1 98.51 True local misassembly 127441373 127442264 146416397 146415506 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 2907200 130349535 130352987 146416468 146419921 NC_060925.1 CM039034.1 98.18 True relocation, inconsistency = 6895563 137250425 137252998 146421796 146424343 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = 9805535 127444128 127444881 146425105 146424352 NC_060925.1 CM039034.1 98.54 True indel: indel (> 5bp) 127443329 127444127 146425920 146425122 NC_060925.1 CM039034.1 98.37 True indel: indel (<= 5bp) 127442655 127443327 146426593 146425921 NC_060925.1 CM039034.1 98.37 True local misassembly 127441373 127442264 146427485 146426594 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 14304653 141746988 141748529 146427556 146429097 NC_060925.1 CM039034.1 98.31 True indel: indel (<= 5bp) 141748530 141750070 146429099 146430639 NC_060925.1 CM039034.1 97.98 True relocation, inconsistency = -1537531 140212540 140215992 146430640 146434109 NC_060925.1 CM039034.1 97.41 True relocation, inconsistency = -6212768 134003371 134009408 146434256 146440316 NC_060925.1 CM039034.1 97.79 True relocation, inconsistency = 3242759 137252168 137252998 146440317 146441147 NC_060925.1 CM039034.1 97.63 True relocation, inconsistency = -2361530 134895013 134898527 146444692 146448239 NC_060925.1 CM039034.1 97.18 True relocation, inconsistency = 7181299 142079925 142082345 146448338 146450758 NC_060925.1 CM039034.1 97.85 True relocation, inconsistency = -8808605 133274973 133275605 146451991 146452623 NC_060925.1 CM039034.1 96.51 True relocation, inconsistency = 3170177 136445783 136449118 146452624 146455881 NC_060925.1 CM039034.1 96.04 True relocation, inconsistency = 678958 137129509 137130386 146457314 146458191 NC_060925.1 CM039034.1 99.2 True indel: indel (<= 5bp) 137130707 137131759 146458510 146459562 NC_060925.1 CM039034.1 98.1 True local misassembly 137131766 137132512 146459716 146460462 NC_060925.1 CM039034.1 97.99 True relocation, inconsistency = -7382320 129751859 129754653 146462129 146464845 NC_060925.1 CM039034.1 95.1 True relocation, inconsistency = 6690472 136445783 136449118 146465503 146468760 NC_060925.1 CM039034.1 96.04 True local misassembly 136450519 136451335 146470162 146470978 NC_060925.1 CM039034.1 98.29 True local misassembly 136447313 136448353 146471389 146472429 NC_060925.1 CM039034.1 97.79 True local misassembly 136448354 136449118 146472577 146473341 NC_060925.1 CM039034.1 98.95 True relocation, inconsistency = -6389700 130061287 130065730 146475210 146479571 NC_060925.1 CM039034.1 95.16 True relocation, inconsistency = 875170 130940901 130943531 146479572 146482202 NC_060925.1 CM039034.1 97.54 True relocation, inconsistency = 4538856 135482388 135483249 146482203 146483064 NC_060925.1 CM039034.1 96.97 True relocation, inconsistency = -5463807 130019443 130021994 146483065 146485567 NC_060925.1 CM039034.1 95.84 True relocation, inconsistency = 7269003 137290998 137294113 146485568 146488683 NC_060925.1 CM039034.1 97.82 True relocation, inconsistency = 1825000 139119807 139120522 146489377 146490092 NC_060925.1 CM039034.1 98.6 True indel: indel (> 5bp) 139120575 139121251 146490093 146490769 NC_060925.1 CM039034.1 99.56 True local misassembly 139121720 139123555 146490770 146492605 NC_060925.1 CM039034.1 98.53 True relocation, inconsistency = -4042572 135081239 135084753 146492861 146496408 NC_060925.1 CM039034.1 97.1 True relocation, inconsistency = 6995073 142079925 142082070 146496507 146498652 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = -8440483 133641588 133642791 146498653 146499804 NC_060925.1 CM039034.1 96.05 True relocation, inconsistency = -3890933 129751859 129754653 146499805 146502521 NC_060925.1 CM039034.1 95.35 True relocation, inconsistency = 5070124 134825189 134825799 146502933 146503543 NC_060925.1 CM039034.1 99.02 True indel: indel (<= 5bp) 134825801 134827570 146503544 146505313 NC_060925.1 CM039034.1 98.14 True local misassembly 134827571 134829522 146505782 146507733 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = -5077669 129751859 129752398 146507739 146508278 NC_060925.1 CM039034.1 97.59 True local misassembly 129753193 129754320 146508972 146510099 NC_060925.1 CM039034.1 98.43 True relocation, inconsistency = 2237770 131992091 131995501 146510100 146513510 NC_060925.1 CM039034.1 97.66 True relocation, inconsistency = 4328934 136327226 136329808 146516301 146518857 NC_060925.1 CM039034.1 97.26 True relocation, inconsistency = -1496163 134834067 134836558 146519279 146521770 NC_060925.1 CM039034.1 97.63 True indel: indel (> 5bp) 134836611 134838041 146521771 146523201 NC_060925.1 CM039034.1 98.95 True local misassembly 134838042 134838975 146523643 146524576 NC_060925.1 CM039034.1 98.39 True relocation, inconsistency = 4391167 139232820 139236147 146527254 146530577 NC_060925.1 CM039034.1 97.22 True relocation, inconsistency = -3782335 135456564 135459685 146533329 146536422 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = -821592 134638094 134640307 146536423 146538639 NC_060925.1 CM039034.1 96.4 True relocation, inconsistency = 6521596 141162013 141163911 146538749 146540647 NC_060925.1 CM039034.1 98.16 True relocation, inconsistency = -10611041 130554463 130556155 146542240 146543932 NC_060925.1 CM039034.1 96.93 True local misassembly 130556380 130557318 146543933 146544871 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -7671 130554463 130556155 146549687 146551379 NC_060925.1 CM039034.1 96.87 True local misassembly 130556380 130557302 146551380 146552302 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = 5623113 136180416 136182090 146552303 146553972 NC_060925.1 CM039034.1 98.15 True relocation, inconsistency = 9216107 126957373 126957906 146560908 146560375 NC_060925.1 CM039034.1 96.59 True relocation, inconsistency = 13168415 140126322 140128900 146560909 146563463 NC_060925.1 CM039034.1 96.67 True relocation, inconsistency = 1921609 142050694 142052507 146563648 146565438 NC_060925.1 CM039034.1 96.36 True relocation, inconsistency = -4923144 137129364 137133486 146565439 146569540 NC_060925.1 CM039034.1 96.61 True relocation, inconsistency = 4845848 141979335 141981663 146569541 146571842 NC_060925.1 CM039034.1 95.47 True relocation, inconsistency = -3172979 138809778 138811919 146572936 146575077 NC_060925.1 CM039034.1 99.07 True relocation, inconsistency = 358274 139173336 139175464 146578220 146580348 NC_060925.1 CM039034.1 98.45 True relocation, inconsistency = -8114350 131064192 131067224 146583426 146586456 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 9242723 140310859 140313248 146587368 146589754 NC_060925.1 CM039034.1 98.12 True local misassembly 140310859 140313248 146593676 146596062 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -9250198 131064192 131067224 146597204 146600234 NC_060925.1 CM039034.1 98.65 True relocation, inconsistency = 9242723 140310859 140313248 146601146 146603532 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = -7155595 133162975 133165561 146608854 146611418 NC_060925.1 CM039034.1 95.18 True relocation, inconsistency = 1680255 134848780 134854693 146614382 146620281 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 1296705 136151399 136154118 146620282 146623001 NC_060925.1 CM039034.1 98.72 True local misassembly 136154445 136155631 146623795 146624981 NC_060925.1 CM039034.1 99.16 True relocation, inconsistency = 3353662 139510351 139512704 146626039 146628400 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -9336165 130176565 130178814 146628426 146630675 NC_060925.1 CM039034.1 98.8 True relocation, inconsistency = 4650490 134830005 134834157 146631376 146635546 NC_060925.1 CM039034.1 96.98 True local misassembly 134830177 134836107 146635547 146641475 NC_060925.1 CM039034.1 97.31 True relocation, inconsistency = 7383784 127444119 127446392 146643749 146641476 NC_060925.1 CM039034.1 98.26 True indel: indel (> 5bp) 127443575 127444118 146644309 146643766 NC_060925.1 CM039034.1 98.35 True indel: indel (<= 5bp) 127442655 127443327 146645227 146644555 NC_060925.1 CM039034.1 98.51 True local misassembly 127441206 127442264 146646286 146645228 NC_060925.1 CM039034.1 98.02 True relocation, inconsistency = 12064481 139510351 139512704 146649892 146652253 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -1020455 138492275 138494457 146652279 146654488 NC_060925.1 CM039034.1 97.33 True relocation, inconsistency = -3665193 134830005 134835536 146655229 146660755 NC_060925.1 CM039034.1 97.28 True local misassembly 134831543 134834066 146660756 146663305 NC_060925.1 CM039034.1 96.76 True local misassembly 134830068 134835848 146663306 146669084 NC_060925.1 CM039034.1 97.14 True relocation, inconsistency = 7385644 127443329 127444118 146670179 146669390 NC_060925.1 CM039034.1 99.24 True indel: indel (<= 5bp) 127442655 127443327 146670852 146670180 NC_060925.1 CM039034.1 98.51 True local misassembly 127441241 127442264 146671876 146670853 NC_060925.1 CM039034.1 97.73 True relocation, inconsistency = 9323395 136765660 136770343 146671877 146676564 NC_060925.1 CM039034.1 98.1 True relocation, inconsistency = 3357030 140127467 140130551 146676658 146679697 NC_060925.1 CM039034.1 96.44 True relocation, inconsistency = -2719639 137411035 137415931 146679820 146684692 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = 3105964 140524809 140525790 146687606 146688587 NC_060925.1 CM039034.1 98.4 True relocation, inconsistency = -8595084 131930707 131934584 146688588 146692465 NC_060925.1 CM039034.1 98.66 True local misassembly 131935053 131936268 146692466 146693681 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 10138197 142074466 142076379 146693682 146695595 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = -1418381 140658441 140660860 146696038 146698457 NC_060925.1 CM039034.1 97.93 True relocation, inconsistency = -10256471 130404390 130405440 146698458 146699508 NC_060925.1 CM039034.1 98.54 True relocation, inconsistency = 2876202 133282289 133285358 146700155 146703224 NC_060925.1 CM039034.1 98.73 True relocation, inconsistency = 5764723 139051684 139054418 146704827 146707561 NC_060925.1 CM039034.1 99.09 True relocation, inconsistency = 1623813 140678665 140681946 146707995 146711276 NC_060925.1 CM039034.1 97.78 True relocation, inconsistency = 1285145 141967897 141972680 146712082 146716863 NC_060925.1 CM039034.1 97.97 True local misassembly 141973989 141976402 146716864 146719277 NC_060925.1 CM039034.1 98.42 True local misassembly 141976403 141977563 146719746 146720906 NC_060925.1 CM039034.1 98.11 True relocation, inconsistency = -9502518 132475327 132476263 146721188 146722101 NC_060925.1 CM039034.1 96.63 True relocation, inconsistency = -332172 132144092 132148150 146722102 146726138 NC_060925.1 CM039034.1 97.86 True relocation, inconsistency = 7922528 140075562 140079107 146731022 146734640 NC_060925.1 CM039034.1 96.3 True relocation, inconsistency = -5248862 134830247 134832349 146734642 146736744 NC_060925.1 CM039034.1 98.21 True relocation, inconsistency = 1234900 136067250 136072271 146736745 146741765 NC_060925.1 CM039034.1 98.57 True relocation, inconsistency = 477611 136550598 136552122 146742481 146744005 NC_060925.1 CM039034.1 98.49 True relocation, inconsistency = -1087441 135465053 135469426 146744377 146748697 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = -1852332 133618152 133618669 146749755 146750272 NC_060925.1 CM039034.1 99.44 True relocation, inconsistency = -1331953 132286717 132289800 146750273 146753381 NC_060925.1 CM039034.1 97.59 True local misassembly 132285913 132288497 146753931 146756540 NC_060925.1 CM039034.1 97.36 True fake: not a misassembly (possible transposable element) 134804048 134804565 146757598 146758115 NC_060925.1 CM039034.1 99.44 True fake: not a misassembly (possible transposable element) 132286717 132289826 146758116 146761224 NC_060925.1 CM039034.1 98.2 True relocation, inconsistency = -1349450 130940377 130942534 146761225 146763382 NC_060925.1 CM039034.1 97.81 True relocation, inconsistency = 7195349 138140954 138142868 146766453 146768394 NC_060925.1 CM039034.1 96.56 True relocation, inconsistency = -4120681 134022188 134023963 146768395 146770170 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -14306 134009658 134013259 146770171 146773772 NC_060925.1 CM039034.1 97.97 True relocation, inconsistency = -1949076 132064184 132068282 146773773 146777871 NC_060925.1 CM039034.1 98.19 True relocation, inconsistency = 9088731 141161998 141165239 146782856 146786048 NC_060925.1 CM039034.1 97.13 True relocation, inconsistency = -6182707 134983227 134984392 146786743 146787908 NC_060925.1 CM039034.1 99.06 True local misassembly 134985006 134985595 146788522 146789111 NC_060925.1 CM039034.1 99.31 True relocation, inconsistency = -1884021 133101575 133106291 146789112 146793830 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 8947587 142054106 142055014 146794058 146794966 NC_060925.1 CM039034.1 96.92 True relocation, inconsistency = -11625795 130430018 130431085 146795765 146796832 NC_060925.1 CM039034.1 98.61 True relocation, inconsistency = -760971 129670115 129675558 146796833 146802278 NC_060925.1 CM039034.1 98.04 True relocation, inconsistency = 10329991 140006048 140008971 146802777 146805700 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = 1328290 141337518 141340571 146805957 146809049 NC_060925.1 CM039034.1 96.9 True relocation, inconsistency = -28145 141312826 141313643 146809449 146810266 NC_060925.1 CM039034.1 98.3 True relocation, inconsistency = -2909213 138404431 138406436 146810267 146812272 NC_060925.1 CM039034.1 97.51 True relocation, inconsistency = 3031148 141438377 141441272 146813065 146815987 NC_060925.1 CM039034.1 97.84 True relocation, inconsistency = -11234572 130207485 130211729 146816772 146821042 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = 11947679 142159661 142161076 146821295 146822709 NC_060925.1 CM039034.1 97.88 True relocation, inconsistency = -1090419 141070658 141074424 146822710 146826478 NC_060925.1 CM039034.1 97.9 True relocation, inconsistency = -11424284 129650311 129652884 146826649 146829221 NC_060925.1 CM039034.1 97.16 True relocation, inconsistency = 10839828 140492713 140493869 146829222 146830378 NC_060925.1 CM039034.1 97.56 True indel: indel (<= 5bp) 140493871 140495908 146830379 146832416 NC_060925.1 CM039034.1 97.64 True local misassembly 140495909 140497393 146832885 146834369 NC_060925.1 CM039034.1 97.76 True relocation, inconsistency = -1014111 139483283 139485501 146834370 146836588 NC_060925.1 CM039034.1 97.43 True relocation, inconsistency = -9816038 129671541 129672544 146838666 146839668 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = 10930021 140602872 140603962 146839975 146841065 NC_060925.1 CM039034.1 97.98 True indel: indel (<= 5bp) 140604334 140607202 146841438 146844280 NC_060925.1 CM039034.1 96.41 True relocation, inconsistency = -520408 140087081 140089747 146844567 146847237 NC_060925.1 CM039034.1 97.4 True relocation, inconsistency = -492519 139597229 139601820 146847238 146851828 NC_060925.1 CM039034.1 96.81 True relocation, inconsistency = 2519699 142121520 142124932 146851829 146855238 NC_060925.1 CM039034.1 97.87 True relocation, inconsistency = -3561885 138563475 138564227 146855666 146856418 NC_060925.1 CM039034.1 97.74 True indel: indel (> 5bp) 138564228 138564965 146856494 146857231 NC_060925.1 CM039034.1 97.57 True relocation, inconsistency = -8182156 130382810 130384136 146857232 146858558 NC_060925.1 CM039034.1 96.99 True relocation, inconsistency = 11777553 142161690 142162338 146858559 146859207 NC_060925.1 CM039034.1 97.58 True local misassembly 142162558 142164473 146859208 146861123 NC_060925.1 CM039034.1 97.91 True relocation, inconsistency = -12192063 129972858 129974364 146861571 146863077 NC_060925.1 CM039034.1 97.27 True relocation, inconsistency = 2414831 132389196 132391547 146863078 146865429 NC_060925.1 CM039034.1 98.33 True relocation, inconsistency = 5062121 137453669 137459715 146865430 146871476 NC_060925.1 CM039034.1 98.38 True local misassembly 137456632 137457851 146871477 146872696 NC_060925.1 CM039034.1 97.97 True local misassembly 137454768 137458177 146872697 146876106 NC_060925.1 CM039034.1 98.12 True relocation, inconsistency = 4161298 141621227 141622970 146877858 146879601 NC_060925.1 CM039034.1 97.42 True relocation, inconsistency = -687846 140936527 140937579 146881004 146882056 NC_060925.1 CM039034.1 98.96 True relocation, inconsistency = -6047699 134890030 134893553 146882206 146885728 NC_060925.1 CM039034.1 98.47 True relocation, inconsistency = 1291646 136185228 136191431 146885757 146891964 NC_060925.1 CM039034.1 98.42 True relocation, inconsistency = -5327445 130863995 130867566 146891973 146895528 NC_060925.1 CM039034.1 97.65 True relocation, inconsistency = 9638631 140506562 140507271 146895893 146896602 NC_060925.1 CM039034.1 98.72 True relocation, inconsistency = 1655234 142162506 142166150 146896603 146900259 NC_060925.1 CM039034.1 97.95 True relocation, inconsistency = -12445403 129720748 129721770 146900260 146901281 NC_060925.1 CM039034.1 97.62 True relocation, inconsistency = 2733822 132457315 132457916 146903004 146903605 NC_060925.1 CM039034.1 98.34 True relocation, inconsistency = 1503674 133961755 133963680 146903770 146905695 NC_060925.1 CM039034.1 97.92 True relocation, inconsistency = 8207699 142172869 142176022 146907185 146910338 NC_060925.1 CM039034.1 97.11 True relocation, inconsistency = 19350 142195757 142196418 146910723 146911384 NC_060925.1 CM039034.1 97.13 True local misassembly 142199692 142203148 146915316 146918747 NC_060925.1 CM039034.1 95.14 True fake: not a misassembly (possible transposable element) 142183301 142185151 146919383 146921233 NC_060925.1 CM039034.1 96.0 True fake: not a misassembly (possible transposable element) 142207307 142208654 146922848 146924195 NC_060925.1 CM039034.1 95.77 True relocation, inconsistency = -19884 142189273 142190532 146924698 146925957 NC_060925.1 CM039034.1 95.95 True local misassembly 142191863 142192691 146927458 146928286 NC_060925.1 CM039034.1 95.66 True indel: indel (> 5bp) 142192921 142193566 146928450 146929095 NC_060925.1 CM039034.1 97.06 True local misassembly 142191863 142192688 146930349 146931174 NC_060925.1 CM039034.1 96.73 True indel: indel (> 5bp) 142192760 142193472 146931175 146931887 NC_060925.1 CM039034.1 98.18 True local misassembly 142196797 142197981 146932959 146934143 NC_060925.1 CM039034.1 96.2 True indel: indel (> 5bp) 142198000 142198623 146934185 146934808 NC_060925.1 CM039034.1 96.31 True local misassembly 142200796 142201465 146938270 146938939 NC_060925.1 CM039034.1 96.9 True local misassembly 142202899 142203765 146938940 146939806 NC_060925.1 CM039034.1 96.42 True indel: indel (<= 5bp) 142203771 142204500 146939807 146940536 NC_060925.1 CM039034.1 96.16 True local misassembly 142203099 142203765 146940863 146941529 NC_060925.1 CM039034.1 96.25 True local misassembly 142201799 142202403 146943003 146943607 NC_060925.1 CM039034.1 97.69 True indel: indel (> 5bp) 142202430 142203224 146943608 146944402 NC_060925.1 CM039034.1 96.23 True indel: indel (<= 5bp) 142203226 142203769 146944403 146944946 NC_060925.1 CM039034.1 96.32 True local misassembly 142207300 142208149 146944973 146945822 NC_060925.1 CM039034.1 95.88 True local misassembly 142210011 142212707 146947534 146950230 NC_060925.1 CM039034.1 96.26 True local misassembly 142212858 142213705 146950231 146951078 NC_060925.1 CM039034.1 95.28 True local misassembly 142214074 142215408 146951294 146952628 NC_060925.1 CM039034.1 95.88 True indel: indel (> 5bp) 142215432 142216319 146952629 146953516 NC_060925.1 CM039034.1 95.95 True indel: indel (> 5bp) 142216804 142217554 146953972 146954722 NC_060925.1 CM039034.1 96.8 True relocation, inconsistency = -26773 142191082 142192437 146955023 146956378 NC_060925.1 CM039034.1 95.94 True relocation, inconsistency = -16212 142179268 142180314 146959421 146960467 NC_060925.1 CM039034.1 96.08 True local misassembly 142180416 142180984 146960468 146961036 NC_060925.1 CM039034.1 95.61 True relocation, inconsistency = 39704 142222479 142229454 146962827 146969836 NC_060925.1 CM039034.1 98.14 True local misassembly 142232531 142240877 146969837 146978189 NC_060925.1 CM039034.1 99.03 True local misassembly 142237346 142281448 146978251 147022363 NC_060925.1 CM039034.1 99.26 True local misassembly 142282988 142335121 147023048 147075576 NC_060925.1 CM039034.1 97.99 True local misassembly 142336440 142339299 147077610 147080469 NC_060925.1 CM039034.1 99.72 True relocation, inconsistency = 1633410 143975281 143976106 147083866 147083041 NC_060925.1 CM039034.1 98.91 True local misassembly 143966735 143967589 147096152 147095298 NC_060925.1 CM039034.1 99.53 True local misassembly 143965830 143966734 147098122 147097218 NC_060925.1 CM039034.1 99.12 True indel: indel (> 5bp) 143965029 143965816 147098910 147098123 NC_060925.1 CM039034.1 99.49 True local misassembly 143964219 143965028 147100466 147099657 NC_060925.1 CM039034.1 99.51 True indel: indel (> 5bp) 143963568 143964192 147101091 147100467 NC_060925.1 CM039034.1 99.68 True local misassembly 143929285 143963233 147137194 147103501 NC_060925.1 CM039034.1 99.52 True relocation, inconsistency = -543242 143237523 144472526 147137195 148372299 NC_060925.1 CM039034.1 99.85 True relocation, inconsistency = -14270 144458257 144482089 148372300 148396115 NC_060925.1 CM039034.1 99.62 True relocation, inconsistency = -11148 144478824 145726321 148403998 149651410 NC_060925.1 CM039034.1 99.95 True relocation, inconsistency = -1228702 144497620 144517084 149651411 149670811 NC_060925.1 CM039034.1 97.06 True relocation, inconsistency = 1219190 145736275 146040357 149670812 149974878 NC_060925.1 CM039034.1 99.77 True indel: stretch of mismatches 146040358 146510228 149974879 150444142 NC_060925.1 CM039034.1 99.54 True inversion 146510399 146520347 150454091 150444143 NC_060925.1 CM039034.1 99.9 True inversion 146520170 147577833 150454092 151511507 NC_060925.1 CM039034.1 99.82 True indel: indel (<= 5bp) 147578276 147823706 151511953 151757422 NC_060925.1 CM039034.1 99.71 True relocation, inconsistency = -7836 147822018 148626251 151763570 152565150 NC_060925.1 CM039034.1 99.56 True relocation, inconsistency = -9515 148616737 149666247 152565151 153614689 NC_060925.1 CM039034.1 99.75 True local misassembly 149665343 151349673 153614690 155298633 NC_060925.1 CM039034.1 99.83 True local misassembly 151351031 151719619 155299991 155668559 NC_060925.1 CM039034.1 99.84 True relocation, inconsistency = 32197 151751819 160122109 155668562 164031348 NC_060925.1 CM039034.1 99.68 True local misassembly 160122463 160587313 164031391 164496186 NC_060925.1 CM039034.1 99.78 True relocation, inconsistency = -7424 160580042 160587313 164496339 164503585 NC_060925.1 CM039034.1 99.31 True indel: indel (> 5bp) 160587438 160828816 164503734 164745002 NC_060925.1 CM039034.1 99.3 True relocation, inconsistency = 81327 160910144 163552602 164745003 167387152 NC_060925.1 CM039034.1 99.77 True local misassembly 163552814 167825161 167387267 171665027 NC_060925.1 CM039034.1 99.7 True local misassembly 167826996 173275730 171667162 177114694 NC_060925.1 CM039034.1 99.76 True indel: indel (> 5bp) 173275839 174185385 177114727 178024595 NC_060925.1 CM039034.1 99.8 True local misassembly 174185382 174585177 178029881 178429700 NC_060925.1 CM039034.1 99.85 True local misassembly 174585825 178050449 178430157 181894558 NC_060925.1 CM039034.1 99.86 True indel: indel (> 5bp) 178050754 180429442 181894826 184273800 NC_060925.1 CM039034.1 99.71 True local misassembly 180429687 182749154 184274521 186594525 NC_060925.1 CM039034.1 99.86 True indel: indel (> 5bp) 182749192 182973560 186594553 186818936 NC_060925.1 CM039034.1 99.83 True local misassembly 182973805 188908644 186818937 192758834 NC_060925.1 CM039034.1 99.6 True indel: indel (> 5bp) 188908814 192645638 192758936 196495688 NC_060925.1 CM039034.1 99.77 True indel: indel (<= 5bp) 192645780 198064516 196495827 201916310 NC_060925.1 CM039034.1 99.82 True local misassembly 198064517 201934539 201917976 205787937 NC_060925.1 CM039034.1 99.72 True local misassembly 201934535 202978350 205788021 206831509 NC_060925.1 CM039034.1 99.77 True local misassembly 202980274 204815398 206831510 208653087 NC_060925.1 CM039034.1 99.08 True indel: indel (> 5bp) 204815497 205322873 208653193 209161153 NC_060925.1 CM039034.1 99.58 True local misassembly 205316963 205322430 209161154 209166621 NC_060925.1 CM039034.1 99.86 True local misassembly 205316521 206384250 209166622 210234312 NC_060925.1 CM039034.1 99.85 True local misassembly 206385102 206633926 210234426 210483220 NC_060925.1 CM039034.1 99.94 True local misassembly 206637528 214073246 210483221 217928838 NC_060925.1 CM039034.1 99.56 True local misassembly 214074006 214247027 217930253 218103249 NC_060925.1 CM039034.1 99.92 True indel: indel (> 5bp) 214247199 216020398 218103415 219876268 NC_060925.1 CM039034.1 99.86 True indel: indel (> 5bp) 216020662 216765945 219876476 220621536 NC_060925.1 CM039034.1 99.77 True local misassembly 216766245 219198025 220621996 223054474 NC_060925.1 CM039034.1 99.78 True local misassembly 219200330 227890652 223055373 231752629 NC_060925.1 CM039034.1 99.71 True relocation, inconsistency = 134332 228024985 232725629 231752630 236452897 NC_060925.1 CM039034.1 99.66 True indel: indel (> 5bp) 232725678 233767205 236452901 237492592 NC_060925.1 CM039034.1 99.51 True indel: indel (<= 5bp) 233767297 234386381 237492685 238111459 NC_060925.1 CM039034.1 99.71 True indel: indel (> 5bp) 234386410 234416692 238111478 238141739 NC_060925.1 CM039034.1 99.8 True indel: indel (> 5bp) 234416820 236121747 238141790 239843821 NC_060925.1 CM039034.1 99.71 True local misassembly 236126921 236434019 239843822 240151086 NC_060925.1 CM039034.1 99.81 True indel: stretch of mismatches 236434020 236814207 240151087 240531277 NC_060925.1 CM039034.1 99.76 True indel: stretch of mismatches 236814306 238038960 240531376 241756080 NC_060925.1 CM039034.1 99.82 True indel: indel (> 5bp) 238039099 241086354 241756268 244806995 NC_060925.1 CM039034.1 99.49 True local misassembly 241087141 241805141 244807423 245525575 NC_060925.1 CM039034.1 99.78 True local misassembly 241806680 242363645 245526301 246083424 NC_060925.1 CM039034.1 99.78 True local misassembly 242364107 245083493 246083714 248801544 NC_060925.1 CM039034.1 99.61 True local misassembly 245083626 246115550 248801763 249834341 NC_060925.1 CM039034.1 99.18 True local misassembly 246119121 246245676 249837230 249963666 NC_060925.1 CM039034.1 99.18 True relocation, inconsistency = -13780 246250216 246556369 249981986 250286706 NC_060925.1 CM039034.1 98.92 True local misassembly 246555908 247107400 250292485 250840689 NC_060925.1 CM039034.1 98.23 True indel: indel (> 5bp) 247107382 247706690 250840690 251439680 NC_060925.1 CM039034.1 99.78 True indel: indel (> 5bp) 247706926 247707710 251439937 251440721 NC_060925.1 CM039034.1 99.75 True indel: indel (<= 5bp) 247707711 247711027 251440723 251444039 NC_060925.1 CM039034.1 99.73 True indel: indel (<= 5bp) 247711028 247712102 251444041 251445115 NC_060925.1 CM039034.1 99.63 True indel: indel (<= 5bp) 247712104 247712870 251445116 251445882 NC_060925.1 CM039034.1 99.87 True indel: indel (<= 5bp) 247712871 247718838 251445885 251451852 NC_060925.1 CM039034.1 99.75 True indel: indel (<= 5bp) 247718842 247719981 251451853 251452992 NC_060925.1 CM039034.1 99.74 True indel: indel (<= 5bp) 247719982 247721657 251452994 251454669 NC_060925.1 CM039034.1 99.46 True indel: indel (<= 5bp) 247721658 247730026 251454671 251463039 NC_060925.1 CM039034.1 99.47 True indel: indel (<= 5bp) 247730219 247732058 251463237 251465076 NC_060925.1 CM039034.1 99.29 True local misassembly 247733438 247737635 251466013 251470210 NC_060925.1 CM039034.1 99.29 True indel: indel (> 5bp) 247737659 247738169 251470211 251470721 NC_060925.1 CM039034.1 99.02 True indel: indel (<= 5bp) 247738221 247739139 251470777 251471695 NC_060925.1 CM039034.1 99.02 True indel: indel (<= 5bp) 247739143 247740080 251471696 251472633 NC_060925.1 CM039034.1 99.04 True indel: indel (<= 5bp) 247740380 247742105 251472935 251474660 NC_060925.1 CM039034.1 99.48 True indel: indel (<= 5bp) 247742106 247745127 251474665 251477686 NC_060925.1 CM039034.1 99.34 True indel: indel (<= 5bp) 247745129 247745854 251477687 251478412 NC_060925.1 CM039034.1 99.45 True indel: indel (<= 5bp) 247745856 247747011 251478413 251479568 NC_060925.1 CM039034.1 99.31 True indel: indel (<= 5bp) 247747030 247748900 251479585 251481455 NC_060925.1 CM039034.1 99.79 True indel: indel (<= 5bp) 247748901 247751366 251481457 251483922 NC_060925.1 CM039034.1 99.59 True indel: indel (<= 5bp) 247751367 247754174 251483927 251486734 NC_060925.1 CM039034.1 99.64 True indel: indel (<= 5bp) 247754176 247756281 251486735 251488840 NC_060925.1 CM039034.1 99.81 True indel: indel (> 5bp) 247756282 247762480 251488851 251495049 NC_060925.1 CM039034.1 99.76 True indel: indel (<= 5bp) 247762481 247774974 251495051 251507544 NC_060925.1 CM039034.1 99.64 True indel: indel (<= 5bp) 247774978 247779902 251507545 251512469 NC_060925.1 CM039034.1 99.84 True local misassembly 247780552 247781484 251513128 251514060 NC_060925.1 CM039034.1 99.79 True indel: indel (> 5bp) 247781736 247783315 251514295 251515874 NC_060925.1 CM039034.1 99.75 True indel: indel (> 5bp) 247783322 247784899 251515875 251517452 NC_060925.1 CM039034.1 99.81 True indel: indel (<= 5bp) 247784900 247785815 251517454 251518369 NC_060925.1 CM039034.1 99.67 True indel: indel (<= 5bp) 247785816 247788035 251518374 251520593 NC_060925.1 CM039034.1 99.86 True local misassembly 247788481 247793568 251521123 251526210 NC_060925.1 CM039034.1 99.45 True local misassembly 247794177 247796478 251526828 251529129 NC_060925.1 CM039034.1 99.52 True indel: stretch of mismatches 247796505 247803083 251529156 251535734 NC_060925.1 CM039034.1 99.76 True indel: indel (<= 5bp) 247803084 247808300 251535736 251540952 NC_060925.1 CM039034.1 99.75 True indel: indel (<= 5bp) 247808302 247808976 251540953 251541627 NC_060925.1 CM039034.1 100.0 True indel: indel (<= 5bp) 247808980 247809501 251541628 251542149 NC_060925.1 CM039034.1 99.43 True local misassembly 247809664 247814126 251544148 251548610 NC_060925.1 CM039034.1 99.44 True indel: stretch of mismatches 247814282 247820435 251548766 251554919 NC_060925.1 CM039034.1 99.55 True indel: indel (> 5bp) 247820443 247823003 251554920 251557480 NC_060925.1 CM039034.1 99.49 True indel: indel (<= 5bp) 247823005 247823735 251557481 251558211 NC_060925.1 CM039034.1 99.32 True indel: indel (<= 5bp) 247823736 247824796 251558213 251559273 NC_060925.1 CM039034.1 99.62 True indel: indel (<= 5bp) 247824799 247829027 251559274 251563502 NC_060925.1 CM039034.1 99.69 True relocation, inconsistency = -7898 247830189 247833512 251572562 251575885 NC_060925.1 CM039034.1 99.79 True relocation, inconsistency = 18905 247852662 248083850 251576130 251807395 NC_060925.1 CM039034.1 99.4 True local misassembly 248086376 248113914 251809989 251837182 NC_060925.1 CM039034.1 97.86 True local misassembly 248114304 248115097 251837326 251838098 NC_060925.1 CM039034.1 95.47 True local misassembly 248115151 248191016 251838261 251913580 NC_060925.1 CM039034.1 99.19 True local misassembly 248191826 248383457 251914664 252106039 NC_060925.1 CM039034.1 99.63 True local misassembly 248383570 248384131 252106310 252106871 NC_060925.1 CM039034.1 99.11 True CONTIG CM039034.1 252114745 misassembled 3350 201191 3759 201406 NC_060926.1 CM039035.1 98.94 True local misassembly 207694 424369 207618 425070 NC_060926.1 CM039035.1 98.77 True local misassembly 425374 440690 425700 440698 NC_060926.1 CM039035.1 95.89 True local misassembly 440785 1056170 440699 1060360 NC_060926.1 CM039035.1 98.59 True local misassembly 1056712 1221405 1060901 1225697 NC_060926.1 CM039035.1 98.34 True local misassembly 1222228 1222841 1228516 1229129 NC_060926.1 CM039035.1 97.56 True local misassembly 1222842 1223872 1229550 1230580 NC_060926.1 CM039035.1 96.61 True local misassembly 1223873 1224746 1231001 1231874 NC_060926.1 CM039035.1 97.14 True local misassembly 1225012 1225915 1233540 1234443 NC_060926.1 CM039035.1 98.01 True local misassembly 1225866 1528641 1235158 1536442 NC_060926.1 CM039035.1 98.71 True local misassembly 1529295 1534677 1537212 1542504 NC_060926.1 CM039035.1 97.92 True local misassembly 1540807 1574192 1546530 1579493 NC_060926.1 CM039035.1 97.91 True local misassembly 1574327 3712778 1579515 3718453 NC_060926.1 CM039035.1 99.34 True indel: indel (> 5bp) 3713017 7210733 3718616 7221552 NC_060926.1 CM039035.1 99.43 True indel: indel (<= 5bp) 7211039 7901976 7221860 7912989 NC_060926.1 CM039035.1 99.73 True indel: indel (> 5bp) 7902038 9424675 7913119 9435857 NC_060926.1 CM039035.1 99.86 True local misassembly 9424977 10026379 9436280 10039179 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 10026706 10427818 10039566 10440736 NC_060926.1 CM039035.1 99.7 True local misassembly 10428684 10984450 10444035 11000324 NC_060926.1 CM039035.1 99.37 True local misassembly 10986354 11144834 11001709 11160476 NC_060926.1 CM039035.1 99.61 True local misassembly 11146108 11911659 11160657 11926870 NC_060926.1 CM039035.1 99.68 True fake: not a misassembly (possible transposable element) 11877816 11878759 11929836 11930773 NC_060926.1 CM039035.1 95.67 True fake: not a misassembly (possible transposable element) 11911658 13848723 11930774 13867087 NC_060926.1 CM039035.1 99.73 True local misassembly 13848749 15643220 13867257 15661271 NC_060926.1 CM039035.1 99.78 True indel: indel (> 5bp) 15643498 18327463 15661578 18345209 NC_060926.1 CM039035.1 99.83 True local misassembly 18327711 23882029 18345607 23906054 NC_060926.1 CM039035.1 99.68 True local misassembly 23881488 25669879 23906055 25697432 NC_060926.1 CM039035.1 99.66 True indel: indel (<= 5bp) 25670063 29016960 25697614 29043819 NC_060926.1 CM039035.1 99.81 True indel: indel (> 5bp) 29016981 29874464 29043894 29901769 NC_060926.1 CM039035.1 99.69 True local misassembly 29875285 31946236 29902137 31972449 NC_060926.1 CM039035.1 99.77 True indel: indel (<= 5bp) 31946614 32985596 31972825 33011499 NC_060926.1 CM039035.1 99.8 True local misassembly 32985764 34818993 33011552 34844168 NC_060926.1 CM039035.1 99.57 True indel: indel (> 5bp) 34819021 34821854 34844209 34847005 NC_060926.1 CM039035.1 97.61 True local misassembly 34822315 55398619 34847556 55432640 NC_060926.1 CM039035.1 99.63 True indel: indel (<= 5bp) 55398720 60513126 55432743 60541369 NC_060926.1 CM039035.1 99.72 True indel: indel (> 5bp) 60513218 62645176 60541520 62673114 NC_060926.1 CM039035.1 99.8 True indel: indel (<= 5bp) 62645267 67916130 62673204 67946366 NC_060926.1 CM039035.1 99.76 True local misassembly 67917253 68463627 67946496 68492702 NC_060926.1 CM039035.1 99.74 True local misassembly 68464211 70445930 68493266 70474874 NC_060926.1 CM039035.1 99.84 True local misassembly 70446023 71061978 70476749 71092377 NC_060926.1 CM039035.1 99.81 True indel: stretch of mismatches 71062066 73799360 71092465 73829478 NC_060926.1 CM039035.1 99.89 True local misassembly 73804258 77412766 73829479 77437368 NC_060926.1 CM039035.1 99.79 True indel: indel (> 5bp) 77412851 82187304 77437445 82218324 NC_060926.1 CM039035.1 99.66 True indel: indel (> 5bp) 82187563 84198362 82218551 84229756 NC_060926.1 CM039035.1 99.82 True local misassembly 84198736 86915929 84230022 86947128 NC_060926.1 CM039035.1 99.88 True local misassembly 86916486 87418506 86947598 87447153 NC_060926.1 CM039035.1 98.16 True local misassembly 87429188 87429802 87458071 87458685 NC_060926.1 CM039035.1 99.84 True local misassembly 87430404 87431735 87459132 87460463 NC_060926.1 CM039035.1 99.77 True local misassembly 87437342 87437939 87466566 87467149 NC_060926.1 CM039035.1 95.68 True local misassembly 87440641 88192377 87468671 88220928 NC_060926.1 CM039035.1 99.76 True local misassembly 88193262 88841773 88221452 88869942 NC_060926.1 CM039035.1 99.9 True relocation, inconsistency = 401412 89243189 89373979 88869946 89000756 NC_060926.1 CM039035.1 99.3 True relocation, inconsistency = 625691 89999671 90369756 89370938 89000757 NC_060926.1 CM039035.1 99.77 True relocation, inconsistency = 50591 89748787 89949079 89568645 89370939 NC_060926.1 CM039035.1 98.37 True local misassembly 89744322 89748664 89573798 89569457 NC_060926.1 CM039035.1 99.75 True local misassembly 89743205 89743772 89575600 89575033 NC_060926.1 CM039035.1 99.12 True indel: indel (> 5bp) 89742548 89743204 89576274 89575618 NC_060926.1 CM039035.1 99.7 True indel: indel (<= 5bp) 89741849 89742547 89576974 89576276 NC_060926.1 CM039035.1 99.28 True indel: indel (> 5bp) 89740724 89741810 89578116 89577030 NC_060926.1 CM039035.1 98.44 True relocation, inconsistency = -13777 89752187 89754113 89580430 89578504 NC_060926.1 CM039035.1 99.79 True indel: indel (> 5bp) 89751553 89752135 89581013 89580431 NC_060926.1 CM039035.1 99.43 True relocation, inconsistency = 11886 89728898 89739666 89592004 89581014 NC_060926.1 CM039035.1 96.12 True relocation, inconsistency = 248753 89990290 89990874 89593875 89594459 NC_060926.1 CM039035.1 98.97 True relocation, inconsistency = 246554 89729654 89739666 89608502 89598529 NC_060926.1 CM039035.1 99.42 True local misassembly 89195674 89729401 90144798 89608869 NC_060926.1 CM039035.1 99.07 True relocation, inconsistency = 822201 90551603 90715310 90144799 90308485 NC_060926.1 CM039035.1 99.66 True indel: indel (<= 5bp) 90715419 90844000 90308595 90437135 NC_060926.1 CM039035.1 99.3 True relocation, inconsistency = 862639 91707977 91708841 90439337 90438473 NC_060926.1 CM039035.1 99.42 True indel: indel (> 5bp) 91706651 91707976 90440672 90439347 NC_060926.1 CM039035.1 99.32 True indel: indel (<= 5bp) 91705937 91706650 90441387 90440674 NC_060926.1 CM039035.1 99.44 True local misassembly 91703966 91705124 90443345 90442187 NC_060926.1 CM039035.1 99.83 True indel: stretch of mismatches 91702534 91703514 90444777 90443797 NC_060926.1 CM039035.1 99.29 True local misassembly 91701104 91701861 90446199 90445442 NC_060926.1 CM039035.1 99.74 True local misassembly 91697083 91699289 90450211 90448005 NC_060926.1 CM039035.1 99.86 True local misassembly 91695973 91697082 90451460 90450351 NC_060926.1 CM039035.1 99.37 True indel: indel (<= 5bp) 91695394 91695972 90452040 90451462 NC_060926.1 CM039035.1 99.83 True local misassembly 91598350 91694063 90553029 90455284 NC_060926.1 CM039035.1 96.71 True relocation, inconsistency = 134214 91462770 91463770 90554395 90553395 NC_060926.1 CM039035.1 96.3 True relocation, inconsistency = 397804 91064444 91064965 90554396 90554917 NC_060926.1 CM039035.1 97.55 True indel: indel (> 5bp) 91065015 91065735 90554918 90555638 NC_060926.1 CM039035.1 97.3 True relocation, inconsistency = 338078 91403814 91406239 90555639 90558064 NC_060926.1 CM039035.1 98.64 True local misassembly 91406240 91407314 90559455 90560529 NC_060926.1 CM039035.1 99.63 True local misassembly 91407315 91417484 90560651 90570820 NC_060926.1 CM039035.1 99.52 True indel: indel (> 5bp) 91417485 91418354 90570844 90571713 NC_060926.1 CM039035.1 99.43 True indel: indel (> 5bp) 91418355 91422580 90571763 90575988 NC_060926.1 CM039035.1 99.57 True indel: indel (> 5bp) 91422607 91427760 90575989 90581142 NC_060926.1 CM039035.1 99.5 True indel: indel (> 5bp) 91427761 91434713 90581166 90588118 NC_060926.1 CM039035.1 99.45 True indel: indel (<= 5bp) 91434714 91437830 90588124 90591240 NC_060926.1 CM039035.1 99.07 True relocation, inconsistency = 17158 91455013 91461243 90591265 90597421 NC_060926.1 CM039035.1 95.86 True fake: not a misassembly (possible transposable element) 91483532 91487312 90599483 90603282 NC_060926.1 CM039035.1 97.5 True fake: not a misassembly (possible transposable element) 91463414 91464830 90603401 90604817 NC_060926.1 CM039035.1 97.32 True indel: indel (> 5bp) 91464981 91465748 90604934 90605701 NC_060926.1 CM039035.1 96.88 True indel: indel (<= 5bp) 91465754 91467255 90605702 90607203 NC_060926.1 CM039035.1 96.87 True indel: indel (> 5bp) 91467256 91467827 90607253 90607824 NC_060926.1 CM039035.1 97.38 True local misassembly 91467975 91468839 90607825 90608689 NC_060926.1 CM039035.1 97.46 True local misassembly 91469576 91484343 90608972 90623677 NC_060926.1 CM039035.1 95.36 True relocation, inconsistency = 33015 91518088 91518706 90624407 90625025 NC_060926.1 CM039035.1 96.28 True indel: indel (> 5bp) 91518761 91519702 90625162 90626103 NC_060926.1 CM039035.1 97.13 True indel: indel (> 5bp) 91520093 91522665 90626481 90629053 NC_060926.1 CM039035.1 97.59 True indel: indel (> 5bp) 91522689 91523224 90629054 90629589 NC_060926.1 CM039035.1 98.51 True indel: indel (<= 5bp) 91523225 91523761 90629591 90630127 NC_060926.1 CM039035.1 98.14 True relocation, inconsistency = -60778 91463122 91464464 90630266 90631608 NC_060926.1 CM039035.1 97.84 True indel: indel (> 5bp) 91464997 91465748 90632108 90632859 NC_060926.1 CM039035.1 96.54 True indel: indel (> 5bp) 91465764 91467255 90632860 90634351 NC_060926.1 CM039035.1 96.85 True indel: indel (> 5bp) 91467256 91467827 90634401 90634972 NC_060926.1 CM039035.1 97.2 True local misassembly 91467975 91468839 90634973 90635837 NC_060926.1 CM039035.1 97.46 True local misassembly 91469576 91470158 90636120 90636702 NC_060926.1 CM039035.1 96.05 True indel: indel (> 5bp) 91470235 91470844 90636703 90637312 NC_060926.1 CM039035.1 96.89 True indel: indel (> 5bp) 91470845 91472202 90637385 90638742 NC_060926.1 CM039035.1 97.13 True indel: indel (> 5bp) 91472277 91474859 90638743 90641325 NC_060926.1 CM039035.1 98.45 True indel: indel (> 5bp) 91474883 91477437 90641326 90643880 NC_060926.1 CM039035.1 98.63 True indel: indel (> 5bp) 91477448 91478732 90643881 90645165 NC_060926.1 CM039035.1 97.59 True indel: indel (> 5bp) 91479157 91479868 90645575 90646286 NC_060926.1 CM039035.1 98.17 True local misassembly 91480171 91481402 90646287 90647518 NC_060926.1 CM039035.1 97.89 True indel: indel (> 5bp) 91481426 91482525 90647519 90648618 NC_060926.1 CM039035.1 99.0 True local misassembly 91482526 91484380 90648717 90650571 NC_060926.1 CM039035.1 97.95 True indel: indel (> 5bp) 91484404 91488033 90650572 90654201 NC_060926.1 CM039035.1 98.73 True local misassembly 91488726 91496591 90654202 90662067 NC_060926.1 CM039035.1 99.2 True relocation, inconsistency = 8001 91505533 91507146 90663008 90664621 NC_060926.1 CM039035.1 97.89 True indel: stretch of mismatches 91507271 91508631 90664746 90666106 NC_060926.1 CM039035.1 98.31 True indel: indel (> 5bp) 91508984 91509900 90666470 90667386 NC_060926.1 CM039035.1 97.06 True indel: indel (<= 5bp) 91509901 91511413 90667392 90668904 NC_060926.1 CM039035.1 96.43 True relocation, inconsistency = 362302 91146452 91147560 90670051 90668943 NC_060926.1 CM039035.1 98.47 True indel: indel (> 5bp) 91138161 91146263 90678267 90670169 NC_060926.1 CM039035.1 95.84 True relocation, inconsistency = -99639 91236342 91237353 90679725 90678714 NC_060926.1 CM039035.1 98.12 True indel: indel (> 5bp) 91234758 91236184 90681394 90679968 NC_060926.1 CM039035.1 97.83 True indel: indel (> 5bp) 91233380 91234730 90682745 90681395 NC_060926.1 CM039035.1 98.08 True local misassembly 91225473 91226599 90683872 90682746 NC_060926.1 CM039035.1 98.76 True indel: indel (> 5bp) 91224226 91225472 90685168 90683922 NC_060926.1 CM039035.1 97.19 True indel: indel (> 5bp) 91223214 91224225 90686206 90685195 NC_060926.1 CM039035.1 98.02 True indel: indel (> 5bp) 91221630 91223069 90687875 90686436 NC_060926.1 CM039035.1 97.99 True indel: indel (> 5bp) 91220318 91221566 90689258 90688010 NC_060926.1 CM039035.1 98.16 True local misassembly 91225481 91226665 90690443 90689259 NC_060926.1 CM039035.1 98.82 True indel: indel (> 5bp) 91224231 91225480 90691742 90690493 NC_060926.1 CM039035.1 98.32 True indel: indel (> 5bp) 91223057 91223909 90692908 90692056 NC_060926.1 CM039035.1 98.24 True indel: indel (> 5bp) 91221630 91223056 90694358 90692932 NC_060926.1 CM039035.1 98.53 True indel: indel (<= 5bp) 91220318 91221628 90695669 90694359 NC_060926.1 CM039035.1 98.25 True local misassembly 91225481 91226665 90696854 90695670 NC_060926.1 CM039035.1 98.9 True indel: indel (> 5bp) 91224231 91225114 90698130 90697247 NC_060926.1 CM039035.1 98.64 True local misassembly 91223057 91223559 90699294 90698792 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90700744 90699318 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 90702055 90700745 NC_060926.1 CM039035.1 98.32 True local misassembly 91225481 91226665 90703240 90702056 NC_060926.1 CM039035.1 98.65 True indel: indel (> 5bp) 91224231 91225480 90704539 90703290 NC_060926.1 CM039035.1 98.32 True local misassembly 91223057 91223559 90705703 90705201 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90707153 90705727 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 90708464 90707154 NC_060926.1 CM039035.1 98.17 True local misassembly 91225481 91226665 90709649 90708465 NC_060926.1 CM039035.1 98.65 True indel: indel (> 5bp) 91224231 91225114 90710925 90710042 NC_060926.1 CM039035.1 98.64 True local misassembly 91223057 91223559 90712089 90711587 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90713539 90712113 NC_060926.1 CM039035.1 98.18 True indel: indel (<= 5bp) 91220318 91221628 90714850 90713540 NC_060926.1 CM039035.1 98.32 True local misassembly 91225481 91226665 90716035 90714851 NC_060926.1 CM039035.1 98.82 True indel: indel (> 5bp) 91224231 91225480 90717334 90716085 NC_060926.1 CM039035.1 98.48 True local misassembly 91223057 91223559 90718498 90717996 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90719948 90718522 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 90721259 90719949 NC_060926.1 CM039035.1 98.25 True local misassembly 91225481 91226665 90722444 90721260 NC_060926.1 CM039035.1 98.9 True local misassembly 91224231 91224982 90723766 90723015 NC_060926.1 CM039035.1 98.27 True local misassembly 91223057 91223559 90724930 90724428 NC_060926.1 CM039035.1 98.01 True local misassembly 91228243 91229669 90726380 90724954 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91226865 91228241 90727757 90726381 NC_060926.1 CM039035.1 98.33 True local misassembly 91221630 91223062 90729619 90728187 NC_060926.1 CM039035.1 98.26 True indel: indel (<= 5bp) 91220318 91221628 90730930 90729620 NC_060926.1 CM039035.1 98.25 True local misassembly 91218863 91220052 90732120 90730931 NC_060926.1 CM039035.1 98.74 True indel: indel (> 5bp) 91217939 91218862 90733093 90732170 NC_060926.1 CM039035.1 98.16 True indel: indel (> 5bp) 91216519 91217641 90734534 90733412 NC_060926.1 CM039035.1 98.49 True indel: indel (> 5bp) 91215092 91216518 90735984 90734558 NC_060926.1 CM039035.1 98.6 True indel: indel (<= 5bp) 91213776 91215090 90737299 90735985 NC_060926.1 CM039035.1 98.25 True local misassembly 91212330 91213510 90738480 90737300 NC_060926.1 CM039035.1 99.07 True indel: indel (> 5bp) 91211080 91212329 90739779 90738530 NC_060926.1 CM039035.1 98.16 True local misassembly 91209906 91210408 90740943 90740441 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91208479 91209905 90742393 90740967 NC_060926.1 CM039035.1 98.46 True indel: indel (<= 5bp) 91207217 91208477 90743654 90742394 NC_060926.1 CM039035.1 98.49 True local misassembly 91205553 91206974 90745076 90743655 NC_060926.1 CM039035.1 98.59 True indel: indel (> 5bp) 91203586 91205241 90747070 90745415 NC_060926.1 CM039035.1 98.37 True indel: indel (> 5bp) 91202309 91203390 90748303 90747222 NC_060926.1 CM039035.1 97.87 True indel: indel (> 5bp) 91201173 91202298 90749429 90748304 NC_060926.1 CM039035.1 98.4 True local misassembly 91199194 91200419 90751039 90749814 NC_060926.1 CM039035.1 98.61 True indel: indel (> 5bp) 91196897 91199193 90753385 90751089 NC_060926.1 CM039035.1 98.48 True indel: indel (> 5bp) 91192628 91196824 90757582 90753386 NC_060926.1 CM039035.1 98.81 True indel: indel (> 5bp) 91191408 91192627 90758851 90757632 NC_060926.1 CM039035.1 97.87 True indel: indel (> 5bp) 91190437 91191052 90759876 90759261 NC_060926.1 CM039035.1 98.38 True indel: indel (> 5bp) 91189102 91189965 90761205 90760342 NC_060926.1 CM039035.1 97.8 True local misassembly 91187646 91189101 90762880 90761425 NC_060926.1 CM039035.1 96.7 True relocation, inconsistency = -27453 91189102 91215043 90788531 90762936 NC_060926.1 CM039035.1 95.23 True relocation, inconsistency = -180972 91362937 91369794 90795659 90788811 NC_060926.1 CM039035.1 97.96 True local misassembly 91353711 91361800 90805130 90797070 NC_060926.1 CM039035.1 98.07 True relocation, inconsistency = 73942 91279016 91279768 90805883 90805131 NC_060926.1 CM039035.1 97.9 True indel: indel (> 5bp) 91277625 91279015 90807300 90805910 NC_060926.1 CM039035.1 98.71 True indel: indel (> 5bp) 91276873 91277624 90808075 90807324 NC_060926.1 CM039035.1 98.67 True indel: indel (> 5bp) 91275699 91276551 90809241 90808389 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91274272 91275698 90810691 90809265 NC_060926.1 CM039035.1 98.04 True local misassembly 91266367 91267677 90812002 90810692 NC_060926.1 CM039035.1 97.79 True local misassembly 91258324 91259508 90813187 90812003 NC_060926.1 CM039035.1 98.65 True local misassembly 91250510 91251759 90814486 90813237 NC_060926.1 CM039035.1 98.4 True indel: indel (> 5bp) 91249336 91250188 90815652 90814800 NC_060926.1 CM039035.1 98.24 True indel: indel (> 5bp) 91247909 91249335 90817102 90815676 NC_060926.1 CM039035.1 98.67 True indel: indel (<= 5bp) 91246597 91247907 90818413 90817103 NC_060926.1 CM039035.1 98.17 True local misassembly 91251760 91252944 90819598 90818414 NC_060926.1 CM039035.1 98.73 True indel: indel (> 5bp) 91250510 91251759 90820897 90819648 NC_060926.1 CM039035.1 98.48 True indel: indel (> 5bp) 91249336 91250188 90822063 90821211 NC_060926.1 CM039035.1 98.24 True indel: indel (> 5bp) 91247909 91249335 90823513 90822087 NC_060926.1 CM039035.1 98.67 True indel: indel (<= 5bp) 91246597 91247907 90824824 90823514 NC_060926.1 CM039035.1 98.25 True local misassembly 91251760 91252944 90826009 90824825 NC_060926.1 CM039035.1 98.73 True indel: indel (> 5bp) 91250510 91251759 90827308 90826059 NC_060926.1 CM039035.1 98.24 True indel: indel (> 5bp) 91249336 91250188 90828474 90827622 NC_060926.1 CM039035.1 98.24 True indel: indel (> 5bp) 91247909 91249335 90829924 90828498 NC_060926.1 CM039035.1 98.53 True indel: indel (<= 5bp) 91246597 91247907 90831235 90829925 NC_060926.1 CM039035.1 98.25 True local misassembly 91251760 91252944 90832420 90831236 NC_060926.1 CM039035.1 98.82 True indel: indel (> 5bp) 91250510 91251393 90833696 90832813 NC_060926.1 CM039035.1 98.64 True local misassembly 91249336 91249838 90834860 90834358 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91247909 91249335 90836310 90834884 NC_060926.1 CM039035.1 98.46 True indel: indel (<= 5bp) 91246597 91247907 90837621 90836311 NC_060926.1 CM039035.1 98.25 True local misassembly 91251760 91252944 90838806 90837622 NC_060926.1 CM039035.1 98.82 True indel: indel (> 5bp) 91250510 91251759 90840105 90838856 NC_060926.1 CM039035.1 98.4 True local misassembly 91249336 91249838 90841269 90840767 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91247909 91249335 90842719 90841293 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91246597 91247907 90844030 90842720 NC_060926.1 CM039035.1 98.25 True local misassembly 91238609 91239789 90845215 90844035 NC_060926.1 CM039035.1 98.81 True indel: indel (> 5bp) 91237359 91238608 90846514 90845265 NC_060926.1 CM039035.1 98.16 True local misassembly 91236185 91236687 90847678 90847176 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91234758 91236184 90849128 90847702 NC_060926.1 CM039035.1 98.46 True indel: indel (<= 5bp) 91233446 91234756 90850439 90849129 NC_060926.1 CM039035.1 98.17 True local misassembly 91225481 91226665 90851624 90850440 NC_060926.1 CM039035.1 98.65 True indel: indel (> 5bp) 91224231 91225480 90852923 90851674 NC_060926.1 CM039035.1 98.48 True local misassembly 91223057 91223559 90854087 90853585 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90855537 90854111 NC_060926.1 CM039035.1 98.32 True indel: indel (<= 5bp) 91220318 91221628 90856848 90855538 NC_060926.1 CM039035.1 98.25 True local misassembly 91225481 91226665 90858033 90856849 NC_060926.1 CM039035.1 98.65 True indel: indel (> 5bp) 91224231 91225114 90859309 90858426 NC_060926.1 CM039035.1 98.64 True local misassembly 91223057 91223559 90860473 90859971 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90861923 90860497 NC_060926.1 CM039035.1 98.32 True indel: indel (<= 5bp) 91220318 91221628 90863234 90861924 NC_060926.1 CM039035.1 98.17 True local misassembly 91225481 91226665 90864419 90863235 NC_060926.1 CM039035.1 98.9 True indel: indel (> 5bp) 91224231 91225114 90865695 90864812 NC_060926.1 CM039035.1 98.64 True local misassembly 91223057 91223559 90866859 90866357 NC_060926.1 CM039035.1 97.81 True indel: indel (> 5bp) 91221630 91223056 90868309 90866883 NC_060926.1 CM039035.1 98.32 True indel: indel (<= 5bp) 91220318 91221628 90869620 90868310 NC_060926.1 CM039035.1 98.17 True local misassembly 91212330 91213510 90870805 90869625 NC_060926.1 CM039035.1 99.07 True indel: indel (> 5bp) 91211080 91212329 90872104 90870855 NC_060926.1 CM039035.1 98.24 True local misassembly 91209906 91210408 90873268 90872766 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91208599 91209905 90874598 90873292 NC_060926.1 CM039035.1 98.39 True relocation, inconsistency = -28581 91236185 91236687 90875593 90875091 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91234758 91236184 90877043 90875617 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91233446 91234756 90878354 90877044 NC_060926.1 CM039035.1 98.17 True local misassembly 91225481 91226665 90879539 90878355 NC_060926.1 CM039035.1 98.9 True local misassembly 91224231 91224982 90880861 90880110 NC_060926.1 CM039035.1 98.27 True local misassembly 91223057 91223559 90882025 90881523 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90883475 90882049 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 90884786 90883476 NC_060926.1 CM039035.1 98.25 True local misassembly 91225481 91226665 90885971 90884787 NC_060926.1 CM039035.1 98.9 True local misassembly 91224231 91224982 90887293 90886542 NC_060926.1 CM039035.1 98.27 True local misassembly 91223057 91223559 90888457 90887955 NC_060926.1 CM039035.1 98.01 True indel: indel (> 5bp) 91221630 91223056 90889907 90888481 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 90891218 90889908 NC_060926.1 CM039035.1 98.25 True local misassembly 91212330 91213510 90892403 90891223 NC_060926.1 CM039035.1 98.98 True indel: indel (> 5bp) 91211080 91212329 90893702 90892453 NC_060926.1 CM039035.1 98.24 True local misassembly 91209906 91210408 90894866 90894364 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91208479 91209905 90896316 90894890 NC_060926.1 CM039035.1 98.46 True indel: indel (<= 5bp) 91207217 91208477 90897577 90896317 NC_060926.1 CM039035.1 98.49 True local misassembly 91199038 91200459 90898999 90897578 NC_060926.1 CM039035.1 98.87 True indel: indel (<= 5bp) 91196897 91199037 90901144 90899004 NC_060926.1 CM039035.1 98.51 True indel: indel (> 5bp) 91195398 91196824 90902571 90901145 NC_060926.1 CM039035.1 97.9 True indel: indel (<= 5bp) 91194136 91195396 90903832 90902572 NC_060926.1 CM039035.1 97.78 True local misassembly 91199038 91200459 90905254 90903833 NC_060926.1 CM039035.1 98.8 True indel: indel (<= 5bp) 91196897 91199037 90907399 90905259 NC_060926.1 CM039035.1 98.55 True indel: indel (> 5bp) 91191722 91196824 90912502 90907400 NC_060926.1 CM039035.1 98.9 True indel: indel (> 5bp) 91190376 91191695 90913822 90912503 NC_060926.1 CM039035.1 98.96 True relocation, inconsistency = 143245 91042442 91047130 90918511 90913823 NC_060926.1 CM039035.1 99.02 True indel: indel (<= 5bp) 91039879 91042363 90921072 90918588 NC_060926.1 CM039035.1 98.75 True relocation, inconsistency = -184075 91190353 91223858 90954059 90921168 NC_060926.1 CM039035.1 95.6 True relocation, inconsistency = 150933 91038783 91039419 90954696 90954060 NC_060926.1 CM039035.1 98.59 True local misassembly 91037551 91038309 90955983 90955225 NC_060926.1 CM039035.1 97.23 True indel: indel (> 5bp) 91036942 91037550 90956602 90955994 NC_060926.1 CM039035.1 97.37 True indel: indel (> 5bp) 91036248 91036941 90957322 90956629 NC_060926.1 CM039035.1 98.15 True relocation, inconsistency = -10002 91042405 91046249 90961167 90957323 NC_060926.1 CM039035.1 99.04 True local misassembly 91039879 91042363 90963887 90961403 NC_060926.1 CM039035.1 98.79 True local misassembly 91038783 91039419 90964608 90963972 NC_060926.1 CM039035.1 98.9 True local misassembly 91037551 91038309 90965895 90965137 NC_060926.1 CM039035.1 97.36 True indel: indel (> 5bp) 91036931 91037550 90966525 90965906 NC_060926.1 CM039035.1 97.74 True indel: indel (> 5bp) 91036238 91036930 90967244 90966552 NC_060926.1 CM039035.1 98.27 True local misassembly 91034777 91036016 90969068 90967829 NC_060926.1 CM039035.1 98.15 True indel: indel (<= 5bp) 91033537 91034487 90970311 90969361 NC_060926.1 CM039035.1 96.85 True indel: indel (<= 5bp) 91032363 91033531 90971480 90970312 NC_060926.1 CM039035.1 97.78 True indel: indel (> 5bp) 91031395 91032339 90972425 90971481 NC_060926.1 CM039035.1 98.84 True indel: indel (> 5bp) 91029067 91031257 90974760 90972570 NC_060926.1 CM039035.1 97.72 True indel: indel (> 5bp) 91028535 91029056 90975282 90974761 NC_060926.1 CM039035.1 99.04 True indel: indel (> 5bp) 91028034 91028534 90975806 90975306 NC_060926.1 CM039035.1 96.81 True indel: indel (> 5bp) 91027176 91027822 90976686 90976040 NC_060926.1 CM039035.1 96.91 True relocation, inconsistency = -340571 91365105 91367621 90979342 90976812 NC_060926.1 CM039035.1 97.12 True relocation, inconsistency = 20521 91343489 91344583 90980436 90979343 NC_060926.1 CM039035.1 98.21 True local misassembly 91341939 91342569 90981815 90981185 NC_060926.1 CM039035.1 97.62 True indel: indel (> 5bp) 91340371 91341762 90983411 90982020 NC_060926.1 CM039035.1 97.63 True indel: indel (> 5bp) 91339074 91340292 90984630 90983412 NC_060926.1 CM039035.1 97.29 True relocation, inconsistency = 227833 91108064 91110604 90987818 90985267 NC_060926.1 CM039035.1 97.54 True relocation, inconsistency = -15581 91122242 91123562 90989221 90987901 NC_060926.1 CM039035.1 97.27 True local misassembly 91119198 91121738 90992270 90989742 NC_060926.1 CM039035.1 96.6 True relocation, inconsistency = -10970 91128765 91130110 90993673 90992328 NC_060926.1 CM039035.1 98.22 True local misassembly 91126346 91128261 90996109 90994194 NC_060926.1 CM039035.1 98.07 True indel: indel (> 5bp) 91125295 91126320 90997135 90996110 NC_060926.1 CM039035.1 98.25 True local misassembly 91123691 91124744 90998692 90997639 NC_060926.1 CM039035.1 97.06 True local misassembly 91121940 91123567 91000320 90998693 NC_060926.1 CM039035.1 97.42 True indel: indel (> 5bp) 91119198 91121574 91003017 91000630 NC_060926.1 CM039035.1 97.62 True fake: not a misassembly (possible transposable element) 91106455 91107587 91004304 91003172 NC_060926.1 CM039035.1 97.44 True fake: not a misassembly (possible transposable element) 91115928 91117015 91006080 91004993 NC_060926.1 CM039035.1 97.98 True indel: indel (> 5bp) 91115179 91115927 91006852 91006104 NC_060926.1 CM039035.1 97.06 True indel: indel (> 5bp) 91113706 91115178 91008340 91006868 NC_060926.1 CM039035.1 98.3 True indel: indel (> 5bp) 91112557 91113610 91009439 91008386 NC_060926.1 CM039035.1 97.44 True local misassembly 91110806 91112433 91011067 91009440 NC_060926.1 CM039035.1 97.48 True indel: indel (> 5bp) 91108064 91110440 91013764 91011377 NC_060926.1 CM039035.1 97.7 True local misassembly 91111108 91112428 91015167 91013847 NC_060926.1 CM039035.1 97.2 True local misassembly 91108064 91110604 91018239 91015688 NC_060926.1 CM039035.1 97.42 True local misassembly 91101784 91102916 91019526 91018394 NC_060926.1 CM039035.1 97.44 True local misassembly 91098660 91101210 91022762 91020215 NC_060926.1 CM039035.1 96.27 True relocation, inconsistency = -142662 91239850 91241321 91024234 91022763 NC_060926.1 CM039035.1 98.12 True local misassembly 91238588 91239230 91025248 91024606 NC_060926.1 CM039035.1 98.76 True indel: indel (> 5bp) 91237354 91238587 91026531 91025298 NC_060926.1 CM039035.1 96.76 True indel: indel (> 5bp) 91236185 91237353 91027710 91026542 NC_060926.1 CM039035.1 98.2 True indel: indel (> 5bp) 91234775 91235811 91029093 91028057 NC_060926.1 CM039035.1 97.69 True indel: indel (> 5bp) 91233931 91234722 91029885 91029094 NC_060926.1 CM039035.1 98.11 True relocation, inconsistency = -45780 91276873 91278623 91032723 91030973 NC_060926.1 CM039035.1 98.4 True indel: indel (<= 5bp) 91276204 91276867 91033387 91032724 NC_060926.1 CM039035.1 97.59 True indel: indel (<= 5bp) 91275699 91276201 91033890 91033388 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91274272 91275698 91035340 91033914 NC_060926.1 CM039035.1 97.83 True local misassembly 91266367 91267677 91036651 91035341 NC_060926.1 CM039035.1 97.86 True local misassembly 91258324 91259508 91037836 91036652 NC_060926.1 CM039035.1 98.48 True local misassembly 91250510 91251759 91039135 91037886 NC_060926.1 CM039035.1 98.48 True local misassembly 91247909 91249355 91041749 91040303 NC_060926.1 CM039035.1 98.2 True indel: indel (<= 5bp) 91246597 91247907 91043060 91041750 NC_060926.1 CM039035.1 98.25 True local misassembly 91238609 91239789 91044245 91043065 NC_060926.1 CM039035.1 98.98 True indel: indel (> 5bp) 91237359 91238608 91045544 91044295 NC_060926.1 CM039035.1 98.08 True local misassembly 91236185 91236687 91046708 91046206 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91234758 91236184 91048158 91046732 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91233446 91234756 91049469 91048159 NC_060926.1 CM039035.1 98.25 True local misassembly 91231996 91233180 91050654 91049470 NC_060926.1 CM039035.1 98.23 True indel: indel (> 5bp) 91231090 91231995 91051609 91050704 NC_060926.1 CM039035.1 98.45 True local misassembly 91223057 91223909 91053096 91052244 NC_060926.1 CM039035.1 98.83 True indel: indel (> 5bp) 91221630 91223056 91054546 91053120 NC_060926.1 CM039035.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 91055857 91054547 NC_060926.1 CM039035.1 98.17 True local misassembly 91212330 91213510 91057042 91055862 NC_060926.1 CM039035.1 98.98 True indel: indel (> 5bp) 91211080 91212329 91058341 91057092 NC_060926.1 CM039035.1 98.24 True local misassembly 91209906 91210408 91059505 91059003 NC_060926.1 CM039035.1 98.21 True indel: indel (> 5bp) 91208479 91209905 91060955 91059529 NC_060926.1 CM039035.1 98.32 True indel: indel (<= 5bp) 91207217 91208477 91062216 91060956 NC_060926.1 CM039035.1 98.49 True local misassembly 91199038 91200459 91063638 91062217 NC_060926.1 CM039035.1 98.8 True indel: indel (<= 5bp) 91196897 91199037 91065783 91063643 NC_060926.1 CM039035.1 98.55 True indel: indel (> 5bp) 91195743 91196824 91066865 91065784 NC_060926.1 CM039035.1 98.8 True indel: indel (> 5bp) 91194607 91195732 91067991 91066866 NC_060926.1 CM039035.1 97.87 True local misassembly 91199167 91200419 91069628 91068376 NC_060926.1 CM039035.1 98.08 True indel: indel (> 5bp) 91196897 91199166 91071921 91069652 NC_060926.1 CM039035.1 98.37 True local misassembly 91197976 91203390 91077336 91071922 NC_060926.1 CM039035.1 98.61 True indel: indel (<= 5bp) 91196985 91197975 91078332 91077342 NC_060926.1 CM039035.1 98.49 True relocation, inconsistency = 149837 91042442 91047130 91083038 91078350 NC_060926.1 CM039035.1 99.15 True indel: indel (<= 5bp) 91039879 91042363 91085599 91083115 NC_060926.1 CM039035.1 98.75 True relocation, inconsistency = -184075 91190353 91223858 91118596 91085695 NC_060926.1 CM039035.1 95.61 True relocation, inconsistency = 150933 91038783 91039419 91119233 91118597 NC_060926.1 CM039035.1 98.59 True local misassembly 91037551 91038309 91120520 91119762 NC_060926.1 CM039035.1 97.23 True indel: indel (> 5bp) 91036942 91037550 91121139 91120531 NC_060926.1 CM039035.1 97.37 True indel: indel (> 5bp) 91036238 91036941 91121869 91121166 NC_060926.1 CM039035.1 98.15 True local misassembly 91035208 91035961 91123262 91122509 NC_060926.1 CM039035.1 99.2 True local misassembly 91033550 91034487 91124871 91123934 NC_060926.1 CM039035.1 97.23 True indel: indel (> 5bp) 91032539 91033150 91125823 91125212 NC_060926.1 CM039035.1 98.2 True relocation, inconsistency = -10002 91039879 91042363 91128485 91126001 NC_060926.1 CM039035.1 98.83 True relocation, inconsistency = -184075 91190353 91223858 91161433 91128581 NC_060926.1 CM039035.1 95.47 True relocation, inconsistency = 143245 91042442 91047107 91166099 91161434 NC_060926.1 CM039035.1 99.13 True indel: indel (<= 5bp) 91041164 91042363 91167375 91166176 NC_060926.1 CM039035.1 99.08 True indel: indel (> 5bp) 91039879 91041137 91168634 91167376 NC_060926.1 CM039035.1 98.65 True relocation, inconsistency = -230153 91265282 91269970 91173384 91168696 NC_060926.1 CM039035.1 99.4 True relocation, inconsistency = 308860 91579118 91593296 91173672 91187725 NC_060926.1 CM039035.1 95.53 True relocation, inconsistency = 211371 91367080 91367621 91188392 91187851 NC_060926.1 CM039035.1 97.05 True indel: indel (> 5bp) 91365244 91366609 91190154 91188789 NC_060926.1 CM039035.1 98.39 True relocation, inconsistency = 20511 91343489 91344605 91191397 91190282 NC_060926.1 CM039035.1 97.85 True relocation, inconsistency = 227927 91114183 91114794 91192776 91192165 NC_060926.1 CM039035.1 98.37 True indel: indel (<= 5bp) 91112577 91114182 91194387 91192782 NC_060926.1 CM039035.1 97.32 True local misassembly 91111509 91112427 91195306 91194388 NC_060926.1 CM039035.1 97.06 True local misassembly 91110836 91111410 91195881 91195307 NC_060926.1 CM039035.1 98.26 True local misassembly 91108712 91110610 91197780 91195882 NC_060926.1 CM039035.1 98.31 True relocation, inconsistency = -15592 91122242 91123562 91199842 91198522 NC_060926.1 CM039035.1 97.5 True local misassembly 91119198 91121738 91202914 91200363 NC_060926.1 CM039035.1 97.54 True relocation, inconsistency = 16127 91101784 91102916 91204201 91203069 NC_060926.1 CM039035.1 97.44 True local misassembly 91100123 91101210 91205977 91204890 NC_060926.1 CM039035.1 98.25 True indel: indel (> 5bp) 91099374 91100122 91206749 91206001 NC_060926.1 CM039035.1 97.06 True indel: indel (> 5bp) 91097901 91099373 91208242 91206770 NC_060926.1 CM039035.1 98.3 True indel: indel (> 5bp) 91096731 91097805 91209362 91208288 NC_060926.1 CM039035.1 97.21 True local misassembly 91094730 91096580 91211213 91209363 NC_060926.1 CM039035.1 97.46 True relocation, inconsistency = -15734 91108064 91110440 91213624 91211237 NC_060926.1 CM039035.1 97.58 True local misassembly 91111108 91112428 91215027 91213707 NC_060926.1 CM039035.1 97.35 True local misassembly 91103393 91105881 91218099 91215600 NC_060926.1 CM039035.1 97.68 True fake: not a misassembly (possible transposable element) 91111108 91112428 91219502 91218182 NC_060926.1 CM039035.1 97.43 True fake: not a misassembly (possible transposable element) 91098660 91101210 91222647 91220075 NC_060926.1 CM039035.1 97.2 True fake: not a misassembly (possible transposable element) 91111108 91112428 91223976 91222656 NC_060926.1 CM039035.1 97.2 True fake: not a misassembly (possible transposable element) 91098660 91101210 91227122 91224549 NC_060926.1 CM039035.1 97.2 True fake: not a misassembly (possible transposable element) 91111108 91112428 91228451 91227131 NC_060926.1 CM039035.1 97.35 True fake: not a misassembly (possible transposable element) 91098660 91101210 91231597 91229024 NC_060926.1 CM039035.1 97.24 True relocation, inconsistency = -9008 91106455 91107587 91232810 91231678 NC_060926.1 CM039035.1 97.35 True local misassembly 91098660 91101210 91236072 91233499 NC_060926.1 CM039035.1 97.24 True local misassembly 91102202 91102831 91236769 91236140 NC_060926.1 CM039035.1 97.3 True indel: indel (> 5bp) 91101387 91102126 91237509 91236770 NC_060926.1 CM039035.1 97.43 True local misassembly 91097276 91100674 91241190 91237744 NC_060926.1 CM039035.1 95.2 True relocation, inconsistency = 100984 90936820 90995916 91300694 91241566 NC_060926.1 CM039035.1 99.41 True local misassembly 90920498 90934970 91317962 91303518 NC_060926.1 CM039035.1 99.34 True relocation, scaffold gap is present, inconsistency = 1082917 92018088 92202629 91318163 91502717 NC_060926.1 CM039035.1 99.81 True relocation, inconsistency = -11428 91708864 92029515 91824319 91502718 NC_060926.1 CM039035.1 99.45 True relocation, inconsistency = 863047 90844121 90845816 91824320 91826015 NC_060926.1 CM039035.1 99.26 True indel: indel (> 5bp) 90845826 90846701 91826016 91826891 NC_060926.1 CM039035.1 99.54 True local misassembly 90847307 90849675 91826892 91829260 NC_060926.1 CM039035.1 99.45 True indel: indel (<= 5bp) 90849677 90850202 91829261 91829786 NC_060926.1 CM039035.1 99.62 True local misassembly 90850749 90854020 91830332 91833603 NC_060926.1 CM039035.1 99.54 True local misassembly 90855180 90856227 91834638 91835685 NC_060926.1 CM039035.1 99.43 True relocation, inconsistency = 28706 90893214 90934970 91843966 91884198 NC_060926.1 CM039035.1 95.79 True local misassembly 90936820 90953677 91886985 91903849 NC_060926.1 CM039035.1 99.11 True relocation, scaffold gap is present, inconsistency = 1287362 92241240 92304756 91904050 91968757 NC_060926.1 CM039035.1 97.93 True local misassembly 92301340 92327732 91968758 91995150 NC_060926.1 CM039035.1 99.8 True relocation, inconsistency = -10220 92317513 92327573 91995151 92005211 NC_060926.1 CM039035.1 99.76 True relocation, inconsistency = -10220 92317354 92327732 92005212 92015590 NC_060926.1 CM039035.1 99.7 True relocation, inconsistency = -19763 92308686 92310401 92016307 92018025 NC_060926.1 CM039035.1 95.98 True relocation, inconsistency = 7840 92318242 92338379 92018026 92038165 NC_060926.1 CM039035.1 99.34 True fake: not a misassembly (possible transposable element) 92555554 92556141 92038390 92038977 NC_060926.1 CM039035.1 95.92 True fake: not a misassembly (possible transposable element) 92337647 92339673 92039130 92041157 NC_060926.1 CM039035.1 97.93 True local misassembly 92337439 92339040 92041299 92042901 NC_060926.1 CM039035.1 97.69 True local misassembly 92337439 92339040 92042997 92044599 NC_060926.1 CM039035.1 97.69 True fake: not a misassembly (possible transposable element) 94671058 94671720 92046810 92047472 NC_060926.1 CM039035.1 95.78 True fake: not a misassembly (possible transposable element) 92336720 92337572 92047539 92048392 NC_060926.1 CM039035.1 97.54 True relocation, inconsistency = 2319108 94659092 94662332 92050804 92054044 NC_060926.1 CM039035.1 97.04 True local misassembly 94662709 94663233 92054591 92055115 NC_060926.1 CM039035.1 98.48 True relocation, inconsistency = -2326580 92336720 92337572 92055182 92056035 NC_060926.1 CM039035.1 97.66 True relocation, inconsistency = 2319108 94659092 94662332 92058447 92061687 NC_060926.1 CM039035.1 96.98 True local misassembly 94662709 94663233 92062234 92062758 NC_060926.1 CM039035.1 98.48 True relocation, inconsistency = -2326580 92336720 92337572 92062825 92063678 NC_060926.1 CM039035.1 97.66 True relocation, inconsistency = 1822973 94161029 94161727 92064162 92064860 NC_060926.1 CM039035.1 97.25 True relocation, inconsistency = -1814812 92346916 92348622 92064861 92066567 NC_060926.1 CM039035.1 97.54 True local misassembly 92348965 92351216 92066568 92068819 NC_060926.1 CM039035.1 98.09 True indel: indel (<= 5bp) 92351217 92352526 92068821 92070130 NC_060926.1 CM039035.1 98.93 True local misassembly 92350740 92352536 92070383 92072180 NC_060926.1 CM039035.1 96.94 True fake: not a misassembly (possible transposable element) 94142207 94143972 92072864 92074629 NC_060926.1 CM039035.1 96.89 True fake: not a misassembly (possible transposable element) 92350740 92352536 92075481 92077278 NC_060926.1 CM039035.1 96.94 True relocation, inconsistency = 2177197 94530442 94532429 92077987 92079974 NC_060926.1 CM039035.1 96.68 True local misassembly 94532768 94536010 92079975 92083217 NC_060926.1 CM039035.1 96.21 True relocation, inconsistency = -54371 94482162 94486555 92083740 92088135 NC_060926.1 CM039035.1 96.7 True relocation, inconsistency = -118447 94368131 94370051 92088158 92090078 NC_060926.1 CM039035.1 96.72 True relocation, inconsistency = 131021 94502119 94502893 92091125 92091899 NC_060926.1 CM039035.1 96.15 True relocation, inconsistency = -2007125 92495769 92496989 92091900 92093120 NC_060926.1 CM039035.1 97.13 True relocation, inconsistency = -119091 92379393 92381251 92094615 92096472 NC_060926.1 CM039035.1 98.56 True relocation, inconsistency = -12911 92368341 92374311 92096473 92102446 NC_060926.1 CM039035.1 97.84 True local misassembly 92371594 92380471 92102447 92110985 NC_060926.1 CM039035.1 95.06 True relocation, inconsistency = 1392955 93773427 93774388 92110986 92111947 NC_060926.1 CM039035.1 97.72 True relocation, inconsistency = -47063 93727326 93732628 92111948 92117252 NC_060926.1 CM039035.1 97.81 True relocation, inconsistency = -1033979 92698650 92700009 92117253 92118612 NC_060926.1 CM039035.1 97.73 True relocation, inconsistency = -343520 92356781 92357641 92118904 92119764 NC_060926.1 CM039035.1 97.84 True local misassembly 92356962 92362962 92119765 92125765 NC_060926.1 CM039035.1 98.3 True relocation, inconsistency = 1435430 93798393 93803816 92125766 92131188 NC_060926.1 CM039035.1 97.44 True relocation, inconsistency = -1446989 92356828 92360046 92131189 92134406 NC_060926.1 CM039035.1 98.14 True fake: not a misassembly (possible transposable element) 92372964 92374155 92134407 92135599 NC_060926.1 CM039035.1 98.86 True fake: not a misassembly (possible transposable element) 92360362 92361478 92135740 92136856 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = 9856 92371335 92376019 92136857 92141544 NC_060926.1 CM039035.1 98.36 True relocation, inconsistency = 11217 92387237 92390155 92141545 92144464 NC_060926.1 CM039035.1 97.45 True local misassembly 92397408 92398651 92144918 92146161 NC_060926.1 CM039035.1 96.22 True local misassembly 92399052 92401521 92146392 92148861 NC_060926.1 CM039035.1 97.98 True local misassembly 92405565 92406146 92148998 92149579 NC_060926.1 CM039035.1 97.77 True local misassembly 92406529 92407640 92149792 92150903 NC_060926.1 CM039035.1 97.39 True relocation, inconsistency = 630073 93038478 93039207 92151668 92152397 NC_060926.1 CM039035.1 98.06 True relocation, inconsistency = 1538797 94578005 94579907 92152398 92154301 NC_060926.1 CM039035.1 96.64 True relocation, inconsistency = -783234 93797152 93800416 92154780 92158045 NC_060926.1 CM039035.1 97.55 True indel: stretch of mismatches 93800551 93802260 92158180 92159888 NC_060926.1 CM039035.1 97.97 True relocation, inconsistency = -1415719 92386542 92391314 92159889 92164662 NC_060926.1 CM039035.1 97.67 True local misassembly 92394715 92396181 92164663 92166129 NC_060926.1 CM039035.1 99.47 True local misassembly 92395502 92401942 92166130 92172740 NC_060926.1 CM039035.1 96.16 True relocation, inconsistency = 18688 92422386 92424843 92174496 92176953 NC_060926.1 CM039035.1 99.06 True local misassembly 92425562 92427684 92177671 92179793 NC_060926.1 CM039035.1 98.59 True relocation, inconsistency = 13249 92441747 92445349 92180607 92184209 NC_060926.1 CM039035.1 99.14 True relocation, inconsistency = 29208 92474558 92475490 92184210 92185143 NC_060926.1 CM039035.1 98.05 True relocation, inconsistency = 1189101 93664592 93668070 92185144 92188623 NC_060926.1 CM039035.1 98.22 True relocation, inconsistency = -1139481 92528727 92530785 92188761 92190818 NC_060926.1 CM039035.1 98.45 True local misassembly 92526713 92527357 92190819 92191463 NC_060926.1 CM039035.1 97.46 True indel: indel (<= 5bp) 92527358 92528036 92191465 92192143 NC_060926.1 CM039035.1 98.38 True indel: indel (<= 5bp) 92528037 92529395 92192145 92193503 NC_060926.1 CM039035.1 97.42 True relocation, inconsistency = 1146280 93676711 93679343 92194539 92197172 NC_060926.1 CM039035.1 98.1 True relocation, inconsistency = -1220695 92458649 92461776 92197173 92200296 NC_060926.1 CM039035.1 97.74 True local misassembly 92458040 92464169 92200297 92206425 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = 11550 92475720 92479797 92206426 92210501 NC_060926.1 CM039035.1 98.34 True local misassembly 92476062 92477148 92210502 92211588 NC_060926.1 CM039035.1 98.29 True relocation, inconsistency = 1537523 94014757 94015700 92211674 92212616 NC_060926.1 CM039035.1 97.78 True relocation, inconsistency = -1380712 92635238 92636463 92212866 92214091 NC_060926.1 CM039035.1 98.78 True indel: indel (<= 5bp) 92636598 92638502 92214225 92216130 NC_060926.1 CM039035.1 98.74 True relocation, inconsistency = -49608 92589025 92590725 92216261 92217961 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = -119770 92470956 92476403 92217962 92223409 NC_060926.1 CM039035.1 98.7 True relocation, inconsistency = -7472 92469203 92472679 92223681 92227156 NC_060926.1 CM039035.1 98.16 True relocation, inconsistency = 1769965 94242645 94243297 92227157 92227809 NC_060926.1 CM039035.1 96.11 True relocation, inconsistency = -1785252 92458046 92464169 92227810 92233932 NC_060926.1 CM039035.1 98.32 True relocation, inconsistency = 20046 92484546 92485214 92234263 92234931 NC_060926.1 CM039035.1 97.76 True indel: indel (<= 5bp) 92485216 92486574 92234932 92236290 NC_060926.1 CM039035.1 98.68 True relocation, inconsistency = 1189781 93676711 93679839 92236646 92239775 NC_060926.1 CM039035.1 98.05 True relocation, inconsistency = 158169 93838009 93839151 92239776 92240918 NC_060926.1 CM039035.1 97.78 True relocation, inconsistency = -1382600 92456686 92460423 92241053 92244788 NC_060926.1 CM039035.1 98.11 True relocation, inconsistency = 9852 92470276 92476387 92244789 92250901 NC_060926.1 CM039035.1 98.19 True local misassembly 92470276 92476403 92250902 92257031 NC_060926.1 CM039035.1 98.43 True relocation, inconsistency = -15965 92461103 92464610 92257696 92261203 NC_060926.1 CM039035.1 98.83 True local misassembly 92470048 92476190 92261204 92267346 NC_060926.1 CM039035.1 98.31 True local misassembly 92476870 92477408 92267347 92267885 NC_060926.1 CM039035.1 98.75 True relocation, inconsistency = -9852 92467557 92472679 92267886 92273008 NC_060926.1 CM039035.1 98.22 True local misassembly 92475398 92479507 92273009 92277118 NC_060926.1 CM039035.1 98.41 True relocation, inconsistency = -19701 92459807 92461127 92277119 92278439 NC_060926.1 CM039035.1 98.18 True local misassembly 92461466 92463131 92278440 92280105 NC_060926.1 CM039035.1 97.96 True indel: indel (<= 5bp) 92463132 92465384 92280107 92282359 NC_060926.1 CM039035.1 99.29 True local misassembly 92468910 92469812 92284186 92285088 NC_060926.1 CM039035.1 97.79 True local misassembly 92469813 92471640 92285427 92287254 NC_060926.1 CM039035.1 98.95 True local misassembly 92465866 92476190 92287255 92297917 NC_060926.1 CM039035.1 95.81 True local misassembly 92471097 92471802 92297918 92298622 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = -10533 92461270 92465384 92298623 92302736 NC_060926.1 CM039035.1 98.47 True local misassembly 92465866 92467943 92302875 92304953 NC_060926.1 CM039035.1 98.99 True local misassembly 92469303 92478453 92304954 92314440 NC_060926.1 CM039035.1 95.27 True relocation, inconsistency = -55703 92423745 92425608 92315435 92317298 NC_060926.1 CM039035.1 98.56 True relocation, inconsistency = 100567 92526176 92529272 92317299 92320395 NC_060926.1 CM039035.1 98.13 True fake: not a misassembly (possible transposable element) 93700984 93701870 92321029 92321915 NC_060926.1 CM039035.1 99.1 True fake: not a misassembly (possible transposable element) 92531260 92532119 92322388 92323247 NC_060926.1 CM039035.1 98.76 True relocation, inconsistency = -25814 92506306 92509589 92323248 92326532 NC_060926.1 CM039035.1 98.26 True indel: indel (<= 5bp) 92509999 92516690 92326941 92333632 NC_060926.1 CM039035.1 98.36 True local misassembly 92511931 92512919 92333633 92334621 NC_060926.1 CM039035.1 98.64 True local misassembly 92518022 92523996 92334622 92340598 NC_060926.1 CM039035.1 98.81 True relocation, inconsistency = -55395 92468602 92470640 92340599 92342636 NC_060926.1 CM039035.1 98.35 True relocation, inconsistency = 15972 92486754 92487292 92342778 92343316 NC_060926.1 CM039035.1 97.96 True relocation, inconsistency = -8835 92480965 92485790 92345824 92350648 NC_060926.1 CM039035.1 99.3 True local misassembly 92486586 92488576 92350764 92352754 NC_060926.1 CM039035.1 98.24 True local misassembly 92488577 92492018 92353093 92356534 NC_060926.1 CM039035.1 99.56 True indel: indel (<= 5bp) 92492020 92492572 92356535 92357087 NC_060926.1 CM039035.1 99.64 True local misassembly 92492573 92495137 92357768 92360332 NC_060926.1 CM039035.1 99.53 True relocation, inconsistency = 9863 92505001 92509118 92360333 92364450 NC_060926.1 CM039035.1 97.98 True indel: indel (<= 5bp) 92509119 92509704 92364452 92365037 NC_060926.1 CM039035.1 98.35 True relocation, inconsistency = -14621 92495084 92498349 92365038 92368303 NC_060926.1 CM039035.1 98.68 True local misassembly 92503586 92509589 92368438 92374442 NC_060926.1 CM039035.1 98.4 True local misassembly 92510092 92516708 92375286 92381902 NC_060926.1 CM039035.1 98.26 True relocation, inconsistency = -44527 92472182 92472983 92381903 92382704 NC_060926.1 CM039035.1 98.49 True local misassembly 92473695 92474680 92383079 92384064 NC_060926.1 CM039035.1 97.77 True indel: indel (<= 5bp) 92474682 92475708 92384065 92385091 NC_060926.1 CM039035.1 98.96 True relocation, inconsistency = 56073 92531782 92536518 92385092 92389827 NC_060926.1 CM039035.1 99.35 True local misassembly 92532787 92533816 92389828 92390857 NC_060926.1 CM039035.1 99.46 True local misassembly 92533817 92534485 92391200 92391868 NC_060926.1 CM039035.1 97.46 True indel: indel (<= 5bp) 92534487 92536860 92391869 92394242 NC_060926.1 CM039035.1 99.12 True indel: indel (<= 5bp) 92536861 92537903 92394244 92395286 NC_060926.1 CM039035.1 98.18 True relocation, inconsistency = -10526 92527696 92528408 92395605 92396317 NC_060926.1 CM039035.1 98.88 True local misassembly 92535707 92537708 92397106 92399045 NC_060926.1 CM039035.1 96.79 True relocation, inconsistency = 1189435 93727144 93733127 92399046 92405027 NC_060926.1 CM039035.1 98.01 True relocation, inconsistency = -1197587 92535541 92539568 92405028 92409055 NC_060926.1 CM039035.1 99.15 True relocation, inconsistency = 821407 93360976 93364478 92409056 92412554 NC_060926.1 CM039035.1 98.09 True relocation, inconsistency = -736636 92627843 92630637 92412555 92415348 NC_060926.1 CM039035.1 98.6 True relocation, inconsistency = -8492 92622146 92633065 92415349 92426269 NC_060926.1 CM039035.1 98.97 True local misassembly 92631160 92635103 92427083 92431025 NC_060926.1 CM039035.1 98.99 True local misassembly 92633199 92633877 92433197 92433876 NC_060926.1 CM039035.1 98.77 True local misassembly 92637957 92643594 92433877 92439517 NC_060926.1 CM039035.1 98.51 True relocation, inconsistency = 18687 92662649 92669074 92439885 92446312 NC_060926.1 CM039035.1 99.0 True relocation, inconsistency = 15977 92685052 92686411 92446313 92447671 NC_060926.1 CM039035.1 98.4 True indel: stretch of mismatches 92686546 92691847 92447806 92453107 NC_060926.1 CM039035.1 99.53 True local misassembly 92689809 92691847 92453108 92455147 NC_060926.1 CM039035.1 98.76 True local misassembly 92687226 92693210 92455285 92461269 NC_060926.1 CM039035.1 99.28 True relocation, inconsistency = -24816 92668529 92675269 92461404 92468144 NC_060926.1 CM039035.1 99.3 True relocation, inconsistency = 12577 92687906 92692664 92468204 92472961 NC_060926.1 CM039035.1 98.88 True local misassembly 92686546 92693210 92472962 92479626 NC_060926.1 CM039035.1 99.19 True relocation, inconsistency = -15639 92677706 92682331 92479761 92484386 NC_060926.1 CM039035.1 99.07 True local misassembly 92681263 92685051 92487060 92490848 NC_060926.1 CM039035.1 98.81 True indel: stretch of mismatches 92685186 92686572 92490983 92492369 NC_060926.1 CM039035.1 98.34 True relocation, inconsistency = 1925795 94613388 94617169 92493390 92497169 NC_060926.1 CM039035.1 97.91 True relocation, inconsistency = -1952987 92664183 92665211 92497170 92498201 NC_060926.1 CM039035.1 98.52 True relocation, inconsistency = 22096 92688109 92689944 92499003 92500839 NC_060926.1 CM039035.1 98.29 True relocation, inconsistency = 8839 92698784 92704100 92500840 92506157 NC_060926.1 CM039035.1 99.08 True local misassembly 92702858 92704929 92506273 92508345 NC_060926.1 CM039035.1 98.84 True relocation, inconsistency = 141682 92846975 92854267 92508709 92516001 NC_060926.1 CM039035.1 98.86 True relocation, inconsistency = -145416 92709144 92714662 92516294 92521813 NC_060926.1 CM039035.1 98.8 True relocation, inconsistency = 1504920 94220363 94221464 92522594 92523695 NC_060926.1 CM039035.1 98.11 True relocation, inconsistency = -474860 93746605 93754703 92523696 92531796 NC_060926.1 CM039035.1 97.52 True relocation, inconsistency = -1005967 92748737 92749622 92531797 92532682 NC_060926.1 CM039035.1 97.6 True relocation, inconsistency = 1019223 93768846 93772214 92532683 92536051 NC_060926.1 CM039035.1 97.57 True indel: indel (<= 5bp) 93772348 93773032 92536186 92536870 NC_060926.1 CM039035.1 97.44 True relocation, inconsistency = -1026695 92746338 92749753 92536871 92540286 NC_060926.1 CM039035.1 97.69 True relocation, inconsistency = 1087521 93837275 93838083 92540287 92541096 NC_060926.1 CM039035.1 96.93 True relocation, inconsistency = -1113654 92724430 92727651 92541097 92544317 NC_060926.1 CM039035.1 97.95 True relocation, inconsistency = 18323 92746461 92747011 92544804 92545355 NC_060926.1 CM039035.1 97.69 True relocation, inconsistency = -227452 92519560 92525935 92545356 92551732 NC_060926.1 CM039035.1 98.04 True relocation, inconsistency = 1240565 93766501 93772033 92551733 92557266 NC_060926.1 CM039035.1 97.5 True relocation, inconsistency = -1023297 92748737 92749726 92557267 92558256 NC_060926.1 CM039035.1 97.69 True local misassembly 92746333 92749753 92558257 92561676 NC_060926.1 CM039035.1 97.6 True relocation, inconsistency = 1087521 93837275 93838083 92561677 92562486 NC_060926.1 CM039035.1 97.04 True relocation, inconsistency = -1113654 92724430 92727651 92562487 92565707 NC_060926.1 CM039035.1 97.98 True relocation, inconsistency = -7817 92720022 92724295 92565895 92570166 NC_060926.1 CM039035.1 97.17 True relocation, inconsistency = 24441 92748737 92749753 92570167 92571183 NC_060926.1 CM039035.1 97.63 True relocation, inconsistency = -201306 92548615 92550144 92571351 92572880 NC_060926.1 CM039035.1 97.78 True relocation, inconsistency = -73726 92476632 92483005 92573094 92579469 NC_060926.1 CM039035.1 97.8 True relocation, inconsistency = 365779 92848785 92850743 92579470 92581429 NC_060926.1 CM039035.1 98.66 True relocation, inconsistency = -162756 92688109 92689944 92581551 92583387 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = 8839 92698784 92704100 92583388 92588705 NC_060926.1 CM039035.1 99.02 True local misassembly 92702742 92704803 92588706 92590767 NC_060926.1 CM039035.1 98.54 True relocation, inconsistency = 135905 92840709 92843679 92590768 92593739 NC_060926.1 CM039035.1 98.62 True local misassembly 92847605 92853589 92595288 92601271 NC_060926.1 CM039035.1 98.88 True relocation, inconsistency = -140658 92712932 92714662 92601272 92603002 NC_060926.1 CM039035.1 98.77 True relocation, inconsistency = 1099381 93814806 93820807 92603765 92609767 NC_060926.1 CM039035.1 97.72 True relocation, inconsistency = -48594 93772399 93773032 92609953 92610586 NC_060926.1 CM039035.1 97.33 True relocation, inconsistency = -1026695 92746338 92749753 92610587 92614002 NC_060926.1 CM039035.1 97.54 True relocation, inconsistency = 977598 93727352 93728238 92614003 92614889 NC_060926.1 CM039035.1 97.6 True relocation, inconsistency = 38227 93766466 93772214 92614890 92620639 NC_060926.1 CM039035.1 97.57 True indel: indel (<= 5bp) 93772348 93773032 92620774 92621458 NC_060926.1 CM039035.1 97.5 True relocation, inconsistency = -1026695 92746338 92749753 92621459 92624874 NC_060926.1 CM039035.1 97.72 True relocation, inconsistency = -35301 92714453 92714959 92624875 92625381 NC_060926.1 CM039035.1 98.87 True relocation, inconsistency = 9167 92724430 92727651 92625685 92628905 NC_060926.1 CM039035.1 97.92 True relocation, inconsistency = 160027 92888042 92894478 92629269 92635705 NC_060926.1 CM039035.1 97.89 True relocation, inconsistency = -372552 92521927 92525935 92635706 92639714 NC_060926.1 CM039035.1 98.03 True relocation, inconsistency = 180258 92706194 92708644 92639715 92642164 NC_060926.1 CM039035.1 98.09 True relocation, inconsistency = 37688 92746333 92749753 92642165 92645585 NC_060926.1 CM039035.1 97.31 True local misassembly 92746360 92749753 92645586 92648979 NC_060926.1 CM039035.1 97.63 True relocation, inconsistency = 1087521 93837275 93838970 92648980 92650676 NC_060926.1 CM039035.1 97.04 True relocation, inconsistency = -1268260 92570711 92572032 92650677 92651998 NC_060926.1 CM039035.1 96.81 True indel: indel (<= 5bp) 92572034 92573408 92651999 92653373 NC_060926.1 CM039035.1 97.45 True relocation, inconsistency = 132521 92706082 92708329 92653526 92655772 NC_060926.1 CM039035.1 98.18 True fake: not a misassembly (possible transposable element) 92747132 92749753 92655866 92658486 NC_060926.1 CM039035.1 97.67 True fake: not a misassembly (possible transposable element) 92714453 92714959 92658487 92658993 NC_060926.1 CM039035.1 98.87 True local misassembly 92717478 92718965 92661850 92663337 NC_060926.1 CM039035.1 98.79 True local misassembly 92718966 92722232 92663676 92666942 NC_060926.1 CM039035.1 98.87 True relocation, inconsistency = 128771 92851004 92857324 92666943 92673262 NC_060926.1 CM039035.1 98.86 True local misassembly 92861063 92862585 92673263 92674785 NC_060926.1 CM039035.1 99.06 True local misassembly 92857280 92862923 92674920 92680562 NC_060926.1 CM039035.1 98.81 True relocation, inconsistency = -149827 92714906 92716122 92682372 92683588 NC_060926.1 CM039035.1 99.5 True relocation, inconsistency = 141000 92857123 92861622 92683589 92688087 NC_060926.1 CM039035.1 98.44 True relocation, inconsistency = -114191 92747432 92751621 92688088 92692278 NC_060926.1 CM039035.1 98.39 True local misassembly 92747205 92748371 92692279 92693445 NC_060926.1 CM039035.1 98.55 True relocation, inconsistency = 139665 92888037 92894852 92693446 92700260 NC_060926.1 CM039035.1 97.92 True local misassembly 92891458 92893336 92700261 92702139 NC_060926.1 CM039035.1 98.5 True relocation, inconsistency = -18348 92876824 92878548 92703975 92705699 NC_060926.1 CM039035.1 99.36 True local misassembly 92875465 92877503 92706350 92708388 NC_060926.1 CM039035.1 98.93 True relocation, inconsistency = -251782 92625722 92632351 92708389 92715019 NC_060926.1 CM039035.1 98.78 True local misassembly 92636430 92637823 92715020 92716413 NC_060926.1 CM039035.1 98.2 True indel: indel (<= 5bp) 92637957 92639508 92716548 92718099 NC_060926.1 CM039035.1 99.48 True local misassembly 92638870 92642580 92718477 92722188 NC_060926.1 CM039035.1 97.84 True local misassembly 92638503 92639735 92722189 92723421 NC_060926.1 CM039035.1 99.33 True relocation, inconsistency = -11891 92627905 92629120 92723482 92724697 NC_060926.1 CM039035.1 98.19 True local misassembly 92629121 92631548 92725040 92727467 NC_060926.1 CM039035.1 98.93 True local misassembly 92631984 92633018 92727559 92728593 NC_060926.1 CM039035.1 98.45 True local misassembly 92633356 92633867 92728594 92729105 NC_060926.1 CM039035.1 97.46 True indel: indel (<= 5bp) 92633868 92634546 92729107 92729785 NC_060926.1 CM039035.1 98.09 True local misassembly 92637957 92643813 92729796 92735653 NC_060926.1 CM039035.1 98.52 True relocation, inconsistency = 14606 92658420 92659929 92735654 92737163 NC_060926.1 CM039035.1 99.66 True local misassembly 92660272 92661729 92737164 92738621 NC_060926.1 CM039035.1 99.52 True local misassembly 92661730 92662648 92739301 92740219 NC_060926.1 CM039035.1 99.46 True local misassembly 92663490 92664207 92741401 92742118 NC_060926.1 CM039035.1 99.72 True indel: indel (<= 5bp) 92664208 92668336 92742120 92746248 NC_060926.1 CM039035.1 99.56 True relocation, inconsistency = 18697 92687034 92690364 92746249 92749579 NC_060926.1 CM039035.1 98.93 True relocation, inconsistency = -74067 92616358 92617282 92749640 92750564 NC_060926.1 CM039035.1 97.95 True local misassembly 92617625 92618242 92750565 92751182 NC_060926.1 CM039035.1 97.41 True indel: indel (<= 5bp) 92618243 92619162 92751184 92752103 NC_060926.1 CM039035.1 99.34 True relocation, inconsistency = 43486 92662649 92668336 92752104 92757794 NC_060926.1 CM039035.1 99.56 True relocation, inconsistency = 18697 92687034 92690364 92757795 92761125 NC_060926.1 CM039035.1 98.95 True relocation, inconsistency = -26168 92664197 92665675 92761126 92762605 NC_060926.1 CM039035.1 99.31 True relocation, inconsistency = 198447 92864319 92864925 92762802 92763408 NC_060926.1 CM039035.1 97.53 True relocation, inconsistency = -183831 92681106 92685051 92763420 92767364 NC_060926.1 CM039035.1 99.06 True relocation, inconsistency = -21409 92663643 92665675 92767365 92769398 NC_060926.1 CM039035.1 99.27 True fake: not a misassembly (possible transposable element) 92616214 92620653 92769533 92773971 NC_060926.1 CM039035.1 99.12 True fake: not a misassembly (possible transposable element) 92674331 92676007 92773972 92775648 NC_060926.1 CM039035.1 99.38 True local misassembly 92681106 92685031 92775649 92779574 NC_060926.1 CM039035.1 98.93 True local misassembly 92681106 92684371 92779728 92782993 NC_060926.1 CM039035.1 98.71 True local misassembly 92682457 92686411 92783119 92787073 NC_060926.1 CM039035.1 98.46 True indel: stretch of mismatches 92686546 92692664 92787208 92793326 NC_060926.1 CM039035.1 99.29 True local misassembly 92686546 92694569 92793327 92801351 NC_060926.1 CM039035.1 99.02 True local misassembly 92689812 92691304 92801352 92802844 NC_060926.1 CM039035.1 99.03 True local misassembly 92687906 92693172 92802845 92808113 NC_060926.1 CM039035.1 98.52 True relocation, inconsistency = -88689 92604484 92606561 92808114 92810191 NC_060926.1 CM039035.1 99.14 True relocation, inconsistency = 11557 92618253 92619478 92810326 92811551 NC_060926.1 CM039035.1 99.35 True relocation, inconsistency = 66933 92687231 92688451 92812371 92813591 NC_060926.1 CM039035.1 98.44 True relocation, inconsistency = -28548 92660195 92661943 92813883 92815631 NC_060926.1 CM039035.1 99.37 True relocation, inconsistency = 1836054 94500858 94504762 92818492 92822399 NC_060926.1 CM039035.1 96.52 True relocation, inconsistency = -1844891 92662077 92662674 92824605 92825202 NC_060926.1 CM039035.1 99.16 True relocation, inconsistency = 568767 93232661 93233476 92826422 92827237 NC_060926.1 CM039035.1 98.53 True relocation, inconsistency = -390712 92843043 92846779 92827516 92831253 NC_060926.1 CM039035.1 97.08 True relocation, inconsistency = 13935 92860715 92861595 92831254 92832134 NC_060926.1 CM039035.1 98.77 True relocation, inconsistency = -139988 92721608 92724455 92832135 92834982 NC_060926.1 CM039035.1 98.42 True local misassembly 92724798 92726637 92834983 92836822 NC_060926.1 CM039035.1 98.53 True local misassembly 92726638 92727712 92837160 92838234 NC_060926.1 CM039035.1 97.58 True relocation, inconsistency = -13584 92714713 92716362 92838819 92840468 NC_060926.1 CM039035.1 99.42 True local misassembly 92710928 92713737 92840469 92843278 NC_060926.1 CM039035.1 98.52 True relocation, inconsistency = 33946 92747684 92751630 92843279 92847225 NC_060926.1 CM039035.1 97.92 True relocation, inconsistency = -198250 92553381 92555558 92847226 92849404 NC_060926.1 CM039035.1 97.86 True relocation, inconsistency = 308019 92864158 92870723 92849985 92856550 NC_060926.1 CM039035.1 98.99 True local misassembly 92872069 92872737 92857895 92858563 NC_060926.1 CM039035.1 97.61 True indel: indel (<= 5bp) 92872739 92873301 92858564 92859126 NC_060926.1 CM039035.1 98.4 True indel: indel (<= 5bp) 92873303 92874435 92859127 92860259 NC_060926.1 CM039035.1 97.0 True local misassembly 92875127 92876838 92860608 92862319 NC_060926.1 CM039035.1 98.54 True relocation, inconsistency = -189260 92687906 92694569 92862647 92869309 NC_060926.1 CM039035.1 98.27 True local misassembly 92687772 92691170 92869310 92872875 NC_060926.1 CM039035.1 95.38 True relocation, inconsistency = -29566 92662649 92664196 92873920 92875467 NC_060926.1 CM039035.1 97.87 True relocation, inconsistency = 1790864 94455321 94456000 92875728 92876407 NC_060926.1 CM039035.1 97.82 True fake: not a misassembly (possible transposable element) 92936961 92938681 92876408 92878126 NC_060926.1 CM039035.1 98.84 True fake: not a misassembly (possible transposable element) 94457865 94458612 92878270 92879017 NC_060926.1 CM039035.1 97.93 True relocation, inconsistency = -1902141 92556472 92561198 92879018 92883745 NC_060926.1 CM039035.1 98.27 True relocation, inconsistency = 128613 92689812 92690738 92883746 92884672 NC_060926.1 CM039035.1 99.08 True relocation, inconsistency = -29733 92662649 92664196 92886316 92887863 NC_060926.1 CM039035.1 97.93 True relocation, inconsistency = 1790864 94455321 94456000 92888124 92888803 NC_060926.1 CM039035.1 97.76 True fake: not a misassembly (possible transposable element) 92936961 92938681 92888804 92890522 NC_060926.1 CM039035.1 98.78 True fake: not a misassembly (possible transposable element) 94457865 94458593 92890666 92891394 NC_060926.1 CM039035.1 98.0 True relocation, inconsistency = -1841484 92617110 92621853 92891395 92896141 NC_060926.1 CM039035.1 98.4 True relocation, inconsistency = 39410 92661264 92661896 92896142 92896774 NC_060926.1 CM039035.1 99.19 True relocation, inconsistency = 182128 92844025 92848609 92896775 92901360 NC_060926.1 CM039035.1 98.84 True local misassembly 92845891 92848633 92901361 92904104 NC_060926.1 CM039035.1 98.91 True relocation, inconsistency = -142698 92707285 92709311 92905454 92907480 NC_060926.1 CM039035.1 99.46 True relocation, inconsistency = 135223 92844778 92846745 92907724 92909690 NC_060926.1 CM039035.1 97.61 True relocation, inconsistency = 10535 92857294 92858620 92909704 92911030 NC_060926.1 CM039035.1 98.87 True local misassembly 92857261 92859500 92911031 92913270 NC_060926.1 CM039035.1 99.21 True relocation, inconsistency = -11896 92847605 92856309 92913271 92921634 NC_060926.1 CM039035.1 95.27 True local misassembly 92858687 92862585 92921635 92925533 NC_060926.1 CM039035.1 98.81 True relocation, inconsistency = -115209 92747749 92751615 92925906 92929773 NC_060926.1 CM039035.1 98.11 True local misassembly 92746453 92748371 92930386 92932304 NC_060926.1 CM039035.1 99.03 True relocation, inconsistency = 114867 92863239 92867175 92932305 92936241 NC_060926.1 CM039035.1 98.35 True relocation, inconsistency = 1029784 93897433 93900350 92936715 92939634 NC_060926.1 CM039035.1 97.3 True relocation, inconsistency = -1163994 92736357 92739412 92939635 92942695 NC_060926.1 CM039035.1 98.17 True relocation, inconsistency = 170898 92910311 92912993 92942696 92945379 NC_060926.1 CM039035.1 97.87 True relocation, inconsistency = 889417 93802591 93803166 92945560 92946135 NC_060926.1 CM039035.1 97.76 True relocation, inconsistency = -923051 92880116 92881528 92946136 92947548 NC_060926.1 CM039035.1 97.24 True local misassembly 92881867 92883468 92947549 92949150 NC_060926.1 CM039035.1 98.06 True indel: indel (<= 5bp) 92883471 92884860 92949151 92950540 NC_060926.1 CM039035.1 97.91 True relocation, inconsistency = 983174 93868050 93870932 92950556 92953403 NC_060926.1 CM039035.1 96.1 True indel: indel (<= 5bp) 93871140 93872114 92953615 92954589 NC_060926.1 CM039035.1 97.03 True indel: indel (<= 5bp) 93872116 93872794 92954590 92955268 NC_060926.1 CM039035.1 98.67 True indel: indel (> 5bp) 93873112 93874025 92955551 92956464 NC_060926.1 CM039035.1 98.03 True relocation, inconsistency = -134274 93740406 93742310 92957119 92959022 NC_060926.1 CM039035.1 97.69 True relocation, inconsistency = -1013425 92730384 92732937 92960521 92963074 NC_060926.1 CM039035.1 98.76 True relocation, inconsistency = 235795 92968733 92975904 92963075 92970244 NC_060926.1 CM039035.1 98.51 True relocation, inconsistency = -10184 92965736 92968115 92970260 92972634 NC_060926.1 CM039035.1 98.03 True relocation, inconsistency = -310217 92658157 92661263 92972893 92975998 NC_060926.1 CM039035.1 98.94 True local misassembly 92658169 92661229 92976981 92980041 NC_060926.1 CM039035.1 98.95 True relocation, inconsistency = -22761 92638533 92643813 92980106 92985387 NC_060926.1 CM039035.1 98.62 True relocation, inconsistency = 14606 92658420 92659929 92985388 92986897 NC_060926.1 CM039035.1 99.66 True local misassembly 92660272 92661729 92986898 92988355 NC_060926.1 CM039035.1 99.59 True local misassembly 92661730 92662648 92989035 92989953 NC_060926.1 CM039035.1 99.56 True local misassembly 92663490 92664207 92991135 92991852 NC_060926.1 CM039035.1 99.72 True indel: indel (<= 5bp) 92664208 92666929 92991854 92994575 NC_060926.1 CM039035.1 99.56 True relocation, inconsistency = 1018369 93685299 93690499 92994576 92999775 NC_060926.1 CM039035.1 97.98 True relocation, inconsistency = -1025842 92664658 92666307 92999776 93001425 NC_060926.1 CM039035.1 98.99 True local misassembly 92662649 92669754 93001838 93008945 NC_060926.1 CM039035.1 99.09 True local misassembly 92663643 92666307 93008946 93011611 NC_060926.1 CM039035.1 99.02 True local misassembly 92662649 92669754 93012024 93019131 NC_060926.1 CM039035.1 99.1 True relocation, inconsistency = -76105 92593784 92596243 93019266 93021724 NC_060926.1 CM039035.1 99.07 True relocation, inconsistency = 1048957 93645461 93646344 93021985 93022868 NC_060926.1 CM039035.1 99.1 True relocation, inconsistency = -1030265 92616214 92617128 93023003 93023917 NC_060926.1 CM039035.1 99.1 True relocation, inconsistency = -69833 92547296 92554901 93023918 93031522 NC_060926.1 CM039035.1 98.2 True relocation, inconsistency = 126569 92681471 92684505 93031523 93034556 NC_060926.1 CM039035.1 98.63 True local misassembly 92681106 92687090 93034557 93040541 NC_060926.1 CM039035.1 98.86 True local misassembly 92687771 92691847 93040542 93044618 NC_060926.1 CM039035.1 98.83 True relocation, inconsistency = -26854 92665417 92668336 93045042 93047961 NC_060926.1 CM039035.1 99.04 True relocation, inconsistency = 14617 92683146 92686411 93048154 93051418 NC_060926.1 CM039035.1 98.07 True indel: stretch of mismatches 92686546 92687905 93051553 93052912 NC_060926.1 CM039035.1 99.27 True local misassembly 92686546 92691847 93052913 93058213 NC_060926.1 CM039035.1 99.3 True relocation, inconsistency = -20736 92671112 92671928 93058214 93059030 NC_060926.1 CM039035.1 99.37 True local misassembly 92669209 92671248 93059031 93061070 NC_060926.1 CM039035.1 99.11 True relocation, inconsistency = 15297 92686546 92693210 93061071 93067734 NC_060926.1 CM039035.1 99.11 True relocation, inconsistency = 151541 92844886 92845565 93067869 93068547 NC_060926.1 CM039035.1 98.64 True relocation, inconsistency = -160380 92685186 92692002 93068548 93075362 NC_060926.1 CM039035.1 98.52 True local misassembly 92686595 92691869 93075735 93081009 NC_060926.1 CM039035.1 98.81 True local misassembly 92689151 92689794 93081010 93081653 NC_060926.1 CM039035.1 98.92 True relocation, inconsistency = -86480 92603731 92606561 93082070 93084900 NC_060926.1 CM039035.1 99.22 True relocation, inconsistency = 233774 92840470 92841828 93085035 93086393 NC_060926.1 CM039035.1 98.26 True relocation, inconsistency = -153923 92687906 92691869 93086394 93090357 NC_060926.1 CM039035.1 98.66 True local misassembly 92689151 92689794 93090358 93091001 NC_060926.1 CM039035.1 99.01 True relocation, inconsistency = -86480 92603731 92606561 93091418 93094248 NC_060926.1 CM039035.1 99.22 True relocation, inconsistency = 237510 92844072 92845383 93094249 93095560 NC_060926.1 CM039035.1 99.33 True local misassembly 92845571 92847470 93099148 93101048 NC_060926.1 CM039035.1 98.79 True relocation, inconsistency = -300544 92547066 92549598 93101188 93103720 NC_060926.1 CM039035.1 98.54 True relocation, inconsistency = 67792 92618253 92619465 93104583 93105795 NC_060926.1 CM039035.1 98.63 True relocation, inconsistency = 223576 92843042 92848845 93105796 93111600 NC_060926.1 CM039035.1 98.05 True relocation, inconsistency = -143040 92706082 92707830 93111877 93113625 NC_060926.1 CM039035.1 98.63 True relocation, inconsistency = -89712 92618253 92620462 93113760 93115969 NC_060926.1 CM039035.1 99.2 True relocation, inconsistency = 223238 92843701 92848845 93115970 93121115 NC_060926.1 CM039035.1 98.15 True relocation, inconsistency = -102632 92746461 92749493 93121363 93124395 NC_060926.1 CM039035.1 97.54 True relocation, inconsistency = 119284 92868778 92872614 93124396 93128231 NC_060926.1 CM039035.1 98.1 True relocation, inconsistency = -152894 92719721 92722588 93128232 93131098 NC_060926.1 CM039035.1 98.59 True fake: not a misassembly (possible transposable element) 92627761 92629120 93131423 93132782 NC_060926.1 CM039035.1 97.96 True fake: not a misassembly (possible transposable element) 92721553 92724295 93132783 93135524 NC_060926.1 CM039035.1 97.19 True local misassembly 92721067 92724637 93136030 93139599 NC_060926.1 CM039035.1 98.21 True relocation, inconsistency = -123353 92601378 92603644 93139693 93141961 NC_060926.1 CM039035.1 98.68 True relocation, inconsistency = 267414 92872085 92872737 93142988 93143640 NC_060926.1 CM039035.1 97.4 True indel: indel (<= 5bp) 92872739 92875684 93143641 93146586 NC_060926.1 CM039035.1 99.22 True local misassembly 92876023 92876823 93146587 93147387 NC_060926.1 CM039035.1 99.0 True local misassembly 92876824 92878447 93147729 93149352 NC_060926.1 CM039035.1 99.26 True local misassembly 92878945 92879870 93150190 93151115 NC_060926.1 CM039035.1 95.79 True local misassembly 92880049 92884827 93151631 93156409 NC_060926.1 CM039035.1 98.43 True fake: not a misassembly (possible transposable element) 92897224 92900796 93157936 93161506 NC_060926.1 CM039035.1 99.22 True fake: not a misassembly (possible transposable element) 92884300 92885316 93161653 93162670 NC_060926.1 CM039035.1 98.1 True fake: not a misassembly (possible transposable element) 92875127 92878548 93162671 93166091 NC_060926.1 CM039035.1 97.87 True fake: not a misassembly (possible transposable element) 92890233 92892448 93166564 93168778 NC_060926.1 CM039035.1 98.17 True relocation, inconsistency = 935290 93827739 93830457 93168779 93171493 NC_060926.1 CM039035.1 97.87 True relocation, inconsistency = -25827 93804631 93807716 93171494 93174578 NC_060926.1 CM039035.1 98.12 True relocation, inconsistency = -962464 92845253 92846245 93174579 93175570 NC_060926.1 CM039035.1 97.37 True relocation, inconsistency = -159020 92687226 92691170 93175571 93179515 NC_060926.1 CM039035.1 98.1 True local misassembly 92689812 92690738 93179516 93180442 NC_060926.1 CM039035.1 99.05 True relocation, inconsistency = -8326 92682474 92685051 93180504 93183080 NC_060926.1 CM039035.1 98.68 True relocation, inconsistency = 155964 92841016 92842193 93183081 93184258 NC_060926.1 CM039035.1 99.0 True relocation, inconsistency = 26506 92868793 92872614 93184352 93188172 NC_060926.1 CM039035.1 98.04 True fake: not a misassembly (possible transposable element) 92601378 92603644 93188427 93190695 NC_060926.1 CM039035.1 98.68 True fake: not a misassembly (possible transposable element) 92872085 92872737 93191722 93192374 NC_060926.1 CM039035.1 97.4 True indel: indel (<= 5bp) 92872739 92875684 93192375 93195320 NC_060926.1 CM039035.1 99.22 True local misassembly 92876023 92876823 93195321 93196121 NC_060926.1 CM039035.1 99.0 True local misassembly 92876824 92878447 93196463 93198086 NC_060926.1 CM039035.1 99.26 True local misassembly 92878945 92879870 93198924 93199849 NC_060926.1 CM039035.1 95.79 True local misassembly 92880049 92884827 93200365 93205143 NC_060926.1 CM039035.1 98.43 True relocation, inconsistency = 715313 93600719 93601665 93205722 93206668 NC_060926.1 CM039035.1 98.63 True relocation, inconsistency = -727204 92874463 92875702 93206670 93207909 NC_060926.1 CM039035.1 99.19 True relocation, inconsistency = 14269 92890081 92895699 93208019 93213635 NC_060926.1 CM039035.1 99.23 True relocation, inconsistency = -51640 92844206 92846745 93213782 93216320 NC_060926.1 CM039035.1 97.48 True relocation, inconsistency = 10535 92857294 92860180 93216334 93219220 NC_060926.1 CM039035.1 98.95 True relocation, inconsistency = -162077 92698104 92704088 93219221 93225204 NC_060926.1 CM039035.1 99.0 True relocation, inconsistency = 154260 92858716 92862407 93225572 93229263 NC_060926.1 CM039035.1 98.37 True local misassembly 92862747 92863828 93229264 93230345 NC_060926.1 CM039035.1 98.19 True relocation, inconsistency = -117585 92746244 92748835 93230346 93232937 NC_060926.1 CM039035.1 97.44 True local misassembly 92747818 92751623 93232938 93236744 NC_060926.1 CM039035.1 97.61 True relocation, inconsistency = 137288 92889397 92893332 93237230 93241167 NC_060926.1 CM039035.1 98.15 True relocation, inconsistency = -290175 92603296 92605881 93241306 93243891 NC_060926.1 CM039035.1 97.95 True relocation, inconsistency = 117915 92723797 92724465 93243892 93244560 NC_060926.1 CM039035.1 98.74 True local misassembly 92724466 92726334 93244899 93246767 NC_060926.1 CM039035.1 98.39 True relocation, inconsistency = 162409 92888846 92889938 93246870 93247962 NC_060926.1 CM039035.1 98.54 True relocation, inconsistency = -26163 92865093 92867859 93249280 93252046 NC_060926.1 CM039035.1 98.52 True fake: not a misassembly (possible transposable element) 92909305 92910333 93252047 93253075 NC_060926.1 CM039035.1 97.84 True fake: not a misassembly (possible transposable element) 92869168 92870723 93253360 93254915 NC_060926.1 CM039035.1 98.59 True relocation, inconsistency = 1030462 93902012 93903452 93255742 93257183 NC_060926.1 CM039035.1 98.4 True local misassembly 93904388 93905271 93258124 93259006 NC_060926.1 CM039035.1 98.08 True relocation, inconsistency = -105039 93800807 93802445 93259581 93261217 NC_060926.1 CM039035.1 97.44 True indel: stretch of mismatches 93802591 93803166 93261363 93261938 NC_060926.1 CM039035.1 97.76 True relocation, inconsistency = -76967 93726200 93727143 93261939 93262883 NC_060926.1 CM039035.1 97.98 True relocation, inconsistency = -1198260 92528884 92530324 93262884 93264323 NC_060926.1 CM039035.1 97.78 True relocation, inconsistency = 1270465 93800807 93802445 93264341 93265977 NC_060926.1 CM039035.1 97.44 True relocation, inconsistency = -107542 93694904 93695609 93265978 93266683 NC_060926.1 CM039035.1 97.9 True relocation, inconsistency = 85451 93781522 93784777 93267145 93270400 NC_060926.1 CM039035.1 97.61 True relocation, inconsistency = 83234 93868050 93870932 93270439 93273287 NC_060926.1 CM039035.1 96.27 True relocation, inconsistency = -1131018 92740030 92743229 93273403 93276602 NC_060926.1 CM039035.1 97.84 True relocation, inconsistency = 231044 92975344 92977405 93277673 93279735 NC_060926.1 CM039035.1 97.82 True relocation, inconsistency = -67264 92910276 92911551 93279870 93281147 NC_060926.1 CM039035.1 98.19 True indel: stretch of mismatches 92911552 92917494 93281148 93287093 NC_060926.1 CM039035.1 98.99 True relocation, inconsistency = 691538 93609590 93610138 93287651 93288199 NC_060926.1 CM039035.1 97.09 True indel: indel (<= 5bp) 93610139 93612275 93288201 93290337 NC_060926.1 CM039035.1 97.66 True indel: indel (<= 5bp) 93612276 93613943 93290339 93292006 NC_060926.1 CM039035.1 99.58 True local misassembly 93614286 93616132 93292007 93293853 NC_060926.1 CM039035.1 99.3 True relocation, inconsistency = -497527 93118606 93119838 93293854 93295087 NC_060926.1 CM039035.1 99.21 True relocation, inconsistency = -366630 92754149 92758305 93296028 93300185 NC_060926.1 CM039035.1 98.46 True relocation, inconsistency = 612287 93371242 93373567 93300835 93303161 NC_060926.1 CM039035.1 99.07 True relocation, inconsistency = -146120 93227448 93232591 93303162 93308305 NC_060926.1 CM039035.1 99.34 True local misassembly 93232592 93234737 93308644 93310789 NC_060926.1 CM039035.1 99.12 True relocation, inconsistency = -223570 93011168 93013773 93310790 93313395 NC_060926.1 CM039035.1 99.24 True relocation, inconsistency = 251109 93264883 93269791 93313396 93318304 NC_060926.1 CM039035.1 99.21 True fake: not a misassembly (possible transposable element) 93165832 93166725 93318305 93319199 NC_060926.1 CM039035.1 98.85 True fake: not a misassembly (possible transposable element) 93264883 93269323 93319507 93323947 NC_060926.1 CM039035.1 99.28 True relocation, inconsistency = 94813 93364824 93368082 93324635 93327893 NC_060926.1 CM039035.1 99.2 True local misassembly 93368421 93370223 93327894 93329696 NC_060926.1 CM039035.1 99.22 True relocation, inconsistency = 26824 93397048 93400074 93329697 93332720 NC_060926.1 CM039035.1 98.08 True relocation, inconsistency = 177163 93577238 93579766 93332721 93335251 NC_060926.1 CM039035.1 98.6 True relocation, inconsistency = 34978 93615041 93615575 93335548 93336082 NC_060926.1 CM039035.1 97.38 True indel: indel (<= 5bp) 93615667 93616266 93336172 93336771 NC_060926.1 CM039035.1 98.2 True relocation, inconsistency = -251528 93364739 93370718 93336772 93342751 NC_060926.1 CM039035.1 99.21 True indel: stretch of mismatches 93370853 93372550 93342886 93344583 NC_060926.1 CM039035.1 99.15 True fake: not a misassembly (possible transposable element) 93417018 93422190 93344584 93349756 NC_060926.1 CM039035.1 98.78 True fake: not a misassembly (possible transposable element) 93377728 93379342 93349757 93351372 NC_060926.1 CM039035.1 98.2 True relocation, inconsistency = 200928 93580271 93582984 93351373 93354086 NC_060926.1 CM039035.1 98.51 True relocation, inconsistency = -218246 93364739 93370718 93354087 93360066 NC_060926.1 CM039035.1 99.2 True indel: stretch of mismatches 93370853 93372257 93360201 93361605 NC_060926.1 CM039035.1 98.72 True relocation, inconsistency = 35306 93407564 93409970 93361606 93364012 NC_060926.1 CM039035.1 98.71 True relocation, inconsistency = -45832 93364739 93370718 93364613 93370592 NC_060926.1 CM039035.1 99.2 True indel: stretch of mismatches 93370853 93374148 93370727 93374022 NC_060926.1 CM039035.1 99.15 True fake: not a misassembly (possible transposable element) 93575759 93577973 93374023 93376237 NC_060926.1 CM039035.1 98.74 True fake: not a misassembly (possible transposable element) 93373491 93375005 93376416 93377929 NC_060926.1 CM039035.1 97.89 True relocation, inconsistency = 90792 93465798 93466375 93377930 93378507 NC_060926.1 CM039035.1 99.02 True fake: not a misassembly (possible transposable element) 93576885 93579032 93379898 93382047 NC_060926.1 CM039035.1 97.76 True fake: not a misassembly (possible transposable element) 93469909 93472405 93382048 93384544 NC_060926.1 CM039035.1 99.17 True relocation, inconsistency = 8823 93481229 93485931 93384545 93389246 NC_060926.1 CM039035.1 98.58 True relocation, inconsistency = 149539 93635471 93636343 93389247 93390119 NC_060926.1 CM039035.1 98.95 True local misassembly 93636686 93638876 93390120 93392310 NC_060926.1 CM039035.1 98.86 True relocation, inconsistency = -220632 93418368 93421458 93392434 93395524 NC_060926.1 CM039035.1 99.0 True local misassembly 93421459 93422190 93395863 93396594 NC_060926.1 CM039035.1 99.73 True local misassembly 93423033 93424209 93397433 93398609 NC_060926.1 CM039035.1 99.58 True local misassembly 93424210 93425406 93398951 93400147 NC_060926.1 CM039035.1 98.93 True relocation, inconsistency = 555169 93980576 93982614 93400148 93402186 NC_060926.1 CM039035.1 98.83 True relocation, inconsistency = 278251 94260866 94264247 93402187 93405568 NC_060926.1 CM039035.1 98.37 True relocation, inconsistency = -707513 93556735 93558075 93405569 93406908 NC_060926.1 CM039035.1 97.69 True relocation, inconsistency = -743238 92815641 92817010 93407712 93409081 NC_060926.1 CM039035.1 97.74 True local misassembly 92817349 92818028 93409082 93409761 NC_060926.1 CM039035.1 98.13 True relocation, inconsistency = 735764 93553793 93556715 93409762 93412682 NC_060926.1 CM039035.1 98.8 True local misassembly 93559942 93562622 93413191 93415872 NC_060926.1 CM039035.1 98.4 True relocation, inconsistency = 85894 93648517 93653473 93415873 93420830 NC_060926.1 CM039035.1 98.79 True relocation, inconsistency = -94043 93562623 93564186 93424023 93425586 NC_060926.1 CM039035.1 98.66 True relocation, inconsistency = 724673 94288994 94294584 93425721 93431311 NC_060926.1 CM039035.1 99.11 True local misassembly 94292209 94295155 93431312 93434258 NC_060926.1 CM039035.1 98.81 True local misassembly 94289576 94292340 93434450 93437214 NC_060926.1 CM039035.1 99.02 True local misassembly 94289625 94301837 93437215 93449073 NC_060926.1 CM039035.1 95.66 True relocation, inconsistency = 21945 94323783 94328052 93449074 93453343 NC_060926.1 CM039035.1 99.21 True local misassembly 94330090 94342866 93453344 93466124 NC_060926.1 CM039035.1 97.11 True relocation, inconsistency = -17671 94325196 94326085 93466125 93467014 NC_060926.1 CM039035.1 98.74 True indel: indel (<= 5bp) 94326087 94329848 93467015 93470776 NC_060926.1 CM039035.1 98.01 True local misassembly 94330089 94332467 93471189 93473567 NC_060926.1 CM039035.1 97.56 True indel: indel (<= 5bp) 94332469 94333147 93473568 93474246 NC_060926.1 CM039035.1 96.76 True local misassembly 94333813 94337907 93475253 93479347 NC_060926.1 CM039035.1 96.26 True relocation, inconsistency = 11559 94352124 94357868 93482005 93487753 NC_060926.1 CM039035.1 97.49 True relocation, inconsistency = -224223 94133646 94147852 93487754 93501969 NC_060926.1 CM039035.1 97.65 True relocation, inconsistency = 92256 94240109 94240666 93501970 93502527 NC_060926.1 CM039035.1 97.15 True indel: indel (<= 5bp) 94240668 94242289 93502528 93504149 NC_060926.1 CM039035.1 96.36 True indel: indel (<= 5bp) 94242292 94242962 93504150 93504820 NC_060926.1 CM039035.1 96.87 True relocation, inconsistency = 154747 94397782 94417707 93504893 93524811 NC_060926.1 CM039035.1 96.6 True relocation, inconsistency = -45548 94372160 94375077 93524812 93527729 NC_060926.1 CM039035.1 98.05 True local misassembly 94375556 94378382 93527867 93530693 NC_060926.1 CM039035.1 95.79 True indel: indel (<= 5bp) 94378384 94380565 93530694 93532875 NC_060926.1 CM039035.1 95.51 True local misassembly 94380566 94382800 93533218 93535452 NC_060926.1 CM039035.1 96.33 True indel: indel (<= 5bp) 94382801 94386233 93535454 93538886 NC_060926.1 CM039035.1 96.1 True relocation, inconsistency = 45894 94432651 94435179 93539410 93541938 NC_060926.1 CM039035.1 96.09 True relocation, inconsistency = 138487 94573752 94576966 93542024 93545237 NC_060926.1 CM039035.1 98.79 True relocation, inconsistency = -479633 94097380 94101288 93545284 93549192 NC_060926.1 CM039035.1 96.67 True local misassembly 94101289 94102685 93549535 93550931 NC_060926.1 CM039035.1 95.56 True relocation, inconsistency = 479976 94582892 94584393 93551162 93552663 NC_060926.1 CM039035.1 96.34 True local misassembly 94578954 94595670 93552664 93569378 NC_060926.1 CM039035.1 97.19 True relocation, inconsistency = -47252 94548419 94556125 93569379 93577085 NC_060926.1 CM039035.1 97.46 True relocation, inconsistency = 50654 94606780 94611755 93577086 93582060 NC_060926.1 CM039035.1 97.28 True indel: stretch of mismatches 94612041 94630016 93582346 93600492 NC_060926.1 CM039035.1 95.93 True relocation, inconsistency = -19886 94610728 94619908 93601090 93610441 NC_060926.1 CM039035.1 97.47 True relocation, inconsistency = -679245 93940714 93941710 93610492 93611488 NC_060926.1 CM039035.1 99.2 True local misassembly 93939087 93941292 93612259 93614466 NC_060926.1 CM039035.1 97.83 True relocation, inconsistency = 683325 94624788 94627315 93614637 93617164 NC_060926.1 CM039035.1 98.14 True local misassembly 94624752 94627315 93617321 93619884 NC_060926.1 CM039035.1 98.17 True relocation, inconsistency = -680096 93947220 93948042 93619885 93620707 NC_060926.1 CM039035.1 98.6 True indel: indel (<= 5bp) 93948043 93949752 93620709 93622418 NC_060926.1 CM039035.1 97.84 True local misassembly 93950095 93950810 93622419 93623134 NC_060926.1 CM039035.1 98.85 True relocation, inconsistency = 586780 94537591 94551347 93623135 93636889 NC_060926.1 CM039035.1 96.33 True relocation, inconsistency = -296642 94254706 94258674 93636890 93640858 NC_060926.1 CM039035.1 99.18 True local misassembly 94261394 94263003 93640859 93642468 NC_060926.1 CM039035.1 99.68 True relocation, inconsistency = -267717 93995287 94001774 93642469 93648960 NC_060926.1 CM039035.1 97.55 True relocation, inconsistency = -24634 93977141 93981093 93648961 93652913 NC_060926.1 CM039035.1 99.0 True relocation, inconsistency = 495545 94476639 94480278 93652914 93656553 NC_060926.1 CM039035.1 99.16 True local misassembly 94476608 94482040 93656618 93662049 NC_060926.1 CM039035.1 99.25 True relocation, inconsistency = -198266 94283866 94284934 93662141 93663209 NC_060926.1 CM039035.1 97.1 True indel: indel (<= 5bp) 94284936 94286777 93663210 93665051 NC_060926.1 CM039035.1 96.85 True local misassembly 94287120 94288983 93665052 93666915 NC_060926.1 CM039035.1 96.78 True local misassembly 94290156 94296977 93668085 93675075 NC_060926.1 CM039035.1 96.4 True local misassembly 94297691 94300316 93675095 93677720 NC_060926.1 CM039035.1 98.03 True relocation, inconsistency = -205676 94094641 94099769 93677721 93682849 NC_060926.1 CM039035.1 99.3 True local misassembly 94099770 94101257 93683192 93684679 NC_060926.1 CM039035.1 95.97 True relocation, inconsistency = 450058 94551979 94573524 93685343 93706883 NC_060926.1 CM039035.1 96.16 True relocation, inconsistency = -159907 94413618 94417227 93706884 93710495 NC_060926.1 CM039035.1 96.74 True relocation, inconsistency = 124554 94541782 94558798 93710496 93727171 NC_060926.1 CM039035.1 96.05 True local misassembly 94552000 94576631 93727172 93752148 NC_060926.1 CM039035.1 95.47 True local misassembly 94578963 94580131 93752441 93753609 NC_060926.1 CM039035.1 96.58 True indel: stretch of mismatches 94580450 94589238 93753928 93762716 NC_060926.1 CM039035.1 99.6 True relocation, inconsistency = -9519 94579720 94583304 93762717 93766301 NC_060926.1 CM039035.1 96.52 True local misassembly 94583305 94584481 93766643 93767819 NC_060926.1 CM039035.1 96.01 True indel: indel (<= 5bp) 94584482 94585248 93767821 93768587 NC_060926.1 CM039035.1 95.7 True local misassembly 94585249 94586148 93768930 93769829 NC_060926.1 CM039035.1 96.46 True local misassembly 94588189 94593718 93769830 93775357 NC_060926.1 CM039035.1 96.73 True local misassembly 94592359 94611755 93775358 93794752 NC_060926.1 CM039035.1 96.95 True local misassembly 94617197 94620370 93794753 93798097 NC_060926.1 CM039035.1 95.08 True relocation, inconsistency = -27709 94592873 94606298 93798309 93811732 NC_060926.1 CM039035.1 98.38 True indel: stretch of mismatches 94606623 94624352 93812057 93829957 NC_060926.1 CM039035.1 96.83 True local misassembly 94627073 94634177 93829958 93837065 NC_060926.1 CM039035.1 95.91 True local misassembly 94632574 94633198 93837158 93837782 NC_060926.1 CM039035.1 97.76 True indel: indel (<= 5bp) 94633199 94633950 93837787 93838538 NC_060926.1 CM039035.1 98.14 True indel: indel (<= 5bp) 94633999 94634763 93838582 93839346 NC_060926.1 CM039035.1 95.82 True relocation, inconsistency = 12232 94647189 94648079 93839540 93840430 NC_060926.1 CM039035.1 97.76 True indel: indel (<= 5bp) 94648080 94648583 93840435 93840938 NC_060926.1 CM039035.1 95.44 True local misassembly 94648926 94650725 93840939 93842738 NC_060926.1 CM039035.1 96.72 True relocation, inconsistency = -13257 94637469 94658994 93842739 93864949 NC_060926.1 CM039035.1 95.36 True relocation, inconsistency = 9855 94669628 94670917 93865728 93867017 NC_060926.1 CM039035.1 99.92 True indel: indel (<= 5bp) 94670918 94681332 93867019 93877433 NC_060926.1 CM039035.1 99.88 True indel: indel (<= 5bp) 94681334 94691971 93877434 93888071 NC_060926.1 CM039035.1 99.68 True relocation, inconsistency = -10590 94681382 94695021 93888072 93901711 NC_060926.1 CM039035.1 99.59 True relocation, inconsistency = 37549 94732571 95001412 94170905 93901712 NC_060926.1 CM039035.1 99.74 True relocation, scaffold gap is present, inconsistency = -202071 94799355 96003471 94170919 95375494 NC_060926.1 CM039035.1 99.82 True relocation, inconsistency = -82694 96003472 96086411 95458435 95375495 NC_060926.1 CM039035.1 99.72 True inversion 96086412 96268250 95458436 95640406 NC_060926.1 CM039035.1 99.73 True inversion 96306796 96569507 95903166 95640407 NC_060926.1 CM039035.1 99.68 True relocation, inconsistency = -38493 96531015 97695730 95903167 97067616 NC_060926.1 CM039035.1 99.89 True local misassembly 97697622 97821987 97067617 97191621 NC_060926.1 CM039035.1 99.41 True local misassembly 97821784 97899983 97192576 97270792 NC_060926.1 CM039035.1 99.74 True relocation, inconsistency = -325978 97574006 97574972 97270793 97271746 NC_060926.1 CM039035.1 98.17 True relocation, inconsistency = 136340 97711313 97821987 97382090 97271747 NC_060926.1 CM039035.1 99.36 True relocation, inconsistency = 175848 98004076 98079356 97388331 97463924 NC_060926.1 CM039035.1 99.02 True indel: indel (<= 5bp) 98079675 102810846 97464244 102195793 NC_060926.1 CM039035.1 99.75 True local misassembly 102811928 105284253 102197432 104669724 NC_060926.1 CM039035.1 99.92 True local misassembly 105285224 110999368 104671826 110384523 NC_060926.1 CM039035.1 99.67 True indel: indel (> 5bp) 110999751 111639882 110384832 111024830 NC_060926.1 CM039035.1 99.77 True local misassembly 111640566 112169123 111024831 111553786 NC_060926.1 CM039035.1 99.79 True indel: indel (<= 5bp) 112169178 118000726 111553837 117379157 NC_060926.1 CM039035.1 99.67 True local misassembly 118001533 119300897 117379158 118678431 NC_060926.1 CM039035.1 99.78 True indel: indel (> 5bp) 119301225 119877987 118678790 119255736 NC_060926.1 CM039035.1 99.8 True local misassembly 119878471 121159350 119256066 120536855 NC_060926.1 CM039035.1 99.91 True indel: indel (<= 5bp) 121159349 121734594 120536856 121112600 NC_060926.1 CM039035.1 99.63 True local misassembly 121735757 123669968 121112878 123046850 NC_060926.1 CM039035.1 99.78 True local misassembly 123670758 124119060 123047290 123494787 NC_060926.1 CM039035.1 99.63 True fake: scaffold gap size wrong estimation (local) 124121041 126172366 123497302 125540579 NC_060926.1 CM039035.1 99.39 True indel: indel (> 5bp) 126172554 126330637 125540689 125699802 NC_060926.1 CM039035.1 99.21 True local misassembly 126331080 126331969 125700567 125701454 NC_060926.1 CM039035.1 99.33 True indel: indel (> 5bp) 126332116 130490461 125701517 129870756 NC_060926.1 CM039035.1 99.56 True relocation, inconsistency = 1219995 131710463 131711139 129871439 129870763 NC_060926.1 CM039035.1 96.75 True local misassembly 131708737 131710500 129874336 129872573 NC_060926.1 CM039035.1 98.19 True local misassembly 131706527 131707426 129876011 129875112 NC_060926.1 CM039035.1 98.33 True local misassembly 131677565 131706090 129905613 129877088 NC_060926.1 CM039035.1 98.89 True relocation, inconsistency = 683747 130529257 130993817 129905614 130370201 NC_060926.1 CM039035.1 99.87 True fake: not a misassembly (possible transposable element) 130993818 130994725 130371109 130370202 NC_060926.1 CM039035.1 100.0 True fake: not a misassembly (possible transposable element) 130994726 131291397 130371110 130667635 NC_060926.1 CM039035.1 99.87 True local misassembly 131294876 132226883 130667636 131602339 NC_060926.1 CM039035.1 99.5 True local misassembly 132226983 136475597 131602657 135845511 NC_060926.1 CM039035.1 99.68 True indel: indel (<= 5bp) 136475623 136790356 135845539 136160096 NC_060926.1 CM039035.1 99.77 True local misassembly 136792625 148048162 136162201 147416010 NC_060926.1 CM039035.1 99.83 True indel: indel (> 5bp) 148048276 152052873 147416078 151419209 NC_060926.1 CM039035.1 99.81 True indel: indel (> 5bp) 152053053 155391289 151419398 154756131 NC_060926.1 CM039035.1 99.76 True local misassembly 155391541 159222571 154756235 158586078 NC_060926.1 CM039035.1 99.86 True local misassembly 159222568 160768667 158586886 160127666 NC_060926.1 CM039035.1 99.3 True indel: indel (<= 5bp) 160768705 161048157 160127700 160407009 NC_060926.1 CM039035.1 99.77 True indel: indel (> 5bp) 161048160 163394042 160407051 162752607 NC_060926.1 CM039035.1 99.93 True indel: indel (> 5bp) 163394337 166123650 162752974 165481941 NC_060926.1 CM039035.1 99.88 True local misassembly 166123687 166871482 165482166 166229599 NC_060926.1 CM039035.1 99.8 True local misassembly 166871583 168846517 166229824 168205066 NC_060926.1 CM039035.1 99.86 True indel: indel (> 5bp) 168846658 169961599 168205181 169320110 NC_060926.1 CM039035.1 99.73 True local misassembly 169962238 172528542 169320111 171883066 NC_060926.1 CM039035.1 99.64 True local misassembly 172529111 176205366 171883433 175554632 NC_060926.1 CM039035.1 99.62 True indel: indel (> 5bp) 176205451 185020064 175554706 184366208 NC_060926.1 CM039035.1 99.71 True indel: indel (> 5bp) 185020135 192187524 184366251 191534292 NC_060926.1 CM039035.1 99.82 True local misassembly 192188204 194976978 191535088 194327839 NC_060926.1 CM039035.1 99.34 True local misassembly 194977638 195188527 194328859 194539774 NC_060926.1 CM039035.1 99.79 True local misassembly 195189287 197392835 194540063 196744728 NC_060926.1 CM039035.1 99.83 True indel: stretch of mismatches 197392836 203733300 196744729 203084041 NC_060926.1 CM039035.1 99.88 True indel: indel (> 5bp) 203733634 205827981 203084321 205179035 NC_060926.1 CM039035.1 99.82 True fake: not a misassembly (possible transposable element) 17311968 17312730 205182151 205181392 NC_060948.1 CM039035.1 96.59 True fake: not a misassembly (possible transposable element) 205828189 205862604 205182590 205216985 NC_060926.1 CM039035.1 99.51 True local misassembly 205863195 207968559 205217679 207328640 NC_060926.1 CM039035.1 99.47 True relocation, inconsistency = -8192 207968644 209557889 207336917 208924824 NC_060926.1 CM039035.1 99.57 True local misassembly 209563799 211698420 208924825 211059246 NC_060926.1 CM039035.1 99.8 True local misassembly 211698060 212854452 211060016 212216726 NC_060926.1 CM039035.1 99.82 True indel: indel (> 5bp) 212854479 214318183 212216727 213680842 NC_060926.1 CM039035.1 99.76 True indel: indel (> 5bp) 214318303 214345082 213681030 213707832 NC_060926.1 CM039035.1 99.51 True indel: indel (> 5bp) 214345205 215321277 213707987 214684107 NC_060926.1 CM039035.1 99.79 True indel: indel (<= 5bp) 215321356 218293032 214684191 217656812 NC_060926.1 CM039035.1 99.56 True local misassembly 218293652 219676050 217657004 219038718 NC_060926.1 CM039035.1 99.74 True local misassembly 219676285 220606256 219042610 219972144 NC_060926.1 CM039035.1 99.83 True indel: indel (> 5bp) 220606405 222601429 219972325 221967288 NC_060926.1 CM039035.1 99.8 True indel: indel (> 5bp) 222601632 227528490 221967501 226886172 NC_060926.1 CM039035.1 99.49 True indel: indel (> 5bp) 227528835 227676616 226886437 227034237 NC_060926.1 CM039035.1 99.77 True indel: indel (> 5bp) 227676625 232314175 227034238 231668671 NC_060926.1 CM039035.1 99.41 True local misassembly 232319427 232320106 231670035 231670714 NC_060926.1 CM039035.1 98.97 True local misassembly 232320197 232321214 231670715 231671732 NC_060926.1 CM039035.1 99.21 True local misassembly 232321431 232954813 231672176 232305480 NC_060926.1 CM039035.1 99.21 True local misassembly 232955576 234846973 232305499 234195540 NC_060926.1 CM039035.1 99.7 True indel: indel (> 5bp) 234847050 235030904 234195597 234379403 NC_060926.1 CM039035.1 99.76 True local misassembly 235031267 235391032 234379534 234737931 NC_060926.1 CM039035.1 99.41 True indel: indel (> 5bp) 235391170 238033842 234738002 237382193 NC_060926.1 CM039035.1 99.64 True local misassembly 238034854 239360793 237386062 238713260 NC_060926.1 CM039035.1 99.64 True local misassembly 239361562 240198073 238716716 239554122 NC_060926.1 CM039035.1 99.53 True local misassembly 240199380 240601165 239554344 239955505 NC_060926.1 CM039035.1 98.89 True indel: indel (<= 5bp) 240601235 241120552 239955574 240474389 NC_060926.1 CM039035.1 99.71 True local misassembly 241122256 241123867 240475120 240476731 NC_060926.1 CM039035.1 99.88 True indel: indel (> 5bp) 241123868 241128279 240476742 240481153 NC_060926.1 CM039035.1 99.84 True indel: indel (> 5bp) 241128632 241132000 240481457 240484825 NC_060926.1 CM039035.1 99.94 True indel: indel (> 5bp) 241132017 241134832 240484826 240487641 NC_060926.1 CM039035.1 99.86 True indel: indel (<= 5bp) 241134833 241136407 240487643 240489217 NC_060926.1 CM039035.1 99.49 True local misassembly 241137232 241182683 240490098 240535355 NC_060926.1 CM039035.1 98.96 True relocation, inconsistency = -11938 241182684 241185888 240538560 240535356 NC_060926.1 CM039035.1 95.69 True inversion 241185889 241277706 240538561 240630603 NC_060926.1 CM039035.1 99.35 True indel: indel (> 5bp) 241277775 241424983 240630724 240774810 NC_060926.1 CM039035.1 96.49 True indel: indel (> 5bp) 241425009 241484306 240774817 240835713 NC_060926.1 CM039035.1 95.91 True local misassembly 241484381 241551654 240836037 240903408 NC_060926.1 CM039035.1 99.54 True local misassembly 241551936 242307756 240903582 241658585 NC_060926.1 CM039035.1 99.62 True local misassembly 242309060 242376598 241660578 241729565 NC_060926.1 CM039035.1 96.95 True local misassembly 242376944 242390727 241729751 241743358 NC_060926.1 CM039035.1 95.46 True local misassembly 242391499 242392082 241744989 241745572 NC_060926.1 CM039035.1 99.83 True indel: indel (> 5bp) 242392121 242394718 241745573 241748170 NC_060926.1 CM039035.1 99.92 True indel: indel (<= 5bp) 242394719 242398084 241748174 241751539 NC_060926.1 CM039035.1 99.82 True indel: indel (<= 5bp) 242398085 242399473 241751543 241752931 NC_060926.1 CM039035.1 100.0 True indel: indel (<= 5bp) 242399475 242400011 241752932 241753468 NC_060926.1 CM039035.1 99.81 True local misassembly 242404654 242406457 241755762 241757565 NC_060926.1 CM039035.1 99.56 True indel: indel (<= 5bp) 242406458 242410158 241757568 241761268 NC_060926.1 CM039035.1 99.92 True local misassembly 242410278 242416812 241761269 241767803 NC_060926.1 CM039035.1 99.86 True indel: indel (<= 5bp) 242416813 242418234 241767805 241769226 NC_060926.1 CM039035.1 99.65 True indel: indel (<= 5bp) 242418236 242419185 241769227 241770176 NC_060926.1 CM039035.1 99.79 True indel: indel (> 5bp) 242419231 242419787 241770216 241770772 NC_060926.1 CM039035.1 99.82 True indel: indel (> 5bp) 242419797 242424626 241770773 241775602 NC_060926.1 CM039035.1 99.77 True indel: indel (<= 5bp) 242424628 242429512 241775603 241780487 NC_060926.1 CM039035.1 99.82 True local misassembly 242430467 242432405 241781345 241783283 NC_060926.1 CM039035.1 100.0 True indel: indel (> 5bp) 242432566 242436268 241783435 241787137 NC_060926.1 CM039035.1 99.76 True local misassembly 242437089 242694129 241787749 242045849 NC_060926.1 CM039035.1 97.14 True CONTIG CM039035.1 242054856 misassembled 2584 1167109 8906 1173306 NC_060927.1 CM039036.1 99.61 True indel: stretch of mismatches 1167110 3229691 1173307 3237068 NC_060927.1 CM039036.1 99.58 True indel: indel (> 5bp) 3229819 4267472 3237123 4274130 NC_060927.1 CM039036.1 99.69 True indel: indel (> 5bp) 4267541 6262302 4274182 6269460 NC_060927.1 CM039036.1 99.73 True indel: stretch of mismatches 6262436 6603242 6269594 6609721 NC_060927.1 CM039036.1 99.46 True local misassembly 6603328 7563759 6614218 7574036 NC_060927.1 CM039036.1 99.65 True local misassembly 7563844 28367456 7574432 28381051 NC_060927.1 CM039036.1 99.71 True indel: stretch of mismatches 28367919 34667387 28381514 34682618 NC_060927.1 CM039036.1 99.8 True indel: stretch of mismatches 34667417 36301213 34682648 36316323 NC_060927.1 CM039036.1 99.83 True local misassembly 36302175 36454948 36316995 36470184 NC_060927.1 CM039036.1 99.52 True local misassembly 36454996 38088689 36470370 38104767 NC_060927.1 CM039036.1 99.72 True local misassembly 38089954 39733157 38106368 39749441 NC_060927.1 CM039036.1 99.83 True local misassembly 39733671 40218231 39749751 40234005 NC_060927.1 CM039036.1 99.49 True local misassembly 40219257 40227228 40234979 40242962 NC_060927.1 CM039036.1 99.22 True indel: indel (> 5bp) 40227339 41310656 40243097 41326402 NC_060927.1 CM039036.1 99.84 True indel: indel (<= 5bp) 41310658 41574786 41326403 41590102 NC_060927.1 CM039036.1 99.44 True local misassembly 41576861 48239236 41590103 48253016 NC_060927.1 CM039036.1 99.87 True local misassembly 48240288 49968717 48254125 49981963 NC_060927.1 CM039036.1 99.8 True local misassembly 49968569 51045702 49982581 51059822 NC_060927.1 CM039036.1 99.69 True local misassembly 51046375 55067760 51060347 55081166 NC_060927.1 CM039036.1 99.8 True indel: indel (> 5bp) 55068001 56554696 55081478 56568304 NC_060927.1 CM039036.1 99.76 True local misassembly 56554839 57594507 56568568 57609000 NC_060927.1 CM039036.1 99.65 True indel: indel (<= 5bp) 57594663 60027870 57609158 60042473 NC_060927.1 CM039036.1 99.88 True local misassembly 60028200 60593404 60042940 60607891 NC_060927.1 CM039036.1 99.8 True local misassembly 60593973 60902736 60608775 60917468 NC_060927.1 CM039036.1 99.82 True local misassembly 60904439 64358592 60919100 64372965 NC_060927.1 CM039036.1 99.8 True local misassembly 64358737 66118887 64373436 66133609 NC_060927.1 CM039036.1 99.78 True local misassembly 66118309 69174645 66133610 69186139 NC_060927.1 CM039036.1 99.75 True local misassembly 69174931 75572181 69186229 75582660 NC_060927.1 CM039036.1 99.81 True local misassembly 75576613 75577189 75585715 75586291 NC_060927.1 CM039036.1 96.19 True local misassembly 75577993 75578616 75587101 75587724 NC_060927.1 CM039036.1 96.63 True local misassembly 75579315 75580229 75588371 75589285 NC_060927.1 CM039036.1 97.38 True local misassembly 75582757 75583705 75591794 75592742 NC_060927.1 CM039036.1 96.52 True local misassembly 75584208 75585053 75593260 75594105 NC_060927.1 CM039036.1 96.1 True local misassembly 75586466 75587044 75595533 75596111 NC_060927.1 CM039036.1 95.34 True indel: indel (> 5bp) 75587355 75587897 75596416 75596958 NC_060927.1 CM039036.1 97.24 True local misassembly 75588383 75590808 75597830 75600255 NC_060927.1 CM039036.1 96.38 True local misassembly 75592129 75592824 75601590 75602285 NC_060927.1 CM039036.1 96.7 True indel: indel (> 5bp) 75593301 75595004 75602768 75604476 NC_060927.1 CM039036.1 95.73 True indel: indel (> 5bp) 75595219 75596168 75604739 75605688 NC_060927.1 CM039036.1 95.79 True indel: indel (<= 5bp) 75596230 75597132 75605748 75606651 NC_060927.1 CM039036.1 95.58 True indel: indel (> 5bp) 75597373 75624447 75606910 75634325 NC_060927.1 CM039036.1 96.18 True indel: indel (> 5bp) 75624604 76970190 75634432 76980555 NC_060927.1 CM039036.1 99.75 True local misassembly 76970266 82973285 76980805 82982684 NC_060927.1 CM039036.1 99.77 True local misassembly 82973296 90652874 82982845 90644693 NC_060927.1 CM039036.1 99.41 True local misassembly 90647455 90861872 90644694 90859450 NC_060927.1 CM039036.1 99.64 True relocation, inconsistency = 10194 90872067 90886280 90859451 90873663 NC_060927.1 CM039036.1 95.56 True relocation, inconsistency = 62847 90949334 91068839 90873870 90993546 NC_060927.1 CM039036.1 97.65 True relocation, inconsistency = -37369 91031471 91068839 90993547 91030916 NC_060927.1 CM039036.1 98.39 True relocation, inconsistency = -94274 90974704 91054539 91031055 91110894 NC_060927.1 CM039036.1 98.34 True relocation, inconsistency = 35673 91090213 91205124 91110895 91225801 NC_060927.1 CM039036.1 98.56 True relocation, inconsistency = 105314 91311283 91314680 91226646 91230043 NC_060927.1 CM039036.1 97.38 True relocation, inconsistency = -90878 91223803 91225482 91230044 91231723 NC_060927.1 CM039036.1 96.89 True local misassembly 91228031 91303644 91231724 91307346 NC_060927.1 CM039036.1 98.22 True local misassembly 91304488 91307041 91308191 91310745 NC_060927.1 CM039036.1 98.24 True local misassembly 91307996 91310439 91311701 91314144 NC_060927.1 CM039036.1 98.08 True local misassembly 91311283 91314680 91314989 91318386 NC_060927.1 CM039036.1 97.73 True indel: indel (<= 5bp) 91315000 91316362 91318705 91320067 NC_060927.1 CM039036.1 96.18 True relocation, inconsistency = -8497 91307866 91310439 91320068 91322641 NC_060927.1 CM039036.1 97.9 True local misassembly 91317344 91319786 91322749 91325191 NC_060927.1 CM039036.1 96.4 True relocation, inconsistency = 14441 91334468 91335573 91325432 91326537 NC_060927.1 CM039036.1 96.84 True indel: indel (<= 5bp) 91335951 91380750 91326916 91371717 NC_060927.1 CM039036.1 97.23 True relocation, inconsistency = -43323 91337428 91338364 91371718 91372654 NC_060927.1 CM039036.1 98.98 True indel: indel (<= 5bp) 91338366 91340063 91372655 91374352 NC_060927.1 CM039036.1 99.18 True indel: indel (<= 5bp) 91340064 91343314 91374354 91377604 NC_060927.1 CM039036.1 98.92 True indel: indel (<= 5bp) 91343318 91345159 91377605 91379446 NC_060927.1 CM039036.1 96.09 True indel: indel (<= 5bp) 91345160 91346727 91379448 91381015 NC_060927.1 CM039036.1 96.81 True relocation, inconsistency = 11044 91357772 91358750 91381016 91381994 NC_060927.1 CM039036.1 98.57 True indel: indel (<= 5bp) 91358752 91362148 91381995 91385391 NC_060927.1 CM039036.1 98.94 True indel: indel (<= 5bp) 91362150 91362848 91385392 91386090 NC_060927.1 CM039036.1 98.86 True indel: indel (<= 5bp) 91362849 91365545 91386092 91388788 NC_060927.1 CM039036.1 98.81 True indel: indel (<= 5bp) 91365547 91366245 91388789 91389487 NC_060927.1 CM039036.1 98.71 True indel: indel (<= 5bp) 91366246 91370641 91389489 91393884 NC_060927.1 CM039036.1 98.66 True indel: indel (<= 5bp) 91370643 91374039 91393885 91397281 NC_060927.1 CM039036.1 98.65 True indel: indel (<= 5bp) 91374041 91375339 91397282 91398580 NC_060927.1 CM039036.1 97.15 True indel: indel (<= 5bp) 91375341 91377039 91398581 91400279 NC_060927.1 CM039036.1 96.17 True indel: indel (<= 5bp) 91377041 91378100 91400280 91401339 NC_060927.1 CM039036.1 96.42 True indel: indel (<= 5bp) 91378101 91378738 91401341 91401978 NC_060927.1 CM039036.1 95.61 True indel: indel (<= 5bp) 91378740 91380438 91401979 91403677 NC_060927.1 CM039036.1 96.41 True indel: indel (<= 5bp) 91380440 91381499 91403678 91404737 NC_060927.1 CM039036.1 96.32 True indel: indel (<= 5bp) 91381500 91382137 91404739 91405376 NC_060927.1 CM039036.1 95.77 True indel: indel (<= 5bp) 91382139 91383837 91405377 91407075 NC_060927.1 CM039036.1 96.12 True indel: indel (<= 5bp) 91383839 91384898 91407076 91408135 NC_060927.1 CM039036.1 96.7 True indel: indel (<= 5bp) 91384899 91385536 91408137 91408774 NC_060927.1 CM039036.1 95.77 True indel: indel (<= 5bp) 91385538 91386636 91408775 91409873 NC_060927.1 CM039036.1 96.36 True indel: indel (<= 5bp) 91386638 91387236 91409874 91410472 NC_060927.1 CM039036.1 96.49 True indel: indel (<= 5bp) 91387238 91388297 91410473 91411532 NC_060927.1 CM039036.1 95.85 True indel: indel (<= 5bp) 91388298 91388935 91411534 91412171 NC_060927.1 CM039036.1 96.08 True indel: indel (<= 5bp) 91388937 91390635 91412172 91413870 NC_060927.1 CM039036.1 95.94 True indel: indel (<= 5bp) 91390637 91391696 91413871 91414930 NC_060927.1 CM039036.1 96.42 True indel: indel (<= 5bp) 91391697 91392334 91414932 91415569 NC_060927.1 CM039036.1 96.24 True indel: indel (<= 5bp) 91392336 91394034 91415570 91417268 NC_060927.1 CM039036.1 96.0 True indel: indel (<= 5bp) 91394036 91395095 91417269 91418328 NC_060927.1 CM039036.1 96.32 True indel: indel (<= 5bp) 91395096 91395733 91418330 91418967 NC_060927.1 CM039036.1 95.45 True indel: indel (<= 5bp) 91395735 91396487 91418968 91419720 NC_060927.1 CM039036.1 96.41 True indel: indel (<= 5bp) 91396489 91397405 91419721 91420637 NC_060927.1 CM039036.1 96.95 True local misassembly 91397963 91398494 91420853 91421384 NC_060927.1 CM039036.1 99.25 True indel: indel (<= 5bp) 91398495 91401893 91421386 91424784 NC_060927.1 CM039036.1 98.44 True indel: indel (<= 5bp) 91401894 91403592 91424786 91426484 NC_060927.1 CM039036.1 98.59 True indel: indel (<= 5bp) 91403594 91405292 91426485 91428183 NC_060927.1 CM039036.1 98.47 True indel: indel (<= 5bp) 91405293 91406991 91428185 91429883 NC_060927.1 CM039036.1 98.53 True indel: indel (<= 5bp) 91406993 91408691 91429884 91431582 NC_060927.1 CM039036.1 98.47 True indel: indel (<= 5bp) 91408692 91410390 91431584 91433282 NC_060927.1 CM039036.1 98.53 True indel: indel (<= 5bp) 91410392 91422287 91433283 91445178 NC_060927.1 CM039036.1 99.67 True indel: indel (<= 5bp) 91422289 91423987 91445179 91446877 NC_060927.1 CM039036.1 98.35 True indel: indel (<= 5bp) 91423988 91425686 91446879 91448577 NC_060927.1 CM039036.1 98.71 True indel: indel (<= 5bp) 91425688 91427959 91448578 91450849 NC_060927.1 CM039036.1 97.14 True indel: indel (<= 5bp) 91428151 91429083 91451044 91451976 NC_060927.1 CM039036.1 97.21 True indel: indel (<= 5bp) 91429084 91430782 91451978 91453676 NC_060927.1 CM039036.1 98.65 True indel: indel (<= 5bp) 91430784 91433055 91453677 91455948 NC_060927.1 CM039036.1 97.18 True indel: indel (<= 5bp) 91433247 91434179 91456143 91457075 NC_060927.1 CM039036.1 97.75 True local misassembly 91434946 91435878 91457840 91458772 NC_060927.1 CM039036.1 96.89 True indel: indel (<= 5bp) 91435880 91437578 91458773 91460471 NC_060927.1 CM039036.1 98.59 True indel: indel (<= 5bp) 91437579 91439277 91460473 91462171 NC_060927.1 CM039036.1 98.59 True indel: indel (<= 5bp) 91439279 91443250 91462172 91466143 NC_060927.1 CM039036.1 98.24 True indel: indel (<= 5bp) 91443442 91444947 91466338 91467843 NC_060927.1 CM039036.1 97.41 True indel: indel (<= 5bp) 91445141 91446525 91468035 91469419 NC_060927.1 CM039036.1 97.26 True indel: stretch of mismatches 91446576 91754229 91469470 91776459 NC_060927.1 CM039036.1 99.52 True local misassembly 91750326 91758602 91776460 91784735 NC_060927.1 CM039036.1 99.5 True relocation, inconsistency = 8332 91766935 91875299 91784736 91894130 NC_060927.1 CM039036.1 96.36 True relocation, scaffold gap is present, inconsistency = 617250 92493686 92499727 91895267 91901309 NC_060927.1 CM039036.1 99.4 True relocation, inconsistency = -303210 92197300 92382852 91902092 92087658 NC_060927.1 CM039036.1 99.52 True relocation, inconsistency = -132644 92250746 92316359 92088196 92153137 NC_060927.1 CM039036.1 98.42 True relocation, inconsistency = 555429 92872262 92897574 92153611 92178927 NC_060927.1 CM039036.1 99.54 True relocation, inconsistency = -349310 92548265 92556644 92178928 92187306 NC_060927.1 CM039036.1 99.51 True relocation, inconsistency = -41679 92514966 92530568 92187307 92202570 NC_060927.1 CM039036.1 98.29 True relocation, inconsistency = 338947 92869516 92901277 92202571 92233999 NC_060927.1 CM039036.1 98.48 True relocation, inconsistency = -364930 92536348 92545962 92234000 92243312 NC_060927.1 CM039036.1 97.89 True local misassembly 92547839 92550730 92243313 92246203 NC_060927.1 CM039036.1 99.68 True local misassembly 92547839 92569169 92246204 92267535 NC_060927.1 CM039036.1 99.72 True local misassembly 92566279 92592103 92267536 92293360 NC_060927.1 CM039036.1 99.84 True relocation, inconsistency = -92376 92499728 92506294 92293361 92299930 NC_060927.1 CM039036.1 99.5 True relocation, inconsistency = 75365 92581660 92603491 92299931 92321767 NC_060927.1 CM039036.1 99.69 True relocation, inconsistency = 44943 92648435 92661513 92321768 92334848 NC_060927.1 CM039036.1 99.43 True relocation, inconsistency = 53992 92715506 92721248 92334849 92340591 NC_060927.1 CM039036.1 99.54 True relocation, inconsistency = 11390 92732639 92747829 92340592 92355785 NC_060927.1 CM039036.1 99.6 True relocation, inconsistency = -107890 92639940 92643924 92355786 92359607 NC_060927.1 CM039036.1 95.97 True relocation, inconsistency = 155476 92799436 92800050 92359643 92360257 NC_060927.1 CM039036.1 99.84 True local misassembly 92800051 92802643 92360636 92363228 NC_060927.1 CM039036.1 99.64 True relocation, inconsistency = -49089 92753555 92760678 92363229 92370352 NC_060927.1 CM039036.1 99.68 True local misassembly 92756427 92764609 92370353 92378535 NC_060927.1 CM039036.1 99.77 True fake: not a misassembly (possible transposable element) 92701067 92703499 92378536 92380968 NC_060927.1 CM039036.1 98.66 True fake: not a misassembly (possible transposable element) 92763629 92772108 92381846 92389947 NC_060927.1 CM039036.1 95.25 True relocation, inconsistency = 7799 92780105 92791386 92390145 92401673 NC_060927.1 CM039036.1 97.52 True relocation, inconsistency = 1203854 93995847 93998921 92402280 92405350 NC_060927.1 CM039036.1 97.49 True relocation, inconsistency = -1234603 92764319 92772108 92405351 92413140 NC_060927.1 CM039036.1 99.64 True relocation, inconsistency = 7799 92780105 92783870 92413338 92417103 NC_060927.1 CM039036.1 99.34 True relocation, inconsistency = -142871 92641008 92641890 92417112 92417994 NC_060927.1 CM039036.1 96.49 True local misassembly 92642017 92642532 92417995 92418510 NC_060927.1 CM039036.1 98.64 True relocation, inconsistency = 10379 92652924 92661513 92418523 92427113 NC_060927.1 CM039036.1 99.72 True relocation, inconsistency = -52219 92609295 92612759 92427114 92430578 NC_060927.1 CM039036.1 99.45 True relocation, inconsistency = 148998 92761758 92768609 92430579 92437430 NC_060927.1 CM039036.1 99.23 True relocation, inconsistency = -75525 92693085 92694899 92437431 92439245 NC_060927.1 CM039036.1 98.97 True relocation, inconsistency = 85205 92780105 92790927 92439246 92450315 NC_060927.1 CM039036.1 97.46 True relocation, inconsistency = -56903 92734025 92738472 92450316 92454763 NC_060927.1 CM039036.1 99.23 True relocation, inconsistency = -7780 92730693 92747829 92454764 92471898 NC_060927.1 CM039036.1 99.68 True relocation, inconsistency = 47922 92795752 92799435 92471899 92475582 NC_060927.1 CM039036.1 98.97 True local misassembly 92799436 92800050 92475919 92476533 NC_060927.1 CM039036.1 99.84 True local misassembly 92800051 92802643 92476912 92479504 NC_060927.1 CM039036.1 99.68 True relocation, inconsistency = -49089 92753555 92764564 92479505 92490136 NC_060927.1 CM039036.1 96.35 True local misassembly 92760500 92765790 92490148 92495438 NC_060927.1 CM039036.1 99.49 True translocation 1477402 1479267 92495439 92497304 NC_060939.1 CM039036.1 96.61 True translocation 92756698 92764564 92497305 92505171 NC_060927.1 CM039036.1 99.76 True local misassembly 92760500 92765790 92505183 92510473 NC_060927.1 CM039036.1 99.49 True local misassembly 92760959 92762966 92510474 92512481 NC_060927.1 CM039036.1 99.43 True local misassembly 92767854 92768730 92512482 92513358 NC_060927.1 CM039036.1 99.65 True local misassembly 92763629 92772108 92513359 92521460 NC_060927.1 CM039036.1 95.26 True local misassembly 92765972 92772108 92522264 92528400 NC_060927.1 CM039036.1 99.15 True relocation, inconsistency = 7799 92780105 92790484 92528598 92539219 NC_060927.1 CM039036.1 97.0 True relocation, inconsistency = -55411 92735074 92736804 92539220 92540950 NC_060927.1 CM039036.1 97.94 True local misassembly 92738638 92740419 92540951 92542735 NC_060927.1 CM039036.1 95.83 True relocation, inconsistency = 23209 92763629 92772108 92542736 92551214 NC_060927.1 CM039036.1 99.71 True relocation, inconsistency = 7799 92780105 92791386 92551412 92562940 NC_060927.1 CM039036.1 97.55 True fake: not a misassembly (possible transposable element) 92735230 92739020 92562941 92566731 NC_060927.1 CM039036.1 99.3 True fake: not a misassembly (possible transposable element) 92800410 92810879 92566732 92577290 NC_060927.1 CM039036.1 98.63 True local misassembly 92809967 92817316 92577291 92584640 NC_060927.1 CM039036.1 99.47 True local misassembly 92823241 92826975 92584641 92588381 NC_060927.1 CM039036.1 97.61 True relocation, inconsistency = -18210 92809059 92817316 92588675 92596932 NC_060927.1 CM039036.1 99.53 True fake: not a misassembly (possible transposable element) 92862353 92864414 92596933 92599000 NC_060927.1 CM039036.1 97.66 True fake: not a misassembly (possible transposable element) 92815634 92823716 92599001 92607081 NC_060927.1 CM039036.1 98.21 True relocation, inconsistency = 1857250 94680967 94682060 92607082 92608175 NC_060927.1 CM039036.1 98.52 True relocation, inconsistency = -1947966 92734825 92735465 92608906 92609541 NC_060927.1 CM039036.1 97.8 True relocation, inconsistency = 2127102 94862568 94875602 92609542 92622913 NC_060927.1 CM039036.1 95.94 True local misassembly 94876786 94879525 92624099 92626838 NC_060927.1 CM039036.1 98.78 True relocation, inconsistency = -1080759 93798767 93803505 92626839 92631576 NC_060927.1 CM039036.1 98.38 True relocation, inconsistency = -111057 93692449 93692963 92631577 92632091 NC_060927.1 CM039036.1 97.36 True relocation, inconsistency = -489800 93203164 93204851 92632092 92633779 NC_060927.1 CM039036.1 99.07 True relocation, inconsistency = 511113 93715965 93719026 92633780 92636841 NC_060927.1 CM039036.1 99.25 True relocation, inconsistency = 1133448 94852476 94856181 92636843 92640543 NC_060927.1 CM039036.1 98.79 True translocation 2963993 2965753 92641005 92642759 NC_060946.1 CM039036.1 97.1 True translocation 1447820 1448643 92642760 92643583 NC_060939.1 CM039036.1 96.12 True local misassembly 1449195 1450506 92644135 92645446 NC_060939.1 CM039036.1 97.1 True translocation 95345981 95347908 92646687 92648614 NC_060927.1 CM039036.1 95.95 True indel: indel (<= 5bp) 95347910 95348967 92648615 92649672 NC_060927.1 CM039036.1 96.41 True fake: not a misassembly (possible transposable element) 1681129 1682357 92649997 92651225 NC_060945.1 CM039036.1 97.64 True fake: not a misassembly (possible transposable element) 95351511 95352168 92652222 92652879 NC_060927.1 CM039036.1 97.87 True translocation 3488033 3489942 92653017 92654931 NC_060946.1 CM039036.1 96.61 True translocation 1540265 1542556 92654932 92657226 NC_060945.1 CM039036.1 95.78 True translocation 1499183 1499851 92657227 92657895 NC_060939.1 CM039036.1 96.61 True translocation 1684003 1685102 92660229 92661326 NC_060945.1 CM039036.1 97.4 True translocation 2725288 2726908 92661327 92662937 NC_060937.1 CM039036.1 96.19 True relocation, inconsistency = -1295560 1431349 1435686 92662938 92667277 NC_060937.1 CM039036.1 96.53 True relocation, inconsistency = -343329 1093229 1093986 92668149 92668906 NC_060937.1 CM039036.1 96.7 True translocation 94725535 94727940 92669766 92672178 NC_060927.1 CM039036.1 96.56 True relocation, inconsistency = 79649 94807590 94814629 92672179 92679233 NC_060927.1 CM039036.1 96.57 True translocation 142907 144380 92679529 92681005 NC_060937.1 CM039036.1 95.55 True translocation 1362757 1369328 92681006 92687574 NC_060945.1 CM039036.1 95.81 True translocation 92692259 92693585 92687575 92688902 NC_060927.1 CM039036.1 99.04 True local misassembly 92691170 92700644 92688903 92698382 NC_060927.1 CM039036.1 98.77 True relocation, inconsistency = 65050 92765695 92766710 92698383 92699398 NC_060927.1 CM039036.1 99.39 True relocation, inconsistency = 10441 92777436 92783892 92699683 92705986 NC_060927.1 CM039036.1 95.7 True fake: not a misassembly (possible transposable element) 92810901 92812330 92705987 92707416 NC_060927.1 CM039036.1 99.55 True fake: not a misassembly (possible transposable element) 92780105 92790927 92707417 92718486 NC_060927.1 CM039036.1 97.48 True relocation, inconsistency = -56903 92734025 92740840 92718487 92725301 NC_060927.1 CM039036.1 98.89 True relocation, inconsistency = -65974 92674867 92678519 92725302 92728954 NC_060927.1 CM039036.1 99.87 True relocation, inconsistency = 125156 92804145 92808981 92729424 92734343 NC_060927.1 CM039036.1 97.8 True indel: stretch of mismatches 92808982 92817316 92734344 92742683 NC_060927.1 CM039036.1 99.08 True local misassembly 92811479 92817316 92742684 92748516 NC_060927.1 CM039036.1 98.63 True fake: not a misassembly (possible transposable element) 92748203 92751937 92748517 92752257 NC_060927.1 CM039036.1 97.38 True fake: not a misassembly (possible transposable element) 92817312 92818521 92752258 92753467 NC_060927.1 CM039036.1 98.61 True relocation, inconsistency = -56510 92764617 92766040 92756073 92757496 NC_060927.1 CM039036.1 99.37 True local misassembly 92766293 92769360 92757497 92760564 NC_060927.1 CM039036.1 99.61 True local misassembly 92769305 92769804 92761045 92761544 NC_060927.1 CM039036.1 99.57 True relocation, inconsistency = -77028 92692777 92700454 92761545 92769222 NC_060927.1 CM039036.1 99.17 True local misassembly 92701206 92705639 92769223 92773656 NC_060927.1 CM039036.1 99.48 True relocation, inconsistency = 55927 92761567 92770090 92773657 92782175 NC_060927.1 CM039036.1 99.37 True relocation, inconsistency = -76277 92693814 92695277 92782176 92783639 NC_060927.1 CM039036.1 99.59 True relocation, inconsistency = 84827 92780105 92783343 92783640 92786876 NC_060927.1 CM039036.1 98.98 True relocation, inconsistency = -163739 92619605 92621455 92786877 92788726 NC_060927.1 CM039036.1 99.43 True relocation, inconsistency = 191256 92812712 92817316 92788727 92793331 NC_060927.1 CM039036.1 99.17 True local misassembly 92823241 92825302 92793332 92795399 NC_060927.1 CM039036.1 97.58 True relocation, inconsistency = -9669 92815634 92823716 92795400 92803480 NC_060927.1 CM039036.1 98.2 True relocation, inconsistency = 1124522 93948239 93949290 92803481 92804532 NC_060927.1 CM039036.1 98.21 True relocation, inconsistency = 1182388 95132094 95133231 92804948 92806085 NC_060927.1 CM039036.1 96.92 True relocation, inconsistency = -2375701 92757934 92770090 92806489 92818645 NC_060927.1 CM039036.1 99.54 True relocation, inconsistency = -76277 92693814 92700644 92818646 92825476 NC_060927.1 CM039036.1 99.06 True local misassembly 92694370 92700454 92825536 92831620 NC_060927.1 CM039036.1 98.88 True local misassembly 92701206 92703500 92831621 92833915 NC_060927.1 CM039036.1 99.06 True relocation, inconsistency = -72000 92631501 92643754 92833916 92846194 NC_060927.1 CM039036.1 98.53 True local misassembly 92637780 92643924 92846195 92852339 NC_060927.1 CM039036.1 95.72 True relocation, inconsistency = 155476 92799436 92800060 92852375 92852999 NC_060927.1 CM039036.1 99.68 True local misassembly 92800061 92801589 92853377 92854905 NC_060927.1 CM039036.1 99.54 True local misassembly 92802336 92804708 92854906 92857278 NC_060927.1 CM039036.1 99.58 True indel: indel (> 5bp) 92804709 92805492 92857363 92858146 NC_060927.1 CM039036.1 99.25 True fake: not a misassembly (possible transposable element) 92829063 92833072 92858147 92862156 NC_060927.1 CM039036.1 99.59 True fake: not a misassembly (possible transposable element) 92809875 92816018 92862157 92868300 NC_060927.1 CM039036.1 99.79 True translocation 1473526 1475574 92871082 92873132 NC_060939.1 CM039036.1 96.45 True translocation 92747224 92749569 92873787 92876141 NC_060927.1 CM039036.1 97.28 True translocation 395855 396793 92876654 92877599 NC_060937.1 CM039036.1 96.83 True relocation, inconsistency = 727582 1125465 1127676 92878689 92880900 NC_060937.1 CM039036.1 96.08 True translocation 1385942 1388339 92882742 92885137 NC_060945.1 CM039036.1 96.16 True translocation 1363927 1365797 92885138 92887014 NC_060939.1 CM039036.1 96.26 True translocation 94714023 94714851 92887015 92887843 NC_060927.1 CM039036.1 96.47 True indel: indel (> 5bp) 94714877 94717156 92887954 92890233 NC_060927.1 CM039036.1 96.67 True relocation, inconsistency = -343026 94374169 94376159 92890272 92892267 NC_060927.1 CM039036.1 95.84 True translocation 1248035 1249533 92893422 92894925 NC_060939.1 CM039036.1 96.01 True translocation 4768365 4769396 92899109 92900137 NC_060937.1 CM039036.1 96.81 True translocation 1431534 1433534 92900327 92902323 NC_060939.1 CM039036.1 95.75 True translocation 1584442 1586400 92902778 92904739 NC_060945.1 CM039036.1 95.82 True translocation 92636137 92637056 92904740 92905659 NC_060927.1 CM039036.1 96.89 True relocation, inconsistency = 2648134 95285191 95286269 92905660 92906738 NC_060927.1 CM039036.1 96.66 True translocation 4795178 4796423 92907386 92908629 NC_060937.1 CM039036.1 96.55 True translocation 1730554 1734623 92908630 92912695 NC_060945.1 CM039036.1 96.69 True translocation 94970678 94971670 92912696 92913686 NC_060927.1 CM039036.1 96.32 True translocation 1469192 1470767 92914968 92916550 NC_060939.1 CM039036.1 96.97 True translocation 4881590 4887002 92917169 92922582 NC_060937.1 CM039036.1 96.0 True translocation 1291890 1293590 92922583 92924276 NC_060939.1 CM039036.1 96.42 True translocation 1700781 1702288 92925343 92926845 NC_060945.1 CM039036.1 96.42 True translocation 94835133 94836457 92927173 92928492 NC_060927.1 CM039036.1 97.36 True relocation, inconsistency = 446101 95282559 95286820 92928493 92932759 NC_060927.1 CM039036.1 96.07 True relocation, inconsistency = -277215 95009788 95011795 92932942 92934948 NC_060927.1 CM039036.1 97.91 True relocation, inconsistency = -2153032 92859896 92860851 92936081 92937036 NC_060927.1 CM039036.1 97.8 True translocation 1623992 1628216 92943219 92947436 NC_060945.1 CM039036.1 95.35 True translocation 4784952 4785582 92947748 92948378 NC_060937.1 CM039036.1 98.1 True translocation 92745746 92746934 92948482 92949670 NC_060927.1 CM039036.1 96.97 True local misassembly 92743517 92744579 92950003 92951070 NC_060927.1 CM039036.1 96.06 True translocation 1377827 1381723 92951071 92954988 NC_060945.1 CM039036.1 95.81 True translocation 94760527 94761715 92955256 92956444 NC_060927.1 CM039036.1 97.14 True translocation 4784717 4786421 92958047 92959754 NC_060937.1 CM039036.1 96.31 True translocation 3425511 3428044 92963326 92965860 NC_060946.1 CM039036.1 97.87 True translocation 1663155 1664666 92965967 92967478 NC_060945.1 CM039036.1 96.15 True local misassembly 1663155 1666415 92967479 92970741 NC_060945.1 CM039036.1 95.84 True translocation 3426352 3428779 92970969 92973396 NC_060946.1 CM039036.1 96.09 True translocation 94913267 94914814 92973397 92974943 NC_060927.1 CM039036.1 96.53 True local misassembly 94912547 94914960 92974944 92977352 NC_060927.1 CM039036.1 97.27 True relocation, inconsistency = 432077 95347063 95349340 92977378 92979655 NC_060927.1 CM039036.1 96.01 True translocation 941098 944274 92979943 92983122 NC_060937.1 CM039036.1 95.8 True relocation, inconsistency = 1367533 2312196 2314017 92983511 92985336 NC_060937.1 CM039036.1 96.66 True relocation, inconsistency = 1410515 3725588 3727373 92986392 92988177 NC_060937.1 CM039036.1 97.11 True relocation, inconsistency = -3495307 232067 237170 92988178 92993232 NC_060937.1 CM039036.1 95.3 True translocation 1373679 1378818 92993704 92998844 NC_060945.1 CM039036.1 95.99 True relocation, inconsistency = 225269 1604088 1605517 92998845 93000276 NC_060945.1 CM039036.1 96.57 True translocation 1077613 1081511 93000277 93004177 NC_060937.1 CM039036.1 97.05 True relocation, inconsistency = 3281028 4363046 4365352 93004684 93006990 NC_060937.1 CM039036.1 95.23 True translocation 1684094 1685721 93007138 93008764 NC_060945.1 CM039036.1 96.81 True translocation 2990792 2994107 93009069 93012370 NC_060946.1 CM039036.1 95.54 True translocation 1431925 1432877 93012593 93013545 NC_060937.1 CM039036.1 98.85 True local misassembly 1433542 1434276 93014588 93015322 NC_060937.1 CM039036.1 97.55 True translocation 94802937 94808738 93015499 93021310 NC_060927.1 CM039036.1 96.7 True translocation 4823713 4826966 93021311 93024554 NC_060937.1 CM039036.1 96.89 True fake: not a misassembly (possible transposable element) 1407199 1408090 93025598 93026489 NC_060937.1 CM039036.1 98.15 True fake: not a misassembly (possible transposable element) 4822368 4825704 93026490 93029831 NC_060937.1 CM039036.1 97.61 True translocation 3032965 3034945 93029832 93031812 NC_060946.1 CM039036.1 96.03 True translocation 4819715 4821044 93032090 93033419 NC_060937.1 CM039036.1 98.72 True indel: indel (<= 5bp) 4821046 4821782 93033420 93034156 NC_060937.1 CM039036.1 96.33 True translocation 1578779 1581148 93034157 93036516 NC_060945.1 CM039036.1 96.67 True local misassembly 1582050 1584275 93037409 93039627 NC_060945.1 CM039036.1 96.61 True translocation 94811165 94813775 93039628 93042242 NC_060927.1 CM039036.1 96.36 True translocation 4816766 4821837 93042243 93047303 NC_060937.1 CM039036.1 97.34 True relocation, inconsistency = -2514322 2308366 2309021 93048154 93048809 NC_060937.1 CM039036.1 97.71 True indel: indel (<= 5bp) 2309073 2309818 93048865 93049610 NC_060937.1 CM039036.1 96.51 True indel: indel (<= 5bp) 2310140 2311861 93049928 93051649 NC_060937.1 CM039036.1 97.15 True indel: indel (<= 5bp) 2311867 2312558 93051650 93052341 NC_060937.1 CM039036.1 95.52 True translocation 94582623 94589138 93052492 93058986 NC_060927.1 CM039036.1 96.17 True translocation 4960696 4964530 93059166 93063009 NC_060937.1 CM039036.1 96.62 True relocation, inconsistency = -4794233 171057 174138 93063769 93066856 NC_060937.1 CM039036.1 96.73 True translocation 1465737 1466271 93066857 93067391 NC_060939.1 CM039036.1 96.09 True fake: not a misassembly (possible transposable element) 1020228 1021355 93067609 93068736 NC_060937.1 CM039036.1 96.19 True fake: not a misassembly (possible transposable element) 1467413 1469568 93068737 93070897 NC_060939.1 CM039036.1 96.04 True translocation 94024164 94030004 93070898 93076681 NC_060927.1 CM039036.1 95.74 True translocation 1367358 1369058 93076727 93078427 NC_060939.1 CM039036.1 96.83 True indel: indel (> 5bp) 1369136 1370352 93078428 93079644 NC_060939.1 CM039036.1 98.19 True indel: indel (<= 5bp) 1370358 1371103 93079645 93080390 NC_060939.1 CM039036.1 95.98 True indel: indel (> 5bp) 1371571 1372234 93080821 93081484 NC_060939.1 CM039036.1 96.23 True local misassembly 1366999 1369280 93082128 93084409 NC_060939.1 CM039036.1 97.5 True fake: not a misassembly (possible transposable element) 3446453 3447066 93084414 93085027 NC_060946.1 CM039036.1 96.06 True fake: not a misassembly (possible transposable element) 1368439 1370147 93085028 93086694 NC_060939.1 CM039036.1 95.73 True relocation, inconsistency = 117897 1488891 1490332 93087541 93088976 NC_060939.1 CM039036.1 96.23 True translocation 1654689 1657878 93088977 93092166 NC_060945.1 CM039036.1 98.56 True relocation, inconsistency = 102238 1763466 1765736 93095516 93097786 NC_060945.1 CM039036.1 97.71 True translocation 1500509 1501140 93099113 93099743 NC_060939.1 CM039036.1 97.47 True translocation 1118563 1119458 93100801 93101696 NC_060937.1 CM039036.1 98.1 True indel: indel (> 5bp) 1119459 1119987 93101781 93102309 NC_060937.1 CM039036.1 96.79 True translocation 1554725 1555794 93102513 93103582 NC_060945.1 CM039036.1 98.41 True relocation, inconsistency = -24875 1531231 1533014 93103894 93105677 NC_060945.1 CM039036.1 98.26 True translocation 108481 110940 93106212 93108671 NC_060937.1 CM039036.1 97.2 True translocation 1247827 1248884 93109218 93110279 NC_060939.1 CM039036.1 96.52 True translocation 1763466 1765609 93112880 93115023 NC_060945.1 CM039036.1 97.95 True translocation 1500509 1501140 93116477 93117107 NC_060939.1 CM039036.1 97.94 True translocation 1084436 1085442 93118055 93119061 NC_060937.1 CM039036.1 98.31 True relocation, inconsistency = 888471 1974141 1977343 93119289 93122487 NC_060937.1 CM039036.1 95.26 True translocation 1581916 1582651 93123021 93123756 NC_060945.1 CM039036.1 96.6 True translocation 92622095 92622982 93123886 93124773 NC_060927.1 CM039036.1 98.42 True translocation 1974141 1978360 93125001 93129221 NC_060937.1 CM039036.1 95.49 True relocation, inconsistency = -1209058 769303 774767 93129222 93134685 NC_060937.1 CM039036.1 95.89 True relocation, inconsistency = 4100712 4875546 4876069 93134752 93135275 NC_060937.1 CM039036.1 95.99 True indel: indel (<= 5bp) 4876070 4877044 93135279 93136253 NC_060937.1 CM039036.1 96.51 True translocation 95285191 95287493 93136418 93138719 NC_060927.1 CM039036.1 96.83 True translocation 1732061 1737991 93139022 93144951 NC_060945.1 CM039036.1 96.52 True relocation, inconsistency = -55894 1683730 1685512 93146584 93148366 NC_060945.1 CM039036.1 97.08 True translocation 95349981 95352130 93149190 93151339 NC_060927.1 CM039036.1 99.21 True fake: not a misassembly (possible transposable element) 1663150 1664998 93151849 93153696 NC_060945.1 CM039036.1 98.0 True fake: not a misassembly (possible transposable element) 95350714 95351568 93153697 93154551 NC_060927.1 CM039036.1 97.94 True translocation 3214381 3217413 93155225 93158255 NC_060937.1 CM039036.1 95.61 True translocation 3475070 3476046 93161543 93162517 NC_060946.1 CM039036.1 97.03 True translocation 95356008 95356926 93163715 93164633 NC_060927.1 CM039036.1 97.84 True local misassembly 95355421 95357647 93164634 93166859 NC_060927.1 CM039036.1 95.57 True local misassembly 95356022 95357776 93167496 93169248 NC_060927.1 CM039036.1 96.43 True local misassembly 95362435 95478576 93169249 93286076 NC_060927.1 CM039036.1 99.06 True local misassembly 95478993 95504649 93286978 93312679 NC_060927.1 CM039036.1 98.66 True translocation 5102551 5106034 93312680 93316138 NC_060937.1 CM039036.1 96.17 True translocation 7818917 7819579 93320241 93319579 NC_060946.1 CM039036.1 97.89 True translocation 95455582 95456266 93321179 93321863 NC_060927.1 CM039036.1 99.85 True local misassembly 95457036 95458890 93322678 93324532 NC_060927.1 CM039036.1 99.41 True indel: indel (> 5bp) 95458891 95459574 93324548 93325231 NC_060927.1 CM039036.1 99.42 True indel: indel (> 5bp) 95459934 95460914 93325561 93326541 NC_060927.1 CM039036.1 99.69 True indel: indel (> 5bp) 95460930 95461495 93326542 93327107 NC_060927.1 CM039036.1 99.29 True indel: indel (<= 5bp) 95461735 95462780 93327342 93328387 NC_060927.1 CM039036.1 99.62 True indel: stretch of mismatches 95462882 95463460 93328489 93329067 NC_060927.1 CM039036.1 99.65 True indel: indel (> 5bp) 95463594 95465493 93329192 93331091 NC_060927.1 CM039036.1 99.42 True indel: indel (<= 5bp) 95465499 95467973 93331092 93333566 NC_060927.1 CM039036.1 99.8 True indel: indel (> 5bp) 95467974 95469002 93333582 93334610 NC_060927.1 CM039036.1 99.9 True indel: indel (<= 5bp) 95469003 95470157 93334616 93335770 NC_060927.1 CM039036.1 99.83 True indel: indel (> 5bp) 95470178 95471801 93335771 93337394 NC_060927.1 CM039036.1 99.63 True indel: indel (> 5bp) 95471912 95472851 93337524 93338463 NC_060927.1 CM039036.1 99.36 True indel: indel (> 5bp) 95472921 95474747 93338543 93340369 NC_060927.1 CM039036.1 99.67 True local misassembly 95475608 95476421 93341235 93342048 NC_060927.1 CM039036.1 99.39 True translocation 1613245 1927408 93342299 93656508 NC_060939.1 CM039036.1 98.25 True translocation 95826489 95866095 93656509 93697003 NC_060927.1 CM039036.1 97.09 True local misassembly 95871877 95881262 93697004 93706389 NC_060927.1 CM039036.1 99.55 True relocation, inconsistency = 118192 95999455 96005319 93706390 93712248 NC_060927.1 CM039036.1 99.22 True relocation, inconsistency = -55277 95950043 95952409 93712249 93714615 NC_060927.1 CM039036.1 99.68 True relocation, inconsistency = -3737764 92214646 92223850 93714616 93723820 NC_060927.1 CM039036.1 99.51 True local misassembly 92220960 92221737 93723821 93724598 NC_060927.1 CM039036.1 99.44 True relocation, inconsistency = 3734873 95956611 95967075 93724599 93735061 NC_060927.1 CM039036.1 99.44 True local misassembly 95961294 95967395 93735062 93741159 NC_060927.1 CM039036.1 99.42 True relocation, inconsistency = -34699 95933417 95936381 93741880 93744843 NC_060927.1 CM039036.1 99.74 True relocation, inconsistency = -3792695 92143687 92158141 93744844 93759297 NC_060927.1 CM039036.1 99.56 True relocation, inconsistency = 40476 92198618 92225610 93759298 93786311 NC_060927.1 CM039036.1 99.47 True relocation, inconsistency = 3743553 95969164 95970639 93786312 93787787 NC_060927.1 CM039036.1 99.3 True relocation, inconsistency = -3778761 92191879 92202299 93787788 93798205 NC_060927.1 CM039036.1 99.38 True relocation, inconsistency = -37585 92164715 92165496 93798206 93798987 NC_060927.1 CM039036.1 99.36 True relocation, inconsistency = 141659 92307156 92316175 93798988 93808007 NC_060927.1 CM039036.1 99.4 True relocation, inconsistency = 3652916 95969092 95982417 93808008 93821330 NC_060927.1 CM039036.1 99.43 True relocation, inconsistency = -90820 95891598 95903089 93821331 93832822 NC_060927.1 CM039036.1 99.45 True relocation, inconsistency = -3751886 92151204 92155969 93832823 93837588 NC_060927.1 CM039036.1 99.5 True relocation, inconsistency = 406619 92562589 92566291 93837589 93841290 NC_060927.1 CM039036.1 99.41 True relocation, inconsistency = 324993 92895468 92899285 93845474 93849291 NC_060927.1 CM039036.1 99.51 True relocation, inconsistency = -684508 92214778 92223690 93849292 93858204 NC_060927.1 CM039036.1 99.51 True relocation, inconsistency = -98636 92125142 92135865 93858292 93869015 NC_060927.1 CM039036.1 99.52 True relocation, inconsistency = 119723 92255589 92260899 93869016 93874326 NC_060927.1 CM039036.1 99.3 True relocation, inconsistency = 3697292 95958192 95968972 93874327 93885100 NC_060927.1 CM039036.1 99.38 True relocation, inconsistency = -3926349 92042624 92050190 93885101 93892667 NC_060927.1 CM039036.1 99.5 True relocation, inconsistency = 4065458 96115649 96117922 93892668 93894941 NC_060927.1 CM039036.1 99.64 True relocation, inconsistency = -108154 96011773 96013846 93896946 93899019 NC_060927.1 CM039036.1 99.28 True relocation, inconsistency = -3806644 92207284 92220959 93899101 93912776 NC_060927.1 CM039036.1 99.5 True local misassembly 92215178 92218854 93912777 93916453 NC_060927.1 CM039036.1 99.51 True indel: stretch of mismatches 92218855 92251444 93916454 93949045 NC_060927.1 CM039036.1 99.58 True relocation, inconsistency = 3708855 95960300 95968074 93949046 93956812 NC_060927.1 CM039036.1 99.52 True relocation, inconsistency = -77383 95890692 95902510 93956813 93968631 NC_060927.1 CM039036.1 99.43 True relocation, inconsistency = -3469585 92432926 92434685 93968632 93970391 NC_060927.1 CM039036.1 99.5 True relocation, inconsistency = 3778580 96213266 96222336 93970392 93979457 NC_060927.1 CM039036.1 99.31 True relocation, inconsistency = 55241 96277578 96278206 93979458 93980085 NC_060927.1 CM039036.1 97.94 True indel: indel (<= 5bp) 96278303 96281062 93980184 93982942 NC_060927.1 CM039036.1 97.86 True local misassembly 96275446 96278206 93983108 93985867 NC_060927.1 CM039036.1 98.04 True local misassembly 96275446 96278206 93985999 93988758 NC_060927.1 CM039036.1 97.86 True indel: indel (<= 5bp) 96278303 96281062 93988857 93991615 NC_060927.1 CM039036.1 97.86 True local misassembly 96275446 96278206 93991781 93994540 NC_060927.1 CM039036.1 98.04 True indel: indel (<= 5bp) 96278303 96281062 93994639 93997397 NC_060927.1 CM039036.1 97.86 True relocation, inconsistency = -69702 96211551 96218059 93997588 94004090 NC_060927.1 CM039036.1 99.06 True relocation, inconsistency = -193692 96024368 96038386 94004091 94017767 NC_060927.1 CM039036.1 96.95 True local misassembly 96044169 96047978 94017768 94021577 NC_060927.1 CM039036.1 99.64 True local misassembly 96042197 96050386 94021578 94029767 NC_060927.1 CM039036.1 99.71 True relocation, inconsistency = -11564 96038823 96066964 94029768 94057921 NC_060927.1 CM039036.1 99.51 True local misassembly 96072747 96079312 94057922 94064493 NC_060927.1 CM039036.1 99.49 True local misassembly 96082204 96088877 94064494 94071167 NC_060927.1 CM039036.1 99.31 True relocation, inconsistency = -46258 96042620 96058367 94071168 94086913 NC_060927.1 CM039036.1 99.39 True relocation, inconsistency = 24146 96082516 96099537 94086916 94103935 NC_060927.1 CM039036.1 99.33 True relocation, inconsistency = -17348 96082190 96114115 94103936 94135856 NC_060927.1 CM039036.1 99.3 True relocation, inconsistency = -17344 96096772 96114132 94135857 94153220 NC_060927.1 CM039036.1 99.34 True local misassembly 96111244 96122817 94153221 94164791 NC_060927.1 CM039036.1 99.58 True relocation, inconsistency = -92512 96030306 96035931 94164792 94170417 NC_060927.1 CM039036.1 99.53 True local misassembly 96038823 96048067 94170418 94179661 NC_060927.1 CM039036.1 99.34 True local misassembly 96050959 96061171 94179662 94189873 NC_060927.1 CM039036.1 99.16 True relocation, inconsistency = 199792 96260964 96298092 94189874 94226997 NC_060927.1 CM039036.1 98.58 True relocation, inconsistency = -44537 96254109 96269195 94227551 94242295 NC_060927.1 CM039036.1 96.28 True relocation, inconsistency = -15640 96254109 96257550 94242849 94246291 NC_060927.1 CM039036.1 98.68 True relocation, inconsistency = 24477 96282028 96348792 94246292 94313056 NC_060927.1 CM039036.1 99.39 True relocation, inconsistency = -9347 96339510 96386727 94313121 94360338 NC_060927.1 CM039036.1 99.21 True fake: scaffold gap size wrong estimation (local) 96387422 96414943 94360539 94388058 NC_060927.1 CM039036.1 99.66 True local misassembly 96414942 98449202 94392735 96426784 NC_060927.1 CM039036.1 99.69 True local misassembly 98449440 98484725 96429133 96464377 NC_060927.1 CM039036.1 99.74 True local misassembly 98485156 104757444 96464910 102724168 NC_060927.1 CM039036.1 99.55 True local misassembly 104758430 105089959 102724169 103055715 NC_060927.1 CM039036.1 99.86 True local misassembly 105090593 105523791 103056098 103489242 NC_060927.1 CM039036.1 99.84 True local misassembly 105524044 106809865 103489375 104773614 NC_060927.1 CM039036.1 99.64 True indel: indel (> 5bp) 106810019 107770041 104773707 105734410 NC_060927.1 CM039036.1 99.72 True indel: indel (> 5bp) 107770134 114885690 105734462 112850022 NC_060927.1 CM039036.1 99.83 True translocation 99195648 99197279 112851653 112850023 NC_060933.1 CM039036.1 96.68 True translocation 114885491 115745232 112859323 113719143 NC_060927.1 CM039036.1 99.8 True relocation, inconsistency = 8199 115753432 126835999 113719144 124795748 NC_060927.1 CM039036.1 99.77 True local misassembly 126836253 131286048 124796370 129239299 NC_060927.1 CM039036.1 99.5 True local misassembly 131286145 132084673 129239602 130037282 NC_060927.1 CM039036.1 99.81 True indel: indel (<= 5bp) 132084782 132682722 130037388 130635687 NC_060927.1 CM039036.1 99.81 True local misassembly 132682795 132788383 130636302 130741836 NC_060927.1 CM039036.1 99.62 True relocation, inconsistency = 43385 132831769 133380628 130741837 131285063 NC_060927.1 CM039036.1 98.79 True indel: indel (> 5bp) 133380693 134536359 131285172 132441028 NC_060927.1 CM039036.1 99.87 True indel: indel (> 5bp) 134536490 134721859 132441221 132626602 NC_060927.1 CM039036.1 99.98 True local misassembly 134722924 136170659 132627567 134076218 NC_060927.1 CM039036.1 99.75 True indel: indel (> 5bp) 136171007 146196201 134076497 144103429 NC_060927.1 CM039036.1 99.68 True local misassembly 146196297 148018707 144104520 145925338 NC_060927.1 CM039036.1 99.7 True relocation, inconsistency = 8588 148027307 149422702 145925350 147320507 NC_060927.1 CM039036.1 99.67 True local misassembly 149427911 150644096 147320819 148537094 NC_060927.1 CM039036.1 99.91 True local misassembly 150644676 150645287 148537095 148537706 NC_060927.1 CM039036.1 99.51 True fake: not a misassembly (possible transposable element) 123813139 123813974 148539434 148540269 NC_060933.1 CM039036.1 98.92 True fake: not a misassembly (possible transposable element) 150645300 151131957 148540330 149027014 NC_060927.1 CM039036.1 99.76 True indel: indel (> 5bp) 151132082 151512436 149027060 149407357 NC_060927.1 CM039036.1 99.85 True indel: indel (<= 5bp) 151512633 163719247 149407559 161626424 NC_060927.1 CM039036.1 99.71 True local misassembly 163719365 166794152 161626686 164690781 NC_060927.1 CM039036.1 99.34 True local misassembly 166794271 167875966 164691407 165772645 NC_060927.1 CM039036.1 99.75 True indel: indel (> 5bp) 167876038 179571682 165772701 177468349 NC_060927.1 CM039036.1 99.79 True local misassembly 179572067 184276415 177468350 182174531 NC_060927.1 CM039036.1 99.78 True local misassembly 184279622 187359365 182174532 185255737 NC_060927.1 CM039036.1 99.58 True local misassembly 187359485 187568415 185255985 185464119 NC_060927.1 CM039036.1 99.52 True local misassembly 187570463 192257116 185465770 190147634 NC_060927.1 CM039036.1 99.62 True indel: indel (> 5bp) 192257269 194314956 190147745 192214497 NC_060927.1 CM039036.1 99.19 True relocation, inconsistency = 22382027 169828968 169830398 192260771 192259341 NC_060927.1 CM039036.1 96.23 True relocation, inconsistency = 24418052 194314955 196972481 192327276 194983590 NC_060927.1 CM039036.1 99.8 True local misassembly 196973264 197376363 194984054 195387032 NC_060927.1 CM039036.1 99.59 True local misassembly 197376163 197688396 195388440 195700574 NC_060927.1 CM039036.1 99.71 True indel: indel (> 5bp) 197688491 197807288 195700732 195819596 NC_060927.1 CM039036.1 99.1 True local misassembly 197808498 198399541 195820287 196399125 NC_060927.1 CM039036.1 97.37 True relocation, inconsistency = 277016 198676558 198677871 196400439 196399126 NC_060927.1 CM039036.1 98.96 True indel: indel (> 5bp) 198674644 198676557 196402389 196400476 NC_060927.1 CM039036.1 99.63 True local misassembly 198673244 198674005 196403784 196403023 NC_060927.1 CM039036.1 99.21 True local misassembly 198671576 198672863 196405308 196404021 NC_060927.1 CM039036.1 98.99 True indel: indel (<= 5bp) 198670784 198671575 196406101 196405310 NC_060927.1 CM039036.1 98.86 True indel: indel (<= 5bp) 198668670 198670783 196408216 196406103 NC_060927.1 CM039036.1 99.91 True local misassembly 198666913 198667612 196409644 196408945 NC_060927.1 CM039036.1 100.0 True indel: indel (<= 5bp) 198665510 198666912 196411048 196409646 NC_060927.1 CM039036.1 100.0 True indel: indel (> 5bp) 198663617 198665509 196412950 196411058 NC_060927.1 CM039036.1 99.95 True indel: indel (<= 5bp) 198660833 198663614 196415732 196412951 NC_060927.1 CM039036.1 99.96 True indel: stretch of mismatches 198657244 198660687 196419321 196415878 NC_060927.1 CM039036.1 99.74 True local misassembly 198655309 198656732 196423236 196421813 NC_060927.1 CM039036.1 99.02 True local misassembly 198650756 198652014 196425842 196424584 NC_060927.1 CM039036.1 99.76 True indel: indel (> 5bp) 198647403 198650738 196429178 196425843 NC_060927.1 CM039036.1 99.94 True indel: indel (<= 5bp) 198646021 198647400 196430558 196429179 NC_060927.1 CM039036.1 99.78 True relocation, inconsistency = 294555 198321811 198350965 196431059 196460274 NC_060927.1 CM039036.1 98.53 True local misassembly 198355371 198383748 196461141 196489655 NC_060927.1 CM039036.1 96.99 True relocation, inconsistency = 306915 198691125 198692947 196491939 196490117 NC_060927.1 CM039036.1 99.45 True local misassembly 198689397 198690507 196493667 196492557 NC_060927.1 CM039036.1 98.74 True indel: indel (> 5bp) 198688477 198689300 196494580 196493757 NC_060927.1 CM039036.1 98.54 True indel: stretch of mismatches 198685676 198688357 196497381 196494700 NC_060927.1 CM039036.1 99.22 True indel: indel (<= 5bp) 198682495 198685674 196500561 196497382 NC_060927.1 CM039036.1 99.25 True local misassembly 198681899 198682494 196501452 196500857 NC_060927.1 CM039036.1 99.16 True indel: indel (<= 5bp) 198681184 198681825 196502171 196501530 NC_060927.1 CM039036.1 96.57 True local misassembly 198679873 198680399 196503853 196503327 NC_060927.1 CM039036.1 99.24 True indel: indel (<= 5bp) 198679128 198679871 196504597 196503854 NC_060927.1 CM039036.1 98.79 True indel: indel (<= 5bp) 198676945 198678681 196506781 196505045 NC_060927.1 CM039036.1 99.14 True indel: indel (<= 5bp) 198674626 198676943 196509099 196506782 NC_060927.1 CM039036.1 99.78 True indel: indel (<= 5bp) 198672864 198674625 196510862 196509101 NC_060927.1 CM039036.1 99.94 True indel: indel (<= 5bp) 198669800 198672863 196513929 196510866 NC_060927.1 CM039036.1 99.64 True indel: indel (> 5bp) 198668671 198669767 196515026 196513930 NC_060927.1 CM039036.1 99.64 True indel: indel (> 5bp) 198667599 198668629 196516057 196515027 NC_060927.1 CM039036.1 100.0 True indel: indel (> 5bp) 198666919 198667515 196516802 196516206 NC_060927.1 CM039036.1 98.99 True indel: indel (> 5bp) 198666198 198666783 196517516 196516931 NC_060927.1 CM039036.1 99.66 True local misassembly 198664729 198665518 196518986 196518197 NC_060927.1 CM039036.1 99.37 True indel: indel (<= 5bp) 198664043 198664727 196519671 196518987 NC_060927.1 CM039036.1 98.98 True indel: indel (> 5bp) 198661903 198663614 196521804 196520093 NC_060927.1 CM039036.1 99.42 True indel: indel (<= 5bp) 198660833 198661785 196522869 196521917 NC_060927.1 CM039036.1 99.79 True indel: indel (<= 5bp) 198659748 198660832 196523955 196522871 NC_060927.1 CM039036.1 99.82 True indel: indel (<= 5bp) 198657244 198659747 196526463 196523960 NC_060927.1 CM039036.1 99.56 True local misassembly 198655246 198656732 196530351 196528865 NC_060927.1 CM039036.1 99.06 True local misassembly 198598201 198652022 196586455 196533434 NC_060927.1 CM039036.1 97.31 True indel: indel (> 5bp) 198594208 198597821 196590511 196586898 NC_060927.1 CM039036.1 99.61 True local misassembly 198593071 198593778 196592800 196592093 NC_060927.1 CM039036.1 99.86 True local misassembly 198590397 198591609 196595407 196594195 NC_060927.1 CM039036.1 99.92 True indel: indel (<= 5bp) 198589860 198590395 196595943 196595408 NC_060927.1 CM039036.1 99.44 True local misassembly 198585666 198587382 196598457 196596741 NC_060927.1 CM039036.1 99.65 True local misassembly 198578831 198579349 196601593 196601075 NC_060927.1 CM039036.1 96.34 True local misassembly 198576953 198578488 196603375 196601840 NC_060927.1 CM039036.1 98.96 True local misassembly 198399622 198570018 196774526 196604454 NC_060927.1 CM039036.1 99.02 True indel: indel (> 5bp) 198383738 198399541 196790435 196774601 NC_060927.1 CM039036.1 98.81 True relocation, inconsistency = 293878 198693420 199530674 196790436 197628064 NC_060927.1 CM039036.1 99.57 True local misassembly 199536769 199674937 197630608 197768258 NC_060927.1 CM039036.1 99.36 True local misassembly 199675191 200192231 197768319 198280948 NC_060927.1 CM039036.1 98.76 True indel: indel (> 5bp) 200192328 200832778 198281000 198923354 NC_060927.1 CM039036.1 99.29 True local misassembly 200835487 200837881 198929213 198931607 NC_060927.1 CM039036.1 99.71 True indel: indel (<= 5bp) 200837886 200841055 198931608 198934777 NC_060927.1 CM039036.1 99.91 True indel: indel (<= 5bp) 200841056 200841711 198934779 198935434 NC_060927.1 CM039036.1 100.0 True indel: indel (<= 5bp) 200841998 200845609 198935718 198939329 NC_060927.1 CM039036.1 99.92 True indel: indel (<= 5bp) 200845610 200846349 198939331 198940070 NC_060927.1 CM039036.1 100.0 True indel: indel (<= 5bp) 200846351 200869365 198940071 198963085 NC_060927.1 CM039036.1 99.87 True indel: indel (> 5bp) 200869297 201088876 198963090 199182914 NC_060927.1 CM039036.1 99.52 True translocation 11464 14777 199186228 199182915 NC_060933.1 CM039036.1 99.28 True CONTIG CM039036.1 199186228 misassembled 92872556 92901109 28552 1 NC_060927.1 JAKCWS010000032.1 99.72 True relocation, inconsistency = 353740 92517074 92518815 30294 28553 NC_060927.1 JAKCWS010000032.1 98.14 True relocation, inconsistency = 86388 92379430 92430685 80889 30295 NC_060927.1 JAKCWS010000032.1 98.21 True relocation, inconsistency = -520740 92882838 92900169 97539 80890 NC_060927.1 JAKCWS010000032.1 96.27 True relocation, inconsistency = 287047 92562428 92595790 130546 97540 NC_060927.1 JAKCWS010000032.1 98.53 True relocation, inconsistency = -311722 92871790 92874149 132903 130547 NC_060927.1 JAKCWS010000032.1 97.02 True relocation, inconsistency = 460027 92405981 92411762 138681 132904 NC_060927.1 JAKCWS010000032.1 99.48 True relocation, inconsistency = 69384 92320037 92336596 155229 138682 NC_060927.1 JAKCWS010000032.1 99.46 True relocation, inconsistency = -3900006 96214265 96220042 160999 155230 NC_060927.1 JAKCWS010000032.1 99.25 True local misassembly 96216364 96220050 164682 161000 NC_060927.1 JAKCWS010000032.1 99.27 True relocation, inconsistency = 3689303 92510501 92527060 181234 164683 NC_060927.1 JAKCWS010000032.1 99.54 True relocation, inconsistency = 308992 92195707 92201508 187034 181235 NC_060927.1 JAKCWS010000032.1 99.42 True local misassembly 92172584 92192049 206586 187463 NC_060927.1 JAKCWS010000032.1 97.81 True relocation, inconsistency = -357799 92518829 92529951 218134 207018 NC_060927.1 JAKCWS010000032.1 99.47 True relocation, inconsistency = -47463 92552049 92566291 232369 218135 NC_060927.1 JAKCWS010000032.1 99.42 True relocation, inconsistency = -33686 92580064 92585734 238038 232370 NC_060927.1 JAKCWS010000032.1 99.53 True relocation, inconsistency = -8676 92580064 92588414 246711 238364 NC_060927.1 JAKCWS010000032.1 99.58 True local misassembly 92582190 92582954 247476 246712 NC_060927.1 JAKCWS010000032.1 99.53 True relocation, inconsistency = -306948 92883184 92889137 253429 247477 NC_060927.1 JAKCWS010000032.1 99.63 True relocation, inconsistency = 289938 92588415 92593245 258260 253430 NC_060927.1 JAKCWS010000032.1 99.59 True relocation, inconsistency = 343888 92215957 92244526 286486 258261 NC_060927.1 JAKCWS010000032.1 98.33 True relocation, inconsistency = -350673 92551865 92566291 301240 286825 NC_060927.1 JAKCWS010000032.1 99.33 True relocation, inconsistency = -36581 92580064 92588414 309619 301272 NC_060927.1 JAKCWS010000032.1 99.58 True local misassembly 92582190 92582954 310384 309620 NC_060927.1 JAKCWS010000032.1 99.52 True relocation, inconsistency = -306948 92880936 92889137 318585 310385 NC_060927.1 JAKCWS010000032.1 99.62 True relocation, inconsistency = 298276 92579636 92582659 321609 318586 NC_060927.1 JAKCWS010000032.1 99.55 True relocation, inconsistency = 49684 92497619 92529951 353604 321610 NC_060927.1 JAKCWS010000032.1 98.48 True relocation, inconsistency = 259847 92215957 92237771 374737 353605 NC_060927.1 JAKCWS010000032.1 97.39 True relocation, inconsistency = -350673 92551865 92566291 389491 375076 NC_060927.1 JAKCWS010000032.1 99.33 True relocation, inconsistency = -33687 92576213 92585551 398827 389492 NC_060927.1 JAKCWS010000032.1 99.51 True relocation, inconsistency = 46790 92524170 92528937 404080 399313 NC_060927.1 JAKCWS010000032.1 99.51 True local misassembly 92497619 92529951 436073 404081 NC_060927.1 JAKCWS010000032.1 98.48 True relocation, inconsistency = -70253 92561669 92567871 442278 436074 NC_060927.1 JAKCWS010000032.1 99.65 True relocation, inconsistency = 21442 92517726 92540226 464782 442279 NC_060927.1 JAKCWS010000032.1 99.68 True relocation, inconsistency = -372964 92869812 92890689 485324 464783 NC_060927.1 JAKCWS010000032.1 97.98 True relocation, inconsistency = 330612 92514966 92539199 509221 485325 NC_060927.1 JAKCWS010000032.1 98.29 True relocation, inconsistency = -23129 92526825 92538094 520492 509222 NC_060927.1 JAKCWS010000032.1 99.63 True relocation, inconsistency = -370750 92874445 92897574 543625 520493 NC_060927.1 JAKCWS010000032.1 99.53 True relocation, inconsistency = -23130 92889137 92897574 552065 543626 NC_060927.1 JAKCWS010000032.1 99.56 True relocation, inconsistency = 523630 92277538 92365506 638685 552066 NC_060927.1 JAKCWS010000032.1 97.92 True CONTIG JAKCWS010000032.1 638685 misassembled 92103236 92107174 3 3941 NC_060927.1 JAKCWS010000033.1 99.88 True local misassembly 92102070 92108790 3942 10662 NC_060927.1 JAKCWS010000033.1 96.47 True local misassembly 92110666 92139877 10663 39876 NC_060927.1 JAKCWS010000033.1 99.8 True relocation, inconsistency = -11564 92128314 92141013 39877 52576 NC_060927.1 JAKCWS010000033.1 99.62 True relocation, inconsistency = 198284 92339298 92425367 52577 138646 NC_060927.1 JAKCWS010000033.1 99.55 True relocation, inconsistency = -191822 92233546 92312155 138647 217257 NC_060927.1 JAKCWS010000033.1 99.77 True relocation, inconsistency = 176009 92488165 92501505 217258 230595 NC_060927.1 JAKCWS010000033.1 99.6 True relocation, inconsistency = -68704 92432802 92458587 230596 256378 NC_060927.1 JAKCWS010000033.1 99.68 True local misassembly 92464370 92529951 256379 321957 NC_060927.1 JAKCWS010000033.1 99.68 True local misassembly 92532843 92541196 321958 330309 NC_060927.1 JAKCWS010000033.1 99.36 True relocation, inconsistency = -34017 92507180 92529172 330310 352302 NC_060927.1 JAKCWS010000033.1 99.63 True relocation, inconsistency = -31801 92497619 92526281 352550 381212 NC_060927.1 JAKCWS010000033.1 99.61 True relocation, inconsistency = 344729 92871011 92891495 381213 401362 NC_060927.1 JAKCWS010000033.1 98.31 True relocation, inconsistency = -388095 92503401 92528937 401363 426895 NC_060927.1 JAKCWS010000033.1 99.52 True relocation, inconsistency = 46790 92576213 92585550 427381 436715 NC_060927.1 JAKCWS010000033.1 99.5 True relocation, inconsistency = -69583 92515968 92529946 436716 450686 NC_060927.1 JAKCWS010000033.1 99.5 True CONTIG JAKCWS010000033.1 450686 misassembled 92897323 92900913 3586 1 NC_060927.1 JAKCWS010000034.1 99.65 True local misassembly 92869516 92903104 37175 3587 NC_060927.1 JAKCWS010000034.1 99.69 True relocation, inconsistency = 347620 92507590 92521895 51145 37176 NC_060927.1 JAKCWS010000034.1 98.12 True relocation, inconsistency = 303548 92189936 92204032 64915 51155 NC_060927.1 JAKCWS010000034.1 97.16 True local misassembly 92164715 92195379 95587 64916 NC_060927.1 JAKCWS010000034.1 99.44 True relocation, inconsistency = -430280 92562428 92594994 127800 95588 NC_060927.1 JAKCWS010000034.1 98.52 True relocation, inconsistency = -323288 92874681 92885715 138824 127801 NC_060927.1 JAKCWS010000034.1 98.01 True relocation, inconsistency = 575666 92282455 92299014 155372 138825 NC_060927.1 JAKCWS010000034.1 99.47 True relocation, inconsistency = -3937588 96214265 96220042 161142 155373 NC_060927.1 JAKCWS010000034.1 99.25 True local misassembly 96216364 96220050 164825 161143 NC_060927.1 JAKCWS010000034.1 99.28 True relocation, inconsistency = 3324336 92880936 92892027 175912 164826 NC_060927.1 JAKCWS010000034.1 99.6 True relocation, inconsistency = 442683 92430619 92438252 183542 175913 NC_060927.1 JAKCWS010000034.1 99.58 True relocation, inconsistency = -153080 92577524 92583698 189712 183543 NC_060927.1 JAKCWS010000034.1 99.55 True relocation, inconsistency = 502027 92072161 92075493 193046 189716 NC_060927.1 JAKCWS010000034.1 99.45 True relocation, inconsistency = -822758 92869678 92894918 217607 193047 NC_060927.1 JAKCWS010000034.1 96.91 True relocation, inconsistency = 344729 92521278 92524948 221276 217608 NC_060927.1 JAKCWS010000034.1 99.44 True local misassembly 92516276 92527059 232054 221277 NC_060927.1 JAKCWS010000034.1 99.46 True relocation, inconsistency = 314774 92195382 92201501 238172 232055 NC_060927.1 JAKCWS010000034.1 99.48 True relocation, inconsistency = -370910 92552049 92566291 252407 238173 NC_060927.1 JAKCWS010000034.1 99.38 True relocation, inconsistency = -33686 92580064 92585734 258076 252408 NC_060927.1 JAKCWS010000034.1 99.53 True relocation, inconsistency = -8676 92580064 92588414 266749 258402 NC_060927.1 JAKCWS010000034.1 99.58 True local misassembly 92582190 92582954 267514 266750 NC_060927.1 JAKCWS010000034.1 99.53 True relocation, inconsistency = -306948 92883184 92889137 273467 267515 NC_060927.1 JAKCWS010000034.1 99.62 True relocation, inconsistency = 289938 92588415 92593245 278298 273468 NC_060927.1 JAKCWS010000034.1 99.59 True relocation, inconsistency = 343888 92215957 92244526 306524 278299 NC_060927.1 JAKCWS010000034.1 98.33 True relocation, inconsistency = -303210 92515968 92519166 309721 306525 NC_060927.1 JAKCWS010000034.1 99.46 True CONTIG JAKCWS010000034.1 309862 misassembled 91992454 92014021 21563 1 NC_060927.1 JAKCWS010000035.1 99.62 True relocation, inconsistency = 50701 91889265 91941752 74043 21564 NC_060927.1 JAKCWS010000035.1 99.49 True relocation, inconsistency = -223634 92104889 92112898 82391 74044 NC_060927.1 JAKCWS010000035.1 96.47 True local misassembly 92100712 92109993 91673 82392 NC_060927.1 JAKCWS010000035.1 99.9 True relocation, inconsistency = -20756 92098364 92121467 114769 91674 NC_060927.1 JAKCWS010000035.1 96.72 True relocation, inconsistency = 11220 92080461 92087143 121452 114770 NC_060927.1 JAKCWS010000035.1 99.62 True relocation, inconsistency = 39097 92025521 92041363 137296 121453 NC_060927.1 JAKCWS010000035.1 99.57 True relocation, inconsistency = -67984 92076630 92093323 154169 137478 NC_060927.1 JAKCWS010000035.1 99.49 True relocation, inconsistency = 39101 92016909 92037528 174789 154170 NC_060927.1 JAKCWS010000035.1 99.77 True CONTIG JAKCWS010000035.1 174789 misassembled 91846865 91953808 1 107296 NC_060927.1 JAKCWS010000036.1 99.26 True CONTIG JAKCWS010000036.1 107296 correct 3238 12170 5451 14494 NC_060928.1 CM039037.1 98.12 True local misassembly 18447 1053831 14495 1050930 NC_060928.1 CM039037.1 99.5 True local misassembly 1054127 1192521 1051750 1190214 NC_060928.1 CM039037.1 99.79 True indel: indel (> 5bp) 1192680 1424526 1190300 1427374 NC_060928.1 CM039037.1 96.65 True local misassembly 1427402 3572586 1428050 3574867 NC_060928.1 CM039037.1 99.49 True local misassembly 3572669 4067801 3575218 4071883 NC_060928.1 CM039037.1 99.29 True local misassembly 4068752 4120987 4072590 4124813 NC_060928.1 CM039037.1 99.24 True translocation 67972925 67975388 4124814 4127277 NC_060935.1 CM039037.1 95.3 True local misassembly 67976366 67980317 4128567 4132517 NC_060935.1 CM039037.1 95.33 True translocation 9506960 9507463 4134309 4133806 NC_060928.1 CM039037.1 96.23 True indel: indel (> 5bp) 9506329 9506903 4134884 4134310 NC_060928.1 CM039037.1 96.0 True indel: indel (<= 5bp) 9503906 9506286 4137305 4134925 NC_060928.1 CM039037.1 95.84 True indel: indel (<= 5bp) 9502811 9503905 4138402 4137308 NC_060928.1 CM039037.1 96.07 True indel: stretch of mismatches 9501865 9502366 4139348 4138847 NC_060928.1 CM039037.1 96.22 True relocation, inconsistency = 563591 8933224 8938125 4144468 4139497 NC_060928.1 CM039037.1 95.21 True fake: not a misassembly (possible transposable element) 67993014 67994606 4144741 4146333 NC_060935.1 CM039037.1 97.3 True fake: not a misassembly (possible transposable element) 8930362 8930954 4147330 4146738 NC_060928.1 CM039037.1 96.29 True indel: indel (<= 5bp) 8929707 8930360 4147984 4147331 NC_060928.1 CM039037.1 98.17 True indel: indel (> 5bp) 8928567 8929307 4149102 4148362 NC_060928.1 CM039037.1 97.3 True indel: stretch of mismatches 8927127 8928081 4150542 4149588 NC_060928.1 CM039037.1 97.7 True relocation, inconsistency = 2437593 4119889 6486174 4153902 6520040 NC_060928.1 CM039037.1 99.58 True local misassembly 6487488 6555485 6520499 6588466 NC_060928.1 CM039037.1 99.53 True indel: indel (> 5bp) 6555580 7836130 6588511 7872697 NC_060928.1 CM039037.1 99.26 True local misassembly 7840799 8617103 7872698 8647884 NC_060928.1 CM039037.1 99.48 True local misassembly 8622750 9144963 8647885 9170215 NC_060928.1 CM039037.1 99.89 True fake: scaffold gap size wrong estimation (local) 9138539 9241967 9170716 9274164 NC_060928.1 CM039037.1 99.49 True relocation, inconsistency = -118732 9123236 9476387 9274165 9627093 NC_060928.1 CM039037.1 99.55 True translocation 71817385 71817953 9627735 9628303 NC_060935.1 CM039037.1 96.31 True indel: indel (> 5bp) 71818356 71819588 9628635 9629867 NC_060935.1 CM039037.1 95.54 True local misassembly 71820192 71821341 9630476 9631625 NC_060935.1 CM039037.1 95.65 True translocation 9482310 9483127 9632943 9633760 NC_060928.1 CM039037.1 95.6 True local misassembly 9485169 9485859 9635806 9636495 NC_060928.1 CM039037.1 96.27 True translocation 71826186 71831748 9636496 9642084 NC_060935.1 CM039037.1 95.71 True indel: indel (<= 5bp) 71831831 71832744 9642168 9643081 NC_060935.1 CM039037.1 95.96 True translocation 9472713 9473625 9647916 9648827 NC_060928.1 CM039037.1 95.84 True local misassembly 9476024 10134111 9651229 10306439 NC_060928.1 CM039037.1 98.74 True local misassembly 10134374 10513592 10306821 10686060 NC_060928.1 CM039037.1 99.76 True indel: indel (<= 5bp) 10513701 11541584 10686167 11721008 NC_060928.1 CM039037.1 99.11 True indel: indel (> 5bp) 11541795 12627152 11721210 12804206 NC_060928.1 CM039037.1 99.6 True local misassembly 12627533 12644733 12805665 12822816 NC_060928.1 CM039037.1 99.15 True local misassembly 12646570 12692997 12825421 12871841 NC_060928.1 CM039037.1 99.72 True local misassembly 12694612 14903465 12873392 15083125 NC_060928.1 CM039037.1 99.79 True indel: indel (> 5bp) 14903637 14904500 15083305 15084168 NC_060928.1 CM039037.1 97.92 True local misassembly 14905102 16721284 15084785 16901670 NC_060928.1 CM039037.1 99.77 True local misassembly 16721539 19208732 16901818 19382943 NC_060928.1 CM039037.1 99.5 True local misassembly 19209453 19502521 19383443 19677048 NC_060928.1 CM039037.1 99.6 True local misassembly 19503116 20066990 19677903 20241651 NC_060928.1 CM039037.1 99.81 True local misassembly 20067868 20454054 20242483 20629715 NC_060928.1 CM039037.1 99.6 True local misassembly 20454268 21174520 20630031 21344127 NC_060928.1 CM039037.1 98.88 True indel: indel (<= 5bp) 21174568 23599019 21344172 23768417 NC_060928.1 CM039037.1 99.81 True indel: stretch of mismatches 23599020 23634711 23768418 23804064 NC_060928.1 CM039037.1 99.36 True indel: indel (> 5bp) 23634786 26199555 23804163 26366147 NC_060928.1 CM039037.1 99.72 True indel: indel (> 5bp) 26199768 26432834 26366353 26599102 NC_060928.1 CM039037.1 99.71 True indel: indel (<= 5bp) 26432908 30264457 26599174 30429640 NC_060928.1 CM039037.1 99.8 True local misassembly 30264576 30957269 30429867 31120044 NC_060928.1 CM039037.1 99.43 True indel: indel (> 5bp) 30957300 31058839 31120054 31221632 NC_060928.1 CM039037.1 99.78 True indel: indel (> 5bp) 31058862 34747182 31221677 34910694 NC_060928.1 CM039037.1 99.83 True relocation, inconsistency = 49101 34796284 40002714 34910695 40118363 NC_060928.1 CM039037.1 99.6 True local misassembly 40003061 42740946 40118614 42863101 NC_060928.1 CM039037.1 99.53 True indel: indel (> 5bp) 42740970 44994041 42863157 45114889 NC_060928.1 CM039037.1 99.65 True indel: indel (> 5bp) 44994119 44994753 45114947 45115597 NC_060928.1 CM039037.1 95.73 True indel: indel (> 5bp) 44994726 49061889 45115598 49181598 NC_060928.1 CM039037.1 99.65 True local misassembly 49065268 49066013 49184189 49184934 NC_060928.1 CM039037.1 99.87 True local misassembly 49066534 49067237 49185465 49186168 NC_060928.1 CM039037.1 99.72 True local misassembly 49068040 49068903 49188882 49189745 NC_060928.1 CM039037.1 99.77 True local misassembly 49069498 49070103 49190340 49190945 NC_060928.1 CM039037.1 99.67 True local misassembly 49075434 49076162 49197225 49197953 NC_060928.1 CM039037.1 99.59 True local misassembly 49077499 49078092 49199375 49199968 NC_060928.1 CM039037.1 99.16 True indel: indel (<= 5bp) 49078093 49079299 49199974 49201180 NC_060928.1 CM039037.1 99.75 True indel: indel (> 5bp) 49079404 49079911 49201295 49201802 NC_060928.1 CM039037.1 99.61 True local misassembly 49080411 49081020 49202317 49202926 NC_060928.1 CM039037.1 99.18 True indel: indel (<= 5bp) 49081026 49081956 49202927 49203857 NC_060928.1 CM039037.1 99.79 True indel: indel (<= 5bp) 49081957 49082640 49203863 49204546 NC_060928.1 CM039037.1 99.71 True local misassembly 49084315 49084912 49206131 49206728 NC_060928.1 CM039037.1 99.83 True local misassembly 49086254 49086753 49208051 49208550 NC_060928.1 CM039037.1 99.8 True relocation, inconsistency = 13321 49100644 49254059 49209120 49362327 NC_060928.1 CM039037.1 97.85 True relocation, inconsistency = 25026 49279102 49545584 49362344 49629850 NC_060928.1 CM039037.1 99.2 True relocation, inconsistency = -12532 49533053 49545584 49629851 49642378 NC_060928.1 CM039037.1 98.71 True relocation, inconsistency = -12532 49533053 49545570 49642379 49654872 NC_060928.1 CM039037.1 98.78 True relocation, inconsistency = -12532 49533039 49545570 49654873 49667385 NC_060928.1 CM039037.1 98.72 True relocation, inconsistency = -12532 49533039 49545584 49667386 49679962 NC_060928.1 CM039037.1 98.7 True relocation, inconsistency = -12532 49533053 49545570 49679963 49692461 NC_060928.1 CM039037.1 98.69 True relocation, inconsistency = -12532 49533039 49545570 49692462 49705009 NC_060928.1 CM039037.1 98.58 True relocation, inconsistency = -12532 49533039 49545584 49705010 49717581 NC_060928.1 CM039037.1 98.68 True relocation, inconsistency = -12532 49533053 49545570 49717582 49730085 NC_060928.1 CM039037.1 98.73 True relocation, inconsistency = -12532 49533039 49648339 49730086 49845088 NC_060928.1 CM039037.1 98.7 True relocation, inconsistency = 13923 49662263 49663852 49845089 49846678 NC_060928.1 CM039037.1 98.01 True local misassembly 49663853 49665128 49846805 49848080 NC_060928.1 CM039037.1 98.04 True relocation, inconsistency = 12289 49693635 49694263 49864298 49864926 NC_060928.1 CM039037.1 97.46 True local misassembly 49690061 49690655 49864927 49865521 NC_060928.1 CM039037.1 97.48 True relocation, inconsistency = -16164 49678272 49679259 49869302 49870289 NC_060928.1 CM039037.1 97.87 True local misassembly 49701554 49703961 49895357 49897806 NC_060928.1 CM039037.1 96.61 True local misassembly 49704398 49705268 49900796 49901666 NC_060928.1 CM039037.1 98.77 True relocation, inconsistency = 12085 49717354 49734435 49901667 49918745 NC_060928.1 CM039037.1 98.25 True relocation, inconsistency = 5318741 55053575 55120748 49919144 49986313 NC_060928.1 CM039037.1 97.07 True relocation, inconsistency = -35717 55085032 55120560 49986314 50021835 NC_060928.1 CM039037.1 97.06 True relocation, inconsistency = -286483 54834078 54844739 50021836 50032498 NC_060928.1 CM039037.1 98.96 True relocation, inconsistency = -11737 54833115 54845314 50032611 50044811 NC_060928.1 CM039037.1 98.99 True relocation, inconsistency = -46092 54799223 54837361 50044812 50082115 NC_060928.1 CM039037.1 96.94 True relocation, inconsistency = -91169 54746193 54757377 50082116 50093309 NC_060928.1 CM039037.1 99.04 True relocation, inconsistency = -12927 54744451 54754149 50093310 50103014 NC_060928.1 CM039037.1 99.11 True relocation, inconsistency = 51540 54805690 54837361 50103015 50133859 NC_060928.1 CM039037.1 96.48 True relocation, inconsistency = -91169 54746193 54757377 50133860 50145053 NC_060928.1 CM039037.1 99.05 True relocation, inconsistency = -12927 54744451 54759898 50145054 50160511 NC_060928.1 CM039037.1 99.04 True local misassembly 54753436 54759812 50160512 50166894 NC_060928.1 CM039037.1 99.03 True relocation, inconsistency = -4469257 50290556 50293618 50166895 50170129 NC_060928.1 CM039037.1 97.3 True local misassembly 50290387 50297816 50170130 50177736 NC_060928.1 CM039037.1 97.43 True relocation, inconsistency = 4446634 54744451 54759898 50177737 50193193 NC_060928.1 CM039037.1 99.03 True relocation, inconsistency = -12927 54746972 54750917 50193194 50197141 NC_060928.1 CM039037.1 99.09 True local misassembly 54744454 54757377 50197142 50210066 NC_060928.1 CM039037.1 99.15 True relocation, inconsistency = -12927 54744451 54750914 50210067 50216532 NC_060928.1 CM039037.1 99.07 True local misassembly 54744451 54759898 50216533 50231989 NC_060928.1 CM039037.1 99.07 True relocation, inconsistency = -12927 54746972 54757377 50231990 50242400 NC_060928.1 CM039037.1 99.07 True relocation, inconsistency = -12927 54744451 54760711 50242401 50258666 NC_060928.1 CM039037.1 99.08 True relocation, inconsistency = -16159 54744553 54750917 50258667 50265033 NC_060928.1 CM039037.1 99.05 True local misassembly 54744454 54760612 50265034 50281203 NC_060928.1 CM039037.1 99.06 True relocation, inconsistency = 48309 54808922 54837361 50281204 50308806 NC_060928.1 CM039037.1 96.15 True relocation, inconsistency = -23469 54813893 54837363 50308807 50331425 NC_060928.1 CM039037.1 96.09 True relocation, inconsistency = -91169 54746195 54747685 50331426 50333084 NC_060928.1 CM039037.1 97.9 True local misassembly 54741222 54760711 50333085 50352569 NC_060928.1 CM039037.1 99.02 True local misassembly 54757480 54760679 50352570 50355765 NC_060928.1 CM039037.1 99.02 True relocation, inconsistency = -4449865 50310815 50318641 50355766 50363594 NC_060928.1 CM039037.1 99.05 True relocation, inconsistency = 4424695 54744818 54750914 50365076 50371171 NC_060928.1 CM039037.1 99.04 True local misassembly 54744451 54759898 50371172 50386628 NC_060928.1 CM039037.1 99.03 True local misassembly 54753436 54757380 50386629 50390578 NC_060928.1 CM039037.1 99.06 True relocation, inconsistency = -12927 54744454 54757377 50390579 50403511 NC_060928.1 CM039037.1 99.02 True relocation, inconsistency = -12927 54744451 54759898 50403512 50418968 NC_060928.1 CM039037.1 99.04 True relocation, inconsistency = -12927 54746972 54750917 50418969 50422918 NC_060928.1 CM039037.1 99.04 True local misassembly 54744454 54759898 50422919 50438372 NC_060928.1 CM039037.1 99.05 True relocation, inconsistency = -12927 54746972 54758823 50438373 50450233 NC_060928.1 CM039037.1 99.06 True relocation, inconsistency = -12246 54746578 54750914 50450234 50454574 NC_060928.1 CM039037.1 99.05 True local misassembly 54744451 54759898 50454575 50470031 NC_060928.1 CM039037.1 99.07 True local misassembly 54753436 54758823 50470032 50475424 NC_060928.1 CM039037.1 99.07 True relocation, inconsistency = -4716213 50042611 50048637 50475425 50481455 NC_060928.1 CM039037.1 99.22 True relocation, inconsistency = -69405 49979233 49983542 50481456 50485769 NC_060928.1 CM039037.1 99.21 True relocation, inconsistency = 5028578 55012121 55013059 50485770 50486709 NC_060928.1 CM039037.1 98.35 True relocation, inconsistency = -266771 54746578 54750914 50486999 50491339 NC_060928.1 CM039037.1 99.06 True local misassembly 54744451 54759898 50491340 50506796 NC_060928.1 CM039037.1 99.07 True relocation, inconsistency = -12927 54746972 54750914 50506797 50510743 NC_060928.1 CM039037.1 99.08 True local misassembly 54744451 54759898 50510744 50526200 NC_060928.1 CM039037.1 99.07 True relocation, inconsistency = -12927 54746972 54750914 50526201 50530147 NC_060928.1 CM039037.1 99.07 True local misassembly 54744451 54759897 50530148 50545604 NC_060928.1 CM039037.1 99.0 True relocation, inconsistency = -4469257 50290641 50297816 50545605 50552956 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = 4446634 54744451 54759898 50552957 50568413 NC_060928.1 CM039037.1 99.06 True relocation, inconsistency = -12927 54746972 54750914 50568414 50572356 NC_060928.1 CM039037.1 99.14 True local misassembly 54744451 54750914 50572357 50578820 NC_060928.1 CM039037.1 99.1 True local misassembly 54744451 54750914 50578821 50585286 NC_060928.1 CM039037.1 99.06 True local misassembly 54744451 54750914 50585287 50591752 NC_060928.1 CM039037.1 99.06 True local misassembly 54744451 54759898 50591753 50607209 NC_060928.1 CM039037.1 99.05 True local misassembly 54753436 54757377 50607210 50611156 NC_060928.1 CM039037.1 99.01 True relocation, inconsistency = -12927 54744451 54759898 50611157 50626613 NC_060928.1 CM039037.1 99.02 True local misassembly 54753436 54757380 50626614 50630561 NC_060928.1 CM039037.1 99.04 True relocation, inconsistency = -12927 54744454 54750914 50630562 50637026 NC_060928.1 CM039037.1 99.06 True local misassembly 54744451 54759898 50637027 50652483 NC_060928.1 CM039037.1 99.08 True relocation, inconsistency = -12927 54746972 54757377 50652484 50662890 NC_060928.1 CM039037.1 99.1 True relocation, inconsistency = -12927 54744451 54760711 50662891 50679147 NC_060928.1 CM039037.1 99.1 True local misassembly 54754249 54759266 50679148 50684160 NC_060928.1 CM039037.1 99.04 True relocation, inconsistency = -13774 54745497 54750917 50684165 50689583 NC_060928.1 CM039037.1 99.03 True local misassembly 54744454 54747685 50689584 50692813 NC_060928.1 CM039037.1 99.06 True local misassembly 54741222 54742794 50692814 50694384 NC_060928.1 CM039037.1 99.06 True local misassembly 54739563 54759898 50694385 50714707 NC_060928.1 CM039037.1 99.07 True local misassembly 54753436 54758953 50714708 50720220 NC_060928.1 CM039037.1 99.04 True relocation, inconsistency = -19391 54739563 54760776 50720221 50741348 NC_060928.1 CM039037.1 98.69 True relocation, inconsistency = -14964 54746558 54752230 50742094 50747764 NC_060928.1 CM039037.1 98.96 True relocation, inconsistency = 258435 55010666 55011478 50747765 50748577 NC_060928.1 CM039037.1 99.24 True indel: indel (<= 5bp) 55011732 55012669 50748829 50749766 NC_060928.1 CM039037.1 98.19 True relocation, inconsistency = -229350 54783748 54789532 50750195 50755975 NC_060928.1 CM039037.1 98.88 True relocation, inconsistency = -49671 54739862 54742792 50755976 50758905 NC_060928.1 CM039037.1 99.03 True local misassembly 54739561 54760711 50758906 50780039 NC_060928.1 CM039037.1 99.03 True local misassembly 54754249 54755342 50780040 50781133 NC_060928.1 CM039037.1 99.02 True relocation, inconsistency = 28405 54783748 54789632 50781134 50787013 NC_060928.1 CM039037.1 98.88 True local misassembly 54783848 54789532 50787014 50792695 NC_060928.1 CM039037.1 98.93 True relocation, inconsistency = -49671 54739862 54760711 50792696 50813526 NC_060928.1 CM039037.1 98.91 True fake: not a misassembly (possible transposable element) 54751017 54755342 50813527 50817850 NC_060928.1 CM039037.1 98.9 True fake: not a misassembly (possible transposable element) 54763675 54769559 50817851 50823730 NC_060928.1 CM039037.1 98.93 True relocation, inconsistency = 14288 54783848 54789532 50823731 50829412 NC_060928.1 CM039037.1 98.95 True relocation, inconsistency = -49671 54739862 54760711 50829413 50850245 NC_060928.1 CM039037.1 98.9 True local misassembly 54754249 54758117 50850246 50854114 NC_060928.1 CM039037.1 98.82 True indel: stretch of mismatches 54758118 54766457 50854115 50862448 NC_060928.1 CM039037.1 98.73 True relocation, inconsistency = -23132 54743326 54760686 50862449 50879798 NC_060928.1 CM039037.1 98.91 True relocation, inconsistency = -18879 54741808 54760711 50879799 50898695 NC_060928.1 CM039037.1 98.97 True local misassembly 54754249 54754999 50898696 50899446 NC_060928.1 CM039037.1 98.86 True relocation, inconsistency = -4712814 50042186 50048373 50899447 50905625 NC_060928.1 CM039037.1 99.12 True relocation, inconsistency = 4694952 54743326 54760776 50905626 50923063 NC_060928.1 CM039037.1 98.9 True relocation, inconsistency = -4426731 50334046 50336675 50923064 50925693 NC_060928.1 CM039037.1 99.3 True relocation, inconsistency = -289139 50047537 50050256 50925694 50928413 NC_060928.1 CM039037.1 99.27 True relocation, inconsistency = 4691551 54741808 54751767 50928414 50938369 NC_060928.1 CM039037.1 98.99 True relocation, inconsistency = -8847 54742921 54760711 50938370 50956143 NC_060928.1 CM039037.1 99.02 True local misassembly 54754249 54755234 50956144 50957127 NC_060928.1 CM039037.1 99.0 True local misassembly 54761696 54762652 50957128 50958084 NC_060928.1 CM039037.1 98.02 True relocation, inconsistency = -13268 54749385 54754999 50958085 50963693 NC_060928.1 CM039037.1 98.97 True relocation, inconsistency = -15311 54739689 54760711 50963694 50984703 NC_060928.1 CM039037.1 99.02 True relocation, inconsistency = -16159 54744553 54755303 50984704 50995448 NC_060928.1 CM039037.1 98.89 True relocation, inconsistency = -8847 54746457 54747272 50995449 50996264 NC_060928.1 CM039037.1 99.46 True indel: indel (<= 5bp) 54747275 54748726 50996265 50997716 NC_060928.1 CM039037.1 98.69 True indel: indel (<= 5bp) 54748729 54750504 50997717 50999492 NC_060928.1 CM039037.1 99.49 True indel: indel (<= 5bp) 54750507 54752222 50999493 51001208 NC_060928.1 CM039037.1 98.54 True local misassembly 54752564 54755472 51001209 51004117 NC_060928.1 CM039037.1 99.04 True local misassembly 54755813 54758421 51004118 51006726 NC_060928.1 CM039037.1 99.27 True indel: indel (<= 5bp) 54758424 54760686 51006727 51008989 NC_060928.1 CM039037.1 99.19 True local misassembly 54762389 54768348 51008990 51014943 NC_060928.1 CM039037.1 98.94 True relocation, inconsistency = -4759587 50008762 50014705 51014944 51020881 NC_060928.1 CM039037.1 99.36 True relocation, inconsistency = 4730334 54745040 54747685 51020882 51023525 NC_060928.1 CM039037.1 99.0 True local misassembly 54741222 54760711 51023526 51042998 NC_060928.1 CM039037.1 98.98 True local misassembly 54757480 54758230 51042999 51043749 NC_060928.1 CM039037.1 98.95 True relocation, inconsistency = -8846 54749385 54759748 51043750 51053765 NC_060928.1 CM039037.1 95.72 True relocation, inconsistency = -4777965 49981784 49983402 51053766 51055384 NC_060928.1 CM039037.1 99.05 True relocation, inconsistency = 25351 50008754 50017848 51055385 51064473 NC_060928.1 CM039037.1 99.25 True relocation, inconsistency = -9184 50008754 50014713 51064563 51070516 NC_060928.1 CM039037.1 99.24 True relocation, inconsistency = 280468 50295182 50297893 51070517 51073226 NC_060928.1 CM039037.1 99.45 True relocation, inconsistency = -289140 50008754 50014705 51073227 51079172 NC_060928.1 CM039037.1 99.41 True relocation, inconsistency = 4730334 54745040 54747685 51079173 51081816 NC_060928.1 CM039037.1 98.97 True local misassembly 54741222 54742792 51081817 51083385 NC_060928.1 CM039037.1 98.97 True local misassembly 54739561 54760711 51083386 51104517 NC_060928.1 CM039037.1 98.96 True relocation, inconsistency = 246526 55007238 55015859 51104518 51113130 NC_060928.1 CM039037.1 97.87 True relocation, inconsistency = -276299 54739561 54760711 51113131 51134268 NC_060928.1 CM039037.1 99.03 True fake: not a misassembly (possible transposable element) 55009622 55013162 51134269 51137807 NC_060928.1 CM039037.1 97.89 True fake: not a misassembly (possible transposable element) 54760677 54769420 51137808 51146543 NC_060928.1 CM039037.1 98.73 True relocation, inconsistency = 241256 55010677 55012755 51146544 51148620 NC_060928.1 CM039037.1 97.89 True relocation, inconsistency = -273067 54739689 54760711 51148621 51169626 NC_060928.1 CM039037.1 99.02 True relocation, inconsistency = -4713662 50047050 50050989 51169627 51173223 NC_060928.1 CM039037.1 95.89 True relocation, inconsistency = 354964 50406338 50418071 51173608 51184999 NC_060928.1 CM039037.1 96.1 True relocation, inconsistency = 4345095 54763675 54774727 51185508 51196554 NC_060928.1 CM039037.1 98.95 True relocation, inconsistency = -30277 54744451 54759898 51196555 51211993 NC_060928.1 CM039037.1 98.9 True local misassembly 54753436 54759898 51211994 51218453 NC_060928.1 CM039037.1 98.87 True relocation, inconsistency = -4684405 50076051 50084412 51219011 51227364 NC_060928.1 CM039037.1 98.9 True local misassembly 50081181 50082550 51227365 51228733 NC_060928.1 CM039037.1 98.83 True local misassembly 50076087 50084412 51228734 51237052 NC_060928.1 CM039037.1 98.87 True relocation, inconsistency = 244234 50329166 50337408 51237572 51245807 NC_060928.1 CM039037.1 98.68 True local misassembly 50330945 50335629 51245808 51250487 NC_060928.1 CM039037.1 98.74 True local misassembly 50329166 50336593 51250488 51257908 NC_060928.1 CM039037.1 98.77 True relocation, inconsistency = -296115 50040479 50050385 51257909 51267808 NC_060928.1 CM039037.1 98.93 True relocation, inconsistency = 28067 50078453 50082797 51267809 51272150 NC_060928.1 CM039037.1 99.13 True relocation, inconsistency = 4663824 54746622 54757510 51272151 51283034 NC_060928.1 CM039037.1 98.85 True relocation, inconsistency = -14117 54743394 54760002 51283035 51299634 NC_060928.1 CM039037.1 98.72 True relocation, inconsistency = 8844 54768847 54773604 51299635 51304388 NC_060928.1 CM039037.1 98.57 True relocation, inconsistency = -29087 54744518 54760002 51304389 51319865 NC_060928.1 CM039037.1 98.72 True relocation, inconsistency = -14969 54745034 54750917 51319866 51325745 NC_060928.1 CM039037.1 98.89 True local misassembly 54744454 54757377 51325746 51338662 NC_060928.1 CM039037.1 98.93 True relocation, inconsistency = -12927 54744451 54759898 51338663 51354101 NC_060928.1 CM039037.1 98.86 True relocation, inconsistency = -4430475 50329424 50336593 51354102 51361264 NC_060928.1 CM039037.1 98.71 True relocation, inconsistency = -296115 50040479 50049075 51361265 51369853 NC_060928.1 CM039037.1 98.77 True relocation, inconsistency = -7994 50041082 50050385 51369854 51379149 NC_060928.1 CM039037.1 98.89 True relocation, inconsistency = 4710430 54760816 54764775 51379150 51383107 NC_060928.1 CM039037.1 98.84 True relocation, inconsistency = -4723694 50041082 50050312 51383108 51392330 NC_060928.1 CM039037.1 98.89 True relocation, inconsistency = 4693081 54743394 54757583 51392331 51406511 NC_060928.1 CM039037.1 98.75 True local misassembly 54756394 54770372 51406512 51420482 NC_060928.1 CM039037.1 98.8 True relocation, inconsistency = -12928 54757445 54760738 51420483 51423774 NC_060928.1 CM039037.1 98.81 True relocation, inconsistency = -4350873 50409866 50425992 51423775 51439897 NC_060928.1 CM039037.1 98.78 True relocation, inconsistency = -385407 50040586 50050989 51439898 51450223 NC_060928.1 CM039037.1 98.1 True relocation, inconsistency = 283187 50334177 50335629 51450224 51451674 NC_060928.1 CM039037.1 98.79 True local misassembly 50329166 50337351 51451675 51459853 NC_060928.1 CM039037.1 98.84 True relocation, inconsistency = 4420779 54758131 54770407 51459854 51472122 NC_060928.1 CM039037.1 98.8 True relocation, inconsistency = -8506 54761902 54765237 51472123 51475456 NC_060928.1 CM039037.1 98.96 True relocation, inconsistency = -4474869 50290384 50295337 51475472 51480422 NC_060928.1 CM039037.1 98.9 True relocation, inconsistency = 4462793 54758131 54767175 51480423 51489461 NC_060928.1 CM039037.1 98.85 True relocation, inconsistency = -9696 54757480 54763908 51489462 51495886 NC_060928.1 CM039037.1 98.42 True local misassembly 54757445 54767656 51495887 51506092 NC_060928.1 CM039037.1 98.52 True local misassembly 54768847 54773704 51506093 51510946 NC_060928.1 CM039037.1 98.88 True relocation, inconsistency = -18197 54756246 54757506 51511685 51512945 NC_060928.1 CM039037.1 99.03 True relocation, inconsistency = -4344411 50413096 50419494 51512946 51519343 NC_060928.1 CM039037.1 98.73 True relocation, inconsistency = -89293 50330202 50335475 51519344 51524614 NC_060928.1 CM039037.1 98.82 True relocation, inconsistency = 4425201 54760677 54771494 51524615 51535428 NC_060928.1 CM039037.1 98.7 True relocation, inconsistency = -4309099 50465481 50466042 51538514 51539071 NC_060928.1 CM039037.1 96.62 True relocation, inconsistency = 562752 51028800 51029545 51539077 51539822 NC_060928.1 CM039037.1 98.79 True relocation, inconsistency = 3888753 54918607 54920266 51540131 51541789 NC_060928.1 CM039037.1 97.83 True local misassembly 54920720 54923417 51542361 51545058 NC_060928.1 CM039037.1 97.85 True local misassembly 54918648 54920266 51545069 51546687 NC_060928.1 CM039037.1 98.15 True relocation, inconsistency = -3910239 51012178 51012866 51548838 51549526 NC_060928.1 CM039037.1 96.81 True relocation, inconsistency = 31420 51044815 51045394 51550055 51550634 NC_060928.1 CM039037.1 96.9 True local misassembly 51045731 51046774 51550635 51551678 NC_060928.1 CM039037.1 97.32 True relocation, inconsistency = 3832047 54882849 54883944 51555706 51556801 NC_060928.1 CM039037.1 96.99 True local misassembly 54885142 54886004 51558034 51558896 NC_060928.1 CM039037.1 97.8 True relocation, inconsistency = -4376680 50514709 50515239 51564281 51564811 NC_060928.1 CM039037.1 97.36 True indel: indel (> 5bp) 50515354 50516104 51564969 51565719 NC_060928.1 CM039037.1 97.87 True relocation, inconsistency = 193993 50710475 50712878 51566097 51568542 NC_060928.1 CM039037.1 95.71 True relocation, inconsistency = 4171737 54885220 54885908 51569147 51569835 NC_060928.1 CM039037.1 97.97 True relocation, inconsistency = -4416973 50470112 50471026 51571012 51571926 NC_060928.1 CM039037.1 97.6 True indel: indel (> 5bp) 50471111 50472540 51571927 51573356 NC_060928.1 CM039037.1 96.36 True relocation, inconsistency = 4398581 54871122 54871883 51573357 51574118 NC_060928.1 CM039037.1 98.18 True relocation, inconsistency = -4046685 50825244 50825773 51574164 51574693 NC_060928.1 CM039037.1 98.11 True relocation, inconsistency = 459655 51288149 51288872 51577414 51578137 NC_060928.1 CM039037.1 98.62 True relocation, inconsistency = -143091 51148888 51151997 51581244 51584301 NC_060928.1 CM039037.1 96.01 True relocation, inconsistency = 57134 51210572 51211421 51585742 51586591 NC_060928.1 CM039037.1 97.41 True indel: indel (<= 5bp) 51211426 51212117 51586592 51587283 NC_060928.1 CM039037.1 97.25 True local misassembly 51209874 51210378 51587492 51587996 NC_060928.1 CM039037.1 97.43 True local misassembly 51210572 51211421 51588643 51589492 NC_060928.1 CM039037.1 97.29 True indel: indel (<= 5bp) 51211426 51212626 51589493 51590693 NC_060928.1 CM039037.1 97.0 True local misassembly 51209874 51210597 51591771 51592494 NC_060928.1 CM039037.1 96.82 True local misassembly 51210598 51211421 51592662 51593485 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212294 51593486 51594354 NC_060928.1 CM039037.1 97.58 True relocation, inconsistency = 844487 52070135 52070965 51607708 51608538 NC_060928.1 CM039037.1 98.07 True local misassembly 52071418 52072755 51608539 51609876 NC_060928.1 CM039037.1 97.09 True relocation, inconsistency = -1609656 50466753 50467494 51613530 51614271 NC_060928.1 CM039037.1 96.36 True relocation, inconsistency = -34479 50438936 50439805 51620192 51621061 NC_060928.1 CM039037.1 98.16 True relocation, inconsistency = 69526 50514709 50515239 51626439 51626969 NC_060928.1 CM039037.1 97.55 True indel: indel (> 5bp) 50515354 50516104 51627127 51627877 NC_060928.1 CM039037.1 97.87 True relocation, inconsistency = 193993 50710475 50712878 51628255 51630700 NC_060928.1 CM039037.1 95.71 True relocation, inconsistency = 298695 51012178 51012866 51631305 51631993 NC_060928.1 CM039037.1 96.95 True relocation, inconsistency = -543973 50470112 50471026 51633212 51634126 NC_060928.1 CM039037.1 97.49 True indel: indel (> 5bp) 50471111 50472540 51634127 51635556 NC_060928.1 CM039037.1 96.36 True fake: not a misassembly (possible transposable element) 50962188 50963036 51635557 51636405 NC_060928.1 CM039037.1 97.11 True fake: not a misassembly (possible transposable element) 50478371 50479448 51638112 51639189 NC_060928.1 CM039037.1 96.85 True fake: not a misassembly (possible transposable element) 50664049 50664910 51639190 51640051 NC_060928.1 CM039037.1 96.88 True fake: not a misassembly (possible transposable element) 50482086 50482878 51642291 51643083 NC_060928.1 CM039037.1 96.09 True relocation, inconsistency = 662751 51148888 51151997 51646342 51649399 NC_060928.1 CM039037.1 96.01 True relocation, inconsistency = -687968 50464259 50464823 51649629 51650193 NC_060928.1 CM039037.1 96.64 True local misassembly 50465017 50465866 51650840 51651689 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467078 51651690 51652897 NC_060928.1 CM039037.1 96.77 True relocation, inconsistency = 4503988 54971812 54972594 51653643 51654425 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = -3764125 51210407 51213049 51656363 51658958 NC_060928.1 CM039037.1 95.61 True local misassembly 51210598 51212044 51660546 51661988 NC_060928.1 CM039037.1 97.24 True relocation, inconsistency = -786586 50438936 50439805 51675466 51676335 NC_060928.1 CM039037.1 98.05 True relocation, inconsistency = 69526 50514709 50515239 51681713 51682243 NC_060928.1 CM039037.1 97.55 True indel: indel (> 5bp) 50515354 50516104 51682401 51683151 NC_060928.1 CM039037.1 97.87 True relocation, inconsistency = 193993 50710475 50712878 51683529 51685974 NC_060928.1 CM039037.1 95.71 True relocation, inconsistency = 298695 51012178 51012866 51686579 51687267 NC_060928.1 CM039037.1 96.95 True relocation, inconsistency = -543973 50470112 50471026 51688486 51689400 NC_060928.1 CM039037.1 97.49 True indel: indel (> 5bp) 50471111 50472540 51689401 51690830 NC_060928.1 CM039037.1 96.36 True fake: not a misassembly (possible transposable element) 50831155 50832003 51690831 51691679 NC_060928.1 CM039037.1 96.99 True fake: not a misassembly (possible transposable element) 50478371 50479448 51693386 51694463 NC_060928.1 CM039037.1 96.85 True fake: not a misassembly (possible transposable element) 50831142 50832003 51694464 51695325 NC_060928.1 CM039037.1 97.11 True fake: not a misassembly (possible transposable element) 50482086 50482878 51697565 51698357 NC_060928.1 CM039037.1 96.09 True relocation, inconsistency = 662751 51148888 51151997 51701616 51704673 NC_060928.1 CM039037.1 96.01 True relocation, inconsistency = -687968 50464259 50464823 51704903 51705467 NC_060928.1 CM039037.1 96.64 True local misassembly 50465017 50465866 51706114 51706963 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467078 51706964 51708171 NC_060928.1 CM039037.1 96.77 True relocation, inconsistency = 4503988 54971812 54972594 51708917 51709699 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = -3764125 51210407 51213049 51711637 51714232 NC_060928.1 CM039037.1 95.57 True relocation, inconsistency = 760215 51973961 51974684 51714929 51715652 NC_060928.1 CM039037.1 97.1 True local misassembly 51974685 51975508 51715820 51716643 NC_060928.1 CM039037.1 97.33 True indel: indel (<= 5bp) 51975513 51976028 51716644 51717159 NC_060928.1 CM039037.1 97.67 True relocation, inconsistency = -1543025 50442071 50442751 51726227 51726907 NC_060928.1 CM039037.1 96.62 True relocation, inconsistency = 4467200 54914947 54915552 51731903 51732508 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -2996788 51922308 51923138 51736052 51736882 NC_060928.1 CM039037.1 97.95 True local misassembly 51923591 51924928 51736883 51738220 NC_060928.1 CM039037.1 97.16 True local misassembly 51929825 51931219 51742101 51743495 NC_060928.1 CM039037.1 96.92 True relocation, inconsistency = -785961 51148888 51151997 51747125 51750187 NC_060928.1 CM039037.1 96.17 True relocation, inconsistency = 57134 51210572 51211421 51751628 51752477 NC_060928.1 CM039037.1 97.41 True indel: indel (<= 5bp) 51211426 51212626 51752478 51753678 NC_060928.1 CM039037.1 97.0 True local misassembly 51209874 51210597 51754756 51755479 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 51755647 51756470 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 51756471 51757305 NC_060928.1 CM039037.1 97.49 True relocation, inconsistency = -787558 50446152 50448184 51778755 51780782 NC_060928.1 CM039037.1 97.29 True relocation, inconsistency = 15773 50464259 50464823 51781084 51781648 NC_060928.1 CM039037.1 96.81 True local misassembly 50465017 50465866 51782295 51783144 NC_060928.1 CM039037.1 97.06 True indel: indel (<= 5bp) 50465871 50467078 51783145 51784352 NC_060928.1 CM039037.1 96.77 True relocation, inconsistency = -24654 50443090 50443959 51785018 51785887 NC_060928.1 CM039037.1 97.93 True relocation, inconsistency = 930890 51375793 51380079 51786831 51791117 NC_060928.1 CM039037.1 95.5 True relocation, inconsistency = 494746 51875315 51876540 51791607 51792832 NC_060928.1 CM039037.1 97.96 True local misassembly 51876541 51877456 51793077 51793992 NC_060928.1 CM039037.1 96.62 True relocation, inconsistency = -724174 51155020 51155632 51795730 51796342 NC_060928.1 CM039037.1 97.06 True relocation, inconsistency = 49832 51206414 51209433 51797292 51800264 NC_060928.1 CM039037.1 96.13 True local misassembly 51210572 51211421 51801780 51802629 NC_060928.1 CM039037.1 97.41 True indel: indel (<= 5bp) 51211426 51212626 51802630 51803830 NC_060928.1 CM039037.1 97.09 True relocation, inconsistency = -689532 50525802 50526414 51806538 51807150 NC_060928.1 CM039037.1 97.06 True relocation, inconsistency = 679050 51206414 51209433 51808100 51811073 NC_060928.1 CM039037.1 96.16 True relocation, inconsistency = -745479 50464259 50464823 51811378 51811942 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 51812589 51813438 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467071 51813439 51814639 NC_060928.1 CM039037.1 96.84 True relocation, inconsistency = 4503988 54971812 54972594 51815392 51816174 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = -3580448 51394248 51395097 51818276 51819125 NC_060928.1 CM039037.1 97.53 True indel: indel (<= 5bp) 51395102 51395701 51819126 51819725 NC_060928.1 CM039037.1 96.0 True relocation, inconsistency = -187506 51209874 51210597 51821404 51822127 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 51822295 51823118 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 51823119 51823953 NC_060928.1 CM039037.1 97.49 True relocation, inconsistency = -780182 50442071 50442841 51833946 51834716 NC_060928.1 CM039037.1 96.37 True relocation, inconsistency = -7376 50446152 50448184 51845403 51847430 NC_060928.1 CM039037.1 97.25 True relocation, inconsistency = 15773 50464259 50464823 51847732 51848296 NC_060928.1 CM039037.1 96.81 True local misassembly 50465017 50465866 51848943 51849792 NC_060928.1 CM039037.1 97.06 True indel: indel (<= 5bp) 50465871 50467078 51849793 51851000 NC_060928.1 CM039037.1 96.77 True relocation, inconsistency = -24654 50443090 50443959 51851666 51852535 NC_060928.1 CM039037.1 97.93 True relocation, inconsistency = 1089921 51534824 51539110 51853479 51857765 NC_060928.1 CM039037.1 95.47 True relocation, inconsistency = -390092 51149508 51151893 51858255 51860640 NC_060928.1 CM039037.1 97.57 True relocation, inconsistency = -140236 51012178 51012866 51861161 51861849 NC_060928.1 CM039037.1 96.66 True local misassembly 51013998 51014973 51863026 51864001 NC_060928.1 CM039037.1 97.64 True relocation, inconsistency = 3863848 54882849 54883944 51868029 51869124 NC_060928.1 CM039037.1 97.08 True local misassembly 54885142 54886004 51870357 51871219 NC_060928.1 CM039037.1 97.8 True relocation, inconsistency = -4376680 50514709 50515239 51876604 51877134 NC_060928.1 CM039037.1 97.55 True indel: indel (> 5bp) 50515354 50516104 51877292 51878042 NC_060928.1 CM039037.1 97.74 True relocation, inconsistency = 193993 50710475 50712878 51878420 51880865 NC_060928.1 CM039037.1 95.71 True relocation, inconsistency = 298695 51012178 51012866 51881470 51882158 NC_060928.1 CM039037.1 96.95 True relocation, inconsistency = -543931 50470112 50471026 51883335 51884249 NC_060928.1 CM039037.1 97.6 True indel: indel (> 5bp) 50471111 50472540 51884250 51885679 NC_060928.1 CM039037.1 96.36 True fake: not a misassembly (possible transposable element) 50831155 50832003 51885680 51886528 NC_060928.1 CM039037.1 97.11 True fake: not a misassembly (possible transposable element) 50482086 50482878 51888768 51889560 NC_060928.1 CM039037.1 96.09 True relocation, inconsistency = 662751 51148888 51151997 51892819 51895876 NC_060928.1 CM039037.1 96.08 True relocation, inconsistency = -687968 50464259 50464823 51896106 51896670 NC_060928.1 CM039037.1 96.64 True local misassembly 50465017 50465866 51897317 51898166 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467078 51898167 51899374 NC_060928.1 CM039037.1 96.69 True relocation, inconsistency = 923221 51390965 51391827 51900040 51900902 NC_060928.1 CM039037.1 97.68 True relocation, inconsistency = -183358 51210407 51213049 51902840 51905435 NC_060928.1 CM039037.1 95.57 True local misassembly 51209874 51210597 51906132 51906855 NC_060928.1 CM039037.1 96.82 True local misassembly 51210598 51211421 51907023 51907846 NC_060928.1 CM039037.1 97.21 True indel: indel (<= 5bp) 51211426 51212294 51907847 51908715 NC_060928.1 CM039037.1 97.7 True relocation, inconsistency = -778971 50442071 50442841 51917463 51918233 NC_060928.1 CM039037.1 96.37 True local misassembly 50446094 50446598 51921139 51921643 NC_060928.1 CM039037.1 98.22 True relocation, inconsistency = 763326 51210407 51213049 51922126 51924721 NC_060928.1 CM039037.1 95.61 True local misassembly 51210598 51212294 51926309 51928001 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -777896 50442071 50442751 51935674 51936354 NC_060928.1 CM039037.1 96.62 True relocation, inconsistency = 4467494 54914947 54915552 51941056 51941661 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -2996788 51922308 51923138 51945205 51946035 NC_060928.1 CM039037.1 98.07 True local misassembly 51923591 51924928 51946036 51947373 NC_060928.1 CM039037.1 97.16 True local misassembly 51929825 51931219 51951296 51952690 NC_060928.1 CM039037.1 96.92 True relocation, inconsistency = -785961 51148888 51151997 51956320 51959382 NC_060928.1 CM039037.1 96.17 True relocation, inconsistency = -687968 50464259 50464823 51959612 51960176 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 51960823 51961672 NC_060928.1 CM039037.1 97.06 True indel: indel (<= 5bp) 50465871 50467071 51961673 51962873 NC_060928.1 CM039037.1 96.84 True relocation, inconsistency = -24654 50443090 50443959 51963546 51964415 NC_060928.1 CM039037.1 98.05 True relocation, inconsistency = 764517 51210407 51213049 51966346 51968941 NC_060928.1 CM039037.1 95.69 True local misassembly 51209874 51210597 51969638 51970361 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 51970529 51971352 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 51971353 51972187 NC_060928.1 CM039037.1 97.6 True relocation, inconsistency = -780139 50442071 50442841 51982137 51982907 NC_060928.1 CM039037.1 96.37 True local misassembly 50446152 50448184 51990964 51992991 NC_060928.1 CM039037.1 97.1 True relocation, inconsistency = 15773 50464259 50464823 51993293 51993857 NC_060928.1 CM039037.1 96.81 True local misassembly 50465017 50465866 51994504 51995353 NC_060928.1 CM039037.1 97.06 True indel: indel (<= 5bp) 50465871 50467078 51995354 51996561 NC_060928.1 CM039037.1 96.77 True relocation, inconsistency = -24654 50443090 50443959 51997227 51998096 NC_060928.1 CM039037.1 97.93 True relocation, inconsistency = 764517 51210407 51213049 52000027 52002622 NC_060928.1 CM039037.1 95.61 True local misassembly 51209874 51210597 52003319 52004042 NC_060928.1 CM039037.1 96.82 True local misassembly 51210598 51211421 52004210 52005033 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52005034 52005868 NC_060928.1 CM039037.1 97.6 True relocation, inconsistency = -714493 50502608 50503118 52010709 52011219 NC_060928.1 CM039037.1 98.04 True indel: indel (> 5bp) 50503203 50503788 52011220 52011805 NC_060928.1 CM039037.1 96.42 True relocation, inconsistency = 868652 51374860 51378112 52014225 52017430 NC_060928.1 CM039037.1 96.31 True relocation, inconsistency = -929691 50449867 50450536 52018876 52019545 NC_060928.1 CM039037.1 96.57 True relocation, inconsistency = 1070364 51521873 51524968 52020518 52023562 NC_060928.1 CM039037.1 96.19 True relocation, inconsistency = -16151 51510368 51510893 52025113 52025638 NC_060928.1 CM039037.1 97.92 True relocation, inconsistency = -107710 51403184 51404010 52025639 52026465 NC_060928.1 CM039037.1 98.43 True local misassembly 51405479 51408604 52027924 52030998 NC_060928.1 CM039037.1 96.13 True relocation, inconsistency = -944670 50464259 50464823 52031323 52031887 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 52032534 52033383 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467071 52033384 52034584 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -24654 50443090 50443959 52035257 52036126 NC_060928.1 CM039037.1 97.59 True relocation, inconsistency = 764517 51210407 51213049 52038057 52040652 NC_060928.1 CM039037.1 95.65 True local misassembly 51209874 51210597 52041349 52042072 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52042240 52043063 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212236 52043064 52043874 NC_060928.1 CM039037.1 97.29 True relocation, inconsistency = 3697831 54914953 54915552 52048760 52049359 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -4473365 50446152 50448184 52053324 52055351 NC_060928.1 CM039037.1 97.2 True relocation, inconsistency = 761328 51209874 51210378 52055713 52056217 NC_060928.1 CM039037.1 97.43 True local misassembly 51210572 51211421 52056864 52057713 NC_060928.1 CM039037.1 97.29 True indel: indel (<= 5bp) 51211426 51212626 52057714 52058914 NC_060928.1 CM039037.1 97.0 True fake: not a misassembly (possible transposable element) 50443090 50443959 52059587 52060456 NC_060928.1 CM039037.1 98.05 True fake: not a misassembly (possible transposable element) 51210407 51213049 52062387 52064982 NC_060928.1 CM039037.1 95.5 True local misassembly 51209874 51210597 52065679 52066402 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52066570 52067393 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52067394 52068228 NC_060928.1 CM039037.1 97.49 True relocation, inconsistency = -775678 50442071 50442841 52073717 52074487 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 759034 51209874 51210597 52082486 52083209 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52083377 52084200 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52084201 52085035 NC_060928.1 CM039037.1 97.49 True relocation, inconsistency = -775678 50442071 50442841 52090524 52091294 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = -10100 50442071 50442841 52100624 52101394 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 760244 51209874 51210597 52108183 52108906 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52109074 52109897 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52109898 52110732 NC_060928.1 CM039037.1 97.37 True relocation, inconsistency = -774468 50442071 50442841 52115011 52115781 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 4430800 54882614 54883944 52124754 52126084 NC_060928.1 CM039037.1 97.07 True relocation, inconsistency = -3872371 51012178 51012866 52126689 52127377 NC_060928.1 CM039037.1 96.95 True relocation, inconsistency = 31420 51044815 51045394 52127906 52128485 NC_060928.1 CM039037.1 97.07 True local misassembly 51045731 51046773 52128486 52129528 NC_060928.1 CM039037.1 97.32 True relocation, inconsistency = 140689 51191433 51192587 52133499 52134652 NC_060928.1 CM039037.1 96.54 True local misassembly 51193953 51194815 52135885 52136747 NC_060928.1 CM039037.1 97.45 True local misassembly 51196790 51197574 52138898 52139682 NC_060928.1 CM039037.1 97.32 True relocation, inconsistency = 94253 51293298 51294297 52141153 52142152 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -630366 50664046 50664868 52142267 52143089 NC_060928.1 CM039037.1 97.08 True relocation, inconsistency = 4218253 54885220 54886004 52145188 52145972 NC_060928.1 CM039037.1 98.22 True relocation, inconsistency = 44871 54932760 54933345 52147857 52148442 NC_060928.1 CM039037.1 96.76 True relocation, inconsistency = -62354 54871062 54871928 52148513 52149379 NC_060928.1 CM039037.1 97.69 True relocation, inconsistency = -4393030 50478899 50479428 52149380 52149909 NC_060928.1 CM039037.1 98.11 True relocation, inconsistency = 726821 51207668 51209433 52151328 52153089 NC_060928.1 CM039037.1 97.28 True relocation, inconsistency = 177287 51388563 51389417 52154932 52155786 NC_060928.1 CM039037.1 97.66 True indel: indel (<= 5bp) 51389419 51390179 52155787 52156547 NC_060928.1 CM039037.1 97.37 True indel: indel (> 5bp) 51390222 51390929 52156548 52157255 NC_060928.1 CM039037.1 96.75 True indel: indel (> 5bp) 51390965 51391819 52157334 52158188 NC_060928.1 CM039037.1 97.19 True relocation, inconsistency = -521737 50872281 50872949 52160387 52161055 NC_060928.1 CM039037.1 98.65 True local misassembly 50874484 50875272 52162613 52163401 NC_060928.1 CM039037.1 97.85 True relocation, inconsistency = 4059947 54936427 54937852 52164609 52166034 NC_060928.1 CM039037.1 97.34 True indel: indel (> 5bp) 54938047 54938571 52166150 52166674 NC_060928.1 CM039037.1 97.14 True relocation, inconsistency = -4061013 50878134 50878754 52167250 52167870 NC_060928.1 CM039037.1 97.91 True relocation, inconsistency = 4040544 54919754 54920253 52168326 52168825 NC_060928.1 CM039037.1 96.8 True local misassembly 54920692 54922695 52169382 52171425 NC_060928.1 CM039037.1 95.94 True relocation, inconsistency = -49925 54885142 54886004 52183797 52184659 NC_060928.1 CM039037.1 98.61 True relocation, inconsistency = -4410797 50478371 50479448 52187823 52188900 NC_060928.1 CM039037.1 96.85 True local misassembly 50480726 50481773 52190222 52191269 NC_060928.1 CM039037.1 97.9 True local misassembly 50481774 50482878 52191564 52192668 NC_060928.1 CM039037.1 96.47 True relocation, inconsistency = 4401031 54885142 54886004 52193901 52194763 NC_060928.1 CM039037.1 98.61 True relocation, inconsistency = -4376638 50514710 50515239 52200107 52200636 NC_060928.1 CM039037.1 97.55 True indel: indel (> 5bp) 50515354 50516136 52200794 52201576 NC_060928.1 CM039037.1 97.96 True relocation, inconsistency = -70943 50445707 50448152 52202090 52204535 NC_060928.1 CM039037.1 97.22 True relocation, inconsistency = 4436463 54885220 54885908 52205140 52205828 NC_060928.1 CM039037.1 97.82 True relocation, inconsistency = -4416973 50470112 50471026 52207005 52207919 NC_060928.1 CM039037.1 97.49 True indel: indel (> 5bp) 50471111 50472540 52207920 52209349 NC_060928.1 CM039037.1 96.36 True relocation, inconsistency = 358614 50831155 50832003 52209350 52210198 NC_060928.1 CM039037.1 97.11 True relocation, inconsistency = -386883 50447360 50448152 52212438 52213230 NC_060928.1 CM039037.1 95.84 True relocation, inconsistency = 1082466 51534076 51536986 52216688 52219546 NC_060928.1 CM039037.1 95.91 True relocation, inconsistency = -387895 51150368 51151387 52220823 52221841 NC_060928.1 CM039037.1 97.75 True relocation, inconsistency = -334623 50817023 50817624 52222100 52222701 NC_060928.1 CM039037.1 96.51 True indel: indel (<= 5bp) 50817629 50818517 52222702 52223590 NC_060928.1 CM039037.1 96.74 True relocation, inconsistency = 4091586 54914947 54915552 52228434 52229039 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -4454485 50466724 50467494 52234696 52235466 NC_060928.1 CM039037.1 96.63 True relocation, inconsistency = 1449556 51922308 51923138 52240724 52241554 NC_060928.1 CM039037.1 98.07 True local misassembly 51923591 51924928 52241555 52242892 NC_060928.1 CM039037.1 97.09 True relocation, inconsistency = 138898 52070135 52070965 52249201 52250031 NC_060928.1 CM039037.1 98.07 True local misassembly 52071418 52072755 52250032 52251369 NC_060928.1 CM039037.1 97.09 True relocation, inconsistency = -156756 51922308 51923138 52257678 52258508 NC_060928.1 CM039037.1 98.07 True local misassembly 51923591 51924928 52258509 52259846 NC_060928.1 CM039037.1 97.09 True relocation, inconsistency = -1218688 50710475 50712878 52264081 52266526 NC_060928.1 CM039037.1 95.67 True relocation, inconsistency = 127328 50842453 50842996 52268773 52269316 NC_060928.1 CM039037.1 97.24 True indel: indel (> 5bp) 50843081 50843920 52269317 52270156 NC_060928.1 CM039037.1 97.62 True relocation, inconsistency = 556840 51405479 51408604 52274875 52277953 NC_060928.1 CM039037.1 96.26 True relocation, inconsistency = -21902 51388074 51390006 52279325 52281294 NC_060928.1 CM039037.1 95.19 True local misassembly 51390965 51391827 52282212 52283074 NC_060928.1 CM039037.1 97.68 True relocation, inconsistency = -183358 51210407 51213049 52285012 52287607 NC_060928.1 CM039037.1 95.69 True relocation, inconsistency = -63911 51149835 51150558 52288304 52289027 NC_060928.1 CM039037.1 97.24 True local misassembly 51150559 51151382 52289195 52290018 NC_060928.1 CM039037.1 97.57 True indel: indel (<= 5bp) 51151387 51151997 52290019 52290629 NC_060928.1 CM039037.1 97.22 True relocation, inconsistency = -717723 50442071 50442841 52298426 52299196 NC_060928.1 CM039037.1 96.37 True relocation, inconsistency = 4468619 54914953 54915552 52302689 52303288 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -4478265 50442071 50442841 52308072 52308842 NC_060928.1 CM039037.1 96.37 True relocation, inconsistency = -11594 50446152 50448184 52323747 52325774 NC_060928.1 CM039037.1 97.25 True relocation, inconsistency = 761328 51209874 51210378 52326136 52326640 NC_060928.1 CM039037.1 97.43 True relocation, inconsistency = 177213 51388074 51390285 52327123 52329329 NC_060928.1 CM039037.1 96.93 True local misassembly 51390965 51391827 52329884 52330746 NC_060928.1 CM039037.1 97.68 True relocation, inconsistency = -183358 51210407 51213049 52332684 52335279 NC_060928.1 CM039037.1 95.65 True relocation, inconsistency = -749427 50464333 50465042 52335990 52336699 NC_060928.1 CM039037.1 97.04 True local misassembly 50465043 50465866 52336867 52337690 NC_060928.1 CM039037.1 97.21 True indel: indel (<= 5bp) 50465871 50466710 52337691 52338530 NC_060928.1 CM039037.1 97.38 True relocation, inconsistency = 1049231 51521873 51525981 52344462 52348481 NC_060928.1 CM039037.1 95.4 True relocation, inconsistency = -316804 51209874 51210597 52349178 52349901 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52350069 52350892 NC_060928.1 CM039037.1 97.33 True indel: indel (<= 5bp) 51211426 51212236 52350893 52351703 NC_060928.1 CM039037.1 97.41 True relocation, inconsistency = -10334 51209874 51210597 52359675 52360398 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52360566 52361389 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52361390 52362224 NC_060928.1 CM039037.1 97.37 True relocation, inconsistency = -16644 51209874 51210597 52376482 52377205 NC_060928.1 CM039037.1 96.82 True local misassembly 51210598 51211421 52377373 52378196 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212260 52378197 52379031 NC_060928.1 CM039037.1 97.37 True relocation, inconsistency = -775502 50446822 50448152 52389095 52390425 NC_060928.1 CM039037.1 96.69 True relocation, inconsistency = 563421 51012178 51012866 52391030 52391718 NC_060928.1 CM039037.1 96.95 True local misassembly 51013998 51014972 52392895 52393869 NC_060928.1 CM039037.1 97.33 True relocation, inconsistency = -213458 50801658 50802884 52394013 52395239 NC_060928.1 CM039037.1 96.41 True relocation, inconsistency = 582961 51388677 51389599 52398071 52398993 NC_060928.1 CM039037.1 96.42 True local misassembly 51390965 51391827 52400226 52401088 NC_060928.1 CM039037.1 97.57 True relocation, inconsistency = -197189 51196790 51197574 52403240 52404024 NC_060928.1 CM039037.1 97.07 True relocation, inconsistency = -727634 50471111 50472540 52405195 52406624 NC_060928.1 CM039037.1 96.36 True relocation, inconsistency = 1639323 52111974 52112989 52406735 52407754 NC_060928.1 CM039037.1 96.18 True relocation, inconsistency = -709999 51405479 51408604 52410243 52413321 NC_060928.1 CM039037.1 96.23 True relocation, inconsistency = 143343 51553848 51555019 52415222 52416393 NC_060928.1 CM039037.1 98.38 True relocation, inconsistency = 3332741 54888011 54888562 52416644 52417194 NC_060928.1 CM039037.1 96.92 True local misassembly 54889929 54890478 52418348 52418897 NC_060928.1 CM039037.1 98.36 True relocation, inconsistency = 28749 54919754 54920253 52419424 52419923 NC_060928.1 CM039037.1 96.6 True local misassembly 54920692 54922791 52420480 52422619 NC_060928.1 CM039037.1 96.03 True relocation, inconsistency = -3712784 51210050 51213049 52422662 52425659 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -788233 50443090 50443959 52443933 52444802 NC_060928.1 CM039037.1 98.16 True relocation, inconsistency = 31255 50478371 50479448 52447959 52449036 NC_060928.1 CM039037.1 96.57 True relocation, inconsistency = 906677 51387447 51388530 52450358 52451441 NC_060928.1 CM039037.1 98.06 True indel: stretch of mismatches 51388645 51390285 52451556 52453192 NC_060928.1 CM039037.1 96.95 True fake: not a misassembly (possible transposable element) 50438936 50439805 52453873 52454742 NC_060928.1 CM039037.1 98.05 True fake: not a misassembly (possible transposable element) 51388074 51390285 52456673 52458879 NC_060928.1 CM039037.1 97.06 True relocation, inconsistency = -947876 50443090 50443959 52459560 52460429 NC_060928.1 CM039037.1 98.05 True relocation, inconsistency = 764517 51210407 51213049 52462360 52464955 NC_060928.1 CM039037.1 95.65 True local misassembly 51209874 51210597 52465652 52466375 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52466543 52467366 NC_060928.1 CM039037.1 97.33 True indel: indel (<= 5bp) 51211426 51212260 52467367 52468201 NC_060928.1 CM039037.1 97.37 True relocation, inconsistency = -25071 51209874 51210597 52490886 52491609 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52491777 52492600 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212278 52492601 52493453 NC_060928.1 CM039037.1 97.3 True relocation, inconsistency = -775678 50442071 50442841 52498924 52499694 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 4459031 54914947 54915552 52512769 52513374 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = 42652 54961042 54962002 52516212 52517172 NC_060928.1 CM039037.1 95.73 True relocation, inconsistency = -3773472 51188758 51189337 52517400 52517979 NC_060928.1 CM039037.1 97.24 True relocation, inconsistency = 3691533 54883152 54883944 52520261 52521053 NC_060928.1 CM039037.1 96.72 True local misassembly 54885142 54885972 52522286 52523116 NC_060928.1 CM039037.1 98.38 True relocation, inconsistency = -2962382 51923591 51924928 52523117 52524454 NC_060928.1 CM039037.1 97.23 True relocation, inconsistency = -1336847 50592549 50593770 52528922 52530143 NC_060928.1 CM039037.1 96.56 True relocation, inconsistency = -145862 50449867 50450517 52532102 52532752 NC_060928.1 CM039037.1 96.93 True relocation, inconsistency = 954095 51405479 51408604 52533619 52536692 NC_060928.1 CM039037.1 96.16 True relocation, inconsistency = -944670 50464259 50464823 52537017 52537581 NC_060928.1 CM039037.1 96.64 True local misassembly 50465017 50465866 52538228 52539077 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467078 52539078 52540285 NC_060928.1 CM039037.1 96.69 True relocation, inconsistency = 4503988 54971812 54972594 52541031 52541813 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = -3764125 51210407 51213049 52543751 52546346 NC_060928.1 CM039037.1 95.54 True relocation, inconsistency = 3668140 54881886 54882609 52547043 52547766 NC_060928.1 CM039037.1 96.96 True local misassembly 54882610 54883433 52547934 52548757 NC_060928.1 CM039037.1 97.82 True local misassembly 54885142 54886004 52549917 52550779 NC_060928.1 CM039037.1 98.15 True relocation, inconsistency = -3288202 51598148 51599108 52551125 52552085 NC_060928.1 CM039037.1 98.02 True relocation, inconsistency = -1088478 50514709 50515239 52556164 52556694 NC_060928.1 CM039037.1 97.55 True indel: indel (> 5bp) 50515354 50516104 52556852 52557602 NC_060928.1 CM039037.1 97.87 True relocation, inconsistency = 193993 50710475 50712878 52557980 52560425 NC_060928.1 CM039037.1 95.71 True relocation, inconsistency = 4171737 54885220 54885908 52561030 52561718 NC_060928.1 CM039037.1 97.97 True relocation, inconsistency = -4416973 50470112 50471026 52562895 52563809 NC_060928.1 CM039037.1 97.6 True indel: indel (> 5bp) 50471111 50472540 52563810 52565239 NC_060928.1 CM039037.1 96.43 True fake: not a misassembly (possible transposable element) 50962188 50963036 52565240 52566088 NC_060928.1 CM039037.1 97.11 True fake: not a misassembly (possible transposable element) 50478371 50479448 52567795 52568872 NC_060928.1 CM039037.1 96.94 True fake: not a misassembly (possible transposable element) 50664049 50664910 52568873 52569734 NC_060928.1 CM039037.1 96.99 True fake: not a misassembly (possible transposable element) 50482086 50482872 52571974 52572760 NC_060928.1 CM039037.1 96.06 True relocation, inconsistency = 919453 51405479 51408604 52575914 52578983 NC_060928.1 CM039037.1 96.03 True relocation, inconsistency = -944670 50464259 50464823 52579308 52579872 NC_060928.1 CM039037.1 96.64 True local misassembly 50465017 50465866 52580519 52581368 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467078 52581369 52582576 NC_060928.1 CM039037.1 96.69 True relocation, inconsistency = 923221 51390965 51391827 52583242 52584104 NC_060928.1 CM039037.1 97.68 True local misassembly 51394248 51395097 52586206 52587055 NC_060928.1 CM039037.1 97.65 True indel: indel (<= 5bp) 51395102 51395701 52587056 52587655 NC_060928.1 CM039037.1 96.17 True relocation, inconsistency = -188502 51209874 51210597 52590330 52591053 NC_060928.1 CM039037.1 96.82 True local misassembly 51210598 51211421 52591221 52592044 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212294 52592045 52592913 NC_060928.1 CM039037.1 97.58 True relocation, inconsistency = -776888 50442071 50442841 52599578 52600348 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 1090707 51535062 51536986 52601862 52603781 NC_060928.1 CM039037.1 97.45 True relocation, inconsistency = -1072957 50464259 50464823 52604011 52604575 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 52605222 52606071 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467071 52606072 52607272 NC_060928.1 CM039037.1 96.75 True relocation, inconsistency = -24654 50443090 50443959 52607945 52608814 NC_060928.1 CM039037.1 98.05 True relocation, inconsistency = 764517 51210407 51213049 52610745 52613340 NC_060928.1 CM039037.1 95.69 True local misassembly 51209874 51210597 52614037 52614760 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52614928 52615751 NC_060928.1 CM039037.1 97.33 True indel: indel (<= 5bp) 51211426 51212260 52615752 52616586 NC_060928.1 CM039037.1 97.6 True relocation, inconsistency = 3698999 54914947 54915552 52620274 52620879 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -4482727 50442071 50442841 52630125 52630895 NC_060928.1 CM039037.1 96.24 True relocation, inconsistency = -8246 50437917 50438687 52634217 52634987 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 766070 51210039 51212117 52640269 52642342 NC_060928.1 CM039037.1 97.4 True local misassembly 51209874 51210378 52642551 52643055 NC_060928.1 CM039037.1 97.43 True local misassembly 51210572 51211421 52643702 52644551 NC_060928.1 CM039037.1 97.29 True indel: indel (<= 5bp) 51211426 51212211 52644552 52645337 NC_060928.1 CM039037.1 97.33 True relocation, inconsistency = 3666633 54885142 54886004 52651635 52652497 NC_060928.1 CM039037.1 98.61 True relocation, inconsistency = -3359200 51528721 51529670 52654414 52655363 NC_060928.1 CM039037.1 97.58 True relocation, inconsistency = -1051597 50478371 50479236 52655661 52656526 NC_060928.1 CM039037.1 96.3 True local misassembly 50480726 50481681 52658018 52658973 NC_060928.1 CM039037.1 97.91 True local misassembly 50481682 50482878 52659268 52660464 NC_060928.1 CM039037.1 96.49 True relocation, inconsistency = 4401031 54885142 54886004 52661697 52662559 NC_060928.1 CM039037.1 98.61 True relocation, inconsistency = -4376680 50514709 50515239 52667944 52668474 NC_060928.1 CM039037.1 97.36 True indel: indel (> 5bp) 50515354 50516104 52668632 52669382 NC_060928.1 CM039037.1 97.87 True local misassembly 50516557 50517831 52669383 52670657 NC_060928.1 CM039037.1 97.33 True indel: indel (> 5bp) 50518060 50518587 52670845 52671372 NC_060928.1 CM039037.1 97.35 True relocation, inconsistency = 4365447 54885220 54885908 52672558 52673246 NC_060928.1 CM039037.1 97.97 True relocation, inconsistency = -4416973 50470112 50471026 52674423 52675337 NC_060928.1 CM039037.1 97.6 True indel: indel (> 5bp) 50471111 50472540 52675338 52676767 NC_060928.1 CM039037.1 96.22 True fake: not a misassembly (possible transposable element) 50831155 50832003 52676768 52677616 NC_060928.1 CM039037.1 97.11 True fake: not a misassembly (possible transposable element) 50478371 50479448 52679323 52680400 NC_060928.1 CM039037.1 96.75 True relocation, inconsistency = 482726 50962175 50963036 52680401 52681262 NC_060928.1 CM039037.1 96.99 True relocation, inconsistency = -382068 50582713 50583277 52683007 52683571 NC_060928.1 CM039037.1 96.81 True local misassembly 50583278 50583799 52683698 52684219 NC_060928.1 CM039037.1 96.17 True relocation, inconsistency = 4335746 54921084 54923049 52685758 52687723 NC_060928.1 CM039037.1 98.07 True relocation, inconsistency = -3716311 51206739 51208306 52687724 52689244 NC_060928.1 CM039037.1 95.46 True local misassembly 51210407 51213049 52691194 52693789 NC_060928.1 CM039037.1 95.65 True fake: not a misassembly (possible transposable element) 51826134 51826857 52694486 52695209 NC_060928.1 CM039037.1 97.24 True fake: not a misassembly (possible transposable element) 51210598 51212294 52695377 52697069 NC_060928.1 CM039037.1 97.29 True relocation, inconsistency = 3697789 54914947 54915552 52701933 52702538 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -4480348 50442071 50442775 52709405 52710109 NC_060928.1 CM039037.1 96.45 True relocation, inconsistency = 1473588 51922308 51923138 52716054 52716884 NC_060928.1 CM039037.1 98.07 True local misassembly 51923591 51924928 52716885 52718222 NC_060928.1 CM039037.1 97.16 True relocation, inconsistency = -1218688 50710475 50712878 52722457 52724902 NC_060928.1 CM039037.1 95.67 True relocation, inconsistency = 4171737 54885220 54885913 52725507 52726200 NC_060928.1 CM039037.1 98.41 True relocation, inconsistency = -3913375 50973145 50974953 52726807 52728616 NC_060928.1 CM039037.1 97.73 True relocation, inconsistency = 425807 51405479 51408604 52733335 52736413 NC_060928.1 CM039037.1 96.32 True relocation, inconsistency = -944670 50464259 50464823 52736738 52737302 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 52737949 52738798 NC_060928.1 CM039037.1 97.18 True indel: indel (<= 5bp) 50465871 50467071 52738799 52739999 NC_060928.1 CM039037.1 96.75 True relocation, inconsistency = 923221 51390965 51391827 52740672 52741534 NC_060928.1 CM039037.1 97.8 True local misassembly 51394248 51395097 52743636 52744485 NC_060928.1 CM039037.1 97.41 True indel: indel (<= 5bp) 51395102 51395701 52744486 52745085 NC_060928.1 CM039037.1 95.83 True relocation, inconsistency = -901910 50495470 50496067 52746764 52747361 NC_060928.1 CM039037.1 96.66 True indel: indel (> 5bp) 50496110 50496933 52747362 52748185 NC_060928.1 CM039037.1 96.12 True relocation, inconsistency = 714492 51211426 51212236 52748186 52748996 NC_060928.1 CM039037.1 97.53 True relocation, inconsistency = 3697789 54914947 54915552 52753918 52754523 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -4477911 50446094 50446732 52762976 52763614 NC_060928.1 CM039037.1 97.18 True relocation, inconsistency = 763906 51210639 51211421 52763615 52764397 NC_060928.1 CM039037.1 97.32 True indel: indel (<= 5bp) 51211426 51212236 52764398 52765208 NC_060928.1 CM039037.1 97.53 True relocation, inconsistency = 3697789 54914947 54915552 52770130 52770735 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -4486937 50442071 50442841 52784191 52784961 NC_060928.1 CM039037.1 96.37 True relocation, inconsistency = 763958 51209874 51210597 52788036 52788759 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52788927 52789750 NC_060928.1 CM039037.1 97.33 True indel: indel (<= 5bp) 51211426 51212260 52789751 52790585 NC_060928.1 CM039037.1 97.6 True relocation, inconsistency = -608407 50606526 50607051 52793258 52793783 NC_060928.1 CM039037.1 97.34 True local misassembly 50608663 50609237 52795210 52795784 NC_060928.1 CM039037.1 97.74 True relocation, inconsistency = 776381 51386608 51389860 52796774 52799979 NC_060928.1 CM039037.1 96.4 True relocation, inconsistency = 380393 51770405 51770934 52800131 52800660 NC_060928.1 CM039037.1 97.74 True relocation, inconsistency = -1321832 50449867 50450509 52801425 52802067 NC_060928.1 CM039037.1 96.89 True relocation, inconsistency = 954096 51405479 51408604 52802941 52806015 NC_060928.1 CM039037.1 96.13 True relocation, inconsistency = -199568 51210572 51211421 52807551 52808400 NC_060928.1 CM039037.1 97.29 True indel: indel (<= 5bp) 51211426 51212236 52808401 52809211 NC_060928.1 CM039037.1 97.53 True relocation, inconsistency = -753252 50464333 50465042 52814560 52815269 NC_060928.1 CM039037.1 97.04 True local misassembly 50465043 50465866 52815437 52816260 NC_060928.1 CM039037.1 97.21 True indel: indel (<= 5bp) 50465871 50466710 52816261 52817100 NC_060928.1 CM039037.1 97.14 True relocation, inconsistency = 4443386 54914953 54915552 52821957 52822556 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -3709587 51210407 51213049 52826998 52829593 NC_060928.1 CM039037.1 95.61 True relocation, inconsistency = -778090 50446943 50448152 52841577 52842786 NC_060928.1 CM039037.1 96.69 True relocation, inconsistency = 748033 51196790 51197478 52843391 52844079 NC_060928.1 CM039037.1 97.24 True relocation, inconsistency = -184656 51013998 51014972 52845255 52846229 NC_060928.1 CM039037.1 97.33 True relocation, inconsistency = -213458 50801658 50802884 52846373 52847599 NC_060928.1 CM039037.1 96.33 True relocation, inconsistency = 386032 51191433 51192587 52850116 52851269 NC_060928.1 CM039037.1 96.45 True local misassembly 51193953 51194815 52852502 52853364 NC_060928.1 CM039037.1 97.33 True local misassembly 51196790 51197574 52855516 52856300 NC_060928.1 CM039037.1 97.32 True relocation, inconsistency = 266654 51465699 51466698 52857771 52858770 NC_060928.1 CM039037.1 96.1 True relocation, inconsistency = 3466605 54934244 54934770 52859711 52860237 NC_060928.1 CM039037.1 97.53 True relocation, inconsistency = -4385139 50550474 50551038 52861080 52861644 NC_060928.1 CM039037.1 97.52 True relocation, inconsistency = 853566 51405479 51408604 52862519 52865597 NC_060928.1 CM039037.1 96.26 True relocation, inconsistency = 143343 51553848 51555019 52867498 52868669 NC_060928.1 CM039037.1 98.55 True relocation, inconsistency = 3332741 54888011 54888562 52868920 52869470 NC_060928.1 CM039037.1 96.92 True local misassembly 54889929 54890478 52870624 52871173 NC_060928.1 CM039037.1 98.18 True local misassembly 54898365 54903136 52875150 52880006 NC_060928.1 CM039037.1 95.29 True relocation, inconsistency = -4432490 50471201 50471782 52880561 52881142 NC_060928.1 CM039037.1 96.74 True indel: indel (> 5bp) 50471825 50472842 52881143 52882160 NC_060928.1 CM039037.1 96.56 True relocation, inconsistency = 4463922 54938047 54938571 52883443 52883967 NC_060928.1 CM039037.1 97.14 True relocation, inconsistency = -4360182 50578980 50579609 52884558 52885187 NC_060928.1 CM039037.1 97.94 True relocation, inconsistency = 627969 51210050 51213049 52887659 52890656 NC_060928.1 CM039037.1 97.07 True relocation, inconsistency = 160745 51388074 51390285 52904936 52907142 NC_060928.1 CM039037.1 96.97 True relocation, inconsistency = -947876 50443090 50443959 52907823 52908692 NC_060928.1 CM039037.1 98.05 True relocation, inconsistency = 18962 50464852 50467494 52910623 52913218 NC_060928.1 CM039037.1 95.38 True relocation, inconsistency = 4436378 54914947 54915552 52924293 52924898 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -8058 54914947 54915552 52932351 52932956 NC_060928.1 CM039037.1 96.53 True local misassembly 54914953 54915552 52934735 52935334 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -37489 54881886 54884129 52939157 52941395 NC_060928.1 CM039037.1 97.37 True relocation, inconsistency = -3361532 51522806 51524658 52941604 52943456 NC_060928.1 CM039037.1 97.52 True local misassembly 51529259 51530691 52947835 52949267 NC_060928.1 CM039037.1 97.56 True local misassembly 51531496 51532204 52949986 52950694 NC_060928.1 CM039037.1 96.9 True fake: not a misassembly (possible transposable element) 51210039 51212117 52956181 52958254 NC_060928.1 CM039037.1 97.4 True fake: not a misassembly (possible transposable element) 51534824 51536700 52958463 52960339 NC_060928.1 CM039037.1 97.5 True indel: indel (<= 5bp) 51536702 51537237 52960340 52960875 NC_060928.1 CM039037.1 98.51 True local misassembly 51537658 51538213 52960876 52961431 NC_060928.1 CM039037.1 97.12 True indel: indel (> 5bp) 51538328 51539110 52961589 52962371 NC_060928.1 CM039037.1 97.7 True relocation, inconsistency = -828981 50710475 50712878 52962717 52965162 NC_060928.1 CM039037.1 95.63 True relocation, inconsistency = 258362 50973145 50974953 52967067 52968876 NC_060928.1 CM039037.1 97.57 True relocation, inconsistency = 68770 51045051 51045645 52970204 52970798 NC_060928.1 CM039037.1 97.65 True indel: indel (> 5bp) 51045730 51046315 52970799 52971384 NC_060928.1 CM039037.1 96.93 True relocation, inconsistency = 356869 51405479 51408604 52973679 52976757 NC_060928.1 CM039037.1 96.16 True relocation, inconsistency = -944670 50464259 50464823 52977082 52977646 NC_060928.1 CM039037.1 96.46 True local misassembly 50465017 50465866 52978293 52979142 NC_060928.1 CM039037.1 97.06 True indel: indel (<= 5bp) 50465871 50467071 52979143 52980343 NC_060928.1 CM039037.1 96.75 True relocation, inconsistency = 1460775 51928530 51929381 52981027 52981878 NC_060928.1 CM039037.1 97.54 True relocation, inconsistency = -542791 51387541 51388263 52982829 52983551 NC_060928.1 CM039037.1 97.51 True indel: indel (> 5bp) 51388264 51389088 52983635 52984459 NC_060928.1 CM039037.1 97.58 True indel: indel (<= 5bp) 51389093 51389703 52984460 52985070 NC_060928.1 CM039037.1 97.22 True fake: not a misassembly (possible transposable element) 52070135 52070997 52987078 52987940 NC_060928.1 CM039037.1 97.91 True fake: not a misassembly (possible transposable element) 51394248 51395097 52990042 52990891 NC_060928.1 CM039037.1 97.65 True indel: indel (<= 5bp) 51395102 51395701 52990892 52991491 NC_060928.1 CM039037.1 96.17 True relocation, inconsistency = -187506 51209874 51210597 52993170 52993893 NC_060928.1 CM039037.1 96.96 True local misassembly 51210598 51211421 52994061 52994884 NC_060928.1 CM039037.1 97.45 True indel: indel (<= 5bp) 51211426 51212236 52994885 52995695 NC_060928.1 CM039037.1 97.53 True relocation, inconsistency = 794693 52010454 52011160 52999220 52999926 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -1546285 50465043 50465866 53000094 53000917 NC_060928.1 CM039037.1 97.09 True indel: indel (<= 5bp) 50465871 50466710 53000918 53001757 NC_060928.1 CM039037.1 97.26 True relocation, inconsistency = 4443386 54914947 54915552 53006608 53007213 NC_060928.1 CM039037.1 96.7 True relocation, inconsistency = -9100 54914953 54915552 53015714 53016313 NC_060928.1 CM039037.1 96.67 True relocation, inconsistency = -3384635 51534989 51537148 53020385 53022539 NC_060928.1 CM039037.1 97.31 True relocation, inconsistency = -146158 51390991 51391827 53022540 53023376 NC_060928.1 CM039037.1 97.68 True relocation, inconsistency = -183358 51210407 51213049 53025314 53027909 NC_060928.1 CM039037.1 95.65 True relocation, inconsistency = -625548 50593910 50594551 53034318 53034959 NC_060928.1 CM039037.1 97.2 True relocation, inconsistency = 56172 50655240 50655808 53039476 53040044 NC_060928.1 CM039037.1 96.31 True relocation, inconsistency = 4229481 54914941 54915552 53069696 53070307 NC_060928.1 CM039037.1 96.41 True relocation, inconsistency = -2839456 52076357 52077208 53070568 53071419 NC_060928.1 CM039037.1 97.42 True relocation, inconsistency = -1366869 50710475 50711098 53071555 53072178 NC_060928.1 CM039037.1 97.6 True indel: indel (> 5bp) 50711099 50712342 53072221 53073464 NC_060928.1 CM039037.1 97.59 True relocation, inconsistency = -42608 50669735 50670414 53073465 53074144 NC_060928.1 CM039037.1 98.84 True relocation, inconsistency = 341345 51012178 51012866 53074563 53075251 NC_060928.1 CM039037.1 97.1 True local misassembly 51013998 51014972 53076428 53077402 NC_060928.1 CM039037.1 97.33 True relocation, inconsistency = -213458 50801658 50802884 53077546 53078772 NC_060928.1 CM039037.1 96.5 True relocation, inconsistency = 583002 51388378 51389599 53081264 53082485 NC_060928.1 CM039037.1 96.73 True local misassembly 51390965 51391827 53083676 53084538 NC_060928.1 CM039037.1 97.91 True relocation, inconsistency = 106029 51499246 51499938 53085928 53086620 NC_060928.1 CM039037.1 97.4 True local misassembly 51502023 51502590 53088819 53089386 NC_060928.1 CM039037.1 97.89 True relocation, inconsistency = 3414240 54919303 54920266 53091859 53092821 NC_060928.1 CM039037.1 97.2 True local misassembly 54920692 54922385 53093323 53094974 NC_060928.1 CM039037.1 95.51 True relocation, inconsistency = -40360 54882062 54884210 53095011 53097157 NC_060928.1 CM039037.1 97.72 True local misassembly 54884580 54885107 53097653 53098180 NC_060928.1 CM039037.1 96.02 True indel: indel (> 5bp) 54885108 54885962 53098224 53099078 NC_060928.1 CM039037.1 98.25 True relocation, inconsistency = -3096060 51792770 51793635 53101946 53102811 NC_060928.1 CM039037.1 97.58 True relocation, inconsistency = -173768 51622126 51622871 53105070 53105813 NC_060928.1 CM039037.1 97.72 True relocation, inconsistency = 458751 52082604 52083346 53106795 53107537 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -651773 51433748 51436066 53109712 53112030 NC_060928.1 CM039037.1 97.5 True relocation, inconsistency = 3490267 54927330 54927981 53113027 53113678 NC_060928.1 CM039037.1 97.03 True relocation, inconsistency = -4418800 50509182 50510325 53113679 53114821 NC_060928.1 CM039037.1 97.29 True relocation, inconsistency = -72448 50438358 50438901 53115302 53115845 NC_060928.1 CM039037.1 97.24 True indel: indel (> 5bp) 50439016 50439707 53116003 53116694 NC_060928.1 CM039037.1 97.4 True relocation, inconsistency = 4491203 54931173 54931752 53116957 53117536 NC_060928.1 CM039037.1 97.24 True indel: indel (> 5bp) 54931837 54932366 53117537 53118066 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -3782975 51150600 51151893 53119275 53120568 NC_060928.1 CM039037.1 96.6 True relocation, inconsistency = -59518 51093026 51093696 53121219 53121889 NC_060928.1 CM039037.1 98.21 True local misassembly 51093823 51094934 53121890 53123001 NC_060928.1 CM039037.1 97.48 True relocation, inconsistency = -121020 50974035 50974939 53123122 53124026 NC_060928.1 CM039037.1 97.68 True indel: indel (> 5bp) 50975024 50975674 53124027 53124677 NC_060928.1 CM039037.1 95.24 True indel: indel (<= 5bp) 50975675 50976258 53124679 53125262 NC_060928.1 CM039037.1 96.58 True relocation, inconsistency = 3937550 54918419 54920266 53129873 53131720 NC_060928.1 CM039037.1 97.89 True local misassembly 54920692 54921627 53132264 53133199 NC_060928.1 CM039037.1 97.76 True local misassembly 54921912 54923417 53133200 53134705 NC_060928.1 CM039037.1 97.74 True relocation, inconsistency = -3713046 51210501 51212339 53134835 53136672 NC_060928.1 CM039037.1 97.93 True relocation, inconsistency = -767644 50445707 50448152 53137684 53140129 NC_060928.1 CM039037.1 97.22 True relocation, inconsistency = 425169 50875937 50876920 53142745 53143728 NC_060928.1 CM039037.1 96.34 True fake: not a misassembly (possible transposable element) 54921084 54922301 53145011 53146228 NC_060928.1 CM039037.1 97.78 True fake: not a misassembly (possible transposable element) 50878559 50879197 53146229 53146867 NC_060928.1 CM039037.1 98.65 True relocation, inconsistency = 912150 51791896 51793635 53147416 53149196 NC_060928.1 CM039037.1 95.45 True relocation, inconsistency = 3131889 54925647 54926441 53149319 53150113 NC_060928.1 CM039037.1 96.35 True indel: indel (> 5bp) 54926613 54927186 53150241 53150814 NC_060928.1 CM039037.1 96.17 True local misassembly 54933208 54933874 53157042 53157708 NC_060928.1 CM039037.1 98.05 True fake: not a misassembly (possible transposable element) 54903520 54904581 53158825 53159885 NC_060928.1 CM039037.1 97.18 True fake: not a misassembly (possible transposable element) 54936410 54936990 53160400 53160980 NC_060928.1 CM039037.1 96.39 True indel: indel (> 5bp) 54937136 54937960 53161082 53161906 NC_060928.1 CM039037.1 96.51 True relocation, inconsistency = -31314 54906647 54910002 53161907 53165219 NC_060928.1 CM039037.1 95.74 True relocation, inconsistency = -3329076 51580927 51581545 53165220 53165838 NC_060928.1 CM039037.1 95.19 True relocation, inconsistency = 3314441 54896194 54896843 53166046 53166695 NC_060928.1 CM039037.1 96.77 True fake: not a misassembly (possible transposable element) 51036277 51040027 53167614 53171404 NC_060928.1 CM039037.1 96.52 True fake: not a misassembly (possible transposable element) 54902240 54903094 53171925 53172779 NC_060928.1 CM039037.1 97.66 True relocation, inconsistency = -3811979 51093749 51096021 53175413 53177685 NC_060928.1 CM039037.1 97.59 True relocation, inconsistency = 236835 51332857 51335331 53177686 53180201 NC_060928.1 CM039037.1 95.39 True relocation, inconsistency = -893664 50442509 50443055 53181043 53181589 NC_060928.1 CM039037.1 97.62 True indel: indel (> 5bp) 50443172 50443861 53181749 53182438 NC_060928.1 CM039037.1 97.54 True relocation, inconsistency = 709350 51153922 51156953 53183149 53186138 NC_060928.1 CM039037.1 96.37 True relocation, inconsistency = -721635 50435368 50436126 53186188 53186988 NC_060928.1 CM039037.1 95.36 True fake: not a misassembly (possible transposable element) 50940034 50942117 53186989 53189071 NC_060928.1 CM039037.1 97.17 True fake: not a misassembly (possible transposable element) 50438355 50438901 53189460 53190006 NC_060928.1 CM039037.1 97.26 True indel: indel (> 5bp) 50439016 50439707 53190164 53190855 NC_060928.1 CM039037.1 97.54 True relocation, inconsistency = 4491203 54931173 54931752 53191118 53191697 NC_060928.1 CM039037.1 97.07 True indel: indel (> 5bp) 54931837 54932366 53191698 53192227 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = -3782975 51150600 51151893 53193436 53194729 NC_060928.1 CM039037.1 96.45 True relocation, inconsistency = 958793 52111301 52112669 53195344 53196712 NC_060928.1 CM039037.1 97.66 True relocation, inconsistency = -1183969 50929695 50930241 53197707 53198253 NC_060928.1 CM039037.1 96.89 True fake: not a misassembly (possible transposable element) 51560568 51561262 53200710 53201404 NC_060928.1 CM039037.1 97.12 True fake: not a misassembly (possible transposable element) 50933805 50935098 53201641 53202934 NC_060928.1 CM039037.1 96.52 True relocation, inconsistency = -422552 50513197 50513867 53203585 53204255 NC_060928.1 CM039037.1 97.76 True local misassembly 50513994 50514626 53204256 53204888 NC_060928.1 CM039037.1 97.47 True relocation, inconsistency = 4421701 54936785 54937852 53205346 53206413 NC_060928.1 CM039037.1 96.63 True indel: indel (> 5bp) 54938049 54938886 53206531 53207368 NC_060928.1 CM039037.1 97.02 True relocation, inconsistency = -3965047 50974099 50974939 53207628 53208468 NC_060928.1 CM039037.1 97.62 True indel: indel (> 5bp) 50975024 50975674 53208469 53209119 NC_060928.1 CM039037.1 95.24 True indel: indel (<= 5bp) 50975675 50976258 53209121 53209704 NC_060928.1 CM039037.1 96.23 True relocation, inconsistency = -502153 50475665 50476891 53211264 53212490 NC_060928.1 CM039037.1 96.41 True relocation, inconsistency = 292136 50769903 50771011 53213366 53214473 NC_060928.1 CM039037.1 97.11 True relocation, inconsistency = 262651 51037910 51041529 53218721 53222340 NC_060928.1 CM039037.1 95.09 True fake: not a misassembly (possible transposable element) 51149620 51150690 53222898 53223967 NC_060928.1 CM039037.1 97.29 True fake: not a misassembly (possible transposable element) 51044440 51045216 53224970 53225746 NC_060928.1 CM039037.1 97.43 True indel: indel (<= 5bp) 51045219 51046738 53225747 53227266 NC_060928.1 CM039037.1 97.24 True relocation, inconsistency = 106885 51154484 51156567 53228127 53230209 NC_060928.1 CM039037.1 97.26 True relocation, inconsistency = -67521 51089435 51089981 53230598 53231144 NC_060928.1 CM039037.1 97.26 True indel: indel (> 5bp) 51090096 51090780 53231302 53231986 NC_060928.1 CM039037.1 96.93 True local misassembly 51097749 51098556 53232004 53232811 NC_060928.1 CM039037.1 98.17 True local misassembly 51091680 51092987 53232812 53234119 NC_060928.1 CM039037.1 97.48 True relocation, inconsistency = -585868 50507120 50508240 53234120 53235240 NC_060928.1 CM039037.1 97.03 True relocation, inconsistency = 692522 51201040 51201596 53235518 53236074 NC_060928.1 CM039037.1 96.95 True indel: indel (> 5bp) 51201735 51202320 53236128 53236713 NC_060928.1 CM039037.1 97.1 True relocation, inconsistency = -364725 50838817 50839793 53237935 53238911 NC_060928.1 CM039037.1 97.13 True relocation, inconsistency = 202956 51043717 51044387 53239879 53240549 NC_060928.1 CM039037.1 97.76 True local misassembly 51044514 51045517 53240550 53241553 NC_060928.1 CM039037.1 97.91 True relocation, inconsistency = -202619 50842899 50843906 53241554 53242561 NC_060928.1 CM039037.1 97.22 True indel: indel (> 5bp) 50844219 50845226 53242832 53243839 NC_060928.1 CM039037.1 96.83 True relocation, inconsistency = -387848 50458259 50458761 53244720 53245222 NC_060928.1 CM039037.1 98.21 True relocation, inconsistency = 509880 50969850 50970826 53246431 53247407 NC_060928.1 CM039037.1 97.65 True relocation, inconsistency = 71923 51043717 51044387 53248375 53249045 NC_060928.1 CM039037.1 97.62 True local misassembly 51044514 51045517 53249046 53250049 NC_060928.1 CM039037.1 98.01 True local misassembly 51045728 51046777 53250050 53251099 NC_060928.1 CM039037.1 96.86 True relocation, inconsistency = 196407 51244619 51245261 53252534 53253176 NC_060928.1 CM039037.1 98.29 True relocation, inconsistency = -43512 51201804 51202320 53253231 53253747 NC_060928.1 CM039037.1 98.07 True relocation, inconsistency = -364725 50838817 50839793 53254969 53255945 NC_060928.1 CM039037.1 97.34 True relocation, inconsistency = 202956 51043717 51044387 53256913 53257583 NC_060928.1 CM039037.1 97.76 True local misassembly 51044514 51045603 53257584 53258673 NC_060928.1 CM039037.1 97.34 True indel: indel (> 5bp) 51046079 51046777 53259103 53259801 NC_060928.1 CM039037.1 97.0 True relocation, inconsistency = 3904033 54951039 54952151 53260030 53261142 NC_060928.1 CM039037.1 96.59 True relocation, inconsistency = -3567528 51386543 51391657 53263062 53268174 NC_060928.1 CM039037.1 95.73 True relocation, inconsistency = 538048 51929825 51931371 53268294 53269840 NC_060928.1 CM039037.1 96.44 True relocation, inconsistency = -139891 51792770 51793635 53271130 53271995 NC_060928.1 CM039037.1 97.34 True relocation, inconsistency = -1289764 50504655 50505704 53272779 53273828 NC_060928.1 CM039037.1 97.24 True relocation, inconsistency = 151491 50658151 50658680 53274784 53275313 NC_060928.1 CM039037.1 98.3 True relocation, inconsistency = 309173 50969850 50970592 53277310 53278052 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = 1108605 52079747 52080985 53278602 53279840 NC_060928.1 CM039037.1 97.26 True relocation, inconsistency = -982942 51098044 51099087 53279841 53280884 NC_060928.1 CM039037.1 98.06 True local misassembly 51099978 51100647 53281360 53282029 NC_060928.1 CM039037.1 96.42 True fake: not a misassembly (possible transposable element) 50975252 50976258 53282287 53283294 NC_060928.1 CM039037.1 97.02 True fake: not a misassembly (possible transposable element) 51102685 51104998 53283731 53286002 NC_060928.1 CM039037.1 95.72 True relocation, inconsistency = 476102 51581101 51581675 53286003 53286577 NC_060928.1 CM039037.1 97.74 True relocation, inconsistency = -249043 51332633 51335336 53286578 53289322 NC_060928.1 CM039037.1 95.52 True relocation, inconsistency = 276985 51615985 51616668 53292986 53293669 NC_060928.1 CM039037.1 97.21 True relocation, inconsistency = 278581 51895250 51896746 53293670 53295166 NC_060928.1 CM039037.1 96.13 True local misassembly 51897825 51898714 53296118 53297007 NC_060928.1 CM039037.1 97.3 True relocation, inconsistency = -1384410 50514693 50515239 53297396 53297942 NC_060928.1 CM039037.1 97.62 True indel: indel (> 5bp) 50515354 50516157 53298100 53298903 NC_060928.1 CM039037.1 97.01 True local misassembly 50516652 50517590 53298904 53299842 NC_060928.1 CM039037.1 96.38 True relocation, inconsistency = 356170 50874247 50875057 53300329 53301139 NC_060928.1 CM039037.1 97.41 True local misassembly 50877661 50878262 53303791 53304392 NC_060928.1 CM039037.1 97.34 True indel: indel (> 5bp) 50878305 50879104 53304393 53305192 NC_060928.1 CM039037.1 98.62 True indel: indel (<= 5bp) 50879106 50879662 53305193 53305749 NC_060928.1 CM039037.1 97.49 True relocation, inconsistency = 771287 51651024 51652132 53305824 53306932 NC_060928.1 CM039037.1 97.11 True local misassembly 51652535 51653057 53307671 53308193 NC_060928.1 CM039037.1 95.55 True relocation, inconsistency = -450339 51202719 51203429 53308194 53308904 NC_060928.1 CM039037.1 97.19 True indel: indel (> 5bp) 51203430 51204084 53308947 53309601 NC_060928.1 CM039037.1 98.63 True indel: indel (<= 5bp) 51204085 51205116 53309603 53310634 NC_060928.1 CM039037.1 98.06 True relocation, inconsistency = 450583 51655864 51656648 53310799 53311583 NC_060928.1 CM039037.1 97.32 True relocation, inconsistency = -678465 50979229 50979742 53312629 53313142 NC_060928.1 CM039037.1 97.31 True relocation, inconsistency = 1131492 52111235 52112696 53313143 53314604 NC_060928.1 CM039037.1 97.61 True relocation, inconsistency = -1024271 51089435 51089981 53315614 53316160 NC_060928.1 CM039037.1 96.89 True local misassembly 51091250 51092476 53317478 53318704 NC_060928.1 CM039037.1 96.17 True local misassembly 51093823 51094826 53319925 53320928 NC_060928.1 CM039037.1 97.84 True relocation, inconsistency = 3786301 54881128 54884129 53320929 53323883 NC_060928.1 CM039037.1 95.7 True relocation, inconsistency = 54693 54940487 54942000 53325548 53327061 NC_060928.1 CM039037.1 97.75 True relocation, inconsistency = -2863718 52079780 52080367 53328559 53329146 NC_060928.1 CM039037.1 95.58 True indel: indel (> 5bp) 52080368 52081566 53329189 53330387 NC_060928.1 CM039037.1 98.0 True relocation, inconsistency = -1591848 50489743 50490391 53330412 53331061 NC_060928.1 CM039037.1 97.85 True relocation, inconsistency = 53525 50545616 50546314 53332761 53333459 NC_060928.1 CM039037.1 97.0 True relocation, inconsistency = 4336681 54885230 54886002 53335694 53336469 NC_060928.1 CM039037.1 97.04 True relocation, inconsistency = -2782256 52113923 52115425 53346646 53348148 NC_060928.1 CM039037.1 97.07 True local misassembly 52116181 52116761 53348946 53349526 NC_060928.1 CM039037.1 96.9 True indel: indel (<= 5bp) 52116763 52117277 53349527 53350041 NC_060928.1 CM039037.1 95.92 True local misassembly 52120834 52126119 53353426 53358713 NC_060928.1 CM039037.1 98.18 True relocation, inconsistency = 2881558 55007678 55013591 53358714 53364626 NC_060928.1 CM039037.1 98.16 True fake: not a misassembly (possible transposable element) 55049808 55052579 53364627 53367394 NC_060928.1 CM039037.1 98.11 True fake: not a misassembly (possible transposable element) 55017472 55018018 53368670 53369216 NC_060928.1 CM039037.1 99.27 True relocation, inconsistency = 36216 55054317 55081097 53369299 53396037 NC_060928.1 CM039037.1 97.88 True relocation, inconsistency = -30429 55056722 55071289 53402091 53416634 NC_060928.1 CM039037.1 97.84 True relocation, inconsistency = -17857 55053433 55120773 53416635 53483860 NC_060928.1 CM039037.1 97.8 True local misassembly 55115672 55117403 53483861 53486252 NC_060928.1 CM039037.1 96.81 True relocation, inconsistency = -63778 55053626 55058534 53486253 53491152 NC_060928.1 CM039037.1 97.89 True local misassembly 55053433 55120773 53491153 53558378 NC_060928.1 CM039037.1 97.89 True relocation, inconsistency = -66329 55054445 55117487 53558379 53621316 NC_060928.1 CM039037.1 97.98 True relocation, inconsistency = -63778 55053710 55120207 53621317 53687703 NC_060928.1 CM039037.1 97.94 True relocation, inconsistency = 29259 55151530 55153540 53689767 53691773 NC_060928.1 CM039037.1 98.06 True relocation, inconsistency = -156640 54997169 54998759 53692042 53693628 NC_060928.1 CM039037.1 97.49 True local misassembly 54999552 55001143 53694077 53695663 NC_060928.1 CM039037.1 97.55 True local misassembly 55001935 55003456 53696112 53697628 NC_060928.1 CM039037.1 97.63 True local misassembly 55004318 55005839 53698659 53700174 NC_060928.1 CM039037.1 97.57 True local misassembly 55006701 55008222 53701205 53702721 NC_060928.1 CM039037.1 97.17 True relocation, inconsistency = 98812 55112219 55113337 53707906 53709024 NC_060928.1 CM039037.1 98.26 True relocation, inconsistency = -99482 55013856 55023376 53709025 53718546 NC_060928.1 CM039037.1 98.09 True relocation, inconsistency = 100167 55123556 55146608 53718559 53741600 NC_060928.1 CM039037.1 98.52 True relocation, inconsistency = -111225 55035401 55038845 53741618 53745061 NC_060928.1 CM039037.1 99.18 True relocation, inconsistency = -24994 55013852 55020097 53745062 53751304 NC_060928.1 CM039037.1 98.32 True relocation, inconsistency = 33662 55053765 55087742 53751310 53785281 NC_060928.1 CM039037.1 98.64 True relocation, inconsistency = 14794 55102537 55108106 53785282 53790848 NC_060928.1 CM039037.1 98.94 True local misassembly 55112701 55141154 53790849 53819126 NC_060928.1 CM039037.1 98.07 True relocation, inconsistency = -36399 55104756 55119138 53819127 53833495 NC_060928.1 CM039037.1 98.37 True relocation, inconsistency = -29254 55089885 55119393 53833496 53863003 NC_060928.1 CM039037.1 98.77 True relocation, inconsistency = -60547 55059004 55066480 53863161 53870638 NC_060928.1 CM039037.1 98.7 True relocation, inconsistency = 60209 55126865 55129948 53870814 53873894 NC_060928.1 CM039037.1 97.76 True indel: stretch of mismatches 55130206 55132499 53874152 53876441 NC_060928.1 CM039037.1 97.47 True indel: stretch of mismatches 55132757 55134700 53876699 53878638 NC_060928.1 CM039037.1 97.94 True relocation, inconsistency = -60208 55075100 55077436 53879246 53881578 NC_060928.1 CM039037.1 97.26 True indel: stretch of mismatches 55077651 55079987 53881793 53884125 NC_060928.1 CM039037.1 97.22 True indel: stretch of mismatches 55080202 55082538 53884340 53886672 NC_060928.1 CM039037.1 97.22 True indel: stretch of mismatches 55082753 55085089 53886887 53889219 NC_060928.1 CM039037.1 97.26 True indel: stretch of mismatches 55085304 55087640 53889434 53891766 NC_060928.1 CM039037.1 97.39 True indel: stretch of mismatches 55087855 55090409 53891981 53894529 NC_060928.1 CM039037.1 96.91 True relocation, inconsistency = 30788 55121198 55122295 53894530 53895627 NC_060928.1 CM039037.1 97.22 True indel: stretch of mismatches 55122553 55124889 53895885 53898217 NC_060928.1 CM039037.1 97.77 True indel: stretch of mismatches 55125104 55127397 53898432 53900721 NC_060928.1 CM039037.1 97.69 True local misassembly 55132775 55135093 53900997 53903310 NC_060928.1 CM039037.1 97.5 True relocation, inconsistency = -111221 55024105 55026423 53903543 53905857 NC_060928.1 CM039037.1 97.8 True indel: indel (<= 5bp) 55026637 55028973 53906072 53908404 NC_060928.1 CM039037.1 97.65 True indel: indel (<= 5bp) 55029187 55031522 53908619 53910951 NC_060928.1 CM039037.1 97.48 True indel: stretch of mismatches 55031737 55034073 53911166 53913498 NC_060928.1 CM039037.1 97.82 True relocation, inconsistency = 160240 55194457 55195083 53913642 53914268 NC_060928.1 CM039037.1 97.61 True relocation, inconsistency = 81980 55279450 55292543 53916655 53929749 NC_060928.1 CM039037.1 98.8 True local misassembly 55293434 55300268 53930648 53937481 NC_060928.1 CM039037.1 99.31 True indel: stretch of mismatches 55300399 55520181 53937612 54157383 NC_060928.1 CM039037.1 99.82 True indel: indel (> 5bp) 55520289 59234232 54157476 57875673 NC_060928.1 CM039037.1 99.68 True local misassembly 59234231 60364588 57879906 59010251 NC_060928.1 CM039037.1 99.79 True local misassembly 60367776 62254001 59010252 60898367 NC_060928.1 CM039037.1 99.75 True local misassembly 62254276 62367982 60898460 61012560 NC_060928.1 CM039037.1 99.35 True local misassembly 62368193 63867644 61012561 62519462 NC_060928.1 CM039037.1 99.24 True local misassembly 63867924 66705641 62519570 65361379 NC_060928.1 CM039037.1 99.48 True relocation, inconsistency = 20227 66725869 67265587 65361380 65900722 NC_060928.1 CM039037.1 99.78 True relocation, inconsistency = 20026 67286814 67592864 65901923 66207074 NC_060928.1 CM039037.1 99.43 True indel: indel (> 5bp) 67593035 68271307 66207201 66886750 NC_060928.1 CM039037.1 99.55 True local misassembly 68271838 68305616 66886957 66920824 NC_060928.1 CM039037.1 99.48 True indel: indel (> 5bp) 68305718 69374890 66920860 67990479 NC_060928.1 CM039037.1 99.76 True local misassembly 69379165 69385430 67990832 67997067 NC_060928.1 CM039037.1 99.44 True local misassembly 69386936 72627421 67997068 71239062 NC_060928.1 CM039037.1 99.74 True indel: indel (> 5bp) 72627683 72704920 71239318 71316509 NC_060928.1 CM039037.1 99.42 True fake: not a misassembly (possible transposable element) 72669985 72673854 71320468 71316599 NC_060928.1 CM039037.1 95.77 True fake: not a misassembly (possible transposable element) 72709359 72709914 71320469 71321024 NC_060928.1 CM039037.1 96.66 True indel: indel (> 5bp) 72710284 72710936 71321442 71322094 NC_060928.1 CM039037.1 95.87 True local misassembly 72714124 72715834 71325260 71326970 NC_060928.1 CM039037.1 96.14 True relocation, inconsistency = 50474 72661069 72663165 71329551 71327455 NC_060928.1 CM039037.1 95.24 True local misassembly 72658659 72659282 71331974 71331351 NC_060928.1 CM039037.1 96.96 True indel: stretch of mismatches 72640001 72658533 71350648 71332100 NC_060928.1 CM039037.1 95.26 True local misassembly 72626710 72630363 71357539 71353892 NC_060928.1 CM039037.1 96.29 True local misassembly 72619877 72623734 71364369 71360514 NC_060928.1 CM039037.1 95.21 True local misassembly 72614711 72615611 71369521 71368621 NC_060928.1 CM039037.1 96.34 True inversion 72600801 72604891 71380218 71384324 NC_060928.1 CM039037.1 95.12 True local misassembly 72606470 72607083 71385922 71386535 NC_060928.1 CM039037.1 98.86 True local misassembly 72608261 72608935 71387711 71388385 NC_060928.1 CM039037.1 96.0 True local misassembly 72611533 72612033 71391017 71391517 NC_060928.1 CM039037.1 96.01 True local misassembly 72614197 72614709 71393668 71394180 NC_060928.1 CM039037.1 96.49 True indel: indel (<= 5bp) 72614711 72615569 71394181 71395039 NC_060928.1 CM039037.1 97.44 True relocation, inconsistency = 63881 72683969 72684639 71399558 71400228 NC_060928.1 CM039037.1 96.87 True indel: indel (> 5bp) 72684649 72685558 71400229 71401138 NC_060928.1 CM039037.1 97.03 True indel: stretch of mismatches 72685731 72686309 71401311 71401889 NC_060928.1 CM039037.1 97.24 True indel: indel (<= 5bp) 72686737 72687424 71402315 71403002 NC_060928.1 CM039037.1 95.2 True indel: indel (<= 5bp) 72687426 72688041 71403003 71403618 NC_060928.1 CM039037.1 96.75 True indel: indel (<= 5bp) 72688043 72688940 71403619 71404516 NC_060928.1 CM039037.1 96.55 True local misassembly 72690178 72691439 71409123 71410384 NC_060928.1 CM039037.1 96.35 True local misassembly 72691950 72692534 71410893 71411477 NC_060928.1 CM039037.1 98.46 True indel: indel (> 5bp) 72692794 72693662 71411749 71412617 NC_060928.1 CM039037.1 95.97 True indel: indel (> 5bp) 72693981 72694842 71412929 71413790 NC_060928.1 CM039037.1 96.64 True local misassembly 72695642 72696208 71414586 71415152 NC_060928.1 CM039037.1 96.3 True local misassembly 72700009 73670138 71420210 72390158 NC_060928.1 CM039037.1 99.77 True indel: stretch of mismatches 73670139 77904140 72390159 76624277 NC_060928.1 CM039037.1 99.84 True local misassembly 77907689 77908475 76627147 76627937 NC_060928.1 CM039037.1 97.35 True local misassembly 77908818 79196978 76628586 77918137 NC_060928.1 CM039037.1 99.7 True indel: indel (<= 5bp) 79197002 83277655 77918163 81998564 NC_060928.1 CM039037.1 99.79 True indel: stretch of mismatches 83277656 90555727 81998565 89283628 NC_060928.1 CM039037.1 99.72 True indel: indel (> 5bp) 90555874 91252482 89283705 89982569 NC_060928.1 CM039037.1 99.25 True inversion 91252483 91264032 89994110 89982570 NC_060928.1 CM039037.1 99.33 True inversion 91264035 92308000 89994111 91032969 NC_060928.1 CM039037.1 99.38 True indel: indel (> 5bp) 92308058 94335848 91033046 93060793 NC_060928.1 CM039037.1 99.77 True local misassembly 94335848 95766174 93065076 94495155 NC_060928.1 CM039037.1 99.86 True local misassembly 95766174 102210899 94495907 100945887 NC_060928.1 CM039037.1 99.73 True local misassembly 102207588 103494050 100945888 102232257 NC_060928.1 CM039037.1 99.88 True indel: indel (<= 5bp) 103494304 105722941 102232513 104462738 NC_060928.1 CM039037.1 99.77 True local misassembly 105724251 109827453 104463826 108562535 NC_060928.1 CM039037.1 99.6 True local misassembly 109827288 111712137 108563153 110449576 NC_060928.1 CM039037.1 99.39 True local misassembly 111712613 113055310 110449849 111792287 NC_060928.1 CM039037.1 99.92 True indel: indel (> 5bp) 113055305 114876345 111792303 113613859 NC_060928.1 CM039037.1 99.77 True indel: indel (> 5bp) 114876572 115203274 113614076 113934602 NC_060928.1 CM039037.1 97.79 True fake: not a misassembly (possible transposable element) 130956940 130959078 113936741 113934603 NC_060928.1 CM039037.1 97.39 True fake: not a misassembly (possible transposable element) 115205410 117823247 113936742 116560321 NC_060928.1 CM039037.1 99.38 True local misassembly 117824182 117842081 116561072 116578910 NC_060928.1 CM039037.1 99.31 True local misassembly 117842234 124669807 116579220 123411093 NC_060928.1 CM039037.1 99.64 True indel: indel (> 5bp) 124669914 126020704 123411188 124762082 NC_060928.1 CM039037.1 99.82 True indel: indel (> 5bp) 126020849 129403165 124762175 128145587 NC_060928.1 CM039037.1 99.76 True local misassembly 129403547 132525967 128145801 131266211 NC_060928.1 CM039037.1 99.81 True local misassembly 132525881 133714670 131266397 132455398 NC_060928.1 CM039037.1 99.78 True indel: indel (> 5bp) 133714754 135066391 132455470 133807420 NC_060928.1 CM039037.1 99.7 True relocation, inconsistency = 22385 135088777 135940862 133807421 134659528 NC_060928.1 CM039037.1 99.81 True local misassembly 135940429 137834266 134660759 136554865 NC_060928.1 CM039037.1 99.72 True local misassembly 137834221 137967617 136554991 136685235 NC_060928.1 CM039037.1 97.41 True local misassembly 137967976 147056993 136685478 145777172 NC_060928.1 CM039037.1 99.78 True local misassembly 147057049 151816650 145777392 150529786 NC_060928.1 CM039037.1 99.67 True indel: indel (> 5bp) 151816822 153572758 150529908 152287949 NC_060928.1 CM039037.1 99.76 True local misassembly 153574889 154743445 152288887 153457891 NC_060928.1 CM039037.1 99.75 True local misassembly 154743429 156453313 153458710 155164708 NC_060928.1 CM039037.1 99.55 True indel: indel (> 5bp) 156453713 159359368 155165097 158070181 NC_060928.1 CM039037.1 99.72 True indel: indel (> 5bp) 159359501 161609055 158070271 160315635 NC_060928.1 CM039037.1 99.48 True indel: indel (> 5bp) 161609167 161705100 160315736 160411667 NC_060928.1 CM039037.1 99.9 True relocation, inconsistency = 17204 161722305 161723932 160413295 160411668 NC_060928.1 CM039037.1 99.94 True relocation, inconsistency = -1241788 161715140 162964061 160413327 161661766 NC_060928.1 CM039037.1 99.84 True indel: indel (<= 5bp) 162964237 164482355 161661940 163174344 NC_060928.1 CM039037.1 99.35 True local misassembly 164482766 165340511 163174488 164034868 NC_060928.1 CM039037.1 99.5 True indel: indel (> 5bp) 165340567 168461374 164034948 167155406 NC_060928.1 CM039037.1 99.73 True local misassembly 168462310 170809689 167155407 169497265 NC_060928.1 CM039037.1 99.44 True local misassembly 170809808 171514414 169497576 170201997 NC_060928.1 CM039037.1 99.8 True local misassembly 171514972 179590367 170202551 178290767 NC_060928.1 CM039037.1 99.54 True local misassembly 179590605 179639362 178291656 178340410 NC_060928.1 CM039037.1 99.85 True indel: indel (> 5bp) 179639443 182472408 178340541 181173839 NC_060928.1 CM039037.1 99.74 True local misassembly 182472424 183586869 181176213 182290402 NC_060928.1 CM039037.1 99.51 True indel: indel (> 5bp) 183586999 185570174 182290544 184275116 NC_060928.1 CM039037.1 99.6 True local misassembly 185570216 186176362 184275274 184881053 NC_060928.1 CM039037.1 99.61 True local misassembly 186177748 190271556 184881565 188976847 NC_060928.1 CM039037.1 99.49 True indel: indel (<= 5bp) 190271655 191850889 188976944 190557986 NC_060928.1 CM039037.1 99.0 True local misassembly 191854839 191855620 190559465 190560246 NC_060928.1 CM039037.1 95.78 True local misassembly 191859246 192291864 190562778 190994940 NC_060928.1 CM039037.1 99.19 True indel: indel (> 5bp) 192291931 192296485 190994995 190999549 NC_060928.1 CM039037.1 99.89 True indel: indel (> 5bp) 192296492 192302065 190999550 191005123 NC_060928.1 CM039037.1 99.89 True indel: indel (<= 5bp) 192302066 192304093 191005125 191007152 NC_060928.1 CM039037.1 99.46 True indel: indel (<= 5bp) 192304094 192305995 191007156 191009057 NC_060928.1 CM039037.1 99.26 True indel: indel (<= 5bp) 192305997 192306847 191009058 191009908 NC_060928.1 CM039037.1 99.65 True indel: indel (<= 5bp) 192306851 192308900 191009909 191011958 NC_060928.1 CM039037.1 99.76 True indel: indel (<= 5bp) 192308901 192310051 191011964 191013114 NC_060928.1 CM039037.1 99.83 True local misassembly 192310193 192310834 191013115 191013756 NC_060928.1 CM039037.1 99.84 True indel: indel (<= 5bp) 192310836 192312378 191013757 191015299 NC_060928.1 CM039037.1 99.94 True indel: indel (<= 5bp) 192312379 192315470 191015301 191018392 NC_060928.1 CM039037.1 99.87 True indel: indel (> 5bp) 192315967 192320869 191018813 191023715 NC_060928.1 CM039037.1 99.65 True indel: indel (<= 5bp) 192320870 192321777 191023720 191024627 NC_060928.1 CM039037.1 99.67 True indel: indel (<= 5bp) 192322073 192325423 191024919 191028269 NC_060928.1 CM039037.1 99.73 True indel: indel (<= 5bp) 192325426 192327533 191028270 191030377 NC_060928.1 CM039037.1 99.81 True local misassembly 192333685 192335559 191030824 191032698 NC_060928.1 CM039037.1 99.68 True local misassembly 192335646 192348479 191032699 191045532 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192348480 192365046 191045537 191062103 NC_060928.1 CM039037.1 99.93 True indel: indel (<= 5bp) 192365047 192369649 191062105 191066707 NC_060928.1 CM039037.1 99.7 True local misassembly 192370031 192391285 191066927 191088181 NC_060928.1 CM039037.1 99.94 True indel: indel (<= 5bp) 192391288 192394592 191088182 191091486 NC_060928.1 CM039037.1 99.67 True indel: indel (<= 5bp) 192394595 192396323 191091487 191093215 NC_060928.1 CM039037.1 99.83 True indel: indel (<= 5bp) 192396326 192400395 191093216 191097285 NC_060928.1 CM039037.1 99.61 True indel: indel (<= 5bp) 192400396 192402940 191097289 191099833 NC_060928.1 CM039037.1 99.88 True indel: stretch of mismatches 192403333 192406454 191100226 191103347 NC_060928.1 CM039037.1 99.87 True indel: indel (<= 5bp) 192406508 192411422 191103405 191108319 NC_060928.1 CM039037.1 99.78 True local misassembly 192412389 192416221 191111257 191115089 NC_060928.1 CM039037.1 99.69 True indel: indel (<= 5bp) 192416223 192426395 191115090 191125262 NC_060928.1 CM039037.1 99.86 True indel: indel (<= 5bp) 192426396 192430155 191125264 191129023 NC_060928.1 CM039037.1 99.81 True indel: indel (<= 5bp) 192430158 192432298 191129024 191131164 NC_060928.1 CM039037.1 99.95 True indel: indel (<= 5bp) 192432302 192465573 191131165 191164436 NC_060928.1 CM039037.1 99.99 True local misassembly 192465574 192474616 191164563 191173605 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192474618 192475833 191173606 191174821 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192475836 192482935 191174822 191181921 NC_060928.1 CM039037.1 99.97 True indel: indel (<= 5bp) 192482937 192483801 191181922 191182786 NC_060928.1 CM039037.1 99.42 True indel: indel (<= 5bp) 192483802 192487703 191182788 191186689 NC_060928.1 CM039037.1 99.56 True indel: indel (<= 5bp) 192487705 192488778 191186690 191187763 NC_060928.1 CM039037.1 99.63 True indel: stretch of mismatches 192489049 192489935 191188034 191188920 NC_060928.1 CM039037.1 99.32 True local misassembly 192490421 192492135 191189485 191191199 NC_060928.1 CM039037.1 99.3 True indel: indel (<= 5bp) 192492138 192500039 191191200 191199101 NC_060928.1 CM039037.1 99.68 True indel: indel (<= 5bp) 192500040 192502801 191199104 191201865 NC_060928.1 CM039037.1 99.67 True indel: indel (<= 5bp) 192502806 192503752 191201866 191202812 NC_060928.1 CM039037.1 99.26 True indel: indel (<= 5bp) 192503757 192505652 191202813 191204708 NC_060928.1 CM039037.1 99.79 True indel: indel (> 5bp) 192505659 192509249 191204709 191208299 NC_060928.1 CM039037.1 99.86 True indel: indel (> 5bp) 192509250 192509771 191208340 191208861 NC_060928.1 CM039037.1 98.47 True indel: indel (<= 5bp) 192509772 192516942 191208863 191216033 NC_060928.1 CM039037.1 99.89 True indel: indel (> 5bp) 192516951 192523569 191216034 191222652 NC_060928.1 CM039037.1 99.94 True indel: indel (> 5bp) 192523576 192526736 191222653 191225813 NC_060928.1 CM039037.1 99.84 True indel: indel (<= 5bp) 192526740 192529726 191225814 191228800 NC_060928.1 CM039037.1 99.9 True indel: indel (<= 5bp) 192529727 192542123 191228805 191241201 NC_060928.1 CM039037.1 99.99 True indel: indel (<= 5bp) 192542124 192546094 191241203 191245173 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192546096 192549488 191245174 191248566 NC_060928.1 CM039037.1 99.91 True indel: indel (<= 5bp) 192549489 192560572 191248568 191259651 NC_060928.1 CM039037.1 99.98 True indel: indel (<= 5bp) 192560573 192582699 191259653 191281779 NC_060928.1 CM039037.1 99.99 True indel: indel (> 5bp) 192582700 192586099 191281799 191285198 NC_060928.1 CM039037.1 99.71 True local misassembly 192591244 192593379 191286532 191288667 NC_060928.1 CM039037.1 99.81 True indel: indel (<= 5bp) 192593380 192596839 191288670 191292129 NC_060928.1 CM039037.1 99.88 True indel: indel (<= 5bp) 192596841 192598841 191292130 191294130 NC_060928.1 CM039037.1 99.9 True indel: indel (<= 5bp) 192598845 192603082 191294131 191298368 NC_060928.1 CM039037.1 99.86 True indel: indel (> 5bp) 192603091 192603891 191298369 191299169 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192603893 192608084 191299170 191303361 NC_060928.1 CM039037.1 99.83 True indel: indel (<= 5bp) 192608087 192613471 191303362 191308746 NC_060928.1 CM039037.1 99.85 True indel: indel (<= 5bp) 192613474 192615036 191308747 191310309 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192615038 192619785 191310310 191315057 NC_060928.1 CM039037.1 99.85 True indel: indel (<= 5bp) 192619791 192620696 191315058 191315963 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 192620698 192622521 191315964 191317787 NC_060928.1 CM039037.1 99.84 True indel: indel (<= 5bp) 192622522 192624619 191317792 191319889 NC_060928.1 CM039037.1 99.62 True indel: indel (> 5bp) 192624641 192626363 191319890 191321612 NC_060928.1 CM039037.1 99.94 True relocation, inconsistency = 8854 192635218 192638927 191321613 191325322 NC_060928.1 CM039037.1 99.76 True indel: indel (<= 5bp) 192638928 192644853 191325325 191331250 NC_060928.1 CM039037.1 99.88 True indel: indel (> 5bp) 192644860 192646542 191331251 191332933 NC_060928.1 CM039037.1 99.7 True indel: indel (> 5bp) 192646886 192648901 191333261 191335276 NC_060928.1 CM039037.1 99.9 True indel: indel (<= 5bp) 192648904 192656187 191335277 191342560 NC_060928.1 CM039037.1 99.7 True indel: indel (<= 5bp) 192656188 192659118 191342562 191345492 NC_060928.1 CM039037.1 99.83 True indel: indel (<= 5bp) 192659122 192663391 191345493 191349762 NC_060928.1 CM039037.1 99.77 True local misassembly 192666258 192667190 191350949 191351881 NC_060928.1 CM039037.1 99.36 True indel: indel (<= 5bp) 192667192 192671130 191351882 191355820 NC_060928.1 CM039037.1 99.75 True local misassembly 192671785 193009807 191357387 191695541 NC_060928.1 CM039037.1 99.61 True local misassembly 193013472 193015500 191697556 191699584 NC_060928.1 CM039037.1 99.16 True indel: indel (> 5bp) 193015853 193016672 191699922 191700741 NC_060928.1 CM039037.1 98.9 True indel: indel (<= 5bp) 193016673 193026763 191700746 191710836 NC_060928.1 CM039037.1 99.73 True indel: indel (<= 5bp) 193026764 193027370 191710838 191711444 NC_060928.1 CM039037.1 100.0 True indel: indel (> 5bp) 193027377 193035463 191711445 191719531 NC_060928.1 CM039037.1 99.99 True indel: indel (<= 5bp) 193035465 193040310 191719532 191724377 NC_060928.1 CM039037.1 99.81 True indel: indel (<= 5bp) 193040311 193041300 191724379 191725368 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 193041306 193042009 191725369 191726072 NC_060928.1 CM039037.1 100.0 True indel: indel (> 5bp) 193042010 193046551 191726103 191730644 NC_060928.1 CM039037.1 99.8 True local misassembly 193048748 193171586 191735287 191857824 NC_060928.1 CM039037.1 98.85 True local misassembly 193172449 193178426 191858555 191864532 NC_060928.1 CM039037.1 99.83 True indel: indel (<= 5bp) 193178427 193180504 191864534 191866611 NC_060928.1 CM039037.1 99.9 True indel: indel (<= 5bp) 193180507 193181725 191866612 191867830 NC_060928.1 CM039037.1 99.84 True local misassembly 193181726 193186657 191868173 191873104 NC_060928.1 CM039037.1 100.0 True indel: indel (<= 5bp) 193186660 193196826 191873105 191883271 NC_060928.1 CM039037.1 99.84 True local misassembly 193197381 193199435 191887501 191889555 NC_060928.1 CM039037.1 100.0 True indel: indel (> 5bp) 193199516 193202966 191889556 191893006 NC_060928.1 CM039037.1 99.74 True indel: indel (<= 5bp) 193202967 193206050 191893008 191896091 NC_060928.1 CM039037.1 99.64 True local misassembly 193208422 193210157 191902367 191904102 NC_060928.1 CM039037.1 99.08 True local misassembly 193211402 193346206 191905464 192038055 NC_060928.1 CM039037.1 97.82 True local misassembly 193348359 193520750 192040830 192213169 NC_060928.1 CM039037.1 99.44 True translocation 28042 33776 192218898 192213170 NC_060946.1 CM039037.1 99.55 True translocation 3241 26763 192242437 192218899 NC_060939.1 CM039037.1 99.5 True translocation 201104816 201105729 192246492 192247405 NC_060927.1 CM039037.1 100.0 True CONTIG CM039037.1 192250309 misassembled 2294 156223 10810 167253 NC_060929.1 CM039038.1 97.25 True local misassembly 158240 159146 169232 170138 NC_060929.1 CM039038.1 99.56 True indel: indel (<= 5bp) 159148 160570 170139 171561 NC_060929.1 CM039038.1 99.93 True indel: indel (<= 5bp) 160571 167375 171565 178369 NC_060929.1 CM039038.1 99.59 True local misassembly 167637 175327 178918 186608 NC_060929.1 CM039038.1 99.86 True indel: indel (<= 5bp) 175332 176162 186609 187439 NC_060929.1 CM039038.1 99.28 True indel: indel (<= 5bp) 176163 179932 187445 191214 NC_060929.1 CM039038.1 99.66 True indel: indel (<= 5bp) 179933 181698 191217 192982 NC_060929.1 CM039038.1 99.77 True indel: indel (<= 5bp) 181701 185502 192983 196784 NC_060929.1 CM039038.1 99.87 True local misassembly 185603 188233 196785 199415 NC_060929.1 CM039038.1 99.81 True indel: indel (> 5bp) 188339 192217 199511 203389 NC_060929.1 CM039038.1 99.72 True indel: indel (> 5bp) 192294 197554 203390 208650 NC_060929.1 CM039038.1 99.66 True indel: indel (> 5bp) 197555 200320 208680 211445 NC_060929.1 CM039038.1 99.82 True local misassembly 200466 201024 213130 213688 NC_060929.1 CM039038.1 100.0 True indel: indel (<= 5bp) 201025 202482 213690 215147 NC_060929.1 CM039038.1 99.38 True local misassembly 203019 203708 215148 215837 NC_060929.1 CM039038.1 99.42 True local misassembly 204831 206322 216338 217829 NC_060929.1 CM039038.1 99.66 True indel: indel (<= 5bp) 206324 207008 217830 218514 NC_060929.1 CM039038.1 99.71 True indel: indel (<= 5bp) 207108 209309 218611 220812 NC_060929.1 CM039038.1 99.55 True indel: indel (<= 5bp) 209310 210324 220814 221828 NC_060929.1 CM039038.1 99.61 True indel: indel (<= 5bp) 210325 210930 221831 222436 NC_060929.1 CM039038.1 99.83 True local misassembly 211859 212687 223374 224202 NC_060929.1 CM039038.1 99.76 True indel: indel (<= 5bp) 212688 213393 224204 224909 NC_060929.1 CM039038.1 99.29 True indel: indel (<= 5bp) 213394 214837 224912 226355 NC_060929.1 CM039038.1 99.45 True indel: indel (<= 5bp) 215034 216256 226547 227769 NC_060929.1 CM039038.1 99.18 True indel: indel (<= 5bp) 216257 217971 227771 229485 NC_060929.1 CM039038.1 99.42 True indel: indel (<= 5bp) 217973 219206 229486 230719 NC_060929.1 CM039038.1 98.38 True indel: stretch of mismatches 219642 220157 231155 231670 NC_060929.1 CM039038.1 99.61 True indel: indel (<= 5bp) 220158 220863 231673 232378 NC_060929.1 CM039038.1 99.29 True local misassembly 221678 222391 233144 233857 NC_060929.1 CM039038.1 98.74 True local misassembly 223075 225477 234527 236929 NC_060929.1 CM039038.1 99.38 True indel: indel (<= 5bp) 225606 228169 237060 239623 NC_060929.1 CM039038.1 99.38 True indel: indel (> 5bp) 228283 229488 239721 240926 NC_060929.1 CM039038.1 98.18 True indel: indel (<= 5bp) 229489 230132 240928 241571 NC_060929.1 CM039038.1 98.76 True local misassembly 230817 234395 242305 245883 NC_060929.1 CM039038.1 99.16 True indel: indel (<= 5bp) 234397 238015 245884 249502 NC_060929.1 CM039038.1 98.84 True indel: indel (<= 5bp) 238016 239038 249507 250529 NC_060929.1 CM039038.1 99.61 True indel: indel (<= 5bp) 239039 242631 250535 254127 NC_060929.1 CM039038.1 99.39 True indel: indel (<= 5bp) 242633 243294 254128 254789 NC_060929.1 CM039038.1 98.79 True local misassembly 243832 244629 255763 256560 NC_060929.1 CM039038.1 99.62 True indel: indel (<= 5bp) 244631 246147 256561 258077 NC_060929.1 CM039038.1 99.14 True local misassembly 246499 247865 258557 259923 NC_060929.1 CM039038.1 99.49 True local misassembly 252568 253876 261690 262998 NC_060929.1 CM039038.1 99.54 True indel: indel (<= 5bp) 253877 254551 263001 263675 NC_060929.1 CM039038.1 98.96 True indel: indel (<= 5bp) 254552 255845 263677 264970 NC_060929.1 CM039038.1 99.07 True indel: indel (> 5bp) 256065 256844 265121 265900 NC_060929.1 CM039038.1 99.23 True local misassembly 256845 258213 267688 269056 NC_060929.1 CM039038.1 99.27 True indel: indel (<= 5bp) 258215 260732 269057 271574 NC_060929.1 CM039038.1 99.76 True indel: indel (<= 5bp) 261054 261769 271893 272608 NC_060929.1 CM039038.1 99.86 True indel: indel (> 5bp) 261782 263720 272609 274547 NC_060929.1 CM039038.1 99.59 True indel: indel (<= 5bp) 263966 267327 274790 278151 NC_060929.1 CM039038.1 99.52 True indel: indel (<= 5bp) 267328 267936 278153 278761 NC_060929.1 CM039038.1 99.84 True indel: indel (<= 5bp) 267938 269230 278762 280054 NC_060929.1 CM039038.1 99.46 True indel: indel (<= 5bp) 269231 269808 280056 280633 NC_060929.1 CM039038.1 98.62 True indel: indel (<= 5bp) 269810 271918 280634 282742 NC_060929.1 CM039038.1 99.86 True local misassembly 271919 274661 285344 288086 NC_060929.1 CM039038.1 99.74 True indel: indel (> 5bp) 274898 276117 288278 289497 NC_060929.1 CM039038.1 99.59 True indel: indel (<= 5bp) 276118 278315 289499 291696 NC_060929.1 CM039038.1 99.73 True indel: indel (> 5bp) 278746 281573 292114 294941 NC_060929.1 CM039038.1 99.79 True indel: indel (> 5bp) 281574 284001 295009 297436 NC_060929.1 CM039038.1 99.71 True local misassembly 284002 285237 297617 298852 NC_060929.1 CM039038.1 98.3 True indel: indel (<= 5bp) 285242 288671 298853 302282 NC_060929.1 CM039038.1 99.68 True local misassembly 289149 292122 302859 305832 NC_060929.1 CM039038.1 99.39 True indel: indel (> 5bp) 292256 297295 305954 310993 NC_060929.1 CM039038.1 99.9 True indel: indel (> 5bp) 297296 299535 311072 313311 NC_060929.1 CM039038.1 99.87 True indel: indel (> 5bp) 299564 304251 313312 317999 NC_060929.1 CM039038.1 99.81 True indel: indel (> 5bp) 304262 308480 318000 322218 NC_060929.1 CM039038.1 99.88 True local misassembly 309099 312481 323036 326418 NC_060929.1 CM039038.1 99.85 True indel: indel (> 5bp) 312497 314906 326419 328828 NC_060929.1 CM039038.1 100.0 True indel: indel (> 5bp) 314913 319146 328829 333062 NC_060929.1 CM039038.1 99.95 True indel: indel (<= 5bp) 319147 321759 333065 335677 NC_060929.1 CM039038.1 99.89 True indel: indel (<= 5bp) 321760 322275 335681 336196 NC_060929.1 CM039038.1 99.81 True indel: indel (<= 5bp) 322284 323155 336200 337071 NC_060929.1 CM039038.1 99.77 True indel: indel (<= 5bp) 323157 323683 337072 337598 NC_060929.1 CM039038.1 100.0 True indel: stretch of mismatches 323823 331577 337738 345492 NC_060929.1 CM039038.1 99.87 True indel: indel (> 5bp) 331619 332461 345493 346335 NC_060929.1 CM039038.1 99.76 True indel: indel (<= 5bp) 332462 334348 346337 348223 NC_060929.1 CM039038.1 99.95 True indel: indel (> 5bp) 334386 335250 348224 349088 NC_060929.1 CM039038.1 99.65 True local misassembly 335852 626650 349305 637670 NC_060929.1 CM039038.1 97.2 True local misassembly 628863 629418 638008 638563 NC_060929.1 CM039038.1 99.1 True local misassembly 629747 630606 639086 639945 NC_060929.1 CM039038.1 98.6 True indel: indel (> 5bp) 630735 631252 640150 640667 NC_060929.1 CM039038.1 97.3 True indel: indel (> 5bp) 631292 632292 640668 641668 NC_060929.1 CM039038.1 97.7 True indel: indel (<= 5bp) 632294 633030 641669 642405 NC_060929.1 CM039038.1 99.73 True indel: indel (<= 5bp) 633032 634701 642406 644075 NC_060929.1 CM039038.1 99.76 True local misassembly 634860 640965 644076 650181 NC_060929.1 CM039038.1 99.75 True local misassembly 641169 647093 650537 656461 NC_060929.1 CM039038.1 99.8 True local misassembly 648422 687599 660474 700437 NC_060929.1 CM039038.1 97.16 True local misassembly 688045 689842 701941 703738 NC_060929.1 CM039038.1 99.61 True local misassembly 689928 690678 704504 705248 NC_060929.1 CM039038.1 96.56 True indel: indel (> 5bp) 690948 699262 705576 713888 NC_060929.1 CM039038.1 97.45 True local misassembly 700057 701409 720744 722096 NC_060929.1 CM039038.1 97.86 True local misassembly 702212 721558 723770 743168 NC_060929.1 CM039038.1 97.49 True relocation, inconsistency = 7108 728667 730130 743169 744630 NC_060929.1 CM039038.1 97.05 True local misassembly 730828 733757 745345 748274 NC_060929.1 CM039038.1 98.53 True local misassembly 734528 735319 748275 749066 NC_060929.1 CM039038.1 98.74 True local misassembly 735997 737332 749740 751075 NC_060929.1 CM039038.1 99.55 True indel: indel (<= 5bp) 737632 738213 751380 751961 NC_060929.1 CM039038.1 99.83 True indel: indel (<= 5bp) 738214 740152 751966 753904 NC_060929.1 CM039038.1 99.38 True local misassembly 740898 742526 754655 756283 NC_060929.1 CM039038.1 97.3 True indel: indel (<= 5bp) 742527 743108 756285 756866 NC_060929.1 CM039038.1 98.11 True indel: indel (<= 5bp) 743109 743779 756871 757541 NC_060929.1 CM039038.1 98.96 True indel: indel (<= 5bp) 743790 744889 757551 758650 NC_060929.1 CM039038.1 98.64 True indel: indel (> 5bp) 744890 747089 758727 760926 NC_060929.1 CM039038.1 99.23 True local misassembly 747454 751493 761107 765146 NC_060929.1 CM039038.1 99.5 True indel: indel (<= 5bp) 751495 754872 765147 768524 NC_060929.1 CM039038.1 99.59 True relocation, inconsistency = 18524 784231 786965 779359 782101 NC_060929.1 CM039038.1 98.54 True relocation, inconsistency = -111256 675787 676556 782179 782948 NC_060929.1 CM039038.1 98.96 True indel: indel (<= 5bp) 676637 679158 783026 785599 NC_060929.1 CM039038.1 95.07 True local misassembly 680636 681311 786761 787436 NC_060929.1 CM039038.1 97.19 True indel: indel (<= 5bp) 681391 682392 787513 788514 NC_060929.1 CM039038.1 96.71 True local misassembly 684135 928531 790185 1034576 NC_060929.1 CM039038.1 99.66 True local misassembly 929793 1084661 1036280 1190995 NC_060929.1 CM039038.1 96.68 True local misassembly 1087101 1097834 1190996 1201726 NC_060929.1 CM039038.1 99.68 True local misassembly 1099657 1215136 1203423 1321734 NC_060929.1 CM039038.1 96.05 True indel: indel (> 5bp) 1215368 1883625 1322050 1991563 NC_060929.1 CM039038.1 98.33 True fake: not a misassembly (possible transposable element) 142070294 142073141 1991903 1994750 NC_060927.1 CM039038.1 99.72 True fake: not a misassembly (possible transposable element) 1883628 3578872 1994751 3692200 NC_060929.1 CM039038.1 99.15 True indel: indel (> 5bp) 3579405 5744031 3692678 5852464 NC_060929.1 CM039038.1 99.53 True local misassembly 5744550 6705065 5853105 6813939 NC_060929.1 CM039038.1 99.56 True indel: indel (> 5bp) 6705369 12622735 6814295 12730085 NC_060929.1 CM039038.1 99.68 True relocation, inconsistency = -20125 12622734 12966046 12750209 13093579 NC_060929.1 CM039038.1 99.65 True indel: indel (<= 5bp) 12966080 15187916 13093616 15314792 NC_060929.1 CM039038.1 99.65 True indel: indel (<= 5bp) 15187981 15204688 15314860 15331565 NC_060929.1 CM039038.1 99.83 True indel: indel (> 5bp) 15204658 17521902 15331566 17649390 NC_060929.1 CM039038.1 99.78 True relocation, inconsistency = -58280 17493464 17551841 17707777 17649401 NC_060929.1 CM039038.1 99.47 True relocation, inconsistency = 18147 17569989 18446363 17707778 18583764 NC_060929.1 CM039038.1 99.76 True indel: indel (> 5bp) 18446472 21143953 18583849 21280836 NC_060929.1 CM039038.1 99.67 True indel: indel (> 5bp) 21144006 21458191 21280846 21588934 NC_060929.1 CM039038.1 97.59 True local misassembly 21458138 21483386 21591174 21616443 NC_060929.1 CM039038.1 99.68 True relocation, inconsistency = 80532 21563919 23577370 21616444 23631564 NC_060929.1 CM039038.1 99.77 True local misassembly 23577418 26898042 23631703 26951410 NC_060929.1 CM039038.1 99.76 True local misassembly 26898356 27531203 26951938 27579646 NC_060929.1 CM039038.1 98.98 True local misassembly 27532607 29037761 27580161 29085841 NC_060929.1 CM039038.1 99.72 True indel: indel (> 5bp) 29037966 32971321 29086019 33018850 NC_060929.1 CM039038.1 99.78 True local misassembly 32971628 34421476 33019852 34467275 NC_060929.1 CM039038.1 99.68 True relocation, inconsistency = 20452 34441929 34500856 34467276 34526167 NC_060929.1 CM039038.1 99.69 True relocation, inconsistency = 13494134 20836946 20947794 34637752 34526168 NC_060929.1 CM039038.1 97.29 True relocation, inconsistency = 13669952 34618242 35001611 34638248 35021855 NC_060929.1 CM039038.1 99.78 True indel: indel (> 5bp) 35001681 35961511 35022004 35981510 NC_060929.1 CM039038.1 99.73 True local misassembly 35961976 42884048 35982772 42897547 NC_060929.1 CM039038.1 99.73 True local misassembly 42883805 43919318 42899983 43935747 NC_060929.1 CM039038.1 99.83 True indel: indel (<= 5bp) 43919465 45625804 43935893 45642269 NC_060929.1 CM039038.1 99.95 True indel: indel (> 5bp) 45625979 46397323 45642413 46414321 NC_060929.1 CM039038.1 99.77 True local misassembly 46397332 46521578 46416093 46540740 NC_060929.1 CM039038.1 99.34 True local misassembly 46526763 46656241 46540741 46670219 NC_060929.1 CM039038.1 99.68 True local misassembly 46661525 46686347 46670220 46695046 NC_060929.1 CM039038.1 99.3 True local misassembly 46695499 46699465 46704030 46707996 NC_060929.1 CM039038.1 96.92 True indel: indel (<= 5bp) 46699467 46701705 46707997 46710235 NC_060929.1 CM039038.1 97.99 True translocation 25702051 25702784 46710236 46710969 NC_060943.1 CM039038.1 96.27 True indel: indel (<= 5bp) 25702787 25705962 46710970 46714145 NC_060943.1 CM039038.1 96.95 True indel: indel (<= 5bp) 25705964 25708166 46714146 46716348 NC_060943.1 CM039038.1 97.68 True local misassembly 25702034 25702784 46716368 46717118 NC_060943.1 CM039038.1 96.27 True indel: indel (<= 5bp) 25702787 25705962 46717119 46720294 NC_060943.1 CM039038.1 96.95 True indel: indel (<= 5bp) 25705964 25708166 46720295 46722497 NC_060943.1 CM039038.1 97.73 True translocation 46739283 46817091 46722517 46801191 NC_060929.1 CM039038.1 97.62 True local misassembly 46818690 46824537 46801878 46807725 NC_060929.1 CM039038.1 99.5 True local misassembly 46824878 46826973 46807726 46809821 NC_060929.1 CM039038.1 99.44 True relocation, inconsistency = 232877 47059851 47062055 46809822 46812026 NC_060929.1 CM039038.1 99.05 True relocation, inconsistency = -192423 46870682 46878079 46813076 46820473 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = 2686113 49588199 49588721 46844480 46845002 NC_060929.1 CM039038.1 97.71 True relocation, inconsistency = -244599 49352898 49354094 46853778 46854974 NC_060929.1 CM039038.1 97.74 True local misassembly 49364043 49365604 46868118 46869679 NC_060929.1 CM039038.1 97.57 True relocation, inconsistency = -2236918 47128687 47129278 46869680 46870270 NC_060929.1 CM039038.1 97.49 True translocation 29563497 29564269 46870271 46871043 NC_060943.1 CM039038.1 96.51 True translocation 49349100 49356078 46872538 46879519 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = 59447 49415526 49417112 46879520 46881108 NC_060929.1 CM039038.1 97.25 True relocation, inconsistency = -94436 49322677 49328020 46881109 46886455 NC_060929.1 CM039038.1 97.7 True local misassembly 49325983 49328965 46886456 46889439 NC_060929.1 CM039038.1 97.64 True relocation, inconsistency = 119235 49448201 49452290 46889440 46893531 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = -7473 49448232 49454263 46896946 46902981 NC_060929.1 CM039038.1 97.65 True local misassembly 49451550 49454263 46902982 46905699 NC_060929.1 CM039038.1 97.58 True relocation, inconsistency = -10188 49444076 49445436 46905700 46907060 NC_060929.1 CM039038.1 97.5 True relocation, inconsistency = -85943 49360593 49364950 46908160 46912517 NC_060929.1 CM039038.1 97.43 True relocation, inconsistency = 52650 49417601 49420422 46912518 46915341 NC_060929.1 CM039038.1 97.54 True relocation, inconsistency = 21741 49443417 49447552 46916595 46920730 NC_060929.1 CM039038.1 97.78 True local misassembly 49448232 49454263 46920731 46926766 NC_060929.1 CM039038.1 97.48 True relocation, inconsistency = -94772 49360593 49363309 46927868 46930584 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = 84922 49448232 49452306 46930585 46934661 NC_060929.1 CM039038.1 97.68 True local misassembly 49448232 49454263 46934662 46940697 NC_060929.1 CM039038.1 97.75 True local misassembly 49452907 49453663 46940698 46941456 NC_060929.1 CM039038.1 97.8 True local misassembly 49448232 49453617 46941457 46946846 NC_060929.1 CM039038.1 97.79 True local misassembly 49448526 49453313 46946847 46951638 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -92732 49360593 49363606 46951650 46954663 NC_060929.1 CM039038.1 97.74 True local misassembly 49360634 49363606 46954749 46957721 NC_060929.1 CM039038.1 97.55 True relocation, inconsistency = 40421 49404113 49405383 46957807 46959077 NC_060929.1 CM039038.1 97.88 True indel: stretch of mismatches 49405793 49407477 46959487 46961170 NC_060929.1 CM039038.1 98.28 True local misassembly 49405792 49407177 46961184 46962569 NC_060929.1 CM039038.1 98.49 True fake: not a misassembly (possible transposable element) 49362130 49365604 46963040 46966513 NC_060929.1 CM039038.1 97.32 True fake: not a misassembly (possible transposable element) 49406366 49407477 46966514 46967625 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = 40764 49448637 49449884 46968021 46969268 NC_060929.1 CM039038.1 98.08 True local misassembly 49449941 49451693 46969494 46971246 NC_060929.1 CM039038.1 97.95 True indel: indel (<= 5bp) 49451867 49452568 46971418 46972119 NC_060929.1 CM039038.1 96.87 True relocation, inconsistency = -92055 49360593 49363298 46972199 46974904 NC_060929.1 CM039038.1 97.6 True relocation, inconsistency = 49595 49413540 49415275 46975551 46977286 NC_060929.1 CM039038.1 97.55 True relocation, inconsistency = -10193 49405083 49410536 46977287 46982735 NC_060929.1 CM039038.1 96.99 True fake: not a misassembly (possible transposable element) 49526729 49530454 46982736 46986461 NC_060929.1 CM039038.1 97.15 True fake: not a misassembly (possible transposable element) 49413550 49420634 46987108 46994198 NC_060929.1 CM039038.1 97.34 True relocation, inconsistency = 154944 49576055 49577948 46994675 46996568 NC_060929.1 CM039038.1 98.47 True relocation, inconsistency = -131161 49448457 49451541 46998238 47001322 NC_060929.1 CM039038.1 97.96 True local misassembly 49448484 49451541 47001323 47004379 NC_060929.1 CM039038.1 97.83 True relocation, inconsistency = -48239 49404071 49404662 47005148 47005739 NC_060929.1 CM039038.1 98.31 True fake: not a misassembly (possible transposable element) 49261782 49264017 47006560 47008797 NC_060929.1 CM039038.1 97.86 True fake: not a misassembly (possible transposable element) 49406022 49407693 47008798 47010469 NC_060929.1 CM039038.1 97.86 True fake: not a misassembly (possible transposable element) 49443701 49446776 47010470 47013545 NC_060929.1 CM039038.1 97.63 True fake: not a misassembly (possible transposable element) 49406013 49407294 47013546 47014827 NC_060929.1 CM039038.1 98.46 True fake: not a misassembly (possible transposable element) 49289641 49291537 47016074 47017971 NC_060929.1 CM039038.1 97.63 True fake: not a misassembly (possible transposable element) 49406022 49407128 47017972 47019078 NC_060929.1 CM039038.1 98.38 True fake: not a misassembly (possible transposable element) 49361611 49364962 47019079 47022430 NC_060929.1 CM039038.1 97.4 True fake: not a misassembly (possible transposable element) 49405995 49407765 47022702 47024472 NC_060929.1 CM039038.1 97.63 True relocation, inconsistency = 46875 49456382 49462107 47026214 47031943 NC_060929.1 CM039038.1 97.63 True relocation, inconsistency = -101222 49360886 49364622 47031944 47035680 NC_060929.1 CM039038.1 97.84 True relocation, inconsistency = 41441 49406064 49407765 47035681 47037382 NC_060929.1 CM039038.1 98.05 True relocation, inconsistency = 40084 49448225 49450903 47037758 47040436 NC_060929.1 CM039038.1 98.02 True relocation, inconsistency = -7134 49443770 49446147 47040437 47042814 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = -40084 49406064 49407765 47042815 47044516 NC_060929.1 CM039038.1 97.95 True fake: not a misassembly (possible transposable element) 49422747 49424412 47044892 47046557 NC_060929.1 CM039038.1 97.66 True fake: not a misassembly (possible transposable element) 49405770 49407765 47047277 47049272 NC_060929.1 CM039038.1 97.7 True relocation, inconsistency = 40084 49448225 49454051 47049648 47055478 NC_060929.1 CM039038.1 97.74 True local misassembly 49448232 49452304 47056110 47060184 NC_060929.1 CM039038.1 97.94 True local misassembly 49450610 49452611 47060866 47062869 NC_060929.1 CM039038.1 97.15 True relocation, inconsistency = -90016 49362596 49365697 47062870 47065971 NC_060929.1 CM039038.1 97.16 True relocation, inconsistency = 210989 49576687 49578299 47065972 47067584 NC_060929.1 CM039038.1 98.39 True relocation, inconsistency = -130144 49448374 49453358 47067803 47072790 NC_060929.1 CM039038.1 97.92 True local misassembly 49449286 49451997 47072791 47075502 NC_060929.1 CM039038.1 97.93 True relocation, inconsistency = -35665 49416339 49417496 47075509 47076666 NC_060929.1 CM039038.1 97.67 True local misassembly 49416139 49420634 47076667 47081165 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = 28197 49448832 49452470 47081166 47084804 NC_060929.1 CM039038.1 97.83 True relocation, inconsistency = -96131 49360775 49364665 47089240 47093130 NC_060929.1 CM039038.1 97.64 True relocation, inconsistency = -15966 49348987 49350692 47093418 47095123 NC_060929.1 CM039038.1 98.42 True relocation, inconsistency = 55028 49405881 49407292 47095284 47096695 NC_060929.1 CM039038.1 98.73 True relocation, inconsistency = -77792 49329903 49333369 47097098 47100563 NC_060929.1 CM039038.1 98.04 True relocation, inconsistency = 26838 49360759 49364665 47101115 47105021 NC_060929.1 CM039038.1 97.65 True relocation, inconsistency = -15966 49348987 49350692 47105309 47107014 NC_060929.1 CM039038.1 98.36 True local misassembly 49352383 49354088 47108707 47110412 NC_060929.1 CM039038.1 98.18 True local misassembly 49349100 49350677 47110858 47112435 NC_060929.1 CM039038.1 98.04 True relocation, inconsistency = 91375 49443419 49446487 47113802 47116869 NC_060929.1 CM039038.1 97.78 True local misassembly 49448232 49452470 47116916 47121154 NC_060929.1 CM039038.1 97.81 True relocation, inconsistency = -8491 49448399 49452509 47125574 47129686 NC_060929.1 CM039038.1 97.72 True relocation, inconsistency = -103604 49348987 49350692 47129768 47131473 NC_060929.1 CM039038.1 98.3 True local misassembly 49352383 49354088 47133166 47134871 NC_060929.1 CM039038.1 98.42 True relocation, inconsistency = 50273 49405713 49407765 47136223 47138274 NC_060929.1 CM039038.1 97.81 True local misassembly 49404708 49405383 47138275 47138950 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = -83226 49322513 49327589 47139306 47144384 NC_060929.1 CM039038.1 97.76 True indel: stretch of mismatches 49328089 49329345 47144884 47146140 NC_060929.1 CM039038.1 98.73 True relocation, inconsistency = -38389 49292031 49293408 47147215 47148592 NC_060929.1 CM039038.1 96.52 True local misassembly 49294089 49294840 47148593 47149344 NC_060929.1 CM039038.1 98.54 True relocation, inconsistency = 25143 49324213 49327589 47153574 47156951 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = 120254 49448343 49454263 47157451 47163373 NC_060929.1 CM039038.1 97.69 True local misassembly 49452907 49453835 47163374 47164304 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = -49592 49404654 49405383 47164715 47165444 NC_060929.1 CM039038.1 98.77 True indel: stretch of mismatches 49405708 49407097 47165769 47167158 NC_060929.1 CM039038.1 98.71 True relocation, inconsistency = 41103 49448201 49452632 47167159 47171590 NC_060929.1 CM039038.1 97.32 True relocation, inconsistency = -100209 49358146 49359568 47177313 47178735 NC_060929.1 CM039038.1 98.24 True local misassembly 49361684 49363298 47180851 47182464 NC_060929.1 CM039038.1 97.4 True relocation, inconsistency = 75072 49448343 49454263 47192437 47198361 NC_060929.1 CM039038.1 97.55 True local misassembly 49448832 49453957 47198362 47203491 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = -92053 49361905 49365604 47203492 47207191 NC_060929.1 CM039038.1 97.45 True local misassembly 49362547 49364668 47207192 47209313 NC_060929.1 CM039038.1 97.36 True relocation, inconsistency = 83563 49448232 49454263 47209314 47215349 NC_060929.1 CM039038.1 97.75 True local misassembly 49448832 49453216 47215350 47219737 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = -49254 49404296 49405383 47220071 47221158 NC_060929.1 CM039038.1 98.71 True local misassembly 49405995 49407720 47221770 47223495 NC_060929.1 CM039038.1 97.97 True local misassembly 49406022 49407693 47223496 47225167 NC_060929.1 CM039038.1 97.91 True relocation, inconsistency = 40763 49448457 49451514 47225168 47228225 NC_060929.1 CM039038.1 98.06 True local misassembly 49448457 49452898 47228226 47232669 NC_060929.1 CM039038.1 97.75 True relocation, inconsistency = -46877 49406022 49406845 47232670 47233493 NC_060929.1 CM039038.1 98.53 True local misassembly 49404128 49405383 47233494 47234749 NC_060929.1 CM039038.1 98.25 True fake: not a misassembly (possible transposable element) 49448537 49451541 47235441 47238445 NC_060929.1 CM039038.1 97.84 True fake: not a misassembly (possible transposable element) 49406022 49407765 47238446 47240189 NC_060929.1 CM039038.1 97.63 True local misassembly 49404128 49405383 47240629 47241884 NC_060929.1 CM039038.1 98.25 True fake: not a misassembly (possible transposable element) 49443781 49446776 47242576 47245571 NC_060929.1 CM039038.1 97.8 True fake: not a misassembly (possible transposable element) 49406013 49407765 47245572 47247324 NC_060929.1 CM039038.1 97.63 True fake: not a misassembly (possible transposable element) 49448232 49451541 47247707 47251016 NC_060929.1 CM039038.1 97.98 True fake: not a misassembly (possible transposable element) 49416214 49419257 47251017 47254062 NC_060929.1 CM039038.1 97.79 True relocation, inconsistency = 29214 49448489 49451529 47254080 47257120 NC_060929.1 CM039038.1 97.96 True local misassembly 49450791 49451514 47257742 47258465 NC_060929.1 CM039038.1 98.14 True local misassembly 49448457 49453358 47258466 47263372 NC_060929.1 CM039038.1 97.72 True relocation, inconsistency = -46535 49406824 49407765 47263373 47264314 NC_060929.1 CM039038.1 97.95 True local misassembly 49405770 49407550 47265037 47266817 NC_060929.1 CM039038.1 98.09 True fake: not a misassembly (possible transposable element) 49448418 49452724 47267262 47271570 NC_060929.1 CM039038.1 97.94 True fake: not a misassembly (possible transposable element) 49407809 49409767 47271833 47273791 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = 35327 49448372 49454263 47277069 47282964 NC_060929.1 CM039038.1 97.66 True local misassembly 49450191 49453617 47282965 47286395 NC_060929.1 CM039038.1 97.83 True relocation, inconsistency = 122674 49576292 49578299 47286396 47288403 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = -130144 49448201 49451385 47288449 47291633 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = -90018 49361371 49364665 47291637 47294931 NC_060929.1 CM039038.1 97.69 True relocation, inconsistency = -23100 49341580 49342584 47294946 47295950 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = 114474 49457741 49460794 47296633 47299688 NC_060929.1 CM039038.1 97.64 True relocation, inconsistency = -64540 49396268 49397875 47299702 47301309 NC_060929.1 CM039038.1 97.7 True fake: not a misassembly (possible transposable element) 49361611 49364962 47302748 47306099 NC_060929.1 CM039038.1 97.4 True fake: not a misassembly (possible transposable element) 49404071 49404593 47306825 47307347 NC_060929.1 CM039038.1 98.28 True local misassembly 49404594 49405392 47307688 47308486 NC_060929.1 CM039038.1 98.5 True local misassembly 49405739 49407550 47308493 47310304 NC_060929.1 CM039038.1 97.9 True relocation, inconsistency = -46197 49361371 49364665 47310322 47313616 NC_060929.1 CM039038.1 97.66 True relocation, inconsistency = -49599 49315081 49316085 47313631 47314635 NC_060929.1 CM039038.1 98.01 True fake: not a misassembly (possible transposable element) 49457741 49460794 47315318 47318373 NC_060929.1 CM039038.1 97.64 True fake: not a misassembly (possible transposable element) 49315081 49316688 47318387 47319994 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 42125 49360593 49365008 47321774 47326189 NC_060929.1 CM039038.1 97.34 True relocation, inconsistency = 83223 49448232 49454263 47326190 47332224 NC_060929.1 CM039038.1 97.5 True local misassembly 49452907 49453663 47332225 47332983 NC_060929.1 CM039038.1 97.6 True relocation, inconsistency = -10188 49443476 49448188 47332984 47337696 NC_060929.1 CM039038.1 97.75 True local misassembly 49448869 49452470 47337697 47341298 NC_060929.1 CM039038.1 97.85 True relocation, inconsistency = -127386 49328145 49329468 47344359 47345682 NC_060929.1 CM039038.1 98.64 True indel: stretch of mismatches 49329677 49333369 47345891 47349582 NC_060929.1 CM039038.1 98.0 True relocation, inconsistency = 22082 49355452 49355967 47349583 47350098 NC_060929.1 CM039038.1 98.72 True local misassembly 49360593 49364962 47350308 47354677 NC_060929.1 CM039038.1 97.48 True relocation, inconsistency = -42125 49322838 49325536 47354678 47357377 NC_060929.1 CM039038.1 97.52 True relocation, inconsistency = 80169 49405711 49407305 47357383 47358977 NC_060929.1 CM039038.1 98.75 True relocation, inconsistency = -53331 49354588 49355934 47359591 47360937 NC_060929.1 CM039038.1 98.52 True local misassembly 49352396 49354088 47361136 47362828 NC_060929.1 CM039038.1 98.23 True local misassembly 49354602 49355934 47363342 47364674 NC_060929.1 CM039038.1 98.42 True indel: stretch of mismatches 49356287 49357956 47365027 47366696 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = 57748 49416073 49419988 47367065 47370983 NC_060929.1 CM039038.1 97.7 True relocation, inconsistency = -13925 49406064 49407308 47370984 47372227 NC_060929.1 CM039038.1 98.14 True fake: not a misassembly (possible transposable element) 49282115 49283732 47372729 47374345 NC_060929.1 CM039038.1 97.9 True fake: not a misassembly (possible transposable element) 49416129 49417581 47376292 47377745 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = -59106 49360593 49363658 47379863 47382924 NC_060929.1 CM039038.1 97.29 True relocation, inconsistency = 84582 49448413 49449590 47383097 47384274 NC_060929.1 CM039038.1 97.51 True local misassembly 49448232 49454263 47384275 47390306 NC_060929.1 CM039038.1 97.55 True local misassembly 49448832 49453942 47390307 47395419 NC_060929.1 CM039038.1 97.64 True local misassembly 49457586 49461101 47396004 47399521 NC_060929.1 CM039038.1 97.61 True relocation, inconsistency = -99865 49361237 49361950 47399522 47400230 NC_060929.1 CM039038.1 97.03 True fake: not a misassembly (possible transposable element) 49448232 49454263 47400231 47406259 NC_060929.1 CM039038.1 97.28 True fake: not a misassembly (possible transposable element) 49363035 49365008 47406405 47408378 NC_060929.1 CM039038.1 97.56 True fake: not a misassembly (possible transposable element) 49448232 49451662 47408379 47411803 NC_060929.1 CM039038.1 97.55 True fake: not a misassembly (possible transposable element) 49363035 49365697 47412856 47415518 NC_060929.1 CM039038.1 97.48 True fake: not a misassembly (possible transposable element) 49406459 49407765 47415519 47416825 NC_060929.1 CM039038.1 97.9 True fake: not a misassembly (possible transposable element) 49361664 49364531 47416922 47419788 NC_060929.1 CM039038.1 97.51 True relocation, inconsistency = -102600 49261932 49265378 47419789 47423236 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 45528 49311420 49315842 47423750 47428174 NC_060929.1 CM039038.1 98.44 True relocation, inconsistency = -37373 49278825 49281150 47428530 47430856 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 25481 49307025 49309387 47431250 47433613 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = 87302 49397045 49399372 47433969 47436297 NC_060929.1 CM039038.1 98.54 True relocation, inconsistency = 170225 49570647 49571321 47437347 47438021 NC_060929.1 CM039038.1 97.33 True relocation, inconsistency = -409367 49161955 49162563 47438022 47438630 NC_060929.1 CM039038.1 98.28 True translocation 125892748 125893790 47441064 47442107 NC_060925.1 CM039038.1 96.65 True translocation 49469038 49471283 47446864 47449109 NC_060929.1 CM039038.1 97.86 True relocation, inconsistency = 17332 49492487 49494872 47452981 47455366 NC_060929.1 CM039038.1 98.24 True relocation, inconsistency = -92068 49403138 49407177 47455700 47459738 NC_060929.1 CM039038.1 98.17 True local misassembly 49404211 49407177 47460510 47463476 NC_060929.1 CM039038.1 98.55 True relocation, inconsistency = -1091540 48316408 48316957 47464247 47464796 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = 1104786 49421844 49424206 47464897 47467259 NC_060929.1 CM039038.1 98.39 True relocation, inconsistency = -21740 49406876 49409261 47471669 47474055 NC_060929.1 CM039038.1 98.2 True relocation, inconsistency = 141002 49550788 49553277 47474580 47477069 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = -228648 49325090 49327541 47477530 47479982 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = 245640 49574059 49577450 47480860 47484254 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = -256172 49321694 49323996 47484670 47486973 NC_060929.1 CM039038.1 98.48 True relocation, scaffold gap is present, inconsistency = -15721 49309634 49311766 47488332 47490464 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 91718 49404211 49407177 47491191 47494157 NC_060929.1 CM039038.1 98.55 True relocation, inconsistency = -1091540 48316408 48316957 47494928 47495477 NC_060929.1 CM039038.1 98.18 True local misassembly 48316958 48319081 47495817 47497940 NC_060929.1 CM039038.1 98.45 True relocation, inconsistency = 1083385 49406876 49409261 47502350 47504736 NC_060929.1 CM039038.1 98.2 True relocation, inconsistency = 141002 49550788 49553277 47505261 47507750 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = -228648 49325090 49327541 47508211 47510663 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = 245640 49574059 49577450 47511541 47514935 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = -26167 49554558 49556676 47518210 47520324 NC_060929.1 CM039038.1 98.73 True relocation, inconsistency = -64570 49498603 49500134 47526821 47528353 NC_060929.1 CM039038.1 98.17 True relocation, inconsistency = -216738 49283778 49284883 47528735 47529840 NC_060929.1 CM039038.1 97.21 True relocation, inconsistency = -123637 49161247 49162516 47529841 47531110 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = -65238 49098468 49100184 47532300 47534017 NC_060929.1 CM039038.1 98.25 True relocation, inconsistency = 178004 49278566 49279108 47534395 47534937 NC_060929.1 CM039038.1 98.46 True relocation, inconsistency = 127054 49406163 49407177 47534938 47535952 NC_060929.1 CM039038.1 99.11 True relocation, inconsistency = 169209 49576391 49577409 47535957 47536975 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -416163 49161247 49162516 47536976 47538245 NC_060929.1 CM039038.1 98.19 True relocation, inconsistency = 249673 49413038 49415094 47539094 47541152 NC_060929.1 CM039038.1 98.01 True fake: not a misassembly (possible transposable element) 49438902 49439463 47541522 47542083 NC_060929.1 CM039038.1 98.75 True fake: not a misassembly (possible transposable element) 49413075 49415094 47545246 47547266 NC_060929.1 CM039038.1 97.87 True relocation, inconsistency = 29552 49444968 49446225 47547588 47548845 NC_060929.1 CM039038.1 98.65 True fake: not a misassembly (possible transposable element) 49348193 49350495 47549323 47551626 NC_060929.1 CM039038.1 98.22 True fake: not a misassembly (possible transposable element) 49442566 49444928 47551982 47554344 NC_060929.1 CM039038.1 98.14 True relocation, inconsistency = -36347 49408915 49411254 47554678 47557017 NC_060929.1 CM039038.1 98.12 True relocation, inconsistency = 93424 49511479 49512351 47563818 47564690 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = -48932 49464620 49467164 47565891 47568435 NC_060929.1 CM039038.1 97.41 True relocation, inconsistency = -118887 49349312 49350465 47569470 47570623 NC_060929.1 CM039038.1 97.92 True local misassembly 49352708 49353829 47572866 47573987 NC_060929.1 CM039038.1 97.86 True relocation, inconsistency = -192604 49161926 49162563 47574688 47575325 NC_060929.1 CM039038.1 98.75 True relocation, inconsistency = 279224 49442562 49443090 47576100 47576628 NC_060929.1 CM039038.1 97.35 True indel: indel (<= 5bp) 49443091 49444109 47576630 47577648 NC_060929.1 CM039038.1 98.04 True indel: indel (<= 5bp) 49444110 49445059 47577650 47578599 NC_060929.1 CM039038.1 97.58 True indel: indel (<= 5bp) 49445185 49446955 47578724 47580494 NC_060929.1 CM039038.1 97.91 True local misassembly 49447296 49447846 47580495 47581045 NC_060929.1 CM039038.1 96.91 True indel: indel (<= 5bp) 49447847 49448865 47581047 47582065 NC_060929.1 CM039038.1 98.43 True indel: indel (<= 5bp) 49448866 49449815 47582067 47583016 NC_060929.1 CM039038.1 97.58 True indel: indel (<= 5bp) 49449941 49451696 47583141 47584896 NC_060929.1 CM039038.1 98.12 True relocation, inconsistency = -25478 49427163 49428932 47585841 47587608 NC_060929.1 CM039038.1 97.46 True relocation, inconsistency = -67937 49361005 49363245 47587618 47589857 NC_060929.1 CM039038.1 97.41 True local misassembly 49362227 49362967 47589858 47590598 NC_060929.1 CM039038.1 97.6 True relocation, inconsistency = 28194 49391162 49393153 47590599 47592592 NC_060929.1 CM039038.1 97.64 True relocation, inconsistency = 169545 49563059 49564396 47592953 47594291 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -211326 49357304 49359602 47598525 47600825 NC_060929.1 CM039038.1 97.31 True relocation, inconsistency = -1043982 48318022 48319081 47603227 47604286 NC_060929.1 CM039038.1 98.58 True relocation, inconsistency = 1087461 49406895 49409261 47604639 47607005 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = -330537 49079347 49081302 47607628 47609584 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = 18005 49099308 49099830 47609585 47610107 NC_060929.1 CM039038.1 97.85 True indel: indel (<= 5bp) 49099832 49100466 47610108 47610742 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = 257160 49358395 49359628 47611511 47612743 NC_060929.1 CM039038.1 98.7 True relocation, inconsistency = 48916 49408915 49411237 47613114 47615437 NC_060929.1 CM039038.1 97.59 True relocation, inconsistency = -87983 49325884 49329579 47618067 47621763 NC_060929.1 CM039038.1 97.54 True relocation, inconsistency = -511631 48818077 48819346 47621892 47623159 NC_060929.1 CM039038.1 97.4 True relocation, inconsistency = 521485 49341271 49342351 47623599 47624679 NC_060929.1 CM039038.1 98.24 True relocation, inconsistency = 18344 49360778 49366330 47624762 47630308 NC_060929.1 CM039038.1 97.17 True relocation, inconsistency = -2098316 47268424 47269467 47630718 47631758 NC_060929.1 CM039038.1 98.58 True relocation, inconsistency = 2079632 49349100 49353751 47631759 47636413 NC_060929.1 CM039038.1 97.51 True relocation, inconsistency = -2264778 47090150 47091019 47637590 47638459 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = 2297050 49388636 49391055 47639026 47641448 NC_060929.1 CM039038.1 98.23 True relocation, inconsistency = 183475 49575645 49577244 47642563 47644162 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = -287089 49290718 49292191 47644725 47646199 NC_060929.1 CM039038.1 97.22 True relocation, inconsistency = 274861 49569194 49570985 47648341 47650132 NC_060929.1 CM039038.1 97.55 True relocation, inconsistency = -250733 49320253 49321178 47650133 47651058 NC_060929.1 CM039038.1 97.49 True relocation, inconsistency = 18684 49339863 49343549 47651059 47654742 NC_060929.1 CM039038.1 97.48 True relocation, inconsistency = -54361 49290718 49291901 47656272 47657456 NC_060929.1 CM039038.1 97.55 True relocation, inconsistency = 34314 49326952 49328577 47658193 47659819 NC_060929.1 CM039038.1 97.79 True relocation, inconsistency = 128064 49464159 49465170 47667337 47668348 NC_060929.1 CM039038.1 97.92 True translocation 122191889 122193064 47670363 47671537 NC_060925.1 CM039038.1 95.49 True translocation 49389191 49391098 47672530 47674437 NC_060929.1 CM039038.1 98.38 True relocation, inconsistency = 117895 49513255 49514784 47678699 47680226 NC_060929.1 CM039038.1 97.25 True relocation, inconsistency = 68654 49587186 49588238 47683974 47685028 NC_060929.1 CM039038.1 98.2 True relocation, inconsistency = -133203 49456304 49458129 47686297 47688121 NC_060929.1 CM039038.1 97.81 True relocation, inconsistency = -296888 49161926 49162563 47688806 47689443 NC_060929.1 CM039038.1 98.75 True relocation, inconsistency = -81544 49082139 49084160 47690563 47692584 NC_060929.1 CM039038.1 98.71 True relocation, inconsistency = 328499 49414065 49419366 47693990 47699288 NC_060929.1 CM039038.1 97.66 True fake: not a misassembly (possible transposable element) 47393811 47394400 47699289 47699878 NC_060929.1 CM039038.1 97.14 True fake: not a misassembly (possible transposable element) 49413918 49418005 47700291 47704377 NC_060929.1 CM039038.1 97.56 True relocation, inconsistency = -52990 49365160 49368021 47704522 47707380 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = -1833207 47535169 47535798 47707735 47708364 NC_060929.1 CM039038.1 97.3 True relocation, inconsistency = 1877707 49413918 49418005 47708777 47712863 NC_060929.1 CM039038.1 97.53 True local misassembly 49413430 49418007 47713721 47718298 NC_060929.1 CM039038.1 97.93 True local misassembly 49413540 49418007 47718585 47723054 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = -127391 49290957 49292612 47723395 47725050 NC_060929.1 CM039038.1 97.77 True relocation, inconsistency = 25826 49321518 49322213 47728130 47728825 NC_060929.1 CM039038.1 97.38 True relocation, inconsistency = 109043 49431257 49432275 47728826 47729844 NC_060929.1 CM039038.1 97.64 True local misassembly 49432939 49433579 47730168 47730808 NC_060929.1 CM039038.1 96.88 True indel: indel (<= 5bp) 49434042 49434938 47731267 47732163 NC_060929.1 CM039038.1 96.88 True relocation, inconsistency = -75413 49360012 49361240 47732650 47733878 NC_060929.1 CM039038.1 97.53 True relocation, inconsistency = -25479 49335762 49338453 47733879 47736567 NC_060929.1 CM039038.1 97.51 True relocation, inconsistency = 52647 49394551 49396265 47740018 47741733 NC_060929.1 CM039038.1 97.9 True relocation, inconsistency = 113470 49509854 49511702 47741852 47743698 NC_060929.1 CM039038.1 98.43 True relocation, inconsistency = -164421 49349688 49350646 47746105 47747063 NC_060929.1 CM039038.1 98.64 True local misassembly 49352141 49353751 47748560 47750169 NC_060929.1 CM039038.1 98.7 True relocation, inconsistency = 24139 49389191 49391092 47761470 47763371 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = -2109860 47281415 47282455 47763554 47764595 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = 1500397 48784298 48786886 47766041 47768629 NC_060929.1 CM039038.1 98.42 True relocation, inconsistency = 560891 49348193 49350495 47769045 47771348 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 14607 49365831 49367870 47772077 47774115 NC_060929.1 CM039038.1 98.28 True relocation, inconsistency = -41448 49326423 49327392 47774116 47775085 NC_060929.1 CM039038.1 98.3 True relocation, inconsistency = 173935 49501661 49502172 47775419 47775931 NC_060929.1 CM039038.1 97.47 True relocation, inconsistency = -137923 49365831 49367870 47777513 47779552 NC_060929.1 CM039038.1 98.33 True relocation, inconsistency = -41448 49326423 49327392 47779553 47780522 NC_060929.1 CM039038.1 98.4 True relocation, inconsistency = 245302 49576307 49577594 47784135 47785420 NC_060929.1 CM039038.1 97.9 True relocation, inconsistency = -290486 49289557 49291523 47787869 47789835 NC_060929.1 CM039038.1 97.26 True relocation, inconsistency = 63534 49355058 49355789 47789836 47790566 NC_060929.1 CM039038.1 97.62 True indel: indel (<= 5bp) 49356287 49356796 47791063 47791572 NC_060929.1 CM039038.1 98.04 True indel: indel (<= 5bp) 49356798 49357981 47791573 47792756 NC_060929.1 CM039038.1 98.56 True relocation, inconsistency = -11210 49346998 49353751 47792983 47799731 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = 60467 49414219 49418005 47799732 47803517 NC_060929.1 CM039038.1 97.63 True relocation, inconsistency = -52990 49365211 49368021 47803713 47806521 NC_060929.1 CM039038.1 98.29 True fake: not a misassembly (possible transposable element) 49277666 49280990 47806877 47810198 NC_060929.1 CM039038.1 97.53 True fake: not a misassembly (possible transposable element) 49365246 49368021 47810199 47812974 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -19364 49348658 49349342 47812975 47813659 NC_060929.1 CM039038.1 97.66 True relocation, inconsistency = 55708 49405100 49407794 47813709 47816403 NC_060929.1 CM039038.1 97.92 True relocation, inconsistency = 52311 49460106 49460860 47816404 47817160 NC_060929.1 CM039038.1 98.04 True relocation, inconsistency = 28544 49489797 49491292 47817553 47819048 NC_060929.1 CM039038.1 97.39 True relocation, inconsistency = -38057 49456505 49457775 47822318 47823587 NC_060929.1 CM039038.1 97.88 True relocation, inconsistency = -527589 48930461 48933192 47823862 47826594 NC_060929.1 CM039038.1 97.44 True relocation, inconsistency = 616281 49551019 49553277 47828140 47830398 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = -277572 49277878 49281150 47832571 47835836 NC_060929.1 CM039038.1 97.5 True relocation, inconsistency = 64213 49348386 49350343 47838859 47840817 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = -7474 49344468 49345889 47842416 47843838 NC_060929.1 CM039038.1 98.03 True relocation, inconsistency = -83916 49262971 49264239 47844836 47846104 NC_060929.1 CM039038.1 98.19 True relocation, inconsistency = 244603 49511899 49515172 47849161 47852433 NC_060929.1 CM039038.1 97.71 True relocation, inconsistency = -149134 49366362 49368021 47852757 47854416 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = -44164 49325272 49327392 47855831 47857952 NC_060929.1 CM039038.1 98.54 True local misassembly 49333524 49335886 47858309 47860671 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = 83562 49419782 49422168 47861005 47863390 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -115500 49307025 49309387 47863747 47866109 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = 175980 49492511 49496771 47873253 47877510 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = 55393 49554558 49556676 47879904 47882022 NC_060929.1 CM039038.1 98.63 True relocation, inconsistency = -28210 49528885 49529698 47882441 47883254 NC_060929.1 CM039038.1 98.77 True relocation, inconsistency = -36699 49494526 49496911 47884781 47887167 NC_060929.1 CM039038.1 98.37 True relocation, inconsistency = -1135363 48361964 48364267 47887583 47889887 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = 896534 49262055 49263520 47891141 47892607 NC_060929.1 CM039038.1 97.61 True relocation, inconsistency = 125699 49389775 49391222 47893163 47894612 NC_060929.1 CM039038.1 98.83 True relocation, inconsistency = 162745 49554558 49556676 47895203 47897321 NC_060929.1 CM039038.1 98.87 True relocation, inconsistency = 13932 49570647 49571656 47897360 47898369 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = -185175 49390259 49391216 47902147 47903105 NC_060929.1 CM039038.1 98.76 True relocation, inconsistency = -74055 49317162 49318221 47903106 47904166 NC_060929.1 CM039038.1 98.3 True relocation, inconsistency = 175971 49494526 49496911 47904500 47906886 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = -156609 49340863 49342300 47907447 47908885 NC_060929.1 CM039038.1 98.92 True relocation, inconsistency = 208262 49550563 49553277 47908886 47911600 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 17331 49570647 49571656 47911639 47912648 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = -217784 49356080 49357598 47914856 47916374 NC_060929.1 CM039038.1 98.35 True local misassembly 49357537 49359594 47917669 47919727 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = 72695 49432362 49435955 47919800 47923395 NC_060929.1 CM039038.1 97.78 True relocation, inconsistency = -130107 49307025 49309387 47924572 47926934 NC_060929.1 CM039038.1 97.97 True relocation, inconsistency = 77114 49388144 49389122 47928577 47929555 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = 186192 49575967 49577450 47930208 47931692 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = -226281 49356080 49357598 47936603 47938121 NC_060929.1 CM039038.1 98.42 True local misassembly 49357537 49359594 47939416 47941474 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = 68278 49427987 49431672 47941589 47945275 NC_060929.1 CM039038.1 97.99 True relocation, inconsistency = -124672 49307025 49309387 47945300 47947662 NC_060929.1 CM039038.1 97.97 True relocation, inconsistency = 77114 49388144 49389122 47949305 47950283 NC_060929.1 CM039038.1 98.37 True relocation, inconsistency = 186192 49575967 49577450 47950936 47952420 NC_060929.1 CM039038.1 98.25 True relocation, inconsistency = -220502 49357309 49362007 47952781 47957482 NC_060929.1 CM039038.1 97.53 True relocation, inconsistency = -109396 49254026 49255367 47958897 47960239 NC_060929.1 CM039038.1 97.99 True relocation, inconsistency = 133852 49389784 49391222 47960804 47962244 NC_060929.1 CM039038.1 98.75 True fake: not a misassembly (possible transposable element) 49475834 49478219 47962613 47964999 NC_060929.1 CM039038.1 98.03 True fake: not a misassembly (possible transposable element) 49389775 49391222 47965555 47967004 NC_060929.1 CM039038.1 98.76 True relocation, inconsistency = -34309 49357282 49359628 47967373 47969721 NC_060929.1 CM039038.1 98.17 True indel: stretch of mismatches 49359999 49361985 47970092 47972078 NC_060929.1 CM039038.1 98.34 True relocation, inconsistency = -45862 49316743 49318157 47972698 47974112 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = 123989 49442582 49443090 47974548 47975056 NC_060929.1 CM039038.1 97.25 True indel: indel (<= 5bp) 49443091 49444816 47975058 47976783 NC_060929.1 CM039038.1 98.55 True local misassembly 49447322 49448997 47979630 47981306 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = 100919 49551023 49553277 47982413 47984667 NC_060929.1 CM039038.1 98.67 True relocation, inconsistency = -166822 49388144 49389122 47986356 47987334 NC_060929.1 CM039038.1 98.47 True local misassembly 49388144 49389122 47989075 47990053 NC_060929.1 CM039038.1 98.37 True local misassembly 49389775 49391207 47990706 47992140 NC_060929.1 CM039038.1 98.4 True relocation, inconsistency = -1211466 48180209 48181406 47992608 47993805 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = 1220980 49406782 49409216 47998201 48000635 NC_060929.1 CM039038.1 98.36 True relocation, inconsistency = -20042 49389775 49391207 48001236 48002670 NC_060929.1 CM039038.1 98.47 True relocation, inconsistency = -40756 49359225 49359865 48011444 48012084 NC_060929.1 CM039038.1 97.35 True relocation, inconsistency = 72694 49434298 49436981 48013823 48016508 NC_060929.1 CM039038.1 97.47 True local misassembly 49432939 49434598 48017220 48018879 NC_060929.1 CM039038.1 97.89 True indel: stretch of mismatches 49435042 49435967 48019323 48020249 NC_060929.1 CM039038.1 97.73 True fake: not a misassembly (possible transposable element) 47347542 47350983 48020250 48023691 NC_060929.1 CM039038.1 98.2 True fake: not a misassembly (possible transposable element) 49444582 49446225 48023770 48025414 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = -99864 49350055 49351042 48029108 48030096 NC_060929.1 CM039038.1 97.78 True relocation, inconsistency = 78473 49434298 49436981 48034879 48037564 NC_060929.1 CM039038.1 97.54 True local misassembly 49432939 49434598 48038276 48039935 NC_060929.1 CM039038.1 97.83 True indel: stretch of mismatches 49434918 49438340 48040255 48043679 NC_060929.1 CM039038.1 97.72 True relocation, inconsistency = -2092164 47347569 47350983 48045072 48048486 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = 2079933 49433931 49434938 48051501 48052508 NC_060929.1 CM039038.1 97.52 True relocation, inconsistency = -2155041 47281118 47281867 48053729 48054476 NC_060929.1 CM039038.1 98.53 True relocation, inconsistency = 2166582 49460450 49461485 48066477 48067512 NC_060929.1 CM039038.1 97.78 True relocation, inconsistency = 105347 49577010 49577989 48077690 48078669 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = -137960 49442450 49443775 48081090 48082416 NC_060929.1 CM039038.1 97.29 True local misassembly 49447394 49449358 48091134 48093098 NC_060929.1 CM039038.1 97.66 True local misassembly 49450672 49452260 48094406 48095996 NC_060929.1 CM039038.1 98.05 True local misassembly 49452784 49456114 48096520 48099852 NC_060929.1 CM039038.1 97.63 True relocation, inconsistency = 106362 49562477 49563036 48099853 48100412 NC_060929.1 CM039038.1 97.79 True relocation, inconsistency = 9177 49577010 49577989 48105209 48106188 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = -104670 49475740 49479099 48108609 48111967 NC_060929.1 CM039038.1 97.23 True relocation, inconsistency = -126362 49361604 49363263 48120834 48122491 NC_060929.1 CM039038.1 97.35 True relocation, inconsistency = 100204 49463911 49466174 48122935 48125198 NC_060929.1 CM039038.1 97.7 True relocation, inconsistency = -34646 49432282 49435906 48125952 48129578 NC_060929.1 CM039038.1 98.13 True relocation, inconsistency = -2310969 47126385 47126987 48131026 48131628 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = 2328971 49456089 49462738 48131759 48138408 NC_060929.1 CM039038.1 97.7 True local misassembly 49458666 49462104 48138409 48141851 NC_060929.1 CM039038.1 97.69 True relocation, inconsistency = 26508 49488776 49490492 48142015 48143731 NC_060929.1 CM039038.1 98.6 True relocation, inconsistency = -56735 49434017 49434549 48143991 48144523 NC_060929.1 CM039038.1 99.25 True relocation, inconsistency = 20378 49456855 49461518 48146451 48151116 NC_060929.1 CM039038.1 97.78 True local misassembly 49456085 49462107 48151117 48157143 NC_060929.1 CM039038.1 98.01 True local misassembly 49456085 49462738 48157572 48164229 NC_060929.1 CM039038.1 97.81 True local misassembly 49457307 49461516 48164230 48168433 NC_060929.1 CM039038.1 97.63 True local misassembly 49456087 49461518 48168434 48173863 NC_060929.1 CM039038.1 97.79 True local misassembly 49456085 49462738 48173864 48180521 NC_060929.1 CM039038.1 97.78 True local misassembly 49457307 49461518 48180522 48184735 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49462738 48184736 48191393 NC_060929.1 CM039038.1 97.78 True local misassembly 49457307 49461518 48191394 48195607 NC_060929.1 CM039038.1 97.79 True local misassembly 49456085 49462738 48195608 48202265 NC_060929.1 CM039038.1 97.75 True local misassembly 49457307 49461518 48202266 48206479 NC_060929.1 CM039038.1 97.69 True local misassembly 49456085 49462738 48206480 48213137 NC_060929.1 CM039038.1 97.85 True local misassembly 49457307 49461518 48213138 48217351 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49461518 48217352 48222786 NC_060929.1 CM039038.1 97.9 True local misassembly 49456085 49462738 48222787 48229444 NC_060929.1 CM039038.1 97.75 True local misassembly 49457307 49461518 48229445 48233658 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49462738 48233659 48240316 NC_060929.1 CM039038.1 97.76 True local misassembly 49457307 49462146 48240317 48245160 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -30228 49431919 49437977 48245161 48251218 NC_060929.1 CM039038.1 98.02 True relocation, inconsistency = 70668 49511052 49511801 48253625 48254374 NC_060929.1 CM039038.1 98.93 True translocation 122191889 122193064 48256651 48257825 NC_060925.1 CM039038.1 95.58 True translocation 49389508 49391098 48259135 48260725 NC_060929.1 CM039038.1 99.06 True fake: not a misassembly (possible transposable element) 49389191 49391092 48272043 48273944 NC_060929.1 CM039038.1 98.11 True fake: not a misassembly (possible transposable element) 49401591 49404419 48276629 48279454 NC_060929.1 CM039038.1 97.67 True relocation, inconsistency = -963123 48441297 48441936 48279455 48280093 NC_060929.1 CM039038.1 98.66 True relocation, inconsistency = 645497 49087434 49090277 48280094 48282936 NC_060929.1 CM039038.1 97.93 True relocation, inconsistency = 71009 49161926 49162563 48283576 48284213 NC_060929.1 CM039038.1 98.43 True relocation, inconsistency = -81544 49082139 49084160 48285333 48287354 NC_060929.1 CM039038.1 98.66 True relocation, inconsistency = 280942 49365831 49367870 48288083 48290122 NC_060929.1 CM039038.1 98.28 True relocation, inconsistency = -14949 49352922 49353891 48290123 48291092 NC_060929.1 CM039038.1 98.3 True relocation, inconsistency = 218802 49576307 49577594 48294706 48295993 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -171926 49407014 49407659 48297339 48297984 NC_060929.1 CM039038.1 97.06 True relocation, inconsistency = -120598 49289557 49291523 48300480 48302446 NC_060929.1 CM039038.1 97.26 True relocation, inconsistency = 113128 49404652 49405394 48302447 48303188 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -85263 49320132 49327252 48303189 48310306 NC_060929.1 CM039038.1 97.88 True local misassembly 49326234 49328128 48310307 48312200 NC_060929.1 CM039038.1 98.26 True relocation, inconsistency = 37031 49365160 49367385 48312201 48314423 NC_060929.1 CM039038.1 98.29 True relocation, inconsistency = -58094 49309292 49315078 48314424 48320206 NC_060929.1 CM039038.1 98.17 True relocation, inconsistency = 98855 49413934 49418007 48320207 48324279 NC_060929.1 CM039038.1 98.03 True relocation, inconsistency = -52990 49365160 49368021 48324422 48327283 NC_060929.1 CM039038.1 98.01 True local misassembly 49369381 49370705 48327284 48328607 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = 87295 49458214 49460860 48328821 48331469 NC_060929.1 CM039038.1 98.08 True relocation, inconsistency = 89713 49550977 49553277 48331873 48334173 NC_060929.1 CM039038.1 98.04 True relocation, inconsistency = -101265 49457977 49459251 48340138 48341411 NC_060929.1 CM039038.1 97.57 True fake: not a misassembly (possible transposable element) 49425603 49428198 48341733 48344326 NC_060929.1 CM039038.1 97.96 True fake: not a misassembly (possible transposable element) 49461868 49463522 48344710 48346363 NC_060929.1 CM039038.1 97.1 True relocation, inconsistency = -222167 49243181 49246874 48348189 48351881 NC_060929.1 CM039038.1 98.29 True relocation, inconsistency = -152184 49096978 49100466 48354169 48357659 NC_060929.1 CM039038.1 98.14 True relocation, inconsistency = 241875 49342915 49344720 48358233 48360038 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = -11553 49333524 49335886 48360395 48362757 NC_060929.1 CM039038.1 98.26 True relocation, inconsistency = 83562 49419782 49422168 48363091 48365476 NC_060929.1 CM039038.1 97.86 True relocation, inconsistency = -176984 49250266 49251160 48370558 48371452 NC_060929.1 CM039038.1 98.44 True relocation, inconsistency = 150833 49403162 49409121 48372621 48378578 NC_060929.1 CM039038.1 98.24 True relocation, inconsistency = 143043 49554558 49556676 48380972 48383090 NC_060929.1 CM039038.1 98.63 True local misassembly 49553656 49556676 48383469 48386490 NC_060929.1 CM039038.1 98.28 True relocation, inconsistency = -170221 49388144 49389122 48388179 48389158 NC_060929.1 CM039038.1 97.86 True local misassembly 49389775 49391222 48389811 48391260 NC_060929.1 CM039038.1 98.69 True fake: not a misassembly (possible transposable element) 49553656 49555188 48394349 48395880 NC_060929.1 CM039038.1 98.04 True fake: not a misassembly (possible transposable element) 49399962 49401345 48397970 48399353 NC_060929.1 CM039038.1 97.54 True local misassembly 49401685 49402948 48399354 48400617 NC_060929.1 CM039038.1 97.31 True local misassembly 49404040 49405241 48401710 48402912 NC_060929.1 CM039038.1 98.5 True fake: not a misassembly (possible transposable element) 47085369 47087754 48405228 48407614 NC_060929.1 CM039038.1 97.95 True fake: not a misassembly (possible transposable element) 49415931 49417372 48408170 48409613 NC_060929.1 CM039038.1 98.38 True relocation, inconsistency = 133190 49550563 49553322 48409614 48412373 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = 21069 49574392 49575394 48412374 48413376 NC_060929.1 CM039038.1 97.52 True relocation, inconsistency = -221522 49356080 49357598 48415584 48417102 NC_060929.1 CM039038.1 98.42 True local misassembly 49357537 49359594 48418397 48420455 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = 72695 49432362 49437447 48420528 48425615 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 53339 49492487 49494809 48427316 48429638 NC_060929.1 CM039038.1 98.49 True fake: not a misassembly (possible transposable element) 49575967 49577450 48430257 48431741 NC_060929.1 CM039038.1 98.18 True fake: not a misassembly (possible transposable element) 49503359 49505742 48434795 48437181 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -27523 49478775 49482296 48437737 48441261 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = -168493 49314364 49315842 48441822 48443301 NC_060929.1 CM039038.1 98.31 True local misassembly 49314364 49315842 48443862 48445341 NC_060929.1 CM039038.1 98.65 True relocation, inconsistency = 35331 49351531 49353891 48445699 48448061 NC_060929.1 CM039038.1 98.05 True fake: not a misassembly (possible transposable element) 49483989 49486367 48448395 48450773 NC_060929.1 CM039038.1 98.32 True fake: not a misassembly (possible transposable element) 49359999 49363403 48451114 48454519 NC_060929.1 CM039038.1 97.86 True relocation, inconsistency = 78807 49442566 49444882 48454875 48457192 NC_060929.1 CM039038.1 98.36 True relocation, inconsistency = -87980 49357282 49359628 48457572 48459920 NC_060929.1 CM039038.1 98.13 True indel: stretch of mismatches 49359999 49363403 48460291 48463696 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = 112097 49475834 49478212 48464030 48466408 NC_060929.1 CM039038.1 98.32 True local misassembly 49478213 49480201 48466749 48468737 NC_060929.1 CM039038.1 98.24 True local misassembly 49480813 49482296 48469350 48470833 NC_060929.1 CM039038.1 98.25 True relocation, inconsistency = -80851 49401817 49403427 48471205 48472815 NC_060929.1 CM039038.1 98.08 True relocation, inconsistency = 139302 49551023 49553277 48481109 48483363 NC_060929.1 CM039038.1 98.67 True relocation, inconsistency = -164783 49388895 49391221 48483764 48486091 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = -43480 49348197 49350495 48486547 48488846 NC_060929.1 CM039038.1 98.39 True relocation, inconsistency = 36005 49388144 49389122 48490490 48491468 NC_060929.1 CM039038.1 98.26 True local misassembly 49389775 49391207 48492121 48493555 NC_060929.1 CM039038.1 98.4 True fake: not a misassembly (possible transposable element) 49468944 49471283 48499616 48501955 NC_060929.1 CM039038.1 97.99 True fake: not a misassembly (possible transposable element) 49397930 49399350 48502656 48504077 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = -76088 49326952 49328460 48507767 48509275 NC_060929.1 CM039038.1 97.81 True relocation, inconsistency = 26502 49359225 49359865 48513538 48514178 NC_060929.1 CM039038.1 97.35 True relocation, inconsistency = 84243 49445847 49448605 48515917 48518676 NC_060929.1 CM039038.1 97.68 True relocation, inconsistency = -2101334 47348367 47350983 48519772 48522388 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 2081971 49433033 49434676 48522467 48524111 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = -84919 49353451 49354959 48527805 48529313 NC_060929.1 CM039038.1 97.75 True fake: not a misassembly (possible transposable element) 49561869 49563636 48529315 48531083 NC_060929.1 CM039038.1 97.29 True fake: not a misassembly (possible transposable element) 49359225 49359865 48536968 48537608 NC_060929.1 CM039038.1 97.35 True relocation, inconsistency = 72694 49434298 49436981 48539347 48542032 NC_060929.1 CM039038.1 97.51 True local misassembly 49432939 49434598 48542744 48544403 NC_060929.1 CM039038.1 97.89 True local misassembly 49435122 49438340 48544927 48548147 NC_060929.1 CM039038.1 97.77 True relocation, inconsistency = -72352 49365989 49367380 48548148 48549539 NC_060929.1 CM039038.1 97.71 True relocation, inconsistency = -1931781 47435600 47439014 48549540 48552953 NC_060929.1 CM039038.1 98.07 True relocation, inconsistency = 2128159 49577010 49577989 48562790 48563769 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = -137960 49442450 49443775 48566190 48567516 NC_060929.1 CM039038.1 97.36 True local misassembly 49447396 49449532 48576236 48578372 NC_060929.1 CM039038.1 97.52 True relocation, inconsistency = -7127 49444554 49446147 48580521 48582113 NC_060929.1 CM039038.1 97.62 True indel: stretch of mismatches 49446591 49450232 48582557 48586199 NC_060929.1 CM039038.1 97.67 True relocation, inconsistency = 121651 49577010 49577989 48591326 48592305 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = -137960 49442450 49443775 48594726 48596052 NC_060929.1 CM039038.1 97.36 True relocation, inconsistency = -33631 49415111 49416261 48601019 48602170 NC_060929.1 CM039038.1 97.05 True local misassembly 49414484 49415381 48602430 48603327 NC_060929.1 CM039038.1 97.77 True relocation, inconsistency = 25142 49444554 49446147 48607358 48608951 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = 51303 49497894 49502597 48609395 48614100 NC_060929.1 CM039038.1 97.66 True relocation, inconsistency = -61495 49443469 49448217 48616467 48621216 NC_060929.1 CM039038.1 97.79 True relocation, inconsistency = 7811 49456085 49461518 48621273 48626704 NC_060929.1 CM039038.1 97.61 True local misassembly 49456085 49462738 48626705 48633362 NC_060929.1 CM039038.1 97.72 True local misassembly 49457307 49458802 48633363 48634858 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462107 48634859 48640885 NC_060929.1 CM039038.1 98.01 True local misassembly 49456085 49462738 48641314 48647967 NC_060929.1 CM039038.1 97.73 True local misassembly 49457307 49461518 48647968 48652172 NC_060929.1 CM039038.1 97.63 True local misassembly 49456085 49458800 48652173 48654888 NC_060929.1 CM039038.1 97.82 True local misassembly 49456087 49461518 48654889 48660322 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462738 48660323 48666980 NC_060929.1 CM039038.1 97.79 True local misassembly 49457307 49461518 48666981 48671194 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49462738 48671195 48677852 NC_060929.1 CM039038.1 97.76 True local misassembly 49457307 49460161 48677853 48680707 NC_060929.1 CM039038.1 97.84 True local misassembly 49456085 49462738 48680708 48687365 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 48687366 48691579 NC_060929.1 CM039038.1 97.81 True local misassembly 49456085 49462738 48691580 48698237 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 48698238 48702451 NC_060929.1 CM039038.1 97.78 True local misassembly 49456085 49462738 48702452 48709109 NC_060929.1 CM039038.1 97.82 True local misassembly 49457307 49461518 48709110 48713323 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462738 48713324 48719981 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 48719982 48724195 NC_060929.1 CM039038.1 97.84 True local misassembly 49456085 49462738 48724196 48730853 NC_060929.1 CM039038.1 97.78 True local misassembly 49457307 49462738 48730854 48736289 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = -26491 49437032 49438334 48737074 48738376 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49438391 49440121 48738433 48740163 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = 15963 49456085 49462146 48740164 48746229 NC_060929.1 CM039038.1 97.79 True local misassembly 49456375 49460161 48746230 48750016 NC_060929.1 CM039038.1 97.79 True local misassembly 49456085 49462738 48750017 48756674 NC_060929.1 CM039038.1 97.78 True local misassembly 49457307 49462738 48756675 48762110 NC_060929.1 CM039038.1 97.81 True local misassembly 49456563 49460161 48762387 48765985 NC_060929.1 CM039038.1 97.7 True local misassembly 49456085 49461518 48765986 48771420 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49462738 48771421 48778078 NC_060929.1 CM039038.1 97.87 True local misassembly 49458666 49462447 48778079 48781864 NC_060929.1 CM039038.1 97.86 True relocation, inconsistency = -25812 49437032 49438340 48782261 48783569 NC_060929.1 CM039038.1 98.17 True relocation, inconsistency = 18681 49457104 49460161 48783652 48786709 NC_060929.1 CM039038.1 97.71 True local misassembly 49456085 49462738 48786710 48793367 NC_060929.1 CM039038.1 97.81 True local misassembly 49457307 49458802 48793368 48794863 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462107 48794864 48800890 NC_060929.1 CM039038.1 97.99 True relocation, inconsistency = -25132 49437032 49438334 48800947 48802249 NC_060929.1 CM039038.1 98.47 True indel: stretch of mismatches 49438391 49440088 48802306 48804003 NC_060929.1 CM039038.1 98.29 True local misassembly 49437037 49438390 48804350 48805704 NC_060929.1 CM039038.1 98.38 True relocation, inconsistency = 18002 49456441 49461518 48805753 48810832 NC_060929.1 CM039038.1 97.78 True local misassembly 49456085 49462738 48810833 48817490 NC_060929.1 CM039038.1 97.91 True local misassembly 49457307 49461518 48817491 48821704 NC_060929.1 CM039038.1 97.91 True local misassembly 49456085 49462738 48821705 48828362 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462107 48828500 48834526 NC_060929.1 CM039038.1 98.11 True local misassembly 49458214 49461518 48834706 48838012 NC_060929.1 CM039038.1 97.97 True local misassembly 49456085 49462738 48838013 48844670 NC_060929.1 CM039038.1 97.82 True local misassembly 49457307 49461518 48844671 48848884 NC_060929.1 CM039038.1 97.92 True local misassembly 49456085 49462738 48848885 48855542 NC_060929.1 CM039038.1 97.75 True local misassembly 49456085 49462447 48855680 48862044 NC_060929.1 CM039038.1 97.88 True relocation, inconsistency = -25812 49437032 49438334 48862441 48863743 NC_060929.1 CM039038.1 98.16 True indel: stretch of mismatches 49438391 49440121 48863800 48865530 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 15963 49456085 49457443 48865531 48866889 NC_060929.1 CM039038.1 97.79 True local misassembly 49456085 49463425 48866890 48874228 NC_060929.1 CM039038.1 97.78 True relocation, inconsistency = -41779 49421813 49422368 48874395 48874950 NC_060929.1 CM039038.1 95.32 True indel: indel (<= 5bp) 49422369 49424406 48874952 48876989 NC_060929.1 CM039038.1 98.04 True indel: indel (<= 5bp) 49424857 49426384 48877442 48878969 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = 29556 49456498 49457443 48879527 48880472 NC_060929.1 CM039038.1 97.81 True local misassembly 49456085 49462738 48880473 48887130 NC_060929.1 CM039038.1 97.97 True local misassembly 49457307 49462738 48887131 48892566 NC_060929.1 CM039038.1 98.11 True local misassembly 49463483 49466318 48893310 48896141 NC_060929.1 CM039038.1 98.13 True relocation, inconsistency = -13926 49456085 49459408 48899834 48903157 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = -11208 49448201 49459788 48903158 48914410 NC_060929.1 CM039038.1 95.16 True fake: not a misassembly (possible transposable element) 49361281 49364962 48914411 48918092 NC_060929.1 CM039038.1 98.04 True fake: not a misassembly (possible transposable element) 49458726 49460183 48918104 48919561 NC_060929.1 CM039038.1 98.56 True indel: indel (<= 5bp) 49460184 49461540 48919564 48920920 NC_060929.1 CM039038.1 98.23 True indel: indel (<= 5bp) 49461541 49462503 48920923 48921885 NC_060929.1 CM039038.1 97.91 True relocation, inconsistency = -28868 49433636 49435378 48921886 48923628 NC_060929.1 CM039038.1 98.51 True local misassembly 49435716 49436296 48923629 48924209 NC_060929.1 CM039038.1 95.95 True local misassembly 49443091 49445128 48924210 48926247 NC_060929.1 CM039038.1 97.79 True indel: stretch of mismatches 49445185 49446951 48926304 48928070 NC_060929.1 CM039038.1 98.42 True local misassembly 49447291 49447846 48928071 48928626 NC_060929.1 CM039038.1 95.68 True indel: indel (<= 5bp) 49447847 49448953 48928628 48929734 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 7131 49456085 49462738 48929735 48936388 NC_060929.1 CM039038.1 97.91 True local misassembly 49463016 49466318 48937006 48940304 NC_060929.1 CM039038.1 97.97 True relocation, inconsistency = -9851 49456498 49460161 48940335 48943998 NC_060929.1 CM039038.1 97.81 True local misassembly 49456085 49462738 48943999 48950656 NC_060929.1 CM039038.1 97.79 True local misassembly 49457307 49460929 48950657 48954281 NC_060929.1 CM039038.1 97.93 True local misassembly 49456855 49461518 48954282 48958947 NC_060929.1 CM039038.1 97.95 True local misassembly 49456085 49462724 48958948 48965591 NC_060929.1 CM039038.1 97.79 True local misassembly 49457293 49461518 48965592 48969819 NC_060929.1 CM039038.1 97.79 True local misassembly 49456085 49462724 48969820 48976463 NC_060929.1 CM039038.1 97.77 True local misassembly 49457293 49461518 48976464 48980691 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49462738 48980692 48987347 NC_060929.1 CM039038.1 97.73 True local misassembly 49458666 49462447 48987348 48991133 NC_060929.1 CM039038.1 97.9 True relocation, inconsistency = -30567 49432277 49433579 48991530 48992832 NC_060929.1 CM039038.1 98.23 True indel: stretch of mismatches 49433636 49435388 48992889 48994641 NC_060929.1 CM039038.1 98.29 True indel: indel (<= 5bp) 49435389 49436303 48994644 48995558 NC_060929.1 CM039038.1 98.14 True local misassembly 49437032 49438389 48995947 48997304 NC_060929.1 CM039038.1 98.16 True indel: indel (<= 5bp) 49438391 49440121 48997305 48999035 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = 15963 49456085 49457443 48999036 49000394 NC_060929.1 CM039038.1 97.77 True local misassembly 49456085 49463425 49000395 49007733 NC_060929.1 CM039038.1 97.78 True relocation, inconsistency = -16301 49447329 49454263 49007938 49014877 NC_060929.1 CM039038.1 97.98 True local misassembly 49457322 49461518 49014878 49019076 NC_060929.1 CM039038.1 97.73 True local misassembly 49456085 49462738 49019077 49025734 NC_060929.1 CM039038.1 97.7 True local misassembly 49457307 49461518 49025735 49029948 NC_060929.1 CM039038.1 97.99 True local misassembly 49456085 49462724 49029949 49036592 NC_060929.1 CM039038.1 97.68 True local misassembly 49457293 49461518 49036593 49040820 NC_060929.1 CM039038.1 97.82 True local misassembly 49456085 49458802 49040821 49043538 NC_060929.1 CM039038.1 97.76 True local misassembly 49456085 49463425 49043539 49050877 NC_060929.1 CM039038.1 97.77 True relocation, inconsistency = -21057 49442535 49443090 49051044 49051599 NC_060929.1 CM039038.1 95.5 True indel: indel (<= 5bp) 49443091 49445128 49051601 49053638 NC_060929.1 CM039038.1 98.14 True indel: stretch of mismatches 49445185 49446776 49053695 49055286 NC_060929.1 CM039038.1 97.99 True local misassembly 49447329 49453053 49056176 49061903 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = -17325 49435729 49436975 49061904 49063150 NC_060929.1 CM039038.1 96.35 True indel: stretch of mismatches 49437032 49438334 49063207 49064509 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49438391 49439999 49064566 49066174 NC_060929.1 CM039038.1 98.01 True local misassembly 49447329 49451005 49067047 49070724 NC_060929.1 CM039038.1 97.77 True relocation, scaffold gap is present, inconsistency = -18613 49432690 49433579 49071022 49071911 NC_060929.1 CM039038.1 97.98 True indel: stretch of mismatches 49433636 49435378 49071968 49073710 NC_060929.1 CM039038.1 98.51 True local misassembly 49435716 49436975 49073711 49074970 NC_060929.1 CM039038.1 95.87 True indel: stretch of mismatches 49437032 49438334 49075027 49076329 NC_060929.1 CM039038.1 98.23 True indel: stretch of mismatches 49438391 49440121 49076386 49078116 NC_060929.1 CM039038.1 98.17 True relocation, inconsistency = 15963 49456085 49462738 49078117 49084774 NC_060929.1 CM039038.1 97.9 True local misassembly 49461382 49462453 49084775 49085848 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -29886 49432572 49433256 49085853 49086537 NC_060929.1 CM039038.1 98.13 True local misassembly 49436653 49441094 49086538 49090981 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 14946 49456041 49457015 49090982 49091956 NC_060929.1 CM039038.1 97.54 True indel: stretch of mismatches 49457072 49458374 49092013 49093315 NC_060929.1 CM039038.1 98.23 True local misassembly 49458726 49460183 49093327 49094784 NC_060929.1 CM039038.1 98.63 True indel: indel (<= 5bp) 49460184 49461540 49094787 49096143 NC_060929.1 CM039038.1 98.53 True indel: indel (<= 5bp) 49461541 49462456 49096146 49097061 NC_060929.1 CM039038.1 98.14 True relocation, inconsistency = -109375 49353086 49354485 49097066 49098466 NC_060929.1 CM039038.1 97.79 True local misassembly 49358902 49359568 49098467 49099133 NC_060929.1 CM039038.1 98.77 True local misassembly 49360703 49364962 49100268 49104527 NC_060929.1 CM039038.1 98.03 True relocation, inconsistency = 67598 49432572 49436304 49104539 49108274 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = 7814 49444123 49445128 49108279 49109284 NC_060929.1 CM039038.1 98.11 True indel: stretch of mismatches 49445185 49446951 49109341 49111107 NC_060929.1 CM039038.1 98.42 True local misassembly 49447291 49447846 49111108 49111663 NC_060929.1 CM039038.1 95.68 True indel: indel (<= 5bp) 49447847 49449884 49111665 49113702 NC_060929.1 CM039038.1 97.89 True indel: stretch of mismatches 49449941 49451693 49113759 49115511 NC_060929.1 CM039038.1 98.17 True indel: indel (<= 5bp) 49451694 49453028 49115514 49116848 NC_060929.1 CM039038.1 98.16 True local misassembly 49456085 49462738 49116849 49123506 NC_060929.1 CM039038.1 97.9 True local misassembly 49457307 49460161 49123507 49126361 NC_060929.1 CM039038.1 97.94 True local misassembly 49456085 49460161 49126362 49130438 NC_060929.1 CM039038.1 97.89 True local misassembly 49456085 49462738 49130439 49137096 NC_060929.1 CM039038.1 97.91 True local misassembly 49458666 49462107 49137097 49140541 NC_060929.1 CM039038.1 98.13 True local misassembly 49456085 49461518 49140970 49146404 NC_060929.1 CM039038.1 98.04 True local misassembly 49456085 49462738 49146405 49153062 NC_060929.1 CM039038.1 97.76 True local misassembly 49458666 49461518 49153063 49155917 NC_060929.1 CM039038.1 97.94 True local misassembly 49456085 49461518 49155918 49161353 NC_060929.1 CM039038.1 97.68 True local misassembly 49456085 49463425 49161354 49168692 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = -16301 49447329 49450920 49168897 49172489 NC_060929.1 CM039038.1 97.91 True relocation, inconsistency = -14268 49436653 49450190 49172490 49185683 NC_060929.1 CM039038.1 95.53 True relocation, inconsistency = -2297050 47153141 47155686 49185684 49188225 NC_060929.1 CM039038.1 97.46 True translocation 122143782 122144431 49189603 49190252 NC_060925.1 CM039038.1 97.08 True translocation 49321701 49325522 49191374 49195197 NC_060929.1 CM039038.1 97.72 True relocation, inconsistency = 133160 49458726 49460183 49195241 49196698 NC_060929.1 CM039038.1 98.56 True indel: indel (<= 5bp) 49460184 49461441 49196701 49197958 NC_060929.1 CM039038.1 98.23 True relocation, inconsistency = -2378234 47083208 47087067 49197959 49201814 NC_060929.1 CM039038.1 97.49 True relocation, inconsistency = 2429881 49517345 49519883 49202211 49204748 NC_060929.1 CM039038.1 97.91 True relocation, inconsistency = -72709 49447329 49451298 49204903 49208872 NC_060929.1 CM039038.1 97.83 True fake: not a misassembly (possible transposable element) 49361281 49364962 49208873 49212554 NC_060929.1 CM039038.1 98.09 True fake: not a misassembly (possible transposable element) 49458726 49460161 49212566 49214001 NC_060929.1 CM039038.1 98.56 True local misassembly 49456085 49462724 49214002 49220647 NC_060929.1 CM039038.1 98.0 True local misassembly 49456085 49462738 49220799 49227440 NC_060929.1 CM039038.1 97.7 True local misassembly 49456558 49458802 49227712 49229956 NC_060929.1 CM039038.1 97.69 True local misassembly 49456085 49461518 49229957 49235390 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49461518 49235391 49240824 NC_060929.1 CM039038.1 97.91 True local misassembly 49456085 49462738 49240825 49247482 NC_060929.1 CM039038.1 98.05 True local misassembly 49457307 49461518 49247483 49251694 NC_060929.1 CM039038.1 98.02 True local misassembly 49456085 49462738 49251695 49258352 NC_060929.1 CM039038.1 98.03 True local misassembly 49457307 49461518 49258353 49262566 NC_060929.1 CM039038.1 97.99 True local misassembly 49456085 49462738 49262567 49269224 NC_060929.1 CM039038.1 98.03 True local misassembly 49457307 49462738 49269225 49274660 NC_060929.1 CM039038.1 98.03 True relocation, inconsistency = -8151 49456469 49460161 49276542 49280234 NC_060929.1 CM039038.1 97.82 True local misassembly 49456085 49462738 49280235 49286892 NC_060929.1 CM039038.1 97.87 True local misassembly 49457307 49462185 49286893 49291775 NC_060929.1 CM039038.1 97.92 True local misassembly 49456085 49462738 49292126 49298783 NC_060929.1 CM039038.1 97.85 True local misassembly 49458666 49460161 49298784 49300279 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462738 49300280 49306937 NC_060929.1 CM039038.1 97.9 True local misassembly 49458666 49462146 49306938 49310422 NC_060929.1 CM039038.1 97.99 True local misassembly 49456375 49461518 49310423 49315568 NC_060929.1 CM039038.1 97.58 True local misassembly 49456085 49462738 49315569 49322226 NC_060929.1 CM039038.1 97.94 True local misassembly 49458666 49461518 49322227 49325081 NC_060929.1 CM039038.1 97.91 True local misassembly 49456085 49462738 49325082 49331739 NC_060929.1 CM039038.1 97.87 True local misassembly 49457307 49461518 49331740 49335953 NC_060929.1 CM039038.1 97.82 True local misassembly 49456085 49462738 49335954 49342611 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 49342612 49346825 NC_060929.1 CM039038.1 97.84 True local misassembly 49456085 49461518 49346826 49352261 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462738 49352262 49358922 NC_060929.1 CM039038.1 97.78 True local misassembly 49457307 49461518 49358923 49363136 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462738 49363137 49369794 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49460161 49369795 49372645 NC_060929.1 CM039038.1 97.78 True local misassembly 49456085 49462738 49372646 49379303 NC_060929.1 CM039038.1 97.87 True local misassembly 49457307 49461518 49379304 49383517 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462738 49383518 49390175 NC_060929.1 CM039038.1 97.81 True local misassembly 49457307 49461518 49390176 49394389 NC_060929.1 CM039038.1 97.87 True local misassembly 49456085 49462738 49394390 49401047 NC_060929.1 CM039038.1 97.85 True local misassembly 49457307 49461518 49401048 49405261 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462724 49405262 49411905 NC_060929.1 CM039038.1 97.86 True local misassembly 49458652 49462107 49411906 49415365 NC_060929.1 CM039038.1 97.96 True local misassembly 49456085 49462738 49415794 49422451 NC_060929.1 CM039038.1 97.84 True local misassembly 49461382 49462107 49422452 49423179 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = -74389 49389235 49389938 49424696 49425398 NC_060929.1 CM039038.1 98.02 True relocation, inconsistency = 66916 49456855 49462107 49425399 49430655 NC_060929.1 CM039038.1 97.93 True relocation, inconsistency = -74389 49389235 49391801 49432172 49434740 NC_060929.1 CM039038.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 49434823 49441533 NC_060929.1 CM039038.1 97.84 True local misassembly 49461439 49462737 49441534 49442834 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = -74048 49389235 49391801 49443380 49445948 NC_060929.1 CM039038.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 49446031 49452741 NC_060929.1 CM039038.1 97.84 True local misassembly 49456085 49462107 49452822 49458848 NC_060929.1 CM039038.1 97.76 True relocation, inconsistency = -25132 49437032 49438334 49458905 49460207 NC_060929.1 CM039038.1 98.39 True indel: stretch of mismatches 49438391 49439353 49460264 49461226 NC_060929.1 CM039038.1 98.23 True relocation, inconsistency = 16303 49456085 49462456 49461655 49468030 NC_060929.1 CM039038.1 97.96 True relocation, inconsistency = -31248 49433033 49433579 49469855 49470401 NC_060929.1 CM039038.1 97.26 True indel: stretch of mismatches 49433636 49435388 49470458 49472210 NC_060929.1 CM039038.1 98.06 True indel: indel (<= 5bp) 49435389 49436674 49472213 49473498 NC_060929.1 CM039038.1 97.12 True local misassembly 49431580 49432275 49473499 49474194 NC_060929.1 CM039038.1 98.43 True indel: indel (<= 5bp) 49432277 49433579 49474195 49475497 NC_060929.1 CM039038.1 98.39 True indel: stretch of mismatches 49433636 49435388 49475554 49477306 NC_060929.1 CM039038.1 98.4 True indel: indel (<= 5bp) 49435389 49436674 49477309 49478594 NC_060929.1 CM039038.1 97.05 True local misassembly 49437032 49438334 49479291 49480593 NC_060929.1 CM039038.1 98.39 True indel: stretch of mismatches 49438391 49440143 49480650 49482402 NC_060929.1 CM039038.1 98.29 True indel: indel (<= 5bp) 49440144 49440710 49482405 49482971 NC_060929.1 CM039038.1 98.77 True local misassembly 49436653 49441356 49484008 49488713 NC_060929.1 CM039038.1 97.83 True relocation, inconsistency = -8830 49432527 49433579 49488714 49489766 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49433636 49435388 49489823 49491575 NC_060929.1 CM039038.1 98.23 True indel: indel (<= 5bp) 49435389 49436674 49491578 49492863 NC_060929.1 CM039038.1 97.28 True local misassembly 49437032 49438334 49493560 49494862 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49438391 49440143 49494919 49496671 NC_060929.1 CM039038.1 97.89 True indel: indel (<= 5bp) 49440144 49441106 49496674 49497636 NC_060929.1 CM039038.1 97.69 True relocation, inconsistency = -7471 49433636 49435388 49497637 49499389 NC_060929.1 CM039038.1 98.12 True indel: indel (<= 5bp) 49435389 49436674 49499392 49500677 NC_060929.1 CM039038.1 97.28 True local misassembly 49437032 49438334 49501374 49502676 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49438391 49440121 49502733 49504463 NC_060929.1 CM039038.1 98.12 True relocation, inconsistency = 15963 49456085 49462738 49504464 49511121 NC_060929.1 CM039038.1 97.88 True local misassembly 49458666 49461518 49511122 49513976 NC_060929.1 CM039038.1 97.91 True local misassembly 49456085 49462738 49513977 49520634 NC_060929.1 CM039038.1 97.91 True local misassembly 49457307 49461518 49520635 49524848 NC_060929.1 CM039038.1 97.9 True local misassembly 49456085 49462738 49524849 49531506 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 49531507 49535720 NC_060929.1 CM039038.1 97.9 True local misassembly 49456085 49462738 49535721 49542378 NC_060929.1 CM039038.1 97.84 True local misassembly 49457307 49461518 49542379 49546592 NC_060929.1 CM039038.1 97.84 True local misassembly 49456085 49462738 49546593 49553250 NC_060929.1 CM039038.1 97.82 True local misassembly 49460025 49462107 49553251 49555337 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = -15961 49447329 49454263 49556520 49563459 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 7133 49461397 49462575 49563460 49564640 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = -121603 49342981 49344720 49566649 49568387 NC_060929.1 CM039038.1 98.45 True relocation, inconsistency = -2248812 47098676 47099414 49571155 49571893 NC_060929.1 CM039038.1 97.97 True indel: indel (<= 5bp) 47099416 47100273 49571894 49572751 NC_060929.1 CM039038.1 98.44 True relocation, inconsistency = 2355811 49456085 49460701 49572752 49577370 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = -14604 49447329 49454264 49578602 49585542 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = 7133 49461398 49462107 49585543 49586254 NC_060929.1 CM039038.1 98.01 True local misassembly 49456085 49462724 49586683 49593326 NC_060929.1 CM039038.1 97.83 True local misassembly 49458652 49461518 49593327 49596195 NC_060929.1 CM039038.1 97.86 True local misassembly 49456085 49462107 49596196 49602220 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 65583 49528934 49529786 49603464 49604316 NC_060929.1 CM039038.1 97.77 True relocation, inconsistency = -83925 49447343 49454263 49605798 49612722 NC_060929.1 CM039038.1 97.91 True relocation, inconsistency = 7133 49461397 49462738 49612723 49614066 NC_060929.1 CM039038.1 98.02 True relocation, inconsistency = -96804 49366362 49368033 49614494 49616165 NC_060929.1 CM039038.1 97.73 True relocation, inconsistency = 88654 49457072 49457907 49616550 49617385 NC_060929.1 CM039038.1 98.56 True local misassembly 49458431 49460183 49617569 49619321 NC_060929.1 CM039038.1 98.12 True indel: indel (<= 5bp) 49460184 49460789 49619324 49619929 NC_060929.1 CM039038.1 98.02 True local misassembly 49456375 49460161 49619930 49623716 NC_060929.1 CM039038.1 97.85 True local misassembly 49456085 49462738 49623717 49630374 NC_060929.1 CM039038.1 97.87 True local misassembly 49457307 49462107 49630375 49635179 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = -25132 49437032 49438334 49635236 49636538 NC_060929.1 CM039038.1 98.31 True indel: stretch of mismatches 49438391 49440143 49636595 49638347 NC_060929.1 CM039038.1 98.12 True indel: indel (<= 5bp) 49440144 49440710 49638350 49638916 NC_060929.1 CM039038.1 98.41 True local misassembly 49436653 49440121 49639953 49643421 NC_060929.1 CM039038.1 98.09 True relocation, inconsistency = 15963 49456085 49462456 49643422 49649797 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = -29887 49432572 49436034 49649800 49653264 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = 20041 49456085 49462738 49653274 49659931 NC_060929.1 CM039038.1 97.87 True local misassembly 49460025 49461518 49659932 49661427 NC_060929.1 CM039038.1 97.88 True local misassembly 49456085 49462738 49661428 49668085 NC_060929.1 CM039038.1 97.88 True relocation, inconsistency = -30227 49432512 49435906 49668086 49671482 NC_060929.1 CM039038.1 98.07 True relocation, inconsistency = -1277700 48159093 48159612 49672369 49672888 NC_060929.1 CM039038.1 97.88 True relocation, inconsistency = 1243051 49404211 49405383 49674436 49675608 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = 165474 49573928 49575071 49678679 49679822 NC_060929.1 CM039038.1 97.21 True relocation, inconsistency = -285046 49291098 49291634 49680895 49681432 NC_060929.1 CM039038.1 97.4 True relocation, inconsistency = 224218 49517172 49518648 49682752 49684224 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = -62181 49456525 49458123 49684282 49685880 NC_060929.1 CM039038.1 97.69 True relocation, inconsistency = -60128 49399962 49402673 49687847 49690542 NC_060929.1 CM039038.1 96.79 True relocation, inconsistency = 37027 49444804 49446257 49695646 49697099 NC_060929.1 CM039038.1 97.8 True fake: not a misassembly (possible transposable element) 49496565 49498886 49698143 49700460 NC_060929.1 CM039038.1 98.28 True fake: not a misassembly (possible transposable element) 49450313 49450980 49701152 49701819 NC_060929.1 CM039038.1 98.05 True relocation, inconsistency = -8830 49443091 49444050 49702760 49703719 NC_060929.1 CM039038.1 98.75 True indel: indel (<= 5bp) 49444055 49444871 49703720 49704536 NC_060929.1 CM039038.1 98.16 True local misassembly 49445212 49446257 49704537 49705582 NC_060929.1 CM039038.1 98.37 True local misassembly 49447322 49449684 49706648 49709006 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = 123689 49576720 49577450 49712353 49713083 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = -2452324 47126361 47126874 49714318 49714831 NC_060929.1 CM039038.1 96.89 True local misassembly 47127215 47127953 49714832 49715570 NC_060929.1 CM039038.1 97.83 True indel: indel (<= 5bp) 47127955 47129044 49715571 49716660 NC_060929.1 CM039038.1 98.72 True local misassembly 47127215 47127953 49719927 49720665 NC_060929.1 CM039038.1 97.97 True indel: indel (<= 5bp) 47127955 47129044 49720666 49721755 NC_060929.1 CM039038.1 98.62 True local misassembly 47127215 47127953 49725022 49725760 NC_060929.1 CM039038.1 98.11 True indel: indel (<= 5bp) 47127955 47129044 49725761 49726850 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = 1658023 48791324 48792995 49731107 49732777 NC_060929.1 CM039038.1 97.61 True relocation, inconsistency = 552400 49348668 49350461 49736050 49737843 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = 199429 49551019 49551774 49738972 49739723 NC_060929.1 CM039038.1 98.41 True fake: not a misassembly (possible transposable element) 49501543 49502172 49739788 49740418 NC_060929.1 CM039038.1 96.99 True fake: not a misassembly (possible transposable element) 49551019 49553277 49741687 49743941 NC_060929.1 CM039038.1 98.63 True relocation, inconsistency = -134546 49421844 49424206 49747054 49749413 NC_060929.1 CM039038.1 98.05 True relocation, inconsistency = -1249507 48176201 48177283 49750915 49751997 NC_060929.1 CM039038.1 98.34 True relocation, inconsistency = 1172402 49351847 49353861 49754159 49756169 NC_060929.1 CM039038.1 98.21 True local misassembly 49356142 49357628 49758447 49759928 NC_060929.1 CM039038.1 98.52 True relocation, inconsistency = -12229 49346499 49347376 49761028 49761905 NC_060929.1 CM039038.1 98.97 True relocation, inconsistency = 222537 49574385 49577450 49766377 49769434 NC_060929.1 CM039038.1 97.0 True relocation, inconsistency = -151886 49426664 49427510 49770534 49771380 NC_060929.1 CM039038.1 97.99 True relocation, inconsistency = -96125 49342133 49342681 49782128 49782676 NC_060929.1 CM039038.1 97.09 True relocation, inconsistency = 14953 49361836 49363403 49786878 49788445 NC_060929.1 CM039038.1 97.26 True relocation, inconsistency = 189919 49553656 49556670 49788779 49791784 NC_060929.1 CM039038.1 97.71 True relocation, inconsistency = -159352 49398469 49399249 49792935 49793715 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = 90710 49494548 49496911 49798304 49800666 NC_060929.1 CM039038.1 98.77 True relocation, inconsistency = -51983 49445566 49446257 49801304 49801995 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -597565 48855139 48856450 49808442 49809752 NC_060929.1 CM039038.1 98.55 True relocation, inconsistency = 718200 49575645 49577420 49810747 49812521 NC_060929.1 CM039038.1 98.82 True relocation, inconsistency = -252776 49325090 49327392 49812967 49815270 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 245308 49575645 49577420 49818215 49819989 NC_060929.1 CM039038.1 98.7 True relocation, inconsistency = -256172 49321694 49323996 49820435 49822738 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 241909 49570214 49570986 49827047 49827820 NC_060929.1 CM039038.1 97.15 True relocation, inconsistency = -259567 49311420 49313117 49827821 49829515 NC_060929.1 CM039038.1 98.12 True relocation, inconsistency = 124669 49437810 49439404 49829539 49831133 NC_060929.1 CM039038.1 97.93 True relocation, inconsistency = -2185278 47257657 47258519 49834664 49835522 NC_060929.1 CM039038.1 97.33 True relocation, inconsistency = 2290616 49550006 49551147 49836393 49837530 NC_060929.1 CM039038.1 97.9 True relocation, inconsistency = -191278 49360703 49362007 49838364 49839668 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 85599 49449360 49451013 49841422 49843075 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = -43822 49408937 49411254 49844821 49847139 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = 70996 49484011 49486374 49848900 49851263 NC_060929.1 CM039038.1 98.48 True relocation, inconsistency = -2229107 47257657 47258519 49851653 49852511 NC_060929.1 CM039038.1 97.57 True relocation, inconsistency = 1127048 48386353 48387918 49853297 49854859 NC_060929.1 CM039038.1 98.15 True relocation, inconsistency = 968218 49358395 49359628 49857118 49858351 NC_060929.1 CM039038.1 98.7 True relocation, inconsistency = -2102398 47257657 47258519 49858778 49859636 NC_060929.1 CM039038.1 97.68 True relocation, inconsistency = 1127048 48386353 48387918 49860422 49861984 NC_060929.1 CM039038.1 98.09 True relocation, inconsistency = 966179 49356039 49357628 49863926 49865515 NC_060929.1 CM039038.1 98.62 True local misassembly 49358395 49359628 49866284 49867517 NC_060929.1 CM039038.1 98.62 True relocation, inconsistency = -2102398 47257657 47258519 49867944 49868802 NC_060929.1 CM039038.1 97.57 True relocation, inconsistency = 1127048 48386353 48387918 49869588 49871150 NC_060929.1 CM039038.1 98.02 True relocation, inconsistency = 968216 49358395 49359628 49873411 49874644 NC_060929.1 CM039038.1 98.7 True indel: stretch of mismatches 49360010 49361947 49875026 49876963 NC_060929.1 CM039038.1 98.14 True relocation, inconsistency = -1212475 48150447 48151749 49877938 49879240 NC_060929.1 CM039038.1 97.24 True local misassembly 48151784 48152482 49879612 49880310 NC_060929.1 CM039038.1 96.28 True relocation, inconsistency = 1163219 49316089 49318191 49880698 49882800 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = 113461 49434017 49434708 49885165 49885856 NC_060929.1 CM039038.1 97.98 True relocation, inconsistency = -75073 49359999 49362007 49886220 49888227 NC_060929.1 CM039038.1 98.66 True local misassembly 49359999 49362007 49888598 49890605 NC_060929.1 CM039038.1 98.71 True local misassembly 49358935 49359594 49891270 49891928 NC_060929.1 CM039038.1 98.03 True indel: stretch of mismatches 49359999 49361973 49892333 49894306 NC_060929.1 CM039038.1 98.73 True local misassembly 49358995 49359594 49896763 49897362 NC_060929.1 CM039038.1 98.33 True indel: stretch of mismatches 49359999 49362007 49897767 49899774 NC_060929.1 CM039038.1 98.61 True local misassembly 49362746 49363403 49900508 49901165 NC_060929.1 CM039038.1 97.42 True local misassembly 49359999 49361977 49901499 49903476 NC_060929.1 CM039038.1 98.74 True local misassembly 49362746 49363403 49904240 49904897 NC_060929.1 CM039038.1 97.42 True local misassembly 49359999 49361985 49905231 49907216 NC_060929.1 CM039038.1 98.74 True local misassembly 49360095 49362007 49907705 49909617 NC_060929.1 CM039038.1 98.07 True local misassembly 49360985 49362007 49911987 49913008 NC_060929.1 CM039038.1 98.63 True relocation, inconsistency = -45179 49317875 49319448 49914055 49915624 NC_060929.1 CM039038.1 97.59 True relocation, inconsistency = 235442 49555409 49556676 49916143 49917410 NC_060929.1 CM039038.1 98.9 True relocation, inconsistency = -7478 49550977 49553277 49919189 49921489 NC_060929.1 CM039038.1 98.52 True relocation, inconsistency = -254120 49309463 49311766 49931795 49934098 NC_060929.1 CM039038.1 97.92 True relocation, inconsistency = 41788 49356741 49357598 49937285 49938142 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = -661107 48697727 48698348 49939378 49939999 NC_060929.1 CM039038.1 98.55 True local misassembly 48698689 48699822 49940000 49941133 NC_060929.1 CM039038.1 96.47 True relocation, inconsistency = 809225 49510066 49511859 49942152 49943945 NC_060929.1 CM039038.1 98.72 True relocation, inconsistency = -198052 49314955 49315812 49945093 49945950 NC_060929.1 CM039038.1 98.6 True relocation, inconsistency = 258549 49574385 49575071 49945974 49946660 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -1213183 48362462 48364267 49947234 49949039 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = 995398 49360294 49362007 49949668 49951381 NC_060929.1 CM039038.1 98.66 True relocation, inconsistency = 210989 49573928 49575071 49952313 49953457 NC_060929.1 CM039038.1 97.03 True relocation, inconsistency = -322079 49253884 49255337 49954349 49955802 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = 46211 49304670 49305973 49958924 49960227 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = 237140 49544228 49545369 49961342 49962479 NC_060929.1 CM039038.1 97.99 True fake: not a misassembly (possible transposable element) 49257059 49258764 49962949 49964654 NC_060929.1 CM039038.1 98.24 True fake: not a misassembly (possible transposable element) 49544178 49545369 49966387 49967574 NC_060929.1 CM039038.1 97.82 True local misassembly 49554558 49556676 49971665 49973779 NC_060929.1 CM039038.1 98.63 True relocation, inconsistency = 16315 49574064 49575071 49974852 49975856 NC_060929.1 CM039038.1 97.22 True relocation, inconsistency = -116554 49459409 49460822 49976748 49978161 NC_060929.1 CM039038.1 98.23 True relocation, inconsistency = 88017 49550006 49551147 49979328 49980465 NC_060929.1 CM039038.1 97.9 True fake: not a misassembly (possible transposable element) 49257059 49258764 49980935 49982640 NC_060929.1 CM039038.1 98.24 True fake: not a misassembly (possible transposable element) 49549956 49551147 49984373 49985560 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -294558 49257059 49258764 49986030 49987735 NC_060929.1 CM039038.1 98.18 True relocation, inconsistency = -402230 48857097 48858235 49988298 49989436 NC_060929.1 CM039038.1 97.81 True relocation, inconsistency = 715478 49573802 49575143 49989525 49990863 NC_060929.1 CM039038.1 97.47 True relocation, inconsistency = -24124 49551839 49553277 49991683 49993121 NC_060929.1 CM039038.1 98.61 True fake: not a misassembly (possible transposable element) 49544178 49545369 49993539 49994726 NC_060929.1 CM039038.1 97.82 True fake: not a misassembly (possible transposable element) 49555238 49556676 49995418 49996856 NC_060929.1 CM039038.1 98.61 True relocation, inconsistency = -268733 49290916 49293041 49999829 50001955 NC_060929.1 CM039038.1 97.09 True relocation, inconsistency = 278943 49573928 49575071 50003899 50005043 NC_060929.1 CM039038.1 97.47 True relocation, inconsistency = -253450 49322169 49323966 50005591 50007388 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = -1176120 48151844 48153172 50011386 50012714 NC_060929.1 CM039038.1 97.89 True relocation, inconsistency = 1401718 49555238 49556676 50013062 50014500 NC_060929.1 CM039038.1 98.68 True relocation, inconsistency = -269076 49290173 49291010 50017073 50017910 NC_060929.1 CM039038.1 97.97 True relocation, inconsistency = 145055 49436653 49438134 50018498 50019979 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -18006 49421844 49424161 50021695 50024009 NC_060929.1 CM039038.1 98.1 True fake: not a misassembly (possible transposable element) 48325894 48326539 50025769 50026414 NC_060929.1 CM039038.1 98.61 True fake: not a misassembly (possible transposable element) 49433089 49434677 50026480 50028068 NC_060929.1 CM039038.1 97.74 True relocation, inconsistency = 114165 49549956 49551147 50029182 50030369 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -71026 49480813 49482296 50031061 50032544 NC_060929.1 CM039038.1 98.58 True relocation, inconsistency = 87688 49573928 49575071 50036488 50037632 NC_060929.1 CM039038.1 97.47 True relocation, inconsistency = -97188 49478365 49480242 50038114 50039989 NC_060929.1 CM039038.1 98.35 True relocation, inconsistency = -44163 49436822 49438134 50040732 50042044 NC_060929.1 CM039038.1 98.55 True relocation, inconsistency = -2142789 47300613 47302410 50047312 50049107 NC_060929.1 CM039038.1 98.44 True fake: not a misassembly (possible transposable element) 49574330 49575071 50049108 50049849 NC_060929.1 CM039038.1 97.06 True fake: not a misassembly (possible transposable element) 47300445 47302410 50050201 50052160 NC_060929.1 CM039038.1 98.17 True relocation, inconsistency = 2271919 49574330 49575071 50052161 50052902 NC_060929.1 CM039038.1 97.06 True relocation, inconsistency = -217783 49357640 49359628 50053254 50055238 NC_060929.1 CM039038.1 98.04 True local misassembly 49360735 49362007 50056341 50057613 NC_060929.1 CM039038.1 98.66 True relocation, inconsistency = -1220285 48145050 48146425 50060941 50062316 NC_060929.1 CM039038.1 97.53 True relocation, inconsistency = 1201607 49348199 49350465 50062483 50064750 NC_060929.1 CM039038.1 98.37 True local misassembly 49351603 49353861 50065886 50068141 NC_060929.1 CM039038.1 98.05 True relocation, inconsistency = 218129 49573928 49575071 50070079 50071223 NC_060929.1 CM039038.1 97.38 True fake: not a misassembly (possible transposable element) 47300445 47302410 50071575 50073534 NC_060929.1 CM039038.1 98.17 True fake: not a misassembly (possible transposable element) 49574330 49575071 50073535 50074276 NC_060929.1 CM039038.1 97.06 True relocation, inconsistency = -217783 49357640 49359628 50074628 50076612 NC_060929.1 CM039038.1 98.04 True local misassembly 49360735 49362007 50077715 50078987 NC_060929.1 CM039038.1 98.66 True relocation, inconsistency = -1213491 48151844 48153219 50082315 50083690 NC_060929.1 CM039038.1 97.17 True relocation, inconsistency = 1168314 49321700 49323966 50083857 50086124 NC_060929.1 CM039038.1 98.37 True local misassembly 49325104 49327362 50087260 50089515 NC_060929.1 CM039038.1 98.05 True relocation, inconsistency = 244628 49573928 49575071 50091453 50092597 NC_060929.1 CM039038.1 97.38 True relocation, inconsistency = -125044 49451083 49452370 50093653 50094942 NC_060929.1 CM039038.1 98.37 True relocation, inconsistency = 117588 49573928 49575071 50098912 50100056 NC_060929.1 CM039038.1 97.29 True relocation, inconsistency = -24128 49551295 49553277 50100408 50102386 NC_060929.1 CM039038.1 98.49 True fake: not a misassembly (possible transposable element) 49544228 49545369 50103530 50104667 NC_060929.1 CM039038.1 97.81 True fake: not a misassembly (possible transposable element) 49555238 49556676 50105359 50106797 NC_060929.1 CM039038.1 98.61 True relocation, inconsistency = -246312 49312917 49313774 50109350 50110207 NC_060929.1 CM039038.1 98.72 True local misassembly 49314501 49315842 50110935 50112276 NC_060929.1 CM039038.1 98.81 True relocation, inconsistency = -1133671 48184353 48185028 50114458 50115133 NC_060929.1 CM039038.1 99.26 True relocation, inconsistency = 1145566 49331016 49332089 50115555 50116628 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = -1187674 48145050 48145745 50117263 50117958 NC_060929.1 CM039038.1 97.41 True relocation, inconsistency = 1427882 49574405 49575071 50118736 50119398 NC_060929.1 CM039038.1 97.0 True relocation, inconsistency = -2271913 47304053 47304765 50120293 50121005 NC_060929.1 CM039038.1 97.48 True relocation, inconsistency = 2003858 49310288 49311766 50122670 50124148 NC_060929.1 CM039038.1 98.24 True fake: not a misassembly (possible transposable element) 48697627 48698416 50124578 50125367 NC_060929.1 CM039038.1 98.35 True fake: not a misassembly (possible transposable element) 49314501 49315842 50128241 50129582 NC_060929.1 CM039038.1 98.96 True fake: not a misassembly (possible transposable element) 48784937 48785726 50130012 50130801 NC_060929.1 CM039038.1 98.35 True fake: not a misassembly (possible transposable element) 49314501 49315842 50133675 50135016 NC_060929.1 CM039038.1 98.81 True relocation, inconsistency = -65233 49253881 49255367 50138288 50139774 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = 185482 49443616 49444928 50142541 50143853 NC_060929.1 CM039038.1 98.63 True fake: not a misassembly (possible transposable element) 48924221 48925404 50144283 50145467 NC_060929.1 CM039038.1 97.38 True fake: not a misassembly (possible transposable element) 49442566 49444241 50145568 50147244 NC_060929.1 CM039038.1 98.33 True relocation, inconsistency = -1121771 48322778 48323829 50147552 50148599 NC_060929.1 CM039038.1 96.77 True relocation, inconsistency = 228984 48558595 48560161 50154381 50155947 NC_060929.1 CM039038.1 98.92 True relocation, inconsistency = 796997 49358778 49359628 50157567 50158417 NC_060929.1 CM039038.1 98.59 True local misassembly 49360294 49362007 50159083 50160795 NC_060929.1 CM039038.1 98.42 True relocation, inconsistency = 183133 49554689 49556676 50170344 50172327 NC_060929.1 CM039038.1 97.94 True relocation, inconsistency = -208264 49352408 49353891 50176323 50177806 NC_060929.1 CM039038.1 98.38 True relocation, inconsistency = 188554 49544178 49545369 50179539 50180726 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -88011 49457917 49459503 50181285 50182871 NC_060929.1 CM039038.1 97.92 True relocation, inconsistency = 38734 49500649 49502172 50185283 50186807 NC_060929.1 CM039038.1 97.25 True local misassembly 49500931 49502172 50188281 50189519 NC_060929.1 CM039038.1 97.1 True relocation, inconsistency = -14949 49490014 49491292 50192310 50193584 NC_060929.1 CM039038.1 97.58 True relocation, inconsistency = 23783 49515677 49517250 50194186 50195759 NC_060929.1 CM039038.1 98.35 True relocation, inconsistency = -58441 49459433 49460829 50196383 50197781 NC_060929.1 CM039038.1 98.14 True relocation, inconsistency = -129078 49334276 49335852 50200306 50201882 NC_060929.1 CM039038.1 97.21 True relocation, inconsistency = 238511 49576141 49577416 50203660 50204935 NC_060929.1 CM039038.1 98.75 True relocation, inconsistency = -77142 49500658 49502172 50205319 50206830 NC_060929.1 CM039038.1 96.9 True relocation, inconsistency = -1782915 47720350 47721669 50207923 50209242 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = 1850545 49575496 49577450 50212524 50214478 NC_060929.1 CM039038.1 98.62 True relocation, inconsistency = -1086461 48491563 48493350 50215052 50216839 NC_060929.1 CM039038.1 98.55 True relocation, inconsistency = -1456591 47041432 47042764 50221512 50222844 NC_060929.1 CM039038.1 97.3 True relocation, inconsistency = 2440425 49483265 49484535 50222920 50224189 NC_060929.1 CM039038.1 98.27 True relocation, inconsistency = 89716 49574385 49575071 50224323 50225009 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -171927 49403718 49405383 50225583 50227248 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = 70998 49477164 49478853 50228031 50229720 NC_060929.1 CM039038.1 97.63 True relocation, inconsistency = -179364 49300113 49300785 50230344 50231016 NC_060929.1 CM039038.1 97.62 True relocation, inconsistency = 113463 49417690 49419050 50234458 50235817 NC_060929.1 CM039038.1 97.43 True relocation, inconsistency = 132864 49560640 49561986 50244543 50245891 NC_060929.1 CM039038.1 97.92 True relocation, inconsistency = -1843742 47720350 47721620 50247997 50249267 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = 1693566 49417690 49419050 50251771 50253130 NC_060929.1 CM039038.1 97.5 True relocation, inconsistency = -1550861 47868190 47869155 50253131 50254097 NC_060929.1 CM039038.1 97.87 True relocation, inconsistency = -824338 47046254 47048763 50255534 50258042 NC_060929.1 CM039038.1 98.29 True relocation, inconsistency = 2376218 49425463 49426499 50258524 50259560 NC_060929.1 CM039038.1 97.3 True indel: indel (<= 5bp) 49426501 49427803 50259561 50260863 NC_060929.1 CM039038.1 97.62 True local misassembly 49428023 49428822 50261422 50262221 NC_060929.1 CM039038.1 98.75 True relocation, inconsistency = 95134 49525760 49528766 50264025 50267032 NC_060929.1 CM039038.1 97.31 True relocation, inconsistency = -63205 49466541 49467213 50268012 50268684 NC_060929.1 CM039038.1 96.58 True relocation, inconsistency = -111755 49359999 49362007 50273225 50275229 NC_060929.1 CM039038.1 98.16 True relocation, inconsistency = 81188 49445193 49446257 50277227 50278291 NC_060929.1 CM039038.1 98.59 True relocation, inconsistency = 103636 49551019 49553277 50279417 50281672 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = -1236620 48317130 48319081 50282145 50284092 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = 1040584 49359999 49362007 50284426 50286430 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = 120931 49483989 49486374 50287481 50289862 NC_060929.1 CM039038.1 97.69 True relocation, inconsistency = -42461 49445193 49446257 50291142 50292206 NC_060929.1 CM039038.1 98.5 True relocation, inconsistency = 100577 49548231 49550263 50293603 50295631 NC_060929.1 CM039038.1 98.13 True relocation, inconsistency = -2143108 47408047 47408766 50296523 50297242 NC_060929.1 CM039038.1 97.36 True relocation, inconsistency = 1841767 49253896 49255367 50300605 50302076 NC_060929.1 CM039038.1 97.83 True relocation, inconsistency = 97505 49352873 49353850 50302077 50303054 NC_060929.1 CM039038.1 98.77 True relocation, inconsistency = -61832 49292019 49293041 50303055 50304077 NC_060929.1 CM039038.1 97.95 True relocation, inconsistency = 254466 49548780 49550263 50305350 50306829 NC_060929.1 CM039038.1 97.64 True relocation, inconsistency = -11213 49542480 49544485 50310259 50312260 NC_060929.1 CM039038.1 98.21 True relocation, inconsistency = -223543 49321518 49323996 50312836 50315311 NC_060929.1 CM039038.1 97.7 True relocation, inconsistency = -2067409 47257657 47258519 50316381 50317239 NC_060929.1 CM039038.1 97.8 True relocation, inconsistency = 2224688 49484013 49486374 50318045 50320402 NC_060929.1 CM039038.1 97.84 True fake: not a misassembly (possible transposable element) 49445193 49446257 50321683 50322747 NC_060929.1 CM039038.1 98.5 True fake: not a misassembly (possible transposable element) 49492487 49496290 50323791 50327586 NC_060929.1 CM039038.1 98.21 True relocation, inconsistency = 48933 49545241 49547275 50327604 50329634 NC_060929.1 CM039038.1 98.67 True relocation, inconsistency = 39436 49590989 49592239 50333912 50335162 NC_060929.1 CM039038.1 97.12 True relocation, inconsistency = -248007 49348193 49350495 50339123 50341425 NC_060929.1 CM039038.1 97.87 True local misassembly 49349904 49350465 50344909 50345470 NC_060929.1 CM039038.1 99.47 True relocation, inconsistency = 132480 49484011 49486374 50346536 50348895 NC_060929.1 CM039038.1 98.01 True relocation, inconsistency = 98229 49590989 49592262 50355281 50356554 NC_060929.1 CM039038.1 96.55 True local misassembly 49590989 49592502 50357651 50359165 NC_060929.1 CM039038.1 95.91 True relocation, inconsistency = -13208 49590333 49591040 50370204 50370910 NC_060929.1 CM039038.1 97.04 True fake: not a misassembly (possible transposable element) 28888472 28889805 50371875 50373201 NC_060943.1 CM039038.1 95.58 True fake: not a misassembly (possible transposable element) 49590989 49592262 50375593 50376866 NC_060929.1 CM039038.1 96.55 True local misassembly 49590989 49592502 50377963 50379477 NC_060929.1 CM039038.1 95.84 True local misassembly 49590989 49592236 50384068 50385316 NC_060929.1 CM039038.1 95.92 True relocation, inconsistency = -7103 49590333 49591040 50390516 50391222 NC_060929.1 CM039038.1 97.04 True local misassembly 49588199 49588701 50393125 50393626 NC_060929.1 CM039038.1 97.22 True relocation, inconsistency = -18300 49594999 49595644 50418224 50418869 NC_060929.1 CM039038.1 96.13 True local misassembly 49595945 49596464 50419851 50420370 NC_060929.1 CM039038.1 97.31 True indel: indel (<= 5bp) 49596765 49598312 50420669 50422216 NC_060929.1 CM039038.1 98.51 True indel: stretch of mismatches 49598794 49599457 50422698 50423361 NC_060929.1 CM039038.1 99.1 True local misassembly 49600666 49601235 50424655 50425224 NC_060929.1 CM039038.1 98.42 True indel: indel (<= 5bp) 49601236 49601746 50425230 50425740 NC_060929.1 CM039038.1 98.24 True indel: indel (> 5bp) 49601747 49602395 50425756 50426404 NC_060929.1 CM039038.1 98.46 True local misassembly 49607471 49608015 50427475 50428019 NC_060929.1 CM039038.1 97.61 True relocation, inconsistency = -9986 49600451 49600969 50430441 50430959 NC_060929.1 CM039038.1 98.27 True local misassembly 49601750 49602390 50431775 50432415 NC_060929.1 CM039038.1 98.75 True local misassembly 49607471 49608015 50433485 50434029 NC_060929.1 CM039038.1 97.25 True relocation, inconsistency = -53550 49615227 49615751 50494791 50495315 NC_060929.1 CM039038.1 98.67 True relocation, inconsistency = -27003 49619061 49619597 50525628 50526164 NC_060929.1 CM039038.1 98.7 True local misassembly 49619801 49620525 50526228 50526952 NC_060929.1 CM039038.1 98.48 True indel: indel (> 5bp) 49620916 49621475 50527318 50527877 NC_060929.1 CM039038.1 99.29 True local misassembly 49634229 49634948 50541001 50541735 NC_060929.1 CM039038.1 96.19 True relocation, inconsistency = -22917 49619061 49619597 50548765 50549301 NC_060929.1 CM039038.1 98.51 True local misassembly 49619801 49620525 50549365 50550089 NC_060929.1 CM039038.1 98.48 True indel: indel (> 5bp) 49620916 49621475 50550455 50551014 NC_060929.1 CM039038.1 99.29 True relocation, inconsistency = -11259 49619781 49620555 50560579 50561353 NC_060929.1 CM039038.1 98.06 True indel: indel (<= 5bp) 49620708 49621489 50561501 50562282 NC_060929.1 CM039038.1 99.23 True local misassembly 49633978 49634569 50569214 50569805 NC_060929.1 CM039038.1 97.47 True relocation, inconsistency = -20267 49620698 49621475 50576201 50576978 NC_060929.1 CM039038.1 99.1 True relocation, inconsistency = -30223 49619061 49619597 50604787 50605323 NC_060929.1 CM039038.1 98.51 True local misassembly 49619801 49620525 50605387 50606111 NC_060929.1 CM039038.1 98.48 True indel: indel (> 5bp) 49620916 49621475 50606477 50607036 NC_060929.1 CM039038.1 99.29 True relocation, inconsistency = -11244 49619786 49620489 50616591 50617294 NC_060929.1 CM039038.1 98.01 True indel: indel (<= 5bp) 49620708 49621489 50617508 50618289 NC_060929.1 CM039038.1 99.23 True local misassembly 49619851 49620489 50623318 50623956 NC_060929.1 CM039038.1 98.28 True indel: indel (> 5bp) 49620708 49621489 50624135 50624916 NC_060929.1 CM039038.1 98.98 True relocation, inconsistency = 11336 49642143 49642707 50634234 50634798 NC_060929.1 CM039038.1 99.12 True local misassembly 49644024 49644702 50636150 50636828 NC_060929.1 CM039038.1 99.12 True relocation, inconsistency = 93352 49767051 49767770 50665825 50666544 NC_060929.1 CM039038.1 98.75 True fake: not a misassembly (possible transposable element) 49779943 49780951 50669187 50670195 NC_060929.1 CM039038.1 98.02 True fake: not a misassembly (possible transposable element) 49774526 49775302 50673682 50674458 NC_060929.1 CM039038.1 98.07 True local misassembly 49777941 49778574 50677199 50677832 NC_060929.1 CM039038.1 99.21 True local misassembly 49779945 49780585 50679132 50679772 NC_060929.1 CM039038.1 97.66 True local misassembly 49782636 49783224 50681334 50681922 NC_060929.1 CM039038.1 98.47 True local misassembly 49784358 49784949 50683091 50683682 NC_060929.1 CM039038.1 98.14 True local misassembly 49791425 49791967 50690005 50690547 NC_060929.1 CM039038.1 96.87 True relocation, inconsistency = -37009 49761905 49762508 50697494 50698097 NC_060929.1 CM039038.1 97.68 True indel: indel (> 5bp) 49762880 49763520 50698534 50699174 NC_060929.1 CM039038.1 98.75 True local misassembly 49767056 49767825 50703329 50704098 NC_060929.1 CM039038.1 98.31 True relocation, inconsistency = 9560 49779938 49780504 50706651 50707217 NC_060929.1 CM039038.1 98.77 True local misassembly 49777941 49778574 50711644 50712277 NC_060929.1 CM039038.1 98.74 True indel: indel (<= 5bp) 49779016 49779610 50712724 50713318 NC_060929.1 CM039038.1 98.66 True indel: indel (> 5bp) 49779943 49780504 50713586 50714147 NC_060929.1 CM039038.1 98.22 True local misassembly 49782636 49783224 50715820 50716408 NC_060929.1 CM039038.1 98.13 True local misassembly 49784213 49784949 50717362 50718098 NC_060929.1 CM039038.1 98.51 True local misassembly 49786446 49786970 50722115 50722639 NC_060929.1 CM039038.1 97.71 True local misassembly 49787705 49788234 50723369 50723898 NC_060929.1 CM039038.1 98.68 True local misassembly 49800504 49801012 50731074 50731582 NC_060929.1 CM039038.1 98.43 True relocation, inconsistency = -8261 49795725 49796315 50734556 50735146 NC_060929.1 CM039038.1 98.98 True local misassembly 49795761 49796331 50736915 50737485 NC_060929.1 CM039038.1 98.42 True relocation, inconsistency = 36277 49856477 49857287 50761354 50762164 NC_060929.1 CM039038.1 98.64 True local misassembly 49860381 49860892 50765182 50765693 NC_060929.1 CM039038.1 99.02 True local misassembly 49861749 49862407 50766460 50767118 NC_060929.1 CM039038.1 97.72 True local misassembly 49870905 49871434 50775250 50775779 NC_060929.1 CM039038.1 97.92 True local misassembly 49879385 49880172 50782197 50782979 NC_060929.1 CM039038.1 95.59 True relocation, inconsistency = -13558 49870905 49871434 50787270 50787799 NC_060929.1 CM039038.1 97.92 True local misassembly 49882064 49882569 50802603 50803108 NC_060929.1 CM039038.1 99.01 True local misassembly 49893093 49893616 50808423 50808946 NC_060929.1 CM039038.1 98.09 True local misassembly 49890612 49891252 50812049 50812679 NC_060929.1 CM039038.1 96.57 True local misassembly 49892200 49894280 50813522 50815582 NC_060929.1 CM039038.1 95.48 True local misassembly 49899502 49900026 50820559 50821083 NC_060929.1 CM039038.1 97.52 True local misassembly 49902869 49903465 50823772 50824368 NC_060929.1 CM039038.1 97.82 True local misassembly 49902869 49903465 50826670 50827266 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -12065 49893093 49893598 50828959 50829464 NC_060929.1 CM039038.1 98.22 True local misassembly 49899502 49900026 50835770 50836294 NC_060929.1 CM039038.1 97.9 True local misassembly 49902874 49903465 50838983 50839574 NC_060929.1 CM039038.1 97.97 True relocation, inconsistency = -23151 49892200 49894280 50851460 50853525 NC_060929.1 CM039038.1 95.35 True local misassembly 49899502 49900026 50858202 50858726 NC_060929.1 CM039038.1 98.1 True local misassembly 49902869 49903465 50861420 50862016 NC_060929.1 CM039038.1 97.82 True relocation, inconsistency = -29703 49882091 49883262 50870345 50871511 NC_060929.1 CM039038.1 97.11 True local misassembly 49882064 49882569 50871918 50872423 NC_060929.1 CM039038.1 99.01 True local misassembly 49893093 49893598 50880233 50880738 NC_060929.1 CM039038.1 98.02 True local misassembly 49893064 49893598 50883109 50883643 NC_060929.1 CM039038.1 98.5 True local misassembly 49899081 49900072 50885493 50886465 NC_060929.1 CM039038.1 95.69 True local misassembly 49899502 49900026 50888908 50889432 NC_060929.1 CM039038.1 98.1 True local misassembly 49902869 49903465 50892111 50892707 NC_060929.1 CM039038.1 97.49 True relocation, inconsistency = -31519 49882064 49882569 50902825 50903330 NC_060929.1 CM039038.1 98.22 True relocation, inconsistency = 10552 49899502 49900026 50909711 50910235 NC_060929.1 CM039038.1 98.67 True relocation, inconsistency = -20258 49881618 49883227 50912085 50913704 NC_060929.1 CM039038.1 95.14 True relocation, inconsistency = 8562 49902869 49903465 50924784 50925380 NC_060929.1 CM039038.1 97.99 True indel: indel (> 5bp) 49903504 49904023 50925409 50925928 NC_060929.1 CM039038.1 97.88 True relocation, inconsistency = -19223 49899502 49900026 50940630 50941154 NC_060929.1 CM039038.1 98.48 True relocation, inconsistency = -22208 49879584 49880218 50942920 50943554 NC_060929.1 CM039038.1 95.78 True local misassembly 49882064 49882569 50945214 50945719 NC_060929.1 CM039038.1 98.42 True fake: not a misassembly (possible transposable element) 49900086 49900727 50953940 50954576 NC_060929.1 CM039038.1 96.14 True fake: not a misassembly (possible transposable element) 49893093 49893598 50955660 50956165 NC_060929.1 CM039038.1 98.02 True local misassembly 49893069 49893693 50961186 50961810 NC_060929.1 CM039038.1 96.35 True relocation, inconsistency = -16513 49882091 49883262 50966721 50967892 NC_060929.1 CM039038.1 97.45 True local misassembly 49882064 49882569 50968309 50968814 NC_060929.1 CM039038.1 98.81 True local misassembly 49893013 49893598 50976785 50977370 NC_060929.1 CM039038.1 98.29 True local misassembly 49893064 49893598 50979171 50979705 NC_060929.1 CM039038.1 98.32 True fake: not a misassembly (possible transposable element) 49882045 49882562 50982771 50983288 NC_060929.1 CM039038.1 98.65 True fake: not a misassembly (possible transposable element) 49901032 49901728 50987390 50988103 NC_060929.1 CM039038.1 95.66 True local misassembly 49902880 49903399 50989280 50989799 NC_060929.1 CM039038.1 97.88 True indel: indel (> 5bp) 49903509 49904023 50989884 50990398 NC_060929.1 CM039038.1 98.06 True relocation, inconsistency = -13160 49893120 49894078 50992655 50993623 NC_060929.1 CM039038.1 96.72 True local misassembly 49899507 49900026 50999417 50999936 NC_060929.1 CM039038.1 98.46 True relocation, inconsistency = -8998 49899502 49900026 51008410 51008934 NC_060929.1 CM039038.1 98.86 True relocation, inconsistency = -8708 49893093 49893598 51010709 51011214 NC_060929.1 CM039038.1 98.62 True relocation, inconsistency = -22909 49893093 49893598 51033618 51034123 NC_060929.1 CM039038.1 98.62 True fake: not a misassembly (possible transposable element) 49879718 49880222 51036879 51037378 NC_060929.1 CM039038.1 96.44 True fake: not a misassembly (possible transposable element) 49899502 49900026 51040564 51041088 NC_060929.1 CM039038.1 98.86 True relocation, inconsistency = -8703 49893093 49893598 51042858 51043363 NC_060929.1 CM039038.1 98.62 True relocation, inconsistency = -20692 49902760 49903883 51073217 51074340 NC_060929.1 CM039038.1 98.22 True indel: stretch of mismatches 49904065 49904818 51074522 51075275 NC_060929.1 CM039038.1 98.94 True local misassembly 49905313 49905941 51075830 51076458 NC_060929.1 CM039038.1 98.89 True indel: indel (> 5bp) 49906054 49906707 51076520 51077173 NC_060929.1 CM039038.1 97.55 True relocation, inconsistency = 85124 49994387 50014094 51079729 51099351 NC_060929.1 CM039038.1 96.93 True local misassembly 50011502 50130773 51099352 51218002 NC_060929.1 CM039038.1 97.86 True indel: stretch of mismatches 50130999 50131571 51218228 51218800 NC_060929.1 CM039038.1 98.6 True indel: indel (<= 5bp) 50131575 50133389 51218801 51220615 NC_060929.1 CM039038.1 99.45 True relocation, inconsistency = 72146 50205536 50207965 51220616 51223045 NC_060929.1 CM039038.1 98.56 True local misassembly 50207966 50209969 51223388 51225391 NC_060929.1 CM039038.1 98.8 True local misassembly 50210140 50212527 51225392 51227779 NC_060929.1 CM039038.1 98.41 True local misassembly 50212698 50215085 51227780 51230167 NC_060929.1 CM039038.1 98.45 True local misassembly 50215256 50217643 51230168 51232555 NC_060929.1 CM039038.1 98.32 True relocation, inconsistency = 8869 50226513 50227131 51232556 51233174 NC_060929.1 CM039038.1 97.74 True indel: indel (> 5bp) 50227138 50227717 51233175 51233754 NC_060929.1 CM039038.1 98.1 True relocation, inconsistency = -8359 50220013 50222548 51234409 51236945 NC_060929.1 CM039038.1 98.07 True relocation, inconsistency = -54236 50168313 50178757 51236946 51247390 NC_060929.1 CM039038.1 98.45 True indel: indel (<= 5bp) 50178759 50183076 51247391 51251708 NC_060929.1 CM039038.1 98.63 True local misassembly 50183418 50185634 51251709 51253925 NC_060929.1 CM039038.1 98.11 True local misassembly 50186384 50187397 51254333 51255346 NC_060929.1 CM039038.1 98.22 True local misassembly 50189138 50208024 51256398 51275104 NC_060929.1 CM039038.1 96.3 True local misassembly 50209736 50212153 51276813 51279230 NC_060929.1 CM039038.1 96.96 True relocation, inconsistency = 235331 50447485 50451865 51279231 51283611 NC_060929.1 CM039038.1 99.34 True indel: indel (<= 5bp) 50451867 50453335 51283612 51285080 NC_060929.1 CM039038.1 99.73 True indel: indel (<= 5bp) 50453336 50457098 51285082 51288844 NC_060929.1 CM039038.1 99.5 True local misassembly 50457269 50466514 51288845 51298090 NC_060929.1 CM039038.1 99.63 True indel: indel (<= 5bp) 50466515 50477178 51298093 51308756 NC_060929.1 CM039038.1 99.63 True indel: indel (<= 5bp) 50477179 50489722 51308758 51321301 NC_060929.1 CM039038.1 99.68 True relocation, inconsistency = 7821 50497569 50498667 51321327 51322425 NC_060929.1 CM039038.1 99.64 True local misassembly 50499179 50503213 51322426 51326460 NC_060929.1 CM039038.1 99.48 True indel: indel (<= 5bp) 50503214 50510287 51326463 51333536 NC_060929.1 CM039038.1 99.59 True indel: indel (<= 5bp) 50510289 50512780 51333537 51336028 NC_060929.1 CM039038.1 99.56 True indel: stretch of mismatches 50512805 50518404 51336053 51341652 NC_060929.1 CM039038.1 99.57 True indel: indel (<= 5bp) 50518405 50520234 51341654 51343483 NC_060929.1 CM039038.1 99.34 True indel: indel (<= 5bp) 50520236 50532342 51343484 51355590 NC_060929.1 CM039038.1 99.69 True indel: indel (<= 5bp) 50532343 50537532 51355593 51360782 NC_060929.1 CM039038.1 98.71 True relocation, inconsistency = 8005 50545538 50596932 51360783 51412161 NC_060929.1 CM039038.1 98.44 True relocation, inconsistency = -20448 50576485 50587972 51412162 51423133 NC_060929.1 CM039038.1 97.34 True indel: stretch of mismatches 50588126 50591466 51423287 51426626 NC_060929.1 CM039038.1 99.4 True translocation 25533036 25533711 51428793 51428118 NC_060943.1 CM039038.1 97.34 True indel: indel (<= 5bp) 25532532 25533034 51429296 51428794 NC_060943.1 CM039038.1 96.02 True local misassembly 25531559 25532088 51430099 51429570 NC_060943.1 CM039038.1 95.66 True indel: indel (<= 5bp) 25530551 25531557 51431106 51430100 NC_060943.1 CM039038.1 96.52 True indel: indel (<= 5bp) 25527709 25530206 51433945 51431450 NC_060943.1 CM039038.1 98.08 True translocation 83958113 83960244 51436084 51433949 NC_060947.1 CM039038.1 95.84 True relocation, inconsistency = 47376417 131337061 131340234 51436484 51439658 NC_060947.1 CM039038.1 96.0 True translocation 50584685 50592956 51440045 51448315 NC_060929.1 CM039038.1 97.74 True translocation 25287507 25308466 51470888 51449762 NC_060943.1 CM039038.1 97.04 True translocation 50607849 50671361 51470889 51534052 NC_060929.1 CM039038.1 98.89 True relocation, inconsistency = 32190 50704443 50707762 51534944 51538262 NC_060929.1 CM039038.1 96.63 True relocation, inconsistency = 19744 50727507 50729754 51538263 51540509 NC_060929.1 CM039038.1 96.03 True local misassembly 50736764 50870394 51541220 51674866 NC_060929.1 CM039038.1 98.11 True relocation, inconsistency = -51758 50818638 50962117 51674868 51818859 NC_060929.1 CM039038.1 97.49 True relocation, inconsistency = -10135 50951983 50957267 51818860 51824055 NC_060929.1 CM039038.1 95.18 True relocation, inconsistency = -30315 50927647 50929772 51824750 51826875 NC_060929.1 CM039038.1 97.18 True local misassembly 50929773 50932057 51827216 51829500 NC_060929.1 CM039038.1 96.89 True local misassembly 50932058 50936553 51829841 51834336 NC_060929.1 CM039038.1 97.02 True local misassembly 50936554 50938186 51834677 51836309 NC_060929.1 CM039038.1 97.12 True local misassembly 50938629 50940930 51837093 51839394 NC_060929.1 CM039038.1 97.18 True local misassembly 50940931 50942620 51839735 51841424 NC_060929.1 CM039038.1 97.1 True local misassembly 50943056 50944827 51842202 51843973 NC_060929.1 CM039038.1 97.35 True local misassembly 50945270 50947041 51844757 51846528 NC_060929.1 CM039038.1 96.95 True local misassembly 50947484 50949255 51847312 51849083 NC_060929.1 CM039038.1 96.67 True local misassembly 50949698 50951469 51849867 51851638 NC_060929.1 CM039038.1 97.52 True indel: indel (<= 5bp) 50951470 50952277 51851640 51852447 NC_060929.1 CM039038.1 97.15 True local misassembly 50952934 52910991 51853107 53805841 NC_060929.1 CM039038.1 99.49 True indel: indel (<= 5bp) 52911319 59380940 53806170 60280295 NC_060929.1 CM039038.1 99.55 True local misassembly 59381170 59414524 60280296 60314076 NC_060929.1 CM039038.1 97.98 True indel: indel (> 5bp) 59414611 63098182 60314202 63997774 NC_060929.1 CM039038.1 99.82 True local misassembly 63099944 66052376 63997884 66949937 NC_060929.1 CM039038.1 99.83 True local misassembly 66052428 69085109 66950131 69983399 NC_060929.1 CM039038.1 99.79 True indel: indel (> 5bp) 69085209 70560502 69983465 71458580 NC_060929.1 CM039038.1 99.91 True local misassembly 70560940 70944284 71458833 71842283 NC_060929.1 CM039038.1 99.96 True relocation, inconsistency = -343924 70683675 70747379 71906019 71842284 NC_060929.1 CM039038.1 99.57 True relocation, inconsistency = 259618 71006998 71234276 71906020 72133321 NC_060929.1 CM039038.1 99.94 True relocation, inconsistency = 36570846 34380633 34436151 72188847 72133322 NC_060929.1 CM039038.1 97.37 True relocation, inconsistency = 12753999 21604510 21626633 72188848 72211058 NC_060929.1 CM039038.1 97.76 True relocation, scaffold gap is present, inconsistency = 50079130 71705777 71715351 72211072 72220640 NC_060929.1 CM039038.1 99.59 True relocation, inconsistency = -18030 71697322 71715351 72220641 72238665 NC_060929.1 CM039038.1 99.66 True relocation, inconsistency = -18030 71697322 71729906 72238666 72271260 NC_060929.1 CM039038.1 99.44 True local misassembly 71731194 75798954 72271263 76338782 NC_060929.1 CM039038.1 99.79 True indel: indel (> 5bp) 75799069 76653565 76338889 77192395 NC_060929.1 CM039038.1 99.64 True indel: indel (> 5bp) 76653912 81085024 77192721 81624875 NC_060929.1 CM039038.1 99.76 True local misassembly 81085135 81176937 81624876 81716652 NC_060929.1 CM039038.1 99.28 True indel: indel (> 5bp) 81177476 81178033 81717146 81717703 NC_060929.1 CM039038.1 100.0 True indel: indel (> 5bp) 81178136 82951955 81717852 83491531 NC_060929.1 CM039038.1 99.77 True indel: indel (> 5bp) 82952243 87499753 83491853 88038302 NC_060929.1 CM039038.1 99.63 True indel: indel (> 5bp) 87499866 92827365 88038423 93365180 NC_060929.1 CM039038.1 99.89 True indel: indel (> 5bp) 92827401 98733634 93365238 99272551 NC_060929.1 CM039038.1 99.85 True indel: indel (> 5bp) 98733852 102558786 99272853 103097866 NC_060929.1 CM039038.1 99.86 True local misassembly 102558839 105371793 103098040 105916428 NC_060929.1 CM039038.1 99.54 True indel: indel (> 5bp) 105371886 107068661 105916469 107613148 NC_060929.1 CM039038.1 99.86 True local misassembly 107069148 107405714 107613531 107950433 NC_060929.1 CM039038.1 99.65 True local misassembly 107408703 108329767 107950641 108871928 NC_060929.1 CM039038.1 99.83 True local misassembly 108329859 115131234 108872201 115671699 NC_060929.1 CM039038.1 99.8 True indel: indel (> 5bp) 115131493 115457299 115672019 115997801 NC_060929.1 CM039038.1 99.83 True local misassembly 115457558 127259524 115997923 127810059 NC_060929.1 CM039038.1 99.67 True local misassembly 127259735 127767078 127810436 128318146 NC_060929.1 CM039038.1 99.7 True indel: indel (> 5bp) 127767240 132695713 128318279 133246622 NC_060929.1 CM039038.1 99.79 True indel: indel (> 5bp) 132695725 139266976 133246625 139813945 NC_060929.1 CM039038.1 99.62 True indel: indel (> 5bp) 139267087 141704702 139814078 142235318 NC_060929.1 CM039038.1 99.17 True local misassembly 141699501 145212188 142235319 145740305 NC_060929.1 CM039038.1 99.6 True local misassembly 145212216 145474202 145740484 146002487 NC_060929.1 CM039038.1 99.81 True local misassembly 145474655 149904833 146002727 150430074 NC_060929.1 CM039038.1 99.77 True indel: indel (> 5bp) 149904931 150185791 150430139 150710602 NC_060929.1 CM039038.1 99.6 True local misassembly 150186783 155565960 150711260 156090341 NC_060929.1 CM039038.1 99.66 True local misassembly 155566813 158529301 156091300 159067993 NC_060929.1 CM039038.1 99.33 True local misassembly 158531321 163440696 159067994 163973998 NC_060929.1 CM039038.1 99.69 True local misassembly 163441633 164915060 163975117 165449928 NC_060929.1 CM039038.1 99.68 True local misassembly 164915258 165475155 165450024 166010089 NC_060929.1 CM039038.1 99.76 True local misassembly 165475363 166006314 166010116 166540957 NC_060929.1 CM039038.1 99.7 True indel: indel (> 5bp) 166006336 171241786 166540985 171773548 NC_060929.1 CM039038.1 99.76 True local misassembly 171243258 173047868 171773549 173577181 NC_060929.1 CM039038.1 99.71 True indel: indel (<= 5bp) 173047937 174654718 173577252 175183252 NC_060929.1 CM039038.1 99.73 True local misassembly 174655039 174910868 175183435 175438896 NC_060929.1 CM039038.1 99.59 True indel: indel (> 5bp) 174910916 177138187 175438918 177665747 NC_060929.1 CM039038.1 99.47 True indel: indel (> 5bp) 177138236 178315725 177665773 178843523 NC_060929.1 CM039038.1 99.88 True relocation, inconsistency = 528657 176574681 176609578 178878643 178843524 NC_060929.1 CM039038.1 96.81 True relocation, inconsistency = 1747554 178357356 178851965 178878867 179375253 NC_060929.1 CM039038.1 99.16 True local misassembly 178851936 179308266 179375326 179832428 NC_060929.1 CM039038.1 98.65 True local misassembly 179308769 179965257 179832630 180489571 NC_060929.1 CM039038.1 99.7 True indel: indel (> 5bp) 179965343 180103177 180489632 180627184 NC_060929.1 CM039038.1 99.57 True indel: indel (<= 5bp) 180103182 180183587 180627185 180707573 NC_060929.1 CM039038.1 99.62 True local misassembly 180184316 180384889 180707574 180907963 NC_060929.1 CM039038.1 99.58 True indel: stretch of mismatches 180384912 180689759 180907986 181212980 NC_060929.1 CM039038.1 99.71 True local misassembly 180689936 181214999 181212981 181739505 NC_060929.1 CM039038.1 99.11 True local misassembly 181215167 181658048 181741425 182184723 NC_060929.1 CM039038.1 98.87 True local misassembly 181658399 181660431 182184908 182186939 NC_060929.1 CM039038.1 99.51 True local misassembly 181661049 181884327 182187402 182411285 NC_060929.1 CM039038.1 99.23 True local misassembly 181887745 182043960 182411286 182569173 NC_060929.1 CM039038.1 98.9 True translocation 160566253 160567349 182572809 182573911 NC_060931.1 CM039038.1 98.55 True CONTIG CM039038.1 182574178 misassembled 47147788 47148435 648 1 NC_060929.1 JAKCWS010000040.1 98.61 True relocation, inconsistency = -2221641 49366362 49368021 3715 2056 NC_060929.1 JAKCWS010000040.1 98.01 True fake: not a misassembly (possible transposable element) 49511899 49515172 7311 4039 NC_060929.1 JAKCWS010000040.1 97.71 True fake: not a misassembly (possible transposable element) 49353296 49354610 11682 10368 NC_060929.1 JAKCWS010000040.1 97.49 True relocation, inconsistency = 60815 49290916 49291529 13248 12634 NC_060929.1 JAKCWS010000040.1 97.24 True relocation, inconsistency = -76440 49360566 49361940 20038 18664 NC_060929.1 JAKCWS010000040.1 98.84 True relocation, inconsistency = 19702 49336994 49340303 23901 20599 NC_060929.1 JAKCWS010000040.1 97.95 True relocation, inconsistency = -218456 49551019 49553277 28332 26074 NC_060929.1 JAKCWS010000040.1 98.76 True relocation, inconsistency = 616281 48930461 48933192 32610 29878 NC_060929.1 JAKCWS010000040.1 97.44 True relocation, inconsistency = -504153 49433069 49434339 34154 32885 NC_060929.1 JAKCWS010000040.1 98.03 True relocation, inconsistency = 15965 49415030 49415970 36229 35288 NC_060929.1 JAKCWS010000040.1 97.56 True local misassembly 49413038 49415376 38903 36563 NC_060929.1 JAKCWS010000040.1 97.74 True relocation, inconsistency = -48231 49458214 49460860 41960 39312 NC_060929.1 JAKCWS010000040.1 98.0 True relocation, inconsistency = 60125 49397286 49398088 42763 41961 NC_060929.1 JAKCWS010000040.1 97.9 True local misassembly 49396527 49397229 44200 43498 NC_060929.1 JAKCWS010000040.1 97.58 True relocation, inconsistency = 101572 49289557 49292881 49595 46274 NC_060929.1 JAKCWS010000040.1 97.53 True relocation, inconsistency = -126374 49415226 49415930 50301 49596 NC_060929.1 JAKCWS010000040.1 97.63 True relocation, inconsistency = 2316411 47097862 47098448 51253 50668 NC_060929.1 JAKCWS010000040.1 97.13 True relocation, inconsistency = -2303500 49396934 49401361 55677 51254 NC_060929.1 JAKCWS010000040.1 97.88 True relocation, inconsistency = 29548 49366663 49367385 56400 55678 NC_060929.1 JAKCWS010000040.1 97.71 True fake: not a misassembly (possible transposable element) 49346998 49353751 63149 56401 NC_060929.1 JAKCWS010000040.1 97.82 True fake: not a misassembly (possible transposable element) 49356798 49357981 64559 63376 NC_060929.1 JAKCWS010000040.1 98.56 True indel: indel (<= 5bp) 49356287 49356796 65069 64560 NC_060929.1 JAKCWS010000040.1 98.04 True indel: indel (<= 5bp) 49354446 49355789 66905 65566 NC_060929.1 JAKCWS010000040.1 97.54 True relocation, inconsistency = -14607 49364734 49365246 71224 70712 NC_060929.1 JAKCWS010000040.1 97.66 True relocation, inconsistency = -34982 49396029 49396660 74911 74280 NC_060929.1 JAKCWS010000040.1 98.89 True indel: indel (<= 5bp) 49394935 49396028 76006 74913 NC_060929.1 JAKCWS010000040.1 96.25 True relocation, inconsistency = 26491 49365831 49367870 78619 76580 NC_060929.1 JAKCWS010000040.1 98.33 True fake: not a misassembly (possible transposable element) 49342588 49344720 81480 79348 NC_060929.1 JAKCWS010000040.1 97.05 True fake: not a misassembly (possible transposable element) 49362434 49362969 82016 81481 NC_060929.1 JAKCWS010000040.1 97.7 True local misassembly 49365831 49367870 84056 82017 NC_060929.1 JAKCWS010000040.1 98.33 True relocation, inconsistency = 37710 49325090 49327392 87088 84785 NC_060929.1 JAKCWS010000040.1 98.31 True relocation, inconsistency = 537788 48784298 48786886 90092 87504 NC_060929.1 JAKCWS010000040.1 98.42 True relocation, inconsistency = 1500397 47281415 47282455 92579 91538 NC_060929.1 JAKCWS010000040.1 98.18 True relocation, inconsistency = -2109860 49389191 49391092 94663 92762 NC_060929.1 JAKCWS010000040.1 98.11 True relocation, inconsistency = -13227 49389508 49391098 107573 105983 NC_060929.1 JAKCWS010000040.1 99.12 True translocation 122191889 122193064 110057 108883 NC_060925.1 JAKCWS010000040.1 95.49 True translocation 49363955 49365535 113083 111503 NC_060929.1 JAKCWS010000040.1 97.28 True relocation, inconsistency = -54010 49415560 49417261 115489 113787 NC_060929.1 JAKCWS010000040.1 98.27 True relocation, inconsistency = -96143 49509854 49511702 117336 115490 NC_060929.1 JAKCWS010000040.1 98.43 True relocation, inconsistency = 119242 49388779 49390493 119170 117455 NC_060929.1 JAKCWS010000040.1 97.9 True relocation, inconsistency = 44837 49339510 49340491 123602 122621 NC_060929.1 JAKCWS010000040.1 97.25 True indel: indel (<= 5bp) 49338623 49339506 124486 123603 NC_060929.1 JAKCWS010000040.1 98.19 True indel: indel (<= 5bp) 49337825 49338622 125285 124488 NC_060929.1 JAKCWS010000040.1 97.99 True local misassembly 49335650 49337485 127121 125286 NC_060929.1 JAKCWS010000040.1 97.11 True relocation, inconsistency = -99192 49434042 49434841 127921 127122 NC_060929.1 JAKCWS010000040.1 96.88 True indel: indel (<= 5bp) 49432939 49433579 129020 128380 NC_060929.1 JAKCWS010000040.1 96.88 True local misassembly 49431257 49432275 130362 129344 NC_060929.1 JAKCWS010000040.1 97.64 True relocation, inconsistency = 64879 49364791 49365982 131949 130758 NC_060929.1 JAKCWS010000040.1 97.99 True relocation, inconsistency = 97510 49263437 49265092 135793 134138 NC_060929.1 JAKCWS010000040.1 98.07 True relocation, inconsistency = -154911 49413540 49418007 140603 136134 NC_060929.1 JAKCWS010000040.1 97.74 True local misassembly 49413430 49418007 145467 140890 NC_060929.1 JAKCWS010000040.1 97.93 True relocation, inconsistency = 12573 49396934 49400856 149387 145468 NC_060929.1 JAKCWS010000040.1 97.77 True relocation, inconsistency = 29548 49366362 49367385 150411 149388 NC_060929.1 JAKCWS010000040.1 97.63 True relocation, inconsistency = -212686 49576007 49577989 153449 151470 NC_060929.1 JAKCWS010000040.1 98.55 True relocation, inconsistency = 174645 49396934 49401361 157873 153450 NC_060929.1 JAKCWS010000040.1 97.81 True relocation, inconsistency = 29548 49366663 49367385 158596 157874 NC_060929.1 JAKCWS010000040.1 97.59 True relocation, inconsistency = 12911 49346855 49353751 165488 158597 NC_060929.1 JAKCWS010000040.1 97.71 True local misassembly 49348658 49350495 168442 166604 NC_060929.1 JAKCWS010000040.1 98.3 True relocation, inconsistency = 2101039 47245424 47247618 170638 168443 NC_060929.1 JAKCWS010000040.1 98.13 True relocation, inconsistency = -2213134 49456304 49458129 172891 171067 NC_060929.1 JAKCWS010000040.1 97.81 True relocation, inconsistency = 40761 49414597 49415224 173836 173210 NC_060929.1 JAKCWS010000040.1 98.73 True relocation, inconsistency = -173965 49587186 49588238 175214 174160 NC_060929.1 JAKCWS010000040.1 98.2 True relocation, inconsistency = 68654 49513255 49514784 180489 178962 NC_060929.1 JAKCWS010000040.1 97.19 True relocation, inconsistency = 54378 49450236 49451243 189130 188123 NC_060929.1 JAKCWS010000040.1 98.21 True relocation, inconsistency = 32271 49415560 49417261 191536 189834 NC_060929.1 JAKCWS010000040.1 98.16 True relocation, inconsistency = -96143 49509854 49511702 193383 191537 NC_060929.1 JAKCWS010000040.1 98.38 True relocation, inconsistency = 250037 49255101 49256641 198100 196559 NC_060929.1 JAKCWS010000040.1 97.54 True relocation, inconsistency = -111774 49364836 49365970 200139 199005 NC_060929.1 JAKCWS010000040.1 98.15 True relocation, inconsistency = 38729 49325409 49326106 200838 200140 NC_060929.1 JAKCWS010000040.1 97.46 True relocation, inconsistency = 2158109 47166306 47167293 201832 200845 NC_060929.1 JAKCWS010000040.1 97.77 True relocation, inconsistency = -2234202 49398615 49399285 203725 203055 NC_060929.1 JAKCWS010000040.1 97.76 True indel: indel (<= 5bp) 49397276 49398611 205061 203726 NC_060929.1 JAKCWS010000040.1 97.98 True relocation, inconsistency = -174983 49569194 49570985 208126 206335 NC_060929.1 JAKCWS010000040.1 97.55 True relocation, inconsistency = 2398316 47167944 47168992 211060 210012 NC_060929.1 JAKCWS010000040.1 97.71 True relocation, inconsistency = -2183590 49348024 49350293 214571 212301 NC_060929.1 JAKCWS010000040.1 97.67 True relocation, inconsistency = -43479 49388636 49391055 217441 215019 NC_060929.1 JAKCWS010000040.1 98.18 True relocation, inconsistency = -41439 49428641 49430074 218877 217442 NC_060929.1 JAKCWS010000040.1 97.97 True local misassembly 49422747 49427451 224772 220066 NC_060929.1 JAKCWS010000040.1 97.81 True relocation, inconsistency = 95795 49322601 49326951 229126 224773 NC_060929.1 JAKCWS010000040.1 97.49 True relocation, inconsistency = 2082689 47238941 47239911 230094 229127 NC_060929.1 JAKCWS010000040.1 98.52 True relocation, inconsistency = -2224000 49456085 49460900 236946 232135 NC_060929.1 JAKCWS010000040.1 97.1 True relocation, inconsistency = 901282 48553005 48554023 238742 237726 NC_060929.1 JAKCWS010000040.1 97.84 True relocation, inconsistency = -776954 49325884 49329579 242818 239122 NC_060929.1 JAKCWS010000040.1 97.51 True relocation, inconsistency = -16988 49340916 49342802 244773 242888 NC_060929.1 JAKCWS010000040.1 98.3 True relocation, inconsistency = -17664 49357906 49358474 245448 244879 NC_060929.1 JAKCWS010000040.1 96.71 True relocation, inconsistency = -138943 49494526 49496848 247771 245449 NC_060929.1 JAKCWS010000040.1 97.98 True relocation, inconsistency = 151851 49340863 49342341 249582 248105 NC_060929.1 JAKCWS010000040.1 98.58 True relocation, inconsistency = 239836 49099832 49100466 250777 250143 NC_060929.1 JAKCWS010000040.1 97.8 True indel: indel (<= 5bp) 49099308 49099830 251300 250778 NC_060929.1 JAKCWS010000040.1 97.85 True relocation, inconsistency = 18005 49079347 49081302 253257 251301 NC_060929.1 JAKCWS010000040.1 97.8 True relocation, inconsistency = -330537 49406895 49409261 256246 253880 NC_060929.1 JAKCWS010000040.1 97.89 True relocation, inconsistency = 1042275 48363208 48364267 257658 256599 NC_060929.1 JAKCWS010000040.1 98.68 True relocation, inconsistency = -979434 49337941 49340303 262360 259997 NC_060929.1 JAKCWS010000040.1 97.59 True relocation, inconsistency = -230689 49563059 49564396 267932 266594 NC_060929.1 JAKCWS010000040.1 97.98 True relocation, inconsistency = 169545 49391162 49393153 270286 268293 NC_060929.1 JAKCWS010000040.1 97.64 True relocation, inconsistency = 28194 49362227 49362967 271027 270287 NC_060929.1 JAKCWS010000040.1 97.6 True local misassembly 49361005 49363245 273267 271028 NC_060929.1 JAKCWS010000040.1 97.41 True relocation, inconsistency = -78468 49437694 49439463 275044 273277 NC_060929.1 JAKCWS010000040.1 97.46 True relocation, inconsistency = 7134 49425266 49429615 280337 275989 NC_060929.1 JAKCWS010000040.1 97.84 True local misassembly 49425217 49429615 284803 280406 NC_060929.1 JAKCWS010000040.1 97.73 True relocation, inconsistency = 69293 49352708 49353829 288019 286898 NC_060929.1 JAKCWS010000040.1 97.86 True local misassembly 49349312 49350465 291415 290262 NC_060929.1 JAKCWS010000040.1 97.92 True relocation, inconsistency = -167819 49511479 49512351 297067 296195 NC_060929.1 JAKCWS010000040.1 97.94 True relocation, inconsistency = -47921 49554558 49556034 301908 300433 NC_060929.1 JAKCWS010000040.1 98.04 True relocation, inconsistency = 64908 49486028 49487554 305528 304004 NC_060929.1 JAKCWS010000040.1 97.64 True relocation, inconsistency = 141990 49335880 49340206 313684 309360 NC_060929.1 JAKCWS010000040.1 98.1 True fake: not a misassembly (possible transposable element) 49415030 49417413 316402 314018 NC_060929.1 JAKCWS010000040.1 97.95 True fake: not a misassembly (possible transposable element) 49325090 49327392 319039 316736 NC_060929.1 JAKCWS010000040.1 98.22 True relocation, inconsistency = -121613 49444968 49446225 320774 319517 NC_060929.1 JAKCWS010000040.1 98.65 True fake: not a misassembly (possible transposable element) 49413075 49415094 323116 321096 NC_060929.1 JAKCWS010000040.1 97.87 True fake: not a misassembly (possible transposable element) 49438902 49439463 326840 326279 NC_060929.1 JAKCWS010000040.1 98.75 True relocation, inconsistency = 23438 49413038 49415094 329268 327210 NC_060929.1 JAKCWS010000040.1 98.01 True relocation, inconsistency = 249673 49161247 49162516 331386 330117 NC_060929.1 JAKCWS010000040.1 98.19 True relocation, inconsistency = -416163 49576391 49577409 332405 331387 NC_060929.1 JAKCWS010000040.1 98.11 True relocation, inconsistency = 169209 49406163 49407177 333424 332410 NC_060929.1 JAKCWS010000040.1 99.11 True relocation, inconsistency = 96137 49307245 49309086 336205 334364 NC_060929.1 JAKCWS010000040.1 97.61 True relocation, inconsistency = 143682 49161247 49162516 338521 337252 NC_060929.1 JAKCWS010000040.1 98.27 True relocation, inconsistency = -123637 49283778 49284883 339627 338522 NC_060929.1 JAKCWS010000040.1 97.21 True relocation, inconsistency = -216738 49498603 49500134 341541 340009 NC_060929.1 JAKCWS010000040.1 98.24 True relocation, inconsistency = -61171 49550977 49553277 350334 348038 NC_060929.1 JAKCWS010000040.1 98.74 True local misassembly 49550819 49553218 355932 353531 NC_060929.1 JAKCWS010000040.1 98.58 True relocation, inconsistency = 125377 49419782 49424206 361592 357168 NC_060929.1 JAKCWS010000040.1 97.58 True relocation, inconsistency = -133874 49550977 49553277 364269 361971 NC_060929.1 JAKCWS010000040.1 98.35 True relocation, inconsistency = 1231182 48316918 48319081 367146 364983 NC_060929.1 JAKCWS010000040.1 98.43 True local misassembly 48316408 48316917 367996 367487 NC_060929.1 JAKCWS010000040.1 98.43 True relocation, inconsistency = -1091540 49404211 49407177 371733 368767 NC_060929.1 JAKCWS010000040.1 98.55 True local misassembly 49403138 49407177 376543 372505 NC_060929.1 JAKCWS010000040.1 98.17 True relocation, inconsistency = -92068 49492487 49494872 379262 376877 NC_060929.1 JAKCWS010000040.1 98.24 True local misassembly 49492487 49494872 385379 382994 NC_060929.1 JAKCWS010000040.1 98.37 True translocation 125892748 125893790 391179 390136 NC_060925.1 JAKCWS010000040.1 96.65 True translocation 49570647 49571321 394896 394222 NC_060929.1 JAKCWS010000040.1 97.33 True relocation, inconsistency = 2076149 47492018 47493824 397375 395570 NC_060929.1 JAKCWS010000040.1 98.62 True relocation, inconsistency = -2083627 49574385 49575071 398635 397949 NC_060929.1 JAKCWS010000040.1 98.11 True relocation, inconsistency = 2052696 47520807 47521679 399516 398645 NC_060929.1 JAKCWS010000040.1 98.28 True relocation, inconsistency = -1895717 49413572 49415376 402469 400664 NC_060929.1 JAKCWS010000040.1 98.28 True relocation, inconsistency = 712743 48698689 48699822 404609 403476 NC_060929.1 JAKCWS010000040.1 96.47 True local misassembly 48697727 48698348 405231 404610 NC_060929.1 JAKCWS010000040.1 98.55 True relocation, inconsistency = -665523 49361157 49362007 407324 406474 NC_060929.1 JAKCWS010000040.1 98.71 True relocation, inconsistency = -33287 49388895 49391222 412874 410546 NC_060929.1 JAKCWS010000040.1 98.15 True relocation, inconsistency = -102246 49484011 49486374 420004 417641 NC_060929.1 JAKCWS010000040.1 98.1 True relocation, inconsistency = -74426 49555409 49556676 423032 421765 NC_060929.1 JAKCWS010000040.1 98.82 True local misassembly 49550006 49551147 425031 423895 NC_060929.1 JAKCWS010000040.1 97.37 True relocation, inconsistency = 92092 49456126 49456770 426819 426175 NC_060929.1 JAKCWS010000040.1 98.45 True relocation, inconsistency = 89001 49359999 49361985 433944 431959 NC_060929.1 JAKCWS010000040.1 98.74 True local misassembly 49362746 49363403 434935 434278 NC_060929.1 JAKCWS010000040.1 97.42 True local misassembly 49359999 49361977 437676 435699 NC_060929.1 JAKCWS010000040.1 98.79 True local misassembly 49362746 49363403 438667 438010 NC_060929.1 JAKCWS010000040.1 97.42 True local misassembly 49359999 49362007 441408 439401 NC_060929.1 JAKCWS010000040.1 98.61 True indel: stretch of mismatches 49358995 49359594 442412 441813 NC_060929.1 JAKCWS010000040.1 98.33 True relocation, inconsistency = 11889 49342675 49344720 446842 444798 NC_060929.1 JAKCWS010000040.1 98.44 True indel: stretch of mismatches 49341611 49342341 447905 447176 NC_060929.1 JAKCWS010000040.1 98.36 True fake: not a misassembly (possible transposable element) 49359999 49362007 450577 448570 NC_060929.1 JAKCWS010000040.1 98.71 True fake: not a misassembly (possible transposable element) 49342675 49344720 452955 450911 NC_060929.1 JAKCWS010000040.1 98.39 True indel: stretch of mismatches 49341671 49342341 453959 453289 NC_060929.1 JAKCWS010000040.1 98.66 True relocation, inconsistency = -25813 49362118 49363403 459325 458040 NC_060929.1 JAKCWS010000040.1 97.74 True relocation, inconsistency = -46191 49403702 49405674 463932 461960 NC_060929.1 JAKCWS010000040.1 97.82 True relocation, inconsistency = -133184 49534845 49536328 465973 464490 NC_060929.1 JAKCWS010000040.1 98.65 True relocation, inconsistency = 277903 49255077 49256718 467839 466197 NC_060929.1 JAKCWS010000040.1 97.87 True relocation, inconsistency = 866977 48386353 48387918 469583 468021 NC_060929.1 JAKCWS010000040.1 98.02 True relocation, inconsistency = 1127048 47257657 47258519 471227 470369 NC_060929.1 JAKCWS010000040.1 97.57 True relocation, inconsistency = -2083036 49338962 49340303 472958 471617 NC_060929.1 JAKCWS010000040.1 98.58 True local misassembly 49336787 49338265 475134 473656 NC_060929.1 JAKCWS010000040.1 98.24 True relocation, inconsistency = 946816 48386353 48387918 478749 477187 NC_060929.1 JAKCWS010000040.1 98.09 True relocation, inconsistency = 1127048 47257657 47258519 480393 479535 NC_060929.1 JAKCWS010000040.1 97.68 True relocation, inconsistency = -2083036 49338962 49340303 482124 480783 NC_060929.1 JAKCWS010000040.1 98.66 True relocation, inconsistency = 2075907 47257657 47258519 487518 486660 NC_060929.1 JAKCWS010000040.1 97.57 True relocation, inconsistency = -2083036 49337941 49340303 490267 487908 NC_060929.1 JAKCWS010000040.1 98.39 True relocation, inconsistency = -148789 49484011 49486374 492986 490623 NC_060929.1 JAKCWS010000040.1 98.48 True relocation, inconsistency = 110054 49363114 49364693 503829 502250 NC_060929.1 JAKCWS010000040.1 97.53 True relocation, inconsistency = -182782 49544228 49545369 505493 504356 NC_060929.1 JAKCWS010000040.1 97.9 True relocation, inconsistency = 2284838 47257657 47258519 507222 506364 NC_060929.1 JAKCWS010000040.1 97.22 True relocation, inconsistency = -2180523 49433055 49434649 512347 510753 NC_060929.1 JAKCWS010000040.1 97.93 True relocation, inconsistency = 119914 49311420 49313117 514065 512371 NC_060929.1 JAKCWS010000040.1 98.18 True fake: not a misassembly (possible transposable element) 49570214 49570986 514839 514066 NC_060929.1 JAKCWS010000040.1 97.15 True fake: not a misassembly (possible transposable element) 49307025 49309387 521510 519148 NC_060929.1 JAKCWS010000040.1 98.22 True relocation, inconsistency = -270782 49575645 49577420 523671 521897 NC_060929.1 JAKCWS010000040.1 98.7 True relocation, inconsistency = 245308 49325090 49327392 528919 526616 NC_060929.1 JAKCWS010000040.1 98.31 True relocation, inconsistency = -252776 49575645 49577420 531139 529365 NC_060929.1 JAKCWS010000040.1 98.82 True relocation, inconsistency = 718200 48855139 48856450 533444 532134 NC_060929.1 JAKCWS010000040.1 98.55 True relocation, inconsistency = -597565 49445566 49446257 540582 539891 NC_060929.1 JAKCWS010000040.1 97.98 True local misassembly 49442566 49444928 543582 541220 NC_060929.1 JAKCWS010000040.1 98.43 True relocation, inconsistency = 38728 49398469 49399249 548951 548171 NC_060929.1 JAKCWS010000040.1 98.72 True relocation, inconsistency = 59104 49336198 49338265 552113 550051 NC_060929.1 JAKCWS010000040.1 97.1 True relocation, inconsistency = 9858 49321694 49323996 556756 554457 NC_060929.1 JAKCWS010000040.1 98.13 True relocation, inconsistency = -23441 49342473 49343229 559418 558662 NC_060929.1 JAKCWS010000040.1 97.49 True relocation, inconsistency = -67251 49397080 49397709 572058 571433 NC_060929.1 JAKCWS010000040.1 97.3 True relocation, inconsistency = -30913 49426664 49427510 573387 572541 NC_060929.1 JAKCWS010000040.1 97.99 True relocation, inconsistency = 87299 49336198 49338265 576550 574487 NC_060929.1 JAKCWS010000040.1 97.3 True relocation, inconsistency = -61479 49395194 49395768 579033 578459 NC_060929.1 JAKCWS010000040.1 98.78 True relocation, inconsistency = 32606 49356142 49357628 585474 583993 NC_060929.1 JAKCWS010000040.1 98.52 True local misassembly 49351847 49353861 589762 587752 NC_060929.1 JAKCWS010000040.1 98.26 True relocation, inconsistency = 1172402 48176201 48177283 593006 591924 NC_060929.1 JAKCWS010000040.1 98.34 True relocation, inconsistency = -1378623 49551019 49553277 596807 594553 NC_060929.1 JAKCWS010000040.1 98.63 True local misassembly 49551019 49553277 600538 598284 NC_060929.1 JAKCWS010000040.1 98.58 True relocation, inconsistency = 221515 49325090 49327392 604949 602650 NC_060929.1 JAKCWS010000040.1 98.0 True relocation, inconsistency = -144029 49466554 49467156 607514 606912 NC_060929.1 JAKCWS010000040.1 97.01 True relocation, inconsistency = 92392 49366480 49367134 615196 614542 NC_060929.1 JAKCWS010000040.1 98.32 True local misassembly 49363308 49364693 618368 616983 NC_060929.1 JAKCWS010000040.1 97.98 True relocation, inconsistency = 2228766 47127955 47129044 624955 623866 NC_060929.1 JAKCWS010000040.1 98.72 True indel: indel (<= 5bp) 47127215 47127953 625694 624956 NC_060929.1 JAKCWS010000040.1 97.97 True relocation, inconsistency = 23443 47099416 47100505 630050 628961 NC_060929.1 JAKCWS010000040.1 98.62 True indel: indel (<= 5bp) 47098676 47099414 630789 630051 NC_060929.1 JAKCWS010000040.1 98.11 True local misassembly 47099416 47100505 635145 634056 NC_060929.1 JAKCWS010000040.1 98.53 True indel: indel (<= 5bp) 47098676 47099414 635884 635146 NC_060929.1 JAKCWS010000040.1 97.97 True relocation, inconsistency = -2248812 49342981 49344720 640390 638652 NC_060929.1 JAKCWS010000040.1 98.45 True relocation, inconsistency = -236807 49576720 49577450 643458 642728 NC_060929.1 JAKCWS010000040.1 98.22 True relocation, inconsistency = 123689 49447322 49449684 649163 646805 NC_060929.1 JAKCWS010000040.1 98.01 True local misassembly 49445269 49446257 651217 650229 NC_060929.1 JAKCWS010000040.1 98.37 True relocation, inconsistency = 109382 49333524 49335886 653572 651218 NC_060929.1 JAKCWS010000040.1 97.93 True fake: not a misassembly (possible transposable element) 49361374 49361981 654599 653992 NC_060929.1 JAKCWS010000040.1 98.68 True fake: not a misassembly (possible transposable element) 49325090 49327360 657586 655320 NC_060929.1 JAKCWS010000040.1 98.06 True local misassembly 49322001 49323966 660678 658712 NC_060929.1 JAKCWS010000040.1 98.42 True relocation, inconsistency = -85263 49399962 49402673 667964 665269 NC_060929.1 JAKCWS010000040.1 96.79 True relocation, inconsistency = 1738745 47657960 47659509 671221 669672 NC_060929.1 JAKCWS010000040.1 97.29 True relocation, inconsistency = -1861054 49517172 49518648 673059 671587 NC_060929.1 JAKCWS010000040.1 98.1 True relocation, inconsistency = 236109 49279207 49279743 674916 674379 NC_060929.1 JAKCWS010000040.1 97.21 True relocation, inconsistency = -296937 49573928 49575071 677132 675989 NC_060929.1 JAKCWS010000040.1 97.21 True relocation, inconsistency = 12916 49559724 49560601 678420 677543 NC_060929.1 JAKCWS010000040.1 96.36 True local misassembly 49558304 49559383 679500 678421 NC_060929.1 JAKCWS010000040.1 97.78 True relocation, inconsistency = 194338 49361753 49363403 681713 680063 NC_060929.1 JAKCWS010000040.1 97.4 True relocation, inconsistency = 1200931 48159093 48159612 683442 682923 NC_060929.1 JAKCWS010000040.1 97.88 True relocation, inconsistency = -1277700 49432701 49435906 687536 684329 NC_060929.1 JAKCWS010000040.1 97.82 True CONTIG JAKCWS010000040.1 687536 misassembled 49456537 49460161 1 3625 NC_060929.1 JAKCWS010000049.1 97.74 True local misassembly 49456085 49462738 3626 10283 NC_060929.1 JAKCWS010000049.1 97.88 True local misassembly 49457307 49460161 10284 13138 NC_060929.1 JAKCWS010000049.1 97.87 True local misassembly 49456085 49462738 13139 19796 NC_060929.1 JAKCWS010000049.1 97.88 True local misassembly 49457307 49461518 19797 24010 NC_060929.1 JAKCWS010000049.1 97.74 True local misassembly 49456085 49462447 24011 30375 NC_060929.1 JAKCWS010000049.1 97.88 True local misassembly 49456676 49460161 30376 33861 NC_060929.1 JAKCWS010000049.1 97.72 True local misassembly 49456085 49461518 33862 39297 NC_060929.1 JAKCWS010000049.1 97.76 True local misassembly 49456085 49463425 39298 46636 NC_060929.1 JAKCWS010000049.1 97.78 True relocation, inconsistency = -21057 49442535 49443090 46803 47358 NC_060929.1 JAKCWS010000049.1 95.5 True indel: indel (<= 5bp) 49443091 49445128 47360 49397 NC_060929.1 JAKCWS010000049.1 98.09 True indel: stretch of mismatches 49445185 49446776 49454 51045 NC_060929.1 JAKCWS010000049.1 97.99 True relocation, inconsistency = 8832 49456498 49457443 51935 52880 NC_060929.1 JAKCWS010000049.1 97.81 True local misassembly 49456085 49462738 52881 59538 NC_060929.1 JAKCWS010000049.1 97.97 True local misassembly 49457307 49462738 59539 64974 NC_060929.1 JAKCWS010000049.1 98.11 True local misassembly 49463483 49466318 65718 68549 NC_060929.1 JAKCWS010000049.1 98.13 True relocation, inconsistency = -13926 49456085 49459408 72242 75565 NC_060929.1 JAKCWS010000049.1 97.93 True relocation, inconsistency = -11208 49448201 49459788 75566 86818 NC_060929.1 JAKCWS010000049.1 95.15 True local misassembly 49458770 49460183 86819 88232 NC_060929.1 JAKCWS010000049.1 98.49 True indel: indel (<= 5bp) 49460184 49461540 88235 89591 NC_060929.1 JAKCWS010000049.1 98.53 True indel: indel (<= 5bp) 49461541 49462456 89594 90509 NC_060929.1 JAKCWS010000049.1 98.03 True local misassembly 49458726 49460161 90512 91947 NC_060929.1 JAKCWS010000049.1 98.56 True local misassembly 49456085 49460186 91948 96049 NC_060929.1 JAKCWS010000049.1 98.08 True relocation, inconsistency = -12907 49447291 49447846 96061 96616 NC_060929.1 JAKCWS010000049.1 95.68 True indel: indel (<= 5bp) 49447847 49449884 96618 98655 NC_060929.1 JAKCWS010000049.1 97.84 True indel: stretch of mismatches 49449941 49451696 98712 100467 NC_060929.1 JAKCWS010000049.1 98.46 True local misassembly 49447291 49447846 100479 101034 NC_060929.1 JAKCWS010000049.1 95.68 True local misassembly 49443091 49445128 101036 103073 NC_060929.1 JAKCWS010000049.1 97.79 True local misassembly 49438391 49440146 103130 104885 NC_060929.1 JAKCWS010000049.1 98.41 True local misassembly 49435729 49436975 104886 106132 NC_060929.1 JAKCWS010000049.1 96.03 True indel: stretch of mismatches 49437032 49438334 106189 107491 NC_060929.1 JAKCWS010000049.1 98.16 True indel: stretch of mismatches 49438391 49440143 107548 109300 NC_060929.1 JAKCWS010000049.1 98.17 True indel: indel (<= 5bp) 49440144 49440725 109303 109884 NC_060929.1 JAKCWS010000049.1 97.94 True local misassembly 49443445 49445128 109885 111568 NC_060929.1 JAKCWS010000049.1 98.52 True indel: stretch of mismatches 49445185 49446428 111625 112868 NC_060929.1 JAKCWS010000049.1 97.91 True indel: indel (<= 5bp) 49446433 49446951 112869 113387 NC_060929.1 JAKCWS010000049.1 98.84 True local misassembly 49447291 49447846 113388 113943 NC_060929.1 JAKCWS010000049.1 95.5 True indel: indel (<= 5bp) 49447847 49449886 113945 115984 NC_060929.1 JAKCWS010000049.1 98.33 True local misassembly 49456498 49460161 117161 120824 NC_060929.1 JAKCWS010000049.1 97.81 True local misassembly 49456085 49462738 120825 127482 NC_060929.1 JAKCWS010000049.1 97.81 True local misassembly 49457307 49460929 127483 131107 NC_060929.1 JAKCWS010000049.1 97.93 True local misassembly 49456855 49461518 131108 135773 NC_060929.1 JAKCWS010000049.1 97.95 True local misassembly 49456085 49462724 135774 142417 NC_060929.1 JAKCWS010000049.1 97.79 True local misassembly 49457293 49461025 142418 146152 NC_060929.1 JAKCWS010000049.1 97.8 True CONTIG JAKCWS010000049.1 146152 misassembled 49456126 49461518 12 5406 NC_060929.1 JAKCWS010000050.1 98.0 True local misassembly 49456085 49461518 5407 10842 NC_060929.1 JAKCWS010000050.1 97.64 True local misassembly 49456085 49462738 10843 17498 NC_060929.1 JAKCWS010000050.1 97.67 True local misassembly 49457307 49462447 17499 22643 NC_060929.1 JAKCWS010000050.1 97.97 True relocation, inconsistency = -19018 49443445 49445128 22659 24342 NC_060929.1 JAKCWS010000050.1 98.4 True indel: stretch of mismatches 49445185 49447825 24399 27039 NC_060929.1 JAKCWS010000050.1 97.99 True local misassembly 49448165 49449884 27040 28759 NC_060929.1 JAKCWS010000050.1 98.08 True indel: stretch of mismatches 49449941 49451693 28816 30568 NC_060929.1 JAKCWS010000050.1 98.17 True indel: indel (<= 5bp) 49451694 49452514 30571 31391 NC_060929.1 JAKCWS010000050.1 97.93 True indel: indel (<= 5bp) 49452518 49453028 31392 31902 NC_060929.1 JAKCWS010000050.1 98.12 True local misassembly 49456085 49463425 31903 39241 NC_060929.1 JAKCWS010000050.1 97.81 True relocation, inconsistency = -21057 49442535 49443092 39408 39965 NC_060929.1 JAKCWS010000050.1 95.52 True indel: indel (<= 5bp) 49443093 49445128 39967 42002 NC_060929.1 JAKCWS010000050.1 97.94 True indel: indel (<= 5bp) 49445409 49447787 42281 44659 NC_060929.1 JAKCWS010000050.1 97.98 True local misassembly 49446433 49446951 44660 45178 NC_060929.1 JAKCWS010000050.1 98.84 True local misassembly 49447291 49447848 45179 45736 NC_060929.1 JAKCWS010000050.1 95.52 True indel: indel (<= 5bp) 49447849 49448953 45738 46842 NC_060929.1 JAKCWS010000050.1 97.99 True relocation, inconsistency = 7131 49456085 49463425 46843 54181 NC_060929.1 JAKCWS010000050.1 97.8 True relocation, inconsistency = -21057 49442535 49443092 54348 54905 NC_060929.1 JAKCWS010000050.1 95.52 True indel: indel (<= 5bp) 49443093 49445128 54907 56942 NC_060929.1 JAKCWS010000050.1 98.04 True indel: stretch of mismatches 49445185 49446776 56999 58590 NC_060929.1 JAKCWS010000050.1 97.99 True relocation, inconsistency = 8832 49456498 49461518 59480 64502 NC_060929.1 JAKCWS010000050.1 97.84 True local misassembly 49456085 49462738 64503 71160 NC_060929.1 JAKCWS010000050.1 97.97 True local misassembly 49457307 49461518 71161 75374 NC_060929.1 JAKCWS010000050.1 97.76 True local misassembly 49456085 49460161 75375 79451 NC_060929.1 JAKCWS010000050.1 97.8 True local misassembly 49456085 49461518 79452 84887 NC_060929.1 JAKCWS010000050.1 97.83 True local misassembly 49456085 49462738 84888 91543 NC_060929.1 JAKCWS010000050.1 97.81 True local misassembly 49457307 49461518 91544 95757 NC_060929.1 JAKCWS010000050.1 97.85 True local misassembly 49456085 49462447 95758 102122 NC_060929.1 JAKCWS010000050.1 97.91 True relocation, inconsistency = -14262 49448186 49449884 102123 103821 NC_060929.1 JAKCWS010000050.1 98.08 True indel: stretch of mismatches 49449941 49451693 103878 105630 NC_060929.1 JAKCWS010000050.1 98.0 True indel: indel (<= 5bp) 49451694 49452878 105633 106817 NC_060929.1 JAKCWS010000050.1 97.97 True relocation, inconsistency = -8829 49444050 49445128 106818 107896 NC_060929.1 JAKCWS010000050.1 98.05 True indel: stretch of mismatches 49445185 49447825 107953 110593 NC_060929.1 JAKCWS010000050.1 97.92 True local misassembly 49448165 49449884 110594 112313 NC_060929.1 JAKCWS010000050.1 98.08 True indel: stretch of mismatches 49449941 49451671 112370 114100 NC_060929.1 JAKCWS010000050.1 98.06 True local misassembly 49456085 49462727 114101 120747 NC_060929.1 JAKCWS010000050.1 97.79 True local misassembly 49458657 49462262 120748 124357 NC_060929.1 JAKCWS010000050.1 97.88 True local misassembly 49456491 49458802 124358 126669 NC_060929.1 JAKCWS010000050.1 97.62 True local misassembly 49456085 49462727 126670 133314 NC_060929.1 JAKCWS010000050.1 97.73 True CONTIG JAKCWS010000050.1 133453 misassembled 49437287 49440710 1 3426 NC_060929.1 JAKCWS010000051.1 97.99 True local misassembly 49447343 49453617 4624 10902 NC_060929.1 JAKCWS010000051.1 97.82 True fake: not a misassembly (possible transposable element) 49389235 49391801 12419 14987 NC_060929.1 JAKCWS010000051.1 98.09 True fake: not a misassembly (possible transposable element) 49456085 49462737 15070 21722 NC_060929.1 JAKCWS010000051.1 97.73 True relocation, inconsistency = -74048 49389235 49391801 22268 24836 NC_060929.1 JAKCWS010000051.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 24919 31629 NC_060929.1 JAKCWS010000051.1 97.84 True local misassembly 49456085 49462107 31710 37736 NC_060929.1 JAKCWS010000051.1 97.75 True relocation, inconsistency = -25132 49437032 49438334 37793 39095 NC_060929.1 JAKCWS010000051.1 98.39 True indel: stretch of mismatches 49438391 49439353 39152 40114 NC_060929.1 JAKCWS010000051.1 98.23 True relocation, inconsistency = 19021 49458431 49460161 40171 41901 NC_060929.1 JAKCWS010000051.1 98.35 True local misassembly 49456085 49461543 41902 47361 NC_060929.1 JAKCWS010000051.1 97.91 True local misassembly 49456469 49460750 49082 53365 NC_060929.1 JAKCWS010000051.1 97.71 True local misassembly 49458431 49460183 53422 55174 NC_060929.1 JAKCWS010000051.1 98.29 True indel: indel (<= 5bp) 49460184 49461540 55177 56533 NC_060929.1 JAKCWS010000051.1 98.01 True indel: indel (<= 5bp) 49461541 49462107 56536 57102 NC_060929.1 JAKCWS010000051.1 97.88 True local misassembly 49458431 49460183 57159 58911 NC_060929.1 JAKCWS010000051.1 98.29 True indel: indel (<= 5bp) 49460184 49461540 58914 60270 NC_060929.1 JAKCWS010000051.1 98.31 True indel: indel (<= 5bp) 49461541 49462107 60273 60839 NC_060929.1 JAKCWS010000051.1 98.77 True local misassembly 49456085 49462738 61268 67925 NC_060929.1 JAKCWS010000051.1 97.81 True local misassembly 49458666 49461912 67926 71176 NC_060929.1 JAKCWS010000051.1 97.96 True local misassembly 49456085 49462738 71800 78457 NC_060929.1 JAKCWS010000051.1 97.82 True local misassembly 49461382 49462107 78458 79185 NC_060929.1 JAKCWS010000051.1 97.84 True local misassembly 49456085 49462738 79614 86271 NC_060929.1 JAKCWS010000051.1 97.88 True local misassembly 49457307 49461518 86272 90485 NC_060929.1 JAKCWS010000051.1 97.87 True local misassembly 49456085 49462738 90486 97143 NC_060929.1 JAKCWS010000051.1 97.91 True local misassembly 49457307 49461518 97144 101357 NC_060929.1 JAKCWS010000051.1 97.9 True local misassembly 49456085 49462738 101358 108015 NC_060929.1 JAKCWS010000051.1 97.84 True local misassembly 49458666 49461518 108016 110870 NC_060929.1 JAKCWS010000051.1 97.93 True local misassembly 49456085 49462738 110871 117528 NC_060929.1 JAKCWS010000051.1 97.76 True local misassembly 49458666 49461518 117529 120383 NC_060929.1 JAKCWS010000051.1 97.82 True local misassembly 49456085 49461744 120384 126047 NC_060929.1 JAKCWS010000051.1 97.94 True CONTIG JAKCWS010000051.1 126047 misassembled 49456857 49460161 1 3305 NC_060929.1 JAKCWS010000052.1 97.74 True local misassembly 49456085 49462724 3306 9949 NC_060929.1 JAKCWS010000052.1 97.77 True local misassembly 49458652 49461518 9950 12818 NC_060929.1 JAKCWS010000052.1 97.99 True local misassembly 49456085 49461518 12819 18254 NC_060929.1 JAKCWS010000052.1 97.65 True local misassembly 49456085 49462738 18255 24912 NC_060929.1 JAKCWS010000052.1 97.82 True local misassembly 49457307 49461518 24913 29126 NC_060929.1 JAKCWS010000052.1 97.76 True local misassembly 49456085 49463425 29127 36465 NC_060929.1 JAKCWS010000052.1 97.75 True relocation, inconsistency = -21057 49442535 49443090 36632 37187 NC_060929.1 JAKCWS010000052.1 95.5 True indel: indel (<= 5bp) 49443091 49445128 37189 39226 NC_060929.1 JAKCWS010000052.1 98.14 True indel: stretch of mismatches 49445185 49446776 39283 40874 NC_060929.1 JAKCWS010000052.1 97.99 True local misassembly 49447329 49451696 41764 46132 NC_060929.1 JAKCWS010000052.1 97.96 True local misassembly 49447329 49453053 47538 53265 NC_060929.1 JAKCWS010000052.1 97.96 True local misassembly 49447291 49447846 53277 53832 NC_060929.1 JAKCWS010000052.1 95.5 True indel: indel (<= 5bp) 49447847 49449884 53834 55871 NC_060929.1 JAKCWS010000052.1 98.18 True indel: stretch of mismatches 49449941 49451549 55928 57536 NC_060929.1 JAKCWS010000052.1 98.07 True local misassembly 49447329 49454263 58409 65348 NC_060929.1 JAKCWS010000052.1 97.87 True local misassembly 49458681 49459410 65349 66078 NC_060929.1 JAKCWS010000052.1 98.14 True local misassembly 49454315 49461145 66079 72911 NC_060929.1 JAKCWS010000052.1 98.1 True relocation, inconsistency = -28530 49432616 49436587 72912 76885 NC_060929.1 JAKCWS010000052.1 98.18 True local misassembly 49432513 49433579 76886 77952 NC_060929.1 JAKCWS010000052.1 98.31 True indel: stretch of mismatches 49433636 49435378 78009 79751 NC_060929.1 JAKCWS010000052.1 98.57 True local misassembly 49435716 49436975 79752 81011 NC_060929.1 JAKCWS010000052.1 95.79 True indel: stretch of mismatches 49437032 49438334 81068 82370 NC_060929.1 JAKCWS010000052.1 98.23 True indel: stretch of mismatches 49438391 49440143 82427 84179 NC_060929.1 JAKCWS010000052.1 98.17 True indel: indel (<= 5bp) 49440144 49440725 84182 84763 NC_060929.1 JAKCWS010000052.1 97.94 True local misassembly 49443445 49445128 84764 86447 NC_060929.1 JAKCWS010000052.1 98.46 True indel: stretch of mismatches 49445185 49446428 86504 87747 NC_060929.1 JAKCWS010000052.1 97.99 True indel: indel (<= 5bp) 49446433 49446951 87748 88266 NC_060929.1 JAKCWS010000052.1 98.84 True local misassembly 49447291 49447846 88267 88822 NC_060929.1 JAKCWS010000052.1 95.14 True indel: indel (<= 5bp) 49447847 49449884 88824 90861 NC_060929.1 JAKCWS010000052.1 98.14 True indel: stretch of mismatches 49449941 49451549 90918 92526 NC_060929.1 JAKCWS010000052.1 98.26 True relocation, inconsistency = -16644 49435796 49436975 93417 94596 NC_060929.1 JAKCWS010000052.1 96.69 True indel: stretch of mismatches 49437032 49438334 94653 95955 NC_060929.1 JAKCWS010000052.1 98.23 True indel: stretch of mismatches 49438391 49440143 96012 97764 NC_060929.1 JAKCWS010000052.1 98.17 True indel: indel (<= 5bp) 49440144 49441786 97767 99409 NC_060929.1 JAKCWS010000052.1 98.17 True local misassembly 49442535 49443090 99818 100373 NC_060929.1 JAKCWS010000052.1 95.86 True indel: stretch of mismatches 49443271 49444805 100554 102088 NC_060929.1 JAKCWS010000052.1 98.12 True relocation, inconsistency = 9509 49454315 49461145 102089 108921 NC_060929.1 JAKCWS010000052.1 98.05 True local misassembly 49458770 49460183 108922 110335 NC_060929.1 JAKCWS010000052.1 98.7 True indel: indel (<= 5bp) 49460184 49461540 110338 111694 NC_060929.1 JAKCWS010000052.1 98.45 True indel: indel (<= 5bp) 49461541 49462456 111697 112612 NC_060929.1 JAKCWS010000052.1 98.14 True relocation, inconsistency = -101222 49361239 49363860 112617 115232 NC_060929.1 JAKCWS010000052.1 97.68 True fake: not a misassembly (possible transposable element) 49432151 49434993 115246 118082 NC_060929.1 JAKCWS010000052.1 97.65 True fake: not a misassembly (possible transposable element) 49361281 49362006 118083 118809 NC_060929.1 JAKCWS010000052.1 98.96 True CONTIG JAKCWS010000052.1 118933 misassembled 49553656 49555188 4151 5682 NC_060929.1 JAKCWS010000041.1 98.04 True relocation, inconsistency = -157316 49399962 49401345 7772 9155 NC_060929.1 JAKCWS010000041.1 97.54 True local misassembly 49401685 49402948 9156 10419 NC_060929.1 JAKCWS010000041.1 97.31 True local misassembly 49404040 49405241 11512 12714 NC_060929.1 JAKCWS010000041.1 98.5 True relocation, inconsistency = -2253569 47153988 47156373 15030 17416 NC_060929.1 JAKCWS010000041.1 97.95 True relocation, inconsistency = 2398309 49555238 49556676 17972 19411 NC_060929.1 JAKCWS010000041.1 98.68 True local misassembly 49550563 49553322 19416 22175 NC_060929.1 JAKCWS010000041.1 98.22 True relocation, inconsistency = 17331 49570654 49571656 22176 23178 NC_060929.1 JAKCWS010000041.1 97.52 True relocation, inconsistency = -212348 49360612 49361264 24482 25134 NC_060929.1 JAKCWS010000041.1 98.32 True local misassembly 49361604 49363373 25135 26904 NC_060929.1 JAKCWS010000041.1 97.23 True relocation, inconsistency = 30232 49394963 49396991 28262 30290 NC_060929.1 JAKCWS010000041.1 98.37 True relocation, inconsistency = 35331 49432362 49437447 30330 35417 NC_060929.1 JAKCWS010000041.1 97.94 True relocation, inconsistency = 53339 49492487 49494809 37118 39440 NC_060929.1 JAKCWS010000041.1 98.49 True fake: not a misassembly (possible transposable element) 49575967 49577450 40059 41543 NC_060929.1 JAKCWS010000041.1 98.18 True fake: not a misassembly (possible transposable element) 49500668 49502172 41904 43409 NC_060929.1 JAKCWS010000041.1 97.21 True relocation, inconsistency = -116526 49388144 49389122 45907 46886 NC_060929.1 JAKCWS010000041.1 98.06 True local misassembly 49389775 49391222 47539 48988 NC_060929.1 JAKCWS010000041.1 98.62 True fake: not a misassembly (possible transposable element) 49335880 49338265 49357 51743 NC_060929.1 JAKCWS010000041.1 97.99 True fake: not a misassembly (possible transposable element) 49389775 49391222 52299 53748 NC_060929.1 JAKCWS010000041.1 98.48 True relocation, inconsistency = -50955 49340863 49342341 54344 55823 NC_060929.1 JAKCWS010000041.1 98.65 True relocation, inconsistency = 8832 49351531 49353891 56181 58543 NC_060929.1 JAKCWS010000041.1 98.05 True local misassembly 49357282 49359628 58877 61225 NC_060929.1 JAKCWS010000041.1 98.17 True indel: stretch of mismatches 49359999 49363403 61596 65001 NC_060929.1 JAKCWS010000041.1 97.86 True relocation, inconsistency = -38729 49325032 49327392 65359 67720 NC_060929.1 JAKCWS010000041.1 98.26 True relocation, inconsistency = 29556 49357282 49359628 68054 70402 NC_060929.1 JAKCWS010000041.1 98.13 True indel: stretch of mismatches 49359999 49363403 70773 74178 NC_060929.1 JAKCWS010000041.1 97.8 True relocation, inconsistency = -30236 49333524 49335879 74535 76890 NC_060929.1 JAKCWS010000041.1 98.26 True indel: stretch of mismatches 49336315 49338201 77326 79212 NC_060929.1 JAKCWS010000041.1 98.57 True local misassembly 49338825 49340239 79837 81251 NC_060929.1 JAKCWS010000041.1 98.16 True relocation, inconsistency = 61142 49401817 49403427 81687 83297 NC_060929.1 JAKCWS010000041.1 98.08 True local misassembly 49404040 49406940 83910 86810 NC_060929.1 JAKCWS010000041.1 98.73 True relocation, inconsistency = 139302 49551023 49553277 91591 93845 NC_060929.1 JAKCWS010000041.1 98.63 True relocation, inconsistency = -164783 49388895 49391221 94246 96573 NC_060929.1 JAKCWS010000041.1 98.28 True relocation, inconsistency = -69979 49321698 49323996 97029 99328 NC_060929.1 JAKCWS010000041.1 98.39 True relocation, inconsistency = 62504 49388144 49389122 100972 101950 NC_060929.1 JAKCWS010000041.1 98.26 True local misassembly 49389775 49391207 102603 104037 NC_060929.1 JAKCWS010000041.1 98.4 True relocation, inconsistency = 63860 49455478 49456114 104448 105085 NC_060929.1 JAKCWS010000041.1 97.96 True fake: not a misassembly (possible transposable element) 49323556 49324543 107719 108707 NC_060929.1 JAKCWS010000041.1 97.88 True fake: not a misassembly (possible transposable element) 49455357 49456114 110098 110856 NC_060929.1 JAKCWS010000041.1 97.76 True relocation, inconsistency = -64197 49394551 49396029 113490 114967 NC_060929.1 JAKCWS010000041.1 97.97 True relocation, inconsistency = 48916 49445847 49448605 115869 118628 NC_060929.1 JAKCWS010000041.1 97.72 True local misassembly 49449244 49450903 119266 120925 NC_060929.1 JAKCWS010000041.1 97.95 True fake: not a misassembly (possible transposable element) 49402509 49405383 121449 124323 NC_060929.1 JAKCWS010000041.1 97.95 True fake: not a misassembly (possible transposable element) 49455478 49456114 127884 128521 NC_060929.1 JAKCWS010000041.1 97.96 True relocation, inconsistency = -131796 49326952 49328460 131155 132663 NC_060929.1 JAKCWS010000041.1 97.75 True fake: not a misassembly (possible transposable element) 49561869 49563636 132665 134433 NC_060929.1 JAKCWS010000041.1 97.34 True fake: not a misassembly (possible transposable element) 49335446 49336086 140318 140958 NC_060929.1 JAKCWS010000041.1 98.13 True relocation, inconsistency = 108022 49445847 49448605 142697 145456 NC_060929.1 JAKCWS010000041.1 97.68 True local misassembly 49449244 49450903 146094 147753 NC_060929.1 JAKCWS010000041.1 97.95 True relocation, inconsistency = -2104733 47347542 47350983 149125 152566 NC_060929.1 JAKCWS010000041.1 98.14 True local misassembly 47347569 47350983 152890 156303 NC_060929.1 JAKCWS010000041.1 98.13 True relocation, inconsistency = 2079933 49433931 49434938 159318 160325 NC_060929.1 JAKCWS010000041.1 97.42 True relocation, inconsistency = 136597 49577010 49577989 165800 166779 NC_060929.1 JAKCWS010000041.1 98.06 True relocation, inconsistency = -125053 49455357 49456114 169200 169958 NC_060929.1 JAKCWS010000041.1 97.1 True relocation, inconsistency = -46538 49415111 49416261 175493 176644 NC_060929.1 JAKCWS010000041.1 97.05 True local misassembly 49415111 49416261 181611 182762 NC_060929.1 JAKCWS010000041.1 97.05 True relocation, inconsistency = 16982 49435845 49437982 185364 187500 NC_060929.1 JAKCWS010000041.1 97.43 True local misassembly 49444554 49446147 189649 191241 NC_060929.1 JAKCWS010000041.1 97.62 True indel: stretch of mismatches 49446591 49450232 191685 195327 NC_060929.1 JAKCWS010000041.1 97.67 True relocation, inconsistency = 121651 49577010 49577989 200454 201433 NC_060929.1 JAKCWS010000041.1 98.27 True relocation, inconsistency = -137960 49442450 49443775 203854 205180 NC_060929.1 JAKCWS010000041.1 97.36 True fake: not a misassembly (possible transposable element) 49552347 49553277 205357 206287 NC_060929.1 JAKCWS010000041.1 97.85 True fake: not a misassembly (possible transposable element) 49447394 49449532 207780 209918 NC_060929.1 JAKCWS010000041.1 97.57 True relocation, inconsistency = -7127 49444554 49446147 212067 213660 NC_060929.1 JAKCWS010000041.1 97.62 True indel: stretch of mismatches 49446591 49449934 214104 217449 NC_060929.1 JAKCWS010000041.1 97.79 True relocation, inconsistency = -2168966 47281118 47281924 217599 218405 NC_060929.1 JAKCWS010000041.1 98.39 True relocation, inconsistency = 2160134 49443469 49448217 219816 224565 NC_060929.1 JAKCWS010000041.1 97.81 True fake: not a misassembly (possible transposable element) 49456085 49462447 224622 230984 NC_060929.1 JAKCWS010000041.1 97.64 True fake: not a misassembly (possible transposable element) 49448346 49449532 231485 232671 NC_060929.1 JAKCWS010000041.1 98.82 True relocation, inconsistency = 7131 49456855 49461518 232863 237528 NC_060929.1 JAKCWS010000041.1 97.74 True local misassembly 49456085 49462738 237529 244186 NC_060929.1 JAKCWS010000041.1 97.76 True local misassembly 49457307 49461518 244187 248400 NC_060929.1 JAKCWS010000041.1 97.79 True local misassembly 49456085 49462738 248401 255058 NC_060929.1 JAKCWS010000041.1 97.88 True local misassembly 49460025 49462107 255059 257145 NC_060929.1 JAKCWS010000041.1 98.01 True local misassembly 49456085 49462738 257574 264227 NC_060929.1 JAKCWS010000041.1 97.73 True local misassembly 49457307 49461518 264228 268432 NC_060929.1 JAKCWS010000041.1 97.63 True local misassembly 49456085 49461518 268433 273864 NC_060929.1 JAKCWS010000041.1 97.82 True local misassembly 49456085 49462738 273865 280522 NC_060929.1 JAKCWS010000041.1 97.84 True local misassembly 49457307 49461518 280523 284736 NC_060929.1 JAKCWS010000041.1 97.79 True local misassembly 49456085 49462738 284737 291394 NC_060929.1 JAKCWS010000041.1 97.72 True local misassembly 49457307 49460161 291395 294249 NC_060929.1 JAKCWS010000041.1 97.79 True local misassembly 49456085 49462738 294250 300907 NC_060929.1 JAKCWS010000041.1 97.78 True local misassembly 49457307 49461518 300908 305121 NC_060929.1 JAKCWS010000041.1 97.7 True local misassembly 49456085 49462738 305122 311779 NC_060929.1 JAKCWS010000041.1 97.79 True local misassembly 49458666 49461518 311780 314634 NC_060929.1 JAKCWS010000041.1 97.85 True local misassembly 49456085 49462738 314635 321292 NC_060929.1 JAKCWS010000041.1 97.87 True local misassembly 49457307 49461518 321293 325506 NC_060929.1 JAKCWS010000041.1 97.88 True local misassembly 49456085 49462738 325507 332164 NC_060929.1 JAKCWS010000041.1 97.76 True local misassembly 49457307 49461518 332165 336378 NC_060929.1 JAKCWS010000041.1 97.67 True local misassembly 49456085 49462738 336379 343036 NC_060929.1 JAKCWS010000041.1 97.78 True local misassembly 49458666 49462146 343037 346521 NC_060929.1 JAKCWS010000041.1 97.84 True relocation, inconsistency = -30228 49431919 49437977 346522 352579 NC_060929.1 JAKCWS010000041.1 98.0 True relocation, inconsistency = -22418 49415560 49417261 352580 354282 NC_060929.1 JAKCWS010000041.1 98.27 True relocation, inconsistency = -54010 49363955 49365535 354986 356566 NC_060929.1 JAKCWS010000041.1 97.34 True translocation 122191889 122193064 358012 359186 NC_060925.1 JAKCWS010000041.1 95.58 True translocation 49389508 49391098 360496 362086 NC_060929.1 JAKCWS010000041.1 99.06 True relocation, inconsistency = -13225 49389191 49391092 373404 375305 NC_060929.1 JAKCWS010000041.1 98.11 True relocation, inconsistency = 21742 49414597 49415224 377068 377694 NC_060929.1 JAKCWS010000041.1 98.73 True relocation, inconsistency = 34989 49450416 49452995 377897 380476 NC_060929.1 JAKCWS010000041.1 97.37 True relocation, inconsistency = -1012038 48441275 48441936 380794 381454 NC_060929.1 JAKCWS010000041.1 98.66 True relocation, inconsistency = 645497 49087434 49090277 381455 384297 NC_060929.1 JAKCWS010000041.1 97.93 True relocation, inconsistency = 71009 49161926 49162563 384937 385574 NC_060929.1 JAKCWS010000041.1 98.43 True relocation, inconsistency = -378818 48784747 48786886 386576 388715 NC_060929.1 JAKCWS010000041.1 98.41 True relocation, inconsistency = 578216 49365831 49367870 389444 391483 NC_060929.1 JAKCWS010000041.1 98.28 True relocation, inconsistency = -41448 49326423 49326958 391484 392019 NC_060929.1 JAKCWS010000041.1 98.3 True relocation, inconsistency = -17325 49309634 49311736 392020 394122 NC_060929.1 JAKCWS010000041.1 97.15 True relocation, inconsistency = 262626 49576307 49577594 396067 397354 NC_060929.1 JAKCWS010000041.1 97.98 True relocation, inconsistency = -171926 49407014 49407659 398700 399345 NC_060929.1 JAKCWS010000041.1 97.06 True relocation, inconsistency = -120598 49289557 49291523 401841 403807 NC_060929.1 JAKCWS010000041.1 97.26 True relocation, inconsistency = 113128 49404652 49405427 403808 404582 NC_060929.1 JAKCWS010000041.1 97.98 True indel: indel (<= 5bp) 49405835 49408393 404989 407545 NC_060929.1 JAKCWS010000041.1 98.44 True relocation, inconsistency = 49592 49457986 49460105 407546 409664 NC_060929.1 JAKCWS010000041.1 97.18 True relocation, inconsistency = -171551 49289557 49291523 410667 412633 NC_060929.1 JAKCWS010000041.1 97.26 True relocation, inconsistency = 113128 49404652 49405394 412634 413375 NC_060929.1 JAKCWS010000041.1 97.98 True relocation, inconsistency = -58764 49346631 49353751 413376 420493 NC_060929.1 JAKCWS010000041.1 97.88 True local misassembly 49352733 49354627 420494 422387 NC_060929.1 JAKCWS010000041.1 98.22 True relocation, inconsistency = 10532 49365160 49366361 422388 423587 NC_060929.1 JAKCWS010000041.1 98.18 True relocation, inconsistency = -45863 49320499 49324543 423588 427629 NC_060929.1 JAKCWS010000041.1 97.97 True relocation, inconsistency = 69635 49396527 49397229 429978 430680 NC_060929.1 JAKCWS010000041.1 97.58 True local misassembly 49397286 49398088 431415 432217 NC_060929.1 JAKCWS010000041.1 98.08 True relocation, inconsistency = 60125 49458214 49460860 432218 434866 NC_060929.1 JAKCWS010000041.1 98.08 True relocation, inconsistency = -48231 49413038 49415376 435275 437615 NC_060929.1 JAKCWS010000041.1 97.57 True fake: not a misassembly (possible transposable element) 49457977 49459251 443535 444808 NC_060929.1 JAKCWS010000041.1 97.57 True fake: not a misassembly (possible transposable element) 49425603 49428198 445130 447723 NC_060929.1 JAKCWS010000041.1 98.0 True relocation, inconsistency = 29213 49457800 49458722 448112 449034 NC_060929.1 JAKCWS010000041.1 97.51 True relocation, inconsistency = -93410 49366362 49367385 450084 451107 NC_060929.1 JAKCWS010000041.1 97.89 True relocation, inconsistency = -86294 49281092 49283402 451108 453415 NC_060929.1 JAKCWS010000041.1 97.01 True relocation, inconsistency = -1524384 47759019 47760881 453416 455278 NC_060929.1 JAKCWS010000041.1 98.76 True relocation, inconsistency = 1333809 49096978 49100466 457566 461056 NC_060929.1 JAKCWS010000041.1 98.14 True relocation, inconsistency = 318982 49419782 49422168 461390 463775 NC_060929.1 JAKCWS010000041.1 97.82 True relocation, inconsistency = -89001 49333524 49335886 464132 466494 NC_060929.1 JAKCWS010000041.1 98.26 True relocation, inconsistency = 104284 49440504 49442890 466828 469213 NC_060929.1 JAKCWS010000041.1 97.86 True relocation, inconsistency = 46554 49494526 49495444 474295 475213 NC_060929.1 JAKCWS010000041.1 97.39 True relocation, inconsistency = -74743 49421846 49424053 476358 478565 NC_060929.1 JAKCWS010000041.1 98.14 True relocation, inconsistency = 124361 49554558 49556676 484709 486827 NC_060929.1 JAKCWS010000041.1 98.63 True local misassembly 49553656 49556676 487206 490227 NC_060929.1 JAKCWS010000041.1 98.25 True relocation, inconsistency = -170221 49388144 49389122 491916 492895 NC_060929.1 JAKCWS010000041.1 97.86 True local misassembly 49389775 49391222 493548 494997 NC_060929.1 JAKCWS010000041.1 98.69 True fake: not a misassembly (possible transposable element) 49553656 49555188 498086 499617 NC_060929.1 JAKCWS010000041.1 98.04 True fake: not a misassembly (possible transposable element) 49399962 49401345 501707 503090 NC_060929.1 JAKCWS010000041.1 97.54 True local misassembly 49401685 49402948 503091 504354 NC_060929.1 JAKCWS010000041.1 97.31 True local misassembly 49404040 49405241 505447 506649 NC_060929.1 JAKCWS010000041.1 98.5 True fake: not a misassembly (possible transposable element) 47085369 47087754 508965 511351 NC_060929.1 JAKCWS010000041.1 97.86 True fake: not a misassembly (possible transposable element) 49415931 49417413 511907 513391 NC_060929.1 JAKCWS010000041.1 98.38 True relocation, inconsistency = 136589 49554558 49556721 513947 516110 NC_060929.1 JAKCWS010000041.1 98.71 True relocation, inconsistency = 13932 49570654 49571656 516111 517113 NC_060929.1 JAKCWS010000041.1 97.52 True relocation, inconsistency = -212348 49360612 49361264 518417 519069 NC_060929.1 JAKCWS010000041.1 98.32 True local misassembly 49361604 49363373 519070 520839 NC_060929.1 JAKCWS010000041.1 97.23 True relocation, inconsistency = 30232 49394963 49396991 522197 524225 NC_060929.1 JAKCWS010000041.1 98.33 True relocation, inconsistency = 35331 49432362 49437447 524265 529352 NC_060929.1 JAKCWS010000041.1 97.94 True relocation, inconsistency = 53339 49492487 49494809 531053 533375 NC_060929.1 JAKCWS010000041.1 98.49 True fake: not a misassembly (possible transposable element) 49575967 49577450 533994 535478 NC_060929.1 JAKCWS010000041.1 98.18 True fake: not a misassembly (possible transposable element) 49500668 49502172 535839 537344 NC_060929.1 JAKCWS010000041.1 97.21 True relocation, inconsistency = -116526 49388144 49389122 539842 540821 NC_060929.1 JAKCWS010000041.1 98.06 True local misassembly 49389775 49391222 541474 542923 NC_060929.1 JAKCWS010000041.1 98.62 True fake: not a misassembly (possible transposable element) 49309381 49311766 543292 545678 NC_060929.1 JAKCWS010000041.1 97.99 True fake: not a misassembly (possible transposable element) 49389775 49391222 546234 547683 NC_060929.1 JAKCWS010000041.1 98.41 True relocation, inconsistency = -77454 49314364 49315842 548279 549758 NC_060929.1 JAKCWS010000041.1 98.65 True relocation, inconsistency = 8832 49325032 49327392 550116 552478 NC_060929.1 JAKCWS010000041.1 98.05 True relocation, inconsistency = 29556 49357282 49359628 552812 555160 NC_060929.1 JAKCWS010000041.1 98.17 True indel: stretch of mismatches 49359999 49363403 555531 558936 NC_060929.1 JAKCWS010000041.1 97.86 True relocation, inconsistency = -12230 49351531 49353891 559294 561655 NC_060929.1 JAKCWS010000041.1 98.22 True local misassembly 49357282 49359628 561989 564337 NC_060929.1 JAKCWS010000041.1 98.13 True indel: stretch of mismatches 49359999 49363403 564708 568113 NC_060929.1 JAKCWS010000041.1 97.8 True relocation, inconsistency = -56735 49307025 49309380 568470 570825 NC_060929.1 JAKCWS010000041.1 98.26 True indel: stretch of mismatches 49309816 49311702 571261 573147 NC_060929.1 JAKCWS010000041.1 98.52 True local misassembly 49312326 49313740 573772 575186 NC_060929.1 JAKCWS010000041.1 98.16 True relocation, inconsistency = 87641 49401817 49403427 575622 577232 NC_060929.1 JAKCWS010000041.1 98.08 True local misassembly 49404040 49406940 577845 580745 NC_060929.1 JAKCWS010000041.1 98.73 True relocation, inconsistency = 139302 49551023 49553277 585526 587780 NC_060929.1 JAKCWS010000041.1 98.67 True relocation, inconsistency = -232044 49321698 49323960 588245 590508 NC_060929.1 JAKCWS010000041.1 98.23 True relocation, inconsistency = 23781 49348197 49350495 590964 593263 NC_060929.1 JAKCWS010000041.1 98.39 True relocation, inconsistency = 36005 49388144 49389122 594907 595885 NC_060929.1 JAKCWS010000041.1 98.26 True local misassembly 49389775 49391207 596538 597972 NC_060929.1 JAKCWS010000041.1 98.4 True relocation, inconsistency = 63860 49455478 49456114 598383 599020 NC_060929.1 JAKCWS010000041.1 97.96 True relocation, inconsistency = -135192 49323556 49324543 601654 602642 NC_060929.1 JAKCWS010000041.1 97.78 True CONTIG JAKCWS010000041.1 604878 misassembled 49448532 49453053 1 4524 NC_060929.1 JAKCWS010000042.1 98.23 True local misassembly 49447291 49447846 4536 5091 NC_060929.1 JAKCWS010000042.1 95.68 True indel: indel (<= 5bp) 49447847 49449884 5093 7130 NC_060929.1 JAKCWS010000042.1 97.84 True indel: stretch of mismatches 49449941 49451693 7187 8939 NC_060929.1 JAKCWS010000042.1 98.23 True indel: indel (<= 5bp) 49451694 49453028 8942 10276 NC_060929.1 JAKCWS010000042.1 98.31 True local misassembly 49456085 49460767 10277 14961 NC_060929.1 JAKCWS010000042.1 97.98 True local misassembly 49454315 49461145 14962 21793 NC_060929.1 JAKCWS010000042.1 98.07 True local misassembly 49456052 49457015 21794 22757 NC_060929.1 JAKCWS010000042.1 97.54 True indel: stretch of mismatches 49457072 49458374 22814 24116 NC_060929.1 JAKCWS010000042.1 98.23 True local misassembly 49458726 49460183 24128 25585 NC_060929.1 JAKCWS010000042.1 98.56 True indel: indel (<= 5bp) 49460184 49461540 25588 26944 NC_060929.1 JAKCWS010000042.1 98.45 True indel: indel (<= 5bp) 49461541 49462456 26947 27862 NC_060929.1 JAKCWS010000042.1 98.03 True relocation, inconsistency = -103601 49358860 49359627 27867 28634 NC_060929.1 JAKCWS010000042.1 98.7 True local misassembly 49360703 49364962 29710 33969 NC_060929.1 JAKCWS010000042.1 98.03 True local misassembly 49361237 49364962 33981 37707 NC_060929.1 JAKCWS010000042.1 97.96 True relocation, inconsistency = 79147 49444123 49445128 37721 38726 NC_060929.1 JAKCWS010000042.1 98.11 True indel: stretch of mismatches 49445185 49446951 38783 40549 NC_060929.1 JAKCWS010000042.1 98.42 True local misassembly 49447291 49447846 40550 41105 NC_060929.1 JAKCWS010000042.1 95.68 True indel: indel (<= 5bp) 49447847 49449884 41107 43144 NC_060929.1 JAKCWS010000042.1 97.84 True indel: stretch of mismatches 49449941 49451693 43201 44953 NC_060929.1 JAKCWS010000042.1 98.17 True indel: indel (<= 5bp) 49451694 49453028 44956 46290 NC_060929.1 JAKCWS010000042.1 98.16 True local misassembly 49456085 49462738 46291 52948 NC_060929.1 JAKCWS010000042.1 97.87 True local misassembly 49457307 49461518 52949 57162 NC_060929.1 JAKCWS010000042.1 97.88 True local misassembly 49456085 49458802 57163 59880 NC_060929.1 JAKCWS010000042.1 97.88 True local misassembly 49456085 49462738 59881 66538 NC_060929.1 JAKCWS010000042.1 97.88 True local misassembly 49457307 49462107 66539 71342 NC_060929.1 JAKCWS010000042.1 98.13 True local misassembly 49456085 49458802 71771 74487 NC_060929.1 JAKCWS010000042.1 98.01 True local misassembly 49456085 49462738 74488 81145 NC_060929.1 JAKCWS010000042.1 97.69 True local misassembly 49457307 49460161 81146 84000 NC_060929.1 JAKCWS010000042.1 97.96 True local misassembly 49456085 49461518 84001 89436 NC_060929.1 JAKCWS010000042.1 97.85 True local misassembly 49456085 49458802 89437 92154 NC_060929.1 JAKCWS010000042.1 97.72 True local misassembly 49456085 49463425 92155 99493 NC_060929.1 JAKCWS010000042.1 97.74 True relocation, inconsistency = -16301 49447329 49447846 99698 100215 NC_060929.1 JAKCWS010000042.1 96.14 True indel: indel (<= 5bp) 49447847 49449561 100217 101931 NC_060929.1 JAKCWS010000042.1 98.14 True relocation, inconsistency = -12909 49436653 49450190 101932 115125 NC_060929.1 JAKCWS010000042.1 95.53 True relocation, inconsistency = -2297050 47153141 47155686 115126 117667 NC_060929.1 JAKCWS010000042.1 97.46 True translocation 122143782 122144431 119045 119694 NC_060925.1 JAKCWS010000042.1 97.08 True translocation 49333530 49336086 120756 123312 NC_060929.1 JAKCWS010000042.1 97.46 True relocation, inconsistency = 120929 49457072 49458374 123369 124671 NC_060929.1 JAKCWS010000042.1 98.31 True local misassembly 49458726 49460183 124683 126140 NC_060929.1 JAKCWS010000042.1 98.56 True indel: indel (<= 5bp) 49460184 49461441 126143 127400 NC_060929.1 JAKCWS010000042.1 98.23 True relocation, inconsistency = -2378234 47083208 47087067 127401 131256 NC_060929.1 JAKCWS010000042.1 97.46 True relocation, inconsistency = 2429881 49517345 49519883 131653 134190 NC_060929.1 JAKCWS010000042.1 97.95 True relocation, inconsistency = -186508 49333530 49336086 134345 136900 NC_060929.1 JAKCWS010000042.1 97.38 True relocation, inconsistency = 23780 49361237 49364962 138271 141996 NC_060929.1 JAKCWS010000042.1 98.09 True relocation, inconsistency = 93752 49458726 49460161 142008 143443 NC_060929.1 JAKCWS010000042.1 98.56 True local misassembly 49456085 49462724 143444 150089 NC_060929.1 JAKCWS010000042.1 97.98 True local misassembly 49456085 49462738 150241 156882 NC_060929.1 JAKCWS010000042.1 97.69 True local misassembly 49456558 49462107 157154 162707 NC_060929.1 JAKCWS010000042.1 97.66 True local misassembly 49456085 49460161 163134 167208 NC_060929.1 JAKCWS010000042.1 97.76 True local misassembly 49456085 49458802 167209 169924 NC_060929.1 JAKCWS010000042.1 97.91 True local misassembly 49456085 49462738 169925 176582 NC_060929.1 JAKCWS010000042.1 98.03 True local misassembly 49457307 49461518 176583 180794 NC_060929.1 JAKCWS010000042.1 97.99 True local misassembly 49456085 49462738 180795 187452 NC_060929.1 JAKCWS010000042.1 98.05 True local misassembly 49457307 49461518 187453 191666 NC_060929.1 JAKCWS010000042.1 98.02 True local misassembly 49456085 49462045 191667 197631 NC_060929.1 JAKCWS010000042.1 98.07 True local misassembly 49456715 49462738 197732 203759 NC_060929.1 JAKCWS010000042.1 97.96 True local misassembly 49457307 49461543 203760 207997 NC_060929.1 JAKCWS010000042.1 98.08 True local misassembly 49456469 49460161 209718 213410 NC_060929.1 JAKCWS010000042.1 97.82 True local misassembly 49456085 49462738 213411 220068 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49457307 49462171 220069 224937 NC_060929.1 JAKCWS010000042.1 97.9 True local misassembly 49457080 49461518 224938 229378 NC_060929.1 JAKCWS010000042.1 97.92 True local misassembly 49456085 49462738 229379 236036 NC_060929.1 JAKCWS010000042.1 97.87 True local misassembly 49460025 49461518 236037 237532 NC_060929.1 JAKCWS010000042.1 97.91 True local misassembly 49456085 49460789 237533 242239 NC_060929.1 JAKCWS010000042.1 97.98 True local misassembly 49456375 49461518 242240 247385 NC_060929.1 JAKCWS010000042.1 97.58 True local misassembly 49456085 49462738 247386 254043 NC_060929.1 JAKCWS010000042.1 97.96 True local misassembly 49458666 49461518 254044 256898 NC_060929.1 JAKCWS010000042.1 97.91 True local misassembly 49456085 49462738 256899 263556 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49457307 49461518 263557 267770 NC_060929.1 JAKCWS010000042.1 97.81 True local misassembly 49456085 49462738 267771 274428 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49457307 49460161 274429 277283 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49456085 49462738 277284 283944 NC_060929.1 JAKCWS010000042.1 97.82 True local misassembly 49457307 49461518 283945 288154 NC_060929.1 JAKCWS010000042.1 97.78 True local misassembly 49456085 49462738 288155 294812 NC_060929.1 JAKCWS010000042.1 97.82 True local misassembly 49457307 49460161 294813 297667 NC_060929.1 JAKCWS010000042.1 97.85 True local misassembly 49456085 49462738 297668 304325 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49457307 49462107 304326 309130 NC_060929.1 JAKCWS010000042.1 97.94 True local misassembly 49456085 49462738 309559 316216 NC_060929.1 JAKCWS010000042.1 97.78 True local misassembly 49461382 49462107 316217 316944 NC_060929.1 JAKCWS010000042.1 97.88 True relocation, inconsistency = -74389 49389235 49391801 318461 321029 NC_060929.1 JAKCWS010000042.1 98.05 True relocation, inconsistency = 40765 49432567 49433584 321030 322047 NC_060929.1 JAKCWS010000042.1 98.17 True indel: stretch of mismatches 49433636 49435388 322099 323851 NC_060929.1 JAKCWS010000042.1 97.89 True indel: indel (<= 5bp) 49435389 49435907 323854 324372 NC_060929.1 JAKCWS010000042.1 98.65 True local misassembly 49437810 49440710 325937 328839 NC_060929.1 JAKCWS010000042.1 97.73 True relocation, inconsistency = -52992 49389235 49391801 330356 332924 NC_060929.1 JAKCWS010000042.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 333007 339717 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49457364 49462738 339718 345096 NC_060929.1 JAKCWS010000042.1 97.79 True local misassembly 49460025 49460750 345097 345824 NC_060929.1 JAKCWS010000042.1 97.46 True relocation, inconsistency = -23775 49437032 49438334 345881 347183 NC_060929.1 JAKCWS010000042.1 98.39 True indel: stretch of mismatches 49438391 49439353 347240 348202 NC_060929.1 JAKCWS010000042.1 98.23 True relocation, inconsistency = 19021 49458431 49460161 348259 349989 NC_060929.1 JAKCWS010000042.1 98.29 True local misassembly 49456085 49461543 349990 355449 NC_060929.1 JAKCWS010000042.1 97.91 True relocation, inconsistency = -30231 49433033 49433579 357170 357716 NC_060929.1 JAKCWS010000042.1 97.26 True indel: stretch of mismatches 49433636 49435388 357773 359525 NC_060929.1 JAKCWS010000042.1 98.0 True indel: indel (<= 5bp) 49435389 49436674 359528 360813 NC_060929.1 JAKCWS010000042.1 97.12 True local misassembly 49433636 49435388 361510 363262 NC_060929.1 JAKCWS010000042.1 98.4 True indel: indel (<= 5bp) 49435389 49435972 363265 363848 NC_060929.1 JAKCWS010000042.1 97.05 True local misassembly 49430877 49435955 363849 368927 NC_060929.1 JAKCWS010000042.1 98.39 True relocation, inconsistency = 19701 49456085 49462738 369356 376013 NC_060929.1 JAKCWS010000042.1 97.87 True local misassembly 49460025 49461912 376014 377905 NC_060929.1 JAKCWS010000042.1 97.98 True local misassembly 49456085 49462738 378529 385186 NC_060929.1 JAKCWS010000042.1 97.84 True local misassembly 49460025 49462107 385187 387273 NC_060929.1 JAKCWS010000042.1 97.88 True relocation, inconsistency = -28528 49433636 49435388 387330 389082 NC_060929.1 JAKCWS010000042.1 98.06 True local misassembly 49438785 49440143 389083 390441 NC_060929.1 JAKCWS010000042.1 98.12 True indel: indel (<= 5bp) 49440144 49440710 390444 391010 NC_060929.1 JAKCWS010000042.1 97.35 True local misassembly 49437032 49438389 391067 392424 NC_060929.1 JAKCWS010000042.1 98.38 True indel: indel (<= 5bp) 49438391 49440143 392425 394177 NC_060929.1 JAKCWS010000042.1 98.06 True indel: indel (<= 5bp) 49440144 49441356 394180 395392 NC_060929.1 JAKCWS010000042.1 97.61 True local misassembly 49436653 49448997 396123 408123 NC_060929.1 JAKCWS010000042.1 95.28 True local misassembly 49442543 49443090 408124 408671 NC_060929.1 JAKCWS010000042.1 95.5 True indel: indel (<= 5bp) 49443091 49443608 408673 409190 NC_060929.1 JAKCWS010000042.1 97.85 True local misassembly 49446327 49450920 409191 413785 NC_060929.1 JAKCWS010000042.1 98.05 True relocation, inconsistency = -14268 49436653 49450190 413786 426979 NC_060929.1 JAKCWS010000042.1 95.51 True relocation, inconsistency = -2297050 47153141 47155686 426980 429521 NC_060929.1 JAKCWS010000042.1 97.46 True relocation, inconsistency = 2151314 49307031 49309587 429552 432108 NC_060929.1 JAKCWS010000042.1 97.46 True relocation, inconsistency = 147428 49457072 49458374 432165 433467 NC_060929.1 JAKCWS010000042.1 98.31 True local misassembly 49458726 49460183 433479 434936 NC_060929.1 JAKCWS010000042.1 98.56 True indel: indel (<= 5bp) 49460184 49461441 434939 436196 NC_060929.1 JAKCWS010000042.1 98.31 True relocation, inconsistency = -2378234 47083208 47087067 436197 440052 NC_060929.1 JAKCWS010000042.1 97.49 True translocation 122143782 122144431 441430 442079 NC_060925.1 JAKCWS010000042.1 97.08 True translocation 49348200 49352021 443201 447023 NC_060929.1 JAKCWS010000042.1 97.72 True relocation, inconsistency = 9172 49361237 49364962 447067 450792 NC_060929.1 JAKCWS010000042.1 98.07 True relocation, inconsistency = 93752 49458726 49460161 450804 452239 NC_060929.1 JAKCWS010000042.1 98.56 True local misassembly 49456085 49462724 452240 458885 NC_060929.1 JAKCWS010000042.1 98.0 True local misassembly 49456085 49462738 459037 465678 NC_060929.1 JAKCWS010000042.1 97.67 True local misassembly 49456558 49462738 465950 472134 NC_060929.1 JAKCWS010000042.1 97.72 True local misassembly 49461382 49462107 472135 472862 NC_060929.1 JAKCWS010000042.1 97.94 True local misassembly 49456085 49460161 473289 477365 NC_060929.1 JAKCWS010000042.1 97.88 True local misassembly 49456085 49461518 477366 482797 NC_060929.1 JAKCWS010000042.1 97.87 True local misassembly 49456085 49462738 482798 489455 NC_060929.1 JAKCWS010000042.1 98.03 True local misassembly 49458666 49461518 489456 492310 NC_060929.1 JAKCWS010000042.1 97.99 True local misassembly 49456085 49461518 492311 497744 NC_060929.1 JAKCWS010000042.1 98.02 True local misassembly 49456085 49461518 497745 503179 NC_060929.1 JAKCWS010000042.1 98.05 True local misassembly 49456085 49462738 503180 509837 NC_060929.1 JAKCWS010000042.1 98.0 True local misassembly 49458666 49460789 509838 511962 NC_060929.1 JAKCWS010000042.1 97.85 True local misassembly 49456715 49462738 511963 517990 NC_060929.1 JAKCWS010000042.1 97.96 True local misassembly 49457307 49461543 517991 522228 NC_060929.1 JAKCWS010000042.1 98.06 True local misassembly 49456469 49461518 523949 529000 NC_060929.1 JAKCWS010000042.1 97.8 True local misassembly 49456085 49462738 529001 535658 NC_060929.1 JAKCWS010000042.1 97.82 True CONTIG JAKCWS010000042.1 535690 misassembled 49457634 49462107 1 4478 NC_060929.1 JAKCWS010000043.1 97.9 True relocation, inconsistency = -15962 49447343 49453617 5676 11954 NC_060929.1 JAKCWS010000043.1 97.87 True relocation, inconsistency = -17324 49437810 49440710 13471 16373 NC_060929.1 JAKCWS010000043.1 97.69 True relocation, inconsistency = -52992 49389235 49391801 17890 20458 NC_060929.1 JAKCWS010000043.1 98.09 True relocation, inconsistency = 64201 49456085 49461518 20541 25976 NC_060929.1 JAKCWS010000043.1 98.01 True local misassembly 49456085 49462795 25977 32687 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49457364 49462738 32688 38066 NC_060929.1 JAKCWS010000043.1 97.79 True local misassembly 49460025 49460750 38067 38794 NC_060929.1 JAKCWS010000043.1 97.46 True relocation, inconsistency = -23775 49437032 49438334 38851 40153 NC_060929.1 JAKCWS010000043.1 98.39 True indel: stretch of mismatches 49438391 49439353 40210 41172 NC_060929.1 JAKCWS010000043.1 98.23 True relocation, inconsistency = 16303 49456085 49462738 41601 48258 NC_060929.1 JAKCWS010000043.1 97.87 True relocation, inconsistency = -31587 49433033 49435955 50140 53064 NC_060929.1 JAKCWS010000043.1 97.81 True local misassembly 49433636 49435388 53121 54873 NC_060929.1 JAKCWS010000043.1 98.4 True indel: indel (<= 5bp) 49435389 49435972 54876 55459 NC_060929.1 JAKCWS010000043.1 97.05 True local misassembly 49430877 49435955 55460 60538 NC_060929.1 JAKCWS010000043.1 98.39 True relocation, inconsistency = 19701 49456085 49462738 60967 67624 NC_060929.1 JAKCWS010000043.1 97.87 True local misassembly 49460025 49461912 67625 69516 NC_060929.1 JAKCWS010000043.1 97.98 True local misassembly 49456085 49462738 70140 76797 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49460025 49462107 76798 78884 NC_060929.1 JAKCWS010000043.1 97.86 True relocation, inconsistency = -25131 49437047 49438334 78955 80242 NC_060929.1 JAKCWS010000043.1 98.45 True indel: stretch of mismatches 49438391 49440143 80299 82051 NC_060929.1 JAKCWS010000043.1 98.12 True indel: indel (<= 5bp) 49440144 49440710 82054 82620 NC_060929.1 JAKCWS010000043.1 97.35 True relocation, inconsistency = 14946 49456085 49460767 83049 87732 NC_060929.1 JAKCWS010000043.1 97.84 True relocation, inconsistency = -24115 49436653 49448997 87733 99733 NC_060929.1 JAKCWS010000043.1 95.27 True local misassembly 49442543 49443090 99734 100281 NC_060929.1 JAKCWS010000043.1 95.5 True indel: indel (<= 5bp) 49443091 49443608 100283 100800 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49446327 49450920 100801 105395 NC_060929.1 JAKCWS010000043.1 98.06 True relocation, inconsistency = -14268 49436653 49449532 105396 117931 NC_060929.1 JAKCWS010000043.1 95.42 True relocation, inconsistency = -458955 48991768 48993313 119122 120667 NC_060929.1 JAKCWS010000043.1 97.61 True relocation, inconsistency = 313563 49307031 49309587 120822 123378 NC_060929.1 JAKCWS010000043.1 97.46 True relocation, inconsistency = 147428 49457072 49458374 123435 124737 NC_060929.1 JAKCWS010000043.1 98.31 True local misassembly 49458726 49460183 124749 126206 NC_060929.1 JAKCWS010000043.1 98.56 True indel: indel (<= 5bp) 49460184 49461441 126209 127466 NC_060929.1 JAKCWS010000043.1 98.31 True relocation, inconsistency = -2309615 47151827 47155686 127467 131322 NC_060929.1 JAKCWS010000043.1 97.49 True relocation, inconsistency = 2361262 49517345 49519883 131719 134256 NC_060929.1 JAKCWS010000043.1 97.95 True relocation, inconsistency = -198397 49321701 49325522 134471 138293 NC_060929.1 JAKCWS010000043.1 97.72 True relocation, inconsistency = 133160 49458726 49460161 138337 139772 NC_060929.1 JAKCWS010000043.1 98.49 True local misassembly 49456085 49462724 139773 146418 NC_060929.1 JAKCWS010000043.1 98.0 True local misassembly 49456085 49462738 146570 153211 NC_060929.1 JAKCWS010000043.1 97.67 True local misassembly 49456558 49462107 153483 159036 NC_060929.1 JAKCWS010000043.1 97.62 True local misassembly 49456085 49462727 159463 166109 NC_060929.1 JAKCWS010000043.1 97.88 True local misassembly 49458657 49461518 166110 168971 NC_060929.1 JAKCWS010000043.1 97.86 True local misassembly 49456085 49461518 168972 174405 NC_060929.1 JAKCWS010000043.1 97.93 True local misassembly 49456085 49462738 174406 181063 NC_060929.1 JAKCWS010000043.1 98.03 True local misassembly 49457307 49461518 181064 185275 NC_060929.1 JAKCWS010000043.1 98.0 True local misassembly 49456085 49461518 185276 190710 NC_060929.1 JAKCWS010000043.1 98.06 True local misassembly 49456085 49462738 190711 197368 NC_060929.1 JAKCWS010000043.1 97.99 True local misassembly 49457307 49460789 197369 200852 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49456715 49462738 200853 206880 NC_060929.1 JAKCWS010000043.1 97.91 True local misassembly 49457307 49461543 206881 211118 NC_060929.1 JAKCWS010000043.1 98.06 True local misassembly 49456469 49457443 212839 213813 NC_060929.1 JAKCWS010000043.1 97.8 True local misassembly 49456085 49462738 213814 220471 NC_060929.1 JAKCWS010000043.1 97.88 True local misassembly 49457307 49461518 220472 224685 NC_060929.1 JAKCWS010000043.1 97.82 True local misassembly 49456085 49462185 224686 230790 NC_060929.1 JAKCWS010000043.1 97.92 True local misassembly 49457094 49461518 230791 235217 NC_060929.1 JAKCWS010000043.1 97.9 True local misassembly 49456085 49462738 235218 241875 NC_060929.1 JAKCWS010000043.1 97.91 True local misassembly 49458666 49460161 241876 243371 NC_060929.1 JAKCWS010000043.1 97.91 True local misassembly 49456085 49462146 243372 249437 NC_060929.1 JAKCWS010000043.1 97.99 True local misassembly 49456375 49460161 249438 253224 NC_060929.1 JAKCWS010000043.1 97.68 True local misassembly 49456085 49462738 253225 259882 NC_060929.1 JAKCWS010000043.1 97.97 True local misassembly 49457307 49461518 259883 264096 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49456085 49462738 264097 270754 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49457307 49461518 270755 274968 NC_060929.1 JAKCWS010000043.1 97.79 True local misassembly 49456085 49462738 274969 281626 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49457307 49461518 281627 285840 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49456085 49462738 285841 292501 NC_060929.1 JAKCWS010000043.1 97.78 True local misassembly 49457307 49461518 292502 296715 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49456085 49462738 296716 303373 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49457307 49461518 303374 307587 NC_060929.1 JAKCWS010000043.1 97.81 True local misassembly 49456085 49461518 307588 313019 NC_060929.1 JAKCWS010000043.1 97.78 True local misassembly 49456085 49462738 313020 319677 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49457307 49461518 319678 323891 NC_060929.1 JAKCWS010000043.1 97.79 True local misassembly 49456085 49462738 323892 330545 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49458666 49460161 330546 332041 NC_060929.1 JAKCWS010000043.1 97.88 True local misassembly 49456085 49462107 332042 338068 NC_060929.1 JAKCWS010000043.1 97.96 True local misassembly 49456085 49462738 338497 345154 NC_060929.1 JAKCWS010000043.1 97.81 True local misassembly 49461382 49462107 345155 345882 NC_060929.1 JAKCWS010000043.1 97.91 True relocation, inconsistency = -74389 49389235 49389938 347399 348101 NC_060929.1 JAKCWS010000043.1 97.98 True relocation, inconsistency = 66916 49456855 49462107 348102 353358 NC_060929.1 JAKCWS010000043.1 97.93 True relocation, inconsistency = -74389 49389235 49391801 354875 357443 NC_060929.1 JAKCWS010000043.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 357526 364236 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49460082 49461543 364237 365700 NC_060929.1 JAKCWS010000043.1 97.66 True relocation, inconsistency = -72691 49389235 49391801 366083 368651 NC_060929.1 JAKCWS010000043.1 98.09 True relocation, inconsistency = 64201 49456085 49462795 368734 375444 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49457364 49462738 375445 380823 NC_060929.1 JAKCWS010000043.1 97.79 True local misassembly 49460025 49460750 380824 381551 NC_060929.1 JAKCWS010000043.1 97.46 True relocation, inconsistency = -23775 49437032 49438334 381608 382910 NC_060929.1 JAKCWS010000043.1 98.39 True indel: stretch of mismatches 49438391 49439353 382967 383929 NC_060929.1 JAKCWS010000043.1 98.23 True relocation, inconsistency = 16303 49456085 49462738 384358 391015 NC_060929.1 JAKCWS010000043.1 97.85 True relocation, inconsistency = -31587 49433033 49433579 392897 393443 NC_060929.1 JAKCWS010000043.1 97.26 True indel: stretch of mismatches 49433636 49435388 393500 395252 NC_060929.1 JAKCWS010000043.1 98.06 True indel: indel (<= 5bp) 49435389 49436674 395255 396540 NC_060929.1 JAKCWS010000043.1 97.12 True local misassembly 49433636 49435388 397237 398989 NC_060929.1 JAKCWS010000043.1 98.4 True indel: indel (<= 5bp) 49435389 49435972 398992 399575 NC_060929.1 JAKCWS010000043.1 97.05 True local misassembly 49430877 49435955 399576 404654 NC_060929.1 JAKCWS010000043.1 98.39 True relocation, inconsistency = 19701 49456085 49462738 405083 411740 NC_060929.1 JAKCWS010000043.1 97.81 True local misassembly 49458666 49461912 411741 414991 NC_060929.1 JAKCWS010000043.1 97.96 True local misassembly 49456085 49462738 415615 422272 NC_060929.1 JAKCWS010000043.1 97.84 True local misassembly 49460025 49462107 422273 424359 NC_060929.1 JAKCWS010000043.1 97.88 True relocation, inconsistency = -25132 49437032 49438334 424416 425718 NC_060929.1 JAKCWS010000043.1 98.31 True indel: stretch of mismatches 49438391 49440143 425775 427527 NC_060929.1 JAKCWS010000043.1 98.12 True indel: indel (<= 5bp) 49440144 49440710 427530 428096 NC_060929.1 JAKCWS010000043.1 97.35 True relocation, inconsistency = 14946 49456085 49460767 428525 433208 NC_060929.1 JAKCWS010000043.1 97.84 True relocation, inconsistency = -24115 49436653 49448997 433209 445209 NC_060929.1 JAKCWS010000043.1 95.26 True local misassembly 49442543 49443090 445210 445757 NC_060929.1 JAKCWS010000043.1 95.5 True indel: indel (<= 5bp) 49443091 49443608 445759 446276 NC_060929.1 JAKCWS010000043.1 97.85 True local misassembly 49446327 49450920 446277 450871 NC_060929.1 JAKCWS010000043.1 98.06 True relocation, inconsistency = -14268 49436653 49450190 450872 464065 NC_060929.1 JAKCWS010000043.1 95.51 True relocation, inconsistency = -2365669 47084522 47087067 464066 466607 NC_060929.1 JAKCWS010000043.1 97.46 True relocation, inconsistency = 2246432 49333530 49336086 466638 469194 NC_060929.1 JAKCWS010000043.1 97.46 True relocation, inconsistency = 120929 49457072 49458374 469251 470553 NC_060929.1 JAKCWS010000043.1 98.31 True local misassembly 49458726 49460183 470565 472022 NC_060929.1 JAKCWS010000043.1 98.56 True indel: indel (<= 5bp) 49460184 49461441 472025 473282 NC_060929.1 JAKCWS010000043.1 98.31 True relocation, inconsistency = -2378234 47083208 47087067 473283 477138 NC_060929.1 JAKCWS010000043.1 97.49 True relocation, inconsistency = 2429881 49517345 49519883 477535 480072 NC_060929.1 JAKCWS010000043.1 97.91 True relocation, inconsistency = -186508 49333530 49336086 480227 482782 NC_060929.1 JAKCWS010000043.1 97.46 True local misassembly 49337458 49338812 484153 485508 NC_060929.1 JAKCWS010000043.1 98.38 True relocation, inconsistency = 117192 49456085 49456692 485589 486196 NC_060929.1 JAKCWS010000043.1 98.17 True local misassembly 49454315 49462738 486197 494626 NC_060929.1 JAKCWS010000043.1 97.97 True local misassembly 49457307 49458802 494627 496122 NC_060929.1 JAKCWS010000043.1 97.63 True local misassembly 49456085 49462738 496123 502764 NC_060929.1 JAKCWS010000043.1 97.67 True local misassembly 49456558 49462107 503036 508589 NC_060929.1 JAKCWS010000043.1 97.66 True local misassembly 49456085 49461518 509016 514451 NC_060929.1 JAKCWS010000043.1 97.88 True local misassembly 49456085 49458802 514452 517165 NC_060929.1 JAKCWS010000043.1 97.88 True local misassembly 49456085 49462738 517166 523823 NC_060929.1 JAKCWS010000043.1 98.0 True local misassembly 49457307 49462738 523824 529259 NC_060929.1 JAKCWS010000043.1 98.05 True local misassembly 49457307 49461364 529260 533317 NC_060929.1 JAKCWS010000043.1 98.05 True CONTIG JAKCWS010000043.1 533317 misassembled 49431930 49434598 25 2692 NC_060929.1 JAKCWS010000044.1 98.28 True relocation, inconsistency = 23776 49458431 49460161 2749 4479 NC_060929.1 JAKCWS010000044.1 98.35 True local misassembly 49456085 49461543 4480 9939 NC_060929.1 JAKCWS010000044.1 97.91 True local misassembly 49456469 49460750 11660 15943 NC_060929.1 JAKCWS010000044.1 97.71 True local misassembly 49458431 49460183 16000 17752 NC_060929.1 JAKCWS010000044.1 98.23 True indel: indel (<= 5bp) 49460184 49461540 17755 19111 NC_060929.1 JAKCWS010000044.1 98.01 True indel: indel (<= 5bp) 49461541 49462107 19114 19680 NC_060929.1 JAKCWS010000044.1 97.88 True local misassembly 49458431 49460183 19737 21489 NC_060929.1 JAKCWS010000044.1 98.29 True indel: indel (<= 5bp) 49460184 49461540 21492 22848 NC_060929.1 JAKCWS010000044.1 98.31 True indel: indel (<= 5bp) 49461541 49462107 22851 23417 NC_060929.1 JAKCWS010000044.1 98.77 True local misassembly 49456085 49462738 23846 30503 NC_060929.1 JAKCWS010000044.1 97.82 True local misassembly 49458666 49461912 30504 33754 NC_060929.1 JAKCWS010000044.1 97.98 True local misassembly 49456085 49462738 34378 41035 NC_060929.1 JAKCWS010000044.1 97.82 True local misassembly 49461382 49462107 41036 41763 NC_060929.1 JAKCWS010000044.1 97.84 True local misassembly 49456085 49462738 42192 48849 NC_060929.1 JAKCWS010000044.1 97.88 True local misassembly 49457307 49461518 48850 53063 NC_060929.1 JAKCWS010000044.1 97.87 True local misassembly 49456085 49462738 53064 59721 NC_060929.1 JAKCWS010000044.1 97.91 True local misassembly 49457307 49461518 59722 63935 NC_060929.1 JAKCWS010000044.1 97.9 True local misassembly 49456085 49462738 63936 70593 NC_060929.1 JAKCWS010000044.1 97.82 True local misassembly 49458666 49461518 70594 73448 NC_060929.1 JAKCWS010000044.1 97.91 True local misassembly 49456085 49462738 73449 80106 NC_060929.1 JAKCWS010000044.1 97.76 True local misassembly 49457307 49461518 80107 84320 NC_060929.1 JAKCWS010000044.1 97.82 True local misassembly 49456085 49462107 84321 90347 NC_060929.1 JAKCWS010000044.1 97.99 True relocation, inconsistency = -15961 49447329 49453617 91530 97823 NC_060929.1 JAKCWS010000044.1 98.0 True local misassembly 49448526 49453028 97824 102328 NC_060929.1 JAKCWS010000044.1 97.92 True local misassembly 49456085 49462724 102329 108971 NC_060929.1 JAKCWS010000044.1 97.86 True local misassembly 49457293 49462107 108972 113789 NC_060929.1 JAKCWS010000044.1 97.89 True relocation, inconsistency = -18342 49447343 49454263 117367 124291 NC_060929.1 JAKCWS010000044.1 97.91 True local misassembly 49460040 49461866 124292 126122 NC_060929.1 JAKCWS010000044.1 98.12 True relocation, inconsistency = -101222 49360645 49362226 126123 127704 NC_060929.1 JAKCWS010000044.1 98.23 True relocation, inconsistency = 68615 49430881 49434637 127744 131498 NC_060929.1 JAKCWS010000044.1 98.15 True relocation, inconsistency = 21737 49456375 49458802 131499 133926 NC_060929.1 JAKCWS010000044.1 97.83 True local misassembly 49456085 49462738 133927 140584 NC_060929.1 JAKCWS010000044.1 97.88 True local misassembly 49457307 49462455 140585 145737 NC_060929.1 JAKCWS010000044.1 97.93 True relocation, inconsistency = -30907 49431549 49435955 145738 150145 NC_060929.1 JAKCWS010000044.1 98.18 True relocation, inconsistency = 19701 49456085 49462738 150574 157231 NC_060929.1 JAKCWS010000044.1 97.97 True local misassembly 49458666 49462456 157232 161026 NC_060929.1 JAKCWS010000044.1 98.01 True relocation, inconsistency = -29887 49432572 49436034 161029 164493 NC_060929.1 JAKCWS010000044.1 98.1 True relocation, inconsistency = 20041 49456085 49462738 164503 171160 NC_060929.1 JAKCWS010000044.1 97.87 True local misassembly 49460025 49461518 171161 172656 NC_060929.1 JAKCWS010000044.1 97.88 True local misassembly 49456085 49462738 172657 179314 NC_060929.1 JAKCWS010000044.1 97.85 True local misassembly 49458666 49462058 179315 182711 NC_060929.1 JAKCWS010000044.1 97.86 True relocation, inconsistency = -1303852 48159093 48159612 183598 184117 NC_060929.1 JAKCWS010000044.1 97.88 True relocation, inconsistency = 1200931 49361753 49363403 185327 186977 NC_060929.1 JAKCWS010000044.1 97.4 True relocation, inconsistency = 194338 49558304 49559383 187540 188619 NC_060929.1 JAKCWS010000044.1 97.78 True local misassembly 49559724 49560601 188620 189497 NC_060929.1 JAKCWS010000044.1 96.36 True relocation, inconsistency = -166820 49397276 49400914 192992 196616 NC_060929.1 JAKCWS010000044.1 97.5 True relocation, inconsistency = -54685 49348500 49350465 198887 200853 NC_060929.1 JAKCWS010000044.1 98.42 True local misassembly 49351589 49353859 201979 204245 NC_060929.1 JAKCWS010000044.1 98.06 True local misassembly 49361374 49361981 204966 205573 NC_060929.1 JAKCWS010000044.1 98.68 True relocation, inconsistency = -28877 49333524 49335886 205993 208347 NC_060929.1 JAKCWS010000044.1 97.93 True relocation, inconsistency = 109382 49445269 49446257 208348 209336 NC_060929.1 JAKCWS010000044.1 98.37 True local misassembly 49447322 49449684 210402 212760 NC_060929.1 JAKCWS010000044.1 98.01 True relocation, inconsistency = 123689 49576720 49577450 216107 216837 NC_060929.1 JAKCWS010000044.1 98.22 True relocation, inconsistency = -263306 49316482 49318221 219175 220913 NC_060929.1 JAKCWS010000044.1 98.45 True relocation, inconsistency = -2193774 47127215 47127953 223681 224419 NC_060929.1 JAKCWS010000044.1 97.97 True indel: indel (<= 5bp) 47127955 47129044 224420 225509 NC_060929.1 JAKCWS010000044.1 98.62 True local misassembly 47127215 47127953 228776 229514 NC_060929.1 JAKCWS010000044.1 98.11 True indel: indel (<= 5bp) 47127955 47129044 229515 230604 NC_060929.1 JAKCWS010000044.1 98.72 True local misassembly 47127215 47127803 233871 234459 NC_060929.1 JAKCWS010000044.1 97.97 True relocation, inconsistency = 2188678 49316482 49318221 234460 236198 NC_060929.1 JAKCWS010000044.1 98.45 True relocation, inconsistency = 40088 49363308 49364693 241197 242582 NC_060929.1 JAKCWS010000044.1 97.98 True local misassembly 49366480 49367134 244369 245023 NC_060929.1 JAKCWS010000044.1 98.32 True relocation, inconsistency = 92392 49466554 49467156 252051 252653 NC_060929.1 JAKCWS010000044.1 97.01 True relocation, inconsistency = -144029 49325090 49327392 254616 256915 NC_060929.1 JAKCWS010000044.1 98.0 True relocation, inconsistency = 221515 49551019 49553277 259027 261281 NC_060929.1 JAKCWS010000044.1 98.54 True relocation, inconsistency = -233060 49321694 49323996 262758 265057 NC_060929.1 JAKCWS010000044.1 98.13 True relocation, inconsistency = -1149297 48176201 48177283 266559 267641 NC_060929.1 JAKCWS010000044.1 98.34 True relocation, inconsistency = 1172402 49351847 49353861 269803 271813 NC_060929.1 JAKCWS010000044.1 98.26 True local misassembly 49356142 49357628 274091 275572 NC_060929.1 JAKCWS010000044.1 98.45 True relocation, inconsistency = -12229 49346499 49347376 276672 277549 NC_060929.1 JAKCWS010000044.1 98.97 True relocation, inconsistency = -43143 49309699 49311766 283015 285078 NC_060929.1 JAKCWS010000044.1 97.3 True relocation, inconsistency = 113798 49426664 49427510 286178 287024 NC_060929.1 JAKCWS010000044.1 97.99 True relocation, inconsistency = -30913 49397080 49397709 287507 288132 NC_060929.1 JAKCWS010000044.1 97.3 True CONTIG JAKCWS010000044.1 291924 misassembled 49458666 49460852 2213 23 NC_060929.1 JAKCWS010000045.1 97.86 True local misassembly 49456085 49462738 8873 2214 NC_060929.1 JAKCWS010000045.1 97.9 True local misassembly 49457307 49461518 13087 8874 NC_060929.1 JAKCWS010000045.1 97.87 True local misassembly 49456085 49462738 19745 13088 NC_060929.1 JAKCWS010000045.1 97.79 True local misassembly 49458666 49461518 22600 19746 NC_060929.1 JAKCWS010000045.1 97.94 True local misassembly 49456085 49462738 29258 22601 NC_060929.1 JAKCWS010000045.1 98.0 True local misassembly 49457307 49461518 33472 29259 NC_060929.1 JAKCWS010000045.1 97.94 True local misassembly 49456085 49462738 40130 33473 NC_060929.1 JAKCWS010000045.1 97.87 True local misassembly 49457307 49461518 44344 40131 NC_060929.1 JAKCWS010000045.1 97.78 True local misassembly 49456493 49462738 50594 44345 NC_060929.1 JAKCWS010000045.1 97.54 True relocation, inconsistency = 20380 49435389 49436112 51318 50595 NC_060929.1 JAKCWS010000045.1 97.79 True indel: indel (<= 5bp) 49433636 49435388 53073 51321 NC_060929.1 JAKCWS010000045.1 98.35 True indel: stretch of mismatches 49432277 49433579 54432 53130 NC_060929.1 JAKCWS010000045.1 98.16 True local misassembly 49435389 49436293 55735 54831 NC_060929.1 JAKCWS010000045.1 97.79 True indel: indel (<= 5bp) 49433636 49435388 57490 55738 NC_060929.1 JAKCWS010000045.1 98.23 True indel: stretch of mismatches 49432277 49433579 58849 57547 NC_060929.1 JAKCWS010000045.1 98.16 True relocation, inconsistency = -30567 49457307 49462447 64390 59246 NC_060929.1 JAKCWS010000045.1 97.88 True local misassembly 49456085 49462738 71048 64391 NC_060929.1 JAKCWS010000045.1 97.79 True local misassembly 49457307 49461518 75262 71049 NC_060929.1 JAKCWS010000045.1 97.78 True local misassembly 49456085 49462738 81920 75263 NC_060929.1 JAKCWS010000045.1 97.84 True local misassembly 49457307 49461518 86134 81921 NC_060929.1 JAKCWS010000045.1 97.75 True local misassembly 49456085 49462738 92792 86135 NC_060929.1 JAKCWS010000045.1 97.79 True local misassembly 49457307 49461518 97006 92793 NC_060929.1 JAKCWS010000045.1 97.78 True local misassembly 49456085 49462738 103664 97007 NC_060929.1 JAKCWS010000045.1 97.85 True local misassembly 49456085 49461518 109100 103665 NC_060929.1 JAKCWS010000045.1 97.78 True relocation, inconsistency = 95451 49360021 49360560 109713 109174 NC_060929.1 JAKCWS010000045.1 97.59 True local misassembly 49358438 49359340 110616 109714 NC_060929.1 JAKCWS010000045.1 98.45 True relocation, inconsistency = -65900 49422979 49424054 111975 110900 NC_060929.1 JAKCWS010000045.1 98.7 True relocation, inconsistency = -39400 49457307 49462111 117051 112243 NC_060929.1 JAKCWS010000045.1 97.96 True local misassembly 49456085 49462738 123709 117052 NC_060929.1 JAKCWS010000045.1 97.82 True local misassembly 49457307 49461518 127923 123710 NC_060929.1 JAKCWS010000045.1 97.73 True local misassembly 49456085 49462738 134581 127924 NC_060929.1 JAKCWS010000045.1 97.6 True local misassembly 49457307 49461518 138792 134582 NC_060929.1 JAKCWS010000045.1 97.66 True local misassembly 49456085 49462738 145453 138793 NC_060929.1 JAKCWS010000045.1 97.75 True local misassembly 49457307 49461518 149667 145454 NC_060929.1 JAKCWS010000045.1 97.87 True local misassembly 49456085 49462738 156321 149668 NC_060929.1 JAKCWS010000045.1 97.79 True local misassembly 49457307 49461518 160531 156322 NC_060929.1 JAKCWS010000045.1 97.79 True local misassembly 49457307 49462738 165959 160532 NC_060929.1 JAKCWS010000045.1 97.75 True local misassembly 49456085 49462738 172617 165960 NC_060929.1 JAKCWS010000045.1 97.81 True local misassembly 49456085 49462107 179072 173046 NC_060929.1 JAKCWS010000045.1 97.98 True local misassembly 49458431 49460161 180803 179073 NC_060929.1 JAKCWS010000045.1 98.06 True local misassembly 49456855 49462444 186796 181203 NC_060929.1 JAKCWS010000045.1 97.73 True relocation, inconsistency = 7131 49448346 49449532 188174 186988 NC_060929.1 JAKCWS010000045.1 98.82 True relocation, inconsistency = 10191 49437032 49437982 189297 188347 NC_060929.1 JAKCWS010000045.1 98.74 True indel: stretch of mismatches 49436248 49436975 190081 189354 NC_060929.1 JAKCWS010000045.1 96.84 True relocation, inconsistency = -24455 49457307 49460701 193479 190083 NC_060929.1 JAKCWS010000045.1 97.88 True local misassembly 49456085 49462738 200133 193480 NC_060929.1 JAKCWS010000045.1 97.67 True relocation, inconsistency = -8150 49460025 49462738 204343 201630 NC_060929.1 JAKCWS010000045.1 97.73 True local misassembly 49456085 49462738 210997 204344 NC_060929.1 JAKCWS010000045.1 97.73 True local misassembly 49456085 49462107 217452 211426 NC_060929.1 JAKCWS010000045.1 97.99 True local misassembly 49458431 49460161 219183 217453 NC_060929.1 JAKCWS010000045.1 98.06 True local misassembly 49448346 49454001 225195 219536 NC_060929.1 JAKCWS010000045.1 97.84 True local misassembly 49448346 49449532 226554 225368 NC_060929.1 JAKCWS010000045.1 98.82 True relocation, inconsistency = 10191 49437032 49437982 227677 226727 NC_060929.1 JAKCWS010000045.1 98.74 True indel: stretch of mismatches 49436248 49436975 228461 227734 NC_060929.1 JAKCWS010000045.1 96.84 True relocation, inconsistency = -24455 49457303 49460701 231859 228463 NC_060929.1 JAKCWS010000045.1 97.77 True local misassembly 49460025 49462734 234573 231860 NC_060929.1 JAKCWS010000045.1 97.9 True local misassembly 49456085 49462738 241231 234574 NC_060929.1 JAKCWS010000045.1 97.9 True local misassembly 49451550 49453028 242712 241232 NC_060929.1 JAKCWS010000045.1 98.02 True local misassembly 49448225 49454263 248755 242713 NC_060929.1 JAKCWS010000045.1 97.9 True relocation, inconsistency = 29553 49413918 49416321 253511 251106 NC_060929.1 JAKCWS010000045.1 97.71 True relocation, inconsistency = 2130584 47281118 47281867 255727 254978 NC_060929.1 JAKCWS010000045.1 98.4 True relocation, inconsistency = -2145526 49423176 49426500 259197 255871 NC_060929.1 JAKCWS010000045.1 97.48 True fake: not a misassembly (possible transposable element) 49364734 49365697 261253 260290 NC_060929.1 JAKCWS010000045.1 97.82 True fake: not a misassembly (possible transposable element) 49415124 49417261 265547 263408 NC_060929.1 JAKCWS010000045.1 97.52 True relocation, inconsistency = -30571 49442450 49443775 268793 267467 NC_060929.1 JAKCWS010000045.1 97.29 True local misassembly 49439122 49440088 272124 271158 NC_060929.1 JAKCWS010000045.1 98.04 True CONTIG JAKCWS010000045.1 272178 misassembled 49458666 49462252 3619 29 NC_060929.1 JAKCWS010000046.1 98.19 True local misassembly 49456085 49462738 10277 3620 NC_060929.1 JAKCWS010000046.1 97.97 True relocation, inconsistency = 19361 49431919 49436587 15083 10414 NC_060929.1 JAKCWS010000046.1 98.07 True local misassembly 49435389 49436095 16368 15662 NC_060929.1 JAKCWS010000046.1 98.3 True indel: indel (<= 5bp) 49434812 49435388 16947 16371 NC_060929.1 JAKCWS010000046.1 99.13 True local misassembly 49433886 49434471 17533 16948 NC_060929.1 JAKCWS010000046.1 98.21 True relocation, inconsistency = -20378 49447522 49454263 24278 17534 NC_060929.1 JAKCWS010000046.1 97.44 True relocation, inconsistency = 2130901 47314406 47315641 26493 25258 NC_060929.1 JAKCWS010000046.1 98.38 True relocation, inconsistency = -2147883 49457307 49461543 31477 27239 NC_060929.1 JAKCWS010000046.1 97.89 True local misassembly 49456085 49462738 38135 31478 NC_060929.1 JAKCWS010000046.1 97.91 True local misassembly 49457307 49460161 40990 38136 NC_060929.1 JAKCWS010000046.1 97.93 True local misassembly 49456085 49462738 47648 40991 NC_060929.1 JAKCWS010000046.1 97.9 True local misassembly 49457307 49460161 50503 47649 NC_060929.1 JAKCWS010000046.1 97.88 True local misassembly 49456085 49462738 57161 50504 NC_060929.1 JAKCWS010000046.1 97.96 True local misassembly 49458666 49461518 60016 57162 NC_060929.1 JAKCWS010000046.1 97.98 True local misassembly 49456085 49462738 66674 60017 NC_060929.1 JAKCWS010000046.1 97.9 True local misassembly 49460184 49461518 68009 66675 NC_060929.1 JAKCWS010000046.1 98.16 True indel: indel (<= 5bp) 49458726 49460183 69469 68012 NC_060929.1 JAKCWS010000046.1 98.56 True local misassembly 49461541 49462456 70387 69472 NC_060929.1 JAKCWS010000046.1 98.14 True indel: indel (<= 5bp) 49460184 49461540 71746 70390 NC_060929.1 JAKCWS010000046.1 98.53 True indel: indel (<= 5bp) 49458726 49460183 73206 71749 NC_060929.1 JAKCWS010000046.1 98.56 True local misassembly 49456085 49462456 79584 73209 NC_060929.1 JAKCWS010000046.1 98.02 True local misassembly 49456085 49462107 86039 80013 NC_060929.1 JAKCWS010000046.1 97.76 True local misassembly 49458666 49461518 88894 86040 NC_060929.1 JAKCWS010000046.1 98.08 True local misassembly 49456317 49462738 95320 88895 NC_060929.1 JAKCWS010000046.1 97.93 True local misassembly 49456085 49460731 99969 95321 NC_060929.1 JAKCWS010000046.1 97.98 True relocation, inconsistency = 14606 49436318 49441356 105132 100092 NC_060929.1 JAKCWS010000046.1 98.0 True indel: indel (<= 5bp) 49435389 49436095 106060 105354 NC_060929.1 JAKCWS010000046.1 98.3 True local misassembly 49422044 49430179 114648 106513 NC_060929.1 JAKCWS010000046.1 97.13 True relocation, inconsistency = -40422 49458666 49461543 118450 115571 NC_060929.1 JAKCWS010000046.1 97.88 True local misassembly 49456085 49462738 125108 118451 NC_060929.1 JAKCWS010000046.1 97.9 True local misassembly 49457307 49461518 129322 125109 NC_060929.1 JAKCWS010000046.1 97.88 True local misassembly 49456085 49462738 135980 129323 NC_060929.1 JAKCWS010000046.1 97.87 True local misassembly 49460025 49461518 137476 135981 NC_060929.1 JAKCWS010000046.1 97.88 True local misassembly 49456085 49462738 144134 137477 NC_060929.1 JAKCWS010000046.1 97.99 True local misassembly 49457307 49461518 148348 144135 NC_060929.1 JAKCWS010000046.1 97.99 True local misassembly 49454315 49462738 156776 148349 NC_060929.1 JAKCWS010000046.1 97.89 True relocation, inconsistency = 94772 49358902 49359542 157417 156777 NC_060929.1 JAKCWS010000046.1 98.57 True relocation, inconsistency = -102244 49460184 49461145 158379 157418 NC_060929.1 JAKCWS010000046.1 98.34 True indel: indel (<= 5bp) 49458726 49460183 159839 158382 NC_060929.1 JAKCWS010000046.1 98.7 True local misassembly 49457072 49458374 161153 159851 NC_060929.1 JAKCWS010000046.1 97.7 True indel: stretch of mismatches 49455998 49457015 162227 161210 NC_060929.1 JAKCWS010000046.1 97.45 True local misassembly 49460184 49461091 163135 162228 NC_060929.1 JAKCWS010000046.1 98.34 True indel: indel (<= 5bp) 49458770 49460183 164551 163138 NC_060929.1 JAKCWS010000046.1 98.7 True local misassembly 49447329 49452655 169881 164552 NC_060929.1 JAKCWS010000046.1 97.94 True local misassembly 49442573 49446776 174975 170771 NC_060929.1 JAKCWS010000046.1 97.79 True relocation, inconsistency = -19020 49460040 49461543 176526 175025 NC_060929.1 JAKCWS010000046.1 98.0 True local misassembly 49447389 49454263 183406 176527 NC_060929.1 JAKCWS010000046.1 97.85 True relocation, inconsistency = 11888 49433636 49435378 185271 183529 NC_060929.1 JAKCWS010000046.1 98.51 True local misassembly 49435716 49436975 186587 185328 NC_060929.1 JAKCWS010000046.1 96.03 True local misassembly 49433636 49435378 188330 186588 NC_060929.1 JAKCWS010000046.1 98.57 True relocation, inconsistency = -28868 49461541 49462503 189293 188331 NC_060929.1 JAKCWS010000046.1 97.91 True indel: indel (<= 5bp) 49460184 49461540 190652 189296 NC_060929.1 JAKCWS010000046.1 98.31 True indel: indel (<= 5bp) 49458726 49460183 192112 190655 NC_060929.1 JAKCWS010000046.1 98.63 True local misassembly 49458431 49459744 193426 192113 NC_060929.1 JAKCWS010000046.1 98.16 True indel: stretch of mismatches 49457072 49458374 194785 193483 NC_060929.1 JAKCWS010000046.1 98.0 True indel: stretch of mismatches 49455998 49457015 195859 194842 NC_060929.1 JAKCWS010000046.1 97.54 True indel: indel (<= 5bp) 49455442 49455997 196416 195861 NC_060929.1 JAKCWS010000046.1 96.22 True relocation, inconsistency = -8150 49461541 49463425 198467 196583 NC_060929.1 JAKCWS010000046.1 97.88 True indel: indel (<= 5bp) 49460184 49461540 199826 198470 NC_060929.1 JAKCWS010000046.1 98.31 True indel: indel (<= 5bp) 49458431 49460183 201581 199829 NC_060929.1 JAKCWS010000046.1 98.23 True local misassembly 49456085 49462107 207662 201638 NC_060929.1 JAKCWS010000046.1 97.81 True local misassembly 49449941 49451671 209393 207663 NC_060929.1 JAKCWS010000046.1 98.0 True indel: stretch of mismatches 49448186 49449884 211148 209450 NC_060929.1 JAKCWS010000046.1 98.08 True relocation, inconsistency = -14262 49460025 49462447 213575 211149 NC_060929.1 JAKCWS010000046.1 97.86 True local misassembly 49456085 49462738 220229 213576 NC_060929.1 JAKCWS010000046.1 97.67 True relocation, inconsistency = 15963 49438391 49440121 221960 220230 NC_060929.1 JAKCWS010000046.1 98.0 True indel: stretch of mismatches 49437032 49438334 223319 222017 NC_060929.1 JAKCWS010000046.1 98.23 True local misassembly 49440144 49440710 223942 223376 NC_060929.1 JAKCWS010000046.1 98.77 True indel: indel (<= 5bp) 49438391 49440143 225697 223945 NC_060929.1 JAKCWS010000046.1 98.0 True local misassembly 49433636 49434994 227056 225698 NC_060929.1 JAKCWS010000046.1 98.12 True local misassembly 49435389 49436303 228359 227445 NC_060929.1 JAKCWS010000046.1 98.03 True indel: indel (<= 5bp) 49434049 49435388 229701 228362 NC_060929.1 JAKCWS010000046.1 98.58 True translocation 58370490 58386241 245454 229703 NC_060930.1 JAKCWS010000046.1 98.58 True CONTIG JAKCWS010000046.1 245454 misassembled 49457307 49462252 5035 86 NC_060929.1 JAKCWS010000047.1 98.02 True local misassembly 49456085 49462738 11693 5036 NC_060929.1 JAKCWS010000047.1 97.78 True local misassembly 49458666 49460161 13189 11694 NC_060929.1 JAKCWS010000047.1 97.82 True local misassembly 49456085 49462738 19847 13190 NC_060929.1 JAKCWS010000047.1 97.84 True local misassembly 49457307 49461518 24061 19848 NC_060929.1 JAKCWS010000047.1 97.78 True local misassembly 49456085 49462738 30719 24062 NC_060929.1 JAKCWS010000047.1 97.78 True local misassembly 49457307 49461518 34933 30720 NC_060929.1 JAKCWS010000047.1 97.82 True local misassembly 49456085 49462738 41587 34934 NC_060929.1 JAKCWS010000047.1 97.82 True local misassembly 49457307 49461518 45792 41588 NC_060929.1 JAKCWS010000047.1 97.63 True local misassembly 49456085 49462738 52446 45793 NC_060929.1 JAKCWS010000047.1 97.73 True local misassembly 49457307 49462107 57679 52875 NC_060929.1 JAKCWS010000047.1 98.01 True local misassembly 49456085 49462738 64337 57680 NC_060929.1 JAKCWS010000047.1 97.78 True local misassembly 49456855 49461518 69003 64338 NC_060929.1 JAKCWS010000047.1 97.74 True relocation, inconsistency = 16982 49438174 49439871 70702 69005 NC_060929.1 JAKCWS010000047.1 98.06 True indel: stretch of mismatches 49437032 49437982 71844 70894 NC_060929.1 JAKCWS010000047.1 98.95 True indel: stretch of mismatches 49436296 49436975 72580 71901 NC_060929.1 JAKCWS010000047.1 96.84 True relocation, inconsistency = -25812 49457307 49462107 77385 72581 NC_060929.1 JAKCWS010000047.1 97.88 True local misassembly 49456089 49462738 84035 77386 NC_060929.1 JAKCWS010000047.1 97.72 True fake: not a misassembly (possible transposable element) 47168164 47168766 84768 84166 NC_060929.1 JAKCWS010000047.1 96.68 True fake: not a misassembly (possible transposable element) 49443781 49447506 89892 86167 NC_060929.1 JAKCWS010000047.1 98.01 True relocation, inconsistency = -23097 49463911 49466174 92859 90596 NC_060929.1 JAKCWS010000047.1 97.7 True local misassembly 49459162 49460750 94891 93303 NC_060929.1 JAKCWS010000047.1 97.86 True fake: not a misassembly (possible transposable element) 49415111 49416261 102932 101781 NC_060929.1 JAKCWS010000047.1 97.05 True fake: not a misassembly (possible transposable element) 49442450 49443775 109225 107899 NC_060929.1 JAKCWS010000047.1 97.36 True fake: not a misassembly (possible transposable element) 49325035 49326233 111144 109945 NC_060929.1 JAKCWS010000047.1 96.92 True fake: not a misassembly (possible transposable element) 49439053 49440088 112625 111590 NC_060929.1 JAKCWS010000047.1 97.68 True local misassembly 49435042 49438682 121394 117752 NC_060929.1 JAKCWS010000047.1 97.48 True relocation, inconsistency = -17662 49450672 49452260 123428 121838 NC_060929.1 JAKCWS010000047.1 98.05 True local misassembly 49447394 49449307 126701 124788 NC_060929.1 JAKCWS010000047.1 97.7 True relocation, inconsistency = 28533 49415111 49416261 130452 129301 NC_060929.1 JAKCWS010000047.1 97.05 True relocation, inconsistency = -94446 49504767 49505747 135242 134262 NC_060929.1 JAKCWS010000047.1 98.27 True indel: stretch of mismatches 49503265 49504590 136745 135419 NC_060929.1 JAKCWS010000047.1 97.21 True relocation, inconsistency = 149813 49351534 49352732 138664 137465 NC_060929.1 JAKCWS010000047.1 97.0 True relocation, inconsistency = -89000 49439053 49440088 140145 139110 NC_060929.1 JAKCWS010000047.1 97.88 True local misassembly 49428522 49429557 151358 150323 NC_060929.1 JAKCWS010000047.1 97.88 True relocation, inconsistency = 2134654 47281118 47281867 164106 163359 NC_060929.1 JAKCWS010000047.1 98.53 True relocation, inconsistency = -2155041 49433931 49434938 166334 165327 NC_060929.1 JAKCWS010000047.1 97.52 True relocation, inconsistency = 1991902 47435901 47439014 172462 169349 NC_060929.1 JAKCWS010000047.1 98.04 True relocation, inconsistency = -1975259 49406167 49411159 177456 172463 NC_060929.1 JAKCWS010000047.1 97.68 True relocation, inconsistency = -45180 49449244 49450903 179559 177900 NC_060929.1 JAKCWS010000047.1 97.89 True local misassembly 49445847 49448605 182956 180197 NC_060929.1 JAKCWS010000047.1 97.64 True relocation, inconsistency = 113124 49326952 49328460 188727 187219 NC_060929.1 JAKCWS010000047.1 97.75 True relocation, inconsistency = -131796 49455478 49456114 191998 191361 NC_060929.1 JAKCWS010000047.1 97.96 True relocation, inconsistency = 13923 49435042 49438340 198513 195213 NC_060929.1 JAKCWS010000047.1 97.73 True local misassembly 49427163 49428822 200616 198957 NC_060929.1 JAKCWS010000047.1 97.83 True local misassembly 49423766 49426500 204013 201277 NC_060929.1 JAKCWS010000047.1 97.3 True relocation, inconsistency = 81524 49339863 49341371 206392 204884 NC_060929.1 JAKCWS010000047.1 98.21 True relocation, inconsistency = -55708 49394963 49395570 206994 206393 NC_060929.1 JAKCWS010000047.1 97.47 True relocation, inconsistency = -63184 49455357 49455997 209784 209144 NC_060929.1 JAKCWS010000047.1 97.5 True local misassembly 49453317 49454693 211484 210108 NC_060929.1 JAKCWS010000047.1 97.17 True local misassembly 49455478 49456114 214755 214118 NC_060929.1 JAKCWS010000047.1 97.96 True relocation, inconsistency = 139275 49314501 49315842 216458 215116 NC_060929.1 JAKCWS010000047.1 98.66 True local misassembly 49311326 49313768 219635 217192 NC_060929.1 JAKCWS010000047.1 98.53 True local misassembly 49308947 49309587 222014 221374 NC_060929.1 JAKCWS010000047.1 97.97 True relocation, inconsistency = -149801 49455478 49456114 225285 224648 NC_060929.1 JAKCWS010000047.1 97.96 True relocation, inconsistency = 112776 49341000 49342341 226988 225646 NC_060929.1 JAKCWS010000047.1 98.59 True local misassembly 49337919 49340267 230071 227722 NC_060929.1 JAKCWS010000047.1 98.47 True relocation, inconsistency = 967883 48368663 48369702 231445 230405 NC_060929.1 JAKCWS010000047.1 98.37 True CONTIG JAKCWS010000047.1 231445 misassembled 49457307 49461633 4355 25 NC_060929.1 JAKCWS010000048.1 97.91 True local misassembly 49456085 49462738 11012 4356 NC_060929.1 JAKCWS010000048.1 97.75 True local misassembly 49456614 49460161 14560 11013 NC_060929.1 JAKCWS010000048.1 97.7 True local misassembly 49457307 49461706 18964 14561 NC_060929.1 JAKCWS010000048.1 97.89 True local misassembly 49456085 49462738 25622 18965 NC_060929.1 JAKCWS010000048.1 97.75 True local misassembly 49456375 49461518 30768 25623 NC_060929.1 JAKCWS010000048.1 97.79 True local misassembly 49458666 49460789 32894 30769 NC_060929.1 JAKCWS010000048.1 97.8 True local misassembly 49456085 49462738 39552 32895 NC_060929.1 JAKCWS010000048.1 97.82 True local misassembly 49457307 49462107 44785 39981 NC_060929.1 JAKCWS010000048.1 97.76 True local misassembly 49456085 49462738 51443 44786 NC_060929.1 JAKCWS010000048.1 97.79 True local misassembly 49457307 49461518 55657 51444 NC_060929.1 JAKCWS010000048.1 97.78 True local misassembly 49456085 49462738 62315 55658 NC_060929.1 JAKCWS010000048.1 97.81 True local misassembly 49457307 49461518 66529 62316 NC_060929.1 JAKCWS010000048.1 97.76 True local misassembly 49456085 49462738 73187 66530 NC_060929.1 JAKCWS010000048.1 97.76 True local misassembly 49457307 49461518 77401 73188 NC_060929.1 JAKCWS010000048.1 97.75 True local misassembly 49456085 49462738 84059 77402 NC_060929.1 JAKCWS010000048.1 97.84 True local misassembly 49457307 49461518 88273 84060 NC_060929.1 JAKCWS010000048.1 97.82 True local misassembly 49456085 49462738 94931 88274 NC_060929.1 JAKCWS010000048.1 97.78 True local misassembly 49457307 49461518 99145 94932 NC_060929.1 JAKCWS010000048.1 97.82 True local misassembly 49456085 49462738 105803 99146 NC_060929.1 JAKCWS010000048.1 97.76 True local misassembly 49457307 49461518 110017 105804 NC_060929.1 JAKCWS010000048.1 97.84 True local misassembly 49456085 49462738 116671 110018 NC_060929.1 JAKCWS010000048.1 97.85 True local misassembly 49457307 49461518 120876 116672 NC_060929.1 JAKCWS010000048.1 97.67 True local misassembly 49456085 49462738 127530 120877 NC_060929.1 JAKCWS010000048.1 97.73 True local misassembly 49457307 49462107 132763 127959 NC_060929.1 JAKCWS010000048.1 98.01 True local misassembly 49456085 49462738 139421 132764 NC_060929.1 JAKCWS010000048.1 97.76 True local misassembly 49456855 49461518 144087 139422 NC_060929.1 JAKCWS010000048.1 97.74 True relocation, inconsistency = 18681 49436796 49437982 145465 144279 NC_060929.1 JAKCWS010000048.1 98.82 True relocation, inconsistency = -26152 49456085 49462447 152328 145966 NC_060929.1 JAKCWS010000048.1 97.64 True relocation, inconsistency = 7811 49443469 49448217 157134 152385 NC_060929.1 JAKCWS010000048.1 97.79 True fake: not a misassembly (possible transposable element) 49497894 49502597 164206 159501 NC_060929.1 JAKCWS010000048.1 97.66 True fake: not a misassembly (possible transposable element) 49433005 49434598 166243 164650 NC_060929.1 JAKCWS010000048.1 97.62 True local misassembly 49421918 49424054 170528 168392 NC_060929.1 JAKCWS010000048.1 97.52 True local misassembly 49415111 49416261 174281 173130 NC_060929.1 JAKCWS010000048.1 97.05 True relocation, inconsistency = 16979 49389191 49390099 183222 182314 NC_060929.1 JAKCWS010000048.1 97.58 True relocation, inconsistency = -54010 49435042 49438682 191383 187741 NC_060929.1 JAKCWS010000048.1 97.59 True indel: stretch of mismatches 49433005 49434598 193419 191827 NC_060929.1 JAKCWS010000048.1 97.55 True local misassembly 49433419 49434598 196734 195556 NC_060929.1 JAKCWS010000048.1 97.54 True relocation, inconsistency = 41781 49388262 49390666 200111 197706 NC_060929.1 JAKCWS010000048.1 97.3 True relocation, inconsistency = -99193 49485934 49487260 201632 200306 NC_060929.1 JAKCWS010000048.1 97.06 True local misassembly 49477938 49479099 203513 202352 NC_060929.1 JAKCWS010000048.1 97.33 True relocation, inconsistency = -80542 49557277 49558479 204716 203514 NC_060929.1 JAKCWS010000048.1 98.25 True relocation, inconsistency = 202830 49352916 49354042 206247 205121 NC_060929.1 JAKCWS010000048.1 98.14 True indel: indel (<= 5bp) 49352054 49352738 207108 206424 NC_060929.1 JAKCWS010000048.1 97.52 True indel: indel (<= 5bp) 49351413 49352053 207750 207110 NC_060929.1 JAKCWS010000048.1 96.26 True local misassembly 49351534 49352732 209669 208470 NC_060929.1 JAKCWS010000048.1 97.0 True indel: indel (<= 5bp) 49350055 49351042 211150 210162 NC_060929.1 JAKCWS010000048.1 97.78 True CONTIG JAKCWS010000048.1 218512 misassembled 66107287 66206460 104642 5685 NC_060944.1 CM039039.1 98.3 True translocation 2876 1768748 104643 1869133 NC_060930.1 CM039039.1 99.34 True local misassembly 1768932 2248602 1869184 2349146 NC_060930.1 CM039039.1 99.84 True local misassembly 2249559 2786161 2349147 2885623 NC_060930.1 CM039039.1 99.72 True local misassembly 2788773 3503968 2885624 3601081 NC_060930.1 CM039039.1 99.56 True local misassembly 3504125 4904549 3601416 5002563 NC_060930.1 CM039039.1 99.74 True local misassembly 4904783 5704897 5002908 5801093 NC_060930.1 CM039039.1 99.64 True local misassembly 5705181 6801942 5801657 6899173 NC_060930.1 CM039039.1 99.57 True indel: indel (> 5bp) 6802009 7311437 6899248 7409069 NC_060930.1 CM039039.1 99.64 True indel: indel (<= 5bp) 7311813 8123163 7409442 8219997 NC_060930.1 CM039039.1 99.68 True local misassembly 8123707 9154600 8220779 9252676 NC_060930.1 CM039039.1 99.64 True indel: indel (<= 5bp) 9154682 9915629 9252760 10014057 NC_060930.1 CM039039.1 99.75 True indel: stretch of mismatches 9915653 12035869 10014081 12135468 NC_060930.1 CM039039.1 99.71 True indel: indel (> 5bp) 12036366 13282401 12135906 13382004 NC_060930.1 CM039039.1 99.85 True indel: stretch of mismatches 13282402 13376312 13382005 13475670 NC_060930.1 CM039039.1 99.41 True fake: not a misassembly (possible transposable element) 80149648 80153406 13476102 13479867 NC_060930.1 CM039039.1 96.66 True fake: not a misassembly (possible transposable element) 13376299 15539664 13481714 15647122 NC_060930.1 CM039039.1 99.68 True local misassembly 15539829 16822232 15648192 16932094 NC_060930.1 CM039039.1 99.68 True fake: not a misassembly (possible transposable element) 65655564 65656234 16932828 16932159 NC_060925.1 CM039039.1 99.55 True fake: not a misassembly (possible transposable element) 16822374 18199727 16932847 18309941 NC_060930.1 CM039039.1 99.78 True local misassembly 18199761 18719555 18310399 18830584 NC_060930.1 CM039039.1 99.57 True indel: indel (> 5bp) 18719717 22952673 18830738 23056405 NC_060930.1 CM039039.1 99.55 True indel: indel (> 5bp) 22952709 23492952 23056432 23596743 NC_060930.1 CM039039.1 99.85 True local misassembly 23493370 23497221 23597045 23600995 NC_060930.1 CM039039.1 95.95 True indel: indel (> 5bp) 23497398 23705428 23601143 23811404 NC_060930.1 CM039039.1 97.9 True indel: indel (> 5bp) 23705504 24110037 23811460 24215734 NC_060930.1 CM039039.1 99.53 True local misassembly 24110520 24935706 24216361 25044363 NC_060930.1 CM039039.1 99.51 True local misassembly 24936204 26594949 25044936 26706292 NC_060930.1 CM039039.1 99.6 True indel: indel (<= 5bp) 26595082 26616645 26706426 26728006 NC_060930.1 CM039039.1 99.54 True relocation, inconsistency = 21957 26638603 26643340 26728007 26732765 NC_060930.1 CM039039.1 99.4 True indel: indel (<= 5bp) 26643473 28584564 26732899 28672451 NC_060930.1 CM039039.1 99.62 True local misassembly 28586842 30335661 28673655 30422094 NC_060930.1 CM039039.1 99.54 True local misassembly 30335860 30851237 30424712 30940307 NC_060930.1 CM039039.1 99.75 True local misassembly 30851547 31283343 30940842 31372618 NC_060930.1 CM039039.1 98.96 True local misassembly 31285936 32262974 31380871 32358250 NC_060930.1 CM039039.1 99.86 True local misassembly 32263800 32335909 32358279 32430381 NC_060930.1 CM039039.1 99.31 True relocation, inconsistency = -11503 32359612 32360790 32465587 32466759 NC_060930.1 CM039039.1 96.01 True local misassembly 32376022 32376602 32476053 32476633 NC_060930.1 CM039039.1 97.42 True indel: indel (<= 5bp) 32376643 32384847 32476675 32484834 NC_060930.1 CM039039.1 95.68 True relocation, inconsistency = 26141 32413153 32413691 32486999 32487537 NC_060930.1 CM039039.1 95.18 True translocation 241586023 241586555 32493560 32493028 NC_060925.1 CM039039.1 97.19 True translocation 141830931 141832039 32509114 32508006 NC_060947.1 CM039039.1 95.77 True translocation 42906495 42907479 32527319 32528301 NC_060942.1 CM039039.1 96.55 True translocation 23354707 23358114 32539522 32542931 NC_060927.1 CM039039.1 95.46 True translocation 82508498 82509199 32544103 32544803 NC_060933.1 CM039039.1 96.01 True translocation 178914206 178915048 32564298 32563457 NC_060926.1 CM039039.1 98.46 True translocation 78096255 78097235 32615467 32616447 NC_060929.1 CM039039.1 95.62 True translocation 32413257 32414172 32616691 32617606 NC_060930.1 CM039039.1 96.62 True local misassembly 32427486 32449017 32632505 32653986 NC_060930.1 CM039039.1 97.59 True indel: indel (<= 5bp) 32449115 32454750 32654080 32659707 NC_060930.1 CM039039.1 95.61 True local misassembly 32461050 32461767 32666222 32666935 NC_060930.1 CM039039.1 97.08 True local misassembly 32463293 32464745 32668443 32669905 NC_060930.1 CM039039.1 95.22 True fake: not a misassembly (possible transposable element) 90897553 90898808 32681342 32680087 NC_060934.1 CM039039.1 96.02 True fake: not a misassembly (possible transposable element) 32475248 32476389 32681687 32682841 NC_060930.1 CM039039.1 95.68 True indel: indel (<= 5bp) 32476462 32487315 32682915 32693652 NC_060930.1 CM039039.1 96.28 True local misassembly 32492599 32493458 32699933 32700792 NC_060930.1 CM039039.1 96.63 True local misassembly 32494718 32495384 32705102 32705764 NC_060930.1 CM039039.1 95.5 True translocation 55782191 55783151 32707131 32706176 NC_060943.1 CM039039.1 96.05 True translocation 4968066 4969033 32712447 32711479 NC_060941.1 CM039039.1 98.76 True translocation 32495695 32496374 32712686 32713365 NC_060930.1 CM039039.1 96.03 True indel: indel (<= 5bp) 32496681 32498274 32713676 32715269 NC_060930.1 CM039039.1 96.61 True local misassembly 32501283 32503168 32718264 32720144 NC_060930.1 CM039039.1 95.29 True local misassembly 32510529 32526645 32720814 32736934 NC_060930.1 CM039039.1 98.06 True indel: indel (> 5bp) 32526861 32538938 32737143 32749211 NC_060930.1 CM039039.1 97.01 True indel: indel (<= 5bp) 32538969 32540881 32749239 32751151 NC_060930.1 CM039039.1 98.43 True indel: indel (<= 5bp) 32540886 32541484 32751152 32751750 NC_060930.1 CM039039.1 96.49 True local misassembly 32542079 32542596 32752055 32752572 NC_060930.1 CM039039.1 98.07 True local misassembly 32544751 32545382 32754374 32755005 NC_060930.1 CM039039.1 95.89 True local misassembly 32546551 32633313 32756170 32843253 NC_060930.1 CM039039.1 98.27 True local misassembly 32633398 34556106 32844403 34766201 NC_060930.1 CM039039.1 99.71 True local misassembly 34556164 36836433 34767398 37045360 NC_060930.1 CM039039.1 99.73 True indel: indel (> 5bp) 36836529 38698598 37045476 38906731 NC_060930.1 CM039039.1 99.78 True indel: indel (> 5bp) 38698801 39753319 38906949 39962044 NC_060930.1 CM039039.1 99.81 True indel: indel (> 5bp) 39753746 43794209 39962454 44003159 NC_060930.1 CM039039.1 99.76 True local misassembly 43795455 44014986 44003272 44222807 NC_060930.1 CM039039.1 99.77 True indel: indel (> 5bp) 44015077 48674424 44222963 48879893 NC_060930.1 CM039039.1 99.78 True local misassembly 48674701 51178022 48880392 51383110 NC_060930.1 CM039039.1 99.82 True local misassembly 51178673 51717837 51383111 51921281 NC_060930.1 CM039039.1 99.71 True fake: not a misassembly (possible transposable element) 118865588 118871601 51921293 51927304 NC_060925.1 CM039039.1 99.62 True fake: not a misassembly (possible transposable element) 51717839 53903837 51927320 54113926 NC_060930.1 CM039039.1 99.82 True local misassembly 53909980 54091440 54114075 54295565 NC_060930.1 CM039039.1 99.78 True local misassembly 54091645 55467170 54295999 55665846 NC_060930.1 CM039039.1 99.36 True local misassembly 55467747 55937942 55667371 56137628 NC_060930.1 CM039039.1 99.89 True local misassembly 55939145 56165925 56138840 56365752 NC_060930.1 CM039039.1 99.62 True local misassembly 56166749 58379906 56365753 58580376 NC_060930.1 CM039039.1 99.59 True relocation, inconsistency = -64191 58315716 58423013 58580377 58685065 NC_060930.1 CM039039.1 95.6 True relocation, inconsistency = -48055 58375166 58380433 58685273 58690541 NC_060930.1 CM039039.1 98.44 True relocation, inconsistency = -38905 58341529 58371308 58690542 58720042 NC_060930.1 CM039039.1 96.75 True relocation, inconsistency = -32794 58338518 58380992 58720046 58762239 NC_060930.1 CM039039.1 97.12 True relocation, inconsistency = 157109 58538102 58545686 58762240 58769824 NC_060930.1 CM039039.1 98.65 True relocation, inconsistency = -161529 58384164 58420725 58769831 58806398 NC_060930.1 CM039039.1 98.45 True relocation, inconsistency = -131446 58289280 58399332 58806399 58916444 NC_060930.1 CM039039.1 98.14 True relocation, inconsistency = -110053 58289280 58426071 58916445 59053240 NC_060930.1 CM039039.1 98.23 True relocation, inconsistency = -137051 58289686 58389407 59053906 59153115 NC_060930.1 CM039039.1 97.55 True relocation, inconsistency = -63701 58326360 58424884 59153769 59252288 NC_060930.1 CM039039.1 98.33 True fake: scaffold gap size wrong estimation (local) 58427362 58448125 59255037 59276143 NC_060930.1 CM039039.1 97.33 True relocation, inconsistency = -153187 58294939 58295799 59276144 59277004 NC_060930.1 CM039039.1 98.21 True local misassembly 58301404 58386242 59277005 59361836 NC_060930.1 CM039039.1 98.14 True relocation, inconsistency = -75077 58311166 58387253 59361837 59438214 NC_060930.1 CM039039.1 97.55 True relocation, inconsistency = -58307 58328947 58480093 59438215 59592385 NC_060930.1 CM039039.1 96.65 True relocation, inconsistency = -167131 58312963 58426071 59592386 59705493 NC_060930.1 CM039039.1 98.3 True relocation, inconsistency = -61641 58366612 58381535 59707675 59722596 NC_060930.1 CM039039.1 98.35 True relocation, inconsistency = -7300 58374236 58378449 59722597 59726810 NC_060930.1 CM039039.1 98.29 True relocation, inconsistency = -10359 58368091 58372335 59726811 59731053 NC_060930.1 CM039039.1 97.77 True local misassembly 58368091 58378478 59731054 59741439 NC_060930.1 CM039039.1 98.12 True relocation, inconsistency = -22591 58355888 58363160 59741440 59748710 NC_060930.1 CM039039.1 98.11 True local misassembly 58368091 58375392 59748711 59756010 NC_060930.1 CM039039.1 97.99 True relocation, inconsistency = -16475 58358918 58369293 59756011 59766384 NC_060930.1 CM039039.1 98.07 True local misassembly 58374224 58378449 59766385 59770610 NC_060930.1 CM039039.1 98.34 True local misassembly 58374207 58378449 59770611 59774853 NC_060930.1 CM039039.1 98.31 True local misassembly 58374207 58378478 59774854 59779125 NC_060930.1 CM039039.1 98.29 True local misassembly 58374236 58378449 59779126 59783339 NC_060930.1 CM039039.1 98.36 True local misassembly 58374207 58378449 59783340 59787582 NC_060930.1 CM039039.1 98.38 True relocation, inconsistency = -22591 58355859 58378478 59787583 59810196 NC_060930.1 CM039039.1 98.13 True relocation, inconsistency = -19532 58358947 58378478 59810197 59829723 NC_060930.1 CM039039.1 98.16 True local misassembly 58374236 58378449 59829724 59833937 NC_060930.1 CM039039.1 98.41 True relocation, inconsistency = -53171 58325279 58378449 59833938 59887105 NC_060930.1 CM039039.1 98.02 True relocation, inconsistency = -62338 58316112 58384591 59887106 59955560 NC_060930.1 CM039039.1 98.1 True relocation, inconsistency = -28704 58355888 58375409 59955561 59975070 NC_060930.1 CM039039.1 97.97 True relocation, inconsistency = -13418 58361992 58378478 59975071 59991550 NC_060930.1 CM039039.1 98.03 True relocation, inconsistency = -89337 58289585 58305073 59991994 60007477 NC_060930.1 CM039039.1 98.05 True relocation, inconsistency = 53844 58358918 58375409 60007478 60023961 NC_060930.1 CM039039.1 98.11 True relocation, inconsistency = -7302 58368108 58378449 60023962 60034301 NC_060930.1 CM039039.1 98.09 True relocation, inconsistency = -13416 58365034 58378478 60034302 60047743 NC_060930.1 CM039039.1 98.16 True local misassembly 58374236 58378449 60047744 60051957 NC_060930.1 CM039039.1 98.46 True local misassembly 58374207 58378478 60051958 60056229 NC_060930.1 CM039039.1 98.36 True local misassembly 58374236 58378449 60056230 60060443 NC_060930.1 CM039039.1 98.46 True local misassembly 58374207 58379815 60060444 60066052 NC_060930.1 CM039039.1 98.58 True relocation, inconsistency = -11550 58368266 58378449 60066053 60076234 NC_060930.1 CM039039.1 98.21 True relocation, inconsistency = -10359 58368091 58378467 60076235 60086609 NC_060930.1 CM039039.1 98.13 True relocation, inconsistency = -28707 58349762 58378478 60086611 60115319 NC_060930.1 CM039039.1 97.98 True relocation, inconsistency = -22591 58355888 58378478 60115320 60137904 NC_060930.1 CM039039.1 98.01 True relocation, inconsistency = -16475 58362004 58369293 60137905 60145192 NC_060930.1 CM039039.1 98.03 True relocation, inconsistency = -80672 58289280 58394400 60145851 60252330 NC_060930.1 CM039039.1 96.86 True relocation, inconsistency = -12224 58382177 58393730 60252331 60263887 NC_060930.1 CM039039.1 96.85 True relocation, inconsistency = -102069 58291662 58423782 60263888 60396006 NC_060930.1 CM039039.1 98.26 True relocation, inconsistency = -134503 58289280 58426071 60396007 60532803 NC_060930.1 CM039039.1 98.2 True local misassembly 58423015 58423679 60532804 60533468 NC_060930.1 CM039039.1 97.84 True relocation, inconsistency = 114322 58538002 58588807 60533469 60584273 NC_060930.1 CM039039.1 98.78 True relocation, inconsistency = -256986 58332476 58480093 60584928 60734077 NC_060930.1 CM039039.1 96.4 True relocation, inconsistency = -118212 58361882 58379294 60734078 60751486 NC_060930.1 CM039039.1 97.99 True local misassembly 58372728 58381535 60751544 60760351 NC_060930.1 CM039039.1 98.59 True relocation, inconsistency = -19532 58362004 58369276 60760352 60767622 NC_060930.1 CM039039.1 98.01 True relocation, inconsistency = -7302 58361975 58369293 60767623 60774939 NC_060930.1 CM039039.1 98.07 True local misassembly 58374224 58378449 60774940 60779165 NC_060930.1 CM039039.1 98.29 True local misassembly 58374207 58378478 60779166 60783437 NC_060930.1 CM039039.1 98.27 True local misassembly 58374236 58378478 60783438 60787680 NC_060930.1 CM039039.1 98.31 True fake: not a misassembly (possible transposable element) 58343658 58344814 60787681 60788837 NC_060930.1 CM039039.1 98.33 True fake: not a misassembly (possible transposable element) 58374207 58378478 60788838 60793109 NC_060930.1 CM039039.1 98.31 True local misassembly 58374236 58378449 60793110 60797323 NC_060930.1 CM039039.1 98.34 True relocation, inconsistency = -22591 58355859 58381535 60797324 60822994 NC_060930.1 CM039039.1 98.17 True relocation, inconsistency = -7640 58374207 58378478 60823306 60827577 NC_060930.1 CM039039.1 98.38 True local misassembly 58374236 58378449 60827578 60831791 NC_060930.1 CM039039.1 98.41 True relocation, inconsistency = -10359 58368091 58375409 60831792 60839108 NC_060930.1 CM039039.1 98.06 True local misassembly 58374224 58378449 60839109 60843334 NC_060930.1 CM039039.1 98.41 True local misassembly 58374207 58378478 60843335 60847606 NC_060930.1 CM039039.1 98.43 True local misassembly 58374236 58378449 60847607 60851820 NC_060930.1 CM039039.1 98.34 True local misassembly 58374207 58378478 60851821 60856092 NC_060930.1 CM039039.1 98.34 True relocation, inconsistency = -10359 58368120 58369276 60856093 60857250 NC_060930.1 CM039039.1 98.09 True fake: not a misassembly (possible transposable element) 58361975 58363160 60857251 60858436 NC_060930.1 CM039039.1 98.5 True fake: not a misassembly (possible transposable element) 58374207 58378478 60858437 60862708 NC_060930.1 CM039039.1 98.31 True local misassembly 58374236 58378449 60862709 60866922 NC_060930.1 CM039039.1 98.48 True local misassembly 58374207 58379838 60866923 60872554 NC_060930.1 CM039039.1 98.53 True local misassembly 58374405 58378449 60872555 60876599 NC_060930.1 CM039039.1 98.36 True local misassembly 58374207 58378449 60876600 60880841 NC_060930.1 CM039039.1 98.36 True local misassembly 58374207 58378478 60880842 60885113 NC_060930.1 CM039039.1 98.43 True local misassembly 58374236 58378449 60885114 60889326 NC_060930.1 CM039039.1 98.29 True relocation, inconsistency = -10359 58368091 58375377 60889327 60896611 NC_060930.1 CM039039.1 98.07 True local misassembly 58374213 58378449 60896633 60900869 NC_060930.1 CM039039.1 98.43 True local misassembly 58374207 58379838 60900870 60906501 NC_060930.1 CM039039.1 98.58 True local misassembly 58374405 58378449 60906502 60910546 NC_060930.1 CM039039.1 98.54 True local misassembly 58374207 58378466 60910547 60914806 NC_060930.1 CM039039.1 98.26 True relocation, inconsistency = -16475 58361993 58378449 60914808 60931260 NC_060930.1 CM039039.1 98.11 True relocation, inconsistency = -22591 58355859 58375409 60931261 60950804 NC_060930.1 CM039039.1 98.07 True local misassembly 58374224 58378478 60950805 60955059 NC_060930.1 CM039039.1 98.41 True relocation, inconsistency = -89845 58289280 58415153 60955706 61081566 NC_060930.1 CM039039.1 98.32 True relocation, inconsistency = -56207 58358947 58375392 61081567 61098002 NC_060930.1 CM039039.1 98.0 True relocation, inconsistency = -13418 58361975 58378478 61098003 61114499 NC_060930.1 CM039039.1 98.04 True relocation, inconsistency = -22083 58356839 58372335 61114943 61130426 NC_060930.1 CM039039.1 97.96 True relocation, inconsistency = -28707 58343629 58381535 61130427 61168321 NC_060930.1 CM039039.1 98.11 True relocation, inconsistency = -7300 58374236 58378449 61168322 61172535 NC_060930.1 CM039039.1 98.46 True local misassembly 58374207 58379838 61172536 61178167 NC_060930.1 CM039039.1 98.6 True relocation, inconsistency = 124671 58504824 58517754 61178482 61191412 NC_060930.1 CM039039.1 98.92 True relocation, inconsistency = -146576 58371179 58378467 61191413 61198701 NC_060930.1 CM039039.1 98.29 True relocation, inconsistency = -37880 58340589 58378478 61198703 61236582 NC_060930.1 CM039039.1 97.95 True relocation, inconsistency = -10359 58368120 58378449 61236583 61246910 NC_060930.1 CM039039.1 98.08 True relocation, inconsistency = -28707 58349743 58378478 61246911 61275634 NC_060930.1 CM039039.1 97.95 True relocation, inconsistency = -16475 58362004 58372335 61275635 61285959 NC_060930.1 CM039039.1 97.88 True relocation, inconsistency = 92566 58464902 58477804 61285960 61298859 NC_060930.1 CM039039.1 98.81 True relocation, inconsistency = -188525 58289280 58426071 61298860 61438715 NC_060930.1 CM039039.1 96.15 True relocation, inconsistency = -82536 58343536 58402388 61438716 61497566 NC_060930.1 CM039039.1 98.34 True relocation, inconsistency = -113109 58289280 58426071 61497567 61634363 NC_060930.1 CM039039.1 98.34 True relocation, inconsistency = 2631409 61057481 61067711 61634364 61644594 NC_060930.1 CM039039.1 98.97 True local misassembly 61067689 61090607 61645421 61668411 NC_060930.1 CM039039.1 98.78 True relocation, inconsistency = -9497 61094177 61102210 61681478 61689512 NC_060930.1 CM039039.1 99.3 True relocation, inconsistency = 17249 61120416 61137676 61690469 61707400 NC_060930.1 CM039039.1 97.49 True local misassembly 61139676 61144490 61714486 61719300 NC_060930.1 CM039039.1 99.5 True indel: indel (<= 5bp) 61144491 61145686 61719303 61720498 NC_060930.1 CM039039.1 99.5 True indel: indel (<= 5bp) 61145688 61148656 61720499 61723467 NC_060930.1 CM039039.1 99.29 True local misassembly 61148657 61149333 61723636 61724312 NC_060930.1 CM039039.1 99.56 True indel: indel (<= 5bp) 61149335 61150510 61724313 61725488 NC_060930.1 CM039039.1 99.23 True indel: indel (<= 5bp) 61150512 61151336 61725489 61726313 NC_060930.1 CM039039.1 99.88 True local misassembly 61152882 61246353 61728710 61822343 NC_060930.1 CM039039.1 99.16 True local misassembly 61247203 61323020 61822344 61898534 NC_060930.1 CM039039.1 99.02 True relocation, inconsistency = -9804 61323008 61342997 61908326 61929163 NC_060930.1 CM039039.1 95.53 True local misassembly 61356205 61371926 61942233 61957631 NC_060930.1 CM039039.1 97.39 True local misassembly 61371501 61381746 61958905 61969150 NC_060930.1 CM039039.1 99.69 True local misassembly 61381599 61383460 61973145 61975005 NC_060930.1 CM039039.1 98.82 True indel: indel (<= 5bp) 61383798 62518871 61975340 63110629 NC_060930.1 CM039039.1 99.77 True local misassembly 62514957 62582806 63110630 63179500 NC_060930.1 CM039039.1 98.26 True local misassembly 62582800 64651519 63182728 65250935 NC_060930.1 CM039039.1 99.78 True indel: indel (> 5bp) 64651611 65103317 65251019 65702654 NC_060930.1 CM039039.1 99.88 True local misassembly 65104657 65442958 65702655 66039679 NC_060930.1 CM039039.1 99.29 True local misassembly 65448931 65790165 66040053 66380931 NC_060930.1 CM039039.1 99.46 True local misassembly 65793292 66596589 66380932 67184402 NC_060930.1 CM039039.1 99.84 True local misassembly 66597139 66906814 67185199 67495388 NC_060930.1 CM039039.1 99.43 True local misassembly 66907608 67003808 67495389 67591620 NC_060930.1 CM039039.1 99.78 True local misassembly 67010388 67176003 67591667 67757978 NC_060930.1 CM039039.1 98.97 True local misassembly 67176122 68563655 67758194 69148103 NC_060930.1 CM039039.1 99.64 True local misassembly 68564096 68965579 69148797 69550528 NC_060930.1 CM039039.1 99.43 True local misassembly 68965824 69452241 69550627 70037151 NC_060930.1 CM039039.1 99.79 True relocation, inconsistency = 12844 69465086 72784765 70037152 73355681 NC_060930.1 CM039039.1 99.78 True local misassembly 72784974 77724189 73355794 78283061 NC_060930.1 CM039039.1 99.2 True indel: indel (> 5bp) 77724533 78767676 78283460 79327734 NC_060930.1 CM039039.1 99.73 True local misassembly 78768599 78894316 79328622 79454830 NC_060930.1 CM039039.1 99.1 True relocation, inconsistency = 8465 78902782 81829333 79454831 82381977 NC_060930.1 CM039039.1 99.8 True local misassembly 81830033 84187671 82382515 84739873 NC_060930.1 CM039039.1 99.77 True local misassembly 84191380 86354451 84739874 86902983 NC_060930.1 CM039039.1 99.88 True indel: indel (> 5bp) 86354483 88336659 86903022 88887703 NC_060930.1 CM039039.1 99.7 True local misassembly 88336975 92174950 88887864 92725507 NC_060930.1 CM039039.1 99.76 True local misassembly 92175574 96671036 92726074 97221774 NC_060930.1 CM039039.1 99.78 True local misassembly 96673042 99126824 97223527 99677436 NC_060930.1 CM039039.1 99.88 True indel: indel (> 5bp) 99126878 104464782 99677455 105015687 NC_060930.1 CM039039.1 99.85 True relocation, inconsistency = 25409 104490196 116491664 105015692 117015210 NC_060930.1 CM039039.1 99.73 True indel: stretch of mismatches 116491723 121595747 117015269 122117740 NC_060930.1 CM039039.1 99.78 True local misassembly 121596201 130819724 122118051 131340173 NC_060930.1 CM039039.1 99.71 True local misassembly 130820563 131721835 131341113 132242498 NC_060930.1 CM039039.1 99.72 True fake: not a misassembly (possible transposable element) 131721836 131725943 132246603 132242499 NC_060930.1 CM039039.1 99.83 True fake: not a misassembly (possible transposable element) 131725944 140470542 132246604 140996487 NC_060930.1 CM039039.1 99.75 True local misassembly 140469907 142618028 141000079 143146879 NC_060930.1 CM039039.1 99.73 True indel: indel (> 5bp) 142618246 146017040 143147091 146548949 NC_060930.1 CM039039.1 99.75 True indel: indel (> 5bp) 146017085 154255244 146548968 154777545 NC_060930.1 CM039039.1 99.66 True local misassembly 154255259 154902627 154777796 155424563 NC_060930.1 CM039039.1 99.64 True indel: stretch of mismatches 154902654 155344086 155424590 155865981 NC_060930.1 CM039039.1 99.85 True local misassembly 155344079 156230970 155866065 156753191 NC_060930.1 CM039039.1 99.69 True local misassembly 156231166 158538894 156753535 159053991 NC_060930.1 CM039039.1 99.32 True local misassembly 158539081 159017123 159055058 159532838 NC_060930.1 CM039039.1 99.59 True local misassembly 159019744 159485233 159536881 160004219 NC_060930.1 CM039039.1 99.22 True local misassembly 159484925 160897907 160005020 161415310 NC_060930.1 CM039039.1 99.59 True local misassembly 160899118 160956997 161416061 161471534 NC_060930.1 CM039039.1 95.38 True indel: indel (> 5bp) 160957193 161904596 161471684 162418560 NC_060930.1 CM039039.1 99.75 True local misassembly 161899045 162911202 162418561 163430804 NC_060930.1 CM039039.1 99.85 True indel: indel (> 5bp) 162911240 163119656 163430904 163639391 NC_060930.1 CM039039.1 99.78 True indel: stretch of mismatches 163119657 163373213 163639392 163892973 NC_060930.1 CM039039.1 99.78 True local misassembly 163374830 164693219 163894319 165211936 NC_060930.1 CM039039.1 99.66 True local misassembly 164694194 165993014 165212589 166511527 NC_060930.1 CM039039.1 99.78 True local misassembly 165993617 166297316 166511861 166815337 NC_060930.1 CM039039.1 99.54 True local misassembly 166297963 167399401 166815753 167917825 NC_060930.1 CM039039.1 99.81 True local misassembly 167400291 167660539 167918822 168178707 NC_060930.1 CM039039.1 99.5 True local misassembly 167661391 168026192 168178835 168543920 NC_060930.1 CM039039.1 99.56 True indel: stretch of mismatches 168026264 168127008 168543992 168644333 NC_060930.1 CM039039.1 99.31 True local misassembly 168132002 168380621 168645167 168893362 NC_060930.1 CM039039.1 99.5 True local misassembly 168382076 168586752 168893363 169099470 NC_060930.1 CM039039.1 98.97 True indel: indel (> 5bp) 168586808 168803743 169099603 169317412 NC_060930.1 CM039039.1 99.21 True local misassembly 168804211 169576724 169317772 170089843 NC_060930.1 CM039039.1 99.18 True local misassembly 169579828 169580352 170093825 170094349 NC_060930.1 CM039039.1 98.48 True local misassembly 169580457 170341902 170094586 170855452 NC_060930.1 CM039039.1 99.44 True local misassembly 170343656 170376166 170857390 170889892 NC_060930.1 CM039039.1 99.73 True indel: indel (> 5bp) 170376178 170594456 170889936 171107386 NC_060930.1 CM039039.1 98.39 True local misassembly 170594867 171421528 171107509 171933001 NC_060930.1 CM039039.1 99.12 True local misassembly 171421961 171444865 171934048 171957020 NC_060930.1 CM039039.1 98.75 True indel: indel (<= 5bp) 171445247 171461930 171957403 171974086 NC_060930.1 CM039039.1 99.9 True indel: indel (<= 5bp) 171461931 171464385 171974088 171976542 NC_060930.1 CM039039.1 99.96 True indel: indel (<= 5bp) 171464388 171469774 171976543 171981929 NC_060930.1 CM039039.1 99.96 True indel: indel (> 5bp) 171469775 171471941 171981936 171984102 NC_060930.1 CM039039.1 99.4 True indel: indel (> 5bp) 171471942 171472515 171984109 171984682 NC_060930.1 CM039039.1 100.0 True local misassembly 171472630 171473168 171984683 171985221 NC_060930.1 CM039039.1 100.0 True indel: indel (> 5bp) 171473169 171475636 171985228 171987695 NC_060930.1 CM039039.1 99.68 True indel: indel (<= 5bp) 171475638 171485128 171987696 171997186 NC_060930.1 CM039039.1 99.82 True indel: indel (> 5bp) 171485189 171486221 171997187 171998219 NC_060930.1 CM039039.1 99.81 True indel: indel (<= 5bp) 171486223 171498610 171998220 172010607 NC_060930.1 CM039039.1 99.81 True indel: indel (> 5bp) 171498638 171500103 172010608 172012073 NC_060930.1 CM039039.1 99.39 True local misassembly 171500757 171502245 172012157 172013645 NC_060930.1 CM039039.1 99.87 True indel: indel (<= 5bp) 171502246 171504449 172013647 172015850 NC_060930.1 CM039039.1 99.86 True indel: indel (> 5bp) 171504469 171505824 172015851 172017206 NC_060930.1 CM039039.1 99.56 True local misassembly 171508242 171511405 172018753 172021916 NC_060930.1 CM039039.1 99.27 True local misassembly 171511893 171512824 172022589 172023520 NC_060930.1 CM039039.1 99.46 True indel: indel (<= 5bp) 171512826 171513516 172023521 172024211 NC_060930.1 CM039039.1 99.71 True indel: indel (<= 5bp) 171513518 171514635 172024212 172025329 NC_060930.1 CM039039.1 99.73 True indel: indel (<= 5bp) 171514998 171516143 172025691 172026836 NC_060930.1 CM039039.1 99.65 True local misassembly 171516286 171516877 172026837 172027428 NC_060930.1 CM039039.1 99.83 True indel: stretch of mismatches 171516970 171522317 172027521 172032868 NC_060930.1 CM039039.1 99.81 True indel: indel (> 5bp) 171522350 171523438 172032869 172033957 NC_060930.1 CM039039.1 99.91 True indel: indel (<= 5bp) 171523441 171525544 172033958 172036061 NC_060930.1 CM039039.1 99.9 True indel: indel (> 5bp) 171525834 171529191 172036357 172039714 NC_060930.1 CM039039.1 99.85 True indel: indel (<= 5bp) 171529192 171530103 172039717 172040628 NC_060930.1 CM039039.1 99.45 True indel: indel (> 5bp) 171530124 171530742 172040629 172041247 NC_060930.1 CM039039.1 98.55 True local misassembly 171530872 171531793 172046693 172047614 NC_060930.1 CM039039.1 98.92 True local misassembly 171531794 171533453 172047856 172049515 NC_060930.1 CM039039.1 99.58 True indel: indel (> 5bp) 171533550 171536783 172049618 172052851 NC_060930.1 CM039039.1 99.85 True local misassembly 171536784 171543260 172052967 172059443 NC_060930.1 CM039039.1 99.92 True indel: indel (> 5bp) 171543288 171544917 172059444 172061073 NC_060930.1 CM039039.1 99.88 True indel: indel (> 5bp) 171544918 171545472 172061080 172061634 NC_060930.1 CM039039.1 100.0 True indel: indel (> 5bp) 171545473 171546336 172061647 172062510 NC_060930.1 CM039039.1 100.0 True indel: indel (> 5bp) 171546347 171547112 172062511 172063276 NC_060930.1 CM039039.1 99.74 True local misassembly 171547452 171552419 172063277 172068244 NC_060930.1 CM039039.1 99.76 True local misassembly 171553214 171555698 172069267 172071751 NC_060930.1 CM039039.1 99.92 True indel: indel (<= 5bp) 171555699 171560674 172071753 172076728 NC_060930.1 CM039039.1 99.96 True indel: indel (<= 5bp) 171560675 171562500 172076730 172078555 NC_060930.1 CM039039.1 99.67 True indel: indel (<= 5bp) 171562501 171577704 172078561 172093764 NC_060930.1 CM039039.1 99.99 True local misassembly 171580218 171582412 172094392 172096586 NC_060930.1 CM039039.1 99.86 True indel: indel (<= 5bp) 171582413 171594818 172096588 172108993 NC_060930.1 CM039039.1 99.94 True indel: indel (<= 5bp) 171594819 171601743 172108995 172115919 NC_060930.1 CM039039.1 99.94 True indel: indel (> 5bp) 171602111 171605208 172116263 172119360 NC_060930.1 CM039039.1 99.58 True local misassembly 171606304 171612258 172119874 172125828 NC_060930.1 CM039039.1 99.9 True local misassembly 171612497 171615026 172126168 172128697 NC_060930.1 CM039039.1 99.64 True local misassembly 171615140 171622345 172128710 172135915 NC_060930.1 CM039039.1 99.76 True indel: indel (> 5bp) 171622346 171624146 172135929 172137729 NC_060930.1 CM039039.1 99.89 True local misassembly 171624147 171625544 172138019 172139416 NC_060930.1 CM039039.1 99.71 True indel: indel (<= 5bp) 171625546 171626208 172139417 172140079 NC_060930.1 CM039039.1 99.7 True local misassembly 171626209 171629395 172140284 172143470 NC_060930.1 CM039039.1 99.84 True indel: indel (<= 5bp) 171629396 171640570 172143475 172154649 NC_060930.1 CM039039.1 99.82 True indel: indel (> 5bp) 171640583 171662726 172154650 172176793 NC_060930.1 CM039039.1 99.98 True indel: indel (<= 5bp) 171662727 171665479 172176797 172179549 NC_060930.1 CM039039.1 100.0 True indel: indel (<= 5bp) 171665481 171671419 172179550 172185488 NC_060930.1 CM039039.1 99.92 True indel: indel (<= 5bp) 171671420 171674745 172185490 172188815 NC_060930.1 CM039039.1 99.97 True indel: indel (<= 5bp) 171674747 171684539 172188816 172198608 NC_060930.1 CM039039.1 99.99 True indel: indel (<= 5bp) 171684540 171693234 172198610 172207304 NC_060930.1 CM039039.1 99.97 True indel: indel (<= 5bp) 171693239 171718082 172207305 172232148 NC_060930.1 CM039039.1 99.97 True indel: indel (<= 5bp) 171718084 171719888 172232149 172233953 NC_060930.1 CM039039.1 99.89 True indel: indel (> 5bp) 171719889 171727508 172233962 172241581 NC_060930.1 CM039039.1 99.97 True indel: indel (<= 5bp) 171727511 171751837 172241582 172265908 NC_060930.1 CM039039.1 99.93 True indel: indel (<= 5bp) 171751841 171752607 172265909 172266675 NC_060930.1 CM039039.1 100.0 True indel: indel (<= 5bp) 171752608 171753111 172266678 172267181 NC_060930.1 CM039039.1 100.0 True indel: indel (> 5bp) 171753112 171756825 172267220 172270933 NC_060930.1 CM039039.1 99.76 True relocation, inconsistency = 12037 171770043 171772942 172272114 172275013 NC_060930.1 CM039039.1 99.72 True indel: indel (<= 5bp) 171772943 171774428 172275015 172276500 NC_060930.1 CM039039.1 99.93 True indel: indel (<= 5bp) 171774430 171777009 172276501 172279080 NC_060930.1 CM039039.1 99.61 True indel: indel (<= 5bp) 171777010 171778725 172279082 172280797 NC_060930.1 CM039039.1 99.42 True indel: indel (> 5bp) 171778739 171780378 172280798 172282437 NC_060930.1 CM039039.1 99.39 True indel: indel (<= 5bp) 171780383 171781030 172282438 172283085 NC_060930.1 CM039039.1 100.0 True indel: indel (<= 5bp) 171781031 171806704 172283087 172308760 NC_060930.1 CM039039.1 99.95 True indel: indel (> 5bp) 171806705 171812579 172308844 172314718 NC_060930.1 CM039039.1 99.93 True indel: indel (<= 5bp) 171812580 171817976 172314720 172320116 NC_060930.1 CM039039.1 99.87 True indel: indel (<= 5bp) 171817979 171821384 172320117 172323522 NC_060930.1 CM039039.1 99.79 True local misassembly 171821892 171830089 172324342 172332539 NC_060930.1 CM039039.1 99.88 True indel: indel (> 5bp) 171830127 171830645 172332540 172333058 NC_060930.1 CM039039.1 99.61 True local misassembly 171831184 171837809 172333180 172339805 NC_060930.1 CM039039.1 99.94 True local misassembly 171839795 171841600 172342519 172344324 NC_060930.1 CM039039.1 99.56 True local misassembly 171842300 171847128 172344597 172349425 NC_060930.1 CM039039.1 99.86 True local misassembly 171847129 171848044 172349580 172350495 NC_060930.1 CM039039.1 99.89 True indel: indel (<= 5bp) 171848046 171848622 172350496 172351072 NC_060930.1 CM039039.1 99.65 True indel: indel (<= 5bp) 171848624 171851148 172351073 172353597 NC_060930.1 CM039039.1 99.88 True local misassembly 171851149 171853516 172353697 172356064 NC_060930.1 CM039039.1 99.92 True indel: indel (<= 5bp) 171853518 171854740 172356065 172357287 NC_060930.1 CM039039.1 99.75 True indel: indel (<= 5bp) 171854741 171856538 172357292 172359089 NC_060930.1 CM039039.1 99.78 True indel: indel (<= 5bp) 171856539 171858914 172359091 172361466 NC_060930.1 CM039039.1 99.58 True indel: indel (> 5bp) 171858915 171863633 172361479 172366197 NC_060930.1 CM039039.1 99.75 True indel: indel (<= 5bp) 171863634 171864516 172366202 172367084 NC_060930.1 CM039039.1 99.55 True indel: indel (<= 5bp) 171864723 171865544 172367293 172368114 NC_060930.1 CM039039.1 99.51 True indel: indel (<= 5bp) 171865548 171867250 172368115 172369817 NC_060930.1 CM039039.1 99.41 True local misassembly 171869248 171869921 172370536 172371209 NC_060930.1 CM039039.1 96.29 True local misassembly 171870271 171871248 172371362 172372339 NC_060930.1 CM039039.1 98.98 True indel: indel (<= 5bp) 171871249 171871905 172372342 172372998 NC_060930.1 CM039039.1 99.7 True indel: indel (<= 5bp) 171871906 171876134 172373000 172377228 NC_060930.1 CM039039.1 99.79 True local misassembly 171876387 171877110 172377229 172377952 NC_060930.1 CM039039.1 99.45 True indel: indel (> 5bp) 171877183 171879929 172377953 172380699 NC_060930.1 CM039039.1 99.67 True indel: indel (<= 5bp) 171879932 171881472 172380700 172382240 NC_060930.1 CM039039.1 99.74 True local misassembly 171881836 171893586 172383057 172394807 NC_060930.1 CM039039.1 99.87 True indel: indel (<= 5bp) 171893587 171894563 172394809 172395785 NC_060930.1 CM039039.1 99.8 True indel: indel (<= 5bp) 171894564 171895517 172395787 172396740 NC_060930.1 CM039039.1 99.9 True indel: indel (<= 5bp) 171895519 171900327 172396741 172401549 NC_060930.1 CM039039.1 99.98 True indel: indel (> 5bp) 171900328 171902961 172401557 172404190 NC_060930.1 CM039039.1 99.96 True indel: indel (<= 5bp) 171903200 171903922 172404434 172405156 NC_060930.1 CM039039.1 99.86 True indel: indel (<= 5bp) 171903926 171906162 172405157 172407393 NC_060930.1 CM039039.1 99.96 True indel: indel (<= 5bp) 171906163 171908237 172407395 172409469 NC_060930.1 CM039039.1 99.86 True indel: indel (<= 5bp) 171908549 171914147 172409779 172415377 NC_060930.1 CM039039.1 99.84 True indel: indel (> 5bp) 171914148 171917773 172415386 172419011 NC_060930.1 CM039039.1 99.86 True indel: indel (<= 5bp) 171917775 171921432 172419012 172422669 NC_060930.1 CM039039.1 99.78 True indel: indel (<= 5bp) 171921437 171924459 172422670 172425692 NC_060930.1 CM039039.1 99.83 True indel: indel (<= 5bp) 171924460 171926070 172425695 172427305 NC_060930.1 CM039039.1 99.88 True indel: indel (<= 5bp) 171926071 171929926 172427307 172431162 NC_060930.1 CM039039.1 99.87 True indel: indel (<= 5bp) 171929927 171931284 172431165 172432522 NC_060930.1 CM039039.1 100.0 True indel: indel (<= 5bp) 171931288 171935477 172432523 172436712 NC_060930.1 CM039039.1 99.83 True indel: indel (<= 5bp) 171935520 171938584 172436752 172439816 NC_060930.1 CM039039.1 99.93 True indel: indel (> 5bp) 171938585 171940089 172439833 172441337 NC_060930.1 CM039039.1 99.87 True indel: indel (<= 5bp) 171940093 171941992 172441338 172443237 NC_060930.1 CM039039.1 99.84 True indel: indel (<= 5bp) 171942354 171943627 172443594 172444867 NC_060930.1 CM039039.1 99.76 True indel: indel (<= 5bp) 171943630 171951719 172444868 172452957 NC_060930.1 CM039039.1 99.94 True indel: indel (<= 5bp) 171951721 171952824 172452958 172454061 NC_060930.1 CM039039.1 99.82 True indel: indel (<= 5bp) 171952825 171956944 172454063 172458182 NC_060930.1 CM039039.1 99.9 True indel: indel (<= 5bp) 171957386 171959493 172458619 172460726 NC_060930.1 CM039039.1 99.86 True indel: indel (<= 5bp) 171959495 171963740 172460727 172464972 NC_060930.1 CM039039.1 99.91 True indel: indel (<= 5bp) 171963743 171966320 172464973 172467550 NC_060930.1 CM039039.1 100.0 True indel: indel (> 5bp) 171966329 171974916 172467551 172476138 NC_060930.1 CM039039.1 99.8 True indel: indel (<= 5bp) 171974917 171977052 172476140 172478275 NC_060930.1 CM039039.1 99.95 True indel: indel (<= 5bp) 171977053 171980730 172478280 172481957 NC_060930.1 CM039039.1 99.95 True indel: indel (<= 5bp) 171980731 171984158 172481960 172485387 NC_060930.1 CM039039.1 99.85 True indel: indel (<= 5bp) 171984329 171985522 172485557 172486750 NC_060930.1 CM039039.1 99.92 True indel: indel (<= 5bp) 171985523 171986108 172486753 172487338 NC_060930.1 CM039039.1 99.66 True indel: indel (<= 5bp) 171986109 171987518 172487343 172488752 NC_060930.1 CM039039.1 99.72 True local misassembly 171988292 171989764 172489499 172490971 NC_060930.1 CM039039.1 99.46 True indel: indel (<= 5bp) 171989765 171990668 172490977 172491880 NC_060930.1 CM039039.1 99.56 True indel: indel (<= 5bp) 171990672 171993281 172491881 172494490 NC_060930.1 CM039039.1 98.93 True indel: indel (<= 5bp) 171993745 171997235 172494951 172498441 NC_060930.1 CM039039.1 99.2 True indel: indel (> 5bp) 171997436 172009947 172498632 172511143 NC_060930.1 CM039039.1 99.78 True indel: indel (<= 5bp) 172009949 172015255 172511144 172516450 NC_060930.1 CM039039.1 99.81 True indel: indel (<= 5bp) 172015256 172016736 172516455 172517935 NC_060930.1 CM039039.1 99.46 True indel: indel (<= 5bp) 172016738 172020097 172517936 172521295 NC_060930.1 CM039039.1 98.66 True local misassembly 172021666 172023487 172522859 172524680 NC_060930.1 CM039039.1 98.57 True indel: indel (<= 5bp) 172023488 172025428 172524683 172526623 NC_060930.1 CM039039.1 98.97 True local misassembly 172026075 172027078 172527272 172528275 NC_060930.1 CM039039.1 98.01 True local misassembly 172027925 172028434 172529126 172529635 NC_060930.1 CM039039.1 96.86 True indel: indel (<= 5bp) 172028436 172029212 172529636 172530412 NC_060930.1 CM039039.1 98.84 True indel: indel (<= 5bp) 172029354 172029891 172530552 172531089 NC_060930.1 CM039039.1 99.26 True indel: indel (<= 5bp) 172029893 172031580 172531090 172532777 NC_060930.1 CM039039.1 97.27 True local misassembly 172032183 172032740 172535300 172535857 NC_060930.1 CM039039.1 98.57 True indel: indel (<= 5bp) 172032741 172035192 172535860 172538311 NC_060930.1 CM039039.1 99.8 True indel: indel (<= 5bp) 172035194 172041310 172538312 172544428 NC_060930.1 CM039039.1 99.8 True indel: indel (<= 5bp) 172041313 172043738 172544429 172546854 NC_060930.1 CM039039.1 99.51 True indel: indel (<= 5bp) 172043744 172046991 172546855 172550102 NC_060930.1 CM039039.1 99.45 True indel: indel (> 5bp) 172047142 172048789 172550217 172551864 NC_060930.1 CM039039.1 99.7 True indel: indel (<= 5bp) 172048790 172050340 172551869 172553419 NC_060930.1 CM039039.1 99.74 True indel: indel (> 5bp) 172050347 172051574 172553420 172554647 NC_060930.1 CM039039.1 99.92 True indel: indel (<= 5bp) 172051575 172052914 172554649 172555988 NC_060930.1 CM039039.1 99.78 True indel: indel (<= 5bp) 172053263 172055500 172556333 172558570 NC_060930.1 CM039039.1 99.82 True indel: indel (<= 5bp) 172055502 172057032 172558571 172560101 NC_060930.1 CM039039.1 99.61 True indel: indel (<= 5bp) 172057034 172059675 172560102 172562743 NC_060930.1 CM039039.1 99.7 True indel: indel (> 5bp) 172059924 172060924 172562998 172563998 NC_060930.1 CM039039.1 100.0 True indel: indel (<= 5bp) 172060926 172061987 172563999 172565060 NC_060930.1 CM039039.1 99.91 True indel: indel (<= 5bp) 172061990 172068078 172565061 172571149 NC_060930.1 CM039039.1 99.7 True indel: indel (<= 5bp) 172068383 172070409 172571450 172573476 NC_060930.1 CM039039.1 99.75 True indel: indel (> 5bp) 172070410 172071214 172573493 172574297 NC_060930.1 CM039039.1 99.01 True indel: indel (> 5bp) 172071215 172071898 172574310 172574993 NC_060930.1 CM039039.1 99.56 True indel: indel (<= 5bp) 172071900 172073550 172574994 172576644 NC_060930.1 CM039039.1 98.85 True indel: indel (> 5bp) 172073742 172076582 172576850 172579690 NC_060930.1 CM039039.1 99.33 True indel: indel (<= 5bp) 172076928 172077852 172580040 172580964 NC_060930.1 CM039039.1 99.35 True indel: indel (> 5bp) 172078346 172081115 172581451 172584220 NC_060930.1 CM039039.1 99.57 True indel: indel (<= 5bp) 172081117 172082330 172584221 172585434 NC_060930.1 CM039039.1 99.18 True local misassembly 172088282 172090757 172585868 172588343 NC_060930.1 CM039039.1 98.91 True indel: indel (> 5bp) 172091249 172092539 172588827 172590117 NC_060930.1 CM039039.1 99.69 True indel: indel (> 5bp) 172092559 172093186 172590118 172590745 NC_060930.1 CM039039.1 99.36 True indel: indel (<= 5bp) 172093187 172094563 172590747 172592123 NC_060930.1 CM039039.1 99.56 True indel: indel (<= 5bp) 172094567 172096995 172592124 172594552 NC_060930.1 CM039039.1 99.3 True indel: indel (<= 5bp) 172096996 172097923 172594554 172595481 NC_060930.1 CM039039.1 99.25 True local misassembly 172098055 172099309 172595482 172596736 NC_060930.1 CM039039.1 99.84 True indel: indel (> 5bp) 172099586 172100526 172597001 172597941 NC_060930.1 CM039039.1 99.26 True local misassembly 172100539 172101481 172598144 172599086 NC_060930.1 CM039039.1 98.09 True indel: indel (<= 5bp) 172101483 172101993 172599087 172599597 NC_060930.1 CM039039.1 99.61 True indel: indel (<= 5bp) 172102114 172107407 172599720 172605013 NC_060930.1 CM039039.1 99.45 True local misassembly 172107871 172109292 172605800 172607221 NC_060930.1 CM039039.1 98.87 True local misassembly 172109919 172111757 172607851 172609689 NC_060930.1 CM039039.1 98.92 True translocation 3406 22557 172628870 172609690 NC_060931.1 CM039039.1 98.75 True translocation 61705595 61706647 172633842 172634894 NC_060943.1 CM039039.1 99.81 True CONTIG CM039039.1 172635743 misassembled 58357587 58378449 22 20878 NC_060930.1 JAKCWS010000054.1 98.09 True relocation, inconsistency = -22591 58355859 58378449 20879 43123 NC_060930.1 JAKCWS010000054.1 96.56 True relocation, inconsistency = -37880 58340570 58379838 43124 82372 NC_060930.1 JAKCWS010000054.1 98.02 True local misassembly 58374405 58378449 82373 86417 NC_060930.1 JAKCWS010000054.1 98.44 True relocation, inconsistency = -22591 58355859 58375409 86418 105962 NC_060930.1 JAKCWS010000054.1 98.07 True local misassembly 58374224 58378899 105963 110638 NC_060930.1 JAKCWS010000054.1 98.52 True relocation, inconsistency = -29046 58349854 58378478 110639 139592 NC_060930.1 JAKCWS010000054.1 96.96 True relocation, inconsistency = -28707 58349772 58378478 139593 168291 NC_060930.1 JAKCWS010000054.1 98.08 True local misassembly 58374236 58378449 168292 172505 NC_060930.1 JAKCWS010000054.1 98.41 True relocation, inconsistency = -10359 58368091 58378449 172506 182862 NC_060930.1 JAKCWS010000054.1 98.09 True relocation, inconsistency = -47055 58331395 58375409 182863 226863 NC_060930.1 JAKCWS010000054.1 98.07 True local misassembly 58374224 58378449 226864 231089 NC_060930.1 JAKCWS010000054.1 98.31 True relocation, inconsistency = -16475 58361975 58369293 231090 238406 NC_060930.1 JAKCWS010000054.1 98.13 True relocation, inconsistency = -10359 58358935 58359796 238407 239268 NC_060930.1 JAKCWS010000054.1 98.29 True indel: indel (<= 5bp) 58359943 58378449 239412 257914 NC_060930.1 JAKCWS010000054.1 98.05 True relocation, inconsistency = -28707 58349743 58381535 257915 289699 NC_060930.1 JAKCWS010000054.1 98.07 True relocation, inconsistency = -19532 58362004 58372335 289700 300024 NC_060930.1 JAKCWS010000054.1 97.9 True relocation, inconsistency = -80674 58291662 58350417 300025 361499 NC_060930.1 JAKCWS010000054.1 96.35 True relocation, inconsistency = -61138 58289280 58426071 361500 498632 NC_060930.1 JAKCWS010000054.1 98.09 True relocation, inconsistency = -97829 58328243 58424756 498633 595136 NC_060930.1 JAKCWS010000054.1 98.31 True CONTIG JAKCWS010000054.1 595136 misassembled 58338592 58424631 86045 7 NC_060930.1 JAKCWS010000063.1 98.39 True relocation, inconsistency = -36187 58367998 58374778 92824 86046 NC_060930.1 JAKCWS010000063.1 97.91 True relocation, inconsistency = -58074 58325279 58426071 193611 92825 NC_060930.1 JAKCWS010000063.1 98.27 True relocation, inconsistency = -40941 58358918 58366219 200911 193612 NC_060930.1 JAKCWS010000063.1 98.1 True local misassembly 58361932 58363160 202140 200912 NC_060930.1 JAKCWS010000063.1 98.48 True CONTIG JAKCWS010000063.1 202140 misassembled 58314379 58359592 1 45212 NC_060930.1 JAKCWS010000064.1 98.38 True relocation, inconsistency = -70313 58289280 58420958 45213 176896 NC_060930.1 JAKCWS010000064.1 98.34 True CONTIG JAKCWS010000064.1 176940 misassembled 58361975 58382099 20127 6 NC_060930.1 JAKCWS010000065.1 98.39 True relocation, inconsistency = -16475 58365063 58378449 33512 20128 NC_060930.1 JAKCWS010000065.1 98.13 True relocation, inconsistency = -28697 58361992 58393759 65280 33513 NC_060930.1 JAKCWS010000065.1 98.5 True local misassembly 58331512 58363177 97610 65281 NC_060930.1 JAKCWS010000065.1 95.98 True relocation, inconsistency = -47394 58374236 58378905 102280 97611 NC_060930.1 JAKCWS010000065.1 98.54 True local misassembly 58365034 58378478 115723 102281 NC_060930.1 JAKCWS010000065.1 98.17 True relocation, inconsistency = -13416 58374405 58378449 119768 115724 NC_060930.1 JAKCWS010000065.1 98.46 True local misassembly 58374224 58379838 125383 119769 NC_060930.1 JAKCWS010000065.1 98.53 True local misassembly 58341530 58369293 153136 125384 NC_060930.1 JAKCWS010000065.1 98.0 True CONTIG JAKCWS010000065.1 153136 misassembled 58419958 58425335 5378 1 NC_060930.1 JAKCWS010000066.1 98.32 True local misassembly 58289280 58426071 142143 5379 NC_060930.1 JAKCWS010000066.1 98.32 True local misassembly 58290882 58295393 146655 142144 NC_060930.1 JAKCWS010000066.1 98.32 True CONTIG JAKCWS010000066.1 146655 correct 58314774 58341713 2 26954 NC_060930.1 JAKCWS010000067.1 97.92 True indel: indel (<= 5bp) 58341848 58360118 27090 45354 NC_060930.1 JAKCWS010000067.1 98.05 True indel: indel (<= 5bp) 58360196 58426071 45433 111317 NC_060930.1 JAKCWS010000067.1 98.65 True relocation, inconsistency = -42788 58383284 58416370 111318 144406 NC_060930.1 JAKCWS010000067.1 98.86 True CONTIG JAKCWS010000067.1 144406 misassembled 58353462 58396961 43494 1 NC_060930.1 JAKCWS010000068.1 98.48 True relocation, inconsistency = -15800 58361882 58369261 50872 43495 NC_060930.1 JAKCWS010000068.1 98.07 True relocation, inconsistency = -64190 58333552 58426071 143389 50873 NC_060930.1 JAKCWS010000068.1 98.53 True CONTIG JAKCWS010000068.1 143389 misassembled 58361443 58378458 1 17012 NC_060930.1 JAKCWS010000055.1 98.15 True relocation, inconsistency = -50114 58328346 58363177 17014 51833 NC_060930.1 JAKCWS010000055.1 98.0 True local misassembly 58358935 58378478 51834 71373 NC_060930.1 JAKCWS010000055.1 98.17 True relocation, inconsistency = -16475 58362004 58369276 71374 78644 NC_060930.1 JAKCWS010000055.1 98.07 True relocation, inconsistency = -10359 58358918 58402928 78645 122657 NC_060930.1 JAKCWS010000055.1 98.55 True relocation, inconsistency = -37866 58365063 58372335 122658 129928 NC_060930.1 JAKCWS010000055.1 98.03 True relocation, inconsistency = -10361 58361975 58378449 129929 146392 NC_060930.1 JAKCWS010000055.1 98.01 True relocation, inconsistency = -22591 58355859 58378478 146393 169003 NC_060930.1 JAKCWS010000055.1 98.13 True local misassembly 58374236 58378478 169004 173246 NC_060930.1 JAKCWS010000055.1 98.36 True local misassembly 58377293 58379815 173247 175769 NC_060930.1 JAKCWS010000055.1 98.99 True local misassembly 58374382 58378449 175770 179837 NC_060930.1 JAKCWS010000055.1 98.49 True local misassembly 58374207 58378478 179838 184109 NC_060930.1 JAKCWS010000055.1 98.36 True local misassembly 58374236 58378449 184110 188323 NC_060930.1 JAKCWS010000055.1 98.31 True relocation, inconsistency = -16475 58361975 58378478 188324 204823 NC_060930.1 JAKCWS010000055.1 98.12 True local misassembly 58374236 58378905 204824 209493 NC_060930.1 JAKCWS010000055.1 98.54 True relocation, inconsistency = -13755 58365151 58378478 209494 222819 NC_060930.1 JAKCWS010000055.1 98.24 True local misassembly 58374236 58378449 222820 227033 NC_060930.1 JAKCWS010000055.1 98.36 True relocation, inconsistency = -22591 58355859 58381535 227034 252704 NC_060930.1 JAKCWS010000055.1 98.26 True relocation, inconsistency = -19532 58362004 58378444 252705 269141 NC_060930.1 JAKCWS010000055.1 98.18 True relocation, inconsistency = 128919 58507365 58532031 269143 293816 NC_060930.1 JAKCWS010000055.1 98.9 True relocation, inconsistency = -181566 58350824 58384591 294175 327935 NC_060930.1 JAKCWS010000055.1 98.27 True relocation, inconsistency = -28704 58355888 58375409 327936 347451 NC_060930.1 JAKCWS010000055.1 97.96 True relocation, inconsistency = -13418 58361992 58378449 347452 363905 NC_060930.1 JAKCWS010000055.1 98.07 True relocation, inconsistency = -22591 58355859 58378478 363906 386512 NC_060930.1 JAKCWS010000055.1 97.98 True relocation, inconsistency = -13416 58365063 58372335 386513 393783 NC_060930.1 JAKCWS010000055.1 97.96 True relocation, inconsistency = -68448 58303888 58418209 393784 508783 NC_060930.1 JAKCWS010000055.1 97.72 True relocation, inconsistency = -50090 58368120 58378449 508784 519111 NC_060930.1 JAKCWS010000055.1 98.13 True relocation, inconsistency = -25650 58352800 58377890 519112 544187 NC_060930.1 JAKCWS010000055.1 98.07 True CONTIG JAKCWS010000055.1 544187 misassembled 58377293 58380240 2957 10 NC_060930.1 JAKCWS010000056.1 99.33 True local misassembly 58374207 58378478 7229 2958 NC_060930.1 JAKCWS010000056.1 98.38 True local misassembly 58374236 58378449 11443 7230 NC_060930.1 JAKCWS010000056.1 98.38 True local misassembly 58374207 58378478 15715 11444 NC_060930.1 JAKCWS010000056.1 98.38 True local misassembly 58374236 58378449 19929 15716 NC_060930.1 JAKCWS010000056.1 98.41 True local misassembly 58374207 58378478 24201 19930 NC_060930.1 JAKCWS010000056.1 98.43 True local misassembly 58374236 58378449 28415 24202 NC_060930.1 JAKCWS010000056.1 98.43 True local misassembly 58374224 58378478 32670 28416 NC_060930.1 JAKCWS010000056.1 98.34 True local misassembly 58358918 58369293 43044 32671 NC_060930.1 JAKCWS010000056.1 98.12 True relocation, inconsistency = -19532 58374236 58378449 47258 43045 NC_060930.1 JAKCWS010000056.1 98.41 True local misassembly 58374207 58378478 51530 47259 NC_060930.1 JAKCWS010000056.1 98.29 True local misassembly 58366115 58369276 54692 51531 NC_060930.1 JAKCWS010000056.1 98.36 True fake: not a misassembly (possible transposable element) 58374224 58378478 59490 55236 NC_060930.1 JAKCWS010000056.1 98.27 True fake: not a misassembly (possible transposable element) 58355888 58363177 66778 59491 NC_060930.1 JAKCWS010000056.1 98.16 True relocation, inconsistency = -22591 58368091 58378478 77164 66779 NC_060930.1 JAKCWS010000056.1 98.12 True relocation, inconsistency = -10359 58374236 58378449 81378 77165 NC_060930.1 JAKCWS010000056.1 98.31 True local misassembly 58374236 58378478 85621 81379 NC_060930.1 JAKCWS010000056.1 98.38 True relocation, inconsistency = -50087 58289280 58424322 220667 85622 NC_060930.1 JAKCWS010000056.1 98.3 True relocation, inconsistency = -106996 58314975 58396275 301958 220668 NC_060930.1 JAKCWS010000056.1 98.34 True relocation, inconsistency = -71343 58352462 58386317 336480 301959 NC_060930.1 JAKCWS010000056.1 96.39 True translocation 49456085 49462738 343507 336850 NC_060929.1 JAKCWS010000056.1 97.87 True local misassembly 49456085 49460161 347584 343508 NC_060929.1 JAKCWS010000056.1 97.87 True relocation, inconsistency = 20041 49432572 49436034 351058 347594 NC_060929.1 JAKCWS010000056.1 98.1 True local misassembly 49432893 49436306 354474 351059 NC_060929.1 JAKCWS010000056.1 98.03 True CONTIG JAKCWS010000056.1 354474 misassembled 58392452 58410642 18175 1 NC_060930.1 JAKCWS010000057.1 98.8 True relocation, inconsistency = -33620 58338804 58426071 105445 18176 NC_060930.1 JAKCWS010000057.1 98.46 True relocation, inconsistency = -73372 58331302 58412096 186315 105525 NC_060930.1 JAKCWS010000057.1 98.3 True relocation, inconsistency = -94770 58300043 58426071 312339 186316 NC_060930.1 JAKCWS010000057.1 98.37 True indel: indel (<= 5bp) 58298820 58299728 313564 312653 NC_060930.1 JAKCWS010000057.1 97.48 True CONTIG JAKCWS010000057.1 313587 misassembled 58361975 58378305 16320 1 NC_060930.1 JAKCWS010000058.1 98.02 True relocation, inconsistency = -7302 58365063 58369276 20534 16321 NC_060930.1 JAKCWS010000058.1 98.24 True relocation, inconsistency = -13416 58365063 58378478 33948 20535 NC_060930.1 JAKCWS010000058.1 98.14 True relocation, inconsistency = -16473 58358947 58381535 56533 33949 NC_060930.1 JAKCWS010000058.1 98.2 True relocation, inconsistency = -206702 58538102 58565648 84080 56534 NC_060930.1 JAKCWS010000058.1 98.98 True relocation, inconsistency = 138772 58358914 58399329 124497 84081 NC_060930.1 JAKCWS010000058.1 98.58 True relocation, inconsistency = -10359 58355859 58369261 137907 124509 NC_060930.1 JAKCWS010000058.1 98.17 True local misassembly 58316112 58353983 175777 137910 NC_060930.1 JAKCWS010000058.1 97.96 True relocation, inconsistency = -62338 58374224 58378449 180003 175778 NC_060930.1 JAKCWS010000058.1 98.41 True local misassembly 58362086 58375409 193323 180004 NC_060930.1 JAKCWS010000058.1 98.1 True relocation, inconsistency = -16814 58374236 58378899 197987 193324 NC_060930.1 JAKCWS010000058.1 98.52 True local misassembly 58358918 58378478 217544 197988 NC_060930.1 JAKCWS010000058.1 98.16 True relocation, inconsistency = -19532 58374236 58378449 221758 217545 NC_060930.1 JAKCWS010000058.1 98.29 True local misassembly 58374207 58378478 226030 221759 NC_060930.1 JAKCWS010000058.1 98.36 True local misassembly 58374405 58378449 230075 226031 NC_060930.1 JAKCWS010000058.1 98.49 True local misassembly 58374207 58379838 235707 230076 NC_060930.1 JAKCWS010000058.1 98.58 True local misassembly 58374236 58378449 239921 235708 NC_060930.1 JAKCWS010000058.1 98.38 True local misassembly 58355859 58378478 262528 239922 NC_060930.1 JAKCWS010000058.1 98.09 True relocation, inconsistency = -22591 58361975 58378449 278992 262529 NC_060930.1 JAKCWS010000058.1 98.02 True relocation, inconsistency = -19532 58374207 58381506 286292 278993 NC_060930.1 JAKCWS010000058.1 98.68 True relocation, inconsistency = -7300 58375491 58381506 292308 286293 NC_060930.1 JAKCWS010000058.1 98.88 True CONTIG JAKCWS010000058.1 292394 misassembled 58289280 58425783 136508 1 NC_060930.1 JAKCWS010000059.1 98.29 True relocation, inconsistency = -91716 58298382 58380995 219787 136509 NC_060930.1 JAKCWS010000059.1 97.83 True relocation, inconsistency = -70824 58361301 58369205 227690 219788 NC_060930.1 JAKCWS010000059.1 98.08 True CONTIG JAKCWS010000059.1 227690 misassembled 58363772 58372350 1 8575 NC_060930.1 JAKCWS010000060.1 98.05 True relocation, inconsistency = -16477 58355874 58363160 8576 15860 NC_060930.1 JAKCWS010000060.1 98.14 True local misassembly 58368091 58375409 15861 23177 NC_060930.1 JAKCWS010000060.1 97.96 True local misassembly 58374224 58378478 23178 27432 NC_060930.1 JAKCWS010000060.1 98.29 True relocation, inconsistency = -12907 58366115 58369276 27976 31137 NC_060930.1 JAKCWS010000060.1 98.3 True local misassembly 58374207 58378478 31138 35409 NC_060930.1 JAKCWS010000060.1 98.31 True local misassembly 58374236 58378449 35410 39623 NC_060930.1 JAKCWS010000060.1 98.41 True relocation, inconsistency = -13416 58365034 58378478 39624 53066 NC_060930.1 JAKCWS010000060.1 98.16 True relocation, inconsistency = -10359 58368120 58372335 53067 57280 NC_060930.1 JAKCWS010000060.1 97.93 True local misassembly 58374207 58378478 57281 61552 NC_060930.1 JAKCWS010000060.1 98.43 True local misassembly 58374236 58378478 61553 65794 NC_060930.1 JAKCWS010000060.1 98.36 True fake: not a misassembly (possible transposable element) 58362004 58363160 65795 66951 NC_060930.1 JAKCWS010000060.1 98.17 True fake: not a misassembly (possible transposable element) 58374207 58378467 66952 71212 NC_060930.1 JAKCWS010000060.1 98.43 True local misassembly 58374226 58378449 71214 75437 NC_060930.1 JAKCWS010000060.1 98.38 True local misassembly 58374207 58378478 75438 79709 NC_060930.1 JAKCWS010000060.1 98.31 True local misassembly 58374236 58378449 79710 83923 NC_060930.1 JAKCWS010000060.1 98.36 True local misassembly 58374207 58378478 83924 88195 NC_060930.1 JAKCWS010000060.1 98.38 True relocation, inconsistency = -47055 58331424 58332538 88196 89310 NC_060930.1 JAKCWS010000060.1 97.9 True relocation, inconsistency = 32453 58365034 58381535 89353 105852 NC_060930.1 JAKCWS010000060.1 98.34 True relocation, inconsistency = -22589 58358947 58363160 105853 110066 NC_060930.1 JAKCWS010000060.1 98.31 True local misassembly 58365034 58372335 110067 117366 NC_060930.1 JAKCWS010000060.1 98.1 True relocation, inconsistency = -10361 58361975 58396815 117367 152208 NC_060930.1 JAKCWS010000060.1 98.56 True relocation, inconsistency = -65392 58331424 58363160 152209 183935 NC_060930.1 JAKCWS010000060.1 97.93 True local misassembly 58358918 58391861 183936 216874 NC_060930.1 JAKCWS010000060.1 97.9 True CONTIG JAKCWS010000060.1 216874 misassembled 58314788 58396275 1 81456 NC_060930.1 JAKCWS010000061.1 98.37 True relocation, inconsistency = -106996 58289280 58423795 81457 215972 NC_060930.1 JAKCWS010000061.1 98.33 True CONTIG JAKCWS010000061.1 215972 misassembled 58377293 58379993 2701 1 NC_060930.1 JAKCWS010000062.1 99.27 True local misassembly 58368091 58381535 16144 2702 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58358918 58369276 26501 16145 NC_060930.1 JAKCWS010000062.1 98.18 True relocation, inconsistency = -19532 58374236 58378449 30715 26502 NC_060930.1 JAKCWS010000062.1 98.31 True local misassembly 58374207 58378478 34987 30716 NC_060930.1 JAKCWS010000062.1 98.34 True local misassembly 58374224 58378449 39213 34988 NC_060930.1 JAKCWS010000062.1 98.46 True local misassembly 58358918 58369293 49587 39214 NC_060930.1 JAKCWS010000062.1 98.17 True relocation, inconsistency = -19532 58374405 58378449 53632 49588 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58374207 58379838 59264 53633 NC_060930.1 JAKCWS010000062.1 98.53 True local misassembly 58374236 58378449 63478 59265 NC_060930.1 JAKCWS010000062.1 98.31 True local misassembly 58374207 58378478 67750 63479 NC_060930.1 JAKCWS010000062.1 98.34 True local misassembly 58374236 58378449 71964 67751 NC_060930.1 JAKCWS010000062.1 98.34 True local misassembly 58374207 58378478 76236 71965 NC_060930.1 JAKCWS010000062.1 98.31 True local misassembly 58374236 58378449 80450 76237 NC_060930.1 JAKCWS010000062.1 98.38 True local misassembly 58374207 58378478 84722 80451 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58368120 58369276 85879 84723 NC_060930.1 JAKCWS010000062.1 98.17 True relocation, inconsistency = -10359 58374207 58378478 90151 85880 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58374236 58378449 94365 90152 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58374236 58378478 98608 94366 NC_060930.1 JAKCWS010000062.1 98.36 True local misassembly 58365034 58378478 112051 98609 NC_060930.1 JAKCWS010000062.1 98.16 True relocation, inconsistency = -13416 58374207 58378449 116294 112052 NC_060930.1 JAKCWS010000062.1 98.41 True local misassembly 58366115 58369276 119456 116295 NC_060930.1 JAKCWS010000062.1 98.24 True local misassembly 58366115 58369261 123190 120044 NC_060930.1 JAKCWS010000062.1 98.25 True relocation, inconsistency = -12907 58374236 58378478 127976 123734 NC_060930.1 JAKCWS010000062.1 98.34 True relocation, inconsistency = -50087 58341161 58424322 211308 127977 NC_060930.1 JAKCWS010000062.1 98.28 True CONTIG JAKCWS010000062.1 211308 misassembled 61705546 61707255 1739 42 NC_060943.1 CM039040.1 98.37 True translocation 3498 594557 6494 598591 NC_060931.1 CM039040.1 98.47 True local misassembly 595398 1220343 599614 1225974 NC_060931.1 CM039040.1 98.19 True local misassembly 1220285 1231950 1226565 1238119 NC_060931.1 CM039040.1 98.41 True local misassembly 1231952 1233773 1239693 1241514 NC_060931.1 CM039040.1 99.62 True indel: indel (<= 5bp) 1233774 1235271 1241519 1243016 NC_060931.1 CM039040.1 99.73 True indel: indel (<= 5bp) 1235273 1235970 1243017 1243714 NC_060931.1 CM039040.1 99.86 True indel: indel (<= 5bp) 1236329 1237455 1244074 1245200 NC_060931.1 CM039040.1 99.91 True indel: indel (<= 5bp) 1237456 1238365 1245205 1246114 NC_060931.1 CM039040.1 99.89 True local misassembly 1238953 1240583 1246692 1248322 NC_060931.1 CM039040.1 99.69 True indel: indel (> 5bp) 1240768 1247985 1248535 1255752 NC_060931.1 CM039040.1 99.92 True local misassembly 1247986 1250122 1258546 1260682 NC_060931.1 CM039040.1 99.95 True indel: indel (<= 5bp) 1250123 1251728 1260684 1262289 NC_060931.1 CM039040.1 99.94 True indel: indel (> 5bp) 1251747 1256096 1262290 1266639 NC_060931.1 CM039040.1 99.93 True indel: indel (> 5bp) 1256097 1256906 1266703 1267512 NC_060931.1 CM039040.1 99.88 True indel: indel (<= 5bp) 1256907 1258481 1267516 1269090 NC_060931.1 CM039040.1 99.81 True indel: indel (<= 5bp) 1258482 1259244 1269095 1269857 NC_060931.1 CM039040.1 99.87 True local misassembly 1259444 1262174 1270272 1273002 NC_060931.1 CM039040.1 99.12 True indel: indel (<= 5bp) 1262175 1265652 1273007 1276484 NC_060931.1 CM039040.1 98.88 True indel: stretch of mismatches 1265674 1266383 1276506 1277215 NC_060931.1 CM039040.1 99.01 True local misassembly 1267842 1268385 1278681 1279224 NC_060931.1 CM039040.1 99.45 True indel: indel (> 5bp) 1268826 1270013 1279659 1280846 NC_060931.1 CM039040.1 98.99 True indel: indel (> 5bp) 1270112 1271178 1280904 1281970 NC_060931.1 CM039040.1 99.06 True indel: indel (> 5bp) 1271434 1272189 1282253 1283008 NC_060931.1 CM039040.1 98.94 True indel: indel (<= 5bp) 1272190 1273671 1283010 1284491 NC_060931.1 CM039040.1 99.93 True indel: indel (<= 5bp) 1273672 1274190 1284496 1285014 NC_060931.1 CM039040.1 99.23 True indel: indel (<= 5bp) 1274192 1276672 1285015 1287495 NC_060931.1 CM039040.1 99.64 True indel: indel (<= 5bp) 1276674 1277306 1287496 1288128 NC_060931.1 CM039040.1 99.68 True indel: indel (> 5bp) 1277319 1292945 1288129 1303755 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 1292947 1295822 1303756 1306631 NC_060931.1 CM039040.1 100.0 True local misassembly 1304579 1391970 1309459 1396314 NC_060931.1 CM039040.1 98.34 True indel: indel (> 5bp) 1391964 2044575 1396315 2046869 NC_060931.1 CM039040.1 98.97 True local misassembly 2044902 4507906 2047392 4509793 NC_060931.1 CM039040.1 99.44 True indel: indel (> 5bp) 4508090 4709011 4509997 4710907 NC_060931.1 CM039040.1 99.54 True relocation, inconsistency = 8503 4717515 4823173 4710908 4816515 NC_060931.1 CM039040.1 99.62 True indel: indel (> 5bp) 4823257 5566932 4816667 5560129 NC_060931.1 CM039040.1 99.72 True indel: indel (> 5bp) 5567026 10086405 5560232 10084121 NC_060931.1 CM039040.1 99.29 True indel: stretch of mismatches 10086435 13501993 10084151 13498936 NC_060931.1 CM039040.1 99.77 True local misassembly 13502892 16328705 13499834 16326076 NC_060931.1 CM039040.1 99.53 True fake: not a misassembly (possible transposable element) 40667724 40668691 16326077 16327044 NC_060943.1 CM039040.1 99.48 True fake: not a misassembly (possible transposable element) 16328456 19629443 16327045 19628079 NC_060931.1 CM039040.1 99.83 True local misassembly 19629652 20412928 19628606 20412084 NC_060931.1 CM039040.1 99.74 True local misassembly 20414721 27602960 20413333 27604167 NC_060931.1 CM039040.1 99.75 True indel: indel (> 5bp) 27603064 28248233 27604235 28249096 NC_060931.1 CM039040.1 99.77 True local misassembly 28248272 28698193 28249377 28699560 NC_060931.1 CM039040.1 99.71 True indel: indel (> 5bp) 28698377 30530508 28699730 30533933 NC_060931.1 CM039040.1 99.7 True indel: indel (> 5bp) 30530577 31688358 30534053 31690708 NC_060931.1 CM039040.1 99.68 True local misassembly 31690083 32025253 31690988 32026015 NC_060931.1 CM039040.1 99.83 True local misassembly 32025374 37433113 32026351 37430212 NC_060931.1 CM039040.1 99.73 True indel: indel (> 5bp) 37433310 38386328 37430454 38383231 NC_060931.1 CM039040.1 99.84 True local misassembly 38384496 38385064 38384151 38384719 NC_060931.1 CM039040.1 96.66 True local misassembly 38385847 38389690 38385490 38389336 NC_060931.1 CM039040.1 99.22 True relocation, inconsistency = 16092 38405783 38507613 38389337 38491263 NC_060931.1 CM039040.1 99.58 True relocation, inconsistency = 9150 38516764 38598981 38491264 38573160 NC_060931.1 CM039040.1 99.42 True indel: indel (> 5bp) 38599093 38766928 38573261 38741718 NC_060931.1 CM039040.1 99.41 True indel: indel (> 5bp) 38767009 44385626 38741780 44360786 NC_060931.1 CM039040.1 99.83 True indel: indel (> 5bp) 44385794 45071421 44360900 45046241 NC_060931.1 CM039040.1 99.67 True indel: indel (> 5bp) 45071570 46853806 45046361 46829795 NC_060931.1 CM039040.1 99.69 True indel: indel (<= 5bp) 46853846 50142783 46829839 50115376 NC_060931.1 CM039040.1 99.46 True indel: indel (> 5bp) 50142915 50286285 50115462 50258901 NC_060931.1 CM039040.1 99.64 True indel: indel (> 5bp) 50286379 52880049 50259053 52853170 NC_060931.1 CM039040.1 99.73 True local misassembly 52880221 54557988 52853243 54530955 NC_060931.1 CM039040.1 99.7 True local misassembly 54558088 56325037 54531715 56303471 NC_060931.1 CM039040.1 99.48 True indel: indel (> 5bp) 56325223 56365937 56303665 56344536 NC_060931.1 CM039040.1 98.3 True indel: indel (> 5bp) 56365956 56607480 56344588 56586282 NC_060931.1 CM039040.1 99.16 True relocation, inconsistency = -55751 56551730 56600227 56586283 56634862 NC_060931.1 CM039040.1 99.1 True relocation, inconsistency = -72385 56527843 56817253 56634863 56924210 NC_060931.1 CM039040.1 99.42 True fake: not a misassembly (possible transposable element) 14811186 14817201 56924225 56930238 NC_060935.1 CM039040.1 98.49 True fake: not a misassembly (possible transposable element) 56817257 57037740 56930249 57150711 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 7061 57044802 58420035 57150712 58514378 NC_060931.1 CM039040.1 98.88 True local misassembly 58425112 58473614 58514379 58563966 NC_060931.1 CM039040.1 97.44 True local misassembly 58476132 58527433 58567534 58618895 NC_060931.1 CM039040.1 99.05 True relocation, inconsistency = 7049 58534483 58874129 58618896 58958882 NC_060931.1 CM039040.1 99.82 True relocation, inconsistency = -85682 58874130 58878737 58963490 58958883 NC_060931.1 CM039040.1 99.43 True inversion 58878738 59528624 58963491 59613479 NC_060931.1 CM039040.1 99.93 True relocation, scaffold gap is present, inconsistency = 191962 59720600 60158479 60052043 59613493 NC_060931.1 CM039040.1 99.39 True relocation, inconsistency = 19137 59508169 59701462 60245337 60052044 NC_060931.1 CM039040.1 99.41 True relocation, scaffold gap is present, inconsistency = 429658 60131321 60421937 60245538 60536159 NC_060931.1 CM039040.1 99.98 True local misassembly 60428866 60429505 60542748 60543387 NC_060931.1 CM039040.1 99.06 True local misassembly 60429846 60431511 60543388 60545053 NC_060931.1 CM039040.1 99.28 True local misassembly 60432194 60433160 60545054 60546020 NC_060931.1 CM039040.1 99.38 True local misassembly 60437667 60441555 60550640 60554528 NC_060931.1 CM039040.1 98.28 True local misassembly 60442236 60444000 60554529 60556293 NC_060931.1 CM039040.1 99.32 True local misassembly 60444001 60447328 60556974 60560301 NC_060931.1 CM039040.1 98.59 True local misassembly 60448905 60453798 60561878 60566771 NC_060931.1 CM039040.1 97.9 True local misassembly 60460609 60461334 60566772 60567497 NC_060931.1 CM039040.1 97.89 True local misassembly 60456198 60457871 60568491 60570164 NC_060931.1 CM039040.1 98.82 True relocation, inconsistency = 7152 60465024 60466995 60570165 60572136 NC_060931.1 CM039040.1 99.95 True local misassembly 60466996 60467555 60574179 60574738 NC_060931.1 CM039040.1 95.36 True local misassembly 60467896 60473433 60574739 60580276 NC_060931.1 CM039040.1 99.17 True local misassembly 60467888 60470029 60580859 60583000 NC_060931.1 CM039040.1 98.88 True local misassembly 60475816 60476541 60583001 60583726 NC_060931.1 CM039040.1 96.65 True local misassembly 60470414 60481603 60583727 60594916 NC_060931.1 CM039040.1 99.71 True local misassembly 60488074 60490814 60594917 60597657 NC_060931.1 CM039040.1 98.87 True local misassembly 60490815 60491736 60598338 60599259 NC_060931.1 CM039040.1 99.57 True local misassembly 60492417 60493225 60599260 60600068 NC_060931.1 CM039040.1 97.55 True local misassembly 60486756 60489754 60600069 60603067 NC_060931.1 CM039040.1 99.03 True local misassembly 60495950 60497246 60603473 60604769 NC_060931.1 CM039040.1 98.23 True local misassembly 60492204 60495202 60605517 60608515 NC_060931.1 CM039040.1 99.17 True local misassembly 60500993 60502694 60608516 60610217 NC_060931.1 CM039040.1 99.17 True local misassembly 60503100 60510072 60610965 60617937 NC_060931.1 CM039040.1 99.43 True local misassembly 60511093 60529604 60617938 60636448 NC_060931.1 CM039040.1 99.64 True fake: not a misassembly (possible transposable element) 60522749 60527616 60637195 60642062 NC_060931.1 CM039040.1 99.16 True fake: not a misassembly (possible transposable element) 60536132 60543448 60642063 60649381 NC_060931.1 CM039040.1 98.99 True relocation, inconsistency = -16348 60527101 60547878 60649382 60670162 NC_060931.1 CM039040.1 99.41 True relocation, inconsistency = 11237 60559116 60562630 60670163 60673678 NC_060931.1 CM039040.1 99.49 True local misassembly 60557523 60563652 60673679 60679810 NC_060931.1 CM039040.1 99.51 True local misassembly 60557523 60573277 60679811 60695567 NC_060931.1 CM039040.1 99.71 True local misassembly 60574300 60575189 60695568 60696457 NC_060931.1 CM039040.1 99.76 True local misassembly 60571102 60592192 60696458 60717548 NC_060931.1 CM039040.1 99.91 True local misassembly 60592675 60598371 60719393 60725089 NC_060931.1 CM039040.1 99.84 True local misassembly 60597350 60640498 60725090 60768239 NC_060931.1 CM039040.1 99.87 True local misassembly 60634368 60648697 60768240 60782568 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 48372 60697628 60710558 60783127 60796395 NC_060931.1 CM039040.1 96.74 True relocation, inconsistency = 618103 61328662 61331712 60796396 60799446 NC_060931.1 CM039040.1 96.41 True relocation, inconsistency = -274191 61057522 61069455 60799447 60811381 NC_060931.1 CM039040.1 99.17 True relocation, inconsistency = -410679 60658777 60666616 60811382 60819221 NC_060931.1 CM039040.1 99.19 True local misassembly 60661507 60676149 60819222 60833864 NC_060931.1 CM039040.1 99.82 True relocation, inconsistency = -7495 60668661 60677498 60833871 60843045 NC_060931.1 CM039040.1 96.06 True relocation, inconsistency = 16011 60693510 60723977 60843046 60873513 NC_060931.1 CM039040.1 99.79 True local misassembly 60729085 60765006 60873514 60909434 NC_060931.1 CM039040.1 99.84 True local misassembly 60761941 60767108 60909435 60914605 NC_060931.1 CM039040.1 96.77 True local misassembly 60760981 60776750 60914606 60930375 NC_060931.1 CM039040.1 99.63 True relocation, inconsistency = -13281 60763470 60770401 60930376 60937307 NC_060931.1 CM039040.1 99.72 True local misassembly 60775512 60794045 60937308 60955841 NC_060931.1 CM039040.1 99.77 True local misassembly 60793024 60796922 60955842 60959740 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 20440 60817363 60862747 60959741 61006148 NC_060931.1 CM039040.1 97.34 True relocation, inconsistency = 37800 60900548 60908718 61006149 61014322 NC_060931.1 CM039040.1 99.43 True relocation, inconsistency = -18386 60890367 60910761 61014357 61034754 NC_060931.1 CM039040.1 99.41 True relocation, inconsistency = -7150 60903612 60920966 61034755 61052109 NC_060931.1 CM039040.1 99.69 True local misassembly 60924032 60930290 61052110 61058368 NC_060931.1 CM039040.1 99.96 True local misassembly 60930291 60941821 61060413 61071943 NC_060931.1 CM039040.1 99.95 True relocation, inconsistency = 7152 60948974 60976963 61071944 61099932 NC_060931.1 CM039040.1 99.78 True local misassembly 60970490 60977592 61099933 61107035 NC_060931.1 CM039040.1 97.33 True relocation, inconsistency = 64697 61042290 61046064 61107036 61110810 NC_060931.1 CM039040.1 99.48 True relocation, inconsistency = -66741 60979324 60995228 61110811 61126715 NC_060931.1 CM039040.1 99.45 True relocation, inconsistency = 17365 61012594 61021478 61126716 61135605 NC_060931.1 CM039040.1 99.16 True relocation, inconsistency = -18382 61003097 61008140 61135606 61140646 NC_060931.1 CM039040.1 99.49 True relocation, inconsistency = 128068 61136209 61156598 61140647 61161033 NC_060931.1 CM039040.1 99.8 True relocation, inconsistency = -136246 61020353 61060984 61161034 61201658 NC_060931.1 CM039040.1 99.75 True local misassembly 61062003 61066276 61201659 61205932 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 123984 61190261 61207504 61205933 61223177 NC_060931.1 CM039040.1 99.63 True relocation, inconsistency = -124323 61083182 61085014 61223178 61225010 NC_060931.1 CM039040.1 99.63 True local misassembly 61085015 61087254 61226033 61228272 NC_060931.1 CM039040.1 99.54 True local misassembly 61089981 61108039 61228273 61246331 NC_060931.1 CM039040.1 99.9 True local misassembly 61106336 61129556 61246332 61269554 NC_060931.1 CM039040.1 99.78 True relocation, inconsistency = 127045 61256602 61297766 61269555 61310721 NC_060931.1 CM039040.1 99.79 True local misassembly 61298789 61304135 61310722 61316068 NC_060931.1 CM039040.1 99.48 True relocation, inconsistency = -9196 61294940 61314315 61316069 61335444 NC_060931.1 CM039040.1 99.57 True local misassembly 61313294 61316973 61335445 61339124 NC_060931.1 CM039040.1 99.52 True local misassembly 61321062 61329647 61339125 61347710 NC_060931.1 CM039040.1 99.91 True local misassembly 61328626 61341201 61347711 61360286 NC_060931.1 CM039040.1 99.52 True local misassembly 61335070 61335653 61360287 61360870 NC_060931.1 CM039040.1 99.59 True local misassembly 61339742 61345990 61360871 61367119 NC_060931.1 CM039040.1 99.76 True local misassembly 61350761 61371583 61367120 61387943 NC_060931.1 CM039040.1 99.73 True local misassembly 61368176 61369713 61387944 61389481 NC_060931.1 CM039040.1 99.62 True local misassembly 61366648 61385333 61389482 61408169 NC_060931.1 CM039040.1 99.59 True local misassembly 61386356 61387607 61408170 61409421 NC_060931.1 CM039040.1 99.4 True local misassembly 61388630 61398047 61409422 61418839 NC_060931.1 CM039040.1 99.83 True local misassembly 61394975 61399102 61418840 61422967 NC_060931.1 CM039040.1 99.82 True local misassembly 61395348 61400063 61422968 61427676 NC_060931.1 CM039040.1 99.69 True local misassembly 61404834 61429289 61427677 61452140 NC_060931.1 CM039040.1 99.86 True indel: stretch of mismatches 61429290 61437887 61452141 61460738 NC_060931.1 CM039040.1 99.78 True local misassembly 61438910 61454861 61460739 61476690 NC_060931.1 CM039040.1 99.94 True relocation, inconsistency = -10902 61444074 61456257 61476805 61488988 NC_060931.1 CM039040.1 99.82 True local misassembly 61451148 61452537 61488989 61490378 NC_060931.1 CM039040.1 99.64 True fake: not a misassembly (possible transposable element) 61468206 61473142 61490379 61495315 NC_060931.1 CM039040.1 99.72 True fake: not a misassembly (possible transposable element) 61455771 61463841 61495316 61503388 NC_060931.1 CM039040.1 99.91 True local misassembly 61461798 61463944 61503389 61505535 NC_060931.1 CM039040.1 99.94 True local misassembly 61459859 61465086 61505536 61510765 NC_060931.1 CM039040.1 99.91 True indel: stretch of mismatches 61465087 61473255 61510766 61518934 NC_060931.1 CM039040.1 99.87 True relocation, inconsistency = 8176 61481432 61486338 61518935 61523841 NC_060931.1 CM039040.1 99.9 True relocation, inconsistency = -22484 61467131 61469263 61527118 61529250 NC_060931.1 CM039040.1 99.68 True relocation, inconsistency = 41902 61511166 61519495 61529251 61537580 NC_060931.1 CM039040.1 99.75 True local misassembly 61523615 61538964 61538634 61553983 NC_060931.1 CM039040.1 99.86 True relocation, inconsistency = -8176 61530789 61538670 61553984 61561865 NC_060931.1 CM039040.1 99.85 True local misassembly 61537649 61542902 61561866 61567119 NC_060931.1 CM039040.1 99.78 True local misassembly 61545969 61573452 61567120 61594603 NC_060931.1 CM039040.1 99.91 True indel: stretch of mismatches 61573453 61578672 61594604 61599823 NC_060931.1 CM039040.1 99.79 True indel: stretch of mismatches 61578673 61585826 61599824 61606977 NC_060931.1 CM039040.1 99.61 True relocation, inconsistency = -7154 61578673 61588233 61606978 61616518 NC_060931.1 CM039040.1 99.64 True indel: stretch of mismatches 61588234 61604112 61616519 61632397 NC_060931.1 CM039040.1 99.92 True indel: stretch of mismatches 61604113 61604692 61632398 61632977 NC_060931.1 CM039040.1 99.9 True relocation, inconsistency = 25542 61630235 61641696 61632978 61644439 NC_060931.1 CM039040.1 99.72 True relocation, inconsistency = -21458 61620239 61637288 61644440 61661490 NC_060931.1 CM039040.1 99.84 True relocation, inconsistency = 558859 62197489 62199688 61662832 61665031 NC_060931.1 CM039040.1 99.8 True relocation, inconsistency = -550687 61649002 61660025 61665032 61676055 NC_060931.1 CM039040.1 99.84 True local misassembly 61661542 61670351 61676550 61685359 NC_060931.1 CM039040.1 99.93 True indel: stretch of mismatches 61670352 61673173 61685360 61688181 NC_060931.1 CM039040.1 99.98 True indel: stretch of mismatches 61673174 61675228 61688182 61690236 NC_060931.1 CM039040.1 99.8 True local misassembly 61677273 61686559 61690237 61699523 NC_060931.1 CM039040.1 99.76 True local misassembly 61683494 61685047 61699524 61701077 NC_060931.1 CM039040.1 99.92 True local misassembly 61687092 61693223 61701078 61707209 NC_060931.1 CM039040.1 99.86 True relocation, inconsistency = -31682 61661542 61670351 61707210 61716019 NC_060931.1 CM039040.1 99.92 True local misassembly 61665242 61668063 61716020 61718841 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 8176 61676240 61687522 61718842 61730124 NC_060931.1 CM039040.1 99.88 True relocation, inconsistency = -26572 61660951 61668849 61730125 61738023 NC_060931.1 CM039040.1 99.83 True relocation, inconsistency = -55176 61613674 61616856 61738024 61741206 NC_060931.1 CM039040.1 99.72 True relocation, inconsistency = 88902 61709372 61713537 61744820 61748985 NC_060931.1 CM039040.1 99.84 True relocation, inconsistency = 28238 61741776 61760409 61748986 61767620 NC_060931.1 CM039040.1 99.8 True relocation, inconsistency = 18718 61779128 61788606 61767621 61777099 NC_060931.1 CM039040.1 99.85 True relocation, inconsistency = 13286 61801893 61803936 61777100 61779143 NC_060931.1 CM039040.1 99.73 True relocation, inconsistency = 7154 61816142 61822555 61784195 61790608 NC_060931.1 CM039040.1 99.67 True local misassembly 61824600 61840128 61790609 61806141 NC_060931.1 CM039040.1 99.94 True local misassembly 61844213 61847509 61806142 61809442 NC_060931.1 CM039040.1 99.71 True local misassembly 61845470 61849505 61809443 61813482 NC_060931.1 CM039040.1 99.69 True local misassembly 61850528 61862908 61813483 61825863 NC_060931.1 CM039040.1 99.83 True local misassembly 61860865 61863017 61825864 61828014 NC_060931.1 CM039040.1 99.77 True relocation, inconsistency = -7151 61855867 61863384 61828015 61835530 NC_060931.1 CM039040.1 99.73 True local misassembly 61868495 61879262 61835531 61846299 NC_060931.1 CM039040.1 99.84 True local misassembly 61881302 61888450 61846300 61853453 NC_060931.1 CM039040.1 99.67 True local misassembly 61882322 61886136 61853454 61857271 NC_060931.1 CM039040.1 99.5 True local misassembly 61880013 61891134 61857272 61868403 NC_060931.1 CM039040.1 99.78 True local misassembly 61885005 61885849 61868404 61869248 NC_060931.1 CM039040.1 99.54 True relocation, inconsistency = 16348 61902198 61910930 61869249 61877981 NC_060931.1 CM039040.1 99.84 True local misassembly 61911953 61915679 61877982 61881708 NC_060931.1 CM039040.1 99.94 True indel: stretch of mismatches 61915808 61922360 61881837 61888390 NC_060931.1 CM039040.1 99.98 True local misassembly 61919637 61925259 61888391 61894013 NC_060931.1 CM039040.1 100.0 True indel: stretch of mismatches 61925260 61926417 61894014 61895171 NC_060931.1 CM039040.1 100.0 True relocation, inconsistency = 17367 61943785 61959240 61895172 61910627 NC_060931.1 CM039040.1 99.79 True relocation, inconsistency = -26226 61935951 61948957 61913564 61926570 NC_060931.1 CM039040.1 99.76 True local misassembly 61959111 61966052 61936042 61942983 NC_060931.1 CM039040.1 99.77 True relocation, inconsistency = -24862 61941741 61945516 61943534 61947309 NC_060931.1 CM039040.1 99.66 True relocation, inconsistency = 42571 61992434 62003738 61951656 61962960 NC_060931.1 CM039040.1 99.88 True relocation, inconsistency = -129068 61874691 61875622 61962981 61963912 NC_060931.1 CM039040.1 99.74 True relocation, inconsistency = 116811 61992434 62002020 61963913 61973499 NC_060931.1 CM039040.1 99.87 True local misassembly 61998955 62016694 61973500 61991241 NC_060931.1 CM039040.1 99.92 True local misassembly 62013973 62017597 61991242 61994866 NC_060931.1 CM039040.1 99.84 True local misassembly 62010788 62029106 61994867 62013184 NC_060931.1 CM039040.1 99.81 True relocation, inconsistency = -19754 62009353 62016694 62013185 62020528 NC_060931.1 CM039040.1 99.8 True relocation, inconsistency = 79703 62096398 62102157 62020529 62026286 NC_060931.1 CM039040.1 99.52 True relocation, inconsistency = -87193 62014965 62036617 62026287 62047939 NC_060931.1 CM039040.1 99.92 True relocation, inconsistency = 47683 62084301 62097241 62047940 62060876 NC_060931.1 CM039040.1 99.88 True relocation, inconsistency = -22822 62074420 62075197 62060877 62061654 NC_060931.1 CM039040.1 99.62 True relocation, inconsistency = -39849 62035349 62047160 62061655 62073466 NC_060931.1 CM039040.1 99.7 True relocation, inconsistency = -25888 62021273 62024805 62073467 62076995 NC_060931.1 CM039040.1 99.52 True relocation, inconsistency = 69483 62094289 62105420 62076996 62088127 NC_060931.1 CM039040.1 99.84 True local misassembly 62106443 62110283 62088128 62091968 NC_060931.1 CM039040.1 99.96 True indel: stretch of mismatches 62110284 62118835 62091969 62100520 NC_060931.1 CM039040.1 99.83 True relocation, inconsistency = 8518 62127354 62144138 62100521 62117305 NC_060931.1 CM039040.1 99.91 True local misassembly 62147205 62154918 62117306 62125019 NC_060931.1 CM039040.1 99.96 True indel: stretch of mismatches 62154919 62174896 62125020 62144997 NC_060931.1 CM039040.1 99.9 True relocation, inconsistency = 269803 62445221 62447973 62145519 62148271 NC_060931.1 CM039040.1 99.92 True indel: stretch of mismatches 62447974 62460265 62148272 62160563 NC_060931.1 CM039040.1 99.98 True local misassembly 62463305 62466659 62162581 62165935 NC_060931.1 CM039040.1 99.82 True local misassembly 62471770 62483067 62165936 62177233 NC_060931.1 CM039040.1 99.8 True indel: indel (<= 5bp) 62483072 62484940 62177234 62179102 NC_060931.1 CM039040.1 99.95 True indel: indel (<= 5bp) 62484941 62490513 62179105 62184677 NC_060931.1 CM039040.1 100.0 True local misassembly 62490514 62501254 62188766 62199506 NC_060931.1 CM039040.1 99.98 True relocation, inconsistency = 11244 62516176 62523400 62203184 62210408 NC_060931.1 CM039040.1 99.97 True local misassembly 62531915 62538498 62213471 62220058 NC_060931.1 CM039040.1 99.78 True relocation, inconsistency = 70167 62608666 62627518 62220059 62238913 NC_060931.1 CM039040.1 99.79 True relocation, inconsistency = -52109 62575410 62579043 62238914 62242547 NC_060931.1 CM039040.1 99.83 True relocation, inconsistency = 23498 62602542 62603712 62242548 62243718 NC_060931.1 CM039040.1 99.89 True indel: indel (<= 5bp) 62603713 62608575 62243720 62248582 NC_060931.1 CM039040.1 99.96 True local misassembly 62608576 62612233 62249605 62253262 NC_060931.1 CM039040.1 99.95 True local misassembly 62606104 62629676 62253263 62276837 NC_060931.1 CM039040.1 99.9 True local misassembly 62631719 62635418 62276838 62280537 NC_060931.1 CM039040.1 99.82 True local misassembly 62638483 62651765 62280538 62293818 NC_060931.1 CM039040.1 99.91 True indel: stretch of mismatches 62651766 62669015 62293819 62311068 NC_060931.1 CM039040.1 99.9 True local misassembly 62673228 62700689 62311193 62338654 NC_060931.1 CM039040.1 99.91 True local misassembly 62698646 62703017 62338655 62343026 NC_060931.1 CM039040.1 99.68 True local misassembly 62700976 62711282 62343027 62353333 NC_060931.1 CM039040.1 99.75 True local misassembly 62715641 62720544 62353334 62358235 NC_060931.1 CM039040.1 99.89 True fake: not a misassembly (possible transposable element) 63336552 63340240 62358432 62362122 NC_060931.1 CM039040.1 99.67 True fake: not a misassembly (possible transposable element) 62721366 62736596 62362123 62377349 NC_060931.1 CM039040.1 99.89 True relocation, inconsistency = 16352 62753492 62759684 62377893 62384085 NC_060931.1 CM039040.1 99.71 True relocation, inconsistency = -29638 62751618 62755705 62405657 62409744 NC_060931.1 CM039040.1 99.88 True local misassembly 62761838 62774080 62409745 62421987 NC_060931.1 CM039040.1 99.87 True relocation, inconsistency = 9198 62783279 62785429 62421988 62424138 NC_060931.1 CM039040.1 99.88 True relocation, inconsistency = 50078 62835508 62842306 62424139 62430937 NC_060931.1 CM039040.1 99.62 True relocation, inconsistency = -60298 62782009 62782603 62430938 62431532 NC_060931.1 CM039040.1 99.81 True local misassembly 62785670 62797425 62431533 62443288 NC_060931.1 CM039040.1 99.95 True indel: stretch of mismatches 62797426 62809957 62443289 62455820 NC_060931.1 CM039040.1 99.93 True local misassembly 62808936 62828019 62455821 62474904 NC_060931.1 CM039040.1 99.85 True local misassembly 62830064 62832015 62474905 62476856 NC_060931.1 CM039040.1 99.84 True local misassembly 62826906 62865253 62476857 62515202 NC_060931.1 CM039040.1 99.94 True local misassembly 62863210 62868335 62515203 62520328 NC_060931.1 CM039040.1 99.81 True relocation, inconsistency = 205063 63073640 63084403 62520570 62531333 NC_060931.1 CM039040.1 99.8 True relocation, inconsistency = -10220 63074184 63084403 62531334 62541553 NC_060931.1 CM039040.1 99.86 True relocation, inconsistency = 22484 63106888 63109779 62541554 62544445 NC_060931.1 CM039040.1 99.75 True relocation, inconsistency = -223459 62886321 62897027 62544446 62555152 NC_060931.1 CM039040.1 99.85 True fake: not a misassembly (possible transposable element) 63129685 63131948 62555153 62557416 NC_060931.1 CM039040.1 99.76 True fake: not a misassembly (possible transposable element) 62900314 62904061 62557417 62561164 NC_060931.1 CM039040.1 99.95 True local misassembly 62905084 62908984 62561165 62565065 NC_060931.1 CM039040.1 99.89 True indel: stretch of mismatches 62908985 62917893 62565066 62573974 NC_060931.1 CM039040.1 99.94 True local misassembly 62918916 62925017 62573975 62580076 NC_060931.1 CM039040.1 99.98 True relocation, inconsistency = 244921 63170200 63174226 62580338 62584364 NC_060931.1 CM039040.1 99.7 True indel: stretch of mismatches 63174227 63177074 62584365 62587212 NC_060931.1 CM039040.1 99.69 True relocation, inconsistency = -250031 62927044 62934184 62587213 62594353 NC_060931.1 CM039040.1 99.5 True relocation, inconsistency = 649507 63583692 63598365 62594354 62609027 NC_060931.1 CM039040.1 99.64 True local misassembly 63597344 63618878 62609028 62630564 NC_060931.1 CM039040.1 99.53 True local misassembly 63617468 63625917 62630856 62639305 NC_060931.1 CM039040.1 99.67 True local misassembly 63626260 63626918 62639306 62639964 NC_060931.1 CM039040.1 97.21 True local misassembly 63626919 63630322 62640307 62643710 NC_060931.1 CM039040.1 98.87 True local misassembly 63626919 63634748 62643711 62651540 NC_060931.1 CM039040.1 99.87 True local misassembly 63636449 63654815 62651541 62669907 NC_060931.1 CM039040.1 99.81 True relocation, inconsistency = -11572 63643936 63645637 62670600 62672301 NC_060931.1 CM039040.1 98.83 True local misassembly 63642914 63649362 62672302 62678752 NC_060931.1 CM039040.1 98.34 True local misassembly 63653127 63662837 62678772 62688482 NC_060931.1 CM039040.1 99.56 True relocation, inconsistency = -11063 63651775 63661295 62688483 62698003 NC_060931.1 CM039040.1 99.71 True local misassembly 63663168 63676615 62698004 62711279 NC_060931.1 CM039040.1 98.71 True local misassembly 63678318 63694354 62711280 62727316 NC_060931.1 CM039040.1 99.34 True local misassembly 63696739 64564326 62727317 63594888 NC_060931.1 CM039040.1 99.88 True relocation, inconsistency = -75376 64488994 64581279 63687026 63594889 NC_060931.1 CM039040.1 99.54 True relocation, inconsistency = 77337 64658617 65683355 63687027 64714597 NC_060931.1 CM039040.1 99.5 True local misassembly 65683237 67614802 64715462 66646483 NC_060931.1 CM039040.1 99.76 True translocation 58170590 58171470 66647435 66646555 NC_060939.1 CM039040.1 99.21 True local misassembly 58168997 58169953 66648904 66647948 NC_060939.1 CM039040.1 98.96 True translocation 67614787 69069573 66648930 68104067 NC_060931.1 CM039040.1 99.73 True indel: indel (> 5bp) 69069877 72069243 68104348 71103725 NC_060931.1 CM039040.1 99.73 True indel: indel (<= 5bp) 72069362 74068404 71103842 73106444 NC_060931.1 CM039040.1 99.68 True local misassembly 74072596 74235511 73106469 73269300 NC_060931.1 CM039040.1 99.78 True relocation, inconsistency = 27947 74263459 76030224 73269301 75031701 NC_060931.1 CM039040.1 99.57 True relocation, inconsistency = 247915 76308983 76321965 75044695 75031702 NC_060931.1 CM039040.1 99.36 True relocation, inconsistency = -280152 76041409 76482848 75044696 75485026 NC_060931.1 CM039040.1 99.61 True relocation, inconsistency = 56046 76538895 77790119 75485027 76735970 NC_060931.1 CM039040.1 99.66 True local misassembly 77790495 77793316 76736481 76739302 NC_060931.1 CM039040.1 99.4 True indel: indel (<= 5bp) 77793318 77795538 76739303 76741523 NC_060931.1 CM039040.1 99.41 True indel: indel (<= 5bp) 77795539 77797477 76741526 76743464 NC_060931.1 CM039040.1 99.85 True indel: indel (<= 5bp) 77797478 77799861 76743469 76745852 NC_060931.1 CM039040.1 99.66 True indel: indel (<= 5bp) 77799863 77800460 76745853 76746450 NC_060931.1 CM039040.1 99.83 True indel: stretch of mismatches 77800908 77806334 76746898 76752324 NC_060931.1 CM039040.1 99.67 True indel: indel (<= 5bp) 77806336 77806885 76752325 76752874 NC_060931.1 CM039040.1 99.64 True relocation, inconsistency = 998831 76794335 76799148 76766046 76761231 NC_060931.1 CM039040.1 97.01 True relocation, inconsistency = 1008704 77807853 78118786 76766047 77076932 NC_060931.1 CM039040.1 99.41 True indel: indel (> 5bp) 78118809 78293788 77076968 77252530 NC_060931.1 CM039040.1 99.16 True relocation, inconsistency = -4053350 74240439 74268457 77252531 77280508 NC_060931.1 CM039040.1 98.6 True relocation, inconsistency = 4025385 78293843 84568361 77280509 83554659 NC_060931.1 CM039040.1 99.79 True local misassembly 84568347 92833669 83554964 91817934 NC_060931.1 CM039040.1 99.73 True local misassembly 92832495 94940109 91823268 93932600 NC_060931.1 CM039040.1 99.83 True local misassembly 94945270 99370268 93932937 98355762 NC_060931.1 CM039040.1 99.48 True indel: indel (> 5bp) 99370334 99631180 98355901 98616775 NC_060931.1 CM039040.1 99.66 True indel: indel (> 5bp) 99631280 102252189 98616902 101228003 NC_060931.1 CM039040.1 99.14 True local misassembly 102253091 102297291 101231134 101275342 NC_060931.1 CM039040.1 99.83 True local misassembly 102300457 102690030 101275343 101667226 NC_060931.1 CM039040.1 98.95 True indel: indel (<= 5bp) 102690073 103401494 101667266 102379994 NC_060931.1 CM039040.1 99.56 True local misassembly 103401658 103953540 102383487 102935794 NC_060931.1 CM039040.1 99.61 True relocation, inconsistency = -99139 103854402 103860276 102935795 102941669 NC_060931.1 CM039040.1 99.2 True relocation, inconsistency = 93250 103953527 106138566 102941670 105126953 NC_060931.1 CM039040.1 99.85 True local misassembly 106139297 107047705 105127150 106036013 NC_060931.1 CM039040.1 99.75 True local misassembly 107048269 107223373 106036479 106211251 NC_060931.1 CM039040.1 99.63 True indel: indel (> 5bp) 107223703 110772202 106211517 109762064 NC_060931.1 CM039040.1 99.78 True indel: indel (> 5bp) 110772408 111617364 109762308 110589976 NC_060931.1 CM039040.1 97.78 True indel: indel (> 5bp) 111617368 112025602 110590028 111004798 NC_060931.1 CM039040.1 98.18 True indel: stretch of mismatches 112025603 122758767 111004799 121738697 NC_060931.1 CM039040.1 99.88 True local misassembly 122759289 123554580 121739201 122534048 NC_060931.1 CM039040.1 99.68 True indel: indel (<= 5bp) 123554822 125457889 122534291 124436683 NC_060931.1 CM039040.1 99.84 True local misassembly 125458020 127535196 124437086 126513661 NC_060931.1 CM039040.1 99.82 True indel: indel (> 5bp) 127535251 131121305 126513724 130105079 NC_060931.1 CM039040.1 99.65 True indel: indel (> 5bp) 131121302 132528134 130105110 131511546 NC_060931.1 CM039040.1 99.78 True indel: indel (> 5bp) 132528393 133341417 131511795 132325364 NC_060931.1 CM039040.1 99.67 True local misassembly 133342412 133394001 132326472 132378044 NC_060931.1 CM039040.1 99.76 True indel: indel (> 5bp) 133394365 133510309 132378463 132494430 NC_060931.1 CM039040.1 99.85 True local misassembly 133510355 139282229 132494784 138266417 NC_060931.1 CM039040.1 99.75 True indel: indel (> 5bp) 139282299 141803533 138266473 140787393 NC_060931.1 CM039040.1 99.75 True local misassembly 141804601 142651049 140787533 141634218 NC_060931.1 CM039040.1 99.85 True local misassembly 142652452 143357643 141635543 142340368 NC_060931.1 CM039040.1 99.83 True local misassembly 143358746 143359461 142341982 142342697 NC_060931.1 CM039040.1 97.77 True local misassembly 143360237 144009831 142343652 142993193 NC_060931.1 CM039040.1 99.76 True local misassembly 144009874 144123961 142994661 143108387 NC_060931.1 CM039040.1 99.39 True relocation, inconsistency = -20379 144123014 144141939 143127819 143146749 NC_060931.1 CM039040.1 99.65 True relocation, inconsistency = 10617 144152567 144193354 143146760 143187533 NC_060931.1 CM039040.1 99.29 True indel: indel (> 5bp) 144193461 145478093 143187597 144472026 NC_060931.1 CM039040.1 99.84 True relocation, inconsistency = -10668 145467426 145533567 144539875 144472027 NC_060931.1 CM039040.1 97.3 True relocation, inconsistency = 10705 145544273 145557450 144539876 144553054 NC_060931.1 CM039040.1 99.44 True translocation 132892681 132908592 144568979 144553055 NC_060930.1 CM039040.1 99.43 True translocation 145478093 145557450 144570627 144649957 NC_060931.1 CM039040.1 99.74 True translocation 132892661 132908592 144665892 144649958 NC_060930.1 CM039040.1 99.5 True translocation 145478093 145557450 144667520 144746556 NC_060931.1 CM039040.1 99.14 True translocation 132892661 132908592 144762500 144746557 NC_060930.1 CM039040.1 99.46 True translocation 145478093 145961202 144764128 145246917 NC_060931.1 CM039040.1 99.83 True local misassembly 145961652 149132195 145247710 148418113 NC_060931.1 CM039040.1 99.86 True indel: stretch of mismatches 149132332 149545661 148418250 148834799 NC_060931.1 CM039040.1 98.95 True local misassembly 149546101 149555702 148835329 148844923 NC_060931.1 CM039040.1 99.73 True local misassembly 149559162 149560102 148844924 148845864 NC_060931.1 CM039040.1 99.05 True indel: indel (<= 5bp) 149560561 149561796 148846325 148847560 NC_060931.1 CM039040.1 99.27 True indel: indel (<= 5bp) 149561798 149562418 148847561 148848181 NC_060931.1 CM039040.1 99.52 True indel: indel (<= 5bp) 149562421 149563113 148848182 148848874 NC_060931.1 CM039040.1 99.57 True indel: indel (<= 5bp) 149563114 149565660 148848877 148851423 NC_060931.1 CM039040.1 99.61 True indel: indel (<= 5bp) 149565661 149571336 148851425 148857100 NC_060931.1 CM039040.1 99.82 True indel: indel (> 5bp) 149571376 149575107 148857101 148860832 NC_060931.1 CM039040.1 99.84 True indel: indel (<= 5bp) 149575108 149576187 148860835 148861914 NC_060931.1 CM039040.1 99.91 True indel: indel (<= 5bp) 149576188 149579298 148861917 148865027 NC_060931.1 CM039040.1 99.81 True indel: indel (<= 5bp) 149579300 149580934 148865028 148866662 NC_060931.1 CM039040.1 99.82 True indel: indel (<= 5bp) 149580936 149583030 148866663 148868757 NC_060931.1 CM039040.1 99.9 True local misassembly 149585191 149586612 148868763 148870184 NC_060931.1 CM039040.1 99.79 True indel: indel (<= 5bp) 149586614 149587532 148870185 148871103 NC_060931.1 CM039040.1 98.91 True indel: indel (<= 5bp) 149587717 149589102 148871289 148872674 NC_060931.1 CM039040.1 99.49 True local misassembly 149589809 149591469 148873403 148875063 NC_060931.1 CM039040.1 99.58 True local misassembly 149592032 151782244 148875756 151068988 NC_060931.1 CM039040.1 99.62 True relocation, inconsistency = 67878 151850123 151850922 151068989 151069789 NC_060931.1 CM039040.1 96.85 True fake: not a misassembly (possible transposable element) 151774533 151775191 151069790 151070448 NC_060931.1 CM039040.1 97.12 True fake: not a misassembly (possible transposable element) 151853195 151854013 151072514 151073334 NC_060931.1 CM039040.1 95.75 True relocation, inconsistency = -75932 151778082 155836525 151073335 155130487 NC_060931.1 CM039040.1 99.63 True local misassembly 155836668 156058790 155130718 155354083 NC_060931.1 CM039040.1 99.17 True indel: indel (> 5bp) 156059156 156326982 155354396 155622763 NC_060931.1 CM039040.1 99.6 True indel: indel (<= 5bp) 156327165 156383402 155622948 155679154 NC_060931.1 CM039040.1 99.0 True local misassembly 156384339 156506568 155680347 155801287 NC_060931.1 CM039040.1 98.43 True local misassembly 156507458 156527589 155801741 155821064 NC_060931.1 CM039040.1 95.13 True local misassembly 156528690 156547379 155823011 155842089 NC_060931.1 CM039040.1 95.22 True local misassembly 156547671 156796140 155842090 156091869 NC_060931.1 CM039040.1 99.0 True local misassembly 156796561 158935791 156091894 158230864 NC_060931.1 CM039040.1 99.51 True local misassembly 158938436 159117896 158234821 158414118 NC_060931.1 CM039040.1 99.07 True local misassembly 159118387 159262494 158414371 158559812 NC_060931.1 CM039040.1 97.82 True local misassembly 159263164 159280997 158560429 158578206 NC_060931.1 CM039040.1 98.58 True indel: indel (> 5bp) 159281265 159290427 158578433 158587595 NC_060931.1 CM039040.1 99.95 True local misassembly 159290996 159291768 158588043 158588815 NC_060931.1 CM039040.1 99.87 True local misassembly 159292672 159293626 158589008 158589962 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 159293629 159317310 158589963 158613644 NC_060931.1 CM039040.1 100.0 True indel: indel (> 5bp) 159317362 159340443 158613645 158636726 NC_060931.1 CM039040.1 99.89 True local misassembly 159346725 159347384 158638983 158639642 NC_060931.1 CM039040.1 96.82 True local misassembly 159353772 159354545 158640639 158641412 NC_060931.1 CM039040.1 99.1 True indel: indel (<= 5bp) 159354546 159355824 158641414 158642692 NC_060931.1 CM039040.1 99.61 True local misassembly 159357884 159358572 158643094 158643782 NC_060931.1 CM039040.1 99.42 True indel: indel (<= 5bp) 159358575 159362207 158643783 158647415 NC_060931.1 CM039040.1 99.89 True indel: indel (> 5bp) 159362370 159365429 158647590 158650649 NC_060931.1 CM039040.1 99.77 True local misassembly 159365838 159371571 158650650 158656383 NC_060931.1 CM039040.1 99.46 True indel: indel (> 5bp) 159371572 159373183 158656401 158658012 NC_060931.1 CM039040.1 99.69 True indel: indel (<= 5bp) 159373329 159376440 158658162 158661273 NC_060931.1 CM039040.1 99.81 True indel: indel (> 5bp) 159376447 159378089 158661274 158662916 NC_060931.1 CM039040.1 99.82 True indel: stretch of mismatches 159378336 159379695 158663163 158664522 NC_060931.1 CM039040.1 99.93 True indel: indel (<= 5bp) 159379696 159385613 158664526 158670443 NC_060931.1 CM039040.1 99.88 True indel: indel (<= 5bp) 159385616 159395269 158670444 158680097 NC_060931.1 CM039040.1 99.88 True indel: indel (<= 5bp) 159395413 159410096 158680239 158694922 NC_060931.1 CM039040.1 99.88 True indel: indel (<= 5bp) 159410470 159411407 158695291 158696228 NC_060931.1 CM039040.1 99.89 True indel: indel (<= 5bp) 159411408 159415986 158696230 158700808 NC_060931.1 CM039040.1 99.83 True indel: indel (<= 5bp) 159415987 159417004 158700810 158701827 NC_060931.1 CM039040.1 100.0 True indel: indel (<= 5bp) 159417147 159420077 158701974 158704904 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 159420080 159421264 158704905 158706089 NC_060931.1 CM039040.1 99.83 True indel: indel (> 5bp) 159421265 159425109 158706098 158709942 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 159425111 159433536 158709943 158718368 NC_060931.1 CM039040.1 99.74 True indel: indel (<= 5bp) 159433537 159441139 158718370 158725972 NC_060931.1 CM039040.1 99.87 True indel: indel (> 5bp) 159441400 159442825 158726196 158727621 NC_060931.1 CM039040.1 99.86 True indel: indel (<= 5bp) 159442826 159443678 158727623 158728475 NC_060931.1 CM039040.1 99.65 True local misassembly 159444653 159476735 158728476 158760572 NC_060931.1 CM039040.1 99.71 True local misassembly 159477351 159526228 158762187 158811424 NC_060931.1 CM039040.1 97.89 True indel: indel (> 5bp) 159526458 159536632 158811715 158822007 NC_060931.1 CM039040.1 97.04 True local misassembly 159538807 159539685 158824937 158825815 NC_060931.1 CM039040.1 97.95 True local misassembly 159540972 159541828 158833119 158833975 NC_060931.1 CM039040.1 98.83 True local misassembly 159545611 159804638 158838706 159097857 NC_060931.1 CM039040.1 97.26 True local misassembly 159806242 159894588 159098584 159190108 NC_060931.1 CM039040.1 95.54 True local misassembly 159895656 159897151 159194381 159195876 NC_060931.1 CM039040.1 99.87 True indel: indel (> 5bp) 159897152 159899665 159195885 159198398 NC_060931.1 CM039040.1 99.88 True indel: indel (> 5bp) 159899719 159901675 159198423 159200379 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 159901679 159903926 159200380 159202627 NC_060931.1 CM039040.1 99.82 True indel: indel (<= 5bp) 159903929 159904913 159202628 159203612 NC_060931.1 CM039040.1 99.9 True indel: indel (> 5bp) 159904921 159905497 159203613 159204189 NC_060931.1 CM039040.1 100.0 True indel: indel (<= 5bp) 159905499 159906120 159204190 159204811 NC_060931.1 CM039040.1 100.0 True indel: indel (<= 5bp) 159906123 159915574 159204812 159214263 NC_060931.1 CM039040.1 99.79 True indel: indel (<= 5bp) 159915575 159919695 159214266 159218386 NC_060931.1 CM039040.1 99.85 True indel: indel (<= 5bp) 159919723 159926175 159218418 159224870 NC_060931.1 CM039040.1 99.81 True indel: indel (<= 5bp) 159926176 159928146 159224872 159226842 NC_060931.1 CM039040.1 99.9 True indel: indel (<= 5bp) 159928147 159932745 159226846 159231444 NC_060931.1 CM039040.1 99.85 True indel: indel (<= 5bp) 159932746 159935132 159231446 159233832 NC_060931.1 CM039040.1 99.25 True local misassembly 159935443 159935972 159238159 159238688 NC_060931.1 CM039040.1 100.0 True indel: indel (> 5bp) 159936362 159937008 159239065 159239711 NC_060931.1 CM039040.1 99.07 True indel: stretch of mismatches 159937166 159937957 159239869 159240660 NC_060931.1 CM039040.1 99.49 True indel: indel (<= 5bp) 159937958 159939179 159240662 159241883 NC_060931.1 CM039040.1 99.26 True indel: indel (<= 5bp) 159939393 159940501 159242094 159243202 NC_060931.1 CM039040.1 99.28 True indel: indel (> 5bp) 159940531 159953075 159243281 159255720 NC_060931.1 CM039040.1 97.39 True indel: indel (> 5bp) 159953085 160565235 159255783 159868985 NC_060931.1 CM039040.1 98.65 True CONTIG CM039040.1 159878589 misassembled 172118329 172122177 9164 5316 NC_060930.1 CM039041.1 99.19 True indel: indel (> 5bp) 172117049 172117996 10437 9490 NC_060930.1 CM039041.1 100.0 True indel: indel (<= 5bp) 172116104 172117048 11383 10439 NC_060930.1 CM039041.1 99.37 True indel: indel (<= 5bp) 172112918 172115958 14567 11527 NC_060930.1 CM039041.1 99.74 True indel: indel (<= 5bp) 172110412 172112917 17076 14571 NC_060930.1 CM039041.1 99.44 True indel: indel (> 5bp) 172109583 172110405 17899 17077 NC_060930.1 CM039041.1 99.64 True indel: indel (> 5bp) 172108204 172109472 19291 18023 NC_060930.1 CM039041.1 99.92 True indel: indel (<= 5bp) 172103204 172108203 24292 19293 NC_060930.1 CM039041.1 99.0 True local misassembly 172101269 172102086 26137 25320 NC_060930.1 CM039041.1 98.9 True local misassembly 172100645 172101174 26667 26138 NC_060930.1 CM039041.1 100.0 True local misassembly 172099566 172100329 27653 26890 NC_060930.1 CM039041.1 99.61 True indel: indel (> 5bp) 172096996 172099309 30231 27918 NC_060930.1 CM039041.1 99.96 True indel: indel (<= 5bp) 172094567 172096995 32661 30233 NC_060930.1 CM039041.1 99.84 True indel: indel (<= 5bp) 172089468 172094563 37757 32662 NC_060930.1 CM039041.1 99.74 True local misassembly 172088282 172088948 38603 37937 NC_060930.1 CM039041.1 99.7 True translocation 181896681 181999498 140688 39538 NC_060929.1 CM039041.1 97.7 True translocation 192533 196812 140689 144975 NC_060943.1 CM039041.1 98.82 True translocation 2020 62942 144976 205738 NC_060932.1 CM039041.1 99.49 True local misassembly 63076 131129 205739 273405 NC_060932.1 CM039041.1 98.81 True indel: indel (> 5bp) 131174 390234 273474 532472 NC_060932.1 CM039041.1 99.39 True local misassembly 390320 390974 532782 533436 NC_060932.1 CM039041.1 99.85 True local misassembly 391115 406354 533437 548676 NC_060932.1 CM039041.1 99.85 True indel: indel (<= 5bp) 406355 408053 548678 550376 NC_060932.1 CM039041.1 99.88 True indel: indel (<= 5bp) 408055 414152 550377 556474 NC_060932.1 CM039041.1 99.87 True indel: indel (> 5bp) 414259 418492 556542 560775 NC_060932.1 CM039041.1 99.65 True indel: indel (<= 5bp) 418494 426786 560776 569068 NC_060932.1 CM039041.1 99.93 True local misassembly 427924 431563 570240 573879 NC_060932.1 CM039041.1 100.0 True indel: indel (> 5bp) 431564 436967 573901 579304 NC_060932.1 CM039041.1 99.61 True indel: indel (> 5bp) 436968 439716 579355 582103 NC_060932.1 CM039041.1 99.82 True indel: indel (<= 5bp) 439717 441779 582105 584167 NC_060932.1 CM039041.1 99.66 True local misassembly 441780 448025 589182 595427 NC_060932.1 CM039041.1 99.78 True indel: indel (> 5bp) 448149 466651 595561 614063 NC_060932.1 CM039041.1 99.66 True indel: indel (<= 5bp) 466653 467487 614064 614898 NC_060932.1 CM039041.1 99.76 True local misassembly 468095 471448 616187 619540 NC_060932.1 CM039041.1 99.88 True local misassembly 472122 476292 620004 624174 NC_060932.1 CM039041.1 99.88 True indel: indel (<= 5bp) 476293 477818 624180 625705 NC_060932.1 CM039041.1 99.61 True indel: indel (<= 5bp) 477819 478770 625707 626658 NC_060932.1 CM039041.1 99.26 True indel: indel (<= 5bp) 478772 480136 626659 628023 NC_060932.1 CM039041.1 99.78 True local misassembly 480246 481057 628024 628835 NC_060932.1 CM039041.1 99.38 True indel: indel (<= 5bp) 481059 483121 628836 630898 NC_060932.1 CM039041.1 99.85 True indel: indel (> 5bp) 483143 485504 630899 633260 NC_060932.1 CM039041.1 99.53 True indel: indel (<= 5bp) 485944 487061 633704 634821 NC_060932.1 CM039041.1 99.91 True local misassembly 488193 490011 636117 637935 NC_060932.1 CM039041.1 99.51 True indel: indel (<= 5bp) 490012 490687 637937 638612 NC_060932.1 CM039041.1 99.7 True indel: indel (<= 5bp) 490688 491554 638614 639480 NC_060932.1 CM039041.1 99.88 True local misassembly 492033 823169 640060 972696 NC_060932.1 CM039041.1 98.17 True local misassembly 824539 1035214 972959 1182373 NC_060932.1 CM039041.1 96.75 True local misassembly 1036715 1104138 1183811 1251261 NC_060932.1 CM039041.1 99.3 True indel: stretch of mismatches 1104322 1577444 1251445 1723859 NC_060932.1 CM039041.1 98.93 True indel: indel (> 5bp) 1577565 1667691 1723987 1814236 NC_060932.1 CM039041.1 98.82 True local misassembly 1667749 1733237 1814919 1881279 NC_060932.1 CM039041.1 98.11 True indel: indel (<= 5bp) 1733417 1863992 1881461 2011988 NC_060932.1 CM039041.1 99.52 True local misassembly 1864952 1899351 2012877 2047306 NC_060932.1 CM039041.1 99.12 True indel: indel (> 5bp) 1899425 1970100 2047363 2118360 NC_060932.1 CM039041.1 98.98 True local misassembly 1975213 2027782 2120751 2173371 NC_060932.1 CM039041.1 99.75 True relocation, inconsistency = 197501 2225405 2228657 2176745 2173493 NC_060932.1 CM039041.1 99.02 True local misassembly 2222170 2225404 2182069 2178835 NC_060932.1 CM039041.1 99.13 True indel: indel (> 5bp) 2215722 2222161 2188509 2182070 NC_060932.1 CM039041.1 99.49 True indel: indel (<= 5bp) 2209480 2215267 2194754 2188967 NC_060932.1 CM039041.1 99.67 True indel: indel (> 5bp) 2206338 2209479 2197902 2194761 NC_060932.1 CM039041.1 99.68 True indel: indel (<= 5bp) 2205350 2206336 2198889 2197903 NC_060932.1 CM039041.1 99.29 True local misassembly 2168246 2204981 2235920 2199092 NC_060932.1 CM039041.1 98.62 True translocation 56750694 56751254 2236482 2235921 NC_060934.1 CM039041.1 95.73 True translocation 2111863 2172697 2307773 2247078 NC_060932.1 CM039041.1 98.48 True relocation, inconsistency = -25617 2147081 2228704 2307774 2390589 NC_060932.1 CM039041.1 96.02 True indel: indel (<= 5bp) 2228765 2623216 2390652 2784946 NC_060932.1 CM039041.1 99.75 True indel: indel (> 5bp) 2623386 3549714 2785076 3711569 NC_060932.1 CM039041.1 99.62 True local misassembly 3550130 5866584 3711872 6030120 NC_060932.1 CM039041.1 99.48 True local misassembly 5867871 6259722 6031408 6422323 NC_060932.1 CM039041.1 99.4 True indel: indel (> 5bp) 6259940 6776880 6422589 6939489 NC_060932.1 CM039041.1 99.52 True relocation, inconsistency = -19092 6757789 6949052 6939490 7130835 NC_060932.1 CM039041.1 99.46 True relocation, inconsistency = 5367690 12316743 12317265 7130836 7131358 NC_060932.1 CM039041.1 95.02 True indel: indel (<= 5bp) 12317371 12322202 7131465 7136316 NC_060932.1 CM039041.1 95.08 True indel: indel (> 5bp) 12322546 12344124 7136654 7158354 NC_060932.1 CM039041.1 96.68 True indel: indel (<= 5bp) 12344445 12399158 7158677 7213360 NC_060932.1 CM039041.1 98.18 True relocation, inconsistency = -5385581 7013578 7265908 7213361 7465669 NC_060932.1 CM039041.1 99.63 True relocation, inconsistency = 61213 7327122 7718961 7465670 7852908 NC_060932.1 CM039041.1 98.09 True local misassembly 7725069 11711447 7852909 11839788 NC_060932.1 CM039041.1 99.81 True relocation, inconsistency = 139507 11850955 12415308 11839789 12403598 NC_060932.1 CM039041.1 99.61 True relocation, inconsistency = 45889 12461198 12868169 12403599 12807896 NC_060932.1 CM039041.1 99.2 True local misassembly 12874301 17467068 12807897 17400507 NC_060932.1 CM039041.1 99.69 True indel: indel (> 5bp) 17467048 26113172 17400508 26041478 NC_060932.1 CM039041.1 99.73 True indel: indel (> 5bp) 26113201 26280190 26041525 26208515 NC_060932.1 CM039041.1 99.82 True local misassembly 26280294 26520687 26208734 26449258 NC_060932.1 CM039041.1 99.55 True indel: indel (> 5bp) 26520707 26832758 26449269 26761282 NC_060932.1 CM039041.1 99.74 True local misassembly 26833043 37781580 26761836 37709823 NC_060932.1 CM039041.1 99.85 True local misassembly 37781758 41699028 37711474 41633394 NC_060932.1 CM039041.1 99.64 True indel: indel (<= 5bp) 41699125 43275084 41633495 43211122 NC_060932.1 CM039041.1 99.67 True local misassembly 43274285 43519552 43211123 43451164 NC_060932.1 CM039041.1 97.69 True indel: indel (> 5bp) 43519577 43933387 43451259 43865488 NC_060932.1 CM039041.1 99.75 True local misassembly 43937347 44228553 43865489 44156646 NC_060932.1 CM039041.1 99.84 True relocation, inconsistency = 2107386 46335940 46336948 44156647 44157654 NC_060932.1 CM039041.1 99.4 True relocation, inconsistency = -2108408 44228541 44336657 44157655 44264915 NC_060932.1 CM039041.1 97.42 True relocation, inconsistency = -84928 44251730 44336657 44264916 44349011 NC_060932.1 CM039041.1 97.33 True relocation, inconsistency = -73716 44262942 44305478 44349012 44391562 NC_060932.1 CM039041.1 96.44 True relocation, inconsistency = -24862 44281422 44300030 44392368 44410979 NC_060932.1 CM039041.1 97.57 True relocation, inconsistency = -56511 44243520 44330347 44410980 44496283 NC_060932.1 CM039041.1 96.45 True relocation, inconsistency = -85947 44244401 44337603 44496284 44589309 NC_060932.1 CM039041.1 96.49 True relocation, inconsistency = 1780310 46117914 46119499 44589310 44590895 NC_060932.1 CM039041.1 99.05 True relocation, inconsistency = -1728328 44391172 44398024 44590896 44597751 NC_060932.1 CM039041.1 99.12 True relocation, inconsistency = 204427 44602452 44606998 44597752 44602297 NC_060932.1 CM039041.1 98.94 True relocation, inconsistency = -243830 44363194 44366380 44602323 44605509 NC_060932.1 CM039041.1 98.82 True relocation, inconsistency = 24791 44391172 44397461 44605510 44611801 NC_060932.1 CM039041.1 99.1 True relocation, inconsistency = 1719489 46116951 46123993 44611802 44619064 NC_060932.1 CM039041.1 96.52 True relocation, inconsistency = -1529456 44594538 44596840 44619065 44621368 NC_060932.1 CM039041.1 99.24 True relocation, inconsistency = -282735 44314211 44315704 44621474 44622967 NC_060932.1 CM039041.1 98.26 True indel: indel (<= 5bp) 44316145 44316766 44623406 44624027 NC_060932.1 CM039041.1 98.11 True relocation, inconsistency = 22423 44339190 44346263 44624028 44631101 NC_060932.1 CM039041.1 98.74 True relocation, inconsistency = 327549 44673813 44674430 44631102 44631720 NC_060932.1 CM039041.1 99.23 True relocation, inconsistency = -360325 44314211 44315704 44631826 44633319 NC_060932.1 CM039041.1 98.26 True indel: indel (<= 5bp) 44316145 44317573 44633758 44635186 NC_060932.1 CM039041.1 98.11 True indel: indel (<= 5bp) 44317575 44319013 44635187 44636625 NC_060932.1 CM039041.1 97.92 True local misassembly 44319711 44320880 44636812 44637981 NC_060932.1 CM039041.1 98.03 True local misassembly 44314129 44319844 44638191 44643904 NC_060932.1 CM039041.1 97.83 True relocation, inconsistency = -13761 44306654 44307670 44644475 44645491 NC_060932.1 CM039041.1 97.94 True indel: indel (<= 5bp) 44307671 44308228 44645493 44646050 NC_060932.1 CM039041.1 98.03 True indel: indel (<= 5bp) 44308230 44310097 44646051 44647918 NC_060932.1 CM039041.1 97.97 True indel: indel (<= 5bp) 44310099 44311192 44647919 44649012 NC_060932.1 CM039041.1 97.85 True relocation, inconsistency = 1697718 46008911 46014780 44649013 44654883 NC_060932.1 CM039041.1 99.08 True relocation, inconsistency = -297380 45717401 45718691 44654884 44656174 NC_060932.1 CM039041.1 98.94 True relocation, inconsistency = -1374019 44344673 44350863 44656175 44662367 NC_060932.1 CM039041.1 99.31 True relocation, inconsistency = 325677 44676541 44678327 44662368 44664154 NC_060932.1 CM039041.1 99.24 True relocation, inconsistency = -176936 44501392 44508810 44664155 44671572 NC_060932.1 CM039041.1 99.14 True relocation, inconsistency = 1752902 46261750 46263641 44671610 44673501 NC_060932.1 CM039041.1 97.98 True relocation, inconsistency = -1645739 44617903 44624745 44673502 44680343 NC_060932.1 CM039041.1 99.2 True relocation, inconsistency = 1596482 46221633 46223362 44680749 44682478 NC_060932.1 CM039041.1 98.5 True relocation, inconsistency = -38735 46189560 46195332 44687411 44693180 NC_060932.1 CM039041.1 98.11 True relocation, inconsistency = -1929335 44266568 44270415 44693751 44697597 NC_060932.1 CM039041.1 97.74 True relocation, inconsistency = 1992687 46263618 46265510 44698113 44700004 NC_060932.1 CM039041.1 97.52 True relocation, inconsistency = -1647608 44617903 44622449 44700005 44704550 NC_060932.1 CM039041.1 99.2 True local misassembly 44617350 44624745 44704551 44711945 NC_060932.1 CM039041.1 99.19 True local misassembly 44617901 44619080 44712069 44713248 NC_060932.1 CM039041.1 98.9 True indel: indel (<= 5bp) 44619082 44621630 44713249 44715797 NC_060932.1 CM039041.1 99.57 True indel: indel (<= 5bp) 44621632 44624142 44715798 44718308 NC_060932.1 CM039041.1 99.44 True relocation, inconsistency = 1611259 46235644 46239466 44718551 44722373 NC_060932.1 CM039041.1 98.14 True relocation, inconsistency = -19193 46220284 46221351 44722384 44723451 NC_060932.1 CM039041.1 98.51 True fake: not a misassembly (possible transposable element) 44617903 44623307 44723452 44728854 NC_060932.1 CM039041.1 99.5 True fake: not a misassembly (possible transposable element) 46230722 46234043 44739097 44742417 NC_060932.1 CM039041.1 98.37 True relocation, inconsistency = -1570033 44677886 44683947 44756293 44762353 NC_060932.1 CM039041.1 99.32 True relocation, inconsistency = 1635253 46319201 46321716 44762354 44764868 NC_060932.1 CM039041.1 98.12 True relocation, inconsistency = -608329 45714714 45718351 44766195 44769832 NC_060932.1 CM039041.1 98.93 True local misassembly 45714714 45718319 44770612 44774217 NC_060932.1 CM039041.1 98.9 True relocation, inconsistency = 526616 46244936 46248822 44774218 44778102 NC_060932.1 CM039041.1 98.02 True relocation, inconsistency = -1744925 44503898 44509505 44778103 44783710 NC_060932.1 CM039041.1 99.18 True relocation, inconsistency = 1695664 46205170 46206379 44783711 44784920 NC_060932.1 CM039041.1 97.61 True relocation, inconsistency = -1619929 44586451 44590416 44784921 44788887 NC_060932.1 CM039041.1 99.47 True local misassembly 44588455 44589065 44789637 44790246 NC_060932.1 CM039041.1 99.69 True relocation, inconsistency = 1613641 46202707 46211504 44790247 44799040 NC_060932.1 CM039041.1 97.98 True relocation, inconsistency = -1797837 44415815 44419706 44801188 44805077 NC_060932.1 CM039041.1 99.2 True relocation, inconsistency = 1892474 46314265 46318685 44807162 44811580 NC_060932.1 CM039041.1 98.01 True relocation, inconsistency = -1817289 44501397 44508880 44811581 44819058 NC_060932.1 CM039041.1 99.1 True relocation, inconsistency = -119856 44389025 44398024 44819059 44828060 NC_060932.1 CM039041.1 99.21 True relocation, inconsistency = 219886 44617911 44624740 44828061 44834891 NC_060932.1 CM039041.1 99.23 True relocation, inconsistency = -272551 44352190 44358072 44834892 44840776 NC_060932.1 CM039041.1 99.18 True relocation, inconsistency = 316839 44674912 44683383 44840777 44849247 NC_060932.1 CM039041.1 99.34 True relocation, inconsistency = -332132 44351252 44361845 44849248 44859846 NC_060932.1 CM039041.1 99.16 True relocation, inconsistency = 28534 44390380 44394936 44859847 44864404 NC_060932.1 CM039041.1 99.17 True local misassembly 44389839 44398024 44864405 44872593 NC_060932.1 CM039041.1 99.24 True local misassembly 44392929 44394927 44872594 44874592 NC_060932.1 CM039041.1 99.4 True local misassembly 44389830 44394927 44874593 44879689 NC_060932.1 CM039041.1 99.37 True local misassembly 44389830 44398024 44879690 44887886 NC_060932.1 CM039041.1 99.37 True local misassembly 44392929 44394927 44887887 44889884 NC_060932.1 CM039041.1 99.37 True local misassembly 44389830 44398024 44889885 44898081 NC_060932.1 CM039041.1 99.41 True local misassembly 44392929 44394927 44898082 44900080 NC_060932.1 CM039041.1 99.43 True local misassembly 44389830 44394927 44900081 44905177 NC_060932.1 CM039041.1 99.41 True local misassembly 44389830 44398024 44905178 44913374 NC_060932.1 CM039041.1 99.44 True local misassembly 44392929 44398024 44913375 44918472 NC_060932.1 CM039041.1 99.35 True relocation, inconsistency = -9001 44389024 44391549 44918473 44920998 NC_060932.1 CM039041.1 99.45 True indel: indel (<= 5bp) 44391550 44394927 44921000 44924377 NC_060932.1 CM039041.1 99.38 True local misassembly 44389830 44398024 44924378 44932576 NC_060932.1 CM039041.1 99.22 True relocation, inconsistency = -7645 44390380 44398024 44932577 44940224 NC_060932.1 CM039041.1 99.34 True relocation, inconsistency = -133349 44264699 44266678 44940248 44942226 NC_060932.1 CM039041.1 98.18 True relocation, inconsistency = 82042 44350230 44357555 44943736 44951062 NC_060932.1 CM039041.1 99.15 True relocation, inconsistency = 32274 44389830 44398024 44951063 44959259 NC_060932.1 CM039041.1 99.28 True local misassembly 44392929 44394927 44959260 44961258 NC_060932.1 CM039041.1 99.26 True local misassembly 44389830 44398024 44961259 44969455 NC_060932.1 CM039041.1 99.23 True local misassembly 44392929 44394927 44969456 44971454 NC_060932.1 CM039041.1 99.3 True local misassembly 44389830 44398024 44971455 44979651 NC_060932.1 CM039041.1 99.38 True local misassembly 44392929 44394927 44979652 44981649 NC_060932.1 CM039041.1 99.29 True local misassembly 44389830 44398024 44981650 44989847 NC_060932.1 CM039041.1 99.41 True local misassembly 44392929 44394927 44989848 44991847 NC_060932.1 CM039041.1 99.38 True local misassembly 44389830 44399217 44991848 45001238 NC_060932.1 CM039041.1 99.3 True relocation, inconsistency = -8838 44390380 44394927 45001239 45005786 NC_060932.1 CM039041.1 99.22 True local misassembly 44389830 44398024 45005787 45013983 NC_060932.1 CM039041.1 99.28 True local misassembly 44392929 44395467 45013984 45016522 NC_060932.1 CM039041.1 99.35 True relocation, inconsistency = 201876 44597344 44604450 45016523 45023629 NC_060932.1 CM039041.1 99.27 True relocation, inconsistency = -214621 44389830 44394927 45023630 45028727 NC_060932.1 CM039041.1 99.23 True local misassembly 44389830 44398024 45028728 45036924 NC_060932.1 CM039041.1 99.28 True local misassembly 44395478 44396268 45036925 45037716 NC_060932.1 CM039041.1 99.26 True relocation, inconsistency = -45017 44351252 44358104 45037717 45044571 NC_060932.1 CM039041.1 99.3 True local misassembly 44353009 44356348 45044572 45047912 NC_060932.1 CM039041.1 99.29 True local misassembly 44351252 44358094 45047913 45054757 NC_060932.1 CM039041.1 99.2 True relocation, inconsistency = 239249 44597344 44604604 45054758 45062018 NC_060932.1 CM039041.1 99.3 True relocation, inconsistency = -249443 44355162 44356391 45062019 45063249 NC_060932.1 CM039041.1 99.29 True relocation, inconsistency = 321936 44678328 44683685 45063250 45068606 NC_060932.1 CM039041.1 99.46 True relocation, inconsistency = -331619 44352067 44356628 45068607 45073169 NC_060932.1 CM039041.1 99.28 True relocation, inconsistency = 35336 44391965 44394927 45073170 45076132 NC_060932.1 CM039041.1 99.18 True local misassembly 44389830 44396570 45076133 45082875 NC_060932.1 CM039041.1 99.39 True relocation, inconsistency = -7133 44389830 44392378 45083268 45085816 NC_060932.1 CM039041.1 99.39 True local misassembly 44389830 44394927 45085817 45090915 NC_060932.1 CM039041.1 99.32 True local misassembly 44389830 44399217 45090916 45100306 NC_060932.1 CM039041.1 99.29 True local misassembly 44392929 44397475 45100307 45104854 NC_060932.1 CM039041.1 99.34 True relocation, inconsistency = -7646 44389830 44398024 45104855 45113051 NC_060932.1 CM039041.1 99.33 True relocation, inconsistency = -7645 44390380 44397475 45113052 45120148 NC_060932.1 CM039041.1 99.4 True relocation, inconsistency = -7646 44389830 44398024 45120149 45128345 NC_060932.1 CM039041.1 99.4 True relocation, inconsistency = -7645 44390380 44398024 45128346 45135992 NC_060932.1 CM039041.1 99.29 True relocation, inconsistency = -7645 44390380 44396972 45135993 45142586 NC_060932.1 CM039041.1 99.31 True relocation, inconsistency = -7304 44389830 44398024 45142748 45150944 NC_060932.1 CM039041.1 99.29 True local misassembly 44395478 44397992 45150945 45153461 NC_060932.1 CM039041.1 99.28 True relocation, inconsistency = 276919 44674912 44683947 45153462 45162495 NC_060932.1 CM039041.1 99.21 True local misassembly 44685303 44689920 45162496 45167113 NC_060932.1 CM039041.1 99.33 True relocation, scaffold gap is present, inconsistency = -299758 44390363 44394927 45167314 45171880 NC_060932.1 CM039041.1 99.35 True local misassembly 44389830 44398024 45171881 45180080 NC_060932.1 CM039041.1 99.32 True local misassembly 44392929 44394927 45180081 45182080 NC_060932.1 CM039041.1 99.32 True local misassembly 44389830 44398671 45182081 45190927 NC_060932.1 CM039041.1 99.32 True local misassembly 44393063 44394441 45190928 45192306 NC_060932.1 CM039041.1 99.67 True indel: indel (<= 5bp) 44394442 44395248 45192308 45193114 NC_060932.1 CM039041.1 99.08 True local misassembly 44390151 44397475 45193115 45200441 NC_060932.1 CM039041.1 99.34 True relocation, inconsistency = -7646 44389830 44398024 45200442 45208639 NC_060932.1 CM039041.1 99.24 True local misassembly 44392929 44394927 45208640 45210638 NC_060932.1 CM039041.1 99.28 True local misassembly 44389830 44398024 45210639 45218835 NC_060932.1 CM039041.1 99.33 True local misassembly 44395478 44397475 45218836 45220834 NC_060932.1 CM039041.1 99.33 True relocation, inconsistency = -7646 44389830 44392378 45220835 45223383 NC_060932.1 CM039041.1 99.28 True local misassembly 44389830 44399217 45223384 45232773 NC_060932.1 CM039041.1 99.27 True relocation, inconsistency = -8838 44390380 44394927 45232774 45237321 NC_060932.1 CM039041.1 99.35 True local misassembly 44389830 44397448 45237322 45244942 NC_060932.1 CM039041.1 99.28 True relocation, inconsistency = 285922 44683371 44692951 45244943 45254525 NC_060932.1 CM039041.1 99.31 True relocation, inconsistency = -301217 44391735 44394927 45254526 45257719 NC_060932.1 CM039041.1 99.16 True local misassembly 44389830 44398024 45257720 45265919 NC_060932.1 CM039041.1 99.11 True local misassembly 44392929 44394927 45265920 45267919 NC_060932.1 CM039041.1 99.13 True local misassembly 44389830 44394927 45267920 45273018 NC_060932.1 CM039041.1 99.27 True local misassembly 44389830 44398024 45273019 45281217 NC_060932.1 CM039041.1 99.22 True local misassembly 44392929 44394927 45281218 45283217 NC_060932.1 CM039041.1 99.21 True local misassembly 44389830 44397475 45283218 45290866 NC_060932.1 CM039041.1 99.21 True relocation, inconsistency = -7646 44389830 44398024 45290867 45299066 NC_060932.1 CM039041.1 99.12 True local misassembly 44392929 44394927 45299067 45301066 NC_060932.1 CM039041.1 99.11 True local misassembly 44389830 44398024 45301067 45309266 NC_060932.1 CM039041.1 99.12 True local misassembly 44392929 44394927 45309267 45311266 NC_060932.1 CM039041.1 99.15 True local misassembly 44389830 44398024 45311267 45319466 NC_060932.1 CM039041.1 99.17 True local misassembly 44392929 44394927 45319467 45321466 NC_060932.1 CM039041.1 99.17 True local misassembly 44389830 44398024 45321467 45329666 NC_060932.1 CM039041.1 99.13 True local misassembly 44392929 44394927 45329667 45331665 NC_060932.1 CM039041.1 99.17 True local misassembly 44389830 44398024 45331666 45339865 NC_060932.1 CM039041.1 99.18 True local misassembly 44392929 44394927 45339866 45341864 NC_060932.1 CM039041.1 99.26 True local misassembly 44389830 44398024 45341865 45350063 NC_060932.1 CM039041.1 99.22 True local misassembly 44392929 44394927 45350064 45352063 NC_060932.1 CM039041.1 99.2 True local misassembly 44389830 44398024 45352064 45360263 NC_060932.1 CM039041.1 99.16 True local misassembly 44392929 44394927 45360264 45362263 NC_060932.1 CM039041.1 99.18 True local misassembly 44389830 44394927 45362264 45367362 NC_060932.1 CM039041.1 99.2 True local misassembly 44389830 44398024 45367363 45375562 NC_060932.1 CM039041.1 99.16 True relocation, inconsistency = -7645 44390380 44394927 45375563 45380111 NC_060932.1 CM039041.1 99.17 True local misassembly 44389830 44398024 45380112 45388310 NC_060932.1 CM039041.1 99.29 True relocation, inconsistency = -45016 44353009 44358072 45388311 45393377 NC_060932.1 CM039041.1 99.16 True relocation, inconsistency = 239249 44597322 44604659 45393378 45400716 NC_060932.1 CM039041.1 99.29 True relocation, inconsistency = -7647 44597322 44604659 45401026 45408364 NC_060932.1 CM039041.1 99.26 True relocation, inconsistency = 397681 45002341 45004982 45408365 45411007 NC_060932.1 CM039041.1 99.06 True relocation, inconsistency = -387320 44617679 44626901 45411024 45420245 NC_060932.1 CM039041.1 99.32 True relocation, inconsistency = -7649 44619253 44626901 45420246 45427894 NC_060932.1 CM039041.1 99.36 True relocation, inconsistency = 1339692 45966594 45967800 45427895 45429102 NC_060932.1 CM039041.1 99.0 True relocation, inconsistency = -949501 45018871 45024505 45429674 45435309 NC_060932.1 CM039041.1 99.13 True relocation, inconsistency = -25977 44999348 45004982 45436129 45441764 NC_060932.1 CM039041.1 99.18 True relocation, inconsistency = -666160 44341045 44348074 45443987 45451018 NC_060932.1 CM039041.1 98.85 True local misassembly 44353009 44358104 45451019 45456118 NC_060932.1 CM039041.1 99.08 True relocation, inconsistency = 1803128 46163225 46169009 45458111 45463895 NC_060932.1 CM039041.1 98.44 True relocation, inconsistency = -1543997 44625013 44626945 45463896 45465827 NC_060932.1 CM039041.1 99.09 True relocation, inconsistency = 1533123 46163225 46169009 45468984 45474768 NC_060932.1 CM039041.1 98.44 True relocation, inconsistency = 12564 46181963 46183289 45475158 45476484 NC_060932.1 CM039041.1 97.89 True indel: indel (<= 5bp) 46183290 46184260 45476486 45477456 NC_060932.1 CM039041.1 98.15 True local misassembly 46184261 46185815 45477793 45479347 NC_060932.1 CM039041.1 98.31 True relocation, inconsistency = -72928 46112888 46117514 45479348 45483972 NC_060932.1 CM039041.1 98.81 True relocation, inconsistency = -1834216 44283299 44283916 45483973 45484589 NC_060932.1 CM039041.1 97.59 True relocation, inconsistency = 316765 44600682 44602437 45484590 45486344 NC_060932.1 CM039041.1 99.09 True relocation, inconsistency = 36343 44639412 44643433 45486976 45490996 NC_060932.1 CM039041.1 99.1 True relocation, inconsistency = -293272 44350162 44355525 45490997 45496360 NC_060932.1 CM039041.1 99.17 True relocation, inconsistency = 33466 44388992 44398024 45496361 45505398 NC_060932.1 CM039041.1 98.98 True local misassembly 44392929 44398024 45505399 45510498 NC_060932.1 CM039041.1 99.05 True relocation, inconsistency = -127743 44270305 44272596 45510522 45512813 NC_060932.1 CM039041.1 97.72 True relocation, inconsistency = 116536 44389133 44398024 45512814 45521709 NC_060932.1 CM039041.1 99.18 True local misassembly 44395478 44398024 45521710 45524259 NC_060932.1 CM039041.1 98.98 True relocation, inconsistency = 1781547 46179572 46180153 45524260 45524841 NC_060932.1 CM039041.1 96.58 True indel: indel (<= 5bp) 46180154 46180740 45524843 45525429 NC_060932.1 CM039041.1 98.81 True indel: indel (<= 5bp) 46180741 46183289 45525431 45527979 NC_060932.1 CM039041.1 98.35 True indel: indel (<= 5bp) 46183290 46184260 45527981 45528951 NC_060932.1 CM039041.1 97.94 True local misassembly 46184261 46185116 45529288 45530143 NC_060932.1 CM039041.1 98.36 True relocation, inconsistency = 19198 46204600 46212810 45530429 45538631 NC_060932.1 CM039041.1 97.32 True relocation, inconsistency = -1599370 44613441 44622699 45538632 45547889 NC_060932.1 CM039041.1 99.13 True relocation, inconsistency = -356123 44266577 44267654 45547890 45548967 NC_060932.1 CM039041.1 97.98 True relocation, inconsistency = 1910822 46179792 46185935 45550283 45556423 NC_060932.1 CM039041.1 97.81 True relocation, inconsistency = -1798701 44387235 44397478 45556424 45566668 NC_060932.1 CM039041.1 98.76 True relocation, inconsistency = 1786643 46184122 46187845 45566669 45570394 NC_060932.1 CM039041.1 98.01 True local misassembly 46188029 46208413 45571088 45591463 NC_060932.1 CM039041.1 97.49 True relocation, inconsistency = -26841 46181573 46182087 45591464 45591978 NC_060932.1 CM039041.1 97.79 True local misassembly 46177671 46186139 45591979 45600443 NC_060932.1 CM039041.1 97.95 True relocation, inconsistency = -8153 46177987 46182339 45600444 45604795 NC_060932.1 CM039041.1 97.96 True local misassembly 46186077 46199336 45604796 45618051 NC_060932.1 CM039041.1 97.78 True relocation, inconsistency = 9344 46208681 46218618 45618052 45627986 NC_060932.1 CM039041.1 97.73 True relocation, inconsistency = -1824695 44393924 44395467 45627987 45629530 NC_060932.1 CM039041.1 98.42 True relocation, inconsistency = 1780357 46175825 46185405 45629531 45639104 NC_060932.1 CM039041.1 97.8 True local misassembly 46180988 46182142 45639105 45640259 NC_060932.1 CM039041.1 97.96 True relocation, inconsistency = -1930524 44251619 44266277 45640260 45654915 NC_060932.1 CM039041.1 97.5 True relocation, inconsistency = 1907424 46173936 46179561 45655150 45660775 NC_060932.1 CM039041.1 98.05 True local misassembly 46182110 46187713 45660776 45666379 NC_060932.1 CM039041.1 97.8 True relocation, inconsistency = -13756 46173958 46187845 45666380 45680267 NC_060932.1 CM039041.1 98.03 True local misassembly 46181561 46182087 45680268 45680794 NC_060932.1 CM039041.1 98.0 True local misassembly 46177671 46185816 45680795 45688936 NC_060932.1 CM039041.1 97.93 True relocation, inconsistency = -1930525 44255292 44268286 45688937 45701927 NC_060932.1 CM039041.1 97.46 True relocation, inconsistency = -22427 44245860 44249694 45701928 45705758 NC_060932.1 CM039041.1 97.74 True relocation, inconsistency = 1932393 46182088 46196616 45705759 45720282 NC_060932.1 CM039041.1 97.68 True relocation, inconsistency = -1947342 44249275 44259225 45720283 45730229 NC_060932.1 CM039041.1 97.49 True relocation, inconsistency = 1951079 46210305 46215910 45730230 45735835 NC_060932.1 CM039041.1 97.84 True local misassembly 46210305 46218654 45735836 45744182 NC_060932.1 CM039041.1 97.62 True relocation, inconsistency = 60979 46279634 46323585 45744183 45788106 NC_060932.1 CM039041.1 97.48 True relocation, inconsistency = -1931204 44392382 44395247 45788107 45790973 NC_060932.1 CM039041.1 98.92 True local misassembly 44390150 44398024 45790974 45798851 NC_060932.1 CM039041.1 99.23 True local misassembly 44392929 44394927 45798852 45800850 NC_060932.1 CM039041.1 99.35 True local misassembly 44389830 44397992 45800851 45809015 NC_060932.1 CM039041.1 99.38 True relocation, inconsistency = -9001 44388992 44392897 45809016 45812921 NC_060932.1 CM039041.1 99.35 True relocation, inconsistency = 1786643 46179541 46193463 45812922 45826844 NC_060932.1 CM039041.1 97.83 True relocation, inconsistency = -1803631 44389833 44396268 45826845 45833281 NC_060932.1 CM039041.1 99.38 True relocation, inconsistency = -48757 44347512 44361845 45833282 45847620 NC_060932.1 CM039041.1 99.25 True relocation, inconsistency = 31083 44392929 44394927 45847621 45849618 NC_060932.1 CM039041.1 99.35 True local misassembly 44389830 44398024 45849619 45857815 NC_060932.1 CM039041.1 99.35 True local misassembly 44392929 44394927 45857816 45859814 NC_060932.1 CM039041.1 99.38 True local misassembly 44389830 44398024 45859815 45868011 NC_060932.1 CM039041.1 99.38 True local misassembly 44392929 44394927 45868012 45870009 NC_060932.1 CM039041.1 99.41 True local misassembly 44389830 44398024 45870010 45878206 NC_060932.1 CM039041.1 99.45 True local misassembly 44392929 44398024 45878207 45883304 NC_060932.1 CM039041.1 99.33 True relocation, inconsistency = -9001 44389024 44391549 45883305 45885830 NC_060932.1 CM039041.1 99.45 True indel: indel (<= 5bp) 44391550 44394927 45885832 45889209 NC_060932.1 CM039041.1 99.33 True local misassembly 44389830 44398024 45889210 45897408 NC_060932.1 CM039041.1 99.23 True relocation, inconsistency = -7645 44390380 44397475 45897409 45904506 NC_060932.1 CM039041.1 99.33 True relocation, inconsistency = -7646 44389830 44398024 45904507 45912706 NC_060932.1 CM039041.1 99.18 True relocation, inconsistency = -7645 44390380 44398024 45912707 45920353 NC_060932.1 CM039041.1 99.41 True relocation, inconsistency = -48758 44350230 44357555 45921317 45928643 NC_060932.1 CM039041.1 99.14 True relocation, inconsistency = 32274 44389830 44398024 45928644 45936840 NC_060932.1 CM039041.1 99.28 True local misassembly 44392929 44394927 45936841 45938839 NC_060932.1 CM039041.1 99.28 True local misassembly 44389830 44398024 45938840 45947036 NC_060932.1 CM039041.1 99.23 True local misassembly 44392929 44394927 45947037 45949035 NC_060932.1 CM039041.1 99.3 True local misassembly 44389830 44398024 45949036 45957232 NC_060932.1 CM039041.1 99.35 True local misassembly 44392929 44394927 45957233 45959231 NC_060932.1 CM039041.1 99.29 True local misassembly 44389830 44398024 45959232 45967429 NC_060932.1 CM039041.1 99.41 True local misassembly 44392929 44394927 45967430 45969429 NC_060932.1 CM039041.1 99.41 True local misassembly 44389830 44399217 45969430 45978820 NC_060932.1 CM039041.1 99.34 True relocation, inconsistency = -8838 44390380 44397475 45978821 45985917 NC_060932.1 CM039041.1 99.29 True relocation, inconsistency = -7646 44389830 44398024 45985918 45994114 NC_060932.1 CM039041.1 99.23 True local misassembly 44392929 44394927 45994115 45996113 NC_060932.1 CM039041.1 99.27 True local misassembly 44389830 44394927 45996114 46001211 NC_060932.1 CM039041.1 99.24 True local misassembly 44389830 44398024 46001212 46009408 NC_060932.1 CM039041.1 99.23 True local misassembly 44395478 44398024 46009409 46011957 NC_060932.1 CM039041.1 99.24 True relocation, inconsistency = 199329 44597459 44598523 46012063 46013127 NC_060932.1 CM039041.1 99.44 True indel: indel (<= 5bp) 44598524 44604604 46013129 46019209 NC_060932.1 CM039041.1 99.24 True relocation, inconsistency = 1574572 46179540 46198904 46019573 46038929 NC_060932.1 CM039041.1 97.86 True relocation, inconsistency = -16817 46182088 46211566 46038930 46068394 NC_060932.1 CM039041.1 97.73 True relocation, inconsistency = -29896 46182270 46230251 46068994 46116942 NC_060932.1 CM039041.1 97.67 True relocation, inconsistency = -16816 46213436 46227417 46116943 46130915 NC_060932.1 CM039041.1 97.64 True relocation, inconsistency = 53505 46280923 46303289 46130916 46153262 NC_060932.1 CM039041.1 97.64 True relocation, inconsistency = -69143 46234147 46287240 46153263 46206323 NC_060932.1 CM039041.1 97.25 True relocation, inconsistency = -88154 46199087 46233525 46206324 46240750 NC_060932.1 CM039041.1 97.02 True local misassembly 46237839 46318840 46241154 46322121 NC_060932.1 CM039041.1 96.98 True relocation, inconsistency = -136402 46182519 46197358 46322202 46336697 NC_060932.1 CM039041.1 95.81 True relocation, inconsistency = 36688 46234047 46323712 46336698 46427712 NC_060932.1 CM039041.1 96.44 True relocation, inconsistency = -20553 46303171 46304912 46427724 46429465 NC_060932.1 CM039041.1 97.93 True local misassembly 46305251 46308650 46429466 46432865 NC_060932.1 CM039041.1 97.5 True local misassembly 46308989 46310789 46432866 46434666 NC_060932.1 CM039041.1 97.86 True relocation, inconsistency = -33980 46276810 46278872 46434667 46436729 NC_060932.1 CM039041.1 97.48 True local misassembly 46278873 46280547 46437068 46438742 NC_060932.1 CM039041.1 98.51 True local misassembly 46280816 46285634 46439350 46444168 NC_060932.1 CM039041.1 97.95 True indel: indel (<= 5bp) 46285636 46299330 46444169 46457863 NC_060932.1 CM039041.1 97.52 True local misassembly 46299669 46301105 46457864 46459300 NC_060932.1 CM039041.1 97.91 True local misassembly 46301106 46303170 46459638 46461702 NC_060932.1 CM039041.1 97.48 True local misassembly 46303171 46305445 46462039 46464313 NC_060932.1 CM039041.1 98.46 True indel: indel (<= 5bp) 46305447 46306839 46464314 46465706 NC_060932.1 CM039041.1 98.13 True local misassembly 46306840 46307688 46466045 46466893 NC_060932.1 CM039041.1 98.0 True indel: indel (<= 5bp) 46307690 46308777 46466894 46467981 NC_060932.1 CM039041.1 98.16 True indel: indel (<= 5bp) 46308779 46311052 46467982 46470255 NC_060932.1 CM039041.1 98.15 True indel: stretch of mismatches 46311078 46312170 46470281 46471373 NC_060932.1 CM039041.1 98.26 True local misassembly 46312527 46316656 46472070 46476199 NC_060932.1 CM039041.1 98.01 True indel: stretch of mismatches 46316682 46317774 46476225 46477317 NC_060932.1 CM039041.1 98.44 True local misassembly 46317924 46321659 46477807 46481542 NC_060932.1 CM039041.1 98.21 True local misassembly 46321660 46323706 46481881 46483927 NC_060932.1 CM039041.1 98.39 True local misassembly 46324334 46362126 46484555 46522350 NC_060932.1 CM039041.1 99.75 True relocation, scaffold gap is present, inconsistency = -180177 46182150 46227944 46522551 46568336 NC_060932.1 CM039041.1 97.09 True relocation, inconsistency = -45522 46182423 46201783 46568337 46587691 NC_060932.1 CM039041.1 97.63 True relocation, inconsistency = 34145 46235961 46284488 46587724 46636912 NC_060932.1 CM039041.1 96.23 True relocation, inconsistency = -50452 46234037 46323693 46636913 46726912 NC_060932.1 CM039041.1 96.89 True relocation, inconsistency = -56402 46267465 46269528 46727086 46729149 NC_060932.1 CM039041.1 97.63 True local misassembly 46269529 46278159 46729487 46738117 NC_060932.1 CM039041.1 98.33 True indel: indel (<= 5bp) 46278161 46280815 46738118 46740772 NC_060932.1 CM039041.1 97.82 True indel: indel (<= 5bp) 46280816 46295566 46740774 46755524 NC_060932.1 CM039041.1 97.43 True local misassembly 46295905 46297367 46755525 46756987 NC_060932.1 CM039041.1 98.09 True local misassembly 46297368 46299431 46757325 46759388 NC_060932.1 CM039041.1 97.0 True local misassembly 46299432 46301706 46759726 46762000 NC_060932.1 CM039041.1 98.46 True indel: indel (<= 5bp) 46301708 46303169 46762001 46763462 NC_060932.1 CM039041.1 98.63 True indel: indel (<= 5bp) 46303578 46305820 46763869 46766111 NC_060932.1 CM039041.1 97.86 True indel: indel (<= 5bp) 46305822 46306908 46766112 46767198 NC_060932.1 CM039041.1 98.53 True indel: indel (<= 5bp) 46306910 46309183 46767199 46769472 NC_060932.1 CM039041.1 98.02 True indel: indel (<= 5bp) 46309185 46310660 46769473 46770948 NC_060932.1 CM039041.1 98.04 True local misassembly 46311078 46312170 46771705 46772797 NC_060932.1 CM039041.1 98.54 True indel: indel (<= 5bp) 46312171 46314787 46772800 46775416 NC_060932.1 CM039041.1 98.01 True indel: indel (<= 5bp) 46314789 46316681 46775417 46777309 NC_060932.1 CM039041.1 97.68 True indel: indel (<= 5bp) 46316682 46317774 46777311 46778403 NC_060932.1 CM039041.1 98.26 True indel: indel (<= 5bp) 46317775 46318522 46778406 46779153 NC_060932.1 CM039041.1 97.59 True indel: indel (<= 5bp) 46318524 46319999 46779154 46780629 NC_060932.1 CM039041.1 98.37 True local misassembly 46320000 46323706 46780968 46784674 NC_060932.1 CM039041.1 98.57 True local misassembly 46324334 46458985 46785302 46919993 NC_060932.1 CM039041.1 99.78 True local misassembly 46458944 46872039 46920804 47333918 NC_060932.1 CM039041.1 99.86 True local misassembly 46884779 54871895 47348724 55342671 NC_060932.1 CM039041.1 99.68 True indel: indel (> 5bp) 54871886 56288106 55342734 56759387 NC_060932.1 CM039041.1 99.8 True indel: indel (> 5bp) 56288437 57804116 56759635 58275293 NC_060932.1 CM039041.1 99.8 True indel: indel (> 5bp) 57804278 59645556 58275445 60116918 NC_060932.1 CM039041.1 99.81 True local misassembly 59648104 60972069 60116919 61440952 NC_060932.1 CM039041.1 99.75 True local misassembly 60972279 62635193 61441062 63105078 NC_060932.1 CM039041.1 99.64 True indel: indel (> 5bp) 62635249 69030223 63105085 69501688 NC_060932.1 CM039041.1 99.83 True indel: indel (> 5bp) 69030273 69881655 69501714 70354929 NC_060932.1 CM039041.1 99.47 True local misassembly 69881963 76287975 70355047 76763238 NC_060932.1 CM039041.1 99.63 True local misassembly 76288250 77790186 76763348 78264046 NC_060932.1 CM039041.1 99.73 True indel: indel (> 5bp) 77790284 82716600 78264110 83190227 NC_060932.1 CM039041.1 99.85 True local misassembly 82717211 86098972 83190228 86565866 NC_060932.1 CM039041.1 99.69 True relocation, inconsistency = -12183 86086790 86092191 86565867 86571269 NC_060932.1 CM039041.1 98.22 True local misassembly 86099023 86124836 86571270 86597083 NC_060932.1 CM039041.1 99.51 True relocation, inconsistency = -32695 86092192 86099022 86597134 86603970 NC_060932.1 CM039041.1 99.47 True local misassembly 86092192 86124836 86603971 86636621 NC_060932.1 CM039041.1 99.45 True local misassembly 86118050 86204314 86636672 86722966 NC_060932.1 CM039041.1 99.41 True relocation, inconsistency = 185933 86390254 86450130 86722973 86782847 NC_060932.1 CM039041.1 99.47 True relocation, inconsistency = 153174 86603305 86655780 86835318 86782848 NC_060932.1 CM039041.1 99.57 True relocation, inconsistency = 490608 86092192 86099022 86835369 86842205 NC_060932.1 CM039041.1 99.42 True local misassembly 86092192 86154796 86842206 86904952 NC_060932.1 CM039041.1 99.25 True relocation, scaffold gap is present, inconsistency = 206239 86389951 86408184 86943263 86925032 NC_060932.1 CM039041.1 99.37 True relocation, inconsistency = 258933 86092192 86131017 86982094 86943264 NC_060932.1 CM039041.1 99.46 True relocation, inconsistency = -432314 86487485 86524455 87019111 86982145 NC_060932.1 CM039041.1 99.41 True relocation, inconsistency = -36694 86487768 86561027 87019118 87092370 NC_060932.1 CM039041.1 99.45 True relocation, inconsistency = -455218 86105810 86126399 87092371 87112959 NC_060932.1 CM039041.1 99.53 True relocation, inconsistency = 557290 86683702 86871067 87112972 87300177 NC_060932.1 CM039041.1 98.95 True relocation, inconsistency = -481110 86389958 86416291 87300178 87326510 NC_060932.1 CM039041.1 99.35 True relocation, inconsistency = -26231 86390247 86431272 87367002 87326697 NC_060932.1 CM039041.1 97.64 True relocation, inconsistency = -26045 86389958 86416291 87367003 87393335 NC_060932.1 CM039041.1 99.35 True relocation, inconsistency = 462324 86878801 87279126 87393521 87793455 NC_060932.1 CM039041.1 99.48 True local misassembly 87282440 87939404 87795272 88446636 NC_060932.1 CM039041.1 98.99 True indel: indel (> 5bp) 87939792 91809772 88447093 92314651 NC_060932.1 CM039041.1 99.72 True local misassembly 91810620 93308040 92314652 93811641 NC_060932.1 CM039041.1 99.81 True indel: indel (> 5bp) 93308179 94778572 93811723 95282640 NC_060932.1 CM039041.1 99.87 True local misassembly 94779262 95732066 95282662 96235957 NC_060932.1 CM039041.1 99.76 True indel: indel (> 5bp) 95732136 96755646 96235963 97259362 NC_060932.1 CM039041.1 99.73 True indel: indel (> 5bp) 96756030 101176394 97259786 101680143 NC_060932.1 CM039041.1 99.8 True indel: indel (> 5bp) 101176565 101551256 101680354 102055093 NC_060932.1 CM039041.1 99.77 True local misassembly 101552452 102778243 102056765 103282718 NC_060932.1 CM039041.1 99.79 True indel: indel (<= 5bp) 102778303 108670633 103282773 109172826 NC_060932.1 CM039041.1 99.77 True local misassembly 108671232 112191464 109173597 112697093 NC_060932.1 CM039041.1 99.74 True fake: not a misassembly (possible transposable element) 112191491 112192351 112697959 112697099 NC_060932.1 CM039041.1 99.88 True fake: not a misassembly (possible transposable element) 112192352 113288738 112697960 113794589 NC_060932.1 CM039041.1 99.84 True indel: indel (> 5bp) 113288819 119597641 113794736 120098080 NC_060932.1 CM039041.1 99.79 True indel: indel (> 5bp) 119598070 122048072 120098461 122542180 NC_060932.1 CM039041.1 99.58 True local misassembly 122050521 122074010 122542580 122565581 NC_060932.1 CM039041.1 97.74 True local misassembly 122074137 124730116 122566110 125221921 NC_060932.1 CM039041.1 99.77 True local misassembly 124730250 128443978 125222306 128933192 NC_060932.1 CM039041.1 99.69 True local misassembly 128444204 131651706 128933257 132145826 NC_060932.1 CM039041.1 99.55 True indel: indel (> 5bp) 131651741 136997848 132145850 137495550 NC_060932.1 CM039041.1 99.75 True indel: stretch of mismatches 136997849 138353052 137495551 138854813 NC_060932.1 CM039041.1 99.57 True local misassembly 138352986 140229887 138854883 140732130 NC_060932.1 CM039041.1 99.72 True indel: stretch of mismatches 140229913 140807501 140732156 141309503 NC_060932.1 CM039041.1 99.75 True indel: indel (> 5bp) 140807504 142323736 141309584 142826753 NC_060932.1 CM039041.1 99.64 True local misassembly 142324622 142948910 142827134 143451468 NC_060932.1 CM039041.1 99.09 True local misassembly 142949097 143120056 143451822 143623981 NC_060932.1 CM039041.1 98.96 True local misassembly 143120917 143357614 143624522 143861852 NC_060932.1 CM039041.1 99.37 True local misassembly 143358064 143396217 143862131 143900618 NC_060932.1 CM039041.1 95.47 True indel: indel (<= 5bp) 143396277 144363465 143900682 144869526 NC_060932.1 CM039041.1 99.31 True local misassembly 144363975 145014749 144870573 145506777 NC_060932.1 CM039041.1 97.3 True local misassembly 145016352 145858745 145506778 146349076 NC_060932.1 CM039041.1 99.45 True local misassembly 145859164 146254006 146349288 146739904 NC_060932.1 CM039041.1 98.48 True translocation 2727 5611 146743200 146740366 NC_060948.1 CM039041.1 97.71 True CONTIG CM039041.1 146747882 misassembled 61705546 61707349 1864 41 NC_060943.1 CM039042.1 96.79 True translocation 4533 395713 6116 392323 NC_060933.1 CM039042.1 97.97 True local misassembly 400396 808201 393679 801329 NC_060933.1 CM039042.1 99.65 True local misassembly 808883 1806503 801841 1799572 NC_060933.1 CM039042.1 99.51 True local misassembly 1807233 4344478 1800497 4337673 NC_060933.1 CM039042.1 99.79 True local misassembly 4344866 6384299 4337941 6383255 NC_060933.1 CM039042.1 99.41 True fake: not a misassembly (possible transposable element) 6392777 6395409 6386132 6383500 NC_060933.1 CM039042.1 96.55 True fake: not a misassembly (possible transposable element) 6383972 7951967 6387014 7958361 NC_060933.1 CM039042.1 98.53 True local misassembly 7955850 16763410 7958362 16766745 NC_060933.1 CM039042.1 99.77 True indel: indel (> 5bp) 16763541 16951047 16766903 16954338 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 16951184 17566910 16954406 17570140 NC_060933.1 CM039042.1 99.94 True indel: indel (> 5bp) 17566999 17922115 17570241 17925229 NC_060933.1 CM039042.1 99.75 True local misassembly 17925481 22428282 17925230 22428039 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 22428363 28199911 22428155 28200969 NC_060933.1 CM039042.1 99.79 True local misassembly 28203050 29881151 28202727 29880912 NC_060933.1 CM039042.1 99.88 True local misassembly 29884100 31399565 29883114 31400279 NC_060933.1 CM039042.1 99.54 True local misassembly 31399714 31636211 31400539 31637016 NC_060933.1 CM039042.1 99.72 True indel: indel (> 5bp) 31636364 32917391 31637223 32918675 NC_060933.1 CM039042.1 99.68 True indel: indel (> 5bp) 32917779 35514311 32919026 35514706 NC_060933.1 CM039042.1 99.8 True local misassembly 35514707 39997134 35514735 40009421 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = 1816946 41814081 41957272 40009422 40152622 NC_060933.1 CM039042.1 99.57 True local misassembly 41957666 42391484 40152727 40586580 NC_060933.1 CM039042.1 99.76 True indel: stretch of mismatches 42391683 42432910 40586779 40627990 NC_060933.1 CM039042.1 99.69 True translocation 12727877 12729093 40628211 40629427 NC_060938.1 CM039042.1 96.14 True local misassembly 12732098 12733764 40632945 40634612 NC_060938.1 CM039042.1 95.85 True translocation 42432875 44188439 40634613 42390117 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = -75475 44188480 44211356 42412994 42390118 NC_060933.1 CM039042.1 99.85 True inversion 44211321 44962344 42412995 43164337 NC_060933.1 CM039042.1 99.89 True local misassembly 44963537 44965645 43164338 43166446 NC_060933.1 CM039042.1 99.02 True fake: not a misassembly (possible transposable element) 47572779 47574564 43166912 43168697 NC_060933.1 CM039042.1 96.86 True fake: not a misassembly (possible transposable element) 44968281 44971840 43168738 43172297 NC_060933.1 CM039042.1 99.47 True local misassembly 44971351 44973648 43172486 43174779 NC_060933.1 CM039042.1 99.13 True local misassembly 44968941 44969891 43175507 43176457 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = 8671 44978563 45002776 43176458 43199992 NC_060933.1 CM039042.1 96.91 True local misassembly 44999721 45005532 43199993 43205804 NC_060933.1 CM039042.1 99.48 True local misassembly 45008593 45022325 43205805 43219539 NC_060933.1 CM039042.1 99.55 True relocation, inconsistency = 19705 45042434 45050228 43219943 43227737 NC_060933.1 CM039042.1 99.92 True local misassembly 45054142 45072852 43227738 43245981 NC_060933.1 CM039042.1 97.34 True local misassembly 45066725 45072548 43245982 43251805 NC_060933.1 CM039042.1 99.51 True local misassembly 45072549 45073059 43252486 43252996 NC_060933.1 CM039042.1 100.0 True local misassembly 45073060 45084779 43253509 43265228 NC_060933.1 CM039042.1 99.81 True local misassembly 45085972 45090272 43265229 43269529 NC_060933.1 CM039042.1 99.96 True relocation, inconsistency = 197525 45287798 45301260 43269530 43282992 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -196845 45104416 45109404 43282993 43287981 NC_060933.1 CM039042.1 99.55 True local misassembly 45115910 45121204 43288191 43293488 NC_060933.1 CM039042.1 99.59 True relocation, inconsistency = 10888 45132093 45164020 43293489 43325416 NC_060933.1 CM039042.1 99.87 True local misassembly 45157045 45173352 43325417 43341724 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = -7488 45165865 45187872 43341725 43363561 NC_060933.1 CM039042.1 99.1 True relocation, inconsistency = -27904 45159969 45173807 43363562 43377400 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 21608 45195416 45204850 43377401 43386835 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = -12589 45192262 45216965 43386836 43411539 NC_060933.1 CM039042.1 99.82 True local misassembly 45212542 45213071 43411540 43412069 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -17013 45196059 45203471 43412070 43419485 NC_060933.1 CM039042.1 99.48 True relocation, inconsistency = 431079 45634551 45646684 43419486 43431619 NC_060933.1 CM039042.1 99.72 True local misassembly 45648557 45650439 43431620 43433502 NC_060933.1 CM039042.1 99.58 True relocation, inconsistency = 127765 45778205 45800985 43433503 43456278 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = -120791 45680195 45688252 43456279 43464336 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = -403520 45284733 45288600 43464337 43468204 NC_060933.1 CM039042.1 99.7 True local misassembly 45290473 45301260 43468205 43478992 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -192933 45108328 45111659 43478993 43482324 NC_060933.1 CM039042.1 99.48 True relocation, inconsistency = 40664 45152324 45157761 43482325 43487762 NC_060933.1 CM039042.1 99.52 True relocation, inconsistency = 84897 45243452 45244876 43488556 43489980 NC_060933.1 CM039042.1 99.41 True relocation, inconsistency = 551025 45795902 45800225 43489981 43494304 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = -682373 45117889 45123695 43494341 43500143 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -7824 45115872 45124715 43500144 43508990 NC_060933.1 CM039042.1 99.58 True relocation, inconsistency = -7827 45116889 45121355 43508991 43513457 NC_060933.1 CM039042.1 99.62 True local misassembly 45122548 45134160 43513458 43525066 NC_060933.1 CM039042.1 99.73 True local misassembly 45137055 45143322 43525067 43531334 NC_060933.1 CM039042.1 99.64 True local misassembly 45137027 45141103 43531335 43535408 NC_060933.1 CM039042.1 99.58 True local misassembly 45134128 45145360 43535409 43546642 NC_060933.1 CM039042.1 99.69 True local misassembly 45148594 45155694 43546643 43553743 NC_060933.1 CM039042.1 99.6 True relocation, inconsistency = 387357 45543291 45552428 43553983 43563121 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = -438908 45113521 45115909 43563122 43565510 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = 41344 45157254 45173807 43565511 43582064 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 17864 45191672 45207437 43582065 43597830 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = -12589 45194849 45203013 43597831 43605998 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 442991 45646005 45651318 43605999 43611306 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = 111432 45762752 45765186 43611308 43613742 NC_060933.1 CM039042.1 99.46 True relocation, inconsistency = 49000 45814187 45817625 43613743 43617181 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = -29263 45788363 45800315 43617182 43629134 NC_060933.1 CM039042.1 99.6 True relocation, inconsistency = -506621 45293695 45312670 43629135 43648109 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = 7824 45320495 45334862 43648110 43662477 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = 50698 45385561 45390832 43662478 43667749 NC_060933.1 CM039042.1 99.62 True local misassembly 45389473 45390163 43667750 43668440 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = 20582 45410746 45425972 43668441 43683668 NC_060933.1 CM039042.1 99.87 True local misassembly 45425486 45440681 43683862 43699057 NC_060933.1 CM039042.1 99.81 True local misassembly 45436087 45440646 43699058 43703617 NC_060933.1 CM039042.1 97.73 True relocation, inconsistency = -23652 45416995 45425972 43703618 43712595 NC_060933.1 CM039042.1 99.63 True local misassembly 45425486 45432629 43712789 43719932 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = -7144 45425486 45440681 43719933 43735128 NC_060933.1 CM039042.1 99.82 True local misassembly 45436087 45446444 43735129 43745486 NC_060933.1 CM039042.1 99.71 True indel: stretch of mismatches 45446445 45464461 43745487 43763502 NC_060933.1 CM039042.1 99.85 True relocation, inconsistency = -10883 45453579 45482387 43763503 43792310 NC_060933.1 CM039042.1 99.79 True local misassembly 45480516 45484375 43792311 43796170 NC_060933.1 CM039042.1 99.55 True local misassembly 45478082 45486774 43796171 43804863 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = -11566 45475209 45492513 43804864 43822166 NC_060933.1 CM039042.1 99.73 True local misassembly 45498978 45499875 43822167 43823064 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = -19218 45480658 45484344 43823065 43826751 NC_060933.1 CM039042.1 99.74 True local misassembly 45490809 45506938 43826752 43842880 NC_060933.1 CM039042.1 99.71 True local misassembly 45507619 45510362 43842881 43845624 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = -9862 45500501 45524777 43845625 43869903 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = 201257 45726035 45727489 43869904 43871358 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = -253977 45474194 45474872 43872040 43872718 NC_060933.1 CM039042.1 97.2 True local misassembly 45476011 45481859 43873857 43879705 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = 40984 45522844 45538256 43879706 43895117 NC_060933.1 CM039042.1 99.63 True relocation, inconsistency = -16838 45521419 45542997 43895118 43916696 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = 197347 45740345 45750266 43916697 43926618 NC_060933.1 CM039042.1 99.63 True local misassembly 45745843 45751750 43926619 43932526 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = -123907 45627844 45659252 43932527 43963881 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = 117045 45776298 45800994 43963882 43988637 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = -541497 45259498 45260654 43988638 43989794 NC_060933.1 CM039042.1 99.23 True relocation, inconsistency = 517504 45778159 45790787 43989795 44002420 NC_060933.1 CM039042.1 99.63 True relocation, inconsistency = -103607 45687181 45706058 44002421 44021298 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 123341 45829400 45835991 44021299 44027890 NC_060933.1 CM039042.1 99.59 True relocation, inconsistency = -364400 45471592 45474701 44027891 44031000 NC_060933.1 CM039042.1 99.72 True local misassembly 45481678 45491170 44031001 44040493 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 205165 45696673 45701757 44040831 44045913 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = 123341 45825099 45835219 44045914 44056034 NC_060933.1 CM039042.1 99.63 True relocation, inconsistency = -339906 45495314 45500862 44056035 44061583 NC_060933.1 CM039042.1 99.66 True indel: stretch of mismatches 45501200 45505837 44061921 44066558 NC_060933.1 CM039042.1 99.16 True relocation, inconsistency = 214352 45720190 45734465 44066559 44080835 NC_060933.1 CM039042.1 99.81 True local misassembly 45739570 45740772 44080836 44082038 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = -15312 45725461 45728016 44082039 44084594 NC_060933.1 CM039042.1 99.74 True relocation, inconsistency = 12760 45740777 45772007 44084595 44115825 NC_060933.1 CM039042.1 99.8 True local misassembly 45774560 45778158 44115826 44119424 NC_060933.1 CM039042.1 99.69 True local misassembly 45781904 45811447 44119425 44148968 NC_060933.1 CM039042.1 99.79 True local misassembly 45808896 45824870 44148969 44164942 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = 52910 45877781 45886620 44164943 44173782 NC_060933.1 CM039042.1 99.85 True local misassembly 45883901 45890990 44173783 44180872 NC_060933.1 CM039042.1 99.88 True local misassembly 45893543 45898243 44180873 44185573 NC_060933.1 CM039042.1 99.52 True local misassembly 45898244 45919495 44188126 44209377 NC_060933.1 CM039042.1 99.88 True relocation, inconsistency = 10208 45929704 45932191 44209378 44211865 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = 11059 45943251 45964205 44211866 44232649 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = -9870 45954336 45963298 44232650 44241441 NC_060933.1 CM039042.1 98.34 True local misassembly 45961466 45967475 44241652 44247661 NC_060933.1 CM039042.1 99.58 True local misassembly 45962448 45963263 44247738 44248553 NC_060933.1 CM039042.1 99.15 True local misassembly 45965136 45968860 44248554 44252278 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = 23387 45992248 45998050 44252279 44258081 NC_060933.1 CM039042.1 99.43 True local misassembly 45995499 46014664 44258082 44277038 NC_060933.1 CM039042.1 98.69 True local misassembly 46017897 46020413 44277039 44279555 NC_060933.1 CM039042.1 99.19 True local misassembly 46019734 46021993 44279556 44281815 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 7144 46029138 46048439 44281816 44301116 NC_060933.1 CM039042.1 99.8 True relocation, inconsistency = 10887 46059591 46076247 44301381 44318037 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 150218 46226466 46232428 44318038 44324000 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = -50695 46181734 46183611 44324001 44325878 NC_060933.1 CM039042.1 99.93 True local misassembly 46188036 46204073 44325879 44341916 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = -20922 46183152 46192841 44341917 44351606 NC_060933.1 CM039042.1 99.93 True fake: not a misassembly (possible transposable element) 46151330 46154108 44351607 44354385 NC_060933.1 CM039042.1 99.49 True fake: not a misassembly (possible transposable element) 46199362 46209848 44354386 44364866 NC_060933.1 CM039042.1 99.76 True local misassembly 46207977 46214041 44364867 44370931 NC_060933.1 CM039042.1 99.74 True relocation, scaffold gap is present, inconsistency = -928252 45286397 45301260 44371539 44386402 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = -192253 45109008 45113077 44386403 44390472 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -16672 45096864 45106317 44390931 44400384 NC_060933.1 CM039042.1 99.22 True local misassembly 45110910 45111656 44400385 44401131 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = 43216 45154873 45159968 44401132 44406227 NC_060933.1 CM039042.1 99.71 True relocation, inconsistency = 82345 45243452 45246648 44407366 44410562 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = -128796 45117889 45124715 44410599 44417421 NC_060933.1 CM039042.1 99.55 True relocation, inconsistency = -10376 45114340 45115871 44417422 44418953 NC_060933.1 CM039042.1 99.75 True indel: stretch of mismatches 45115872 45124715 44418954 44427800 NC_060933.1 CM039042.1 99.65 True local misassembly 45119441 45121225 44427801 44429585 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = 14466 45135698 45146280 44429592 44440175 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -21951 45124820 45134160 44440666 44450006 NC_060933.1 CM039042.1 99.6 True local misassembly 45134128 45146123 44450312 44462307 NC_060933.1 CM039042.1 99.73 True local misassembly 45146804 45155694 44462308 44471198 NC_060933.1 CM039042.1 99.63 True local misassembly 45160471 45171325 44471551 44482405 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 494884 45666210 45669281 44482406 44485477 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = -472596 45196686 45205666 44485478 44494458 NC_060933.1 CM039042.1 99.79 True relocation, inconsistency = 417753 45623420 45650821 44494459 44521803 NC_060933.1 CM039042.1 99.46 True relocation, inconsistency = -529935 45120887 45124715 44521804 44525632 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = -10376 45114340 45116024 44525633 44527317 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 45116025 45116948 44527321 44528244 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 521938 45638899 45641358 44528257 44530716 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = 146142 45787501 45800315 44530717 44543531 NC_060933.1 CM039042.1 99.71 True relocation, inconsistency = -506621 45293695 45312670 44543532 44562507 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 7824 45320495 45329898 44562508 44571911 NC_060933.1 CM039042.1 99.85 True local misassembly 45326666 45334862 44571912 44580108 NC_060933.1 CM039042.1 99.6 True relocation, inconsistency = 77064 45411938 45425972 44580120 44594155 NC_060933.1 CM039042.1 99.74 True relocation, inconsistency = 458819 45884792 45888896 44594156 44598260 NC_060933.1 CM039042.1 99.54 True relocation, inconsistency = -463411 45425486 45440681 44598261 44613456 NC_060933.1 CM039042.1 99.83 True local misassembly 45436087 45445447 44613457 44622817 NC_060933.1 CM039042.1 99.79 True relocation, inconsistency = 282892 45728363 45729819 44622841 44624297 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -315396 45414424 45425972 44624298 44635846 NC_060933.1 CM039042.1 99.69 True local misassembly 45425486 45440681 44636040 44651235 NC_060933.1 CM039042.1 99.82 True local misassembly 45436087 45445447 44651236 44660596 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 47793 45493548 45503085 44660904 44670445 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = -56635 45446451 45454986 44670446 44678981 NC_060933.1 CM039042.1 99.73 True local misassembly 45449883 45482387 44678982 44711486 NC_060933.1 CM039042.1 99.84 True local misassembly 45480516 45486774 44711487 44717745 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = -11566 45475209 45484344 44717746 44726881 NC_060933.1 CM039042.1 99.72 True local misassembly 45490809 45510362 44726882 44746436 NC_060933.1 CM039042.1 99.91 True relocation, inconsistency = -9862 45500501 45530655 44746437 44776593 NC_060933.1 CM039042.1 99.78 True local misassembly 45524193 45542997 44776594 44795398 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 12078 45555076 45563828 44795399 44804151 NC_060933.1 CM039042.1 99.66 True relocation, inconsistency = -371532 45193078 45201599 44804933 44813457 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 544212 45745812 45751750 44813458 44819396 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = -123907 45627844 45659252 44819397 44850751 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = 117045 45776298 45794018 44850752 44868471 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = -142910 45651109 45654093 44868472 44871456 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = -18376 45635718 45639129 44871457 44874867 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = 39303 45678433 45698067 44874868 44894502 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = 160940 45859008 45870747 44894503 44906241 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = -409139 45461613 45471679 44906246 44916313 NC_060933.1 CM039042.1 99.63 True relocation, inconsistency = 225747 45697427 45702502 44916314 44921389 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 149540 45852043 45858958 44921390 44928305 NC_060933.1 CM039042.1 99.39 True relocation, inconsistency = -387367 45471592 45474701 44928306 44931415 NC_060933.1 CM039042.1 99.74 True local misassembly 45481678 45484344 44931416 44934082 NC_060933.1 CM039042.1 99.72 True local misassembly 45490809 45503085 44934083 44946359 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = 215544 45718630 45734465 44946360 44962196 NC_060933.1 CM039042.1 99.8 True local misassembly 45739570 45740772 44962197 44963399 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = -15312 45725461 45734465 44963400 44972404 NC_060933.1 CM039042.1 99.74 True local misassembly 45733786 45741387 44972405 44980006 NC_060933.1 CM039042.1 99.83 True relocation, inconsistency = -483304 45258084 45265214 44980007 44987137 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = 490280 45755495 45769485 44987138 45001128 NC_060933.1 CM039042.1 99.76 True local misassembly 45768806 45777459 45001129 45009782 NC_060933.1 CM039042.1 99.52 True relocation, inconsistency = -9016 45768444 45778158 45009783 45019497 NC_060933.1 CM039042.1 99.77 True local misassembly 45783776 45808368 45019498 45044090 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = 60565 45868934 45871087 45044091 45046244 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 15992 45887080 45900460 45046245 45059625 NC_060933.1 CM039042.1 99.84 True fake: not a misassembly (possible transposable element) 45319324 45321187 45059626 45061489 NC_060933.1 CM039042.1 99.41 True fake: not a misassembly (possible transposable element) 45901133 45910068 45061490 45070425 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = -7150 45902919 45919495 45070426 45087002 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = -509688 45409821 45413743 45087016 45090939 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = 529764 45943508 45957852 45090940 45105284 NC_060933.1 CM039042.1 99.89 True fake: not a misassembly (possible transposable element) 45360243 45366131 45106342 45112230 NC_060933.1 CM039042.1 99.42 True fake: not a misassembly (possible transposable element) 45962448 45963263 45112432 45113247 NC_060933.1 CM039042.1 99.17 True local misassembly 45965136 45969222 45113248 45117334 NC_060933.1 CM039042.1 99.58 True local misassembly 45965231 45968860 45117767 45121396 NC_060933.1 CM039042.1 99.32 True fake: not a misassembly (possible transposable element) 45992248 45998050 45121397 45127199 NC_060933.1 CM039042.1 99.46 True fake: not a misassembly (possible transposable element) 45971432 45977802 45127200 45133571 NC_060933.1 CM039042.1 99.45 True relocation, inconsistency = 23387 46001190 46020448 45133572 45152830 NC_060933.1 CM039042.1 99.82 True local misassembly 46019769 46027592 45152831 45160654 NC_060933.1 CM039042.1 99.72 True local misassembly 46032696 46033953 45160655 45161912 NC_060933.1 CM039042.1 99.74 True indel: stretch of mismatches 46033954 46037941 45161913 45165899 NC_060933.1 CM039042.1 99.63 True local misassembly 46035391 46048439 45165900 45178948 NC_060933.1 CM039042.1 99.76 True relocation, inconsistency = 10887 46059591 46066666 45179213 45186288 NC_060933.1 CM039042.1 99.64 True local misassembly 46067347 46081351 45186289 45200293 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = 147666 46229018 46235906 45200294 45207182 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = -46951 46188956 46204073 45207183 45222300 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = -16498 46188036 46199814 45222761 45234542 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = -57332 46142741 46143442 45234801 45235503 NC_060933.1 CM039042.1 99.0 True local misassembly 46146484 46162217 45238542 45254275 NC_060933.1 CM039042.1 99.6 True relocation, inconsistency = 14120 46176338 46185483 45254276 45263421 NC_060933.1 CM039042.1 99.75 True local misassembly 46183612 46199814 45263422 45279627 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = 41170 46241212 46243828 45279855 45282471 NC_060933.1 CM039042.1 99.48 True relocation, inconsistency = 64477 46308306 46311801 45282472 45285967 NC_060933.1 CM039042.1 99.11 True local misassembly 46307378 46312346 45285968 45290936 NC_060933.1 CM039042.1 99.28 True relocation, inconsistency = -72645 46241957 46247740 45293192 45298975 NC_060933.1 CM039042.1 99.49 True local misassembly 46252162 46259823 45298976 45306637 NC_060933.1 CM039042.1 99.79 True relocation, inconsistency = 15312 46275136 46289727 45306638 45321229 NC_060933.1 CM039042.1 99.84 True local misassembly 46292280 46316305 45321230 45345255 NC_060933.1 CM039042.1 99.91 True relocation, inconsistency = -8000 46308306 46341273 45345256 45378224 NC_060933.1 CM039042.1 99.69 True local misassembly 46343146 46348761 45378225 45383840 NC_060933.1 CM039042.1 99.58 True local misassembly 46347905 46364538 45384344 45400977 NC_060933.1 CM039042.1 99.81 True local misassembly 46360795 46364116 45400978 45404299 NC_060933.1 CM039042.1 99.32 True local misassembly 46369220 46373643 45404300 45408723 NC_060933.1 CM039042.1 99.82 True local misassembly 46369220 46389420 45408724 45428923 NC_060933.1 CM039042.1 99.72 True local misassembly 46388741 46395264 45428924 45435447 NC_060933.1 CM039042.1 99.84 True local misassembly 46400369 46425744 45435448 45460822 NC_060933.1 CM039042.1 99.84 True fake: not a misassembly (possible transposable element) 46463731 46465468 45461382 45463119 NC_060933.1 CM039042.1 99.67 True fake: not a misassembly (possible transposable element) 46428721 46432813 45463120 45467212 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = 62094 46494908 46513302 45467213 45485607 NC_060933.1 CM039042.1 99.89 True local misassembly 46513983 46524008 45485608 45495633 NC_060933.1 CM039042.1 99.64 True relocation, inconsistency = 51717 46575726 46593519 45495634 45513426 NC_060933.1 CM039042.1 99.88 True relocation, inconsistency = -47806 46545714 46546490 45513427 45514203 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 35045 46581536 46592871 45514204 45525538 NC_060933.1 CM039042.1 99.58 True relocation, inconsistency = 14800 46607672 46639563 45525539 45557431 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = -14119 46625445 46636067 45557432 45568054 NC_060933.1 CM039042.1 99.86 True local misassembly 46636748 46642283 45568055 45573590 NC_060933.1 CM039042.1 99.72 True local misassembly 46642066 46645138 45574053 45577125 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = -11911 46633228 46639011 45577126 45582909 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = -14119 46624893 46633674 45582910 45591691 NC_060933.1 CM039042.1 99.81 True local misassembly 46636907 46639011 45591692 45593796 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -14119 46624893 46636067 45593797 45604971 NC_060933.1 CM039042.1 99.86 True local misassembly 46636748 46639035 45604972 45607259 NC_060933.1 CM039042.1 99.12 True fake: not a misassembly (possible transposable element) 46337233 46339070 45607260 45609097 NC_060933.1 CM039042.1 98.65 True fake: not a misassembly (possible transposable element) 46642066 46655188 45609098 45622219 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = 36264 46691453 46696389 45622220 45627156 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = -307956 46388434 46390930 45627157 45629653 NC_060933.1 CM039042.1 99.21 True local misassembly 46388379 46394028 45629654 45635303 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 249744 46643773 46648384 45635304 45639915 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = -260464 46388434 46394028 45640429 45646023 NC_060933.1 CM039042.1 99.3 True relocation, inconsistency = 249744 46643773 46648384 45646024 45650635 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = 371587 47019972 47022291 45650636 45652955 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = -331071 46691221 46696389 45652956 45658124 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = -307956 46388434 46393482 45658125 45663173 NC_060933.1 CM039042.1 99.21 True local misassembly 46388379 46394045 45663174 45668840 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 260292 46654338 46664456 45668841 45678959 NC_060933.1 CM039042.1 99.93 True local misassembly 46667862 46670884 45678960 45681984 NC_060933.1 CM039042.1 99.43 True local misassembly 46666801 46673939 45681985 45689123 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = 409009 47082949 47092685 45689124 45698858 NC_060933.1 CM039042.1 99.28 True relocation, inconsistency = -407138 46685603 46701025 45698914 45714337 NC_060933.1 CM039042.1 99.81 True local misassembly 46695239 46700929 45714338 45720028 NC_060933.1 CM039042.1 97.98 True local misassembly 46697527 46704897 45720029 45727399 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = 27385 46732283 46746457 45727400 45742254 NC_060933.1 CM039042.1 95.23 True local misassembly 46740673 46745157 45742255 45746739 NC_060933.1 CM039042.1 99.86 True local misassembly 46739373 46762873 45746740 45770240 NC_060933.1 CM039042.1 99.81 True local misassembly 46760322 46770048 45770241 45779967 NC_060933.1 CM039042.1 99.69 True local misassembly 46771921 46773420 45779968 45781467 NC_060933.1 CM039042.1 99.45 True relocation, inconsistency = 7656 46781301 46786986 45781692 45787377 NC_060933.1 CM039042.1 99.7 True local misassembly 46781631 46786369 45788316 45793054 NC_060933.1 CM039042.1 99.59 True local misassembly 46784839 46790305 45793055 45798350 NC_060933.1 CM039042.1 96.72 True local misassembly 46789626 46803567 45798351 45812292 NC_060933.1 CM039042.1 99.88 True local misassembly 46798293 46802681 45812293 45816681 NC_060933.1 CM039042.1 99.67 True local misassembly 46800130 46803549 45816682 45820101 NC_060933.1 CM039042.1 99.41 True local misassembly 46806782 46829428 45820102 45843088 NC_060933.1 CM039042.1 98.16 True local misassembly 46830618 46840653 45843089 45853123 NC_060933.1 CM039042.1 99.78 True local misassembly 46842013 46842520 45853124 45853631 NC_060933.1 CM039042.1 99.66 True local misassembly 46837250 46839121 45853632 45855503 NC_060933.1 CM039042.1 99.15 True fake: not a misassembly (possible transposable element) 46921128 46924689 45855504 45859065 NC_060933.1 CM039042.1 99.25 True fake: not a misassembly (possible transposable element) 46839961 46844788 45859066 45863894 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = -7142 46837647 46838441 45863895 45864689 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 110592 46949034 46953624 45864690 45869280 NC_060933.1 CM039042.1 98.5 True relocation, inconsistency = -605683 46348400 46351474 45869739 45872814 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = 485564 46837039 46838425 45872815 45874201 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -531506 46306920 46311666 45874202 45878948 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = 343150 46654817 46655464 45878949 45879596 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 195323 46851138 46856307 45879947 45885116 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = -10040 46846268 46860718 45885117 45899905 NC_060933.1 CM039042.1 97.03 True local misassembly 46860039 46868715 45899906 45908582 NC_060933.1 CM039042.1 99.42 True local misassembly 46866164 46881954 45908583 45924373 NC_060933.1 CM039042.1 99.66 True local misassembly 46879105 46883500 45924757 45929151 NC_060933.1 CM039042.1 99.61 True local misassembly 46886224 46895968 45929152 45938896 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -13614 46882355 46886640 45938897 45943182 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 168782 47055503 47058927 45943263 45946687 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = -128963 46929965 46941614 45946688 45958337 NC_060933.1 CM039042.1 99.79 True relocation, inconsistency = -93930 46847685 46849627 45958338 45960280 NC_060933.1 CM039042.1 98.76 True relocation, inconsistency = 32327 46882309 46886640 45960635 45964966 NC_060933.1 CM039042.1 99.15 True relocation, inconsistency = 186819 47073540 47076964 45965047 45968471 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = -147000 46929965 46943557 45968472 45982064 NC_060933.1 CM039042.1 99.79 True fake: not a misassembly (possible transposable element) 47102979 47107095 45982065 45986181 NC_060933.1 CM039042.1 98.75 True fake: not a misassembly (possible transposable element) 46948355 46960252 45986182 45998080 NC_060933.1 CM039042.1 99.47 True relocation, inconsistency = 215389 47175642 47181696 45998081 46004135 NC_060933.1 CM039042.1 99.93 True local misassembly 47179074 47211761 46006785 46039470 NC_060933.1 CM039042.1 99.74 True local misassembly 47212952 47223614 46039471 46050133 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 189373 47412988 47430994 46050134 46068140 NC_060933.1 CM039042.1 98.7 True relocation, inconsistency = -186477 47246135 47251106 46069758 46074729 NC_060933.1 CM039042.1 99.34 True local misassembly 47255406 47259817 46075293 46079704 NC_060933.1 CM039042.1 99.46 True fake: not a misassembly (possible transposable element) 47179571 47180481 46080265 46081175 NC_060933.1 CM039042.1 98.75 True fake: not a misassembly (possible transposable element) 47258907 47265109 46081176 46087378 NC_060933.1 CM039042.1 99.83 True local misassembly 47265790 47275431 46087379 46097018 NC_060933.1 CM039042.1 99.37 True fake: not a misassembly (possible transposable element) 47285125 47289784 46097019 46101678 NC_060933.1 CM039042.1 99.3 True fake: not a misassembly (possible transposable element) 47282474 47291531 46101679 46110738 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 270747 47563132 47567182 46111592 46115644 NC_060933.1 CM039042.1 96.35 True relocation, inconsistency = -155026 47412678 47426957 46116166 46130786 NC_060933.1 CM039042.1 96.12 True local misassembly 47427587 47434346 46131077 46137711 NC_060933.1 CM039042.1 96.21 True relocation, inconsistency = -112445 47321902 47330239 46137712 46146046 NC_060933.1 CM039042.1 99.54 True local misassembly 47329048 47351855 46146047 46168854 NC_060933.1 CM039042.1 99.39 True relocation, inconsistency = 8680 47360536 47379346 46168855 46187665 NC_060933.1 CM039042.1 99.83 True indel: stretch of mismatches 47379737 47384450 46188056 46192769 NC_060933.1 CM039042.1 99.26 True local misassembly 47383259 47384003 46192770 46193514 NC_060933.1 CM039042.1 99.5 True local misassembly 47384427 47386154 46194106 46195833 NC_060933.1 CM039042.1 99.36 True indel: indel (<= 5bp) 47386317 47393757 46195999 46203439 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 14976 47408734 47438713 46203440 46233419 NC_060933.1 CM039042.1 99.19 True relocation, inconsistency = 16680 47455394 47471728 46233420 46250100 NC_060933.1 CM039042.1 95.81 True local misassembly 47474280 47477166 46250101 46252987 NC_060933.1 CM039042.1 99.31 True indel: indel (<= 5bp) 47477167 47477845 46252989 46253667 NC_060933.1 CM039042.1 99.41 True indel: indel (<= 5bp) 47477847 47498184 46253668 46274005 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = 8848 47507304 47508421 46274277 46275394 NC_060933.1 CM039042.1 98.57 True local misassembly 47511907 47513561 46275817 46277471 NC_060933.1 CM039042.1 99.4 True indel: indel (<= 5bp) 47513563 47536569 46277472 46300478 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = -99728 47436842 47441882 46300479 46305519 NC_060933.1 CM039042.1 98.76 True relocation, inconsistency = 106534 47548417 47561518 46305520 46318620 NC_060933.1 CM039042.1 99.71 True local misassembly 47562711 47576986 46318621 46332896 NC_060933.1 CM039042.1 99.77 True local misassembly 47575797 48616361 46332897 47373333 NC_060933.1 CM039042.1 99.88 True local misassembly 48616846 48617383 47379202 47379739 NC_060933.1 CM039042.1 99.26 True indel: indel (> 5bp) 48617588 48619019 47379919 47381350 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 48619060 48621237 47381411 47383588 NC_060933.1 CM039042.1 100.0 True local misassembly 48622687 48623209 47385113 47385635 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 48623412 48624025 47385848 47386461 NC_060933.1 CM039042.1 99.51 True local misassembly 48625087 48625595 47387533 47388041 NC_060933.1 CM039042.1 99.61 True local misassembly 48626292 48626821 47389088 47389617 NC_060933.1 CM039042.1 99.06 True local misassembly 48627603 48629732 47390344 47392473 NC_060933.1 CM039042.1 99.44 True indel: indel (> 5bp) 48630048 48631260 47392804 47394016 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 48631261 48631814 47394022 47394575 NC_060933.1 CM039042.1 100.0 True local misassembly 48632782 48633642 47395658 47396518 NC_060933.1 CM039042.1 98.95 True relocation, inconsistency = -21141 48614639 48639091 47398656 47423320 NC_060933.1 CM039042.1 97.69 True local misassembly 48635585 48714724 47424561 47503726 NC_060933.1 CM039042.1 99.36 True local misassembly 48718954 48906786 47503727 47691723 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = -7779 48899008 48950058 47691724 47742978 NC_060933.1 CM039042.1 96.84 True relocation, inconsistency = -15017 48935042 48944997 47742979 47753140 NC_060933.1 CM039042.1 97.73 True local misassembly 48939810 48944997 47753141 47758328 NC_060933.1 CM039042.1 98.25 True local misassembly 48939810 48944997 47758329 47763516 NC_060933.1 CM039042.1 99.36 True local misassembly 48939810 48997180 47763517 47820893 NC_060933.1 CM039042.1 98.8 True relocation, scaffold gap is present, inconsistency = 36313 49033994 49060770 47821394 47848172 NC_060933.1 CM039042.1 99.72 True local misassembly 49065131 49067570 47848173 47850602 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = 24714 49092285 49157961 47850603 47915759 NC_060933.1 CM039042.1 98.53 True local misassembly 49156302 49157977 47915760 47917435 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 49157983 49158817 47917436 47918270 NC_060933.1 CM039042.1 100.0 True local misassembly 49159326 49160305 47918774 47919753 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49160306 49160847 47919759 47920300 NC_060933.1 CM039042.1 99.82 True local misassembly 49162854 49176195 47920317 47933603 NC_060933.1 CM039042.1 98.99 True relocation, inconsistency = 16238 49199246 49201036 47940416 47942231 NC_060933.1 CM039042.1 97.85 True local misassembly 49203659 49204210 47943061 47943612 NC_060933.1 CM039042.1 99.64 True local misassembly 49206235 49207123 47945527 47946415 NC_060933.1 CM039042.1 99.78 True relocation, inconsistency = 119193 49332199 49336983 47952298 47957102 NC_060933.1 CM039042.1 96.08 True relocation, inconsistency = -149997 49186987 49197359 47957103 47967420 NC_060933.1 CM039042.1 98.75 True local misassembly 49193603 49224014 47967421 47997747 NC_060933.1 CM039042.1 99.2 True local misassembly 49227788 49240199 47997748 48010154 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = -16211 49223989 49308137 48010155 48094347 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = 10112 49318250 49360967 48094348 48136865 NC_060933.1 CM039042.1 98.86 True local misassembly 49365379 49366263 48136866 48137750 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49366264 49367317 48137756 48138809 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 49367473 49368320 48138975 48139822 NC_060933.1 CM039042.1 100.0 True local misassembly 49369460 49370528 48141222 48142290 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = -15961 49357600 49358941 48145323 48146664 NC_060933.1 CM039042.1 99.78 True local misassembly 49359585 49361147 48147383 48148939 NC_060933.1 CM039042.1 99.36 True fake: not a misassembly (possible transposable element) 51441824 51442911 48148940 48150027 NC_060933.1 CM039042.1 99.77 True fake: not a misassembly (possible transposable element) 49359585 49361147 48150028 48151590 NC_060933.1 CM039042.1 99.11 True fake: not a misassembly (possible transposable element) 51441824 51442911 48151591 48152673 NC_060933.1 CM039042.1 99.31 True fake: not a misassembly (possible transposable element) 49359585 49361147 48152674 48154256 NC_060933.1 CM039042.1 98.42 True fake: not a misassembly (possible transposable element) 51441819 51442911 48154257 48155354 NC_060933.1 CM039042.1 99.39 True fake: not a misassembly (possible transposable element) 49359585 49361147 48155355 48156907 NC_060933.1 CM039042.1 99.1 True fake: not a misassembly (possible transposable element) 51441824 51442911 48156908 48157995 NC_060933.1 CM039042.1 99.77 True fake: not a misassembly (possible transposable element) 49359585 49361147 48157996 48159558 NC_060933.1 CM039042.1 99.74 True fake: not a misassembly (possible transposable element) 51441824 51442911 48159559 48160646 NC_060933.1 CM039042.1 99.62 True fake: not a misassembly (possible transposable element) 49359585 49360898 48160647 48161960 NC_060933.1 CM039042.1 99.77 True local misassembly 49366850 49381980 48161961 48177066 NC_060933.1 CM039042.1 99.2 True local misassembly 49383164 49392898 48177067 48186676 NC_060933.1 CM039042.1 97.9 True local misassembly 49388908 49389412 48187158 48187662 NC_060933.1 CM039042.1 97.82 True relocation, inconsistency = 2077577 51471911 51472494 48192584 48193167 NC_060933.1 CM039042.1 99.14 True local misassembly 51474546 51475123 48199027 48199604 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 51475129 51476082 48199605 48200558 NC_060933.1 CM039042.1 99.48 True local misassembly 51473044 51474006 48200635 48201581 NC_060933.1 CM039042.1 96.38 True local misassembly 51472062 51472724 48204014 48204676 NC_060933.1 CM039042.1 99.55 True local misassembly 51473652 51474151 48205619 48206118 NC_060933.1 CM039042.1 99.6 True local misassembly 51474546 51475123 48206119 48206696 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 51475124 51476177 48206702 48207755 NC_060933.1 CM039042.1 99.53 True local misassembly 51476726 51477719 48208274 48209267 NC_060933.1 CM039042.1 99.7 True indel: stretch of mismatches 51477895 51478743 48209443 48210291 NC_060933.1 CM039042.1 99.41 True indel: indel (<= 5bp) 51478749 51479358 48210292 48210901 NC_060933.1 CM039042.1 99.51 True indel: indel (<= 5bp) 51479364 51480983 48210902 48212521 NC_060933.1 CM039042.1 99.38 True local misassembly 51480497 51483631 48213892 48217071 NC_060933.1 CM039042.1 97.06 True local misassembly 51483501 51489804 48218128 48224412 NC_060933.1 CM039042.1 97.89 True relocation, inconsistency = -7821 51481984 51483631 48224413 48226070 NC_060933.1 CM039042.1 97.25 True local misassembly 51483501 51491112 48227491 48235278 NC_060933.1 CM039042.1 95.8 True local misassembly 51491233 51494513 48236163 48239473 NC_060933.1 CM039042.1 97.6 True relocation, inconsistency = 7102 51501643 51506401 48239501 48244239 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = -2113529 49392873 49410376 48244240 48261778 NC_060933.1 CM039042.1 99.28 True local misassembly 49411790 49412346 48261779 48262335 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49412616 49415080 48262600 48265064 NC_060933.1 CM039042.1 99.88 True local misassembly 49415833 49416358 48265802 48266327 NC_060933.1 CM039042.1 100.0 True local misassembly 49422014 49422803 48266328 48267117 NC_060933.1 CM039042.1 99.75 True indel: indel (<= 5bp) 49422804 49423783 48267123 48268102 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 49423879 49424407 48268183 48268711 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 49424408 49425141 48268732 48269465 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 49425142 49425690 48269471 48270019 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 49425691 49427482 48270025 48271816 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 49427488 49428085 48271817 48272414 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 2115905 51544096 51547853 48272520 48276332 NC_060933.1 CM039042.1 97.41 True relocation, inconsistency = -2094665 49453189 49453925 48276333 48277069 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 49454436 49455452 48277565 48278581 NC_060933.1 CM039042.1 99.71 True indel: indel (<= 5bp) 49455458 49457086 48278582 48280210 NC_060933.1 CM039042.1 99.69 True indel: indel (<= 5bp) 49457087 49458243 48280216 48281372 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 49458249 49458760 48281373 48281884 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49458761 49459927 48281890 48283056 NC_060933.1 CM039042.1 100.0 True local misassembly 49464823 49466133 48283456 48284766 NC_060933.1 CM039042.1 99.92 True local misassembly 49467718 49469121 48286361 48287764 NC_060933.1 CM039042.1 99.93 True indel: stretch of mismatches 49469376 49470219 48288019 48288862 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 49470220 49471068 48288878 48289726 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 10542 49481686 49521708 48289802 48329470 NC_060933.1 CM039042.1 98.3 True local misassembly 49526879 49531230 48329471 48333847 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 2065037 51597072 51597921 48334652 48335501 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 51597922 51598518 48335512 48336108 NC_060933.1 CM039042.1 99.66 True local misassembly 51599095 51599879 48336675 48337459 NC_060933.1 CM039042.1 99.62 True local misassembly 51600668 51601196 48338213 48338741 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = -2064820 49536377 49539467 48338742 48341812 NC_060933.1 CM039042.1 99.16 True indel: stretch of mismatches 49539468 49547540 48341813 48349925 NC_060933.1 CM039042.1 97.85 True local misassembly 49545540 49554537 48349926 48358948 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = 2058444 51612982 51616159 48358949 48362136 NC_060933.1 CM039042.1 98.92 True relocation, inconsistency = -27048 51589143 51607969 48362168 48380789 NC_060933.1 CM039042.1 95.81 True relocation, inconsistency = -2068194 49539776 49557346 48380790 48398248 NC_060933.1 CM039042.1 97.8 True local misassembly 49552856 49554506 48398249 48399899 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = -8977 49545530 49554531 48399900 48408926 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = 2054048 51608580 51619889 48408927 48420181 NC_060933.1 CM039042.1 97.84 True relocation, inconsistency = 12829 51632719 51647501 48420182 48435144 NC_060933.1 CM039042.1 96.6 True relocation, inconsistency = -7511 51639991 51641809 48435145 48437023 NC_060933.1 CM039042.1 96.04 True relocation, inconsistency = -2070582 49572180 49579284 48437976 48445085 NC_060933.1 CM039042.1 97.49 True relocation, inconsistency = 9360 49588645 49603376 48445086 48459807 NC_060933.1 CM039042.1 98.79 True local misassembly 49604614 49640243 48459808 48495611 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = -10808 49629436 49657040 48495612 48523421 NC_060933.1 CM039042.1 97.87 True relocation, inconsistency = 8454 49665495 49677072 48523422 48535014 NC_060933.1 CM039042.1 99.66 True local misassembly 49671747 49680646 48535015 48543914 NC_060933.1 CM039042.1 99.47 True local misassembly 49675173 49687919 48543915 48556696 NC_060933.1 CM039042.1 99.01 True local misassembly 49682836 49684746 48556697 48558562 NC_060933.1 CM039042.1 98.58 True relocation, inconsistency = 2098745 51783492 51798998 48558563 48573879 NC_060933.1 CM039042.1 96.55 True relocation, inconsistency = -7409 51791590 51804534 48573880 48586734 NC_060933.1 CM039042.1 97.71 True relocation, inconsistency = -2088813 49715750 49719681 48586763 48590694 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 49719682 49720370 48590700 48591388 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 49720824 49723424 48591832 48594432 NC_060933.1 CM039042.1 99.73 True indel: stretch of mismatches 49723870 49724683 48594878 48595691 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49724689 49725772 48595692 48596775 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 49726206 49726716 48597209 48597719 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 49726717 49729385 48597730 48600398 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 49729386 49730816 48600404 48601834 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 49731206 49731800 48602234 48602828 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 49731806 49732558 48602829 48603581 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 49732909 49733422 48603917 48604430 NC_060933.1 CM039042.1 99.61 True local misassembly 49733583 49734559 48604431 48605407 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 49734706 49736666 48605554 48607514 NC_060933.1 CM039042.1 99.95 True indel: indel (> 5bp) 49736677 49737266 48607515 48608104 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 49737267 49738957 48608115 48609805 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 49738963 49739555 48609806 48610398 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 49739561 49740404 48610399 48611242 NC_060933.1 CM039042.1 99.64 True local misassembly 49740950 49742259 48611813 48613122 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 49742265 49742764 48613123 48613622 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 49743099 49744082 48613947 48614930 NC_060933.1 CM039042.1 99.9 True local misassembly 49746832 49749510 48615045 48617723 NC_060933.1 CM039042.1 99.93 True indel: indel (<= 5bp) 49749511 49750362 48617729 48618580 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 49750363 49752264 48618586 48620487 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 2082446 51835101 51840916 48620878 48626743 NC_060933.1 CM039042.1 96.44 True local misassembly 51836055 51838255 48626744 48628900 NC_060933.1 CM039042.1 96.84 True relocation, inconsistency = -2085204 49753613 49775678 48629462 48651601 NC_060933.1 CM039042.1 99.0 True local misassembly 49769478 49775604 48651602 48657782 NC_060933.1 CM039042.1 98.8 True local misassembly 49777257 49825432 48657783 48706303 NC_060933.1 CM039042.1 97.79 True relocation, inconsistency = 1005564 50830997 50832356 48706304 48707663 NC_060933.1 CM039042.1 96.45 True relocation, inconsistency = -311238 50521119 50563721 48707664 48750331 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = -650534 49913188 49919272 48750332 48756341 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 1987516 51906813 51907746 48756366 48757304 NC_060933.1 CM039042.1 97.54 True relocation, inconsistency = -1977302 49930445 49952933 48757305 48779773 NC_060933.1 CM039042.1 99.14 True relocation, inconsistency = 9481 49962415 49971611 48779774 48788940 NC_060933.1 CM039042.1 99.12 True relocation, inconsistency = 1623944 51595581 51596133 48789493 48788941 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 949450 50629956 50646130 48789494 48805728 NC_060933.1 CM039042.1 99.13 True relocation, inconsistency = -376415 50269716 50270479 48805729 48806492 NC_060933.1 CM039042.1 99.75 True indel: indel (<= 5bp) 50270485 50271109 48806493 48807117 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 50271110 50272611 48807128 48808629 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 50272617 50274570 48808630 48810583 NC_060933.1 CM039042.1 99.95 True indel: indel (<= 5bp) 50274571 50276781 48810589 48812799 NC_060933.1 CM039042.1 99.91 True relocation, inconsistency = 12565 50289347 50289875 48812800 48813328 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 50289876 50290489 48813334 48813947 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 50290490 50296585 48813958 48820053 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 50296813 50297325 48820291 48820803 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 50297327 50299327 48820804 48822804 NC_060933.1 CM039042.1 99.95 True indel: indel (> 5bp) 50299328 50303881 48822855 48827408 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 50304207 50304874 48827774 48828441 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 50304875 50305708 48828447 48829280 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 375895 50682198 50710396 48829875 48858233 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = -777288 49933109 49938035 48858234 48863175 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = 394909 50332945 50341060 48863176 48871316 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = -114737 50227395 50227907 48872388 48872900 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 50227970 50228880 48872953 48873863 NC_060933.1 CM039042.1 99.67 True indel: indel (<= 5bp) 50228881 50229524 48873869 48874512 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = -193190 50036649 50059775 48874827 48897973 NC_060933.1 CM039042.1 99.09 True local misassembly 50053852 50059205 48897974 48903337 NC_060933.1 CM039042.1 98.96 True fake: not a misassembly (possible transposable element) 50892805 50893373 48904689 48905257 NC_060933.1 CM039042.1 99.3 True fake: not a misassembly (possible transposable element) 50059768 50092254 48906240 48938581 NC_060933.1 CM039042.1 98.76 True relocation, inconsistency = -83476 50008890 50010603 48938693 48940416 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = -210958 49799646 49815953 48940417 48956789 NC_060933.1 CM039042.1 96.5 True relocation, inconsistency = 986481 50802698 50815579 48957053 48969859 NC_060933.1 CM039042.1 98.49 True relocation, inconsistency = 12652 50828232 50843565 48969860 48985318 NC_060933.1 CM039042.1 98.34 True indel: indel (> 5bp) 50843613 50849105 48985386 48990883 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = -544358 50304748 50313861 48990884 48999492 NC_060933.1 CM039042.1 95.3 True relocation, inconsistency = 543339 50857201 50880374 48999493 49022671 NC_060933.1 CM039042.1 99.5 True relocation, inconsistency = -827976 50052399 50054278 49022672 49024551 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 1943354 51997633 52002949 49024552 49029903 NC_060933.1 CM039042.1 97.31 True relocation, inconsistency = -66494 51936456 51937810 49029904 49031243 NC_060933.1 CM039042.1 98.1 True local misassembly 51933669 51938516 49031244 49036111 NC_060933.1 CM039042.1 98.3 True relocation, inconsistency = -1583809 50354708 50356802 49036112 49038200 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = -299377 50057426 50058479 49038201 49039259 NC_060933.1 CM039042.1 98.83 True local misassembly 50059768 50060796 49040831 49042009 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = 560305 50621102 50640401 49042010 49061550 NC_060933.1 CM039042.1 97.43 True relocation, inconsistency = 260741 50901143 50915531 49061551 49075745 NC_060933.1 CM039042.1 97.07 True local misassembly 50912002 50921228 49075746 49084957 NC_060933.1 CM039042.1 99.65 True fake: not a misassembly (possible transposable element) 50912868 50915440 49084958 49087520 NC_060933.1 CM039042.1 99.34 True fake: not a misassembly (possible transposable element) 50927561 50941945 49087521 49101960 NC_060933.1 CM039042.1 98.89 True local misassembly 50938806 50967649 49103140 49132198 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = 1086587 52054237 52068419 49132199 49146501 NC_060933.1 CM039042.1 97.53 True relocation, inconsistency = -1099083 50974981 50975773 49152146 49152938 NC_060933.1 CM039042.1 99.5 True indel: indel (<= 5bp) 50975779 50976598 49152939 49153758 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 15160574 66137589 66138442 49154175 49155008 NC_060933.1 CM039042.1 95.78 True relocation, inconsistency = -14068628 52069971 52073021 49155165 49158195 NC_060933.1 CM039042.1 96.11 True local misassembly 52073049 52089704 49158668 49174914 NC_060933.1 CM039042.1 95.96 True relocation, inconsistency = 8708844 60807474 60808032 49183840 49184393 NC_060933.1 CM039042.1 97.66 True relocation, inconsistency = -9814865 50993168 51012041 49184394 49203072 NC_060933.1 CM039042.1 98.33 True local misassembly 51014664 51054331 49203073 49242710 NC_060933.1 CM039042.1 98.91 True local misassembly 51059595 51061151 49242711 49244302 NC_060933.1 CM039042.1 97.44 True local misassembly 51059006 51059698 49244579 49245271 NC_060933.1 CM039042.1 99.71 True local misassembly 51062355 51062895 49248068 49248608 NC_060933.1 CM039042.1 97.97 True relocation, inconsistency = -8143 51058420 51058990 49252276 49252846 NC_060933.1 CM039042.1 98.95 True local misassembly 51063005 51086220 49253306 49276561 NC_060933.1 CM039042.1 98.93 True local misassembly 51086176 51096754 49277855 49288444 NC_060933.1 CM039042.1 99.28 True local misassembly 51090055 51113456 49288445 49311811 NC_060933.1 CM039042.1 99.19 True relocation, inconsistency = -17950 51097351 51100379 49313656 49316679 NC_060933.1 CM039042.1 99.41 True relocation, inconsistency = 42620 51143681 51144708 49317361 49318388 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 51144709 51145323 49318409 49319023 NC_060933.1 CM039042.1 99.84 True local misassembly 51145324 51146196 49319877 49320749 NC_060933.1 CM039042.1 99.66 True local misassembly 51146197 51146733 49320865 49321401 NC_060933.1 CM039042.1 99.81 True local misassembly 51146861 51147578 49321788 49322505 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 51147589 51154212 49322506 49329129 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 51154458 51156733 49329390 49331665 NC_060933.1 CM039042.1 99.96 True indel: indel (<= 5bp) 51156734 51159027 49331671 49333964 NC_060933.1 CM039042.1 99.89 True local misassembly 51164081 51180008 49333965 49349951 NC_060933.1 CM039042.1 99.08 True local misassembly 51182127 51203435 49350008 49371546 NC_060933.1 CM039042.1 98.28 True local misassembly 51202842 51235952 49371591 49404896 NC_060933.1 CM039042.1 97.82 True relocation, inconsistency = 7980 51243933 51249441 49404897 49410400 NC_060933.1 CM039042.1 98.1 True local misassembly 51250192 51250700 49410821 49411329 NC_060933.1 CM039042.1 99.02 True indel: indel (> 5bp) 51250933 51251604 49411587 49412258 NC_060933.1 CM039042.1 97.92 True relocation, inconsistency = 8097 51261287 51262013 49413844 49414570 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 51262058 51263111 49414600 49415653 NC_060933.1 CM039042.1 99.43 True indel: stretch of mismatches 51263503 51264155 49416045 49416697 NC_060933.1 CM039042.1 99.69 True indel: indel (<= 5bp) 51264161 51265234 49416698 49417771 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 51265575 51266917 49418107 49419449 NC_060933.1 CM039042.1 99.73 True fake: not a misassembly (possible transposable element) 51309068 51313487 49419450 49423899 NC_060933.1 CM039042.1 98.7 True fake: not a misassembly (possible transposable element) 51265634 51266917 49423900 49425183 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = 42150 51309068 51343215 49425184 49459495 NC_060933.1 CM039042.1 98.49 True local misassembly 51343194 51350277 49461893 49469046 NC_060933.1 CM039042.1 98.33 True fake: not a misassembly (possible transposable element) 49222095 49223527 49469056 49470518 NC_060933.1 CM039042.1 96.2 True fake: not a misassembly (possible transposable element) 51351843 51355440 49472001 49475578 NC_060933.1 CM039042.1 98.95 True relocation, inconsistency = -8755 51346686 51350277 49475579 49479230 NC_060933.1 CM039042.1 97.46 True fake: not a misassembly (possible transposable element) 49222095 49223527 49479240 49480702 NC_060933.1 CM039042.1 96.2 True fake: not a misassembly (possible transposable element) 51351843 51372071 49482185 49502414 NC_060933.1 CM039042.1 99.14 True relocation, inconsistency = -2115852 49256220 49261514 49502415 49507710 NC_060933.1 CM039042.1 96.53 True local misassembly 49258564 49278480 49507711 49528113 NC_060933.1 CM039042.1 96.11 True relocation, inconsistency = 53264 49331745 49337074 49528114 49533428 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = 1991170 51328246 51343215 49533430 49548538 NC_060933.1 CM039042.1 98.28 True local misassembly 51343194 51356544 49550971 49564301 NC_060933.1 CM039042.1 99.09 True local misassembly 51355855 51380224 49564302 49588671 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = -2124858 49255367 49261681 49588672 49594987 NC_060933.1 CM039042.1 96.69 True local misassembly 49258721 49260518 49594988 49596781 NC_060933.1 CM039042.1 98.37 True local misassembly 49266183 49266915 49596782 49597514 NC_060933.1 CM039042.1 99.74 True indel: indel (> 5bp) 49267392 49268117 49598006 49598731 NC_060933.1 CM039042.1 99.72 True local misassembly 49268639 49269412 49599243 49600016 NC_060933.1 CM039042.1 99.48 True indel: indel (> 5bp) 49269602 49270669 49600181 49601248 NC_060933.1 CM039042.1 99.81 True local misassembly 49271387 49272052 49601956 49602621 NC_060933.1 CM039042.1 99.7 True indel: indel (> 5bp) 49272493 49273197 49603107 49603811 NC_060933.1 CM039042.1 99.57 True local misassembly 49274131 49275001 49605135 49606005 NC_060933.1 CM039042.1 99.54 True indel: indel (> 5bp) 49275002 49275720 49606016 49606734 NC_060933.1 CM039042.1 99.17 True local misassembly 49277219 49278466 49608278 49609525 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 2096237 51374704 51418744 49609526 49653382 NC_060933.1 CM039042.1 98.21 True relocation, inconsistency = -2074494 49344761 49346153 49653893 49655285 NC_060933.1 CM039042.1 99.57 True indel: stretch of mismatches 49346413 49347528 49655545 49656660 NC_060933.1 CM039042.1 99.91 True indel: indel (> 5bp) 49348009 49348727 49657160 49657878 NC_060933.1 CM039042.1 99.44 True indel: indel (> 5bp) 49349168 49350270 49658344 49659446 NC_060933.1 CM039042.1 99.82 True local misassembly 49351148 49351728 49660309 49660889 NC_060933.1 CM039042.1 99.66 True indel: indel (<= 5bp) 49351734 49353102 49660890 49662258 NC_060933.1 CM039042.1 99.56 True indel: stretch of mismatches 49353198 49353818 49662354 49662974 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = 2067579 51422060 51435915 49663637 49677470 NC_060933.1 CM039042.1 98.89 True relocation, inconsistency = -2074372 49361544 49383298 49677471 49699055 NC_060933.1 CM039042.1 96.91 True local misassembly 49384382 49391373 49699056 49706177 NC_060933.1 CM039042.1 96.89 True relocation, inconsistency = 2075388 51466813 51480469 49706229 49719865 NC_060933.1 CM039042.1 99.18 True local misassembly 51479476 51481665 49719866 49722060 NC_060933.1 CM039042.1 98.88 True relocation, inconsistency = 10543904 62025570 62028629 49725149 49722061 NC_060933.1 CM039042.1 98.06 True relocation, inconsistency = 10525714 51495803 51499337 49725668 49729192 NC_060933.1 CM039042.1 99.66 True local misassembly 51503171 51504153 49729303 49730285 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 51504159 51507503 49730286 49733630 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 51507509 51508702 49733631 49734824 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 51509122 51510958 49735239 49737075 NC_060933.1 CM039042.1 99.84 True local misassembly 51516663 51518924 49738030 49740291 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 51518925 51519752 49740297 49741124 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 51519758 51520807 49741125 49742174 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 51520808 51521762 49742195 49743149 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 51521763 51524996 49743155 49746388 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 51525355 51526909 49746752 49748306 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 51526915 51527462 49748307 49748854 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 51527468 51530332 49748855 49751719 NC_060933.1 CM039042.1 99.9 True local misassembly 51531088 51532829 49752475 49754216 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 51532835 51533452 49754217 49754834 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 51533453 51534650 49754910 49756107 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 51534651 51535415 49756118 49756882 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 51535426 51536269 49756883 49757726 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 51536270 51536904 49757737 49758371 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 51536905 51538124 49758377 49759596 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 51538454 51539933 49759936 49761415 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 51539934 51541445 49761421 49762932 NC_060933.1 CM039042.1 99.74 True indel: indel (<= 5bp) 51541451 51543066 49762933 49764548 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 51543535 51544075 49765032 49765572 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 51544076 51545292 49765578 49766794 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 23011 51568914 51576265 49767405 49774806 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = -25337 51550929 51573265 49774807 49797160 NC_060933.1 CM039042.1 98.9 True local misassembly 51570446 51596156 49797161 49822796 NC_060933.1 CM039042.1 98.53 True relocation, inconsistency = -7755 51588402 51599144 49822797 49833489 NC_060933.1 CM039042.1 98.73 True local misassembly 51600029 51623931 49833490 49857357 NC_060933.1 CM039042.1 98.83 True local misassembly 51630656 51631612 49857358 49858329 NC_060933.1 CM039042.1 97.2 True relocation, inconsistency = -7691 51623922 51633457 49858330 49867860 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = -9633 51623922 51633457 49867958 49877478 NC_060933.1 CM039042.1 99.42 True local misassembly 51636826 51639719 49877479 49880337 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = 9950 51649670 51655675 49880338 49886293 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = -20472 51635204 51641941 49886294 49893161 NC_060933.1 CM039042.1 96.53 True local misassembly 51647177 51660163 49893162 49906397 NC_060933.1 CM039042.1 96.93 True relocation, inconsistency = -2070386 49589778 49592482 49906398 49909134 NC_060933.1 CM039042.1 97.54 True relocation, inconsistency = 18892039 68484523 68485315 49909923 49909136 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = 16819545 51660144 51664404 49910497 49914697 NC_060933.1 CM039042.1 97.73 True local misassembly 51666867 51667652 49914698 49915483 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 1321063 50344046 50344778 49917251 49916509 NC_060933.1 CM039042.1 97.44 True relocation, inconsistency = -371293 50713764 50714472 49918846 49918118 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = 1112318 49594106 49596367 49923925 49926191 NC_060933.1 CM039042.1 97.68 True relocation, inconsistency = 2086062 51682430 51683864 49926192 49927636 NC_060933.1 CM039042.1 98.56 True local misassembly 51688214 51690580 49927692 49930053 NC_060933.1 CM039042.1 99.58 True relocation, inconsistency = -9368 51681348 51682889 49930189 49931730 NC_060933.1 CM039042.1 99.35 True indel: stretch of mismatches 51682980 51690580 49931821 49939496 NC_060933.1 CM039042.1 98.32 True local misassembly 51691938 51699446 49941069 49948582 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = 50492 51749939 51769632 49948583 49968241 NC_060933.1 CM039042.1 99.39 True relocation, inconsistency = 9299 51778932 51808625 49968242 49998015 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = 13416 51822042 51838631 49998016 50014615 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = 8124 51846756 51854278 50014616 50022118 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = -2090503 49766712 49767502 50025055 50025830 NC_060933.1 CM039042.1 95.16 True local misassembly 49771766 49779170 50025831 50033235 NC_060933.1 CM039042.1 98.48 True relocation, inconsistency = 322799 50102770 50103746 50034036 50035023 NC_060933.1 CM039042.1 96.58 True fake: not a misassembly (possible transposable element) 50408131 50412487 50035775 50040141 NC_060933.1 CM039042.1 97.17 True fake: not a misassembly (possible transposable element) 50112236 50112811 50042424 50042999 NC_060933.1 CM039042.1 99.31 True local misassembly 50113607 50114267 50043839 50044499 NC_060933.1 CM039042.1 99.39 True indel: indel (<= 5bp) 50114273 50114971 50044500 50045198 NC_060933.1 CM039042.1 98.71 True local misassembly 50115366 50116130 50045468 50046232 NC_060933.1 CM039042.1 99.61 True indel: indel (<= 5bp) 50116136 50116884 50046233 50046981 NC_060933.1 CM039042.1 99.6 True local misassembly 50117599 50118312 50047721 50048434 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 304640 50422953 50432158 50048435 50057615 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 1431693 51864646 51866266 50058410 50060030 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 51866267 51866828 50060036 50060597 NC_060933.1 CM039042.1 99.64 True indel: indel (> 5bp) 51867288 51867834 50061037 50061583 NC_060933.1 CM039042.1 100.0 True local misassembly 51870966 51871900 50061796 50062730 NC_060933.1 CM039042.1 99.89 True indel: stretch of mismatches 51872061 51872629 50062891 50063459 NC_060933.1 CM039042.1 99.82 True indel: stretch of mismatches 51873028 51874221 50063858 50065051 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 12160 51886382 51917757 50065052 50096897 NC_060933.1 CM039042.1 97.69 True relocation, inconsistency = -1565825 50351933 50366151 50096898 50111096 NC_060933.1 CM039042.1 97.33 True relocation, inconsistency = 1630782 51996934 52032881 50111097 50147139 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = -1092831 50940068 50955744 50147157 50162724 NC_060933.1 CM039042.1 96.98 True relocation, inconsistency = 9789637 60745382 60753403 50162725 50170816 NC_060933.1 CM039042.1 97.24 True relocation, inconsistency = -8686068 52069006 52089704 50172487 50193625 NC_060933.1 CM039042.1 96.88 True local misassembly 52089827 52090670 50195787 50196630 NC_060933.1 CM039042.1 99.76 True indel: indel (<= 5bp) 52090671 52091610 50196636 50197575 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 52091616 52093103 50197576 50199063 NC_060933.1 CM039042.1 99.93 True indel: indel (<= 5bp) 52093109 52094128 50199064 50200083 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52094262 52095119 50200267 50201124 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 52095295 52096055 50201320 50202080 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 52096224 52097731 50202254 50203761 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 52097966 52098632 50203986 50204652 NC_060933.1 CM039042.1 99.85 True local misassembly 52104820 52107706 50205038 50207924 NC_060933.1 CM039042.1 99.93 True indel: indel (<= 5bp) 52107712 52108738 50207925 50208951 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 52108744 52109589 50208952 50209797 NC_060933.1 CM039042.1 99.41 True indel: indel (<= 5bp) 52109595 52110096 50209798 50210299 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 52110102 52110740 50210300 50210938 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 52110861 52111633 50211069 50211841 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 52111639 52113200 50211842 50213403 NC_060933.1 CM039042.1 99.81 True indel: stretch of mismatches 52113622 52114151 50213825 50214354 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 52114157 52116352 50214355 50216550 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 52116619 52117315 50216822 50217518 NC_060933.1 CM039042.1 99.86 True local misassembly 52118237 52118759 50218425 50218947 NC_060933.1 CM039042.1 99.62 True local misassembly 52119887 52120964 50220100 50221177 NC_060933.1 CM039042.1 99.54 True indel: indel (> 5bp) 52120975 52121787 50221178 50221990 NC_060933.1 CM039042.1 99.51 True indel: indel (<= 5bp) 52121893 52122631 50222101 50222839 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52122637 52123307 50222840 50223510 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 52123318 52124239 50223511 50224432 NC_060933.1 CM039042.1 99.67 True indel: indel (<= 5bp) 52124245 52126674 50224433 50226862 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 52126680 52127525 50226863 50227708 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52127531 52128514 50227709 50228692 NC_060933.1 CM039042.1 99.7 True indel: indel (> 5bp) 52128525 52131455 50228693 50231623 NC_060933.1 CM039042.1 99.9 True local misassembly 52132289 52133035 50232462 50233208 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52133041 52137158 50233209 50237326 NC_060933.1 CM039042.1 99.85 True indel: stretch of mismatches 52137624 52139789 50237792 50239957 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 52139795 52140748 50239958 50240911 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52140749 52141971 50240917 50242139 NC_060933.1 CM039042.1 99.75 True indel: stretch of mismatches 52142067 52143065 50242235 50243233 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 52143066 52144737 50243239 50244910 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 11963 52156706 52157734 50244916 50245944 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 52157735 52158733 50245950 50246948 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52159158 52160995 50247363 50249200 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 52161254 52162134 50249449 50250329 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 52162140 52162783 50250330 50250973 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52162794 52164193 50250974 50252373 NC_060933.1 CM039042.1 99.43 True indel: indel (> 5bp) 52164204 52165402 50252374 50253572 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 52165653 52167884 50253818 50256049 NC_060933.1 CM039042.1 99.78 True indel: indel (> 5bp) 52167956 52170282 50256115 50258441 NC_060933.1 CM039042.1 99.87 True local misassembly 52175634 52176375 50258442 50259183 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52176381 52177842 50259184 50260645 NC_060933.1 CM039042.1 100.0 True local misassembly 52178442 52181256 50261240 50264054 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 52181262 52183841 50264055 50266634 NC_060933.1 CM039042.1 99.77 True local misassembly 52186975 52188688 50266635 50268378 NC_060933.1 CM039042.1 96.58 True local misassembly 52195968 52209985 50269578 50283575 NC_060933.1 CM039042.1 99.38 True relocation, inconsistency = 8695705 60905691 60910823 50283576 50288708 NC_060933.1 CM039042.1 98.8 True relocation, inconsistency = -9715480 51195344 51208474 50288709 50301964 NC_060933.1 CM039042.1 97.53 True relocation, inconsistency = -11004 51197471 51201505 50301965 50305954 NC_060933.1 CM039042.1 97.69 True relocation, inconsistency = 1011912 52213418 52219398 50305955 50311900 NC_060933.1 CM039042.1 98.56 True local misassembly 52215114 52221330 50311901 50318102 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = -11365 52209966 52232844 50318103 50340956 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = 17219580 69452425 69453957 50340957 50342529 NC_060933.1 CM039042.1 96.62 True relocation, inconsistency = -17235083 52219248 52232844 50342903 50356489 NC_060933.1 CM039042.1 99.08 True fake: not a misassembly (possible transposable element) 57755236 57756332 50357571 50356490 NC_060933.1 CM039042.1 97.05 True fake: not a misassembly (possible transposable element) 52232817 52243075 50358524 50369073 NC_060933.1 CM039042.1 95.71 True fake: not a misassembly (possible transposable element) 64264302 64267425 50372157 50369074 NC_060933.1 CM039042.1 95.86 True fake: not a misassembly (possible transposable element) 52243486 52244104 50372158 50372766 NC_060933.1 CM039042.1 98.13 True local misassembly 52245114 52246171 50372767 50373819 NC_060933.1 CM039042.1 97.93 True fake: not a misassembly (possible transposable element) 64265315 64267609 50376164 50373880 NC_060933.1 CM039042.1 95.77 True fake: not a misassembly (possible transposable element) 52242488 52269639 50376165 50403367 NC_060933.1 CM039042.1 99.18 True local misassembly 52273024 52328539 50403368 50459193 NC_060933.1 CM039042.1 98.77 True local misassembly 52326137 52348830 50459194 50481912 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 8741105 61090639 61092891 50482616 50484818 NC_060933.1 CM039042.1 97.51 True local misassembly 61092502 61111837 50485277 50504272 NC_060933.1 CM039042.1 97.38 True local misassembly 61111926 61147943 50504496 50540488 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = 13461802 74611454 74617394 50548072 50542197 NC_060933.1 CM039042.1 97.27 True relocation, inconsistency = 13442093 61147978 61166168 50551265 50569856 NC_060933.1 CM039042.1 97.1 True relocation, inconsistency = -28906 61137263 61137921 50569857 50570515 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = -8712876 52425343 52436739 50570813 50582194 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 8732501 61169241 61200537 50582195 50613616 NC_060933.1 CM039042.1 99.03 True fake: not a misassembly (possible transposable element) 52456050 52461548 50616536 50622019 NC_060933.1 CM039042.1 99.69 True fake: not a misassembly (possible transposable element) 61202713 61220916 50622045 50640203 NC_060933.1 CM039042.1 98.79 True local misassembly 61214485 61217161 50640549 50643225 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 61217217 61218428 50643226 50644437 NC_060933.1 CM039042.1 99.75 True indel: indel (<= 5bp) 61218429 61219812 50644443 50645826 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 61219968 61220510 50646017 50646559 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 61220511 61222473 50646570 50648532 NC_060933.1 CM039042.1 99.64 True indel: indel (<= 5bp) 61222479 61224032 50648533 50650086 NC_060933.1 CM039042.1 99.49 True local misassembly 61224656 61225280 50655789 50656413 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 61225281 61226005 50656419 50657143 NC_060933.1 CM039042.1 99.72 True indel: indel (<= 5bp) 61226006 61226983 50657149 50658126 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 61226989 61228262 50658127 50659400 NC_060933.1 CM039042.1 99.92 True indel: indel (> 5bp) 61228263 61229664 50659411 50660812 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 61229841 61230663 50660979 50661801 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 61230977 61231628 50662105 50662756 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = -8743402 52488603 52492822 50663133 50667332 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = 8734952 61227775 61256440 50667333 50695998 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = 9973265 71230326 71232457 50698731 50696619 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = 603524 70625995 70626607 50699533 50698926 NC_060933.1 CM039042.1 98.69 True relocation, inconsistency = 10173488 60449747 60450514 50701526 50702293 NC_060933.1 CM039042.1 98.57 True local misassembly 60451349 60451872 50703168 50703691 NC_060933.1 CM039042.1 98.09 True indel: indel (<= 5bp) 60452232 60452958 50704056 50704782 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = 15060551 75515201 75516898 50708131 50706474 NC_060933.1 CM039042.1 95.61 True relocation, inconsistency = 13543620 61970653 61971491 50709059 50708221 NC_060933.1 CM039042.1 98.57 True local misassembly 61967582 61968095 50712160 50711647 NC_060933.1 CM039042.1 99.03 True local misassembly 61965646 61966163 50714301 50713784 NC_060933.1 CM039042.1 99.42 True indel: indel (> 5bp) 61963513 61965194 50716424 50714743 NC_060933.1 CM039042.1 98.75 True indel: indel (> 5bp) 61962894 61963492 50717023 50716425 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = -1011362 62967237 62967761 50724042 50723518 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 5708086 68676113 68676831 50724308 50725026 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = 4464772 73142856 73146460 50729928 50726279 NC_060933.1 CM039042.1 95.13 True relocation, inconsistency = -1684733 74817411 74818359 50740111 50739158 NC_060933.1 CM039042.1 95.3 True relocation, inconsistency = 21220407 53594333 53597003 50740112 50742797 NC_060933.1 CM039042.1 96.05 True relocation, inconsistency = 21161677 74764330 74764933 50748447 50749050 NC_060933.1 CM039042.1 99.5 True relocation, inconsistency = -11375350 63390936 63391470 50750403 50750937 NC_060933.1 CM039042.1 99.07 True relocation, inconsistency = 11366952 74764330 74764933 50757448 50756845 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 2405377 72353074 72353755 50763327 50762646 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = 970779 71380892 71382109 50763513 50764735 NC_060933.1 CM039042.1 97.8 True relocation, inconsistency = 1804640 73189557 73190113 50767543 50768099 NC_060933.1 CM039042.1 98.74 True relocation, inconsistency = 8373138 64813116 64816295 50771426 50768223 NC_060933.1 CM039042.1 95.31 True relocation, inconsistency = -9913020 74723480 74724652 50774066 50772910 NC_060933.1 CM039042.1 97.65 True relocation, inconsistency = 595583 74121893 74127896 50780045 50774067 NC_060933.1 CM039042.1 97.16 True relocation, inconsistency = 2734060 71384947 71387085 50780793 50782961 NC_060933.1 CM039042.1 97.19 True local misassembly 71392067 71394806 50783754 50786458 NC_060933.1 CM039042.1 95.88 True local misassembly 71392037 71395234 50787659 50790831 NC_060933.1 CM039042.1 95.65 True relocation, inconsistency = 952917 72349011 72350392 50793092 50791691 NC_060933.1 CM039042.1 95.34 True indel: indel (> 5bp) 72347458 72348634 50794604 50793438 NC_060933.1 CM039042.1 96.21 True relocation, inconsistency = 16981020 55364121 55364956 50796086 50796921 NC_060933.1 CM039042.1 98.44 True local misassembly 55366154 55366890 50798059 50798795 NC_060933.1 CM039042.1 99.19 True relocation, inconsistency = 9794517 65164140 65164779 50801528 50802167 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 8946672 74111759 74113941 50804662 50802475 NC_060933.1 CM039042.1 95.77 True relocation, inconsistency = 10654290 63448991 63456104 50813335 50806027 NC_060933.1 CM039042.1 95.19 True local misassembly 63445595 63446130 50814461 50813926 NC_060933.1 CM039042.1 99.07 True relocation, inconsistency = 134369 63582079 63582810 50816041 50816772 NC_060933.1 CM039042.1 97.95 True indel: indel (> 5bp) 63582841 63583481 50816773 50817413 NC_060933.1 CM039042.1 98.44 True indel: indel (<= 5bp) 63583483 63584015 50817414 50817946 NC_060933.1 CM039042.1 97.56 True relocation, inconsistency = 11114488 74698607 74702716 50818050 50822094 NC_060933.1 CM039042.1 96.26 True local misassembly 74704285 74706616 50823401 50825687 NC_060933.1 CM039042.1 95.63 True relocation, inconsistency = 59935 74767465 74768093 50826601 50827229 NC_060933.1 CM039042.1 99.36 True indel: indel (> 5bp) 74768352 74768951 50827478 50828077 NC_060933.1 CM039042.1 99.5 True local misassembly 74769995 74770729 50829121 50829855 NC_060933.1 CM039042.1 98.91 True local misassembly 74777814 74779053 50830990 50832229 NC_060933.1 CM039042.1 99.44 True indel: indel (> 5bp) 74779337 74780035 50832503 50833201 NC_060933.1 CM039042.1 98.57 True indel: indel (<= 5bp) 74780041 74780597 50833202 50833758 NC_060933.1 CM039042.1 99.46 True relocation, inconsistency = -13521884 61260615 61261177 50835660 50836222 NC_060933.1 CM039042.1 99.64 True indel: indel (<= 5bp) 61261178 61261933 50836228 50836983 NC_060933.1 CM039042.1 100.0 True local misassembly 61262665 61263195 50839008 50839538 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 61263378 61263984 50839731 50840337 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 61263990 61265716 50840338 50842064 NC_060933.1 CM039042.1 99.94 True indel: indel (> 5bp) 61265727 61267025 50842065 50843363 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 61267031 61268181 50843364 50844514 NC_060933.1 CM039042.1 99.74 True indel: indel (<= 5bp) 61268607 61269381 50844945 50845719 NC_060933.1 CM039042.1 100.0 True local misassembly 61269990 61271616 50846328 50847954 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 61271797 61274817 50848125 50851145 NC_060933.1 CM039042.1 99.97 True indel: indel (<= 5bp) 61274823 61275483 50851146 50851806 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 61275533 61276323 50851807 50852597 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 61276324 61277575 50852603 50853854 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 61277581 61278154 50853855 50854428 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 61278304 61280205 50854588 50856489 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 61280317 61281466 50856581 50857730 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 61281661 61282415 50857930 50858684 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 61282561 61283834 50858830 50860103 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 61283995 61284727 50860259 50860991 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = 13587599 74872471 74873074 50861136 50861739 NC_060933.1 CM039042.1 98.84 True indel: indel (> 5bp) 74873260 74873848 50861915 50862503 NC_060933.1 CM039042.1 99.15 True indel: indel (<= 5bp) 74873849 74874378 50862509 50863038 NC_060933.1 CM039042.1 99.62 True local misassembly 74872311 74882850 50863711 50874165 NC_060933.1 CM039042.1 97.08 True relocation, inconsistency = -1217756 73665230 73665922 50874301 50874993 NC_060933.1 CM039042.1 99.57 True indel: indel (> 5bp) 73666069 73666925 50875130 50875986 NC_060933.1 CM039042.1 99.07 True indel: indel (> 5bp) 73666926 73667591 50875997 50876662 NC_060933.1 CM039042.1 99.55 True indel: indel (<= 5bp) 73668007 73668588 50877083 50877664 NC_060933.1 CM039042.1 100.0 True local misassembly 73672458 73673025 50881125 50881692 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = -12384998 61288028 61302578 50881693 50896248 NC_060933.1 CM039042.1 96.48 True relocation, inconsistency = -8681520 52621543 52623170 50896733 50898360 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 52623171 52623839 50898366 50899034 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52623840 52625491 50899045 50900696 NC_060933.1 CM039042.1 99.94 True indel: indel (> 5bp) 52625693 52626661 50900888 50901856 NC_060933.1 CM039042.1 99.79 True local misassembly 52627590 52628164 50902790 50903364 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 52628165 52629376 50903375 50904586 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52629382 52629906 50904587 50905111 NC_060933.1 CM039042.1 99.81 True local misassembly 52630537 52631584 50905747 50906794 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52631709 52632555 50906929 50907775 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52632556 52633330 50907781 50908555 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = -8753 52633820 52635383 50917798 50919361 NC_060933.1 CM039042.1 99.74 True indel: indel (> 5bp) 52635611 52636982 50919519 50920890 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 52637284 52639011 50921201 50922928 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 52639017 52640274 50922929 50924186 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 52640280 52640993 50924187 50924900 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 52641004 52641562 50924901 50925459 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52641568 52642809 50925460 50926701 NC_060933.1 CM039042.1 99.8 True relocation, inconsistency = 21268183 73910993 73913637 50926702 50929301 NC_060933.1 CM039042.1 96.58 True relocation, inconsistency = 22011006 51897431 51898504 50931892 50930784 NC_060933.1 CM039042.1 95.31 True relocation, inconsistency = 9631766 61530511 61531042 50932133 50932664 NC_060933.1 CM039042.1 99.25 True relocation, inconsistency = -8886823 52644861 52697872 50933306 50985583 NC_060933.1 CM039042.1 97.95 True relocation, inconsistency = 8747714 61445587 61446285 50985584 50986282 NC_060933.1 CM039042.1 99.75 True local misassembly 61447406 61447918 50987403 50987915 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 61447924 61449912 50987916 50989904 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 61449938 61451153 50989905 50991120 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 61451169 61451861 50991121 50991813 NC_060933.1 CM039042.1 99.42 True indel: indel (<= 5bp) 61451862 61452558 50991819 50992515 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 61452559 61453522 50992526 50993489 NC_060933.1 CM039042.1 99.69 True indel: indel (> 5bp) 61453684 61463999 50993671 51003941 NC_060933.1 CM039042.1 98.9 True local misassembly 61467400 61522666 51003942 51058988 NC_060933.1 CM039042.1 98.87 True relocation, inconsistency = -8745115 52777652 52778613 51059089 51060050 NC_060933.1 CM039042.1 99.9 True local misassembly 52779233 52779960 51060680 51061407 NC_060933.1 CM039042.1 99.18 True indel: indel (> 5bp) 52780199 52781160 51061636 51062597 NC_060933.1 CM039042.1 99.58 True local misassembly 52781631 52783412 51062598 51064379 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 52783786 52784730 51064748 51065692 NC_060933.1 CM039042.1 99.68 True indel: indel (<= 5bp) 52784736 52785853 51065693 51066810 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52785864 52786528 51066811 51067475 NC_060933.1 CM039042.1 99.7 True indel: indel (> 5bp) 52786644 52787636 51067581 51068573 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 52787801 52788819 51068753 51069771 NC_060933.1 CM039042.1 100.0 True local misassembly 52789325 52790886 51070292 51071853 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 52790912 52791939 51071854 51072881 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 52791940 52792655 51072902 51073617 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 52792729 52793591 51073687 51074549 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 52793860 52795482 51074808 51076430 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 52795488 52796006 51076431 51076949 NC_060933.1 CM039042.1 99.61 True indel: indel (> 5bp) 52796092 52797488 51076950 51078346 NC_060933.1 CM039042.1 100.0 True local misassembly 52798952 52800707 51078347 51080102 NC_060933.1 CM039042.1 99.6 True relocation, inconsistency = 12142095 64944436 64944966 51082266 51081736 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = 3385085 61544088 61557675 51083942 51097585 NC_060933.1 CM039042.1 98.4 True relocation, inconsistency = -8741828 52815983 52868696 51097721 51150539 NC_060933.1 CM039042.1 99.25 True relocation, inconsistency = 8740871 61609568 61622676 51150540 51163633 NC_060933.1 CM039042.1 99.14 True local misassembly 61622099 61623806 51163691 51165398 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 61623807 61625600 51165404 51167197 NC_060933.1 CM039042.1 99.94 True local misassembly 61627838 61628619 51168332 51169113 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 61628855 61631357 51169349 51171851 NC_060933.1 CM039042.1 99.95 True relocation, inconsistency = -8728284 52903074 52947803 51171852 51216401 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = 8755585 61703389 61726704 51216402 51240021 NC_060933.1 CM039042.1 97.7 True relocation, inconsistency = -8733243 52993462 53001506 51240022 51247986 NC_060933.1 CM039042.1 97.97 True local misassembly 53005956 53013353 51247987 51255304 NC_060933.1 CM039042.1 98.52 True local misassembly 53010078 53012014 51255948 51257884 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 53012025 53012770 51257885 51258630 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 53012776 53015288 51258631 51261143 NC_060933.1 CM039042.1 99.96 True local misassembly 53015718 53016971 51261144 51262397 NC_060933.1 CM039042.1 99.68 True indel: indel (<= 5bp) 53016977 53017876 51262398 51263297 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 53017877 53018973 51263303 51264399 NC_060933.1 CM039042.1 99.82 True local misassembly 53018974 53021071 51269819 51271916 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 53021072 53024036 51271922 51274886 NC_060933.1 CM039042.1 99.8 True indel: stretch of mismatches 53024517 53025440 51275367 51276290 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 53025776 53027786 51276611 51278621 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 53027792 53030491 51278622 51281321 NC_060933.1 CM039042.1 99.96 True indel: indel (<= 5bp) 53030497 53033331 51281322 51284156 NC_060933.1 CM039042.1 99.93 True local misassembly 53033982 53038117 51284812 51288947 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 53038118 53040244 51288953 51291079 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 53040245 53041842 51291085 51292682 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 53042003 53043224 51292843 51294064 NC_060933.1 CM039042.1 99.84 True local misassembly 53043750 53044937 51294600 51295787 NC_060933.1 CM039042.1 99.66 True indel: indel (<= 5bp) 53044943 53048184 51295788 51299029 NC_060933.1 CM039042.1 99.85 True indel: stretch of mismatches 53048460 53049919 51299305 51300764 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 53049920 53051654 51300770 51302504 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 53051660 53052496 51302505 51303341 NC_060933.1 CM039042.1 99.88 True relocation, inconsistency = -7302 53045520 53074919 51303667 51333745 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = 8736792 61811712 61823255 51333746 51345374 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = -12952 61810552 61819522 51345623 51354593 NC_060933.1 CM039042.1 97.43 True relocation, inconsistency = -8707149 53112462 53130170 51354682 51372395 NC_060933.1 CM039042.1 98.41 True fake: not a misassembly (possible transposable element) 62438941 62441961 51375411 51372396 NC_060933.1 CM039042.1 96.74 True fake: not a misassembly (possible transposable element) 53136272 53137159 51375412 51376309 NC_060933.1 CM039042.1 99.08 True fake: not a misassembly (possible transposable element) 62495887 62497739 51379322 51377490 NC_060933.1 CM039042.1 97.48 True fake: not a misassembly (possible transposable element) 53134244 53137159 51379480 51382430 NC_060933.1 CM039042.1 98.48 True relocation, inconsistency = 8716785 61855936 61856660 51384422 51385146 NC_060933.1 CM039042.1 99.86 True local misassembly 61859010 61859870 51387396 51388256 NC_060933.1 CM039042.1 99.65 True local misassembly 61860509 61861164 51388476 51389131 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = -8710054 53151599 53163715 51389620 51402131 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = 8737790 61901506 61909006 51402132 51409622 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = -8716244 53192763 53211843 51409623 51428683 NC_060933.1 CM039042.1 98.86 True local misassembly 53211820 53225005 51429459 51442698 NC_060933.1 CM039042.1 99.01 True local misassembly 53222933 53225654 51442699 51445430 NC_060933.1 CM039042.1 98.32 True relocation, inconsistency = 19627994 72857975 72858881 51450663 51449757 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = 10906245 61948845 61951571 51450822 51453588 NC_060933.1 CM039042.1 98.12 True relocation, inconsistency = -8830208 53121376 53130170 51453601 51462449 NC_060933.1 CM039042.1 97.67 True fake: not a misassembly (possible transposable element) 62438941 62441961 51465465 51462450 NC_060933.1 CM039042.1 96.71 True fake: not a misassembly (possible transposable element) 53136272 53137159 51465466 51466363 NC_060933.1 CM039042.1 99.11 True fake: not a misassembly (possible transposable element) 62495887 62497739 51469376 51467539 NC_060933.1 CM039042.1 97.75 True fake: not a misassembly (possible transposable element) 53134244 53137159 51469534 51472414 NC_060933.1 CM039042.1 96.14 True relocation, inconsistency = 9357517 62495887 62497739 51475452 51473625 NC_060933.1 CM039042.1 97.21 True relocation, inconsistency = 610795 61855473 61884934 51475610 51505391 NC_060933.1 CM039042.1 97.59 True relocation, inconsistency = -8704648 53180287 53207787 51505392 51532937 NC_060933.1 CM039042.1 99.16 True fake: not a misassembly (possible transposable element) 61929646 61933062 51532938 51536339 NC_060933.1 CM039042.1 99.51 True fake: not a misassembly (possible transposable element) 53211820 53215692 51537115 51540982 NC_060933.1 CM039042.1 99.54 True relocation, inconsistency = -9138 53206555 53211843 51540983 51546271 NC_060933.1 CM039042.1 99.32 True local misassembly 53211820 53225654 51547047 51560906 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = -52407 53173248 53175503 51560907 51563122 NC_060933.1 CM039042.1 95.03 True relocation, inconsistency = 8774433 61949937 61951571 51563123 51564777 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = -8830208 53121376 53130170 51564790 51573634 NC_060933.1 CM039042.1 97.69 True local misassembly 53134244 53137159 51574618 51577558 NC_060933.1 CM039042.1 98.95 True fake: not a misassembly (possible transposable element) 62496559 62497739 51579904 51578739 NC_060933.1 CM039042.1 96.9 True fake: not a misassembly (possible transposable element) 53134732 53137159 51579905 51582347 NC_060933.1 CM039042.1 99.3 True fake: not a misassembly (possible transposable element) 62495887 62497739 51585350 51583523 NC_060933.1 CM039042.1 97.16 True fake: not a misassembly (possible transposable element) 53134244 53137159 51585508 51588463 NC_060933.1 CM039042.1 97.67 True relocation, inconsistency = 8788607 61925823 61933062 51588520 51595739 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = -8722018 53211820 53225654 51596515 51610659 NC_060933.1 CM039042.1 96.73 True relocation, inconsistency = 9256836 62484198 62484699 51612868 51612367 NC_060933.1 CM039042.1 99.2 True relocation, inconsistency = -10376786 72857975 72858881 51615877 51614971 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = 10896532 61948845 61961284 51616036 51628490 NC_060933.1 CM039042.1 98.83 True local misassembly 61965257 61971056 51628491 51634390 NC_060933.1 CM039042.1 98.27 True local misassembly 61973548 61982409 51634391 51643301 NC_060933.1 CM039042.1 98.8 True relocation, inconsistency = 14324 61996734 62019427 51643302 51665975 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 8133534 53862287 53863199 51666878 51665976 NC_060933.1 CM039042.1 97.42 True relocation, inconsistency = -18608638 72469509 72470266 51668294 51667537 NC_060933.1 CM039042.1 99.21 True indel: indel (> 5bp) 72468524 72469493 51669264 51668295 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 10440595 62021122 62027462 51669731 51676082 NC_060933.1 CM039042.1 98.39 True relocation, inconsistency = 91372 62120463 62121898 51677518 51676083 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 8764390 53305825 53356072 51677519 51726079 NC_060933.1 CM039042.1 95.56 True relocation, inconsistency = -15080 53344885 53345431 51729972 51730518 NC_060933.1 CM039042.1 99.09 True indel: indel (> 5bp) 53345899 53346445 51731011 51731557 NC_060933.1 CM039042.1 96.71 True relocation, inconsistency = 8723407 62072039 62105080 51733744 51766771 NC_060933.1 CM039042.1 99.13 True relocation, inconsistency = -12025 62093056 62109801 51766772 51783573 NC_060933.1 CM039042.1 98.88 True local misassembly 62104384 62125670 51783574 51804969 NC_060933.1 CM039042.1 98.81 True local misassembly 62128001 62129075 51804970 51806039 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = -7969 62121380 62121948 51806313 51806876 NC_060933.1 CM039042.1 98.54 True local misassembly 62124048 62125650 51806877 51808474 NC_060933.1 CM039042.1 99.63 True local misassembly 62127981 62136997 51808475 51817486 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = -9971 62127028 62143517 51817488 51833982 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 27753 62172495 62203999 51835207 51866478 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = -8749455 53455411 53470784 51867345 51882818 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = 13010560 66488486 66490342 51884690 51882819 NC_060933.1 CM039042.1 96.11 True relocation, inconsistency = 4246745 62229791 62241740 51884691 51896640 NC_060933.1 CM039042.1 99.32 True local misassembly 62235762 62241740 51897016 51902999 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = -8751182 53490934 53492208 51903375 51904649 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 53492539 53493333 51904975 51905769 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 53493339 53493977 51905770 51906408 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 53493978 53495235 51906414 51907671 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 53495236 53496133 51907677 51908574 NC_060933.1 CM039042.1 100.0 True local misassembly 53496877 53498794 51911625 51913542 NC_060933.1 CM039042.1 99.79 True indel: indel (> 5bp) 53498805 53499619 51913543 51914357 NC_060933.1 CM039042.1 99.63 True indel: indel (<= 5bp) 53499620 53500363 51914363 51915106 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 53500374 53500957 51915107 51915690 NC_060933.1 CM039042.1 100.0 True local misassembly 53502218 53503264 51916945 51917991 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 53503328 53504203 51918051 51918926 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 53504683 53505913 51919391 51920621 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 53506329 53507535 51921027 51922233 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 53507536 53508260 51922239 51922963 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 53508266 53509781 51922964 51924479 NC_060933.1 CM039042.1 99.67 True local misassembly 53510466 53516261 51924581 51930291 NC_060933.1 CM039042.1 97.97 True indel: indel (> 5bp) 53516391 53553916 51930352 51967802 NC_060933.1 CM039042.1 98.84 True local misassembly 53559072 53566672 51967803 51975393 NC_060933.1 CM039042.1 98.72 True relocation, inconsistency = 8752673 62320411 62327532 51976459 51983530 NC_060933.1 CM039042.1 98.31 True relocation, inconsistency = 13490 62341023 62346821 51983531 51989319 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = -21647 62325175 62327340 51989320 51991485 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = 13490 62340831 62366202 51991486 52016807 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = -8760157 53606046 53624885 52016808 52035567 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = 8756414 62381300 62399857 52035568 52053975 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 13208253 75608595 75609234 52055099 52054460 NC_060933.1 CM039042.1 98.75 True local misassembly 75606198 75606894 52057502 52056806 NC_060933.1 CM039042.1 98.57 True relocation, inconsistency = 13198212 62399679 62406934 52058554 52066058 NC_060933.1 CM039042.1 96.05 True relocation, inconsistency = -8484708 53923975 53925774 52067807 52069626 NC_060933.1 CM039042.1 97.26 True relocation, inconsistency = 20007189 73933489 73934294 52070152 52070967 NC_060933.1 CM039042.1 98.04 True relocation, inconsistency = -11787475 62148392 62149188 52072540 52073336 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = -8224475 53924714 53928941 52073337 52077580 NC_060933.1 CM039042.1 95.75 True relocation, inconsistency = 21665341 75596334 75598218 52081476 52079632 NC_060933.1 CM039042.1 96.56 True relocation, inconsistency = 3580260 72011446 72012147 52086104 52085403 NC_060933.1 CM039042.1 98.72 True local misassembly 72009791 72010317 52087799 52087273 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = 7449163 64557736 64560098 52088329 52090641 NC_060933.1 CM039042.1 96.41 True relocation, inconsistency = 11016176 75577695 75581475 52095882 52092062 NC_060933.1 CM039042.1 95.95 True relocation, inconsistency = 13168953 62407453 62408418 52096206 52097171 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 62408419 62409541 52097177 52098299 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 62409547 62410394 52098300 52099147 NC_060933.1 CM039042.1 99.88 True indel: stretch of mismatches 62410742 62411478 52099495 52100231 NC_060933.1 CM039042.1 100.0 True local misassembly 62412126 62412944 52100484 52101302 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 62413004 62413532 52101372 52101900 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 62413849 62414871 52102207 52103229 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 62414872 62415394 52103240 52103762 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 62415395 62416411 52103768 52104784 NC_060933.1 CM039042.1 99.9 True local misassembly 62417074 62418151 52105187 52106264 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 62418157 62419255 52106265 52107363 NC_060933.1 CM039042.1 99.64 True indel: stretch of mismatches 62419523 62420385 52107631 52108493 NC_060933.1 CM039042.1 99.65 True indel: indel (> 5bp) 62420396 62421534 52108494 52109632 NC_060933.1 CM039042.1 99.91 True indel: indel (> 5bp) 62421629 62422491 52109712 52110574 NC_060933.1 CM039042.1 99.88 True local misassembly 62423134 62424127 52111621 52112614 NC_060933.1 CM039042.1 99.9 True relocation, inconsistency = 5311463 67738057 67738643 52115667 52115081 NC_060933.1 CM039042.1 98.64 True local misassembly 67735231 67736192 52118578 52117617 NC_060933.1 CM039042.1 99.27 True fake: not a misassembly (possible transposable element) 62054352 62057575 52123448 52120135 NC_060933.1 CM039042.1 95.23 True fake: not a misassembly (possible transposable element) 67724365 67724967 52124471 52123869 NC_060933.1 CM039042.1 99.34 True local misassembly 67722773 67723320 52126043 52125496 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 10608337 57113532 57114127 52126947 52126352 NC_060933.1 CM039042.1 99.5 True local misassembly 57110569 57111111 52129195 52128653 NC_060933.1 CM039042.1 99.08 True local misassembly 57109272 57110099 52130547 52129720 NC_060933.1 CM039042.1 99.52 True relocation, inconsistency = -4950347 62054352 62057575 52135894 52132591 NC_060933.1 CM039042.1 95.52 True relocation, inconsistency = -5671036 67724365 67724967 52136917 52136315 NC_060933.1 CM039042.1 99.34 True local misassembly 67722783 67723451 52138469 52137801 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = -7764 67721356 67724962 52147609 52144054 NC_060933.1 CM039042.1 95.23 True relocation, inconsistency = 13868310 53843516 53852697 52147958 52157154 NC_060933.1 CM039042.1 98.99 True relocation, inconsistency = 8755574 62608272 62616469 52157155 52165357 NC_060933.1 CM039042.1 99.47 True relocation, inconsistency = 11470776 74088224 74088854 52166336 52166966 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = -20223870 53865451 53880178 52167433 52182305 NC_060933.1 CM039042.1 97.34 True relocation, inconsistency = 8769328 62649914 62661428 52182713 52194307 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = -1086854 61574859 61575404 52194592 52195137 NC_060933.1 CM039042.1 98.17 True local misassembly 61576996 61577506 52196823 52197333 NC_060933.1 CM039042.1 99.02 True local misassembly 61578096 61578650 52197913 52198467 NC_060933.1 CM039042.1 99.1 True indel: indel (> 5bp) 61578689 61579750 52198531 52199592 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -7684087 53895701 53896383 52199630 52200312 NC_060933.1 CM039042.1 96.56 True local misassembly 53897177 53901339 52200313 52204430 NC_060933.1 CM039042.1 97.49 True relocation, inconsistency = 8762571 62663911 62664637 52204431 52205153 NC_060933.1 CM039042.1 95.74 True local misassembly 62661419 62665346 52205515 52209512 NC_060933.1 CM039042.1 95.85 True local misassembly 62665631 62666910 52210028 52211312 NC_060933.1 CM039042.1 97.22 True relocation, inconsistency = -7829258 54838066 54838673 52211726 52212333 NC_060933.1 CM039042.1 99.67 True local misassembly 54839374 54839963 52213248 52213837 NC_060933.1 CM039042.1 98.31 True indel: indel (<= 5bp) 54840117 54840703 52213996 52214582 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = 7543826 62386832 62387601 52216885 52217654 NC_060933.1 CM039042.1 97.92 True relocation, inconsistency = -7555476 54833558 54834709 52219087 52220233 NC_060933.1 CM039042.1 98.01 True relocation, inconsistency = 20452474 75291614 75292198 52225248 52224664 NC_060933.1 CM039042.1 98.63 True relocation, inconsistency = 2816128 72473652 72475165 52225569 52227082 NC_060933.1 CM039042.1 96.86 True local misassembly 72484109 72484639 52229089 52229619 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = -9841948 62643231 62645250 52230159 52232198 NC_060933.1 CM039042.1 97.46 True relocation, inconsistency = 3154134 65800699 65802558 52235362 52233513 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 4226145 61571832 61572380 52237536 52238084 NC_060933.1 CM039042.1 98.54 True local misassembly 61573441 61574196 52238915 52239670 NC_060933.1 CM039042.1 98.81 True local misassembly 61574860 61575419 52240259 52240818 NC_060933.1 CM039042.1 99.29 True indel: indel (> 5bp) 61575679 61576496 52241038 52241855 NC_060933.1 CM039042.1 99.27 True local misassembly 61577000 61577514 52242464 52242978 NC_060933.1 CM039042.1 99.03 True local misassembly 61579413 61579945 52244782 52245314 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 7807 61588676 61592924 52246238 52250511 NC_060933.1 CM039042.1 96.86 True relocation, inconsistency = -7703380 53889604 53900084 52250571 52261056 NC_060933.1 CM039042.1 98.68 True local misassembly 53899062 53903443 52261057 52265428 NC_060933.1 CM039042.1 99.65 True fake: not a misassembly (possible transposable element) 60085604 60088930 52268780 52265429 NC_060933.1 CM039042.1 96.35 True fake: not a misassembly (possible transposable element) 53903656 53906118 52271327 52273789 NC_060933.1 CM039042.1 97.83 True fake: not a misassembly (possible transposable element) 62675262 62680248 52277963 52283124 NC_060933.1 CM039042.1 96.13 True fake: not a misassembly (possible transposable element) 53909093 53916565 52283125 52290597 NC_060933.1 CM039042.1 99.39 True relocation, inconsistency = 8769649 62686215 62714208 52290598 52318526 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 4970103 57715347 57716111 52319291 52318527 NC_060933.1 CM039042.1 97.83 True relocation, inconsistency = 11780133 69496245 69503675 52319292 52326760 NC_060933.1 CM039042.1 98.5 True relocation, inconsistency = -15561755 53942435 53950355 52327275 52335241 NC_060933.1 CM039042.1 99.0 True local misassembly 53953357 53972147 52335376 52354470 NC_060933.1 CM039042.1 96.95 True relocation, inconsistency = 3630928 57603076 57610632 52362082 52354471 NC_060933.1 CM039042.1 96.86 True relocation, inconsistency = -10657482 68255682 68256599 52366958 52366041 NC_060933.1 CM039042.1 99.67 True indel: indel (> 5bp) 68254575 68255671 52368055 52366959 NC_060933.1 CM039042.1 99.45 True indel: stretch of mismatches 68253246 68254099 52369384 52368531 NC_060933.1 CM039042.1 98.71 True local misassembly 68251701 68252238 52371358 52370821 NC_060933.1 CM039042.1 99.63 True local misassembly 68250452 68251143 52372423 52371732 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 5445708 62756985 62804634 52372533 52420167 NC_060933.1 CM039042.1 99.2 True relocation, inconsistency = -8765906 54038729 54077104 52420168 52458394 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = 18930936 73008041 73014839 52465153 52458395 NC_060933.1 CM039042.1 97.99 True relocation, inconsistency = 17613786 55385338 55392189 52474190 52467219 NC_060933.1 CM039042.1 97.46 True relocation, inconsistency = -17607211 72976494 72992548 52490275 52474191 NC_060933.1 CM039042.1 98.2 True relocation, inconsistency = 1440941 71528371 71535530 52490298 52497432 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = 16197126 55330264 55331244 52498408 52497433 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -17713339 73041828 73043042 52500183 52498969 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 7134834 65893198 65905691 52513969 52501486 NC_060933.1 CM039042.1 97.25 True relocation, inconsistency = 5651256 71556948 71561040 52513970 52518052 NC_060933.1 CM039042.1 98.26 True local misassembly 71554059 71578191 52518053 52542200 NC_060933.1 CM039042.1 98.89 True relocation, inconsistency = 12988 71591390 71594365 52542411 52545381 NC_060933.1 CM039042.1 99.47 True local misassembly 71591720 71596196 52545382 52549848 NC_060933.1 CM039042.1 98.71 True relocation, scaffold gap is present, inconsistency = 4329089 75926094 75933487 52558045 52550657 NC_060933.1 CM039042.1 98.86 True local misassembly 75922712 75923460 52559629 52558881 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 75921855 75922706 52560481 52559630 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 75919895 75921713 52562446 52560628 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 75919018 75919894 52563328 52562452 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 75918160 75919017 52564191 52563334 NC_060933.1 CM039042.1 99.77 True indel: indel (> 5bp) 75916865 75917789 52565471 52564547 NC_060933.1 CM039042.1 99.89 True local misassembly 75915179 75916260 52567847 52566766 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 75912812 75914918 52570244 52568138 NC_060933.1 CM039042.1 99.95 True indel: indel (> 5bp) 75911652 75912485 52571384 52570551 NC_060933.1 CM039042.1 99.88 True local misassembly 75901506 75913415 52583214 52571385 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = 19700 75857857 75881805 52607178 52583215 NC_060933.1 CM039042.1 99.45 True local misassembly 75832610 75856397 52630726 52607303 NC_060933.1 CM039042.1 97.46 True fake: not a misassembly (possible transposable element) 58559984 58562196 52633734 52631528 NC_060933.1 CM039042.1 96.46 True fake: not a misassembly (possible transposable element) 75828032 75832664 52639395 52634763 NC_060933.1 CM039042.1 99.06 True local misassembly 75814598 75828849 52653673 52639396 NC_060933.1 CM039042.1 99.37 True local misassembly 75794432 75814636 52674778 52654569 NC_060933.1 CM039042.1 99.16 True local misassembly 75782759 75794454 52688537 52676993 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = 7299 75770409 75775459 52693563 52688538 NC_060933.1 CM039042.1 99.08 True local misassembly 75766424 75768877 52697918 52695455 NC_060933.1 CM039042.1 99.47 True local misassembly 75762176 75766454 52702974 52698681 NC_060933.1 CM039042.1 99.01 True local misassembly 75759342 75764805 52708448 52702975 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = 26390 75732046 75732947 52709323 52708453 NC_060933.1 CM039042.1 95.28 True relocation, inconsistency = -10809 75730212 75742854 52721966 52709324 NC_060933.1 CM039042.1 99.46 True local misassembly 75724344 75727544 52726790 52723565 NC_060933.1 CM039042.1 98.76 True local misassembly 75726491 75727265 52727815 52727041 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 75725112 75726490 52729199 52727821 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 75723958 75725111 52730358 52729205 NC_060933.1 CM039042.1 99.83 True local misassembly 75716699 75717570 52732251 52731380 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 75715440 75716202 52733505 52732743 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 75713935 75715176 52735010 52733769 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 75711730 75713924 52737205 52735011 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 75708763 75711729 52740192 52737226 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 75708134 75708752 52740811 52740193 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 75707082 75708128 52741858 52740812 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 75705653 75707081 52743292 52741864 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 75704540 75705306 52744415 52743649 NC_060933.1 CM039042.1 100.0 True local misassembly 75691480 75704766 52758543 52745282 NC_060933.1 CM039042.1 99.56 True local misassembly 75676367 75687954 52770151 52758544 NC_060933.1 CM039042.1 98.95 True relocation, inconsistency = 23649 75648646 75652717 52774248 52770152 NC_060933.1 CM039042.1 97.51 True relocation, inconsistency = 19876520 55770933 55771507 52775441 52774867 NC_060933.1 CM039042.1 98.43 True indel: indel (<= 5bp) 55770392 55770932 52775987 52775447 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = -6773814 62538641 62543714 52781522 52776479 NC_060933.1 CM039042.1 97.3 True relocation, inconsistency = 5358982 57178568 57179554 52782613 52781627 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = -18467478 75642419 75645371 52786215 52783288 NC_060933.1 CM039042.1 97.39 True relocation, inconsistency = -36523 75648826 75678941 52816311 52786216 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 13109356 62538641 62539469 52817135 52816312 NC_060933.1 CM039042.1 97.12 True relocation, inconsistency = 6186249 68725823 68726365 52817240 52817782 NC_060933.1 CM039042.1 98.53 True relocation, inconsistency = 6913745 75644066 75645340 52819059 52817795 NC_060933.1 CM039042.1 98.22 True local misassembly 75642412 75649475 52826118 52819060 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = -36528 75664443 75678939 52840724 52826119 NC_060933.1 CM039042.1 97.42 True relocation, inconsistency = 30590 75595487 75633852 52879038 52840725 NC_060933.1 CM039042.1 99.05 True local misassembly 75520034 75591108 52949988 52879039 NC_060933.1 CM039042.1 98.98 True local misassembly 75511448 75525635 52964196 52949989 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = 38715 75471507 75472577 52965422 52964352 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = 13505902 61962727 61965473 52968305 52965554 NC_060933.1 CM039042.1 95.04 True relocation, inconsistency = 8498173 53455389 53463165 52969694 52977399 NC_060933.1 CM039042.1 95.06 True local misassembly 53463907 53465140 52978321 52979534 NC_060933.1 CM039042.1 95.58 True relocation, inconsistency = 18785368 72258855 72259435 52987881 52988461 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = 1221321 71035698 71036906 52990292 52989089 NC_060933.1 CM039042.1 96.08 True relocation, inconsistency = 6471710 64561210 64561986 52993070 52992294 NC_060933.1 CM039042.1 98.33 True indel: indel (> 5bp) 64560017 64560724 52994273 52993566 NC_060933.1 CM039042.1 98.59 True local misassembly 64561210 64561986 52999785 52999009 NC_060933.1 CM039042.1 98.2 True local misassembly 64560017 64560619 53000993 53000391 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 7854933 72421941 72422663 53007382 53008104 NC_060933.1 CM039042.1 97.79 True local misassembly 72424060 72425893 53009436 53011244 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 1092147 71329438 71331891 53013754 53011266 NC_060933.1 CM039042.1 95.42 True local misassembly 71325856 71326640 53017416 53016632 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = 6602359 64718354 64720385 53020528 53022534 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = 10787085 75508959 75509462 53024023 53024526 NC_060933.1 CM039042.1 98.81 True local misassembly 75511621 75512176 53026625 53027180 NC_060933.1 CM039042.1 98.74 True local misassembly 75512857 75513393 53027861 53028397 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = 10548 75525447 75525973 53029903 53030424 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 4435632 71087792 71088355 53032447 53031884 NC_060933.1 CM039042.1 98.58 True local misassembly 71083496 71084118 53036589 53035967 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = -4387039 75455300 75470419 53051879 53036705 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = 9514 75411449 75445785 53086221 53051880 NC_060933.1 CM039042.1 98.82 True local misassembly 75385813 75409481 53110169 53086222 NC_060933.1 CM039042.1 97.48 True local misassembly 75388248 75389046 53110968 53110170 NC_060933.1 CM039042.1 99.88 True local misassembly 75386550 75387543 53113380 53112387 NC_060933.1 CM039042.1 99.6 True indel: indel (> 5bp) 75385718 75386296 53114227 53113649 NC_060933.1 CM039042.1 99.31 True local misassembly 75375901 75387574 53126260 53114627 NC_060933.1 CM039042.1 98.94 True local misassembly 75378309 75379986 53127898 53126261 NC_060933.1 CM039042.1 96.9 True local misassembly 75365359 75375876 53138402 53127900 NC_060933.1 CM039042.1 99.5 True local misassembly 75350156 75363496 53151749 53138403 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = 72177 75276675 75277978 53153053 53151750 NC_060933.1 CM039042.1 99.86 True local misassembly 75225553 75270350 53197651 53153054 NC_060933.1 CM039042.1 99.04 True local misassembly 75182884 75224914 53239523 53197652 NC_060933.1 CM039042.1 99.05 True local misassembly 75185456 75186515 53241398 53240349 NC_060933.1 CM039042.1 97.56 True local misassembly 75155352 75182936 53271296 53243737 NC_060933.1 CM039042.1 99.25 True local misassembly 75143893 75151091 53278390 53271297 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = -20963 75159761 75164855 53283389 53278391 NC_060933.1 CM039042.1 98.17 True local misassembly 75115112 75155520 53323752 53283390 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = 11205 75072590 75103906 53354842 53323753 NC_060933.1 CM039042.1 98.14 True relocation, inconsistency = 12497 75051508 75060092 53363427 53354843 NC_060933.1 CM039042.1 99.68 True relocation, inconsistency = 168033 74882283 74883024 53363878 53364619 NC_060933.1 CM039042.1 97.71 True relocation, inconsistency = 10370978 64508139 64509020 53367785 53366904 NC_060933.1 CM039042.1 98.98 True indel: indel (> 5bp) 64507245 64507857 53368669 53368057 NC_060933.1 CM039042.1 98.86 True local misassembly 64505639 64506270 53370355 53369724 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = -10548237 75042916 75051562 53381320 53372669 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = 17776500 57265752 57266353 53381984 53381383 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 6114096 51147421 51149114 53386229 53384526 NC_060933.1 CM039042.1 96.67 True relocation, inconsistency = -23910577 75053543 75056773 53390659 53387454 NC_060933.1 CM039042.1 95.63 True relocation, inconsistency = 10544 74998277 75042957 53435696 53390701 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = 10377 74975539 74987899 53447802 53435697 NC_060933.1 CM039042.1 97.31 True local misassembly 74941289 74974429 53480913 53447803 NC_060933.1 CM039042.1 99.13 True relocation, inconsistency = 14489 74919197 74926799 53488431 53480914 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = 11821630 63091778 63097566 53488432 53494198 NC_060933.1 CM039042.1 96.23 True relocation, inconsistency = 5563638 68664887 68668385 53497881 53501304 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 5766078 74436993 74437796 53504637 53503834 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = -477060 74907445 74912448 53511255 53506242 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = 25248 74873700 74882166 53519757 53511286 NC_060933.1 CM039042.1 99.11 True local misassembly 74874827 74875636 53520567 53519758 NC_060933.1 CM039042.1 97.76 True local misassembly 74838813 74873444 53555678 53520568 NC_060933.1 CM039042.1 97.5 True local misassembly 74811029 74836039 53580984 53555679 NC_060933.1 CM039042.1 97.17 True relocation, inconsistency = 19837 74787929 74788436 53584247 53583740 NC_060933.1 CM039042.1 99.21 True local misassembly 74750703 74783391 53617105 53584601 NC_060933.1 CM039042.1 98.52 True local misassembly 74748380 74748975 53617701 53617106 NC_060933.1 CM039042.1 100.0 True local misassembly 74741087 74751894 53628654 53617836 NC_060933.1 CM039042.1 98.74 True local misassembly 74683798 74737315 53682562 53629170 NC_060933.1 CM039042.1 98.79 True local misassembly 74609002 74685649 53758979 53682710 NC_060933.1 CM039042.1 98.71 True local misassembly 74600921 74606004 53764073 53758980 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = 22218920 52379683 52382000 53764074 53766402 NC_060933.1 CM039042.1 97.27 True local misassembly 52379607 52385215 53766538 53772137 NC_060933.1 CM039042.1 97.91 True local misassembly 52380137 52380716 53772360 53772939 NC_060933.1 CM039042.1 99.14 True local misassembly 52382712 52383364 53774786 53775438 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = 22187721 74573310 74597482 53801801 53777663 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = 13491 74549320 74559818 53812511 53801802 NC_060933.1 CM039042.1 97.45 True local misassembly 74545711 74546652 53813634 53812518 NC_060933.1 CM039042.1 96.41 True relocation, inconsistency = 7409 74500050 74538301 53852299 53813635 NC_060933.1 CM039042.1 97.21 True local misassembly 74477936 74501401 53875835 53852300 NC_060933.1 CM039042.1 98.91 True local misassembly 74477405 74482093 53880529 53875836 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = 5798709 68676559 68678695 53880530 53882711 NC_060933.1 CM039042.1 96.45 True relocation, inconsistency = 5743564 74422858 74444557 53905014 53883310 NC_060933.1 CM039042.1 99.24 True local misassembly 74417128 74422353 53910920 53905679 NC_060933.1 CM039042.1 96.97 True local misassembly 74405969 74414933 53919915 53910921 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 10931704 63473145 63473649 53920531 53921035 NC_060933.1 CM039042.1 99.01 True local misassembly 63471942 63472601 53924189 53924848 NC_060933.1 CM039042.1 98.94 True local misassembly 63473010 63473675 53925472 53926137 NC_060933.1 CM039042.1 99.25 True fake: not a misassembly (possible transposable element) 74406234 74407453 53928100 53926851 NC_060933.1 CM039042.1 96.64 True fake: not a misassembly (possible transposable element) 63471961 63472601 53928101 53928741 NC_060933.1 CM039042.1 98.81 True local misassembly 63473010 63473649 53929255 53929894 NC_060933.1 CM039042.1 99.38 True relocation, inconsistency = 10923687 74399374 74406092 53938594 53931896 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 48286 74350268 74351087 53939414 53938595 NC_060933.1 CM039042.1 99.21 True relocation, inconsistency = -10935 74343837 74361202 53956904 53939415 NC_060933.1 CM039042.1 97.63 True local misassembly 74338298 74342797 53961414 53956905 NC_060933.1 CM039042.1 98.7 True local misassembly 74325240 74327726 53968020 53965534 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 74324550 74325239 53968715 53968026 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 74323701 74324549 53969569 53968721 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74323196 74323695 53970069 53969570 NC_060933.1 CM039042.1 99.4 True indel: indel (<= 5bp) 74322206 74323195 53971064 53970075 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 74321168 74321828 53972127 53971467 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74319965 74320740 53973345 53972570 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 74319274 74319964 53974041 53973351 NC_060933.1 CM039042.1 99.28 True local misassembly 74317561 74318726 53976539 53975374 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74316495 74317129 53977625 53976991 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 9677722 64636974 64638065 53978333 53979444 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 9654571 74292732 74305708 53992561 53979540 NC_060933.1 CM039042.1 98.53 True relocation, inconsistency = 1689653 72600883 72602943 53992697 53994797 NC_060933.1 CM039042.1 96.72 True relocation, inconsistency = -7498009 65107149 65107989 53997012 53997852 NC_060933.1 CM039042.1 98.57 True local misassembly 65108536 65109187 53998610 53999261 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 9171408 74283601 74292756 54011492 54002267 NC_060933.1 CM039042.1 98.84 True relocation, inconsistency = 94673 74186570 74188927 54013840 54011493 NC_060933.1 CM039042.1 99.46 True local misassembly 74182555 74188216 54019982 54014311 NC_060933.1 CM039042.1 99.05 True local misassembly 74129980 74184002 54074690 54019983 NC_060933.1 CM039042.1 97.88 True relocation, inconsistency = 9500998 64628319 64628976 54074691 54075373 NC_060933.1 CM039042.1 95.34 True relocation, inconsistency = 9837864 74466841 74470238 54075374 54078796 NC_060933.1 CM039042.1 95.96 True local misassembly 74467805 74468330 54079626 54080151 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = -33570 74436933 74437796 54082324 54083187 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 304460 74121893 74130005 54093772 54085655 NC_060933.1 CM039042.1 99.31 True fake: not a misassembly (possible transposable element) 71384947 71387030 54094520 54096628 NC_060933.1 CM039042.1 97.63 True fake: not a misassembly (possible transposable element) 74120864 74121907 54098831 54097793 NC_060933.1 CM039042.1 99.52 True relocation, inconsistency = 8945277 65171671 65175254 54099164 54102702 NC_060933.1 CM039042.1 96.84 True relocation, inconsistency = -26129 65149371 65151162 54102948 54104739 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = 8958156 74112366 74116857 54109296 54104810 NC_060933.1 CM039042.1 98.38 True local misassembly 74095383 74109884 54124028 54109297 NC_060933.1 CM039042.1 96.81 True local misassembly 74085078 74094574 54133355 54124029 NC_060933.1 CM039042.1 97.8 True relocation, inconsistency = 9651 74058296 74075426 54150491 54133356 NC_060933.1 CM039042.1 98.93 True local misassembly 74038742 74060332 54172047 54150492 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = -31855 74031945 74070596 54210818 54172048 NC_060933.1 CM039042.1 98.75 True local misassembly 74027400 74032963 54216446 54210819 NC_060933.1 CM039042.1 98.84 True relocation, inconsistency = 7498604 66508144 66528795 54216447 54237015 NC_060933.1 CM039042.1 97.82 True relocation, inconsistency = 7482176 74010972 74015392 54241426 54237016 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = 9694 73998210 74001277 54244514 54241427 NC_060933.1 CM039042.1 99.32 True local misassembly 73987869 73997275 54253961 54244515 NC_060933.1 CM039042.1 98.7 True relocation, inconsistency = 8897090 65089696 65090381 54255044 54254359 NC_060933.1 CM039042.1 98.98 True local misassembly 65088327 65088827 54256393 54255893 NC_060933.1 CM039042.1 98.8 True relocation, inconsistency = -7801918 72889250 72889817 54257388 54256821 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 20035765 52850049 52851419 54259454 54260809 NC_060933.1 CM039042.1 97.67 True relocation, inconsistency = 21147788 73999853 74000595 54262197 54261455 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 73998856 73999581 54263194 54262469 NC_060933.1 CM039042.1 99.86 True local misassembly 73997245 73997759 54264830 54264316 NC_060933.1 CM039042.1 99.61 True local misassembly 73995762 73996557 54266308 54265513 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 73995054 73995756 54267011 54266309 NC_060933.1 CM039042.1 99.43 True indel: indel (<= 5bp) 73994069 73995048 54267991 54267012 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 13509489 60481505 60484343 54268228 54271071 NC_060933.1 CM039042.1 97.07 True relocation, inconsistency = 12404476 72889250 72889817 54272069 54271502 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 11296093 61589821 61591191 54274035 54275400 NC_060933.1 CM039042.1 98.4 True relocation, inconsistency = 12408076 73999913 74000595 54276728 54276046 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 73998856 73999581 54277800 54277075 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 9469 73978357 73987891 54288815 54279296 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = 13493136 60481756 60484341 54289695 54292285 NC_060933.1 CM039042.1 96.98 True relocation, inconsistency = 12404481 72889250 72889817 54293280 54292713 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 20035870 52850049 52851419 54295241 54296606 NC_060933.1 CM039042.1 98.4 True relocation, inconsistency = 21147848 73999913 74000595 54297934 54297252 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 73998856 73999581 54299011 54298286 NC_060933.1 CM039042.1 99.86 True relocation, inconsistency = 9464 73978357 73987891 54310036 54300512 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 13493134 60481756 60484343 54310916 54313508 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = 7967488 52513164 52514267 54314612 54313509 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = -21465389 73932925 73978374 54360704 54314791 NC_060933.1 CM039042.1 98.39 True relocation, inconsistency = 11756252 62175988 62176672 54361339 54360705 NC_060933.1 CM039042.1 95.61 True local misassembly 62175440 62178666 54365055 54361914 NC_060933.1 CM039042.1 95.01 True relocation, inconsistency = -522720 62697157 62698137 54366058 54365078 NC_060933.1 CM039042.1 99.29 True local misassembly 62692914 62693572 54370177 54369519 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = 8772883 53918844 53919720 54371354 54370488 NC_060933.1 CM039042.1 97.39 True relocation, inconsistency = 995165 52922824 52923462 54371571 54372214 NC_060933.1 CM039042.1 98.6 True relocation, inconsistency = 19552865 72476783 72478208 54374090 54372670 NC_060933.1 CM039042.1 96.53 True relocation, inconsistency = 9851000 62622359 62625644 54377483 54374229 NC_060933.1 CM039042.1 96.7 True relocation, inconsistency = 6688545 55925075 55931059 54386128 54380238 NC_060933.1 CM039042.1 96.74 True relocation, inconsistency = -18010655 73923885 73932981 54398360 54388877 NC_060933.1 CM039042.1 95.38 True local misassembly 73915313 73919368 54402500 54398450 NC_060933.1 CM039042.1 99.51 True fake: not a misassembly (possible transposable element) 52785854 52786368 54403571 54403057 NC_060933.1 CM039042.1 99.22 True fake: not a misassembly (possible transposable element) 73911639 73915323 54407377 54403693 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 73910381 73911633 54408630 54407378 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 73908273 73910380 54410748 54408641 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 73907733 73908267 54411283 54410749 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73906358 73907732 54412663 54411289 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 73905763 73906347 54413248 54412664 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73904854 73905762 54414162 54413254 NC_060933.1 CM039042.1 99.89 True local misassembly 73903304 73904692 54417260 54415872 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73902672 73903303 54417897 54417266 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 73901349 73902671 54419225 54417903 NC_060933.1 CM039042.1 99.92 True indel: indel (> 5bp) 73900137 73901334 54420431 54419234 NC_060933.1 CM039042.1 100.0 True local misassembly 73898216 73899453 54422332 54421095 NC_060933.1 CM039042.1 100.0 True local misassembly 73893781 73895142 54423699 54422338 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73891076 73893780 54426409 54423705 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 73890541 73891075 54426949 54426415 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73889256 73890540 54428239 54426955 NC_060933.1 CM039042.1 99.84 True local misassembly 73886002 73887006 54429244 54428240 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 73885050 73885986 54430181 54429245 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 73883903 73884700 54431318 54430521 NC_060933.1 CM039042.1 99.75 True relocation, inconsistency = 13895 73866579 73869555 54434757 54431771 NC_060933.1 CM039042.1 99.3 True local misassembly 73863252 73869555 54441523 54435210 NC_060933.1 CM039042.1 99.08 True relocation, inconsistency = 12391883 61470827 61471368 54442065 54441524 NC_060933.1 CM039042.1 99.61 True indel: indel (> 5bp) 61469934 61470518 54442968 54442384 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 33793 61429565 61435343 54449509 54443766 NC_060933.1 CM039042.1 98.14 True local misassembly 61426966 61427563 54450107 54449510 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = 8706540 52718110 52718684 54452423 54451849 NC_060933.1 CM039042.1 97.39 True local misassembly 52715496 52717595 54455295 54453251 NC_060933.1 CM039042.1 95.87 True local misassembly 52713957 52714796 54456140 54455296 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = -8742569 61454315 61456086 54458336 54456580 NC_060933.1 CM039042.1 97.24 True relocation, inconsistency = 8768442 52684513 52685130 54459691 54459079 NC_060933.1 CM039042.1 98.38 True relocation, inconsistency = -21176517 73832335 73860702 54488870 54460019 NC_060933.1 CM039042.1 97.39 True relocation, inconsistency = -50665 73863252 73882982 54508683 54488888 NC_060933.1 CM039042.1 99.25 True relocation, inconsistency = 21132514 52730196 52730737 54509225 54508684 NC_060933.1 CM039042.1 99.61 True indel: indel (<= 5bp) 52729303 52729887 54510123 54509539 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = -8706828 61434113 61434971 54512141 54511283 NC_060933.1 CM039042.1 98.84 True indel: indel (> 5bp) 61433474 61434112 54512790 54512152 NC_060933.1 CM039042.1 99.22 True indel: stretch of mismatches 61432221 61433263 54514043 54513001 NC_060933.1 CM039042.1 99.42 True indel: indel (> 5bp) 61430212 61432205 54516037 54514044 NC_060933.1 CM039042.1 99.4 True indel: indel (> 5bp) 61428999 61429941 54517230 54516288 NC_060933.1 CM039042.1 99.26 True local misassembly 61426780 61427458 54519816 54519138 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = 8706292 52715496 52717595 54524753 54522709 NC_060933.1 CM039042.1 95.68 True local misassembly 52713679 52714796 54525871 54524754 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = -8712829 61425148 61425765 54527231 54526614 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = -12435702 73833502 73860702 54554369 54527379 NC_060933.1 CM039042.1 98.74 True local misassembly 73800073 73833526 54588777 54554869 NC_060933.1 CM039042.1 97.91 True relocation, inconsistency = 12268127 61527960 61531945 54592763 54588778 NC_060933.1 CM039042.1 96.8 True relocation, inconsistency = -12385929 73911940 73913637 54594717 54593015 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = 101577 73800251 73810362 54604804 54594718 NC_060933.1 CM039042.1 98.83 True local misassembly 73793839 73797682 54608850 54604927 NC_060933.1 CM039042.1 97.31 True local misassembly 73786946 73788007 54611977 54610916 NC_060933.1 CM039042.1 99.82 True local misassembly 73762748 73791035 54640205 54611978 NC_060933.1 CM039042.1 99.43 True local misassembly 73757159 73761719 54644776 54640206 NC_060933.1 CM039042.1 99.41 True relocation, inconsistency = 16632 73737071 73740351 54648252 54644952 NC_060933.1 CM039042.1 99.0 True local misassembly 73724776 73735168 54659672 54649305 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 21142096 52581168 52582679 54661189 54659673 NC_060933.1 CM039042.1 95.89 True relocation, inconsistency = 3014273 55597036 55599728 54661273 54663995 NC_060933.1 CM039042.1 95.84 True relocation, inconsistency = 18113597 73713478 73724818 54675653 54664088 NC_060933.1 CM039042.1 95.83 True local misassembly 73636972 73717758 54756131 54675654 NC_060933.1 CM039042.1 98.89 True local misassembly 73613212 73634163 54777519 54756132 NC_060933.1 CM039042.1 96.51 True relocation, inconsistency = 64016 73525486 73549195 54801379 54777520 NC_060933.1 CM039042.1 98.34 True local misassembly 73525486 73532217 54808301 54801550 NC_060933.1 CM039042.1 98.89 True relocation, inconsistency = -13000 73515432 73538315 54831235 54808472 NC_060933.1 CM039042.1 98.07 True relocation, inconsistency = 3175923 70336570 70337230 54834174 54833514 NC_060933.1 CM039042.1 98.49 True relocation, inconsistency = -59608 70390229 70390887 54840122 54839465 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = -3121288 73504230 73509438 54847344 54842201 NC_060933.1 CM039042.1 96.4 True relocation, inconsistency = 1892265 71608788 71610405 54850516 54848904 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = -1908321 73513663 73515674 54853947 54851951 NC_060933.1 CM039042.1 97.63 True fake: not a misassembly (possible transposable element) 53019855 53020568 54854737 54855450 NC_060933.1 CM039042.1 99.22 True fake: not a misassembly (possible transposable element) 73513663 73515465 54857238 54855451 NC_060933.1 CM039042.1 98.17 True fake: not a misassembly (possible transposable element) 53019855 53020468 54858023 54858636 NC_060933.1 CM039042.1 99.05 True fake: not a misassembly (possible transposable element) 73502630 73515560 54871568 54858637 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = -9839 73509363 73512468 54874774 54871569 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 24096467 49410773 49411794 54875876 54876897 NC_060933.1 CM039042.1 97.55 True relocation, inconsistency = 24070460 73486405 73495024 54889652 54881048 NC_060933.1 CM039042.1 99.16 True local misassembly 73475086 73486612 54901679 54890133 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 23998053 49476133 49476883 54901829 54902594 NC_060933.1 CM039042.1 96.34 True relocation, inconsistency = 24021321 73504230 73509438 54913758 54908620 NC_060933.1 CM039042.1 96.55 True relocation, inconsistency = 1892265 71608788 71610405 54916930 54915318 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = -1908316 73513663 73515674 54920376 54918360 NC_060933.1 CM039042.1 98.08 True fake: not a misassembly (possible transposable element) 53019855 53020573 54921166 54921884 NC_060933.1 CM039042.1 99.2 True fake: not a misassembly (possible transposable element) 73513663 73515465 54923672 54921885 NC_060933.1 CM039042.1 97.63 True local misassembly 73510031 73515674 54930595 54924942 NC_060933.1 CM039042.1 99.19 True local misassembly 73502630 73515560 54943581 54930800 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = -9839 73509363 73512468 54946792 54943582 NC_060933.1 CM039042.1 95.83 True relocation, inconsistency = 9843128 63664107 63665128 54947899 54948920 NC_060933.1 CM039042.1 96.51 True relocation, inconsistency = 9817226 73486405 73495024 54961590 54952971 NC_060933.1 CM039042.1 99.23 True local misassembly 73475936 73486612 54972762 54962071 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = 35964 73418965 73439496 54994169 54973238 NC_060933.1 CM039042.1 96.97 True local misassembly 73417489 73418327 54998197 54997354 NC_060933.1 CM039042.1 99.61 True local misassembly 73414023 73418976 55003151 54998198 NC_060933.1 CM039042.1 99.74 True local misassembly 73399813 73410065 55013316 55003164 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = 63512 73334688 73336099 55014934 55013518 NC_060933.1 CM039042.1 95.76 True relocation, inconsistency = -32098 73365799 73366785 55015936 55014935 NC_060933.1 CM039042.1 95.47 True fake: not a misassembly (possible transposable element) 73296104 73296898 55016852 55016053 NC_060933.1 CM039042.1 98.5 True fake: not a misassembly (possible transposable element) 73363234 73363822 55017720 55017132 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = -37288 73396590 73397736 55021642 55020506 NC_060933.1 CM039042.1 98.49 True local misassembly 73386111 73399823 55035345 55021643 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = -15556 73399813 73401666 55037189 55035346 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 63512 73334688 73336099 55038802 55037391 NC_060933.1 CM039042.1 95.13 True relocation, inconsistency = -32098 73365799 73366785 55039799 55038803 NC_060933.1 CM039042.1 96.03 True fake: not a misassembly (possible transposable element) 73296104 73296898 55040720 55039916 NC_060933.1 CM039042.1 97.76 True fake: not a misassembly (possible transposable element) 73363091 73363822 55041736 55041005 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = -37303 73397183 73397747 55044947 55044383 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 53024 73339699 73344093 55049871 55045013 NC_060933.1 CM039042.1 96.36 True relocation, inconsistency = 9890 73299943 73329808 55079716 55049872 NC_060933.1 CM039042.1 99.21 True local misassembly 73295092 73296103 55080728 55079717 NC_060933.1 CM039042.1 98.58 True relocation, inconsistency = 17597611 55693815 55697480 55084379 55080729 NC_060933.1 CM039042.1 99.18 True local misassembly 55683060 55686135 55098056 55094991 NC_060933.1 CM039042.1 96.72 True relocation, inconsistency = -10597141 66276750 66279664 55101496 55098593 NC_060933.1 CM039042.1 96.5 True relocation, inconsistency = 10616192 55659536 55660398 55102518 55101656 NC_060933.1 CM039042.1 98.15 True relocation, inconsistency = -8393 55659342 55661994 55111109 55108453 NC_060933.1 CM039042.1 96.68 True relocation, inconsistency = -17820354 73475086 73476271 55115729 55114534 NC_060933.1 CM039042.1 97.91 True relocation, inconsistency = 20617015 52846471 52846990 55126810 55127329 NC_060933.1 CM039042.1 98.08 True relocation, inconsistency = 8430862 61278763 61279366 55128505 55127932 NC_060933.1 CM039042.1 95.5 True relocation, inconsistency = -13530981 74808222 74809743 55130042 55128506 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = 19148835 55645608 55659386 55143757 55130043 NC_060933.1 CM039042.1 97.36 True relocation, inconsistency = -10603022 66236635 66248155 55155498 55144232 NC_060933.1 CM039042.1 97.03 True relocation, inconsistency = 12635200 53599664 53600925 55156008 55157264 NC_060933.1 CM039042.1 95.4 True relocation, inconsistency = 89998 53507188 53507913 55159737 55159017 NC_060933.1 CM039042.1 96.44 True relocation, inconsistency = 8367883 61876792 61877828 55160733 55161799 NC_060933.1 CM039042.1 95.78 True relocation, inconsistency = -3224697 58654481 58655077 55163149 55163745 NC_060933.1 CM039042.1 97.99 True local misassembly 58655835 58656386 55164538 55165089 NC_060933.1 CM039042.1 99.28 True relocation, inconsistency = 14748793 73409096 73409645 55169006 55169555 NC_060933.1 CM039042.1 97.09 True relocation, inconsistency = -16395964 57016703 57018239 55172577 55174112 NC_060933.1 CM039042.1 97.8 True relocation, inconsistency = 5868240 51143691 51144660 55178874 55177915 NC_060933.1 CM039042.1 97.53 True relocation, inconsistency = 14402510 65547394 65547992 55179098 55179696 NC_060933.1 CM039042.1 95.57 True relocation, inconsistency = -6883654 58664968 58665693 55180326 55181046 NC_060933.1 CM039042.1 96.44 True relocation, inconsistency = 13666949 72335000 72335587 55184006 55183404 NC_060933.1 CM039042.1 95.19 True relocation, inconsistency = 21189850 51143691 51144660 55185455 55184496 NC_060933.1 CM039042.1 97.63 True relocation, inconsistency = 14402510 65547394 65547992 55185679 55186277 NC_060933.1 CM039042.1 95.57 True relocation, inconsistency = -6883654 58664968 58665693 55186907 55187627 NC_060933.1 CM039042.1 96.58 True relocation, inconsistency = 13666959 72335000 72335587 55190577 55189975 NC_060933.1 CM039042.1 95.36 True relocation, inconsistency = 3039675 69294131 69294856 55191046 55191786 NC_060933.1 CM039042.1 95.17 True relocation, inconsistency = 4757278 74057381 74057947 55197033 55197599 NC_060933.1 CM039042.1 97.88 True relocation, inconsistency = 704675 74763152 74764953 55199925 55198129 NC_060933.1 CM039042.1 96.48 True relocation, inconsistency = 10629343 64111785 64112948 55220786 55221949 NC_060933.1 CM039042.1 95.19 True relocation, inconsistency = 13031096 51078435 51080111 55224199 55222527 NC_060933.1 CM039042.1 97.15 True relocation, inconsistency = -20545304 71612992 71614550 55234971 55233388 NC_060933.1 CM039042.1 95.97 True relocation, inconsistency = -4591352 76200599 76203887 55238751 55235428 NC_060933.1 CM039042.1 97.81 True relocation, inconsistency = 16906299 59290131 59291346 55238820 55240014 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = 14661 59306008 59312793 55240015 55246717 NC_060933.1 CM039042.1 96.59 True relocation, inconsistency = 16878046 76191484 76192201 55248079 55247362 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = 9952252 66233229 66236995 55254107 55250316 NC_060933.1 CM039042.1 98.61 True local misassembly 66225451 66232360 55261022 55254108 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = -7062678 73265631 73287784 55283500 55261367 NC_060933.1 CM039042.1 99.35 True fake: not a misassembly (possible transposable element) 66208416 66209949 55285034 55283501 NC_060933.1 CM039042.1 98.4 True fake: not a misassembly (possible transposable element) 73257373 73265832 55293514 55285035 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 7066460 66188286 66190912 55296146 55293515 NC_060933.1 CM039042.1 98.68 True local misassembly 66170650 66186282 55311764 55296147 NC_060933.1 CM039042.1 98.18 True relocation, inconsistency = -7062075 73227346 73232724 55317228 55311765 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 7046361 66173460 66180984 55324798 55317229 NC_060933.1 CM039042.1 96.27 True relocation, inconsistency = -7049747 73194975 73223206 55352970 55324799 NC_060933.1 CM039042.1 99.08 True relocation, inconsistency = 17672453 55491926 55522446 55383661 55353046 NC_060933.1 CM039042.1 98.54 True relocation, inconsistency = -10580315 66067986 66072240 55387921 55383662 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 10570157 55484559 55497828 55401612 55387922 NC_060933.1 CM039042.1 96.15 True relocation, inconsistency = -17658543 73135381 73143101 55409328 55401613 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 6270120 66864422 66864927 55410167 55409662 NC_060933.1 CM039042.1 98.02 True indel: indel (> 5bp) 66863730 66864312 55410849 55410267 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 809476 66048484 66053438 55416614 55411665 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = -7075681 73122461 73124164 55418428 55416615 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 13236 73078173 73109224 55449825 55418429 NC_060933.1 CM039042.1 98.38 True fake: not a misassembly (possible transposable element) 75045264 75046701 55449856 55451278 NC_060933.1 CM039042.1 96.53 True fake: not a misassembly (possible transposable element) 73053117 73075977 55474287 55451279 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = -10371 73043161 73063487 55494744 55474288 NC_060933.1 CM039042.1 98.3 True relocation, inconsistency = -34690 73067886 73077458 55504928 55495137 NC_060933.1 CM039042.1 97.1 True relocation, inconsistency = 24693 73032534 73043192 55515537 55504929 NC_060933.1 CM039042.1 95.46 True local misassembly 73014536 73028749 55529657 55515538 NC_060933.1 CM039042.1 98.97 True local misassembly 72992107 73019462 55557368 55529658 NC_060933.1 CM039042.1 97.96 True fake: not a misassembly (possible transposable element) 65959267 65963456 55561583 55557369 NC_060933.1 CM039042.1 98.06 True fake: not a misassembly (possible transposable element) 72967314 72982235 55576470 55561584 NC_060933.1 CM039042.1 98.6 True relocation, inconsistency = 1447931 71502353 71519382 55576471 55593570 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = -6291683 65227700 65236792 55593571 55602669 NC_060933.1 CM039042.1 98.36 True relocation, inconsistency = -10588643 54648150 54652800 55602670 55607335 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = 16827468 71480269 71497051 55607336 55624143 NC_060933.1 CM039042.1 99.16 True relocation, inconsistency = 1422369 72919421 72951154 55656082 55624144 NC_060933.1 CM039042.1 98.61 True local misassembly 72908357 72921395 55669231 55656083 NC_060933.1 CM039042.1 95.99 True local misassembly 72882374 72904885 55691908 55669232 NC_060933.1 CM039042.1 98.23 True relocation, inconsistency = 7585722 65279731 65296651 55691909 55708904 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = 7529034 72825812 72850348 55732948 55708906 NC_060933.1 CM039042.1 97.26 True relocation, inconsistency = 73979 72706879 72751832 55778347 55732949 NC_060933.1 CM039042.1 98.35 True local misassembly 72697061 72700157 55781434 55778348 NC_060933.1 CM039042.1 99.3 True fake: not a misassembly (possible transposable element) 60273419 60276190 55781435 55784161 NC_060933.1 CM039042.1 97.5 True fake: not a misassembly (possible transposable element) 72691558 72694239 55787902 55785221 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 72690536 72691557 55788929 55787908 NC_060933.1 CM039042.1 99.9 True relocation, inconsistency = 12397570 60278294 60292152 55789743 55803696 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 15149443 75441640 75444568 55806645 55803702 NC_060933.1 CM039042.1 95.19 True relocation, inconsistency = 2770738 72661411 72670901 55816197 55806646 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 1877239 70773980 70784171 55826225 55816198 NC_060933.1 CM039042.1 96.52 True relocation, inconsistency = -1464583 72231100 72237993 55833613 55826795 NC_060933.1 CM039042.1 97.96 True relocation, inconsistency = 18639930 53589443 53591169 55833614 55835340 NC_060933.1 CM039042.1 97.04 True relocation, inconsistency = 11732795 65323965 65324671 55835341 55836047 NC_060933.1 CM039042.1 99.31 True indel: stretch of mismatches 65324844 65325857 55836220 55837233 NC_060933.1 CM039042.1 99.7 True local misassembly 65326538 65327792 55837889 55839143 NC_060933.1 CM039042.1 99.68 True local misassembly 65328791 65329424 55840062 55840695 NC_060933.1 CM039042.1 99.37 True indel: indel (<= 5bp) 65329425 65330089 55840701 55841365 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 65330090 65330872 55841376 55842158 NC_060933.1 CM039042.1 99.49 True local misassembly 65332182 65332928 55843872 55844618 NC_060933.1 CM039042.1 99.46 True indel: indel (<= 5bp) 65332929 65333651 55844624 55845346 NC_060933.1 CM039042.1 99.59 True local misassembly 65334227 65335024 55845942 55846739 NC_060933.1 CM039042.1 99.25 True local misassembly 65339743 65341575 55849127 55850959 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 65341576 65342266 55850965 55851655 NC_060933.1 CM039042.1 99.28 True indel: stretch of mismatches 65342409 65343275 55851798 55852664 NC_060933.1 CM039042.1 99.42 True local misassembly 65343832 65344677 55853226 55854071 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = 6857053 72201731 72212471 55864817 55854072 NC_060933.1 CM039042.1 98.22 True relocation, inconsistency = 963400 73176460 73177710 55865406 55866637 NC_060933.1 CM039042.1 95.47 True relocation, inconsistency = -7822618 65359457 65360858 55871002 55872403 NC_060933.1 CM039042.1 99.22 True indel: indel (<= 5bp) 65360864 65362324 55872404 55873864 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = 6800708 72163033 72164120 55874952 55873865 NC_060933.1 CM039042.1 99.45 True fake: not a misassembly (possible transposable element) 54781411 54782605 55875070 55876264 NC_060933.1 CM039042.1 98.75 True fake: not a misassembly (possible transposable element) 72158777 72161576 55879099 55876265 NC_060933.1 CM039042.1 97.29 True relocation, inconsistency = 8175 72149614 72150496 55880087 55879205 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 72148406 72149613 55881305 55880098 NC_060933.1 CM039042.1 99.67 True local misassembly 72145635 72146227 55883686 55883094 NC_060933.1 CM039042.1 99.33 True indel: indel (> 5bp) 72144965 72145634 55884405 55883736 NC_060933.1 CM039042.1 99.85 True local misassembly 72143395 72144283 55886094 55885206 NC_060933.1 CM039042.1 99.33 True indel: indel (<= 5bp) 72141832 72143394 55887662 55886100 NC_060933.1 CM039042.1 99.55 True indel: stretch of mismatches 72140894 72141442 55888600 55888052 NC_060933.1 CM039042.1 99.09 True indel: indel (<= 5bp) 72140342 72140893 55889157 55888606 NC_060933.1 CM039042.1 99.28 True indel: indel (> 5bp) 72139578 72140185 55889931 55889324 NC_060933.1 CM039042.1 99.84 True local misassembly 72137001 72137819 55892524 55891706 NC_060933.1 CM039042.1 99.39 True indel: indel (<= 5bp) 72136303 72137000 55893227 55892530 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 72135284 72136297 55894241 55893228 NC_060933.1 CM039042.1 99.51 True local misassembly 72121241 72135200 55912175 55898071 NC_060933.1 CM039042.1 96.76 True relocation, inconsistency = 1102619 70990945 71018621 55912176 55940790 NC_060933.1 CM039042.1 95.43 True fake: not a misassembly (possible transposable element) 60076383 60078169 55942532 55940791 NC_060933.1 CM039042.1 98.09 True fake: not a misassembly (possible transposable element) 71016849 71017932 55942548 55943631 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = -10549514 60468458 60469641 55943671 55944854 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 60469647 60470395 55944855 55945603 NC_060933.1 CM039042.1 99.73 True indel: stretch of mismatches 60470470 60471266 55945678 55946474 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 60471267 60471862 55946480 55947075 NC_060933.1 CM039042.1 99.66 True local misassembly 60479381 60480134 55947720 55948473 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 60480135 60481421 55948479 55949765 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = 12050334 72531756 72603261 56020815 55949766 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = 9548 72471400 72522050 56071393 56020973 NC_060933.1 CM039042.1 98.56 True local misassembly 72437657 72477162 56110869 56071394 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 11782151 60645652 60655505 56110870 56120793 NC_060933.1 CM039042.1 98.38 True relocation, inconsistency = 10658187 71313953 71327098 56121054 56134253 NC_060933.1 CM039042.1 97.76 True relocation, inconsistency = 1038451 72365550 72426078 56194812 56134254 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = -16838 72350989 72382387 56226506 56194813 NC_060933.1 CM039042.1 97.95 True relocation, inconsistency = 966337 71380174 71384651 56226507 56231019 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 7433 71392085 71392923 56231020 56231863 NC_060933.1 CM039042.1 98.13 True local misassembly 71396228 71400317 56231864 56235953 NC_060933.1 CM039042.1 98.89 True relocation, inconsistency = 937187 72337505 72351072 56249471 56235954 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = 904849 71424988 71432315 56249472 56256879 NC_060933.1 CM039042.1 97.56 True relocation, inconsistency = 870643 72302959 72330805 56284766 56256880 NC_060933.1 CM039042.1 98.95 True relocation, inconsistency = 7096076 65195454 65206351 56285298 56296205 NC_060933.1 CM039042.1 98.89 True local misassembly 65207486 65214000 56297450 56303939 NC_060933.1 CM039042.1 98.21 True relocation, inconsistency = 6268667 71482699 71486227 56303971 56307503 NC_060933.1 CM039042.1 99.07 True relocation, inconsistency = 756469 72242842 72257869 56322697 56307649 NC_060933.1 CM039042.1 98.5 True local misassembly 72237177 72241688 56327268 56322777 NC_060933.1 CM039042.1 99.31 True local misassembly 72231016 72234325 56330578 56327269 NC_060933.1 CM039042.1 99.15 True relocation, inconsistency = 6882006 65323251 65349009 56330579 56356153 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = 7826858 73176460 73177554 56356746 56357831 NC_060933.1 CM039042.1 96.82 True relocation, inconsistency = 23428300 49744153 49744834 56361838 56361157 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = -22458044 72179515 72201749 56383968 56362286 NC_060933.1 CM039042.1 96.14 True relocation, inconsistency = 6786020 65387902 65390781 56383969 56386876 NC_060933.1 CM039042.1 96.37 True local misassembly 65386460 65390320 56386877 56390652 NC_060933.1 CM039042.1 97.25 True relocation, inconsistency = 6772248 72168443 72179161 56401346 56390653 NC_060933.1 CM039042.1 96.52 True local misassembly 72133715 72165488 56432985 56401347 NC_060933.1 CM039042.1 98.86 True local misassembly 72135567 72137850 56435264 56432986 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = 17289505 54817897 54846061 56435265 56463319 NC_060933.1 CM039042.1 97.68 True relocation, inconsistency = 17199389 72045452 72068908 56486536 56463321 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 6578948 65455905 65466462 56486537 56497109 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = -10590738 54875725 54889851 56497110 56511251 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 17095352 71985204 72017979 56544072 56511252 NC_060933.1 CM039042.1 98.61 True relocation, inconsistency = 928718 71052966 71055510 56544073 56546648 NC_060933.1 CM039042.1 97.16 True relocation, inconsistency = -16124955 54930556 54935469 56546649 56551557 NC_060933.1 CM039042.1 97.52 True relocation, inconsistency = 10604 54946074 54966037 56551558 56571521 NC_060933.1 CM039042.1 97.42 True relocation, inconsistency = 16985955 71951993 71965979 56585513 56571522 NC_060933.1 CM039042.1 99.56 True local misassembly 71945395 71947088 56587207 56585514 NC_060933.1 CM039042.1 99.86 True indel: stretch of mismatches 71944422 71945079 56588180 56587523 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71943579 71944416 56589018 56588181 NC_060933.1 CM039042.1 99.76 True local misassembly 71941559 71942791 56591048 56589816 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 71938344 71941558 56594268 56591054 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 71936985 71938343 56595632 56594274 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 71935868 71936979 56596744 56595633 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 71934482 71935862 56598125 56596745 NC_060933.1 CM039042.1 99.86 True local misassembly 71929758 71930542 56598910 56598126 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 71928458 71929366 56600190 56599282 NC_060933.1 CM039042.1 99.78 True indel: indel (<= 5bp) 71927746 71928457 56600907 56600196 NC_060933.1 CM039042.1 99.86 True fake: not a misassembly (possible transposable element) 65585364 65590832 56601339 56606777 NC_060933.1 CM039042.1 97.85 True fake: not a misassembly (possible transposable element) 71920797 71921917 56611037 56609917 NC_060933.1 CM039042.1 98.05 True local misassembly 71911049 71921951 56623414 56612537 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 19242 71880371 71891806 56634880 56623415 NC_060933.1 CM039042.1 99.07 True relocation, inconsistency = -8534 71862047 71888868 56661214 56634917 NC_060933.1 CM039042.1 96.48 True relocation, inconsistency = 16837011 55021724 55025035 56661215 56664585 NC_060933.1 CM039042.1 97.14 True relocation, inconsistency = 13875 55038911 55041070 56664586 56666735 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 16787042 71834929 71839262 56671069 56666736 NC_060933.1 CM039042.1 99.54 True local misassembly 71774009 71829011 56725843 56671070 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = -14685 71753144 71788693 56761473 56725844 NC_060933.1 CM039042.1 99.1 True local misassembly 71737424 71753858 56778142 56761474 NC_060933.1 CM039042.1 97.96 True relocation, inconsistency = 7366 71723313 71730057 56784887 56778143 NC_060933.1 CM039042.1 98.18 True local misassembly 71723313 71725004 56789314 56787633 NC_060933.1 CM039042.1 98.76 True fake: not a misassembly (possible transposable element) 66799940 66803930 56791733 56795709 NC_060933.1 CM039042.1 95.58 True fake: not a misassembly (possible transposable element) 71706060 71723347 56813382 56795710 NC_060933.1 CM039042.1 97.51 True relocation, inconsistency = 16553056 55148673 55153003 56813383 56817648 NC_060933.1 CM039042.1 98.0 True relocation, inconsistency = 10577324 65730328 65731998 56817649 56819324 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 39475 65771702 65782936 56819553 56830802 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 5886478 71669581 71671742 56833130 56830969 NC_060933.1 CM039042.1 99.72 True indel: indel (<= 5bp) 71668997 71669575 56833709 56833131 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 71668419 71668996 56834292 56833715 NC_060933.1 CM039042.1 99.65 True indel: indel (<= 5bp) 71667816 71668418 56834900 56834298 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71666475 71667443 56836236 56835268 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 71665836 71666469 56836870 56836237 NC_060933.1 CM039042.1 99.84 True local misassembly 71662188 71664932 56840518 56837774 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 71661416 71662182 56841285 56840519 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 71660218 71661415 56842488 56841291 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 71659236 71660212 56843465 56842489 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 71658441 71659054 56844245 56843632 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 71657458 71658440 56845238 56844256 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71654863 71657457 56847838 56845244 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 71651971 71654862 56850735 56847844 NC_060933.1 CM039042.1 99.97 True indel: indel (<= 5bp) 71650321 71651970 56852390 56850741 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 71649148 71650315 56853558 56852391 NC_060933.1 CM039042.1 99.92 True relocation, inconsistency = 1000941 70641517 70648206 56853559 56860208 NC_060933.1 CM039042.1 95.34 True local misassembly 70644162 70644691 56862110 56862639 NC_060933.1 CM039042.1 98.3 True indel: indel (<= 5bp) 70644697 70645371 56862640 56863314 NC_060933.1 CM039042.1 98.52 True local misassembly 70646110 70646789 56864028 56864707 NC_060933.1 CM039042.1 97.06 True local misassembly 70647396 70648090 56865274 56865968 NC_060933.1 CM039042.1 97.55 True relocation, inconsistency = -14315244 56333551 56335347 56866673 56868449 NC_060933.1 CM039042.1 95.06 True relocation, inconsistency = 9396313 65731837 65733144 56868626 56869963 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 1387281 67121671 67123173 56871209 56872736 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = 8562290 75686594 75687353 56874646 56873867 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 4039135 71635159 71646776 56886931 56875329 NC_060933.1 CM039042.1 99.08 True local misassembly 71625357 71626169 56889907 56889115 NC_060933.1 CM039042.1 95.81 True local misassembly 71623373 71627834 56894359 56889908 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 16354015 55255438 55257343 56895305 56897210 NC_060933.1 CM039042.1 96.8 True relocation, inconsistency = 16334376 71591720 71623329 56928950 56897211 NC_060933.1 CM039042.1 98.16 True local misassembly 71579690 71594365 56943970 56928951 NC_060933.1 CM039042.1 96.85 True local misassembly 71576634 71578162 56945489 56943971 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = -9915 71579719 71586548 56952334 56945490 NC_060933.1 CM039042.1 98.54 True local misassembly 71556464 71578191 56974087 56952335 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = -7892 71556948 71564355 56981455 56974088 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 5651256 65893198 65905691 56981456 56993944 NC_060933.1 CM039042.1 98.69 True relocation, inconsistency = -10573413 55335091 55354831 56996757 57016391 NC_060933.1 CM039042.1 97.09 True relocation, inconsistency = 17610507 72965339 72992433 57016392 57043560 NC_060933.1 CM039042.1 98.33 True local misassembly 72987906 73021044 57043561 57076828 NC_060933.1 CM039042.1 96.83 True relocation, inconsistency = -7029379 65991666 66001986 57076829 57087234 NC_060933.1 CM039042.1 95.94 True relocation, inconsistency = 7027461 73029448 73031920 57087235 57089712 NC_060933.1 CM039042.1 98.52 True local misassembly 73031333 73043192 57090009 57101883 NC_060933.1 CM039042.1 98.98 True relocation, inconsistency = -17613833 55429621 55436839 57102145 57109133 NC_060933.1 CM039042.1 96.93 True relocation, inconsistency = 17606321 73043161 73075977 57109134 57142029 NC_060933.1 CM039042.1 97.63 True fake: not a misassembly (possible transposable element) 55430949 55435898 57142030 57146934 NC_060933.1 CM039042.1 98.0 True fake: not a misassembly (possible transposable element) 73082646 73083863 57147057 57148279 NC_060933.1 CM039042.1 99.43 True local misassembly 73084107 73102752 57148429 57166939 NC_060933.1 CM039042.1 98.43 True relocation, inconsistency = 33139 73136124 73140624 57167172 57171652 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = -17633002 55507623 55524068 57171653 57188173 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 17662876 73186945 73187778 57188174 57189002 NC_060933.1 CM039042.1 98.58 True local misassembly 73183964 73187778 57189003 57192807 NC_060933.1 CM039042.1 98.75 True local misassembly 73183964 73199850 57192808 57208664 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 11379 73211230 73213249 57208665 57210644 NC_060933.1 CM039042.1 98.66 True relocation, inconsistency = -17629938 55583312 55596719 57210645 57223957 NC_060933.1 CM039042.1 96.28 True relocation, inconsistency = 17626442 73223162 73256413 57223958 57257388 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = -8702 73247712 73249339 57257389 57259016 NC_060933.1 CM039042.1 99.21 True relocation, inconsistency = -7068766 66180574 66194626 57259017 57273114 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = 7066459 73261086 73265168 57273115 57277312 NC_060933.1 CM039042.1 96.29 True relocation, inconsistency = -7057427 66207742 66212821 57277313 57282387 NC_060933.1 CM039042.1 98.53 True relocation, inconsistency = -386708 65826140 65830830 57282414 57287124 NC_060933.1 CM039042.1 98.14 True relocation, inconsistency = 1129877 66960708 66961597 57287125 57288029 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = -11805398 55156376 55157683 57288206 57289528 NC_060933.1 CM039042.1 96.17 True relocation, inconsistency = 1350786 56509715 56511217 57290774 57292306 NC_060933.1 CM039042.1 95.71 True relocation, inconsistency = 19174236 75686594 75687353 57294216 57293447 NC_060933.1 CM039042.1 95.74 True relocation, inconsistency = 4039135 71644799 71646776 57296866 57294899 NC_060933.1 CM039042.1 98.19 True relocation, inconsistency = 5431787 66207742 66212821 57297057 57302131 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = -386708 65826140 65830830 57302158 57306863 NC_060933.1 CM039042.1 98.48 True relocation, inconsistency = -9478840 56351991 56352775 57306864 57307663 NC_060933.1 CM039042.1 95.28 True relocation, inconsistency = 15336290 71689536 71690634 57309063 57307935 NC_060933.1 CM039042.1 96.08 True relocation, inconsistency = -4070746 75758898 75760281 57310492 57309064 NC_060933.1 CM039042.1 95.11 True relocation, inconsistency = 19247680 56509715 56511217 57310493 57312020 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = 19174256 75686594 75687353 57313925 57313141 NC_060933.1 CM039042.1 95.29 True relocation, inconsistency = 4039135 71635159 71646776 57326265 57314608 NC_060933.1 CM039042.1 99.13 True local misassembly 71623357 71627834 57333719 57329247 NC_060933.1 CM039042.1 99.18 True fake: not a misassembly (possible transposable element) 62548932 62549734 57335315 57334508 NC_060933.1 CM039042.1 97.2 True fake: not a misassembly (possible transposable element) 71591720 71623319 57366830 57335316 NC_060933.1 CM039042.1 98.74 True local misassembly 71591390 71594365 57369801 57366831 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = 12988 71554059 71578191 57394344 57370012 NC_060933.1 CM039042.1 98.19 True local misassembly 71556958 71561040 57398417 57394345 NC_060933.1 CM039042.1 96.56 True local misassembly 71556958 71563949 57405419 57398418 NC_060933.1 CM039042.1 98.02 True local misassembly 71554059 71563949 57415375 57405420 NC_060933.1 CM039042.1 98.29 True local misassembly 71554059 71561040 57422387 57415376 NC_060933.1 CM039042.1 98.26 True local misassembly 71557939 71561040 57425479 57422388 NC_060933.1 CM039042.1 97.98 True relocation, inconsistency = 16227644 55325121 55330294 57425480 57430543 NC_060933.1 CM039042.1 96.14 True fake: not a misassembly (possible transposable element) 73041828 73043042 57431846 57433060 NC_060933.1 CM039042.1 98.77 True fake: not a misassembly (possible transposable element) 55330264 55331244 57433616 57434591 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = 16197126 71528371 71535530 57441731 57434592 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = 1440941 72976494 72992548 57441754 57457833 NC_060933.1 CM039042.1 98.28 True relocation, inconsistency = -7031130 65961419 65964411 57457834 57460841 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = 7258723 73223162 73257291 57460869 57495213 NC_060933.1 CM039042.1 98.57 True fake: not a misassembly (possible transposable element) 66188541 66190812 57495214 57497495 NC_060933.1 CM039042.1 99.02 True fake: not a misassembly (possible transposable element) 73257252 73265832 57497496 57506256 NC_060933.1 CM039042.1 97.04 True relocation, inconsistency = -7057417 66208416 66212821 57506257 57510667 NC_060933.1 CM039042.1 98.34 True relocation, inconsistency = -386708 65826140 65830830 57510694 57515399 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = -9496373 56334458 56335347 57515400 57516304 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = -1179148 55156376 55157683 57516481 57517808 NC_060933.1 CM039042.1 95.81 True relocation, inconsistency = 11962742 67121671 67123173 57519054 57520581 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = 8562280 75686594 75687353 57522491 57521722 NC_060933.1 CM039042.1 95.74 True relocation, inconsistency = 4039135 71644799 71646776 57525141 57523174 NC_060933.1 CM039042.1 98.19 True relocation, inconsistency = 5431787 66207742 66212821 57525332 57530391 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = -386708 65826140 65830830 57530418 57535123 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = 1129877 66960708 66961492 57535124 57535923 NC_060933.1 CM039042.1 95.23 True relocation, inconsistency = 4727573 71689536 71690634 57537323 57536195 NC_060933.1 CM039042.1 96.01 True relocation, inconsistency = -4070746 75758893 75760281 57538757 57537324 NC_060933.1 CM039042.1 95.11 True relocation, inconsistency = 8635719 67121671 67123173 57538758 57540290 NC_060933.1 CM039042.1 95.71 True relocation, inconsistency = 8562300 75686594 75687353 57542195 57541411 NC_060933.1 CM039042.1 95.29 True relocation, inconsistency = 4039135 71635159 71646776 57554535 57542878 NC_060933.1 CM039042.1 99.04 True local misassembly 71623357 71627834 57561974 57557512 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 16354461 55256216 55257338 57562458 57563570 NC_060933.1 CM039042.1 96.5 True relocation, inconsistency = 16350918 71608257 71623319 57578693 57563571 NC_060933.1 CM039042.1 98.94 True local misassembly 71596197 71605711 57588193 57578694 NC_060933.1 CM039042.1 99.1 True relocation, scaffold gap is present, inconsistency = 1594701 73200639 73201698 57588420 57589479 NC_060933.1 CM039042.1 99.83 True local misassembly 73206241 73213249 57589480 57596398 NC_060933.1 CM039042.1 98.53 True relocation, inconsistency = -7049882 66163368 66176771 57596399 57609707 NC_060933.1 CM039042.1 96.2 True relocation, inconsistency = 7046390 73223162 73257291 57609708 57644027 NC_060933.1 CM039042.1 98.49 True fake: not a misassembly (possible transposable element) 66188541 66194626 57644028 57650143 NC_060933.1 CM039042.1 98.97 True fake: not a misassembly (possible transposable element) 73258403 73265832 57650278 57657897 NC_060933.1 CM039042.1 96.42 True relocation, inconsistency = -7057417 66208416 66212821 57657898 57662308 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = -386708 65826140 65830830 57662335 57667035 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 1129877 66960708 66961597 57667036 57667935 NC_060933.1 CM039042.1 95.62 True relocation, inconsistency = -11805398 55156376 55157683 57668112 57669434 NC_060933.1 CM039042.1 96.17 True relocation, inconsistency = 11962747 67121671 67123173 57670675 57672202 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = 8562290 75686594 75687353 57674112 57673333 NC_060933.1 CM039042.1 95.64 True relocation, inconsistency = 4039135 71635159 71646776 57686442 57674795 NC_060933.1 CM039042.1 98.36 True relocation, inconsistency = 7235 71626226 71627757 57688135 57686609 NC_060933.1 CM039042.1 97.86 True local misassembly 71623357 71627834 57693861 57689394 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = 9077220 62545240 62545858 57694743 57694140 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = 7276827 55255441 55257292 57694744 57696610 NC_060933.1 CM039042.1 96.74 True relocation, inconsistency = 16334427 71591720 71623375 57728243 57696611 NC_060933.1 CM039042.1 98.84 True local misassembly 71579719 71594365 57743230 57728244 NC_060933.1 CM039042.1 96.41 True local misassembly 71554059 71578191 57767378 57743231 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 16223764 55320675 55330294 57767379 57776933 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = 17710226 73041828 73043042 57778241 57779455 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = -7137937 65905661 65906641 57780011 57780986 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 5597049 71503691 71522185 57799606 57780987 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = -15249 71510597 71518938 57808069 57799608 NC_060933.1 CM039042.1 98.32 True relocation, inconsistency = 1433414 72952364 72962182 57808081 57817749 NC_060933.1 CM039042.1 96.85 True local misassembly 72965339 72977733 57817750 57830394 NC_060933.1 CM039042.1 97.17 True local misassembly 72971888 72996836 57830610 57855623 NC_060933.1 CM039042.1 98.59 True relocation, inconsistency = 10848 73008779 73009623 57856718 57857562 NC_060933.1 CM039042.1 99.64 True local misassembly 73009754 73010441 57857563 57858250 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 73010812 73011818 57858566 57859572 NC_060933.1 CM039042.1 99.7 True indel: indel (<= 5bp) 73011824 73012416 57859573 57860165 NC_060933.1 CM039042.1 99.66 True indel: indel (<= 5bp) 73012417 73013330 57860171 57861084 NC_060933.1 CM039042.1 99.67 True indel: indel (> 5bp) 73013573 73014690 57861317 57862434 NC_060933.1 CM039042.1 99.46 True indel: indel (> 5bp) 73014691 73015540 57862445 57863294 NC_060933.1 CM039042.1 99.76 True indel: indel (<= 5bp) 73015541 73017254 57863300 57865013 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 73017260 73018087 57865014 57865841 NC_060933.1 CM039042.1 99.64 True indel: indel (<= 5bp) 73018088 73020141 57865847 57867900 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 73020142 73021013 57867906 57868777 NC_060933.1 CM039042.1 99.89 True local misassembly 73021245 73022857 57869493 57871105 NC_060933.1 CM039042.1 99.53 True fake: not a misassembly (possible transposable element) 73034733 73036859 57871106 57873252 NC_060933.1 CM039042.1 98.53 True fake: not a misassembly (possible transposable element) 73020690 73022857 57873253 57875420 NC_060933.1 CM039042.1 99.22 True relocation, inconsistency = 11875 73034733 73040466 57875421 57881174 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 24653 73065120 73074102 57881175 57890276 NC_060933.1 CM039042.1 97.1 True local misassembly 73080559 73093986 57890277 57903554 NC_060933.1 CM039042.1 97.07 True relocation, inconsistency = -49102 73045093 73045674 57903763 57904344 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 73046049 73046759 57904704 57905414 NC_060933.1 CM039042.1 99.86 True local misassembly 73047467 73048748 57906112 57907393 NC_060933.1 CM039042.1 99.69 True local misassembly 73048895 73049957 57907660 57908722 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 73049963 73050573 57908723 57909333 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 73050584 73051366 57909334 57910116 NC_060933.1 CM039042.1 99.87 True local misassembly 73052933 73054280 57911473 57912820 NC_060933.1 CM039042.1 99.78 True indel: indel (<= 5bp) 73054286 73055405 57912821 57913940 NC_060933.1 CM039042.1 99.91 True local misassembly 73056030 73058761 57914565 57917296 NC_060933.1 CM039042.1 99.45 True local misassembly 73059053 73059699 57917963 57918609 NC_060933.1 CM039042.1 100.0 True local misassembly 73063462 73069907 57919458 57925912 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = -11851 73059053 73059699 57926909 57927555 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73059700 73060532 57927561 57928393 NC_060933.1 CM039042.1 99.65 True local misassembly 73063462 73075977 57928394 57941063 NC_060933.1 CM039042.1 98.04 True relocation, inconsistency = -17645029 55430949 55437866 57941064 57948041 NC_060933.1 CM039042.1 97.61 True relocation, inconsistency = 17652725 73090827 73093524 57948277 57950989 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = -17634353 55459172 55474079 57950990 57966067 NC_060933.1 CM039042.1 95.83 True relocation, inconsistency = 10570355 66044435 66053438 57966068 57975046 NC_060933.1 CM039042.1 96.15 True relocation, inconsistency = 809446 66863730 66864312 57975892 57976474 NC_060933.1 CM039042.1 99.14 True indel: indel (> 5bp) 66864422 66864927 57976574 57977079 NC_060933.1 CM039042.1 98.02 True relocation, inconsistency = -811718 66053405 66059529 57977275 57983384 NC_060933.1 CM039042.1 98.18 True fake: not a misassembly (possible transposable element) 73141368 73143101 57983915 57985643 NC_060933.1 CM039042.1 95.2 True fake: not a misassembly (possible transposable element) 66060640 66069873 57985644 57994682 NC_060933.1 CM039042.1 96.63 True relocation, inconsistency = 7073524 73143742 73168517 57995027 58020126 NC_060933.1 CM039042.1 97.93 True local misassembly 73170308 73174004 58021833 58025534 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -17662082 55511923 55520501 58025535 58034143 NC_060933.1 CM039042.1 97.47 True relocation, inconsistency = -15394 55505125 55522658 58034161 58051789 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = 17685377 73208036 73213249 58051790 58056898 NC_060933.1 CM039042.1 98.36 True relocation, inconsistency = -17629938 55583312 55600938 58056899 58074394 NC_060933.1 CM039042.1 96.33 True relocation, inconsistency = 17626407 73227346 73233198 58074395 58080282 NC_060933.1 CM039042.1 98.82 True local misassembly 73234557 73257291 58080283 58103172 NC_060933.1 CM039042.1 98.34 True fake: not a misassembly (possible transposable element) 66188541 66190812 58103173 58105454 NC_060933.1 CM039042.1 98.49 True fake: not a misassembly (possible transposable element) 73257257 73265832 58105455 58114255 NC_060933.1 CM039042.1 96.42 True relocation, inconsistency = -7057422 66208411 66212707 58114256 58118522 NC_060933.1 CM039042.1 97.88 True relocation, inconsistency = -386698 65826140 65830830 58118653 58123358 NC_060933.1 CM039042.1 98.48 True relocation, inconsistency = 1129877 66960708 66961597 58123359 58124258 NC_060933.1 CM039042.1 95.91 True local misassembly 66960037 66961597 58124665 58126215 NC_060933.1 CM039042.1 95.83 True relocation, inconsistency = -1229937 65731837 65733144 58126392 58127719 NC_060933.1 CM039042.1 95.81 True relocation, inconsistency = 1387291 67121671 67123173 58128955 58130487 NC_060933.1 CM039042.1 95.71 True relocation, inconsistency = 8562382 75686691 75687353 58132300 58131623 NC_060933.1 CM039042.1 96.46 True relocation, inconsistency = 4039130 71635159 71646776 58144707 58133085 NC_060933.1 CM039042.1 99.15 True fake: not a misassembly (possible transposable element) 71626787 71627757 58145834 58144874 NC_060933.1 CM039042.1 98.37 True fake: not a misassembly (possible transposable element) 71635159 71638011 58148672 58145835 NC_060933.1 CM039042.1 98.92 True relocation, inconsistency = 7235 71627174 71627757 58149422 58148839 NC_060933.1 CM039042.1 99.32 True local misassembly 71623357 71627834 58156076 58151624 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 9077210 62545240 62545858 58156968 58156365 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = 3284953 65830812 65834306 58156969 58160438 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = 5784936 71619251 71620073 58161269 58160447 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 71617386 71619240 58163124 58161270 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 71616761 71617380 58163744 58163125 NC_060933.1 CM039042.1 99.35 True indel: indel (> 5bp) 71612692 71616760 58167863 58163795 NC_060933.1 CM039042.1 99.73 True indel: indel (> 5bp) 71611224 71612681 58169321 58167864 NC_060933.1 CM039042.1 99.66 True indel: stretch of mismatches 71610381 71610979 58170164 58169566 NC_060933.1 CM039042.1 99.67 True local misassembly 71608963 71609741 58171572 58170794 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 71607914 71608631 58172596 58171879 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 71606396 71607903 58174104 58172597 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 71605495 71606385 58174995 58174105 NC_060933.1 CM039042.1 99.55 True indel: stretch of mismatches 71604459 71605201 58176031 58175289 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 71603810 71604458 58176685 58176037 NC_060933.1 CM039042.1 99.54 True indel: indel (<= 5bp) 71603231 71603804 58177259 58176686 NC_060933.1 CM039042.1 99.48 True local misassembly 71600966 71601892 58178516 58177590 NC_060933.1 CM039042.1 99.57 True indel: indel (> 5bp) 71598937 71600829 58180535 58178643 NC_060933.1 CM039042.1 99.95 True fake: not a misassembly (possible transposable element) 65872343 65873384 58181834 58182875 NC_060933.1 CM039042.1 99.9 True fake: not a misassembly (possible transposable element) 71579719 71590393 58195393 58184714 NC_060933.1 CM039042.1 98.78 True local misassembly 71554059 71578191 58219501 58195394 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = 16223764 55320675 55330294 58219502 58229141 NC_060933.1 CM039042.1 98.82 True relocation, inconsistency = 17627043 72958993 72967832 58230797 58239595 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = -17639186 55328647 55330294 58239596 58241223 NC_060933.1 CM039042.1 98.13 True relocation, inconsistency = 17627043 72958993 72989268 58242879 58273063 NC_060933.1 CM039042.1 98.45 True fake: not a misassembly (possible transposable element) 65959456 65965908 58273064 58279621 NC_060933.1 CM039042.1 97.81 True fake: not a misassembly (possible transposable element) 72995480 72996675 58279869 58281064 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 72996681 72997497 58281065 58281881 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 72997503 73000473 58281882 58284852 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 73000953 73002233 58285322 58286602 NC_060933.1 CM039042.1 99.77 True indel: indel (> 5bp) 73002234 73003203 58286618 58287587 NC_060933.1 CM039042.1 99.59 True local misassembly 73006195 73007502 58290503 58291810 NC_060933.1 CM039042.1 99.85 True local misassembly 73008779 73010811 58293102 58295134 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = -17591044 55420231 55427499 58295598 58302866 NC_060933.1 CM039042.1 97.73 True relocation, inconsistency = 17603542 73031333 73043133 58303158 58314973 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = 25556 73068690 73078364 58314974 58324892 NC_060933.1 CM039042.1 96.54 True relocation, inconsistency = -17649145 55429621 55436936 58325294 58332649 NC_060933.1 CM039042.1 95.98 True relocation, inconsistency = 17606316 73043253 73075723 58332650 58365244 NC_060933.1 CM039042.1 97.11 True local misassembly 73078596 73109238 58365245 58395963 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = -7065969 66043270 66053438 58395964 58406067 NC_060933.1 CM039042.1 98.22 True relocation, inconsistency = 809456 66863730 66864312 58406903 58407485 NC_060933.1 CM039042.1 99.14 True indel: indel (> 5bp) 66864422 66864927 58407585 58408090 NC_060933.1 CM039042.1 98.02 True relocation, inconsistency = 6270110 73135381 73159945 58408434 58432972 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = -17655346 55504600 55524068 58432973 58452316 NC_060933.1 CM039042.1 97.4 True fake: not a misassembly (possible transposable element) 73186945 73190692 58452317 58456044 NC_060933.1 CM039042.1 97.22 True fake: not a misassembly (possible transposable element) 55531910 55536910 58456045 58461079 NC_060933.1 CM039042.1 97.43 True relocation, inconsistency = 17659221 73196132 73223206 58461080 58488193 NC_060933.1 CM039042.1 98.59 True relocation, inconsistency = -7049747 66173460 66176771 58488194 58491559 NC_060933.1 CM039042.1 96.26 True relocation, inconsistency = 7046390 73223162 73257291 58491560 58525799 NC_060933.1 CM039042.1 98.15 True fake: not a misassembly (possible transposable element) 66188541 66190812 58525800 58528086 NC_060933.1 CM039042.1 98.13 True fake: not a misassembly (possible transposable element) 73257257 73265832 58528087 58536842 NC_060933.1 CM039042.1 96.95 True fake: not a misassembly (possible transposable element) 66208416 66211115 58536843 58539537 NC_060933.1 CM039042.1 99.14 True fake: not a misassembly (possible transposable element) 73272382 73277525 58539544 58544707 NC_060933.1 CM039042.1 98.88 True relocation, inconsistency = -18032660 55244946 55245779 58544788 58545616 NC_060933.1 CM039042.1 99.14 True relocation, inconsistency = 10581055 65826835 65830830 58545617 58549607 NC_060933.1 CM039042.1 98.06 True relocation, inconsistency = -9478840 56351991 56352880 58549608 58550512 NC_060933.1 CM039042.1 95.81 True relocation, inconsistency = 9378780 65731837 65733144 58550689 58552006 NC_060933.1 CM039042.1 96.46 True relocation, inconsistency = -9224670 56509715 56511217 58553247 58554769 NC_060933.1 CM039042.1 96.4 True relocation, inconsistency = 15121294 71635159 71646776 58569024 58557417 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 7235 71627174 71627757 58569774 58569191 NC_060933.1 CM039042.1 99.66 True local misassembly 71623357 71627834 58576463 58571976 NC_060933.1 CM039042.1 99.55 True relocation, inconsistency = 17837097 53785187 53785981 58577516 58576742 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = 1469635 55255617 55256170 58577517 58578070 NC_060933.1 CM039042.1 99.86 True indel: stretch of mismatches 55256512 55257292 58578412 58579192 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 16353332 71610625 71623375 58591539 58579193 NC_060933.1 CM039042.1 95.65 True relocation, inconsistency = 7171 71549567 71603379 58645715 58591614 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = 34361 71504020 71515205 58656996 58645716 NC_060933.1 CM039042.1 98.62 True local misassembly 71495173 71505557 58667421 58656997 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 6248506 65227479 65246666 58686640 58667422 NC_060933.1 CM039042.1 98.14 True relocation, inconsistency = -6247548 71468532 71474900 58693130 58686767 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = 1269528 72745307 72746055 58694009 58694757 NC_060933.1 CM039042.1 99.47 True indel: indel (> 5bp) 72746315 72747094 58694997 58695776 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 72747095 72748206 58695782 58696893 NC_060933.1 CM039042.1 99.55 True local misassembly 72750086 72751961 58698423 58700298 NC_060933.1 CM039042.1 99.57 True indel: indel (> 5bp) 72751972 72752499 58700299 58700826 NC_060933.1 CM039042.1 99.81 True local misassembly 72753289 72753973 58701626 58702310 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = -20524 72739454 72746095 58708315 58715011 NC_060933.1 CM039042.1 95.92 True relocation, inconsistency = 18110109 54624376 54629319 58719925 58715037 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = -16844253 71450820 71468628 58737705 58719926 NC_060933.1 CM039042.1 98.2 True relocation, inconsistency = -15420 71406796 71466239 58797583 58737706 NC_060933.1 CM039042.1 97.9 True local misassembly 71391510 71401327 58807066 58797584 NC_060933.1 CM039042.1 95.76 True relocation, inconsistency = -14288 71395891 71405652 58816968 58807212 NC_060933.1 CM039042.1 99.3 True relocation, inconsistency = 12340 71381977 71383458 58818542 58817061 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 71374807 71381565 58825712 58818954 NC_060933.1 CM039042.1 99.9 True local misassembly 71374166 71374806 58828841 58828201 NC_060933.1 CM039042.1 100.0 True local misassembly 71372658 71374165 58836286 58834779 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 71371094 71372657 58837860 58836297 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 71370476 71371093 58838483 58837866 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71369337 71370470 58839617 58838484 NC_060933.1 CM039042.1 99.74 True indel: indel (<= 5bp) 71368042 71369336 58840917 58839623 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 71365766 71367945 58843193 58841014 NC_060933.1 CM039042.1 99.95 True local misassembly 71364640 71365240 58844309 58843709 NC_060933.1 CM039042.1 99.5 True indel: indel (> 5bp) 71363619 71364639 58845340 58844320 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 71362856 71363533 58846093 58845416 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 71361345 71362408 58847584 58846521 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 71360550 71361339 58848374 58847585 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 71359836 71360544 58849083 58848375 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 71359060 71359835 58849864 58849089 NC_060933.1 CM039042.1 100.0 True local misassembly 71357709 71358460 58851225 58850474 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71356482 71357703 58852447 58851226 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 71353345 71356481 58855589 58852453 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 71352124 71353344 58856815 58855595 NC_060933.1 CM039042.1 99.67 True indel: indel (<= 5bp) 71351618 71352118 58857316 58856816 NC_060933.1 CM039042.1 100.0 True local misassembly 71349045 71350917 58859890 58858018 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 71347171 71348750 58861769 58860190 NC_060933.1 CM039042.1 99.81 True indel: stretch of mismatches 71345725 71347105 58863215 58861835 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = -22154 71345209 71367801 58886671 58863293 NC_060933.1 CM039042.1 95.09 True relocation, inconsistency = 1036235 72404037 72404695 58886672 58887330 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 72404696 72405680 58887336 58888320 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 72405681 72406534 58888326 58889179 NC_060933.1 CM039042.1 99.88 True local misassembly 72408429 72409030 58891354 58891955 NC_060933.1 CM039042.1 99.83 True local misassembly 72409942 72410484 58892897 58893439 NC_060933.1 CM039042.1 99.63 True local misassembly 72411061 72411639 58894011 58894589 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 72411645 72412631 58894590 58895576 NC_060933.1 CM039042.1 99.8 True local misassembly 72413117 72416481 58896451 58899850 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 1076391 71315989 71336725 58920811 58899851 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = 10660063 60634037 60655873 58942740 58920864 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = -4348761 64978740 64982797 58946768 58942741 NC_060933.1 CM039042.1 96.95 True relocation, inconsistency = 17996 64958107 64960743 58949380 58946769 NC_060933.1 CM039042.1 98.38 True relocation, inconsistency = -6323446 71277573 71281528 58953385 58949405 NC_060933.1 CM039042.1 98.87 True relocation, inconsistency = 13081182 58195146 58196323 58953453 58954635 NC_060933.1 CM039042.1 95.74 True relocation, inconsistency = 4460498 62657181 62657797 58954995 58955596 NC_060933.1 CM039042.1 96.95 True relocation, inconsistency = 9836463 72494261 72514369 58955597 58975730 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = 11893494 60598708 60600766 58977805 58975731 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = -10648564 71224051 71247271 59000995 58977806 NC_060933.1 CM039042.1 99.45 True fake: not a misassembly (possible transposable element) 72527163 72533105 59000996 59006968 NC_060933.1 CM039042.1 98.04 True fake: not a misassembly (possible transposable element) 71219482 71221650 59009112 59006969 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = 20631 71159309 71198850 59048609 59009113 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 10665273 60470383 60494035 59072422 59048610 NC_060933.1 CM039042.1 97.97 True relocation, inconsistency = -10641860 71081030 71112242 59103440 59072423 NC_060933.1 CM039042.1 98.66 True local misassembly 71029234 71074971 59149124 59103558 NC_060933.1 CM039042.1 98.63 True local misassembly 71020903 71033494 59161736 59149125 NC_060933.1 CM039042.1 99.23 True relocation, inconsistency = 25737 70990945 70995165 59165937 59161737 NC_060933.1 CM039042.1 99.21 True relocation, inconsistency = 1087509 72082859 72083831 59166122 59167094 NC_060933.1 CM039042.1 99.49 True local misassembly 72084928 72086610 59168116 59169798 NC_060933.1 CM039042.1 99.64 True indel: stretch of mismatches 72086772 72087362 59169960 59170550 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 72087534 72088798 59170718 59171982 NC_060933.1 CM039042.1 99.45 True indel: indel (> 5bp) 72088854 72090266 59172008 59173420 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 1106122 70981893 70982671 59174259 59173481 NC_060933.1 CM039042.1 99.61 True indel: indel (> 5bp) 70980288 70981892 59175894 59174290 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 70977557 70980226 59178615 59175946 NC_060933.1 CM039042.1 99.91 True relocation, inconsistency = -1801105 72767306 72778661 59190181 59178616 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = 1800500 70965867 70966805 59191095 59190182 NC_060933.1 CM039042.1 98.29 True relocation, inconsistency = 1709088 72678509 72679511 59193711 59194713 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = 1729583 70930815 70948925 59212844 59194714 NC_060933.1 CM039042.1 98.85 True fake: not a misassembly (possible transposable element) 72689718 72693680 59212845 59216822 NC_060933.1 CM039042.1 98.07 True fake: not a misassembly (possible transposable element) 70927708 70930942 59220047 59216823 NC_060933.1 CM039042.1 99.48 True relocation, inconsistency = 1763652 72694595 72733685 59220048 59258818 NC_060933.1 CM039042.1 97.04 True relocation, inconsistency = 12456729 60237254 60237865 59259430 59258819 NC_060933.1 CM039042.1 99.4 True indel: indel (<= 5bp) 60234239 60237253 59262450 59259436 NC_060933.1 CM039042.1 99.34 True indel: indel (<= 5bp) 60232251 60234238 59264443 59262456 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 60231227 60232250 59265472 59264449 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 60228765 60231226 59267944 59265483 NC_060933.1 CM039042.1 99.92 True local misassembly 60228227 60228764 59268977 59268440 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60227696 60228226 59269513 59268983 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 60226014 60227511 59271185 59269688 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 60224791 60225549 59272393 59271635 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 60223034 60224785 59274145 59272394 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 60220285 60223033 59276899 59274151 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 60217412 60220279 59279767 59276900 NC_060933.1 CM039042.1 99.72 True indel: indel (> 5bp) 60215804 60217351 59281315 59279768 NC_060933.1 CM039042.1 99.94 True local misassembly 60215070 60215704 59285215 59284581 NC_060933.1 CM039042.1 99.84 True local misassembly 60213029 60214719 59286906 59285216 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60212472 60213023 59287458 59286907 NC_060933.1 CM039042.1 99.82 True local misassembly 60211150 60211837 59288790 59288103 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 60210507 60211149 59289438 59288796 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 60209481 60210282 59290454 59289653 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60208882 60209480 59291058 59290460 NC_060933.1 CM039042.1 99.5 True indel: stretch of mismatches 60207788 60208745 59292152 59291195 NC_060933.1 CM039042.1 99.69 True indel: indel (<= 5bp) 60205884 60207782 59294051 59292153 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 60204513 60205558 59295407 59294362 NC_060933.1 CM039042.1 99.52 True indel: indel (> 5bp) 60203551 60204194 59296354 59295711 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60201361 60203550 59298549 59296360 NC_060933.1 CM039042.1 99.95 True local misassembly 60199721 60200649 59300184 59299256 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60199144 60199715 59300756 59300185 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = -12484394 72666343 72683537 59317996 59300757 NC_060933.1 CM039042.1 98.88 True relocation, inconsistency = 12485406 60156819 60180936 59342416 59317997 NC_060933.1 CM039042.1 98.39 True relocation, inconsistency = 22273 60124769 60134545 59352223 59342417 NC_060933.1 CM039042.1 98.99 True relocation, inconsistency = -10630474 70751386 70755242 59356065 59352224 NC_060933.1 CM039042.1 99.58 True indel: indel (> 5bp) 70750251 70751323 59357191 59356119 NC_060933.1 CM039042.1 99.59 True fake: not a misassembly (possible transposable element) 60112795 60115825 59360197 59357192 NC_060933.1 CM039042.1 98.27 True fake: not a misassembly (possible transposable element) 70728400 70741421 59373288 59360198 NC_060933.1 CM039042.1 98.72 True relocation, inconsistency = 10625682 60075346 60102717 59400700 59373289 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 11032907 71135625 71137960 59400701 59403036 NC_060933.1 CM039042.1 99.7 True relocation, inconsistency = 1434868 72579254 72580656 59404944 59403542 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = 12633195 59918272 59946058 59432681 59404945 NC_060933.1 CM039042.1 98.77 True local misassembly 59856739 59917387 59493370 59432682 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = 12753 59813551 59843985 59523800 59493371 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = -10623109 70434282 70436659 59526178 59523801 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 16996 70401425 70417285 59542090 59526179 NC_060933.1 CM039042.1 99.08 True relocation, inconsistency = 18909 70381260 70382515 59543371 59542091 NC_060933.1 CM039042.1 96.5 True relocation, inconsistency = 10648474 59722045 59732175 59554097 59543982 NC_060933.1 CM039042.1 99.07 True local misassembly 59704034 59725601 59575701 59554134 NC_060933.1 CM039042.1 99.33 True relocation, inconsistency = -14741462 74434467 74444557 59586740 59576640 NC_060933.1 CM039042.1 95.43 True relocation, inconsistency = 14742861 59674730 59691605 59603651 59586741 NC_060933.1 CM039042.1 98.98 True relocation, inconsistency = -10742705 70401425 70417285 59619737 59603801 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = 10649245 59750924 59752179 59621028 59619738 NC_060933.1 CM039042.1 96.09 True relocation, inconsistency = -10612198 70352381 70362511 59631769 59621639 NC_060933.1 CM039042.1 99.2 True relocation, inconsistency = 10626743 59704034 59725601 59653373 59631806 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = -14741462 74436993 74444557 59661906 59654312 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = 14720690 59710391 59716302 59667823 59661907 NC_060933.1 CM039042.1 98.6 True relocation, inconsistency = -14734167 74434467 74444557 59677939 59667824 NC_060933.1 CM039042.1 95.28 True relocation, inconsistency = 14742861 59647215 59691605 59722006 59677940 NC_060933.1 CM039042.1 98.41 True local misassembly 59645264 59645927 59722703 59722040 NC_060933.1 CM039042.1 99.7 True indel: indel (<= 5bp) 59644661 59645258 59723301 59722704 NC_060933.1 CM039042.1 99.33 True local misassembly 59641949 59642901 59726318 59725366 NC_060933.1 CM039042.1 99.69 True fake: not a misassembly (possible transposable element) 70272262 70273077 59729028 59728213 NC_060933.1 CM039042.1 99.51 True fake: not a misassembly (possible transposable element) 59635095 59638691 59733376 59729768 NC_060933.1 CM039042.1 95.97 True relocation, inconsistency = -14382 59644009 59649476 59738844 59733377 NC_060933.1 CM039042.1 97.39 True relocation, inconsistency = -10627879 70271004 70271887 59739728 59738845 NC_060933.1 CM039042.1 99.91 True local misassembly 70268934 70270154 59741798 59740578 NC_060933.1 CM039042.1 99.43 True local misassembly 70267690 70268416 59743042 59742316 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70266916 70267689 59743821 59743048 NC_060933.1 CM039042.1 99.61 True indel: indel (<= 5bp) 70265776 70266915 59744966 59743827 NC_060933.1 CM039042.1 99.65 True local misassembly 70262689 70264455 59748063 59746297 NC_060933.1 CM039042.1 99.94 True indel: indel (> 5bp) 70259854 70262658 59750868 59748064 NC_060933.1 CM039042.1 99.96 True indel: indel (> 5bp) 70259067 70259799 59751601 59750869 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 70258268 70259051 59752385 59751602 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70257596 70258267 59753062 59752391 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70256450 70257595 59754213 59753068 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 70255577 70256449 59755091 59754219 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 70254388 70255576 59756285 59755097 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70253556 70254387 59757122 59756291 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70252364 70253147 59758319 59757536 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 70250431 70252231 59760252 59758452 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 70249217 70250430 59761471 59760258 NC_060933.1 CM039042.1 99.84 True local misassembly 70247064 70248621 59763634 59762077 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 70246494 70247063 59764209 59763640 NC_060933.1 CM039042.1 99.65 True indel: indel (> 5bp) 70245132 70246258 59765556 59764430 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 70244610 70245131 59766083 59765562 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 70243304 70244594 59767374 59766084 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 70239763 70242953 59770910 59767720 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 70238758 70239757 59771910 59770911 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 70238014 70238585 59772644 59772073 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 10703 70226186 70227310 59773769 59772645 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 70225434 70226180 59774516 59773770 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 70222581 70225428 59777364 59774517 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 70220848 70222580 59779102 59777370 NC_060933.1 CM039042.1 99.6 True indel: indel (> 5bp) 70219765 70220593 59780195 59779367 NC_060933.1 CM039042.1 99.64 True relocation, inconsistency = 10627211 59568052 59592553 59804677 59780196 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 10705542 70303087 70304039 59809669 59810621 NC_060933.1 CM039042.1 95.14 True relocation, inconsistency = -6086981 64225942 64227105 59819505 59820668 NC_060933.1 CM039042.1 96.08 True relocation, inconsistency = 1845425 62378618 62379749 59822567 59821436 NC_060933.1 CM039042.1 95.2 True relocation, inconsistency = 3494350 58882936 58884131 59823869 59822704 NC_060933.1 CM039042.1 95.5 True relocation, inconsistency = -11315102 70178504 70196245 59843098 59825662 NC_060933.1 CM039042.1 97.48 True relocation, inconsistency = 18893407 51284184 51284815 59844006 59843380 NC_060933.1 CM039042.1 96.23 True relocation, inconsistency = -5334877 56615762 56616811 59847285 59846256 NC_060933.1 CM039042.1 96.21 True relocation, inconsistency = 4400126 52210425 52213864 59852456 59849057 NC_060933.1 CM039042.1 96.7 True relocation, inconsistency = 5697560 57917203 57918469 59858235 59859541 NC_060933.1 CM039042.1 95.05 True relocation, inconsistency = 3290234 54626275 54626968 59860215 59859542 NC_060933.1 CM039042.1 95.97 True relocation, inconsistency = 908768 55540776 55541636 59865255 59866110 NC_060933.1 CM039042.1 97.1 True relocation, inconsistency = 7631552 63186320 63187054 59879976 59879242 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = -1290800 64474564 64475257 59882532 59881839 NC_060933.1 CM039042.1 98.99 True relocation, inconsistency = 10111652 54358906 54359508 59886538 59885936 NC_060933.1 CM039042.1 98.34 True relocation, inconsistency = -6553939 60911083 60911591 59888300 59887792 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = 7503156 68418511 68419104 59892064 59892657 NC_060933.1 CM039042.1 97.81 True indel: stretch of mismatches 68419355 68419900 59892908 59893453 NC_060933.1 CM039042.1 97.99 True relocation, inconsistency = -8783271 59637778 59639861 59894602 59896675 NC_060933.1 CM039042.1 96.71 True relocation, inconsistency = 8441049 51192547 51196591 59900852 59896813 NC_060933.1 CM039042.1 96.07 True relocation, inconsistency = 8439960 59637053 59639875 59901354 59904146 NC_060933.1 CM039042.1 96.17 True relocation, inconsistency = 10638616 70280508 70282415 59906163 59908071 NC_060933.1 CM039042.1 95.54 True relocation, inconsistency = 11942692 58333480 58335153 59912407 59910734 NC_060933.1 CM039042.1 95.81 True relocation, inconsistency = 5987740 64324925 64325477 59914439 59914986 NC_060933.1 CM039042.1 96.93 True local misassembly 64323275 64323858 59915648 59916236 NC_060933.1 CM039042.1 96.6 True fake: not a misassembly (possible transposable element) 68962522 68964195 59918862 59917184 NC_060933.1 CM039042.1 95.47 True fake: not a misassembly (possible transposable element) 64323275 64323858 59922093 59922681 NC_060933.1 CM039042.1 96.6 True fake: not a misassembly (possible transposable element) 58333480 58335153 59925302 59923629 NC_060933.1 CM039042.1 95.75 True fake: not a misassembly (possible transposable element) 64331316 64331995 59929377 59930049 NC_060933.1 CM039042.1 96.47 True local misassembly 64340530 64341154 59932541 59933165 NC_060933.1 CM039042.1 98.72 True indel: indel (> 5bp) 64341583 64342101 59933644 59934162 NC_060933.1 CM039042.1 98.07 True fake: not a misassembly (possible transposable element) 64069484 64070270 59935645 59936441 NC_060933.1 CM039042.1 95.51 True fake: not a misassembly (possible transposable element) 64340237 64341154 59936620 59937537 NC_060933.1 CM039042.1 98.69 True indel: indel (> 5bp) 64341583 64342106 59938026 59938549 NC_060933.1 CM039042.1 98.28 True fake: not a misassembly (possible transposable element) 64324758 64325550 59941121 59941908 NC_060933.1 CM039042.1 96.97 True fake: not a misassembly (possible transposable element) 64340237 64341154 59942132 59943049 NC_060933.1 CM039042.1 98.69 True indel: indel (> 5bp) 64341583 64342106 59943533 59944056 NC_060933.1 CM039042.1 98.66 True fake: not a misassembly (possible transposable element) 64324758 64325550 59946628 59947420 NC_060933.1 CM039042.1 96.62 True fake: not a misassembly (possible transposable element) 64340237 64341154 59947644 59948561 NC_060933.1 CM039042.1 98.69 True indel: indel (> 5bp) 64341583 64342106 59949045 59949568 NC_060933.1 CM039042.1 98.66 True relocation, inconsistency = -274446 64072467 64073030 59954375 59954943 NC_060933.1 CM039042.1 97.36 True local misassembly 64076218 64076782 59957969 59958523 NC_060933.1 CM039042.1 96.46 True relocation, inconsistency = -11600 64069484 64070102 59962825 59963433 NC_060933.1 CM039042.1 96.45 True relocation, inconsistency = 841777 64913448 64913977 59965002 59965531 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = -855640 64061548 64065078 59968742 59972286 NC_060933.1 CM039042.1 95.45 True relocation, inconsistency = 277509 64344010 64344516 59973709 59974215 NC_060933.1 CM039042.1 97.63 True relocation, inconsistency = 12057813 76403697 76405364 59977220 59975583 NC_060933.1 CM039042.1 96.23 True relocation, inconsistency = 20943347 55458658 55460243 59977327 59978932 NC_060933.1 CM039042.1 96.6 True relocation, inconsistency = 20953140 76414792 76417178 59982757 59980341 NC_060933.1 CM039042.1 95.18 True relocation, inconsistency = 19977904 56436369 56436887 59982758 59983276 NC_060933.1 CM039042.1 99.44 True local misassembly 56438455 56439067 59983881 59984493 NC_060933.1 CM039042.1 99.02 True local misassembly 56442483 56444321 59988472 59990305 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = 15477534 71923907 71925617 59994063 59992357 NC_060933.1 CM039042.1 96.47 True relocation, inconsistency = 12911076 59010780 59012152 59994742 59996124 NC_060933.1 CM039042.1 96.11 True relocation, inconsistency = -2547614 56468678 56469395 60000264 60000981 NC_060933.1 CM039042.1 99.44 True indel: indel (> 5bp) 56469536 56470122 60001147 60001733 NC_060933.1 CM039042.1 99.32 True local misassembly 56470667 56471182 60002273 60002788 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = -1988709 54484068 54486875 60004383 60007155 NC_060933.1 CM039042.1 95.76 True relocation, inconsistency = 11597605 66085270 66086100 60007945 60008775 NC_060933.1 CM039042.1 98.92 True relocation, inconsistency = 7100150 73189445 73190206 60011970 60012731 NC_060933.1 CM039042.1 99.21 True indel: indel (> 5bp) 73190400 73191543 60012910 60014053 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = -550263 72643810 72645180 60016583 60017973 NC_060933.1 CM039042.1 96.06 True relocation, inconsistency = -16158211 56487161 56487669 60018165 60018673 NC_060933.1 CM039042.1 98.43 True indel: indel (> 5bp) 56488146 56488923 60019135 60019912 NC_060933.1 CM039042.1 99.36 True local misassembly 56489517 56490060 60020496 60021039 NC_060933.1 CM039042.1 99.63 True local misassembly 56492317 56492898 60023421 60024002 NC_060933.1 CM039042.1 99.14 True local misassembly 56493634 56494277 60024718 60025361 NC_060933.1 CM039042.1 98.6 True local misassembly 56494827 56495326 60025976 60026475 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = 10611116 67111469 67112118 60031502 60032151 NC_060933.1 CM039042.1 99.08 True relocation, inconsistency = 7970135 75083475 75084092 60034015 60033373 NC_060933.1 CM039042.1 95.18 True relocation, inconsistency = 18559689 56522092 56522881 60034920 60035709 NC_060933.1 CM039042.1 98.61 True indel: indel (> 5bp) 56523392 56523910 60036145 60036663 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = 9560205 66085117 66086120 60037665 60038673 NC_060933.1 CM039042.1 98.22 True relocation, inconsistency = -2292833 63799254 63799842 60044640 60045228 NC_060933.1 CM039042.1 99.66 True indel: indel (> 5bp) 63800112 63800695 60045478 60046061 NC_060933.1 CM039042.1 99.14 True local misassembly 63799853 63800695 60049126 60049968 NC_060933.1 CM039042.1 98.93 True local misassembly 63799254 63799842 60052714 60053302 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 63799853 63800695 60053303 60054145 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = 3470598 67274728 67275644 60057580 60058496 NC_060933.1 CM039042.1 98.58 True relocation, inconsistency = -10602898 56673726 56675073 60059476 60060823 NC_060933.1 CM039042.1 97.07 True relocation, inconsistency = 10592193 67272379 67273982 60065936 60067529 NC_060933.1 CM039042.1 97.64 True relocation, inconsistency = -3474930 63799053 63799842 60067530 60068319 NC_060933.1 CM039042.1 99.15 True indel: indel (> 5bp) 63799853 63800695 60068320 60069162 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = -7124074 56677461 56679317 60070002 60071873 NC_060933.1 CM039042.1 97.55 True fake: not a misassembly (possible transposable element) 63175503 63176110 60072491 60071874 NC_060933.1 CM039042.1 96.94 True fake: not a misassembly (possible transposable element) 56675163 56679097 60074678 60078662 NC_060933.1 CM039042.1 96.19 True relocation, inconsistency = 10597009 67285784 67287932 60088340 60090563 NC_060933.1 CM039042.1 95.69 True fake: not a misassembly (possible transposable element) 56756670 56757422 60093779 60094531 NC_060933.1 CM039042.1 98.01 True fake: not a misassembly (possible transposable element) 67287972 67289761 60097250 60099049 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = 87312 67381461 67382069 60103437 60104055 NC_060933.1 CM039042.1 97.58 True relocation, inconsistency = 5740295 73130322 73130939 60112013 60112630 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 20476930 52650031 52653225 60115991 60112797 NC_060933.1 CM039042.1 96.62 True relocation, inconsistency = 14650910 67305800 67313365 60117656 60125235 NC_060933.1 CM039042.1 95.35 True relocation, inconsistency = 17692314 49612910 49613485 60125811 60125236 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = 7095237 56708723 56709991 60125812 60127065 NC_060933.1 CM039042.1 97.81 True relocation, inconsistency = 10627745 67337737 67342708 60127066 60131956 NC_060933.1 CM039042.1 95.93 True relocation, inconsistency = 7795086 59540568 59542555 60134039 60132052 NC_060933.1 CM039042.1 97.9 True relocation, inconsistency = 2787700 56752036 56752867 60134040 60134871 NC_060933.1 CM039042.1 95.12 True relocation, inconsistency = -11905 56745626 56747044 60139535 60140973 NC_060933.1 CM039042.1 97.37 True relocation, inconsistency = -61224 56687082 56688744 60142235 60143902 NC_060933.1 CM039042.1 98.15 True relocation, inconsistency = 11554 56701944 56703616 60145548 60147230 NC_060933.1 CM039042.1 98.28 True relocation, inconsistency = 10628684 67332415 67336287 60147345 60151131 NC_060933.1 CM039042.1 95.18 True relocation, inconsistency = 17718929 49612910 49613485 60151707 60151132 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = 7095237 56708723 56709991 60151708 60152961 NC_060933.1 CM039042.1 97.83 True relocation, inconsistency = 10627745 67337737 67342708 60152962 60157847 NC_060933.1 CM039042.1 95.99 True relocation, inconsistency = 7795086 59540568 59542555 60159930 60157943 NC_060933.1 CM039042.1 97.9 True relocation, inconsistency = 7813855 67356411 67357026 60159931 60160546 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = -10616265 56745626 56747044 60165411 60166834 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 4724030 61474467 61475061 60170821 60170227 NC_060933.1 CM039042.1 97.82 True relocation, inconsistency = 4784923 56684116 56685469 60174896 60176259 NC_060933.1 CM039042.1 97.52 True relocation, inconsistency = 18683053 75369876 75370713 60178460 60177613 NC_060933.1 CM039042.1 96.01 True relocation, inconsistency = 2237531 73128851 73131833 60178972 60181944 NC_060933.1 CM039042.1 95.56 True relocation, inconsistency = -16296320 56837048 56837905 60183479 60184336 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = 7107151 49727810 49728544 60186423 60185689 NC_060933.1 CM039042.1 98.23 True local misassembly 49727426 49729062 60191419 60189773 NC_060933.1 CM039042.1 97.04 True local misassembly 49727426 49729068 60195957 60194310 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 7106505 56836244 56838364 60196628 60198748 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = 7219562 49612910 49614267 60202535 60201163 NC_060933.1 CM039042.1 96.19 True relocation, inconsistency = 17698311 67312579 67315943 60202536 60205906 NC_060933.1 CM039042.1 97.15 True relocation, inconsistency = 2830684 70146628 70178528 60237862 60205907 NC_060933.1 CM039042.1 99.24 True local misassembly 70137638 70141818 60242003 60237863 NC_060933.1 CM039042.1 97.23 True fake: not a misassembly (possible transposable element) 59509484 59510582 60243142 60242004 NC_060933.1 CM039042.1 96.3 True fake: not a misassembly (possible transposable element) 70137638 70139594 60245099 60243143 NC_060933.1 CM039042.1 100.0 True local misassembly 70138371 70139494 60246278 60245100 NC_060933.1 CM039042.1 95.88 True local misassembly 70100188 70137427 60283166 60246875 NC_060933.1 CM039042.1 96.82 True local misassembly 70063484 70099559 60319251 60283167 NC_060933.1 CM039042.1 98.79 True local misassembly 70056411 70067333 60330077 60319252 NC_060933.1 CM039042.1 97.37 True local misassembly 70015768 70055893 60370165 60330080 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = -81337 70063484 70097104 60403790 60370166 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 10625067 59427494 59438416 60414581 60403791 NC_060933.1 CM039042.1 97.2 True relocation, inconsistency = -10628402 69959968 70055893 60507523 60414584 NC_060933.1 CM039042.1 95.93 True relocation, inconsistency = 10626375 59305879 59333592 60535532 60507524 NC_060933.1 CM039042.1 98.3 True relocation, inconsistency = 14542 59278637 59291336 60548147 60535533 NC_060933.1 CM039042.1 97.67 True relocation, inconsistency = -19708 59296578 59298344 60549914 60548148 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 59290972 59296572 60555515 60549915 NC_060933.1 CM039042.1 99.96 True indel: indel (> 5bp) 59289295 59290804 60557157 60555648 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 59287871 59289294 60558586 60557163 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 59286452 59287870 60560010 60558592 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 59284495 59286227 60561967 60560235 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 59282311 59284474 60564131 60561968 NC_060933.1 CM039042.1 99.72 True indel: indel (<= 5bp) 59281213 59282305 60565224 60564132 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 59279926 59281207 60566506 60565225 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 59279256 59279811 60567176 60566621 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 59278079 59279250 60568348 60567177 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 59276552 59278078 60569890 60568364 NC_060933.1 CM039042.1 99.93 True indel: indel (<= 5bp) 59274509 59276546 60571928 60569891 NC_060933.1 CM039042.1 99.85 True local misassembly 59273622 59274508 60572995 60572109 NC_060933.1 CM039042.1 99.89 True local misassembly 59271383 59271982 60579663 60579064 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 59270391 59271228 60580670 60579833 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 59269517 59270385 60581539 60580671 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 59268719 59269516 60582342 60581545 NC_060933.1 CM039042.1 99.75 True indel: indel (<= 5bp) 59267248 59268413 60583808 60582643 NC_060933.1 CM039042.1 99.83 True relocation, inconsistency = -10613787 69866733 69881034 60598100 60583809 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 1438236 68409570 68424393 60598101 60612849 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 1401019 69825413 69857888 60645335 60612850 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 10635084 59172536 59190328 60663108 60645336 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = -10610320 69768307 69782855 60677592 60663109 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 6680499 63086385 63087807 60679005 60677593 NC_060933.1 CM039042.1 97.29 True relocation, inconsistency = 3947001 59095795 59139383 60722634 60679006 NC_060933.1 CM039042.1 98.21 True relocation, inconsistency = -10632799 69724779 69728163 60726454 60723065 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 10569126 59148012 59155652 60734074 60726455 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = 54262 59091610 59093749 60736204 60734075 NC_060933.1 CM039042.1 96.62 True relocation, inconsistency = -10628163 69717492 69719772 60738490 60736205 NC_060933.1 CM039042.1 99.74 True local misassembly 69711404 69715435 60742542 60738491 NC_060933.1 CM039042.1 99.46 True relocation, inconsistency = -5263461 74971154 74971899 60746253 60745508 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 5259804 69703469 69711349 60746254 60754164 NC_060933.1 CM039042.1 99.47 True relocation, inconsistency = 15428842 54274062 54274626 60754729 60754165 NC_060933.1 CM039042.1 99.65 True local misassembly 54271722 54272892 60756869 60755699 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = 13591382 67864490 67878964 60757085 60771420 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = 1814532 69693562 69699127 60776996 60771421 NC_060933.1 CM039042.1 99.17 True local misassembly 69690895 69698221 60784378 60776997 NC_060933.1 CM039042.1 98.33 True local misassembly 69683272 69684873 60785980 60784379 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = 12409068 57272622 57274203 60785981 60787527 NC_060933.1 CM039042.1 95.89 True relocation, inconsistency = 1762853 59037172 59046092 60796523 60787643 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 7020 59029447 59030151 60797228 60796524 NC_060933.1 CM039042.1 99.91 True indel: indel (> 5bp) 59027700 59029416 60798995 60797279 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 59027007 59027694 60799683 60798996 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 59024657 59027006 60802038 60799689 NC_060933.1 CM039042.1 99.91 True indel: indel (> 5bp) 59022122 59024656 60804583 60802049 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 59021060 59022121 60805655 60804594 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 59017501 59021059 60809219 60805661 NC_060933.1 CM039042.1 99.86 True local misassembly 59015860 59017140 60812797 60811517 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 59015008 59015854 60813644 60812798 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 59014079 59015007 60814583 60813655 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 59012962 59014073 60815695 60814584 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 59010839 59012631 60817808 60816016 NC_060933.1 CM039042.1 99.78 True local misassembly 59009446 59010141 60819156 60818461 NC_060933.1 CM039042.1 99.43 True indel: indel (<= 5bp) 59008084 59009445 60820523 60819162 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 59007130 59008078 60821472 60820524 NC_060933.1 CM039042.1 99.79 True indel: indel (<= 5bp) 59005788 59007129 60822819 60821478 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 59004846 59005787 60823766 60822825 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 59004116 59004845 60824501 60823772 NC_060933.1 CM039042.1 99.59 True indel: indel (> 5bp) 59002837 59004115 60825790 60824512 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 59001994 59002836 60826638 60825796 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 59001225 59001988 60827402 60826639 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 59000363 59000891 60828264 60827736 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = 13343 58984540 58987019 60830744 60828265 NC_060933.1 CM039042.1 99.84 True local misassembly 58982006 58982539 60831278 60830745 NC_060933.1 CM039042.1 99.44 True local misassembly 58978921 58980394 60834453 60832980 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 58977706 58978607 60835683 60834782 NC_060933.1 CM039042.1 99.89 True local misassembly 58975871 58976629 60837543 60836785 NC_060933.1 CM039042.1 99.47 True indel: indel (> 5bp) 58975281 58975811 60838173 60837643 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 58972107 58974847 60841357 60838617 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 58970882 58971828 60842587 60841641 NC_060933.1 CM039042.1 100.0 True local misassembly 58925511 58971866 60889134 60842773 NC_060933.1 CM039042.1 97.69 True relocation, inconsistency = -3873129 62780144 62798639 60907491 60889135 NC_060933.1 CM039042.1 95.21 True fake: not a misassembly (possible transposable element) 69515527 69516912 60908882 60907492 NC_060933.1 CM039042.1 98.86 True fake: not a misassembly (possible transposable element) 62770653 62780109 60918108 60908883 NC_060933.1 CM039042.1 95.86 True relocation, inconsistency = 8819119 53950980 53951533 60918662 60918109 NC_060933.1 CM039042.1 98.92 True relocation, inconsistency = -8773137 62714205 62724090 60928456 60918689 NC_060933.1 CM039042.1 97.18 True relocation, inconsistency = -6790025 69491814 69503916 60940786 60928770 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = 11772243 57716728 57718612 60941745 60943629 NC_060933.1 CM039042.1 99.63 True local misassembly 57719278 57719788 60944015 60944525 NC_060933.1 CM039042.1 99.61 True indel: indel (> 5bp) 57719799 57720749 60944526 60945476 NC_060933.1 CM039042.1 99.58 True indel: indel (<= 5bp) 57720750 57721328 60945482 60946060 NC_060933.1 CM039042.1 99.31 True indel: indel (> 5bp) 57721434 57722405 60946181 60947152 NC_060933.1 CM039042.1 99.18 True local misassembly 57723810 57724342 60948452 60948984 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 3325806 54393961 54394703 60953027 60952285 NC_060933.1 CM039042.1 98.92 True relocation, inconsistency = -4493372 58861765 58887034 60978635 60953326 NC_060933.1 CM039042.1 98.99 True relocation, inconsistency = -10600994 69430928 69462758 61010421 60978636 NC_060933.1 CM039042.1 98.97 True local misassembly 69428728 69429486 61011484 61010726 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 69428123 69428727 61012094 61011490 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 69427002 69428117 61013210 61012095 NC_060933.1 CM039042.1 99.64 True indel: indel (<= 5bp) 69426053 69426996 61014154 61013211 NC_060933.1 CM039042.1 99.79 True indel: indel (<= 5bp) 69425368 69426047 61014834 61014155 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 69423986 69425092 61016206 61015100 NC_060933.1 CM039042.1 99.82 True indel: indel (> 5bp) 69422897 69423985 61017345 61016257 NC_060933.1 CM039042.1 99.91 True local misassembly 69421101 69422371 61018616 61017346 NC_060933.1 CM039042.1 99.61 True indel: indel (> 5bp) 69420101 69421080 61019596 61018617 NC_060933.1 CM039042.1 99.69 True indel: stretch of mismatches 69418951 69419930 61020746 61019767 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 69418439 69418945 61021253 61020747 NC_060933.1 CM039042.1 99.61 True indel: indel (<= 5bp) 69416947 69418433 61022740 61021254 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 69416412 69416941 61023270 61022741 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 10616362 58788649 58800049 61034726 61023271 NC_060933.1 CM039042.1 98.38 True fake: not a misassembly (possible transposable element) 68475872 68477894 61034727 61036764 NC_060933.1 CM039042.1 97.07 True fake: not a misassembly (possible transposable element) 58729729 58789161 61097515 61036765 NC_060933.1 CM039042.1 96.32 True fake: not a misassembly (possible transposable element) 57194987 57196720 61097547 61099280 NC_060933.1 CM039042.1 99.77 True fake: not a misassembly (possible transposable element) 58729729 58732080 61101642 61099281 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 1511304 57194987 57215562 61101669 61122254 NC_060933.1 CM039042.1 99.21 True relocation, inconsistency = -8111 57207452 57244587 61122255 61159190 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = 5809826 63054743 63063900 61168328 61159191 NC_060933.1 CM039042.1 97.44 True relocation, inconsistency = 5786880 57232480 57267862 61168329 61203452 NC_060933.1 CM039042.1 98.82 True local misassembly 57264333 57284343 61203453 61223468 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = 15161 57299505 57300944 61223469 61224908 NC_060933.1 CM039042.1 98.1 True relocation, inconsistency = 10597106 67898051 67915478 61224909 61242376 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = 42278 67957757 67995933 61242377 61280463 NC_060933.1 CM039042.1 99.1 True local misassembly 68001407 68018590 61280464 61297792 NC_060933.1 CM039042.1 97.95 True relocation, inconsistency = 13859023 54133289 54142383 61306932 61297793 NC_060933.1 CM039042.1 97.68 True relocation, inconsistency = 3262151 57404710 57405365 61307108 61307763 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 57405406 57406009 61307764 61308367 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 57406270 57406882 61308618 61309230 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 57407113 57408065 61309466 61310418 NC_060933.1 CM039042.1 99.79 True indel: indel (<= 5bp) 57408071 57408963 61310419 61311311 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 57408969 57410622 61311312 61312965 NC_060933.1 CM039042.1 99.82 True indel: indel (> 5bp) 57411094 57414539 61313422 61316867 NC_060933.1 CM039042.1 99.8 True relocation, inconsistency = 10625771 68040720 68062591 61317277 61339044 NC_060933.1 CM039042.1 97.67 True fake: not a misassembly (possible transposable element) 68045890 68048220 61339045 61341370 NC_060933.1 CM039042.1 98.38 True fake: not a misassembly (possible transposable element) 68058472 68060150 61341371 61343064 NC_060933.1 CM039042.1 98.41 True local misassembly 68062539 68076373 61343316 61357140 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = -10620761 57455613 57462407 61357141 61363940 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = 3351721 54102713 54103587 61365119 61364245 NC_060933.1 CM039042.1 99.77 True local misassembly 54099943 54101549 61367879 61366273 NC_060933.1 CM039042.1 99.81 True local misassembly 54097466 54098884 61370805 61369387 NC_060933.1 CM039042.1 99.79 True indel: indel (> 5bp) 54096350 54097302 61371951 61370999 NC_060933.1 CM039042.1 99.79 True indel: indel (<= 5bp) 54095499 54096344 61372797 61371952 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 54094330 54095015 61373976 61373291 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 54093366 54094063 61374930 61374233 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 3371793 57467549 57515629 61376623 61424274 NC_060933.1 CM039042.1 97.35 True local misassembly 57509297 57517032 61424275 61431980 NC_060933.1 CM039042.1 96.24 True local misassembly 57510505 57543215 61431981 61464231 NC_060933.1 CM039042.1 96.76 True relocation, inconsistency = 10638647 68181863 68182425 61464232 61464794 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 68182863 68183606 61465237 61465980 NC_060933.1 CM039042.1 98.79 True indel: stretch of mismatches 68183857 68184552 61466231 61466926 NC_060933.1 CM039042.1 99.86 True indel: stretch of mismatches 68184660 68186089 61467034 61468463 NC_060933.1 CM039042.1 99.93 True indel: stretch of mismatches 68186344 68188102 61468718 61470476 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 68188103 68189229 61470482 61471608 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 68189235 68190214 61471609 61472588 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 68190215 68191237 61472594 61473616 NC_060933.1 CM039042.1 100.0 True local misassembly 68191819 68193973 61474203 61476357 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 68194244 68195161 61476643 61477560 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = -14518 68196338 68198434 61493255 61495351 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 68198750 68201801 61495677 61498728 NC_060933.1 CM039042.1 99.87 True local misassembly 68202470 68202997 61499402 61499929 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 68203409 68204566 61500347 61501504 NC_060933.1 CM039042.1 100.0 True local misassembly 68206703 68258746 61501505 61554176 NC_060933.1 CM039042.1 97.9 True relocation, inconsistency = -10654732 57604015 57606685 61554177 61556872 NC_060933.1 CM039042.1 96.19 True local misassembly 57605132 57612924 61556873 61564460 NC_060933.1 CM039042.1 96.14 True relocation, inconsistency = 3503466 54071159 54101665 61595476 61564461 NC_060933.1 CM039042.1 96.38 True relocation, inconsistency = 3607293 57709582 57714697 61596100 61601310 NC_060933.1 CM039042.1 97.34 True relocation, inconsistency = 11775754 69490843 69499759 61610668 61601702 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = 11775644 57712128 57714573 61611294 61613714 NC_060933.1 CM039042.1 96.28 True local misassembly 57715194 57728720 61614135 61627616 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = -20453 57708299 57711707 61627648 61631166 NC_060933.1 CM039042.1 95.73 True local misassembly 57712128 57714573 61631797 61634217 NC_060933.1 CM039042.1 96.28 True local misassembly 57715194 57748508 61634638 61668341 NC_060933.1 CM039042.1 97.81 True relocation, inconsistency = 12133904 69882413 69885268 61671217 61668342 NC_060933.1 CM039042.1 98.12 True local misassembly 69873710 69882073 61680181 61671833 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = 1480006 68390514 68393703 61680182 61683366 NC_060933.1 CM039042.1 98.96 True local misassembly 68396347 68396976 61683391 61684020 NC_060933.1 CM039042.1 99.85 True local misassembly 68400026 68403156 61684021 61687151 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 68403162 68404279 61687152 61688269 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 68404285 68406976 61688270 61690961 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 68407471 68408323 61691391 61692243 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 68408324 68409560 61692249 61693485 NC_060933.1 CM039042.1 99.92 True local misassembly 68409561 68410224 61700080 61700743 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 68410230 68411191 61700744 61701705 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 68411192 68412594 61701721 61703123 NC_060933.1 CM039042.1 99.93 True indel: stretch of mismatches 68412845 68413683 61703374 61704212 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 68413689 68416978 61704213 61707502 NC_060933.1 CM039042.1 99.76 True indel: indel (<= 5bp) 68417393 68418221 61707922 61708750 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 68418232 68419900 61708751 61710419 NC_060933.1 CM039042.1 99.76 True indel: indel (<= 5bp) 68419906 68420593 61710420 61711107 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 68420848 68421965 61711347 61712464 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 68421966 68423083 61712470 61713587 NC_060933.1 CM039042.1 99.73 True indel: stretch of mismatches 68423403 68424288 61713907 61714792 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 68424294 68425341 61714793 61715840 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 68425342 68427090 61715846 61717594 NC_060933.1 CM039042.1 99.89 True indel: stretch of mismatches 68427246 68429145 61717750 61719649 NC_060933.1 CM039042.1 99.87 True relocation, inconsistency = -10619029 57810117 57817959 61719650 61727452 NC_060933.1 CM039042.1 95.8 True relocation, inconsistency = 10628498 68446458 68473866 61727453 61755253 NC_060933.1 CM039042.1 97.64 True relocation, inconsistency = -10629440 57844427 57861868 61755254 61772715 NC_060933.1 CM039042.1 98.89 True relocation, inconsistency = 10644278 68506520 68507877 61773089 61774446 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 68507878 68511035 61774502 61777659 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 68511036 68512489 61777665 61779118 NC_060933.1 CM039042.1 99.93 True relocation, inconsistency = -10648754 57864445 57873912 61779828 61789320 NC_060933.1 CM039042.1 98.74 True relocation, inconsistency = 10655491 68529517 68530482 61789434 61790399 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 68530484 68531056 61790400 61790972 NC_060933.1 CM039042.1 99.65 True indel: indel (<= 5bp) 68531057 68532102 61790978 61792023 NC_060933.1 CM039042.1 99.9 True relocation, inconsistency = 5264785 63263490 63264140 61794805 61794155 NC_060933.1 CM039042.1 98.31 True indel: indel (<= 5bp) 63262646 63263484 61795644 61794806 NC_060933.1 CM039042.1 98.69 True local misassembly 63258816 63260743 61799489 61797562 NC_060933.1 CM039042.1 98.96 True indel: indel (<= 5bp) 63258232 63258815 61800078 61799495 NC_060933.1 CM039042.1 98.8 True local misassembly 63255311 63256099 61802794 61802006 NC_060933.1 CM039042.1 99.11 True local misassembly 63252627 63253439 61805437 61804625 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = 8816033 54431476 54433403 61810555 61808628 NC_060933.1 CM039042.1 98.96 True indel: indel (<= 5bp) 54430892 54431475 61811144 61810561 NC_060933.1 CM039042.1 98.8 True local misassembly 54429084 54429720 61812667 61812031 NC_060933.1 CM039042.1 98.74 True indel: indel (> 5bp) 54427911 54428699 61813880 61813092 NC_060933.1 CM039042.1 98.99 True local misassembly 54425232 54425897 61816518 61815853 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 2114260 52303188 52310106 61824297 61817384 NC_060933.1 CM039042.1 95.52 True relocation, inconsistency = -8690127 60991482 60991986 61826130 61825626 NC_060933.1 CM039042.1 98.22 True local misassembly 60989793 60990596 61827803 61827000 NC_060933.1 CM039042.1 98.38 True relocation, inconsistency = -2262875 63250830 63252066 61829641 61828405 NC_060933.1 CM039042.1 98.38 True relocation, inconsistency = 10943381 52303188 52306877 61833900 61830213 NC_060933.1 CM039042.1 96.33 True relocation, inconsistency = -8689972 60991482 60991986 61835578 61835074 NC_060933.1 CM039042.1 98.22 True local misassembly 60989803 60990596 61837236 61836443 NC_060933.1 CM039042.1 98.61 True local misassembly 60987904 60988594 61839000 61838310 NC_060933.1 CM039042.1 98.26 True local misassembly 60986099 60987184 61840795 61839710 NC_060933.1 CM039042.1 99.17 True local misassembly 60984026 60984540 61842948 61842434 NC_060933.1 CM039042.1 98.83 True local misassembly 60982909 60983532 61844125 61843502 NC_060933.1 CM039042.1 99.52 True local misassembly 60980446 60981010 61846953 61846389 NC_060933.1 CM039042.1 99.12 True relocation, inconsistency = -10193042 71171159 71171846 61849282 61848595 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = 16752128 54417350 54417970 61850963 61850343 NC_060933.1 CM039042.1 99.19 True indel: indel (> 5bp) 54416579 54417107 61851709 61851181 NC_060933.1 CM039042.1 99.24 True indel: indel (> 5bp) 54415897 54416568 61852381 61851710 NC_060933.1 CM039042.1 99.55 True fake: not a misassembly (possible transposable element) 58755322 58761346 61861242 61855198 NC_060933.1 CM039042.1 97.57 True fake: not a misassembly (possible transposable element) 54397628 54398526 61865017 61864114 NC_060933.1 CM039042.1 97.66 True local misassembly 54395561 54396972 61866409 61865018 NC_060933.1 CM039042.1 97.88 True relocation, inconsistency = -6594177 60987678 60988727 61868469 61867420 NC_060933.1 CM039042.1 98.67 True local misassembly 60986099 60987184 61870058 61868973 NC_060933.1 CM039042.1 99.17 True local misassembly 60984026 60984540 61872196 61871682 NC_060933.1 CM039042.1 99.03 True local misassembly 60980446 60981010 61876216 61875652 NC_060933.1 CM039042.1 99.12 True relocation, inconsistency = -10193037 71171159 71171846 61878540 61877853 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = 16752128 54417350 54417970 61880221 61879601 NC_060933.1 CM039042.1 99.19 True fake: not a misassembly (possible transposable element) 58755322 58761346 61890525 61884476 NC_060933.1 CM039042.1 97.87 True fake: not a misassembly (possible transposable element) 54397623 54399104 61894675 61893199 NC_060933.1 CM039042.1 97.05 True relocation, inconsistency = -8826745 63221127 63224367 61897886 61894676 NC_060933.1 CM039042.1 96.3 True relocation, inconsistency = 4333973 58883687 58886887 61901333 61898153 NC_060933.1 CM039042.1 95.87 True relocation, inconsistency = 7658484 51223839 51225202 61902692 61901334 NC_060933.1 CM039042.1 95.49 True relocation, inconsistency = -48574 51270460 51271985 61904630 61903120 NC_060933.1 CM039042.1 98.49 True relocation, inconsistency = -11958973 63221127 63226494 61912921 61907569 NC_060933.1 CM039042.1 96.87 True relocation, inconsistency = -6267934 69485629 69488976 61916342 61913006 NC_060933.1 CM039042.1 96.28 True relocation, inconsistency = 18174943 51309235 51310685 61917783 61916343 NC_060933.1 CM039042.1 96.67 True fake: not a misassembly (possible transposable element) 51298048 51298759 61919529 61918818 NC_060933.1 CM039042.1 99.58 True fake: not a misassembly (possible transposable element) 51305617 51307407 61921421 61919606 NC_060933.1 CM039042.1 95.26 True relocation, inconsistency = 68636 51231724 51234969 61926668 61923433 NC_060933.1 CM039042.1 96.56 True relocation, inconsistency = -57397 51287127 51288671 61928682 61927118 NC_060933.1 CM039042.1 97.26 True relocation, inconsistency = 17161312 68449992 68451060 61928691 61929754 NC_060933.1 CM039042.1 98.78 True relocation, inconsistency = -10543058 57908363 57911973 61930115 61933723 NC_060933.1 CM039042.1 99.03 True relocation, inconsistency = 882380 58795771 58796319 61935689 61935141 NC_060933.1 CM039042.1 98.18 True relocation, inconsistency = -423017 59216841 59218023 61937621 61936454 NC_060933.1 CM039042.1 97.05 True relocation, inconsistency = 9321128 68540465 68541460 61938935 61939930 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 68541536 68542313 61940021 61940798 NC_060933.1 CM039042.1 99.68 True local misassembly 68536262 68546529 61940799 61951046 NC_060933.1 CM039042.1 99.22 True fake: not a misassembly (possible transposable element) 57912970 57914210 61951047 61952292 NC_060933.1 CM039042.1 96.81 True fake: not a misassembly (possible transposable element) 68543667 68547643 61952293 61956299 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = -10624985 57923291 57931218 61956932 61964864 NC_060933.1 CM039042.1 99.57 True relocation, inconsistency = 10635332 68568023 68603925 61966337 62002254 NC_060933.1 CM039042.1 99.3 True relocation, inconsistency = -10582606 58021320 58060936 62002255 62041286 NC_060933.1 CM039042.1 98.01 True relocation, inconsistency = 16839032 74901885 74902513 62043831 62043203 NC_060933.1 CM039042.1 97.93 True local misassembly 74899510 74900112 62046132 62045530 NC_060933.1 CM039042.1 99.0 True indel: indel (> 5bp) 74898381 74898985 62047226 62046622 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = 6170186 68685240 68728109 62047312 62090241 NC_060933.1 CM039042.1 98.84 True relocation, inconsistency = -10604017 58124093 58132734 62090242 62098913 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = 10620195 68752930 68767066 62098914 62113120 NC_060933.1 CM039042.1 98.26 True local misassembly 68768077 68780637 62114601 62127295 NC_060933.1 CM039042.1 98.47 True local misassembly 68779221 68780637 62127596 62129007 NC_060933.1 CM039042.1 98.24 True relocation, inconsistency = 22496 68806015 68807427 62131889 62133275 NC_060933.1 CM039042.1 97.47 True local misassembly 68808092 68848873 62133276 62174046 NC_060933.1 CM039042.1 99.3 True local misassembly 68845857 68846851 62174810 62175818 NC_060933.1 CM039042.1 97.43 True fake: not a misassembly (possible transposable element) 72522814 72523363 62175942 62176491 NC_060933.1 CM039042.1 98.55 True fake: not a misassembly (possible transposable element) 68850010 68920604 62177036 62245012 NC_060933.1 CM039042.1 95.53 True local misassembly 68920576 68928580 62245753 62253703 NC_060933.1 CM039042.1 98.8 True local misassembly 68926164 68946322 62253704 62273917 NC_060933.1 CM039042.1 99.15 True relocation, inconsistency = 7425 68953748 68960341 62273918 62280441 NC_060933.1 CM039042.1 98.7 True local misassembly 68956407 68960732 62280484 62284809 NC_060933.1 CM039042.1 99.39 True local misassembly 68959296 68971244 62284810 62296768 NC_060933.1 CM039042.1 99.33 True relocation, inconsistency = -7817 68963428 69011224 62296769 62343446 NC_060933.1 CM039042.1 97.07 True relocation, inconsistency = 6516626 62445389 62446801 62344860 62343447 NC_060933.1 CM039042.1 95.1 True relocation, inconsistency = 4063839 58379902 58381078 62345332 62346523 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = 10633253 69017435 69026033 62349627 62358275 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = -10636507 58397022 58398972 62365771 62367727 NC_060933.1 CM039042.1 98.91 True relocation, inconsistency = 10628298 69027271 69035012 62367728 62375344 NC_060933.1 CM039042.1 97.89 True relocation, inconsistency = -10625319 58410055 58410989 62375706 62376640 NC_060933.1 CM039042.1 99.79 True indel: indel (<= 5bp) 58410990 58412057 62376646 62377713 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 58412058 58413090 62377719 62378751 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 58413106 58413645 62378752 62379291 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 58413646 58414173 62379297 62379824 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 58414174 58416433 62379830 62382089 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 58416434 58417666 62382095 62383327 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 8413 58426080 58427921 62383328 62385169 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 58427922 58429045 62385180 62386303 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 58429051 58430243 62386304 62387496 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 58430249 58431840 62387497 62389088 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 58432106 58432889 62389364 62390147 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 58432890 58435518 62390153 62392781 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 58435524 58437944 62392782 62395202 NC_060933.1 CM039042.1 99.92 True indel: stretch of mismatches 58438100 58440156 62395358 62397414 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 58440162 58440704 62397415 62397957 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 58440781 58441854 62398044 62399117 NC_060933.1 CM039042.1 99.72 True indel: indel (<= 5bp) 58441855 58443041 62399123 62400309 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 58443047 58443604 62400310 62400867 NC_060933.1 CM039042.1 100.0 True local misassembly 58444169 58445336 62401422 62402589 NC_060933.1 CM039042.1 99.57 True indel: indel (<= 5bp) 58445337 58447475 62402595 62404733 NC_060933.1 CM039042.1 99.95 True indel: stretch of mismatches 58447621 58449310 62404879 62406568 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 58449311 58449819 62406599 62407107 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 58449820 58452909 62407113 62410202 NC_060933.1 CM039042.1 99.77 True indel: indel (<= 5bp) 58452910 58453721 62410208 62411019 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 58453722 58454365 62411025 62411668 NC_060933.1 CM039042.1 99.84 True local misassembly 58454921 58455461 62412204 62412744 NC_060933.1 CM039042.1 99.63 True indel: indel (<= 5bp) 58455591 58457086 62412879 62414374 NC_060933.1 CM039042.1 99.73 True indel: indel (> 5bp) 58457310 58458063 62414588 62415341 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 58458084 58458767 62415342 62416025 NC_060933.1 CM039042.1 99.71 True local misassembly 58458868 58463877 62416026 62421035 NC_060933.1 CM039042.1 99.74 True relocation, inconsistency = 10630956 69096267 69096834 62422469 62423036 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 69096836 69097607 62423037 62423808 NC_060933.1 CM039042.1 99.87 True local misassembly 69097579 69122376 62424609 62449411 NC_060933.1 CM039042.1 99.18 True local misassembly 69115802 69130998 62449446 62464622 NC_060933.1 CM039042.1 98.85 True relocation, inconsistency = -10603446 58527621 58528838 62464691 62465913 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = -7624 58521215 58549905 62465914 62494583 NC_060933.1 CM039042.1 99.12 True relocation, inconsistency = 16827 58566733 58571315 62494584 62499196 NC_060933.1 CM039042.1 98.52 True local misassembly 58566168 58572284 62499197 62505333 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = 10630540 69202825 69205749 62505334 62508268 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = 13700 69219450 69220837 62508269 62509676 NC_060933.1 CM039042.1 98.27 True local misassembly 69219297 69270286 62509768 62560651 NC_060933.1 CM039042.1 98.3 True local misassembly 69270317 69310283 62560796 62600363 NC_060933.1 CM039042.1 98.04 True relocation, inconsistency = -10616309 58693975 58708020 62600364 62614249 NC_060933.1 CM039042.1 97.49 True relocation, inconsistency = 1508442 57178518 57185486 62621149 62614296 NC_060933.1 CM039042.1 97.89 True relocation, inconsistency = -10607713 67783102 67786230 62624283 62621150 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 10732303 57043553 57050223 62631549 62624859 NC_060933.1 CM039042.1 96.93 True relocation, inconsistency = 8379578 65429802 65430969 62631550 62632712 NC_060933.1 CM039042.1 97.67 True relocation, inconsistency = -5089021 60343419 60344008 62634183 62634772 NC_060933.1 CM039042.1 98.81 True indel: stretch of mismatches 60344093 60344726 62634857 62635490 NC_060933.1 CM039042.1 99.53 True indel: indel (> 5bp) 60344973 60346073 62635712 62636812 NC_060933.1 CM039042.1 98.82 True relocation, inconsistency = 3294191 57043553 57050223 62644056 62637371 NC_060933.1 CM039042.1 96.84 True relocation, inconsistency = 2206935 54835450 54836617 62644057 62645219 NC_060933.1 CM039042.1 97.67 True relocation, inconsistency = 5245294 60082737 60091998 62655396 62646045 NC_060933.1 CM039042.1 95.87 True relocation, inconsistency = 264258 60356320 60360779 62655460 62659904 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = 7288612 67649392 67658441 62668955 62659905 NC_060933.1 CM039042.1 99.59 True relocation, inconsistency = 10624629 57016475 57024762 62677243 62668956 NC_060933.1 CM039042.1 99.23 True relocation, inconsistency = 16662440 73689193 73690438 62679234 62680479 NC_060933.1 CM039042.1 95.62 True relocation, inconsistency = 18931643 54752649 54753504 62685380 62684525 NC_060933.1 CM039042.1 98.13 True relocation, inconsistency = 5118210 49621105 49621677 62698704 62698142 NC_060933.1 CM039042.1 95.16 True relocation, inconsistency = 23312036 72953297 72954504 62718288 62719490 NC_060933.1 CM039042.1 95.44 True relocation, inconsistency = 1807797 74762597 74764953 62722157 62719786 NC_060933.1 CM039042.1 96.03 True relocation, inconsistency = -997726 75752554 75753122 62729926 62729358 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 2644985 73087667 73089699 62747796 62749853 NC_060933.1 CM039042.1 95.01 True relocation, inconsistency = 18006883 55073163 55073740 62757479 62756897 NC_060933.1 CM039042.1 95.75 True relocation, inconsistency = 14620750 69694533 69695428 62757522 62758427 NC_060933.1 CM039042.1 96.16 True fake: not a misassembly (possible transposable element) 56260212 56261675 62760480 62761973 NC_060933.1 CM039042.1 96.59 True fake: not a misassembly (possible transposable element) 69694533 69695428 62763029 62763924 NC_060933.1 CM039042.1 96.14 True relocation, inconsistency = -13447010 56250466 56251929 62765972 62767475 NC_060933.1 CM039042.1 95.94 True relocation, inconsistency = 9698034 65950005 65951932 62767517 62769449 NC_060933.1 CM039042.1 95.91 True relocation, inconsistency = 5431721 71386219 71387558 62772015 62773379 NC_060933.1 CM039042.1 95.42 True relocation, inconsistency = 20281742 51101332 51101893 62776524 62775963 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = 5220310 56322560 56323374 62776881 62777695 NC_060933.1 CM039042.1 98.77 True relocation, inconsistency = 10588979 66915756 66916262 62781098 62781604 NC_060933.1 CM039042.1 96.65 True relocation, inconsistency = 8761776 75683768 75684341 62787907 62787334 NC_060933.1 CM039042.1 98.61 True relocation, inconsistency = 24600259 51079092 51079733 62792324 62791683 NC_060933.1 CM039042.1 98.75 True indel: indel (<= 5bp) 51078576 51079091 62792845 62792330 NC_060933.1 CM039042.1 98.45 True local misassembly 51077131 51077680 62795412 62794863 NC_060933.1 CM039042.1 98.0 True inversion 51077484 51078692 62798623 62799811 NC_060933.1 CM039042.1 96.62 True local misassembly 51078388 51080121 62800524 62802233 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = 24568266 75649910 75653001 62806837 62803756 NC_060933.1 CM039042.1 96.22 True relocation, inconsistency = -558799 76205528 76206647 62810014 62808899 NC_060933.1 CM039042.1 98.83 True local misassembly 76205503 76207196 62811704 62810015 NC_060933.1 CM039042.1 97.34 True local misassembly 76205528 76207176 62813364 62811705 NC_060933.1 CM039042.1 96.41 True local misassembly 76202956 76207196 62817721 62813365 NC_060933.1 CM039042.1 95.48 True relocation, inconsistency = 6293617 69903647 69907255 62819805 62823423 NC_060933.1 CM039042.1 97.64 True local misassembly 69907469 69908931 62824007 62825464 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = -10633645 59275359 59278423 62825537 62828626 NC_060933.1 CM039042.1 96.76 True local misassembly 59278637 59283229 62829265 62833871 NC_060933.1 CM039042.1 97.99 True relocation, inconsistency = 10642510 69926234 69928590 62834366 62836767 NC_060933.1 CM039042.1 95.71 True relocation, inconsistency = -12672 69915958 69923063 62836807 62843877 NC_060933.1 CM039042.1 97.75 True relocation, inconsistency = 14707 69937771 69939391 62843878 62845493 NC_060933.1 CM039042.1 97.84 True relocation, inconsistency = 3340982 73280374 73281466 62846586 62845494 NC_060933.1 CM039042.1 99.28 True local misassembly 73278962 73279829 62847863 62846996 NC_060933.1 CM039042.1 99.19 True fake: not a misassembly (possible transposable element) 59342587 59344459 62848098 62849930 NC_060933.1 CM039042.1 96.7 True fake: not a misassembly (possible transposable element) 73273000 73273788 62851753 62850965 NC_060933.1 CM039042.1 98.99 True indel: indel (> 5bp) 73272270 73272937 62852477 62851810 NC_060933.1 CM039042.1 99.55 True local misassembly 73271120 73271663 62853578 62853035 NC_060933.1 CM039042.1 99.63 True local misassembly 73269429 73270259 62855249 62854419 NC_060933.1 CM039042.1 99.64 True local misassembly 73267646 73268343 62856783 62856086 NC_060933.1 CM039042.1 98.57 True relocation, inconsistency = 16250174 57015085 57016737 62859210 62857518 NC_060933.1 CM039042.1 96.93 True relocation, inconsistency = -9194064 66206390 66207143 62861969 62861216 NC_060933.1 CM039042.1 99.34 True local misassembly 66198686 66199318 62862741 62862104 NC_060933.1 CM039042.1 98.28 True relocation, inconsistency = 7312 66187089 66191360 62867031 62862755 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 3871687 70063114 70066194 62867098 62870162 NC_060933.1 CM039042.1 96.85 True relocation, inconsistency = 14456331 55599344 55606782 62877607 62870163 NC_060933.1 CM039042.1 96.51 True relocation, inconsistency = -10579058 66174872 66178401 62881167 62877608 NC_060933.1 CM039042.1 96.65 True local misassembly 66173600 66174372 62882778 62882006 NC_060933.1 CM039042.1 99.61 True relocation, inconsistency = -7049742 73212976 73223206 62893180 62882914 NC_060933.1 CM039042.1 96.44 True relocation, inconsistency = 17659253 55547135 55553433 62899598 62893470 NC_060933.1 CM039042.1 95.63 True relocation, inconsistency = -16684 55555515 55561878 62908011 62901539 NC_060933.1 CM039042.1 96.41 True relocation, inconsistency = 4583833 50971039 50971681 62908709 62908012 NC_060933.1 CM039042.1 95.19 True relocation, inconsistency = 28542 50938407 50939563 62912794 62911643 NC_060933.1 CM039042.1 95.48 True relocation, inconsistency = 19138825 70078839 70079843 62913245 62914259 NC_060933.1 CM039042.1 98.13 True relocation, inconsistency = 8795 70088845 70091547 62914466 62917213 NC_060933.1 CM039042.1 96.39 True relocation, inconsistency = 13073331 57014532 57015374 62918195 62917353 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 57010907 57014531 62921825 62918201 NC_060933.1 CM039042.1 99.89 True local misassembly 57007092 57008040 62922870 62921922 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 57006460 57007091 62923507 62922876 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 57004707 57006439 62925240 62923508 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 57002162 57004701 62927780 62925241 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 57001584 57002156 62928353 62927781 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 57000026 57001573 62929901 62928354 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 56997920 57000025 62932012 62929907 NC_060933.1 CM039042.1 99.95 True indel: indel (> 5bp) 56994998 56997919 62934944 62932023 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 56994040 56994752 62935892 62935180 NC_060933.1 CM039042.1 99.86 True local misassembly 56992345 56993224 62937577 62936698 NC_060933.1 CM039042.1 100.0 True local misassembly 56991287 56991974 62938814 62938127 NC_060933.1 CM039042.1 99.85 True local misassembly 56989486 56991078 62940930 62939338 NC_060933.1 CM039042.1 99.94 True indel: indel (<= 5bp) 56988064 56989480 62942347 62940931 NC_060933.1 CM039042.1 99.93 True local misassembly 56986366 56986880 62944030 62943516 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 56983486 56986360 62946905 62944031 NC_060933.1 CM039042.1 99.9 True indel: indel (> 5bp) 56982217 56983406 62948164 62946975 NC_060933.1 CM039042.1 99.92 True indel: indel (> 5bp) 56981045 56982216 62949346 62948175 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 56980207 56980790 62950184 62949601 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 56979297 56979876 62951104 62950525 NC_060933.1 CM039042.1 100.0 True local misassembly 56971481 56972079 62951946 62951348 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 56970200 56971475 62953222 62951947 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 56968438 56970194 62954979 62953223 NC_060933.1 CM039042.1 99.94 True local misassembly 56965337 56966386 62957205 62956156 NC_060933.1 CM039042.1 100.0 True local misassembly 56963497 56964008 62958357 62957846 NC_060933.1 CM039042.1 99.41 True indel: indel (> 5bp) 56962234 56963092 62959690 62958832 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 56961669 56962228 62960250 62959691 NC_060933.1 CM039042.1 99.46 True indel: indel (<= 5bp) 56957216 56961663 62964698 62960251 NC_060933.1 CM039042.1 99.82 True indel: indel (> 5bp) 56956609 56957215 62965315 62964709 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 56955370 56956251 62966539 62965658 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 56954469 56955364 62967435 62966540 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 56953431 56954468 62968478 62967441 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 56952035 56953425 62969869 62968479 NC_060933.1 CM039042.1 99.78 True indel: indel (<= 5bp) 56951363 56952034 62970546 62969875 NC_060933.1 CM039042.1 99.55 True local misassembly 56949234 56950598 62972640 62971276 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 56943677 56949233 62978202 62972646 NC_060933.1 CM039042.1 99.89 True local misassembly 56941888 56942945 62979996 62978939 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 56941084 56941882 62980795 62979997 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 56939493 56941073 62982376 62980796 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 56938009 56939482 62983850 62982377 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 56936319 56937518 62985540 62984341 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = -10615458 67531993 67551776 63004944 62985541 NC_060933.1 CM039042.1 97.6 True local misassembly 67522790 67530748 63012938 63004945 NC_060933.1 CM039042.1 98.55 True relocation, inconsistency = 10619472 56890433 56902284 63026227 63013972 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = -10614602 67501811 67504889 63029476 63026373 NC_060933.1 CM039042.1 95.89 True relocation, inconsistency = 16886890 50612847 50613645 63031535 63030752 NC_060933.1 CM039042.1 95.52 True local misassembly 50612507 50613054 63034616 63034069 NC_060933.1 CM039042.1 97.45 True relocation, inconsistency = 656867 49954357 49955155 63035884 63035101 NC_060933.1 CM039042.1 95.52 True relocation, inconsistency = -283697 50234973 50235520 63038965 63038418 NC_060933.1 CM039042.1 97.45 True relocation, inconsistency = 194212 50036448 50039257 63043234 63040469 NC_060933.1 CM039042.1 96.21 True relocation, inconsistency = -17470919 67443588 67501816 63106792 63048785 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 31263 67411418 67412324 63107699 63106793 NC_060933.1 CM039042.1 99.9 True relocation, inconsistency = 10592961 56810737 56818456 63115454 63107700 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = -10612071 67417179 67422807 63121113 63115455 NC_060933.1 CM039042.1 99.02 True local misassembly 67403058 67410452 63128586 63121187 NC_060933.1 CM039042.1 98.51 True relocation, inconsistency = -8584 67408188 67411641 63132061 63128587 NC_060933.1 CM039042.1 96.01 True local misassembly 67399777 67400709 63134397 63133470 NC_060933.1 CM039042.1 99.32 True local misassembly 67383038 67395598 63146968 63134398 NC_060933.1 CM039042.1 99.44 True local misassembly 67379899 67382083 63150011 63147822 NC_060933.1 CM039042.1 98.36 True local misassembly 67373149 67373671 63150565 63150043 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = 10553944 56816630 56817523 63153140 63152247 NC_060933.1 CM039042.1 99.22 True local misassembly 56813692 56814533 63156103 63155262 NC_060933.1 CM039042.1 98.93 True indel: stretch of mismatches 56812723 56813271 63157072 63156524 NC_060933.1 CM039042.1 99.45 True local misassembly 56811560 56812063 63158090 63157587 NC_060933.1 CM039042.1 98.02 True relocation, inconsistency = 31091 56777679 56778969 63160880 63159590 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = -11921 56788243 56789003 63162237 63161477 NC_060933.1 CM039042.1 99.08 True local misassembly 56786445 56787090 63164140 63163495 NC_060933.1 CM039042.1 98.61 True indel: stretch of mismatches 56785617 56786348 63164968 63164237 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 35442 56745334 56747673 63169799 63167470 NC_060933.1 CM039042.1 97.62 True fake: not a misassembly (possible transposable element) 63031129 63032163 63171254 63170215 NC_060933.1 CM039042.1 96.84 True fake: not a misassembly (possible transposable element) 56747151 56748166 63172932 63171907 NC_060933.1 CM039042.1 96.69 True fake: not a misassembly (possible transposable element) 56783852 56786352 63175926 63173456 NC_060933.1 CM039042.1 95.61 True fake: not a misassembly (possible transposable element) 56745334 56747673 63179046 63176708 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = -10692486 67432621 67434833 63184250 63182033 NC_060933.1 CM039042.1 97.27 True relocation, inconsistency = 10654675 56773961 56775209 63188240 63186987 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = -10620359 67388456 67394319 63194069 63188241 NC_060933.1 CM039042.1 96.16 True relocation, inconsistency = 10607930 56758819 56777708 63216075 63196887 NC_060933.1 CM039042.1 97.59 True relocation, inconsistency = -10605358 67355533 67364176 63224714 63216076 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = 10537565 56813092 56817596 63229620 63225086 NC_060933.1 CM039042.1 96.04 True local misassembly 56815982 56816629 63230581 63229934 NC_060933.1 CM039042.1 99.07 True local misassembly 56814539 56815271 63232064 63231332 NC_060933.1 CM039042.1 99.32 True indel: indel (<= 5bp) 56813941 56814533 63232657 63232065 NC_060933.1 CM039042.1 99.16 True indel: indel (<= 5bp) 56813294 56813935 63233299 63232658 NC_060933.1 CM039042.1 98.6 True indel: indel (<= 5bp) 56812723 56813288 63233865 63233300 NC_060933.1 CM039042.1 99.12 True relocation, inconsistency = 59719 56745145 56752084 63241724 63234785 NC_060933.1 CM039042.1 97.43 True relocation, inconsistency = -10604978 67316218 67350122 63276104 63241725 NC_060933.1 CM039042.1 97.89 True relocation, inconsistency = 10625513 56685535 56690704 63281264 63276105 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = -56891 56739043 56742425 63284647 63281265 NC_060933.1 CM039042.1 98.01 True relocation, inconsistency = 29298 56702213 56709744 63292070 63284648 NC_060933.1 CM039042.1 95.7 True local misassembly 56685357 56700431 63307105 63292071 NC_060933.1 CM039042.1 99.39 True relocation, inconsistency = -10602353 67278421 67287709 63316399 63307106 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = -12334 67277572 67290654 63329602 63316500 NC_060933.1 CM039042.1 99.28 True local misassembly 67274767 67276637 63331473 63329603 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 10603407 56670105 56670864 63332734 63331969 NC_060933.1 CM039042.1 97.91 True local misassembly 56637981 56670869 63365299 63333417 NC_060933.1 CM039042.1 96.06 True relocation, inconsistency = 1912805 54724664 54725175 63365811 63365300 NC_060933.1 CM039042.1 99.83 True relocation, inconsistency = 17525869 72251045 72273109 63365812 63387888 NC_060933.1 CM039042.1 98.23 True relocation, inconsistency = 609283 72882393 72889116 63387889 63394612 NC_060933.1 CM039042.1 98.41 True local misassembly 72883190 72904885 63394664 63416489 NC_060933.1 CM039042.1 98.15 True local misassembly 72908357 72920547 63416490 63428724 NC_060933.1 CM039042.1 98.36 True local misassembly 72919421 72920478 63429783 63430840 NC_060933.1 CM039042.1 99.72 True local misassembly 72920479 72921065 63431041 63431627 NC_060933.1 CM039042.1 99.83 True local misassembly 72921815 72923154 63432347 63433686 NC_060933.1 CM039042.1 100.0 True local misassembly 72923729 72927730 63433687 63437853 NC_060933.1 CM039042.1 95.17 True local misassembly 72931890 72951118 63437854 63457096 NC_060933.1 CM039042.1 98.63 True relocation, inconsistency = 1434797 71489916 71497092 63464253 63457097 NC_060933.1 CM039042.1 98.63 True relocation, inconsistency = 6240247 65225804 65249668 63488229 63464254 NC_060933.1 CM039042.1 97.92 True relocation, inconsistency = -6247624 71468739 71473427 63492873 63488230 NC_060933.1 CM039042.1 98.21 True relocation, inconsistency = 1270839 72744291 72744898 63492898 63493505 NC_060933.1 CM039042.1 99.67 True indel: indel (> 5bp) 72745307 72746055 63493964 63494712 NC_060933.1 CM039042.1 99.33 True indel: indel (> 5bp) 72746315 72747094 63494952 63495731 NC_060933.1 CM039042.1 99.74 True indel: indel (<= 5bp) 72747100 72748206 63495732 63496838 NC_060933.1 CM039042.1 99.55 True indel: indel (> 5bp) 72748607 72749287 63497204 63497884 NC_060933.1 CM039042.1 99.12 True local misassembly 72750850 72752324 63499102 63500576 NC_060933.1 CM039042.1 98.85 True relocation, inconsistency = -5852151 66900346 66902315 63500749 63502726 NC_060933.1 CM039042.1 95.8 True relocation, inconsistency = 12266402 54629743 54630779 63506916 63505891 NC_060933.1 CM039042.1 95.96 True relocation, inconsistency = 18106502 72737282 72742836 63506917 63512516 NC_060933.1 CM039042.1 96.15 True relocation, inconsistency = 18101649 54623638 54635632 63524506 63512517 NC_060933.1 CM039042.1 98.52 True relocation, inconsistency = -16844259 71457090 71467896 63535283 63524507 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = 844722 72312619 72327158 63535284 63549823 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = 872100 71410625 71440518 63579609 63549824 NC_060933.1 CM039042.1 97.79 True local misassembly 71411017 71411811 63580760 63579966 NC_060933.1 CM039042.1 99.87 True local misassembly 71409861 71410468 63581902 63581295 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 71407472 71409704 63584291 63582059 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 71406555 71407144 63585203 63584614 NC_060933.1 CM039042.1 100.0 True local misassembly 71405194 71405798 63587386 63586782 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 71402762 71405193 63589823 63587392 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 71402132 71402650 63590443 63589925 NC_060933.1 CM039042.1 99.61 True indel: stretch of mismatches 71400699 71401680 63591876 63590895 NC_060933.1 CM039042.1 99.69 True indel: indel (<= 5bp) 71398799 71400693 63593771 63591877 NC_060933.1 CM039042.1 99.89 True relocation, inconsistency = 6253196 65130231 65145337 63609342 63594037 NC_060933.1 CM039042.1 96.02 True relocation, inconsistency = -6252048 71381671 71382207 63609950 63609414 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 71380475 71381245 63611152 63610382 NC_060933.1 CM039042.1 100.0 True local misassembly 71379055 71379621 63611719 63611153 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 973264 72353354 72375776 63612188 63634701 NC_060933.1 CM039042.1 97.23 True local misassembly 72372855 72378430 63634702 63640152 NC_060933.1 CM039042.1 96.89 True relocation, inconsistency = 7341642 65025574 65031212 63645821 63640153 NC_060933.1 CM039042.1 98.82 True relocation, inconsistency = -6332921 71344508 71358494 63659778 63645822 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 1055353 72413848 72426078 63659779 63672059 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = 1086749 71324721 71327098 63674452 63672060 NC_060933.1 CM039042.1 99.1 True relocation, inconsistency = 13731 71310285 71310989 63675157 63674453 NC_060933.1 CM039042.1 99.88 True relocation, inconsistency = 10623146 60684575 60687130 63677741 63675166 NC_060933.1 CM039042.1 98.39 True relocation, inconsistency = -10649590 71305308 71334164 63706677 63677742 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = 10657148 60639514 60648159 63715389 63706678 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = 11796665 72444825 72478909 63715390 63749734 NC_060933.1 CM039042.1 98.14 True relocation, inconsistency = 10434 72489344 72491727 63749735 63752118 NC_060933.1 CM039042.1 99.42 True relocation, inconsistency = 3995841 76487569 76488800 63752119 63753335 NC_060933.1 CM039042.1 97.33 True relocation, inconsistency = 5747970 70737483 70738199 63755451 63754735 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = 16850118 53885371 53885982 63755858 63756454 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 18608278 72494261 72497691 63756455 63759791 NC_060933.1 CM039042.1 97.14 True relocation, inconsistency = -14931 72483142 72491727 63760173 63768713 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = 3995841 76487569 76488800 63768714 63769935 NC_060933.1 CM039042.1 97.02 True relocation, inconsistency = 5747970 70737483 70738199 63772051 63771335 NC_060933.1 CM039042.1 98.47 True relocation, inconsistency = 8078303 62657186 62657797 63772458 63773054 NC_060933.1 CM039042.1 97.18 True relocation, inconsistency = 9836463 72494261 72518427 63773055 63797097 NC_060933.1 CM039042.1 98.48 True local misassembly 72522153 72525737 63797098 63800682 NC_060933.1 CM039042.1 98.64 True local misassembly 72526591 72533090 63800683 63807182 NC_060933.1 CM039042.1 98.27 True relocation, inconsistency = 1304915 71214886 71221675 63814002 63807183 NC_060933.1 CM039042.1 97.77 True local misassembly 71203327 71218111 63828878 63814003 NC_060933.1 CM039042.1 95.89 True relocation, inconsistency = 10684137 60513392 60519128 63834671 63828940 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = 13440815 73961592 73967221 63836320 63841949 NC_060933.1 CM039042.1 96.97 True relocation, inconsistency = -1394720 72572502 72580656 63841950 63850114 NC_060933.1 CM039042.1 98.93 True fake: not a misassembly (possible transposable element) 70578914 70584494 63850115 63855716 NC_060933.1 CM039042.1 98.54 True fake: not a misassembly (possible transposable element) 72586923 72587798 63857036 63857911 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 72587814 72589372 63857912 63859470 NC_060933.1 CM039042.1 99.94 True relocation, inconsistency = 12090365 60479536 60497448 63877383 63859471 NC_060933.1 CM039042.1 97.79 True relocation, inconsistency = 16950 60451783 60462585 63888126 63877384 NC_060933.1 CM039042.1 98.88 True relocation, inconsistency = -10649367 71055219 71101149 63933772 63888127 NC_060933.1 CM039042.1 98.21 True local misassembly 71015236 71057232 63975630 63933773 NC_060933.1 CM039042.1 98.27 True relocation, inconsistency = 10649935 60339842 60365300 64001439 63975631 NC_060933.1 CM039042.1 96.9 True relocation, inconsistency = 255262 60068681 60083613 64002406 64017388 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 12025622 72109236 72113512 64017389 64021575 NC_060933.1 CM039042.1 96.63 True relocation, inconsistency = 11755457 60352961 60353580 64022393 64021774 NC_060933.1 CM039042.1 99.68 True local misassembly 60351818 60352337 64023570 64023051 NC_060933.1 CM039042.1 99.42 True indel: stretch of mismatches 60350273 60351472 64025115 64023916 NC_060933.1 CM039042.1 99.83 True local misassembly 60347865 60349593 64027868 64026140 NC_060933.1 CM039042.1 99.94 True indel: indel (> 5bp) 60346532 60347864 64029211 64027879 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 60345958 60346521 64029775 64029212 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 60344910 60345885 64030833 64029858 NC_060933.1 CM039042.1 99.49 True indel: indel (<= 5bp) 60344103 60344904 64031635 64030834 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 60343465 60344092 64032263 64031636 NC_060933.1 CM039042.1 99.68 True indel: indel (<= 5bp) 60342818 60343459 64032905 64032264 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = 11734388 72078077 72092323 64033135 64047293 NC_060933.1 CM039042.1 96.3 True relocation, inconsistency = 1097407 70977557 70980669 64050396 64047294 NC_060933.1 CM039042.1 98.8 True relocation, inconsistency = 195260 70773980 70782296 64050397 64058694 NC_060933.1 CM039042.1 97.81 True relocation, inconsistency = 10457642 60304012 60316312 64070995 64058720 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = 12357631 72673944 72679513 64070996 64076504 NC_060933.1 CM039042.1 98.55 True relocation, inconsistency = 12377535 60278294 60296408 64094719 64076505 NC_060933.1 CM039042.1 98.44 True relocation, inconsistency = 12395051 72691635 72693680 64094895 64096935 NC_060933.1 CM039042.1 99.36 True fake: not a misassembly (possible transposable element) 70927703 70930942 64100170 64096936 NC_060933.1 CM039042.1 98.3 True fake: not a misassembly (possible transposable element) 72694595 72725390 64100171 64131091 NC_060933.1 CM039042.1 98.08 True local misassembly 72730731 72738078 64131092 64138538 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = 18084558 54644350 54646172 64140361 64138539 NC_060933.1 CM039042.1 99.19 True local misassembly 54641249 54642591 64143482 64142140 NC_060933.1 CM039042.1 99.7 True indel: indel (<= 5bp) 54640678 54641218 64144058 64143518 NC_060933.1 CM039042.1 100.0 True local misassembly 54638571 54639239 64144866 64144198 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = 18111745 72750985 72755042 64144867 64148924 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = 1903822 70842147 70846766 64153945 64149321 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = -1841391 72675741 72683537 64161752 64153946 NC_060933.1 CM039042.1 97.73 True relocation, inconsistency = 1837650 70817401 70838090 64182266 64161753 NC_060933.1 CM039042.1 97.98 True relocation, inconsistency = 10646057 60169930 60170461 64183680 64183149 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60168972 60169924 64184633 64183681 NC_060933.1 CM039042.1 99.9 True local misassembly 60167626 60168277 64185669 64185018 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 60167082 60167625 64186214 64185671 NC_060933.1 CM039042.1 99.82 True indel: indel (> 5bp) 60166064 60166806 64187242 64186500 NC_060933.1 CM039042.1 99.6 True indel: indel (<= 5bp) 60165559 60166058 64187742 64187243 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 60163726 60165558 64189580 64187748 NC_060933.1 CM039042.1 99.62 True relocation, inconsistency = -11994354 72156402 72157594 64191258 64190066 NC_060933.1 CM039042.1 99.41 True local misassembly 72154410 72155782 64193155 64191783 NC_060933.1 CM039042.1 99.71 True indel: indel (<= 5bp) 72153552 72154177 64194018 64193393 NC_060933.1 CM039042.1 99.68 True indel: indel (> 5bp) 72152956 72153541 64194604 64194019 NC_060933.1 CM039042.1 99.66 True local misassembly 72151396 72152174 64196164 64195386 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 72150808 72151390 64196747 64196165 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 72149614 72150496 64197941 64197059 NC_060933.1 CM039042.1 99.89 True local misassembly 72148013 72149036 64199353 64198330 NC_060933.1 CM039042.1 99.8 True local misassembly 72145635 72146227 64201336 64200744 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = 11990137 60141300 60155037 64215554 64201797 NC_060933.1 CM039042.1 98.4 True relocation, inconsistency = -12016940 72154410 72155373 64219384 64218421 NC_060933.1 CM039042.1 99.38 True indel: indel (<= 5bp) 72153552 72154165 64220247 64219634 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 72152956 72153541 64220833 64220248 NC_060933.1 CM039042.1 99.49 True local misassembly 72151396 72152209 64222338 64221525 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 72150808 72151390 64222921 64222339 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 72149614 72150802 64224110 64222922 NC_060933.1 CM039042.1 99.92 True indel: indel (> 5bp) 72148791 72149380 64224943 64224354 NC_060933.1 CM039042.1 99.66 True local misassembly 72145635 72146222 64227714 64227127 NC_060933.1 CM039042.1 99.66 True indel: indel (> 5bp) 72144965 72145634 64228433 64227764 NC_060933.1 CM039042.1 99.85 True local misassembly 72143636 72144464 64229812 64228984 NC_060933.1 CM039042.1 99.88 True indel: indel (<= 5bp) 72141832 72143635 64231621 64229818 NC_060933.1 CM039042.1 99.56 True local misassembly 72140652 72141451 64232537 64231738 NC_060933.1 CM039042.1 99.12 True local misassembly 72139593 72140195 64233656 64233054 NC_060933.1 CM039042.1 100.0 True local misassembly 72137001 72138055 64236264 64235210 NC_060933.1 CM039042.1 99.43 True indel: indel (> 5bp) 72136339 72137000 64236936 64236275 NC_060933.1 CM039042.1 99.71 True relocation, inconsistency = 354667 72491668 72493389 64236937 64238658 NC_060933.1 CM039042.1 97.01 True relocation, inconsistency = -7080859 65412547 65440767 64238675 64266934 NC_060933.1 CM039042.1 97.71 True relocation, inconsistency = 5328160 60082533 60084386 64268803 64266935 NC_060933.1 CM039042.1 99.09 True local misassembly 60070416 60084434 64282313 64268804 NC_060933.1 CM039042.1 95.37 True relocation, inconsistency = 10946306 71030783 71050899 64282356 64302372 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = -10649569 60401331 60412608 64302373 64313515 NC_060933.1 CM039042.1 96.85 True relocation, inconsistency = 10655000 71067609 71094975 64313516 64340922 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = -10650859 60444151 60449417 64340957 64345973 NC_060933.1 CM039042.1 97.14 True relocation, inconsistency = 425886 59998079 60018264 64366064 64345974 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = -14650603 74632896 74636434 64381841 64378312 NC_060933.1 CM039042.1 96.56 True relocation, inconsistency = 23561138 51068639 51069261 64384955 64384338 NC_060933.1 CM039042.1 96.95 True relocation, inconsistency = 10073459 61143347 61144358 64385582 64386593 NC_060933.1 CM039042.1 99.21 True indel: indel (> 5bp) 61144688 61145677 64386948 64387937 NC_060933.1 CM039042.1 98.69 True local misassembly 61153468 61154378 64402592 64403527 NC_060933.1 CM039042.1 95.62 True relocation, inconsistency = -8741490 52413876 52416901 64404515 64407540 NC_060933.1 CM039042.1 96.67 True relocation, inconsistency = 14814993 67236384 67236921 64412030 64412562 NC_060933.1 CM039042.1 97.21 True relocation, inconsistency = -8688970 58548050 58549037 64412661 64413628 NC_060933.1 CM039042.1 96.46 True relocation, inconsistency = -6101665 52448675 52449296 64414931 64415552 NC_060933.1 CM039042.1 99.52 True indel: indel (> 5bp) 52449297 52450033 64415563 64416299 NC_060933.1 CM039042.1 98.78 True local misassembly 52451233 52451955 64418298 64419020 NC_060933.1 CM039042.1 98.89 True indel: indel (> 5bp) 52451976 52452619 64419021 64419664 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = 6092561 58547940 58549041 64422424 64423485 NC_060933.1 CM039042.1 95.1 True relocation, inconsistency = 2642782 61193133 61195031 64424795 64426688 NC_060933.1 CM039042.1 98.06 True local misassembly 61195696 61196324 64428113 64428741 NC_060933.1 CM039042.1 98.89 True indel: indel (> 5bp) 61196434 61197422 64428836 64429824 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = 3411331 57780353 57783664 64434580 64431263 NC_060933.1 CM039042.1 97.05 True relocation, inconsistency = -10599117 68377552 68378055 64436499 64435995 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = 6097262 62277896 62278604 64438888 64438185 NC_060933.1 CM039042.1 97.74 True relocation, inconsistency = 6898390 69177008 69178109 64438902 64439963 NC_060933.1 CM039042.1 95.01 True relocation, inconsistency = -7986286 61193133 61193719 64441273 64441859 NC_060933.1 CM039042.1 99.49 True indel: indel (<= 5bp) 61193720 61194230 64441865 64442375 NC_060933.1 CM039042.1 99.02 True local misassembly 61195691 61196324 64444591 64445224 NC_060933.1 CM039042.1 98.74 True indel: indel (> 5bp) 61196434 61197068 64445319 64445953 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = 7180089 68379413 68382272 64451058 64448209 NC_060933.1 CM039042.1 97.67 True local misassembly 68377552 68378055 64452982 64452478 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = 15915313 52459500 52460179 64455042 64455721 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = 11756813 64221365 64222025 64460754 64460094 NC_060933.1 CM039042.1 98.49 True relocation, inconsistency = -16824 64234826 64235329 64464117 64463614 NC_060933.1 CM039042.1 98.02 True local misassembly 64233505 64234037 64465493 64464961 NC_060933.1 CM039042.1 97.56 True relocation, inconsistency = 3019693 61203678 61204649 64474656 64475632 NC_060933.1 CM039042.1 95.64 True relocation, inconsistency = 1614135 59585032 59586019 64480143 64479156 NC_060933.1 CM039042.1 98.18 True relocation, inconsistency = -4659396 64232066 64232698 64492505 64491873 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = 2643988 61585563 61586680 64493903 64494980 NC_060933.1 CM039042.1 95.08 True relocation, inconsistency = 8628837 70218834 70221587 64501045 64498297 NC_060933.1 CM039042.1 95.18 True relocation, inconsistency = 11674820 58539714 58541626 64503433 64505335 NC_060933.1 CM039042.1 96.21 True local misassembly 58545548 58546186 64506720 64507348 NC_060933.1 CM039042.1 96.56 True relocation, inconsistency = 5659521 64206368 64206963 64508604 64508009 NC_060933.1 CM039042.1 98.32 True local misassembly 64204415 64205066 64510707 64510056 NC_060933.1 CM039042.1 98.47 True indel: indel (<= 5bp) 64203666 64204414 64511461 64510713 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = -37740 64237759 64238430 64515108 64514437 NC_060933.1 CM039042.1 99.11 True local misassembly 64235971 64236544 64516881 64516308 NC_060933.1 CM039042.1 99.3 True local misassembly 64234818 64235329 64518034 64517523 NC_060933.1 CM039042.1 99.02 True local misassembly 64233503 64234032 64519594 64519065 NC_060933.1 CM039042.1 98.11 True local misassembly 64231316 64232716 64522576 64521181 NC_060933.1 CM039042.1 96.19 True relocation, inconsistency = 3301848 60928348 60929125 64522919 64523686 NC_060933.1 CM039042.1 98.07 True fake: not a misassembly (possible transposable element) 52233594 52236380 64523772 64526523 NC_060933.1 CM039042.1 96.93 True fake: not a misassembly (possible transposable element) 60928605 60929194 64526524 64527108 NC_060933.1 CM039042.1 98.68 True relocation, inconsistency = 3178473 64108298 64109412 64528849 64527739 NC_060933.1 CM039042.1 95.56 True relocation, inconsistency = 4931783 59173611 59174300 64531064 64531758 NC_060933.1 CM039042.1 96.57 True relocation, inconsistency = -4809627 54366710 54368624 64533795 64535749 NC_060933.1 CM039042.1 95.67 True relocation, inconsistency = 10103633 64473082 64476060 64536574 64539547 NC_060933.1 CM039042.1 95.96 True relocation, inconsistency = -13286600 51193286 51193840 64543373 64543927 NC_060933.1 CM039042.1 98.92 True local misassembly 51195053 51195556 64545285 64545788 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = 9752448 60951875 60953105 64549659 64550880 NC_060933.1 CM039042.1 96.4 True relocation, inconsistency = -6565822 54387284 54391044 64550881 64554572 NC_060933.1 CM039042.1 95.16 True relocation, inconsistency = -2131647 52260262 52262611 64555437 64557806 NC_060933.1 CM039042.1 97.73 True local misassembly 52263294 52265102 64561500 64563269 NC_060933.1 CM039042.1 95.07 True relocation, inconsistency = 10988706 63254015 63254790 64563476 64564251 NC_060933.1 CM039042.1 98.45 True local misassembly 63257485 63258005 64567141 64567661 NC_060933.1 CM039042.1 98.85 True indel: indel (<= 5bp) 63258150 63258815 64567801 64568466 NC_060933.1 CM039042.1 98.65 True indel: indel (> 5bp) 63258965 63259628 64568626 64569289 NC_060933.1 CM039042.1 99.4 True indel: indel (> 5bp) 63259639 63260743 64569290 64570394 NC_060933.1 CM039042.1 98.82 True local misassembly 63262820 63263654 64572455 64573289 NC_060933.1 CM039042.1 99.28 True relocation, inconsistency = 5089340 68355054 68355775 64576070 64575349 NC_060933.1 CM039042.1 98.48 True local misassembly 68350677 68351488 64579937 64579126 NC_060933.1 CM039042.1 98.65 True local misassembly 68349306 68350067 64581093 64580332 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 10624278 57719584 57722078 64586587 64584043 NC_060933.1 CM039042.1 95.66 True relocation, inconsistency = -18657193 76374513 76376664 64588806 64586700 NC_060933.1 CM039042.1 95.26 True relocation, inconsistency = 19288422 57083342 57086090 64588807 64591566 NC_060933.1 CM039042.1 95.42 True relocation, inconsistency = 27629 57118307 57118841 64596154 64596688 NC_060933.1 CM039042.1 98.32 True relocation, inconsistency = 5596941 62718697 62724775 64599603 64605646 NC_060933.1 CM039042.1 95.89 True relocation, inconsistency = 11528772 74253548 74255187 64605647 64607281 NC_060933.1 CM039042.1 95.27 True fake: not a misassembly (possible transposable element) 75260172 75260706 64608180 64607646 NC_060933.1 CM039042.1 98.69 True fake: not a misassembly (possible transposable element) 74263785 74264603 64616448 64617266 NC_060933.1 CM039042.1 98.66 True relocation, inconsistency = -9336932 64933155 64934430 64622750 64624045 NC_060933.1 CM039042.1 95.64 True relocation, inconsistency = 4678095 69613457 69613960 64624977 64625480 NC_060933.1 CM039042.1 98.61 True local misassembly 69616116 69616949 64627291 64628124 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 6735752 76354290 76354908 64630331 64629713 NC_060933.1 CM039042.1 99.19 True relocation, inconsistency = 4597847 71752906 71754420 64632354 64633923 NC_060933.1 CM039042.1 95.35 True relocation, inconsistency = -17777384 53979848 53980396 64636735 64637283 NC_060933.1 CM039042.1 99.45 True local misassembly 53981745 53982285 64638397 64638937 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 14246754 68231968 68233571 64643474 64641866 NC_060933.1 CM039042.1 96.01 True relocation, inconsistency = -4223558 72453665 72454346 64645335 64644654 NC_060933.1 CM039042.1 98.83 True local misassembly 72452015 72452529 64646990 64646476 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = 7466486 64981999 64982951 64649568 64650520 NC_060933.1 CM039042.1 96.99 True relocation, inconsistency = 3261803 68244863 68246603 64652374 64650629 NC_060933.1 CM039042.1 97.16 True relocation, inconsistency = 5948464 74199735 74200243 64657042 64657550 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = -4685856 69514944 69515829 64658107 64658992 NC_060933.1 CM039042.1 98.65 True local misassembly 69518672 69519313 64662379 64663020 NC_060933.1 CM039042.1 98.29 True relocation, inconsistency = -6731686 62788887 62790492 64664280 64665855 NC_060933.1 CM039042.1 95.25 True indel: indel (> 5bp) 62790669 62794660 64666022 64670073 NC_060933.1 CM039042.1 95.75 True relocation, inconsistency = 5281459 57507138 57507721 64672145 64671562 NC_060933.1 CM039042.1 98.97 True local misassembly 57505055 57505710 64674183 64673528 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 57504202 57504731 64675031 64674502 NC_060933.1 CM039042.1 99.25 True local misassembly 57503159 57503721 64675959 64675397 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = -58009 57559720 57560681 64677397 64676446 NC_060933.1 CM039042.1 96.3 True relocation, inconsistency = -18498342 76054777 76058061 64680677 64677398 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 15918958 60135171 60135818 64681325 64680678 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = -15518315 75649589 75653485 64685112 64681326 NC_060933.1 CM039042.1 96.28 True relocation, inconsistency = -401985 76046657 76050240 64690024 64686446 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = 18878586 57165451 57167379 64692664 64690716 NC_060933.1 CM039042.1 96.34 True relocation, inconsistency = 4836652 52325550 52328699 64692750 64695919 NC_060933.1 CM039042.1 98.22 True relocation, inconsistency = 21194216 73522916 73533862 64706706 64695920 NC_060933.1 CM039042.1 95.1 True local misassembly 73518061 73518704 64707345 64706707 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 18540968 54975708 54976729 64708724 64707709 NC_060933.1 CM039042.1 95.62 True relocation, inconsistency = -18532595 73507185 73507916 64709842 64709111 NC_060933.1 CM039042.1 98.36 True local misassembly 73505659 73506409 64711168 64710418 NC_060933.1 CM039042.1 99.61 True local misassembly 73509388 73512120 64713966 64711169 NC_060933.1 CM039042.1 95.28 True relocation, inconsistency = 9843093 63664097 63665133 64715128 64716169 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = 9792581 73463324 73464210 64722670 64721779 NC_060933.1 CM039042.1 97.87 True relocation, inconsistency = -32975 73486594 73495016 64732352 64723953 NC_060933.1 CM039042.1 95.79 True relocation, inconsistency = -7124 73486594 73493581 64739496 64732489 NC_060933.1 CM039042.1 95.93 True local misassembly 73478714 73480669 64743252 64741307 NC_060933.1 CM039042.1 97.96 True relocation, inconsistency = 2812838 76295051 76295937 64744796 64745692 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = 20606181 55684466 55687237 64750086 64747325 NC_060933.1 CM039042.1 96.53 True relocation, inconsistency = -10570989 66254776 66255391 64750765 64750150 NC_060933.1 CM039042.1 98.86 True local misassembly 66253037 66254083 64752339 64751293 NC_060933.1 CM039042.1 99.14 True relocation, inconsistency = -31751 66281347 66281906 64755790 64755221 NC_060933.1 CM039042.1 97.19 True relocation, inconsistency = -7170334 73447749 73451051 64759706 64756420 NC_060933.1 CM039042.1 97.51 True fake: not a misassembly (possible transposable element) 49476133 49476883 64759866 64760636 NC_060933.1 CM039042.1 95.85 True fake: not a misassembly (possible transposable element) 73447036 73447741 64765641 64764936 NC_060933.1 CM039042.1 99.72 True fake: not a misassembly (possible transposable element) 66262782 66263449 64766658 64765976 NC_060933.1 CM039042.1 95.78 True fake: not a misassembly (possible transposable element) 73437653 73438639 64768282 64767296 NC_060933.1 CM039042.1 99.7 True local misassembly 73436155 73437044 64769700 64768811 NC_060933.1 CM039042.1 99.78 True local misassembly 73434617 73435461 64771698 64770854 NC_060933.1 CM039042.1 99.41 True indel: indel (> 5bp) 73433506 73434338 64772824 64771992 NC_060933.1 CM039042.1 99.52 True local misassembly 73431571 73432096 64774759 64774234 NC_060933.1 CM039042.1 99.24 True indel: indel (<= 5bp) 73430574 73431565 64775751 64774760 NC_060933.1 CM039042.1 99.6 True local misassembly 73429091 73429678 64777244 64776657 NC_060933.1 CM039042.1 99.32 True local misassembly 73427397 73428226 64778943 64778114 NC_060933.1 CM039042.1 99.64 True indel: indel (> 5bp) 73426765 73427335 64779565 64778995 NC_060933.1 CM039042.1 99.65 True indel: indel (<= 5bp) 73425926 73426764 64780409 64779571 NC_060933.1 CM039042.1 99.88 True local misassembly 73430638 73431280 64782551 64781909 NC_060933.1 CM039042.1 98.13 True local misassembly 73424678 73425561 64786357 64785464 NC_060933.1 CM039042.1 98.55 True relocation, inconsistency = -7859 73424700 73425561 64794224 64793333 NC_060933.1 CM039042.1 95.4 True relocation, inconsistency = -129103 73551366 73552392 64796671 64795635 NC_060933.1 CM039042.1 95.11 True relocation, inconsistency = -50921 73597850 73598717 64801113 64800241 NC_060933.1 CM039042.1 96.68 True relocation, inconsistency = 171654 73422928 73424654 64804356 64802655 NC_060933.1 CM039042.1 98.15 True local misassembly 73424628 73425561 64808572 64807634 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = -201628 73614597 73615203 64820231 64819625 NC_060933.1 CM039042.1 97.69 True relocation, inconsistency = 188120 73422928 73424654 64823755 64822054 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = 22406977 51007596 51008487 64832100 64831219 NC_060933.1 CM039042.1 96.19 True relocation, inconsistency = -22390066 73393076 73393673 64836686 64836089 NC_060933.1 CM039042.1 98.49 True local misassembly 73392476 73393075 64837401 64836802 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = 77043 73313638 73315432 64839202 64837402 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = 16141 73296590 73297212 64840124 64839487 NC_060933.1 CM039042.1 96.98 True relocation, inconsistency = -68013 73363091 73364602 64841631 64840125 NC_060933.1 CM039042.1 98.28 True local misassembly 73360383 73361328 64844476 64843544 NC_060933.1 CM039042.1 96.22 True relocation, inconsistency = -11313 73368794 73370496 64847418 64845676 NC_060933.1 CM039042.1 95.34 True relocation, inconsistency = -26693 73393081 73393812 64849824 64849093 NC_060933.1 CM039042.1 98.5 True relocation, inconsistency = 34987 73350811 73352295 64857141 64855623 NC_060933.1 CM039042.1 96.38 True local misassembly 73349196 73350504 64863349 64861986 NC_060933.1 CM039042.1 95.09 True relocation, inconsistency = 47122 73300170 73300716 64865253 64864707 NC_060933.1 CM039042.1 98.72 True local misassembly 73299260 73299848 64866063 64865475 NC_060933.1 CM039042.1 97.96 True relocation, inconsistency = -49388 73344206 73348230 64870500 64866481 NC_060933.1 CM039042.1 95.62 True local misassembly 73344206 73346344 64873955 64871837 NC_060933.1 CM039042.1 96.7 True relocation, inconsistency = -47885 73386545 73389606 64879491 64876440 NC_060933.1 CM039042.1 98.6 True relocation, inconsistency = 38764 73344206 73346344 64883051 64880928 NC_060933.1 CM039042.1 96.48 True relocation, inconsistency = -47885 73385385 73389606 64889742 64885536 NC_060933.1 CM039042.1 97.84 True relocation, inconsistency = -7284 73385385 73389606 64897006 64892805 NC_060933.1 CM039042.1 97.77 True relocation, inconsistency = -7279 73384289 73389606 64905356 64900064 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = 16478 73366952 73367733 64906220 64905434 NC_060933.1 CM039042.1 97.35 True relocation, inconsistency = 17660316 55703796 55705983 64909038 64906873 NC_060933.1 CM039042.1 96.28 True relocation, inconsistency = -17643100 73345558 73346240 64910376 64909694 NC_060933.1 CM039042.1 99.41 True local misassembly 73342913 73344263 64913011 64911661 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 73342344 73342907 64913575 64913012 NC_060933.1 CM039042.1 100.0 True local misassembly 73340597 73341243 64915337 64914691 NC_060933.1 CM039042.1 99.38 True indel: indel (<= 5bp) 73340051 73340596 64915888 64915343 NC_060933.1 CM039042.1 98.72 True local misassembly 73336471 73336981 64919408 64918898 NC_060933.1 CM039042.1 99.02 True local misassembly 73335145 73336470 64920909 64919584 NC_060933.1 CM039042.1 99.7 True local misassembly 73333013 73333945 64923041 64922109 NC_060933.1 CM039042.1 99.46 True relocation, inconsistency = 11473 73319312 73321348 64925254 64923233 NC_060933.1 CM039042.1 98.38 True local misassembly 73317111 73317698 64927919 64927332 NC_060933.1 CM039042.1 99.32 True indel: indel (> 5bp) 73316308 73317095 64928707 64927920 NC_060933.1 CM039042.1 99.62 True local misassembly 73305508 73311609 64934906 64928815 NC_060933.1 CM039042.1 97.69 True local misassembly 73298281 73303158 64939952 64935045 NC_060933.1 CM039042.1 97.45 True relocation, inconsistency = 7002994 66292845 66294793 64942339 64940446 NC_060933.1 CM039042.1 96.51 True local misassembly 66284616 66290343 64949036 64943329 NC_060933.1 CM039042.1 98.57 True relocation, inconsistency = -7171391 73455092 73455666 64949961 64949377 NC_060933.1 CM039042.1 97.09 True relocation, inconsistency = -13230 73467158 73467702 64951130 64950581 NC_060933.1 CM039042.1 98.0 True relocation, inconsistency = 7206086 66253037 66255684 64959184 64956518 NC_060933.1 CM039042.1 96.09 True relocation, inconsistency = -29918 66276573 66281375 64965534 64960764 NC_060933.1 CM039042.1 95.16 True relocation, inconsistency = 10585730 55687831 55688356 64968546 64968021 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = -17762205 73447744 73448987 64970858 64969595 NC_060933.1 CM039042.1 96.91 True relocation, inconsistency = 14941553 58504466 58505002 64972047 64972582 NC_060933.1 CM039042.1 97.77 True relocation, inconsistency = 4717782 53781050 53781738 64978216 64977528 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = -22429925 76189616 76206892 64999315 64982299 NC_060933.1 CM039042.1 96.71 True local misassembly 76188500 76190515 65001420 64999410 NC_060933.1 CM039042.1 98.13 True local misassembly 76176816 76178574 65006636 65004878 NC_060933.1 CM039042.1 99.6 True indel: indel (<= 5bp) 76175898 76176810 65007549 65006637 NC_060933.1 CM039042.1 99.6 True fake: not a misassembly (possible transposable element) 61791797 61794237 65007550 65009985 NC_060933.1 CM039042.1 95.05 True fake: not a misassembly (possible transposable element) 76169224 76169911 65010673 65009986 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = 64235 76101009 76104988 65014673 65010674 NC_060933.1 CM039042.1 96.12 True relocation, inconsistency = -10115 76107148 76108290 65018649 65017507 NC_060933.1 CM039042.1 99.39 True local misassembly 76103886 76106194 65021961 65019653 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 76102776 76103885 65023076 65021967 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 76102189 76102770 65023658 65023077 NC_060933.1 CM039042.1 99.48 True relocation, inconsistency = 12200 76086504 76089802 65027163 65023845 NC_060933.1 CM039042.1 98.89 True local misassembly 76077685 76085763 65035734 65027446 NC_060933.1 CM039042.1 96.47 True relocation, inconsistency = -30780 76106198 76108464 65038006 65035735 NC_060933.1 CM039042.1 98.78 True local misassembly 76101972 76110419 65046795 65038333 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = 12195 76086504 76089776 65050088 65046796 NC_060933.1 CM039042.1 98.89 True local misassembly 76077109 76085763 65059245 65050371 NC_060933.1 CM039042.1 96.8 True relocation, inconsistency = 8275379 67797834 67801595 65063096 65059380 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = -8249568 76046657 76047401 65063836 65063097 NC_060933.1 CM039042.1 98.66 True relocation, inconsistency = 8258535 67782642 67788082 65069211 65063876 NC_060933.1 CM039042.1 95.31 True relocation, inconsistency = -7845405 75625766 75627491 65071477 65069767 NC_060933.1 CM039042.1 96.95 True relocation, inconsistency = -49501 75673144 75675102 65073595 65071642 NC_060933.1 CM039042.1 97.22 True local misassembly 75671820 75672392 65074870 65074298 NC_060933.1 CM039042.1 99.13 True indel: indel (> 5bp) 75669869 75671405 65076796 65075260 NC_060933.1 CM039042.1 99.15 True local misassembly 75668669 75669305 65077736 65077100 NC_060933.1 CM039042.1 99.84 True local misassembly 75666221 75666777 65080158 65079602 NC_060933.1 CM039042.1 99.64 True local misassembly 75663712 75664392 65082671 65081991 NC_060933.1 CM039042.1 99.12 True local misassembly 75662395 75663065 65084018 65083348 NC_060933.1 CM039042.1 98.51 True local misassembly 75660300 75660931 65085888 65085257 NC_060933.1 CM039042.1 99.21 True relocation, inconsistency = -374587 76034283 76034886 65086492 65085889 NC_060933.1 CM039042.1 99.34 True local misassembly 76033267 76033790 65087528 65087005 NC_060933.1 CM039042.1 100.0 True local misassembly 76032053 76032594 65088268 65087727 NC_060933.1 CM039042.1 99.82 True indel: stretch of mismatches 76030368 76031886 65089953 65088435 NC_060933.1 CM039042.1 99.8 True local misassembly 76028751 76029441 65091540 65090850 NC_060933.1 CM039042.1 99.57 True indel: indel (<= 5bp) 76027753 76028345 65092533 65091941 NC_060933.1 CM039042.1 99.83 True relocation, inconsistency = 12433 76014426 76014974 65093427 65092879 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 76013860 76014377 65093999 65093482 NC_060933.1 CM039042.1 99.81 True relocation, inconsistency = 22636646 53367397 53377092 65103878 65094121 NC_060933.1 CM039042.1 95.12 True relocation, inconsistency = -22638585 75993084 76005981 65117037 65103879 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = 8250561 67732238 67738669 65127377 65120891 NC_060933.1 CM039042.1 96.09 True relocation, inconsistency = 14387908 53343766 53344329 65127951 65127378 NC_060933.1 CM039042.1 96.38 True relocation, inconsistency = -14394927 67730739 67738669 65135906 65127975 NC_060933.1 CM039042.1 95.66 True relocation, inconsistency = 6330615 74069668 74070240 65136290 65136862 NC_060933.1 CM039042.1 99.65 True relocation, inconsistency = -11960510 62111807 62112324 65138939 65139456 NC_060933.1 CM039042.1 99.61 True local misassembly 62113269 62113797 65140341 65140869 NC_060933.1 CM039042.1 99.43 True local misassembly 62114667 62115339 65141784 65142456 NC_060933.1 CM039042.1 99.26 True local misassembly 62116304 62117193 65143417 65144306 NC_060933.1 CM039042.1 99.66 True local misassembly 62117897 62118540 65144960 65145603 NC_060933.1 CM039042.1 98.76 True relocation, inconsistency = -569841 61553824 61555614 65150728 65152539 NC_060933.1 CM039042.1 96.06 True relocation, inconsistency = 10606606 72164535 72165456 65155775 65154854 NC_060933.1 CM039042.1 99.35 True relocation, inconsistency = 12048373 60115050 60115601 65156887 65156336 NC_060933.1 CM039042.1 99.64 True local misassembly 60113679 60114283 65158218 65157614 NC_060933.1 CM039042.1 99.17 True fake: not a misassembly (possible transposable element) 70752757 70753551 65160530 65159736 NC_060933.1 CM039042.1 99.56 True fake: not a misassembly (possible transposable element) 60109573 60116270 65167218 65160531 NC_060933.1 CM039042.1 95.31 True relocation, inconsistency = -12028503 72136651 72138075 65168658 65167219 NC_060933.1 CM039042.1 97.05 True relocation, inconsistency = 18737217 53394362 53397742 65170350 65173696 NC_060933.1 CM039042.1 95.03 True relocation, inconsistency = 8729306 62127049 62129275 65173697 65175938 NC_060933.1 CM039042.1 95.61 True relocation, inconsistency = 13203439 75334104 75334690 65177914 65177328 NC_060933.1 CM039042.1 98.64 True relocation, inconsistency = 3234477 72092669 72096090 65184883 65181451 NC_060933.1 CM039042.1 96.27 True relocation, inconsistency = 15055042 57033447 57034634 65189063 65187876 NC_060933.1 CM039042.1 99.41 True local misassembly 57032220 57032756 65189927 65189391 NC_060933.1 CM039042.1 99.26 True indel: indel (<= 5bp) 57031514 57032214 65190628 65189928 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = -15038240 72065669 72069642 65194658 65190740 NC_060933.1 CM039042.1 95.22 True relocation, inconsistency = 3698003 75768648 75769787 65195661 65196800 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 3157789 72606077 72610499 65201557 65197160 NC_060933.1 CM039042.1 95.5 True relocation, inconsistency = -2911234 75516110 75517301 65202763 65201567 NC_060933.1 CM039042.1 97.02 True relocation, inconsistency = 2820506 72694595 72695278 65203089 65203772 NC_060933.1 CM039042.1 98.83 True indel: indel (<= 5bp) 72695279 72695973 65203778 65204472 NC_060933.1 CM039042.1 99.57 True local misassembly 72697764 72698450 65206363 65207049 NC_060933.1 CM039042.1 99.13 True local misassembly 72700612 72701261 65209335 65209984 NC_060933.1 CM039042.1 98.92 True local misassembly 72702290 72703534 65211038 65212282 NC_060933.1 CM039042.1 99.2 True indel: indel (> 5bp) 72703535 72704414 65212338 65213217 NC_060933.1 CM039042.1 99.66 True relocation, inconsistency = -19250298 53456902 53457440 65216003 65216541 NC_060933.1 CM039042.1 99.63 True local misassembly 53458536 53459100 65217636 65218200 NC_060933.1 CM039042.1 99.82 True local misassembly 53461883 53462696 65221128 65221941 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = 19475480 72942129 72942706 65225894 65226471 NC_060933.1 CM039042.1 98.62 True indel: indel (> 5bp) 72942930 72943974 65226710 65227754 NC_060933.1 CM039042.1 98.85 True local misassembly 72944765 72945360 65228205 65228800 NC_060933.1 CM039042.1 99.33 True local misassembly 72947180 72947788 65230610 65231218 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -8057 72940867 72944433 65232354 65235900 NC_060933.1 CM039042.1 97.96 True local misassembly 72942129 72942706 65237295 65237872 NC_060933.1 CM039042.1 98.62 True indel: indel (> 5bp) 72942930 72943974 65238106 65239150 NC_060933.1 CM039042.1 98.85 True local misassembly 72944765 72945360 65239601 65240196 NC_060933.1 CM039042.1 99.16 True relocation, inconsistency = -11733988 61213038 61213733 65241862 65242557 NC_060933.1 CM039042.1 98.42 True local misassembly 61215069 61215608 65243813 65244352 NC_060933.1 CM039042.1 98.15 True local misassembly 61218724 61220202 65247577 65249055 NC_060933.1 CM039042.1 98.58 True local misassembly 61221592 61222190 65250480 65251078 NC_060933.1 CM039042.1 98.5 True relocation, inconsistency = 10268710 71493495 71496541 65256759 65253673 NC_060933.1 CM039042.1 96.75 True relocation, inconsistency = 1349790 72846422 72851093 65256850 65261496 NC_060933.1 CM039042.1 95.18 True relocation, inconsistency = 12589215 60254560 60257179 65264168 65261524 NC_060933.1 CM039042.1 97.18 True relocation, inconsistency = -1693997 61942965 61943753 65269760 65268972 NC_060933.1 CM039042.1 98.73 True local misassembly 61943075 61943753 65271302 65270624 NC_060933.1 CM039042.1 98.82 True local misassembly 61941080 61941668 65273282 65272694 NC_060933.1 CM039042.1 99.66 True indel: indel (<= 5bp) 61940185 61940787 65274172 65273570 NC_060933.1 CM039042.1 98.84 True indel: indel (> 5bp) 61939610 61940184 65274757 65274183 NC_060933.1 CM039042.1 98.43 True relocation, inconsistency = 1684857 60253785 60254442 65275725 65275068 NC_060933.1 CM039042.1 99.39 True indel: indel (<= 5bp) 60253043 60253779 65276462 65275726 NC_060933.1 CM039042.1 99.05 True local misassembly 60249105 60250416 65280295 65278984 NC_060933.1 CM039042.1 99.01 True local misassembly 60245377 60246424 65284233 65283186 NC_060933.1 CM039042.1 98.95 True indel: indel (<= 5bp) 60244453 60245376 65285162 65284239 NC_060933.1 CM039042.1 99.24 True local misassembly 60240769 60241297 65288541 65288013 NC_060933.1 CM039042.1 98.68 True indel: indel (> 5bp) 60240265 60240768 65289055 65288552 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = -10426798 70664734 70666379 65291364 65289739 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = 10435490 60223125 60223656 65297483 65296952 NC_060933.1 CM039042.1 99.44 True local misassembly 60221676 60222419 65298922 65298179 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 1538402 58675076 58676674 65305522 65307160 NC_060933.1 CM039042.1 95.39 True relocation, inconsistency = 5834470 64515640 64517196 65313222 65311656 NC_060933.1 CM039042.1 96.32 True relocation, inconsistency = 7136577 57378454 57379048 65313841 65313237 NC_060933.1 CM039042.1 96.2 True relocation, inconsistency = 5054199 62433951 62434560 65314545 65315154 NC_060933.1 CM039042.1 99.34 True local misassembly 62435207 62435774 65315731 65316298 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 2410556 64847439 64848527 65318485 65317407 NC_060933.1 CM039042.1 96.53 True relocation, inconsistency = -10988600 75833851 75835324 65320673 65319200 NC_060933.1 CM039042.1 95.91 True local misassembly 75832667 75836987 65325079 65320674 NC_060933.1 CM039042.1 95.89 True local misassembly 75832967 75835808 65328001 65325080 NC_060933.1 CM039042.1 95.67 True relocation, inconsistency = 10456494 65374057 65375336 65330402 65329138 NC_060933.1 CM039042.1 95.12 True relocation, inconsistency = -10471778 75838850 75843376 65337452 65332861 NC_060933.1 CM039042.1 97.89 True local misassembly 75833899 75835853 65339477 65337453 NC_060933.1 CM039042.1 95.8 True local misassembly 75832610 75838932 65345800 65339478 NC_060933.1 CM039042.1 97.93 True local misassembly 75827147 75827830 65348712 65348029 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 75826019 75827141 65349835 65348713 NC_060933.1 CM039042.1 99.82 True indel: stretch of mismatches 75825048 75825844 65350806 65350010 NC_060933.1 CM039042.1 99.62 True local misassembly 75822434 75823436 65353411 65352409 NC_060933.1 CM039042.1 99.6 True indel: indel (<= 5bp) 75821352 75822433 65354498 65353417 NC_060933.1 CM039042.1 99.91 True indel: indel (> 5bp) 75820790 75821341 65355050 65354499 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 75819282 75820553 65356568 65355297 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 75818179 75819065 65357681 65356795 NC_060933.1 CM039042.1 99.66 True local misassembly 75817251 75817796 65358227 65357682 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 75814624 75816782 65360869 65358711 NC_060933.1 CM039042.1 99.86 True local misassembly 75812148 75812831 65364304 65363621 NC_060933.1 CM039042.1 99.86 True local misassembly 75807214 75809295 65366386 65364305 NC_060933.1 CM039042.1 99.52 True indel: indel (> 5bp) 75806191 75807153 65367349 65366387 NC_060933.1 CM039042.1 99.58 True indel: indel (> 5bp) 75804864 75806091 65368666 65367439 NC_060933.1 CM039042.1 99.84 True indel: indel (<= 5bp) 75802379 75804863 65371156 65368672 NC_060933.1 CM039042.1 99.76 True indel: indel (<= 5bp) 75801730 75802373 65371800 65371157 NC_060933.1 CM039042.1 99.69 True indel: indel (<= 5bp) 75801175 75801729 65372360 65371806 NC_060933.1 CM039042.1 99.82 True local misassembly 75798494 75799926 65375006 65373574 NC_060933.1 CM039042.1 99.65 True indel: indel (<= 5bp) 75796971 75798059 65376524 65375436 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 75796230 75796970 65377270 65376530 NC_060933.1 CM039042.1 99.87 True indel: indel (> 5bp) 75795430 75795940 65378080 65377570 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 75794432 75795052 65379093 65378473 NC_060933.1 CM039042.1 100.0 True local misassembly 75793753 75794431 65382014 65381336 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 75792944 75793444 65382793 65382293 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 75791929 75792697 65383793 65383025 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 75791109 75791814 65384613 65383908 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 75790376 75791103 65385341 65384614 NC_060933.1 CM039042.1 99.73 True indel: indel (> 5bp) 75789092 75789810 65386550 65385832 NC_060933.1 CM039042.1 99.72 True local misassembly 75788061 75788816 65387306 65386551 NC_060933.1 CM039042.1 99.21 True indel: indel (> 5bp) 75786628 75788054 65388733 65387307 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 75785723 75786513 65389648 65388858 NC_060933.1 CM039042.1 99.83 True relocation, inconsistency = 7299 75771737 75778423 65396126 65389649 NC_060933.1 CM039042.1 96.14 True local misassembly 75770409 75771581 65400319 65399147 NC_060933.1 CM039042.1 98.06 True fake: not a misassembly (possible transposable element) 76407838 76408531 65401013 65400320 NC_060933.1 CM039042.1 97.92 True fake: not a misassembly (possible transposable element) 75766435 75770462 65405377 65401350 NC_060933.1 CM039042.1 99.55 True local misassembly 75764183 75766439 65408262 65406016 NC_060933.1 CM039042.1 99.16 True relocation, inconsistency = 20069 75743155 75744113 65409221 65408263 NC_060933.1 CM039042.1 100.0 True fake: not a misassembly (possible transposable element) 75733918 75735191 65411356 65410053 NC_060933.1 CM039042.1 96.93 True fake: not a misassembly (possible transposable element) 75730212 75740776 65422263 65411724 NC_060933.1 CM039042.1 99.1 True relocation, inconsistency = 32127 75687861 75696316 65432731 65424032 NC_060933.1 CM039042.1 96.25 True local misassembly 75687861 75689792 65434668 65432732 NC_060933.1 CM039042.1 98.71 True local misassembly 75688538 75689735 65435913 65434716 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 75687729 75688419 65436737 65436047 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 75686594 75687723 65437867 65436738 NC_060933.1 CM039042.1 99.56 True local misassembly 75685479 75686593 65439092 65437978 NC_060933.1 CM039042.1 99.82 True indel: indel (<= 5bp) 75684662 75685473 65439904 65439093 NC_060933.1 CM039042.1 100.0 True local misassembly 75682767 75683406 65447293 65446654 NC_060933.1 CM039042.1 99.53 True indel: indel (<= 5bp) 75681660 75682585 65448395 65447470 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 75680447 75681659 65449613 65448401 NC_060933.1 CM039042.1 99.67 True local misassembly 75679070 75679762 65451020 65450328 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 75678472 75679064 65451613 65451021 NC_060933.1 CM039042.1 99.66 True indel: stretch of mismatches 75677171 75678176 65452914 65451909 NC_060933.1 CM039042.1 99.01 True indel: indel (<= 5bp) 75676665 75677165 65453415 65452915 NC_060933.1 CM039042.1 98.4 True relocation, inconsistency = 13132950 62538692 62543714 65458403 65453416 NC_060933.1 CM039042.1 96.82 True relocation, inconsistency = -13105872 75640123 75644413 65462814 65458554 NC_060933.1 CM039042.1 98.42 True relocation, inconsistency = -36144 75657394 75675980 65482171 65463101 NC_060933.1 CM039042.1 95.52 True relocation, inconsistency = 27351 75625766 75630042 65486418 65482172 NC_060933.1 CM039042.1 98.66 True relocation, inconsistency = 8219253 67405699 67406512 65487252 65486419 NC_060933.1 CM039042.1 96.32 True relocation, inconsistency = 15006830 52397752 52398553 65487568 65488339 NC_060933.1 CM039042.1 95.39 True relocation, inconsistency = 23273965 75672673 75673706 65489527 65488494 NC_060933.1 CM039042.1 99.61 True indel: stretch of mismatches 75671820 75672567 65490380 65489633 NC_060933.1 CM039042.1 99.2 True indel: indel (> 5bp) 75670780 75671804 65491405 65490381 NC_060933.1 CM039042.1 99.51 True indel: indel (<= 5bp) 75670202 75670774 65491978 65491406 NC_060933.1 CM039042.1 99.83 True indel: stretch of mismatches 75668554 75669882 65493626 65492298 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 75667683 75668299 65494507 65493891 NC_060933.1 CM039042.1 99.51 True local misassembly 75666821 75667682 65495702 65494841 NC_060933.1 CM039042.1 99.65 True indel: indel (<= 5bp) 75665251 75666820 65497277 65495708 NC_060933.1 CM039042.1 99.55 True local misassembly 75663863 75664392 65498675 65498146 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 75663333 75663862 65499210 65498681 NC_060933.1 CM039042.1 99.62 True local misassembly 75661403 75662394 65501100 65500109 NC_060933.1 CM039042.1 99.6 True indel: indel (> 5bp) 75660703 75661246 65501810 65501267 NC_060933.1 CM039042.1 100.0 True local misassembly 75658901 75659868 65503862 65502895 NC_060933.1 CM039042.1 100.0 True local misassembly 75657017 75657973 65505746 65504790 NC_060933.1 CM039042.1 99.37 True local misassembly 75655727 75656239 65507395 65506883 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 75653901 75655652 65509231 65507480 NC_060933.1 CM039042.1 99.54 True relocation, inconsistency = 13932324 61719687 61720309 65511121 65510499 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 8356556 53362362 53363012 65511890 65511240 NC_060933.1 CM039042.1 99.08 True relocation, inconsistency = -22637314 75999059 75999670 65512507 65511896 NC_060933.1 CM039042.1 99.51 True indel: indel (> 5bp) 75998323 75999058 65513253 65512518 NC_060933.1 CM039042.1 99.05 True local misassembly 75996888 75997457 65515103 65514534 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = 22637929 53357378 53358128 65516684 65515934 NC_060933.1 CM039042.1 99.33 True indel: indel (> 5bp) 53356515 53357038 65517572 65517049 NC_060933.1 CM039042.1 99.24 True local misassembly 53354628 53355174 65519539 65518993 NC_060933.1 CM039042.1 99.27 True relocation, inconsistency = 18010729 71366631 71368598 65520267 65522244 NC_060933.1 CM039042.1 97.33 True relocation, inconsistency = 3622181 67742058 67743152 65524636 65523542 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = 10610342 57125791 57126885 65530561 65529467 NC_060933.1 CM039042.1 99.09 True local misassembly 57121790 57122707 65535202 65534285 NC_060933.1 CM039042.1 99.35 True local misassembly 57118307 57119383 65538470 65537394 NC_060933.1 CM039042.1 99.35 True local misassembly 57115875 57116431 65540871 65540315 NC_060933.1 CM039042.1 99.46 True local misassembly 57113034 57113970 65543697 65542761 NC_060933.1 CM039042.1 99.47 True local misassembly 57109262 57110099 65547514 65546677 NC_060933.1 CM039042.1 99.52 True local misassembly 57108118 57108700 65548653 65548071 NC_060933.1 CM039042.1 99.66 True indel: indel (> 5bp) 57107389 57108097 65549362 65548654 NC_060933.1 CM039042.1 99.44 True indel: indel (> 5bp) 57106501 57107179 65550215 65549537 NC_060933.1 CM039042.1 99.71 True relocation, inconsistency = 3779582 53324993 53325533 65552141 65551601 NC_060933.1 CM039042.1 98.89 True indel: indel (> 5bp) 53324492 53324992 65552667 65552167 NC_060933.1 CM039042.1 99.2 True local misassembly 53322273 53322798 65554869 65554344 NC_060933.1 CM039042.1 99.62 True indel: indel (> 5bp) 53321401 53321947 65555711 65555165 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = -13151152 66471129 66471680 65557135 65556584 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = 9382237 57082445 57085252 65563507 65560775 NC_060933.1 CM039042.1 95.15 True fake: not a misassembly (possible transposable element) 74082374 74085309 65563879 65566839 NC_060933.1 CM039042.1 95.89 True fake: not a misassembly (possible transposable element) 57079437 57080005 65569702 65569134 NC_060933.1 CM039042.1 99.3 True local misassembly 57076792 57077490 65572402 65571704 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = -10611523 67685526 67687921 65575236 65572796 NC_060933.1 CM039042.1 96.81 True relocation, inconsistency = 7572097 60110533 60112900 65578138 65575765 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = -15226551 75332349 75333111 65582873 65582111 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = 3232755 72096778 72098185 65585689 65584282 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = 4444228 67649545 67650234 65588694 65588005 NC_060933.1 CM039042.1 99.71 True relocation, inconsistency = 5257007 62389245 62389932 65591300 65591987 NC_060933.1 CM039042.1 98.55 True relocation, inconsistency = 9128308 53258362 53259008 65594562 65593916 NC_060933.1 CM039042.1 98.76 True relocation, inconsistency = -7341246 60598080 60599588 65596090 65594582 NC_060933.1 CM039042.1 97.7 True local misassembly 60595002 60596540 65598715 65597187 NC_060933.1 CM039042.1 97.17 True relocation, inconsistency = -14689669 75278073 75284670 65605288 65598716 NC_060933.1 CM039042.1 95.5 True relocation, inconsistency = -318253 75593011 75594602 65608608 65607012 NC_060933.1 CM039042.1 97.88 True indel: indel (> 5bp) 75591117 75592953 65610477 65608651 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = 3074552 72510040 72515735 65611307 65617019 NC_060933.1 CM039042.1 95.57 True relocation, inconsistency = 3076459 75593011 75594602 65619427 65617836 NC_060933.1 CM039042.1 97.76 True indel: indel (> 5bp) 75591714 75592953 65620709 65619470 NC_060933.1 CM039042.1 99.76 True local misassembly 75589226 75590622 65622733 65621337 NC_060933.1 CM039042.1 99.79 True local misassembly 75581611 75586303 65629959 65625252 NC_060933.1 CM039042.1 99.0 True fake: not a misassembly (possible transposable element) 75593911 75598697 65634743 65629992 NC_060933.1 CM039042.1 98.13 True fake: not a misassembly (possible transposable element) 75548555 75578526 65664879 65634744 NC_060933.1 CM039042.1 97.85 True relocation, inconsistency = 10942640 64605218 64605798 65664996 65665576 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = 7656341 72267792 72273970 65671229 65677512 NC_060933.1 CM039042.1 95.76 True relocation, inconsistency = 5844799 66420539 66422904 65679991 65677601 NC_060933.1 CM039042.1 97.41 True local misassembly 66423464 66425498 65681971 65679992 NC_060933.1 CM039042.1 95.36 True relocation, inconsistency = 10583936 55829234 55838574 65692170 65682925 NC_060933.1 CM039042.1 95.96 True relocation, inconsistency = -4211940 60034782 60040664 65698578 65692680 NC_060933.1 CM039042.1 95.04 True relocation, inconsistency = -15509396 75543154 75544003 65699602 65698753 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 75541971 75542712 65700775 65700034 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 75540792 75541965 65701949 65700776 NC_060933.1 CM039042.1 100.0 True local misassembly 75538954 75539846 65703072 65702180 NC_060933.1 CM039042.1 99.78 True indel: indel (> 5bp) 75537789 75538853 65704212 65703148 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 75536446 75537489 65705540 65704497 NC_060933.1 CM039042.1 99.62 True local misassembly 75534283 75535771 65707713 65706225 NC_060933.1 CM039042.1 99.26 True relocation, inconsistency = 2617485 72915752 72916797 65707714 65708759 NC_060933.1 CM039042.1 99.18 True local misassembly 72919038 72919644 65711060 65711666 NC_060933.1 CM039042.1 99.51 True indel: indel (<= 5bp) 72919645 72920283 65711672 65712310 NC_060933.1 CM039042.1 99.84 True local misassembly 72920512 72921065 65712754 65713307 NC_060933.1 CM039042.1 99.1 True relocation, inconsistency = 12928895 59984542 59991187 65720338 65713737 NC_060933.1 CM039042.1 96.45 True relocation, inconsistency = -15529894 75505744 75514435 65729075 65720339 NC_060933.1 CM039042.1 98.45 True relocation, inconsistency = 13542538 61961645 61962930 65730636 65729351 NC_060933.1 CM039042.1 99.07 True relocation, inconsistency = 9045945 52914036 52914540 65731796 65732300 NC_060933.1 CM039042.1 99.6 True local misassembly 52915607 52916150 65733272 65733815 NC_060933.1 CM039042.1 99.26 True local misassembly 52917515 52918098 65735140 65735723 NC_060933.1 CM039042.1 100.0 True local misassembly 52919075 52919748 65736900 65737573 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 20021118 72940867 72945903 65737574 65742625 NC_060933.1 CM039042.1 97.49 True relocation, inconsistency = -695385 72258855 72259475 65750962 65751582 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 11873867 60383324 60384330 65753241 65752240 NC_060933.1 CM039042.1 98.41 True relocation, inconsistency = 11621695 72009713 72010804 65756929 65758030 NC_060933.1 CM039042.1 98.04 True relocation, inconsistency = 410497 72421302 72423835 65758031 65760599 NC_060933.1 CM039042.1 95.25 True relocation, inconsistency = 3563002 68854672 68857450 65764222 65761449 NC_060933.1 CM039042.1 95.82 True relocation, inconsistency = 7227392 61626473 61627279 65765034 65764223 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = 6453002 55170674 55173470 65765035 65767826 NC_060933.1 CM039042.1 95.29 True relocation, inconsistency = 292302 54877454 54877962 65768744 65768236 NC_060933.1 CM039042.1 98.04 True relocation, inconsistency = 17139990 72019122 72019723 65769914 65770505 NC_060933.1 CM039042.1 97.31 True relocation, inconsistency = 18099865 53914646 53919256 65775111 65770506 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = -6547362 60459166 60459740 65777953 65777379 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 60458218 60459025 65778896 65778089 NC_060933.1 CM039042.1 98.89 True local misassembly 60456715 60457688 65780399 65779426 NC_060933.1 CM039042.1 98.97 True local misassembly 60453691 60454492 65782644 65781843 NC_060933.1 CM039042.1 99.63 True local misassembly 60448204 60448858 65789653 65788999 NC_060933.1 CM039042.1 98.63 True indel: indel (> 5bp) 60447286 60447959 65790581 65789908 NC_060933.1 CM039042.1 98.52 True indel: indel (> 5bp) 60446418 60447039 65791504 65790883 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = -13574764 74018420 74019273 65794266 65793413 NC_060933.1 CM039042.1 98.59 True local misassembly 74017594 74018139 65795246 65794701 NC_060933.1 CM039042.1 98.9 True local misassembly 74015188 74015975 65797526 65796739 NC_060933.1 CM039042.1 98.73 True relocation, inconsistency = -1451117 75445704 75464043 65818067 65799788 NC_060933.1 CM039042.1 97.4 True relocation, inconsistency = 11798 75431883 75432698 65820090 65819275 NC_060933.1 CM039042.1 99.51 True indel: indel (> 5bp) 75431358 75431882 65820625 65820101 NC_060933.1 CM039042.1 99.81 True indel: indel (<= 5bp) 75429884 75431352 65822094 65820626 NC_060933.1 CM039042.1 99.86 True indel: indel (<= 5bp) 75429329 75429878 65822644 65822095 NC_060933.1 CM039042.1 99.82 True indel: indel (> 5bp) 75428019 75428897 65823904 65823026 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = 3152715 72273198 72275032 65826000 65824176 NC_060933.1 CM039042.1 96.33 True local misassembly 72269309 72271434 65829872 65827777 NC_060933.1 CM039042.1 96.72 True relocation, inconsistency = -3147317 75413843 75416100 65832680 65830398 NC_060933.1 CM039042.1 96.92 True local misassembly 75402433 75411477 65843098 65834049 NC_060933.1 CM039042.1 97.98 True local misassembly 75385718 75404670 65862409 65843099 NC_060933.1 CM039042.1 95.92 True relocation, inconsistency = -12511 75386351 75398228 65874705 65862410 NC_060933.1 CM039042.1 95.04 True relocation, inconsistency = 7644 75369564 75378706 65883879 65874706 NC_060933.1 CM039042.1 98.46 True local misassembly 75353236 75367661 65898341 65883880 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 2885011 72463881 72468200 65898342 65902671 NC_060933.1 CM039042.1 96.43 True local misassembly 72462450 72470932 65902672 65911139 NC_060933.1 CM039042.1 97.48 True relocation, inconsistency = 2863163 75334132 75335940 65912898 65911140 NC_060933.1 CM039042.1 95.93 True local misassembly 75322958 75330576 65920486 65912899 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = 955526 74365706 74367431 65922212 65920487 NC_060933.1 CM039042.1 95.83 True relocation, inconsistency = -946774 75276304 75312479 65957690 65922213 NC_060933.1 CM039042.1 97.02 True relocation, inconsistency = -8296 75283719 75284288 65958571 65958002 NC_060933.1 CM039042.1 99.82 True local misassembly 75282171 75282952 65960104 65959323 NC_060933.1 CM039042.1 99.1 True indel: indel (> 5bp) 75281570 75282155 65960690 65960105 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 75280675 75281197 65961590 65961068 NC_060933.1 CM039042.1 99.43 True relocation, inconsistency = 896546 74381371 74382251 65964353 65963468 NC_060933.1 CM039042.1 95.54 True relocation, inconsistency = -885870 75246131 75267087 65985508 65964507 NC_060933.1 CM039042.1 98.34 True relocation, inconsistency = 7089 75233358 75239041 65991042 65985509 NC_060933.1 CM039042.1 96.17 True local misassembly 75219082 75239377 66011459 65991199 NC_060933.1 CM039042.1 98.43 True local misassembly 75214869 75217087 66013698 66011460 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = 22475 75184825 75192393 66021287 66013699 NC_060933.1 CM039042.1 99.0 True local misassembly 75184861 75186256 66022693 66021288 NC_060933.1 CM039042.1 99.19 True local misassembly 75182884 75186292 66026097 66022694 NC_060933.1 CM039042.1 99.36 True fake: not a misassembly (possible transposable element) 75064675 75065486 66026899 66026098 NC_060933.1 CM039042.1 95.26 True fake: not a misassembly (possible transposable element) 75184825 75186515 66028598 66026913 NC_060933.1 CM039042.1 99.41 True fake: not a misassembly (possible transposable element) 75064675 75067063 66031806 66029378 NC_060933.1 CM039042.1 95.19 True fake: not a misassembly (possible transposable element) 75184861 75186515 66033464 66031820 NC_060933.1 CM039042.1 99.17 True local misassembly 75182884 75186292 66036883 66033465 NC_060933.1 CM039042.1 98.95 True local misassembly 75184861 75186515 66039353 66037699 NC_060933.1 CM039042.1 99.12 True local misassembly 75182884 75186292 66042762 66039354 NC_060933.1 CM039042.1 99.21 True fake: not a misassembly (possible transposable element) 75064670 75065486 66043569 66042763 NC_060933.1 CM039042.1 95.07 True fake: not a misassembly (possible transposable element) 75183013 75186515 66047070 66043583 NC_060933.1 CM039042.1 98.72 True local misassembly 75176816 75182918 66055467 66049340 NC_060933.1 CM039042.1 99.27 True local misassembly 75155352 75172698 66072959 66055468 NC_060933.1 CM039042.1 96.8 True local misassembly 75147401 75151091 66076695 66072960 NC_060933.1 CM039042.1 98.01 True local misassembly 75137774 75140597 66079504 66076696 NC_060933.1 CM039042.1 98.67 True local misassembly 75133777 75136344 66082119 66079532 NC_060933.1 CM039042.1 95.4 True relocation, inconsistency = -8228 75140487 75141099 66083637 66083025 NC_060933.1 CM039042.1 99.51 True local misassembly 75139184 75139917 66084960 66084227 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 75138684 75139183 66085465 66084966 NC_060933.1 CM039042.1 99.8 True local misassembly 75136142 75137113 66087982 66087011 NC_060933.1 CM039042.1 99.49 True indel: indel (<= 5bp) 75135642 75136141 66088487 66087988 NC_060933.1 CM039042.1 99.0 True local misassembly 75134171 75134758 66089967 66089380 NC_060933.1 CM039042.1 99.83 True indel: stretch of mismatches 75133066 75133910 66091072 66090228 NC_060933.1 CM039042.1 99.41 True local misassembly 75128789 75129381 66092798 66092206 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 75127972 75128698 66093625 66092899 NC_060933.1 CM039042.1 99.86 True local misassembly 75123831 75127989 66099307 66095134 NC_060933.1 CM039042.1 97.25 True local misassembly 75110365 75124683 66113581 66099308 NC_060933.1 CM039042.1 98.78 True relocation, inconsistency = 1944863 73163351 73165501 66113582 66115722 NC_060933.1 CM039042.1 95.04 True relocation, inconsistency = 20029240 53131490 53132008 66118343 66117825 NC_060933.1 CM039042.1 97.88 True relocation, inconsistency = 18654837 71788174 71790978 66119672 66122476 NC_060933.1 CM039042.1 95.11 True relocation, inconsistency = 3292872 75084128 75087447 66126032 66122723 NC_060933.1 CM039042.1 96.18 True relocation, inconsistency = 12585 75054932 75071542 66142144 66126033 NC_060933.1 CM039042.1 95.14 True fake: not a misassembly (possible transposable element) 54554058 54555093 66146039 66145009 NC_060933.1 CM039042.1 95.07 True fake: not a misassembly (possible transposable element) 75042919 75051562 66154673 66146040 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = 17776505 57265752 57266353 66155335 66154734 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = -15527482 72790149 72790938 66158425 66157631 NC_060933.1 CM039042.1 95.16 True relocation, inconsistency = 1711981 74503956 74504675 66159462 66160181 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = -11450218 63058279 63059017 66164003 66164736 NC_060933.1 CM039042.1 97.78 True relocation, inconsistency = 11908841 51147278 51149437 66166886 66164737 NC_060933.1 CM039042.1 97.18 True relocation, inconsistency = -23910572 75053543 75056643 66171178 66168093 NC_060933.1 CM039042.1 95.3 True relocation, inconsistency = 10544 75037263 75042957 66176943 66171220 NC_060933.1 CM039042.1 98.33 True local misassembly 75023984 75033879 66186864 66176944 NC_060933.1 CM039042.1 98.14 True relocation, inconsistency = -25359 75042919 75049342 66193283 66186865 NC_060933.1 CM039042.1 99.18 True relocation, inconsistency = 2842336 72196842 72197630 66197029 66196236 NC_060933.1 CM039042.1 95.15 True relocation, inconsistency = 2305294 74503956 74504675 66198061 66198780 NC_060933.1 CM039042.1 98.75 True relocation, inconsistency = -11450198 63058279 63059017 66202582 66203310 NC_060933.1 CM039042.1 97.55 True relocation, inconsistency = 11908841 51147278 51149437 66205470 66203311 NC_060933.1 CM039042.1 97.33 True relocation, inconsistency = -23910577 75053543 75056773 66209762 66206552 NC_060933.1 CM039042.1 95.57 True relocation, inconsistency = 10544 75041821 75042957 66210940 66209804 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = 11712 75028832 75030027 66212217 66211022 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 75028132 75028644 66212892 66212380 NC_060933.1 CM039042.1 99.22 True indel: stretch of mismatches 75026914 75027802 66214110 66213222 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 75026349 75026903 66214665 66214111 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 75025384 75026348 66215680 66214716 NC_060933.1 CM039042.1 99.79 True indel: indel (> 5bp) 75023882 75025206 66217162 66215838 NC_060933.1 CM039042.1 99.92 True local misassembly 75022515 75023222 66218509 66217802 NC_060933.1 CM039042.1 99.72 True local misassembly 75021197 75022514 66220102 66218785 NC_060933.1 CM039042.1 99.62 True local misassembly 75019263 75020551 66222025 66220737 NC_060933.1 CM039042.1 99.77 True indel: indel (> 5bp) 75018265 75019062 66223013 66222216 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 75016714 75018208 66224559 66223065 NC_060933.1 CM039042.1 99.46 True indel: indel (> 5bp) 75015664 75016713 66225619 66224570 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 75014605 75015233 66226698 66226070 NC_060933.1 CM039042.1 99.68 True local misassembly 75013355 75014445 66228433 66227343 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 75012666 75013349 66229117 66228434 NC_060933.1 CM039042.1 99.85 True local misassembly 75011166 75011915 66230622 66229873 NC_060933.1 CM039042.1 99.6 True local misassembly 75009631 75010146 66231847 66231332 NC_060933.1 CM039042.1 98.84 True local misassembly 75007617 75008501 66233841 66232957 NC_060933.1 CM039042.1 99.32 True indel: indel (> 5bp) 75006323 75007426 66235120 66234017 NC_060933.1 CM039042.1 99.37 True local misassembly 75005008 75006091 66240588 66239505 NC_060933.1 CM039042.1 99.72 True relocation, inconsistency = 11135 74984662 74993072 66249724 66241389 NC_060933.1 CM039042.1 95.39 True relocation, inconsistency = -9859 74975030 74994520 66269163 66249725 NC_060933.1 CM039042.1 98.4 True fake: not a misassembly (possible transposable element) 57232480 57233952 66270666 66269164 NC_060933.1 CM039042.1 96.93 True fake: not a misassembly (possible transposable element) 74958885 74970716 66282907 66271342 NC_060933.1 CM039042.1 96.84 True relocation, inconsistency = 13851714 61105237 61105843 66284235 66284841 NC_060933.1 CM039042.1 98.35 True relocation, inconsistency = 2239704 63347294 63352323 66286588 66291692 NC_060933.1 CM039042.1 95.84 True relocation, inconsistency = 8240046 71594420 71595014 66294337 66293743 NC_060933.1 CM039042.1 98.82 True relocation, inconsistency = 16297968 55294159 55295267 66295522 66296630 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = 2664961 57960229 57960882 66296631 66297294 NC_060933.1 CM039042.1 96.95 True local misassembly 57961912 57967073 66297306 66302472 NC_060933.1 CM039042.1 95.66 True local misassembly 57969060 57970028 66304366 66305339 NC_060933.1 CM039042.1 95.35 True relocation, inconsistency = 10624588 68596404 68597945 66307127 66308644 NC_060933.1 CM039042.1 97.28 True relocation, inconsistency = 6356618 74954977 74959025 66313091 66309058 NC_060933.1 CM039042.1 96.76 True local misassembly 74954977 74958211 66317354 66314195 NC_060933.1 CM039042.1 96.43 True fake: not a misassembly (possible transposable element) 68580718 68581812 66317355 66318444 NC_060933.1 CM039042.1 96.12 True fake: not a misassembly (possible transposable element) 74949342 74950654 66320745 66319433 NC_060933.1 CM039042.1 99.85 True indel: indel (<= 5bp) 74947962 74949336 66322120 66320746 NC_060933.1 CM039042.1 99.64 True indel: stretch of mismatches 74946802 74947609 66323280 66322473 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 74945930 74946791 66324142 66323281 NC_060933.1 CM039042.1 99.88 True local misassembly 74943449 74945327 66326298 66324420 NC_060933.1 CM039042.1 99.73 True relocation, inconsistency = 13884674 61058187 61058774 66326299 66326886 NC_060933.1 CM039042.1 98.98 True relocation, inconsistency = -3093520 57965341 57966315 66326973 66327947 NC_060933.1 CM039042.1 98.87 True relocation, inconsistency = 10623261 68596409 68599218 66334780 66337550 NC_060933.1 CM039042.1 96.29 True relocation, inconsistency = 6327569 74927267 74927919 66338682 66338030 NC_060933.1 CM039042.1 99.54 True indel: indel (> 5bp) 74925435 74926891 66340504 66339048 NC_060933.1 CM039042.1 99.73 True indel: stretch of mismatches 74924533 74925278 66341406 66340661 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 74923867 74924532 66342077 66341412 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74923013 74923806 66342921 66342128 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74921631 74922518 66344298 66343411 NC_060933.1 CM039042.1 99.89 True local misassembly 74920154 74921001 66345525 66344678 NC_060933.1 CM039042.1 99.76 True local misassembly 74918451 74918977 66347024 66346498 NC_060933.1 CM039042.1 99.05 True local misassembly 74912450 74917341 66353210 66348307 NC_060933.1 CM039042.1 96.93 True relocation, inconsistency = 15165653 59744455 59745042 66355552 66354965 NC_060933.1 CM039042.1 98.81 True local misassembly 59742860 59743588 66357124 66356396 NC_060933.1 CM039042.1 99.31 True local misassembly 59736912 59737469 66363335 66362778 NC_060933.1 CM039042.1 99.28 True local misassembly 59735659 59736192 66364567 66364034 NC_060933.1 CM039042.1 99.25 True relocation, inconsistency = 8315 59723765 59724341 66368146 66367570 NC_060933.1 CM039042.1 98.27 True indel: indel (> 5bp) 59723174 59723675 66368672 66368171 NC_060933.1 CM039042.1 99.2 True relocation, inconsistency = -14717566 74436833 74437796 66372579 66371616 NC_060933.1 CM039042.1 98.86 True relocation, inconsistency = -477195 74910493 74912448 66376114 66374159 NC_060933.1 CM039042.1 99.85 True indel: stretch of mismatches 74909250 74910161 66377357 66376446 NC_060933.1 CM039042.1 99.78 True local misassembly 74906782 74907669 66379760 66378873 NC_060933.1 CM039042.1 98.2 True relocation, inconsistency = 49830 74845233 74855389 66391479 66381323 NC_060933.1 CM039042.1 98.95 True relocation, inconsistency = 52221 74783431 74791228 66401125 66393263 NC_060933.1 CM039042.1 97.86 True relocation, inconsistency = 22253982 52528396 52529173 66402178 66401401 NC_060933.1 CM039042.1 99.23 True relocation, inconsistency = -2064408 54589392 54590707 66405545 66404275 NC_060933.1 CM039042.1 95.61 True relocation, inconsistency = -20191018 74778872 74780409 66407083 66405546 NC_060933.1 CM039042.1 99.27 True local misassembly 74762049 74775386 66420436 66407084 NC_060933.1 CM039042.1 98.25 True local misassembly 74750413 74759202 66429461 66420693 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = 18438 74727117 74731974 66434309 66429462 NC_060933.1 CM039042.1 95.63 True local misassembly 74718999 74729948 66445269 66434310 NC_060933.1 CM039042.1 98.69 True local misassembly 74717183 74720901 66449043 66445305 NC_060933.1 CM039042.1 99.04 True local misassembly 74712061 74716099 66453069 66449046 NC_060933.1 CM039042.1 98.72 True relocation, inconsistency = 11298649 63411828 63413409 66453072 66454663 NC_060933.1 CM039042.1 97.01 True relocation, inconsistency = 6983620 70398224 70399464 66455858 66457098 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = -4849152 65550628 65551327 66457414 66458118 NC_060933.1 CM039042.1 96.43 True relocation, inconsistency = 9155334 74706692 74712258 66463700 66458119 NC_060933.1 CM039042.1 98.18 True local misassembly 74699186 74710561 66475166 66463701 NC_060933.1 CM039042.1 97.82 True relocation, inconsistency = 11152386 63546257 63546798 66475714 66475168 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 41385 63503983 63504871 66475715 66476613 NC_060933.1 CM039042.1 98.44 True relocation, inconsistency = 11181619 74687251 74688919 66479047 66477374 NC_060933.1 CM039042.1 97.45 True relocation, inconsistency = 3220419 71465680 71466306 66479573 66480199 NC_060933.1 CM039042.1 98.56 True relocation, inconsistency = -2836781 68633412 68634582 66484086 66485256 NC_060933.1 CM039042.1 97.21 True relocation, inconsistency = -5133121 63502111 63502782 66485906 66486577 NC_060933.1 CM039042.1 99.11 True indel: stretch of mismatches 63503030 63503554 66486825 66487349 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = 11181299 74687251 74688919 66491425 66489747 NC_060933.1 CM039042.1 97.23 True fake: not a misassembly (possible transposable element) 71465680 71466306 66491951 66492577 NC_060933.1 CM039042.1 98.56 True fake: not a misassembly (possible transposable element) 74687251 74691045 66497011 66493242 NC_060933.1 CM039042.1 98.27 True fake: not a misassembly (possible transposable element) 71465680 71466306 66497537 66498163 NC_060933.1 CM039042.1 98.25 True fake: not a misassembly (possible transposable element) 74688669 74691045 66501199 66498838 NC_060933.1 CM039042.1 98.11 True local misassembly 74688477 74689089 66503977 66503365 NC_060933.1 CM039042.1 98.21 True relocation, inconsistency = 11580 74651015 74654565 66529824 66526309 NC_060933.1 CM039042.1 98.37 True relocation, inconsistency = 51001 74597364 74599313 66532474 66530525 NC_060933.1 CM039042.1 98.42 True relocation, inconsistency = 36436 74559223 74560104 66534179 66533298 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 74558564 74559222 66534843 66534185 NC_060933.1 CM039042.1 99.7 True indel: indel (> 5bp) 74557458 74558456 66535924 66534926 NC_060933.1 CM039042.1 99.6 True indel: indel (> 5bp) 74556291 74557203 66537066 66536154 NC_060933.1 CM039042.1 99.89 True local misassembly 74555103 74556257 66538494 66537340 NC_060933.1 CM039042.1 99.05 True local misassembly 74558784 74559733 66540542 66539593 NC_060933.1 CM039042.1 99.79 True indel: indel (> 5bp) 74557458 74558456 66541853 66540855 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 74556258 74556960 66543033 66542331 NC_060933.1 CM039042.1 99.86 True local misassembly 74555621 74556257 66543905 66543269 NC_060933.1 CM039042.1 99.22 True local misassembly 74554516 74555102 66544921 66544335 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 74553099 74554515 66546353 66544937 NC_060933.1 CM039042.1 99.58 True indel: stretch of mismatches 74551828 74552819 66547624 66546633 NC_060933.1 CM039042.1 99.5 True local misassembly 74544658 74545301 66549722 66549079 NC_060933.1 CM039042.1 99.84 True relocation, inconsistency = 20551 74515217 74523632 66558537 66550197 NC_060933.1 CM039042.1 98.2 True relocation, inconsistency = 19968342 54545668 54546386 66559015 66559723 NC_060933.1 CM039042.1 97.67 True fake: not a misassembly (possible transposable element) 68607386 68608201 66559724 66560524 NC_060933.1 CM039042.1 95.28 True fake: not a misassembly (possible transposable element) 54544749 54546105 66561512 66562863 NC_060933.1 CM039042.1 98.16 True relocation, inconsistency = 5232091 59780461 59781182 66565844 66565128 NC_060933.1 CM039042.1 98.2 True relocation, inconsistency = -11220 59782256 59782872 66575269 66574653 NC_060933.1 CM039042.1 99.03 True local misassembly 59780415 59780962 66576675 66576128 NC_060933.1 CM039042.1 99.09 True indel: indel (> 5bp) 59779635 59780240 66577445 66576840 NC_060933.1 CM039042.1 98.84 True local misassembly 59778178 59778682 66578913 66578409 NC_060933.1 CM039042.1 99.41 True indel: indel (> 5bp) 59777059 59777697 66580047 66579409 NC_060933.1 CM039042.1 98.44 True relocation, inconsistency = -10614793 70390208 70390972 66581691 66580927 NC_060933.1 CM039042.1 99.08 True local misassembly 70386949 70387722 66584950 66584177 NC_060933.1 CM039042.1 99.22 True local misassembly 70384815 70385353 66587184 66586646 NC_060933.1 CM039042.1 98.7 True indel: indel (> 5bp) 70383453 70384624 66588566 66587395 NC_060933.1 CM039042.1 98.81 True local misassembly 70380906 70381483 66591082 66590505 NC_060933.1 CM039042.1 98.44 True local misassembly 70379695 70380434 66591978 66591239 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = 10623494 59755279 59755955 66592900 66592224 NC_060933.1 CM039042.1 98.82 True indel: stretch of mismatches 59754479 59755017 66593700 66593162 NC_060933.1 CM039042.1 98.52 True indel: indel (> 5bp) 59753965 59754478 66594234 66593721 NC_060933.1 CM039042.1 99.03 True indel: indel (> 5bp) 59753117 59753849 66595067 66594335 NC_060933.1 CM039042.1 99.18 True local misassembly 59750332 59750903 66597961 66597390 NC_060933.1 CM039042.1 97.9 True indel: indel (> 5bp) 59749359 59750268 66598914 66598005 NC_060933.1 CM039042.1 97.91 True relocation, inconsistency = 10027144 69778208 69778941 66599710 66600443 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = 12559972 57216760 57217931 66601919 66600748 NC_060933.1 CM039042.1 99.4 True indel: indel (> 5bp) 57216090 57216613 66602599 66602076 NC_060933.1 CM039042.1 99.24 True indel: indel (<= 5bp) 57215398 57216089 66603296 66602605 NC_060933.1 CM039042.1 98.7 True relocation, inconsistency = -13160058 70373576 70375407 66605171 66603345 NC_060933.1 CM039042.1 98.09 True relocation, inconsistency = -4070737 74442633 74443324 66606851 66606160 NC_060933.1 CM039042.1 99.42 True local misassembly 74441511 74442030 66607958 66607439 NC_060933.1 CM039042.1 98.65 True indel: indel (<= 5bp) 74440761 74441510 66608713 66607964 NC_060933.1 CM039042.1 98.93 True local misassembly 74439286 74439882 66609958 66609362 NC_060933.1 CM039042.1 99.33 True indel: indel (<= 5bp) 74438738 74439280 66610501 66609959 NC_060933.1 CM039042.1 99.26 True local misassembly 74437083 74437857 66612166 66611392 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = -75306 74485295 74509891 66639024 66614664 NC_060933.1 CM039042.1 97.79 True local misassembly 74485694 74490370 66644168 66639472 NC_060933.1 CM039042.1 98.53 True local misassembly 74478165 74484814 66650789 66644169 NC_060933.1 CM039042.1 98.25 True relocation, inconsistency = 7600770 66874487 66877394 66653722 66650790 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = -7568061 74441533 74442240 66654737 66654030 NC_060933.1 CM039042.1 99.15 True local misassembly 74440761 74441532 66655888 66655117 NC_060933.1 CM039042.1 98.96 True local misassembly 74438493 74439834 66658156 66656815 NC_060933.1 CM039042.1 99.48 True indel: indel (> 5bp) 74436833 74438332 66659831 66658332 NC_060933.1 CM039042.1 99.13 True local misassembly 74435110 74435749 66661569 66660930 NC_060933.1 CM039042.1 99.06 True indel: indel (<= 5bp) 74434199 74435109 66662485 66661575 NC_060933.1 CM039042.1 99.45 True indel: indel (> 5bp) 74433167 74434183 66663502 66662486 NC_060933.1 CM039042.1 99.72 True local misassembly 74427950 74436972 66672475 66663503 NC_060933.1 CM039042.1 97.96 True relocation, inconsistency = -81498 74505555 74509447 66676363 66672476 NC_060933.1 CM039042.1 97.04 True relocation, inconsistency = 71984 74416486 74433570 66693617 66676364 NC_060933.1 CM039042.1 95.37 True relocation, inconsistency = 14729037 59686758 59687348 66694308 66693718 NC_060933.1 CM039042.1 98.48 True local misassembly 59685816 59686362 66694990 66694444 NC_060933.1 CM039042.1 99.47 True relocation, inconsistency = -14763898 74448681 74449713 66696023 66694991 NC_060933.1 CM039042.1 100.0 True local misassembly 74441892 74446473 66700555 66696024 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = -10493 74448681 74449352 66704259 66703588 NC_060933.1 CM039042.1 100.0 True local misassembly 74420578 74446473 66730699 66704260 NC_060933.1 CM039042.1 96.68 True relocation, inconsistency = -38125 74457241 74458108 66732161 66731294 NC_060933.1 CM039042.1 99.65 True local misassembly 74455343 74456055 66734229 66733517 NC_060933.1 CM039042.1 98.6 True indel: indel (> 5bp) 74454134 74455004 66735458 66734588 NC_060933.1 CM039042.1 99.43 True indel: indel (<= 5bp) 74453427 74454133 66736170 66735464 NC_060933.1 CM039042.1 99.86 True local misassembly 74451104 74451828 66738613 66737889 NC_060933.1 CM039042.1 99.45 True relocation, inconsistency = 47094 74402299 74402891 66740324 66739732 NC_060933.1 CM039042.1 99.36 True local misassembly 74395991 74399683 66743997 66740325 NC_060933.1 CM039042.1 98.62 True relocation, inconsistency = 16235958 58151986 58152524 66751506 66752044 NC_060933.1 CM039042.1 98.33 True indel: indel (> 5bp) 58152535 58153064 66752045 66752574 NC_060933.1 CM039042.1 98.49 True local misassembly 58153887 58154643 66753332 66754088 NC_060933.1 CM039042.1 98.68 True indel: indel (> 5bp) 58154745 58155299 66754180 66754734 NC_060933.1 CM039042.1 99.1 True local misassembly 58155912 58156722 66755487 66756297 NC_060933.1 CM039042.1 98.03 True relocation, inconsistency = -10642 58151986 58152524 66762203 66762741 NC_060933.1 CM039042.1 98.14 True indel: indel (<= 5bp) 58152530 58153064 66762742 66763276 NC_060933.1 CM039042.1 98.5 True indel: indel (> 5bp) 58153504 58154643 66763706 66764845 NC_060933.1 CM039042.1 99.12 True local misassembly 58155910 58156674 66766287 66767051 NC_060933.1 CM039042.1 97.91 True relocation, inconsistency = 16230642 74391723 74392759 66772451 66771405 NC_060933.1 CM039042.1 98.55 True local misassembly 74383694 74387215 66775908 66772452 NC_060933.1 CM039042.1 97.31 True local misassembly 74381881 74383732 66780117 66778266 NC_060933.1 CM039042.1 99.68 True local misassembly 74380748 74381298 66781230 66780680 NC_060933.1 CM039042.1 98.91 True local misassembly 74379038 74379775 66782227 66781490 NC_060933.1 CM039042.1 99.86 True indel: indel (> 5bp) 74378173 74378699 66783107 66782581 NC_060933.1 CM039042.1 98.86 True local misassembly 74376985 74377728 66784380 66783637 NC_060933.1 CM039042.1 99.33 True local misassembly 74375169 74375844 66785278 66784603 NC_060933.1 CM039042.1 99.85 True local misassembly 74364298 74370445 66792056 66786019 NC_060933.1 CM039042.1 96.58 True local misassembly 74360630 74361487 66792914 66792057 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = 12647 74340603 74347961 66800304 66792936 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 2081876 76429838 76430625 66800305 66801102 NC_060933.1 CM039042.1 96.83 True relocation, inconsistency = 2070915 74343569 74358922 66816629 66801103 NC_060933.1 CM039042.1 97.43 True relocation, inconsistency = 11811 74325802 74327114 66822585 66821273 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 74324716 74325598 66823661 66822779 NC_060933.1 CM039042.1 99.66 True indel: indel (<= 5bp) 74323701 74324715 66824681 66823667 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 74322957 74323695 66825420 66824682 NC_060933.1 CM039042.1 99.46 True indel: indel (<= 5bp) 74322073 74322951 66826299 66825421 NC_060933.1 CM039042.1 99.54 True indel: indel (> 5bp) 74321168 74321828 66827219 66826559 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74320008 74320973 66828389 66827424 NC_060933.1 CM039042.1 99.48 True indel: indel (<= 5bp) 74319274 74319938 66829128 66828464 NC_060933.1 CM039042.1 99.1 True local misassembly 74317687 74318330 66831505 66830862 NC_060933.1 CM039042.1 99.84 True local misassembly 74316465 74316985 66832787 66832267 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74315879 74316464 66833378 66832793 NC_060933.1 CM039042.1 99.66 True indel: indel (> 5bp) 74314763 74315457 66834449 66833755 NC_060933.1 CM039042.1 99.86 True indel: stretch of mismatches 74313537 74314377 66835675 66834835 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74312637 74313536 66836576 66835677 NC_060933.1 CM039042.1 99.78 True indel: indel (<= 5bp) 74312070 74312631 66837138 66836577 NC_060933.1 CM039042.1 99.64 True indel: indel (<= 5bp) 74311509 74312069 66837704 66837144 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74310517 74311145 66838686 66838058 NC_060933.1 CM039042.1 100.0 True local misassembly 74309327 74309929 66839871 66839269 NC_060933.1 CM039042.1 99.67 True indel: indel (> 5bp) 74308544 74309281 66840609 66839872 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 74307626 74308538 66841522 66840610 NC_060933.1 CM039042.1 99.56 True indel: indel (> 5bp) 74306412 74307261 66842716 66841867 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 74305527 74306401 66843591 66842717 NC_060933.1 CM039042.1 99.77 True fake: not a misassembly (possible transposable element) 64626685 64627273 66844784 66845372 NC_060933.1 CM039042.1 99.66 True fake: not a misassembly (possible transposable element) 74301423 74302238 66847701 66846881 NC_060933.1 CM039042.1 98.78 True fake: not a misassembly (possible transposable element) 64612162 64612691 66847893 66848422 NC_060933.1 CM039042.1 98.87 True fake: not a misassembly (possible transposable element) 74293845 74304558 66861990 66851136 NC_060933.1 CM039042.1 97.11 True local misassembly 74289305 74291839 66864520 66861991 NC_060933.1 CM039042.1 98.79 True local misassembly 74282805 74287687 66869712 66864755 NC_060933.1 CM039042.1 95.08 True relocation, inconsistency = 11862 74251571 74270942 66889219 66869713 NC_060933.1 CM039042.1 97.2 True relocation, inconsistency = 203953 74045937 74046892 66889945 66890900 NC_060933.1 CM039042.1 99.27 True local misassembly 74048526 74049134 66892534 66893142 NC_060933.1 CM039042.1 99.34 True relocation, inconsistency = -9405947 64643217 64643764 66893172 66893719 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = 9601178 74245605 74251634 66900481 66894382 NC_060933.1 CM039042.1 96.22 True relocation, inconsistency = 89770 74135062 74155558 66921184 66900758 NC_060933.1 CM039042.1 97.72 True relocation, inconsistency = 9500267 64633474 64634722 66921257 66922525 NC_060933.1 CM039042.1 96.15 True relocation, inconsistency = 9457475 74093281 74095897 66926220 66923609 NC_060933.1 CM039042.1 97.62 True local misassembly 74078259 74096798 66944622 66926228 NC_060933.1 CM039042.1 97.99 True relocation, inconsistency = 2644887 71428079 71433371 66949895 66944623 NC_060933.1 CM039042.1 97.2 True relocation, inconsistency = -2666991 74084295 74095065 66960535 66949900 NC_060933.1 CM039042.1 97.61 True local misassembly 74078296 74083625 66965845 66960536 NC_060933.1 CM039042.1 98.67 True relocation, inconsistency = 2644887 71414879 71433408 66984464 66965846 NC_060933.1 CM039042.1 97.18 True relocation, inconsistency = 8890651 62515526 62522873 66993120 66985819 NC_060933.1 CM039042.1 96.16 True relocation, inconsistency = -52184 62566726 62567455 66994104 66993375 NC_060933.1 CM039042.1 98.77 True indel: indel (<= 5bp) 62565124 62566720 66995701 66994105 NC_060933.1 CM039042.1 99.44 True indel: indel (<= 5bp) 62564437 62565123 66996393 66995707 NC_060933.1 CM039042.1 99.56 True relocation, inconsistency = 9542169 53021130 53021770 66996891 66997531 NC_060933.1 CM039042.1 99.06 True relocation, inconsistency = 8736062 61761098 61761722 67000797 67001421 NC_060933.1 CM039042.1 98.72 True local misassembly 61762151 61762851 67001940 67002640 NC_060933.1 CM039042.1 99.14 True indel: indel (> 5bp) 61762862 61763639 67002641 67003418 NC_060933.1 CM039042.1 98.84 True local misassembly 61763640 61764397 67003938 67004695 NC_060933.1 CM039042.1 98.55 True indel: indel (> 5bp) 61764818 61765467 67005136 67005785 NC_060933.1 CM039042.1 98.62 True indel: indel (> 5bp) 61765805 61766711 67006108 67007014 NC_060933.1 CM039042.1 99.01 True relocation, inconsistency = -8710752 53059136 53059823 67010191 67010878 NC_060933.1 CM039042.1 99.13 True local misassembly 53061519 53062139 67012484 67013104 NC_060933.1 CM039042.1 99.36 True indel: stretch of mismatches 53062544 53063048 67013509 67014013 NC_060933.1 CM039042.1 99.21 True local misassembly 53064051 53065247 67015111 67016307 NC_060933.1 CM039042.1 98.58 True relocation, inconsistency = 8761990 61831185 61831762 67020255 67020832 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 61832013 61832517 67021058 67021562 NC_060933.1 CM039042.1 99.8 True local misassembly 61834254 61835434 67023319 67024499 NC_060933.1 CM039042.1 99.58 True local misassembly 61836242 61836799 67024973 67025530 NC_060933.1 CM039042.1 99.46 True local misassembly 61837674 61838218 67026430 67026974 NC_060933.1 CM039042.1 99.63 True relocation, inconsistency = -8718851 53119527 53125827 67027134 67033549 NC_060933.1 CM039042.1 95.7 True local misassembly 53126661 53127614 67033550 67034498 NC_060933.1 CM039042.1 98.32 True relocation, inconsistency = 8730182 61858255 61858931 67034957 67035633 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = 9073 61870307 61870950 67037936 67038579 NC_060933.1 CM039042.1 99.22 True relocation, inconsistency = -8710426 53160909 53163638 67038964 67041653 NC_060933.1 CM039042.1 95.93 True relocation, inconsistency = 1490003 54654483 54655027 67042495 67043054 NC_060933.1 CM039042.1 96.79 True relocation, inconsistency = 18065285 72725233 72725766 67048508 67047975 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 19554472 53165203 53169635 67049634 67054041 NC_060933.1 CM039042.1 97.0 True relocation, inconsistency = 9321933 62491635 62492332 67054805 67054108 NC_060933.1 CM039042.1 99.71 True local misassembly 62489591 62490526 67056819 67055884 NC_060933.1 CM039042.1 99.47 True indel: indel (<= 5bp) 62488890 62489590 67057525 67056825 NC_060933.1 CM039042.1 99.29 True local misassembly 62486736 62488223 67059694 67058207 NC_060933.1 CM039042.1 98.86 True local misassembly 62485532 62486129 67060703 67060106 NC_060933.1 CM039042.1 99.5 True local misassembly 62483828 62484699 67062577 67061706 NC_060933.1 CM039042.1 99.08 True local misassembly 62479339 62480509 67064547 67063372 NC_060933.1 CM039042.1 97.46 True local misassembly 62479563 62481049 67069746 67068260 NC_060933.1 CM039042.1 99.26 True indel: stretch of mismatches 62478636 62479334 67070673 67069975 NC_060933.1 CM039042.1 99.57 True local misassembly 62477299 62478005 67072045 67071339 NC_060933.1 CM039042.1 99.29 True relocation, inconsistency = 9265208 53211194 53211843 67072293 67072942 NC_060933.1 CM039042.1 99.69 True relocation, inconsistency = 8720430 61933039 61934674 67073708 67075328 NC_060933.1 CM039042.1 97.93 True relocation, inconsistency = -77127 61858922 61859734 67076703 67077515 NC_060933.1 CM039042.1 98.4 True local misassembly 61860365 61860864 67078176 67078675 NC_060933.1 CM039042.1 99.0 True relocation, inconsistency = -8696810 53166181 53166801 67080802 67081422 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 1497876 54665662 54666725 67082407 67083480 NC_060933.1 CM039042.1 96.59 True relocation, inconsistency = 11813387 66486892 66487476 67090260 67090844 NC_060933.1 CM039042.1 98.8 True local misassembly 66489123 66490342 67092481 67093700 NC_060933.1 CM039042.1 98.77 True local misassembly 66491870 66492414 67095218 67095762 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = 6449020 72942382 72948469 67102792 67096710 NC_060933.1 CM039042.1 95.28 True relocation, inconsistency = 10989584 61952171 61952797 67102793 67103419 NC_060933.1 CM039042.1 99.47 True indel: indel (> 5bp) 61953007 61953572 67103604 67104169 NC_060933.1 CM039042.1 99.65 True indel: indel (> 5bp) 61953583 61954118 67104170 67104705 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 61954463 61955077 67105035 67105649 NC_060933.1 CM039042.1 99.84 True local misassembly 61956424 61957005 67106996 67107577 NC_060933.1 CM039042.1 98.97 True indel: indel (> 5bp) 61957036 61958042 67107598 67108604 NC_060933.1 CM039042.1 99.7 True indel: indel (> 5bp) 61958545 61959063 67109097 67109615 NC_060933.1 CM039042.1 99.04 True local misassembly 61959922 61960570 67110559 67111207 NC_060933.1 CM039042.1 100.0 True indel: stretch of mismatches 61960744 61961639 67111381 67112276 NC_060933.1 CM039042.1 99.78 True local misassembly 61963499 61964140 67113916 67114557 NC_060933.1 CM039042.1 99.38 True local misassembly 61964690 61965204 67115122 67115636 NC_060933.1 CM039042.1 99.22 True indel: indel (<= 5bp) 61965205 61966130 67115642 67116567 NC_060933.1 CM039042.1 99.24 True local misassembly 61967333 61967974 67118030 67118671 NC_060933.1 CM039042.1 99.38 True fake: not a misassembly (possible transposable element) 60007698 60008482 67121594 67122378 NC_060933.1 CM039042.1 99.36 True fake: not a misassembly (possible transposable element) 61977166 61977825 67122636 67123295 NC_060933.1 CM039042.1 99.09 True indel: indel (<= 5bp) 61977831 61979118 67123296 67124583 NC_060933.1 CM039042.1 99.38 True local misassembly 61980330 61981236 67125850 67126756 NC_060933.1 CM039042.1 99.56 True local misassembly 61981856 61982698 67127371 67128213 NC_060933.1 CM039042.1 99.05 True local misassembly 61985755 61986741 67131011 67131997 NC_060933.1 CM039042.1 99.49 True relocation, inconsistency = 9137392 71125871 71126399 67134263 67133735 NC_060933.1 CM039042.1 98.3 True local misassembly 71120475 71121324 67139769 67138920 NC_060933.1 CM039042.1 98.94 True local misassembly 71121330 71121882 67143057 67142505 NC_060933.1 CM039042.1 98.92 True indel: indel (> 5bp) 71120475 71121023 67143902 67143354 NC_060933.1 CM039042.1 98.72 True relocation, inconsistency = 1493166 72614539 72615113 67144252 67144826 NC_060933.1 CM039042.1 99.13 True indel: indel (> 5bp) 72615402 72616175 67145105 67145878 NC_060933.1 CM039042.1 99.1 True local misassembly 72618020 72618631 67147798 67148409 NC_060933.1 CM039042.1 99.51 True indel: indel (> 5bp) 72618967 72619764 67148730 67149527 NC_060933.1 CM039042.1 99.37 True relocation, inconsistency = -10632320 61990071 61991175 67152154 67153258 NC_060933.1 CM039042.1 99.0 True local misassembly 61986744 61992428 67153869 67159698 NC_060933.1 CM039042.1 95.07 True relocation, inconsistency = 8394096 53591776 53592647 67160564 67159699 NC_060933.1 CM039042.1 95.58 True local misassembly 53588475 53590664 67163762 67161569 NC_060933.1 CM039042.1 99.09 True relocation, inconsistency = 19246282 72838293 72838925 67165109 67165741 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = -596973 72242323 72244939 67166112 67168742 NC_060933.1 CM039042.1 95.4 True relocation, inconsistency = 588105 72835872 72836807 67171570 67172505 NC_060933.1 CM039042.1 99.57 True local misassembly 72837909 72838935 67173452 67174478 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = 1366439 71466307 71467102 67179641 67178846 NC_060933.1 CM039042.1 98.87 True indel: indel (> 5bp) 71465675 71466306 67180343 67179712 NC_060933.1 CM039042.1 98.73 True indel: indel (> 5bp) 71463351 71465425 67182667 67180553 NC_060933.1 CM039042.1 96.56 True relocation, inconsistency = 6252215 65204628 65206348 67189195 67187455 NC_060933.1 CM039042.1 96.92 True indel: indel (> 5bp) 65202294 65204378 67191519 67189405 NC_060933.1 CM039042.1 97.08 True relocation, inconsistency = 10273325 75480440 75481028 67194256 67194834 NC_060933.1 CM039042.1 95.93 True relocation, inconsistency = 19280013 56196524 56197258 67198742 67198003 NC_060933.1 CM039042.1 97.05 True relocation, inconsistency = -15746904 71941902 71942622 67200263 67199548 NC_060933.1 CM039042.1 96.92 True relocation, inconsistency = 18378143 53561789 53563758 67202233 67200264 NC_060933.1 CM039042.1 96.15 True relocation, inconsistency = 16935528 70500004 70500620 67202951 67203577 NC_060933.1 CM039042.1 95.83 True relocation, inconsistency = 8197470 62301013 62302533 67205093 67203578 NC_060933.1 CM039042.1 97.9 True local misassembly 62302701 62303853 67206236 67205094 NC_060933.1 CM039042.1 95.38 True relocation, inconsistency = 8751894 53549899 53550441 67207144 67206602 NC_060933.1 CM039042.1 99.82 True local misassembly 53547847 53548470 67209470 67208847 NC_060933.1 CM039042.1 98.88 True relocation, inconsistency = 9994378 63543493 63544100 67210115 67210722 NC_060933.1 CM039042.1 98.68 True indel: indel (> 5bp) 63544523 63545037 67211085 67211599 NC_060933.1 CM039042.1 98.06 True relocation, inconsistency = 11143261 74692266 74692998 67215567 67216299 NC_060933.1 CM039042.1 98.23 True local misassembly 74694528 74695091 67217804 67218367 NC_060933.1 CM039042.1 98.76 True indel: indel (> 5bp) 74695112 74695625 67218368 67218881 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = -11152784 63543515 63544100 67219555 67220140 NC_060933.1 CM039042.1 98.63 True indel: indel (> 5bp) 63544523 63545037 67220503 67221017 NC_060933.1 CM039042.1 98.06 True relocation, inconsistency = 11143261 74692266 74692998 67224985 67225717 NC_060933.1 CM039042.1 98.23 True local misassembly 74694528 74695091 67227222 67227785 NC_060933.1 CM039042.1 98.76 True indel: indel (> 5bp) 74695112 74695625 67227786 67228299 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = 3234818 71455137 71459874 67233511 67228719 NC_060933.1 CM039042.1 96.19 True relocation, inconsistency = 6260435 65188001 65193974 67240252 67234239 NC_060933.1 CM039042.1 96.8 True fake: not a misassembly (possible transposable element) 53542536 53543117 67241608 67241027 NC_060933.1 CM039042.1 99.14 True fake: not a misassembly (possible transposable element) 65185222 65185813 67243039 67242448 NC_060933.1 CM039042.1 98.82 True local misassembly 65184307 65184810 67244049 67243546 NC_060933.1 CM039042.1 97.22 True relocation, inconsistency = 11644872 53537073 53537657 67246411 67245827 NC_060933.1 CM039042.1 99.32 True relocation, inconsistency = -17879377 71413764 71415078 67249097 67247783 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = 5029468 66383232 66383801 67249592 67250161 NC_060933.1 CM039042.1 99.82 True relocation, inconsistency = -6168183 60227456 60228659 67261999 67263202 NC_060933.1 CM039042.1 98.26 True relocation, inconsistency = 12503351 72734796 72737267 67268459 67265988 NC_060933.1 CM039042.1 95.94 True relocation, inconsistency = 12489621 60241461 60244791 67268463 67271828 NC_060933.1 CM039042.1 96.03 True relocation, inconsistency = 4868773 65113565 65117437 67275780 67271829 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = 11877446 53234562 53235273 67276626 67277337 NC_060933.1 CM039042.1 98.74 True relocation, inconsistency = 22755959 75996722 75997325 67282827 67283430 NC_060933.1 CM039042.1 99.67 True relocation, inconsistency = -20288622 55708793 55732967 67283520 67307658 NC_060933.1 CM039042.1 96.08 True relocation, inconsistency = 6638848 62371816 62372885 67308728 67307659 NC_060933.1 CM039042.1 99.51 True indel: indel (> 5bp) 62371113 62371815 67309441 67308739 NC_060933.1 CM039042.1 99.15 True relocation, inconsistency = 11141323 73513509 73515560 67309812 67311853 NC_060933.1 CM039042.1 99.27 True local misassembly 73510031 73515674 67312058 67317711 NC_060933.1 CM039042.1 99.19 True local misassembly 73513663 73515465 67318981 67320768 NC_060933.1 CM039042.1 97.63 True fake: not a misassembly (possible transposable element) 61739735 61740453 67321487 67320769 NC_060933.1 CM039042.1 99.2 True fake: not a misassembly (possible transposable element) 73513663 73515674 67322277 67324293 NC_060933.1 CM039042.1 98.08 True relocation, inconsistency = -1908321 71608788 71610405 67325728 67327340 NC_060933.1 CM039042.1 95.73 True relocation, inconsistency = 1892265 73504230 73509438 67328900 67333998 NC_060933.1 CM039042.1 95.75 True relocation, inconsistency = 24021341 49476133 49476883 67340774 67340004 NC_060933.1 CM039042.1 95.72 True relocation, inconsistency = 23998053 73475086 73495024 67340924 67361590 NC_060933.1 CM039042.1 95.93 True relocation, inconsistency = 9805792 63664107 63665128 67366777 67365756 NC_060933.1 CM039042.1 96.61 True relocation, inconsistency = 9843128 73509363 73512468 67367884 67371084 NC_060933.1 CM039042.1 95.72 True relocation, inconsistency = -9839 73502630 73515560 67371085 67383962 NC_060933.1 CM039042.1 98.94 True fake: not a misassembly (possible transposable element) 53019855 53020468 67384576 67383963 NC_060933.1 CM039042.1 99.19 True fake: not a misassembly (possible transposable element) 73513663 73515465 67385356 67387148 NC_060933.1 CM039042.1 97.9 True fake: not a misassembly (possible transposable element) 61739735 61740453 67387867 67387149 NC_060933.1 CM039042.1 99.07 True fake: not a misassembly (possible transposable element) 73513663 73515674 67388657 67390673 NC_060933.1 CM039042.1 98.08 True relocation, inconsistency = -1908316 71608788 71610405 67392103 67393720 NC_060933.1 CM039042.1 95.44 True relocation, inconsistency = 1892270 73504230 73509438 67395275 67400428 NC_060933.1 CM039042.1 96.44 True fake: not a misassembly (possible transposable element) 70336570 70337230 67408520 67409180 NC_060933.1 CM039042.1 98.49 True fake: not a misassembly (possible transposable element) 73515427 73538320 67411464 67434117 NC_060933.1 CM039042.1 97.44 True local misassembly 73531954 73532953 67434673 67435672 NC_060933.1 CM039042.1 99.8 True indel: indel (<= 5bp) 73532954 73533497 67435678 67436221 NC_060933.1 CM039042.1 99.63 True local misassembly 73534092 73534825 67436786 67437519 NC_060933.1 CM039042.1 99.73 True local misassembly 73536909 73537792 67439608 67440491 NC_060933.1 CM039042.1 99.89 True indel: indel (<= 5bp) 73537798 73538394 67440492 67441088 NC_060933.1 CM039042.1 100.0 True local misassembly 73539041 73539828 67441820 67442607 NC_060933.1 CM039042.1 99.49 True indel: indel (<= 5bp) 73539829 73541608 67442613 67444392 NC_060933.1 CM039042.1 99.89 True local misassembly 73544153 73546627 67446197 67448671 NC_060933.1 CM039042.1 99.84 True local misassembly 73547189 73547871 67449228 67449910 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 73547902 73548721 67449911 67450730 NC_060933.1 CM039042.1 99.63 True indel: indel (> 5bp) 73549069 73549835 67451068 67451834 NC_060933.1 CM039042.1 99.87 True indel: indel (<= 5bp) 73549836 73550830 67451840 67452834 NC_060933.1 CM039042.1 99.9 True indel: stretch of mismatches 73551225 73551934 67453229 67453938 NC_060933.1 CM039042.1 99.86 True indel: stretch of mismatches 73552353 73553137 67454357 67455141 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73553138 73553771 67455147 67455780 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 73553777 73554728 67455781 67456732 NC_060933.1 CM039042.1 99.58 True indel: stretch of mismatches 73554847 73556480 67456851 67458484 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 73556675 73558039 67458689 67460053 NC_060933.1 CM039042.1 99.71 True indel: indel (> 5bp) 73558040 73558979 67460064 67461003 NC_060933.1 CM039042.1 99.79 True indel: indel (> 5bp) 73559000 73561590 67461004 67463594 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 73561982 73563982 67463996 67465996 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 73564194 73569084 67466228 67471118 NC_060933.1 CM039042.1 99.87 True local misassembly 73564803 73585662 67471119 67492078 NC_060933.1 CM039042.1 98.78 True fake: not a misassembly (possible transposable element) 73576294 73580085 67492079 67495870 NC_060933.1 CM039042.1 99.94 True fake: not a misassembly (possible transposable element) 73589227 73613242 67495871 67519712 NC_060933.1 CM039042.1 98.53 True local misassembly 73612398 73637005 67519713 67544471 NC_060933.1 CM039042.1 96.61 True local misassembly 73639799 73640723 67544472 67545396 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 73640724 73641437 67545402 67546115 NC_060933.1 CM039042.1 100.0 True local misassembly 73639984 73650455 67546740 67556907 NC_060933.1 CM039042.1 96.52 True relocation, inconsistency = -7575 73643042 73663002 67557069 67576909 NC_060933.1 CM039042.1 98.73 True local misassembly 73667536 73702961 67576910 67611536 NC_060933.1 CM039042.1 96.54 True relocation, inconsistency = 395870 74098832 74100850 67611537 67613540 NC_060933.1 CM039042.1 98.02 True local misassembly 74105311 74111512 67613541 67619672 NC_060933.1 CM039042.1 98.6 True local misassembly 74112337 74116857 67619708 67624223 NC_060933.1 CM039042.1 98.59 True relocation, inconsistency = 2717486 71392825 71394850 67626244 67624224 NC_060933.1 CM039042.1 97.13 True relocation, inconsistency = -41019 71430204 71433752 67629809 67626336 NC_060933.1 CM039042.1 95.78 True local misassembly 71425553 71426374 67630651 67629830 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = 36814 71384947 71387030 67634473 67632360 NC_060933.1 CM039042.1 97.45 True relocation, inconsistency = 2734115 74121893 74130005 67635221 67643353 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 304440 74436933 74437796 67646704 67645841 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = -33565 74467805 74468330 67649397 67648872 NC_060933.1 CM039042.1 99.43 True local misassembly 74466841 74470238 67653659 67650227 NC_060933.1 CM039042.1 95.91 True relocation, inconsistency = 9837864 64628319 64628976 67654342 67653660 NC_060933.1 CM039042.1 95.53 True relocation, inconsistency = 9501003 74129980 74184002 67654343 67708965 NC_060933.1 CM039042.1 98.09 True local misassembly 74182555 74188216 67708966 67714652 NC_060933.1 CM039042.1 99.38 True local misassembly 74186570 74208002 67715113 67736490 NC_060933.1 CM039042.1 99.01 True local misassembly 74203681 74233847 67736491 67766592 NC_060933.1 CM039042.1 99.11 True relocation, inconsistency = 75075 74309105 74309690 67766775 67767360 NC_060933.1 CM039042.1 99.49 True indel: indel (> 5bp) 74310007 74310950 67767637 67768580 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 74311108 74312631 67768748 67770271 NC_060933.1 CM039042.1 99.8 True indel: indel (> 5bp) 74312632 74314352 67770282 67772002 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 74314478 74315407 67772138 67773067 NC_060933.1 CM039042.1 99.89 True local misassembly 74317561 74318726 67775176 67776341 NC_060933.1 CM039042.1 100.0 True local misassembly 74319274 74319964 67777674 67778364 NC_060933.1 CM039042.1 99.13 True indel: indel (> 5bp) 74320234 74321167 67778644 67779577 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 74321168 74321828 67779588 67780248 NC_060933.1 CM039042.1 99.85 True indel: indel (> 5bp) 74322211 74323456 67780646 67781891 NC_060933.1 CM039042.1 99.84 True indel: indel (> 5bp) 74323701 74324549 67782126 67782974 NC_060933.1 CM039042.1 99.88 True indel: indel (> 5bp) 74324805 74327726 67783245 67786166 NC_060933.1 CM039042.1 99.93 True local misassembly 74338298 74342797 67790086 67794580 NC_060933.1 CM039042.1 98.96 True local misassembly 74343837 74361202 67794581 67812375 NC_060933.1 CM039042.1 96.0 True relocation, inconsistency = -10935 74350268 74352105 67812376 67814213 NC_060933.1 CM039042.1 97.26 True relocation, inconsistency = 43140 74395471 74395990 67814439 67814958 NC_060933.1 CM039042.1 99.46 True local misassembly 74399220 74406092 67814959 67821791 NC_060933.1 CM039042.1 99.19 True fake: not a misassembly (possible transposable element) 70152460 70153118 67823248 67822600 NC_060933.1 CM039042.1 96.23 True fake: not a misassembly (possible transposable element) 74406646 74416157 67823665 67833216 NC_060933.1 CM039042.1 99.15 True fake: not a misassembly (possible transposable element) 74498690 74499743 67833550 67834603 NC_060933.1 CM039042.1 98.67 True fake: not a misassembly (possible transposable element) 74416483 74425445 67834706 67843852 NC_060933.1 CM039042.1 95.98 True fake: not a misassembly (possible transposable element) 74464685 74470312 67843853 67849470 NC_060933.1 CM039042.1 99.47 True fake: not a misassembly (possible transposable element) 74432343 74444557 67849471 67862030 NC_060933.1 CM039042.1 95.47 True local misassembly 74441521 74444557 67862634 67865660 NC_060933.1 CM039042.1 98.82 True relocation, inconsistency = 5762222 68676559 68678695 67868435 67866264 NC_060933.1 CM039042.1 96.8 True relocation, inconsistency = 5798709 74477405 74512440 67868436 67903511 NC_060933.1 CM039042.1 99.24 True local misassembly 74513181 74518813 67903512 67909159 NC_060933.1 CM039042.1 99.31 True local misassembly 74519368 74538306 67909160 67928351 NC_060933.1 CM039042.1 95.44 True relocation, inconsistency = 7404 74545711 74546652 67928352 67929478 NC_060933.1 CM039042.1 96.27 True local misassembly 74549596 74567794 67929781 67948145 NC_060933.1 CM039042.1 97.9 True relocation, inconsistency = 13536 74581331 74586981 67948146 67953781 NC_060933.1 CM039042.1 99.34 True local misassembly 74583803 74600996 67953782 67970956 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 13458690 61124369 61125086 67971700 67970983 NC_060933.1 CM039042.1 98.75 True indel: indel (<= 5bp) 61123102 61124368 67972972 67971706 NC_060933.1 CM039042.1 98.82 True local misassembly 61120878 61121452 67975047 67974473 NC_060933.1 CM039042.1 99.13 True local misassembly 61125280 61125799 67975946 67975427 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 61124238 61125086 67976983 67976135 NC_060933.1 CM039042.1 99.41 True indel: indel (<= 5bp) 61123618 61124232 67977598 67976984 NC_060933.1 CM039042.1 99.51 True indel: stretch of mismatches 61122920 61123447 67978296 67977769 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = 8737791 52382712 52383632 67980713 67979793 NC_060933.1 CM039042.1 98.81 True local misassembly 52380137 52380716 67983134 67982555 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = -8746042 61125280 61125799 67984033 67983514 NC_060933.1 CM039042.1 99.62 True indel: indel (<= 5bp) 61124238 61125034 67985070 67984274 NC_060933.1 CM039042.1 99.12 True indel: indel (<= 5bp) 61123618 61124232 67985685 67985071 NC_060933.1 CM039042.1 99.51 True local misassembly 61121892 61122667 67987391 67986616 NC_060933.1 CM039042.1 98.84 True relocation, inconsistency = 8737791 52382712 52383633 67988780 67987859 NC_060933.1 CM039042.1 98.81 True indel: indel (<= 5bp) 52381970 52382711 67989527 67988786 NC_060933.1 CM039042.1 99.06 True local misassembly 52380137 52380716 67991196 67990617 NC_060933.1 CM039042.1 98.97 True relocation, inconsistency = -8746037 61120343 61125951 67997023 67991419 NC_060933.1 CM039042.1 97.58 True relocation, inconsistency = 8738202 52377999 52382005 68001171 67997159 NC_060933.1 CM039042.1 96.94 True local misassembly 52379683 52380394 68001883 68001172 NC_060933.1 CM039042.1 96.98 True relocation, inconsistency = 22220526 74600921 74615979 68001884 68016946 NC_060933.1 CM039042.1 99.3 True local misassembly 74612710 74633334 68016947 68037237 NC_060933.1 CM039042.1 97.57 True local misassembly 74640235 74691622 68037377 68088271 NC_060933.1 CM039042.1 98.08 True local misassembly 74694100 74712617 68088285 68106187 NC_060933.1 CM039042.1 96.1 True local misassembly 74711243 74720591 68106206 68115559 NC_060933.1 CM039042.1 99.24 True fake: not a misassembly (possible transposable element) 74734012 74735117 68115560 68116670 NC_060933.1 CM039042.1 98.52 True fake: not a misassembly (possible transposable element) 74720544 74737342 68116671 68133434 NC_060933.1 CM039042.1 98.79 True relocation, inconsistency = 7565 74744908 74747832 68133435 68136335 NC_060933.1 CM039042.1 99.05 True local misassembly 74745326 74751894 68136336 68142924 NC_060933.1 CM039042.1 99.0 True local misassembly 74748380 74748975 68143059 68143659 NC_060933.1 CM039042.1 99.21 True local misassembly 74750703 74751424 68143660 68144386 NC_060933.1 CM039042.1 98.81 True relocation, inconsistency = -10338 74741087 74751894 68144387 68155185 NC_060933.1 CM039042.1 98.66 True local misassembly 74748380 74749009 68155320 68155949 NC_060933.1 CM039042.1 100.0 True local misassembly 74751102 74751725 68156145 68156768 NC_060933.1 CM039042.1 100.0 True local misassembly 74752816 74755183 68157934 68160301 NC_060933.1 CM039042.1 99.96 True local misassembly 74756817 74757560 68160659 68161402 NC_060933.1 CM039042.1 100.0 True local misassembly 74758241 74759423 68162068 68163250 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74759429 74760630 68163251 68164452 NC_060933.1 CM039042.1 99.92 True local misassembly 74761191 74762761 68165028 68166598 NC_060933.1 CM039042.1 99.87 True indel: stretch of mismatches 74762935 74764320 68166772 68168157 NC_060933.1 CM039042.1 99.93 True indel: indel (<= 5bp) 74764326 74765388 68168158 68169220 NC_060933.1 CM039042.1 99.91 True local misassembly 74765628 74766715 68169221 68170308 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 74766716 74767464 68170314 68171062 NC_060933.1 CM039042.1 99.73 True indel: indel (> 5bp) 74767465 74768686 68171113 68172334 NC_060933.1 CM039042.1 99.92 True indel: indel (<= 5bp) 74769010 74770674 68172653 68174317 NC_060933.1 CM039042.1 99.82 True local misassembly 74771320 74774823 68174958 68178461 NC_060933.1 CM039042.1 99.91 True indel: indel (<= 5bp) 74775026 74779053 68178669 68182696 NC_060933.1 CM039042.1 99.9 True indel: indel (<= 5bp) 74779054 74779855 68182702 68183503 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 74780036 74780597 68183694 68184255 NC_060933.1 CM039042.1 100.0 True indel: indel (<= 5bp) 74780598 74781922 68184261 68185585 NC_060933.1 CM039042.1 99.77 True local misassembly 74783381 74792460 68189194 68198393 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = 55218 74847679 74873444 68198394 68224458 NC_060933.1 CM039042.1 98.36 True fake: not a misassembly (possible transposable element) 74892267 74893076 68224459 68225268 NC_060933.1 CM039042.1 98.83 True fake: not a misassembly (possible transposable element) 74873700 74881147 68225269 68232691 NC_060933.1 CM039042.1 99.24 True relocation, inconsistency = -412944 74468204 74470248 68232692 68234771 NC_060933.1 CM039042.1 95.9 True relocation, inconsistency = 450239 74921800 74938163 68236084 68252452 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 25749 74963913 75014433 68252453 68303113 NC_060933.1 CM039042.1 98.92 True local misassembly 75016378 75042957 68303114 68329948 NC_060933.1 CM039042.1 98.5 True relocation, inconsistency = 10549 75053608 75056643 68330050 68333070 NC_060933.1 CM039042.1 95.27 True relocation, inconsistency = -23910592 51147421 51149114 68334440 68336138 NC_060933.1 CM039042.1 97.02 True relocation, inconsistency = 6114096 57265752 57266353 68338680 68339281 NC_060933.1 CM039042.1 98.84 True relocation, inconsistency = 17776500 75042916 75051562 68339344 68347980 NC_060933.1 CM039042.1 99.41 True relocation, inconsistency = -10548242 64505649 64506270 68350309 68350930 NC_060933.1 CM039042.1 98.55 True local misassembly 64507508 64508133 68352233 68352858 NC_060933.1 CM039042.1 98.72 True indel: indel (<= 5bp) 64508139 64509020 68352859 68353740 NC_060933.1 CM039042.1 98.98 True relocation, inconsistency = 10370963 74882283 74883024 68356781 68356040 NC_060933.1 CM039042.1 97.71 True relocation, inconsistency = 168033 75051508 75055049 68357232 68360773 NC_060933.1 CM039042.1 99.77 True relocation, inconsistency = 15404 75070454 75071806 68360774 68362126 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 19079 75090937 75103906 68362178 68375172 NC_060933.1 CM039042.1 99.25 True relocation, inconsistency = 11205 75115112 75136322 68375173 68395415 NC_060933.1 CM039042.1 95.27 True relocation, inconsistency = 20312 75156635 75182923 68395416 68421559 NC_060933.1 CM039042.1 98.85 True local misassembly 75183083 75186515 68423909 68427321 NC_060933.1 CM039042.1 99.01 True local misassembly 75182879 75224919 68428142 68470211 NC_060933.1 CM039042.1 98.32 True local misassembly 75225553 75271761 68470212 68516170 NC_060933.1 CM039042.1 98.96 True relocation, inconsistency = 7209 75279407 75280798 68516607 68517998 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 75281237 75281745 68518447 68518955 NC_060933.1 CM039042.1 99.61 True indel: indel (<= 5bp) 75281746 75282615 68518961 68519830 NC_060933.1 CM039042.1 99.89 True indel: indel (> 5bp) 75282838 75284674 68520063 68521899 NC_060933.1 CM039042.1 99.95 True indel: indel (> 5bp) 75284760 75286217 68521995 68523452 NC_060933.1 CM039042.1 99.93 True indel: indel (> 5bp) 75286473 75288684 68523718 68525929 NC_060933.1 CM039042.1 99.82 True local misassembly 75289909 75290440 68527163 68527694 NC_060933.1 CM039042.1 100.0 True local misassembly 75296795 75297853 68528255 68529313 NC_060933.1 CM039042.1 99.91 True local misassembly 75299256 75301213 68529952 68531909 NC_060933.1 CM039042.1 99.9 True relocation, inconsistency = 10508 75312460 75326705 68532648 68546863 NC_060933.1 CM039042.1 98.94 True local misassembly 75323981 75332395 68546864 68555273 NC_060933.1 CM039042.1 98.42 True relocation, inconsistency = -17014 75315382 75326686 68555274 68566538 NC_060933.1 CM039042.1 98.87 True local misassembly 75323962 75336657 68566539 68579179 NC_060933.1 CM039042.1 98.74 True relocation, inconsistency = 11176 75347834 75387574 68579180 68618966 NC_060933.1 CM039042.1 98.95 True local misassembly 75387000 75387543 68620663 68621206 NC_060933.1 CM039042.1 99.45 True local misassembly 75388013 75389046 68622030 68623063 NC_060933.1 CM039042.1 99.9 True local misassembly 75385813 75411477 68623064 68648862 NC_060933.1 CM039042.1 96.83 True local misassembly 75413445 75434793 68648863 68669831 NC_060933.1 CM039042.1 97.43 True local misassembly 75437083 75470419 68669832 68703053 NC_060933.1 CM039042.1 98.45 True relocation, inconsistency = -4387039 71083496 71084118 68703169 68703791 NC_060933.1 CM039042.1 99.36 True local misassembly 71087792 71088355 68707311 68707874 NC_060933.1 CM039042.1 98.58 True relocation, inconsistency = -10644146 60446439 60447039 68710104 68710704 NC_060933.1 CM039042.1 98.5 True indel: indel (> 5bp) 60447286 60448273 68711016 68712003 NC_060933.1 CM039042.1 98.48 True local misassembly 60453691 60454392 68717525 68718226 NC_060933.1 CM039042.1 100.0 True relocation, inconsistency = 461165 59990086 59990869 68720666 68719883 NC_060933.1 CM039042.1 98.47 True local misassembly 59987829 59988613 68722909 68722125 NC_060933.1 CM039042.1 99.36 True local misassembly 59985169 59985680 68725509 68724998 NC_060933.1 CM039042.1 98.83 True relocation, inconsistency = -15529425 75508959 75514435 68731069 68725668 NC_060933.1 CM039042.1 95.06 True relocation, inconsistency = 10787090 64718354 64720385 68734569 68732553 NC_060933.1 CM039042.1 95.39 True fake: not a misassembly (possible transposable element) 71323479 71325327 68735357 68737260 NC_060933.1 CM039042.1 95.08 True fake: not a misassembly (possible transposable element) 64712616 64715347 68740512 68737811 NC_060933.1 CM039042.1 96.94 True relocation, inconsistency = 6613180 71330988 71331640 68742973 68743625 NC_060933.1 CM039042.1 98.93 True relocation, inconsistency = -6777617 64560017 64560724 68749619 68750326 NC_060933.1 CM039042.1 98.59 True indel: indel (> 5bp) 64561210 64561986 68750822 68751598 NC_060933.1 CM039042.1 98.33 True fake: not a misassembly (possible transposable element) 54897397 54898223 68753610 68754427 NC_060933.1 CM039042.1 97.83 True fake: not a misassembly (possible transposable element) 64560017 64560656 68755987 68756626 NC_060933.1 CM039042.1 98.75 True local misassembly 64561210 64561843 68757185 68757818 NC_060933.1 CM039042.1 98.11 True relocation, inconsistency = -11125128 53436850 53437535 68757953 68758638 NC_060933.1 CM039042.1 98.69 True relocation, inconsistency = 6944322 60383324 60384380 68760105 68761156 NC_060933.1 CM039042.1 96.78 True relocation, inconsistency = 4014554 64398935 64401620 68761157 68763812 NC_060933.1 CM039042.1 96.85 True relocation, inconsistency = 7856849 72258855 72259435 68764778 68764198 NC_060933.1 CM039042.1 99.31 True relocation, inconsistency = -695415 72940867 72945903 68778171 68773145 NC_060933.1 CM039042.1 97.5 True relocation, inconsistency = 10730544 62208934 62209562 68779560 68778932 NC_060933.1 CM039042.1 98.89 True local misassembly 62207131 62207801 68781353 68780683 NC_060933.1 CM039042.1 99.4 True local misassembly 62206046 62206556 68782443 68781933 NC_060933.1 CM039042.1 99.02 True relocation, inconsistency = 13258948 75470328 75472727 68787267 68789676 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 38720 75511448 75538632 68789677 68817240 NC_060933.1 CM039042.1 97.97 True local misassembly 75542584 75633852 68817241 68908378 NC_060933.1 CM039042.1 98.94 True relocation, inconsistency = 30590 75664443 75670294 68908379 68914399 NC_060933.1 CM039042.1 97.11 True relocation, inconsistency = -36423 75633872 75649475 68914400 68930028 NC_060933.1 CM039042.1 99.04 True local misassembly 75644066 75645340 68930029 68931293 NC_060933.1 CM039042.1 98.27 True relocation, inconsistency = 6917688 68725823 68726365 68931848 68931306 NC_060933.1 CM039042.1 98.71 True relocation, inconsistency = 14941881 53778764 53779592 68931953 68932776 NC_060933.1 CM039042.1 97.28 True relocation, inconsistency = 21869233 75648826 75678825 68932777 68962422 NC_060933.1 CM039042.1 97.62 True relocation, inconsistency = -35324 75643506 75649475 68962427 68968381 NC_060933.1 CM039042.1 98.3 True local misassembly 75650233 75652717 68968939 68971438 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = -9288865 66363853 66369983 68971439 68977723 NC_060933.1 CM039042.1 95.12 True local misassembly 66365158 66365732 68977833 68978407 NC_060933.1 CM039042.1 98.43 True fake: not a misassembly (possible transposable element) 75648646 75653513 68979026 68983938 NC_060933.1 CM039042.1 98.19 True fake: not a misassembly (possible transposable element) 66364629 66365157 68983939 68984467 NC_060933.1 CM039042.1 99.08 True indel: indel (<= 5bp) 66365158 66365732 68984473 68985047 NC_060933.1 CM039042.1 98.43 True relocation, inconsistency = 9282310 75648646 75652717 68985651 68989762 NC_060933.1 CM039042.1 97.69 True relocation, inconsistency = 23649 75676367 75704766 68989763 69018147 NC_060933.1 CM039042.1 98.55 True local misassembly 75704540 75720112 69019009 69034586 NC_060933.1 CM039042.1 98.78 True local misassembly 75714960 75727544 69034587 69047251 NC_060933.1 CM039042.1 98.47 True local misassembly 75730212 75742854 69048855 69061477 NC_060933.1 CM039042.1 99.57 True relocation, inconsistency = -10809 75732046 75732947 69061478 69062353 NC_060933.1 CM039042.1 95.58 True relocation, inconsistency = 26390 75759342 75764805 69062358 69067836 NC_060933.1 CM039042.1 99.4 True local misassembly 75762176 75762899 69067837 69068560 NC_060933.1 CM039042.1 99.73 True indel: indel (<= 5bp) 75762900 75763846 69068566 69069512 NC_060933.1 CM039042.1 99.89 True local misassembly 75764588 75765230 69070259 69070901 NC_060933.1 CM039042.1 100.0 True local misassembly 75765286 75766423 69071127 69072264 NC_060933.1 CM039042.1 99.82 True local misassembly 75766424 75767359 69073068 69074003 NC_060933.1 CM039042.1 100.0 True indel: indel (> 5bp) 75767375 75768067 69074004 69074696 NC_060933.1 CM039042.1 99.86 True local misassembly 75770409 75775459 69077383 69082418 NC_060933.1 CM039042.1 99.05 True relocation, inconsistency = 7299 75782759 75794454 69082419 69094108 NC_060933.1 CM039042.1 99.61 True local misassembly 75794432 75814636 69096318 69116542 NC_060933.1 CM039042.1 99.06 True local misassembly 75814598 75817342 69117438 69120182 NC_060933.1 CM039042.1 99.89 True local misassembly 75821318 75832664 69120351 69131733 NC_060933.1 CM039042.1 99.15 True fake: not a misassembly (possible transposable element) 58559984 58562196 69132757 69134988 NC_060933.1 CM039042.1 95.39 True fake: not a misassembly (possible transposable element) 75832610 75857887 69135785 69161037 NC_060933.1 CM039042.1 98.66 True local misassembly 75859897 75868827 69161038 69169928 NC_060933.1 CM039042.1 98.98 True relocation, inconsistency = -58555 75810273 75810825 69169929 69170471 NC_060933.1 CM039042.1 98.43 True relocation, inconsistency = 74184 75885010 75913629 69170472 69198947 NC_060933.1 CM039042.1 98.67 True local misassembly 75918237 75933119 69198948 69213675 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = -8824 75924296 75962107 69213676 69251542 NC_060933.1 CM039042.1 97.79 True local misassembly 75958389 75960457 69251543 69253606 NC_060933.1 CM039042.1 98.67 True local misassembly 75962095 75979293 69253607 69270800 NC_060933.1 CM039042.1 99.38 True local misassembly 75974767 75982891 69270801 69278945 NC_060933.1 CM039042.1 99.4 True relocation, inconsistency = 11257799 64715528 64716081 69280385 69279832 NC_060933.1 CM039042.1 98.01 True indel: indel (<= 5bp) 64714789 64715321 69281129 69280597 NC_060933.1 CM039042.1 97.94 True relocation, inconsistency = 11112441 75832972 75836987 69286339 69290449 NC_060933.1 CM039042.1 96.12 True relocation, inconsistency = 3083670 72745858 72748704 69293882 69291047 NC_060933.1 CM039042.1 97.25 True relocation, inconsistency = 11461 72731257 72731756 69297022 69296523 NC_060933.1 CM039042.1 99.0 True indel: indel (<= 5bp) 72730732 72731251 69297542 69297023 NC_060933.1 CM039042.1 98.85 True indel: indel (> 5bp) 72730213 72730731 69298071 69297553 NC_060933.1 CM039042.1 99.61 True local misassembly 72727084 72727801 69300935 69300218 NC_060933.1 CM039042.1 99.58 True indel: indel (<= 5bp) 72726469 72727078 69301545 69300936 NC_060933.1 CM039042.1 98.85 True local misassembly 72725138 72725761 69302881 69302258 NC_060933.1 CM039042.1 99.36 True relocation, inconsistency = 3265195 75992959 76010677 69304884 69322642 NC_060933.1 CM039042.1 98.89 True indel: indel (> 5bp) 76010845 76014601 69322775 69326537 NC_060933.1 CM039042.1 99.17 True relocation, inconsistency = 11755 76026357 76038757 69326538 69338918 NC_060933.1 CM039042.1 99.25 True local misassembly 76034283 76034886 69339455 69340058 NC_060933.1 CM039042.1 99.34 True fake: not a misassembly (possible transposable element) 75660300 75661246 69340059 69341005 NC_060933.1 CM039042.1 98.73 True fake: not a misassembly (possible transposable element) 76035703 76036726 69341085 69342108 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -374427 75663712 75664392 69343521 69344201 NC_060933.1 CM039042.1 99.12 True local misassembly 75667073 75667714 69346911 69347552 NC_060933.1 CM039042.1 98.13 True indel: indel (> 5bp) 75668036 75668872 69347918 69348769 NC_060933.1 CM039042.1 97.61 True relocation, inconsistency = 359612 76028485 76038757 69348770 69359097 NC_060933.1 CM039042.1 98.81 True local misassembly 76034283 76034886 69359629 69360232 NC_060933.1 CM039042.1 99.34 True fake: not a misassembly (possible transposable element) 75660300 75661246 69360233 69361179 NC_060933.1 CM039042.1 98.73 True fake: not a misassembly (possible transposable element) 76035703 76036726 69361259 69362282 NC_060933.1 CM039042.1 99.51 True relocation, inconsistency = -374427 75663712 75664392 69363695 69364375 NC_060933.1 CM039042.1 99.12 True local misassembly 75666216 75666777 69366233 69366794 NC_060933.1 CM039042.1 99.64 True indel: indel (> 5bp) 75666778 75667714 69366810 69367746 NC_060933.1 CM039042.1 98.51 True local misassembly 75668300 75669305 69368381 69369386 NC_060933.1 CM039042.1 99.4 True local misassembly 75669962 75671804 69369783 69371625 NC_060933.1 CM039042.1 99.35 True local misassembly 75668554 75669305 69372772 69373523 NC_060933.1 CM039042.1 99.47 True local misassembly 75669894 75671804 69373847 69375757 NC_060933.1 CM039042.1 99.32 True indel: indel (<= 5bp) 75671810 75672392 69375758 69376340 NC_060933.1 CM039042.1 99.14 True indel: indel (> 5bp) 75672573 75673146 69376506 69377079 NC_060933.1 CM039042.1 99.3 True indel: indel (<= 5bp) 75673152 75674043 69377080 69377971 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -49491 75625766 75627491 69379185 69380885 NC_060933.1 CM039042.1 97.57 True relocation, inconsistency = -7845405 67782642 67789627 69381441 69388346 NC_060933.1 CM039042.1 95.55 True relocation, inconsistency = 8323571 76113199 76116781 69388347 69391919 NC_060933.1 CM039042.1 99.58 True relocation, inconsistency = -50823 76065959 76097639 69391920 69423670 NC_060933.1 CM039042.1 99.41 True local misassembly 76100410 76113279 69423671 69436550 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = 54715 76168621 76197530 69437177 69466091 NC_060933.1 CM039042.1 99.12 True local misassembly 76196243 76215631 69466092 69485415 NC_060933.1 CM039042.1 98.31 True relocation, inconsistency = -19609 76196023 76197958 69485416 69487351 NC_060933.1 CM039042.1 99.5 True local misassembly 76195653 76197958 69487352 69489652 NC_060933.1 CM039042.1 99.29 True local misassembly 76195653 76197958 69489653 69491958 NC_060933.1 CM039042.1 99.54 True local misassembly 76195653 76220843 69491959 69517085 NC_060933.1 CM039042.1 98.46 True relocation, inconsistency = 19120 76240112 76246628 69517234 69523785 NC_060933.1 CM039042.1 99.04 True relocation, inconsistency = 226898 76473527 76481421 69523786 69531680 NC_060933.1 CM039042.1 99.53 True relocation, inconsistency = -30669 76450753 76481466 69531681 69562394 NC_060933.1 CM039042.1 99.5 True local misassembly 76486783 76514051 69562395 69589549 NC_060933.1 CM039042.1 98.9 True relocation, inconsistency = -7132838 69381359 69381951 69589695 69590287 NC_060933.1 CM039042.1 98.65 True relocation, inconsistency = 7143885 76527035 77565008 69591486 70629889 NC_060933.1 CM039042.1 99.87 True local misassembly 77561630 81448381 70629890 74521566 NC_060933.1 CM039042.1 99.68 True local misassembly 81448206 82575891 74522551 75650201 NC_060933.1 CM039042.1 99.84 True local misassembly 82576019 85274845 75650435 78349356 NC_060933.1 CM039042.1 99.79 True local misassembly 85275506 87918952 78349806 80989292 NC_060933.1 CM039042.1 99.69 True local misassembly 87921209 90840174 80989355 83909386 NC_060933.1 CM039042.1 99.76 True indel: indel (> 5bp) 90840324 92811212 83909509 85883669 NC_060933.1 CM039042.1 99.64 True fake: not a misassembly (possible transposable element) 15680887 15684700 85888294 85884486 NC_060931.1 CM039042.1 96.41 True fake: not a misassembly (possible transposable element) 92812274 95629371 85888791 88705088 NC_060933.1 CM039042.1 99.71 True local misassembly 95629528 95997753 88705370 89073581 NC_060933.1 CM039042.1 99.73 True indel: indel (> 5bp) 95997824 96079130 89073704 89155056 NC_060933.1 CM039042.1 99.82 True indel: stretch of mismatches 96079241 98594274 89155167 91669072 NC_060933.1 CM039042.1 99.83 True indel: indel (> 5bp) 98594437 98690896 91669316 91765780 NC_060933.1 CM039042.1 99.65 True local misassembly 98692286 100069534 91765872 93143044 NC_060933.1 CM039042.1 99.75 True local misassembly 100073007 100287982 93143045 93357962 NC_060933.1 CM039042.1 99.54 True local misassembly 100291451 100780518 93357963 93855697 NC_060933.1 CM039042.1 97.12 True local misassembly 100780744 100819331 93855698 93894191 NC_060933.1 CM039042.1 98.45 True local misassembly 100819786 103049940 93894695 96124937 NC_060933.1 CM039042.1 99.74 True local misassembly 103050037 106480916 96124938 99555797 NC_060933.1 CM039042.1 99.79 True local misassembly 106482158 108600542 99556400 101673882 NC_060933.1 CM039042.1 99.82 True local misassembly 108601053 110718686 101674469 103791917 NC_060933.1 CM039042.1 99.79 True local misassembly 110721308 111629416 103791918 104699987 NC_060933.1 CM039042.1 99.83 True indel: indel (<= 5bp) 111629454 112561378 104700024 105632062 NC_060933.1 CM039042.1 99.81 True indel: indel (> 5bp) 112561434 113666830 105632084 106746892 NC_060933.1 CM039042.1 98.95 True local misassembly 113670069 115793352 106748546 108876097 NC_060933.1 CM039042.1 99.61 True local misassembly 115793546 121571669 108876148 114659026 NC_060933.1 CM039042.1 99.77 True indel: stretch of mismatches 121571691 121693680 114659048 114780994 NC_060933.1 CM039042.1 99.76 True local misassembly 121693805 125267918 114781221 118355630 NC_060933.1 CM039042.1 99.74 True relocation, inconsistency = 21758 125289677 126527031 118355631 119592813 NC_060933.1 CM039042.1 99.83 True local misassembly 126521445 126523169 119594000 119595724 NC_060933.1 CM039042.1 98.67 True indel: indel (<= 5bp) 126523240 126523969 119595798 119596530 NC_060933.1 CM039042.1 96.04 True indel: stretch of mismatches 126524059 130598703 119596620 123670430 NC_060933.1 CM039042.1 99.75 True indel: indel (> 5bp) 130598741 133661565 123670454 126731497 NC_060933.1 CM039042.1 99.77 True local misassembly 133660650 134749355 126731498 127819765 NC_060933.1 CM039042.1 99.75 True indel: indel (<= 5bp) 134749390 140872845 127819804 133943437 NC_060933.1 CM039042.1 99.86 True local misassembly 140872803 143164455 133943622 136237371 NC_060933.1 CM039042.1 99.77 True local misassembly 143164655 143180092 136237796 136253191 NC_060933.1 CM039042.1 99.46 True local misassembly 143180001 143623895 136253197 136696910 NC_060933.1 CM039042.1 99.78 True local misassembly 143627301 145295935 136696911 138370066 NC_060933.1 CM039042.1 99.44 True relocation, inconsistency = -20534 145275402 145971170 138370067 139067549 NC_060933.1 CM039042.1 99.41 True local misassembly 145972282 146332128 139068480 139430920 NC_060933.1 CM039042.1 98.37 True local misassembly 146331374 146390721 139430921 139490311 NC_060933.1 CM039042.1 99.68 True local misassembly 146390996 146874835 139490760 139978878 NC_060933.1 CM039042.1 98.81 True local misassembly 146874915 147127467 139979209 140230863 NC_060933.1 CM039042.1 99.43 True indel: indel (> 5bp) 147127559 147674361 140230979 140773901 NC_060933.1 CM039042.1 98.5 True local misassembly 147674522 147777228 140774398 140877756 NC_060933.1 CM039042.1 99.17 True indel: indel (<= 5bp) 147777355 148758092 140877880 141860187 NC_060933.1 CM039042.1 99.51 True indel: indel (> 5bp) 148758401 149002327 141860519 142102601 NC_060933.1 CM039042.1 99.11 True local misassembly 149002450 149604882 142103038 142701548 NC_060933.1 CM039042.1 98.4 True local misassembly 149607712 149753494 142703191 142848595 NC_060933.1 CM039042.1 99.41 True local misassembly 149753917 150076986 142848682 143174779 NC_060933.1 CM039042.1 97.68 True local misassembly 150077330 150098989 143175962 143197659 NC_060933.1 CM039042.1 99.74 True local misassembly 150099871 150101508 143198938 143200575 NC_060933.1 CM039042.1 99.21 True local misassembly 150108472 150544280 143200777 143634241 NC_060933.1 CM039042.1 99.1 True translocation 3017 152701 143783634 143634242 NC_060943.1 CM039042.1 99.48 True translocation 269 840 143786563 143785992 NC_060926.1 CM039042.1 100.0 True translocation 99751366 99753195 143792357 143794234 NC_060939.1 CM039042.1 95.57 True translocation 61706585 61707325 143794235 143794966 NC_060943.1 CM039042.1 97.77 True local misassembly 61705517 61706951 143796055 143797469 NC_060943.1 CM039042.1 98.12 True CONTIG CM039042.1 143797991 misassembled 53889604 53902273 12665 1 NC_060933.1 JAKCWS010000072.1 99.03 True relocation, inconsistency = 1036392 52848904 52853152 16988 12725 NC_060933.1 JAKCWS010000072.1 96.81 True relocation, inconsistency = -8731965 61579226 61579945 18631 17912 NC_060933.1 JAKCWS010000072.1 99.17 True local misassembly 61577000 61577514 20827 20313 NC_060933.1 JAKCWS010000072.1 99.03 True local misassembly 61575679 61576507 22253 21425 NC_060933.1 JAKCWS010000072.1 99.16 True indel: indel (> 5bp) 61574860 61575419 23032 22473 NC_060933.1 JAKCWS010000072.1 99.29 True local misassembly 61573441 61574196 24376 23621 NC_060933.1 JAKCWS010000072.1 98.81 True local misassembly 61571832 61572380 25755 25207 NC_060933.1 JAKCWS010000072.1 98.54 True relocation, inconsistency = -1078751 62643231 62645250 33127 31088 NC_060933.1 JAKCWS010000072.1 97.46 True indel: indel (> 5bp) 62641472 62643098 34851 33235 NC_060933.1 JAKCWS010000072.1 95.63 True relocation, inconsistency = -9835051 72473652 72475165 37717 36209 NC_060933.1 JAKCWS010000072.1 97.18 True relocation, inconsistency = 2816128 75291614 75292198 38038 38622 NC_060933.1 JAKCWS010000072.1 98.8 True relocation, inconsistency = 20452434 54833558 54834709 44239 43093 NC_060933.1 JAKCWS010000072.1 98.01 True relocation, inconsistency = -7555476 62386832 62387601 46441 45672 NC_060933.1 JAKCWS010000072.1 97.79 True relocation, inconsistency = -3050526 65434469 65435055 49330 48744 NC_060933.1 JAKCWS010000072.1 98.47 True indel: indel (<= 5bp) 65433726 65434315 50078 49489 NC_060933.1 JAKCWS010000072.1 98.31 True relocation, inconsistency = 5340525 60091729 60092651 50628 51550 NC_060933.1 JAKCWS010000072.1 99.13 True relocation, inconsistency = 2572516 62665631 62666910 53298 52014 NC_060933.1 JAKCWS010000072.1 97.22 True local misassembly 62661419 62665346 57801 53814 NC_060933.1 JAKCWS010000072.1 96.07 True local misassembly 62663911 62664637 58890 58163 NC_060933.1 JAKCWS010000072.1 95.89 True relocation, inconsistency = 8762571 53897177 53901339 63008 58891 NC_060933.1 JAKCWS010000072.1 97.49 True local misassembly 53895701 53896383 63691 63009 NC_060933.1 JAKCWS010000072.1 96.56 True relocation, inconsistency = -7684087 61578689 61579750 64790 63729 NC_060933.1 JAKCWS010000072.1 99.34 True indel: indel (> 5bp) 61578096 61578650 65408 64854 NC_060933.1 JAKCWS010000072.1 99.1 True local misassembly 61576996 61577506 66498 65988 NC_060933.1 JAKCWS010000072.1 99.02 True local misassembly 61574859 61575404 68724 68179 NC_060933.1 JAKCWS010000072.1 98.17 True relocation, inconsistency = 7684961 53878079 53889613 80613 69009 NC_060933.1 JAKCWS010000072.1 98.59 True local misassembly 53874159 53880178 87110 81021 NC_060933.1 JAKCWS010000072.1 96.33 True relocation, inconsistency = -5211256 59083362 59085414 89158 87111 NC_060933.1 JAKCWS010000072.1 98.94 True relocation, inconsistency = 4798378 54244575 54284843 130101 89299 NC_060933.1 JAKCWS010000072.1 96.77 True relocation, inconsistency = -15448188 69689666 69692762 133158 130102 NC_060933.1 JAKCWS010000072.1 97.68 True relocation, inconsistency = 6643858 63024877 63045807 154089 133159 NC_060933.1 JAKCWS010000072.1 99.31 True relocation, inconsistency = 4838369 67884177 67897201 154090 167124 NC_060933.1 JAKCWS010000072.1 97.88 True relocation, inconsistency = 4868485 63012143 63015691 170673 167125 NC_060933.1 JAKCWS010000072.1 99.26 True local misassembly 62984985 63007543 193367 170674 NC_060933.1 JAKCWS010000072.1 98.49 True relocation, inconsistency = 4969330 67976874 67979619 193368 196083 NC_060933.1 JAKCWS010000072.1 97.04 True relocation, inconsistency = 3896323 71876896 71879883 197037 200054 NC_060933.1 JAKCWS010000072.1 96.05 True relocation, inconsistency = 1295673 73176634 73178618 203132 201132 NC_060933.1 JAKCWS010000072.1 95.35 True relocation, inconsistency = 15812857 57361921 57362474 204435 204988 NC_060933.1 JAKCWS010000072.1 99.64 True indel: indel (<= 5bp) 57362480 57363173 204989 205682 NC_060933.1 JAKCWS010000072.1 99.71 True indel: indel (> 5bp) 57363573 57364167 206092 206686 NC_060933.1 JAKCWS010000072.1 99.16 True relocation, inconsistency = -5169882 52194291 52195232 206692 207643 NC_060933.1 JAKCWS010000072.1 97.28 True relocation, inconsistency = 10774566 62977237 62985160 215572 207644 NC_060933.1 JAKCWS010000072.1 98.96 True local misassembly 62937897 62973712 251384 215573 NC_060933.1 JAKCWS010000072.1 98.29 True local misassembly 62935470 62936734 253545 252276 NC_060933.1 JAKCWS010000072.1 99.61 True local misassembly 62937897 62939072 254721 253546 NC_060933.1 JAKCWS010000072.1 99.75 True local misassembly 62921606 62936734 270622 255613 NC_060933.1 JAKCWS010000072.1 97.92 True relocation, inconsistency = 8802000 54118902 54119605 271316 270623 NC_060933.1 JAKCWS010000072.1 99.13 True relocation, inconsistency = 13953379 68072985 68078012 271317 276289 NC_060933.1 JAKCWS010000072.1 96.62 True relocation, inconsistency = -33046 68044967 68046539 276290 277857 NC_060933.1 JAKCWS010000072.1 97.54 True relocation, inconsistency = 13927226 54035565 54117740 359944 277858 NC_060933.1 JAKCWS010000072.1 98.78 True relocation, inconsistency = -8765811 62756985 62801375 404305 359945 NC_060933.1 JAKCWS010000072.1 99.21 True relocation, inconsistency = 5448967 68250452 68251143 404415 405106 NC_060933.1 JAKCWS010000072.1 100.0 True relocation, inconsistency = -10654622 57596696 57597422 405281 406007 NC_060933.1 JAKCWS010000072.1 99.72 True indel: indel (> 5bp) 57597423 57597996 406023 406596 NC_060933.1 JAKCWS010000072.1 99.48 True local misassembly 57598524 57599583 407454 408513 NC_060933.1 JAKCWS010000072.1 98.77 True local misassembly 57600107 57601862 409022 410777 NC_060933.1 JAKCWS010000072.1 99.6 True local misassembly 57602749 57603264 411694 412209 NC_060933.1 JAKCWS010000072.1 99.22 True local misassembly 57603076 57610632 414721 422267 NC_060933.1 JAKCWS010000072.1 96.19 True relocation, inconsistency = 3630928 53953357 53972147 441422 422268 NC_060933.1 JAKCWS010000072.1 97.25 True local misassembly 53946109 53950355 445798 441552 NC_060933.1 JAKCWS010000072.1 99.84 True indel: indel (<= 5bp) 53944837 53946108 447075 445804 NC_060933.1 JAKCWS010000072.1 99.76 True indel: indel (<= 5bp) 53943143 53944831 448764 447076 NC_060933.1 JAKCWS010000072.1 99.76 True relocation, inconsistency = -8780538 62686215 62714208 486205 458237 NC_060933.1 JAKCWS010000072.1 99.33 True relocation, inconsistency = 8769649 53909093 53916565 493683 486206 NC_060933.1 JAKCWS010000072.1 99.48 True local misassembly 53903467 53908463 498845 493684 NC_060933.1 JAKCWS010000072.1 96.27 True local misassembly 53903656 53906118 505486 503024 NC_060933.1 JAKCWS010000072.1 97.83 True relocation, inconsistency = 6176949 60085604 60089765 508023 512229 NC_060933.1 JAKCWS010000072.1 96.23 True CONTIG JAKCWS010000072.1 512544 misassembled 50802698 50805265 2573 1 NC_060933.1 JAKCWS010000073.1 99.38 True relocation, inconsistency = 986471 49799646 49815953 19224 2847 NC_060933.1 JAKCWS010000073.1 96.57 True relocation, inconsistency = -210958 50008890 50010603 20953 19225 NC_060933.1 JAKCWS010000073.1 98.33 True relocation, inconsistency = -83476 50059768 50092254 53401 21065 NC_060933.1 JAKCWS010000073.1 98.89 True fake: not a misassembly (possible transposable element) 50892805 50893373 54952 54384 NC_060933.1 JAKCWS010000073.1 99.47 True fake: not a misassembly (possible transposable element) 50053852 50059205 61667 56304 NC_060933.1 JAKCWS010000073.1 98.8 True local misassembly 50036649 50059775 84809 61668 NC_060933.1 JAKCWS010000073.1 99.12 True relocation, inconsistency = -193195 50228896 50229524 85757 85129 NC_060933.1 JAKCWS010000073.1 99.68 True indel: indel (<= 5bp) 50227970 50228895 86688 85763 NC_060933.1 JAKCWS010000073.1 99.68 True indel: indel (> 5bp) 50227395 50227907 87253 86741 NC_060933.1 JAKCWS010000073.1 99.81 True relocation, inconsistency = 192039 50027829 50034276 94790 88333 NC_060933.1 JAKCWS010000073.1 99.19 True relocation, inconsistency = -559186 50580423 50587014 101412 94791 NC_060933.1 JAKCWS010000073.1 97.84 True relocation, inconsistency = 247469 50287369 50332953 147141 101413 NC_060933.1 JAKCWS010000073.1 99.18 True relocation, inconsistency = 7293 50271581 50280075 155586 147142 NC_060933.1 JAKCWS010000073.1 99.13 True local misassembly 50269716 50277345 163216 155587 NC_060933.1 JAKCWS010000073.1 99.37 True local misassembly 50252422 50268657 179227 163217 NC_060933.1 JAKCWS010000073.1 97.68 True relocation, inconsistency = 1326923 51595581 51596156 179228 179803 NC_060933.1 JAKCWS010000073.1 99.67 True relocation, inconsistency = 672772 50912002 50922560 190605 180052 NC_060933.1 JAKCWS010000073.1 99.5 True local misassembly 50901033 50915531 204974 190606 NC_060933.1 JAKCWS010000073.1 96.38 True relocation, inconsistency = 919176 49971496 49981856 215151 204975 NC_060933.1 JAKCWS010000073.1 96.51 True relocation, inconsistency = 1613724 51595581 51596156 215152 215727 NC_060933.1 JAKCWS010000073.1 99.67 True relocation, inconsistency = 672772 50912002 50922560 226529 215976 NC_060933.1 JAKCWS010000073.1 99.5 True local misassembly 50901143 50915531 240724 226530 NC_060933.1 JAKCWS010000073.1 97.07 True relocation, inconsistency = 260741 50621052 50640401 260220 240725 NC_060933.1 JAKCWS010000073.1 98.01 True relocation, inconsistency = 249687 50370386 50371364 261344 260221 NC_060933.1 JAKCWS010000073.1 97.17 True local misassembly 50368044 50369097 263974 262916 NC_060933.1 JAKCWS010000073.1 98.83 True relocation, inconsistency = 11241 50354708 50356802 266053 263975 NC_060933.1 JAKCWS010000073.1 97.05 True relocation, inconsistency = -1648242 51998102 52002949 270916 266054 NC_060933.1 JAKCWS010000073.1 98.24 True local misassembly 51998808 52000177 272266 270917 NC_060933.1 JAKCWS010000073.1 98.34 True local misassembly 51997654 52002949 277602 272267 NC_060933.1 JAKCWS010000073.1 97.28 True relocation, inconsistency = 1943359 50030398 50054294 301688 277603 NC_060933.1 JAKCWS010000073.1 95.75 True relocation, inconsistency = -555319 50583182 50585716 304203 301689 NC_060933.1 JAKCWS010000073.1 98.61 True relocation, inconsistency = -1328601 51911079 51911782 304917 304204 NC_060933.1 JAKCWS010000073.1 98.34 True relocation, inconsistency = 1020926 50880865 50890152 314175 304918 NC_060933.1 JAKCWS010000073.1 99.1 True local misassembly 50865638 50878673 327241 314176 NC_060933.1 JAKCWS010000073.1 98.74 True relocation, inconsistency = 19756 50843613 50845881 329510 327242 NC_060933.1 JAKCWS010000073.1 99.49 True indel: indel (> 5bp) 50828232 50843565 345051 329578 NC_060933.1 JAKCWS010000073.1 98.36 True relocation, inconsistency = 12652 50802698 50815579 357863 345052 NC_060933.1 JAKCWS010000073.1 98.52 True relocation, inconsistency = 986471 49807194 49815953 366961 358137 NC_060933.1 JAKCWS010000073.1 95.55 True relocation, inconsistency = -207541 50008890 50014634 372826 367062 NC_060933.1 JAKCWS010000073.1 98.58 True CONTIG JAKCWS010000073.1 373019 misassembled 2331 409720 5382 413725 NC_060934.1 CM039043.1 99.7 True local misassembly 410407 735035 415492 741609 NC_060934.1 CM039043.1 99.24 True local misassembly 736265 742422 743476 749570 NC_060934.1 CM039043.1 97.29 True local misassembly 742756 774381 751470 783139 NC_060934.1 CM039043.1 99.3 True indel: indel (> 5bp) 774494 775488 783287 784281 NC_060934.1 CM039043.1 99.5 True local misassembly 776001 776577 784651 785227 NC_060934.1 CM039043.1 99.13 True indel: indel (> 5bp) 776652 777599 785228 786175 NC_060934.1 CM039043.1 100.0 True local misassembly 778358 1232638 786705 1241353 NC_060934.1 CM039043.1 99.03 True local misassembly 1232869 1325315 1241487 1333771 NC_060934.1 CM039043.1 98.06 True local misassembly 1326487 2390787 1334486 2399158 NC_060934.1 CM039043.1 98.94 True local misassembly 2391369 2520048 2405079 2533813 NC_060934.1 CM039043.1 99.67 True local misassembly 2522037 3107571 2535354 3118628 NC_060934.1 CM039043.1 99.44 True local misassembly 3107519 3132153 3118901 3143343 NC_060934.1 CM039043.1 98.6 True indel: stretch of mismatches 3132181 3316225 3143371 3327658 NC_060934.1 CM039043.1 99.38 True local misassembly 3316460 3461252 3328093 3472677 NC_060934.1 CM039043.1 99.11 True local misassembly 3461211 3474738 3472820 3486613 NC_060934.1 CM039043.1 95.05 True indel: indel (> 5bp) 3474832 4498803 3486717 4510712 NC_060934.1 CM039043.1 99.75 True indel: indel (> 5bp) 4498867 5169904 4510823 5183493 NC_060934.1 CM039043.1 99.32 True local misassembly 5171219 5371783 5183494 5384084 NC_060934.1 CM039043.1 99.8 True local misassembly 5373723 6646948 5384695 6653938 NC_060934.1 CM039043.1 98.89 True local misassembly 6647137 7629512 6654014 7634947 NC_060934.1 CM039043.1 99.61 True indel: indel (> 5bp) 7629941 8423606 7635400 8428678 NC_060934.1 CM039043.1 99.47 True indel: indel (<= 5bp) 8423700 8987552 8428775 8995432 NC_060934.1 CM039043.1 99.19 True local misassembly 8987907 9412155 8995991 9420571 NC_060934.1 CM039043.1 99.56 True indel: indel (> 5bp) 9412553 10707037 9421049 10710161 NC_060934.1 CM039043.1 99.21 True indel: stretch of mismatches 10707126 12841657 10710250 12840861 NC_060934.1 CM039043.1 99.5 True indel: indel (> 5bp) 12841703 15247885 12840895 15249555 NC_060934.1 CM039043.1 99.62 True indel: indel (> 5bp) 15247953 19727710 15249572 19730870 NC_060934.1 CM039043.1 99.7 True local misassembly 19727339 27346910 19731955 27355762 NC_060934.1 CM039043.1 99.73 True relocation, inconsistency = -47292 27346944 29164746 27403088 29221043 NC_060934.1 CM039043.1 99.67 True indel: indel (> 5bp) 29164799 29461570 29221113 29518606 NC_060934.1 CM039043.1 99.52 True indel: indel (> 5bp) 29461575 36042169 29518655 36098821 NC_060934.1 CM039043.1 99.69 True local misassembly 36042697 36043768 36099352 36100423 NC_060934.1 CM039043.1 96.92 True indel: indel (<= 5bp) 36044244 37137222 36100896 37192444 NC_060934.1 CM039043.1 99.6 True inversion 37137223 37143194 37198416 37192445 NC_060934.1 CM039043.1 99.81 True inversion 37143195 38156714 37198417 38212245 NC_060934.1 CM039043.1 99.8 True indel: indel (> 5bp) 38156785 38582590 38212384 38638915 NC_060934.1 CM039043.1 98.93 True relocation, inconsistency = -7774 38576235 38577102 38640334 38641201 NC_060934.1 CM039043.1 98.5 True indel: indel (> 5bp) 38577275 38578026 38641409 38642160 NC_060934.1 CM039043.1 95.21 True local misassembly 38578624 38579196 38642666 38643238 NC_060934.1 CM039043.1 97.56 True relocation, inconsistency = 7678 38586923 38587444 38643287 38643818 NC_060934.1 CM039043.1 96.24 True indel: indel (> 5bp) 38587822 38588380 38644212 38644770 NC_060934.1 CM039043.1 96.6 True local misassembly 38590475 38591594 38646985 38648113 NC_060934.1 CM039043.1 96.21 True relocation, inconsistency = -7146 38587827 38588380 38651492 38652045 NC_060934.1 CM039043.1 96.75 True local misassembly 38592062 38592814 38656241 38656993 NC_060934.1 CM039043.1 95.88 True relocation, inconsistency = 7058 38601035 38602056 38658156 38659177 NC_060934.1 CM039043.1 96.97 True local misassembly 38608011 38608729 38664283 38665001 NC_060934.1 CM039043.1 97.36 True local misassembly 38612067 38612607 38668415 38668955 NC_060934.1 CM039043.1 97.41 True local misassembly 38613497 38614919 38669766 38671188 NC_060934.1 CM039043.1 98.88 True indel: indel (> 5bp) 38614920 38615652 38671199 38671931 NC_060934.1 CM039043.1 96.18 True local misassembly 38616257 38616898 38672456 38673097 NC_060934.1 CM039043.1 96.73 True local misassembly 38617832 38618344 38674046 38674558 NC_060934.1 CM039043.1 97.47 True relocation, inconsistency = -8421 38610125 38611432 38674760 38676072 NC_060934.1 CM039043.1 96.28 True local misassembly 38612189 38612707 38676838 38677356 NC_060934.1 CM039043.1 96.53 True local misassembly 38613313 38614168 38677943 38678798 NC_060934.1 CM039043.1 98.83 True local misassembly 38616257 38616898 38680799 38681440 NC_060934.1 CM039043.1 96.73 True indel: indel (> 5bp) 38616999 38617826 38681556 38682383 NC_060934.1 CM039043.1 98.55 True indel: indel (<= 5bp) 38617832 38618541 38682384 38683093 NC_060934.1 CM039043.1 98.59 True relocation, inconsistency = -8378 38610378 38629902 38683308 38702598 NC_060934.1 CM039043.1 96.09 True relocation, inconsistency = -8942 38629890 38652841 38711528 38734485 NC_060934.1 CM039043.1 98.0 True local misassembly 38652821 38870001 38738226 38955216 NC_060934.1 CM039043.1 99.16 True local misassembly 38868152 39416211 38956171 39504090 NC_060934.1 CM039043.1 99.37 True local misassembly 39416813 39480853 39504488 39568525 NC_060934.1 CM039043.1 99.85 True local misassembly 39474197 39480818 39568526 39575147 NC_060934.1 CM039043.1 99.81 True local misassembly 39474162 39636343 39575148 39742440 NC_060934.1 CM039043.1 96.73 True local misassembly 39634175 39634986 39745361 39746172 NC_060934.1 CM039043.1 97.04 True local misassembly 39635415 39636872 39746942 39748399 NC_060934.1 CM039043.1 99.66 True local misassembly 39641999 39642602 39748441 39749044 NC_060934.1 CM039043.1 98.34 True relocation, inconsistency = -7802 39635415 39643779 39749659 39757684 NC_060934.1 CM039043.1 95.09 True local misassembly 39641065 39645315 39757685 39761933 NC_060934.1 CM039043.1 99.12 True local misassembly 39642601 39644547 39761934 39763880 NC_060934.1 CM039043.1 97.88 True local misassembly 39641833 39645794 39763881 39767843 NC_060934.1 CM039043.1 97.75 True local misassembly 39643081 39644547 39767844 39769310 NC_060934.1 CM039043.1 97.88 True local misassembly 39641833 39646744 39769311 39774224 NC_060934.1 CM039043.1 97.35 True relocation, inconsistency = -7460 39643605 39644105 39778545 39779045 NC_060934.1 CM039043.1 98.49 True relocation, inconsistency = 21047 39665153 39667997 39779046 39781890 NC_060934.1 CM039043.1 99.09 True local misassembly 39667998 39669560 39782231 39783793 NC_060934.1 CM039043.1 96.16 True indel: indel (<= 5bp) 39669562 39670080 39783794 39784312 NC_060934.1 CM039043.1 95.14 True local misassembly 39668724 39670850 39784313 39786436 NC_060934.1 CM039043.1 96.71 True relocation, inconsistency = 1718065 41390532 41391428 39788053 39788949 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 232307 41623736 41630608 39788950 39795820 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = 16118 41652001 41656376 39801095 39805468 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = -725288 40933525 40937511 39807905 39811888 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = 331439 41268951 41274148 39811889 39817086 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 141692 41415841 41418186 39817087 39819432 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = 11875 41430760 41432458 39820131 39821829 NC_060934.1 CM039043.1 97.41 True local misassembly 41429065 41429829 39821830 39822594 NC_060934.1 CM039043.1 97.06 True local misassembly 41433223 41434821 39822595 39824193 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 218221 41653043 41654963 39824194 39826114 NC_060934.1 CM039043.1 98.18 True local misassembly 41652960 41654734 39826827 39828600 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = -119821 41534914 41539960 39828601 39833646 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = 82485 41625093 41626880 39836294 39838081 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = -97760 41529222 41532894 39838183 39841857 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = 35645 41568540 41569487 39841858 39842805 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -236028 41333460 41335463 39842806 39844809 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = 93840 41430760 41433062 39846266 39848568 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -1687689 39746033 39748035 39849228 39851230 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = 1643738 41393303 41394167 39852760 39853624 NC_060934.1 CM039043.1 98.15 True relocation, inconsistency = 245878 41640060 41641801 39853639 39855380 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = -312735 41329134 41329862 39855448 39856176 NC_060934.1 CM039043.1 98.49 True relocation, inconsistency = -446821 40883042 40887703 39856177 39860840 NC_060934.1 CM039043.1 97.86 True relocation, inconsistency = 691336 41581442 41584154 39863243 39865955 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = -153053 41431102 41433062 39865956 39867916 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -1687689 39746033 39748035 39868576 39870578 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 1876045 41625470 41626854 39871968 39873352 NC_060934.1 CM039043.1 97.91 True relocation, inconsistency = -412176 41215074 41219137 39873748 39877807 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = 38013 41257160 41258094 39877817 39878751 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 83821 41341916 41343296 39878752 39880132 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = 248253 41592169 41594607 39880752 39883188 NC_060934.1 CM039043.1 97.91 True relocation, inconsistency = -191410 41404959 41405893 39884950 39885884 NC_060934.1 CM039043.1 97.45 True relocation, inconsistency = -1667670 39738224 39740992 39885885 39888653 NC_060934.1 CM039043.1 97.44 True relocation, inconsistency = 1900819 41642097 41643815 39888939 39890656 NC_060934.1 CM039043.1 97.5 True relocation, inconsistency = -206006 41438469 41444613 39891316 39897462 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = -543372 40901242 40902298 39897463 39898519 NC_060934.1 CM039043.1 97.83 True relocation, inconsistency = 8824 40911387 40912070 39898784 39899467 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = 658412 41570483 41573869 39899468 39902852 NC_060934.1 CM039043.1 97.73 True relocation, inconsistency = -125227 41448969 41452661 39903179 39906871 NC_060934.1 CM039043.1 97.75 True local misassembly 41452729 41454782 39907280 39909333 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = -1755900 39698883 39701636 39909334 39912087 NC_060934.1 CM039043.1 97.89 True indel: indel (<= 5bp) 39701638 39702247 39912088 39912697 NC_060934.1 CM039043.1 97.38 True indel: indel (<= 5bp) 39702249 39703000 39912698 39913449 NC_060934.1 CM039043.1 98.67 True local misassembly 39703341 39705144 39913450 39915253 NC_060934.1 CM039043.1 97.67 True indel: indel (<= 5bp) 39705145 39705894 39915256 39916005 NC_060934.1 CM039043.1 97.47 True local misassembly 39706409 39707931 39916519 39918041 NC_060934.1 CM039043.1 97.64 True indel: indel (> 5bp) 39708359 39709375 39918463 39919479 NC_060934.1 CM039043.1 97.54 True fake: not a misassembly (possible transposable element) 41463918 41466653 39920839 39923576 NC_060934.1 CM039043.1 97.95 True fake: not a misassembly (possible transposable element) 39713814 39714553 39923916 39924655 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = 1770479 41485033 41492474 39924656 39932105 NC_060934.1 CM039043.1 97.91 True relocation, inconsistency = -49867 41442608 41443581 39932106 39933079 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = -51075 41393926 41396292 39934499 39936865 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = 165776 41562069 41562693 39936866 39937490 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -1843450 39719620 39720551 39937867 39938798 NC_060934.1 CM039043.1 98.74 True relocation, inconsistency = 1932720 41653272 41655017 39938799 39940544 NC_060934.1 CM039043.1 98.51 True relocation, inconsistency = -262511 41393926 41396292 39941964 39944330 NC_060934.1 CM039043.1 97.85 True relocation, inconsistency = 32413 41428706 41429702 39944331 39945327 NC_060934.1 CM039043.1 97.79 True local misassembly 41429703 41430298 39945668 39946263 NC_060934.1 CM039043.1 98.68 True relocation, inconsistency = 222973 41653272 41654586 39946264 39947578 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = -1914731 39743316 39745365 39951039 39953089 NC_060934.1 CM039043.1 96.98 True fake: not a misassembly (possible transposable element) 41498857 41500916 39954093 39956152 NC_060934.1 CM039043.1 97.43 True fake: not a misassembly (possible transposable element) 39749086 39752527 39956469 39959910 NC_060934.1 CM039043.1 97.44 True relocation, inconsistency = 10519 39764108 39764827 39960972 39961694 NC_060934.1 CM039043.1 96.19 True relocation, inconsistency = -56331 39708497 39710402 39961695 39963600 NC_060934.1 CM039043.1 97.48 True local misassembly 39711566 39712820 39964763 39966017 NC_060934.1 CM039043.1 97.69 True local misassembly 39713434 39714857 39966629 39968052 NC_060934.1 CM039043.1 97.68 True local misassembly 39715471 39719922 39968664 39973116 NC_060934.1 CM039043.1 97.35 True relocation, inconsistency = 1213202 40933125 40934534 39973117 39974524 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 459042 41393959 41396581 39974907 39977527 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -1727573 39671820 39673081 39980339 39981600 NC_060934.1 CM039043.1 98.34 True relocation, inconsistency = 1872640 41547102 41549142 39982981 39985020 NC_060934.1 CM039043.1 96.82 True fake: not a misassembly (possible transposable element) 39759903 39760610 39985612 39986319 NC_060934.1 CM039043.1 97.6 True fake: not a misassembly (possible transposable element) 41551555 41552835 39988788 39990068 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -1895042 39657985 39660650 39990260 39992925 NC_060934.1 CM039043.1 96.74 True relocation, inconsistency = 1773558 41434209 41434833 39992926 39993550 NC_060934.1 CM039043.1 97.41 True relocation, inconsistency = -672154 40765976 40768420 39996847 39999291 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 872389 41640810 41642712 39999292 40001194 NC_060934.1 CM039043.1 97.42 True indel: indel (<= 5bp) 41642714 41643805 40001195 40002286 NC_060934.1 CM039043.1 97.89 True local misassembly 41643806 41646593 40002626 40005413 NC_060934.1 CM039043.1 98.01 True relocation, inconsistency = -256062 41390532 41396275 40005414 40011152 NC_060934.1 CM039043.1 97.51 True local misassembly 41402559 41403071 40011153 40011665 NC_060934.1 CM039043.1 97.36 True relocation, inconsistency = 157119 41562701 41568125 40014176 40019599 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -7807 41560761 41562683 40020042 40021964 NC_060934.1 CM039043.1 97.71 True local misassembly 41562684 41564984 40022304 40024604 NC_060934.1 CM039043.1 97.91 True indel: indel (<= 5bp) 41564986 41566065 40024605 40025684 NC_060934.1 CM039043.1 97.85 True relocation, inconsistency = 88929 41654995 41659497 40025685 40030190 NC_060934.1 CM039043.1 97.2 True relocation, inconsistency = -1920161 39739337 39741979 40030191 40032833 NC_060934.1 CM039043.1 97.65 True local misassembly 39748067 39748667 40033150 40033750 NC_060934.1 CM039043.1 97.67 True local misassembly 39745454 39747749 40036642 40038933 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = 1798995 41547159 41551466 40039348 40043650 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -97732 41454015 41454768 40043931 40044684 NC_060934.1 CM039043.1 97.48 True local misassembly 41454769 41456337 40045020 40046588 NC_060934.1 CM039043.1 97.96 True indel: indel (<= 5bp) 41456338 41457480 40046591 40047733 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 182931 41640412 41643174 40047734 40050494 NC_060934.1 CM039043.1 97.5 True local misassembly 41643895 41645586 40051212 40052903 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = -292374 41354558 41360601 40054249 40060286 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = 44630 41405232 41406880 40060287 40061939 NC_060934.1 CM039043.1 97.51 True relocation, inconsistency = 232814 41640399 41643815 40062644 40066059 NC_060934.1 CM039043.1 97.19 True local misassembly 41640399 41643815 40066376 40069792 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 10863 41654995 41659448 40070109 40074565 NC_060934.1 CM039043.1 97.26 True relocation, inconsistency = -2003316 39656172 39657068 40074605 40075501 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = 936139 40593208 40594133 40075502 40076427 NC_060934.1 CM039043.1 98.27 True indel: indel (<= 5bp) 40594135 40595859 40076428 40078152 NC_060934.1 CM039043.1 97.8 True local misassembly 40595860 40596724 40078320 40079184 NC_060934.1 CM039043.1 98.73 True relocation, inconsistency = 1034087 41630983 41632591 40079356 40080963 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -1871636 39760956 39762318 40080964 40082326 NC_060934.1 CM039043.1 98.38 True relocation, inconsistency = 1862134 41624453 41626116 40082327 40083990 NC_060934.1 CM039043.1 97.42 True local misassembly 41626457 41627263 40083991 40084797 NC_060934.1 CM039043.1 97.89 True local misassembly 41627271 41629978 40085144 40087852 NC_060934.1 CM039043.1 98.01 True local misassembly 41630983 41633701 40088860 40091580 NC_060934.1 CM039043.1 97.35 True fake: not a misassembly (possible transposable element) 39756303 39758318 40091581 40093595 NC_060934.1 CM039043.1 97.77 True fake: not a misassembly (possible transposable element) 41640399 41643453 40094199 40097253 NC_060934.1 CM039043.1 97.84 True local misassembly 41643454 41647022 40097594 40101162 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = -1987705 39659483 39660457 40101328 40102303 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = 1254961 40915440 40919237 40102325 40106124 NC_060934.1 CM039043.1 97.58 True relocation, inconsistency = 730713 41649951 41652687 40106125 40108861 NC_060934.1 CM039043.1 98.56 True local misassembly 41653026 41654651 40108862 40110487 NC_060934.1 CM039043.1 98.52 True indel: indel (<= 5bp) 41654995 41657365 40110830 40113201 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = -21384 41636333 41637646 40113553 40114866 NC_060934.1 CM039043.1 97.67 True relocation, inconsistency = 11541 41649188 41652695 40114867 40118374 NC_060934.1 CM039043.1 98.49 True relocation, inconsistency = -1908626 39744087 39748463 40118392 40122767 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = 1888938 41640496 41643815 40125862 40129180 NC_060934.1 CM039043.1 97.38 True relocation, inconsistency = -124909 41519526 41522301 40129800 40132574 NC_060934.1 CM039043.1 97.69 True relocation, inconsistency = 135090 41657691 41658831 40132874 40134014 NC_060934.1 CM039043.1 97.06 True local misassembly 41662220 41664448 40134015 40136245 NC_060934.1 CM039043.1 96.91 True fake: not a misassembly (possible transposable element) 41637999 41640421 40136257 40138680 NC_060934.1 CM039043.1 97.52 True fake: not a misassembly (possible transposable element) 41662171 41664540 40138716 40141086 NC_060934.1 CM039043.1 96.75 True relocation, inconsistency = -26801 41637769 41640421 40141116 40143768 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -10518 41630523 41632218 40144388 40146083 NC_060934.1 CM039043.1 97.64 True local misassembly 41637999 41640421 40146095 40148518 NC_060934.1 CM039043.1 97.57 True relocation, inconsistency = 11542 41652280 41655396 40148835 40151951 NC_060934.1 CM039043.1 98.3 True local misassembly 41655758 41658118 40152654 40155011 NC_060934.1 CM039043.1 96.82 True relocation, inconsistency = -90623 41568146 41570573 40155662 40158089 NC_060934.1 CM039043.1 97.76 True local misassembly 41568198 41575226 40158090 40165115 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = 54989 41631016 41632975 40165916 40167875 NC_060934.1 CM039043.1 97.55 True fake: not a misassembly (possible transposable element) 41528769 41532873 40167876 40171981 NC_060934.1 CM039043.1 97.61 True fake: not a misassembly (possible transposable element) 41642579 41643491 40173744 40174656 NC_060934.1 CM039043.1 97.48 True local misassembly 41640060 41641067 40174959 40175966 NC_060934.1 CM039043.1 97.92 True fake: not a misassembly (possible transposable element) 41630523 41632557 40178314 40180348 NC_060934.1 CM039043.1 97.05 True fake: not a misassembly (possible transposable element) 41640702 41643453 40180349 40183100 NC_060934.1 CM039043.1 97.78 True local misassembly 41643454 41644439 40183441 40184426 NC_060934.1 CM039043.1 98.21 True local misassembly 41639011 41640398 40184427 40185814 NC_060934.1 CM039043.1 98.27 True local misassembly 41640399 41643478 40186154 40189233 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = -12555 41630924 41633576 40189234 40191888 NC_060934.1 CM039043.1 97.19 True local misassembly 41638025 41640321 40191923 40194220 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = 9845 41650245 41651941 40194299 40195994 NC_060934.1 CM039043.1 98.3 True local misassembly 41655675 41658118 40195995 40198435 NC_060934.1 CM039043.1 96.77 True relocation, inconsistency = -10519 41647600 41649136 40198436 40199972 NC_060934.1 CM039043.1 98.39 True relocation, inconsistency = -222288 41427486 41430083 40200610 40203207 NC_060934.1 CM039043.1 98.19 True local misassembly 41431440 41432021 40203208 40203789 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = 208377 41640399 41643815 40203790 40207204 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = -45473 41598665 41601039 40207527 40209901 NC_060934.1 CM039043.1 98.19 True indel: indel (<= 5bp) 41601306 41602072 40210171 40210937 NC_060934.1 CM039043.1 98.96 True local misassembly 41602073 41604762 40211278 40213967 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = -214994 41389769 41394956 40213968 40219155 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = 169508 41564465 41565105 40219156 40219796 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -1821053 39745447 39748408 40221191 40224152 NC_060934.1 CM039043.1 98.01 True indel: indel (<= 5bp) 39748747 39752187 40224490 40227931 NC_060934.1 CM039043.1 97.09 True relocation, inconsistency = 1888261 41640740 41643815 40228223 40231298 NC_060934.1 CM039043.1 97.3 True local misassembly 41640399 41643478 40231615 40234694 NC_060934.1 CM039043.1 97.44 True relocation, inconsistency = -572715 41070764 41072158 40234695 40236086 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = -1336927 39737545 39739595 40238400 40240448 NC_060934.1 CM039043.1 97.32 True relocation, inconsistency = 920529 40660665 40661273 40240989 40241597 NC_060934.1 CM039043.1 98.03 True relocation, inconsistency = 981986 41643454 41646436 40241792 40244772 NC_060934.1 CM039043.1 98.39 True relocation, inconsistency = -553030 41097550 41098162 40248916 40249528 NC_060934.1 CM039043.1 97.55 True local misassembly 41098818 41099423 40249846 40250451 NC_060934.1 CM039043.1 97.36 True relocation, inconsistency = 461390 41562681 41566801 40252319 40256439 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -185118 41390532 41397286 40265288 40272040 NC_060934.1 CM039043.1 97.2 True relocation, inconsistency = 242485 41639772 41641350 40272041 40273619 NC_060934.1 CM039043.1 97.64 True indel: indel (<= 5bp) 41641352 41642191 40273620 40274459 NC_060934.1 CM039043.1 97.74 True local misassembly 41642192 41643022 40274798 40275628 NC_060934.1 CM039043.1 98.07 True local misassembly 41644587 41646604 40275837 40277852 NC_060934.1 CM039043.1 98.44 True local misassembly 41644567 41648622 40277853 40281903 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648934 40281924 40286287 NC_060934.1 CM039043.1 98.47 True relocation, inconsistency = -94017 41556319 41557305 40287689 40288675 NC_060934.1 CM039043.1 98.07 True relocation, inconsistency = 86212 41644567 41648622 40289725 40293775 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41645328 40293796 40294557 NC_060934.1 CM039043.1 98.82 True indel: indel (<= 5bp) 41645331 41646604 40294558 40295831 NC_060934.1 CM039043.1 98.98 True local misassembly 41646605 41647643 40296170 40297208 NC_060934.1 CM039043.1 97.7 True local misassembly 41644587 41646604 40297209 40299224 NC_060934.1 CM039043.1 98.49 True local misassembly 41644567 41648622 40299225 40303275 NC_060934.1 CM039043.1 98.69 True local misassembly 41644567 41647623 40303296 40306348 NC_060934.1 CM039043.1 98.55 True local misassembly 41644567 41648622 40306349 40310402 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41649221 40311440 40316092 NC_060934.1 CM039043.1 98.39 True relocation, inconsistency = -590707 41058977 41062928 40316555 40320504 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = 274912 41337841 41339605 40320505 40322269 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = 304929 41644567 41649953 40322302 40327683 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = -250798 41401144 41407019 40329672 40335552 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = 236207 41643227 41644090 40335553 40336416 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 39662295 39663214 40336893 40337810 NC_060934.1 CM039043.1 96.74 True fake: not a misassembly (possible transposable element) 41642192 41643813 40338247 40339868 NC_060934.1 CM039043.1 97.84 True local misassembly 41645171 41648622 40339869 40343315 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -23077 41625773 41628587 40343543 40346357 NC_060934.1 CM039043.1 97.58 True relocation, inconsistency = -299165 41329444 41333528 40346379 40350461 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = 312058 41645587 41646436 40350462 40351311 NC_060934.1 CM039043.1 98.55 True relocation, inconsistency = -219577 41427486 41430687 40351938 40355135 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = 131666 41562558 41568099 40355340 40360881 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -234333 41333771 41334543 40360886 40361658 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = 309345 41643889 41647440 40361659 40365208 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = -1902515 39745447 39748364 40365730 40368646 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = 1645094 41394520 41399357 40369708 40374543 NC_060934.1 CM039043.1 97.54 True local misassembly 41399868 41400506 40375052 40375690 NC_060934.1 CM039043.1 97.97 True local misassembly 41400507 41403695 40375858 40379046 NC_060934.1 CM039043.1 97.96 True relocation, inconsistency = 186994 41592291 41596112 40380648 40384465 NC_060934.1 CM039043.1 98.04 True relocation, inconsistency = 49207 41645320 41646436 40384466 40385580 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -547603 41098834 41099660 40385581 40386405 NC_060934.1 CM039043.1 97.73 True relocation, inconsistency = -11874 41088386 41090696 40387005 40389315 NC_060934.1 CM039043.1 97.88 True indel: indel (<= 5bp) 41090697 41092807 40389317 40391427 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = 550995 41643803 41648622 40391428 40396240 NC_060934.1 CM039043.1 98.28 True local misassembly 41645566 41646604 40396241 40397279 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41647623 40397280 40400332 NC_060934.1 CM039043.1 98.4 True local misassembly 41644567 41648622 40400333 40404383 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41647623 40404404 40407452 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 40407453 40411500 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 40412540 40416585 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 40416606 40420654 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = -16969 41635971 41639026 40424972 40428023 NC_060934.1 CM039043.1 97.86 True local misassembly 41635971 41637779 40428024 40429830 NC_060934.1 CM039043.1 97.86 True local misassembly 41644567 41648622 40429831 40433881 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648622 40433902 40437953 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 40438991 40443039 NC_060934.1 CM039043.1 98.59 True local misassembly 41646585 41647623 40443040 40444077 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 40444078 40448128 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 40448149 40452200 NC_060934.1 CM039043.1 98.57 True local misassembly 41645566 41648622 40452201 40455252 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41646604 40455273 40457306 NC_060934.1 CM039043.1 98.57 True local misassembly 41644567 41648622 40457307 40461357 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = -8151 41644567 41648622 40465453 40469503 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41646829 40469524 40471782 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41647848 40474950 40478227 NC_060934.1 CM039043.1 98.42 True fake: not a misassembly (possible transposable element) 40918258 40919417 40478669 40479828 NC_060934.1 CM039043.1 98.1 True fake: not a misassembly (possible transposable element) 41645114 41648622 40481942 40485446 NC_060934.1 CM039043.1 98.18 True local misassembly 41644567 41648622 40486144 40490195 NC_060934.1 CM039043.1 98.47 True local misassembly 41645566 41648622 40490196 40493247 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41646604 40493268 40495302 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 40495303 40499352 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 40499373 40503421 NC_060934.1 CM039043.1 98.32 True relocation, inconsistency = -7131 41644567 41648622 40506497 40510540 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41648622 40510561 40514610 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 40515650 40519698 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41645585 40521752 40522768 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41648622 40522769 40526816 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 40526837 40530883 NC_060934.1 CM039043.1 98.42 True relocation, inconsistency = -855416 40796143 40797294 40533820 40534969 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = 847272 41644567 41647623 40534970 40538020 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 40538021 40542071 NC_060934.1 CM039043.1 98.57 True local misassembly 41644567 41646604 40542092 40544127 NC_060934.1 CM039043.1 98.4 True local misassembly 41644567 41648622 40544128 40548176 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41648622 40548197 40552248 NC_060934.1 CM039043.1 98.45 True local misassembly 41645566 41647623 40552249 40554299 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 40554300 40558349 NC_060934.1 CM039043.1 98.57 True local misassembly 41644567 41648622 40558370 40562420 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 40562441 40566492 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41648622 40566493 40569544 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41645452 40569565 40570448 NC_060934.1 CM039043.1 98.57 True fake: not a misassembly (possible transposable element) 41048292 41052480 40570449 40574635 NC_060934.1 CM039043.1 98.83 True fake: not a misassembly (possible transposable element) 41644567 41648622 40575675 40579725 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648622 40579746 40583799 NC_060934.1 CM039043.1 98.57 True local misassembly 41644567 41648622 40583820 40587871 NC_060934.1 CM039043.1 98.5 True local misassembly 41645566 41648622 40587872 40590925 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648622 40590946 40594997 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41648622 40594998 40598048 NC_060934.1 CM039043.1 98.59 True relocation, inconsistency = -19354 41644567 41648622 40613347 40617397 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41646829 40618437 40620695 NC_060934.1 CM039043.1 98.67 True relocation, inconsistency = -7812 41644567 41646829 40626245 40628503 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41647848 40629977 40633256 NC_060934.1 CM039043.1 98.6 True local misassembly 41644567 41647848 40633709 40636986 NC_060934.1 CM039043.1 98.48 True fake: not a misassembly (possible transposable element) 40918258 40919417 40637428 40638587 NC_060934.1 CM039043.1 98.1 True fake: not a misassembly (possible transposable element) 41645114 41646829 40640701 40642414 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41648622 40642867 40646918 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41646829 40646939 40649201 NC_060934.1 CM039043.1 98.85 True local misassembly 41645114 41646829 40653933 40655646 NC_060934.1 CM039043.1 98.25 True local misassembly 41644567 41648622 40656099 40660150 NC_060934.1 CM039043.1 98.67 True local misassembly 41645566 41646829 40660151 40661414 NC_060934.1 CM039043.1 98.85 True local misassembly 41644567 41646829 40662884 40665146 NC_060934.1 CM039043.1 98.72 True local misassembly 41645178 41646829 40669942 40671591 NC_060934.1 CM039043.1 98.43 True relocation, inconsistency = -511284 41135743 41136759 40671789 40672805 NC_060934.1 CM039043.1 99.02 True indel: indel (<= 5bp) 41136762 41137367 40672806 40673411 NC_060934.1 CM039043.1 98.68 True relocation, inconsistency = 504497 41644567 41646829 40676114 40678376 NC_060934.1 CM039043.1 98.81 True local misassembly 41645114 41646829 40683108 40684821 NC_060934.1 CM039043.1 98.25 True local misassembly 41645114 41646829 40687517 40689230 NC_060934.1 CM039043.1 98.31 True local misassembly 41644567 41646829 40693755 40696017 NC_060934.1 CM039043.1 98.76 True local misassembly 41644567 41648622 40696470 40700521 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41648622 40701219 40705270 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41646826 40705271 40706531 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41647623 40706987 40710039 NC_060934.1 CM039043.1 98.5 True local misassembly 41644567 41648622 40710040 40714092 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41648622 40714113 40718164 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41647623 40718165 40720219 NC_060934.1 CM039043.1 98.4 True local misassembly 41644567 41648622 40720220 40724269 NC_060934.1 CM039043.1 98.59 True local misassembly 41646585 41648622 40724270 40726297 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41648622 40726318 40730366 NC_060934.1 CM039043.1 98.42 True local misassembly 41645566 41647623 40730367 40732420 NC_060934.1 CM039043.1 98.54 True local misassembly 41644567 41648622 40732421 40736470 NC_060934.1 CM039043.1 98.45 True local misassembly 41646585 41648622 40736471 40738504 NC_060934.1 CM039043.1 98.41 True local misassembly 41644567 41648622 40739544 40743591 NC_060934.1 CM039043.1 98.47 True relocation, inconsistency = -9845 41638778 41639796 40743592 40744610 NC_060934.1 CM039043.1 97.91 True local misassembly 41644567 41648622 40744631 40748678 NC_060934.1 CM039043.1 98.59 True local misassembly 41646585 41647623 40748679 40749715 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 40749716 40753763 NC_060934.1 CM039043.1 98.35 True local misassembly 41645566 41646829 40753764 40755025 NC_060934.1 CM039043.1 98.63 True local misassembly 41644567 41648622 40756497 40760548 NC_060934.1 CM039043.1 98.55 True local misassembly 41645566 41646829 40760549 40761810 NC_060934.1 CM039043.1 98.76 True local misassembly 41644567 41648622 40763282 40767333 NC_060934.1 CM039043.1 98.55 True relocation, inconsistency = -39730 41644567 41648622 40803008 40807056 NC_060934.1 CM039043.1 98.55 True local misassembly 41644567 41648622 40807077 40811127 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41645585 40811148 40812164 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 40812165 40816215 NC_060934.1 CM039043.1 98.52 True relocation, inconsistency = -7129 41644567 41648622 40819289 40823342 NC_060934.1 CM039043.1 98.74 True local misassembly 41645566 41647623 40823343 40825399 NC_060934.1 CM039043.1 98.69 True local misassembly 41644567 41648622 40825400 40829454 NC_060934.1 CM039043.1 98.77 True local misassembly 41644567 41647623 40829475 40832528 NC_060934.1 CM039043.1 98.72 True local misassembly 41644567 41648622 40832529 40836581 NC_060934.1 CM039043.1 98.82 True relocation, inconsistency = -7129 41644567 41648622 40839655 40843704 NC_060934.1 CM039043.1 98.57 True local misassembly 41644567 41648622 40843725 40847773 NC_060934.1 CM039043.1 98.59 True local misassembly 41645566 41646604 40847774 40848810 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41648622 40848811 40852860 NC_060934.1 CM039043.1 98.5 True local misassembly 41644567 41648622 40852881 40856933 NC_060934.1 CM039043.1 98.57 True relocation, inconsistency = -7133 41644567 41646604 40860011 40862045 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41647623 40862046 40865100 NC_060934.1 CM039043.1 98.77 True local misassembly 41644567 41648622 40865101 40869155 NC_060934.1 CM039043.1 98.79 True local misassembly 41644567 41646519 40870195 40872144 NC_060934.1 CM039043.1 98.82 True translocation, scaffold gap is present 92897323 92900740 40875762 40872345 NC_060927.1 CM039043.1 99.62 True local misassembly 92870495 92903104 40908370 40875763 NC_060927.1 CM039043.1 99.65 True translocation 41601790 41604446 40908371 40911026 NC_060934.1 CM039043.1 97.63 True local misassembly 41606824 41607853 40913408 40914437 NC_060934.1 CM039043.1 97.38 True indel: indel (<= 5bp) 41607855 41608560 40914438 40915143 NC_060934.1 CM039043.1 98.02 True relocation, inconsistency = -1880448 39728130 39731540 40915161 40918570 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 1922875 41654416 41656378 40918571 40920533 NC_060934.1 CM039043.1 98.5 True indel: indel (<= 5bp) 41656379 41657408 40920535 40921564 NC_060934.1 CM039043.1 96.89 True indel: indel (<= 5bp) 41657409 41657950 40921566 40922107 NC_060934.1 CM039043.1 97.23 True relocation, inconsistency = -79083 41578967 41580079 40922207 40923319 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 26474 41608928 41609829 40925694 40926590 NC_060934.1 CM039043.1 97.01 True relocation, inconsistency = -1861110 39748734 39750495 40926605 40928367 NC_060934.1 CM039043.1 97.11 True relocation, inconsistency = -35291 39715828 39717622 40928991 40930783 NC_060934.1 CM039043.1 97.43 True relocation, inconsistency = 1923552 41641175 41645826 40930784 40935431 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -1900818 39745335 39746258 40935758 40936681 NC_060934.1 CM039043.1 98.05 True indel: indel (<= 5bp) 39746411 39747116 40936832 40937537 NC_060934.1 CM039043.1 97.88 True local misassembly 39747455 39748678 40937538 40938761 NC_060934.1 CM039043.1 97.47 True indel: indel (<= 5bp) 39748680 39750882 40938762 40940964 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = -22737 39728178 39731540 40940997 40944357 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 11196 39742939 39744222 40944560 40945843 NC_060934.1 CM039043.1 98.13 True indel: indel (<= 5bp) 39744224 39744862 40945844 40946482 NC_060934.1 CM039043.1 97.97 True local misassembly 39745335 39746258 40947294 40948217 NC_060934.1 CM039043.1 98.05 True indel: indel (<= 5bp) 39746411 39747116 40948368 40949073 NC_060934.1 CM039043.1 98.16 True local misassembly 39747455 39748678 40949074 40950297 NC_060934.1 CM039043.1 97.63 True indel: indel (<= 5bp) 39748680 39750882 40950298 40952500 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = -31562 39719638 39720806 40952818 40953986 NC_060934.1 CM039043.1 98.12 True indel: indel (<= 5bp) 39720957 39721664 40954135 40954842 NC_060934.1 CM039043.1 97.88 True local misassembly 39721665 39722165 40955181 40955681 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 39722166 39722993 40955683 40956510 NC_060934.1 CM039043.1 97.22 True indel: indel (<= 5bp) 39722995 39723844 40956511 40957360 NC_060934.1 CM039043.1 97.65 True local misassembly 39723964 39724927 40957821 40958784 NC_060934.1 CM039043.1 97.51 True relocation, inconsistency = 1675812 41402160 41403217 40960205 40961262 NC_060934.1 CM039043.1 97.73 True indel: indel (<= 5bp) 41403219 41404068 40961263 40962112 NC_060934.1 CM039043.1 98.12 True local misassembly 41404566 41405084 40962951 40963469 NC_060934.1 CM039043.1 97.3 True relocation, inconsistency = -1675469 39729727 39731524 40963581 40965378 NC_060934.1 CM039043.1 98.18 True local misassembly 39728130 39731540 40965379 40968788 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = 1922875 41654416 41656378 40968789 40970751 NC_060934.1 CM039043.1 98.5 True indel: indel (<= 5bp) 41656379 41657408 40970753 40971782 NC_060934.1 CM039043.1 96.89 True indel: indel (<= 5bp) 41657409 41657950 40971784 40972325 NC_060934.1 CM039043.1 97.23 True local misassembly 41652961 41654963 40972425 40974427 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = -303915 41353744 41354795 40977123 40978174 NC_060934.1 CM039043.1 97.81 True local misassembly 41354796 41357175 40978515 40980894 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = -1627785 39729392 39731153 40980896 40982658 NC_060934.1 CM039043.1 97.22 True relocation, inconsistency = -15949 39715828 39717887 40983282 40985338 NC_060934.1 CM039043.1 97.38 True relocation, inconsistency = -71959 39647050 39653394 40986460 40992803 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = 1872299 41525694 41527645 40992804 40994755 NC_060934.1 CM039043.1 97.79 True relocation, inconsistency = -1768788 39759600 39760233 40995498 40996131 NC_060934.1 CM039043.1 99.37 True relocation, inconsistency = -40380 39721257 39725628 40997535 41001904 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = 1669190 41396180 41397236 41003266 41004322 NC_060934.1 CM039043.1 98.03 True relocation, inconsistency = -42763 41354474 41358685 41004323 41008534 NC_060934.1 CM039043.1 98.06 True local misassembly 41353934 41358641 41008535 41013248 NC_060934.1 CM039043.1 97.81 True local misassembly 41353890 41360508 41013249 41019873 NC_060934.1 CM039043.1 97.9 True local misassembly 41355757 41358641 41019874 41022764 NC_060934.1 CM039043.1 97.87 True local misassembly 41353890 41360961 41022765 41029842 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = 214304 41577896 41580328 41032473 41034905 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = -1930004 39651395 39658028 41035976 41042610 NC_060934.1 CM039043.1 97.71 True fake: not a misassembly (possible transposable element) 39719913 39721693 41044075 41045855 NC_060934.1 CM039043.1 97.42 True fake: not a misassembly (possible transposable element) 39664250 39664885 41048821 41049456 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 39664886 39665906 41049458 41050478 NC_060934.1 CM039043.1 97.94 True local misassembly 39664250 39664885 41053567 41054202 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 39664886 39665906 41054204 41055224 NC_060934.1 CM039043.1 97.94 True local misassembly 39662963 39663491 41056693 41057221 NC_060934.1 CM039043.1 98.3 True indel: indel (<= 5bp) 39663585 39664249 41057313 41057977 NC_060934.1 CM039043.1 96.84 True relocation, inconsistency = 1965648 41630523 41633801 41058603 41061882 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = -72636 41562671 41568125 41063388 41068840 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = -137777 41430804 41432117 41069296 41070609 NC_060934.1 CM039043.1 97.58 True relocation, inconsistency = -78227 41353891 41357527 41070610 41074246 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = 267942 41625470 41630242 41074247 41079019 NC_060934.1 CM039043.1 97.84 True local misassembly 41630983 41632228 41079761 41081006 NC_060934.1 CM039043.1 96.87 True fake: not a misassembly (possible transposable element) 39661520 39664056 41082391 41084924 NC_060934.1 CM039043.1 97.01 True fake: not a misassembly (possible transposable element) 41631058 41631879 41084925 41085746 NC_060934.1 CM039043.1 97.16 True local misassembly 41630523 41633576 41085747 41088802 NC_060934.1 CM039043.1 97.32 True local misassembly 41641837 41642784 41091627 41092573 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = -227718 41415067 41418126 41092574 41095633 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = 212447 41630983 41631586 41096043 41096645 NC_060934.1 CM039043.1 97.25 True local misassembly 41625480 41628616 41096646 41099782 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = -37670 41596158 41597323 41104994 41106158 NC_060934.1 CM039043.1 97.08 True relocation, inconsistency = 50567 41651263 41652878 41109531 41111146 NC_060934.1 CM039043.1 98.21 True relocation, inconsistency = -13576 41640060 41642774 41111904 41114616 NC_060934.1 CM039043.1 97.74 True local misassembly 41649565 41651940 41114617 41116992 NC_060934.1 CM039043.1 98.23 True relocation, inconsistency = -11881 41640060 41646605 41116993 41123536 NC_060934.1 CM039043.1 97.59 True relocation, inconsistency = -217879 41428727 41430083 41123537 41124893 NC_060934.1 CM039043.1 97.96 True local misassembly 41430760 41433062 41125571 41127873 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 206004 41639308 41640821 41128115 41129628 NC_060934.1 CM039043.1 97.56 True indel: indel (<= 5bp) 41640822 41641343 41129630 41130151 NC_060934.1 CM039043.1 97.89 True indel: indel (<= 5bp) 41641458 41642191 41130261 41130994 NC_060934.1 CM039043.1 97.28 True local misassembly 41638798 41643815 41131333 41136345 NC_060934.1 CM039043.1 97.45 True relocation, inconsistency = -293731 41350085 41353670 41136346 41139931 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = -1602330 39751501 39752630 41140092 41141221 NC_060934.1 CM039043.1 98.41 True indel: indel (<= 5bp) 39752632 39753447 41141222 41142037 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 1883849 41638787 41642192 41143528 41146926 NC_060934.1 CM039043.1 97.45 True relocation, inconsistency = 15951 41658144 41659487 41146927 41148271 NC_060934.1 CM039043.1 96.79 True relocation, inconsistency = -28505 41630983 41633801 41148272 41151092 NC_060934.1 CM039043.1 97.48 True relocation, inconsistency = -206339 41430326 41433062 41153956 41156687 NC_060934.1 CM039043.1 97.08 True relocation, inconsistency = 197179 41630983 41632933 41157429 41159379 NC_060934.1 CM039043.1 97.48 True relocation, inconsistency = 22061 41654995 41658697 41159380 41163084 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = -1943237 39715466 39717864 41163090 41165488 NC_060934.1 CM039043.1 97.71 True local misassembly 39718044 39721959 41166009 41169924 NC_060934.1 CM039043.1 97.22 True relocation, inconsistency = 1923893 41645853 41646557 41169925 41170629 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = -528257 41123006 41123747 41175335 41176076 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = -1416683 39708359 39710402 41177371 41179414 NC_060934.1 CM039043.1 97.7 True fake: not a misassembly (possible transposable element) 41654995 41658697 41179747 41183451 NC_060934.1 CM039043.1 97.41 True fake: not a misassembly (possible transposable element) 39715466 39717864 41183457 41185855 NC_060934.1 CM039043.1 97.54 True local misassembly 39718044 39721959 41186376 41190291 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 1923893 41645853 41646557 41190292 41190996 NC_060934.1 CM039043.1 98.32 True fake: not a misassembly (possible transposable element) 41657574 41658743 41191154 41192323 NC_060934.1 CM039043.1 97.3 True fake: not a misassembly (possible transposable element) 41641436 41644726 41192324 41195614 NC_060934.1 CM039043.1 97.14 True relocation, inconsistency = -1767025 39877769 39879872 41195682 41197785 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 1682508 41562671 41565513 41198076 41200918 NC_060934.1 CM039043.1 98.1 True relocation, inconsistency = -444418 41121694 41123747 41201517 41203570 NC_060934.1 CM039043.1 97.91 True relocation, inconsistency = -30887 41095853 41102187 41206563 41212898 NC_060934.1 CM039043.1 97.3 True relocation, inconsistency = 539119 41641352 41643115 41212944 41214707 NC_060934.1 CM039043.1 97.34 True local misassembly 41643454 41644403 41214708 41215657 NC_060934.1 CM039043.1 97.37 True indel: indel (<= 5bp) 41644405 41646347 41215658 41217600 NC_060934.1 CM039043.1 97.94 True indel: indel (<= 5bp) 41646350 41647044 41217601 41218295 NC_060934.1 CM039043.1 98.42 True local misassembly 41649565 41652577 41219458 41222468 NC_060934.1 CM039043.1 98.17 True relocation, inconsistency = -9846 41643454 41645610 41223191 41225347 NC_060934.1 CM039043.1 98.28 True local misassembly 41643454 41646635 41226925 41230106 NC_060934.1 CM039043.1 98.46 True local misassembly 41650032 41652668 41230107 41232743 NC_060934.1 CM039043.1 98.03 True local misassembly 41654995 41658888 41235071 41238966 NC_060934.1 CM039043.1 97.0 True relocation, inconsistency = -95036 41563853 41565225 41238967 41240339 NC_060934.1 CM039043.1 97.68 True indel: indel (<= 5bp) 41565228 41566246 41240340 41241358 NC_060934.1 CM039043.1 98.53 True relocation, inconsistency = 42093 41609601 41612254 41242620 41245273 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -780084 40832788 40834590 41245891 41247693 NC_060934.1 CM039043.1 98.0 True indel: indel (<= 5bp) 40834591 40835406 41247695 41248510 NC_060934.1 CM039043.1 98.16 True indel: indel (<= 5bp) 40835409 40836652 41248511 41249754 NC_060934.1 CM039043.1 97.99 True local misassembly 40836653 40837651 41250093 41251091 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = 806895 41644567 41649349 41251112 41255892 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = -103525 41547102 41550888 41257170 41260956 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = 16461 41569943 41574623 41263550 41268230 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = 66525 41643793 41648608 41270875 41275688 NC_060934.1 CM039043.1 98.21 True relocation, inconsistency = -100812 41547820 41550792 41275712 41278684 NC_060934.1 CM039043.1 98.21 True relocation, inconsistency = -7470 41543323 41547079 41278685 41282441 NC_060934.1 CM039043.1 97.98 True relocation, inconsistency = 110312 41657392 41660216 41282442 41285270 NC_060934.1 CM039043.1 96.75 True relocation, inconsistency = -1939161 39721056 39721959 41285271 41286174 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 1915403 41643803 41645328 41292615 41294140 NC_060934.1 CM039043.1 98.03 True indel: indel (<= 5bp) 41645331 41646827 41294141 41295637 NC_060934.1 CM039043.1 98.8 True local misassembly 41646828 41648387 41295974 41297533 NC_060934.1 CM039043.1 98.59 True relocation, inconsistency = -56339 41592169 41594244 41297654 41299729 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = 49209 41643454 41647925 41299730 41304201 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = -1996874 39654051 39655153 41307201 41308303 NC_060934.1 CM039043.1 97.68 True relocation, inconsistency = 1735378 41390532 41396324 41308304 41314096 NC_060934.1 CM039043.1 97.19 True relocation, inconsistency = 247916 41644241 41646330 41314097 41316184 NC_060934.1 CM039043.1 97.96 True fake: not a misassembly (possible transposable element) 41625632 41628599 41316185 41319150 NC_060934.1 CM039043.1 97.54 True fake: not a misassembly (possible transposable element) 41644361 41646616 41319303 41321558 NC_060934.1 CM039043.1 98.36 True relocation, inconsistency = -121174 41527025 41532141 41323141 41328257 NC_060934.1 CM039043.1 97.17 True relocation, inconsistency = 108280 41640422 41642458 41328258 41330294 NC_060934.1 CM039043.1 97.92 True local misassembly 41640399 41643453 41331630 41334684 NC_060934.1 CM039043.1 97.64 True local misassembly 41643889 41647550 41335798 41339459 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -97415 41550136 41551466 41339460 41340790 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -1834961 39717669 39720940 41341954 41345225 NC_060934.1 CM039043.1 96.92 True relocation, inconsistency = 1909640 41631014 41633240 41345659 41347885 NC_060934.1 CM039043.1 96.77 True relocation, inconsistency = -1923557 39710534 39711579 41348736 41349781 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = -20027 39692165 39693447 41350394 41351676 NC_060934.1 CM039043.1 96.8 True relocation, inconsistency = -34961 39658487 39659505 41351677 41352693 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = 1982952 41643896 41646168 41354132 41356402 NC_060934.1 CM039043.1 98.16 True local misassembly 41643793 41646593 41356403 41359202 NC_060934.1 CM039043.1 98.02 True relocation, inconsistency = -14254 41632340 41636735 41359203 41363598 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = 32908 41669865 41671997 41363820 41365952 NC_060934.1 CM039043.1 98.08 True indel: indel (<= 5bp) 41671998 41674825 41365955 41368782 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = 77004 41753224 41784144 41370177 41401102 NC_060934.1 CM039043.1 96.22 True relocation, inconsistency = -2074173 39710039 39710690 41401170 41401821 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = 1852953 41563684 41564330 41401862 41402508 NC_060934.1 CM039043.1 98.28 True relocation, inconsistency = 60762 41625093 41627600 41402509 41405016 NC_060934.1 CM039043.1 97.83 True relocation, inconsistency = -272013 41355588 41361649 41405017 41411078 NC_060934.1 CM039043.1 97.36 True relocation, inconsistency = 281852 41643793 41645457 41411370 41413034 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = -586293 41059165 41062928 41413035 41416796 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = -1303671 39759258 39759899 41416797 41417438 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = -30536 39729364 39731367 41417439 41419443 NC_060934.1 CM039043.1 97.51 True relocation, inconsistency = 1909638 41643803 41647925 41422241 41426361 NC_060934.1 CM039043.1 97.96 True local misassembly 41643803 41644863 41427671 41428731 NC_060934.1 CM039043.1 97.99 True indel: stretch of mismatches 41644864 41649214 41428732 41433080 NC_060934.1 CM039043.1 98.02 True local misassembly 41644801 41647925 41433081 41436203 NC_060934.1 CM039043.1 98.01 True relocation, inconsistency = -1957835 39691388 39694609 41437501 41440722 NC_060934.1 CM039043.1 97.61 True indel: indel (<= 5bp) 39694610 39695425 41440724 41441539 NC_060934.1 CM039043.1 97.55 True relocation, inconsistency = 1905570 41601306 41602076 41441850 41442620 NC_060934.1 CM039043.1 98.44 True indel: indel (<= 5bp) 41602077 41604762 41442622 41445307 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -171723 41433040 41437448 41445308 41449716 NC_060934.1 CM039043.1 97.51 True relocation, inconsistency = 204985 41642618 41643792 41449901 41451075 NC_060934.1 CM039043.1 96.43 True local misassembly 41643793 41645328 41451415 41452950 NC_060934.1 CM039043.1 97.72 True indel: indel (<= 5bp) 41645331 41647366 41452951 41454986 NC_060934.1 CM039043.1 98.72 True relocation, inconsistency = -1999588 39648086 39648920 41455294 41456127 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 1976172 41625093 41629198 41456128 41460233 NC_060934.1 CM039043.1 97.56 True relocation, inconsistency = 21381 41650580 41651936 41460234 41461590 NC_060934.1 CM039043.1 98.18 True local misassembly 41649565 41651936 41461933 41464304 NC_060934.1 CM039043.1 97.6 True local misassembly 41655005 41659313 41464657 41468968 NC_060934.1 CM039043.1 97.15 True relocation, inconsistency = -1144231 40515083 40516029 41468969 41469915 NC_060934.1 CM039043.1 98.5 True indel: indel (<= 5bp) 40516032 40516561 41469916 41470445 NC_060934.1 CM039043.1 98.87 True local misassembly 40516709 40517210 41470446 41470947 NC_060934.1 CM039043.1 98.09 True relocation, inconsistency = 318328 40835539 40839265 41470948 41474671 NC_060934.1 CM039043.1 97.0 True relocation, inconsistency = 804522 41644567 41648622 41475451 41479502 NC_060934.1 CM039043.1 98.27 True local misassembly 41646585 41648622 41479503 41481538 NC_060934.1 CM039043.1 98.08 True local misassembly 41643803 41648934 41483171 41488300 NC_060934.1 CM039043.1 98.09 True fake: not a misassembly (possible transposable element) 41344002 41346105 41488301 41490404 NC_060934.1 CM039043.1 97.33 True fake: not a misassembly (possible transposable element) 41644587 41648622 41490405 41494436 NC_060934.1 CM039043.1 98.41 True local misassembly 41645566 41647643 41494437 41496514 NC_060934.1 CM039043.1 98.38 True local misassembly 41644587 41648622 41496515 41500548 NC_060934.1 CM039043.1 97.94 True local misassembly 41645566 41648515 41500549 41503496 NC_060934.1 CM039043.1 98.39 True local misassembly 41644440 41648537 41503497 41507592 NC_060934.1 CM039043.1 98.19 True local misassembly 41645481 41646604 41507593 41508716 NC_060934.1 CM039043.1 98.02 True local misassembly 41644567 41648622 41508717 41512764 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = -734105 40914518 40915335 41512765 41513582 NC_060934.1 CM039043.1 98.71 True relocation, inconsistency = -120298 40796154 40798471 41514699 41517016 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = 854400 41657462 41659313 41521607 41523459 NC_060934.1 CM039043.1 97.03 True relocation, inconsistency = -9160 41650328 41651730 41523634 41525034 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = -223989 41427742 41430083 41525035 41527376 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = 114354 41547736 41551466 41530675 41534404 NC_060934.1 CM039043.1 97.83 True relocation, inconsistency = -535052 41016415 41019210 41534405 41537200 NC_060934.1 CM039043.1 98.53 True fake: not a misassembly (possible transposable element) 39818071 39820081 41537847 41539857 NC_060934.1 CM039043.1 97.66 True fake: not a misassembly (possible transposable element) 41020272 41023208 41542338 41545272 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = 620584 41643793 41647761 41545273 41549237 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -124571 41523191 41526692 41549238 41552737 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 115067 41642318 41646635 41553296 41557612 NC_060934.1 CM039043.1 97.61 True local misassembly 41640866 41643190 41557613 41559936 NC_060934.1 CM039043.1 97.63 True fake: not a misassembly (possible transposable element) 41431419 41432827 41559937 41561344 NC_060934.1 CM039043.1 96.86 True fake: not a misassembly (possible transposable element) 41645618 41649206 41561345 41564932 NC_060934.1 CM039043.1 98.19 True local misassembly 41644793 41645597 41564933 41565737 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = -290335 41359888 41360606 41570363 41571081 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = 201749 41562767 41568125 41571493 41576851 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -23422 41544704 41547079 41576852 41579227 NC_060934.1 CM039043.1 97.97 True relocation, inconsistency = 11879 41562332 41566500 41582601 41586768 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 78065 41644566 41646635 41586769 41588809 NC_060934.1 CM039043.1 96.39 True relocation, inconsistency = -570001 41076682 41078953 41588857 41591128 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = 489897 41568866 41572854 41591144 41595103 NC_060934.1 CM039043.1 97.14 True relocation, inconsistency = -219060 41353795 41360604 41595104 41601913 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = 285246 41645851 41647613 41601914 41603676 NC_060934.1 CM039043.1 98.04 True relocation, inconsistency = -1992460 39656183 39657468 41604706 41605991 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = 1972435 41630673 41632933 41606761 41609021 NC_060934.1 CM039043.1 96.49 True relocation, inconsistency = -70263 41562671 41566108 41609022 41612456 NC_060934.1 CM039043.1 97.6 True local misassembly 41568146 41574627 41612457 41618938 NC_060934.1 CM039043.1 97.69 True relocation, inconsistency = 70938 41645566 41646594 41618939 41619967 NC_060934.1 CM039043.1 98.36 True relocation, inconsistency = -626355 41020623 41024017 41620351 41623745 NC_060934.1 CM039043.1 98.47 True relocation, inconsistency = -449991 40574027 40578687 41623746 41628406 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 1065825 41644529 41646575 41628423 41630469 NC_060934.1 CM039043.1 98.58 True relocation, inconsistency = -470553 41176023 41177040 41630470 41631487 NC_060934.1 CM039043.1 97.61 True relocation, inconsistency = -1416014 39761027 39761978 41631488 41632439 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = 1800353 41562332 41565943 41632440 41636049 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = -912746 40657448 40661544 41640300 41644369 NC_060934.1 CM039043.1 97.36 True relocation, inconsistency = 689609 41354558 41360606 41647774 41653793 NC_060934.1 CM039043.1 97.01 True relocation, inconsistency = 267259 41630669 41633887 41656597 41659788 NC_060934.1 CM039043.1 96.03 True relocation, inconsistency = 7467 41641355 41642953 41659789 41661387 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = -222287 41420827 41423561 41661548 41664285 NC_060934.1 CM039043.1 97.41 True relocation, inconsistency = -380640 41042922 41044252 41664286 41665616 NC_060934.1 CM039043.1 98.1 True relocation, inconsistency = -25800 41020623 41023208 41667787 41670372 NC_060934.1 CM039043.1 98.44 True relocation, inconsistency = 620584 41643793 41647925 41670373 41674505 NC_060934.1 CM039043.1 98.02 True relocation, inconsistency = -601915 41046717 41048073 41675212 41676568 NC_060934.1 CM039043.1 97.13 True local misassembly 41048414 41053079 41676569 41681234 NC_060934.1 CM039043.1 98.18 True relocation, inconsistency = 590371 41643793 41647606 41681577 41685390 NC_060934.1 CM039043.1 97.95 True relocation, scaffold gap is present, inconsistency = -21918 41626043 41626826 41685745 41686528 NC_060934.1 CM039043.1 97.69 True relocation, inconsistency = -283553 41343274 41348726 41686529 41691983 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = -299016 41049711 41053079 41691984 41695352 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = -39041 41014433 41021596 41695747 41702908 NC_060934.1 CM039043.1 97.98 True local misassembly 41020623 41023208 41705668 41708253 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 620584 41643793 41647612 41708254 41712073 NC_060934.1 CM039043.1 98.04 True relocation, inconsistency = -293055 41354558 41358849 41712074 41716365 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -526062 40832788 40839265 41716366 41722845 NC_060934.1 CM039043.1 97.56 True relocation, inconsistency = 210416 41049682 41052064 41722846 41725228 NC_060934.1 CM039043.1 98.29 True relocation, inconsistency = 591728 41643793 41645574 41725229 41727010 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = -605988 41039587 41044252 41727011 41731676 NC_060934.1 CM039043.1 98.37 True local misassembly 41046969 41048073 41731677 41732781 NC_060934.1 CM039043.1 97.2 True local misassembly 41048482 41052827 41732849 41737194 NC_060934.1 CM039043.1 98.22 True local misassembly 41048414 41053079 41737195 41741860 NC_060934.1 CM039043.1 98.2 True local misassembly 41048666 41053079 41741861 41746274 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -217205 40835875 40837491 41746275 41747891 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = 804182 41644567 41647623 41750785 41753837 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41648622 41753838 41757887 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = -20026 41635971 41640417 41765262 41769705 NC_060934.1 CM039043.1 97.59 True local misassembly 41644830 41647613 41769706 41772487 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = -1929325 39718289 39719922 41772488 41774121 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = -39376 39681339 39682584 41774914 41776159 NC_060934.1 CM039043.1 97.03 True relocation, inconsistency = 135467 39818791 39819809 41776899 41777917 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 1195334 41015144 41024223 41777918 41786989 NC_060934.1 CM039043.1 98.27 True relocation, inconsistency = 323458 41347682 41348726 41786990 41788034 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = -292224 41056533 41062329 41788065 41793857 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -226716 40835623 40837491 41793867 41795733 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 798410 41636044 41637768 41795876 41797598 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41039587 41044252 41797599 41802260 NC_060934.1 CM039043.1 98.37 True fake: not a misassembly (possible transposable element) 41644808 41647642 41802261 41805095 NC_060934.1 CM039043.1 98.19 True local misassembly 41644586 41648622 41805096 41809126 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -11882 41636741 41639796 41809127 41812179 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -604629 41040301 41044252 41817313 41821260 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 582232 41626485 41627263 41821261 41822039 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = -1932047 39696275 39697504 41823098 41824328 NC_060934.1 CM039043.1 97.32 True relocation, inconsistency = 1134987 40834267 40837634 41826104 41829472 NC_060934.1 CM039043.1 97.57 True relocation, inconsistency = 29352 40867013 40868881 41829499 41831367 NC_060934.1 CM039043.1 98.45 True relocation, inconsistency = 188533 41057604 41062928 41831557 41836877 NC_060934.1 CM039043.1 98.29 True fake: not a misassembly (possible transposable element) 39718878 39719922 41836878 41837922 NC_060934.1 CM039043.1 97.94 True fake: not a misassembly (possible transposable element) 41057552 41062928 41837953 41843327 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = 294257 41357186 41358934 41843328 41845076 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 276759 41636204 41638545 41845587 41847927 NC_060934.1 CM039043.1 97.57 True local misassembly 41636044 41639628 41848142 41851723 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = -623303 41016326 41017954 41851724 41853352 NC_060934.1 CM039043.1 98.56 True indel: indel (<= 5bp) 41017957 41019210 41853353 41854606 NC_060934.1 CM039043.1 98.25 True local misassembly 41015144 41019210 41854616 41858678 NC_060934.1 CM039043.1 98.48 True local misassembly 41015144 41015661 41859705 41860222 NC_060934.1 CM039043.1 97.88 True local misassembly 41016293 41017954 41860512 41862173 NC_060934.1 CM039043.1 98.5 True indel: indel (<= 5bp) 41017957 41019210 41862174 41863427 NC_060934.1 CM039043.1 98.17 True relocation, inconsistency = 613458 41635971 41638545 41866730 41869301 NC_060934.1 CM039043.1 97.36 True fake: not a misassembly (possible transposable element) 41039719 41044252 41869335 41873866 NC_060934.1 CM039043.1 98.52 True fake: not a misassembly (possible transposable element) 41644808 41645883 41873867 41874942 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = -589350 41056534 41062329 41874943 41880734 NC_060934.1 CM039043.1 98.31 True local misassembly 41058254 41062329 41880735 41884806 NC_060934.1 CM039043.1 98.36 True relocation, inconsistency = 582217 41644567 41647586 41884827 41887842 NC_060934.1 CM039043.1 98.34 True fake: not a misassembly (possible transposable element) 41335430 41336581 41890123 41891274 NC_060934.1 CM039043.1 97.69 True fake: not a misassembly (possible transposable element) 41644567 41647440 41891275 41894144 NC_060934.1 CM039043.1 97.88 True relocation, inconsistency = -589010 41058431 41061073 41894145 41896787 NC_060934.1 CM039043.1 98.61 True indel: indel (<= 5bp) 41061076 41061913 41896788 41897625 NC_060934.1 CM039043.1 98.17 True fake: not a misassembly (possible transposable element) 41643793 41645898 41897626 41899731 NC_060934.1 CM039043.1 97.89 True fake: not a misassembly (possible transposable element) 41057568 41062329 41899732 41904491 NC_060934.1 CM039043.1 98.17 True relocation, inconsistency = -47195 41015144 41019210 41904501 41908563 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = 625336 41644567 41645585 41908584 41909600 NC_060934.1 CM039043.1 98.25 True local misassembly 41644567 41648622 41909601 41913652 NC_060934.1 CM039043.1 98.13 True local misassembly 41644567 41648622 41913673 41917718 NC_060934.1 CM039043.1 98.18 True relocation, inconsistency = -633488 41015144 41018200 41917728 41920778 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = 21386 41039587 41043653 41920779 41924841 NC_060934.1 CM039043.1 98.3 True local misassembly 41040597 41041932 41924842 41926175 NC_060934.1 CM039043.1 98.33 True fake: not a misassembly (possible transposable element) 41056533 41062329 41926176 41931966 NC_060934.1 CM039043.1 98.36 True fake: not a misassembly (possible transposable element) 41041616 41043792 41931967 41934139 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = 13241 41057034 41062496 41934140 41939597 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = 580858 41644567 41648934 41940810 41945168 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = -1930344 39718591 39719922 41945169 41946500 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = 1336580 41056533 41060773 41946531 41950769 NC_060934.1 CM039043.1 98.27 True local misassembly 41055679 41062329 41950770 41957410 NC_060934.1 CM039043.1 98.33 True local misassembly 41061311 41062018 41957411 41958116 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -1344049 39717970 39719922 41958117 41960069 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = 1336580 41056533 41062329 41960100 41965892 NC_060934.1 CM039043.1 98.27 True local misassembly 41056533 41062329 41966210 41971998 NC_060934.1 CM039043.1 98.43 True relocation, inconsistency = 584255 41646585 41648622 41971999 41974034 NC_060934.1 CM039043.1 98.1 True relocation, inconsistency = -8486 41643793 41646901 41977691 41980799 NC_060934.1 CM039043.1 98.09 True relocation, inconsistency = -590369 41056533 41062329 41980800 41986605 NC_060934.1 CM039043.1 98.06 True local misassembly 41058254 41062329 41986606 41990673 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = 582217 41644567 41648622 41990694 41994745 NC_060934.1 CM039043.1 97.83 True local misassembly 41645566 41648622 41994746 41997798 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = -841507 40807116 40808059 41997799 41998740 NC_060934.1 CM039043.1 98.65 True relocation, inconsistency = 535893 41343953 41348720 41998741 42003504 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = 176967 41525688 41526350 42003505 42004167 NC_060934.1 CM039043.1 97.79 True local misassembly 41529406 41533913 42004168 42008671 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = -1716129 39818791 39819809 42009678 42010696 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = 1195334 41015144 41019210 42010697 42014759 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = 625336 41644567 41648462 42014780 42018671 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = -593086 41055377 41057007 42018672 42020302 NC_060934.1 CM039043.1 98.67 True local misassembly 41056553 41061083 42021544 42026073 NC_060934.1 CM039043.1 98.59 True relocation, inconsistency = -39384 41021700 41023208 42026074 42027580 NC_060934.1 CM039043.1 98.1 True relocation, inconsistency = 620584 41643793 41646168 42027581 42029953 NC_060934.1 CM039043.1 97.93 True local misassembly 41643793 41648395 42029954 42034556 NC_060934.1 CM039043.1 97.91 True relocation, inconsistency = -10524 41644662 41648462 42041347 42045144 NC_060934.1 CM039043.1 98.18 True relocation, inconsistency = -56339 41592189 41595022 42045210 42048039 NC_060934.1 CM039043.1 97.42 True fake: not a misassembly (possible transposable element) 39695348 39695885 42049527 42050064 NC_060934.1 CM039043.1 97.4 True fake: not a misassembly (possible transposable element) 41599422 41608577 42052102 42061260 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 32246 41640824 41644229 42061261 42064665 NC_060934.1 CM039043.1 97.48 True local misassembly 41641599 41644229 42065090 42067720 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = -289660 41354570 41355366 42067721 42068517 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = -1696687 39661181 39662305 42071019 42072143 NC_060934.1 CM039043.1 97.0 True relocation, inconsistency = 1864490 41526796 41532869 42072144 42078215 NC_060934.1 CM039043.1 97.24 True relocation, inconsistency = -207513 41326304 41328272 42079163 42081130 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = 315453 41644567 41647440 42081972 42084842 NC_060934.1 CM039043.1 98.05 True local misassembly 41644567 41648573 42087739 42091739 NC_060934.1 CM039043.1 98.3 True local misassembly 41644567 41648622 42092828 42096877 NC_060934.1 CM039043.1 98.27 True local misassembly 41644567 41648622 42097917 42101966 NC_060934.1 CM039043.1 98.42 True local misassembly 41645566 41647623 42101967 42104022 NC_060934.1 CM039043.1 98.34 True local misassembly 41644567 41648622 42104023 42108072 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -304595 41344037 41348726 42108082 42112771 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = 297126 41645853 41646639 42112772 42113558 NC_060934.1 CM039043.1 97.89 True fake: not a misassembly (possible transposable element) 41039633 41043237 42113559 42117163 NC_060934.1 CM039043.1 98.1 True fake: not a misassembly (possible transposable element) 41643793 41648573 42117164 42121938 NC_060934.1 CM039043.1 98.08 True local misassembly 41644567 41648622 42123027 42127076 NC_060934.1 CM039043.1 98.3 True local misassembly 41644567 41648622 42127097 42131146 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -13920 41635971 41639796 42132415 42136235 NC_060934.1 CM039043.1 97.86 True local misassembly 41644586 41647623 42137294 42140327 NC_060934.1 CM039043.1 98.32 True local misassembly 41644567 41648326 42140328 42144083 NC_060934.1 CM039043.1 98.42 True relocation, inconsistency = -608026 41040301 41046230 42144084 42150009 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = 297658 41344037 41348726 42150158 42154849 NC_060934.1 CM039043.1 97.55 True relocation, inconsistency = 297126 41645853 41647866 42154850 42156863 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -782638 40867013 40868881 42158648 42160516 NC_060934.1 CM039043.1 98.56 True relocation, inconsistency = 147452 41016334 41017181 42160517 42161364 NC_060934.1 CM039043.1 98.62 True local misassembly 41015144 41023624 42161365 42169841 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = 621941 41645566 41648622 42169842 42172898 NC_060934.1 CM039043.1 97.93 True local misassembly 41644567 41648622 42172919 42176970 NC_060934.1 CM039043.1 98.15 True relocation, inconsistency = -813009 40835623 40837491 42176980 42178846 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = 798410 41636044 41639796 42178989 42182738 NC_060934.1 CM039043.1 97.79 True relocation, inconsistency = -9166 41635971 41639796 42188079 42191899 NC_060934.1 CM039043.1 97.65 True local misassembly 41644567 41648622 42191920 42195969 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = -628055 41020568 41023208 42195970 42198608 NC_060934.1 CM039043.1 98.36 True relocation, inconsistency = 620584 41643793 41647612 42198609 42202428 NC_060934.1 CM039043.1 97.97 True fake: not a misassembly (possible transposable element) 41344037 41346668 42202429 42205060 NC_060934.1 CM039043.1 97.55 True fake: not a misassembly (possible transposable element) 41643793 41648622 42205061 42209890 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = -633488 41015144 41015952 42209900 42210708 NC_060934.1 CM039043.1 98.15 True local misassembly 41016293 41017181 42210709 42211597 NC_060934.1 CM039043.1 98.62 True local misassembly 41015144 41023624 42211598 42220074 NC_060934.1 CM039043.1 98.27 True relocation, inconsistency = 621941 41645566 41648622 42220075 42223131 NC_060934.1 CM039043.1 97.93 True local misassembly 41644567 41648622 42223152 42227203 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -813009 40835623 40837491 42227213 42229079 NC_060934.1 CM039043.1 97.22 True relocation, inconsistency = 798410 41636044 41639796 42229222 42232971 NC_060934.1 CM039043.1 97.87 True fake: not a misassembly (possible transposable element) 41015144 41015952 42235017 42235825 NC_060934.1 CM039043.1 98.89 True fake: not a misassembly (possible transposable element) 41636044 41639796 42236009 42239758 NC_060934.1 CM039043.1 97.82 True local misassembly 41635971 41639796 42242044 42245868 NC_060934.1 CM039043.1 97.47 True local misassembly 41644567 41647440 42245889 42248758 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -589010 41058431 41061073 42248759 42251401 NC_060934.1 CM039043.1 98.65 True indel: indel (<= 5bp) 41061076 41062181 42251402 42252507 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = 573732 41636044 41639796 42252638 42256387 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -1888601 39751205 39753233 42256397 42258423 NC_060934.1 CM039043.1 98.62 True relocation, inconsistency = 1297891 41056533 41058072 42263832 42265371 NC_060934.1 CM039043.1 98.18 True local misassembly 41058413 41061073 42265372 42268032 NC_060934.1 CM039043.1 98.65 True indel: indel (<= 5bp) 41061076 41062722 42268033 42269679 NC_060934.1 CM039043.1 98.11 True local misassembly 41059328 41061913 42269680 42272263 NC_060934.1 CM039043.1 98.44 True relocation, inconsistency = 581879 41643793 41647825 42272264 42276296 NC_060934.1 CM039043.1 98.21 True local misassembly 41644769 41647623 42276297 42279147 NC_060934.1 CM039043.1 98.32 True local misassembly 41644567 41648622 42279148 42283199 NC_060934.1 CM039043.1 98.35 True local misassembly 41644586 41647623 42283239 42286272 NC_060934.1 CM039043.1 98.32 True local misassembly 41644567 41648622 42286273 42290322 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -593424 41058977 41061913 42294101 42297033 NC_060934.1 CM039043.1 98.23 True relocation, inconsistency = 581879 41643793 41646605 42297034 42299846 NC_060934.1 CM039043.1 97.97 True local misassembly 41644568 41648206 42299847 42303485 NC_060934.1 CM039043.1 98.07 True local misassembly 41643793 41648622 42303486 42308311 NC_060934.1 CM039043.1 98.22 True local misassembly 41644567 41648622 42308332 42312381 NC_060934.1 CM039043.1 98.22 True local misassembly 41643793 41647825 42312985 42317017 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = -10863 41636963 41640084 42317018 42320140 NC_060934.1 CM039043.1 97.56 True local misassembly 41641103 41643173 42320141 42322211 NC_060934.1 CM039043.1 97.48 True relocation, inconsistency = -808933 40834267 40837634 42322238 42325606 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = 29352 40867013 40868881 42325633 42327501 NC_060934.1 CM039043.1 98.56 True relocation, inconsistency = 147452 41016334 41017954 42327502 42329122 NC_060934.1 CM039043.1 98.56 True indel: indel (<= 5bp) 41017957 41019210 42329123 42330376 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 625336 41644567 41648622 42330397 42334448 NC_060934.1 CM039043.1 98.27 True relocation, inconsistency = -23756 41625470 41627263 42335052 42336845 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = -224329 41402935 41403952 42336846 42337863 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 240614 41644567 41648622 42337864 42341915 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -813009 40835623 40837491 42341925 42343791 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 178842 41016334 41017954 42343792 42345412 NC_060934.1 CM039043.1 98.56 True indel: indel (<= 5bp) 41017957 41019210 42345413 42346666 NC_060934.1 CM039043.1 98.09 True local misassembly 41015144 41019116 42346676 42350644 NC_060934.1 CM039043.1 98.49 True relocation, inconsistency = -182578 40836539 40837470 42350645 42351574 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 220942 41058413 41061073 42351575 42354235 NC_060934.1 CM039043.1 98.46 True indel: indel (<= 5bp) 41061076 41061838 42354236 42354998 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = -22410 41039719 41043653 42355289 42359221 NC_060934.1 CM039043.1 98.65 True relocation, inconsistency = 598857 41644567 41648462 42361278 42365169 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -590029 41058434 41061073 42365170 42367809 NC_060934.1 CM039043.1 98.42 True indel: indel (<= 5bp) 41061076 41062329 42367810 42369063 NC_060934.1 CM039043.1 98.25 True local misassembly 41057235 41057762 42369064 42369591 NC_060934.1 CM039043.1 98.43 True local misassembly 41058413 41062092 42369900 42373579 NC_060934.1 CM039043.1 98.51 True relocation, inconsistency = 272196 41335430 41336815 42374721 42376106 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = -297663 41039719 41044252 42376673 42381204 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 582232 41626485 41627263 42381205 42381983 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = -572046 41056533 41062329 42383299 42389091 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -1260534 39801796 39802814 42389092 42390106 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = 1236084 41039719 41044252 42390927 42395458 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 13243 41057552 41062928 42395515 42400889 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 581879 41644808 41646593 42400890 42402675 NC_060934.1 CM039043.1 98.04 True relocation, inconsistency = -631450 41015144 41017489 42402676 42405019 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = 39043 41056533 41062329 42405020 42410810 NC_060934.1 CM039043.1 98.21 True relocation, inconsistency = 582217 41644567 41648622 42410831 42414882 NC_060934.1 CM039043.1 98.2 True local misassembly 41645566 41648622 42414883 42417935 NC_060934.1 CM039043.1 98.08 True relocation, inconsistency = -1830858 39818791 39820087 42418962 42420258 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = 1235398 41056533 41062329 42421306 42427096 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 582217 41644567 41647586 42427117 42430132 NC_060934.1 CM039043.1 98.31 True local misassembly 41644567 41648622 42431527 42435580 NC_060934.1 CM039043.1 97.81 True local misassembly 41646585 41647586 42435581 42436582 NC_060934.1 CM039043.1 97.81 True local misassembly 41644567 41648622 42437977 42442028 NC_060934.1 CM039043.1 97.78 True local misassembly 41646585 41647404 42442029 42442848 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -607686 41039719 41044252 42442849 42447380 NC_060934.1 CM039043.1 98.54 True relocation, inconsistency = 600555 41644808 41647623 42447381 42450196 NC_060934.1 CM039043.1 97.99 True local misassembly 41644567 41647920 42450197 42453548 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -591388 41056533 41062329 42453549 42459339 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = -536564 40525775 40526547 42459349 42460121 NC_060934.1 CM039043.1 99.22 True relocation, inconsistency = 1117764 41644567 41648622 42460377 42464426 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = -10863 41637760 41638545 42464427 42465213 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = -1834943 39803634 39805532 42465245 42467143 NC_060934.1 CM039043.1 98.58 True relocation, inconsistency = 1207566 41015144 41019210 42469189 42473253 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = 625336 41644567 41648622 42473274 42477325 NC_060934.1 CM039043.1 98.08 True local misassembly 41644567 41648622 42477346 42481397 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = -7129 41644567 41648622 42484471 42488522 NC_060934.1 CM039043.1 97.88 True relocation, inconsistency = -591388 41057235 41058072 42488523 42489360 NC_060934.1 CM039043.1 98.7 True local misassembly 41058413 41061073 42489361 42492021 NC_060934.1 CM039043.1 98.65 True indel: indel (<= 5bp) 41061076 41062722 42492022 42493668 NC_060934.1 CM039043.1 98.06 True local misassembly 41058309 41062329 42493669 42497687 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 582217 41644567 41646901 42497708 42500040 NC_060934.1 CM039043.1 98.03 True relocation, inconsistency = -590369 41056533 41062329 42500041 42505831 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = 582217 41644567 41648622 42505852 42509901 NC_060934.1 CM039043.1 98.18 True local misassembly 41644567 41648622 42509922 42513971 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = -813009 40835623 40837651 42513981 42516007 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = 798070 41635971 41637057 42516257 42517341 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = -580525 41056533 41062329 42517342 42523132 NC_060934.1 CM039043.1 98.24 True local misassembly 41057235 41062329 42523133 42528221 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = 582217 41644567 41646604 42528242 42530275 NC_060934.1 CM039043.1 98.1 True local misassembly 41644567 41648622 42530276 42534327 NC_060934.1 CM039043.1 98.18 True local misassembly 41645566 41648251 42534328 42537009 NC_060934.1 CM039043.1 98.15 True relocation, inconsistency = -1750058 39898194 39902749 42537010 42541564 NC_060934.1 CM039043.1 98.18 True fake: not a misassembly (possible transposable element) 40143707 40148009 42541565 42545863 NC_060934.1 CM039043.1 98.21 True fake: not a misassembly (possible transposable element) 39901960 39902701 42545864 42546605 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 1738514 41641268 41644229 42546658 42549618 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = -1988046 39656184 39657082 42549619 42550517 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = 1979560 41637497 41640835 42551372 42554710 NC_060934.1 CM039043.1 97.87 True fake: not a misassembly (possible transposable element) 41354570 41355366 42554711 42555507 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 42556464 42559802 NC_060934.1 CM039043.1 97.9 True fake: not a misassembly (possible transposable element) 41354570 41355366 42559803 42560599 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 42561556 42564894 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 42564895 42565691 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 42566648 42569986 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 42569987 42570783 NC_060934.1 CM039043.1 97.53 True fake: not a misassembly (possible transposable element) 41637497 41638204 42571740 42572447 NC_060934.1 CM039043.1 98.73 True indel: stretch of mismatches 41638430 41640834 42572673 42575077 NC_060934.1 CM039043.1 97.63 True local misassembly 41641599 41644229 42575503 42578133 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = -289660 41354570 41355366 42578134 42578930 NC_060934.1 CM039043.1 97.78 True local misassembly 41356934 41357939 42580159 42581164 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = 168144 41526796 41532869 42581877 42587948 NC_060934.1 CM039043.1 97.25 True relocation, inconsistency = -207513 41326304 41328272 42588896 42590863 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = 100967 41429240 41430082 42590864 42591704 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = 214484 41644567 41647440 42591705 42594575 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = -7804 41644567 41648622 42599506 42603555 NC_060934.1 CM039043.1 98.2 True local misassembly 41644567 41648622 42604595 42608644 NC_060934.1 CM039043.1 98.37 True local misassembly 41645566 41647623 42608645 42610700 NC_060934.1 CM039043.1 98.34 True local misassembly 41644567 41648622 42610701 42614748 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -608026 41040597 41044252 42614749 42618402 NC_060934.1 CM039043.1 98.46 True relocation, inconsistency = 13243 41057552 41062329 42618459 42623234 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -195326 40867013 40868881 42623244 42625112 NC_060934.1 CM039043.1 98.88 True relocation, inconsistency = 147452 41016334 41017181 42625113 42625960 NC_060934.1 CM039043.1 98.62 True local misassembly 41015144 41023624 42625961 42634437 NC_060934.1 CM039043.1 98.23 True relocation, inconsistency = 15953 41039587 41043653 42634447 42638505 NC_060934.1 CM039043.1 98.3 True relocation, inconsistency = 600893 41644567 41648622 42638526 42642573 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = -633488 41015144 41015952 42642583 42643391 NC_060934.1 CM039043.1 98.76 True local misassembly 41016293 41017181 42643392 42644280 NC_060934.1 CM039043.1 98.5 True local misassembly 41015144 41019210 42644281 42648343 NC_060934.1 CM039043.1 98.43 True relocation, inconsistency = 624319 41644567 41648622 42649381 42653432 NC_060934.1 CM039043.1 97.71 True local misassembly 41646585 41647422 42653433 42654270 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = -589010 41058413 41061073 42654271 42656931 NC_060934.1 CM039043.1 98.61 True indel: indel (<= 5bp) 41061076 41062181 42656932 42658037 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = 573732 41636044 41636760 42658168 42658884 NC_060934.1 CM039043.1 97.79 True fake: not a misassembly (possible transposable element) 41644567 41648622 42658885 42662936 NC_060934.1 CM039043.1 98.3 True fake: not a misassembly (possible transposable element) 41644567 41648622 42668046 42672097 NC_060934.1 CM039043.1 97.73 True local misassembly 41646585 41647404 42672098 42672917 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -607686 41039719 41043237 42672918 42676434 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = 300036 41343274 41348726 42676435 42681887 NC_060934.1 CM039043.1 97.69 True relocation, inconsistency = 293052 41644567 41648622 42684676 42688725 NC_060934.1 CM039043.1 98.25 True local misassembly 41644567 41648622 42689765 42693814 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = -603273 41049128 41052064 42697593 42700525 NC_060934.1 CM039043.1 98.38 True relocation, inconsistency = 591728 41643793 41646605 42700526 42703338 NC_060934.1 CM039043.1 97.87 True local misassembly 41644568 41648206 42703339 42706977 NC_060934.1 CM039043.1 98.11 True local misassembly 41643793 41648622 42706978 42711803 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = -591388 41057606 41061913 42712175 42716476 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = 500757 41562671 41568125 42716477 42721931 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = 74333 41642459 41643173 42721932 42722646 NC_060934.1 CM039043.1 97.51 True local misassembly 41643793 41647187 42723267 42726661 NC_060934.1 CM039043.1 97.96 True local misassembly 41643793 41647925 42726662 42730794 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -779581 40868345 40868881 42730795 42731331 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = 141682 41015144 41015952 42735912 42736720 NC_060934.1 CM039043.1 98.89 True relocation, inconsistency = 41421 41057604 41062928 42736951 42742271 NC_060934.1 CM039043.1 98.35 True relocation, inconsistency = 563556 41626485 41627262 42742272 42743049 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = 17304 41644567 41647612 42743050 42746095 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = -632469 41015144 41023624 42746096 42754572 NC_060934.1 CM039043.1 97.83 True relocation, inconsistency = 17991 41041616 41043653 42754573 42756608 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = -28519 41015144 41015661 42756618 42757135 NC_060934.1 CM039043.1 97.68 True local misassembly 41016293 41017954 42757425 42759086 NC_060934.1 CM039043.1 98.56 True indel: indel (<= 5bp) 41017957 41019009 42759087 42760139 NC_060934.1 CM039043.1 98.08 True local misassembly 41016293 41017181 42760140 42761028 NC_060934.1 CM039043.1 98.5 True local misassembly 41015144 41019210 42761029 42765091 NC_060934.1 CM039043.1 98.45 True relocation, inconsistency = -182578 40836633 40837491 42765092 42765948 NC_060934.1 CM039043.1 97.27 True relocation, inconsistency = 798410 41636044 41638545 42766091 42768589 NC_060934.1 CM039043.1 97.48 True relocation, inconsistency = -580184 41058413 41061073 42768641 42771301 NC_060934.1 CM039043.1 98.38 True indel: indel (<= 5bp) 41061076 41062329 42771302 42772555 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = -47195 41015858 41022444 42773279 42779859 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = 35988 41058433 41061073 42779860 42782500 NC_060934.1 CM039043.1 98.46 True indel: indel (<= 5bp) 41061076 41062329 42782501 42783754 NC_060934.1 CM039043.1 98.56 True relocation, inconsistency = 580181 41644567 41648462 42785811 42789696 NC_060934.1 CM039043.1 97.61 True local misassembly 41644727 41646261 42789697 42791231 NC_060934.1 CM039043.1 98.41 True local misassembly 41644928 41647440 42791256 42793764 NC_060934.1 CM039043.1 97.97 True local misassembly 41644567 41648421 42794627 42798477 NC_060934.1 CM039043.1 98.18 True local misassembly 41644686 41648622 42798478 42802412 NC_060934.1 CM039043.1 98.15 True local misassembly 41647604 41648462 42802413 42803263 NC_060934.1 CM039043.1 97.92 True local misassembly 41644567 41648462 42804118 42808020 NC_060934.1 CM039043.1 96.92 True relocation, inconsistency = -7810 41644567 41648622 42811935 42815986 NC_060934.1 CM039043.1 97.86 True relocation, inconsistency = -591388 41057235 41058072 42815987 42816824 NC_060934.1 CM039043.1 98.31 True local misassembly 41058413 41061073 42816825 42819485 NC_060934.1 CM039043.1 98.65 True indel: indel (<= 5bp) 41061076 41061913 42819486 42820323 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = 581879 41643793 41646593 42820324 42823124 NC_060934.1 CM039043.1 97.99 True fake: not a misassembly (possible transposable element) 41015144 41019210 42823125 42827189 NC_060934.1 CM039043.1 98.08 True fake: not a misassembly (possible transposable element) 41644567 41648622 42827210 42831259 NC_060934.1 CM039043.1 98.08 True local misassembly 41644567 41648622 42831280 42835331 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = -10863 41637760 41638545 42835332 42836118 NC_060934.1 CM039043.1 97.3 True relocation, inconsistency = -598860 41039719 41044252 42836152 42840683 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = 15281 41059534 41062329 42840684 42843477 NC_060934.1 CM039043.1 98.21 True local misassembly 41056533 41062329 42843795 42849585 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = 580858 41644567 41648622 42850965 42855018 NC_060934.1 CM039043.1 98.05 True local misassembly 41647604 41648622 42855019 42856035 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -591388 41057553 41062181 42856354 42860980 NC_060934.1 CM039043.1 98.12 True local misassembly 41058446 41061073 42860981 42863608 NC_060934.1 CM039043.1 98.72 True indel: indel (<= 5bp) 41061076 41061913 42863609 42864446 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = 581879 41643793 41647920 42864447 42868572 NC_060934.1 CM039043.1 98.01 True relocation, inconsistency = -591388 41056533 41062329 42868573 42874363 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -228075 40835623 40837651 42875732 42877756 NC_060934.1 CM039043.1 97.19 True relocation, inconsistency = 219583 41057553 41062329 42878075 42882849 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = 582217 41644567 41648622 42882870 42886921 NC_060934.1 CM039043.1 98.15 True local misassembly 41644567 41647920 42886942 42890291 NC_060934.1 CM039043.1 98.15 True relocation, inconsistency = -590369 41057552 41058570 42890292 42891310 NC_060934.1 CM039043.1 98.24 True local misassembly 41056533 41062329 42891311 42897101 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = -535207 40527132 40529160 42897111 42899137 NC_060934.1 CM039043.1 98.62 True relocation, inconsistency = 525017 41056533 41060608 42901493 42905564 NC_060934.1 CM039043.1 98.21 True local misassembly 41056533 41058570 42905565 42907600 NC_060934.1 CM039043.1 98.45 True local misassembly 41056533 41062329 42907601 42913395 NC_060934.1 CM039043.1 98.6 True relocation, inconsistency = -22752 41039587 41044252 42913405 42918068 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -1351850 39692403 39693447 42918069 42919113 NC_060934.1 CM039043.1 97.67 True relocation, inconsistency = 1325369 41019558 41024223 42919855 42924518 NC_060934.1 CM039043.1 98.14 True relocation, inconsistency = 602261 41626485 41627263 42924519 42925297 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = -571027 41056533 41062329 42925594 42931401 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = -457807 40604532 40606560 42931411 42933433 NC_060934.1 CM039043.1 98.52 True relocation, inconsistency = 1056307 41662868 41664087 42933434 42934653 NC_060934.1 CM039043.1 96.77 True relocation, inconsistency = -141192 41523056 41523635 42934814 42935393 NC_060934.1 CM039043.1 97.48 True relocation, inconsistency = 120157 41643793 41647825 42935394 42939422 NC_060934.1 CM039043.1 97.89 True fake: not a misassembly (possible transposable element) 41343953 41345649 42940160 42941852 NC_060934.1 CM039043.1 98.02 True fake: not a misassembly (possible transposable element) 41643793 41645588 42941853 42943646 NC_060934.1 CM039043.1 97.77 True relocation, inconsistency = -605988 41039601 41043653 42943647 42947710 NC_060934.1 CM039043.1 97.86 True relocation, inconsistency = 479379 41523033 41523974 42947711 42948652 NC_060934.1 CM039043.1 98.11 True local misassembly 41522958 41524442 42948653 42950135 NC_060934.1 CM039043.1 97.57 True relocation, inconsistency = -467153 41057290 41062329 42950136 42955166 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 582217 41644567 41647612 42955187 42958230 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = -632469 41015144 41019210 42958231 42962293 NC_060934.1 CM039043.1 98.6 True fake: not a misassembly (possible transposable element) 41644567 41645574 42962314 42963319 NC_060934.1 CM039043.1 98.42 True fake: not a misassembly (possible transposable element) 41015144 41019210 42963320 42967382 NC_060934.1 CM039043.1 98.57 True relocation, inconsistency = 319730 41343953 41346668 42972395 42975106 NC_060934.1 CM039043.1 97.82 True local misassembly 41343274 41348726 42975107 42980555 NC_060934.1 CM039043.1 97.69 True local misassembly 41343274 41348720 42980870 42986312 NC_060934.1 CM039043.1 97.72 True relocation, inconsistency = 176967 41525688 41526712 42986313 42987337 NC_060934.1 CM039043.1 97.68 True relocation, inconsistency = -627179 40900299 40901299 42988103 42989103 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = 743267 41644567 41648622 42989104 42993155 NC_060934.1 CM039043.1 98.18 True local misassembly 41644662 41646593 42994969 42996897 NC_060934.1 CM039043.1 98.11 True relocation, inconsistency = -607007 41039587 41043237 42996898 43000546 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 519433 41562671 41567136 43000547 43005010 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -510604 41056533 41062329 43005011 43010802 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = -41762 41020568 41024223 43010803 43014456 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 24442 41048666 41049186 43014457 43014977 NC_060934.1 CM039043.1 98.97 True indel: indel (<= 5bp) 41049189 41051224 43014978 43017013 NC_060934.1 CM039043.1 98.53 True indel: indel (<= 5bp) 41051227 41053079 43017014 43018866 NC_060934.1 CM039043.1 98.38 True local misassembly 41048666 41049186 43018867 43019387 NC_060934.1 CM039043.1 98.97 True indel: indel (<= 5bp) 41049189 41051224 43019388 43021423 NC_060934.1 CM039043.1 98.48 True indel: indel (<= 5bp) 41051227 41052064 43021424 43022261 NC_060934.1 CM039043.1 98.27 True relocation, inconsistency = 291209 41343274 41348726 43022262 43027714 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = -1529659 39820828 39821610 43029475 43030257 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = 1822032 41644567 41648622 43031182 43035233 NC_060934.1 CM039043.1 97.73 True relocation, inconsistency = -235868 41413661 41415492 43036140 43037970 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 225680 41641173 41644229 43037971 43041026 NC_060934.1 CM039043.1 97.45 True relocation, inconsistency = -289660 41354570 41355366 43041027 43041823 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 37331 41393926 41395642 43043052 43044768 NC_060934.1 CM039043.1 97.2 True local misassembly 41399828 41406764 43045557 43052662 NC_060934.1 CM039043.1 95.2 True relocation, inconsistency = -1727061 39680412 39680949 43053371 43053908 NC_060934.1 CM039043.1 97.4 True local misassembly 39681288 39682096 43053909 43054717 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = 1954444 41637497 41640835 43055674 43059012 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = -296787 41344049 41346061 43059013 43061024 NC_060934.1 CM039043.1 97.72 True relocation, inconsistency = -1648149 39700637 39701328 43063749 43064440 NC_060934.1 CM039043.1 97.69 True relocation, inconsistency = 10862 39713452 39714227 43065702 43066477 NC_060934.1 CM039043.1 96.39 True relocation, inconsistency = 19680 39735170 39739313 43067740 43071880 NC_060934.1 CM039043.1 97.2 True relocation, inconsistency = 1690745 41430059 41430687 43071881 43072509 NC_060934.1 CM039043.1 97.3 True relocation, inconsistency = 206679 41637497 41640835 43072640 43075978 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 43075979 43076775 NC_060934.1 CM039043.1 97.53 True fake: not a misassembly (possible transposable element) 41637497 41640835 43077732 43081070 NC_060934.1 CM039043.1 97.75 True fake: not a misassembly (possible transposable element) 41354570 41355366 43081071 43081867 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 43082824 43086162 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41354570 41355366 43086163 43086959 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41637497 41640835 43087916 43091254 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41553318 41553982 43092326 43092990 NC_060934.1 CM039043.1 97.44 True fake: not a misassembly (possible transposable element) 41637497 41640835 43093008 43096346 NC_060934.1 CM039043.1 97.78 True fake: not a misassembly (possible transposable element) 41354570 41355366 43096347 43097143 NC_060934.1 CM039043.1 97.53 True fake: not a misassembly (possible transposable element) 41637497 41640835 43098100 43101438 NC_060934.1 CM039043.1 97.81 True fake: not a misassembly (possible transposable element) 41354570 41355366 43101439 43102235 NC_060934.1 CM039043.1 97.4 True fake: not a misassembly (possible transposable element) 41637497 41640835 43103192 43106530 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -249273 41393269 41395642 43108237 43110610 NC_060934.1 CM039043.1 96.88 True relocation, inconsistency = 129115 41526796 41532869 43112649 43118720 NC_060934.1 CM039043.1 97.2 True relocation, inconsistency = 103868 41637497 41640835 43119480 43122815 NC_060934.1 CM039043.1 97.78 True local misassembly 41637497 41640835 43124569 43127907 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -1988726 39652110 39652906 43127908 43128704 NC_060934.1 CM039043.1 97.65 True local misassembly 39655296 39655833 43131432 43131969 NC_060934.1 CM039043.1 97.03 True local misassembly 39656172 39656980 43131970 43132778 NC_060934.1 CM039043.1 97.78 True local misassembly 39657333 39657870 43133469 43134006 NC_060934.1 CM039043.1 96.47 True local misassembly 39658209 39659019 43134007 43134817 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 35640 39695348 39695885 43135506 43136043 NC_060934.1 CM039043.1 97.4 True relocation, inconsistency = 1939846 41637497 41640835 43137809 43141147 NC_060934.1 CM039043.1 97.84 True fake: not a misassembly (possible transposable element) 41568878 41569674 43141148 43141944 NC_060934.1 CM039043.1 97.61 True fake: not a misassembly (possible transposable element) 41637497 41640835 43142901 43146239 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -1983972 39657446 39658486 43146822 43147862 NC_060934.1 CM039043.1 96.45 True relocation, inconsistency = 50233 39709122 39709930 43148265 43149073 NC_060934.1 CM039043.1 97.16 True local misassembly 39710623 39711572 43149086 43150035 NC_060934.1 CM039043.1 96.11 True relocation, inconsistency = 1928305 41640060 41643077 43150218 43153235 NC_060934.1 CM039043.1 97.15 True relocation, inconsistency = -638237 41004841 41008686 43153236 43157081 NC_060934.1 CM039043.1 98.15 True relocation, inconsistency = 393210 41404292 41405236 43159477 43160421 NC_060934.1 CM039043.1 97.57 True relocation, inconsistency = -68388 41336907 41339211 43160480 43162784 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = 304591 41643803 41647925 43162785 43166905 NC_060934.1 CM039043.1 98.08 True local misassembly 41646907 41649214 43166906 43169213 NC_060934.1 CM039043.1 97.95 True relocation, inconsistency = -600556 41048659 41049186 43169214 43169741 NC_060934.1 CM039043.1 98.45 True indel: indel (<= 5bp) 41049189 41053079 43169742 43173632 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -1354567 39698855 39702951 43173975 43178070 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 1940525 41643803 41647925 43178397 43182517 NC_060934.1 CM039043.1 98.08 True relocation, inconsistency = -552016 41095910 41098469 43182518 43185080 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = -1417701 39680840 39682021 43185152 43186333 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = -35301 39646721 39651397 43186334 43191008 NC_060934.1 CM039043.1 97.56 True relocation, inconsistency = 1869925 41521323 41524503 43191009 43194187 NC_060934.1 CM039043.1 97.43 True relocation, inconsistency = -169839 41354665 41355210 43194188 43194733 NC_060934.1 CM039043.1 96.16 True local misassembly 41355789 41357952 43195310 43197473 NC_060934.1 CM039043.1 97.18 True relocation, inconsistency = 30885 41389883 41396288 43198519 43204921 NC_060934.1 CM039043.1 97.24 True local misassembly 41404239 41407006 43205908 43208680 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = 248765 41655772 41660216 43208681 43213125 NC_060934.1 CM039043.1 97.23 True relocation, inconsistency = -265896 41394617 41397250 43213422 43216055 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = 257419 41654670 41660216 43216056 43221601 NC_060934.1 CM039043.1 97.23 True relocation, inconsistency = -174115 41486398 41493369 43221898 43228866 NC_060934.1 CM039043.1 97.08 True relocation, inconsistency = 161230 41654995 41660797 43229262 43235062 NC_060934.1 CM039043.1 97.16 True local misassembly 41656796 41659833 43235126 43238166 NC_060934.1 CM039043.1 96.68 True relocation, inconsistency = -304247 41355587 41356607 43238167 43239187 NC_060934.1 CM039043.1 97.19 True relocation, inconsistency = 242826 41599436 41606528 43239190 43246284 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -263862 41344051 41348460 43247669 43252079 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = 309683 41658144 41659364 43252080 43253301 NC_060934.1 CM039043.1 97.26 True relocation, inconsistency = -7463 41651960 41654651 43253360 43256050 NC_060934.1 CM039043.1 97.77 True indel: indel (<= 5bp) 41654995 41657143 43256393 43258538 NC_060934.1 CM039043.1 97.44 True indel: indel (<= 5bp) 41657455 41659090 43258851 43260486 NC_060934.1 CM039043.1 97.07 True local misassembly 41659491 41660242 43260550 43261301 NC_060934.1 CM039043.1 97.61 True indel: indel (<= 5bp) 41660243 41662142 43261303 43263202 NC_060934.1 CM039043.1 98.32 True indel: indel (<= 5bp) 41662143 41662956 43263204 43264017 NC_060934.1 CM039043.1 96.69 True relocation, inconsistency = 113295 41776252 41777318 43264018 43265083 NC_060934.1 CM039043.1 97.56 True relocation, inconsistency = -125162 41654995 41657151 43267922 43270076 NC_060934.1 CM039043.1 97.04 True local misassembly 41658415 41659090 43271339 43272014 NC_060934.1 CM039043.1 97.93 True indel: indel (<= 5bp) 41659091 41660242 43272016 43273167 NC_060934.1 CM039043.1 97.74 True indel: indel (<= 5bp) 41660243 41661630 43273169 43274556 NC_060934.1 CM039043.1 99.14 True relocation, inconsistency = -21036 41641080 41642153 43275042 43276115 NC_060934.1 CM039043.1 96.87 True relocation, inconsistency = -11198 41630956 41634669 43276116 43279825 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = -285584 41349086 41349695 43279826 43280435 NC_060934.1 CM039043.1 97.49 True local misassembly 41350872 41351514 43281610 43282251 NC_060934.1 CM039043.1 97.25 True relocation, inconsistency = 41743 41393258 41399357 43282252 43288350 NC_060934.1 CM039043.1 97.08 True relocation, inconsistency = 231287 41630645 41633704 43288351 43291408 NC_060934.1 CM039043.1 96.48 True relocation, inconsistency = -575432 41058309 41062928 43291445 43296064 NC_060934.1 CM039043.1 98.48 True relocation, inconsistency = 387411 41450340 41452718 43296065 43298441 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = -619215 40833504 40838009 43298442 43302948 NC_060934.1 CM039043.1 97.55 True local misassembly 40832921 40838891 43302949 43308919 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = 517916 41356948 41360340 43309060 43312447 NC_060934.1 CM039043.1 97.85 True relocation, inconsistency = -1722145 39638196 39638978 43312448 43313230 NC_060934.1 CM039043.1 95.41 True relocation, inconsistency = 2015199 41654670 41656445 43313723 43315499 NC_060934.1 CM039043.1 96.92 True local misassembly 41655090 41661815 43315500 43322228 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -29519 41632297 41636179 43322229 43326111 NC_060934.1 CM039043.1 98.44 True fake: not a misassembly (possible transposable element) 41673537 41674825 43326493 43327781 NC_060934.1 CM039043.1 98.37 True fake: not a misassembly (possible transposable element) 41632422 41633366 43327782 43328726 NC_060934.1 CM039043.1 95.5 True local misassembly 41633777 41636735 43329478 43332436 NC_060934.1 CM039043.1 97.67 True relocation, inconsistency = 22396 41660243 41662142 43333548 43335447 NC_060934.1 CM039043.1 98.26 True indel: indel (<= 5bp) 41662143 41663169 43335449 43336475 NC_060934.1 CM039043.1 96.88 True local misassembly 41664662 41665511 43337630 43338479 NC_060934.1 CM039043.1 97.53 True indel: indel (<= 5bp) 41665937 41667034 43338907 43340004 NC_060934.1 CM039043.1 98.36 True indel: indel (<= 5bp) 41667037 41667886 43340005 43340854 NC_060934.1 CM039043.1 98.59 True indel: indel (<= 5bp) 41668311 41669657 43341283 43342629 NC_060934.1 CM039043.1 98.74 True local misassembly 41669658 41671997 43343309 43345648 NC_060934.1 CM039043.1 98.42 True indel: indel (<= 5bp) 41671998 41674825 43345651 43348478 NC_060934.1 CM039043.1 98.16 True local misassembly 41676298 41692547 43349614 43365529 NC_060934.1 CM039043.1 96.55 True relocation, inconsistency = 128258 41821049 41823492 43365773 43368216 NC_060934.1 CM039043.1 96.03 True relocation, inconsistency = -43450 41780043 41781996 43368217 43370170 NC_060934.1 CM039043.1 96.98 True indel: indel (<= 5bp) 41781998 41783252 43370171 43371425 NC_060934.1 CM039043.1 97.77 True indel: indel (<= 5bp) 41783612 41785390 43371787 43373565 NC_060934.1 CM039043.1 97.81 True indel: stretch of mismatches 41785550 41786936 43373725 43375111 NC_060934.1 CM039043.1 97.04 True local misassembly 41787277 41788550 43375112 43376385 NC_060934.1 CM039043.1 96.08 True local misassembly 41788551 41790143 43376726 43378318 NC_060934.1 CM039043.1 98.49 True indel: indel (<= 5bp) 41790145 41791039 43378319 43379213 NC_060934.1 CM039043.1 98.1 True fake: not a misassembly (possible transposable element) 41834491 41835760 43379214 43380483 NC_060934.1 CM039043.1 95.43 True fake: not a misassembly (possible transposable element) 41792651 41793823 43380484 43381656 NC_060934.1 CM039043.1 97.78 True indel: indel (<= 5bp) 41793824 41794432 43381658 43382266 NC_060934.1 CM039043.1 99.01 True indel: indel (<= 5bp) 41794434 41795156 43382267 43382989 NC_060934.1 CM039043.1 97.79 True indel: indel (<= 5bp) 41795157 41795702 43382991 43383536 NC_060934.1 CM039043.1 98.35 True indel: indel (<= 5bp) 41795704 41796591 43383537 43384424 NC_060934.1 CM039043.1 95.83 True indel: indel (<= 5bp) 41796593 41797487 43384425 43385319 NC_060934.1 CM039043.1 96.98 True relocation, inconsistency = 42435 41839923 41840655 43385320 43386052 NC_060934.1 CM039043.1 96.18 True local misassembly 41841333 41841869 43386053 43386589 NC_060934.1 CM039043.1 96.46 True relocation, inconsistency = -42771 41799099 41800480 43386590 43387971 NC_060934.1 CM039043.1 98.05 True indel: indel (<= 5bp) 41800481 41801968 43387973 43389460 NC_060934.1 CM039043.1 98.59 True indel: indel (<= 5bp) 41801969 41803301 43389462 43390794 NC_060934.1 CM039043.1 98.05 True indel: indel (<= 5bp) 41803302 41803847 43390796 43391341 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 41803849 41806434 43391342 43393927 NC_060934.1 CM039043.1 96.48 True indel: indel (<= 5bp) 41806436 41807330 43393928 43394822 NC_060934.1 CM039043.1 97.43 True relocation, inconsistency = 42434 41850514 41851033 43395572 43396091 NC_060934.1 CM039043.1 96.92 True indel: stretch of mismatches 41851172 41852948 43396230 43398006 NC_060934.1 CM039043.1 96.57 True local misassembly 41853620 41854514 43398679 43399573 NC_060934.1 CM039043.1 96.87 True indel: indel (<= 5bp) 41854516 41855785 43399574 43400843 NC_060934.1 CM039043.1 95.35 True indel: indel (<= 5bp) 41855787 41857701 43400844 43402758 NC_060934.1 CM039043.1 96.45 True indel: indel (<= 5bp) 41857702 41858371 43402760 43403429 NC_060934.1 CM039043.1 97.61 True indel: indel (<= 5bp) 41858373 41859267 43403430 43404324 NC_060934.1 CM039043.1 96.2 True relocation, inconsistency = -42090 41817178 41818447 43404325 43405594 NC_060934.1 CM039043.1 96.77 True indel: indel (<= 5bp) 41818449 41820799 43405595 43407945 NC_060934.1 CM039043.1 96.55 True relocation, inconsistency = 41752 41862787 41863681 43408181 43409075 NC_060934.1 CM039043.1 96.54 True local misassembly 41863817 41864610 43409550 43410343 NC_060934.1 CM039043.1 97.23 True fake: not a misassembly (possible transposable element) 41823203 41823763 43410346 43410906 NC_060934.1 CM039043.1 97.55 True fake: not a misassembly (possible transposable element) 41864835 41867090 43410907 43413162 NC_060934.1 CM039043.1 96.99 True relocation, inconsistency = -40731 41826598 41827250 43413401 43414053 NC_060934.1 CM039043.1 96.32 True local misassembly 41827251 41827954 43414394 43415097 NC_060934.1 CM039043.1 97.02 True indel: indel (<= 5bp) 41827956 41828630 43415098 43415772 NC_060934.1 CM039043.1 96.89 True local misassembly 41828631 41829966 43416113 43417448 NC_060934.1 CM039043.1 97.31 True fake: not a misassembly (possible transposable element) 41870251 41872414 43417684 43419847 NC_060934.1 CM039043.1 96.67 True fake: not a misassembly (possible transposable element) 41832844 41835056 43419988 43422200 NC_060934.1 CM039043.1 96.97 True local misassembly 41835057 41835847 43422540 43423330 NC_060934.1 CM039043.1 95.7 True indel: indel (<= 5bp) 41835849 41837118 43423331 43424600 NC_060934.1 CM039043.1 96.77 True indel: indel (<= 5bp) 41837120 41837890 43424601 43425371 NC_060934.1 CM039043.1 97.28 True fake: not a misassembly (possible transposable element) 41878071 41880220 43425842 43427991 NC_060934.1 CM039043.1 96.93 True fake: not a misassembly (possible transposable element) 41842008 41844220 43429154 43431366 NC_060934.1 CM039043.1 98.01 True local misassembly 41844221 41845136 43431707 43432622 NC_060934.1 CM039043.1 95.63 True local misassembly 41845996 41848115 43432803 43434922 NC_060934.1 CM039043.1 97.78 True local misassembly 41848371 41849362 43435517 43436508 NC_060934.1 CM039043.1 96.67 True indel: indel (<= 5bp) 41849363 41849943 43436510 43437090 NC_060934.1 CM039043.1 98.45 True local misassembly 41850621 41851171 43437091 43437641 NC_060934.1 CM039043.1 98.19 True indel: indel (<= 5bp) 41851172 41852948 43437643 43439419 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 38362 41891378 41909705 43439487 43458108 NC_060934.1 CM039043.1 97.08 True local misassembly 41914988 41915629 43463729 43464370 NC_060934.1 CM039043.1 98.13 True indel: indel (<= 5bp) 41915630 41917945 43464373 43466688 NC_060934.1 CM039043.1 99.01 True indel: indel (<= 5bp) 41917946 41920998 43466691 43469743 NC_060934.1 CM039043.1 99.15 True indel: indel (<= 5bp) 41920999 41922076 43469745 43470822 NC_060934.1 CM039043.1 99.26 True local misassembly 41924058 42118266 43473821 43668361 NC_060934.1 CM039043.1 99.68 True local misassembly 42123253 42168176 43668362 43713407 NC_060934.1 CM039043.1 99.06 True local misassembly 42168168 42174667 43714441 43720945 NC_060934.1 CM039043.1 99.19 True local misassembly 42176456 42209939 43720946 43754459 NC_060934.1 CM039043.1 99.27 True relocation, inconsistency = 7938 42217878 42219633 43754460 43756220 NC_060934.1 CM039043.1 99.37 True relocation, inconsistency = 12964 42232598 42282419 43756221 43806103 NC_060934.1 CM039043.1 99.0 True local misassembly 42286780 42287659 43806455 43807334 NC_060934.1 CM039043.1 100.0 True indel: indel (<= 5bp) 42287665 42288587 43807335 43808257 NC_060934.1 CM039043.1 99.78 True indel: indel (<= 5bp) 42288593 42292162 43808258 43811827 NC_060934.1 CM039043.1 99.92 True indel: indel (> 5bp) 42292387 42293125 43812017 43812755 NC_060934.1 CM039043.1 99.19 True relocation, inconsistency = -138976 42163691 42164334 43822297 43822940 NC_060934.1 CM039043.1 97.83 True local misassembly 42164628 42165200 43823139 43823711 NC_060934.1 CM039043.1 98.43 True relocation, inconsistency = 125658 42291737 42337725 43824590 43870609 NC_060934.1 CM039043.1 99.01 True local misassembly 42334182 42347447 43870610 43883865 NC_060934.1 CM039043.1 98.66 True local misassembly 42351368 42403042 43883866 43935212 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = 32486 42435529 42550643 43935213 44050248 NC_060934.1 CM039043.1 99.48 True local misassembly 42549991 42561878 44050607 44062494 NC_060934.1 CM039043.1 98.84 True local misassembly 42565991 42599197 44062495 44095398 NC_060934.1 CM039043.1 98.85 True local misassembly 42597101 42599988 44096293 44099180 NC_060934.1 CM039043.1 99.48 True local misassembly 42599989 42614089 44099649 44113749 NC_060934.1 CM039043.1 99.67 True relocation, inconsistency = 152719 42767088 42772331 44114029 44119272 NC_060934.1 CM039043.1 99.47 True local misassembly 42772609 42773201 44119273 44119865 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -136475 42637029 42637882 44120168 44121022 NC_060934.1 CM039043.1 97.78 True relocation, inconsistency = -88048 42549991 42565283 44121179 44136471 NC_060934.1 CM039043.1 99.85 True relocation, inconsistency = 147477 42712761 42716536 44136472 44140225 NC_060934.1 CM039043.1 99.21 True local misassembly 42712500 42784021 44140226 44211493 NC_060934.1 CM039043.1 99.38 True local misassembly 42787901 42792825 44211494 44216418 NC_060934.1 CM039043.1 99.84 True relocation, inconsistency = -11749 42781449 42781972 44216791 44217314 NC_060934.1 CM039043.1 97.9 True local misassembly 42786066 42791737 44217393 44223139 NC_060934.1 CM039043.1 97.89 True local misassembly 42792843 42793958 44224201 44225316 NC_060934.1 CM039043.1 99.87 True local misassembly 42796780 42804061 44225317 44232589 NC_060934.1 CM039043.1 99.4 True relocation, inconsistency = 116593 42920655 42921326 44232590 44233261 NC_060934.1 CM039043.1 99.41 True indel: indel (> 5bp) 42921353 42922374 44233262 44234283 NC_060934.1 CM039043.1 97.55 True local misassembly 42923429 42924531 44234556 44235658 NC_060934.1 CM039043.1 97.19 True indel: indel (<= 5bp) 42924533 42926784 44235659 44237910 NC_060934.1 CM039043.1 98.49 True indel: indel (> 5bp) 42926811 42927429 44237911 44238529 NC_060934.1 CM039043.1 99.03 True indel: indel (<= 5bp) 42927433 42933023 44238530 44244120 NC_060934.1 CM039043.1 98.6 True indel: indel (> 5bp) 42933034 42935796 44244121 44246883 NC_060934.1 CM039043.1 97.39 True local misassembly 42936483 42938217 44247201 44248935 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = -177844 42760484 42761893 44249046 44250455 NC_060934.1 CM039043.1 98.72 True local misassembly 42762234 42762818 44250456 44251040 NC_060934.1 CM039043.1 98.97 True relocation, inconsistency = 50750 42813586 42822374 44251058 44259846 NC_060934.1 CM039043.1 99.85 True local misassembly 42818169 42864244 44259878 44306364 NC_060934.1 CM039043.1 98.58 True local misassembly 42866061 42867075 44306365 44307379 NC_060934.1 CM039043.1 97.87 True relocation, inconsistency = -19367 42847709 42852519 44307380 44312190 NC_060934.1 CM039043.1 99.53 True local misassembly 42857988 42871337 44312191 44325550 NC_060934.1 CM039043.1 98.87 True relocation, scaffold gap is present, inconsistency = -1235383 41636192 41636760 44325788 44326356 NC_060934.1 CM039043.1 98.2 True fake: not a misassembly (possible transposable element) 41644567 41648622 44326357 44330409 NC_060934.1 CM039043.1 98.69 True fake: not a misassembly (possible transposable element) 41644567 41648622 44334505 44338555 NC_060934.1 CM039043.1 98.72 True local misassembly 41645566 41647623 44338556 44340612 NC_060934.1 CM039043.1 98.69 True local misassembly 41644567 41648622 44340613 44344660 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = -7128 41644567 41648622 44347733 44351782 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41647623 44352822 44355874 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 44355875 44359924 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41648622 44359945 44363994 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41648622 44364015 44368063 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 44370122 44374172 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41648622 44376229 44380282 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41648622 44380303 44384348 NC_060934.1 CM039043.1 98.5 True local misassembly 41646585 41647848 44384349 44385610 NC_060934.1 CM039043.1 98.35 True local misassembly 41644567 41648622 44387082 44391135 NC_060934.1 CM039043.1 98.57 True relocation, inconsistency = -7133 41644567 41648622 44394213 44398263 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 44398284 44402334 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 44404393 44408438 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41647623 44408439 44410491 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41647623 44410492 44413540 NC_060934.1 CM039043.1 98.4 True local misassembly 41644567 41648622 44413541 44417591 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41648622 44417612 44421663 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41647623 44421684 44424730 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41648622 44424731 44428776 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41647623 44428777 44430829 NC_060934.1 CM039043.1 98.5 True local misassembly 41644567 41647623 44430830 44433876 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41648622 44433877 44437922 NC_060934.1 CM039043.1 98.52 True local misassembly 41645566 41647623 44437923 44439975 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41646604 44439976 44442006 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41648622 44442007 44446058 NC_060934.1 CM039043.1 98.55 True local misassembly 41644567 41648622 44446079 44450130 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41646604 44450151 44452179 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 44452180 44456231 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648622 44456252 44460297 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41647623 44460318 44463368 NC_060934.1 CM039043.1 98.55 True local misassembly 41644567 41646604 44463369 44465404 NC_060934.1 CM039043.1 98.69 True local misassembly 41644567 41648622 44465405 44469456 NC_060934.1 CM039043.1 98.62 True local misassembly 41645566 41648622 44469457 44472509 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41648622 44472530 44476582 NC_060934.1 CM039043.1 98.64 True local misassembly 41645566 41646604 44476583 44477619 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41648622 44477620 44481671 NC_060934.1 CM039043.1 98.62 True local misassembly 41644567 41648622 44481692 44485743 NC_060934.1 CM039043.1 98.64 True local misassembly 41644567 41648622 44485764 44489815 NC_060934.1 CM039043.1 98.67 True relocation, inconsistency = -7133 41644567 41648622 44492893 44496944 NC_060934.1 CM039043.1 98.52 True local misassembly 41644567 41647995 44498662 44502084 NC_060934.1 CM039043.1 98.31 True local misassembly 41644567 41645585 44502393 44503411 NC_060934.1 CM039043.1 98.29 True local misassembly 41644567 41648622 44503412 44507459 NC_060934.1 CM039043.1 98.25 True relocation, inconsistency = -1952408 39696224 39697502 44507469 44508746 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = 1945278 41644567 41648622 44510533 44514581 NC_060934.1 CM039043.1 98.1 True relocation, inconsistency = -13921 41644567 41646829 44524447 44526707 NC_060934.1 CM039043.1 98.59 True relocation, inconsistency = -7809 41644567 41648622 44532254 44536300 NC_060934.1 CM039043.1 98.5 True local misassembly 41644567 41648622 44536321 44540367 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 44540388 44544434 NC_060934.1 CM039043.1 98.47 True local misassembly 41644567 41648622 44544455 44548501 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = -23407 41644567 41648622 44567853 44571896 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -7126 41644567 41648622 44574967 44579010 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -15274 41644567 41646829 44590229 44592486 NC_060934.1 CM039043.1 98.54 True local misassembly 41644567 41646829 44595996 44598253 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41647848 44598708 44601985 NC_060934.1 CM039043.1 98.48 True local misassembly 41644567 41647830 44602440 44605699 NC_060934.1 CM039043.1 98.57 True local misassembly 41645114 41648622 44605700 44609204 NC_060934.1 CM039043.1 98.49 True local misassembly 41646585 41647848 44609205 44610466 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41647848 44613636 44616913 NC_060934.1 CM039043.1 98.48 True local misassembly 41644567 41647830 44617368 44620627 NC_060934.1 CM039043.1 98.57 True local misassembly 41645114 41648622 44620628 44624130 NC_060934.1 CM039043.1 98.43 True local misassembly 41644587 41646829 44624850 44627090 NC_060934.1 CM039043.1 98.84 True local misassembly 41644567 41646829 44627545 44629802 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41646829 44630257 44632515 NC_060934.1 CM039043.1 98.72 True local misassembly 41644567 41646829 44637044 44639301 NC_060934.1 CM039043.1 98.54 True local misassembly 41644567 41648622 44639756 44643804 NC_060934.1 CM039043.1 98.45 True local misassembly 41644587 41648622 44644524 44648553 NC_060934.1 CM039043.1 98.54 True local misassembly 41644567 41648622 44649253 44653301 NC_060934.1 CM039043.1 98.45 True local misassembly 41644587 41648622 44655038 44659067 NC_060934.1 CM039043.1 98.51 True local misassembly 41644567 41647848 44659767 44663044 NC_060934.1 CM039043.1 98.51 True local misassembly 41644587 41648622 44663519 44667548 NC_060934.1 CM039043.1 98.56 True local misassembly 41645114 41646829 44667776 44669487 NC_060934.1 CM039043.1 98.6 True local misassembly 41644587 41647848 44669962 44673219 NC_060934.1 CM039043.1 98.53 True local misassembly 41644567 41647848 44673672 44676949 NC_060934.1 CM039043.1 98.48 True local misassembly 41644587 41647848 44677424 44680681 NC_060934.1 CM039043.1 98.47 True local misassembly 41644587 41646829 44681156 44683396 NC_060934.1 CM039043.1 98.84 True local misassembly 41644567 41646829 44683851 44686108 NC_060934.1 CM039043.1 98.67 True relocation, inconsistency = -1995175 39652014 39653032 44686468 44687486 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = 1894703 41547736 41550888 44687487 44690639 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -1867539 39697497 39698680 44704787 44705970 NC_060934.1 CM039043.1 97.21 True local misassembly 39699534 39704752 44706483 44711699 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = 1898784 41604419 41605536 44712582 44713699 NC_060934.1 CM039043.1 97.59 True relocation, inconsistency = -1871287 39734250 39742537 44713700 44721989 NC_060934.1 CM039043.1 97.25 True relocation, inconsistency = 1825128 41568146 41571433 44722470 44725757 NC_060934.1 CM039043.1 97.45 True relocation, inconsistency = -217024 41354558 41356675 44725906 44728023 NC_060934.1 CM039043.1 97.74 True local misassembly 41354300 41360606 44728024 44734328 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = -1641023 39719910 39721959 44734655 44736704 NC_060934.1 CM039043.1 97.41 True relocation, inconsistency = 1902175 41625486 41627263 44738056 44739833 NC_060934.1 CM039043.1 97.19 True relocation, inconsistency = -86221 41542756 41548071 44741547 44746860 NC_060934.1 CM039043.1 97.55 True relocation, inconsistency = -1788135 39759937 39760716 44746861 44747639 NC_060934.1 CM039043.1 98.4 True relocation, inconsistency = 1889962 41651941 41653042 44748902 44750003 NC_060934.1 CM039043.1 98.09 True relocation, inconsistency = -27828 41625215 41629183 44750004 44753971 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = -1974812 39655409 39657106 44755009 44756706 NC_060934.1 CM039043.1 97.51 True relocation, inconsistency = 1905225 41562332 41567889 44756707 44762264 NC_060934.1 CM039043.1 97.95 True relocation, inconsistency = -211252 41356638 41360606 44762265 44766231 NC_060934.1 CM039043.1 97.68 True relocation, inconsistency = 264547 41625470 41627251 44766548 44768329 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = -17651 41609601 41612254 44768330 44770981 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -550657 41061598 41062928 44770982 44772312 NC_060934.1 CM039043.1 98.17 True relocation, inconsistency = 597483 41662160 41664243 44774061 44776143 NC_060934.1 CM039043.1 96.83 True relocation, inconsistency = -1902171 39762073 39762754 44776144 44776825 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -26811 39737555 39739595 44778437 44780477 NC_060934.1 CM039043.1 97.01 True relocation, inconsistency = 1869252 41609201 41612254 44780831 44783877 NC_060934.1 CM039043.1 97.28 True relocation, inconsistency = 31222 41643793 41646616 44784194 44787017 NC_060934.1 CM039043.1 98.05 True local misassembly 41644241 41646436 44787018 44789213 NC_060934.1 CM039043.1 98.34 True relocation, inconsistency = -1911340 39735508 39737842 44789625 44791958 NC_060934.1 CM039043.1 97.17 True relocation, inconsistency = 1106475 40845342 40848688 44792983 44796330 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = 451739 41300428 41302623 44796331 44798525 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -1560591 39742033 39742634 44798526 44799127 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = 1834970 41577605 41580939 44799128 44802462 NC_060934.1 CM039043.1 97.99 True relocation, inconsistency = -280490 41300450 41302623 44802463 44804635 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -1540570 39762054 39762655 44804636 44805237 NC_060934.1 CM039043.1 98.13 True fake: not a misassembly (possible transposable element) 41577605 41580939 44805238 44808572 NC_060934.1 CM039043.1 97.96 True fake: not a misassembly (possible transposable element) 39760992 39762754 44809684 44811446 NC_060934.1 CM039043.1 98.13 True relocation, inconsistency = -26811 39737555 39739595 44813058 44815098 NC_060934.1 CM039043.1 96.96 True relocation, inconsistency = 1905231 41645583 41649587 44815855 44819859 NC_060934.1 CM039043.1 97.9 True relocation, inconsistency = -1957838 39692281 39695483 44820391 44823594 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = 1693969 41389864 41396281 44824006 44830421 NC_060934.1 CM039043.1 97.3 True local misassembly 41391221 41395312 44830452 44834540 NC_060934.1 CM039043.1 97.21 True relocation, inconsistency = -1733338 39662568 39666158 44835134 44838722 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = 1966325 41644567 41646829 44850806 44853063 NC_060934.1 CM039043.1 98.59 True local misassembly 41644567 41646829 44855554 44857811 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41647848 44858266 44861543 NC_060934.1 CM039043.1 98.51 True local misassembly 41644587 41647848 44862018 44865275 NC_060934.1 CM039043.1 98.65 True local misassembly 41644587 41647848 44865750 44869007 NC_060934.1 CM039043.1 98.41 True local misassembly 41644587 41646829 44869482 44871722 NC_060934.1 CM039043.1 98.84 True local misassembly 41644567 41647848 44872177 44875451 NC_060934.1 CM039043.1 98.42 True local misassembly 41644567 41648622 44877940 44881989 NC_060934.1 CM039043.1 98.55 True relocation, inconsistency = -583918 41066750 41068372 44884035 44885655 NC_060934.1 CM039043.1 97.72 True relocation, inconsistency = 575430 41643803 41647925 44885656 44889778 NC_060934.1 CM039043.1 98.06 True fake: not a misassembly (possible transposable element) 39694501 39695483 44889779 44890762 NC_060934.1 CM039043.1 97.92 True fake: not a misassembly (possible transposable element) 41644567 41646829 44891513 44893771 NC_060934.1 CM039043.1 98.37 True local misassembly 41644567 41646829 44896262 44898519 NC_060934.1 CM039043.1 98.45 True local misassembly 41644567 41647848 44898974 44902251 NC_060934.1 CM039043.1 98.51 True local misassembly 41644587 41647848 44902726 44905983 NC_060934.1 CM039043.1 98.65 True local misassembly 41644587 41647848 44906458 44909715 NC_060934.1 CM039043.1 98.44 True local misassembly 41644587 41646829 44910190 44912430 NC_060934.1 CM039043.1 98.84 True local misassembly 41644567 41646829 44912885 44915142 NC_060934.1 CM039043.1 98.67 True local misassembly 41644567 41648622 44917631 44921680 NC_060934.1 CM039043.1 98.52 True relocation, inconsistency = -583918 41066750 41068372 44923726 44925346 NC_060934.1 CM039043.1 97.72 True fake: not a misassembly (possible transposable element) 41643803 41647925 44925347 44929469 NC_060934.1 CM039043.1 98.04 True fake: not a misassembly (possible transposable element) 41067063 41068372 44929470 44930777 NC_060934.1 CM039043.1 97.72 True relocation, inconsistency = 575430 41643803 41647925 44930778 44934900 NC_060934.1 CM039043.1 98.08 True local misassembly 41644567 41648622 44936637 44940688 NC_060934.1 CM039043.1 98.59 True local misassembly 41646585 41648622 44940689 44942724 NC_060934.1 CM039043.1 98.62 True relocation, inconsistency = -582899 41066750 41068372 44943751 44945371 NC_060934.1 CM039043.1 97.72 True relocation, inconsistency = 575430 41643803 41647925 44945372 44949494 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = -1953425 39694501 39695483 44949495 44950478 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = 22066 39719900 39721959 44952829 44954888 NC_060934.1 CM039043.1 97.09 True relocation, inconsistency = 1918123 41640399 41642458 44955205 44957264 NC_060934.1 CM039043.1 97.38 True relocation, inconsistency = -568643 41073816 41074773 44957265 44958222 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = -1348803 39725971 39727755 44958223 44960006 NC_060934.1 CM039043.1 97.37 True local misassembly 39728348 39729161 44960600 44961413 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = 14589 39745013 39748307 44962676 44965967 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = -53284 39696027 39696645 44966971 44967589 NC_060934.1 CM039043.1 98.71 True indel: indel (<= 5bp) 39696646 39697506 44967591 44968451 NC_060934.1 CM039043.1 97.1 True local misassembly 39697507 39698680 44968791 44969964 NC_060934.1 CM039043.1 97.79 True relocation, inconsistency = 1961560 41662160 41664085 44971884 44973809 NC_060934.1 CM039043.1 96.73 True relocation, inconsistency = -868988 40796143 40798619 44974855 44977331 NC_060934.1 CM039043.1 97.74 True relocation, inconsistency = 220581 41020623 41024216 44978754 44982347 NC_060934.1 CM039043.1 98.16 True relocation, inconsistency = 620584 41644801 41646349 44982348 44983894 NC_060934.1 CM039043.1 97.93 True fake: not a misassembly (possible transposable element) 39705145 39708015 44983895 44986765 NC_060934.1 CM039043.1 97.77 True fake: not a misassembly (possible transposable element) 41643454 41644229 44986770 44987544 NC_060934.1 CM039043.1 98.2 True relocation, inconsistency = -1935775 39709340 39710832 44988430 44989922 NC_060934.1 CM039043.1 97.05 True local misassembly 39711641 39712754 44991411 44992524 NC_060934.1 CM039043.1 97.58 True local misassembly 39713434 39714227 44992525 44993318 NC_060934.1 CM039043.1 97.86 True relocation, inconsistency = 1845824 41560634 41562331 44993901 44995598 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -1819355 39742977 39748307 44995599 45000928 NC_060934.1 CM039043.1 97.15 True relocation, inconsistency = 1890973 41640060 41642191 45001708 45003839 NC_060934.1 CM039043.1 97.94 True local misassembly 41642192 41644229 45004178 45006215 NC_060934.1 CM039043.1 97.6 True fake: not a misassembly (possible transposable element) 39760960 39761978 45007477 45008495 NC_060934.1 CM039043.1 98.32 True fake: not a misassembly (possible transposable element) 41643454 41646635 45008496 45011677 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -79423 41568146 41574627 45012611 45019090 NC_060934.1 CM039043.1 97.72 True fake: not a misassembly (possible transposable element) 40510164 40513871 45019440 45023145 NC_060934.1 CM039043.1 98.0 True fake: not a misassembly (possible transposable element) 41577758 41580939 45023576 45026757 NC_060934.1 CM039043.1 98.02 True relocation, inconsistency = -1821059 39760992 39762754 45027869 45029631 NC_060934.1 CM039043.1 98.07 True relocation, inconsistency = -26811 39737555 39739595 45031243 45033283 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = -76701 39664237 39666709 45034626 45037098 NC_060934.1 CM039043.1 97.21 True relocation, inconsistency = 69234 39737555 39739595 45038710 45040750 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = 1905231 41645583 41649309 45041507 45045233 NC_060934.1 CM039043.1 97.95 True relocation, inconsistency = -30883 41618427 41622848 45045234 45049655 NC_060934.1 CM039043.1 97.76 True relocation, inconsistency = -26811 41596623 41597914 45050241 45051532 NC_060934.1 CM039043.1 97.6 True indel: indel (<= 5bp) 41597915 41600112 45051534 45053731 NC_060934.1 CM039043.1 97.6 True relocation, inconsistency = 54979 41655092 41659833 45053732 45058472 NC_060934.1 CM039043.1 97.03 True local misassembly 41657124 41659497 45058473 45060847 NC_060934.1 CM039043.1 97.07 True local misassembly 41657212 41658477 45060936 45062202 NC_060934.1 CM039043.1 96.35 True relocation, inconsistency = -208382 41450096 41454500 45062203 45066605 NC_060934.1 CM039043.1 97.43 True relocation, inconsistency = 177501 41632002 41633998 45066606 45068601 NC_060934.1 CM039043.1 97.44 True fake: not a misassembly (possible transposable element) 41450088 41454491 45069316 45073718 NC_060934.1 CM039043.1 97.25 True fake: not a misassembly (possible transposable element) 41633350 41633998 45073719 45074367 NC_060934.1 CM039043.1 97.5 True local misassembly 41629620 41630563 45075754 45076697 NC_060934.1 CM039043.1 98.52 True local misassembly 41631715 41633998 45077851 45080133 NC_060934.1 CM039043.1 97.55 True relocation, inconsistency = -195143 41438912 41442612 45080190 45083890 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = -22051 41420583 41421729 45083912 45085058 NC_060934.1 CM039043.1 96.51 True indel: indel (<= 5bp) 41421730 41422475 45085061 45085806 NC_060934.1 CM039043.1 96.78 True indel: indel (<= 5bp) 41422476 41423283 45085808 45086615 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = -7464 41415820 41418662 45086616 45089454 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = 17306 41435969 41436736 45089455 45090221 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = 13229 41449966 41452393 45090222 45092644 NC_060934.1 CM039043.1 97.17 True relocation, inconsistency = 202276 41654670 41659802 45092645 45097781 NC_060934.1 CM039043.1 96.91 True relocation, inconsistency = -411826 41248077 41254117 45097882 45103921 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = 404026 41658144 41659361 45103922 45105139 NC_060934.1 CM039043.1 96.88 True relocation, inconsistency = -228060 41431442 41432830 45105280 45106667 NC_060934.1 CM039043.1 97.43 True fake: not a misassembly (possible transposable element) 39761090 39762903 45106668 45108481 NC_060934.1 CM039043.1 97.52 True fake: not a misassembly (possible transposable element) 41430810 41432021 45110754 45111965 NC_060934.1 CM039043.1 97.49 True relocation, inconsistency = 222973 41654995 41659930 45111966 45116905 NC_060934.1 CM039043.1 97.09 True relocation, inconsistency = -244004 41415927 41418785 45116906 45119763 NC_060934.1 CM039043.1 97.63 True fake: not a misassembly (possible transposable element) 41632256 41634087 45120447 45122278 NC_060934.1 CM039043.1 97.65 True fake: not a misassembly (possible transposable element) 41421730 41422475 45122707 45123452 NC_060934.1 CM039043.1 96.65 True indel: indel (<= 5bp) 41422476 41423283 45123454 45124261 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = -7464 41415820 41418662 45124262 45127100 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = 30536 41449966 41452393 45127868 45130290 NC_060934.1 CM039043.1 97.17 True relocation, inconsistency = 202276 41654670 41659802 45130291 45135427 NC_060934.1 CM039043.1 96.91 True relocation, inconsistency = -411826 41248077 41254117 45135528 45141567 NC_060934.1 CM039043.1 98.06 True relocation, inconsistency = 181396 41435514 41436528 45141568 45142582 NC_060934.1 CM039043.1 97.68 True relocation, inconsistency = 218561 41655090 41659157 45142583 45146652 NC_060934.1 CM039043.1 96.86 True local misassembly 41655090 41659063 45146653 45150627 NC_060934.1 CM039043.1 96.96 True relocation, inconsistency = -265901 41393163 41399357 45150628 45156820 NC_060934.1 CM039043.1 97.3 True relocation, inconsistency = 231287 41630645 41633184 45156821 45159356 NC_060934.1 CM039043.1 96.36 True relocation, inconsistency = 50540 41684214 41686015 45159846 45161647 NC_060934.1 CM039043.1 97.61 True local misassembly 41691105 41691851 45161648 45162394 NC_060934.1 CM039043.1 98.26 True indel: indel (<= 5bp) 41691852 41697914 45162396 45168458 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = -31543 41667010 41667839 45169097 45169926 NC_060934.1 CM039043.1 97.71 True indel: indel (<= 5bp) 41667887 41669767 45169976 45171856 NC_060934.1 CM039043.1 97.71 True local misassembly 41671464 41671997 45171857 45172390 NC_060934.1 CM039043.1 98.46 True indel: indel (<= 5bp) 41671998 41673050 45172393 45173445 NC_060934.1 CM039043.1 97.25 True local misassembly 41670701 41671997 45173467 45174763 NC_060934.1 CM039043.1 98.54 True indel: indel (<= 5bp) 41671998 41675989 45174766 45178757 NC_060934.1 CM039043.1 98.47 True local misassembly 41677684 41678672 45178758 45179746 NC_060934.1 CM039043.1 98.51 True indel: indel (<= 5bp) 41678673 41680813 45179748 45181888 NC_060934.1 CM039043.1 98.32 True indel: indel (<= 5bp) 41680814 41683419 45181891 45184496 NC_060934.1 CM039043.1 98.66 True indel: indel (<= 5bp) 41683420 41693740 45184498 45194818 NC_060934.1 CM039043.1 98.95 True indel: indel (<= 5bp) 41693764 41699810 45194840 45200886 NC_060934.1 CM039043.1 98.73 True indel: indel (<= 5bp) 41699811 41700454 45200889 45201532 NC_060934.1 CM039043.1 97.67 True local misassembly 41693671 41698490 45201533 45206352 NC_060934.1 CM039043.1 98.59 True indel: indel (<= 5bp) 41698514 41699810 45206374 45207670 NC_060934.1 CM039043.1 98.46 True indel: indel (<= 5bp) 41699811 41702416 45207673 45210278 NC_060934.1 CM039043.1 98.31 True indel: indel (<= 5bp) 41702417 41703237 45210280 45211100 NC_060934.1 CM039043.1 98.05 True indel: indel (<= 5bp) 41703261 41711248 45211122 45219109 NC_060934.1 CM039043.1 98.89 True local misassembly 41711926 41716430 45219110 45223614 NC_060934.1 CM039043.1 98.27 True indel: indel (<= 5bp) 41716431 41718292 45223617 45225478 NC_060934.1 CM039043.1 98.17 True local misassembly 41721345 41722100 45225479 45226234 NC_060934.1 CM039043.1 98.94 True local misassembly 41722441 41729025 45226235 45232819 NC_060934.1 CM039043.1 98.68 True indel: indel (<= 5bp) 41729026 41736096 45232821 45239891 NC_060934.1 CM039043.1 98.68 True indel: indel (<= 5bp) 41736098 41738698 45239892 45242492 NC_060934.1 CM039043.1 98.81 True relocation, inconsistency = 39347 41779231 41780040 45243678 45244487 NC_060934.1 CM039043.1 96.3 True indel: indel (<= 5bp) 41780043 41781836 45244488 45246281 NC_060934.1 CM039043.1 96.66 True local misassembly 41782177 41783252 45246282 45247357 NC_060934.1 CM039043.1 96.28 True indel: indel (<= 5bp) 41783612 41784144 45247719 45248251 NC_060934.1 CM039043.1 99.06 True relocation, inconsistency = -2074173 39710039 39710690 45248319 45248970 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 1810524 41521261 41524674 45249017 45252432 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = 115747 41640422 41641350 45252433 45253361 NC_060934.1 CM039043.1 97.65 True indel: indel (<= 5bp) 41641352 41643115 45253362 45255125 NC_060934.1 CM039043.1 97.45 True local misassembly 41643454 41645565 45255126 45257237 NC_060934.1 CM039043.1 98.39 True local misassembly 41639797 41640835 45257238 45258276 NC_060934.1 CM039043.1 98.09 True relocation, inconsistency = 142132 41784443 41785390 45259752 45260699 NC_060934.1 CM039043.1 97.47 True indel: indel (<= 5bp) 41785391 41786852 45260701 45262162 NC_060934.1 CM039043.1 97.74 True local misassembly 41787193 41789917 45262163 45264887 NC_060934.1 CM039043.1 97.83 True local misassembly 41790258 41791884 45264888 45266514 NC_060934.1 CM039043.1 99.02 True indel: stretch of mismatches 41792336 41792940 45266966 45267570 NC_060934.1 CM039043.1 97.19 True local misassembly 41793823 41795156 45268113 45269446 NC_060934.1 CM039043.1 97.83 True indel: indel (<= 5bp) 41795157 41797057 45269448 45271348 NC_060934.1 CM039043.1 98.21 True relocation, inconsistency = -2087072 39710039 39710690 45271402 45272053 NC_060934.1 CM039043.1 98.31 True relocation, inconsistency = 1932038 41643454 41645610 45272779 45274935 NC_060934.1 CM039043.1 98.47 True local misassembly 41642192 41644229 45275249 45277286 NC_060934.1 CM039043.1 97.94 True fake: not a misassembly (possible transposable element) 39761056 39762007 45277287 45278238 NC_060934.1 CM039043.1 97.72 True fake: not a misassembly (possible transposable element) 41640286 41642373 45278436 45280523 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = 147565 41789949 41790615 45280534 45281200 NC_060934.1 CM039043.1 99.1 True relocation, inconsistency = -2131537 39659129 39659780 45281251 45281902 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = 1762697 41422521 41425910 45281946 45285335 NC_060934.1 CM039043.1 97.61 True relocation, inconsistency = 216522 41642433 41643115 45285336 45286018 NC_060934.1 CM039043.1 98.3 True local misassembly 41640060 41641350 45286019 45287309 NC_060934.1 CM039043.1 98.3 True indel: indel (<= 5bp) 41641352 41643115 45287310 45289073 NC_060934.1 CM039043.1 97.45 True local misassembly 41643454 41645610 45289074 45291230 NC_060934.1 CM039043.1 98.42 True local misassembly 41642192 41644217 45291544 45293569 NC_060934.1 CM039043.1 97.84 True relocation, inconsistency = -242652 41401566 41406137 45293570 45298142 NC_060934.1 CM039043.1 97.4 True relocation, inconsistency = 383768 41789949 41790615 45298186 45298852 NC_060934.1 CM039043.1 99.1 True relocation, inconsistency = -2030740 39759903 39760577 45298880 45299554 NC_060934.1 CM039043.1 98.81 True relocation, inconsistency = 1736879 41499084 41500893 45301182 45302991 NC_060934.1 CM039043.1 96.8 True local misassembly 41500894 41501696 45303331 45304133 NC_060934.1 CM039043.1 96.76 True relocation, inconsistency = -1742313 39759903 39760577 45304653 45305327 NC_060934.1 CM039043.1 98.96 True relocation, inconsistency = 1640182 41401566 41406137 45306134 45310706 NC_060934.1 CM039043.1 97.4 True relocation, inconsistency = 383768 41789949 41790615 45310750 45311416 NC_060934.1 CM039043.1 98.95 True relocation, inconsistency = -148586 41643454 41645585 45312841 45314972 NC_060934.1 CM039043.1 98.41 True local misassembly 41645586 41646509 45315311 45316234 NC_060934.1 CM039043.1 98.82 True local misassembly 41640060 41641350 45316235 45317525 NC_060934.1 CM039043.1 98.22 True indel: indel (<= 5bp) 41641352 41643115 45317526 45319289 NC_060934.1 CM039043.1 97.51 True local misassembly 41643454 41645610 45319290 45321446 NC_060934.1 CM039043.1 98.38 True local misassembly 41642192 41644217 45321760 45323785 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -242652 41401566 41407270 45323786 45329484 NC_060934.1 CM039043.1 97.16 True relocation, inconsistency = -1715860 39691411 39695434 45329485 45333507 NC_060934.1 CM039043.1 97.13 True relocation, inconsistency = 1946975 41642410 41643115 45333508 45334213 NC_060934.1 CM039043.1 97.64 True local misassembly 41643454 41645244 45334214 45336004 NC_060934.1 CM039043.1 98.56 True relocation, inconsistency = -240953 41404292 41406908 45336005 45338626 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = 155423 41562332 41565949 45338627 45342241 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = -1825807 39740939 39742721 45343038 45344820 NC_060934.1 CM039043.1 98.05 True relocation, inconsistency = 1658844 41401566 41407416 45344821 45350676 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = 239601 41647018 41647623 45350677 45351282 NC_060934.1 CM039043.1 98.42 True local misassembly 41647624 41648462 45351621 45352459 NC_060934.1 CM039043.1 98.09 True relocation, inconsistency = -589346 41059165 41062928 45352508 45356265 NC_060934.1 CM039043.1 97.93 True relocation, inconsistency = 338208 41402839 41406255 45357968 45361383 NC_060934.1 CM039043.1 97.4 True relocation, inconsistency = -1665294 39740962 39742733 45361384 45363155 NC_060934.1 CM039043.1 97.99 True local misassembly 39743316 39747124 45363738 45367547 NC_060934.1 CM039043.1 97.06 True relocation, inconsistency = 1643398 41390532 41396343 45367557 45373368 NC_060934.1 CM039043.1 97.28 True relocation, inconsistency = 259118 41655462 41658721 45373369 45376630 NC_060934.1 CM039043.1 96.89 True relocation, inconsistency = -18666 41640060 41640787 45376635 45377362 NC_060934.1 CM039043.1 98.35 True local misassembly 41640060 41642191 45377993 45380124 NC_060934.1 CM039043.1 97.94 True local misassembly 41642192 41645585 45380463 45383856 NC_060934.1 CM039043.1 98.17 True local misassembly 41642192 41643928 45384195 45385931 NC_060934.1 CM039043.1 98.04 True local misassembly 41640060 41643815 45386476 45390231 NC_060934.1 CM039043.1 97.58 True fake: not a misassembly (possible transposable element) 41431706 41433062 45390232 45391588 NC_060934.1 CM039043.1 97.57 True fake: not a misassembly (possible transposable element) 41640060 41642573 45392246 45394759 NC_060934.1 CM039043.1 97.85 True indel: indel (<= 5bp) 41642575 41643115 45394760 45395300 NC_060934.1 CM039043.1 98.15 True local misassembly 41643454 41645364 45395301 45397211 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -217879 41427486 41431068 45397212 45400794 NC_060934.1 CM039043.1 97.43 True relocation, inconsistency = -1688368 39743316 39747124 45401410 45405219 NC_060934.1 CM039043.1 97.09 True relocation, inconsistency = 1817319 41564444 41565010 45405220 45405786 NC_060934.1 CM039043.1 98.02 True relocation, inconsistency = -1804426 39761110 39761978 45406312 45407180 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 1878081 41640060 41643815 45407181 45410936 NC_060934.1 CM039043.1 97.74 True fake: not a misassembly (possible transposable element) 39743316 39747124 45411253 45415060 NC_060934.1 CM039043.1 97.06 True fake: not a misassembly (possible transposable element) 41642172 41643478 45415061 45416367 NC_060934.1 CM039043.1 97.6 True fake: not a misassembly (possible transposable element) 39761110 39761978 45418529 45419397 NC_060934.1 CM039043.1 97.89 True fake: not a misassembly (possible transposable element) 41640060 41643815 45419398 45423153 NC_060934.1 CM039043.1 97.74 True fake: not a misassembly (possible transposable element) 39743316 39747124 45423470 45427277 NC_060934.1 CM039043.1 97.06 True fake: not a misassembly (possible transposable element) 41642172 41643478 45427278 45428584 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = 136024 41780689 41782172 45429771 45431254 NC_060934.1 CM039043.1 97.24 True local misassembly 41782387 41783252 45432148 45433013 NC_060934.1 CM039043.1 97.81 True local misassembly 41783853 41785824 45433955 45435926 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = -2024287 39761539 39762317 45435928 45436706 NC_060934.1 CM039043.1 98.26 True relocation, inconsistency = -34951 39727367 39729161 45436707 45438501 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -11879 39717970 39719560 45439189 45440781 NC_060934.1 CM039043.1 97.44 True relocation, inconsistency = 1923893 41643454 41647890 45440782 45445218 NC_060934.1 CM039043.1 98.29 True local misassembly 41643816 41645641 45445219 45447044 NC_060934.1 CM039043.1 98.39 True relocation, inconsistency = -7806 41637836 41643815 45447045 45453023 NC_060934.1 CM039043.1 97.56 True fake: not a misassembly (possible transposable element) 39743316 39745012 45453340 45455037 NC_060934.1 CM039043.1 97.03 True fake: not a misassembly (possible transposable element) 41643454 41648610 45455038 45460192 NC_060934.1 CM039043.1 98.22 True local misassembly 41647592 41648622 45460193 45461221 NC_060934.1 CM039043.1 98.32 True relocation, inconsistency = 8142 41657255 41659369 45461712 45463828 NC_060934.1 CM039043.1 96.79 True relocation, inconsistency = -17266 41643803 41645757 45465528 45467480 NC_060934.1 CM039043.1 97.85 True relocation, inconsistency = -17644 41629165 41629768 45468532 45469135 NC_060934.1 CM039043.1 98.57 True relocation, inconsistency = -235701 41394068 41394621 45469136 45469689 NC_060934.1 CM039043.1 97.42 True relocation, inconsistency = -51246 41343376 41348180 45469690 45474454 NC_060934.1 CM039043.1 96.69 True relocation, inconsistency = 279820 41631029 41632975 45477483 45479427 NC_060934.1 CM039043.1 97.24 True relocation, inconsistency = -110655 41522321 41530951 45479428 45488057 NC_060934.1 CM039043.1 97.06 True relocation, inconsistency = 102850 41633802 41635687 45488058 45489943 NC_060934.1 CM039043.1 98.34 True relocation, inconsistency = 31553 41668721 41669789 45491424 45492492 NC_060934.1 CM039043.1 97.19 True local misassembly 41670456 41671163 45493499 45494206 NC_060934.1 CM039043.1 98.16 True indel: indel (<= 5bp) 41671164 41671997 45494208 45495041 NC_060934.1 CM039043.1 98.44 True indel: indel (<= 5bp) 41672380 41674825 45495427 45497872 NC_060934.1 CM039043.1 98.41 True relocation, inconsistency = 69541 41745491 41751073 45498997 45504579 NC_060934.1 CM039043.1 98.23 True indel: indel (<= 5bp) 41751097 41752350 45504601 45505854 NC_060934.1 CM039043.1 98.33 True indel: indel (<= 5bp) 41752351 41754765 45505858 45508272 NC_060934.1 CM039043.1 98.72 True indel: indel (<= 5bp) 41754766 41756413 45508275 45509922 NC_060934.1 CM039043.1 98.3 True local misassembly 41757093 41757858 45509923 45510688 NC_060934.1 CM039043.1 97.78 True local misassembly 41758199 41759059 45510689 45511549 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = 13571 41773695 41778385 45512614 45517304 NC_060934.1 CM039043.1 98.4 True indel: stretch of mismatches 41778513 41780425 45517432 45519344 NC_060934.1 CM039043.1 98.17 True local misassembly 41780426 41781761 45519685 45521020 NC_060934.1 CM039043.1 97.46 True local misassembly 41782102 41783252 45521021 45522171 NC_060934.1 CM039043.1 96.0 True local misassembly 41783980 41785390 45522899 45524309 NC_060934.1 CM039043.1 97.52 True indel: indel (<= 5bp) 41785391 41787086 45524311 45526006 NC_060934.1 CM039043.1 97.76 True indel: indel (<= 5bp) 41787088 41787983 45526007 45526902 NC_060934.1 CM039043.1 96.65 True indel: indel (<= 5bp) 41787985 41789254 45526903 45528172 NC_060934.1 CM039043.1 97.64 True indel: indel (<= 5bp) 41789256 41791841 45528173 45530758 NC_060934.1 CM039043.1 98.3 True indel: stretch of mismatches 41792336 41793049 45531253 45531966 NC_060934.1 CM039043.1 96.64 True indel: indel (<= 5bp) 41793052 41793823 45531967 45532738 NC_060934.1 CM039043.1 97.93 True indel: indel (<= 5bp) 41793824 41794432 45532740 45533348 NC_060934.1 CM039043.1 98.69 True indel: indel (<= 5bp) 41794434 41795156 45533349 45534071 NC_060934.1 CM039043.1 98.48 True indel: indel (<= 5bp) 41795157 41795789 45534073 45534705 NC_060934.1 CM039043.1 97.95 True indel: indel (<= 5bp) 41795791 41796591 45534706 45535506 NC_060934.1 CM039043.1 95.63 True indel: indel (<= 5bp) 41796593 41797487 45535507 45536401 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = -17650 41779838 41781107 45536402 45537671 NC_060934.1 CM039043.1 98.11 True local misassembly 41779751 41780425 45537672 45538346 NC_060934.1 CM039043.1 97.63 True local misassembly 41780426 41781996 45538687 45540257 NC_060934.1 CM039043.1 97.64 True local misassembly 41783694 41785177 45540258 45541741 NC_060934.1 CM039043.1 98.38 True local misassembly 41785517 41786198 45541742 45542423 NC_060934.1 CM039043.1 98.83 True indel: indel (<= 5bp) 41786200 41787006 45542424 45543230 NC_060934.1 CM039043.1 97.24 True local misassembly 41783612 41787086 45543231 45546705 NC_060934.1 CM039043.1 98.1 True indel: indel (<= 5bp) 41787088 41789254 45546706 45548872 NC_060934.1 CM039043.1 96.82 True indel: indel (<= 5bp) 41789256 41791841 45548873 45551458 NC_060934.1 CM039043.1 98.49 True local misassembly 41790145 41791039 45551459 45552353 NC_060934.1 CM039043.1 98.44 True indel: indel (<= 5bp) 41791041 41792335 45552354 45553648 NC_060934.1 CM039043.1 97.84 True indel: indel (<= 5bp) 41792336 41793823 45553650 45555137 NC_060934.1 CM039043.1 98.72 True indel: indel (<= 5bp) 41793824 41794432 45555139 45555747 NC_060934.1 CM039043.1 99.18 True indel: indel (<= 5bp) 41794434 41795156 45555748 45556470 NC_060934.1 CM039043.1 98.34 True indel: indel (<= 5bp) 41795157 41795702 45556472 45557017 NC_060934.1 CM039043.1 97.99 True local misassembly 41799099 41800480 45557018 45558399 NC_060934.1 CM039043.1 97.97 True indel: indel (<= 5bp) 41800481 41801968 45558401 45559888 NC_060934.1 CM039043.1 98.45 True indel: indel (<= 5bp) 41801969 41802577 45559890 45560498 NC_060934.1 CM039043.1 98.85 True indel: indel (<= 5bp) 41802579 41803301 45560499 45561221 NC_060934.1 CM039043.1 98.2 True indel: indel (<= 5bp) 41803302 41803847 45561223 45561768 NC_060934.1 CM039043.1 98.17 True local misassembly 41802492 41803301 45561769 45562578 NC_060934.1 CM039043.1 97.9 True indel: indel (<= 5bp) 41803302 41803847 45562580 45563125 NC_060934.1 CM039043.1 97.99 True local misassembly 41799099 41800480 45563126 45564507 NC_060934.1 CM039043.1 97.97 True indel: indel (<= 5bp) 41800481 41801968 45564509 45565996 NC_060934.1 CM039043.1 98.45 True indel: indel (<= 5bp) 41801969 41802577 45565998 45566606 NC_060934.1 CM039043.1 98.85 True indel: indel (<= 5bp) 41802579 41803301 45566607 45567329 NC_060934.1 CM039043.1 98.2 True indel: indel (<= 5bp) 41803302 41803847 45567331 45567876 NC_060934.1 CM039043.1 98.17 True indel: indel (<= 5bp) 41803849 41806434 45567877 45570462 NC_060934.1 CM039043.1 96.67 True local misassembly 41804865 41805450 45570589 45571174 NC_060934.1 CM039043.1 97.44 True indel: indel (<= 5bp) 41805453 41807543 45571175 45573265 NC_060934.1 CM039043.1 97.94 True local misassembly 41809242 41810406 45573266 45574430 NC_060934.1 CM039043.1 97.17 True local misassembly 41817358 41818240 45574589 45575471 NC_060934.1 CM039043.1 95.58 True indel: indel (<= 5bp) 41818242 41820522 45575472 45577752 NC_060934.1 CM039043.1 97.72 True local misassembly 41814531 41816561 45578210 45580240 NC_060934.1 CM039043.1 97.69 True indel: indel (<= 5bp) 41816562 41817731 45580242 45581411 NC_060934.1 CM039043.1 98.12 True relocation, inconsistency = 33944 41851676 41852948 45581412 45582684 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 41852949 41855069 45582686 45584806 NC_060934.1 CM039043.1 98.26 True local misassembly 41856429 41857701 45584807 45586079 NC_060934.1 CM039043.1 97.88 True indel: indel (<= 5bp) 41857702 41858487 45586081 45586866 NC_060934.1 CM039043.1 97.96 True indel: indel (<= 5bp) 41858975 41861682 45587352 45590059 NC_060934.1 CM039043.1 97.56 True local misassembly 41861683 41862375 45590400 45591092 NC_060934.1 CM039043.1 96.39 True relocation, inconsistency = -29532 41832844 41835044 45591093 45593293 NC_060934.1 CM039043.1 98.46 True relocation, inconsistency = 18328 41853373 41855081 45593294 45595002 NC_060934.1 CM039043.1 98.07 True local misassembly 41855082 41856427 45595343 45596688 NC_060934.1 CM039043.1 96.95 True indel: indel (<= 5bp) 41856429 41857701 45596689 45597961 NC_060934.1 CM039043.1 97.8 True indel: indel (<= 5bp) 41857702 41861705 45597963 45601966 NC_060934.1 CM039043.1 97.85 True relocation, inconsistency = 8482 41870188 41871629 45601967 45603408 NC_060934.1 CM039043.1 97.86 True local misassembly 41869932 41871620 45603409 45605097 NC_060934.1 CM039043.1 98.34 True local misassembly 41872639 41875354 45605098 45607813 NC_060934.1 CM039043.1 98.34 True local misassembly 41875355 41878070 45608154 45610869 NC_060934.1 CM039043.1 98.45 True relocation, inconsistency = -26816 41851255 41852948 45610870 45612563 NC_060934.1 CM039043.1 97.92 True indel: indel (<= 5bp) 41852949 41854923 45612565 45614539 NC_060934.1 CM039043.1 99.09 True relocation, inconsistency = 26186 41881163 41881958 45614593 45615388 NC_060934.1 CM039043.1 98.87 True local misassembly 41883618 41884225 45616370 45616977 NC_060934.1 CM039043.1 98.52 True local misassembly 41881440 41883617 45617249 45619426 NC_060934.1 CM039043.1 98.03 True indel: indel (<= 5bp) 41883618 41885059 45619428 45620869 NC_060934.1 CM039043.1 98.17 True local misassembly 41880983 41883619 45620870 45623505 NC_060934.1 CM039043.1 98.79 True local misassembly 41887442 41888178 45623594 45624330 NC_060934.1 CM039043.1 98.47 True local misassembly 41892935 41900537 45624331 45631934 NC_060934.1 CM039043.1 98.84 True local misassembly 41905112 41905840 45636798 45637526 NC_060934.1 CM039043.1 97.26 True local misassembly 41905841 41906461 45638546 45639166 NC_060934.1 CM039043.1 97.91 True indel: indel (<= 5bp) 41906462 41909016 45639169 45641723 NC_060934.1 CM039043.1 98.28 True local misassembly 41907727 41908956 45642813 45644042 NC_060934.1 CM039043.1 97.97 True relocation, inconsistency = -12906 41897294 42085191 45645286 45833111 NC_060934.1 CM039043.1 98.98 True relocation, inconsistency = 59186 42145084 42147963 45833818 45836672 NC_060934.1 CM039043.1 95.48 True local misassembly 42142944 42151132 45836673 45844747 NC_060934.1 CM039043.1 95.32 True local misassembly 42149022 42149906 45845180 45846064 NC_060934.1 CM039043.1 98.42 True local misassembly 42150938 42151481 45847101 45847644 NC_060934.1 CM039043.1 99.45 True indel: indel (<= 5bp) 42151487 42152971 45847645 45849129 NC_060934.1 CM039043.1 99.12 True local misassembly 42159131 42159836 45855610 45856315 NC_060934.1 CM039043.1 99.15 True relocation, inconsistency = 14117 42177557 42178152 45859919 45860514 NC_060934.1 CM039043.1 99.16 True indel: indel (> 5bp) 42178153 42178791 45860525 45861163 NC_060934.1 CM039043.1 99.84 True local misassembly 42179269 42180020 45861686 45862437 NC_060934.1 CM039043.1 99.47 True local misassembly 42189110 42203541 45870623 45885136 NC_060934.1 CM039043.1 95.33 True relocation, inconsistency = 8118 42214912 42227590 45888389 45900920 NC_060934.1 CM039043.1 95.36 True indel: indel (> 5bp) 42227962 42232614 45901242 45906007 NC_060934.1 CM039043.1 95.38 True relocation, inconsistency = 45090 42277705 42282419 45906008 45910721 NC_060934.1 CM039043.1 95.24 True relocation, inconsistency = 69641 42354716 42355328 45913377 45913989 NC_060934.1 CM039043.1 98.69 True local misassembly 42356145 42356775 45914866 45915496 NC_060934.1 CM039043.1 96.99 True local misassembly 42360298 42360916 45918371 45918989 NC_060934.1 CM039043.1 98.55 True local misassembly 42362423 42362966 45920526 45921069 NC_060934.1 CM039043.1 98.53 True relocation, inconsistency = -100648 42262594 42267528 45921345 45926213 NC_060934.1 CM039043.1 96.66 True relocation, inconsistency = 8858 42277677 42278231 45927504 45928058 NC_060934.1 CM039043.1 99.46 True local misassembly 42280077 42280975 45929934 45930832 NC_060934.1 CM039043.1 98.55 True indel: indel (<= 5bp) 42280976 42281706 45930838 45931568 NC_060934.1 CM039043.1 98.77 True relocation, inconsistency = -25947 42257020 42257625 45932829 45933434 NC_060934.1 CM039043.1 99.01 True indel: indel (<= 5bp) 42257631 42258290 45933435 45934094 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 17960 42280077 42280852 45937921 45938696 NC_060934.1 CM039043.1 98.32 True indel: indel (> 5bp) 42280976 42281703 45938835 45939562 NC_060934.1 CM039043.1 98.63 True local misassembly 42280077 42280852 45944469 45945244 NC_060934.1 CM039043.1 98.2 True local misassembly 42280077 42280852 45951011 45951786 NC_060934.1 CM039043.1 98.45 True relocation, inconsistency = -8078 42280077 42280852 45959089 45959864 NC_060934.1 CM039043.1 98.45 True relocation, inconsistency = -57458 42226115 42226685 45962585 45963155 NC_060934.1 CM039043.1 99.47 True relocation, inconsistency = 11430 42249236 42249864 45974276 45974904 NC_060934.1 CM039043.1 98.73 True local misassembly 42250492 42251279 45975552 45976339 NC_060934.1 CM039043.1 98.35 True local misassembly 42252326 42253179 45977291 45978144 NC_060934.1 CM039043.1 98.36 True indel: indel (> 5bp) 42253318 42253869 45978298 45978849 NC_060934.1 CM039043.1 99.28 True relocation, inconsistency = 92394 42354716 42355328 45987302 45987914 NC_060934.1 CM039043.1 98.69 True local misassembly 42357782 42358312 45989893 45990423 NC_060934.1 CM039043.1 97.55 True local misassembly 42359241 42359740 45991397 45991896 NC_060934.1 CM039043.1 99.2 True local misassembly 42361815 42362447 45994046 45994678 NC_060934.1 CM039043.1 99.05 True local misassembly 42363642 42364215 45995858 45996431 NC_060934.1 CM039043.1 99.48 True local misassembly 42366260 42366782 45998407 45998929 NC_060934.1 CM039043.1 98.85 True local misassembly 42367703 42368249 45999890 46000436 NC_060934.1 CM039043.1 99.09 True local misassembly 42370473 42371161 46002590 46003278 NC_060934.1 CM039043.1 99.27 True indel: indel (> 5bp) 42371236 42371868 46003373 46004005 NC_060934.1 CM039043.1 99.21 True local misassembly 42373961 42374907 46007312 46008263 NC_060934.1 CM039043.1 99.18 True local misassembly 42371869 42373959 46008264 46010339 NC_060934.1 CM039043.1 97.39 True local misassembly 42373961 42374907 46011570 46012521 NC_060934.1 CM039043.1 99.18 True local misassembly 42371869 42373959 46012522 46014592 NC_060934.1 CM039043.1 97.62 True local misassembly 42373961 42380696 46015823 46022587 NC_060934.1 CM039043.1 96.6 True relocation, inconsistency = 43054 42439297 42440316 46038134 46039123 NC_060934.1 CM039043.1 95.88 True relocation, inconsistency = -30283 42411628 42412215 46040718 46041305 NC_060934.1 CM039043.1 98.64 True local misassembly 42413648 42414221 46042815 46043388 NC_060934.1 CM039043.1 98.08 True local misassembly 42422557 42423174 46053836 46054453 NC_060934.1 CM039043.1 97.73 True local misassembly 42426944 42427602 46058403 46059061 NC_060934.1 CM039043.1 99.24 True local misassembly 42428621 42429353 46060090 46060822 NC_060934.1 CM039043.1 99.32 True relocation, inconsistency = 32782 42463532 42464139 46062219 46062826 NC_060934.1 CM039043.1 99.34 True relocation, inconsistency = -15765 42455525 42456080 46069977 46070532 NC_060934.1 CM039043.1 99.28 True local misassembly 42457473 42458062 46071835 46072424 NC_060934.1 CM039043.1 99.66 True indel: indel (<= 5bp) 42458541 42459427 46072908 46073794 NC_060934.1 CM039043.1 98.99 True local misassembly 42463737 42464432 46078950 46079645 NC_060934.1 CM039043.1 99.14 True relocation, inconsistency = -7564 42462299 42465954 46085076 46088771 NC_060934.1 CM039043.1 95.43 True fake: not a misassembly (possible transposable element) 42398827 42399356 46090642 46091171 NC_060934.1 CM039043.1 98.87 True fake: not a misassembly (possible transposable element) 42468623 42547087 46092622 46171581 NC_060934.1 CM039043.1 98.5 True translocation 6046955 6047784 46171745 46172574 NC_060945.1 CM039043.1 98.19 True local misassembly 6047772 6049625 46174674 46176527 NC_060945.1 CM039043.1 97.84 True local misassembly 6050949 6052807 46176972 46178830 NC_060945.1 CM039043.1 97.47 True indel: indel (<= 5bp) 6052808 6055047 46178832 46181071 NC_060945.1 CM039043.1 96.83 True local misassembly 6055827 6056745 46182082 46183000 NC_060945.1 CM039043.1 97.17 True indel: indel (> 5bp) 6056746 6059252 46183069 46185575 NC_060945.1 CM039043.1 97.29 True indel: indel (<= 5bp) 6059253 6062545 46185577 46188869 NC_060945.1 CM039043.1 96.84 True translocation 128553980 128563962 46199084 46189235 NC_060925.1 CM039043.1 96.93 True relocation, inconsistency = 25899 128505314 128527844 46221841 46199321 NC_060925.1 CM039043.1 97.28 True local misassembly 128495901 128503179 46229258 46221842 NC_060925.1 CM039043.1 95.59 True local misassembly 128464439 128493372 46257786 46229259 NC_060925.1 CM039043.1 96.82 True translocation 42686081 42688009 46258101 46260052 NC_060934.1 CM039043.1 96.98 True relocation, inconsistency = -20358 42667670 42672593 46260071 46264994 NC_060934.1 CM039043.1 98.6 True relocation, inconsistency = -89848 42595750 42597004 46277999 46279253 NC_060934.1 CM039043.1 97.85 True indel: indel (> 5bp) 42597077 42598658 46279254 46280835 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = 167456 42767554 42768204 46282275 46282925 NC_060934.1 CM039043.1 96.93 True local misassembly 42768641 42770903 46283500 46285762 NC_060934.1 CM039043.1 97.48 True indel: indel (<= 5bp) 42770904 42772297 46285764 46287157 NC_060934.1 CM039043.1 97.92 True local misassembly 42772575 42773306 46287158 46287889 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = 99503 42872810 42874605 46287890 46289685 NC_060934.1 CM039043.1 97.05 True local misassembly 42875069 42876342 46290753 46292026 NC_060934.1 CM039043.1 98.19 True relocation, inconsistency = -113829 42763618 42764630 46293131 46294143 NC_060934.1 CM039043.1 97.24 True local misassembly 42764822 42766971 46294237 46296386 NC_060934.1 CM039043.1 97.07 True local misassembly 42767554 42768204 46297803 46298453 NC_060934.1 CM039043.1 96.93 True relocation, inconsistency = -171706 42596499 42597004 46298454 46298959 NC_060934.1 CM039043.1 97.94 True indel: indel (> 5bp) 42597077 42601504 46298960 46303387 NC_060934.1 CM039043.1 97.29 True relocation, inconsistency = 267581 42869116 42870911 46303418 46305213 NC_060934.1 CM039043.1 97.05 True local misassembly 42866649 42869063 46305249 46307663 NC_060934.1 CM039043.1 98.05 True indel: indel (> 5bp) 42869116 42870911 46307664 46309459 NC_060934.1 CM039043.1 97.1 True local misassembly 42871880 42872727 46311610 46312457 NC_060934.1 CM039043.1 97.17 True indel: indel (> 5bp) 42872810 42873576 46312487 46313253 NC_060934.1 CM039043.1 98.17 True relocation, inconsistency = -106445 42767907 42768754 46314029 46314876 NC_060934.1 CM039043.1 96.93 True indel: indel (<= 5bp) 42768756 42770532 46314877 46316653 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = 96032 42866565 42872612 46316654 46322649 NC_060934.1 CM039043.1 97.22 True relocation, inconsistency = 39358 42911971 42915674 46322650 46326267 NC_060934.1 CM039043.1 95.38 True local misassembly 42911971 42915657 46326268 46329843 NC_060934.1 CM039043.1 95.48 True local misassembly 42911954 42915667 46329844 46333479 NC_060934.1 CM039043.1 95.66 True local misassembly 42911964 42933197 46333480 46354378 NC_060934.1 CM039043.1 96.24 True local misassembly 42926574 42936816 46354380 46364612 NC_060934.1 CM039043.1 97.79 True relocation, inconsistency = -109026 42827791 42829607 46364613 46366429 NC_060934.1 CM039043.1 98.15 True local misassembly 42825404 42830991 46366430 46372033 NC_060934.1 CM039043.1 98.66 True relocation, inconsistency = 75746 42906738 42907748 46372034 46373044 NC_060934.1 CM039043.1 97.97 True indel: indel (<= 5bp) 42907750 42908593 46373045 46373888 NC_060934.1 CM039043.1 98.94 True relocation, inconsistency = -72295 42836299 42839020 46373889 46376537 NC_060934.1 CM039043.1 95.48 True local misassembly 42839577 42842527 46376824 46379773 NC_060934.1 CM039043.1 99.22 True local misassembly 42839587 42842527 46379774 46382713 NC_060934.1 CM039043.1 99.22 True relocation, inconsistency = -221599 42620963 42622063 46382748 46383838 NC_060934.1 CM039043.1 96.37 True relocation, inconsistency = 304814 42927052 42930777 46384013 46387738 NC_060934.1 CM039043.1 97.72 True local misassembly 42926574 42936816 46387739 46397971 NC_060934.1 CM039043.1 97.79 True relocation, inconsistency = -36974 42899843 42903647 46397972 46401776 NC_060934.1 CM039043.1 98.2 True indel: indel (> 5bp) 42903968 42904920 46402051 46403003 NC_060934.1 CM039043.1 97.27 True indel: indel (> 5bp) 42905247 42905783 46403297 46403833 NC_060934.1 CM039043.1 97.95 True local misassembly 42905832 42907748 46404487 46406403 NC_060934.1 CM039043.1 97.7 True indel: indel (<= 5bp) 42907750 42908598 46406404 46407252 NC_060934.1 CM039043.1 98.94 True relocation, inconsistency = -45423 42863350 42867075 46407427 46411152 NC_060934.1 CM039043.1 96.59 True relocation, inconsistency = -48907 42818169 42833069 46411153 46426343 NC_060934.1 CM039043.1 95.16 True relocation, inconsistency = 94888 42927958 42935848 46426344 46434190 NC_060934.1 CM039043.1 97.23 True relocation, inconsistency = -111967 42823882 42825823 46434191 46436132 NC_060934.1 CM039043.1 98.51 True indel: indel (> 5bp) 42825834 42826786 46436133 46437085 NC_060934.1 CM039043.1 97.06 True local misassembly 42828000 42830991 46437808 46440799 NC_060934.1 CM039043.1 98.83 True relocation, inconsistency = -15064 42816580 42833069 46441452 46458258 NC_060934.1 CM039043.1 95.37 True relocation, inconsistency = 76064 42909463 42925485 46458588 46474489 NC_060934.1 CM039043.1 96.56 True local misassembly 42920028 42923252 46474490 46477714 NC_060934.1 CM039043.1 96.74 True fake: not a misassembly (possible transposable element) 42950793 42957078 46477999 46484284 NC_060934.1 CM039043.1 98.36 True fake: not a misassembly (possible transposable element) 42927304 42928804 46484298 46485798 NC_060934.1 CM039043.1 98.07 True indel: indel (> 5bp) 42928820 42933023 46485823 46490026 NC_060934.1 CM039043.1 97.76 True local misassembly 42928888 42929895 46490090 46491097 NC_060934.1 CM039043.1 97.72 True indel: indel (> 5bp) 42930246 42930988 46491396 46492138 NC_060934.1 CM039043.1 99.6 True indel: indel (> 5bp) 42931015 42932568 46492139 46493692 NC_060934.1 CM039043.1 97.53 True relocation, inconsistency = -116856 42815713 42818272 46493693 46496252 NC_060934.1 CM039043.1 96.82 True local misassembly 42816447 42827165 46496253 46507010 NC_060934.1 CM039043.1 97.34 True relocation, inconsistency = -9182 42818169 42823627 46507196 46512703 NC_060934.1 CM039043.1 97.05 True relocation, inconsistency = 121737 42945365 42958671 46512704 46525987 NC_060934.1 CM039043.1 97.41 True relocation, inconsistency = -17594 42941078 42958959 46525988 46543843 NC_060934.1 CM039043.1 97.52 True relocation, inconsistency = -33914 42925046 42929762 46543844 46548570 NC_060934.1 CM039043.1 97.72 True local misassembly 42930289 42934429 46549107 46553238 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -22476 42911954 42926120 46553239 46567336 NC_060934.1 CM039043.1 97.38 True relocation, inconsistency = -10916 42915205 42923276 46567337 46575385 NC_060934.1 CM039043.1 96.52 True fake: not a misassembly (possible transposable element) 42824387 42825808 46575392 46576813 NC_060934.1 CM039043.1 97.75 True fake: not a misassembly (possible transposable element) 42930588 42931371 46576814 46577597 NC_060934.1 CM039043.1 98.06 True fake: not a misassembly (possible transposable element) 42859244 42862871 46577603 46581240 NC_060934.1 CM039043.1 97.59 True fake: not a misassembly (possible transposable element) 42941078 42955584 46581241 46595711 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = -38151 42917474 42924861 46595752 46603149 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 20567 42945429 42962926 46603150 46620622 NC_060934.1 CM039043.1 97.33 True relocation, inconsistency = -133301 42829626 42830991 46620623 46621988 NC_060934.1 CM039043.1 98.67 True local misassembly 42832145 42833062 46622881 46623798 NC_060934.1 CM039043.1 97.28 True relocation, inconsistency = 78442 42911954 42923037 46624248 46635278 NC_060934.1 CM039043.1 97.7 True relocation, inconsistency = -60070 42862968 42870326 46635279 46642532 NC_060934.1 CM039043.1 97.26 True indel: indel (> 5bp) 42870663 42871199 46642836 46643372 NC_060934.1 CM039043.1 97.39 True relocation, inconsistency = 53383 42924758 42929604 46643548 46648318 NC_060934.1 CM039043.1 96.63 True relocation, inconsistency = -114435 42815170 42828592 46648319 46661748 NC_060934.1 CM039043.1 96.93 True relocation, inconsistency = -15704 42812889 42815122 46661749 46663982 NC_060934.1 CM039043.1 98.42 True indel: indel (> 5bp) 42815170 42819591 46664080 46668490 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = 19989 42839581 42841739 46668491 46670659 NC_060934.1 CM039043.1 98.03 True relocation, inconsistency = 68009 42909749 42911670 46670660 46672581 NC_060934.1 CM039043.1 96.85 True relocation, inconsistency = 24887 42936558 42950352 46672582 46686168 NC_060934.1 CM039043.1 96.25 True relocation, inconsistency = -20577 42929776 42935405 46686169 46691798 NC_060934.1 CM039043.1 96.55 True relocation, inconsistency = -22989 42912912 42914836 46692294 46694218 NC_060934.1 CM039043.1 97.35 True indel: indel (> 5bp) 42914889 42917684 46694219 46697014 NC_060934.1 CM039043.1 98.82 True local misassembly 42918472 42919371 46697461 46698360 NC_060934.1 CM039043.1 97.11 True indel: indel (<= 5bp) 42919634 42923361 46698621 46702348 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -9630 42914076 42927430 46702693 46716015 NC_060934.1 CM039043.1 97.66 True local misassembly 42923525 42928482 46716220 46721177 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -69169 42859660 42878106 46721524 46739895 NC_060934.1 CM039043.1 97.25 True relocation, inconsistency = -52702 42825405 42828592 46739896 46743093 NC_060934.1 CM039043.1 97.15 True indel: indel (> 5bp) 42828978 42830664 46743489 46745175 NC_060934.1 CM039043.1 98.46 True relocation, inconsistency = 84224 42914889 42919719 46745176 46750006 NC_060934.1 CM039043.1 98.28 True indel: indel (> 5bp) 42919720 42923114 46750017 46753411 NC_060934.1 CM039043.1 97.37 True relocation, inconsistency = -307371 42615744 42619872 46753412 46757543 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = 203646 42823519 42824221 46757544 46758246 NC_060934.1 CM039043.1 97.64 True local misassembly 42824664 42827649 46758247 46761232 NC_060934.1 CM039043.1 98.23 True indel: indel (> 5bp) 42827650 42828602 46761243 46762195 NC_060934.1 CM039043.1 96.85 True indel: indel (> 5bp) 42828603 42830991 46762206 46764594 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = 109644 42941078 42958959 46765037 46782892 NC_060934.1 CM039043.1 97.54 True relocation, inconsistency = -135084 42823876 42828592 46782893 46787619 NC_060934.1 CM039043.1 97.35 True local misassembly 42829119 42830991 46788156 46790028 NC_060934.1 CM039043.1 98.67 True relocation, inconsistency = 119963 42951867 42965044 46790941 46803903 NC_060934.1 CM039043.1 96.09 True relocation, inconsistency = -89874 42875171 42877486 46803904 46806219 NC_060934.1 CM039043.1 96.69 True relocation, inconsistency = 8467 42885954 42895971 46806220 46816257 NC_060934.1 CM039043.1 97.49 True relocation, inconsistency = 27760 42923732 42925061 46816258 46817587 NC_060934.1 CM039043.1 98.0 True relocation, inconsistency = 25440 42950793 42955029 46817879 46822115 NC_060934.1 CM039043.1 97.65 True relocation, inconsistency = -13952 42941078 42955584 46822116 46836586 NC_060934.1 CM039043.1 97.63 True relocation, inconsistency = -38151 42917474 42929762 46836627 46848935 NC_060934.1 CM039043.1 97.74 True local misassembly 42930289 42934429 46849472 46853603 NC_060934.1 CM039043.1 97.92 True relocation, inconsistency = -22476 42911954 42923037 46853604 46864631 NC_060934.1 CM039043.1 97.68 True relocation, inconsistency = -60070 42862968 42870326 46864632 46871885 NC_060934.1 CM039043.1 97.27 True indel: indel (> 5bp) 42870663 42871199 46872189 46872725 NC_060934.1 CM039043.1 97.58 True relocation, inconsistency = 53383 42924758 42936831 46872901 46884982 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -18772 42918060 42921070 46884983 46888003 NC_060934.1 CM039043.1 97.52 True fake: not a misassembly (possible transposable element) 42815170 42819591 46888101 46892511 NC_060934.1 CM039043.1 97.6 True fake: not a misassembly (possible transposable element) 42921879 42934711 46892977 46905809 NC_060934.1 CM039043.1 98.01 True relocation, inconsistency = -10267 42924758 42935405 46906123 46916676 NC_060934.1 CM039043.1 96.57 True relocation, inconsistency = -22989 42912912 42914836 46917172 46919096 NC_060934.1 CM039043.1 97.25 True indel: indel (> 5bp) 42914889 42917684 46919097 46921892 NC_060934.1 CM039043.1 98.86 True indel: indel (> 5bp) 42917711 42919371 46921893 46923553 NC_060934.1 CM039043.1 97.23 True indel: indel (<= 5bp) 42919634 42923361 46923814 46927541 NC_060934.1 CM039043.1 97.75 True local misassembly 42923433 42928403 46928091 46933061 NC_060934.1 CM039043.1 98.14 True relocation, inconsistency = -112057 42816347 42828409 46933062 46945181 NC_060934.1 CM039043.1 97.34 True local misassembly 42822952 42824007 46945182 46946237 NC_060934.1 CM039043.1 96.79 True indel: indel (> 5bp) 42824008 42830027 46946248 46952267 NC_060934.1 CM039043.1 98.37 True indel: indel (> 5bp) 42830038 42830990 46952268 46953220 NC_060934.1 CM039043.1 98.01 True local misassembly 42831022 42833062 46953562 46955602 NC_060934.1 CM039043.1 97.21 True relocation, inconsistency = 83963 42917601 42919719 46956178 46958296 NC_060934.1 CM039043.1 97.59 True indel: indel (> 5bp) 42919720 42923361 46958307 46961948 NC_060934.1 CM039043.1 97.64 True relocation, inconsistency = 27978 42951700 42959073 46962309 46969691 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = -39382 42919720 42923361 46969720 46973361 NC_060934.1 CM039043.1 97.64 True local misassembly 42923525 42928482 46974003 46978960 NC_060934.1 CM039043.1 97.92 True local misassembly 42925178 42935805 46979307 46989944 NC_060934.1 CM039043.1 97.66 True relocation, inconsistency = -69732 42866074 42869063 46989945 46992934 NC_060934.1 CM039043.1 98.02 True indel: indel (> 5bp) 42869384 42871199 46993193 46995008 NC_060934.1 CM039043.1 96.75 True indel: indel (> 5bp) 42871200 42872757 46995019 46996576 NC_060934.1 CM039043.1 99.04 True indel: indel (> 5bp) 42872810 42874893 46996577 46998660 NC_060934.1 CM039043.1 97.7 True local misassembly 42875057 42878106 46999302 47002351 NC_060934.1 CM039043.1 98.07 True relocation, inconsistency = -11030 42867096 42869383 47002371 47004605 NC_060934.1 CM039043.1 97.03 True relocation, inconsistency = -9724 42859660 42872142 47004606 47017045 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = 57620 42929763 42936816 47017046 47024076 NC_060934.1 CM039043.1 97.8 True relocation, inconsistency = -100236 42836581 42837997 47024077 47025493 NC_060934.1 CM039043.1 97.61 True relocation, inconsistency = 75944 42914122 42929762 47025674 47041165 NC_060934.1 CM039043.1 96.63 True local misassembly 42926121 42927165 47041166 47042210 NC_060934.1 CM039043.1 96.56 True local misassembly 42921144 42934032 47042242 47055103 NC_060934.1 CM039043.1 97.97 True relocation, inconsistency = -113744 42820307 42830991 47055122 47065855 NC_060934.1 CM039043.1 98.22 True relocation, inconsistency = 96966 42927958 42929775 47065856 47067624 NC_060934.1 CM039043.1 96.88 True local misassembly 42930287 42931253 47068169 47069135 NC_060934.1 CM039043.1 98.35 True local misassembly 42931348 42933023 47069136 47070811 NC_060934.1 CM039043.1 97.85 True indel: indel (> 5bp) 42933034 42935046 47070812 47072824 NC_060934.1 CM039043.1 98.76 True indel: indel (> 5bp) 42935125 42935802 47072825 47073502 NC_060934.1 CM039043.1 96.61 True indel: indel (> 5bp) 42936129 42937469 47073796 47075136 NC_060934.1 CM039043.1 97.39 True indel: indel (> 5bp) 42937522 42939283 47075137 47076898 NC_060934.1 CM039043.1 98.92 True relocation, inconsistency = -65931 42873353 42874030 47076899 47077576 NC_060934.1 CM039043.1 97.64 True indel: indel (> 5bp) 42874357 42874903 47077870 47078416 NC_060934.1 CM039043.1 97.81 True relocation, inconsistency = 46047 42921116 42933976 47078582 47091432 NC_060934.1 CM039043.1 97.65 True local misassembly 42929763 42934861 47091433 47096531 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = -65008 42870017 42871247 47096695 47097925 NC_060934.1 CM039043.1 98.54 True local misassembly 42871248 42872757 47098446 47099955 NC_060934.1 CM039043.1 98.94 True indel: indel (> 5bp) 42872810 42874831 47099956 47101977 NC_060934.1 CM039043.1 97.82 True relocation, inconsistency = 38838 42914091 42926814 47102399 47115089 NC_060934.1 CM039043.1 97.75 True relocation, inconsistency = -66209 42860606 42877969 47115090 47132323 NC_060934.1 CM039043.1 96.79 True relocation, inconsistency = 33848 42911958 42928734 47132464 47149161 NC_060934.1 CM039043.1 96.85 True relocation, inconsistency = -10926 42917809 42927526 47149162 47158863 NC_060934.1 CM039043.1 97.24 True indel: stretch of mismatches 42927527 42930602 47158864 47161939 NC_060934.1 CM039043.1 98.6 True indel: indel (> 5bp) 42930613 42931586 47161940 47162913 NC_060934.1 CM039043.1 97.13 True local misassembly 42931587 42934446 47163305 47166164 NC_060934.1 CM039043.1 98.64 True relocation, inconsistency = -48601 42886427 42889067 47166746 47169386 NC_060934.1 CM039043.1 98.56 True local misassembly 42889068 42892001 47169855 47172788 NC_060934.1 CM039043.1 98.33 True relocation, inconsistency = 19956 42911958 42929762 47172789 47190571 NC_060934.1 CM039043.1 97.62 True local misassembly 42926121 42927942 47190572 47192383 NC_060934.1 CM039043.1 97.14 True relocation, inconsistency = -93525 42834825 42836603 47192791 47194546 NC_060934.1 CM039043.1 96.01 True relocation, inconsistency = 75817 42912708 42924300 47194834 47206348 NC_060934.1 CM039043.1 97.71 True relocation, inconsistency = 24900 42949397 42950689 47206545 47207837 NC_060934.1 CM039043.1 97.37 True indel: indel (> 5bp) 42950713 42951592 47207838 47208717 NC_060934.1 CM039043.1 98.64 True local misassembly 42952061 42957275 47208718 47213932 NC_060934.1 CM039043.1 98.37 True relocation, inconsistency = -140513 42816763 42820414 47213933 47217584 NC_060934.1 CM039043.1 97.68 True indel: indel (> 5bp) 42820415 42822062 47217595 47219242 NC_060934.1 CM039043.1 98.24 True relocation, inconsistency = 123982 42946045 42959069 47219243 47232277 NC_060934.1 CM039043.1 97.94 True relocation, inconsistency = -136442 42822628 42825542 47232278 47235192 NC_060934.1 CM039043.1 98.76 True indel: indel (<= 5bp) 42825543 42827649 47235194 47237300 NC_060934.1 CM039043.1 97.01 True relocation, inconsistency = 89649 42917474 42927070 47237476 47247092 NC_060934.1 CM039043.1 97.89 True relocation, inconsistency = -57152 42869919 42872735 47247093 47249909 NC_060934.1 CM039043.1 99.24 True indel: indel (> 5bp) 42872787 42874893 47249910 47252016 NC_060934.1 CM039043.1 96.92 True local misassembly 42874961 42877991 47252689 47255719 NC_060934.1 CM039043.1 98.19 True relocation, inconsistency = -60801 42817191 42818588 47255720 47257117 NC_060934.1 CM039043.1 97.14 True indel: indel (> 5bp) 42818599 42820414 47257118 47258933 NC_060934.1 CM039043.1 98.4 True indel: indel (> 5bp) 42820415 42822062 47258944 47260591 NC_060934.1 CM039043.1 98.0 True local misassembly 42822482 42827649 47260592 47265759 NC_060934.1 CM039043.1 98.08 True relocation, inconsistency = 98749 42926574 42933750 47265935 47273101 NC_060934.1 CM039043.1 97.92 True local misassembly 42929537 42931013 47273102 47274578 NC_060934.1 CM039043.1 98.45 True local misassembly 42931490 42935525 47275825 47279860 NC_060934.1 CM039043.1 98.46 True relocation, inconsistency = -20578 42914948 42916077 47279861 47280990 NC_060934.1 CM039043.1 96.64 True indel: indel (> 5bp) 42916078 42920395 47281001 47285318 NC_060934.1 CM039043.1 98.17 True indel: indel (> 5bp) 42920406 42924037 47285319 47288950 NC_060934.1 CM039043.1 98.05 True indel: indel (> 5bp) 42924048 42925177 47288951 47290080 NC_060934.1 CM039043.1 98.5 True indel: indel (> 5bp) 42925178 42927980 47290091 47292893 NC_060934.1 CM039043.1 98.61 True indel: indel (> 5bp) 42928056 42928819 47292894 47293657 NC_060934.1 CM039043.1 95.68 True relocation, inconsistency = 27978 42957624 42959091 47294484 47295951 NC_060934.1 CM039043.1 97.07 True indel: indel (> 5bp) 42959102 42971154 47295952 47308004 NC_060934.1 CM039043.1 98.56 True indel: indel (<= 5bp) 42971155 42972600 47308008 47309453 NC_060934.1 CM039043.1 99.24 True local misassembly 42976285 43083641 47313112 47421262 NC_060934.1 CM039043.1 98.5 True relocation, inconsistency = 15239 43098881 46223838 47421263 50550023 NC_060934.1 CM039043.1 99.54 True translocation 177198400 177199782 50552309 50553689 NC_060925.1 CM039043.1 95.96 True translocation 46223270 47247950 50565497 51590223 NC_060934.1 CM039043.1 99.75 True local misassembly 47249145 47560424 51590249 51902246 NC_060934.1 CM039043.1 99.32 True local misassembly 47562319 49504150 51902493 53843464 NC_060934.1 CM039043.1 99.79 True local misassembly 49504419 50916263 53843534 55255953 NC_060934.1 CM039043.1 99.78 True local misassembly 50916279 53105185 55256911 57445034 NC_060934.1 CM039043.1 99.79 True local misassembly 53104945 59476028 57447310 63817383 NC_060934.1 CM039043.1 99.83 True indel: indel (> 5bp) 59476090 60370629 63817482 64712161 NC_060934.1 CM039043.1 99.88 True indel: indel (> 5bp) 60370684 63939510 64712162 68281365 NC_060934.1 CM039043.1 99.76 True indel: indel (> 5bp) 63939631 64668407 68281471 69012054 NC_060934.1 CM039043.1 99.43 True local misassembly 64668878 65945420 69012655 70288474 NC_060934.1 CM039043.1 99.79 True local misassembly 65947392 71558502 70290528 75897225 NC_060934.1 CM039043.1 99.59 True local misassembly 71558673 73068907 75897776 77408088 NC_060934.1 CM039043.1 99.69 True local misassembly 73069462 73093473 77408556 77432619 NC_060934.1 CM039043.1 99.37 True indel: indel (> 5bp) 73093511 74531368 77432692 78869909 NC_060934.1 CM039043.1 99.66 True indel: stretch of mismatches 74531562 80781458 78870103 85119760 NC_060934.1 CM039043.1 99.86 True indel: indel (> 5bp) 80781482 81636616 85119798 85974961 NC_060934.1 CM039043.1 99.77 True local misassembly 81638354 82244682 85975004 86583352 NC_060934.1 CM039043.1 99.39 True indel: indel (> 5bp) 82244783 86238152 86583412 90569600 NC_060934.1 CM039043.1 99.59 True indel: stretch of mismatches 86238153 90672094 90569601 95003862 NC_060934.1 CM039043.1 99.8 True local misassembly 90672184 93775720 95004164 98107406 NC_060934.1 CM039043.1 99.87 True indel: indel (<= 5bp) 93775848 98924776 98107535 103256294 NC_060934.1 CM039043.1 99.78 True local misassembly 98924882 101534109 103256524 105867618 NC_060934.1 CM039043.1 99.76 True local misassembly 101534522 106994992 105868265 111326895 NC_060934.1 CM039043.1 99.78 True indel: stretch of mismatches 106995017 112126556 111326920 116459122 NC_060934.1 CM039043.1 99.82 True relocation, inconsistency = 7005 112133858 114977141 116459419 119302049 NC_060934.1 CM039043.1 99.8 True local misassembly 114977430 117467258 119302485 121792498 NC_060934.1 CM039043.1 99.83 True indel: indel (> 5bp) 117467305 120290158 121792577 124615525 NC_060934.1 CM039043.1 99.75 True local misassembly 120290327 120851085 124616144 125177049 NC_060934.1 CM039043.1 99.75 True indel: indel (> 5bp) 120851303 123353541 125177251 127680085 NC_060934.1 CM039043.1 99.76 True local misassembly 123353596 123482264 127680529 127809211 NC_060934.1 CM039043.1 99.63 True relocation, inconsistency = -12715 123476399 125031735 127816061 129372365 NC_060934.1 CM039043.1 99.75 True local misassembly 125032239 125349615 129373000 129690340 NC_060934.1 CM039043.1 99.55 True local misassembly 125351029 125386675 129692081 129727758 NC_060934.1 CM039043.1 99.59 True local misassembly 125387004 126939109 129727992 131281081 NC_060934.1 CM039043.1 99.83 True local misassembly 126939111 127459265 131281883 131802090 NC_060934.1 CM039043.1 99.79 True indel: indel (> 5bp) 127459365 129363472 131802272 133703330 NC_060934.1 CM039043.1 99.48 True relocation, inconsistency = 22608 129386081 132126756 133703331 136438862 NC_060934.1 CM039043.1 99.5 True local misassembly 132129282 132821940 136438900 137128607 NC_060934.1 CM039043.1 98.95 True local misassembly 132822539 132855981 137128736 137162490 NC_060934.1 CM039043.1 98.16 True local misassembly 132857230 132859032 137162821 137164663 NC_060934.1 CM039043.1 96.92 True local misassembly 132859728 133038113 137165411 137344250 NC_060934.1 CM039043.1 98.65 True local misassembly 133038389 133306753 137344386 137612097 NC_060934.1 CM039043.1 98.96 True local misassembly 133309913 133334642 137613861 137637995 NC_060934.1 CM039043.1 97.14 True local misassembly 133335441 133388975 137639054 137691666 NC_060934.1 CM039043.1 97.48 True indel: indel (> 5bp) 133389104 133724171 137691838 138027434 NC_060934.1 CM039043.1 99.48 True local misassembly 133724292 133838031 138027981 138141887 NC_060934.1 CM039043.1 98.61 True local misassembly 133838060 134015461 138142021 138319831 NC_060934.1 CM039043.1 98.87 True local misassembly 134016390 134019583 138321170 138324454 NC_060934.1 CM039043.1 96.09 True local misassembly 134019650 134060873 138325031 138366710 NC_060934.1 CM039043.1 97.92 True local misassembly 134061764 134651176 138367013 138952749 NC_060934.1 CM039043.1 98.9 True CONTIG CM039043.1 138952756 misassembled 38367 64307 1 25941 NC_060935.1 CM039044.1 100.0 True indel: indel (<= 5bp) 64309 74370 25942 36003 NC_060935.1 CM039044.1 100.0 True indel: indel (<= 5bp) 74447 87504 36076 49133 NC_060935.1 CM039044.1 99.99 True indel: indel (> 5bp) 87505 90843 49146 52484 NC_060935.1 CM039044.1 99.94 True local misassembly 90920 93787 53333 56200 NC_060935.1 CM039044.1 99.9 True indel: indel (> 5bp) 93788 94994 56278 57484 NC_060935.1 CM039044.1 100.0 True indel: indel (<= 5bp) 94996 95607 57485 58096 NC_060935.1 CM039044.1 99.51 True local misassembly 95993 96991 58251 59249 NC_060935.1 CM039044.1 99.6 True local misassembly 97146 172705 59250 134809 NC_060935.1 CM039044.1 99.99 True indel: indel (<= 5bp) 172707 177079 134810 139182 NC_060935.1 CM039044.1 99.82 True indel: indel (<= 5bp) 177080 180366 139184 142470 NC_060935.1 CM039044.1 99.97 True indel: indel (> 5bp) 180379 181860 142471 143952 NC_060935.1 CM039044.1 99.87 True indel: indel (<= 5bp) 181861 186024 143954 148117 NC_060935.1 CM039044.1 99.86 True indel: indel (<= 5bp) 186025 186634 148119 148728 NC_060935.1 CM039044.1 99.84 True indel: indel (<= 5bp) 186636 196791 148729 158884 NC_060935.1 CM039044.1 99.87 True indel: indel (<= 5bp) 196792 199623 158888 161719 NC_060935.1 CM039044.1 99.89 True indel: indel (<= 5bp) 199625 201448 161720 163543 NC_060935.1 CM039044.1 99.67 True local misassembly 202619 205503 164607 167491 NC_060935.1 CM039044.1 99.93 True indel: indel (<= 5bp) 205504 206235 167493 168224 NC_060935.1 CM039044.1 99.59 True local misassembly 208784 209425 169322 169963 NC_060935.1 CM039044.1 96.57 True local misassembly 216514 217028 172136 172650 NC_060935.1 CM039044.1 100.0 True local misassembly 219925 224621 172651 177347 NC_060935.1 CM039044.1 99.68 True indel: indel (<= 5bp) 224623 227223 177348 179948 NC_060935.1 CM039044.1 99.85 True local misassembly 227372 228429 180342 181399 NC_060935.1 CM039044.1 99.43 True indel: indel (<= 5bp) 228431 228948 181400 181917 NC_060935.1 CM039044.1 99.42 True indel: indel (<= 5bp) 228950 229648 181918 182616 NC_060935.1 CM039044.1 99.71 True indel: indel (<= 5bp) 229653 232524 182617 185488 NC_060935.1 CM039044.1 99.72 True indel: indel (> 5bp) 232558 235543 185489 188474 NC_060935.1 CM039044.1 99.67 True local misassembly 235656 236931 188801 190076 NC_060935.1 CM039044.1 99.61 True indel: indel (> 5bp) 237139 353070 190210 306732 NC_060935.1 CM039044.1 98.7 True inversion 353071 359178 312840 306733 NC_060935.1 CM039044.1 99.88 True inversion 359179 446990 312841 399949 NC_060935.1 CM039044.1 96.27 True local misassembly 447765 456425 401558 410339 NC_060935.1 CM039044.1 96.7 True local misassembly 458131 460654 411487 414010 NC_060935.1 CM039044.1 99.88 True indel: indel (> 5bp) 460675 469198 414011 422534 NC_060935.1 CM039044.1 99.92 True indel: indel (<= 5bp) 469199 470349 422539 423689 NC_060935.1 CM039044.1 99.83 True local misassembly 471241 473331 424400 426490 NC_060935.1 CM039044.1 100.0 True local misassembly 473332 476626 426818 430112 NC_060935.1 CM039044.1 99.76 True local misassembly 476918 478871 431775 433728 NC_060935.1 CM039044.1 99.8 True indel: indel (> 5bp) 478899 480847 433729 435677 NC_060935.1 CM039044.1 99.85 True indel: indel (> 5bp) 481186 482046 436051 436911 NC_060935.1 CM039044.1 99.77 True indel: indel (> 5bp) 482250 691435 437082 645622 NC_060935.1 CM039044.1 97.99 True local misassembly 692987 1080350 647490 1031557 NC_060935.1 CM039044.1 97.42 True local misassembly 1084735 1148859 1035945 1100332 NC_060935.1 CM039044.1 99.38 True local misassembly 1149589 1408343 1100874 1359008 NC_060935.1 CM039044.1 99.16 True indel: indel (> 5bp) 1408351 1500877 1359046 1452567 NC_060935.1 CM039044.1 97.46 True local misassembly 1506210 1748320 1452568 1691332 NC_060935.1 CM039044.1 97.96 True local misassembly 1748650 1749550 1691403 1692303 NC_060935.1 CM039044.1 99.22 True indel: indel (> 5bp) 1749626 1750278 1692304 1692956 NC_060935.1 CM039044.1 97.86 True indel: indel (> 5bp) 1750622 1754629 1693257 1697264 NC_060935.1 CM039044.1 99.78 True local misassembly 1756289 1760088 1697664 1701463 NC_060935.1 CM039044.1 99.97 True indel: indel (<= 5bp) 1760089 1769824 1701466 1711201 NC_060935.1 CM039044.1 99.97 True indel: indel (> 5bp) 1769846 3186420 1711274 3128567 NC_060935.1 CM039044.1 99.66 True local misassembly 3186947 5012828 3129178 4965557 NC_060935.1 CM039044.1 99.09 True relocation, inconsistency = -8631 5011409 5428402 4972769 5389840 NC_060935.1 CM039044.1 99.84 True indel: stretch of mismatches 5428436 5902021 5389874 5864583 NC_060935.1 CM039044.1 99.18 True local misassembly 5902138 6918545 5864796 6880953 NC_060935.1 CM039044.1 99.76 True local misassembly 6919145 7172185 6881036 7134078 NC_060935.1 CM039044.1 99.82 True local misassembly 7173963 8282629 7134079 8229869 NC_060935.1 CM039044.1 98.49 True indel: indel (> 5bp) 8282760 9283737 8229944 9230232 NC_060935.1 CM039044.1 99.75 True indel: indel (> 5bp) 9283867 11331424 9230324 11273717 NC_060935.1 CM039044.1 99.51 True local misassembly 11336074 12732997 11278923 12669689 NC_060935.1 CM039044.1 99.36 True local misassembly 12733463 14252958 12670806 14190149 NC_060935.1 CM039044.1 99.79 True local misassembly 14253519 22538024 14190381 22468348 NC_060935.1 CM039044.1 99.7 True indel: indel (> 5bp) 22538169 25051160 22468535 24972662 NC_060935.1 CM039044.1 99.41 True local misassembly 25051272 25659852 24973070 25581788 NC_060935.1 CM039044.1 99.11 True indel: indel (> 5bp) 25659880 26197281 25581810 26119262 NC_060935.1 CM039044.1 99.43 True local misassembly 26197877 26669934 26119852 26592211 NC_060935.1 CM039044.1 99.18 True local misassembly 26670012 29126244 26592774 29048406 NC_060935.1 CM039044.1 99.81 True local misassembly 29126394 32657646 29054154 32585272 NC_060935.1 CM039044.1 99.84 True local misassembly 32658077 34163664 32585932 34090504 NC_060935.1 CM039044.1 99.7 True indel: indel (> 5bp) 34163718 36427083 34090526 36352786 NC_060935.1 CM039044.1 99.76 True local misassembly 36427733 36650344 36353945 36576590 NC_060935.1 CM039044.1 99.89 True indel: indel (> 5bp) 36650841 39693229 36577022 39619307 NC_060935.1 CM039044.1 99.85 True indel: stretch of mismatches 39693256 41450857 39619334 41376725 NC_060935.1 CM039044.1 99.83 True indel: indel (> 5bp) 41451087 43100756 41376886 43028281 NC_060935.1 CM039044.1 99.55 True relocation, inconsistency = 8192 43108949 43163404 43028282 43082154 NC_060935.1 CM039044.1 98.71 True local misassembly 43163822 46878084 43082232 46796103 NC_060935.1 CM039044.1 99.86 True local misassembly 46878886 48861741 46796104 48768822 NC_060935.1 CM039044.1 99.19 True local misassembly 48861728 48881383 48769837 48789487 NC_060935.1 CM039044.1 99.69 True local misassembly 48883600 49099293 48789488 49006205 NC_060935.1 CM039044.1 99.02 True local misassembly 49099965 49873023 49006206 49779040 NC_060935.1 CM039044.1 99.64 True local misassembly 49873213 50313723 49779084 50220040 NC_060935.1 CM039044.1 99.49 True relocation, inconsistency = 165652 50479376 50519569 50260175 50220041 NC_060935.1 CM039044.1 99.38 True local misassembly 50313724 50477847 50425818 50261603 NC_060935.1 CM039044.1 99.58 True relocation, inconsistency = 41722 50519570 50714760 50425819 50621521 NC_060935.1 CM039044.1 99.4 True relocation, scaffold gap is present, inconsistency = -19460 50695314 50858012 50621535 50783771 NC_060935.1 CM039044.1 99.37 True local misassembly 50858870 50912400 50783772 50837140 NC_060935.1 CM039044.1 99.3 True indel: stretch of mismatches 50912577 50935189 50837317 50859762 NC_060935.1 CM039044.1 99.04 True local misassembly 50937929 51035968 50859763 50958134 NC_060935.1 CM039044.1 98.81 True local misassembly 51038105 51041062 50960271 50963228 NC_060935.1 CM039044.1 97.8 True indel: indel (<= 5bp) 51041492 51042721 50963657 50964886 NC_060935.1 CM039044.1 97.89 True relocation, inconsistency = 314253 51365565 51371612 50973477 50979505 NC_060935.1 CM039044.1 97.44 True relocation, inconsistency = -18691 51352922 51357581 50979506 50984164 NC_060935.1 CM039044.1 97.86 True local misassembly 51363530 51374588 50984165 50995224 NC_060935.1 CM039044.1 97.81 True relocation, inconsistency = 1986212 53360801 53366260 50995225 51000683 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = 644486 54010747 54019124 51000684 51009024 NC_060935.1 CM039044.1 97.45 True relocation, inconsistency = -1208294 52810831 52816451 51009025 51014613 NC_060935.1 CM039044.1 97.05 True relocation, inconsistency = 1257575 54074028 54079297 51014615 51019883 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = -2649410 51429888 51439597 51019884 51029575 NC_060935.1 CM039044.1 97.73 True relocation, inconsistency = -241165 51198433 51203616 51029576 51034741 NC_060935.1 CM039044.1 97.69 True relocation, inconsistency = 3127672 54331289 54342255 51034742 51045708 NC_060935.1 CM039044.1 97.72 True relocation, inconsistency = -792362 53549894 53554939 51045709 51050754 NC_060935.1 CM039044.1 97.8 True relocation, inconsistency = 341084 53896024 53907043 51050755 51061771 NC_060935.1 CM039044.1 97.81 True local misassembly 53903644 53907565 51061772 51065693 NC_060935.1 CM039044.1 97.63 True relocation, inconsistency = 90941 53998507 54007006 51065694 51074191 NC_060935.1 CM039044.1 97.83 True relocation, inconsistency = -169131 53837876 53850538 51074192 51086852 NC_060935.1 CM039044.1 97.79 True local misassembly 53852323 53864496 51086938 51099107 NC_060935.1 CM039044.1 97.47 True relocation, inconsistency = -13598 53850899 53853130 51099108 51101338 NC_060935.1 CM039044.1 97.65 True local misassembly 53846332 53857640 51101339 51112643 NC_060935.1 CM039044.1 97.65 True relocation, inconsistency = 113887 53971528 53972451 51112644 51113567 NC_060935.1 CM039044.1 97.24 True local misassembly 53969053 53981705 51113568 51126180 NC_060935.1 CM039044.1 97.19 True relocation, inconsistency = -2797081 51184625 51192077 51126181 51133630 NC_060935.1 CM039044.1 97.97 True relocation, inconsistency = 2630499 53822577 53832374 51133631 51143427 NC_060935.1 CM039044.1 97.77 True relocation, inconsistency = -2677577 51154798 51160887 51143428 51149516 NC_060935.1 CM039044.1 98.13 True relocation, inconsistency = 2429987 53590875 53600694 51149517 51159344 NC_060935.1 CM039044.1 98.07 True relocation, inconsistency = 226351 53827046 53833060 51159345 51165359 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = -2409731 51423330 51429929 51165360 51171961 NC_060935.1 CM039044.1 98.11 True relocation, inconsistency = 2556766 53986696 53992999 51171962 51178265 NC_060935.1 CM039044.1 97.96 True local misassembly 53987901 54003492 51178266 51193857 NC_060935.1 CM039044.1 97.71 True relocation, inconsistency = -2652788 51350712 51363727 51193865 51206887 NC_060935.1 CM039044.1 97.79 True relocation, inconsistency = 97724 51461452 51465912 51206888 51211351 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = 2517670 53983583 53992940 51211352 51220710 NC_060935.1 CM039044.1 97.73 True relocation, inconsistency = 360337 54353278 54368356 51220711 51235789 NC_060935.1 CM039044.1 97.41 True relocation, inconsistency = -2494853 51873560 51881122 51235846 51243414 NC_060935.1 CM039044.1 97.92 True relocation, inconsistency = 435171 52316294 52325070 51243415 51252194 NC_060935.1 CM039044.1 98.2 True relocation, inconsistency = -94342 52230729 52233918 51252195 51255384 NC_060935.1 CM039044.1 98.28 True local misassembly 52231369 52245588 51255385 51269605 NC_060935.1 CM039044.1 98.33 True relocation, inconsistency = 1716343 53962154 53970580 51269828 51278253 NC_060935.1 CM039044.1 97.58 True relocation, inconsistency = -1654298 52316283 52325210 51278254 51287181 NC_060935.1 CM039044.1 98.12 True relocation, inconsistency = -323833 52001378 52006672 51287182 51292479 NC_060935.1 CM039044.1 98.11 True relocation, inconsistency = -39945 51967283 51975446 51293035 51301198 NC_060935.1 CM039044.1 98.2 True relocation, inconsistency = 325534 52300981 52308089 51301199 51308296 NC_060935.1 CM039044.1 98.25 True relocation, inconsistency = 2024833 54332923 54344511 51308297 51319883 NC_060935.1 CM039044.1 97.9 True relocation, inconsistency = -631419 53713320 53722121 51320111 51328912 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = -53879 53668243 53673953 51328913 51334617 NC_060935.1 CM039044.1 97.72 True relocation, inconsistency = -1013876 52660216 52670143 51334756 51344851 NC_060935.1 CM039044.1 96.23 True relocation, inconsistency = -875234 51794910 51800559 51344852 51350498 NC_060935.1 CM039044.1 97.98 True relocation, inconsistency = 30599 51831159 51837505 51350499 51356847 NC_060935.1 CM039044.1 98.01 True relocation, inconsistency = 2193849 54031355 54038577 51356848 51364070 NC_060935.1 CM039044.1 97.79 True relocation, inconsistency = -2187899 51850679 51861167 51364071 51374559 NC_060935.1 CM039044.1 98.11 True relocation, inconsistency = -15300 51845868 51851428 51374560 51380120 NC_060935.1 CM039044.1 98.23 True relocation, inconsistency = -697908 51153603 51162499 51380203 51389101 NC_060935.1 CM039044.1 98.01 True relocation, inconsistency = 2662280 53824982 53834655 51389304 51398977 NC_060935.1 CM039044.1 97.79 True relocation, inconsistency = 11898 53846554 53853961 51398978 51406383 NC_060935.1 CM039044.1 97.82 True relocation, inconsistency = -1538712 52315250 52327913 51406384 51419044 NC_060935.1 CM039044.1 98.22 True relocation, inconsistency = -93492 52234422 52245258 51419045 51429882 NC_060935.1 CM039044.1 98.06 True relocation, inconsistency = 1728241 53973500 53979207 51429883 51435590 NC_060935.1 CM039044.1 97.48 True relocation, inconsistency = -1429432 52549776 52556391 51435591 51442205 NC_060935.1 CM039044.1 98.16 True relocation, inconsistency = -949701 51606748 51613767 51442263 51449274 NC_060935.1 CM039044.1 98.04 True relocation, inconsistency = 2746267 54360035 54369702 51449275 51458938 NC_060935.1 CM039044.1 97.85 True relocation, inconsistency = -307639 54062064 54069378 51458939 51466246 NC_060935.1 CM039044.1 97.86 True relocation, inconsistency = -2727583 51342134 51349293 51466585 51473570 NC_060935.1 CM039044.1 95.84 True relocation, inconsistency = 1986212 53335551 53344848 51473616 51482916 NC_060935.1 CM039044.1 97.94 True relocation, inconsistency = -1830690 51514319 51518831 51483077 51487587 NC_060935.1 CM039044.1 98.13 True relocation, inconsistency = 2484521 54003353 54012597 51487588 51496831 NC_060935.1 CM039044.1 97.93 True relocation, inconsistency = -2219346 51793252 51797442 51496832 51501022 NC_060935.1 CM039044.1 98.44 True relocation, inconsistency = -271125 51526318 51535045 51501023 51509750 NC_060935.1 CM039044.1 98.51 True relocation, inconsistency = -259192 51275854 51276695 51509751 51510592 NC_060935.1 CM039044.1 98.87 True indel: indel (<= 5bp) 51276696 51277496 51510594 51511394 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = -206691 51070806 51077749 51511395 51518338 NC_060935.1 CM039044.1 98.05 True relocation, inconsistency = 1219611 52297361 52307342 51518339 51528319 NC_060935.1 CM039044.1 98.59 True relocation, inconsistency = -1193261 51114082 51121316 51528320 51535555 NC_060935.1 CM039044.1 98.07 True relocation, inconsistency = 2565429 53686746 53689975 51535556 51538785 NC_060935.1 CM039044.1 97.9 True relocation, inconsistency = -1447811 52242340 52250838 51538961 51547459 NC_060935.1 CM039044.1 98.02 True relocation, inconsistency = -406960 51843879 51853128 51547460 51556709 NC_060935.1 CM039044.1 98.21 True relocation, inconsistency = 1294576 53147705 53154590 51556710 51563595 NC_060935.1 CM039044.1 97.71 True relocation, inconsistency = -916513 52238091 52247338 51563609 51572858 NC_060935.1 CM039044.1 98.04 True relocation, inconsistency = 329410 52576978 52584175 51573088 51580287 NC_060935.1 CM039044.1 98.22 True relocation, inconsistency = 1536522 54120698 54126072 51580288 51585662 NC_060935.1 CM039044.1 98.3 True relocation, inconsistency = 116424 54242497 54246817 51585663 51589986 NC_060935.1 CM039044.1 98.05 True relocation, inconsistency = -2639192 51607626 51617473 51589987 51599834 NC_060935.1 CM039044.1 98.23 True relocation, inconsistency = 174235 51791709 51793795 51599835 51601921 NC_060935.1 CM039044.1 98.29 True local misassembly 51789546 51800623 51601922 51612999 NC_060935.1 CM039044.1 98.27 True local misassembly 51793825 51798096 51613000 51617271 NC_060935.1 CM039044.1 98.18 True relocation, inconsistency = 2520189 54318286 54327512 51617272 51626502 NC_060935.1 CM039044.1 97.99 True relocation, inconsistency = -3210446 51117067 51121904 51626503 51631340 NC_060935.1 CM039044.1 98.15 True relocation, inconsistency = 467576 51589481 51594887 51631341 51636746 NC_060935.1 CM039044.1 98.15 True relocation, inconsistency = 2723324 54318377 54329689 51636912 51648228 NC_060935.1 CM039044.1 97.86 True relocation, inconsistency = -481872 53847818 53850840 51648229 51651251 NC_060935.1 CM039044.1 97.98 True local misassembly 53844892 53850434 51651252 51656795 NC_060935.1 CM039044.1 97.79 True relocation, inconsistency = -193229 53657206 53665053 51656796 51664643 NC_060935.1 CM039044.1 98.2 True local misassembly 53662505 53664561 51664644 51666701 NC_060935.1 CM039044.1 98.35 True relocation, inconsistency = -311024 53353538 53365187 51666702 51678350 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = 889242 54254430 54262322 51678351 51686250 NC_060935.1 CM039044.1 97.6 True relocation, inconsistency = -166555 54095768 54104871 51686251 51695355 NC_060935.1 CM039044.1 97.73 True relocation, inconsistency = -2262693 51842179 51852230 51695356 51705407 NC_060935.1 CM039044.1 98.41 True relocation, inconsistency = -7650 51844581 51848978 51705408 51709805 NC_060935.1 CM039044.1 98.38 True local misassembly 51848129 51854190 51709806 51715867 NC_060935.1 CM039044.1 98.2 True relocation, inconsistency = -370569 51483622 51493701 51715868 51725950 NC_060935.1 CM039044.1 98.04 True relocation, inconsistency = 2550818 54044520 54049194 51725951 51730621 NC_060935.1 CM039044.1 97.64 True relocation, inconsistency = -2463279 51585916 51592825 51730622 51737533 NC_060935.1 CM039044.1 97.87 True relocation, inconsistency = 2454780 54047606 54054265 51737534 51744194 NC_060935.1 CM039044.1 97.37 True local misassembly 54047467 54056389 51744195 51752951 NC_060935.1 CM039044.1 95.8 True relocation, inconsistency = -2701238 51355152 51361700 51752952 51759504 NC_060935.1 CM039044.1 98.12 True relocation, inconsistency = 387714 51750728 51751555 51760818 51761645 NC_060935.1 CM039044.1 97.58 True indel: indel (<= 5bp) 51751557 51752699 51761646 51762788 NC_060935.1 CM039044.1 97.99 True indel: indel (<= 5bp) 51752704 51754106 51762789 51764191 NC_060935.1 CM039044.1 98.29 True indel: indel (<= 5bp) 51754108 51755117 51764192 51765201 NC_060935.1 CM039044.1 98.32 True indel: indel (<= 5bp) 51755118 51756278 51765203 51766363 NC_060935.1 CM039044.1 97.42 True local misassembly 51756621 51758275 51766364 51768018 NC_060935.1 CM039044.1 98.97 True relocation, inconsistency = -412696 51354999 51359246 51777438 51781686 NC_060935.1 CM039044.1 98.33 True local misassembly 51354999 51361700 51781687 51788389 NC_060935.1 CM039044.1 98.36 True local misassembly 51355753 51357893 51788390 51790530 NC_060935.1 CM039044.1 98.24 True relocation, inconsistency = 300171 51658065 51663211 51790531 51795678 NC_060935.1 CM039044.1 98.18 True local misassembly 51661512 51668464 51795679 51802803 NC_060935.1 CM039044.1 95.78 True relocation, inconsistency = 693224 52361689 52370520 51802804 51811637 NC_060935.1 CM039044.1 98.15 True relocation, inconsistency = -185115 52185406 52191218 51811638 51817450 NC_060935.1 CM039044.1 98.01 True relocation, inconsistency = -877962 51313257 51318226 51817451 51822423 NC_060935.1 CM039044.1 98.28 True local misassembly 51313376 51318226 51822671 51827523 NC_060935.1 CM039044.1 98.35 True relocation, inconsistency = 19545 51337834 51345139 51827586 51834890 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = 1886786 53231926 53242182 51834891 51845142 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = -1906336 51335847 51342712 51845143 51852020 NC_060935.1 CM039044.1 97.58 True relocation, inconsistency = -243218 51099495 51108568 51852021 51861096 NC_060935.1 CM039044.1 97.98 True relocation, inconsistency = 1234907 52343476 52345606 51861097 51863230 NC_060935.1 CM039044.1 98.07 True relocation, inconsistency = -919466 51426141 51437143 51863231 51874237 NC_060935.1 CM039044.1 97.67 True relocation, inconsistency = 832774 52269918 52270844 51874238 51875165 NC_060935.1 CM039044.1 98.23 True relocation, inconsistency = -1032297 51238548 51245022 51875166 51881640 NC_060935.1 CM039044.1 97.88 True local misassembly 51239074 51240861 51881641 51883427 NC_060935.1 CM039044.1 97.93 True relocation, inconsistency = 96705 51337567 51345139 51883428 51891000 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = 1886786 53231926 53240817 51891001 51899885 NC_060935.1 CM039044.1 97.83 True relocation, inconsistency = 805945 54046763 54049048 51899886 51902175 NC_060935.1 CM039044.1 97.7 True relocation, inconsistency = -2949554 51099495 51108548 51902176 51911233 NC_060935.1 CM039044.1 97.97 True relocation, inconsistency = 2334803 53443352 53447723 51911234 51915605 NC_060935.1 CM039044.1 97.64 True relocation, inconsistency = 409918 53857642 53866370 51915606 51924337 NC_060935.1 CM039044.1 97.46 True relocation, inconsistency = -1423478 52442893 52449495 51924338 51930944 NC_060935.1 CM039044.1 97.84 True relocation, inconsistency = -104184 52345608 52349127 51931241 51934760 NC_060935.1 CM039044.1 97.9 True relocation, inconsistency = 92285 52441413 52449495 51934761 51942847 NC_060935.1 CM039044.1 97.81 True relocation, inconsistency = -104184 52345608 52351975 51943144 51949511 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = 1505563 53857639 53861372 51949612 51953345 NC_060935.1 CM039044.1 97.43 True relocation, inconsistency = -2463273 51398100 51407116 51953346 51962365 NC_060935.1 CM039044.1 97.67 True relocation, inconsistency = 2264945 53672160 53678300 51962464 51968783 NC_060935.1 CM039044.1 95.44 True relocation, inconsistency = -2342949 51335352 51343094 51968784 51976533 NC_060935.1 CM039044.1 97.56 True relocation, inconsistency = 1888486 53231944 53239364 51976897 51984315 NC_060935.1 CM039044.1 97.8 True relocation, inconsistency = 118110 53357475 53363249 51984316 51990086 NC_060935.1 CM039044.1 97.83 True local misassembly 53356579 53359978 51990216 51993612 NC_060935.1 CM039044.1 97.86 True local misassembly 53356579 53363249 51993613 52000280 NC_060935.1 CM039044.1 97.81 True local misassembly 53358150 53363249 52000281 52005376 NC_060935.1 CM039044.1 97.84 True relocation, inconsistency = -8498 53356579 53363249 52007204 52013870 NC_060935.1 CM039044.1 97.81 True local misassembly 53361550 53362102 52013871 52014423 NC_060935.1 CM039044.1 97.83 True relocation, inconsistency = -2249819 51112284 51121314 52014424 52023468 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = 44196 51165511 51171357 52023469 52029316 NC_060935.1 CM039044.1 97.73 True relocation, inconsistency = 1703033 52874391 52879394 52029317 52034318 NC_060935.1 CM039044.1 98.08 True relocation, inconsistency = 1025539 53904934 53913942 52034319 52043328 NC_060935.1 CM039044.1 97.78 True relocation, inconsistency = -152964 53760979 53768183 52043329 52050536 NC_060935.1 CM039044.1 97.64 True relocation, inconsistency = -2433524 51334660 51345835 52050537 52061715 NC_060935.1 CM039044.1 97.8 True relocation, inconsistency = 2709736 54055572 54059246 52061716 52065395 NC_060935.1 CM039044.1 97.47 True relocation, inconsistency = -2959752 51099495 51105271 52065396 52071175 NC_060935.1 CM039044.1 97.98 True relocation, inconsistency = 2169781 53275053 53286650 52071176 52082776 NC_060935.1 CM039044.1 97.66 True relocation, inconsistency = -841737 52444914 52448815 52082777 52086681 NC_060935.1 CM039044.1 97.77 True relocation, inconsistency = 939624 53388440 53392563 52086682 52090811 NC_060935.1 CM039044.1 97.54 True relocation, inconsistency = 824660 54217224 54223918 52090812 52097509 NC_060935.1 CM039044.1 97.74 True relocation, inconsistency = -1133663 53090256 53096172 52097510 52103429 NC_060935.1 CM039044.1 97.77 True relocation, inconsistency = -1605822 51490351 51498387 52103430 52111476 NC_060935.1 CM039044.1 97.51 True relocation, inconsistency = 1571150 53069538 53075170 52111477 52117109 NC_060935.1 CM039044.1 97.86 True relocation, inconsistency = -1958837 51116334 51124923 52117110 52125709 NC_060935.1 CM039044.1 98.12 True relocation, inconsistency = 3017544 54142468 54143780 52125710 52127025 NC_060935.1 CM039044.1 97.71 True relocation, inconsistency = -528937 53614844 53619703 52127026 52131891 NC_060935.1 CM039044.1 97.82 True relocation, inconsistency = -2456306 51163398 51169828 52131892 52138326 NC_060935.1 CM039044.1 97.69 True relocation, inconsistency = 2799115 53968944 53978476 52138327 52147868 NC_060935.1 CM039044.1 97.12 True relocation, inconsistency = -2811013 51167464 51171055 52147869 52151462 NC_060935.1 CM039044.1 97.79 True relocation, inconsistency = -7647 51163409 51171666 52151463 52159721 NC_060935.1 CM039044.1 97.82 True relocation, inconsistency = 187122 51358789 51364836 52159722 52165769 NC_060935.1 CM039044.1 98.04 True relocation, inconsistency = -33140 51331697 51336468 52165770 52170542 NC_060935.1 CM039044.1 97.91 True relocation, inconsistency = 2444568 53781037 53790624 52170543 52180138 NC_060935.1 CM039044.1 97.85 True local misassembly 53785528 53790624 52180139 52185238 NC_060935.1 CM039044.1 97.84 True relocation, inconsistency = -310492 53480219 53484669 52185325 52189776 NC_060935.1 CM039044.1 97.61 True relocation, inconsistency = 298598 53783268 53792097 52189777 52198612 NC_060935.1 CM039044.1 97.59 True local misassembly 53785543 53793938 52198853 52207252 NC_060935.1 CM039044.1 97.93 True relocation, inconsistency = -2016217 51777722 51780356 52207253 52209887 NC_060935.1 CM039044.1 97.93 True relocation, inconsistency = 2404619 54184976 54191799 52209888 52216714 NC_060935.1 CM039044.1 97.99 True relocation, scaffold gap is present, inconsistency = 52896 54245236 54256127 52217255 52228146 NC_060935.1 CM039044.1 98.01 True relocation, inconsistency = 98580 54354814 54367615 52228253 52241052 NC_060935.1 CM039044.1 97.75 True relocation, inconsistency = -158069 54209547 54211487 52241053 52242993 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = -591821 53619667 53626636 52242994 52249964 NC_060935.1 CM039044.1 98.21 True local misassembly 53619838 53625915 52249965 52256043 NC_060935.1 CM039044.1 98.21 True relocation, inconsistency = 460100 54086016 54092790 52256044 52262818 NC_060935.1 CM039044.1 98.1 True local misassembly 54096190 54108059 52262819 52274689 NC_060935.1 CM039044.1 97.78 True local misassembly 54103810 54107220 52274690 52278100 NC_060935.1 CM039044.1 97.71 True local misassembly 54102971 54113952 52278101 52289083 NC_060935.1 CM039044.1 97.81 True relocation, inconsistency = -1973869 52140084 52143481 52289084 52292481 NC_060935.1 CM039044.1 97.93 True relocation, inconsistency = 1911825 54055376 54062928 52292551 52300104 NC_060935.1 CM039044.1 97.88 True relocation, inconsistency = -15298 54047631 54055364 52300105 52307839 NC_060935.1 CM039044.1 97.75 True local misassembly 54056215 54062523 52307840 52314149 NC_060935.1 CM039044.1 97.88 True relocation, inconsistency = -2646857 51415667 51424546 52314150 52323031 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = 2838910 54263457 54269475 52323032 52329054 NC_060935.1 CM039044.1 97.68 True relocation, inconsistency = -2322321 51947394 51954349 52329294 52336249 NC_060935.1 CM039044.1 97.94 True relocation, inconsistency = 1932237 53886587 53894771 52336250 52344434 NC_060935.1 CM039044.1 97.87 True relocation, inconsistency = 464877 54359649 54375119 52344435 52359901 NC_060935.1 CM039044.1 97.73 True relocation, inconsistency = -3148923 51226445 51235398 52360150 52369106 NC_060935.1 CM039044.1 98.27 True relocation, inconsistency = 2864234 54099633 54108059 52369107 52377534 NC_060935.1 CM039044.1 97.75 True local misassembly 54109760 54110537 52377535 52378312 NC_060935.1 CM039044.1 97.53 True relocation, inconsistency = -11049 54099572 54107987 52378396 52386812 NC_060935.1 CM039044.1 97.71 True local misassembly 54104588 54105520 52386813 52387745 NC_060935.1 CM039044.1 97.8 True indel: stretch of mismatches 54105521 54112206 52387746 52394431 NC_060935.1 CM039044.1 97.77 True relocation, inconsistency = -64594 54047613 54053676 52394432 52400495 NC_060935.1 CM039044.1 97.83 True relocation, inconsistency = 49294 54102971 54114007 52400496 52411533 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = -2489623 51624385 51625205 52411534 52412354 NC_060935.1 CM039044.1 98.24 True local misassembly 51619256 51626394 52412355 52419493 NC_060935.1 CM039044.1 98.28 True local misassembly 51630645 51632803 52419494 52421652 NC_060935.1 CM039044.1 98.16 True relocation, inconsistency = 2468374 54101178 54110609 52421653 52431084 NC_060935.1 CM039044.1 97.89 True local misassembly 54104660 54107858 52431085 52434283 NC_060935.1 CM039044.1 97.8 True relocation, inconsistency = -8499 54099661 54109096 52434585 52444021 NC_060935.1 CM039044.1 97.57 True relocation, inconsistency = -16148 54093280 54104639 52444353 52455714 NC_060935.1 CM039044.1 97.56 True relocation, inconsistency = -1142838 52961802 52971214 52455715 52465128 NC_060935.1 CM039044.1 97.77 True relocation, inconsistency = 1165784 54136999 54142947 52465129 52471079 NC_060935.1 CM039044.1 97.75 True relocation, inconsistency = -60341 54082607 54089594 52471080 52478063 NC_060935.1 CM039044.1 97.57 True relocation, inconsistency = -227780 53861815 53870014 52478064 52486263 NC_060935.1 CM039044.1 97.38 True relocation, inconsistency = 260924 54130984 54139071 52486309 52494393 NC_060935.1 CM039044.1 97.7 True relocation, inconsistency = 211601 54350673 54363649 52494394 52507372 NC_060935.1 CM039044.1 97.7 True relocation, inconsistency = -444478 53919172 53923776 52507373 52511977 NC_060935.1 CM039044.1 97.24 True relocation, inconsistency = 393486 54317263 54328422 52511978 52523134 NC_060935.1 CM039044.1 98.04 True local misassembly 54325875 54329886 52523135 52527146 NC_060935.1 CM039044.1 97.96 True relocation, inconsistency = -73083 54256926 54274141 52527269 52544490 NC_060935.1 CM039044.1 97.92 True relocation, inconsistency = -237944 54036198 54038830 52544491 52547121 NC_060935.1 CM039044.1 97.55 True relocation, inconsistency = -198030 53840801 53853772 52547122 52560089 NC_060935.1 CM039044.1 97.65 True relocation, inconsistency = -1266078 52587754 52589908 52560149 52562303 NC_060935.1 CM039044.1 97.94 True relocation, inconsistency = 1288345 53878254 53896712 52562304 52580757 NC_060935.1 CM039044.1 97.65 True relocation, inconsistency = -11898 53884815 53888510 52580758 52584453 NC_060935.1 CM039044.1 97.67 True local misassembly 53893611 53908966 52584454 52599803 NC_060935.1 CM039044.1 97.54 True relocation, inconsistency = 24646 53933613 53944992 52599804 52611182 NC_060935.1 CM039044.1 97.61 True relocation, inconsistency = 13600 53958593 53972510 52611183 52625100 NC_060935.1 CM039044.1 97.27 True local misassembly 53979311 53992912 52625101 52638701 NC_060935.1 CM039044.1 97.81 True local misassembly 53995463 54021468 52638702 52665378 NC_060935.1 CM039044.1 95.31 True relocation, inconsistency = -27199 53994270 53999460 52665379 52670568 NC_060935.1 CM039044.1 97.55 True relocation, inconsistency = -109641 53889820 53900094 52670569 52680843 NC_060935.1 CM039044.1 97.51 True local misassembly 53901795 53903654 52680844 52682703 NC_060935.1 CM039044.1 97.83 True relocation, inconsistency = 62044 53965699 53972510 52682704 52689516 NC_060935.1 CM039044.1 97.55 True local misassembly 53979311 53992912 52689517 52703117 NC_060935.1 CM039044.1 97.82 True local misassembly 53995463 54021468 52703118 52729794 NC_060935.1 CM039044.1 95.31 True relocation, inconsistency = -38248 53983221 53992910 52729795 52739484 NC_060935.1 CM039044.1 97.51 True local misassembly 53996311 54000087 52739485 52743261 NC_060935.1 CM039044.1 97.74 True relocation, inconsistency = -29748 53970340 53977644 52743262 52750566 NC_060935.1 CM039044.1 97.45 True local misassembly 53971695 53977565 52750567 52756436 NC_060935.1 CM039044.1 97.64 True local misassembly 53975016 54000425 52756437 52781842 NC_060935.1 CM039044.1 97.82 True relocation, inconsistency = -18699 53981952 53992910 52782068 52793026 NC_060935.1 CM039044.1 97.47 True relocation, inconsistency = -95191 53897720 53905590 52793027 52800897 NC_060935.1 CM039044.1 97.7 True relocation, inconsistency = -2716338 51189253 51195118 52800898 52806764 NC_060935.1 CM039044.1 98.32 True relocation, inconsistency = 2766484 53961887 53981815 52807049 52826980 NC_060935.1 CM039044.1 97.33 True relocation, inconsistency = -84143 53897673 53923933 52826981 52853237 NC_060935.1 CM039044.1 97.86 True relocation, inconsistency = 49295 53973229 53993743 52853238 52873752 NC_060935.1 CM039044.1 97.81 True local misassembly 53989495 54020824 52873753 52905073 NC_060935.1 CM039044.1 97.85 True relocation, inconsistency = -141936 53878889 53887488 52905074 52913675 NC_060935.1 CM039044.1 97.66 True local misassembly 53890039 53902213 52913676 52925846 NC_060935.1 CM039044.1 97.49 True relocation, inconsistency = -11900 53890314 53899266 52925847 52934798 NC_060935.1 CM039044.1 97.5 True relocation, inconsistency = -101987 53797382 53807553 52934901 52945071 NC_060935.1 CM039044.1 97.6 True relocation, inconsistency = 143632 53951286 53961294 52945172 52955177 NC_060935.1 CM039044.1 97.65 True relocation, inconsistency = -928666 53032629 53037938 52955178 52960487 NC_060935.1 CM039044.1 97.76 True relocation, inconsistency = 630050 53667989 53676749 52960488 52969246 NC_060935.1 CM039044.1 97.09 True relocation, inconsistency = -1356531 52320386 52327629 52969414 52976652 NC_060935.1 CM039044.1 97.9 True relocation, inconsistency = 1567605 53895329 53902850 52976747 52984267 NC_060935.1 CM039044.1 97.89 True relocation, inconsistency = -16998 53885853 53901812 52984268 53000225 NC_060935.1 CM039044.1 97.89 True local misassembly 53896713 53898618 53000226 53002131 NC_060935.1 CM039044.1 97.95 True relocation, inconsistency = 505166 54403818 54412256 53002165 53010601 NC_060935.1 CM039044.1 98.04 True relocation, inconsistency = -585055 53827202 53835445 53010602 53018844 NC_060935.1 CM039044.1 97.99 True relocation, inconsistency = 51840 53887286 53899928 53018845 53031487 NC_060935.1 CM039044.1 97.84 True relocation, inconsistency = 471677 54371606 54373560 53031488 53033442 NC_060935.1 CM039044.1 98.14 True relocation, inconsistency = -390935 53982626 54008131 53033443 53058948 NC_060935.1 CM039044.1 97.84 True relocation, inconsistency = -18699 53989433 54002415 53058949 53071931 NC_060935.1 CM039044.1 98.0 True relocation, inconsistency = -23798 53978618 53987784 53071932 53081097 NC_060935.1 CM039044.1 97.93 True local misassembly 53993734 54005424 53081098 53092785 NC_060935.1 CM039044.1 98.03 True relocation, inconsistency = -22099 53983326 54002738 53092786 53112199 NC_060935.1 CM039044.1 98.08 True relocation, inconsistency = -62895 53939844 53940829 53112200 53113185 NC_060935.1 CM039044.1 98.01 True local misassembly 53934880 53950279 53113186 53128585 NC_060935.1 CM039044.1 98.07 True local misassembly 53945180 53947847 53128586 53131252 NC_060935.1 CM039044.1 98.05 True relocation, inconsistency = 41647 53989495 54003934 53131253 53145692 NC_060935.1 CM039044.1 98.06 True relocation, inconsistency = 398075 54402010 54404626 53145693 53148308 NC_060935.1 CM039044.1 98.46 True local misassembly 54400377 54412209 53148309 53160141 NC_060935.1 CM039044.1 98.39 True local misassembly 54405410 54408809 53160142 53163537 NC_060935.1 CM039044.1 98.59 True relocation, inconsistency = -2819706 51589202 51595682 53163636 53170112 NC_060935.1 CM039044.1 97.96 True relocation, inconsistency = 2631548 54227265 54232659 53170147 53175539 NC_060935.1 CM039044.1 97.78 True relocation, inconsistency = 171158 54403818 54413563 53175540 53185285 NC_060935.1 CM039044.1 98.13 True local misassembly 54409314 54413246 53185286 53189218 NC_060935.1 CM039044.1 98.19 True relocation, inconsistency = 14505 54427773 54444385 53189240 53205852 NC_060935.1 CM039044.1 98.38 True local misassembly 54445015 54446742 53206143 53207867 NC_060935.1 CM039044.1 95.72 True local misassembly 54449240 54449886 53210027 53210673 NC_060935.1 CM039044.1 97.06 True local misassembly 54448957 54449854 53212294 53213191 NC_060935.1 CM039044.1 95.77 True relocation, inconsistency = -14807 54444145 54445222 53222289 53223366 NC_060935.1 CM039044.1 95.92 True local misassembly 54448957 54450270 53226761 53228075 NC_060935.1 CM039044.1 95.51 True local misassembly 54445849 54446613 53229270 53230034 NC_060935.1 CM039044.1 96.47 True local misassembly 54447814 54449498 53230896 53232581 NC_060935.1 CM039044.1 96.38 True local misassembly 54455352 54473951 53232804 53251404 NC_060935.1 CM039044.1 97.45 True relocation, inconsistency = -42125 54432526 54434257 53252104 53253835 NC_060935.1 CM039044.1 97.92 True indel: indel (<= 5bp) 54434259 54436305 53253836 53255882 NC_060935.1 CM039044.1 97.8 True indel: indel (<= 5bp) 54436307 54437268 53255883 53256844 NC_060935.1 CM039044.1 97.61 True relocation, inconsistency = 13121 54450847 54465521 53257302 53271627 NC_060935.1 CM039044.1 96.97 True relocation, inconsistency = -14675 54450847 54692289 53271628 53512721 NC_060935.1 CM039044.1 99.49 True relocation, inconsistency = 21803 54714093 55186568 53512722 53985528 NC_060935.1 CM039044.1 99.68 True local misassembly 55185032 55535303 53985529 54335865 NC_060935.1 CM039044.1 99.67 True fake: not a misassembly (possible transposable element) 55602354 55605296 54338809 54335866 NC_060935.1 CM039044.1 99.9 True fake: not a misassembly (possible transposable element) 55535670 55536205 54338856 54339391 NC_060935.1 CM039044.1 100.0 True relocation, inconsistency = 78613 55614824 55616671 54341239 54339392 NC_060935.1 CM039044.1 99.84 True relocation, inconsistency = 11889 55628561 56314200 54341240 55027347 NC_060935.1 CM039044.1 99.77 True relocation, inconsistency = -7605 56314010 56975119 55034762 55696081 NC_060935.1 CM039044.1 99.64 True local misassembly 56975182 57026071 55696249 55747143 NC_060935.1 CM039044.1 99.37 True indel: indel (> 5bp) 57026140 57969801 55747192 56690630 NC_060935.1 CM039044.1 99.76 True indel: indel (> 5bp) 57969828 61173510 56690673 59894654 NC_060935.1 CM039044.1 99.7 True relocation, inconsistency = 37477 61210988 65509967 59894655 64194610 NC_060935.1 CM039044.1 99.86 True indel: indel (> 5bp) 65509996 66245314 64194653 64930867 NC_060935.1 CM039044.1 99.68 True fake: not a misassembly (possible transposable element) 66245315 66246108 64932066 64931269 NC_060935.1 CM039044.1 99.5 True fake: not a misassembly (possible transposable element) 66246109 68211893 64932083 66901767 NC_060935.1 CM039044.1 99.74 True local misassembly 68210688 68673115 66901768 67364110 NC_060935.1 CM039044.1 99.88 True local misassembly 68673448 73179262 67364881 71874580 NC_060935.1 CM039044.1 99.78 True local misassembly 73179583 75057011 71874771 73752116 NC_060935.1 CM039044.1 99.89 True indel: indel (> 5bp) 75057106 76649277 73752163 75344228 NC_060935.1 CM039044.1 99.83 True local misassembly 76649309 77125299 75344608 75820447 NC_060935.1 CM039044.1 99.84 True indel: indel (<= 5bp) 77125434 78611497 75820583 77306679 NC_060935.1 CM039044.1 99.85 True indel: stretch of mismatches 78611498 86110939 77306680 84805111 NC_060935.1 CM039044.1 99.83 True local misassembly 86115192 87920949 84805112 86613070 NC_060935.1 CM039044.1 99.68 True local misassembly 87922870 89075956 86615232 87768378 NC_060935.1 CM039044.1 99.85 True local misassembly 89076519 89828902 87768896 88521057 NC_060935.1 CM039044.1 99.79 True local misassembly 89828916 89854991 88521267 88547162 NC_060935.1 CM039044.1 98.81 True local misassembly 89855379 92017392 88547377 90708750 NC_060935.1 CM039044.1 99.76 True indel: stretch of mismatches 92017686 94150376 90709044 92843866 NC_060935.1 CM039044.1 99.37 True relocation, inconsistency = 56330 94206707 99643233 92843867 98286504 NC_060935.1 CM039044.1 99.7 True indel: indel (<= 5bp) 99643349 99825974 98286618 98469235 NC_060935.1 CM039044.1 99.76 True local misassembly 99826867 99827729 98470082 98470944 NC_060935.1 CM039044.1 99.65 True local misassembly 99828022 101705609 98471102 100349532 NC_060935.1 CM039044.1 99.79 True translocation 4700508 4708042 100357067 100349533 NC_060931.1 CM039044.1 98.81 True translocation 101704641 102733018 100357068 101385273 NC_060935.1 CM039044.1 99.74 True local misassembly 102733460 103029223 101386068 101680208 NC_060935.1 CM039044.1 99.21 True indel: indel (> 5bp) 103029374 104049558 101680367 102700426 NC_060935.1 CM039044.1 99.9 True local misassembly 104051622 104122702 102700711 102771817 NC_060935.1 CM039044.1 99.79 True local misassembly 104123328 107380142 102772331 106025327 NC_060935.1 CM039044.1 99.63 True indel: indel (<= 5bp) 107380260 110940846 106025446 109582653 NC_060935.1 CM039044.1 99.76 True indel: indel (> 5bp) 110940989 114643383 109582731 113284465 NC_060935.1 CM039044.1 99.84 True local misassembly 114643746 115612540 113284716 114253594 NC_060935.1 CM039044.1 99.83 True indel: indel (> 5bp) 115612710 116688051 114253742 115328469 NC_060935.1 CM039044.1 99.75 True local misassembly 116688522 117149929 115329043 115790420 NC_060935.1 CM039044.1 99.85 True indel: indel (> 5bp) 117150185 119670246 115790692 118311377 NC_060935.1 CM039044.1 99.78 True local misassembly 119670819 120105228 118313051 118748002 NC_060935.1 CM039044.1 99.74 True local misassembly 120105172 120290563 118748905 118934208 NC_060935.1 CM039044.1 99.68 True local misassembly 120290402 123147494 118934657 121795919 NC_060935.1 CM039044.1 99.64 True indel: indel (> 5bp) 123147653 126956301 121796059 125607668 NC_060935.1 CM039044.1 99.76 True indel: indel (> 5bp) 126956448 127625016 125607787 126276789 NC_060935.1 CM039044.1 99.73 True local misassembly 127625231 128965447 126277103 127618198 NC_060935.1 CM039044.1 99.68 True local misassembly 128965549 130127397 127618577 128780681 NC_060935.1 CM039044.1 99.76 True local misassembly 130127379 131826713 128781163 130482132 NC_060935.1 CM039044.1 99.74 True indel: indel (> 5bp) 131826957 133499836 130482364 132155444 NC_060935.1 CM039044.1 99.72 True local misassembly 133500094 133671133 132155835 132327632 NC_060935.1 CM039044.1 99.36 True indel: indel (<= 5bp) 133671275 134871849 132327777 133529058 NC_060935.1 CM039044.1 99.3 True local misassembly 134872863 135088304 133529544 133741001 NC_060935.1 CM039044.1 96.86 True local misassembly 135088524 135124997 133741111 133777101 NC_060935.1 CM039044.1 96.58 True CONTIG CM039044.1 133781676 misassembled 644 1361 6136 6838 NC_060943.1 CM039045.1 97.22 True translocation 2755 96371 11606 105564 NC_060936.1 CM039045.1 99.21 True local misassembly 96727 1115478 105698 1122351 NC_060936.1 CM039045.1 99.39 True local misassembly 1116762 1568866 1122601 1579611 NC_060936.1 CM039045.1 98.27 True local misassembly 1569134 3057220 1579612 3067318 NC_060936.1 CM039045.1 99.7 True indel: indel (> 5bp) 3057330 5936055 3067417 5945262 NC_060936.1 CM039045.1 99.75 True indel: indel (> 5bp) 5936138 6139874 5945356 6151793 NC_060936.1 CM039045.1 98.39 True local misassembly 6146793 6919688 6154758 6928680 NC_060936.1 CM039045.1 99.75 True local misassembly 6920217 7209562 6929099 7218055 NC_060936.1 CM039045.1 99.68 True local misassembly 7211069 7212679 7219205 7220815 NC_060936.1 CM039045.1 99.81 True indel: indel (<= 5bp) 7212681 7213259 7220816 7221394 NC_060936.1 CM039045.1 99.48 True local misassembly 7213260 7214494 7221583 7222817 NC_060936.1 CM039045.1 99.6 True indel: indel (<= 5bp) 7214664 7216546 7222985 7224867 NC_060936.1 CM039045.1 99.84 True indel: indel (> 5bp) 7216580 7811279 7224916 7819570 NC_060936.1 CM039045.1 99.68 True indel: indel (<= 5bp) 7811312 8400477 7819606 8409387 NC_060936.1 CM039045.1 99.69 True relocation, inconsistency = 7007 8407485 9385299 8409388 9387102 NC_060936.1 CM039045.1 99.81 True local misassembly 9386150 9839627 9387588 9842332 NC_060936.1 CM039045.1 99.5 True indel: indel (> 5bp) 9839674 10316685 9842365 10319065 NC_060936.1 CM039045.1 99.71 True indel: indel (<= 5bp) 10316732 10319126 10319109 10321499 NC_060936.1 CM039045.1 95.42 True relocation, inconsistency = -15429 10303698 10304429 10321500 10322231 NC_060936.1 CM039045.1 98.29 True local misassembly 10305000 10316685 10322810 10334492 NC_060936.1 CM039045.1 98.47 True indel: indel (<= 5bp) 10316732 10319126 10334536 10336926 NC_060936.1 CM039045.1 95.42 True relocation, inconsistency = -15429 10303698 10304429 10336927 10337658 NC_060936.1 CM039045.1 98.29 True local misassembly 10305000 10312393 10338237 10345615 NC_060936.1 CM039045.1 97.87 True indel: indel (> 5bp) 10312531 12885141 10345777 12920138 NC_060936.1 CM039045.1 99.65 True local misassembly 12885646 17972936 12920139 17998779 NC_060936.1 CM039045.1 99.6 True indel: indel (> 5bp) 17973246 19664469 17999147 19690391 NC_060936.1 CM039045.1 99.73 True local misassembly 19665831 21541087 19690492 21565154 NC_060936.1 CM039045.1 99.68 True indel: indel (> 5bp) 21541217 24490151 21565255 24516644 NC_060936.1 CM039045.1 99.74 True indel: indel (> 5bp) 24490181 24947284 24516668 24974935 NC_060936.1 CM039045.1 99.59 True indel: indel (> 5bp) 24947549 25463718 24975123 25490861 NC_060936.1 CM039045.1 99.69 True local misassembly 25462725 26657336 25490862 26685579 NC_060936.1 CM039045.1 99.83 True local misassembly 26657328 27507876 26685984 27536812 NC_060936.1 CM039045.1 99.8 True indel: indel (> 5bp) 27507939 30994382 27536867 31029428 NC_060936.1 CM039045.1 99.64 True local misassembly 30996983 31710798 31030084 31746211 NC_060936.1 CM039045.1 99.58 True local misassembly 31711901 33019537 31746212 33054492 NC_060936.1 CM039045.1 99.69 True translocation 50287598 50288339 33056362 33057103 NC_060947.1 CM039045.1 96.77 True translocation 33019532 34561287 33065300 34595484 NC_060936.1 CM039045.1 98.8 True local misassembly 34585934 34586940 34621021 34622027 NC_060936.1 CM039045.1 95.73 True local misassembly 34586959 34587570 34623743 34624354 NC_060936.1 CM039045.1 99.84 True indel: indel (<= 5bp) 34587572 34588584 34624355 34625367 NC_060936.1 CM039045.1 99.11 True indel: indel (<= 5bp) 34588589 34593493 34625368 34630272 NC_060936.1 CM039045.1 99.55 True local misassembly 34600177 34601193 34636276 34637292 NC_060936.1 CM039045.1 96.56 True local misassembly 34602332 34602842 34638773 34639283 NC_060936.1 CM039045.1 97.65 True indel: indel (<= 5bp) 34602948 34603514 34639390 34639956 NC_060936.1 CM039045.1 96.12 True local misassembly 34603515 34607506 34640636 34644627 NC_060936.1 CM039045.1 98.2 True local misassembly 34609998 34611395 34646437 34647834 NC_060936.1 CM039045.1 98.07 True local misassembly 34612382 34613759 34649160 34650539 NC_060936.1 CM039045.1 97.32 True local misassembly 34613713 34615039 34651172 34652497 NC_060936.1 CM039045.1 97.66 True local misassembly 34615026 34615940 34653163 34654078 NC_060936.1 CM039045.1 98.04 True local misassembly 34619906 34627374 34654648 34662125 NC_060936.1 CM039045.1 97.89 True relocation, inconsistency = 43806 34671383 34691952 34662328 34682891 NC_060936.1 CM039045.1 96.51 True local misassembly 34696030 34696779 34682892 34683641 NC_060936.1 CM039045.1 96.59 True indel: indel (<= 5bp) 34696781 34700022 34683642 34686883 NC_060936.1 CM039045.1 97.38 True local misassembly 34695947 34697304 34686884 34688241 NC_060936.1 CM039045.1 97.28 True indel: indel (<= 5bp) 34697306 34700022 34688242 34690958 NC_060936.1 CM039045.1 96.95 True local misassembly 34704778 34706949 34690959 34693130 NC_060936.1 CM039045.1 97.51 True local misassembly 34702873 34710719 34693131 34700976 NC_060936.1 CM039045.1 97.32 True relocation, inconsistency = 1051483 35762212 35763431 34700986 34702205 NC_060936.1 CM039045.1 98.11 True relocation, inconsistency = 1163965 36927397 36931818 34702206 34706633 NC_060936.1 CM039045.1 97.58 True relocation, inconsistency = -1785087 35146738 35151443 34706640 34711345 NC_060936.1 CM039045.1 98.83 True relocation, inconsistency = -448017 34703427 34706631 34711346 34714549 NC_060936.1 CM039045.1 97.25 True relocation, inconsistency = 1055558 35762212 35765710 34714572 34718069 NC_060936.1 CM039045.1 98.14 True relocation, inconsistency = -619431 35146515 35150135 34718305 34721923 NC_060936.1 CM039045.1 98.18 True relocation, inconsistency = -353585 34796551 34802628 34721924 34728001 NC_060936.1 CM039045.1 98.85 True local misassembly 34796551 34803342 34728039 34734829 NC_060936.1 CM039045.1 98.78 True relocation, inconsistency = -118891 34684483 34687681 34734861 34738058 NC_060936.1 CM039045.1 96.13 True relocation, inconsistency = 1358782 36046464 36047897 34738059 34739490 NC_060936.1 CM039045.1 98.33 True relocation, inconsistency = 435712 36484607 36486458 34740488 34742341 NC_060936.1 CM039045.1 97.71 True relocation, inconsistency = 428104 36914563 36921308 34742342 34749086 NC_060936.1 CM039045.1 97.21 True relocation, inconsistency = -2049684 34871625 34874002 34749087 34751463 NC_060936.1 CM039045.1 98.59 True relocation, inconsistency = -140304 34734383 34735965 34752148 34753729 NC_060936.1 CM039045.1 97.71 True relocation, inconsistency = 1135676 35871642 35877447 34753730 34759536 NC_060936.1 CM039045.1 97.95 True relocation, inconsistency = 600740 36484607 36486788 34765956 34768139 NC_060936.1 CM039045.1 97.67 True local misassembly 36484607 36486458 34770032 34771885 NC_060936.1 CM039045.1 97.67 True relocation, inconsistency = 428104 36914563 36919872 34771886 34777197 NC_060936.1 CM039045.1 97.31 True relocation, inconsistency = 143157 37070196 37076076 34784364 34790253 NC_060936.1 CM039045.1 97.79 True local misassembly 37073363 37074692 34790254 34791583 NC_060936.1 CM039045.1 97.79 True relocation, inconsistency = -2390197 34684496 34687811 34791584 34794901 NC_060936.1 CM039045.1 96.08 True relocation, inconsistency = 1654938 36345606 36349579 34797758 34801729 NC_060936.1 CM039045.1 97.89 True relocation, inconsistency = -1151910 35197670 35200445 34801730 34804505 NC_060936.1 CM039045.1 98.01 True relocation, inconsistency = 995681 36198622 36199140 34807001 34807519 NC_060936.1 CM039045.1 98.27 True relocation, inconsistency = -564060 35635168 35642761 34807607 34815201 NC_060936.1 CM039045.1 98.25 True relocation, inconsistency = -620447 35023970 35025963 34816857 34818849 NC_060936.1 CM039045.1 98.35 True relocation, inconsistency = 1172619 36198622 36199140 34818889 34819407 NC_060936.1 CM039045.1 98.27 True relocation, inconsistency = 591549 36790777 36791390 34819495 34820107 NC_060936.1 CM039045.1 98.45 True relocation, inconsistency = -455356 36336035 36341609 34820108 34825683 NC_060936.1 CM039045.1 98.49 True relocation, inconsistency = -256425 36085554 36087624 34826053 34828125 NC_060936.1 CM039045.1 98.79 True relocation, inconsistency = -191178 35898505 35903137 34830184 34834818 NC_060936.1 CM039045.1 98.6 True relocation, inconsistency = 728767 36632172 36638113 34835086 34841032 NC_060936.1 CM039045.1 98.37 True relocation, inconsistency = -1737716 34914086 34914746 34854721 34855381 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34856080 34856740 NC_060936.1 CM039045.1 99.85 True relocation, inconsistency = -16303 34901163 34907288 34858105 34864227 NC_060936.1 CM039045.1 98.84 True relocation, inconsistency = 748162 35655451 35659057 34864228 34867835 NC_060936.1 CM039045.1 98.72 True local misassembly 35655301 35659071 34868155 34871926 NC_060936.1 CM039045.1 98.81 True relocation, inconsistency = -745443 34914086 34914746 34872384 34873044 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34873743 34874403 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34874423 34875082 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34875102 34875762 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34875790 34876441 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34876461 34877121 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34877141 34877800 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34877820 34878480 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34878508 34879159 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34879179 34879839 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34879859 34880518 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34880538 34881198 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34881218 34881877 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34881897 34882557 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34882577 34883236 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34883256 34883916 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34883944 34884595 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34884615 34885275 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34885295 34885954 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34885974 34886634 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34886654 34887313 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 228579 35145808 35151830 34887762 34893785 NC_060936.1 CM039045.1 99.07 True relocation, inconsistency = -238087 34914086 34914746 34894128 34894788 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34895487 34896147 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34896167 34896826 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34896846 34897506 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34897534 34898185 NC_060936.1 CM039045.1 98.93 True local misassembly 34915441 34916101 34898205 34898865 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34898885 34899544 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34899564 34900224 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34900244 34900903 NC_060936.1 CM039045.1 99.39 True local misassembly 34916121 34916780 34901603 34902262 NC_060936.1 CM039045.1 99.24 True local misassembly 34914086 34914746 34903981 34904641 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34905340 34906000 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 34907379 34908038 NC_060936.1 CM039045.1 99.24 True local misassembly 34914086 34914746 34909757 34910417 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34911116 34911776 NC_060936.1 CM039045.1 99.7 True local misassembly 34916129 34916780 34913163 34913814 NC_060936.1 CM039045.1 99.54 True local misassembly 34913407 34914042 34916213 34916848 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34914086 34914746 34916892 34917552 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34918251 34918911 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34918939 34919590 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34919610 34920270 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34920290 34920949 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34920969 34921629 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34921649 34922308 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34922328 34922988 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34923008 34923667 NC_060936.1 CM039045.1 99.09 True local misassembly 34916129 34916780 34924375 34925026 NC_060936.1 CM039045.1 99.08 True local misassembly 34918159 34918858 34925046 34925745 NC_060936.1 CM039045.1 99.43 True relocation, inconsistency = -7131 34914086 34914746 34928104 34928764 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34929463 34930123 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916101 34930822 34931482 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34931510 34932161 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34932181 34932841 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34932861 34933520 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34933540 34934200 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34934220 34934879 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34934899 34935559 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34935587 34936238 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34936258 34936918 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34936938 34937597 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34937617 34938277 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34938297 34938956 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34938976 34939636 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34939656 34940315 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34940335 34940995 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34941023 34941674 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34941694 34942354 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34942374 34943033 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 34943053 34943713 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34943733 34944392 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34944412 34945072 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34945100 34945751 NC_060936.1 CM039045.1 99.23 True local misassembly 34915441 34916101 34945771 34946431 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 34946451 34947110 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 34947130 34947790 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34947818 34948469 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34948489 34949149 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34949169 34949828 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34949848 34950508 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34950536 34951187 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34951207 34951867 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34951887 34952546 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 716911 35634156 35641856 34953011 34960699 NC_060936.1 CM039045.1 98.6 True relocation, inconsistency = -727775 34914086 34914746 34960704 34961364 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34962063 34962723 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34962751 34963402 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34963422 34964082 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34964102 34964761 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34964781 34965441 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916129 34916780 34965469 34966120 NC_060936.1 CM039045.1 99.08 True local misassembly 34915441 34916101 34966140 34966800 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 34966820 34967479 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 716911 35634156 35641856 34967944 34975632 NC_060936.1 CM039045.1 98.61 True relocation, inconsistency = -733207 34914086 34914746 34981069 34981729 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 34982428 34983088 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 1684739 36601171 36606871 34983419 34989118 NC_060936.1 CM039045.1 98.46 True relocation, inconsistency = -982096 35624776 35627502 34989119 34991845 NC_060936.1 CM039045.1 98.67 True relocation, inconsistency = -184743 35442760 35448053 34991846 34997143 NC_060936.1 CM039045.1 98.68 True relocation, inconsistency = -534198 34914086 34914746 34997374 34998034 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 34998733 34999393 NC_060936.1 CM039045.1 99.39 True local misassembly 34914086 34914746 35000092 35000752 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 35001451 35002111 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916780 35003490 35004149 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = -8150 34914086 34914746 35009605 35010265 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35010964 35011624 NC_060936.1 CM039045.1 99.39 True local misassembly 34914086 34914746 35012323 35012983 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 35013682 35014342 NC_060936.1 CM039045.1 99.24 True indel: stretch of mismatches 34916121 34916780 35014362 35015021 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35015041 35015701 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35015721 35016380 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35016400 35017060 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35017080 35017739 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 1683380 36601173 36606871 35018752 35024452 NC_060936.1 CM039045.1 98.33 True relocation, inconsistency = -1663333 34947038 34948251 35027952 35029165 NC_060936.1 CM039045.1 98.85 True local misassembly 34948931 34951009 35029166 35031244 NC_060936.1 CM039045.1 99.13 True relocation, inconsistency = 174898 35133248 35135954 35038585 35041291 NC_060936.1 CM039045.1 98.96 True local misassembly 35133237 35138928 35041292 35046983 NC_060936.1 CM039045.1 98.86 True relocation, inconsistency = 303249 35442760 35448066 35047566 35052876 NC_060936.1 CM039045.1 98.64 True relocation, inconsistency = -327696 35133237 35134205 35065743 35066711 NC_060936.1 CM039045.1 98.93 True relocation, inconsistency = 898879 36033085 36041098 35066712 35074725 NC_060936.1 CM039045.1 98.4 True relocation, inconsistency = -598348 35442760 35447365 35074735 35079343 NC_060936.1 CM039045.1 98.61 True relocation, inconsistency = -462524 34984842 34993285 35079344 35087788 NC_060936.1 CM039045.1 98.99 True relocation, inconsistency = 447579 35442760 35448073 35089684 35095001 NC_060936.1 CM039045.1 98.61 True relocation, inconsistency = -547786 34914086 34914746 35108800 35109460 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35110159 35110819 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35114236 35114896 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35116275 35116934 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35121029 35121689 NC_060936.1 CM039045.1 99.7 True relocation, inconsistency = 2201578 37119332 37127042 35123342 35131053 NC_060936.1 CM039045.1 97.59 True relocation, inconsistency = -2211090 34916121 34916780 35131222 35131881 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 1109454 36028468 36031522 35134115 35137169 NC_060936.1 CM039045.1 98.25 True relocation, inconsistency = -875101 35156422 35162698 35137170 35143447 NC_060936.1 CM039045.1 98.84 True relocation, inconsistency = -252693 34914086 34914746 35147528 35148188 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35148887 35149547 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35152964 35153624 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35155003 35155662 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35159757 35160417 NC_060936.1 CM039045.1 99.7 True relocation, inconsistency = 2201578 37119332 37127042 35162070 35169781 NC_060936.1 CM039045.1 97.61 True relocation, inconsistency = -2211090 34916121 34916780 35169950 35170609 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 1109454 36028468 36031522 35172843 35175897 NC_060936.1 CM039045.1 98.25 True relocation, inconsistency = -875101 35156422 35162623 35175898 35182101 NC_060936.1 CM039045.1 98.86 True relocation, inconsistency = -145021 35017603 35022486 35182102 35186990 NC_060936.1 CM039045.1 98.47 True fake: not a misassembly (possible transposable element) 35146114 35149288 35186991 35190165 NC_060936.1 CM039045.1 98.97 True fake: not a misassembly (possible transposable element) 35022945 35026016 35190166 35193237 NC_060936.1 CM039045.1 98.98 True relocation, inconsistency = -9508 35016509 35022634 35193238 35199368 NC_060936.1 CM039045.1 98.58 True relocation, inconsistency = -114461 34914086 34914746 35205281 35205941 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 35206640 35207276 NC_060936.1 CM039045.1 99.69 True local misassembly 34915441 34916101 35207999 35208659 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35208679 35209338 NC_060936.1 CM039045.1 98.79 True local misassembly 34916121 34916780 35210038 35210697 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 94088 35014798 35016075 35214627 35215905 NC_060936.1 CM039045.1 98.36 True local misassembly 35014718 35020584 35215906 35221775 NC_060936.1 CM039045.1 98.57 True relocation, inconsistency = -8149 35012436 35022424 35221776 35231773 NC_060936.1 CM039045.1 98.72 True local misassembly 35025143 35026329 35231774 35232960 NC_060936.1 CM039045.1 98.87 True relocation, inconsistency = 986843 36013173 36018836 35232961 35238630 NC_060936.1 CM039045.1 98.17 True relocation, inconsistency = -1319383 34714855 34716264 35254032 35255442 NC_060936.1 CM039045.1 97.31 True relocation, inconsistency = 104969 34825429 34826088 35259638 35260297 NC_060936.1 CM039045.1 98.64 True local misassembly 34826769 34829921 35260298 35263450 NC_060936.1 CM039045.1 98.54 True relocation, inconsistency = 85256 34915441 34916101 35263714 35264374 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35265753 35266412 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 73037 34991144 34996462 35267739 35273059 NC_060936.1 CM039045.1 98.83 True local misassembly 34995784 35001995 35273060 35279277 NC_060936.1 CM039045.1 98.34 True relocation, inconsistency = 41429 35043425 35051988 35279278 35287848 NC_060936.1 CM039045.1 98.44 True relocation, inconsistency = -39387 35012602 35020561 35287849 35295813 NC_060936.1 CM039045.1 98.78 True relocation, inconsistency = 134154 35154716 35158059 35295814 35299159 NC_060936.1 CM039045.1 98.72 True local misassembly 35154664 35156775 35299160 35301273 NC_060936.1 CM039045.1 98.65 True relocation, inconsistency = -115816 35040960 35050948 35301274 35311271 NC_060936.1 CM039045.1 98.69 True local misassembly 35048235 35050563 35311272 35313941 NC_060936.1 CM039045.1 95.38 True relocation, inconsistency = 1298964 36349528 36350136 35313942 35314550 NC_060936.1 CM039045.1 97.91 True indel: indel (<= 5bp) 36350607 36351290 35315025 35315708 NC_060936.1 CM039045.1 98.68 True relocation, inconsistency = -1448064 34903394 34909088 35315876 35321571 NC_060936.1 CM039045.1 98.89 True fake: not a misassembly (possible transposable element) 35147177 35151052 35321572 35325448 NC_060936.1 CM039045.1 98.89 True fake: not a misassembly (possible transposable element) 34915441 34916101 35326569 35327229 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35328608 35329267 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 123293 35040960 35050948 35330154 35340151 NC_060936.1 CM039045.1 98.8 True relocation, inconsistency = -38368 35013107 35022103 35340678 35350020 NC_060936.1 CM039045.1 95.17 True relocation, inconsistency = 21733 35043837 35049951 35350021 35356139 NC_060936.1 CM039045.1 98.64 True local misassembly 35044720 35046828 35356682 35358790 NC_060936.1 CM039045.1 98.62 True indel: indel (<= 5bp) 35046829 35048475 35358792 35360438 NC_060936.1 CM039045.1 99.15 True relocation, inconsistency = -7130 35041631 35049951 35360724 35369050 NC_060936.1 CM039045.1 98.64 True relocation, inconsistency = -37012 35013107 35022424 35369218 35378544 NC_060936.1 CM039045.1 98.69 True relocation, inconsistency = 1324093 36347077 36349078 35379104 35381105 NC_060936.1 CM039045.1 98.45 True relocation, inconsistency = -1307792 35041352 35048238 35381171 35388062 NC_060936.1 CM039045.1 98.72 True relocation, inconsistency = -354276 34694132 34695967 35388232 35390067 NC_060936.1 CM039045.1 96.46 True relocation, inconsistency = 218757 34915441 34916101 35390784 35391444 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35392823 35393482 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 113782 35040960 35050949 35403880 35413877 NC_060936.1 CM039045.1 98.77 True relocation, inconsistency = -38368 35013107 35021427 35414403 35422729 NC_060936.1 CM039045.1 98.67 True relocation, inconsistency = 96109 35119063 35128389 35424256 35433584 NC_060936.1 CM039045.1 98.9 True relocation, inconsistency = 1060208 36188598 36190168 35433585 35435150 NC_060936.1 CM039045.1 98.46 True relocation, inconsistency = -1512978 34677191 34677800 35435151 35435759 NC_060936.1 CM039045.1 96.51 True local misassembly 34672365 34678729 35435760 35442124 NC_060936.1 CM039045.1 96.39 True relocation, inconsistency = 957747 35638729 35641856 35444377 35447503 NC_060936.1 CM039045.1 98.85 True relocation, inconsistency = -899327 34743839 34746464 35448813 35451439 NC_060936.1 CM039045.1 97.41 True relocation, inconsistency = 205184 34952427 34959341 35452218 35459134 NC_060936.1 CM039045.1 98.89 True relocation, inconsistency = 48905 35012434 35022424 35463322 35473317 NC_060936.1 CM039045.1 98.75 True relocation, inconsistency = 18680 35041631 35049951 35473844 35482170 NC_060936.1 CM039045.1 98.65 True relocation, inconsistency = 63510 35114988 35124314 35483697 35493025 NC_060936.1 CM039045.1 98.9 True relocation, inconsistency = 1064283 36188598 36190148 35493026 35494571 NC_060936.1 CM039045.1 98.44 True relocation, inconsistency = -342980 35847169 35850267 35494572 35497675 NC_060936.1 CM039045.1 98.26 True relocation, inconsistency = -1193085 34657460 34661533 35497953 35502026 NC_060936.1 CM039045.1 96.27 True relocation, inconsistency = 975404 35638729 35639669 35503818 35504758 NC_060936.1 CM039045.1 98.91 True relocation, inconsistency = -751891 34887779 34894480 35504759 35511464 NC_060936.1 CM039045.1 98.79 True relocation, inconsistency = -229628 34669270 34671425 35515882 35518042 NC_060936.1 CM039045.1 96.58 True relocation, inconsistency = 72008 34747208 34749861 35521817 35524470 NC_060936.1 CM039045.1 97.1 True relocation, inconsistency = -95101 34654761 34656486 35524471 35526196 NC_060936.1 CM039045.1 96.25 True relocation, inconsistency = 15278 34673761 34678729 35528193 35533161 NC_060936.1 CM039045.1 96.32 True relocation, inconsistency = 452772 35132395 35135507 35534055 35537167 NC_060936.1 CM039045.1 98.81 True relocation, inconsistency = 1422548 36559285 36562902 35538397 35542016 NC_060936.1 CM039045.1 98.2 True relocation, inconsistency = -776623 35794947 35799866 35550684 35555608 NC_060936.1 CM039045.1 98.78 True relocation, inconsistency = 1394657 37195078 37195986 35556163 35557071 NC_060936.1 CM039045.1 97.25 True relocation, inconsistency = -2418281 34778099 34780777 35557465 35560143 NC_060936.1 CM039045.1 97.31 True relocation, inconsistency = -126017 34654761 34656391 35560144 35561774 NC_060936.1 CM039045.1 96.25 True relocation, inconsistency = 1104130 35760522 35763977 35561775 35565232 NC_060936.1 CM039045.1 98.63 True relocation, inconsistency = -723018 35040960 35050039 35565233 35574317 NC_060936.1 CM039045.1 98.97 True local misassembly 35045965 35047920 35574318 35576273 NC_060936.1 CM039045.1 98.98 True relocation, inconsistency = -35314 35012607 35019687 35576274 35583528 NC_060936.1 CM039045.1 96.66 True relocation, inconsistency = -31239 34988449 34995777 35583529 35591030 NC_060936.1 CM039045.1 96.52 True relocation, inconsistency = 137537 35133315 35138240 35591031 35595955 NC_060936.1 CM039045.1 98.82 True relocation, inconsistency = 519927 35658168 35659071 35595956 35596860 NC_060936.1 CM039045.1 98.81 True relocation, inconsistency = 1468360 37130213 37130985 35599642 35600414 NC_060936.1 CM039045.1 97.8 True indel: indel (<= 5bp) 37130986 37132134 35600416 35601564 NC_060936.1 CM039045.1 97.65 True local misassembly 37130213 37130985 35606097 35606869 NC_060936.1 CM039045.1 97.8 True indel: indel (<= 5bp) 37130986 37132134 35606871 35608019 NC_060936.1 CM039045.1 97.65 True relocation, inconsistency = -1983528 35154991 35156783 35614404 35616198 NC_060936.1 CM039045.1 98.98 True local misassembly 35154068 35162698 35616199 35624830 NC_060936.1 CM039045.1 99.04 True relocation, inconsistency = -271375 34891324 34896755 35624831 35630266 NC_060936.1 CM039045.1 98.72 True relocation, inconsistency = 1039530 35938503 35942961 35632484 35636945 NC_060936.1 CM039045.1 98.36 True relocation, inconsistency = -8150 35938503 35942924 35640637 35645061 NC_060936.1 CM039045.1 98.34 True relocation, inconsistency = 616353 36559278 36565328 35645062 35651114 NC_060936.1 CM039045.1 98.35 True relocation, inconsistency = -1650781 34916121 34916780 35652688 35653347 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35653367 35654027 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35654047 35654706 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 123293 35040960 35050948 35655593 35665590 NC_060936.1 CM039045.1 98.81 True relocation, inconsistency = 1801502 36852451 36858544 35665591 35671691 NC_060936.1 CM039045.1 97.87 True relocation, inconsistency = -1811004 35047541 35050948 35671692 35675103 NC_060936.1 CM039045.1 98.65 True relocation, inconsistency = 1655179 36706501 36708697 35675477 35677673 NC_060936.1 CM039045.1 98.87 True relocation, inconsistency = -149420 36559278 36565292 35677674 35683691 NC_060936.1 CM039045.1 98.33 True relocation, inconsistency = -1723807 34841486 34844641 35683692 35686846 NC_060936.1 CM039045.1 98.87 True relocation, inconsistency = 167794 35012436 35017867 35686847 35692282 NC_060936.1 CM039045.1 98.83 True relocation, inconsistency = 136192 35154060 35162698 35692283 35700924 NC_060936.1 CM039045.1 98.89 True local misassembly 35159981 35160850 35700925 35701794 NC_060936.1 CM039045.1 98.84 True relocation, inconsistency = -271374 34889477 34898552 35701795 35710875 NC_060936.1 CM039045.1 98.71 True relocation, inconsistency = 113451 35012436 35022634 35711308 35721515 NC_060936.1 CM039045.1 98.73 True relocation, inconsistency = 1951083 36980147 36982901 35727945 35730707 NC_060936.1 CM039045.1 97.83 True relocation, inconsistency = -585916 36397283 36399329 35731005 35733051 NC_060936.1 CM039045.1 98.52 True relocation, inconsistency = -1401835 34997495 35003412 35733052 35738972 NC_060936.1 CM039045.1 98.63 True relocation, inconsistency = -109377 34894036 34897660 35738973 35742598 NC_060936.1 CM039045.1 98.45 True relocation, inconsistency = 2238943 37138032 37139003 35744027 35744998 NC_060936.1 CM039045.1 96.4 True relocation, inconsistency = -1986247 35152840 35159059 35745082 35751305 NC_060936.1 CM039045.1 99.04 True relocation, inconsistency = 619770 35779189 35784258 35751665 35756735 NC_060936.1 CM039045.1 98.36 True relocation, inconsistency = -742378 35041881 35049131 35756736 35763990 NC_060936.1 CM039045.1 98.55 True relocation, inconsistency = 2143146 37193718 37194634 35765431 35766347 NC_060936.1 CM039045.1 97.06 True indel: indel (<= 5bp) 37195078 37195986 35766790 35767698 NC_060936.1 CM039045.1 97.69 True indel: indel (<= 5bp) 37196438 37197407 35768149 35769118 NC_060936.1 CM039045.1 97.11 True translocation 19061597 19066467 35774879 35770009 NC_060928.1 CM039045.1 99.92 True indel: stretch of mismatches 19060452 19061596 35776023 35774880 NC_060928.1 CM039045.1 99.81 True translocation 36004282 36005066 35776053 35776837 NC_060936.1 CM039045.1 98.09 True relocation, inconsistency = 1192300 37197794 37198738 35777265 35778209 NC_060936.1 CM039045.1 97.46 True relocation, inconsistency = -1451034 35747998 35752075 35778503 35782582 NC_060936.1 CM039045.1 98.37 True relocation, inconsistency = -57057 35695019 35704291 35782583 35791858 NC_060936.1 CM039045.1 98.24 True relocation, inconsistency = 43472 35747998 35750720 35792093 35794814 NC_060936.1 CM039045.1 98.43 True relocation, inconsistency = -955694 34795027 34805142 35794815 35804930 NC_060936.1 CM039045.1 98.87 True relocation, inconsistency = 2174587 36980147 36982508 35805348 35807713 NC_060936.1 CM039045.1 98.27 True local misassembly 36980147 36982508 35807727 35810092 NC_060936.1 CM039045.1 98.35 True relocation, inconsistency = -1288178 35695021 35700828 35810783 35816593 NC_060936.1 CM039045.1 98.43 True relocation, inconsistency = 1054061 36755878 36757276 35817582 35818983 NC_060936.1 CM039045.1 98.36 True relocation, inconsistency = 376269 37133700 37134278 35819138 35819716 NC_060936.1 CM039045.1 97.85 True relocation, inconsistency = -1475153 35659126 35661805 35819717 35822397 NC_060936.1 CM039045.1 98.02 True relocation, inconsistency = 133472 35795594 35797977 35822714 35825098 NC_060936.1 CM039045.1 98.66 True relocation, inconsistency = 1364781 37165885 37166856 35828225 35829196 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37167245 37168216 35829584 35830555 NC_060936.1 CM039045.1 96.3 True relocation, inconsistency = -2253212 34915441 34916101 35830992 35831652 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35831672 35832331 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35832351 35833011 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35833031 35833690 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35833710 35834370 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35834390 35835049 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35835069 35835729 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35835749 35836408 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916077 35836428 35837064 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 35837108 35837767 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35837787 35838447 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35838467 35839126 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 35839146 35839782 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 35839826 35840485 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35840505 35841165 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35841185 35841844 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35841864 35842524 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35842544 35843203 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35843223 35843883 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35843903 35844562 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916077 35844582 35845218 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 35845262 35845921 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35845941 35846601 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35846621 35847280 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35847300 35847960 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35847980 35848639 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35848659 35849319 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35849339 35849998 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916077 35850018 35850654 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916750 35850698 35851327 NC_060936.1 CM039045.1 99.09 True fake: not a misassembly (possible transposable element) 37139392 37140215 35851328 35852151 NC_060936.1 CM039045.1 97.09 True fake: not a misassembly (possible transposable element) 34916216 34916780 35852152 35852716 NC_060936.1 CM039045.1 99.39 True local misassembly 34914086 34914746 35852736 35853396 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35854095 35854755 NC_060936.1 CM039045.1 99.7 True local misassembly 34916121 34916780 35856134 35856793 NC_060936.1 CM039045.1 99.55 True local misassembly 34918159 34918838 35856813 35857492 NC_060936.1 CM039045.1 99.56 True relocation, inconsistency = 774309 35695014 35695738 35859359 35860083 NC_060936.1 CM039045.1 98.76 True indel: indel (<= 5bp) 35695739 35698876 35860085 35863222 NC_060936.1 CM039045.1 98.18 True indel: indel (<= 5bp) 35698877 35700207 35863225 35864555 NC_060936.1 CM039045.1 98.57 True relocation, inconsistency = 1495868 37196438 37197407 35864918 35865887 NC_060936.1 CM039045.1 97.11 True relocation, inconsistency = -2283760 34914086 34914746 35866326 35866986 NC_060936.1 CM039045.1 99.09 True local misassembly 34916121 34916780 35867006 35867665 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35867685 35868345 NC_060936.1 CM039045.1 99.55 True local misassembly 34916121 34916780 35869724 35870383 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 2218563 37138032 37139003 35873072 35874043 NC_060936.1 CM039045.1 95.58 True indel: indel (<= 5bp) 37139392 37140215 35874431 35875254 NC_060936.1 CM039045.1 97.21 True local misassembly 37140750 37141739 35875790 35876779 NC_060936.1 CM039045.1 95.86 True relocation, inconsistency = -1420821 35721561 35724965 35877422 35880828 NC_060936.1 CM039045.1 98.74 True relocation, inconsistency = -811326 34914086 34914746 35881275 35881935 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35882634 35883294 NC_060936.1 CM039045.1 99.24 True indel: stretch of mismatches 34916121 34916780 35883314 35883973 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35883993 35884653 NC_060936.1 CM039045.1 99.09 True indel: stretch of mismatches 34916121 34916780 35884673 35885332 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35885352 35886012 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35886032 35886691 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916101 35886711 35887371 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35887391 35888050 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916118 35888070 35888747 NC_060936.1 CM039045.1 99.71 True indel: stretch of mismatches 34916121 34916780 35888750 35889409 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 35889429 35890089 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35890109 35890768 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2017395 36934492 36936982 35891085 35893579 NC_060936.1 CM039045.1 97.68 True relocation, inconsistency = -9494 36928230 36933174 35894321 35899277 NC_060936.1 CM039045.1 97.5 True relocation, inconsistency = 233435 37167245 37168216 35899913 35900884 NC_060936.1 CM039045.1 96.5 True indel: indel (<= 5bp) 37168605 37169283 35901272 35901950 NC_060936.1 CM039045.1 96.48 True fake: not a misassembly (possible transposable element) 36825255 36827143 35901951 35903838 NC_060936.1 CM039045.1 98.31 True fake: not a misassembly (possible transposable element) 37171678 37172224 35904345 35904891 NC_060936.1 CM039045.1 95.25 True relocation, inconsistency = -1494187 35678833 35680458 35905687 35907312 NC_060936.1 CM039045.1 98.89 True relocation, inconsistency = 14265 35695019 35698192 35907608 35910782 NC_060936.1 CM039045.1 98.24 True local misassembly 35695815 35699611 35910783 35914581 NC_060936.1 CM039045.1 98.26 True relocation, inconsistency = -787552 34914086 34914746 35916608 35917268 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35917967 35918627 NC_060936.1 CM039045.1 99.7 True relocation, inconsistency = 1087045 36004135 36005493 35919616 35920974 NC_060936.1 CM039045.1 98.38 True relocation, inconsistency = -368440 35637054 35641590 35920975 35925510 NC_060936.1 CM039045.1 98.52 True relocation, inconsistency = -726420 34916121 34916750 35926461 35927090 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 2249134 37165885 37166856 35927091 35928062 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 35928450 35929421 NC_060936.1 CM039045.1 96.3 True relocation, inconsistency = -2254567 34914086 34914746 35929858 35930518 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35931217 35931877 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35931897 35932556 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 35932576 35933212 NC_060936.1 CM039045.1 99.69 True indel: stretch of mismatches 34916121 34916780 35933256 35933915 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35933935 35934595 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35934615 35935274 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35935294 35935954 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35935974 35936633 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35936653 35937313 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 35937333 35937992 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916077 35938012 35938648 NC_060936.1 CM039045.1 99.22 True indel: stretch of mismatches 34916121 34916780 35938692 35939351 NC_060936.1 CM039045.1 98.79 True local misassembly 34915441 34916056 35939371 35939986 NC_060936.1 CM039045.1 99.19 True indel: stretch of mismatches 34916121 34916632 35940051 35940562 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 778386 35695019 35701573 35940563 35947119 NC_060936.1 CM039045.1 98.28 True relocation, inconsistency = 1432365 37133939 37135015 35947120 35948198 NC_060936.1 CM039045.1 97.19 True relocation, inconsistency = -2218900 34916121 34916780 35948204 35948863 NC_060936.1 CM039045.1 98.64 True local misassembly 34914086 34914722 35948883 35949519 NC_060936.1 CM039045.1 99.37 True local misassembly 34915441 34916101 35950242 35950902 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916101 35951601 35952261 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 35952281 35952940 NC_060936.1 CM039045.1 99.24 True local misassembly 34914086 34914746 35952960 35953620 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 35954318 35954978 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35954998 35955657 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 35955677 35956337 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 35956357 35957016 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35957036 35957696 NC_060936.1 CM039045.1 99.24 True indel: stretch of mismatches 34916121 34916780 35957716 35958375 NC_060936.1 CM039045.1 98.48 True local misassembly 34916121 34916780 35959075 35959734 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 1546185 36463209 36465601 35959978 35962370 NC_060936.1 CM039045.1 98.58 True relocation, inconsistency = -828939 35637054 35641562 35962762 35967269 NC_060936.1 CM039045.1 98.56 True relocation, inconsistency = -726420 34915441 34916101 35967568 35968228 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35968248 35968907 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35968927 35969587 NC_060936.1 CM039045.1 99.24 True indel: stretch of mismatches 34916121 34916780 35969607 35970266 NC_060936.1 CM039045.1 98.48 True local misassembly 34914086 34914722 35970286 35970922 NC_060936.1 CM039045.1 99.53 True local misassembly 34916121 34916780 35970966 35971625 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 35971645 35972305 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 1087045 36004135 36005493 35973294 35974652 NC_060936.1 CM039045.1 98.38 True relocation, inconsistency = -368440 35637054 35641562 35974653 35979160 NC_060936.1 CM039045.1 98.62 True relocation, inconsistency = -726420 34915441 34916101 35979459 35980119 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35980139 35980798 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 35980818 35981454 NC_060936.1 CM039045.1 99.69 True indel: stretch of mismatches 34916121 34916780 35981498 35982157 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35982177 35982837 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35982857 35983516 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35983536 35984196 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35984216 35984875 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 35984895 35985555 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 35985575 35986234 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916077 35986254 35986890 NC_060936.1 CM039045.1 99.22 True indel: stretch of mismatches 34916121 34916632 35986934 35987445 NC_060936.1 CM039045.1 98.94 True relocation, inconsistency = 778386 35695019 35701573 35987446 35994003 NC_060936.1 CM039045.1 98.31 True relocation, inconsistency = -786537 34915441 34916101 35994408 35995068 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 35995088 35995747 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 35995767 35996427 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 35996447 35997106 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916077 35997126 35997762 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34916121 34916780 35997806 35998465 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916056 35998485 35999100 NC_060936.1 CM039045.1 99.35 True indel: stretch of mismatches 34916121 34916780 35999165 35999824 NC_060936.1 CM039045.1 99.09 True local misassembly 34916121 34916780 36000524 36001183 NC_060936.1 CM039045.1 98.64 True local misassembly 34917461 34918288 36001184 36002011 NC_060936.1 CM039045.1 98.75 True relocation, inconsistency = 1808684 36726973 36734382 36002012 36009431 NC_060936.1 CM039045.1 98.42 True relocation, inconsistency = -1818187 34916196 34916750 36009432 36009986 NC_060936.1 CM039045.1 98.79 True relocation, inconsistency = 2221281 37138032 37139003 36009987 36010958 NC_060936.1 CM039045.1 96.4 True local misassembly 37140750 37141739 36011346 36012335 NC_060936.1 CM039045.1 96.06 True local misassembly 37140750 37141739 36012705 36013694 NC_060936.1 CM039045.1 96.06 True local misassembly 37143469 37144385 36014064 36014980 NC_060936.1 CM039045.1 97.6 True local misassembly 37143469 37144385 36015423 36016339 NC_060936.1 CM039045.1 97.71 True relocation, inconsistency = -1449691 35695019 35700034 36016664 36021682 NC_060936.1 CM039045.1 98.67 True local misassembly 35695019 35700034 36022100 36027118 NC_060936.1 CM039045.1 98.7 True relocation, inconsistency = -785178 34915441 34916101 36027703 36028363 NC_060936.1 CM039045.1 99.39 True local misassembly 34913407 34914042 36028383 36029018 NC_060936.1 CM039045.1 99.37 True local misassembly 34915441 34916101 36029062 36029722 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 36029742 36030401 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916077 36030421 36031057 NC_060936.1 CM039045.1 99.22 True indel: stretch of mismatches 34916121 34916632 36031101 36031612 NC_060936.1 CM039045.1 98.94 True relocation, inconsistency = 778386 35695019 35701573 36031613 36038170 NC_060936.1 CM039045.1 98.31 True relocation, inconsistency = 1436103 37138032 37139003 36038526 36039497 NC_060936.1 CM039045.1 96.3 True relocation, inconsistency = -2223999 34915441 34916101 36039934 36040594 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36040614 36041273 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916077 36041293 36041929 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34916121 34916780 36041973 36042632 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916056 36042652 36043267 NC_060936.1 CM039045.1 99.35 True indel: stretch of mismatches 34916121 34916780 36043332 36043991 NC_060936.1 CM039045.1 99.09 True local misassembly 34916121 34916780 36044691 36045350 NC_060936.1 CM039045.1 98.64 True local misassembly 34917461 34918288 36045351 36046178 NC_060936.1 CM039045.1 98.71 True relocation, inconsistency = 1808684 36726973 36734382 36046179 36053598 NC_060936.1 CM039045.1 98.42 True relocation, inconsistency = -1818187 34916196 34916750 36053599 36054153 NC_060936.1 CM039045.1 98.79 True relocation, inconsistency = 2251854 37168605 37169428 36054154 36054977 NC_060936.1 CM039045.1 97.21 True local misassembly 37169963 37170952 36055513 36056502 NC_060936.1 CM039045.1 96.06 True fake: not a misassembly (possible transposable element) 34913407 34914036 36057601 36058230 NC_060936.1 CM039045.1 99.21 True fake: not a misassembly (possible transposable element) 37172682 37173598 36058231 36059147 NC_060936.1 CM039045.1 97.71 True relocation, inconsistency = -1478904 35695019 35700034 36059472 36064490 NC_060936.1 CM039045.1 98.67 True local misassembly 35695019 35700034 36064908 36069926 NC_060936.1 CM039045.1 98.68 True relocation, inconsistency = 1482298 37182868 37183762 36070462 36071356 NC_060936.1 CM039045.1 96.87 True indel: indel (<= 5bp) 37184221 37185124 36071817 36072720 NC_060936.1 CM039045.1 97.68 True relocation, inconsistency = -2270188 34916121 34916632 36073905 36074416 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 778386 35695019 35700034 36074417 36079435 NC_060936.1 CM039045.1 98.41 True local misassembly 35698678 35700034 36079436 36080794 NC_060936.1 CM039045.1 98.31 True relocation, inconsistency = -786533 34913502 34914042 36080795 36081335 NC_060936.1 CM039045.1 99.37 True local misassembly 34915441 34916101 36081379 36082039 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36082059 36082718 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 36082738 36083398 NC_060936.1 CM039045.1 98.79 True indel: stretch of mismatches 34916121 34916780 36083418 36084077 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36084097 36084757 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916750 36084777 36085406 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2250494 37167245 37168216 36085407 36086378 NC_060936.1 CM039045.1 96.3 True indel: indel (<= 5bp) 37168605 37169428 36086766 36087589 NC_060936.1 CM039045.1 96.84 True local misassembly 37169963 37170952 36088125 36089114 NC_060936.1 CM039045.1 96.36 True local misassembly 37165885 37166856 36089484 36090455 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37167245 37168216 36090843 36091814 NC_060936.1 CM039045.1 95.99 True indel: indel (<= 5bp) 37168605 37169428 36092202 36093025 NC_060936.1 CM039045.1 97.21 True local misassembly 37169963 37170952 36093561 36094550 NC_060936.1 CM039045.1 96.26 True relocation, inconsistency = -34650 37136672 37137643 36094920 36095891 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37138032 37139003 36096279 36097250 NC_060936.1 CM039045.1 95.88 True local misassembly 37140750 37141739 36097638 36098627 NC_060936.1 CM039045.1 96.06 True local misassembly 37140750 37141739 36098997 36099986 NC_060936.1 CM039045.1 96.67 True local misassembly 37143469 37144385 36100356 36101272 NC_060936.1 CM039045.1 97.49 True relocation, inconsistency = -2229436 34915441 34916077 36101764 36102400 NC_060936.1 CM039045.1 99.69 True local misassembly 34913407 34914042 36102444 36103079 NC_060936.1 CM039045.1 99.53 True indel: stretch of mismatches 34914086 34914722 36103123 36103759 NC_060936.1 CM039045.1 99.53 True local misassembly 34915441 34916101 36104482 36105142 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36105162 36105821 NC_060936.1 CM039045.1 99.24 True local misassembly 34914086 34914722 36105841 36106477 NC_060936.1 CM039045.1 99.37 True local misassembly 34915441 34916101 36107200 36107860 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36107880 36108539 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36108559 36109219 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36109239 36109898 NC_060936.1 CM039045.1 98.94 True local misassembly 34915441 34916101 36109918 36110578 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36110598 36111257 NC_060936.1 CM039045.1 99.55 True local misassembly 34914086 34914746 36111277 36111937 NC_060936.1 CM039045.1 99.39 True local misassembly 34916121 34916780 36111957 36112616 NC_060936.1 CM039045.1 99.55 True local misassembly 34914086 34914746 36112636 36113296 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916077 36113995 36114631 NC_060936.1 CM039045.1 99.69 True local misassembly 34916121 34916780 36116034 36116693 NC_060936.1 CM039045.1 99.39 True local misassembly 34914086 34914751 36116713 36117378 NC_060936.1 CM039045.1 99.25 True local misassembly 34915441 34916056 36118072 36118687 NC_060936.1 CM039045.1 99.84 True relocation, inconsistency = 758686 35678039 35680463 36121984 36124409 NC_060936.1 CM039045.1 98.56 True relocation, inconsistency = 1414722 37096036 37097353 36125260 36126578 NC_060936.1 CM039045.1 97.35 True relocation, inconsistency = -2310983 34786576 34787641 36126784 36127849 NC_060936.1 CM039045.1 97.28 True relocation, inconsistency = 2377880 37165885 37166551 36128213 36128879 NC_060936.1 CM039045.1 98.35 True local misassembly 37167245 37168216 36129573 36130544 NC_060936.1 CM039045.1 96.5 True relocation, inconsistency = -31932 37136672 37137643 36130932 36131903 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 36132291 36133262 NC_060936.1 CM039045.1 96.4 True local misassembly 37140750 37141739 36133650 36134639 NC_060936.1 CM039045.1 96.67 True local misassembly 37140750 37141695 36135009 36135954 NC_060936.1 CM039045.1 96.83 True local misassembly 37136672 37137643 36136368 36137339 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 36137727 36138698 NC_060936.1 CM039045.1 95.99 True relocation, inconsistency = -68183 37071105 37078244 36138983 36146134 NC_060936.1 CM039045.1 98.18 True local misassembly 37072821 37078244 36146135 36151570 NC_060936.1 CM039045.1 98.25 True relocation, inconsistency = -1938097 35140148 35143562 36151571 36154985 NC_060936.1 CM039045.1 98.55 True relocation, inconsistency = 2043978 37190327 37191321 36157772 36158766 NC_060936.1 CM039045.1 96.98 True indel: indel (<= 5bp) 37191323 37191909 36158767 36159353 NC_060936.1 CM039045.1 97.1 True relocation, inconsistency = -1509116 35684218 35685557 36160778 36162118 NC_060936.1 CM039045.1 98.88 True relocation, inconsistency = 1449347 37136672 37137643 36163886 36164857 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37138032 37138563 36165245 36165776 NC_060936.1 CM039045.1 98.12 True local misassembly 37139392 37139929 36166600 36167137 NC_060936.1 CM039045.1 98.14 True fake: not a misassembly (possible transposable element) 37161560 37164455 36167367 36170264 NC_060936.1 CM039045.1 97.45 True fake: not a misassembly (possible transposable element) 37143469 37144385 36170673 36171589 NC_060936.1 CM039045.1 97.6 True relocation, inconsistency = 21057 37165885 37166856 36172032 36173003 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36173391 36174362 NC_060936.1 CM039045.1 96.3 True local misassembly 37165885 37166856 36174750 36175721 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36176109 36177080 NC_060936.1 CM039045.1 96.09 True indel: indel (<= 5bp) 37168605 37169428 36177468 36178291 NC_060936.1 CM039045.1 96.97 True local misassembly 37169963 37170952 36178827 36179816 NC_060936.1 CM039045.1 96.67 True relocation, inconsistency = -39746 37132000 37135404 36180610 36184016 NC_060936.1 CM039045.1 97.06 True relocation, inconsistency = 23779 37161213 37164617 36186046 36189452 NC_060936.1 CM039045.1 97.06 True relocation, inconsistency = -2250827 34914086 34914746 36189748 36190408 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916780 36190428 36191087 NC_060936.1 CM039045.1 99.55 True local misassembly 34914086 34914746 36191107 36191767 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36192466 36193126 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 36193146 36193805 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36193825 36194485 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36194505 36195164 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36195184 36195844 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 36195864 36196523 NC_060936.1 CM039045.1 99.55 True local misassembly 34914086 34914746 36196543 36197203 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916780 36197223 36197882 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2244038 37161213 37164228 36198277 36201294 NC_060936.1 CM039045.1 97.51 True relocation, inconsistency = -1161068 36004191 36007335 36202325 36205467 NC_060936.1 CM039045.1 98.03 True relocation, inconsistency = -323263 35684073 35685557 36205468 36206953 NC_060936.1 CM039045.1 98.87 True local misassembly 35682455 35685436 36207926 36210909 NC_060936.1 CM039045.1 98.81 True relocation, inconsistency = -911207 34774230 34777380 36210910 36214060 NC_060936.1 CM039045.1 97.18 True relocation, inconsistency = 135881 34914086 34914746 36214885 36215545 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36216244 36216904 NC_060936.1 CM039045.1 99.85 True local misassembly 34915441 34916101 36217603 36218263 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36218283 36218942 NC_060936.1 CM039045.1 98.64 True local misassembly 34914086 34914746 36218962 36219622 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916780 36219642 36220301 NC_060936.1 CM039045.1 98.48 True local misassembly 34915441 34916101 36220321 36220981 NC_060936.1 CM039045.1 99.7 True relocation, inconsistency = 778386 35695019 35697735 36221513 36224230 NC_060936.1 CM039045.1 98.63 True relocation, inconsistency = 929447 36627183 36630063 36224231 36227112 NC_060936.1 CM039045.1 98.54 True relocation, inconsistency = -1715305 34916121 34916780 36228475 36229134 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = -144030 34774228 34777380 36230612 36233764 NC_060936.1 CM039045.1 97.24 True relocation, inconsistency = 134522 34914086 34914746 36235948 36236608 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 2250489 37165885 37166856 36237258 36238229 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36238617 36239588 NC_060936.1 CM039045.1 96.3 True indel: indel (<= 5bp) 37168605 37169428 36239976 36240799 NC_060936.1 CM039045.1 96.97 True local misassembly 37169963 37170952 36241335 36242324 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 36242694 36243683 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36244053 36245024 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36245412 36246383 NC_060936.1 CM039045.1 96.3 True indel: indel (<= 5bp) 37168605 37169428 36246771 36247594 NC_060936.1 CM039045.1 96.84 True local misassembly 37169963 37170952 36248130 36249119 NC_060936.1 CM039045.1 96.57 True local misassembly 37167245 37168216 36249489 36250460 NC_060936.1 CM039045.1 95.88 True local misassembly 37165885 37166856 36250848 36251819 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 36252207 36253178 NC_060936.1 CM039045.1 95.88 True local misassembly 37165885 37166856 36253566 36254537 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 36254925 36255896 NC_060936.1 CM039045.1 95.88 True local misassembly 37169963 37170952 36256284 36257273 NC_060936.1 CM039045.1 96.26 True local misassembly 37169963 37170952 36257643 36258632 NC_060936.1 CM039045.1 96.16 True local misassembly 37169963 37170952 36259002 36259991 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36260361 36261332 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36261720 36262691 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37168605 37169428 36263079 36263902 NC_060936.1 CM039045.1 97.21 True local misassembly 37169963 37170952 36264438 36265427 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36265797 36266768 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 36267156 36268127 NC_060936.1 CM039045.1 96.09 True indel: indel (<= 5bp) 37168605 37169428 36268515 36269338 NC_060936.1 CM039045.1 96.97 True local misassembly 37169963 37170952 36269874 36270863 NC_060936.1 CM039045.1 96.57 True relocation, inconsistency = -765096 36406105 36411587 36271112 36276599 NC_060936.1 CM039045.1 98.32 True relocation, inconsistency = -1497620 34914086 34914746 36276718 36277378 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36278077 36278737 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916780 36278757 36279416 NC_060936.1 CM039045.1 99.55 True local misassembly 34916121 34916750 36280116 36280745 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2262044 37178795 37179697 36280746 36281648 NC_060936.1 CM039045.1 97.23 True fake: not a misassembly (possible transposable element) 37130213 37135182 36282101 36287073 NC_060936.1 CM039045.1 97.18 True fake: not a misassembly (possible transposable element) 37185581 37186550 36287542 36288511 NC_060936.1 CM039045.1 96.39 True relocation, inconsistency = -50268 37136672 37137643 36288901 36289872 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36290260 36291231 NC_060936.1 CM039045.1 96.4 True indel: indel (<= 5bp) 37139392 37140215 36291619 36292442 NC_060936.1 CM039045.1 96.84 True relocation, inconsistency = -2225359 34915441 34916101 36293027 36293687 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36293707 36294366 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36294386 36295046 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36295066 36295725 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36295745 36296405 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36296425 36297084 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36297104 36297764 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36297784 36298443 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36298463 36299123 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36299143 36299802 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36299822 36300482 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 1935658 36852053 36854912 36300776 36303641 NC_060936.1 CM039045.1 98.19 True relocation, inconsistency = 312124 37168605 37169428 36305210 36306033 NC_060936.1 CM039045.1 96.84 True local misassembly 37169963 37170952 36306569 36307558 NC_060936.1 CM039045.1 96.57 True local misassembly 37171678 37172224 36308284 36308830 NC_060936.1 CM039045.1 95.25 True indel: indel (<= 5bp) 37172682 37173598 36309287 36310203 NC_060936.1 CM039045.1 97.6 True local misassembly 37175008 37175883 36310933 36311808 NC_060936.1 CM039045.1 95.89 True indel: stretch of mismatches 37176226 37177049 36312151 36312974 NC_060936.1 CM039045.1 97.09 True local misassembly 37178795 37179697 36314723 36315625 NC_060936.1 CM039045.1 97.23 True relocation, inconsistency = 10850 37192363 37193158 36317441 36318236 NC_060936.1 CM039045.1 97.49 True local misassembly 37195078 37195986 36320159 36321067 NC_060936.1 CM039045.1 97.03 True indel: indel (<= 5bp) 37196438 37197407 36321518 36322487 NC_060936.1 CM039045.1 97.32 True relocation, inconsistency = -2282405 34915441 34916101 36322926 36323586 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36323606 36324265 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36324285 36324945 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36324965 36325624 NC_060936.1 CM039045.1 99.55 True local misassembly 34916121 34916780 36326324 36326983 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 2276968 37195078 37195986 36328313 36329221 NC_060936.1 CM039045.1 97.14 True indel: indel (<= 5bp) 37196438 37197407 36329672 36330641 NC_060936.1 CM039045.1 97.32 True relocation, inconsistency = -16289 37181508 37182410 36331031 36331933 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37182868 37183837 36332390 36333359 NC_060936.1 CM039045.1 96.6 True indel: indel (> 5bp) 37184221 37185124 36333749 36334652 NC_060936.1 CM039045.1 97.68 True indel: indel (<= 5bp) 37185581 37186550 36335108 36336077 NC_060936.1 CM039045.1 96.6 True relocation, inconsistency = -46190 37140750 37141739 36336467 36337456 NC_060936.1 CM039045.1 96.16 True relocation, inconsistency = -1460218 35682455 35685557 36338390 36341494 NC_060936.1 CM039045.1 98.78 True relocation, inconsistency = -773288 34913407 34914042 36342632 36343267 NC_060936.1 CM039045.1 99.53 True local misassembly 34915441 34916101 36343311 36343971 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 2249134 37165885 37166856 36344621 36345592 NC_060936.1 CM039045.1 96.6 True indel: indel (<= 5bp) 37167245 37168216 36345980 36346951 NC_060936.1 CM039045.1 95.88 True local misassembly 37169963 37170952 36347339 36348328 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 36348698 36349687 NC_060936.1 CM039045.1 96.26 True local misassembly 37172682 37173598 36350057 36350973 NC_060936.1 CM039045.1 97.49 True local misassembly 37172682 37173598 36351416 36352332 NC_060936.1 CM039045.1 97.38 True relocation, inconsistency = -39068 37136672 37137643 36354474 36355445 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37138032 37139003 36355833 36356804 NC_060936.1 CM039045.1 96.09 True local misassembly 37136672 37137643 36357192 36358163 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37138032 37139003 36358551 36359522 NC_060936.1 CM039045.1 96.19 True relocation, inconsistency = 26494 37165885 37166856 36359910 36360881 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37167245 37168216 36361269 36362240 NC_060936.1 CM039045.1 96.09 True local misassembly 37169963 37170952 36362628 36363617 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36363987 36364958 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36365346 36366317 NC_060936.1 CM039045.1 96.3 True local misassembly 37169963 37170952 36366705 36367694 NC_060936.1 CM039045.1 96.16 True local misassembly 37165885 37166856 36368064 36369035 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37167245 37168216 36369423 36370394 NC_060936.1 CM039045.1 96.09 True local misassembly 37169963 37170952 36370782 36371771 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 36372141 36373130 NC_060936.1 CM039045.1 96.57 True local misassembly 37172682 37173598 36373500 36374416 NC_060936.1 CM039045.1 97.6 True local misassembly 37172682 37173598 36374859 36375775 NC_060936.1 CM039045.1 97.38 True relocation, inconsistency = 14931 37188972 37189941 36376218 36377187 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37190327 37191909 36377577 36379159 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37192363 37193158 36379616 36380411 NC_060936.1 CM039045.1 97.49 True local misassembly 37193718 37194634 36380975 36381891 NC_060936.1 CM039045.1 96.84 True indel: indel (<= 5bp) 37195078 37195986 36382334 36383242 NC_060936.1 CM039045.1 97.14 True indel: indel (<= 5bp) 37196438 37197407 36383693 36384662 NC_060936.1 CM039045.1 97.11 True relocation, inconsistency = -8825 37188972 37189941 36385052 36386021 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37190327 37191909 36386411 36387993 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37192363 37193158 36388450 36389245 NC_060936.1 CM039045.1 97.61 True relocation, inconsistency = -57050 37136672 37137643 36389809 36390780 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36391168 36392139 NC_060936.1 CM039045.1 96.09 True local misassembly 37136988 37137643 36392842 36393497 NC_060936.1 CM039045.1 96.65 True local misassembly 37136672 37137643 36393885 36394856 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 36395244 36396215 NC_060936.1 CM039045.1 95.99 True local misassembly 37140750 37141739 36396603 36397592 NC_060936.1 CM039045.1 96.36 True local misassembly 37136672 37137643 36397962 36398933 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37138032 37139003 36399321 36400292 NC_060936.1 CM039045.1 96.09 True local misassembly 37136672 37137643 36400680 36401651 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37138032 37139003 36402039 36403010 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37139392 37139922 36403398 36403928 NC_060936.1 CM039045.1 98.31 True local misassembly 37140750 37141739 36404756 36405745 NC_060936.1 CM039045.1 96.46 True relocation, inconsistency = 39399 37181508 37182038 36406115 36406645 NC_060936.1 CM039045.1 98.12 True local misassembly 37182868 37183837 36407473 36408442 NC_060936.1 CM039045.1 96.8 True local misassembly 37185581 37186550 36408832 36409801 NC_060936.1 CM039045.1 96.49 True local misassembly 37185581 37186550 36410191 36411160 NC_060936.1 CM039045.1 96.7 True fake: not a misassembly (possible transposable element) 37147013 37147836 36412375 36413198 NC_060936.1 CM039045.1 97.21 True fake: not a misassembly (possible transposable element) 37192363 37193158 36415626 36416421 NC_060936.1 CM039045.1 97.86 True relocation, inconsistency = -27837 37165885 37166856 36416985 36417956 NC_060936.1 CM039045.1 96.91 True local misassembly 37165885 37166856 36418344 36419315 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36419703 36420674 NC_060936.1 CM039045.1 96.19 True local misassembly 37169963 37170952 36421062 36422051 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36422421 36423392 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37167245 37168216 36423780 36424751 NC_060936.1 CM039045.1 96.3 True local misassembly 37169963 37170952 36425139 36426128 NC_060936.1 CM039045.1 96.57 True local misassembly 37169963 37170952 36426498 36427487 NC_060936.1 CM039045.1 96.57 True local misassembly 37169963 37170952 36427857 36428846 NC_060936.1 CM039045.1 96.46 True local misassembly 37165885 37166856 36429216 36430187 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 36430575 36431546 NC_060936.1 CM039045.1 95.99 True local misassembly 37165885 37166856 36431934 36432905 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36433293 36434264 NC_060936.1 CM039045.1 96.09 True local misassembly 37169963 37170952 36434652 36435641 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36436011 36437000 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36437370 36438359 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36438729 36439700 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 36440088 36441059 NC_060936.1 CM039045.1 96.3 True indel: indel (<= 5bp) 37168605 37169428 36441447 36442270 NC_060936.1 CM039045.1 97.09 True local misassembly 37172682 37173598 36442806 36443722 NC_060936.1 CM039045.1 97.71 True local misassembly 37181508 37182410 36445524 36446426 NC_060936.1 CM039045.1 97.23 True indel: indel (<= 5bp) 37182868 37183837 36446883 36447852 NC_060936.1 CM039045.1 96.6 True indel: indel (> 5bp) 37184221 37185124 36448242 36449145 NC_060936.1 CM039045.1 97.79 True local misassembly 37182868 37183837 36450960 36451929 NC_060936.1 CM039045.1 96.7 True indel: indel (> 5bp) 37184221 37185124 36452319 36453222 NC_060936.1 CM039045.1 97.57 True relocation, inconsistency = -777995 36407261 36411587 36453354 36457685 NC_060936.1 CM039045.1 98.31 True relocation, inconsistency = -1496265 34915441 34916101 36457804 36458464 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916127 34916780 36458490 36459143 NC_060936.1 CM039045.1 99.54 True local misassembly 34915441 34916101 36459163 36459823 NC_060936.1 CM039045.1 99.39 True indel: stretch of mismatches 34916121 34916750 36459843 36460472 NC_060936.1 CM039045.1 99.55 True relocation, inconsistency = 2219921 37136672 37137643 36460473 36461444 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36461832 36462803 NC_060936.1 CM039045.1 96.19 True relocation, inconsistency = -2226714 34914086 34914746 36464600 36465260 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36465960 36466620 NC_060936.1 CM039045.1 99.7 True local misassembly 34915441 34916101 36467319 36467979 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36467999 36468658 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36468678 36469338 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36469358 36470017 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36470037 36470697 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36470717 36471376 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36471396 36472056 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36472076 36472735 NC_060936.1 CM039045.1 99.09 True local misassembly 34916121 34916632 36473435 36473946 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 778386 35695019 35698254 36473947 36477183 NC_060936.1 CM039045.1 98.42 True relocation, inconsistency = 706673 36406110 36411448 36478366 36483709 NC_060936.1 CM039045.1 98.43 True relocation, inconsistency = -1496266 34916121 34916780 36484648 36485307 NC_060936.1 CM039045.1 98.94 True local misassembly 34914086 34914746 36485327 36485987 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36486686 36487346 NC_060936.1 CM039045.1 99.7 True relocation, inconsistency = 778386 35695014 35695738 36487873 36488597 NC_060936.1 CM039045.1 98.62 True indel: indel (<= 5bp) 35695739 35698876 36488599 36491736 NC_060936.1 CM039045.1 98.47 True indel: indel (<= 5bp) 35698877 35700015 36491739 36492877 NC_060936.1 CM039045.1 98.95 True relocation, inconsistency = -783819 34916197 34916780 36492878 36493461 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36493481 36494141 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36494161 36494820 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916750 36495520 36496149 NC_060936.1 CM039045.1 99.24 True relocation, inconsistency = 2262044 37178795 37179697 36496150 36497052 NC_060936.1 CM039045.1 97.34 True local misassembly 37184221 37185124 36501586 36502489 NC_060936.1 CM039045.1 97.68 True indel: indel (<= 5bp) 37185581 37186550 36502945 36503914 NC_060936.1 CM039045.1 96.29 True fake: not a misassembly (possible transposable element) 34915441 34916101 36504353 36505013 NC_060936.1 CM039045.1 99.7 True fake: not a misassembly (possible transposable element) 37181508 37182410 36505663 36506565 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37182868 37183837 36507022 36507991 NC_060936.1 CM039045.1 96.49 True indel: indel (> 5bp) 37184221 37185124 36508381 36509284 NC_060936.1 CM039045.1 97.57 True indel: indel (<= 5bp) 37185581 37186550 36509740 36510709 NC_060936.1 CM039045.1 96.39 True local misassembly 37192363 37193158 36511099 36511894 NC_060936.1 CM039045.1 97.49 True local misassembly 37193718 37194634 36512458 36513374 NC_060936.1 CM039045.1 96.84 True indel: indel (<= 5bp) 37195078 37195986 36513817 36514725 NC_060936.1 CM039045.1 97.36 True indel: indel (<= 5bp) 37196438 37197407 36515176 36516145 NC_060936.1 CM039045.1 96.8 True relocation, inconsistency = -33271 37165885 37166856 36517894 36518865 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37167245 37168216 36519253 36520224 NC_060936.1 CM039045.1 95.88 True local misassembly 37165885 37166856 36520612 36521583 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37167245 37168216 36521971 36522942 NC_060936.1 CM039045.1 96.09 True indel: indel (<= 5bp) 37168605 37169428 36523330 36524153 NC_060936.1 CM039045.1 96.84 True local misassembly 37169963 37170952 36524689 36525678 NC_060936.1 CM039045.1 96.46 True local misassembly 37165885 37166856 36526048 36527019 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37167245 37168216 36527407 36528378 NC_060936.1 CM039045.1 95.88 True indel: indel (<= 5bp) 37168605 37169428 36528766 36529589 NC_060936.1 CM039045.1 96.97 True local misassembly 37169963 37170952 36530125 36531114 NC_060936.1 CM039045.1 96.36 True local misassembly 37167245 37168216 36531484 36532455 NC_060936.1 CM039045.1 95.99 True local misassembly 37172682 37173598 36532843 36533759 NC_060936.1 CM039045.1 97.49 True relocation, inconsistency = -1425922 35747998 35753017 36534081 36539102 NC_060936.1 CM039045.1 98.67 True relocation, inconsistency = 1384479 37138032 37139003 36539638 36540609 NC_060936.1 CM039045.1 96.09 True indel: indel (<= 5bp) 37139392 37140215 36540997 36541820 NC_060936.1 CM039045.1 97.09 True local misassembly 37140750 37141739 36542356 36543345 NC_060936.1 CM039045.1 96.57 True local misassembly 37142465 37143011 36544071 36544617 NC_060936.1 CM039045.1 95.06 True indel: indel (<= 5bp) 37143469 37144385 36545074 36545990 NC_060936.1 CM039045.1 97.6 True indel: indel (<= 5bp) 37144829 37145794 36546433 36547398 NC_060936.1 CM039045.1 96.69 True indel: indel (<= 5bp) 37145795 37146410 36547400 36548015 NC_060936.1 CM039045.1 96.75 True relocation, inconsistency = -10195 37136672 37137643 36548472 36549443 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 36549831 36550802 NC_060936.1 CM039045.1 96.09 True local misassembly 37136672 37137643 36551190 36552161 NC_060936.1 CM039045.1 97.02 True local misassembly 37138348 37139003 36552864 36553519 NC_060936.1 CM039045.1 95.88 True local misassembly 37140750 37141739 36553907 36554896 NC_060936.1 CM039045.1 96.46 True local misassembly 37141066 37141739 36555581 36556254 NC_060936.1 CM039045.1 95.85 True local misassembly 37140750 37141739 36556624 36557613 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36557983 36558972 NC_060936.1 CM039045.1 96.36 True local misassembly 37141066 37141739 36559657 36560330 NC_060936.1 CM039045.1 96.14 True local misassembly 37136672 37137643 36560700 36561671 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36562059 36563030 NC_060936.1 CM039045.1 95.78 True local misassembly 37140750 37141739 36563418 36564407 NC_060936.1 CM039045.1 96.16 True local misassembly 37140750 37141739 36564777 36565766 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36566136 36567125 NC_060936.1 CM039045.1 96.46 True relocation, inconsistency = 23776 37165885 37166856 36567495 36568466 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36568854 36569825 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37168605 37169135 36570213 36570743 NC_060936.1 CM039045.1 98.31 True local misassembly 37169963 37170952 36571571 36572560 NC_060936.1 CM039045.1 96.26 True local misassembly 37169963 37170952 36572930 36573919 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36574289 36575278 NC_060936.1 CM039045.1 96.26 True local misassembly 37165885 37166856 36575648 36576619 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36577007 36577978 NC_060936.1 CM039045.1 96.19 True local misassembly 37165885 37166856 36578366 36579337 NC_060936.1 CM039045.1 96.91 True indel: indel (<= 5bp) 37167245 37168216 36579725 36580696 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37168605 37169428 36581084 36581907 NC_060936.1 CM039045.1 97.09 True local misassembly 37165885 37166415 36582443 36582973 NC_060936.1 CM039045.1 98.49 True local misassembly 37167245 37168216 36583801 36584772 NC_060936.1 CM039045.1 96.09 True local misassembly 37172682 37173598 36585160 36586076 NC_060936.1 CM039045.1 97.27 True local misassembly 37169963 37170952 36586519 36587508 NC_060936.1 CM039045.1 96.46 True local misassembly 37165885 37166856 36587878 36588849 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36589237 36590208 NC_060936.1 CM039045.1 96.19 True local misassembly 37165885 37166856 36590596 36591567 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36591955 36592926 NC_060936.1 CM039045.1 96.4 True local misassembly 37169963 37170952 36593314 36594303 NC_060936.1 CM039045.1 96.57 True local misassembly 37169963 37170952 36594673 36595662 NC_060936.1 CM039045.1 96.67 True local misassembly 37169963 37170952 36596032 36597021 NC_060936.1 CM039045.1 96.16 True local misassembly 37169963 37170952 36597391 36598380 NC_060936.1 CM039045.1 96.57 True local misassembly 37169963 37170952 36598750 36599739 NC_060936.1 CM039045.1 96.26 True local misassembly 37165885 37166856 36600109 36601080 NC_060936.1 CM039045.1 96.71 True indel: indel (<= 5bp) 37167245 37168216 36601468 36602439 NC_060936.1 CM039045.1 95.99 True local misassembly 37169963 37170952 36602827 36603816 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36604186 36605175 NC_060936.1 CM039045.1 96.16 True relocation, inconsistency = -30572 37140750 37141739 36605545 36606534 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 36606904 36607893 NC_060936.1 CM039045.1 96.46 True local misassembly 37140750 37141739 36608263 36609252 NC_060936.1 CM039045.1 96.46 True local misassembly 37136672 37137643 36609622 36610593 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36610981 36611952 NC_060936.1 CM039045.1 96.19 True local misassembly 37140750 37141739 36612340 36613329 NC_060936.1 CM039045.1 96.26 True local misassembly 37136672 37137643 36613699 36614670 NC_060936.1 CM039045.1 97.22 True local misassembly 37138345 37139003 36615370 36616028 NC_060936.1 CM039045.1 95.45 True local misassembly 37136985 37137643 36616728 36617386 NC_060936.1 CM039045.1 96.51 True indel: indel (<= 5bp) 37138032 37139003 36617774 36618745 NC_060936.1 CM039045.1 96.09 True local misassembly 37136672 37137643 36619133 36620104 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36620492 36621463 NC_060936.1 CM039045.1 96.19 True local misassembly 37140750 37141739 36621851 36622840 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36623210 36624199 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36624569 36625558 NC_060936.1 CM039045.1 96.46 True local misassembly 37136672 37137643 36625928 36626899 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36627287 36628258 NC_060936.1 CM039045.1 96.09 True local misassembly 37143469 37144385 36628646 36629562 NC_060936.1 CM039045.1 97.49 True local misassembly 37140750 37141739 36630005 36630994 NC_060936.1 CM039045.1 96.46 True local misassembly 37142465 37143011 36631720 36632266 NC_060936.1 CM039045.1 95.06 True indel: indel (<= 5bp) 37143469 37144385 36632723 36633639 NC_060936.1 CM039045.1 97.27 True relocation, inconsistency = 27854 37172682 37173598 36634082 36634998 NC_060936.1 CM039045.1 97.49 True relocation, inconsistency = -2426801 34746885 34749861 36635086 36638062 NC_060936.1 CM039045.1 97.14 True relocation, inconsistency = 2417287 37167245 37168216 36638159 36639130 NC_060936.1 CM039045.1 96.4 True indel: indel (<= 5bp) 37168605 37169428 36639518 36640341 NC_060936.1 CM039045.1 96.84 True local misassembly 37169963 37170952 36640877 36641866 NC_060936.1 CM039045.1 96.36 True relocation, inconsistency = -478822 36692413 36701455 36642149 36651182 NC_060936.1 CM039045.1 98.68 True relocation, inconsistency = 436021 37138032 37139003 36651738 36652709 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37139392 37140215 36653097 36653920 NC_060936.1 CM039045.1 97.21 True local misassembly 37140750 37141739 36654456 36655445 NC_060936.1 CM039045.1 96.46 True local misassembly 37138032 37139003 36655815 36656786 NC_060936.1 CM039045.1 96.3 True local misassembly 37136672 37137643 36657174 36658145 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36658533 36659504 NC_060936.1 CM039045.1 96.19 True local misassembly 37136672 37137643 36659892 36660863 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36661251 36662222 NC_060936.1 CM039045.1 96.3 True local misassembly 37140750 37141739 36662610 36663599 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36663969 36664958 NC_060936.1 CM039045.1 96.57 True local misassembly 37140750 37141739 36665328 36666317 NC_060936.1 CM039045.1 96.57 True local misassembly 37140750 37141739 36666687 36667676 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36668046 36669035 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 36669405 36670394 NC_060936.1 CM039045.1 96.57 True local misassembly 37136672 37137643 36670764 36671735 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37138032 37139003 36672123 36673094 NC_060936.1 CM039045.1 96.09 True local misassembly 37140750 37141739 36673482 36674471 NC_060936.1 CM039045.1 96.46 True local misassembly 37140750 37141739 36674841 36675830 NC_060936.1 CM039045.1 95.96 True local misassembly 37140750 37141739 36676200 36677189 NC_060936.1 CM039045.1 96.57 True relocation, inconsistency = 23776 37165885 37166856 36677559 36678530 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36678918 36679889 NC_060936.1 CM039045.1 96.4 True indel: indel (<= 5bp) 37168605 37169131 36680277 36680803 NC_060936.1 CM039045.1 98.48 True local misassembly 37169963 37170952 36681632 36682621 NC_060936.1 CM039045.1 96.57 True local misassembly 37168605 37169131 36682991 36683517 NC_060936.1 CM039045.1 98.48 True local misassembly 37169963 37170952 36684346 36685335 NC_060936.1 CM039045.1 96.57 True local misassembly 37167245 37167875 36685705 36686335 NC_060936.1 CM039045.1 96.99 True local misassembly 37168605 37169233 36687062 36687690 NC_060936.1 CM039045.1 97.93 True local misassembly 37169963 37170952 36688419 36689408 NC_060936.1 CM039045.1 96.57 True local misassembly 37165885 37166856 36689778 36690749 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 36691137 36692108 NC_060936.1 CM039045.1 96.19 True local misassembly 37169963 37170952 36692496 36693485 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 36693855 36694844 NC_060936.1 CM039045.1 96.36 True local misassembly 37172682 37173598 36695214 36696130 NC_060936.1 CM039045.1 97.49 True local misassembly 37172682 37173598 36696573 36697489 NC_060936.1 CM039045.1 97.49 True local misassembly 37167245 37168216 36697932 36698903 NC_060936.1 CM039045.1 95.99 True local misassembly 37167245 37168216 36699291 36700262 NC_060936.1 CM039045.1 95.99 True local misassembly 37170279 37170952 36700965 36701638 NC_060936.1 CM039045.1 96.14 True local misassembly 37165885 37166856 36702008 36702979 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36703367 36704338 NC_060936.1 CM039045.1 96.19 True local misassembly 37165885 37166856 36704726 36705697 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37167245 37168216 36706085 36707056 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37168605 37169375 36707444 36708214 NC_060936.1 CM039045.1 97.09 True fake: not a misassembly (possible transposable element) 37130988 37135015 36708215 36712243 NC_060936.1 CM039045.1 97.52 True fake: not a misassembly (possible transposable element) 37169963 37170952 36712879 36713868 NC_060936.1 CM039045.1 96.36 True relocation, inconsistency = -34650 37136672 37137643 36714238 36715209 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36715597 36716568 NC_060936.1 CM039045.1 96.3 True local misassembly 37136672 37137643 36716956 36717927 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36718315 36719286 NC_060936.1 CM039045.1 96.09 True local misassembly 37140750 37141739 36719674 36720663 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 36721033 36722022 NC_060936.1 CM039045.1 96.26 True local misassembly 37143469 37144385 36722392 36723308 NC_060936.1 CM039045.1 97.27 True local misassembly 37140750 37141739 36723751 36724740 NC_060936.1 CM039045.1 96.57 True relocation, inconsistency = 27854 37169963 37170952 36725110 36726099 NC_060936.1 CM039045.1 96.26 True local misassembly 37171678 37172224 36726825 36727371 NC_060936.1 CM039045.1 95.06 True indel: indel (<= 5bp) 37172682 37173598 36727828 36728744 NC_060936.1 CM039045.1 97.27 True relocation, inconsistency = -2258649 34915441 34916077 36729236 36729872 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34916121 34916780 36729916 36730575 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 36730595 36731255 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36731275 36731934 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916077 36731954 36732590 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 36732634 36733293 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 36733313 36733949 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916750 36733993 36734622 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2221281 37138032 37139003 36734623 36735594 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37139392 37140215 36735982 36736805 NC_060936.1 CM039045.1 97.09 True local misassembly 37140750 37141739 36737341 36738330 NC_060936.1 CM039045.1 96.57 True relocation, inconsistency = -2226717 34915441 34916077 36738749 36739385 NC_060936.1 CM039045.1 99.84 True local misassembly 34911254 34913363 36739994 36742103 NC_060936.1 CM039045.1 98.44 True local misassembly 34914086 34914722 36742486 36743122 NC_060936.1 CM039045.1 99.37 True relocation, inconsistency = 2221276 37136672 37137643 36743796 36744767 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36745155 36746126 NC_060936.1 CM039045.1 96.19 True local misassembly 37136672 37137643 36746514 36747485 NC_060936.1 CM039045.1 97.02 True local misassembly 37136672 37137643 36747873 36748844 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36749232 36750203 NC_060936.1 CM039045.1 96.09 True local misassembly 37140750 37141739 36750591 36751580 NC_060936.1 CM039045.1 96.46 True local misassembly 37140750 37141739 36751950 36752939 NC_060936.1 CM039045.1 96.36 True local misassembly 37136672 37137643 36753309 36754280 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 36754668 36755639 NC_060936.1 CM039045.1 96.3 True indel: indel (<= 5bp) 37139392 37140215 36756027 36756850 NC_060936.1 CM039045.1 96.97 True local misassembly 37140750 37141739 36757389 36758378 NC_060936.1 CM039045.1 96.36 True local misassembly 37136672 37137643 36758748 36759719 NC_060936.1 CM039045.1 97.02 True local misassembly 37136672 37137643 36760107 36761078 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 36761466 36762437 NC_060936.1 CM039045.1 96.09 True local misassembly 37140750 37141739 36762825 36763814 NC_060936.1 CM039045.1 96.36 True local misassembly 37136672 37137643 36764184 36765155 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 36765543 36766514 NC_060936.1 CM039045.1 96.19 True local misassembly 37140750 37141739 36766902 36767891 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 36768261 36769250 NC_060936.1 CM039045.1 96.57 True local misassembly 37143469 37144385 36769620 36770536 NC_060936.1 CM039045.1 97.49 True local misassembly 37143469 37144385 36770979 36771895 NC_060936.1 CM039045.1 97.6 True relocation, inconsistency = -2230791 34914086 34914746 36772387 36773047 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36773746 36774406 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36774426 36775085 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916077 36775105 36775741 NC_060936.1 CM039045.1 99.69 True indel: stretch of mismatches 34916121 34916780 36775785 36776444 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 36776464 36777100 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 36777144 36777803 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916077 36777823 36778459 NC_060936.1 CM039045.1 99.69 True indel: stretch of mismatches 34916121 34916780 36778503 36779162 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36779182 36779842 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36779862 36780521 NC_060936.1 CM039045.1 99.39 True local misassembly 34916121 34916750 36781221 36781850 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2276967 37193718 37194634 36781851 36782767 NC_060936.1 CM039045.1 97.06 True relocation, inconsistency = -1499940 35695019 35699611 36783092 36787687 NC_060936.1 CM039045.1 98.3 True relocation, inconsistency = 724333 36424109 36427228 36787852 36790971 NC_060936.1 CM039045.1 98.62 True relocation, inconsistency = 368783 36796026 36802572 36790986 36797535 NC_060936.1 CM039045.1 98.05 True relocation, inconsistency = -93028 36709545 36711482 36797536 36799474 NC_060936.1 CM039045.1 98.6 True relocation, inconsistency = 84543 36796026 36802572 36799475 36806028 NC_060936.1 CM039045.1 98.23 True relocation, inconsistency = -367753 36436680 36440136 36807889 36811345 NC_060936.1 CM039045.1 98.44 True fake: not a misassembly (possible transposable element) 36835383 36837131 36811346 36813095 NC_060936.1 CM039045.1 98.88 True fake: not a misassembly (possible transposable element) 36437131 36439057 36813096 36815018 NC_060936.1 CM039045.1 98.2 True relocation, inconsistency = 228535 36667593 36671842 36815019 36819268 NC_060936.1 CM039045.1 98.47 True relocation, inconsistency = -236008 36435835 36436726 36819269 36820157 NC_060936.1 CM039045.1 98.26 True relocation, inconsistency = 274729 36711456 36717017 36820158 36825715 NC_060936.1 CM039045.1 98.4 True relocation, inconsistency = -852380 35864638 35869067 36825716 36830140 NC_060936.1 CM039045.1 97.75 True relocation, inconsistency = 927069 36796963 36802572 36830967 36836581 NC_060936.1 CM039045.1 98.15 True relocation, inconsistency = -813654 35989539 35990482 36837202 36838145 NC_060936.1 CM039045.1 98.62 True relocation, inconsistency = 844883 36835717 36837131 36838497 36839911 NC_060936.1 CM039045.1 99.12 True relocation, inconsistency = -127649 36709483 36713846 36839912 36844268 NC_060936.1 CM039045.1 98.4 True fake: not a misassembly (possible transposable element) 36562388 36565189 36844269 36847073 NC_060936.1 CM039045.1 98.24 True fake: not a misassembly (possible transposable element) 36711896 36717017 36847074 36852191 NC_060936.1 CM039045.1 98.48 True relocation, inconsistency = -852380 35864638 35869067 36852192 36856616 NC_060936.1 CM039045.1 97.8 True relocation, inconsistency = 799052 36668120 36668671 36856617 36857168 NC_060936.1 CM039045.1 99.13 True local misassembly 36670136 36671563 36858632 36860059 NC_060936.1 CM039045.1 98.88 True relocation, inconsistency = -830623 35841395 35844209 36860514 36863331 NC_060936.1 CM039045.1 98.06 True relocation, inconsistency = 952192 36796402 36799380 36863332 36866313 NC_060936.1 CM039045.1 98.39 True relocation, inconsistency = 27157 36829359 36830125 36869135 36869901 NC_060936.1 CM039045.1 99.22 True relocation, inconsistency = -331410 36499174 36501560 36870360 36872745 NC_060936.1 CM039045.1 98.11 True relocation, inconsistency = -698517 35803166 35809193 36872868 36878900 NC_060936.1 CM039045.1 97.89 True relocation, inconsistency = 817715 36628658 36630063 36880650 36882055 NC_060936.1 CM039045.1 98.86 True relocation, inconsistency = -69616 36561137 36565215 36882745 36886826 NC_060936.1 CM039045.1 98.26 True relocation, inconsistency = 18678 36584394 36589555 36887327 36892488 NC_060936.1 CM039045.1 98.1 True relocation, inconsistency = 209849 36799405 36800877 36892489 36893961 NC_060936.1 CM039045.1 97.92 True relocation, inconsistency = -158235 36643158 36647393 36894477 36898713 NC_060936.1 CM039045.1 98.49 True relocation, inconsistency = -1956813 34690978 34691698 36899111 36899831 NC_060936.1 CM039045.1 97.23 True relocation, inconsistency = 1935422 36630713 36637598 36903424 36910314 NC_060936.1 CM039045.1 98.45 True relocation, inconsistency = -938953 35698646 35700034 36910315 36911705 NC_060936.1 CM039045.1 98.59 True relocation, inconsistency = -783819 34916216 34916780 36911706 36912270 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 2260685 37178795 37179697 36913600 36914502 NC_060936.1 CM039045.1 97.12 True relocation, inconsistency = -11550 37169963 37170952 36916318 36917307 NC_060936.1 CM039045.1 96.36 True local misassembly 37171678 37172224 36918033 36918579 NC_060936.1 CM039045.1 95.06 True indel: indel (<= 5bp) 37172682 37173598 36919036 36919952 NC_060936.1 CM039045.1 97.6 True relocation, inconsistency = -33291 37140750 37141739 36920395 36921384 NC_060936.1 CM039045.1 96.46 True local misassembly 37142465 37143011 36922110 36922656 NC_060936.1 CM039045.1 95.06 True indel: indel (<= 5bp) 37143469 37144385 36923113 36924029 NC_060936.1 CM039045.1 97.49 True relocation, inconsistency = 21057 37165885 37166856 36924472 36925443 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 36925831 36926802 NC_060936.1 CM039045.1 96.19 True indel: indel (<= 5bp) 37168605 37169428 36927190 36928013 NC_060936.1 CM039045.1 97.09 True local misassembly 37169963 37170952 36928549 36929538 NC_060936.1 CM039045.1 96.26 True relocation, inconsistency = -2255930 34915441 34916101 36929957 36930617 NC_060936.1 CM039045.1 99.09 True local misassembly 34913407 34914042 36930637 36931272 NC_060936.1 CM039045.1 99.06 True local misassembly 34915441 34916101 36931316 36931976 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36931996 36932655 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 36932675 36933335 NC_060936.1 CM039045.1 99.85 True indel: stretch of mismatches 34916121 34916780 36933355 36934014 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36934034 36934694 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36934714 36935373 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916750 36936073 36936702 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2262044 37178795 37179697 36936703 36937605 NC_060936.1 CM039045.1 97.34 True local misassembly 37181508 37182410 36939421 36940323 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37182868 37183836 36940780 36941748 NC_060936.1 CM039045.1 96.49 True relocation, inconsistency = -43477 37140750 37141739 36942139 36943128 NC_060936.1 CM039045.1 96.36 True local misassembly 37142465 37143011 36943854 36944400 NC_060936.1 CM039045.1 95.06 True relocation, inconsistency = -1139672 36004135 36007335 36945196 36948398 NC_060936.1 CM039045.1 98.13 True relocation, inconsistency = 1158014 37165885 37166856 36948934 36949905 NC_060936.1 CM039045.1 96.91 True local misassembly 37165885 37166856 36950293 36951264 NC_060936.1 CM039045.1 96.71 True indel: indel (<= 5bp) 37167245 37168216 36951652 36952623 NC_060936.1 CM039045.1 95.99 True local misassembly 37169963 37170952 36953011 36954000 NC_060936.1 CM039045.1 96.26 True local misassembly 37169963 37170952 36954370 36955359 NC_060936.1 CM039045.1 96.16 True local misassembly 37165885 37166856 36955729 36956700 NC_060936.1 CM039045.1 96.71 True indel: indel (<= 5bp) 37167245 37168216 36957088 36958059 NC_060936.1 CM039045.1 96.19 True local misassembly 37169963 37170952 36958447 36959436 NC_060936.1 CM039045.1 96.26 True local misassembly 37165885 37166856 36959806 36960777 NC_060936.1 CM039045.1 96.81 True indel: indel (<= 5bp) 37167245 37168216 36961165 36962136 NC_060936.1 CM039045.1 95.99 True local misassembly 37169963 37170952 36962524 36963513 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36963883 36964872 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 36965242 36966231 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 36966601 36967590 NC_060936.1 CM039045.1 96.57 True relocation, inconsistency = -30572 37140750 37141739 36967960 36968949 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 36969319 36970308 NC_060936.1 CM039045.1 96.36 True local misassembly 37143469 37144385 36970678 36971594 NC_060936.1 CM039045.1 97.49 True local misassembly 37143469 37144385 36972037 36972953 NC_060936.1 CM039045.1 96.95 True relocation, inconsistency = -2229436 34915441 34916101 36973445 36974105 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36974125 36974784 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36974804 36975464 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36975484 36976143 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36976163 36976823 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36976843 36977502 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36977522 36978182 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36978202 36978861 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36978881 36979541 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36979561 36980220 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36980240 36980900 NC_060936.1 CM039045.1 99.24 True indel: stretch of mismatches 34916121 34916780 36980920 36981579 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36981599 36982259 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36982279 36982938 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36982958 36983618 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36983638 36984297 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36984317 36984977 NC_060936.1 CM039045.1 99.55 True indel: stretch of mismatches 34916121 34916780 36984997 36985656 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36985676 36986336 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36986356 36987015 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 36987035 36987695 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36987715 36988374 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36988394 36989054 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36989074 36989733 NC_060936.1 CM039045.1 99.09 True local misassembly 34915441 34916101 36989753 36990413 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 36990433 36991092 NC_060936.1 CM039045.1 99.39 True local misassembly 34916121 34916707 36991792 36992378 NC_060936.1 CM039045.1 98.98 True translocation, scaffold gap is present 49456085 49462738 37000355 36993698 NC_060929.1 CM039045.1 97.76 True local misassembly 49456563 49458802 37002595 37000356 NC_060929.1 CM039045.1 97.7 True relocation, inconsistency = 164756 49290538 49291611 37003865 37002791 NC_060929.1 CM039045.1 97.67 True translocation 35695504 35700034 37003984 37008517 NC_060936.1 CM039045.1 98.59 True relocation, inconsistency = -783819 34916216 34916780 37008518 37009082 NC_060936.1 CM039045.1 99.09 True local misassembly 34916121 34916750 37009782 37010411 NC_060936.1 CM039045.1 99.09 True relocation, inconsistency = 2219921 37136672 37137643 37010412 37011383 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37138032 37139003 37011771 37012742 NC_060936.1 CM039045.1 96.09 True relocation, inconsistency = 27855 37168605 37169428 37014489 37015312 NC_060936.1 CM039045.1 97.09 True local misassembly 37169963 37170952 37015848 37016837 NC_060936.1 CM039045.1 96.26 True local misassembly 37172682 37173598 37018565 37019481 NC_060936.1 CM039045.1 97.16 True relocation, inconsistency = 8827 37182868 37183837 37019924 37020893 NC_060936.1 CM039045.1 96.91 True relocation, inconsistency = -18342 37165885 37166856 37021283 37022254 NC_060936.1 CM039045.1 97.22 True indel: indel (<= 5bp) 37167245 37168216 37022642 37023613 NC_060936.1 CM039045.1 96.09 True local misassembly 37165885 37166856 37024001 37024972 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37167245 37168216 37025360 37026331 NC_060936.1 CM039045.1 96.09 True local misassembly 37169963 37170952 37026719 37027708 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 37028078 37029067 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 37029437 37030426 NC_060936.1 CM039045.1 96.36 True local misassembly 37169963 37170952 37030796 37031785 NC_060936.1 CM039045.1 96.26 True local misassembly 37169963 37170952 37032155 37033144 NC_060936.1 CM039045.1 96.26 True local misassembly 37165885 37166856 37033514 37034485 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37168216 37034873 37035844 NC_060936.1 CM039045.1 96.19 True relocation, inconsistency = -27854 37140750 37141739 37036232 37037221 NC_060936.1 CM039045.1 96.46 True local misassembly 37136672 37137643 37037591 37038562 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37138032 37139003 37038950 37039921 NC_060936.1 CM039045.1 96.3 True local misassembly 37140750 37141739 37040309 37041298 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 37041668 37042657 NC_060936.1 CM039045.1 96.36 True local misassembly 37140750 37141739 37043027 37044016 NC_060936.1 CM039045.1 96.26 True local misassembly 37136672 37137643 37044386 37045357 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37138032 37139003 37045745 37046716 NC_060936.1 CM039045.1 95.99 True local misassembly 37140750 37141739 37047104 37048093 NC_060936.1 CM039045.1 96.26 True local misassembly 37140750 37141739 37048463 37049452 NC_060936.1 CM039045.1 96.57 True local misassembly 37143469 37144385 37049822 37050738 NC_060936.1 CM039045.1 97.38 True local misassembly 37143469 37144385 37051181 37052097 NC_060936.1 CM039045.1 97.16 True relocation, inconsistency = -2229436 34915441 34916101 37052589 37053249 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37053269 37053928 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 37053948 37054608 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37054628 37055287 NC_060936.1 CM039045.1 99.24 True local misassembly 34915441 34916101 37055307 37055967 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37055987 37056646 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916101 37056666 37057326 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37057346 37058005 NC_060936.1 CM039045.1 98.94 True local misassembly 34914086 34914746 37058025 37058685 NC_060936.1 CM039045.1 99.24 True local misassembly 34916121 34916750 37058705 37059334 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2279687 37196438 37197407 37059335 37060304 NC_060936.1 CM039045.1 97.11 True relocation, inconsistency = -2450557 34746885 34749861 37060339 37063315 NC_060936.1 CM039045.1 97.28 True relocation, inconsistency = 2414568 37165885 37166856 37064771 37065742 NC_060936.1 CM039045.1 97.33 True indel: indel (<= 5bp) 37167245 37168216 37066130 37067101 NC_060936.1 CM039045.1 96.09 True local misassembly 37165885 37166856 37067489 37068460 NC_060936.1 CM039045.1 97.12 True indel: indel (<= 5bp) 37167245 37167897 37068848 37069500 NC_060936.1 CM039045.1 97.55 True local misassembly 37165940 37166856 37070258 37071174 NC_060936.1 CM039045.1 97.16 True indel: indel (<= 5bp) 37167245 37168216 37071562 37072533 NC_060936.1 CM039045.1 96.3 True local misassembly 37169963 37170952 37072921 37073910 NC_060936.1 CM039045.1 96.67 True local misassembly 37169963 37170952 37074280 37075269 NC_060936.1 CM039045.1 96.67 True local misassembly 37169963 37170952 37075639 37076628 NC_060936.1 CM039045.1 96.46 True local misassembly 37169963 37170952 37076998 37077987 NC_060936.1 CM039045.1 96.57 True local misassembly 37172682 37173598 37078357 37079273 NC_060936.1 CM039045.1 97.49 True local misassembly 37172682 37173598 37079716 37080632 NC_060936.1 CM039045.1 97.6 True relocation, inconsistency = -2258649 34915441 34916056 37081124 37081739 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 37081804 37082463 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 37082483 37083143 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37083163 37083822 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916077 37083842 37084478 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34916121 34916780 37084522 37085181 NC_060936.1 CM039045.1 99.39 True local misassembly 34915441 34916077 37085201 37085837 NC_060936.1 CM039045.1 99.69 True indel: stretch of mismatches 34916121 34916780 37085881 37086540 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916056 37086560 37087175 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 34916121 34916780 37087240 37087899 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916101 37087919 37088579 NC_060936.1 CM039045.1 99.7 True indel: stretch of mismatches 34916121 34916780 37088599 37089258 NC_060936.1 CM039045.1 99.55 True local misassembly 34915441 34916077 37089278 37089914 NC_060936.1 CM039045.1 99.37 True indel: stretch of mismatches 34916121 34916750 37089958 37090587 NC_060936.1 CM039045.1 99.39 True relocation, inconsistency = 2250494 37167245 37168216 37090588 37091559 NC_060936.1 CM039045.1 96.09 True relocation, inconsistency = -467952 36700533 36707843 37091828 37099140 NC_060936.1 CM039045.1 98.67 True relocation, inconsistency = -81843 36626001 36629738 37099141 37102877 NC_060936.1 CM039045.1 98.13 True relocation, inconsistency = -56375 36573541 36576247 37103055 37105761 NC_060936.1 CM039045.1 98.34 True local misassembly 36576617 36577285 37106469 37107137 NC_060936.1 CM039045.1 98.21 True relocation, inconsistency = -543702 36033707 36034376 37107261 37107930 NC_060936.1 CM039045.1 98.19 True relocation, inconsistency = 633009 36667386 36671780 37107931 37112324 NC_060936.1 CM039045.1 98.0 True relocation, inconsistency = 37702 36709483 36715205 37112325 37118048 NC_060936.1 CM039045.1 98.58 True relocation, inconsistency = -725725 35989481 35993508 37118049 37122076 NC_060936.1 CM039045.1 98.25 True relocation, inconsistency = -188437 35805411 35807916 37122416 37124923 NC_060936.1 CM039045.1 97.85 True relocation, inconsistency = 28513 35836430 35843916 37124924 37132410 NC_060936.1 CM039045.1 97.85 True local misassembly 35841882 35844763 37132411 37135295 NC_060936.1 CM039045.1 97.83 True relocation, inconsistency = 1238855 37083619 37085403 37135296 37137081 NC_060936.1 CM039045.1 97.55 True relocation, inconsistency = -9817 37076245 37078584 37137740 37140081 NC_060936.1 CM039045.1 97.91 True relocation, inconsistency = -81805 36996820 37000685 37140122 37143962 NC_060936.1 CM039045.1 97.05 True relocation, inconsistency = -87481 36913205 36919872 37143963 37150623 NC_060936.1 CM039045.1 97.08 True relocation, inconsistency = -2202213 34717660 34718752 37150624 37151716 NC_060936.1 CM039045.1 96.81 True relocation, inconsistency = 444280 35163078 35165814 37151762 37154498 NC_060936.1 CM039045.1 98.43 True relocation, inconsistency = 1832173 36998449 37003146 37154960 37159654 NC_060936.1 CM039045.1 98.17 True relocation, inconsistency = 184303 37187450 37188917 37159655 37161121 NC_060936.1 CM039045.1 97.12 True relocation, inconsistency = -2432563 34756428 34757287 37161195 37162054 NC_060936.1 CM039045.1 96.63 True relocation, inconsistency = 2240792 36998449 36999936 37162424 37163911 NC_060936.1 CM039045.1 98.72 True relocation, inconsistency = 178876 37178813 37184605 37163912 37169714 NC_060936.1 CM039045.1 96.8 True fake: not a misassembly (possible transposable element) 37130213 37132468 37170345 37172599 NC_060936.1 CM039045.1 97.21 True fake: not a misassembly (possible transposable element) 37187829 37188917 37172600 37173688 NC_060936.1 CM039045.1 97.02 True relocation, inconsistency = -22750 37167591 37169428 37175112 37176949 NC_060936.1 CM039045.1 96.68 True indel: stretch of mismatches 37169741 37171440 37177262 37178961 NC_060936.1 CM039045.1 96.0 True indel: stretch of mismatches 37171678 37174769 37179199 37182290 NC_060936.1 CM039045.1 96.6 True local misassembly 37175449 37176225 37182291 37183067 NC_060936.1 CM039045.1 97.3 True indel: indel (<= 5bp) 37176226 37177102 37183069 37183945 NC_060936.1 CM039045.1 96.24 True local misassembly 37177871 37178912 37184717 37185758 NC_060936.1 CM039045.1 96.35 True indel: indel (<= 5bp) 37178914 37179817 37185759 37186662 NC_060936.1 CM039045.1 96.24 True indel: indel (<= 5bp) 37179868 37181457 37186714 37188303 NC_060936.1 CM039045.1 97.17 True indel: indel (<= 5bp) 37181458 37183940 37188308 37190790 NC_060936.1 CM039045.1 96.9 True indel: indel (> 5bp) 37184173 37185243 37191030 37192100 NC_060936.1 CM039045.1 96.64 True indel: indel (<= 5bp) 37185598 37186842 37192452 37193696 NC_060936.1 CM039045.1 97.03 True relocation, inconsistency = -11539 37175686 37176225 37194079 37194618 NC_060936.1 CM039045.1 97.96 True indel: indel (<= 5bp) 37176226 37177385 37194620 37195779 NC_060936.1 CM039045.1 97.59 True indel: indel (<= 5bp) 37177871 37178475 37196270 37196874 NC_060936.1 CM039045.1 96.69 True local misassembly 37178816 37179867 37196875 37197926 NC_060936.1 CM039045.1 96.67 True indel: indel (<= 5bp) 37179868 37180517 37197930 37198579 NC_060936.1 CM039045.1 97.23 True local misassembly 37181553 37187875 37199617 37205948 NC_060936.1 CM039045.1 97.24 True fake: not a misassembly (possible transposable element) 37160803 37162664 37207742 37209602 NC_060936.1 CM039045.1 97.53 True fake: not a misassembly (possible transposable element) 37189311 37190604 37210444 37211741 NC_060936.1 CM039045.1 97.0 True relocation, inconsistency = -19684 37170976 37171677 37211797 37212498 NC_060936.1 CM039045.1 98.01 True local misassembly 37177871 37178736 37212580 37213445 NC_060936.1 CM039045.1 95.61 True indel: indel (<= 5bp) 37178737 37179871 37213447 37214581 NC_060936.1 CM039045.1 97.8 True indel: indel (<= 5bp) 37179872 37181457 37214585 37216170 NC_060936.1 CM039045.1 97.35 True indel: indel (<= 5bp) 37181458 37183099 37216175 37217816 NC_060936.1 CM039045.1 97.02 True local misassembly 37178574 37179870 37218381 37219677 NC_060936.1 CM039045.1 96.84 True indel: indel (<= 5bp) 37179930 37181457 37219741 37221268 NC_060936.1 CM039045.1 97.12 True local misassembly 37182647 37183944 37222120 37223417 NC_060936.1 CM039045.1 96.92 True indel: indel (> 5bp) 37184171 37186842 37223652 37226323 NC_060936.1 CM039045.1 97.31 True local misassembly 37182647 37183943 37226879 37228175 NC_060936.1 CM039045.1 96.76 True indel: indel (> 5bp) 37184171 37185472 37228411 37229712 NC_060936.1 CM039045.1 97.62 True indel: indel (<= 5bp) 37185474 37186101 37229713 37230340 NC_060936.1 CM039045.1 97.29 True relocation, inconsistency = -8483 37177871 37179137 37230593 37231859 NC_060936.1 CM039045.1 96.84 True indel: indel (<= 5bp) 37179140 37179775 37231860 37232495 NC_060936.1 CM039045.1 96.23 True relocation, inconsistency = -68954 37111195 37118520 37232869 37240191 NC_060936.1 CM039045.1 97.48 True fake: not a misassembly (possible transposable element) 37186452 37187582 37240192 37241327 NC_060936.1 CM039045.1 96.9 True fake: not a misassembly (possible transposable element) 37119655 37120225 37241328 37241898 NC_060936.1 CM039045.1 96.48 True local misassembly 37125075 37127002 37241993 37243919 NC_060936.1 CM039045.1 96.94 True relocation, inconsistency = -11549 37116637 37117249 37245103 37245715 NC_060936.1 CM039045.1 97.72 True local misassembly 37118668 37121286 37247474 37250092 NC_060936.1 CM039045.1 97.21 True indel: indel (<= 5bp) 37121288 37122282 37250093 37251087 NC_060936.1 CM039045.1 97.49 True local misassembly 37122283 37123072 37251428 37252217 NC_060936.1 CM039045.1 96.33 True indel: indel (<= 5bp) 37123175 37124532 37252318 37253675 NC_060936.1 CM039045.1 96.17 True indel: stretch of mismatches 37124908 37126721 37254051 37255864 NC_060936.1 CM039045.1 97.46 True indel: indel (<= 5bp) 37126723 37127249 37255865 37256391 NC_060936.1 CM039045.1 97.53 True indel: indel (<= 5bp) 37127250 37127845 37256393 37256988 NC_060936.1 CM039045.1 98.32 True local misassembly 37130273 37130884 37257378 37257989 NC_060936.1 CM039045.1 96.9 True indel: indel (<= 5bp) 37130886 37132343 37257990 37259447 NC_060936.1 CM039045.1 97.67 True relocation, inconsistency = -13246 37119100 37121286 37259450 37261636 NC_060936.1 CM039045.1 97.49 True indel: indel (<= 5bp) 37121288 37122282 37261637 37262631 NC_060936.1 CM039045.1 97.49 True local misassembly 37122283 37123072 37262972 37263761 NC_060936.1 CM039045.1 96.33 True indel: indel (<= 5bp) 37123175 37124532 37263862 37265219 NC_060936.1 CM039045.1 96.17 True indel: stretch of mismatches 37124908 37126721 37265595 37267408 NC_060936.1 CM039045.1 97.41 True indel: indel (<= 5bp) 37126723 37127249 37267409 37267935 NC_060936.1 CM039045.1 96.77 True indel: indel (<= 5bp) 37127250 37127770 37267937 37268457 NC_060936.1 CM039045.1 99.04 True fake: not a misassembly (possible transposable element) 34661540 34662977 37269095 37270531 NC_060936.1 CM039045.1 96.59 True fake: not a misassembly (possible transposable element) 37130230 37131468 37270577 37271816 NC_060936.1 CM039045.1 98.47 True relocation, inconsistency = -2467207 34665100 34666067 37272655 37273622 NC_060936.1 CM039045.1 97.11 True local misassembly 34666755 34667506 37274655 37275406 NC_060936.1 CM039045.1 96.94 True relocation, inconsistency = 2458381 37125916 37129426 37275435 37278944 NC_060936.1 CM039045.1 97.69 True relocation, inconsistency = -2471624 34657803 34662552 37278945 37283694 NC_060936.1 CM039045.1 96.84 True relocation, inconsistency = 2455319 37118611 37119915 37284434 37285738 NC_060936.1 CM039045.1 97.32 True local misassembly 37120256 37122733 37285739 37288216 NC_060936.1 CM039045.1 97.09 True local misassembly 37127969 37129835 37288358 37290224 NC_060936.1 CM039045.1 97.8 True local misassembly 37130175 37132343 37290225 37292393 NC_060936.1 CM039045.1 97.56 True indel: indel (<= 5bp) 37132345 37133926 37292394 37293975 NC_060936.1 CM039045.1 97.52 True local misassembly 37130190 37133451 37293976 37297235 NC_060936.1 CM039045.1 97.4 True relocation, inconsistency = -2456684 34677017 34678220 37297485 37298688 NC_060936.1 CM039045.1 96.51 True relocation, inconsistency = 15968 34695554 34697228 37300054 37301726 NC_060936.1 CM039045.1 96.76 True relocation, inconsistency = 2426450 37123679 37128486 37301727 37306534 NC_060936.1 CM039045.1 97.17 True fake: not a misassembly (possible transposable element) 34684290 34685738 37308492 37309939 NC_060936.1 CM039045.1 96.96 True fake: not a misassembly (possible transposable element) 37130230 37135448 37311504 37316724 NC_060936.1 CM039045.1 97.59 True relocation, inconsistency = -11208 37125029 37127008 37317513 37319492 NC_060936.1 CM039045.1 97.27 True relocation, inconsistency = -2432566 34696693 34698539 37321743 37323589 NC_060936.1 CM039045.1 97.83 True local misassembly 34693315 34694187 37324141 37325013 NC_060936.1 CM039045.1 96.56 True relocation, inconsistency = 2435281 37130103 37133581 37325648 37329125 NC_060936.1 CM039045.1 97.7 True relocation, inconsistency = -15285 37118478 37120202 37329307 37331031 NC_060936.1 CM039045.1 97.22 True relocation, inconsistency = -11542 37109534 37110113 37331905 37332486 NC_060936.1 CM039045.1 98.45 True local misassembly 37108505 37110115 37333933 37335543 NC_060936.1 CM039045.1 96.28 True fake: not a misassembly (possible transposable element) 37197823 37198404 37336319 37336900 NC_060936.1 CM039045.1 98.97 True fake: not a misassembly (possible transposable element) 37110865 37112091 37337654 37338878 NC_060936.1 CM039045.1 96.74 True relocation, inconsistency = -2341198 34771007 34772708 37338992 37340693 NC_060936.1 CM039045.1 97.78 True relocation, inconsistency = -59953 34712756 34716169 37340694 37344108 NC_060936.1 CM039045.1 97.54 True relocation, inconsistency = 2404713 37120883 37121440 37344109 37344666 NC_060936.1 CM039045.1 97.46 True fake: not a misassembly (possible transposable element) 34754819 34756279 37345382 37346842 NC_060936.1 CM039045.1 97.74 True fake: not a misassembly (possible transposable element) 37130230 37133581 37346988 37350339 NC_060936.1 CM039045.1 97.88 True relocation, inconsistency = -15285 37118541 37120300 37350584 37352343 NC_060936.1 CM039045.1 97.22 True relocation, inconsistency = 76747 37197823 37198404 37353119 37353700 NC_060936.1 CM039045.1 99.48 True relocation, inconsistency = -2567391 34632096 34634021 37354783 37356706 NC_060936.1 CM039045.1 96.83 True local misassembly 34634533 34635386 37357218 37358071 NC_060936.1 CM039045.1 97.41 True relocation, inconsistency = 77099 34712486 34713474 37358072 37359060 NC_060936.1 CM039045.1 96.87 True fake: not a misassembly (possible transposable element) 36858158 36863481 37359522 37364850 NC_060936.1 CM039045.1 97.24 True fake: not a misassembly (possible transposable element) 34719264 34720988 37364851 37366576 NC_060936.1 CM039045.1 96.6 True relocation, inconsistency = 2301899 37023572 37025516 37367261 37369205 NC_060936.1 CM039045.1 96.97 True fake: not a misassembly (possible transposable element) 36867640 36868517 37369349 37370226 NC_060936.1 CM039045.1 97.95 True fake: not a misassembly (possible transposable element) 37028022 37028799 37371378 37372155 NC_060936.1 CM039045.1 97.94 True relocation, inconsistency = -2286272 34743856 34745762 37373484 37375391 NC_060936.1 CM039045.1 97.85 True relocation, inconsistency = 2379241 37126494 37129835 37376882 37380223 NC_060936.1 CM039045.1 97.55 True local misassembly 37130175 37132343 37380224 37382392 NC_060936.1 CM039045.1 97.19 True indel: indel (<= 5bp) 37132375 37133559 37382422 37383606 NC_060936.1 CM039045.1 97.89 True local misassembly 37130847 37133190 37383607 37385950 NC_060936.1 CM039045.1 97.61 True local misassembly 37133533 37134273 37385951 37386691 NC_060936.1 CM039045.1 97.3 True local misassembly 37127821 37128759 37386692 37387630 NC_060936.1 CM039045.1 97.02 True indel: indel (<= 5bp) 37128761 37129835 37387631 37388705 NC_060936.1 CM039045.1 97.58 True local misassembly 37130175 37134189 37388706 37392720 NC_060936.1 CM039045.1 97.29 True local misassembly 37135714 37138102 37393907 37396295 NC_060936.1 CM039045.1 98.33 True indel: indel (<= 5bp) 37138104 37138731 37396296 37396923 NC_060936.1 CM039045.1 96.18 True local misassembly 37138732 37139730 37397264 37398262 NC_060936.1 CM039045.1 97.1 True local misassembly 37140529 37141449 37399403 37400323 NC_060936.1 CM039045.1 97.07 True local misassembly 37141450 37142464 37400664 37401678 NC_060936.1 CM039045.1 97.73 True local misassembly 37142465 37144236 37402020 37403791 NC_060936.1 CM039045.1 97.57 True relocation, inconsistency = 17321 37161558 37163631 37403792 37405865 NC_060936.1 CM039045.1 97.54 True local misassembly 37160914 37162120 37405866 37407072 NC_060936.1 CM039045.1 97.09 True local misassembly 37164927 37167315 37408182 37410570 NC_060936.1 CM039045.1 98.33 True indel: indel (<= 5bp) 37167317 37167944 37410571 37411198 NC_060936.1 CM039045.1 96.02 True local misassembly 37167945 37168943 37411539 37412537 NC_060936.1 CM039045.1 97.1 True local misassembly 37169742 37170662 37413678 37414598 NC_060936.1 CM039045.1 97.07 True local misassembly 37170663 37171677 37414939 37415953 NC_060936.1 CM039045.1 97.73 True local misassembly 37171678 37173381 37416295 37417998 NC_060936.1 CM039045.1 97.71 True local misassembly 37173382 37174269 37418339 37419226 NC_060936.1 CM039045.1 97.65 True relocation, inconsistency = -8837 37165433 37167306 37419227 37421100 NC_060936.1 CM039045.1 97.76 True local misassembly 37167647 37168178 37421101 37421632 NC_060936.1 CM039045.1 97.37 True indel: indel (<= 5bp) 37168180 37169428 37421633 37422881 NC_060936.1 CM039045.1 97.44 True local misassembly 37175545 37176224 37422882 37423561 NC_060936.1 CM039045.1 97.04 True indel: indel (<= 5bp) 37176225 37177356 37423563 37424694 NC_060936.1 CM039045.1 97.79 True local misassembly 37180070 37181428 37424695 37426053 NC_060936.1 CM039045.1 97.06 True relocation, inconsistency = -8829 37172600 37174312 37426054 37427766 NC_060936.1 CM039045.1 97.26 True local misassembly 37174804 37187804 37427918 37440944 NC_060936.1 CM039045.1 97.37 True relocation, inconsistency = 15665 37205280 37205856 37442755 37443331 NC_060936.1 CM039045.1 95.49 True local misassembly 37208721 37209924 37445862 37447066 NC_060936.1 CM039045.1 96.27 True local misassembly 37218387 37382075 37458970 37622917 NC_060936.1 CM039045.1 99.61 True local misassembly 37382480 37549706 37622923 37790165 NC_060936.1 CM039045.1 99.67 True local misassembly 37549704 37565571 37793571 37809097 NC_060936.1 CM039045.1 97.62 True relocation, inconsistency = -7951 37565557 37632278 37817034 37883754 NC_060936.1 CM039045.1 99.76 True local misassembly 37632552 37698833 37885391 37952521 NC_060936.1 CM039045.1 98.52 True local misassembly 37700205 39845374 37952522 40098496 NC_060936.1 CM039045.1 99.83 True indel: indel (> 5bp) 39845560 41360577 40098721 41613866 NC_060936.1 CM039045.1 99.84 True indel: stretch of mismatches 41360578 43483594 41613867 43736230 NC_060936.1 CM039045.1 99.83 True local misassembly 43484674 47594104 43736231 47838875 NC_060936.1 CM039045.1 99.68 True local misassembly 47595352 48455881 47840178 48695433 NC_060936.1 CM039045.1 99.1 True indel: indel (<= 5bp) 48455947 49751841 48695498 49990220 NC_060936.1 CM039045.1 99.6 True local misassembly 49752143 50912151 49990608 51150868 NC_060936.1 CM039045.1 99.85 True indel: indel (> 5bp) 50912307 52859522 51151073 53096960 NC_060936.1 CM039045.1 99.73 True indel: indel (> 5bp) 52859650 55300943 53097071 55538699 NC_060936.1 CM039045.1 99.8 True translocation 78899322 78902764 55542174 55538732 NC_060930.1 CM039045.1 98.2 True indel: indel (<= 5bp) 78897941 78899321 55543560 55542180 NC_060930.1 CM039045.1 98.12 True indel: indel (> 5bp) 78897279 78897940 55544248 55543587 NC_060930.1 CM039045.1 97.89 True local misassembly 78895277 78896986 55545958 55544249 NC_060930.1 CM039045.1 98.69 True translocation 55299991 58306233 55545959 58551592 NC_060936.1 CM039045.1 99.88 True relocation, inconsistency = 8489 58314723 60993117 58551593 61219865 NC_060936.1 CM039045.1 99.43 True indel: indel (> 5bp) 60993183 68974441 61219949 69196904 NC_060936.1 CM039045.1 99.77 True indel: indel (> 5bp) 68974620 70180528 69197076 70403361 NC_060936.1 CM039045.1 99.63 True local misassembly 70183210 70924773 70403362 71144897 NC_060936.1 CM039045.1 99.84 True relocation, inconsistency = -13471 70924791 73165042 71158386 73396261 NC_060936.1 CM039045.1 99.72 True local misassembly 73164861 78272353 73398116 78510182 NC_060936.1 CM039045.1 99.68 True local misassembly 78272596 79747661 78510301 79985999 NC_060936.1 CM039045.1 99.86 True relocation, inconsistency = -7876 79739786 81621673 79986000 81867847 NC_060936.1 CM039045.1 99.82 True indel: indel (> 5bp) 81621796 81906970 81867925 82153385 NC_060936.1 CM039045.1 99.67 True indel: indel (> 5bp) 81907189 85922691 82153680 86166231 NC_060936.1 CM039045.1 99.58 True indel: indel (> 5bp) 85922718 87467168 86166273 87717106 NC_060936.1 CM039045.1 99.31 True indel: indel (> 5bp) 87467203 90810917 87717163 91060801 NC_060936.1 CM039045.1 99.86 True local misassembly 90809211 93433832 91060802 93685275 NC_060936.1 CM039045.1 99.84 True local misassembly 93432023 93433816 93685276 93687067 NC_060936.1 CM039045.1 99.78 True local misassembly 93432007 95129509 93687068 95383434 NC_060936.1 CM039045.1 99.73 True local misassembly 95129779 95373924 95383819 95627949 NC_060936.1 CM039045.1 99.73 True indel: indel (> 5bp) 95374043 96638744 95628088 96892970 NC_060936.1 CM039045.1 99.71 True indel: indel (<= 5bp) 96638845 99373638 96893067 99628316 NC_060936.1 CM039045.1 99.76 True relocation, inconsistency = -8819 99373638 99859236 99637135 100122688 NC_060936.1 CM039045.1 99.92 True local misassembly 99859239 103467752 100126134 103734779 NC_060936.1 CM039045.1 99.81 True local misassembly 103467997 104997468 103734860 105264888 NC_060936.1 CM039045.1 99.78 True local misassembly 104998058 109417935 105265447 109688445 NC_060936.1 CM039045.1 99.65 True indel: indel (<= 5bp) 109418114 109609537 109688622 109880101 NC_060936.1 CM039045.1 99.79 True local misassembly 109610397 111519043 109880670 111788590 NC_060936.1 CM039045.1 99.79 True local misassembly 111519133 113015474 111792310 113288757 NC_060936.1 CM039045.1 99.84 True indel: indel (> 5bp) 113015630 113950319 113288947 114223462 NC_060936.1 CM039045.1 99.87 True indel: indel (> 5bp) 113950395 114258708 114223573 114532687 NC_060936.1 CM039045.1 99.43 True indel: indel (> 5bp) 114258714 114612103 114532727 114886082 NC_060936.1 CM039045.1 99.82 True local misassembly 114612426 114852507 114886263 115126175 NC_060936.1 CM039045.1 99.67 True local misassembly 114852688 115353187 115126594 115627138 NC_060936.1 CM039045.1 99.78 True indel: indel (> 5bp) 115353352 115677829 115627296 115951648 NC_060936.1 CM039045.1 99.78 True local misassembly 115677924 115779791 115951649 116053558 NC_060936.1 CM039045.1 99.57 True local misassembly 115780741 117593524 116054365 117861504 NC_060936.1 CM039045.1 99.42 True local misassembly 117593726 118120433 117861602 118388337 NC_060936.1 CM039045.1 99.79 True local misassembly 118120476 119907040 118388481 120176057 NC_060936.1 CM039045.1 99.75 True local misassembly 119907167 120841694 120176395 121111132 NC_060936.1 CM039045.1 99.76 True local misassembly 120841578 123449526 121111133 123715778 NC_060936.1 CM039045.1 99.64 True local misassembly 123451991 125418103 123718330 125684145 NC_060936.1 CM039045.1 99.45 True local misassembly 125418715 127505062 125684670 127758348 NC_060936.1 CM039045.1 98.33 True local misassembly 127506004 127515289 127758840 127767844 NC_060936.1 CM039045.1 95.04 True local misassembly 127515575 127595074 127768010 127847057 NC_060936.1 CM039045.1 99.14 True local misassembly 127596035 127724961 127847152 127975604 NC_060936.1 CM039045.1 99.28 True indel: indel (> 5bp) 127725190 128112468 127975761 128363006 NC_060936.1 CM039045.1 99.82 True local misassembly 128115696 128738959 128365956 128989500 NC_060936.1 CM039045.1 99.76 True local misassembly 128739115 129861414 128989539 130109781 NC_060936.1 CM039045.1 99.44 True local misassembly 129863317 130820461 130111062 131080653 NC_060936.1 CM039045.1 97.74 True local misassembly 130821325 130881245 131081900 131141687 NC_060936.1 CM039045.1 99.45 True indel: indel (<= 5bp) 130881494 130882061 131141935 131142502 NC_060936.1 CM039045.1 98.42 True local misassembly 130883652 131434454 131143981 131691586 NC_060936.1 CM039045.1 99.05 True local misassembly 131434969 131620516 131693067 131877637 NC_060936.1 CM039045.1 98.19 True relocation, inconsistency = -9162 131619708 131620252 131885991 131886535 NC_060936.1 CM039045.1 99.82 True relocation, inconsistency = -12865 131620347 131622573 131899495 131901721 NC_060936.1 CM039045.1 99.42 True indel: indel (> 5bp) 131622742 131623569 131901857 131902684 NC_060936.1 CM039045.1 98.31 True local misassembly 131628360 131845602 131906718 132128163 NC_060936.1 CM039045.1 97.28 True indel: indel (> 5bp) 131845578 131961917 132128187 132244545 NC_060936.1 CM039045.1 99.79 True local misassembly 131964283 132206254 132245100 132483311 NC_060936.1 CM039045.1 98.38 True indel: indel (> 5bp) 132206260 132290961 132483324 132566652 NC_060936.1 CM039045.1 96.11 True local misassembly 132294156 132442936 132570642 132719836 NC_060936.1 CM039045.1 97.08 True local misassembly 132443243 132648089 132720057 132925061 NC_060936.1 CM039045.1 98.8 True local misassembly 132648482 132809557 132925341 133086479 NC_060936.1 CM039045.1 99.71 True local misassembly 132810092 133005272 133086706 133282711 NC_060936.1 CM039045.1 98.46 True local misassembly 133011332 133318973 133287530 133595000 NC_060936.1 CM039045.1 99.93 True CONTIG CM039045.1 133595000 misassembled 5293531 5307738 1 14168 NC_060945.1 CM039046.1 99.02 True local misassembly 5307987 5309287 14312 15612 NC_060945.1 CM039046.1 95.68 True indel: indel (<= 5bp) 5309419 5335762 15741 42149 NC_060945.1 CM039046.1 98.74 True indel: indel (> 5bp) 5335894 5352123 42265 58438 NC_060945.1 CM039046.1 99.0 True local misassembly 5352372 5353672 58582 59884 NC_060945.1 CM039046.1 95.46 True indel: indel (<= 5bp) 5353804 5380147 60015 86422 NC_060945.1 CM039046.1 98.73 True indel: indel (> 5bp) 5380279 5396537 86538 102780 NC_060945.1 CM039046.1 99.39 True relocation, inconsistency = -1553888 3842869 3917724 103000 177979 NC_060945.1 CM039046.1 98.78 True translocation 2767328 3306242 177980 716141 NC_060938.1 CM039046.1 99.6 True fake: not a misassembly (possible transposable element) 9835014 9835628 721861 722475 NC_060937.1 CM039046.1 99.19 True fake: not a misassembly (possible transposable element) 3319177 3435647 722628 839058 NC_060938.1 CM039046.1 99.67 True translocation 6537826 6947806 839059 1248869 NC_060946.1 CM039046.1 98.83 True relocation, inconsistency = -210427 6737380 6797725 1248870 1309189 NC_060946.1 CM039046.1 98.35 True relocation, inconsistency = -60472 6737254 6947752 1309190 1519717 NC_060946.1 CM039046.1 98.39 True relocation, inconsistency = 32990 6980743 7119832 1519718 1658847 NC_060946.1 CM039046.1 98.27 True relocation, inconsistency = -7176 7112657 7142907 1658848 1689109 NC_060946.1 CM039046.1 99.33 True local misassembly 7144282 7205114 1689110 1750441 NC_060946.1 CM039046.1 97.97 True local misassembly 7199317 7200204 1750442 1751329 NC_060946.1 CM039046.1 96.41 True local misassembly 7208530 7209075 1752998 1753543 NC_060946.1 CM039046.1 99.63 True local misassembly 7210260 7211075 1754528 1755343 NC_060946.1 CM039046.1 97.06 True relocation, inconsistency = 30071 7241816 7243759 1756013 1757986 NC_060946.1 CM039046.1 95.39 True relocation, inconsistency = -38599 7205161 7252789 1757987 1805388 NC_060946.1 CM039046.1 98.71 True relocation, inconsistency = -11957 7240874 7241535 1805430 1806091 NC_060946.1 CM039046.1 99.85 True local misassembly 7242036 7243192 1806637 1807793 NC_060946.1 CM039046.1 99.74 True local misassembly 7247949 7248840 1808851 1809742 NC_060946.1 CM039046.1 97.09 True relocation, inconsistency = -8905 7242344 7243331 1812151 1813138 NC_060946.1 CM039046.1 99.19 True fake: not a misassembly (possible transposable element) 7209556 7213924 1813490 1817878 NC_060946.1 CM039046.1 96.2 True fake: not a misassembly (possible transposable element) 7247942 7249218 1818651 1819927 NC_060946.1 CM039046.1 98.59 True relocation, inconsistency = -33562 7222630 7339228 1826901 1943354 NC_060946.1 CM039046.1 99.33 True relocation, inconsistency = -7063 7332166 7335682 1943355 1946881 NC_060946.1 CM039046.1 99.41 True local misassembly 7332154 7342568 1946882 1957326 NC_060946.1 CM039046.1 98.58 True relocation, inconsistency = 35894 7378463 7567575 1957327 2146282 NC_060946.1 CM039046.1 99.37 True indel: indel (<= 5bp) 7567734 7573742 2146438 2152446 NC_060946.1 CM039046.1 99.93 True indel: indel (<= 5bp) 7573901 7859476 2152602 2438082 NC_060946.1 CM039046.1 99.8 True local misassembly 7864034 8206729 2438083 2781488 NC_060946.1 CM039046.1 99.46 True local misassembly 8206728 8577562 2782534 3153206 NC_060946.1 CM039046.1 99.67 True relocation, inconsistency = 44069 8671355 8695996 3202930 3227566 NC_060946.1 CM039046.1 99.04 True local misassembly 8701612 8713753 3233180 3245319 NC_060946.1 CM039046.1 97.97 True translocation, scaffold gap is present 3937590 3950695 3245353 3258465 NC_060939.1 CM039046.1 99.32 True translocation 3842299 3915442 3258466 3331693 NC_060945.1 CM039046.1 98.76 True translocation 5712038 6007757 3331809 3628092 NC_060946.1 CM039046.1 99.81 True relocation, inconsistency = -50530 5957228 5982477 3628093 3653362 NC_060946.1 CM039046.1 99.52 True relocation, inconsistency = -25265 5957213 6605514 3653363 4301776 NC_060946.1 CM039046.1 99.65 True translocation 3503295 3514944 4301777 4313423 NC_060938.1 CM039046.1 97.93 True translocation 6617308 6730899 4313424 4427607 NC_060946.1 CM039046.1 97.3 True relocation, inconsistency = 270811 7005063 7009046 4430960 4434941 NC_060946.1 CM039046.1 95.79 True local misassembly 7009712 7011503 4435608 4437396 NC_060946.1 CM039046.1 96.49 True indel: stretch of mismatches 7011620 7016347 4437513 4442218 NC_060946.1 CM039046.1 95.21 True local misassembly 7017939 7023702 4443801 4449553 NC_060946.1 CM039046.1 95.64 True relocation, inconsistency = 24184 7048368 7050256 4450035 4451914 NC_060946.1 CM039046.1 96.51 True local misassembly 7050801 7051794 4452464 4453457 NC_060946.1 CM039046.1 97.48 True indel: indel (<= 5bp) 7051795 7052400 4453459 4454064 NC_060946.1 CM039046.1 96.86 True indel: indel (> 5bp) 7052881 7055125 4454517 4456760 NC_060946.1 CM039046.1 96.36 True relocation, inconsistency = -24220 7031097 7033324 4456952 4459180 NC_060946.1 CM039046.1 95.93 True local misassembly 7033869 7035743 4459730 4461602 NC_060946.1 CM039046.1 96.75 True indel: stretch of mismatches 7035935 7037976 4461794 4463833 NC_060946.1 CM039046.1 96.58 True indel: indel (<= 5bp) 7038357 7040395 4464217 4466256 NC_060946.1 CM039046.1 96.43 True relocation, inconsistency = 24248 7065427 7066370 4467040 4467983 NC_060946.1 CM039046.1 97.78 True indel: indel (<= 5bp) 7066371 7066976 4467985 4468590 NC_060946.1 CM039046.1 96.2 True indel: indel (> 5bp) 7067455 7069701 4469041 4471279 NC_060946.1 CM039046.1 96.09 True relocation, inconsistency = -24281 7045612 7047837 4471471 4473695 NC_060946.1 CM039046.1 95.83 True local misassembly 7048382 7050256 4474237 4476110 NC_060946.1 CM039046.1 96.7 True local misassembly 7050801 7051794 4476660 4477653 NC_060946.1 CM039046.1 97.59 True indel: indel (<= 5bp) 7051795 7052400 4477655 4478260 NC_060946.1 CM039046.1 96.37 True indel: indel (> 5bp) 7052881 7054936 4478713 4480764 NC_060946.1 CM039046.1 96.4 True indel: indel (<= 5bp) 7055321 7057544 4481152 4483379 NC_060946.1 CM039046.1 95.97 True relocation, inconsistency = 24321 7082057 7084284 4483571 4485793 NC_060946.1 CM039046.1 96.28 True indel: stretch of mismatches 7084476 7089093 4485985 4490572 NC_060946.1 CM039046.1 95.47 True fake: not a misassembly (possible transposable element) 7065512 7066370 4491334 4492192 NC_060946.1 CM039046.1 96.97 True fake: not a misassembly (possible transposable element) 7090691 7091218 4492193 4492720 NC_060946.1 CM039046.1 97.04 True local misassembly 7092219 7093507 4493762 4495045 NC_060946.1 CM039046.1 95.27 True indel: indel (<= 5bp) 7093673 7094398 4495209 4495934 NC_060946.1 CM039046.1 97.25 True indel: indel (<= 5bp) 7094573 7095484 4496104 4497015 NC_060946.1 CM039046.1 97.37 True local misassembly 7096987 7098072 4498585 4499670 NC_060946.1 CM039046.1 97.51 True local misassembly 7100844 7101495 4499832 4500463 NC_060946.1 CM039046.1 95.4 True relocation, inconsistency = 13745 7115241 7115835 4500464 4501058 NC_060946.1 CM039046.1 98.26 True relocation, inconsistency = 47670 7176249 7176919 4513802 4514472 NC_060946.1 CM039046.1 97.17 True local misassembly 7179867 7180374 4517475 4517982 NC_060946.1 CM039046.1 97.83 True relocation, inconsistency = -36428 7233579 7234185 4607615 4608221 NC_060946.1 CM039046.1 98.02 True relocation, inconsistency = -65920 7233579 7234185 4673535 4674141 NC_060946.1 CM039046.1 98.02 True fake: not a misassembly (possible transposable element) 7299405 7300195 4725718 4726508 NC_060946.1 CM039046.1 97.6 True fake: not a misassembly (possible transposable element) 7299311 7299820 4732984 4733493 NC_060946.1 CM039046.1 98.43 True relocation, inconsistency = 62485 7370169 7370743 4741357 4741931 NC_060946.1 CM039046.1 98.61 True indel: indel (<= 5bp) 7370744 7371351 4741937 4742544 NC_060946.1 CM039046.1 98.52 True relocation, inconsistency = 39327 7416079 7416606 4747945 4748472 NC_060946.1 CM039046.1 98.3 True local misassembly 7428023 7428558 4757200 4757735 NC_060946.1 CM039046.1 98.32 True local misassembly 7433662 7434222 4762622 4763182 NC_060946.1 CM039046.1 97.5 True fake: not a misassembly (possible transposable element) 7315900 7316441 4765790 4766331 NC_060946.1 CM039046.1 98.71 True fake: not a misassembly (possible transposable element) 7440633 7441501 4767014 4767882 NC_060946.1 CM039046.1 97.7 True local misassembly 7444072 7444795 4770632 4771355 NC_060946.1 CM039046.1 98.07 True fake: not a misassembly (possible transposable element) 7322797 7323425 4773482 4774110 NC_060946.1 CM039046.1 97.62 True fake: not a misassembly (possible transposable element) 7444851 7445441 4777561 4778151 NC_060946.1 CM039046.1 95.64 True indel: indel (> 5bp) 7445472 7584680 4778166 4917605 NC_060946.1 CM039046.1 98.63 True translocation 95779800 95781444 4917606 4919250 NC_060927.1 CM039046.1 96.63 True local misassembly 95781736 95783460 4919251 4920975 NC_060927.1 CM039046.1 97.04 True indel: indel (> 5bp) 95783461 95785177 4921000 4922716 NC_060927.1 CM039046.1 96.45 True indel: indel (<= 5bp) 95785324 95785830 4922860 4923366 NC_060927.1 CM039046.1 95.66 True indel: indel (> 5bp) 95786050 95788039 4923575 4925564 NC_060927.1 CM039046.1 96.73 True local misassembly 95788331 95790055 4925565 4927289 NC_060927.1 CM039046.1 97.1 True indel: indel (> 5bp) 95790056 95791776 4927310 4929030 NC_060927.1 CM039046.1 96.28 True indel: indel (<= 5bp) 95791923 95792514 4929174 4929765 NC_060927.1 CM039046.1 96.28 True indel: indel (> 5bp) 95792657 95796275 4929890 4933508 NC_060927.1 CM039046.1 97.1 True indel: indel (> 5bp) 95796370 95798090 4933625 4935345 NC_060927.1 CM039046.1 96.4 True indel: indel (<= 5bp) 95798237 95798839 4935489 4936091 NC_060927.1 CM039046.1 96.68 True indel: indel (> 5bp) 95798963 95805145 4936205 4942401 NC_060927.1 CM039046.1 96.58 True indel: indel (> 5bp) 95805346 95811451 4942592 4948711 NC_060927.1 CM039046.1 96.44 True translocation 7559573 7584680 4949025 4974428 NC_060946.1 CM039046.1 98.75 True translocation 5571165 5767890 5170997 4974429 NC_060938.1 CM039046.1 97.34 True local misassembly 5568571 5569279 5173506 5172798 NC_060938.1 CM039046.1 98.59 True local misassembly 5566952 5567720 5175140 5174372 NC_060938.1 CM039046.1 98.18 True local misassembly 5564311 5564868 5177710 5177153 NC_060938.1 CM039046.1 97.13 True indel: indel (> 5bp) 5563577 5564280 5178414 5177711 NC_060938.1 CM039046.1 98.15 True indel: indel (> 5bp) 5562437 5563079 5179491 5178849 NC_060938.1 CM039046.1 97.82 True indel: indel (> 5bp) 5561823 5562436 5180125 5179512 NC_060938.1 CM039046.1 98.37 True local misassembly 5557860 5558359 5184174 5183675 NC_060938.1 CM039046.1 97.8 True local misassembly 5537247 5554532 5204330 5187026 NC_060938.1 CM039046.1 95.71 True translocation 5857444 5858255 5205722 5206533 NC_060945.1 CM039046.1 97.54 True indel: indel (<= 5bp) 5858261 5859400 5206534 5207673 NC_060945.1 CM039046.1 99.04 True local misassembly 5859806 5860632 5207969 5208795 NC_060945.1 CM039046.1 97.94 True translocation 5531122 5531823 5209947 5209246 NC_060938.1 CM039046.1 98.29 True local misassembly 5528838 5529500 5212111 5211449 NC_060938.1 CM039046.1 98.04 True local misassembly 5525774 5526362 5215405 5214817 NC_060938.1 CM039046.1 99.15 True indel: indel (> 5bp) 5524620 5525437 5216577 5215760 NC_060938.1 CM039046.1 98.66 True local misassembly 5523318 5523827 5217879 5217370 NC_060938.1 CM039046.1 98.63 True local misassembly 5520630 5521546 5220765 5219849 NC_060938.1 CM039046.1 98.47 True local misassembly 5519302 5519948 5222105 5221459 NC_060938.1 CM039046.1 99.23 True indel: indel (> 5bp) 5518112 5519301 5223301 5222112 NC_060938.1 CM039046.1 98.91 True local misassembly 5516111 5516953 5225187 5224345 NC_060938.1 CM039046.1 98.1 True local misassembly 5514109 5515187 5227215 5226137 NC_060938.1 CM039046.1 98.33 True local misassembly 5512298 5512855 5229219 5228662 NC_060938.1 CM039046.1 98.21 True indel: indel (> 5bp) 5511393 5512011 5230134 5229516 NC_060938.1 CM039046.1 97.58 True indel: indel (> 5bp) 5510132 5511392 5231415 5230155 NC_060938.1 CM039046.1 97.7 True local misassembly 5509483 5510074 5232179 5231588 NC_060938.1 CM039046.1 98.82 True indel: indel (> 5bp) 5508059 5509003 5233568 5232624 NC_060938.1 CM039046.1 98.31 True local misassembly 5506394 5507152 5235258 5234500 NC_060938.1 CM039046.1 98.42 True local misassembly 5503780 5504289 5238655 5238146 NC_060938.1 CM039046.1 99.61 True indel: indel (> 5bp) 5502339 5503696 5240071 5238714 NC_060938.1 CM039046.1 98.6 True local misassembly 5496553 5497216 5245978 5245315 NC_060938.1 CM039046.1 99.1 True indel: indel (> 5bp) 5495043 5496112 5247473 5246404 NC_060938.1 CM039046.1 98.97 True local misassembly 5491586 5492372 5251623 5250837 NC_060938.1 CM039046.1 98.22 True local misassembly 5490019 5490816 5253150 5252353 NC_060938.1 CM039046.1 98.12 True indel: indel (<= 5bp) 5489382 5490013 5253782 5253151 NC_060938.1 CM039046.1 98.1 True local misassembly 5488031 5488572 5255198 5254657 NC_060938.1 CM039046.1 98.34 True local misassembly 5487053 5487559 5256206 5255700 NC_060938.1 CM039046.1 99.01 True local misassembly 5486244 5487052 5258807 5257999 NC_060938.1 CM039046.1 97.9 True local misassembly 5483282 5483911 5261492 5260863 NC_060938.1 CM039046.1 97.94 True local misassembly 5481835 5482660 5262946 5262121 NC_060938.1 CM039046.1 98.67 True local misassembly 5480285 5481279 5264351 5263357 NC_060938.1 CM039046.1 97.99 True local misassembly 5477017 5477647 5267643 5267013 NC_060938.1 CM039046.1 98.1 True local misassembly 5474682 5475230 5270094 5269546 NC_060938.1 CM039046.1 98.72 True translocation 128700522 128701347 5287197 5286372 NC_060925.1 CM039046.1 96.97 True local misassembly 128696485 128697074 5291541 5290957 NC_060925.1 CM039046.1 96.61 True local misassembly 128693395 128694028 5292931 5292298 NC_060925.1 CM039046.1 96.85 True local misassembly 128690837 128691390 5295524 5294971 NC_060925.1 CM039046.1 97.11 True local misassembly 128687958 128688675 5298332 5297615 NC_060925.1 CM039046.1 97.35 True local misassembly 128686021 128686622 5300299 5299698 NC_060925.1 CM039046.1 97.18 True local misassembly 128684163 128685058 5302142 5301247 NC_060925.1 CM039046.1 97.88 True local misassembly 128682394 128682914 5304119 5303599 NC_060925.1 CM039046.1 96.55 True indel: indel (> 5bp) 128681574 128682089 5304969 5304454 NC_060925.1 CM039046.1 95.54 True indel: indel (> 5bp) 128680714 128681240 5305774 5305248 NC_060925.1 CM039046.1 97.53 True local misassembly 128678552 128679108 5307791 5307235 NC_060925.1 CM039046.1 97.31 True translocation 5952217 5954937 5311928 5314588 NC_060945.1 CM039046.1 95.04 True indel: indel (> 5bp) 5955508 5957637 5315074 5317173 NC_060945.1 CM039046.1 95.0 True translocation 128660127 128660838 5318751 5318040 NC_060925.1 CM039046.1 97.47 True local misassembly 128652197 128653477 5326813 5325533 NC_060925.1 CM039046.1 97.11 True local misassembly 128648098 128648936 5330679 5329841 NC_060925.1 CM039046.1 98.45 True translocation 5975421 5976343 5333940 5334862 NC_060945.1 CM039046.1 97.29 True indel: indel (> 5bp) 5976706 5977736 5335211 5336241 NC_060945.1 CM039046.1 97.48 True local misassembly 5978859 5979452 5337344 5337937 NC_060945.1 CM039046.1 96.97 True local misassembly 5980934 5981748 5339533 5340347 NC_060945.1 CM039046.1 97.55 True indel: indel (<= 5bp) 5982164 5983506 5340758 5342100 NC_060945.1 CM039046.1 96.65 True local misassembly 5984595 5985096 5343073 5343574 NC_060945.1 CM039046.1 98.61 True indel: indel (> 5bp) 5985097 5985667 5343590 5344160 NC_060945.1 CM039046.1 97.02 True indel: indel (<= 5bp) 5985669 5986547 5344161 5345039 NC_060945.1 CM039046.1 96.47 True local misassembly 5988583 5989160 5346897 5347474 NC_060945.1 CM039046.1 97.4 True local misassembly 5990057 5990583 5348416 5348942 NC_060945.1 CM039046.1 97.15 True local misassembly 5991103 5991749 5349582 5350228 NC_060945.1 CM039046.1 96.6 True indel: indel (> 5bp) 5992196 5993511 5350660 5351975 NC_060945.1 CM039046.1 97.57 True translocation 128625841 128626872 5355814 5354783 NC_060925.1 CM039046.1 96.61 True local misassembly 128623244 128624054 5358436 5357626 NC_060925.1 CM039046.1 96.55 True indel: indel (> 5bp) 128622340 128623018 5359320 5358642 NC_060925.1 CM039046.1 96.91 True local misassembly 128617999 128618971 5363474 5362502 NC_060925.1 CM039046.1 97.12 True indel: indel (> 5bp) 128616605 128617750 5364909 5363764 NC_060925.1 CM039046.1 96.95 True local misassembly 128615600 128616408 5366019 5365211 NC_060925.1 CM039046.1 96.79 True indel: indel (<= 5bp) 128614781 128615312 5366837 5366306 NC_060925.1 CM039046.1 98.31 True indel: indel (> 5bp) 128612896 128614765 5368707 5366838 NC_060925.1 CM039046.1 97.65 True translocation 6015887 6035332 5368715 5388062 NC_060945.1 CM039046.1 95.86 True indel: stretch of mismatches 6035379 6042302 5388109 5394895 NC_060945.1 CM039046.1 95.62 True local misassembly 6046936 6047777 5399540 5400379 NC_060945.1 CM039046.1 97.51 True translocation 128554533 128555054 5401044 5400522 NC_060925.1 CM039046.1 98.28 True translocation 5400462 5401289 5401057 5401882 NC_060938.1 CM039046.1 97.58 True indel: stretch of mismatches 5401313 5404458 5401906 5405051 NC_060938.1 CM039046.1 97.2 True inversion 5393426 5398341 5410444 5405529 NC_060938.1 CM039046.1 97.74 True local misassembly 5391165 5392709 5412299 5410755 NC_060938.1 CM039046.1 98.06 True indel: indel (<= 5bp) 5367058 5391027 5436379 5412439 NC_060938.1 CM039046.1 97.12 True local misassembly 5364005 5366753 5439638 5436889 NC_060938.1 CM039046.1 98.55 True local misassembly 5359942 5363415 5443906 5440433 NC_060938.1 CM039046.1 97.12 True local misassembly 5357131 5359543 5447127 5444715 NC_060938.1 CM039046.1 98.09 True local misassembly 5346986 5352930 5453698 5447833 NC_060938.1 CM039046.1 96.62 True local misassembly 5342081 5344599 5456217 5453699 NC_060938.1 CM039046.1 97.89 True local misassembly 5339552 5341441 5458813 5456924 NC_060938.1 CM039046.1 97.62 True indel: indel (> 5bp) 5338857 5339551 5459576 5458882 NC_060938.1 CM039046.1 97.7 True indel: indel (<= 5bp) 5337751 5338855 5460681 5459577 NC_060938.1 CM039046.1 96.47 True indel: indel (<= 5bp) 5335598 5337749 5462833 5460682 NC_060938.1 CM039046.1 97.49 True indel: indel (> 5bp) 5333028 5335597 5465444 5462875 NC_060938.1 CM039046.1 98.64 True local misassembly 5329161 5330183 5466997 5465975 NC_060938.1 CM039046.1 97.75 True local misassembly 5325354 5329024 5470668 5466998 NC_060938.1 CM039046.1 98.47 True indel: indel (> 5bp) 5323708 5325353 5472382 5470737 NC_060938.1 CM039046.1 97.87 True indel: indel (<= 5bp) 5314952 5323706 5481137 5472383 NC_060938.1 CM039046.1 98.25 True indel: indel (> 5bp) 5311903 5314923 5484158 5481138 NC_060938.1 CM039046.1 97.85 True indel: indel (<= 5bp) 5307598 5311902 5488464 5484160 NC_060938.1 CM039046.1 98.58 True indel: indel (<= 5bp) 5304546 5307596 5491515 5488465 NC_060938.1 CM039046.1 97.44 True local misassembly 5302882 5303824 5493586 5492644 NC_060938.1 CM039046.1 98.73 True local misassembly 5300684 5301818 5495725 5494591 NC_060938.1 CM039046.1 96.21 True indel: indel (<= 5bp) 5298641 5300682 5497767 5495726 NC_060938.1 CM039046.1 97.21 True indel: indel (<= 5bp) 5296350 5298637 5500055 5497768 NC_060938.1 CM039046.1 98.3 True indel: indel (> 5bp) 5294009 5296349 5502465 5500125 NC_060938.1 CM039046.1 98.68 True indel: indel (> 5bp) 5293414 5293925 5502977 5502466 NC_060938.1 CM039046.1 95.7 True indel: indel (<= 5bp) 5289580 5293413 5506812 5502979 NC_060938.1 CM039046.1 97.6 True indel: indel (<= 5bp) 5288842 5289578 5507549 5506813 NC_060938.1 CM039046.1 97.42 True indel: stretch of mismatches 5287836 5288598 5508555 5507793 NC_060938.1 CM039046.1 98.56 True indel: indel (<= 5bp) 5286752 5287834 5509638 5508556 NC_060938.1 CM039046.1 97.69 True local misassembly 5283685 5285522 5512705 5510868 NC_060938.1 CM039046.1 97.01 True indel: indel (<= 5bp) 5281630 5283684 5514761 5512707 NC_060938.1 CM039046.1 98.1 True translocation 6164869 6166663 5514832 5516626 NC_060945.1 CM039046.1 96.99 True indel: indel (<= 5bp) 6166664 6170175 5516628 5520139 NC_060945.1 CM039046.1 96.38 True local misassembly 6170780 6171557 5520746 5521523 NC_060945.1 CM039046.1 98.07 True local misassembly 6171764 6174300 5521524 5524060 NC_060945.1 CM039046.1 97.83 True indel: indel (<= 5bp) 6174302 6174807 5524061 5524566 NC_060945.1 CM039046.1 96.44 True indel: indel (<= 5bp) 6174970 6183510 5524726 5533272 NC_060945.1 CM039046.1 96.16 True local misassembly 6187374 6187968 5534202 5534796 NC_060945.1 CM039046.1 97.48 True indel: indel (<= 5bp) 6187969 6188786 5534798 5535615 NC_060945.1 CM039046.1 96.45 True indel: indel (<= 5bp) 6188788 6192067 5535616 5538895 NC_060945.1 CM039046.1 97.41 True indel: indel (> 5bp) 6192095 6193338 5538904 5540147 NC_060945.1 CM039046.1 95.74 True indel: indel (<= 5bp) 6193339 6194324 5540149 5541134 NC_060945.1 CM039046.1 97.46 True indel: indel (<= 5bp) 6194602 6195181 5541413 5541992 NC_060945.1 CM039046.1 96.72 True indel: indel (<= 5bp) 6195306 6205874 5542118 5552621 NC_060945.1 CM039046.1 96.43 True translocation 5247332 5262290 5567764 5552735 NC_060938.1 CM039046.1 97.18 True translocation 128406388 128410492 5572308 5568203 NC_060925.1 CM039046.1 96.81 True indel: stretch of mismatches 128404566 128406367 5574130 5572329 NC_060925.1 CM039046.1 97.89 True indel: indel (> 5bp) 128400898 128404565 5577866 5574199 NC_060925.1 CM039046.1 97.74 True local misassembly 128399995 128400506 5578635 5578124 NC_060925.1 CM039046.1 97.46 True indel: indel (<= 5bp) 128398693 128399993 5579936 5578636 NC_060925.1 CM039046.1 96.77 True local misassembly 128394764 128398108 5583866 5580519 NC_060925.1 CM039046.1 97.22 True translocation 5200081 5200881 5585229 5584429 NC_060938.1 CM039046.1 97.5 True indel: indel (> 5bp) 5198292 5199651 5587088 5585729 NC_060938.1 CM039046.1 97.72 True indel: indel (<= 5bp) 5196978 5198290 5588401 5587089 NC_060938.1 CM039046.1 96.88 True indel: indel (<= 5bp) 5194764 5196974 5590612 5588402 NC_060938.1 CM039046.1 97.42 True indel: indel (> 5bp) 5194242 5194763 5591162 5590641 NC_060938.1 CM039046.1 98.66 True local misassembly 5192705 5193545 5592498 5591658 NC_060938.1 CM039046.1 98.45 True local misassembly 5189448 5190550 5594545 5593443 NC_060938.1 CM039046.1 97.82 True local misassembly 5188684 5189243 5595105 5594546 NC_060938.1 CM039046.1 98.21 True local misassembly 5186314 5188095 5597472 5595691 NC_060938.1 CM039046.1 97.08 True indel: indel (<= 5bp) 5184233 5186312 5599552 5597473 NC_060938.1 CM039046.1 96.92 True indel: indel (<= 5bp) 5183125 5184231 5600659 5599553 NC_060938.1 CM039046.1 98.55 True local misassembly 5147057 5180286 5636773 5603573 NC_060938.1 CM039046.1 95.73 True local misassembly 5133782 5141448 5644358 5636847 NC_060938.1 CM039046.1 96.01 True translocation 128317845 128346774 5673609 5644359 NC_060925.1 CM039046.1 95.09 True indel: stretch of mismatches 128316625 128317778 5674829 5673676 NC_060925.1 CM039046.1 98.18 True local misassembly 128315066 128315989 5676387 5675464 NC_060925.1 CM039046.1 96.54 True indel: indel (<= 5bp) 128313697 128315064 5677755 5676388 NC_060925.1 CM039046.1 97.2 True translocation 5092978 5107567 5692488 5677756 NC_060938.1 CM039046.1 96.74 True translocation 128276138 128277197 5693548 5692489 NC_060925.1 CM039046.1 98.41 True indel: indel (<= 5bp) 128275401 128276137 5694286 5693550 NC_060925.1 CM039046.1 96.74 True indel: indel (<= 5bp) 128274488 128275019 5695196 5694665 NC_060925.1 CM039046.1 98.31 True indel: indel (> 5bp) 128273904 128274487 5695848 5695265 NC_060925.1 CM039046.1 98.12 True local misassembly 128273058 128273903 5696906 5696061 NC_060925.1 CM039046.1 97.75 True local misassembly 128270884 128273057 5699558 5697385 NC_060925.1 CM039046.1 97.38 True indel: indel (<= 5bp) 128269810 128270882 5700631 5699559 NC_060925.1 CM039046.1 98.04 True local misassembly 128268096 128269225 5701851 5700722 NC_060925.1 CM039046.1 95.22 True indel: indel (<= 5bp) 128267305 128268095 5702646 5701856 NC_060925.1 CM039046.1 95.83 True indel: indel (> 5bp) 128266179 128267235 5703703 5702647 NC_060925.1 CM039046.1 96.59 True local misassembly 128260625 128262856 5708603 5706372 NC_060925.1 CM039046.1 95.97 True indel: indel (<= 5bp) 128258840 128260622 5710386 5708604 NC_060925.1 CM039046.1 98.04 True local misassembly 128257376 128258688 5711710 5710398 NC_060925.1 CM039046.1 98.55 True translocation 5053953 5055744 5714243 5712452 NC_060938.1 CM039046.1 98.33 True local misassembly 5051578 5053670 5716754 5714662 NC_060938.1 CM039046.1 96.32 True indel: indel (<= 5bp) 5050375 5051143 5717955 5717187 NC_060938.1 CM039046.1 98.57 True local misassembly 5045786 5050070 5722953 5718669 NC_060938.1 CM039046.1 98.48 True indel: indel (<= 5bp) 5044471 5045784 5724267 5722954 NC_060938.1 CM039046.1 97.41 True indel: indel (<= 5bp) 5041584 5044469 5727153 5724268 NC_060938.1 CM039046.1 97.64 True indel: indel (<= 5bp) 5040867 5041583 5727871 5727155 NC_060938.1 CM039046.1 96.93 True indel: indel (<= 5bp) 5040132 5040864 5728604 5727872 NC_060938.1 CM039046.1 98.36 True indel: indel (> 5bp) 5039404 5040131 5729401 5728674 NC_060938.1 CM039046.1 97.8 True indel: indel (<= 5bp) 5037936 5039403 5730870 5729403 NC_060938.1 CM039046.1 97.41 True indel: indel (<= 5bp) 5035827 5037935 5732980 5730872 NC_060938.1 CM039046.1 97.34 True indel: indel (<= 5bp) 5035314 5035825 5733492 5732981 NC_060938.1 CM039046.1 98.24 True indel: indel (<= 5bp) 5033486 5035313 5735321 5733494 NC_060938.1 CM039046.1 98.41 True indel: indel (<= 5bp) 5031839 5033485 5736972 5735326 NC_060938.1 CM039046.1 95.93 True indel: indel (<= 5bp) 5030977 5031837 5737833 5736973 NC_060938.1 CM039046.1 96.4 True indel: indel (<= 5bp) 5030201 5030828 5738613 5737986 NC_060938.1 CM039046.1 97.13 True indel: indel (<= 5bp) 5029675 5030200 5739140 5738615 NC_060938.1 CM039046.1 97.53 True indel: indel (<= 5bp) 5028550 5029674 5740267 5739143 NC_060938.1 CM039046.1 97.96 True indel: indel (> 5bp) 5027359 5028481 5741390 5740268 NC_060938.1 CM039046.1 97.68 True indel: indel (<= 5bp) 5026824 5027358 5741927 5741393 NC_060938.1 CM039046.1 98.69 True local misassembly 5019330 5021708 5744306 5741928 NC_060938.1 CM039046.1 98.49 True indel: indel (> 5bp) 5018462 5019329 5745243 5744376 NC_060938.1 CM039046.1 98.04 True indel: indel (> 5bp) 5017848 5018454 5745850 5745244 NC_060938.1 CM039046.1 97.69 True indel: indel (<= 5bp) 5014952 5017845 5748744 5745851 NC_060938.1 CM039046.1 96.86 True translocation 128191511 128196849 5754439 5749101 NC_060925.1 CM039046.1 95.98 True translocation 6282718 6286433 5754440 5758156 NC_060945.1 CM039046.1 97.9 True indel: indel (<= 5bp) 6286596 6317692 5758318 5789487 NC_060945.1 CM039046.1 96.25 True translocation 4994122 5002335 5797702 5789488 NC_060938.1 CM039046.1 96.86 True translocation 6330757 6392532 5797703 5859617 NC_060945.1 CM039046.1 97.16 True local misassembly 6394559 6395097 5862446 5862984 NC_060945.1 CM039046.1 96.85 True local misassembly 6398194 6398717 5866818 5867341 NC_060945.1 CM039046.1 96.56 True translocation 4906156 4906980 5870475 5869651 NC_060938.1 CM039046.1 96.24 True indel: indel (> 5bp) 4905445 4906140 5871171 5870476 NC_060938.1 CM039046.1 98.13 True indel: indel (> 5bp) 4904050 4905225 5872551 5871376 NC_060938.1 CM039046.1 97.79 True local misassembly 4902037 4902553 5874509 5873993 NC_060938.1 CM039046.1 97.29 True local misassembly 4898613 4899399 5879412 5878626 NC_060938.1 CM039046.1 98.35 True indel: indel (<= 5bp) 4897603 4898612 5880427 5879418 NC_060938.1 CM039046.1 97.72 True translocation 6409736 6410304 5894176 5894744 NC_060945.1 CM039046.1 98.24 True local misassembly 6415999 6416678 5897550 5898229 NC_060945.1 CM039046.1 96.47 True local misassembly 6417400 6417988 5899017 5899605 NC_060945.1 CM039046.1 96.6 True indel: indel (> 5bp) 6418173 6418737 5899815 5900379 NC_060945.1 CM039046.1 95.93 True local misassembly 6420805 6421938 5902298 5903431 NC_060945.1 CM039046.1 96.21 True indel: indel (> 5bp) 6422353 6423074 5903827 5904548 NC_060945.1 CM039046.1 96.81 True indel: stretch of mismatches 6423169 6424131 5904643 5905605 NC_060945.1 CM039046.1 95.43 True translocation 4692401 4692928 5973370 5972843 NC_060938.1 CM039046.1 97.16 True indel: indel (> 5bp) 4691438 4692068 5974318 5973688 NC_060938.1 CM039046.1 99.21 True relocation, inconsistency = 11714 4677261 4677771 5976781 5976271 NC_060938.1 CM039046.1 97.85 True local misassembly 4675643 4676478 5978466 5977631 NC_060938.1 CM039046.1 98.8 True local misassembly 4535253 4672977 6117945 5981152 NC_060938.1 CM039046.1 95.82 True local misassembly 4476290 4532525 6176084 6119864 NC_060938.1 CM039046.1 98.31 True translocation 9217424 9369518 6176315 6327881 NC_060946.1 CM039046.1 98.43 True local misassembly 9369508 9395959 6329303 6356036 NC_060946.1 CM039046.1 98.27 True relocation, inconsistency = 143447 9540118 9556551 6372789 6356356 NC_060946.1 CM039046.1 99.34 True relocation, inconsistency = 10636 9463607 9529481 6438674 6372790 NC_060946.1 CM039046.1 98.99 True translocation 4142296 4144252 6440631 6438675 NC_060938.1 CM039046.1 97.84 True indel: indel (<= 5bp) 4141336 4142073 6441592 6440855 NC_060938.1 CM039046.1 98.51 True indel: indel (> 5bp) 4138595 4140960 6444402 6442037 NC_060938.1 CM039046.1 98.48 True indel: indel (<= 5bp) 4137924 4138594 6445074 6444404 NC_060938.1 CM039046.1 98.36 True indel: indel (> 5bp) 4134697 4137923 6448370 6445144 NC_060938.1 CM039046.1 97.37 True local misassembly 4133386 4134138 6449676 6448924 NC_060938.1 CM039046.1 96.81 True local misassembly 4131075 4132942 6452123 6450256 NC_060938.1 CM039046.1 97.86 True local misassembly 4130529 4131074 6453049 6452504 NC_060938.1 CM039046.1 97.99 True indel: indel (<= 5bp) 4129864 4130528 6453715 6453051 NC_060938.1 CM039046.1 97.74 True indel: indel (<= 5bp) 4128593 4129863 6454989 6453719 NC_060938.1 CM039046.1 98.27 True indel: indel (<= 5bp) 4127510 4128590 6456070 6454990 NC_060938.1 CM039046.1 98.15 True translocation 9402514 9430013 6484613 6457173 NC_060946.1 CM039046.1 98.24 True relocation, inconsistency = 133307 9563321 9566956 6484614 6488249 NC_060946.1 CM039046.1 99.32 True local misassembly 9566957 9572697 6490980 6496720 NC_060946.1 CM039046.1 99.34 True local misassembly 9572698 9576386 6497470 6501158 NC_060946.1 CM039046.1 99.16 True local misassembly 9576592 9578899 6501159 6503466 NC_060946.1 CM039046.1 99.61 True local misassembly 9578900 9581470 6504283 6506853 NC_060946.1 CM039046.1 99.3 True local misassembly 9581471 9587547 6507127 6513203 NC_060946.1 CM039046.1 99.23 True indel: indel (> 5bp) 9587548 9597265 6513213 6522930 NC_060946.1 CM039046.1 99.28 True indel: indel (<= 5bp) 9597267 9600850 6522931 6526514 NC_060946.1 CM039046.1 99.47 True indel: indel (> 5bp) 9600863 9611958 6526515 6537610 NC_060946.1 CM039046.1 99.45 True local misassembly 9612163 9618803 6537611 6544251 NC_060946.1 CM039046.1 99.2 True indel: indel (> 5bp) 9618873 9620158 6544252 6545537 NC_060946.1 CM039046.1 99.61 True indel: indel (<= 5bp) 9620160 9633569 6545538 6558947 NC_060946.1 CM039046.1 99.25 True indel: stretch of mismatches 9634066 9638080 6559444 6563458 NC_060946.1 CM039046.1 99.35 True local misassembly 9638218 9646598 6563459 6571839 NC_060946.1 CM039046.1 99.31 True local misassembly 9645495 9661034 6572920 6588459 NC_060946.1 CM039046.1 99.43 True indel: indel (> 5bp) 9661035 9663249 6588529 6590743 NC_060946.1 CM039046.1 99.46 True indel: indel (> 5bp) 9663318 9674543 6590744 6601969 NC_060946.1 CM039046.1 99.45 True indel: indel (> 5bp) 9674544 9679084 6601981 6606521 NC_060946.1 CM039046.1 99.43 True indel: indel (<= 5bp) 9679085 9680626 6606523 6608064 NC_060946.1 CM039046.1 99.09 True indel: indel (<= 5bp) 9680628 9685756 6608065 6613193 NC_060946.1 CM039046.1 99.16 True local misassembly 9692110 9692609 6616284 6616783 NC_060946.1 CM039046.1 99.4 True local misassembly 9694455 9695099 6618460 6619104 NC_060946.1 CM039046.1 99.84 True local misassembly 9695615 9696279 6623606 6624270 NC_060946.1 CM039046.1 99.55 True indel: indel (<= 5bp) 9696280 9697446 6624272 6625438 NC_060946.1 CM039046.1 99.31 True indel: indel (> 5bp) 9697447 9698585 6625469 6626607 NC_060946.1 CM039046.1 99.82 True translocation 128021130 128021663 6639254 6638721 NC_060925.1 CM039046.1 97.75 True indel: indel (<= 5bp) 128020240 128021126 6640141 6639255 NC_060925.1 CM039046.1 98.31 True local misassembly 128018202 128019160 6642209 6641251 NC_060925.1 CM039046.1 97.91 True indel: indel (> 5bp) 128017661 128018186 6642735 6642210 NC_060925.1 CM039046.1 98.48 True local misassembly 128016198 128016844 6644802 6644156 NC_060925.1 CM039046.1 98.61 True indel: indel (<= 5bp) 128015115 128015714 6645880 6645281 NC_060925.1 CM039046.1 98.0 True local misassembly 128014360 128014974 6646495 6645881 NC_060925.1 CM039046.1 97.89 True indel: indel (> 5bp) 128013737 128014359 6647128 6646506 NC_060925.1 CM039046.1 99.04 True local misassembly 127987918 128011882 6673014 6649043 NC_060925.1 CM039046.1 97.73 True indel: indel (<= 5bp) 127940623 127987769 6720377 6673166 NC_060925.1 CM039046.1 97.89 True indel: indel (<= 5bp) 127928636 127940518 6732415 6720483 NC_060925.1 CM039046.1 97.34 True local misassembly 127887059 127927816 6773998 6733130 NC_060925.1 CM039046.1 97.87 True local misassembly 127884831 127885746 6775146 6774231 NC_060925.1 CM039046.1 99.02 True indel: indel (<= 5bp) 127883779 127884830 6776200 6775149 NC_060925.1 CM039046.1 98.48 True indel: indel (<= 5bp) 127882129 127883778 6777851 6776202 NC_060925.1 CM039046.1 99.03 True relocation, inconsistency = 7567 127873591 127874199 6778822 6778214 NC_060925.1 CM039046.1 99.01 True indel: indel (<= 5bp) 127872008 127873590 6780406 6778824 NC_060925.1 CM039046.1 98.36 True indel: indel (> 5bp) 127869616 127871998 6782789 6780407 NC_060925.1 CM039046.1 98.87 True indel: indel (<= 5bp) 127868048 127869614 6784356 6782790 NC_060925.1 CM039046.1 98.79 True indel: indel (> 5bp) 127865647 127868047 6786783 6784383 NC_060925.1 CM039046.1 98.83 True indel: indel (<= 5bp) 127863738 127865645 6788691 6786784 NC_060925.1 CM039046.1 98.38 True indel: indel (> 5bp) 127859493 127863731 6792930 6788692 NC_060925.1 CM039046.1 98.56 True indel: indel (> 5bp) 127857504 127859226 6794891 6793169 NC_060925.1 CM039046.1 98.96 True indel: indel (<= 5bp) 127855317 127857503 6797081 6794895 NC_060925.1 CM039046.1 98.86 True indel: indel (<= 5bp) 127854445 127855315 6797952 6797082 NC_060925.1 CM039046.1 99.54 True indel: indel (> 5bp) 127853714 127854340 6798705 6798079 NC_060925.1 CM039046.1 99.04 True indel: indel (<= 5bp) 127852640 127853402 6799781 6799019 NC_060925.1 CM039046.1 99.08 True indel: indel (<= 5bp) 127851924 127852638 6800496 6799782 NC_060925.1 CM039046.1 99.58 True indel: indel (<= 5bp) 127851247 127851922 6801172 6800497 NC_060925.1 CM039046.1 98.82 True indel: indel (> 5bp) 127847391 127851246 6805048 6801193 NC_060925.1 CM039046.1 98.96 True indel: indel (> 5bp) 127845383 127847006 6807046 6805423 NC_060925.1 CM039046.1 98.65 True indel: indel (<= 5bp) 127844747 127845380 6807680 6807047 NC_060925.1 CM039046.1 99.53 True indel: indel (<= 5bp) 127842905 127844745 6809521 6807681 NC_060925.1 CM039046.1 98.42 True indel: indel (<= 5bp) 127841750 127842893 6810674 6809531 NC_060925.1 CM039046.1 98.78 True indel: stretch of mismatches 127840345 127841534 6812079 6810890 NC_060925.1 CM039046.1 98.32 True indel: indel (<= 5bp) 127837748 127840205 6814679 6812222 NC_060925.1 CM039046.1 98.29 True local misassembly 127835330 127836184 6817111 6816257 NC_060925.1 CM039046.1 98.83 True indel: indel (> 5bp) 127834744 127835322 6817690 6817112 NC_060925.1 CM039046.1 99.14 True indel: indel (<= 5bp) 127833662 127834742 6818771 6817691 NC_060925.1 CM039046.1 98.06 True indel: indel (<= 5bp) 127832138 127833661 6820296 6818773 NC_060925.1 CM039046.1 98.75 True indel: indel (<= 5bp) 127831296 127832137 6821139 6820298 NC_060925.1 CM039046.1 98.22 True indel: indel (> 5bp) 127828933 127831295 6823508 6821146 NC_060925.1 CM039046.1 98.31 True translocation 1817553 1830012 6823719 6835599 NC_060939.1 CM039046.1 96.27 True translocation 9792338 9847876 6891402 6835600 NC_060946.1 CM039046.1 98.63 True relocation, inconsistency = 35558 9888048 9888652 6896016 6896620 NC_060946.1 CM039046.1 96.2 True indel: indel (<= 5bp) 9888653 9889315 6896622 6897284 NC_060946.1 CM039046.1 96.38 True local misassembly 9891333 9904253 6899300 6912272 NC_060946.1 CM039046.1 95.2 True indel: indel (<= 5bp) 9904627 10126186 6912647 7134220 NC_060946.1 CM039046.1 98.31 True relocation, inconsistency = 37676 10163863 10716858 7134221 7679452 NC_060946.1 CM039046.1 97.74 True local misassembly 10729078 10729700 7691986 7692608 NC_060946.1 CM039046.1 99.52 True local misassembly 10735543 10737556 7697479 7699497 NC_060946.1 CM039046.1 95.09 True local misassembly 10739966 10740486 7702781 7703301 NC_060946.1 CM039046.1 98.85 True local misassembly 10773836 10776510 7738793 7741486 NC_060946.1 CM039046.1 95.18 True relocation, inconsistency = 153459 10951449 10952592 7762966 7764074 NC_060946.1 CM039046.1 96.42 True local misassembly 10959910 10980584 7771576 7792328 NC_060946.1 CM039046.1 98.62 True translocation 7771316 7772740 7798796 7800220 NC_060945.1 CM039046.1 98.25 True local misassembly 7773004 7773728 7801192 7801916 NC_060945.1 CM039046.1 98.76 True local misassembly 7774717 7782174 7802906 7810365 NC_060945.1 CM039046.1 98.78 True indel: indel (> 5bp) 7782263 8243065 7810371 8271804 NC_060945.1 CM039046.1 99.3 True translocation 11177094 11483528 8271805 8577770 NC_060937.1 CM039046.1 99.63 True local misassembly 11481656 11483596 8577771 8579711 NC_060937.1 CM039046.1 100.0 True translocation 8543229 8878260 8581512 8916515 NC_060945.1 CM039046.1 99.76 True translocation 11806169 11819466 8916516 8930497 NC_060937.1 CM039046.1 98.39 True translocation 8882342 9377430 8930498 9427079 NC_060945.1 CM039046.1 99.01 True translocation 12399373 12400285 9427080 9427992 NC_060937.1 CM039046.1 95.99 True local misassembly 12400991 12411509 9428698 9439235 NC_060937.1 CM039046.1 95.42 True translocation 9425490 9431095 9439925 9445523 NC_060945.1 CM039046.1 95.9 True relocation, inconsistency = -35226 9395870 9398629 9445524 9448285 NC_060945.1 CM039046.1 95.56 True indel: stretch of mismatches 9398772 9401220 9448428 9450878 NC_060945.1 CM039046.1 96.53 True local misassembly 9402800 9407291 9452460 9456940 NC_060945.1 CM039046.1 95.76 True relocation, inconsistency = 35227 9442519 9986192 9456941 9999950 NC_060945.1 CM039046.1 99.56 True relocation, inconsistency = 8967 9995160 10699913 9999951 10705035 NC_060945.1 CM039046.1 99.88 True local misassembly 10700398 10849154 10705622 10852615 NC_060945.1 CM039046.1 98.48 True relocation, inconsistency = -9237 10839918 10871052 10852616 10883211 NC_060945.1 CM039046.1 98.07 True fake: not a misassembly (possible transposable element) 10885514 10886263 10883694 10884443 NC_060945.1 CM039046.1 97.6 True fake: not a misassembly (possible transposable element) 10873676 10877752 10884867 10888942 NC_060945.1 CM039046.1 98.68 True relocation, inconsistency = 47383 10925136 10926157 10888943 10889964 NC_060945.1 CM039046.1 98.28 True indel: indel (<= 5bp) 10926158 10927658 10889966 10891466 NC_060945.1 CM039046.1 96.8 True local misassembly 10928586 10929116 10892648 10893178 NC_060945.1 CM039046.1 97.18 True relocation, inconsistency = -15315 10914391 10915211 10893768 10894588 NC_060945.1 CM039046.1 98.17 True indel: indel (<= 5bp) 10915213 10915779 10894589 10895155 NC_060945.1 CM039046.1 97.0 True local misassembly 10915995 10919860 10895576 10899441 NC_060945.1 CM039046.1 99.2 True local misassembly 10920808 10921660 10899508 10900360 NC_060945.1 CM039046.1 96.72 True indel: indel (<= 5bp) 10921661 10923888 10900362 10902589 NC_060945.1 CM039046.1 98.11 True local misassembly 10923889 10926157 10903051 10905319 NC_060945.1 CM039046.1 99.52 True indel: indel (<= 5bp) 10926158 10928490 10905321 10907653 NC_060945.1 CM039046.1 99.66 True indel: indel (<= 5bp) 10928496 10929864 10907654 10909022 NC_060945.1 CM039046.1 97.81 True local misassembly 10930508 10932318 10909412 10911222 NC_060945.1 CM039046.1 98.62 True relocation, inconsistency = -66636 10865806 10871052 10911346 10916591 NC_060945.1 CM039046.1 98.86 True relocation, inconsistency = 17285 10889552 10902510 10917806 10930264 NC_060945.1 CM039046.1 95.0 True relocation, inconsistency = -34485 10868395 10878565 10930634 10940802 NC_060945.1 CM039046.1 99.61 True relocation, inconsistency = 50352 10928918 10948495 10940803 10960379 NC_060945.1 CM039046.1 99.69 True fake: not a misassembly (possible transposable element) 10923218 10925938 10960429 10963149 NC_060945.1 CM039046.1 97.43 True fake: not a misassembly (possible transposable element) 10955630 10963205 10964041 10971612 NC_060945.1 CM039046.1 99.3 True relocation, inconsistency = 143970 11107176 11149561 10971613 11015033 NC_060945.1 CM039046.1 96.68 True relocation, inconsistency = -128148 11021418 11037699 11015038 11031317 NC_060945.1 CM039046.1 99.32 True local misassembly 11038904 11042119 11032693 11035908 NC_060945.1 CM039046.1 99.6 True local misassembly 11043470 11054117 11037430 11048081 NC_060945.1 CM039046.1 99.01 True indel: stretch of mismatches 11054207 11055535 11048171 11049500 NC_060945.1 CM039046.1 98.81 True relocation, inconsistency = -52696 11002840 11041624 11049501 11088454 NC_060945.1 CM039046.1 98.32 True relocation, inconsistency = 30253 11071878 11126283 11088455 11142866 NC_060945.1 CM039046.1 99.19 True relocation, inconsistency = -73082 11056881 11150551 11146546 11241260 NC_060945.1 CM039046.1 98.05 True relocation, inconsistency = -75961 11074591 11121149 11241261 11287814 NC_060945.1 CM039046.1 99.49 True local misassembly 11122668 11126406 11288144 11291882 NC_060945.1 CM039046.1 99.68 True indel: indel (<= 5bp) 11126407 11137282 11291884 11302759 NC_060945.1 CM039046.1 99.83 True indel: indel (<= 5bp) 11137423 11138966 11302902 11304445 NC_060945.1 CM039046.1 99.29 True local misassembly 11139309 11140836 11304446 11305973 NC_060945.1 CM039046.1 99.35 True local misassembly 11140837 11142364 11306316 11307843 NC_060945.1 CM039046.1 99.21 True local misassembly 11142707 11144418 11307844 11309555 NC_060945.1 CM039046.1 99.12 True indel: indel (<= 5bp) 11144559 11146286 11309698 11311425 NC_060945.1 CM039046.1 99.19 True indel: indel (<= 5bp) 11146288 11147972 11311426 11313110 NC_060945.1 CM039046.1 99.41 True local misassembly 11147973 11149500 11313453 11314980 NC_060945.1 CM039046.1 99.21 True local misassembly 11149841 11153238 11314981 11318378 NC_060945.1 CM039046.1 99.71 True local misassembly 11153239 11155091 11318721 11320573 NC_060945.1 CM039046.1 99.84 True indel: indel (<= 5bp) 11155093 11156636 11320574 11322117 NC_060945.1 CM039046.1 99.74 True local misassembly 11149841 11151693 11322118 11323970 NC_060945.1 CM039046.1 99.78 True indel: indel (<= 5bp) 11151695 11158829 11323971 11331105 NC_060945.1 CM039046.1 99.86 True indel: indel (<= 5bp) 11158831 11163956 11331106 11336231 NC_060945.1 CM039046.1 99.69 True indel: indel (<= 5bp) 11164099 11176176 11336372 11348449 NC_060945.1 CM039046.1 99.9 True local misassembly 11176519 11178046 11348450 11349977 NC_060945.1 CM039046.1 99.35 True local misassembly 11178047 11179758 11350320 11352031 NC_060945.1 CM039046.1 99.24 True indel: indel (<= 5bp) 11179901 11181698 11352172 11353969 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11181701 11183021 11353970 11355290 NC_060945.1 CM039046.1 99.85 True local misassembly 11183360 11185096 11355291 11357027 NC_060945.1 CM039046.1 99.37 True indel: indel (<= 5bp) 11185099 11186278 11357028 11358207 NC_060945.1 CM039046.1 99.77 True relocation, inconsistency = -148189 11038090 11054117 11358208 11374231 NC_060945.1 CM039046.1 99.02 True relocation, inconsistency = 134761 11188879 11190110 11374232 11375463 NC_060945.1 CM039046.1 99.61 True local misassembly 11190111 11192174 11375804 11377867 NC_060945.1 CM039046.1 99.37 True relocation, inconsistency = -62357 11130287 11132014 11378337 11380064 NC_060945.1 CM039046.1 98.84 True indel: indel (<= 5bp) 11132157 11133702 11380205 11381750 NC_060945.1 CM039046.1 99.61 True local misassembly 11133703 11137282 11382091 11385670 NC_060945.1 CM039046.1 99.41 True indel: indel (<= 5bp) 11137283 11139291 11385672 11387680 NC_060945.1 CM039046.1 99.4 True indel: indel (<= 5bp) 11139293 11140836 11387681 11389224 NC_060945.1 CM039046.1 99.61 True local misassembly 11140837 11147972 11389565 11396700 NC_060945.1 CM039046.1 99.5 True local misassembly 11147973 11149684 11397042 11398753 NC_060945.1 CM039046.1 99.24 True indel: indel (<= 5bp) 11149685 11151693 11398755 11400763 NC_060945.1 CM039046.1 99.45 True indel: indel (<= 5bp) 11151695 11153238 11400764 11402307 NC_060945.1 CM039046.1 99.81 True local misassembly 11153239 11154950 11402649 11404360 NC_060945.1 CM039046.1 98.89 True indel: indel (<= 5bp) 11155093 11156820 11404501 11406228 NC_060945.1 CM039046.1 99.48 True indel: indel (<= 5bp) 11156821 11158688 11406230 11408097 NC_060945.1 CM039046.1 99.2 True indel: indel (<= 5bp) 11158831 11160374 11408238 11409781 NC_060945.1 CM039046.1 99.55 True local misassembly 11160375 11162227 11410123 11411975 NC_060945.1 CM039046.1 99.24 True indel: indel (<= 5bp) 11162229 11163956 11411976 11413703 NC_060945.1 CM039046.1 99.02 True indel: indel (<= 5bp) 11164099 11165967 11413844 11415712 NC_060945.1 CM039046.1 99.36 True indel: indel (<= 5bp) 11165969 11167512 11415713 11417256 NC_060945.1 CM039046.1 99.68 True local misassembly 11167513 11171094 11417597 11421178 NC_060945.1 CM039046.1 99.3 True indel: indel (<= 5bp) 11171095 11174648 11421180 11424733 NC_060945.1 CM039046.1 99.24 True local misassembly 11174649 11176360 11425076 11426787 NC_060945.1 CM039046.1 98.71 True indel: indel (<= 5bp) 11176503 11177716 11426928 11428141 NC_060945.1 CM039046.1 99.18 True local misassembly 11178055 11183314 11428142 11433401 NC_060945.1 CM039046.1 99.41 True local misassembly 11183315 11185026 11433744 11435455 NC_060945.1 CM039046.1 98.71 True indel: indel (<= 5bp) 11185169 11186338 11435596 11436765 NC_060945.1 CM039046.1 99.18 True relocation, inconsistency = -83433 11102906 11181300 11436766 11517886 NC_060945.1 CM039046.1 95.85 True local misassembly 11174843 11177716 11517887 11520760 NC_060945.1 CM039046.1 99.35 True local misassembly 11178055 11180737 11520761 11523443 NC_060945.1 CM039046.1 99.4 True relocation, inconsistency = -58960 11121778 11122667 11523444 11524333 NC_060945.1 CM039046.1 98.88 True indel: indel (<= 5bp) 11122668 11126406 11524335 11528073 NC_060945.1 CM039046.1 99.14 True indel: indel (<= 5bp) 11126407 11127384 11528075 11529052 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11127386 11128578 11529053 11530245 NC_060945.1 CM039046.1 99.33 True indel: indel (<= 5bp) 11128580 11130145 11530246 11531811 NC_060945.1 CM039046.1 99.17 True indel: indel (<= 5bp) 11130146 11132993 11531813 11534660 NC_060945.1 CM039046.1 99.4 True relocation, inconsistency = -11216 11121778 11122667 11534661 11535550 NC_060945.1 CM039046.1 98.99 True indel: indel (<= 5bp) 11122668 11123645 11535552 11536529 NC_060945.1 CM039046.1 99.49 True indel: indel (<= 5bp) 11123647 11126406 11536530 11539289 NC_060945.1 CM039046.1 99.17 True indel: indel (<= 5bp) 11126407 11129254 11539291 11542138 NC_060945.1 CM039046.1 99.33 True relocation, inconsistency = -9347 11119908 11122667 11542139 11544898 NC_060945.1 CM039046.1 99.31 True indel: indel (<= 5bp) 11122668 11125515 11544900 11547747 NC_060945.1 CM039046.1 99.37 True indel: indel (<= 5bp) 11125517 11126406 11547748 11548637 NC_060945.1 CM039046.1 98.99 True indel: stretch of mismatches 11126710 11127384 11548941 11549615 NC_060945.1 CM039046.1 99.41 True indel: indel (<= 5bp) 11127386 11130145 11549616 11552375 NC_060945.1 CM039046.1 98.99 True indel: indel (<= 5bp) 11130146 11131123 11552377 11553354 NC_060945.1 CM039046.1 99.49 True indel: indel (<= 5bp) 11131125 11132317 11553355 11554547 NC_060945.1 CM039046.1 99.33 True relocation, inconsistency = -9347 11122971 11126406 11554548 11557983 NC_060945.1 CM039046.1 99.16 True indel: indel (<= 5bp) 11126407 11127384 11557985 11558962 NC_060945.1 CM039046.1 99.49 True indel: indel (<= 5bp) 11127386 11129254 11558963 11560831 NC_060945.1 CM039046.1 99.57 True relocation, inconsistency = -9347 11119908 11122667 11560832 11563591 NC_060945.1 CM039046.1 99.31 True indel: indel (<= 5bp) 11122668 11125515 11563593 11566440 NC_060945.1 CM039046.1 99.3 True indel: indel (<= 5bp) 11125517 11126406 11566441 11567330 NC_060945.1 CM039046.1 98.99 True indel: indel (<= 5bp) 11126407 11130145 11567332 11571070 NC_060945.1 CM039046.1 99.14 True indel: indel (<= 5bp) 11130146 11131123 11571072 11572049 NC_060945.1 CM039046.1 99.49 True indel: indel (<= 5bp) 11131125 11132317 11572050 11573242 NC_060945.1 CM039046.1 99.41 True indel: indel (<= 5bp) 11132319 11132993 11573243 11573917 NC_060945.1 CM039046.1 99.7 True indel: indel (<= 5bp) 11132995 11133700 11573918 11574623 NC_060945.1 CM039046.1 99.15 True local misassembly 11133701 11136391 11574966 11577656 NC_060945.1 CM039046.1 99.22 True relocation, inconsistency = 17669 11154061 11156820 11577657 11580416 NC_060945.1 CM039046.1 99.17 True indel: indel (<= 5bp) 11156961 11159667 11580559 11583265 NC_060945.1 CM039046.1 99.34 True indel: indel (<= 5bp) 11159669 11160374 11583266 11583971 NC_060945.1 CM039046.1 99.29 True local misassembly 11160375 11164935 11584314 11588874 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11164937 11167512 11588875 11591450 NC_060945.1 CM039046.1 99.3 True local misassembly 11167513 11170203 11591793 11594483 NC_060945.1 CM039046.1 99.41 True relocation, inconsistency = -50296 11119908 11122667 11594484 11597243 NC_060945.1 CM039046.1 99.17 True indel: indel (<= 5bp) 11122668 11123645 11597245 11598222 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11123647 11126406 11598223 11600982 NC_060945.1 CM039046.1 99.17 True indel: indel (<= 5bp) 11126407 11129254 11600984 11603831 NC_060945.1 CM039046.1 99.3 True indel: indel (<= 5bp) 11129256 11130145 11603832 11604721 NC_060945.1 CM039046.1 98.88 True indel: indel (<= 5bp) 11130146 11132993 11604723 11607570 NC_060945.1 CM039046.1 99.37 True indel: indel (<= 5bp) 11132995 11133700 11607571 11608276 NC_060945.1 CM039046.1 99.15 True local misassembly 11133701 11136391 11608619 11611309 NC_060945.1 CM039046.1 99.33 True indel: indel (<= 5bp) 11136393 11137282 11611310 11612199 NC_060945.1 CM039046.1 98.76 True indel: indel (<= 5bp) 11137423 11140129 11612342 11615048 NC_060945.1 CM039046.1 99.22 True indel: indel (<= 5bp) 11140131 11140836 11615049 11615754 NC_060945.1 CM039046.1 99.01 True local misassembly 11140837 11144418 11616097 11619678 NC_060945.1 CM039046.1 99.13 True indel: indel (<= 5bp) 11144559 11147265 11619821 11622527 NC_060945.1 CM039046.1 99.3 True relocation, inconsistency = 31603 11178869 11182607 11622528 11626266 NC_060945.1 CM039046.1 99.38 True indel: indel (<= 5bp) 11182609 11183314 11626267 11626972 NC_060945.1 CM039046.1 98.87 True local misassembly 11183315 11186005 11627315 11630005 NC_060945.1 CM039046.1 99.26 True relocation, inconsistency = -31945 11154061 11156820 11630006 11632765 NC_060945.1 CM039046.1 98.91 True indel: indel (<= 5bp) 11156961 11160374 11632908 11636321 NC_060945.1 CM039046.1 99.03 True local misassembly 11160375 11161195 11636664 11637484 NC_060945.1 CM039046.1 99.27 True indel: indel (<= 5bp) 11161197 11167512 11637485 11643800 NC_060945.1 CM039046.1 99.1 True local misassembly 11167513 11171094 11644143 11647724 NC_060945.1 CM039046.1 99.05 True indel: indel (<= 5bp) 11171235 11174318 11647867 11650950 NC_060945.1 CM039046.1 99.22 True local misassembly 11174657 11177716 11650951 11654010 NC_060945.1 CM039046.1 99.28 True local misassembly 11178055 11178867 11654011 11654823 NC_060945.1 CM039046.1 99.51 True indel: indel (<= 5bp) 11178869 11182984 11654824 11658939 NC_060945.1 CM039046.1 99.22 True local misassembly 11183323 11186382 11658940 11661999 NC_060945.1 CM039046.1 99.35 True relocation, inconsistency = -65419 11120964 11122667 11662000 11663703 NC_060945.1 CM039046.1 99.0 True indel: indel (<= 5bp) 11122668 11126406 11663705 11667443 NC_060945.1 CM039046.1 99.25 True indel: indel (<= 5bp) 11126407 11127384 11667445 11668422 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11127386 11129254 11668423 11670291 NC_060945.1 CM039046.1 99.41 True indel: indel (<= 5bp) 11129256 11130145 11670292 11671181 NC_060945.1 CM039046.1 98.76 True indel: indel (<= 5bp) 11130146 11133700 11671183 11674737 NC_060945.1 CM039046.1 99.38 True local misassembly 11133701 11134521 11675080 11675900 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11134523 11136391 11675901 11677769 NC_060945.1 CM039046.1 99.36 True indel: indel (<= 5bp) 11136393 11137282 11677770 11678659 NC_060945.1 CM039046.1 98.99 True indel: indel (<= 5bp) 11137423 11140129 11678802 11681508 NC_060945.1 CM039046.1 99.11 True indel: indel (<= 5bp) 11140131 11140836 11681509 11682214 NC_060945.1 CM039046.1 99.15 True local misassembly 11140837 11144418 11682557 11686138 NC_060945.1 CM039046.1 99.25 True indel: indel (<= 5bp) 11144559 11147972 11686281 11689694 NC_060945.1 CM039046.1 99.3 True local misassembly 11147973 11149684 11690037 11691748 NC_060945.1 CM039046.1 99.12 True indel: indel (<= 5bp) 11149825 11152868 11691891 11694934 NC_060945.1 CM039046.1 99.11 True local misassembly 11153239 11156820 11695646 11699227 NC_060945.1 CM039046.1 99.08 True indel: indel (<= 5bp) 11156961 11159667 11699370 11702076 NC_060945.1 CM039046.1 99.37 True indel: indel (<= 5bp) 11159669 11160374 11702077 11702782 NC_060945.1 CM039046.1 99.15 True local misassembly 11160375 11163065 11703125 11705815 NC_060945.1 CM039046.1 99.11 True indel: indel (<= 5bp) 11163067 11167512 11705816 11710261 NC_060945.1 CM039046.1 99.01 True local misassembly 11167513 11168333 11710604 11711424 NC_060945.1 CM039046.1 98.9 True indel: indel (<= 5bp) 11168335 11171094 11711425 11714184 NC_060945.1 CM039046.1 99.09 True indel: indel (<= 5bp) 11171235 11174261 11714327 11717353 NC_060945.1 CM039046.1 99.22 True relocation, inconsistency = -58285 11115977 11122667 11717354 11724044 NC_060945.1 CM039046.1 99.22 True indel: indel (<= 5bp) 11122668 11125515 11724046 11726893 NC_060945.1 CM039046.1 99.47 True indel: indel (<= 5bp) 11125517 11126406 11726894 11727783 NC_060945.1 CM039046.1 98.76 True indel: indel (<= 5bp) 11126407 11127384 11727785 11728762 NC_060945.1 CM039046.1 99.39 True indel: indel (<= 5bp) 11127386 11130145 11728763 11731522 NC_060945.1 CM039046.1 99.09 True indel: indel (<= 5bp) 11130146 11132993 11731524 11734371 NC_060945.1 CM039046.1 99.58 True indel: indel (<= 5bp) 11132995 11133700 11734372 11735077 NC_060945.1 CM039046.1 99.15 True local misassembly 11133701 11136391 11735420 11738110 NC_060945.1 CM039046.1 99.37 True indel: indel (<= 5bp) 11136393 11137282 11738111 11739000 NC_060945.1 CM039046.1 98.99 True indel: indel (<= 5bp) 11137423 11140836 11739143 11742556 NC_060945.1 CM039046.1 99.24 True local misassembly 11140837 11141657 11742899 11743719 NC_060945.1 CM039046.1 99.27 True indel: indel (<= 5bp) 11141659 11143527 11743720 11745588 NC_060945.1 CM039046.1 99.3 True indel: indel (<= 5bp) 11143529 11144418 11745589 11746478 NC_060945.1 CM039046.1 99.1 True indel: indel (<= 5bp) 11144559 11145395 11746621 11747457 NC_060945.1 CM039046.1 99.28 True indel: indel (<= 5bp) 11145397 11147972 11747458 11750033 NC_060945.1 CM039046.1 99.22 True local misassembly 11147973 11149684 11750376 11752087 NC_060945.1 CM039046.1 99.36 True indel: indel (<= 5bp) 11149825 11153238 11752230 11755643 NC_060945.1 CM039046.1 99.33 True local misassembly 11153239 11156820 11755986 11759567 NC_060945.1 CM039046.1 98.88 True indel: indel (<= 5bp) 11156961 11160374 11759710 11763123 NC_060945.1 CM039046.1 99.18 True local misassembly 11160375 11163013 11763466 11766104 NC_060945.1 CM039046.1 99.28 True local misassembly 11164847 11166805 11767936 11769894 NC_060945.1 CM039046.1 99.03 True indel: indel (<= 5bp) 11166807 11167512 11769895 11770600 NC_060945.1 CM039046.1 99.01 True local misassembly 11167513 11171094 11770943 11774524 NC_060945.1 CM039046.1 98.83 True indel: indel (<= 5bp) 11171235 11174648 11774667 11778080 NC_060945.1 CM039046.1 99.15 True local misassembly 11174649 11178046 11778423 11781820 NC_060945.1 CM039046.1 99.09 True local misassembly 11178047 11183314 11782163 11787430 NC_060945.1 CM039046.1 99.22 True local misassembly 11183315 11184135 11787773 11788593 NC_060945.1 CM039046.1 99.51 True indel: indel (<= 5bp) 11184137 11186072 11788594 11790529 NC_060945.1 CM039046.1 99.38 True translocation, scaffold gap is present 12776680 13805829 11790730 12819493 NC_060937.1 CM039046.1 99.73 True translocation 10700932 10824964 12820508 12945203 NC_060945.1 CM039046.1 98.35 True local misassembly 10829411 10829914 12949793 12950296 NC_060945.1 CM039046.1 96.03 True indel: indel (<= 5bp) 10829920 10830584 12950297 12950961 NC_060945.1 CM039046.1 96.09 True indel: indel (> 5bp) 10830627 10831175 12950962 12951510 NC_060945.1 CM039046.1 95.08 True fake: not a misassembly (possible transposable element) 7763322 7764367 12953444 12952408 NC_060945.1 CM039046.1 96.08 True fake: not a misassembly (possible transposable element) 10838751 10841526 12957254 12960028 NC_060945.1 CM039046.1 97.08 True translocation 15453469 15457733 12960045 12964309 NC_060937.1 CM039046.1 98.41 True relocation, inconsistency = -1484440 13973297 13980217 12964313 12971218 NC_060937.1 CM039046.1 97.7 True relocation, inconsistency = 1019015 14999233 15001153 12971219 12973139 NC_060937.1 CM039046.1 97.61 True relocation, inconsistency = -42455 14958699 14960847 12973140 12975290 NC_060937.1 CM039046.1 98.61 True relocation, inconsistency = 481672 15442671 15452416 12975442 12984893 NC_060937.1 CM039046.1 95.09 True local misassembly 15455724 15460285 12984894 12989455 NC_060937.1 CM039046.1 98.51 True relocation, inconsistency = -1487912 13972525 13980298 12989607 12997367 NC_060937.1 CM039046.1 97.9 True relocation, inconsistency = -7288 13973059 13978559 12997416 13002907 NC_060937.1 CM039046.1 98.04 True local misassembly 13972525 13980303 13002908 13010720 NC_060937.1 CM039046.1 97.38 True local misassembly 13974269 13975553 13010721 13011996 NC_060937.1 CM039046.1 97.66 True local misassembly 13972532 13980217 13011997 13019670 NC_060937.1 CM039046.1 97.46 True local misassembly 13974183 13980286 13019671 13025760 NC_060937.1 CM039046.1 97.16 True relocation, inconsistency = 838507 14819229 14822092 13026196 13029059 NC_060937.1 CM039046.1 98.15 True relocation, inconsistency = 474729 15296822 15301005 13029060 13033284 NC_060937.1 CM039046.1 97.07 True local misassembly 15296822 15301485 13033285 13037947 NC_060937.1 CM039046.1 98.26 True relocation, inconsistency = -7323 15294552 15295059 13038337 13038844 NC_060937.1 CM039046.1 99.06 True relocation, inconsistency = 243891 15538951 15540598 13038845 13040492 NC_060937.1 CM039046.1 97.47 True relocation, inconsistency = -1568096 13972503 13980217 13040493 13048196 NC_060937.1 CM039046.1 97.67 True relocation, inconsistency = 1470911 15453447 15460279 13050515 13057343 NC_060937.1 CM039046.1 97.98 True relocation, inconsistency = -160609 15299671 15300976 13057344 13058649 NC_060937.1 CM039046.1 96.97 True relocation, inconsistency = -1328474 13972503 13980303 13058650 13066476 NC_060937.1 CM039046.1 97.21 True local misassembly 13974269 13980217 13066477 13072411 NC_060937.1 CM039046.1 97.45 True relocation, inconsistency = 1466518 15447100 15449281 13072776 13074957 NC_060937.1 CM039046.1 97.39 True relocation, inconsistency = -1476737 13972562 13978559 13074975 13080962 NC_060937.1 CM039046.1 97.71 True local misassembly 13972525 13980303 13080963 13088722 NC_060937.1 CM039046.1 97.72 True local misassembly 13974269 13980206 13088723 13094644 NC_060937.1 CM039046.1 97.74 True relocation, inconsistency = 1466519 15446726 15460285 13094645 13107867 NC_060937.1 CM039046.1 95.21 True local misassembly 15454260 15460285 13107868 13113893 NC_060937.1 CM039046.1 97.26 True relocation, inconsistency = -15651 15445008 15446074 13114267 13115333 NC_060937.1 CM039046.1 98.03 True local misassembly 15446369 15447099 13115334 13116064 NC_060937.1 CM039046.1 96.31 True indel: indel (<= 5bp) 15447100 15451325 13116066 13120291 NC_060937.1 CM039046.1 97.89 True indel: indel (<= 5bp) 15451622 15452393 13120584 13121355 NC_060937.1 CM039046.1 98.19 True local misassembly 15452688 15458005 13121356 13126673 NC_060937.1 CM039046.1 98.08 True relocation, inconsistency = -548267 14909739 14919124 13126674 13135974 NC_060937.1 CM039046.1 96.81 True relocation, inconsistency = 530981 15450113 15451325 13135982 13137194 NC_060937.1 CM039046.1 98.27 True indel: indel (<= 5bp) 15451327 15452393 13137195 13138261 NC_060937.1 CM039046.1 97.56 True local misassembly 15452973 15456254 13138546 13141827 NC_060937.1 CM039046.1 97.9 True indel: indel (> 5bp) 15456297 15458359 13141828 13143890 NC_060937.1 CM039046.1 98.84 True relocation, inconsistency = -230836 15227524 15235503 13143891 13151826 NC_060937.1 CM039046.1 97.42 True relocation, inconsistency = -1258994 13976510 13980303 13151827 13155615 NC_060937.1 CM039046.1 97.48 True relocation, inconsistency = 1323653 15304046 15311099 13155705 13162715 NC_060937.1 CM039046.1 96.98 True relocation, inconsistency = -1338726 13972525 13980297 13162867 13170587 NC_060937.1 CM039046.1 96.98 True local misassembly 13977285 13978559 13170588 13171862 NC_060937.1 CM039046.1 97.09 True local misassembly 13972525 13980297 13171863 13179625 NC_060937.1 CM039046.1 97.83 True local misassembly 13977285 13978559 13179626 13180900 NC_060937.1 CM039046.1 97.73 True local misassembly 13972525 13979141 13180901 13187507 NC_060937.1 CM039046.1 97.83 True relocation, inconsistency = 906979 14886121 14895890 13187508 13197276 NC_060937.1 CM039046.1 97.83 True relocation, inconsistency = 13534 14909739 14919508 13197591 13207318 NC_060937.1 CM039046.1 97.37 True fake: not a misassembly (possible transposable element) 15458737 15459936 13207319 13208518 NC_060937.1 CM039046.1 97.59 True fake: not a misassembly (possible transposable element) 14920586 14922313 13208519 13210247 NC_060937.1 CM039046.1 98.38 True relocation, inconsistency = -652743 14269654 14271822 13210331 13212499 NC_060937.1 CM039046.1 98.07 True relocation, inconsistency = 802532 15074355 15088016 13212500 13225855 NC_060937.1 CM039046.1 95.75 True relocation, inconsistency = 361387 15449404 15459081 13225856 13235193 NC_060937.1 CM039046.1 95.22 True local misassembly 15453232 15455017 13235370 13237155 NC_060937.1 CM039046.1 97.46 True relocation, inconsistency = -459849 14995169 15004913 13237156 13246858 NC_060937.1 CM039046.1 97.3 True relocation, inconsistency = 450810 15455724 15458764 13246859 13249894 NC_060937.1 CM039046.1 98.21 True relocation, inconsistency = -113325 15345440 15352174 13249895 13256588 NC_060937.1 CM039046.1 97.13 True relocation, inconsistency = -1057368 14294807 14316356 13256589 13277737 NC_060937.1 CM039046.1 95.92 True relocation, inconsistency = 1165875 15482362 15484225 13277868 13279731 NC_060937.1 CM039046.1 96.94 True local misassembly 15484226 15487097 13279982 13282853 NC_060937.1 CM039046.1 97.92 True relocation, inconsistency = -1514573 13972525 13979141 13282854 13289460 NC_060937.1 CM039046.1 97.79 True relocation, inconsistency = 1228688 15207830 15217599 13289461 13299229 NC_060937.1 CM039046.1 97.74 True relocation, inconsistency = -308175 14909739 14919508 13299544 13309271 NC_060937.1 CM039046.1 97.35 True fake: not a misassembly (possible transposable element) 15458737 15459936 13309272 13310471 NC_060937.1 CM039046.1 97.57 True fake: not a misassembly (possible transposable element) 14920586 14922313 13310472 13312200 NC_060937.1 CM039046.1 98.38 True relocation, inconsistency = -595240 14327157 14329380 13312284 13314507 NC_060937.1 CM039046.1 98.11 True relocation, inconsistency = -35223 14295219 14316356 13315569 13336357 NC_060937.1 CM039046.1 96.08 True relocation, inconsistency = -342672 13973685 13979849 13336358 13342470 NC_060937.1 CM039046.1 97.19 True relocation, inconsistency = 1466519 15446369 15459081 13342471 13354888 NC_060937.1 CM039046.1 95.52 True relocation, inconsistency = -1160611 14298471 14304069 13354889 13360486 NC_060937.1 CM039046.1 97.67 True relocation, inconsistency = -34499 14269654 14271793 13360570 13362709 NC_060937.1 CM039046.1 98.16 True relocation, inconsistency = -299291 13972503 13979166 13362710 13369321 NC_060937.1 CM039046.1 97.41 True relocation, inconsistency = 1016002 14995169 15004913 13369322 13379024 NC_060937.1 CM039046.1 97.25 True relocation, inconsistency = -1031076 13973838 13979900 13379025 13385068 NC_060937.1 CM039046.1 97.8 True relocation, inconsistency = 1365539 15345440 15353508 13385069 13393098 NC_060937.1 CM039046.1 96.98 True relocation, inconsistency = -1378643 13974866 13975546 13393099 13393770 NC_060937.1 CM039046.1 97.81 True local misassembly 13972525 13980303 13393771 13401539 NC_060937.1 CM039046.1 97.72 True local misassembly 13974269 13979966 13401540 13407227 NC_060937.1 CM039046.1 97.71 True relocation, inconsistency = 1368552 15348519 15361434 13407228 13420104 NC_060937.1 CM039046.1 97.38 True relocation, inconsistency = -1091864 14269654 14271793 13420188 13422327 NC_060937.1 CM039046.1 98.16 True relocation, inconsistency = -299291 13972503 13975546 13422328 13425319 NC_060937.1 CM039046.1 97.48 True local misassembly 13972525 13980303 13425320 13433089 NC_060937.1 CM039046.1 98.01 True relocation, inconsistency = 1472838 15453232 15460077 13433180 13440008 NC_060937.1 CM039046.1 97.29 True relocation, inconsistency = -778964 14681114 14688804 13440009 13447674 NC_060937.1 CM039046.1 97.53 True relocation, inconsistency = 367438 15056503 15059994 13447935 13451384 NC_060937.1 CM039046.1 95.55 True relocation, inconsistency = -765188 14294807 14316499 13451385 13472680 NC_060937.1 CM039046.1 95.9 True relocation, inconsistency = -342672 13973828 13980204 13472681 13479048 NC_060937.1 CM039046.1 97.84 True relocation, inconsistency = 929552 14909758 14915537 13479050 13484786 NC_060937.1 CM039046.1 97.27 True relocation, inconsistency = 426951 15342489 15349163 13484787 13491421 NC_060937.1 CM039046.1 97.34 True relocation, inconsistency = -1054357 14294807 14316509 13491422 13512728 NC_060937.1 CM039046.1 95.9 True relocation, inconsistency = -342672 13973838 13975546 13512729 13514428 NC_060937.1 CM039046.1 97.74 True local misassembly 13972525 13980186 13514429 13522080 NC_060937.1 CM039046.1 97.8 True relocation, inconsistency = 929552 14909739 14919428 13522081 13531727 NC_060937.1 CM039046.1 97.19 True relocation, inconsistency = -664559 14254927 14256288 13531785 13533146 NC_060937.1 CM039046.1 96.62 True indel: indel (> 5bp) 14256331 14257701 13533147 13534517 NC_060937.1 CM039046.1 98.4 True indel: indel (<= 5bp) 14257702 14259073 13534519 13535890 NC_060937.1 CM039046.1 97.59 True indel: indel (> 5bp) 14259084 14259671 13535891 13536478 NC_060937.1 CM039046.1 98.02 True relocation, inconsistency = -287147 13972525 13980186 13536479 13544113 NC_060937.1 CM039046.1 97.61 True relocation, inconsistency = 929552 14909739 14919201 13544114 13553532 NC_060937.1 CM039046.1 97.32 True relocation, inconsistency = -624395 14294807 14316509 13553533 13574839 NC_060937.1 CM039046.1 95.94 True relocation, inconsistency = -9343 14307167 14316356 13574840 13583682 NC_060937.1 CM039046.1 95.89 True relocation, inconsistency = -342672 13973685 13979165 13583683 13589153 NC_060937.1 CM039046.1 97.81 True relocation, inconsistency = 906979 14886145 14895890 13589154 13598856 NC_060937.1 CM039046.1 97.27 True relocation, inconsistency = -922053 13973838 13975546 13598857 13600557 NC_060937.1 CM039046.1 97.91 True local misassembly 13972525 13980303 13600558 13608327 NC_060937.1 CM039046.1 98.01 True local misassembly 13974269 13976382 13608328 13610431 NC_060937.1 CM039046.1 97.02 True local misassembly 13973361 13978559 13610432 13615579 NC_060937.1 CM039046.1 97.19 True local misassembly 13972525 13980191 13615580 13623194 NC_060937.1 CM039046.1 97.22 True relocation, inconsistency = 1442139 15422462 15429580 13623326 13630442 NC_060937.1 CM039046.1 97.54 True relocation, inconsistency = -1457213 13972525 13976552 13630600 13634619 NC_060937.1 CM039046.1 97.97 True relocation, inconsistency = 318254 14294807 14304069 13634620 13643882 NC_060937.1 CM039046.1 97.69 True relocation, inconsistency = -34499 14269654 14271793 13643966 13646105 NC_060937.1 CM039046.1 98.16 True relocation, inconsistency = -299291 13972503 13979166 13646106 13652717 NC_060937.1 CM039046.1 97.42 True relocation, inconsistency = 1016002 14995169 15004913 13652718 13662420 NC_060937.1 CM039046.1 97.24 True relocation, inconsistency = -1031076 13973838 13980132 13662421 13668696 NC_060937.1 CM039046.1 97.84 True relocation, inconsistency = 400615 14380748 14390572 13668697 13678478 NC_060937.1 CM039046.1 97.28 True relocation, inconsistency = -416735 13973838 13978559 13678479 13683191 NC_060937.1 CM039046.1 97.76 True local misassembly 13972525 13979966 13683192 13690623 NC_060937.1 CM039046.1 97.73 True relocation, inconsistency = 1368552 15348519 15361434 13690624 13703500 NC_060937.1 CM039046.1 97.4 True relocation, inconsistency = -1091864 14269654 14271793 13703584 13705723 NC_060937.1 CM039046.1 98.16 True relocation, inconsistency = -299291 13972503 13980303 13705724 13713514 NC_060937.1 CM039046.1 97.73 True local misassembly 13974269 13979966 13713515 13719202 NC_060937.1 CM039046.1 97.73 True relocation, inconsistency = 1368552 15348519 15361434 13719203 13732079 NC_060937.1 CM039046.1 97.4 True relocation, inconsistency = -1091864 14269654 14271793 13732163 13734302 NC_060937.1 CM039046.1 98.2 True relocation, inconsistency = -299291 13972503 13978559 13734303 13740307 NC_060937.1 CM039046.1 97.48 True local misassembly 13972525 13980303 13740308 13748077 NC_060937.1 CM039046.1 98.16 True local misassembly 13974269 13977768 13748078 13751568 NC_060937.1 CM039046.1 98.15 True relocation, inconsistency = 1089762 15067531 15078547 13751569 13762541 NC_060937.1 CM039046.1 97.49 True relocation, inconsistency = 204116 15282664 15285802 13762542 13765675 NC_060937.1 CM039046.1 97.66 True relocation, inconsistency = 59609 15345440 15353236 13765704 13773455 NC_060937.1 CM039046.1 97.09 True relocation, inconsistency = -1381030 13972525 13974737 13773774 13775986 NC_060937.1 CM039046.1 98.19 True relocation, inconsistency = 1083451 15058189 15088016 13775987 13805077 NC_060937.1 CM039046.1 95.48 True relocation, inconsistency = -780850 14307167 14316499 13805078 13814062 NC_060937.1 CM039046.1 95.91 True relocation, inconsistency = -342672 13973828 13980204 13814063 13820430 NC_060937.1 CM039046.1 97.84 True relocation, inconsistency = 929552 14909758 14916188 13820432 13826819 NC_060937.1 CM039046.1 97.26 True relocation, inconsistency = -621382 14294807 14316509 13826820 13848126 NC_060937.1 CM039046.1 95.9 True relocation, inconsistency = -342672 13973838 13975546 13848127 13849826 NC_060937.1 CM039046.1 97.74 True local misassembly 13972525 13980186 13849827 13857478 NC_060937.1 CM039046.1 97.75 True relocation, inconsistency = 929552 14909739 14919508 13857479 13867204 NC_060937.1 CM039046.1 97.31 True relocation, inconsistency = 533202 15453162 15460285 13867656 13874695 NC_060937.1 CM039046.1 96.87 True relocation, inconsistency = -1484889 13975397 13978559 13874696 13877859 NC_060937.1 CM039046.1 97.04 True local misassembly 13972525 13980303 13877860 13885611 NC_060937.1 CM039046.1 97.7 True relocation, inconsistency = 1475851 15456155 15459050 13885612 13888507 NC_060937.1 CM039046.1 98.43 True relocation, inconsistency = -549312 14909739 14919201 13888508 13897926 NC_060937.1 CM039046.1 97.31 True relocation, inconsistency = -624395 14294807 14316202 13897927 13918926 NC_060937.1 CM039046.1 95.92 True relocation, inconsistency = -21396 14294807 14316509 13918927 13940233 NC_060937.1 CM039046.1 95.9 True relocation, inconsistency = -9343 14307167 14316356 13940234 13949076 NC_060937.1 CM039046.1 95.89 True relocation, inconsistency = -342672 13973685 13978559 13949077 13953941 NC_060937.1 CM039046.1 97.83 True local misassembly 13972525 13980297 13953942 13961662 NC_060937.1 CM039046.1 97.09 True local misassembly 13977285 13979166 13961663 13963544 NC_060937.1 CM039046.1 97.05 True relocation, inconsistency = 1016002 14995169 15004913 13963545 13973288 NC_060937.1 CM039046.1 97.79 True relocation, inconsistency = -95489 14909758 14916188 13973622 13980009 NC_060937.1 CM039046.1 97.26 True relocation, inconsistency = -621382 14294807 14316509 13980010 14001316 NC_060937.1 CM039046.1 95.89 True relocation, inconsistency = -342672 13973838 13978559 14001317 14006028 NC_060937.1 CM039046.1 97.76 True local misassembly 13972525 13980297 14006029 14013749 NC_060937.1 CM039046.1 97.09 True local misassembly 13977285 13979153 14013750 14015618 NC_060937.1 CM039046.1 97.05 True relocation, inconsistency = 930597 14909751 14919508 14015619 14025375 NC_060937.1 CM039046.1 97.8 True relocation, inconsistency = -622429 14297108 14308631 14025404 14036876 NC_060937.1 CM039046.1 97.22 True relocation, scaffold gap is present, inconsistency = 1086685 15395558 15398917 14037118 14040477 NC_060937.1 CM039046.1 97.87 True relocation, inconsistency = -1426393 13972525 13980303 14040478 14048246 NC_060937.1 CM039046.1 97.83 True local misassembly 13974269 13980297 14048247 14054223 NC_060937.1 CM039046.1 97.09 True relocation, inconsistency = 1502512 15482912 15488257 14054326 14059653 NC_060937.1 CM039046.1 97.53 True relocation, inconsistency = 57832 15546090 15550555 14059654 14064120 NC_060937.1 CM039046.1 98.55 True relocation, inconsistency = 1935686 17486242 17486778 14064121 14064657 NC_060937.1 CM039046.1 98.25 True local misassembly 17486779 17487456 14064830 14065507 NC_060937.1 CM039046.1 98.04 True translocation 10995590 11013098 14065508 14083022 NC_060945.1 CM039046.1 98.37 True translocation 17479635 17480486 14083023 14083874 NC_060937.1 CM039046.1 97.91 True translocation 10988110 11002174 14083875 14097942 NC_060945.1 CM039046.1 98.38 True relocation, inconsistency = 191535 11193710 11195011 14097943 14099244 NC_060945.1 CM039046.1 98.56 True indel: indel (<= 5bp) 11195012 11195804 14099246 14100038 NC_060945.1 CM039046.1 98.62 True translocation 17479477 17480486 14100039 14101048 NC_060937.1 CM039046.1 97.91 True translocation 10980630 10994398 14101049 14114820 NC_060945.1 CM039046.1 98.43 True translocation 17479635 17480486 14114821 14115672 NC_060937.1 CM039046.1 97.92 True translocation 10999330 11010224 14115673 14126570 NC_060945.1 CM039046.1 98.39 True relocation, inconsistency = -28050 10982175 11005618 14126571 14150018 NC_060945.1 CM039046.1 98.18 True local misassembly 11002898 11019449 14150019 14166569 NC_060945.1 CM039046.1 98.3 True translocation 17475724 17480780 14166677 14171735 NC_060937.1 CM039046.1 97.85 True local misassembly 17481782 17486373 14172907 14177496 NC_060937.1 CM039046.1 98.03 True translocation 11006236 11015027 14177497 14186288 NC_060945.1 CM039046.1 98.5 True translocation 17482414 17496587 14186289 14200463 NC_060937.1 CM039046.1 97.78 True relocation, inconsistency = -11385 17485203 17488943 14200464 14204204 NC_060937.1 CM039046.1 97.82 True translocation 10996908 11005278 14204205 14212572 NC_060945.1 CM039046.1 98.23 True fake: not a misassembly (possible transposable element) 17481878 17486395 14212606 14217119 NC_060937.1 CM039046.1 97.99 True fake: not a misassembly (possible transposable element) 11004388 11018318 14217120 14231047 NC_060945.1 CM039046.1 98.31 True relocation, inconsistency = 278872 11299284 11301700 14233141 14235557 NC_060945.1 CM039046.1 98.88 True translocation 17201618 17203607 14235558 14237549 NC_060937.1 CM039046.1 99.16 True relocation, inconsistency = 270239 17474199 17481460 14237902 14245340 NC_060937.1 CM039046.1 95.44 True relocation, inconsistency = -556783 16924678 16925390 14245341 14246053 NC_060937.1 CM039046.1 99.21 True relocation, inconsistency = 548456 17474199 17481460 14246406 14253844 NC_060937.1 CM039046.1 95.44 True local misassembly 17479807 17484822 14254230 14259244 NC_060937.1 CM039046.1 97.83 True translocation 10979355 11007098 14259245 14286993 NC_060945.1 CM039046.1 98.21 True translocation 17480775 17482355 14286994 14288574 NC_060937.1 CM039046.1 97.75 True local misassembly 17489326 17498447 14288575 14297701 NC_060937.1 CM039046.1 97.48 True translocation 10997746 11002628 14297702 14302584 NC_060945.1 CM039046.1 98.25 True translocation 17488784 17489327 14302994 14303537 NC_060937.1 CM039046.1 98.04 True translocation 10982502 10989079 14303538 14310115 NC_060945.1 CM039046.1 98.4 True relocation, inconsistency = 286548 11276018 11278857 14310506 14313345 NC_060945.1 CM039046.1 98.59 True local misassembly 11279480 11280337 14313629 14314315 NC_060945.1 CM039046.1 95.77 True relocation, inconsistency = -276688 11003650 11018318 14314316 14328984 NC_060945.1 CM039046.1 98.39 True translocation 17489615 17492553 14328985 14331926 NC_060937.1 CM039046.1 97.53 True translocation 10999330 11013389 14331927 14345986 NC_060945.1 CM039046.1 98.36 True relocation, inconsistency = -8840 11004940 11014959 14346377 14356396 NC_060945.1 CM039046.1 98.39 True translocation 17486768 17487456 14356397 14357257 NC_060937.1 CM039046.1 95.71 True translocation 10988110 10996559 14357258 14365706 NC_060945.1 CM039046.1 98.01 True relocation, inconsistency = -14450 10982502 10994689 14366099 14378286 NC_060945.1 CM039046.1 98.42 True relocation, inconsistency = -7141 10987837 10999999 14378575 14390563 NC_060945.1 CM039046.1 96.88 True translocation 17479626 17482918 14390564 14393855 NC_060937.1 CM039046.1 97.35 True local misassembly 17479517 17482939 14393856 14397277 NC_060937.1 CM039046.1 97.87 True translocation 10979342 10997754 14397278 14415690 NC_060945.1 CM039046.1 98.27 True local misassembly 11004045 11007404 14415691 14419050 NC_060945.1 CM039046.1 98.18 True local misassembly 11003665 11009259 14419051 14424645 NC_060945.1 CM039046.1 98.2 True local misassembly 11003650 11018318 14424646 14439314 NC_060945.1 CM039046.1 98.16 True local misassembly 11012709 11014969 14439315 14441575 NC_060945.1 CM039046.1 98.17 True translocation 17473009 17484881 14441576 14453447 NC_060937.1 CM039046.1 97.74 True local misassembly 17479610 17486677 14453448 14460517 NC_060937.1 CM039046.1 97.8 True translocation 11003650 11017134 14460518 14474002 NC_060945.1 CM039046.1 98.23 True translocation 17480781 17484788 14474003 14478006 NC_060937.1 CM039046.1 97.7 True local misassembly 17479517 17485772 14478007 14484261 NC_060937.1 CM039046.1 97.84 True translocation 11275693 11289897 14484262 14498468 NC_060945.1 CM039046.1 98.37 True local misassembly 11286158 11289685 14498469 14501996 NC_060945.1 CM039046.1 98.32 True relocation, inconsistency = -286036 11003650 11016248 14501997 14514591 NC_060945.1 CM039046.1 98.19 True translocation 17489326 17496587 14515693 14523120 NC_060937.1 CM039046.1 95.25 True local misassembly 17490334 17491873 14523150 14524689 NC_060937.1 CM039046.1 98.05 True local misassembly 17496295 17497615 14524865 14526185 NC_060937.1 CM039046.1 98.33 True indel: indel (<= 5bp) 17497616 17498447 14526187 14527018 NC_060937.1 CM039046.1 96.39 True relocation, inconsistency = -20225 17478459 17494717 14527255 14543672 NC_060937.1 CM039046.1 96.87 True local misassembly 17489621 17494425 14543673 14548476 NC_060937.1 CM039046.1 98.04 True relocation, inconsistency = -18355 17476071 17480488 14548477 14552892 NC_060937.1 CM039046.1 98.02 True local misassembly 17476071 17489589 14552893 14566409 NC_060937.1 CM039046.1 98.01 True relocation, inconsistency = -10709 17478881 17484910 14566410 14572434 NC_060937.1 CM039046.1 98.01 True relocation, inconsistency = -8840 17476071 17484648 14572435 14581008 NC_060937.1 CM039046.1 97.96 True relocation, inconsistency = -9348 17475301 17480486 14581009 14586186 NC_060937.1 CM039046.1 97.93 True translocation 10988110 11002174 14586187 14600235 NC_060945.1 CM039046.1 98.38 True translocation 17478232 17480487 14600236 14602492 NC_060937.1 CM039046.1 98.03 True translocation 10982502 10994398 14602493 14614389 NC_060945.1 CM039046.1 98.13 True translocation 17492164 17493196 14614852 14615884 NC_060937.1 CM039046.1 98.16 True indel: indel (<= 5bp) 17493197 17494746 14615886 14617435 NC_060937.1 CM039046.1 96.77 True local misassembly 17490334 17491873 14617436 14618975 NC_060937.1 CM039046.1 98.05 True local misassembly 17496295 17497615 14619151 14620471 NC_060937.1 CM039046.1 98.33 True local misassembly 17493197 17493742 14620473 14621018 NC_060937.1 CM039046.1 96.77 True local misassembly 17489326 17493745 14621019 14625608 NC_060937.1 CM039046.1 95.38 True relocation, inconsistency = -13257 17480489 17494717 14625609 14639824 NC_060937.1 CM039046.1 97.96 True local misassembly 17489621 17494425 14639825 14644628 NC_060937.1 CM039046.1 98.04 True relocation, inconsistency = -18355 17476071 17485202 14644629 14653756 NC_060937.1 CM039046.1 98.01 True local misassembly 17480781 17484907 14653757 14657877 NC_060937.1 CM039046.1 98.01 True translocation 10984370 10991849 14657878 14665353 NC_060945.1 CM039046.1 98.35 True relocation, inconsistency = 11900 11003750 11005519 14665354 14667119 NC_060945.1 CM039046.1 97.06 True relocation, inconsistency = -7480 10998040 11018288 14667120 14687540 NC_060945.1 CM039046.1 97.34 True local misassembly 11016419 11018288 14687541 14689410 NC_060945.1 CM039046.1 97.07 True relocation, inconsistency = -26860 10992025 11004939 14690007 14702921 NC_060945.1 CM039046.1 98.16 True relocation, inconsistency = -23630 10981310 11006952 14702922 14728560 NC_060945.1 CM039046.1 98.23 True translocation 17480629 17489589 14728561 14737521 NC_060937.1 CM039046.1 97.92 True local misassembly 17483302 17484907 14737522 14739123 NC_060937.1 CM039046.1 97.98 True translocation 11277888 11288899 14739124 14750137 NC_060945.1 CM039046.1 98.32 True translocation 17487422 17490851 14750138 14753564 NC_060937.1 CM039046.1 97.76 True relocation, inconsistency = -12408 17478444 17480487 14753565 14755605 NC_060937.1 CM039046.1 97.95 True translocation 10986242 10998129 14755606 14767493 NC_060945.1 CM039046.1 98.31 True local misassembly 10991670 10999999 14767495 14775825 NC_060945.1 CM039046.1 98.22 True local misassembly 11004760 11009274 14775827 14780341 NC_060945.1 CM039046.1 98.32 True local misassembly 11003665 11022739 14780342 14799417 NC_060945.1 CM039046.1 98.35 True translocation 17495903 17496972 14799418 14800487 NC_060937.1 CM039046.1 97.95 True local misassembly 17491196 17492553 14800488 14801847 NC_060937.1 CM039046.1 97.82 True translocation 10995590 11018296 14801848 14824546 NC_060945.1 CM039046.1 98.27 True relocation, inconsistency = -26180 10992117 10998123 14824547 14830553 NC_060945.1 CM039046.1 98.3 True relocation, inconsistency = -17681 10980443 11002174 14830554 14852281 NC_060945.1 CM039046.1 98.53 True translocation 17480781 17486392 14852282 14857884 NC_060937.1 CM039046.1 97.95 True relocation, inconsistency = -9347 17477075 17486951 14857914 14867786 NC_060937.1 CM039046.1 97.7 True relocation, inconsistency = -13768 17473184 17481340 14867787 14875942 NC_060937.1 CM039046.1 97.97 True relocation, inconsistency = -8157 17473184 17489395 14875943 14892147 NC_060937.1 CM039046.1 97.92 True local misassembly 17483108 17489325 14892148 14898367 NC_060937.1 CM039046.1 97.77 True relocation, inconsistency = -16317 17473009 17489448 14898368 14914798 NC_060937.1 CM039046.1 97.77 True relocation, inconsistency = -12578 17476871 17489417 14914799 14927510 NC_060937.1 CM039046.1 96.84 True local misassembly 17483130 17484227 14927511 14928608 NC_060937.1 CM039046.1 96.31 True translocation 11274828 11276597 14928609 14930378 NC_060945.1 CM039046.1 98.25 True relocation, inconsistency = -272948 11003650 11028049 14930379 14954777 NC_060945.1 CM039046.1 98.32 True translocation 17480477 17487056 14954778 14961528 NC_060937.1 CM039046.1 96.41 True local misassembly 17487737 17492848 14961529 14966641 NC_060937.1 CM039046.1 98.02 True relocation, inconsistency = -11729 17482066 17487751 14967588 14973272 NC_060937.1 CM039046.1 98.59 True local misassembly 17480781 17484907 14973273 14977397 NC_060937.1 CM039046.1 98.2 True local misassembly 17479807 17484907 14977398 14982495 NC_060937.1 CM039046.1 98.15 True local misassembly 17479807 17480486 14982496 14983175 NC_060937.1 CM039046.1 98.18 True translocation 11281626 11289400 14983176 14990949 NC_060945.1 CM039046.1 98.59 True translocation 17477042 17480486 14990950 14994392 NC_060937.1 CM039046.1 98.29 True local misassembly 17479807 17485096 14994393 14999680 NC_060937.1 CM039046.1 98.22 True translocation 11203462 11212237 14999681 15008453 NC_060945.1 CM039046.1 98.43 True relocation, inconsistency = -170793 11041445 11046249 15008454 15013258 NC_060945.1 CM039046.1 98.7 True translocation 17491196 17496416 15013259 15018480 NC_060937.1 CM039046.1 98.27 True relocation, inconsistency = -7647 17488770 17491877 15018481 15021589 NC_060937.1 CM039046.1 98.13 True relocation, inconsistency = -15807 17476071 17485807 15021590 15031323 NC_060937.1 CM039046.1 98.16 True translocation 10988671 11005198 15031324 15047851 NC_060945.1 CM039046.1 98.41 True translocation 17474458 17484954 15047852 15058348 NC_060937.1 CM039046.1 98.03 True local misassembly 17477984 17480513 15058349 15060879 NC_060937.1 CM039046.1 98.0 True local misassembly 17474227 17487071 15060880 15073722 NC_060937.1 CM039046.1 97.85 True local misassembly 17481461 17482679 15073723 15074941 NC_060937.1 CM039046.1 97.86 True indel: indel (<= 5bp) 17482682 17486778 15074942 15079038 NC_060937.1 CM039046.1 98.02 True local misassembly 17489624 17490329 15079676 15080381 NC_060937.1 CM039046.1 96.88 True indel: indel (<= 5bp) 17490334 17491875 15080382 15081923 NC_060937.1 CM039046.1 98.25 True translocation 10993722 11001881 15081926 15090075 NC_060945.1 CM039046.1 98.26 True relocation, inconsistency = 10540 11012422 11022449 15090076 15100099 NC_060945.1 CM039046.1 98.28 True relocation, inconsistency = 16830 11039280 11049985 15100100 15110805 NC_060945.1 CM039046.1 98.03 True translocation 17473009 17487466 15110806 15125255 NC_060937.1 CM039046.1 97.88 True local misassembly 17480488 17486776 15125256 15131696 NC_060937.1 CM039046.1 96.3 True relocation, inconsistency = -12578 17474199 17484522 15131697 15142188 NC_060937.1 CM039046.1 96.29 True translocation 11005915 11014308 15142189 15150582 NC_060945.1 CM039046.1 98.18 True relocation, inconsistency = -23630 10990679 11003739 15150583 15163643 NC_060945.1 CM039046.1 98.32 True translocation 17480477 17484909 15163644 15168246 NC_060937.1 CM039046.1 96.17 True translocation 11036732 11046249 15168247 15177764 NC_060945.1 CM039046.1 98.51 True relocation, inconsistency = -61880 10984370 10995879 15177765 15189272 NC_060945.1 CM039046.1 98.6 True translocation 17475169 17480486 15189273 15194591 NC_060937.1 CM039046.1 98.12 True local misassembly 17479807 17487071 15194592 15201854 NC_060937.1 CM039046.1 98.18 True translocation 10982175 10998417 15202425 15218667 NC_060945.1 CM039046.1 98.44 True relocation, inconsistency = -15640 10982778 10998417 15218668 15234307 NC_060945.1 CM039046.1 98.51 True translocation 17489604 17495786 15234308 15240493 NC_060937.1 CM039046.1 98.08 True relocation, inconsistency = -8156 17487631 17495890 15240494 15248753 NC_060937.1 CM039046.1 98.11 True relocation, inconsistency = -10701 17485307 17486778 15248871 15250342 NC_060937.1 CM039046.1 98.57 True local misassembly 17488100 17489309 15252175 15253384 NC_060937.1 CM039046.1 97.7 True translocation 11262744 11278146 15253385 15268796 NC_060945.1 CM039046.1 98.49 True relocation, inconsistency = -286038 10992109 10995976 15268797 15272660 NC_060945.1 CM039046.1 98.42 True relocation, inconsistency = -24480 10971960 10978437 15273124 15279599 NC_060945.1 CM039046.1 98.49 True local misassembly 10984048 11001169 15279600 15296723 NC_060945.1 CM039046.1 98.53 True relocation, inconsistency = 24990 11026183 11037699 15296747 15308267 NC_060945.1 CM039046.1 97.88 True local misassembly 11033960 11034717 15308268 15309025 NC_060945.1 CM039046.1 97.81 True translocation 19060446 19062042 15310699 15309104 NC_060928.1 CM039046.1 99.44 True translocation 10976822 11008505 15310715 15342224 NC_060945.1 CM039046.1 98.11 True relocation, inconsistency = 31451 11039957 11050926 15342225 15353182 NC_060945.1 CM039046.1 98.35 True relocation, inconsistency = -62215 10988720 11001480 15353191 15365947 NC_060945.1 CM039046.1 98.53 True relocation, inconsistency = 173353 11174834 11176998 15365948 15368112 NC_060945.1 CM039046.1 98.8 True indel: indel (<= 5bp) 11177067 11177631 15368179 15368743 NC_060945.1 CM039046.1 97.69 True relocation, inconsistency = -190693 10986939 11004058 15368744 15385861 NC_060945.1 CM039046.1 98.44 True relocation, inconsistency = 289954 11294013 11298201 15385862 15390050 NC_060945.1 CM039046.1 97.55 True translocation 17502662 17503229 15390051 15390619 NC_060937.1 CM039046.1 97.86 True local misassembly 17505562 17506878 15391089 15392405 NC_060937.1 CM039046.1 97.19 True local misassembly 17503159 17505159 15392411 15394412 NC_060937.1 CM039046.1 98.2 True local misassembly 17503499 17505151 15394950 15396601 NC_060937.1 CM039046.1 97.16 True local misassembly 17503701 17504377 15397346 15398022 NC_060937.1 CM039046.1 96.31 True local misassembly 17502186 17502928 15398023 15398765 NC_060937.1 CM039046.1 98.25 True indel: indel (<= 5bp) 17502929 17505021 15398767 15400859 NC_060937.1 CM039046.1 97.95 True local misassembly 17502929 17504353 15400962 15402386 NC_060937.1 CM039046.1 98.23 True local misassembly 17506214 17508412 15402387 15404581 NC_060937.1 CM039046.1 97.7 True local misassembly 17506214 17508692 15404582 15407061 NC_060937.1 CM039046.1 97.74 True relocation, inconsistency = -9630 17499063 17499844 15407062 15407843 NC_060937.1 CM039046.1 97.01 True local misassembly 17502213 17502928 15407844 15408559 NC_060937.1 CM039046.1 97.3 True indel: indel (<= 5bp) 17502929 17505021 15408561 15410653 NC_060937.1 CM039046.1 98.23 True local misassembly 17502929 17504353 15410756 15412180 NC_060937.1 CM039046.1 98.47 True local misassembly 17506214 17508412 15412181 15414379 NC_060937.1 CM039046.1 97.74 True local misassembly 17506214 17843466 15414380 15751497 NC_060937.1 CM039046.1 99.61 True translocation 14592762 14595682 15754434 15751498 NC_060942.1 CM039046.1 97.32 True translocation 17843444 17986399 15754435 15897403 NC_060937.1 CM039046.1 99.59 True relocation, inconsistency = -19316 17967416 17971211 15897736 15901527 NC_060937.1 CM039046.1 95.16 True indel: indel (> 5bp) 17971618 17979007 15901928 15909317 NC_060937.1 CM039046.1 95.41 True indel: indel (> 5bp) 17979248 18583345 15909575 16513368 NC_060937.1 CM039046.1 99.6 True indel: stretch of mismatches 18583385 19447819 16513408 17377731 NC_060937.1 CM039046.1 99.85 True local misassembly 19447816 20200675 17381040 18134375 NC_060937.1 CM039046.1 99.73 True indel: indel (> 5bp) 20200847 20399360 18134623 18332880 NC_060937.1 CM039046.1 99.47 True local misassembly 20399348 20642539 18333016 18579316 NC_060937.1 CM039046.1 98.33 True local misassembly 20642961 22113630 18580013 20053154 NC_060937.1 CM039046.1 99.49 True local misassembly 22115673 22261709 20053155 20196630 NC_060937.1 CM039046.1 97.56 True relocation, inconsistency = 7896 22269720 23097158 20196745 21023825 NC_060937.1 CM039046.1 99.85 True indel: indel (<= 5bp) 23097271 23397300 21023935 21323529 NC_060937.1 CM039046.1 99.29 True indel: indel (> 5bp) 23397454 23562788 21323663 21488976 NC_060937.1 CM039046.1 99.68 True indel: indel (> 5bp) 23562974 24089846 21489133 22016482 NC_060937.1 CM039046.1 99.57 True local misassembly 24090170 24231989 22016680 22158119 NC_060937.1 CM039046.1 99.2 True indel: indel (> 5bp) 24232043 30288495 22158163 28210884 NC_060937.1 CM039046.1 99.71 True local misassembly 30289658 33447238 28210885 31374360 NC_060937.1 CM039046.1 99.61 True indel: indel (<= 5bp) 33447312 35176666 31374431 33104268 NC_060937.1 CM039046.1 99.87 True local misassembly 35177321 38173409 33105350 36105233 NC_060937.1 CM039046.1 99.75 True local misassembly 38173268 44599224 36105234 42533408 NC_060937.1 CM039046.1 99.75 True local misassembly 44599129 45681743 42533978 43617686 NC_060937.1 CM039046.1 99.64 True local misassembly 45688002 48180483 43619811 46112699 NC_060937.1 CM039046.1 99.8 True local misassembly 48183776 48539674 46112897 46468841 NC_060937.1 CM039046.1 99.83 True indel: indel (> 5bp) 48539781 48767381 46468955 46696668 NC_060937.1 CM039046.1 99.87 True indel: indel (> 5bp) 48767587 54253300 46696889 52194538 NC_060937.1 CM039046.1 99.52 True indel: indel (> 5bp) 54253467 56383820 52194683 54324517 NC_060937.1 CM039046.1 99.9 True local misassembly 56390399 60197830 54324530 58129966 NC_060937.1 CM039046.1 99.68 True local misassembly 60200201 61281659 58131469 59215021 NC_060937.1 CM039046.1 99.52 True indel: indel (> 5bp) 61281717 66828336 59215119 64764290 NC_060937.1 CM039046.1 99.69 True local misassembly 66828372 72430553 64764879 70364243 NC_060937.1 CM039046.1 99.7 True indel: indel (> 5bp) 72430752 80211462 70364391 78144791 NC_060937.1 CM039046.1 99.78 True indel: indel (> 5bp) 80211588 81102475 78144945 79035409 NC_060937.1 CM039046.1 99.72 True indel: indel (> 5bp) 81102771 81836943 79035698 79769992 NC_060937.1 CM039046.1 99.81 True local misassembly 81837686 83950859 79770571 81883672 NC_060937.1 CM039046.1 99.8 True local misassembly 83952138 84999278 81885096 82928522 NC_060937.1 CM039046.1 99.34 True indel: indel (> 5bp) 84999396 85326551 82928580 83255005 NC_060937.1 CM039046.1 99.39 True indel: indel (<= 5bp) 85326619 85363398 83255077 83291844 NC_060937.1 CM039046.1 99.79 True local misassembly 85364100 85450774 83292002 83378704 NC_060937.1 CM039046.1 99.56 True local misassembly 85457442 85462353 83384290 83389152 NC_060937.1 CM039046.1 97.93 True local misassembly 85465983 85982054 83389776 83906705 NC_060937.1 CM039046.1 99.51 True local misassembly 85983343 86831539 83907789 84755738 NC_060937.1 CM039046.1 99.79 True local misassembly 86831949 97814164 84756246 95745414 NC_060937.1 CM039046.1 99.67 True local misassembly 97815618 99270254 95746960 97201385 NC_060937.1 CM039046.1 99.68 True local misassembly 99271598 104739272 97202499 102664907 NC_060937.1 CM039046.1 99.7 True local misassembly 104739593 105358783 102665077 103285089 NC_060937.1 CM039046.1 99.67 True indel: indel (> 5bp) 105358917 108445530 103285181 106372142 NC_060937.1 CM039046.1 99.76 True indel: indel (> 5bp) 108445626 108922452 106372246 106849049 NC_060937.1 CM039046.1 99.8 True local misassembly 108923304 109448177 106849744 107373837 NC_060937.1 CM039046.1 99.52 True indel: indel (> 5bp) 109448255 109481906 107373923 107407511 NC_060937.1 CM039046.1 99.38 True local misassembly 109482133 109614585 107407533 107540816 NC_060937.1 CM039046.1 98.67 True local misassembly 109616244 109892645 107542379 107819281 NC_060937.1 CM039046.1 99.09 True indel: indel (> 5bp) 109892763 110451100 107819435 108377713 NC_060937.1 CM039046.1 99.75 True local misassembly 110451213 110749417 108377714 108674398 NC_060937.1 CM039046.1 98.51 True local misassembly 110749648 111258618 108674742 109183423 NC_060937.1 CM039046.1 99.49 True indel: stretch of mismatches 111258643 111413109 109183448 109338667 NC_060937.1 CM039046.1 99.32 True indel: indel (> 5bp) 111413089 111536525 109338693 109460417 NC_060937.1 CM039046.1 96.74 True local misassembly 111539707 111540707 109462749 109463749 NC_060937.1 CM039046.1 99.1 True local misassembly 111541721 111542261 109466396 109466936 NC_060937.1 CM039046.1 98.15 True local misassembly 111542723 111545440 109467806 109470523 NC_060937.1 CM039046.1 99.37 True local misassembly 111546243 111547042 109470714 109471513 NC_060937.1 CM039046.1 99.38 True local misassembly 111547043 111548603 109471956 109473516 NC_060937.1 CM039046.1 99.23 True local misassembly 111548604 111549335 109473619 109474350 NC_060937.1 CM039046.1 99.45 True local misassembly 111549438 111550335 109474351 109475248 NC_060937.1 CM039046.1 99.55 True local misassembly 111550900 112599796 109476492 110528226 NC_060937.1 CM039046.1 99.25 True local misassembly 112599932 112675502 110528448 110602902 NC_060937.1 CM039046.1 96.98 True local misassembly 112676297 112771024 110603684 110698464 NC_060937.1 CM039046.1 97.38 True indel: indel (> 5bp) 112771098 112824107 110698465 110751302 NC_060937.1 CM039046.1 97.32 True local misassembly 112824835 113011512 110751846 110939936 NC_060937.1 CM039046.1 98.58 True local misassembly 113011713 113037764 110941217 110967001 NC_060937.1 CM039046.1 95.74 True local misassembly 113037986 113087194 110967361 111014640 NC_060937.1 CM039046.1 95.35 True local misassembly 113087794 113249902 111015189 111177081 NC_060937.1 CM039046.1 99.48 True local misassembly 113250548 113306048 111177324 111232789 NC_060937.1 CM039046.1 98.03 True local misassembly 113307352 113311042 111234950 111238640 NC_060937.1 CM039046.1 99.84 True indel: stretch of mismatches 113311330 113363771 111238928 111289862 NC_060937.1 CM039046.1 95.14 True local misassembly 113364173 113406844 111290615 111334017 NC_060937.1 CM039046.1 97.87 True indel: indel (> 5bp) 113407119 113563262 111334214 111492668 NC_060937.1 CM039046.1 98.35 True translocation 104 1542 111495408 111494007 NC_060931.1 CM039046.1 97.22 True translocation 61705546 61707344 111498351 111500149 NC_060943.1 CM039046.1 97.96 True local misassembly 61705717 61707364 111500150 111501777 NC_060943.1 CM039046.1 97.43 True CONTIG CM039046.1 111502864 misassembled 6383514 6547410 1 163766 NC_060946.1 CM039047.1 98.47 True translocation 3445846 3669380 163767 387274 NC_060938.1 CM039047.1 99.35 True local misassembly 3674425 3675976 392150 393697 NC_060938.1 CM039047.1 96.01 True indel: indel (> 5bp) 3676354 3676889 394109 394644 NC_060938.1 CM039047.1 96.27 True indel: indel (> 5bp) 3676918 3678126 394756 395964 NC_060938.1 CM039047.1 97.35 True local misassembly 3679876 3680679 397692 398495 NC_060938.1 CM039047.1 97.39 True local misassembly 3681282 3682100 399074 399892 NC_060938.1 CM039047.1 95.6 True indel: indel (<= 5bp) 3682101 3683431 399898 401228 NC_060938.1 CM039047.1 96.77 True local misassembly 3684483 3739930 402306 457728 NC_060938.1 CM039047.1 99.43 True relocation, inconsistency = 12013 3751944 3790033 457729 495829 NC_060938.1 CM039047.1 99.29 True local misassembly 3802107 3802651 505681 506225 NC_060938.1 CM039047.1 100.0 True local misassembly 3808447 3809020 514319 514892 NC_060938.1 CM039047.1 96.86 True local misassembly 3831299 3833730 534005 536430 NC_060938.1 CM039047.1 97.83 True local misassembly 3832807 4751155 536579 1451862 NC_060938.1 CM039047.1 99.47 True relocation, inconsistency = 34610 4785766 5523746 1451863 2189723 NC_060938.1 CM039047.1 99.83 True local misassembly 5519747 5892239 2189724 2562192 NC_060938.1 CM039047.1 99.95 True relocation, scaffold gap is present, inconsistency = 687662 6580402 6602357 2562693 2584648 NC_060938.1 CM039047.1 99.99 True relocation, inconsistency = -863477 5738881 6284367 2584649 3130377 NC_060938.1 CM039047.1 99.89 True local misassembly 6285183 6661029 3130378 3506241 NC_060938.1 CM039047.1 99.93 True indel: indel (> 5bp) 6661215 6982816 3506480 3828103 NC_060938.1 CM039047.1 99.91 True local misassembly 6981408 7371197 3828104 4217549 NC_060938.1 CM039047.1 99.62 True local misassembly 7371136 7431323 4218172 4279401 NC_060938.1 CM039047.1 96.44 True local misassembly 7433456 7452039 4282563 4301017 NC_060938.1 CM039047.1 97.8 True relocation, inconsistency = 46101 7498170 7500978 4301047 4303855 NC_060938.1 CM039047.1 98.43 True relocation, inconsistency = -7344 7493635 7495835 4303856 4306056 NC_060938.1 CM039047.1 98.78 True local misassembly 7492250 7498514 4306057 4312321 NC_060938.1 CM039047.1 98.74 True indel: indel (<= 5bp) 7498515 7500836 4312323 4314644 NC_060938.1 CM039047.1 98.66 True indel: indel (<= 5bp) 7500838 7501647 4314645 4315454 NC_060938.1 CM039047.1 97.9 True local misassembly 7501648 7502343 4315626 4316321 NC_060938.1 CM039047.1 99.14 True indel: indel (<= 5bp) 7502344 7504704 4316323 4318683 NC_060938.1 CM039047.1 98.77 True relocation, inconsistency = 10420 7515125 7515777 4318684 4319336 NC_060938.1 CM039047.1 99.69 True local misassembly 7515778 7518427 4319508 4322157 NC_060938.1 CM039047.1 98.87 True indel: indel (<= 5bp) 7518883 7520277 4322611 4324005 NC_060938.1 CM039047.1 99.07 True relocation, inconsistency = -17934 7502344 7504704 4324006 4326366 NC_060938.1 CM039047.1 98.73 True local misassembly 7511367 7513953 4326367 4328953 NC_060938.1 CM039047.1 98.96 True relocation, scaffold gap is present, inconsistency = -8022 7508249 7510911 4331271 4333933 NC_060938.1 CM039047.1 98.95 True indel: indel (<= 5bp) 7510913 7514669 4333934 4337690 NC_060938.1 CM039047.1 98.78 True indel: indel (<= 5bp) 7514671 7518427 4337691 4341447 NC_060938.1 CM039047.1 98.86 True local misassembly 7514671 7518427 4341448 4345204 NC_060938.1 CM039047.1 98.86 True indel: indel (<= 5bp) 7518429 7521149 4345205 4347925 NC_060938.1 CM039047.1 98.9 True local misassembly 7521150 7522015 4348096 4348961 NC_060938.1 CM039047.1 98.85 True local misassembly 7522945 7524432 4349718 4351205 NC_060938.1 CM039047.1 99.46 True indel: indel (<= 5bp) 7524434 7538462 4351206 4365234 NC_060938.1 CM039047.1 99.66 True indel: indel (<= 5bp) 7538464 7543330 4365235 4370101 NC_060938.1 CM039047.1 99.9 True indel: indel (<= 5bp) 7543332 7545778 4370102 4372548 NC_060938.1 CM039047.1 99.76 True local misassembly 7545267 7555969 4372549 4383251 NC_060938.1 CM039047.1 99.77 True translocation 8533167 8862424 4712320 4383252 NC_060945.1 CM039047.1 99.36 True translocation 7882083 7895532 4712321 4725770 NC_060938.1 CM039047.1 99.84 True indel: indel (<= 5bp) 7895533 7908758 4725772 4738997 NC_060938.1 CM039047.1 99.77 True indel: indel (<= 5bp) 7908759 7921941 4739000 4752182 NC_060938.1 CM039047.1 99.82 True indel: indel (<= 5bp) 7921942 7922473 4752188 4752719 NC_060938.1 CM039047.1 99.44 True indel: indel (> 5bp) 7922724 7923336 4752955 4753567 NC_060938.1 CM039047.1 100.0 True indel: indel (> 5bp) 7923590 7924687 4753806 4754903 NC_060938.1 CM039047.1 99.73 True indel: indel (<= 5bp) 7924693 7927793 4754904 4758004 NC_060938.1 CM039047.1 99.77 True indel: indel (> 5bp) 7927858 7929704 4758099 4759945 NC_060938.1 CM039047.1 99.68 True local misassembly 7930298 7931056 4760524 4761282 NC_060938.1 CM039047.1 99.74 True indel: indel (<= 5bp) 7931062 7931818 4761283 4762039 NC_060938.1 CM039047.1 99.87 True local misassembly 7932462 7936315 4762633 4766486 NC_060938.1 CM039047.1 99.95 True indel: indel (<= 5bp) 7936316 7951752 4766491 4781927 NC_060938.1 CM039047.1 99.7 True indel: indel (<= 5bp) 7951753 7957993 4781929 4788169 NC_060938.1 CM039047.1 99.78 True indel: indel (> 5bp) 7957994 7971869 4788187 4802062 NC_060938.1 CM039047.1 99.8 True indel: indel (<= 5bp) 7971870 7974377 4802064 4804571 NC_060938.1 CM039047.1 99.84 True indel: indel (<= 5bp) 7974379 7976051 4804572 4806244 NC_060938.1 CM039047.1 99.76 True indel: indel (<= 5bp) 7976054 7976857 4806245 4807048 NC_060938.1 CM039047.1 99.75 True indel: stretch of mismatches 7977083 7981235 4807274 4811426 NC_060938.1 CM039047.1 99.76 True local misassembly 7983469 7984134 4813665 4814330 NC_060938.1 CM039047.1 99.55 True indel: indel (<= 5bp) 7984136 7984744 4814331 4814939 NC_060938.1 CM039047.1 99.84 True indel: indel (> 5bp) 7984900 7985409 4815105 4815614 NC_060938.1 CM039047.1 99.61 True indel: indel (<= 5bp) 7985415 7986405 4815615 4816605 NC_060938.1 CM039047.1 99.7 True indel: indel (<= 5bp) 7986406 7987307 4816611 4817512 NC_060938.1 CM039047.1 99.89 True local misassembly 7987850 7988432 4818060 4818642 NC_060938.1 CM039047.1 99.83 True indel: indel (> 5bp) 7988800 7989378 4819020 4819598 NC_060938.1 CM039047.1 100.0 True indel: indel (> 5bp) 7989394 7990289 4819599 4820494 NC_060938.1 CM039047.1 99.67 True indel: indel (<= 5bp) 7990290 7991004 4820500 4821214 NC_060938.1 CM039047.1 99.44 True indel: indel (> 5bp) 7991402 7992305 4821592 4822495 NC_060938.1 CM039047.1 99.89 True indel: indel (> 5bp) 7992306 7993487 4822506 4823687 NC_060938.1 CM039047.1 99.83 True indel: indel (<= 5bp) 7993489 7994020 4823688 4824219 NC_060938.1 CM039047.1 99.81 True indel: indel (<= 5bp) 7994095 7994616 4824289 4824810 NC_060938.1 CM039047.1 99.62 True indel: indel (> 5bp) 7995028 7996537 4825212 4826721 NC_060938.1 CM039047.1 99.87 True local misassembly 7997143 7998798 4827322 4828977 NC_060938.1 CM039047.1 99.7 True indel: indel (<= 5bp) 7998804 7999878 4828978 4830052 NC_060938.1 CM039047.1 99.53 True local misassembly 8000803 8001897 4830977 4832071 NC_060938.1 CM039047.1 99.36 True indel: indel (> 5bp) 8001898 8002514 4832082 4832698 NC_060938.1 CM039047.1 99.68 True indel: indel (> 5bp) 8002855 8003422 4833054 4833621 NC_060938.1 CM039047.1 99.82 True indel: indel (<= 5bp) 8003423 8004311 4833625 4834513 NC_060938.1 CM039047.1 99.44 True relocation, inconsistency = -11105 8004491 8005196 4845798 4846503 NC_060938.1 CM039047.1 99.86 True indel: indel (> 5bp) 8005217 8006022 4846504 4847309 NC_060938.1 CM039047.1 99.88 True indel: indel (<= 5bp) 8006032 8027349 4847317 4868634 NC_060938.1 CM039047.1 99.77 True indel: indel (> 5bp) 8027350 8036956 4868717 4878323 NC_060938.1 CM039047.1 99.78 True local misassembly 8036957 8040637 4880369 4884049 NC_060938.1 CM039047.1 99.76 True indel: indel (<= 5bp) 8040638 8066954 4884051 4910367 NC_060938.1 CM039047.1 99.78 True local misassembly 8066955 8083306 4910709 4927060 NC_060938.1 CM039047.1 99.77 True indel: indel (<= 5bp) 8083312 8090581 4927061 4934330 NC_060938.1 CM039047.1 99.67 True indel: indel (<= 5bp) 8090586 8097725 4934331 4941470 NC_060938.1 CM039047.1 99.86 True indel: indel (<= 5bp) 8097727 8103997 4941471 4947741 NC_060938.1 CM039047.1 99.82 True indel: indel (<= 5bp) 8104000 8112591 4947742 4956333 NC_060938.1 CM039047.1 99.8 True indel: indel (<= 5bp) 8112594 8114879 4956334 4958619 NC_060938.1 CM039047.1 99.83 True indel: indel (<= 5bp) 8114881 8116184 4958620 4959923 NC_060938.1 CM039047.1 100.0 True indel: indel (<= 5bp) 8116185 8118194 4959925 4961934 NC_060938.1 CM039047.1 99.8 True indel: indel (<= 5bp) 8118195 8123264 4961936 4967005 NC_060938.1 CM039047.1 99.66 True indel: indel (<= 5bp) 8123265 8133570 4967007 4977312 NC_060938.1 CM039047.1 99.75 True local misassembly 8133571 8149231 4977826 4993486 NC_060938.1 CM039047.1 99.67 True translocation 8227830 8230110 4995767 4993487 NC_060945.1 CM039047.1 97.5 True indel: indel (<= 5bp) 8227107 8227828 4996489 4995768 NC_060945.1 CM039047.1 98.75 True local misassembly 8226197 8226934 4997227 4996490 NC_060945.1 CM039047.1 98.92 True indel: indel (<= 5bp) 8223915 8226195 4999508 4997228 NC_060945.1 CM039047.1 97.72 True indel: indel (<= 5bp) 8223192 8223913 5000230 4999509 NC_060945.1 CM039047.1 98.48 True local misassembly 8226197 8226934 5000968 5000231 NC_060945.1 CM039047.1 99.05 True indel: indel (<= 5bp) 8223915 8226195 5003249 5000969 NC_060945.1 CM039047.1 97.76 True indel: indel (<= 5bp) 8223192 8223913 5003971 5003250 NC_060945.1 CM039047.1 98.61 True local misassembly 8226197 8226934 5004709 5003972 NC_060945.1 CM039047.1 99.05 True indel: indel (<= 5bp) 8223915 8226195 5006990 5004710 NC_060945.1 CM039047.1 97.63 True indel: indel (<= 5bp) 8223192 8223913 5007712 5006991 NC_060945.1 CM039047.1 98.61 True local misassembly 8226197 8226934 5008450 5007713 NC_060945.1 CM039047.1 99.19 True indel: indel (<= 5bp) 8223915 8226195 5010731 5008451 NC_060945.1 CM039047.1 97.68 True indel: indel (<= 5bp) 8223192 8223913 5011453 5010732 NC_060945.1 CM039047.1 98.48 True local misassembly 8226197 8226934 5012191 5011454 NC_060945.1 CM039047.1 99.05 True indel: indel (<= 5bp) 8223915 8226195 5014472 5012192 NC_060945.1 CM039047.1 97.63 True indel: indel (<= 5bp) 8223192 8223913 5015194 5014473 NC_060945.1 CM039047.1 98.48 True local misassembly 8226197 8226934 5015932 5015195 NC_060945.1 CM039047.1 99.19 True indel: indel (<= 5bp) 8223915 8226195 5018213 5015933 NC_060945.1 CM039047.1 97.63 True indel: indel (<= 5bp) 8223192 8223913 5018935 5018214 NC_060945.1 CM039047.1 98.61 True local misassembly 8226197 8226934 5019673 5018936 NC_060945.1 CM039047.1 99.19 True indel: indel (<= 5bp) 8223915 8226195 5021954 5019674 NC_060945.1 CM039047.1 97.63 True indel: indel (<= 5bp) 8223192 8223913 5022676 5021955 NC_060945.1 CM039047.1 98.48 True local misassembly 8222282 8223019 5023414 5022677 NC_060945.1 CM039047.1 99.19 True indel: indel (<= 5bp) 8220000 8222280 5025695 5023415 NC_060945.1 CM039047.1 97.59 True indel: indel (<= 5bp) 8219277 8219998 5026417 5025696 NC_060945.1 CM039047.1 98.89 True local misassembly 8218367 8219104 5027155 5026418 NC_060945.1 CM039047.1 99.05 True indel: indel (<= 5bp) 8216085 8218365 5029436 5027156 NC_060945.1 CM039047.1 97.54 True indel: indel (<= 5bp) 8215362 8216083 5030158 5029437 NC_060945.1 CM039047.1 98.75 True local misassembly 8210205 8210942 5030896 5030159 NC_060945.1 CM039047.1 98.92 True indel: indel (<= 5bp) 8207923 8210203 5033177 5030897 NC_060945.1 CM039047.1 97.72 True translocation 8183638 8285274 5033463 5134948 NC_060938.1 CM039047.1 97.55 True translocation 8123774 8126850 5138005 5134949 NC_060945.1 CM039047.1 98.4 True translocation 8285280 8775811 5138006 5629494 NC_060938.1 CM039047.1 99.52 True local misassembly 8774879 8965738 5629557 5819979 NC_060938.1 CM039047.1 99.03 True translocation 11766281 11780599 5819980 5834291 NC_060946.1 CM039047.1 98.62 True indel: indel (<= 5bp) 11780699 11787640 5834390 5841332 NC_060946.1 CM039047.1 98.22 True translocation 8986418 9141136 5841333 5996533 NC_060938.1 CM039047.1 98.45 True local misassembly 9142870 9163382 5996634 6017138 NC_060938.1 CM039047.1 96.91 True relocation, inconsistency = -20613 9142870 9159174 6017239 6033605 NC_060938.1 CM039047.1 96.95 True relocation, inconsistency = -22396 9136779 9168632 6033606 6065310 NC_060938.1 CM039047.1 96.48 True relocation, inconsistency = 27437 9196070 9773530 6065311 6644279 NC_060938.1 CM039047.1 99.28 True translocation 12461520 12788632 6644280 6971338 NC_060946.1 CM039047.1 99.48 True translocation 10090857 10096402 6971339 6976881 NC_060938.1 CM039047.1 99.74 True relocation, inconsistency = 20958 10117361 10126299 6976882 6985824 NC_060938.1 CM039047.1 97.08 True translocation 15336312 15338818 6985825 6988330 NC_060946.1 CM039047.1 97.08 True translocation 10168379 10169292 6988379 6989292 NC_060938.1 CM039047.1 98.91 True local misassembly 10169635 10171158 6989293 6990816 NC_060938.1 CM039047.1 95.67 True translocation 12940700 12953142 6990860 7003301 NC_060946.1 CM039047.1 96.67 True relocation, inconsistency = -9540 12943924 12961893 7003623 7021570 NC_060946.1 CM039047.1 96.63 True translocation 10099206 10101511 7021571 7023878 NC_060938.1 CM039047.1 97.04 True relocation, inconsistency = 10396 10111908 10126184 7023879 7038160 NC_060938.1 CM039047.1 96.71 True translocation 15552826 15554485 7038161 7039823 NC_060946.1 CM039047.1 98.25 True translocation 10330131 10335473 7039824 7045166 NC_060938.1 CM039047.1 98.56 True relocation, inconsistency = -213193 10122837 10135724 7045723 7058607 NC_060938.1 CM039047.1 96.67 True relocation, inconsistency = 183210 10318935 10319504 7058608 7059177 NC_060938.1 CM039047.1 96.41 True translocation 13002738 13003842 7059356 7060460 NC_060946.1 CM039047.1 96.89 True translocation 10294901 10313600 7060461 7079167 NC_060938.1 CM039047.1 96.76 True translocation 12943163 12947862 7079168 7083865 NC_060946.1 CM039047.1 96.7 True translocation 12511008 12518460 7083866 7091318 NC_060938.1 CM039047.1 98.36 True relocation, inconsistency = -2188633 10329828 10330604 7091319 7092095 NC_060938.1 CM039047.1 98.21 True translocation 15579169 15584661 7092096 7097593 NC_060946.1 CM039047.1 98.35 True relocation, inconsistency = -2587306 12997356 13008810 7097594 7109057 NC_060946.1 CM039047.1 97.09 True relocation, inconsistency = 1252284 14261095 14265400 7109058 7113360 NC_060946.1 CM039047.1 97.24 True translocation 10098375 10106954 7113440 7122029 NC_060938.1 CM039047.1 97.01 True translocation 15434073 15435023 7122030 7122980 NC_060946.1 CM039047.1 98.11 True relocation, inconsistency = -456318 14978706 14986904 7122981 7131185 NC_060946.1 CM039047.1 96.83 True translocation 10136728 10145775 7131186 7140242 NC_060938.1 CM039047.1 98.31 True relocation, inconsistency = 27601 10173977 10177928 7140843 7144794 NC_060938.1 CM039047.1 98.39 True relocation, inconsistency = 856035 11033964 11040792 7144795 7151624 NC_060938.1 CM039047.1 98.68 True relocation, inconsistency = -904085 10136708 10143299 7151625 7158218 NC_060938.1 CM039047.1 98.27 True relocation, inconsistency = 357437 10500737 10511386 7158219 7168868 NC_060938.1 CM039047.1 98.78 True relocation, inconsistency = 1989157 12500544 12505039 7168869 7173364 NC_060938.1 CM039047.1 98.81 True relocation, inconsistency = -2136467 10368573 10380466 7173365 7185247 NC_060938.1 CM039047.1 98.75 True relocation, inconsistency = -90314 10290153 10290747 7185248 7185842 NC_060938.1 CM039047.1 98.85 True local misassembly 10285292 10295609 7185843 7196161 NC_060938.1 CM039047.1 98.78 True relocation, inconsistency = -158005 10137605 10140797 7196162 7199354 NC_060938.1 CM039047.1 98.36 True local misassembly 10136708 10144850 7199355 7207499 NC_060938.1 CM039047.1 98.51 True relocation, inconsistency = 227859 10372710 10385923 7207500 7220713 NC_060938.1 CM039047.1 99.16 True relocation, inconsistency = -244227 10141697 10143495 7220714 7222512 NC_060938.1 CM039047.1 98.2 True local misassembly 10138040 10144859 7222513 7229332 NC_060938.1 CM039047.1 98.54 True relocation, inconsistency = 426993 10571853 10582321 7229333 7239805 NC_060938.1 CM039047.1 98.87 True relocation, inconsistency = -444717 10137605 10145775 7239806 7247983 NC_060938.1 CM039047.1 98.36 True relocation, inconsistency = 425636 10571844 10582321 7248416 7258901 NC_060938.1 CM039047.1 98.9 True relocation, inconsistency = -351653 10230908 10244308 7259141 7272541 NC_060938.1 CM039047.1 98.81 True relocation, inconsistency = 783743 11028052 11033938 7272542 7278428 NC_060938.1 CM039047.1 98.83 True relocation, inconsistency = 858801 11892740 11899101 7278429 7284794 NC_060938.1 CM039047.1 98.95 True relocation, inconsistency = -140427 11758675 11761207 7284795 7287328 NC_060938.1 CM039047.1 99.12 True relocation, inconsistency = 187146 11948366 11951035 7287341 7290010 NC_060938.1 CM039047.1 99.21 True relocation, inconsistency = -918817 11032219 11039942 7290011 7297746 NC_060938.1 CM039047.1 98.5 True relocation, inconsistency = -801475 10238468 10241395 7297747 7300674 NC_060938.1 CM039047.1 98.9 True translocation 15655091 15663274 7300675 7308856 NC_060946.1 CM039047.1 98.32 True relocation, inconsistency = -8184 15655091 15663543 7308857 7317307 NC_060946.1 CM039047.1 98.39 True translocation 11704588 11709609 7320382 7325406 NC_060938.1 CM039047.1 99.24 True relocation, inconsistency = -1577458 10136708 10143060 7329963 7336315 NC_060938.1 CM039047.1 98.46 True relocation, inconsistency = 353345 10496837 10508681 7336747 7348588 NC_060938.1 CM039047.1 98.6 True local misassembly 10504590 10506308 7348589 7350307 NC_060938.1 CM039047.1 98.83 True translocation, scaffold gap is present 17060439 17070385 7362239 7352293 NC_060942.1 CM039047.1 99.65 True relocation, inconsistency = -12208 17060439 17071988 7374448 7362898 NC_060942.1 CM039047.1 99.53 True translocation 10380903 10383894 7374803 7377793 NC_060938.1 CM039047.1 98.96 True relocation, inconsistency = 651676 11035571 11041691 7377794 7383913 NC_060938.1 CM039047.1 98.76 True local misassembly 11037600 11039389 7383914 7385702 NC_060938.1 CM039047.1 98.71 True local misassembly 11033934 11040570 7385703 7392338 NC_060938.1 CM039047.1 98.63 True relocation, inconsistency = 1098848 12139419 12142694 7392339 7395615 NC_060938.1 CM039047.1 98.81 True relocation, inconsistency = -1767575 10375120 10380467 7395616 7400962 NC_060938.1 CM039047.1 99.21 True relocation, inconsistency = 169130 10549837 10557225 7401202 7408590 NC_060938.1 CM039047.1 98.82 True relocation, inconsistency = -185498 10371728 10379528 7408591 7416389 NC_060938.1 CM039047.1 99.02 True relocation, inconsistency = -129343 10250186 10258192 7416390 7424392 NC_060938.1 CM039047.1 98.69 True relocation, inconsistency = 2205798 12463991 12477730 7424393 7438123 NC_060938.1 CM039047.1 98.78 True translocation 15474472 15477994 7438124 7441646 NC_060946.1 CM039047.1 97.97 True translocation 10502251 10507657 7442253 7447657 NC_060938.1 CM039047.1 98.65 True fake: not a misassembly (possible transposable element) 15068232 15069038 7447658 7448464 NC_060946.1 CM039047.1 98.31 True fake: not a misassembly (possible transposable element) 10502251 10507657 7449071 7454471 NC_060938.1 CM039047.1 98.52 True local misassembly 10502251 10506891 7455885 7460523 NC_060938.1 CM039047.1 98.52 True relocation, inconsistency = 43644 10550536 10557751 7460524 7467737 NC_060938.1 CM039047.1 98.91 True relocation, inconsistency = 535378 11093130 11094762 7467738 7469370 NC_060938.1 CM039047.1 99.09 True relocation, inconsistency = -858399 10236364 10244104 7469371 7477111 NC_060938.1 CM039047.1 98.75 True local misassembly 10238649 10244104 7477112 7482567 NC_060938.1 CM039047.1 98.72 True relocation, inconsistency = 2209882 12454430 12464077 7483011 7492657 NC_060938.1 CM039047.1 98.71 True relocation, inconsistency = -2226250 10237828 10244104 7492658 7498933 NC_060938.1 CM039047.1 98.73 True translocation 14145921 14151237 7500071 7505388 NC_060946.1 CM039047.1 97.88 True translocation 11049305 11056629 7505389 7512713 NC_060938.1 CM039047.1 98.74 True local misassembly 11049810 11056531 7512714 7519435 NC_060938.1 CM039047.1 98.77 True relocation, inconsistency = -503004 10553528 10557162 7519436 7523069 NC_060938.1 CM039047.1 98.68 True relocation, inconsistency = -321657 10235506 10242015 7523070 7529577 NC_060938.1 CM039047.1 98.77 True local misassembly 10236560 10241819 7529578 7534837 NC_060938.1 CM039047.1 98.58 True relocation, inconsistency = 258917 10500737 10508477 7534838 7542578 NC_060938.1 CM039047.1 98.6 True relocation, inconsistency = -272557 10236364 10244104 7543022 7550761 NC_060938.1 CM039047.1 98.68 True relocation, inconsistency = -8184 10236364 10244104 7551205 7558945 NC_060938.1 CM039047.1 98.76 True translocation 15072995 15078233 7560162 7565400 NC_060946.1 CM039047.1 98.11 True translocation 11049305 11056531 7565401 7572628 NC_060938.1 CM039047.1 98.69 True relocation, inconsistency = -526191 10530937 10538628 7573225 7580916 NC_060938.1 CM039047.1 98.69 True relocation, inconsistency = 13640 10552269 10557781 7580917 7586429 NC_060938.1 CM039047.1 98.77 True relocation, inconsistency = -279218 10278564 10280166 7586430 7588032 NC_060938.1 CM039047.1 97.59 True relocation, inconsistency = 216478 10496645 10506192 7588033 7597579 NC_060938.1 CM039047.1 98.55 True relocation, inconsistency = -9548 10496645 10500736 7597580 7601671 NC_060938.1 CM039047.1 98.73 True local misassembly 10496645 10507669 7601672 7612694 NC_060938.1 CM039047.1 98.52 True relocation, inconsistency = -297109 10210665 10212166 7612799 7614299 NC_060938.1 CM039047.1 99.09 True relocation, inconsistency = 157983 10370150 10387639 7614300 7631788 NC_060938.1 CM039047.1 99.05 True relocation, inconsistency = -130711 10257033 10264387 7631893 7639244 NC_060938.1 CM039047.1 98.91 True local misassembly 10257568 10264387 7639245 7646061 NC_060938.1 CM039047.1 98.78 True relocation, inconsistency = -28636 10236364 10243538 7646674 7653847 NC_060938.1 CM039047.1 98.89 True local misassembly 10250355 10264387 7653848 7667883 NC_060938.1 CM039047.1 98.9 True relocation, inconsistency = 234373 10498761 10506761 7667884 7675882 NC_060938.1 CM039047.1 98.48 True relocation, inconsistency = 1959149 12465911 12476822 7675883 7686788 NC_060938.1 CM039047.1 98.87 True relocation, inconsistency = -2017801 10459022 10470489 7686789 7698253 NC_060938.1 CM039047.1 98.82 True relocation, inconsistency = -233001 10237489 10244104 7698254 7704868 NC_060938.1 CM039047.1 98.62 True relocation, inconsistency = 1491214 11735505 11740420 7705055 7709972 NC_060938.1 CM039047.1 98.67 True relocation, inconsistency = -1448095 10292326 10300391 7709973 7718041 NC_060938.1 CM039047.1 97.87 True relocation, inconsistency = 12261 10312653 10318369 7718042 7723763 NC_060938.1 CM039047.1 98.09 True relocation, inconsistency = 2152470 12470840 12475608 7723764 7728530 NC_060938.1 CM039047.1 98.62 True relocation, inconsistency = -1923009 10552600 10554627 7728531 7730558 NC_060938.1 CM039047.1 99.18 True relocation, inconsistency = -55240 10499388 10508477 7730559 7739646 NC_060938.1 CM039047.1 98.69 True relocation, inconsistency = 1963241 12471719 12477174 7739647 7745102 NC_060938.1 CM039047.1 98.67 True relocation, inconsistency = -2138165 10339010 10342376 7745103 7748469 NC_060938.1 CM039047.1 98.85 True relocation, inconsistency = -105817 10236560 10244104 7748470 7756014 NC_060938.1 CM039047.1 98.79 True relocation, inconsistency = 2182608 12426713 12432168 7756015 7761470 NC_060938.1 CM039047.1 98.71 True translocation 14721934 14728642 7763401 7770105 NC_060946.1 CM039047.1 98.45 True translocation 12471833 12476990 7770106 7775263 NC_060938.1 CM039047.1 98.99 True relocation, inconsistency = -2111915 10365076 10369981 7775264 7780169 NC_060938.1 CM039047.1 99.08 True relocation, inconsistency = -117071 10252911 10264387 7780170 7791642 NC_060938.1 CM039047.1 98.93 True relocation, inconsistency = 106159 10370547 10378079 7791643 7799172 NC_060938.1 CM039047.1 99.14 True relocation, inconsistency = 2217622 12595702 12600261 7799173 7803732 NC_060938.1 CM039047.1 98.39 True relocation, inconsistency = -2409705 10190557 10196589 7803733 7809765 NC_060938.1 CM039047.1 98.74 True translocation 15697579 15705750 7809766 7817936 NC_060946.1 CM039047.1 98.1 True relocation, inconsistency = -8182 15697569 15703278 7817937 7823646 NC_060946.1 CM039047.1 98.0 True translocation 10230937 10244104 7823647 7836812 NC_060938.1 CM039047.1 98.72 True relocation, inconsistency = 134795 10378900 10384985 7836813 7842898 NC_060938.1 CM039047.1 98.84 True relocation, inconsistency = 662586 11047572 11056629 7842899 7851956 NC_060938.1 CM039047.1 98.84 True translocation 15170785 15176602 7851957 7857776 NC_060946.1 CM039047.1 98.77 True translocation 10496645 10505895 7859080 7868330 NC_060938.1 CM039047.1 98.68 True relocation, inconsistency = 1896422 12402318 12407624 7868331 7873640 NC_060938.1 CM039047.1 98.42 True relocation, inconsistency = -1882778 10525285 10529494 7874079 7878288 NC_060938.1 CM039047.1 98.88 True translocation 14719544 14722729 7878289 7881474 NC_060946.1 CM039047.1 98.65 True translocation 10370372 10383195 7881475 7894297 NC_060938.1 CM039047.1 99.11 True relocation, inconsistency = 334084 10717280 10720433 7894298 7897451 NC_060938.1 CM039047.1 98.57 True local misassembly 10714978 10723543 7897452 7906013 NC_060938.1 CM039047.1 98.93 True relocation, inconsistency = -471615 10251929 10261004 7906014 7915087 NC_060938.1 CM039047.1 98.68 True relocation, inconsistency = 117072 10378334 10388651 7915345 7925658 NC_060938.1 CM039047.1 99.21 True translocation 12913137 12918360 7925898 7931125 NC_060946.1 CM039047.1 97.93 True relocation, inconsistency = 2779208 15697569 15707006 7931126 7940562 NC_060946.1 CM039047.1 98.09 True translocation 10498147 10500763 7941038 7943654 NC_060938.1 CM039047.1 98.51 True local misassembly 10496674 10507669 7943655 7954648 NC_060938.1 CM039047.1 98.56 True relocation, inconsistency = 1248656 11756409 11761854 7954732 7960178 NC_060938.1 CM039047.1 98.4 True relocation, inconsistency = -1380961 10380894 10388651 7960179 7967936 NC_060938.1 CM039047.1 98.79 True relocation, inconsistency = 99570 10488222 10490330 7967937 7970045 NC_060938.1 CM039047.1 98.75 True local misassembly 10487603 10494837 7970046 7977280 NC_060938.1 CM039047.1 98.7 True relocation, inconsistency = 54556 10549837 10555429 7977724 7983316 NC_060938.1 CM039047.1 98.44 True local misassembly 10549837 10553928 7983522 7987613 NC_060938.1 CM039047.1 98.51 True local misassembly 10549837 10557780 7987614 7995558 NC_060938.1 CM039047.1 98.65 True relocation, inconsistency = -55920 10501861 10508477 7995559 8002170 NC_060938.1 CM039047.1 98.62 True relocation, inconsistency = -139124 10369991 10378099 8002808 8010915 NC_060938.1 CM039047.1 98.88 True relocation, inconsistency = -125255 10252845 10258179 8010916 8016250 NC_060938.1 CM039047.1 98.95 True relocation, inconsistency = 293021 10551201 10557781 8016251 8022831 NC_060938.1 CM039047.1 98.65 True relocation, inconsistency = 1200920 11758702 11762769 8022832 8026900 NC_060938.1 CM039047.1 98.93 True relocation, inconsistency = -1385053 10378166 10386283 8027350 8035467 NC_060938.1 CM039047.1 98.99 True relocation, inconsistency = 1370050 11756409 11763950 8035543 8043087 NC_060938.1 CM039047.1 98.81 True relocation, inconsistency = -1418121 10345830 10349514 8043088 8046772 NC_060938.1 CM039047.1 98.61 True local misassembly 10345423 10352087 8046773 8053437 NC_060938.1 CM039047.1 98.56 True relocation, inconsistency = 18066 10370154 10378099 8053438 8061383 NC_060938.1 CM039047.1 99.03 True local misassembly 10374008 10376831 8061384 8064207 NC_060938.1 CM039047.1 98.94 True relocation, inconsistency = 94114 10470946 10478673 8064208 8071935 NC_060938.1 CM039047.1 99.06 True relocation, inconsistency = -338341 10140333 10142122 8071936 8073725 NC_060938.1 CM039047.1 98.55 True relocation, inconsistency = 891811 11033934 11041691 8073726 8081482 NC_060938.1 CM039047.1 98.93 True relocation, inconsistency = -842052 10201219 10206083 8083062 8087925 NC_060938.1 CM039047.1 98.97 True translocation 12985441 12992175 8087926 8094669 NC_060946.1 CM039047.1 97.49 True translocation 10255104 10259304 8094670 8098870 NC_060938.1 CM039047.1 98.87 True relocation, inconsistency = 787841 11047740 11051831 8099465 8103556 NC_060938.1 CM039047.1 98.78 True local misassembly 11047740 11054484 8103557 8110301 NC_060938.1 CM039047.1 98.74 True relocation, inconsistency = 1501158 12555643 12559519 8110302 8114178 NC_060938.1 CM039047.1 98.72 True local misassembly 12555428 12559636 8114179 8118387 NC_060938.1 CM039047.1 98.7 True relocation, inconsistency = -2043718 10515919 10518510 8118388 8120979 NC_060938.1 CM039047.1 98.67 True translocation 15192612 15201029 8120980 8129398 NC_060946.1 CM039047.1 98.44 True translocation 12449256 12452886 8129399 8133029 NC_060938.1 CM039047.1 98.62 True relocation, inconsistency = 106389 12559276 12567341 8133030 8141094 NC_060938.1 CM039047.1 98.38 True local misassembly 12561886 12565480 8141095 8144687 NC_060938.1 CM039047.1 98.45 True relocation, inconsistency = -114573 12450908 12459442 8144688 8153222 NC_060938.1 CM039047.1 99.06 True relocation, inconsistency = -13638 12445805 12447723 8153223 8155143 NC_060938.1 CM039047.1 99.11 True relocation, inconsistency = -1413863 11033943 11041691 8155226 8162970 NC_060938.1 CM039047.1 98.75 True relocation, inconsistency = 1546850 12589613 12591704 8164042 8166133 NC_060938.1 CM039047.1 98.49 True relocation, inconsistency = -2112596 10479109 10486481 8166134 8173506 NC_060938.1 CM039047.1 98.52 True relocation, inconsistency = 1941761 12428243 12432736 8173507 8178000 NC_060938.1 CM039047.1 98.74 True translocation 12984705 12992188 8180960 8188452 NC_060946.1 CM039047.1 97.58 True translocation 10504494 10508681 8188453 8192640 NC_060938.1 CM039047.1 98.76 True relocation, inconsistency = -81838 10427265 10437720 8193062 8203515 NC_060938.1 CM039047.1 98.87 True relocation, inconsistency = -34100 10403621 10406818 8203516 8206713 NC_060938.1 CM039047.1 99.01 True relocation, inconsistency = -207087 10199732 10203809 8206714 8210791 NC_060938.1 CM039047.1 98.84 True local misassembly 10199718 10207915 8210792 8218989 NC_060938.1 CM039047.1 98.78 True relocation, inconsistency = -8184 10199732 10215664 8218990 8234922 NC_060938.1 CM039047.1 98.92 True relocation, inconsistency = 190719 10406782 10413128 8235321 8241667 NC_060938.1 CM039047.1 98.87 True translocation 13900777 13907563 8241668 8248455 NC_060946.1 CM039047.1 98.66 True relocation, inconsistency = -858136 13049526 13057686 8248554 8256716 NC_060946.1 CM039047.1 97.7 True translocation 10215635 10221576 8256717 8262658 NC_060938.1 CM039047.1 98.88 True relocation, inconsistency = 145707 10367284 10374103 8262659 8269478 NC_060938.1 CM039047.1 98.87 True relocation, inconsistency = -37162 10336942 10346033 8269479 8278570 NC_060938.1 CM039047.1 98.66 True local misassembly 10340011 10345464 8279368 8284821 NC_060938.1 CM039047.1 98.73 True translocation 14144419 14153111 8284822 8293515 NC_060946.1 CM039047.1 98.37 True relocation, inconsistency = 961426 15114538 15118105 8293516 8297083 NC_060946.1 CM039047.1 98.11 True relocation, inconsistency = -947788 14170318 14178044 8297084 8304810 NC_060946.1 CM039047.1 98.06 True relocation, inconsistency = 1252752 15431135 15437725 8305149 8311738 NC_060946.1 CM039047.1 98.06 True translocation 12590500 12602698 8311899 8324093 NC_060938.1 CM039047.1 98.61 True local misassembly 12595879 12599795 8324094 8328010 NC_060938.1 CM039047.1 98.72 True local misassembly 12592976 12602698 8328011 8337731 NC_060938.1 CM039047.1 98.62 True local misassembly 12597243 12599479 8337732 8339967 NC_060938.1 CM039047.1 98.47 True relocation, inconsistency = 21828 12621308 12625398 8339968 8344059 NC_060938.1 CM039047.1 98.43 True local misassembly 12621308 12637251 8344060 8360006 NC_060938.1 CM039047.1 98.44 True relocation, inconsistency = -78432 12558820 12561153 8360007 8362341 NC_060938.1 CM039047.1 98.57 True local misassembly 12557062 12568095 8362342 8373374 NC_060938.1 CM039047.1 98.6 True relocation, inconsistency = 62064 12630160 12638757 8373375 8381964 NC_060938.1 CM039047.1 98.05 True local misassembly 12642850 12644046 8381965 8383161 NC_060938.1 CM039047.1 98.11 True relocation, inconsistency = -85252 12558795 12560846 8383162 8385213 NC_060938.1 CM039047.1 98.29 True relocation, inconsistency = 18414 12579261 12586594 8385214 8392542 NC_060938.1 CM039047.1 98.65 True translocation 15428525 15437985 8392543 8402002 NC_060946.1 CM039047.1 97.91 True relocation, inconsistency = 119457 15557443 15560212 8402003 8404772 NC_060946.1 CM039047.1 98.31 True local misassembly 15554757 15560616 8404773 8410632 NC_060946.1 CM039047.1 98.31 True relocation, inconsistency = -131733 15428884 15436100 8410633 8417849 NC_060946.1 CM039047.1 97.98 True translocation 12621455 12623345 8417850 8419740 NC_060938.1 CM039047.1 98.61 True translocation 15570747 15575747 8419741 8424742 NC_060946.1 CM039047.1 98.3 True translocation 10257033 10263763 8424953 8431683 NC_060938.1 CM039047.1 98.84 True relocation, inconsistency = 478435 10745368 10750664 8434853 8440148 NC_060938.1 CM039047.1 98.62 True relocation, inconsistency = -653469 10097291 10104885 8440244 8447848 NC_060938.1 CM039047.1 96.81 True translocation 15301417 15303040 8447849 8449472 NC_060946.1 CM039047.1 98.43 True translocation 12587604 12596695 8449473 8458564 NC_060938.1 CM039047.1 98.14 True translocation 13049526 13057686 8458586 8466748 NC_060946.1 CM039047.1 97.65 True translocation 11034842 11038469 8466749 8470376 NC_060938.1 CM039047.1 98.76 True relocation, inconsistency = 1573450 12611920 12618356 8470377 8476811 NC_060938.1 CM039047.1 98.48 True relocation, inconsistency = -27964 12590435 12602877 8476854 8489292 NC_060938.1 CM039047.1 98.79 True local misassembly 12598786 12602775 8489293 8493282 NC_060938.1 CM039047.1 98.59 True relocation, inconsistency = -12276 12590500 12595744 8493283 8498527 NC_060938.1 CM039047.1 98.49 True local misassembly 12590289 12602712 8498528 8510950 NC_060938.1 CM039047.1 98.36 True relocation, inconsistency = -10912 12591801 12601085 8510951 8520232 NC_060938.1 CM039047.1 98.38 True local misassembly 12607226 12621061 8520233 8534067 NC_060938.1 CM039047.1 98.38 True local misassembly 12624474 12627539 8534068 8537133 NC_060938.1 CM039047.1 98.43 True relocation, inconsistency = -40923 12586617 12602877 8537134 8553395 NC_060938.1 CM039047.1 98.59 True local misassembly 12598786 12599479 8553396 8554089 NC_060938.1 CM039047.1 98.61 True relocation, inconsistency = 21828 12621308 12638757 8554090 8571540 NC_060938.1 CM039047.1 98.41 True local misassembly 12644214 12645445 8571541 8572771 NC_060938.1 CM039047.1 98.35 True translocation 13805690 13807075 8572772 8574157 NC_060946.1 CM039047.1 98.82 True relocation, inconsistency = -821966 12985110 12994165 8574158 8583220 NC_060946.1 CM039047.1 97.77 True fake: not a misassembly (possible transposable element) 10123810 10124784 8583221 8584195 NC_060938.1 CM039047.1 98.06 True fake: not a misassembly (possible transposable element) 12988326 12994165 8584196 8590038 NC_060946.1 CM039047.1 97.91 True translocation 12561097 12564281 8590039 8593223 NC_060938.1 CM039047.1 98.29 True relocation, inconsistency = 59680 12624100 12625186 8593362 8594448 NC_060938.1 CM039047.1 98.53 True indel: indel (<= 5bp) 12625187 12625762 8594450 8595025 NC_060938.1 CM039047.1 98.17 True translocation 12914652 12921341 8595026 8601722 NC_060946.1 CM039047.1 97.96 True translocation 12629731 12638757 8601723 8610748 NC_060938.1 CM039047.1 98.6 True relocation, inconsistency = -8693 12630364 12638757 8611048 8619437 NC_060938.1 CM039047.1 98.55 True relocation, inconsistency = 31372 12670130 12670927 8619438 8620235 NC_060938.1 CM039047.1 98.22 True translocation 15087868 15092082 8620236 8624449 NC_060946.1 CM039047.1 97.69 True translocation 12666275 12669286 8624450 8627460 NC_060938.1 CM039047.1 98.47 True relocation, inconsistency = -46374 12622913 12631528 8627461 8636078 NC_060938.1 CM039047.1 98.5 True relocation, inconsistency = -48426 12583414 12584222 8636390 8637198 NC_060938.1 CM039047.1 99.26 True indel: indel (<= 5bp) 12584224 12586248 8637199 8639223 NC_060938.1 CM039047.1 98.96 True relocation, inconsistency = 41944 12628428 12632393 8639459 8643423 NC_060938.1 CM039047.1 98.49 True local misassembly 12639214 12649779 8643424 8653988 NC_060938.1 CM039047.1 98.48 True relocation, inconsistency = -73657 12576123 12588510 8653989 8666376 NC_060938.1 CM039047.1 98.81 True translocation 13046777 13050369 8666377 8669971 NC_060946.1 CM039047.1 98.06 True translocation 12558688 12561411 8669972 8672694 NC_060938.1 CM039047.1 98.35 True relocation, inconsistency = 29326 12590738 12601188 8672695 8683140 NC_060938.1 CM039047.1 98.55 True translocation 12896916 12903501 8683141 8689730 NC_060946.1 CM039047.1 97.45 True translocation 12590435 12601188 8690116 8700862 NC_060938.1 CM039047.1 98.51 True translocation 15209061 15214513 8700863 8706314 NC_060946.1 CM039047.1 97.65 True relocation, inconsistency = -1175539 14038990 14046171 8706330 8713511 NC_060946.1 CM039047.1 97.73 True translocation 12392227 12394880 8713512 8716170 NC_060938.1 CM039047.1 98.05 True translocation 15006175 15013752 8716171 8723746 NC_060946.1 CM039047.1 97.6 True relocation, inconsistency = 265577 15279330 15283360 8723747 8727777 NC_060946.1 CM039047.1 98.43 True relocation, inconsistency = -48745 15235918 15238642 8729080 8731806 NC_060946.1 CM039047.1 98.18 True local misassembly 15235918 15239120 8731807 8735011 NC_060946.1 CM039047.1 98.23 True translocation 12339068 12342814 8735012 8738759 NC_060938.1 CM039047.1 98.75 True relocation, inconsistency = 240698 12583513 12590663 8738760 8745906 NC_060938.1 CM039047.1 98.39 True translocation 13067610 13075423 8750946 8758761 NC_060946.1 CM039047.1 97.91 True relocation, inconsistency = 2394582 15470006 15480527 8758762 8769209 NC_060946.1 CM039047.1 97.29 True relocation, inconsistency = -47814 15432714 15456710 8769210 8793205 NC_060946.1 CM039047.1 97.75 True relocation, inconsistency = -2506692 12950599 12960385 8793786 8803567 NC_060946.1 CM039047.1 97.13 True local misassembly 12956771 12965342 8803698 8812269 NC_060946.1 CM039047.1 96.86 True translocation 12701156 12702979 8821662 8823484 NC_060938.1 CM039047.1 95.46 True local misassembly 12702352 12703034 8826961 8827643 NC_060938.1 CM039047.1 97.66 True local misassembly 12702352 12704899 8828331 8830878 NC_060938.1 CM039047.1 99.64 True translocation 15707554 15741165 8830879 8864489 NC_060946.1 CM039047.1 99.6 True translocation 12739535 13502064 8864490 9625908 NC_060938.1 CM039047.1 99.49 True translocation 16110791 16308122 9625909 9823554 NC_060946.1 CM039047.1 98.81 True local misassembly 16305187 16308122 9823555 9826492 NC_060946.1 CM039047.1 97.22 True translocation 13321807 13322634 9826493 9827320 NC_060938.1 CM039047.1 98.71 True relocation, inconsistency = 277520 13602161 13701058 9928190 9829327 NC_060938.1 CM039047.1 99.3 True relocation, scaffold gap is present, inconsistency = 130118 13423772 13471842 9928391 9976475 NC_060938.1 CM039047.1 99.36 True local misassembly 13472031 13477220 9976499 9982120 NC_060938.1 CM039047.1 97.86 True translocation 16086107 16157618 9982121 10053780 NC_060946.1 CM039047.1 98.7 True translocation 13543479 13852387 10362547 10053781 NC_060938.1 CM039047.1 99.35 True relocation, inconsistency = -60367 13482414 13603845 10362548 10483721 NC_060938.1 CM039047.1 99.32 True relocation, scaffold gap is present, inconsistency = -66373 13537687 13834180 10779821 10483936 NC_060938.1 CM039047.1 99.2 True indel: indel (> 5bp) 13435664 13537491 10881818 10780005 NC_060938.1 CM039047.1 99.82 True relocation, inconsistency = -720408 13858819 14156061 11175791 10881829 NC_060938.1 CM039047.1 98.43 True translocation 16157118 16175861 11175792 11194532 NC_060946.1 CM039047.1 99.04 True relocation, scaffold gap is present, inconsistency = -30743 16157118 16187660 11225182 11194733 NC_060946.1 CM039047.1 98.59 True translocation 13858819 14431621 11225183 11798753 NC_060938.1 CM039047.1 99.39 True local misassembly 14434866 16390641 11800786 13762176 NC_060938.1 CM039047.1 99.35 True indel: indel (> 5bp) 16390998 16702278 13762540 14074403 NC_060938.1 CM039047.1 99.57 True indel: indel (> 5bp) 16702619 24188412 14074765 21560407 NC_060938.1 CM039047.1 99.67 True local misassembly 24188541 28050822 21560636 25422570 NC_060938.1 CM039047.1 99.82 True local misassembly 28050965 28224773 25422872 25596052 NC_060938.1 CM039047.1 99.37 True local misassembly 28225264 28933977 25596357 26303551 NC_060938.1 CM039047.1 98.69 True indel: indel (<= 5bp) 28934071 30135975 26303647 27505494 NC_060938.1 CM039047.1 99.95 True local misassembly 30137697 30437909 27507918 27807860 NC_060938.1 CM039047.1 99.73 True indel: stretch of mismatches 30438135 31229640 27808086 28599488 NC_060938.1 CM039047.1 99.81 True indel: indel (> 5bp) 31229841 32289833 28599682 29654229 NC_060938.1 CM039047.1 99.28 True local misassembly 32290079 35034918 29655563 32401755 NC_060938.1 CM039047.1 99.52 True indel: indel (> 5bp) 35034922 39108210 32401825 36474260 NC_060938.1 CM039047.1 99.78 True local misassembly 39109041 40203577 36475134 37569868 NC_060938.1 CM039047.1 99.77 True indel: indel (> 5bp) 40203841 40244950 37570084 37611224 NC_060938.1 CM039047.1 99.66 True indel: indel (<= 5bp) 40245001 43137902 37611274 40497762 NC_060938.1 CM039047.1 99.55 True local misassembly 43138631 44279766 40498543 41639466 NC_060938.1 CM039047.1 99.78 True local misassembly 44279911 46737358 41639467 44096940 NC_060938.1 CM039047.1 99.77 True local misassembly 46738058 47556193 44097425 44915231 NC_060938.1 CM039047.1 99.77 True indel: indel (<= 5bp) 47556270 48397009 44915307 45756251 NC_060938.1 CM039047.1 99.82 True indel: indel (> 5bp) 48397049 53956269 45756285 51318509 NC_060938.1 CM039047.1 99.73 True local misassembly 53957718 54812565 51319924 52176880 NC_060938.1 CM039047.1 99.55 True inversion 54812566 54818123 52182435 52176881 NC_060938.1 CM039047.1 99.87 True inversion 54818124 63237192 52182436 60623536 NC_060938.1 CM039047.1 99.53 True local misassembly 63241264 68452715 60623562 65842279 NC_060938.1 CM039047.1 99.63 True indel: indel (<= 5bp) 68452848 70508888 65842414 67897812 NC_060938.1 CM039047.1 99.78 True local misassembly 70508964 70541957 67897977 67930967 NC_060938.1 CM039047.1 99.69 True local misassembly 70542487 71445547 67931510 68834167 NC_060938.1 CM039047.1 99.65 True indel: indel (> 5bp) 71445600 75672595 68834168 73057950 NC_060938.1 CM039047.1 99.48 True local misassembly 75673806 76887456 73058589 74276466 NC_060938.1 CM039047.1 99.5 True indel: indel (<= 5bp) 76887459 80525686 74276467 77903446 NC_060938.1 CM039047.1 99.49 True indel: indel (> 5bp) 80525765 83584668 77903482 80960469 NC_060938.1 CM039047.1 99.67 True local misassembly 83586248 84525246 80961791 81900608 NC_060938.1 CM039047.1 99.75 True indel: indel (> 5bp) 84525291 85022627 81900713 82398318 NC_060938.1 CM039047.1 99.63 True local misassembly 85022927 86776639 82398445 84153638 NC_060938.1 CM039047.1 99.64 True local misassembly 86779027 87949568 84155026 85330321 NC_060938.1 CM039047.1 99.35 True local misassembly 87949457 88372758 85330490 85753653 NC_060938.1 CM039047.1 99.78 True indel: indel (> 5bp) 88372837 94159351 85753752 91539071 NC_060938.1 CM039047.1 99.78 True local misassembly 94160774 94185552 91540379 91565164 NC_060938.1 CM039047.1 99.75 True local misassembly 94186004 94759808 91565910 92139831 NC_060938.1 CM039047.1 99.84 True local misassembly 94759977 94919851 92140372 92300361 NC_060938.1 CM039047.1 99.58 True indel: indel (> 5bp) 94919802 95192986 92300372 92572875 NC_060938.1 CM039047.1 99.59 True local misassembly 95192716 95273749 92574772 92655816 NC_060938.1 CM039047.1 99.65 True local misassembly 95273849 95481460 92655817 92863253 NC_060938.1 CM039047.1 99.6 True local misassembly 95481435 96719710 92863336 94100841 NC_060938.1 CM039047.1 99.71 True indel: indel (<= 5bp) 96719907 98741503 94101033 96123141 NC_060938.1 CM039047.1 99.58 True relocation, inconsistency = -7137 98741580 99100962 96130355 96489655 NC_060938.1 CM039047.1 99.43 True indel: indel (> 5bp) 99101082 99725799 96489844 97116874 NC_060938.1 CM039047.1 97.77 True local misassembly 99726845 99996484 97118126 97387756 NC_060938.1 CM039047.1 99.97 True relocation, scaffold gap is present, inconsistency = 19830 100225738 100345769 97597180 97717209 NC_060938.1 CM039047.1 99.78 True relocation, inconsistency = 297542 100649726 100650747 97723624 97724640 NC_060938.1 CM039047.1 96.67 True relocation, inconsistency = 321519 100976323 100977024 97728697 97729399 NC_060938.1 CM039047.1 96.02 True relocation, inconsistency = 128214 101129533 101130188 97753694 97754349 NC_060938.1 CM039047.1 96.95 True relocation, inconsistency = -746934 100384696 100387809 97755791 97758898 NC_060938.1 CM039047.1 98.43 True indel: indel (<= 5bp) 100387863 100650097 97758955 98021171 NC_060938.1 CM039047.1 99.45 True relocation, inconsistency = 25038 100675136 100866101 98021172 98212097 NC_060938.1 CM039047.1 99.59 True fake: scaffold gap size wrong estimation (local) 100888733 101033309 98234569 98379044 NC_060938.1 CM039047.1 99.16 True indel: indel (> 5bp) 101033642 101159990 98379345 98505585 NC_060938.1 CM039047.1 99.48 True CONTIG CM039047.1 98510794 misassembled 2657150 2663326 17 6172 NC_060938.1 CM039048.1 98.98 True translocation 5592843 5665154 6173 78461 NC_060945.1 CM039048.1 98.86 True translocation 5773553 5969837 78462 274761 NC_060946.1 CM039048.1 99.41 True relocation, inconsistency = 37920 6007758 6185018 274762 451695 NC_060946.1 CM039048.1 99.21 True local misassembly 6184923 6602875 452607 871180 NC_060946.1 CM039048.1 99.03 True translocation 5380164 5537024 871181 1028101 NC_060939.1 CM039048.1 99.16 True relocation, inconsistency = -7201 5529824 5552867 1028102 1051222 NC_060939.1 CM039048.1 97.01 True indel: indel (<= 5bp) 5552927 5646554 1051286 1144865 NC_060939.1 CM039048.1 97.43 True relocation, inconsistency = -109741 5536814 5967275 1144866 1575657 NC_060939.1 CM039048.1 97.51 True indel: indel (<= 5bp) 5967463 5976765 1575840 1585110 NC_060939.1 CM039048.1 98.14 True translocation 10222760 10223409 1585952 1586601 NC_060937.1 CM039048.1 97.54 True relocation, inconsistency = 43169 10271273 10272560 1591296 1592588 NC_060937.1 CM039048.1 96.22 True translocation 6008277 6009921 1600593 1602259 NC_060939.1 CM039048.1 96.54 True relocation, inconsistency = -19111 5991186 5992535 1602635 1603984 NC_060939.1 CM039048.1 98.52 True indel: indel (> 5bp) 5992875 5993565 1604334 1605024 NC_060939.1 CM039048.1 98.7 True indel: indel (> 5bp) 5993581 5994092 1605025 1605536 NC_060939.1 CM039048.1 98.05 True local misassembly 5989841 6017373 1606081 1634058 NC_060939.1 CM039048.1 95.48 True relocation, inconsistency = -14260 6003114 6016695 1634059 1647776 NC_060939.1 CM039048.1 96.13 True local misassembly 6017413 6019024 1648317 1649908 NC_060939.1 CM039048.1 96.66 True local misassembly 6020646 6033566 1649911 1662620 NC_060939.1 CM039048.1 96.0 True relocation, inconsistency = -40683 5992888 5993565 1662625 1663302 NC_060939.1 CM039048.1 98.53 True indel: indel (> 5bp) 5993581 5994103 1663303 1663825 NC_060939.1 CM039048.1 97.13 True indel: indel (<= 5bp) 5994603 5995152 1664320 1664869 NC_060939.1 CM039048.1 97.45 True local misassembly 5996290 5997311 1665967 1666988 NC_060939.1 CM039048.1 97.85 True indel: indel (<= 5bp) 5997312 5998894 1666994 1668576 NC_060939.1 CM039048.1 97.79 True indel: indel (<= 5bp) 5999120 6000384 1668797 1670061 NC_060939.1 CM039048.1 97.71 True local misassembly 6001002 6001805 1671059 1671862 NC_060939.1 CM039048.1 98.76 True local misassembly 6003147 6004069 1673214 1674136 NC_060939.1 CM039048.1 97.72 True indel: indel (> 5bp) 6004423 6005194 1674516 1675287 NC_060939.1 CM039048.1 98.06 True local misassembly 6005293 6005801 1675581 1676089 NC_060939.1 CM039048.1 97.25 True indel: indel (<= 5bp) 6005807 6006917 1676090 1677200 NC_060939.1 CM039048.1 98.65 True relocation, inconsistency = 38740 6046002 6047450 1677545 1678993 NC_060939.1 CM039048.1 98.34 True indel: indel (> 5bp) 6047451 6048711 1679004 1680264 NC_060939.1 CM039048.1 99.29 True indel: indel (> 5bp) 6049082 6050296 1680595 1681809 NC_060939.1 CM039048.1 98.93 True local misassembly 6051446 6052374 1682763 1683691 NC_060939.1 CM039048.1 97.31 True indel: indel (<= 5bp) 6052380 6052879 1683692 1684191 NC_060939.1 CM039048.1 98.6 True indel: indel (> 5bp) 6052880 6053613 1684217 1684950 NC_060939.1 CM039048.1 97.55 True local misassembly 6054439 6055235 1685596 1686392 NC_060939.1 CM039048.1 98.49 True local misassembly 6055939 6057324 1686995 1688380 NC_060939.1 CM039048.1 98.7 True indel: indel (> 5bp) 6057335 6058347 1688381 1689393 NC_060939.1 CM039048.1 98.03 True local misassembly 6058559 6059245 1689885 1690571 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = 130528 6189774 6190641 1690572 1691439 NC_060939.1 CM039048.1 98.39 True indel: indel (<= 5bp) 6190643 6191326 1691440 1692123 NC_060939.1 CM039048.1 98.68 True relocation, inconsistency = -130493 6060834 6061818 1692124 1693108 NC_060939.1 CM039048.1 98.27 True indel: indel (<= 5bp) 6062127 6063644 1693422 1694939 NC_060939.1 CM039048.1 97.76 True indel: indel (> 5bp) 6063779 6064339 1695063 1695623 NC_060939.1 CM039048.1 97.5 True indel: indel (> 5bp) 6064355 6065614 1695624 1696883 NC_060939.1 CM039048.1 97.7 True relocation, inconsistency = 130416 6196165 6197110 1697018 1697963 NC_060939.1 CM039048.1 98.31 True indel: indel (<= 5bp) 6197116 6197735 1697964 1698583 NC_060939.1 CM039048.1 97.74 True indel: indel (<= 5bp) 6198071 6198583 1698914 1699426 NC_060939.1 CM039048.1 98.25 True indel: indel (<= 5bp) 6198584 6199511 1699428 1700355 NC_060939.1 CM039048.1 97.74 True local misassembly 6200133 6201210 1700972 1702049 NC_060939.1 CM039048.1 98.24 True indel: indel (> 5bp) 6201211 6201761 1702060 1702610 NC_060939.1 CM039048.1 99.27 True indel: indel (> 5bp) 6202115 6202980 1703001 1703866 NC_060939.1 CM039048.1 97.92 True indel: indel (> 5bp) 6203091 6204265 1704002 1705176 NC_060939.1 CM039048.1 98.47 True indel: indel (> 5bp) 6204296 6205503 1705177 1706384 NC_060939.1 CM039048.1 98.43 True indel: indel (<= 5bp) 6205504 6206274 1706386 1707156 NC_060939.1 CM039048.1 98.57 True local misassembly 6207053 6208130 1708000 1709077 NC_060939.1 CM039048.1 98.05 True indel: indel (> 5bp) 6208131 6208681 1709088 1709638 NC_060939.1 CM039048.1 99.09 True indel: indel (> 5bp) 6208979 6209693 1709942 1710656 NC_060939.1 CM039048.1 98.18 True relocation, inconsistency = -16051 6193704 6194713 1710718 1711727 NC_060939.1 CM039048.1 96.44 True indel: indel (> 5bp) 6195084 6195800 1712024 1712740 NC_060939.1 CM039048.1 96.23 True local misassembly 6196165 6196698 1713405 1713938 NC_060939.1 CM039048.1 97.94 True local misassembly 6197603 6198286 1714807 1715490 NC_060939.1 CM039048.1 98.98 True indel: indel (> 5bp) 6198584 6199555 1715779 1716750 NC_060939.1 CM039048.1 98.35 True indel: indel (> 5bp) 6199645 6201076 1716890 1718321 NC_060939.1 CM039048.1 98.32 True indel: indel (<= 5bp) 6201078 6201761 1718322 1719005 NC_060939.1 CM039048.1 98.98 True indel: indel (> 5bp) 6202029 6202745 1719294 1720010 NC_060939.1 CM039048.1 97.77 True local misassembly 6203090 6203623 1720675 1721208 NC_060939.1 CM039048.1 98.13 True indel: indel (> 5bp) 6203654 6204521 1721209 1722076 NC_060939.1 CM039048.1 98.73 True indel: indel (<= 5bp) 6204523 6205206 1722077 1722760 NC_060939.1 CM039048.1 99.12 True indel: indel (> 5bp) 6205504 6206475 1723049 1724020 NC_060939.1 CM039048.1 98.25 True indel: indel (> 5bp) 6206565 6207996 1724160 1725591 NC_060939.1 CM039048.1 98.25 True indel: indel (<= 5bp) 6207998 6208681 1725592 1726275 NC_060939.1 CM039048.1 99.12 True indel: indel (> 5bp) 6208979 6209950 1726564 1727535 NC_060939.1 CM039048.1 98.46 True indel: indel (> 5bp) 6210040 6211605 1727670 1729235 NC_060939.1 CM039048.1 98.21 True indel: indel (<= 5bp) 6211941 6212453 1729566 1730078 NC_060939.1 CM039048.1 98.25 True indel: indel (<= 5bp) 6212454 6213381 1730080 1731007 NC_060939.1 CM039048.1 97.74 True local misassembly 6214003 6215080 1731624 1732701 NC_060939.1 CM039048.1 98.24 True indel: indel (> 5bp) 6215081 6215631 1732712 1733262 NC_060939.1 CM039048.1 99.27 True indel: indel (> 5bp) 6216015 6216995 1733653 1734633 NC_060939.1 CM039048.1 97.35 True local misassembly 6217544 6218135 1735237 1735828 NC_060939.1 CM039048.1 98.48 True indel: indel (> 5bp) 6218166 6219373 1735829 1737036 NC_060939.1 CM039048.1 98.01 True indel: indel (<= 5bp) 6219374 6220144 1737038 1737808 NC_060939.1 CM039048.1 98.31 True local misassembly 6220938 6222015 1738652 1739729 NC_060939.1 CM039048.1 98.05 True indel: indel (> 5bp) 6222016 6222566 1739740 1740290 NC_060939.1 CM039048.1 98.91 True indel: indel (> 5bp) 6222864 6223578 1740594 1741308 NC_060939.1 CM039048.1 98.18 True relocation, inconsistency = -70472 6153168 6154177 1741370 1742379 NC_060939.1 CM039048.1 96.04 True indel: indel (> 5bp) 6154548 6155264 1742676 1743392 NC_060939.1 CM039048.1 96.93 True local misassembly 6155624 6156157 1744062 1744595 NC_060939.1 CM039048.1 97.0 True local misassembly 6157056 6157739 1745464 1746147 NC_060939.1 CM039048.1 98.1 True indel: indel (> 5bp) 6158037 6158733 1746436 1747132 NC_060939.1 CM039048.1 97.7 True indel: indel (> 5bp) 6159108 6160053 1747527 1748472 NC_060939.1 CM039048.1 97.67 True indel: indel (<= 5bp) 6160059 6160678 1748473 1749092 NC_060939.1 CM039048.1 97.74 True indel: indel (<= 5bp) 6161014 6161526 1749423 1749935 NC_060939.1 CM039048.1 98.05 True indel: indel (<= 5bp) 6161527 6162454 1749937 1750864 NC_060939.1 CM039048.1 97.74 True local misassembly 6163071 6164148 1751481 1752558 NC_060939.1 CM039048.1 98.05 True indel: indel (> 5bp) 6164149 6164699 1752569 1753119 NC_060939.1 CM039048.1 99.09 True indel: indel (> 5bp) 6165083 6165924 1753510 1754351 NC_060939.1 CM039048.1 97.74 True indel: indel (> 5bp) 6166070 6167003 1754542 1755475 NC_060939.1 CM039048.1 98.07 True indel: indel (<= 5bp) 6167009 6168476 1755476 1756943 NC_060939.1 CM039048.1 98.37 True indel: indel (<= 5bp) 6168477 6169204 1756945 1757672 NC_060939.1 CM039048.1 98.49 True local misassembly 6170021 6171098 1758544 1759621 NC_060939.1 CM039048.1 97.68 True indel: indel (> 5bp) 6171099 6171649 1759632 1760182 NC_060939.1 CM039048.1 98.73 True indel: indel (> 5bp) 6171947 6172874 1760486 1761413 NC_060939.1 CM039048.1 97.95 True indel: indel (> 5bp) 6173082 6173686 1761566 1762170 NC_060939.1 CM039048.1 97.52 True relocation, inconsistency = 11388 6185752 6258282 1762848 1835517 NC_060939.1 CM039048.1 96.33 True relocation, inconsistency = -74717 6184030 6184751 1835982 1836703 NC_060939.1 CM039048.1 99.31 True local misassembly 6185729 6186675 1836871 1837817 NC_060939.1 CM039048.1 98.94 True indel: indel (<= 5bp) 6186681 6188148 1837818 1839285 NC_060939.1 CM039048.1 99.11 True indel: indel (<= 5bp) 6188149 6188949 1839287 1840087 NC_060939.1 CM039048.1 98.38 True indel: indel (> 5bp) 6189210 6191623 1840372 1842785 NC_060939.1 CM039048.1 98.76 True indel: indel (<= 5bp) 6191624 6192320 1842787 1843483 NC_060939.1 CM039048.1 98.42 True indel: indel (> 5bp) 6192755 6195083 1843968 1846296 NC_060939.1 CM039048.1 98.75 True indel: indel (<= 5bp) 6195084 6196011 1846298 1847225 NC_060939.1 CM039048.1 97.84 True indel: stretch of mismatches 6196165 6197110 1847379 1848324 NC_060939.1 CM039048.1 98.84 True indel: indel (<= 5bp) 6197116 6198583 1848325 1849792 NC_060939.1 CM039048.1 99.11 True indel: indel (<= 5bp) 6198584 6199548 1849794 1850758 NC_060939.1 CM039048.1 98.86 True indel: indel (> 5bp) 6199645 6201926 1850880 1853161 NC_060939.1 CM039048.1 99.17 True indel: indel (> 5bp) 6202029 6202956 1853295 1854222 NC_060939.1 CM039048.1 98.81 True fake: not a misassembly (possible transposable element) 13694943 13695506 1854310 1854873 NC_060939.1 CM039048.1 98.23 True fake: not a misassembly (possible transposable element) 6203568 6204398 1854879 1855709 NC_060939.1 CM039048.1 98.07 True indel: indel (> 5bp) 6204414 6205503 1855710 1856799 NC_060939.1 CM039048.1 99.72 True indel: indel (<= 5bp) 6205504 6206200 1856801 1857497 NC_060939.1 CM039048.1 98.85 True local misassembly 6207043 6207873 1858375 1859205 NC_060939.1 CM039048.1 98.19 True indel: indel (> 5bp) 6207889 6208556 1859206 1859873 NC_060939.1 CM039048.1 99.7 True indel: indel (<= 5bp) 6208979 6209675 1860292 1860988 NC_060939.1 CM039048.1 98.85 True indel: indel (> 5bp) 6210040 6211215 1861393 1862568 NC_060939.1 CM039048.1 98.81 True indel: indel (> 5bp) 6211246 6212453 1862569 1863776 NC_060939.1 CM039048.1 99.25 True indel: indel (<= 5bp) 6212454 6213150 1863778 1864474 NC_060939.1 CM039048.1 98.13 True indel: indel (> 5bp) 6213515 6214690 1864854 1866029 NC_060939.1 CM039048.1 98.72 True indel: indel (> 5bp) 6214721 6215928 1866030 1867237 NC_060939.1 CM039048.1 99.17 True indel: indel (<= 5bp) 6215929 6216625 1867239 1867935 NC_060939.1 CM039048.1 98.57 True local misassembly 6217524 6218135 1868889 1869500 NC_060939.1 CM039048.1 98.37 True indel: indel (> 5bp) 6218166 6219373 1869501 1870708 NC_060939.1 CM039048.1 98.76 True indel: indel (<= 5bp) 6219374 6220070 1870710 1871406 NC_060939.1 CM039048.1 97.85 True indel: stretch of mismatches 6220450 6221625 1871786 1872961 NC_060939.1 CM039048.1 98.89 True indel: indel (> 5bp) 6221656 6222863 1872962 1874169 NC_060939.1 CM039048.1 99.01 True indel: indel (<= 5bp) 6222864 6223791 1874171 1875098 NC_060939.1 CM039048.1 98.92 True local misassembly 6224715 6226196 1876007 1877488 NC_060939.1 CM039048.1 98.45 True indel: indel (> 5bp) 6226329 6227025 1877652 1878348 NC_060939.1 CM039048.1 98.13 True local misassembly 6227863 6228384 1879206 1879727 NC_060939.1 CM039048.1 98.85 True indel: indel (> 5bp) 6228400 6229793 1879728 1881121 NC_060939.1 CM039048.1 98.42 True indel: indel (<= 5bp) 6229794 6230721 1881123 1882050 NC_060939.1 CM039048.1 98.17 True local misassembly 6231333 6232158 1882697 1883522 NC_060939.1 CM039048.1 97.94 True indel: indel (> 5bp) 6232174 6232841 1883523 1884190 NC_060939.1 CM039048.1 99.1 True relocation, inconsistency = 7427906 13660748 13661862 1884191 1885305 NC_060939.1 CM039048.1 98.48 True indel: indel (> 5bp) 13661863 13662704 1885366 1886207 NC_060939.1 CM039048.1 97.74 True indel: indel (> 5bp) 13663017 13664353 1886480 1887816 NC_060939.1 CM039048.1 97.38 True indel: indel (> 5bp) 13664509 13666437 1887992 1889920 NC_060939.1 CM039048.1 98.24 True relocation, inconsistency = -7491297 6175421 6176814 1890201 1891594 NC_060939.1 CM039048.1 98.06 True indel: indel (<= 5bp) 6176815 6177567 1891596 1892348 NC_060939.1 CM039048.1 98.27 True local misassembly 6177772 6178315 1892658 1893201 NC_060939.1 CM039048.1 99.45 True relocation, inconsistency = 7491419 13669735 13671038 1893202 1894505 NC_060939.1 CM039048.1 97.93 True indel: indel (> 5bp) 13671316 13672284 1894777 1895745 NC_060939.1 CM039048.1 98.45 True indel: indel (> 5bp) 13672546 13673147 1895977 1896578 NC_060939.1 CM039048.1 97.84 True indel: indel (<= 5bp) 13673226 13673931 1896661 1897366 NC_060939.1 CM039048.1 97.17 True indel: indel (<= 5bp) 13673932 13674707 1897368 1898143 NC_060939.1 CM039048.1 98.07 True indel: indel (<= 5bp) 13674713 13675799 1898144 1899230 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = -7492243 6184030 6184751 1899704 1900425 NC_060939.1 CM039048.1 99.31 True local misassembly 6185729 6186675 1900593 1901539 NC_060939.1 CM039048.1 98.94 True indel: indel (<= 5bp) 6186681 6188148 1901540 1903007 NC_060939.1 CM039048.1 99.11 True indel: indel (<= 5bp) 6188149 6188949 1903009 1903809 NC_060939.1 CM039048.1 98.38 True indel: indel (> 5bp) 6189210 6191623 1904094 1906507 NC_060939.1 CM039048.1 98.76 True indel: indel (<= 5bp) 6191624 6192320 1906509 1907205 NC_060939.1 CM039048.1 98.42 True indel: indel (> 5bp) 6192755 6194786 1907690 1909721 NC_060939.1 CM039048.1 98.87 True indel: indel (<= 5bp) 6195084 6195841 1910015 1910772 NC_060939.1 CM039048.1 97.49 True local misassembly 6196484 6197110 1911354 1911980 NC_060939.1 CM039048.1 99.04 True indel: indel (<= 5bp) 6197116 6198583 1911981 1913448 NC_060939.1 CM039048.1 99.32 True indel: indel (<= 5bp) 6198584 6199336 1913450 1914202 NC_060939.1 CM039048.1 98.8 True indel: indel (> 5bp) 6199857 6201926 1914683 1916752 NC_060939.1 CM039048.1 98.6 True indel: indel (> 5bp) 6202029 6202781 1916886 1917638 NC_060939.1 CM039048.1 98.8 True indel: indel (> 5bp) 6203302 6203804 1918119 1918621 NC_060939.1 CM039048.1 98.21 True indel: indel (> 5bp) 6203815 6205207 1918622 1920014 NC_060939.1 CM039048.1 99.64 True indel: indel (> 5bp) 6205208 6206431 1920025 1921248 NC_060939.1 CM039048.1 99.35 True indel: indel (> 5bp) 6206432 6208978 1921259 1923805 NC_060939.1 CM039048.1 99.37 True indel: indel (<= 5bp) 6208979 6209731 1923807 1924559 NC_060939.1 CM039048.1 98.67 True local misassembly 6210362 6212453 1925149 1927240 NC_060939.1 CM039048.1 99.09 True indel: indel (<= 5bp) 6212454 6213206 1927242 1927994 NC_060939.1 CM039048.1 98.54 True local misassembly 6213394 6216483 1928362 1931451 NC_060939.1 CM039048.1 99.26 True indel: indel (> 5bp) 6216499 6217472 1931452 1932425 NC_060939.1 CM039048.1 99.28 True indel: indel (> 5bp) 6217524 6220301 1932512 1935289 NC_060939.1 CM039048.1 98.96 True indel: indel (> 5bp) 6220317 6220927 1935290 1935900 NC_060939.1 CM039048.1 99.84 True indel: indel (<= 5bp) 6220933 6223791 1935901 1938759 NC_060939.1 CM039048.1 99.23 True indel: indel (> 5bp) 6223792 6224402 1938770 1939380 NC_060939.1 CM039048.1 99.67 True indel: indel (<= 5bp) 6224403 6226037 1939386 1941020 NC_060939.1 CM039048.1 99.33 True indel: indel (<= 5bp) 6226038 6227085 1941026 1942073 NC_060939.1 CM039048.1 99.33 True indel: indel (> 5bp) 6227242 6230500 1942265 1945523 NC_060939.1 CM039048.1 99.42 True relocation, inconsistency = -43078 6187423 6230525 1945524 1988710 NC_060939.1 CM039048.1 98.54 True relocation, inconsistency = -45125 6185401 6272063 1988711 2075372 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = -98370 6173694 6272574 2075373 2174039 NC_060939.1 CM039048.1 98.15 True relocation, inconsistency = -285597 5987173 5987851 2174235 2174913 NC_060939.1 CM039048.1 97.64 True relocation, inconsistency = 7711106 13698982 13701003 2174938 2176943 NC_060939.1 CM039048.1 96.27 True relocation, inconsistency = -7506201 6194803 6244552 2176944 2226833 NC_060939.1 CM039048.1 98.09 True relocation, inconsistency = -57731 6186851 6261590 2226863 2301659 NC_060939.1 CM039048.1 96.14 True relocation, inconsistency = 3318234 9580453 9587700 2302288 2309581 NC_060939.1 CM039048.1 96.33 True relocation, inconsistency = -3401178 6186523 6189710 2309582 2312815 NC_060939.1 CM039048.1 95.23 True relocation, inconsistency = -16573 6174396 6175124 2314074 2314802 NC_060939.1 CM039048.1 98.77 True local misassembly 6175647 6176518 2315325 2316196 NC_060939.1 CM039048.1 98.74 True indel: indel (> 5bp) 6176815 6177511 2316474 2317170 NC_060939.1 CM039048.1 97.85 True local misassembly 6177756 6178956 2317550 2318750 NC_060939.1 CM039048.1 98.33 True relocation, inconsistency = 7308 6186511 6197628 2318997 2330072 NC_060939.1 CM039048.1 96.1 True relocation, inconsistency = -11106 6186523 6197616 2330073 2341124 NC_060939.1 CM039048.1 96.09 True relocation, inconsistency = 132608 6330225 6359652 2341125 2370388 NC_060939.1 CM039048.1 97.02 True relocation, inconsistency = 4325239 10684892 10685687 2370389 2371198 NC_060939.1 CM039048.1 95.08 True local misassembly 10686520 10687579 2372035 2373094 NC_060939.1 CM039048.1 97.64 True local misassembly 10687778 10688480 2373392 2374094 NC_060939.1 CM039048.1 97.72 True local misassembly 10682470 10685687 2374344 2377570 NC_060939.1 CM039048.1 96.88 True local misassembly 10686520 10687579 2378407 2379466 NC_060939.1 CM039048.1 97.64 True local misassembly 10687778 10688480 2379764 2380466 NC_060939.1 CM039048.1 97.72 True local misassembly 10682470 10685687 2380716 2383942 NC_060939.1 CM039048.1 96.85 True relocation, inconsistency = -4325208 6360852 6362305 2384315 2385783 NC_060939.1 CM039048.1 96.87 True relocation, inconsistency = 7156457 13519447 13521757 2386468 2388758 NC_060939.1 CM039048.1 96.16 True relocation, inconsistency = -6883506 6638252 6656647 2388759 2407185 NC_060939.1 CM039048.1 96.07 True relocation, inconsistency = -13490 6643395 6649361 2407423 2413355 NC_060939.1 CM039048.1 97.0 True local misassembly 6648943 6655087 2413782 2419947 NC_060939.1 CM039048.1 97.48 True relocation, inconsistency = -11677 6643411 6649361 2419948 2425864 NC_060939.1 CM039048.1 97.0 True relocation, inconsistency = 2000074 8649915 8655982 2426344 2432426 NC_060939.1 CM039048.1 97.24 True relocation, inconsistency = 4926789 13582796 13601667 2432451 2451376 NC_060939.1 CM039048.1 96.92 True relocation, inconsistency = -34261 13567687 13571928 2451657 2455952 NC_060939.1 CM039048.1 95.69 True relocation, inconsistency = -568990 13002939 13011404 2455953 2464396 NC_060939.1 CM039048.1 97.7 True relocation, inconsistency = -6218129 6796508 6807742 2467629 2478887 NC_060939.1 CM039048.1 97.88 True relocation, inconsistency = 2963020 9772102 9779720 2480227 2487873 NC_060939.1 CM039048.1 98.36 True relocation, inconsistency = -3151306 6628417 6634722 2487876 2494141 NC_060939.1 CM039048.1 96.58 True relocation, inconsistency = 2364520 8999243 9000194 2494142 2495093 NC_060939.1 CM039048.1 98.46 True local misassembly 9001226 9002493 2496175 2497442 NC_060939.1 CM039048.1 99.17 True relocation, inconsistency = 3348886 12351380 12357952 2497443 2504048 NC_060939.1 CM039048.1 97.8 True relocation, inconsistency = -2262171 10095782 10098850 2504049 2507146 NC_060939.1 CM039048.1 98.63 True local misassembly 10093485 10100228 2507147 2513875 NC_060939.1 CM039048.1 97.96 True relocation, inconsistency = -3296991 6803238 6804775 2513876 2515432 NC_060939.1 CM039048.1 96.99 True relocation, inconsistency = 1281312 8086346 8088257 2515691 2517602 NC_060939.1 CM039048.1 96.4 True relocation, inconsistency = 2784617 10872875 10880625 2517603 2525333 NC_060939.1 CM039048.1 98.05 True relocation, inconsistency = -798366 10082260 10086242 2525334 2529341 NC_060939.1 CM039048.1 98.89 True relocation, inconsistency = 9035 10095278 10101098 2529342 2535186 NC_060939.1 CM039048.1 98.65 True relocation, inconsistency = -1102780 8998319 8999668 2535187 2536516 NC_060939.1 CM039048.1 97.4 True relocation, inconsistency = -987836 8011833 8016826 2536517 2541519 NC_060939.1 CM039048.1 98.33 True relocation, inconsistency = -1389252 6627933 6634466 2541878 2548331 NC_060939.1 CM039048.1 96.43 True relocation, inconsistency = 4141331 10776473 10781882 2549007 2554333 NC_060939.1 CM039048.1 97.4 True local misassembly 10776473 10786809 2554334 2564643 NC_060939.1 CM039048.1 97.68 True relocation, inconsistency = 241802 11028612 11035258 2564644 2571209 NC_060939.1 CM039048.1 96.41 True relocation, inconsistency = -4404724 6630535 6634722 2571210 2575430 NC_060939.1 CM039048.1 96.06 True relocation, inconsistency = 139728 6776848 6784188 2577828 2585252 NC_060939.1 CM039048.1 96.46 True relocation, inconsistency = 6742000 13526189 13530256 2585253 2589318 NC_060939.1 CM039048.1 95.45 True relocation, inconsistency = -2493194 11037063 11043056 2589319 2595349 NC_060939.1 CM039048.1 98.03 True relocation, inconsistency = -3925337 7117720 7122808 2595350 2600440 NC_060939.1 CM039048.1 97.08 True relocation, inconsistency = 1885030 9008150 9014362 2600752 2606985 NC_060939.1 CM039048.1 98.3 True relocation, inconsistency = -1892174 7122189 7122808 2606986 2607582 NC_060939.1 CM039048.1 97.31 True relocation, inconsistency = 3586287 10710075 10717439 2608562 2615925 NC_060939.1 CM039048.1 98.42 True relocation, inconsistency = -3013074 7704366 7706583 2615926 2618149 NC_060939.1 CM039048.1 98.67 True relocation, inconsistency = 3734101 11440742 11444487 2618207 2621972 NC_060939.1 CM039048.1 98.58 True relocation, inconsistency = -2793946 8650542 8658468 2621973 2629928 NC_060939.1 CM039048.1 98.04 True relocation, inconsistency = -986145 7672324 7678939 2629929 2636550 NC_060939.1 CM039048.1 97.92 True relocation, inconsistency = 1338681 9017978 9024763 2636908 2643678 NC_060939.1 CM039048.1 98.08 True relocation, inconsistency = 1016650 10041852 10046854 2644117 2649130 NC_060939.1 CM039048.1 97.14 True local misassembly 10041852 10046336 2649504 2653999 NC_060939.1 CM039048.1 97.1 True relocation, inconsistency = -508373 9537964 9542104 2654000 2658117 NC_060939.1 CM039048.1 97.36 True relocation, inconsistency = -1398643 8143462 8148590 2658118 2663291 NC_060939.1 CM039048.1 98.27 True relocation, inconsistency = 2062552 10211143 10219467 2663292 2671590 NC_060939.1 CM039048.1 97.78 True relocation, inconsistency = 2833728 13053235 13054125 2671630 2672520 NC_060939.1 CM039048.1 99.14 True relocation, inconsistency = -4910664 8143462 8148590 2672521 2677694 NC_060939.1 CM039048.1 98.25 True relocation, inconsistency = 2062552 10211143 10219467 2677695 2685993 NC_060939.1 CM039048.1 97.78 True relocation, inconsistency = -3588637 6630831 6634722 2685994 2689873 NC_060939.1 CM039048.1 95.99 True relocation, inconsistency = 6923160 13558472 13567041 2690463 2699070 NC_060939.1 CM039048.1 96.03 True relocation, inconsistency = -4562379 9004890 9005841 2699298 2700249 NC_060939.1 CM039048.1 99.16 True indel: indel (> 5bp) 9006300 9007364 2700728 2701792 NC_060939.1 CM039048.1 99.34 True indel: indel (<= 5bp) 9007365 9007892 2701794 2702321 NC_060939.1 CM039048.1 99.24 True indel: indel (> 5bp) 9008305 9009041 2702759 2703495 NC_060939.1 CM039048.1 99.59 True relocation, inconsistency = -1892178 7116913 7124150 2703545 2710786 NC_060939.1 CM039048.1 97.09 True relocation, inconsistency = -464830 6662846 6664979 2714312 2716485 NC_060939.1 CM039048.1 97.63 True relocation, inconsistency = 1034492 7699472 7706798 2716486 2723815 NC_060939.1 CM039048.1 98.55 True relocation, inconsistency = -1047015 6662846 6664979 2726878 2729051 NC_060939.1 CM039048.1 97.61 True relocation, inconsistency = 1034492 7699472 7706567 2729052 2736143 NC_060939.1 CM039048.1 98.79 True relocation, inconsistency = 2859791 10566432 10570280 2736217 2740085 NC_060939.1 CM039048.1 98.2 True relocation, inconsistency = -1919636 8650645 8661045 2740086 2750260 NC_060939.1 CM039048.1 95.68 True relocation, inconsistency = -1144379 7516667 7517220 2750261 2750814 NC_060939.1 CM039048.1 96.55 True relocation, inconsistency = 2522395 10040053 10046844 2751252 2758040 NC_060939.1 CM039048.1 97.4 True relocation, inconsistency = 1447616 11494461 11496659 2758041 2760239 NC_060939.1 CM039048.1 98.88 True relocation, inconsistency = -3824458 7672202 7675750 2760240 2763799 NC_060939.1 CM039048.1 98.04 True relocation, inconsistency = 3760384 11436135 11443847 2763800 2771508 NC_060939.1 CM039048.1 97.33 True relocation, inconsistency = -1403245 10040603 10045457 2771509 2776356 NC_060939.1 CM039048.1 97.37 True local misassembly 10040053 10046839 2776357 2783135 NC_060939.1 CM039048.1 97.76 True local misassembly 10043268 10045410 2783136 2785264 NC_060939.1 CM039048.1 97.66 True relocation, inconsistency = 1445807 11491218 11497014 2785265 2791066 NC_060939.1 CM039048.1 99.12 True local misassembly 11491633 11494813 2791067 2794232 NC_060939.1 CM039048.1 99.02 True local misassembly 11491226 11496646 2794233 2799623 NC_060939.1 CM039048.1 98.77 True relocation, inconsistency = -1456594 10040053 10046859 2799624 2806377 NC_060939.1 CM039048.1 97.73 True relocation, inconsistency = 1444028 11491218 11497014 2806708 2812509 NC_060939.1 CM039048.1 99.16 True local misassembly 11491633 11494813 2812510 2815675 NC_060939.1 CM039048.1 99.0 True local misassembly 11491226 11497019 2815676 2821454 NC_060939.1 CM039048.1 98.98 True local misassembly 11493432 11495697 2821455 2823705 NC_060939.1 CM039048.1 99.0 True relocation, inconsistency = -3248776 8246922 8252875 2823706 2829615 NC_060939.1 CM039048.1 97.31 True relocation, inconsistency = 2329779 10587239 10588474 2834200 2835445 NC_060939.1 CM039048.1 98.2 True relocation, inconsistency = -26603 10561872 10567138 2835446 2840723 NC_060939.1 CM039048.1 97.94 True relocation, inconsistency = -1552719 9014420 9024763 2840724 2851142 NC_060939.1 CM039048.1 97.74 True relocation, inconsistency = -12528 9012636 9024763 2851543 2863754 NC_060939.1 CM039048.1 97.8 True relocation, inconsistency = -798841 8225923 8234058 2863755 2871891 NC_060939.1 CM039048.1 98.49 True relocation, inconsistency = 283347 8517406 8518793 2871892 2873250 NC_060939.1 CM039048.1 97.65 True relocation, inconsistency = 4804536 13323330 13329954 2873251 2879895 NC_060939.1 CM039048.1 97.79 True relocation, inconsistency = -895670 12434630 12439698 2880241 2885309 NC_060939.1 CM039048.1 96.97 True relocation, inconsistency = -948844 11490855 11499425 2885310 2893865 NC_060939.1 CM039048.1 98.37 True relocation, inconsistency = -10784 11490846 11497718 2896070 2902902 NC_060939.1 CM039048.1 98.33 True relocation, inconsistency = -2773724 8723995 8726080 2902903 2904983 NC_060939.1 CM039048.1 97.47 True relocation, inconsistency = -1233974 7492107 7498673 2904984 2911515 NC_060939.1 CM039048.1 98.1 True relocation, inconsistency = 2058914 9557588 9560669 2911516 2914582 NC_060939.1 CM039048.1 96.13 True relocation, inconsistency = -1289158 8271512 8278268 2914583 2921364 NC_060939.1 CM039048.1 98.54 True relocation, inconsistency = -785892 7492377 7495699 2921365 2924672 NC_060939.1 CM039048.1 98.84 True local misassembly 7492112 7498668 2924673 2931239 NC_060939.1 CM039048.1 99.07 True relocation, inconsistency = 1079506 8580153 8587324 2933218 2940409 NC_060939.1 CM039048.1 98.63 True relocation, inconsistency = -2196943 6390935 6396181 2940963 2946170 NC_060939.1 CM039048.1 96.01 True relocation, inconsistency = 3797177 10193359 10199707 2946171 2952474 NC_060939.1 CM039048.1 98.19 True relocation, inconsistency = 1390478 11599578 11602726 2961867 2965020 NC_060939.1 CM039048.1 96.41 True relocation, inconsistency = 251380 11854107 11860869 2965021 2971698 NC_060939.1 CM039048.1 96.82 True relocation, inconsistency = -3254314 8606556 8610533 2971699 2975641 NC_060939.1 CM039048.1 97.57 True relocation, inconsistency = 314311 8925816 8929388 2976613 2980140 NC_060939.1 CM039048.1 96.28 True local misassembly 8925816 8931290 2980141 2985555 NC_060939.1 CM039048.1 96.62 True local misassembly 8925914 8931284 2985556 2990871 NC_060939.1 CM039048.1 96.66 True relocation, inconsistency = 2922078 11854135 11860869 2991644 2998308 NC_060939.1 CM039048.1 97.07 True relocation, inconsistency = 1221085 13082363 13088060 2998717 3004375 NC_060939.1 CM039048.1 98.23 True relocation, inconsistency = -1515390 11572970 11579754 3004675 3011429 NC_060939.1 CM039048.1 98.44 True relocation, inconsistency = -4064485 7515270 7517429 3011430 3013594 NC_060939.1 CM039048.1 97.59 True relocation, inconsistency = 1146153 8663583 8670367 3013595 3020335 NC_060939.1 CM039048.1 98.48 True relocation, inconsistency = 4093788 12764156 12770343 3020336 3026503 NC_060939.1 CM039048.1 97.39 True relocation, inconsistency = -1116950 11653764 11660578 3026874 3033669 NC_060939.1 CM039048.1 97.95 True relocation, inconsistency = -2597529 9084137 9091976 3054757 3062567 NC_060939.1 CM039048.1 98.83 True relocation, inconsistency = 870697 9962674 9964214 3062568 3064094 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = 1571304 11535529 11540564 3064105 3069121 NC_060939.1 CM039048.1 96.42 True relocation, inconsistency = -835693 10704872 10711329 3069122 3075526 NC_060939.1 CM039048.1 96.88 True relocation, inconsistency = 3099305 13811287 13812018 3076179 3076895 NC_060939.1 CM039048.1 96.72 True relocation, inconsistency = -4564019 9250608 9259075 3079504 3088010 NC_060939.1 CM039048.1 97.2 True relocation, inconsistency = 1918802 11178042 11181248 3088175 3091446 NC_060939.1 CM039048.1 97.3 True relocation, inconsistency = -1701247 9480002 9486902 3091447 3098384 NC_060939.1 CM039048.1 97.23 True relocation, inconsistency = 2182787 11669690 11674391 3098385 3103051 NC_060939.1 CM039048.1 97.66 True relocation, inconsistency = 50005 11724397 11729276 3103052 3107936 NC_060939.1 CM039048.1 98.08 True local misassembly 11722322 11723249 3107968 3108895 NC_060939.1 CM039048.1 98.56 True relocation, inconsistency = -3927168 7796082 7801448 3108896 3114267 NC_060939.1 CM039048.1 98.68 True local misassembly 7796082 7802366 3114268 3120572 NC_060939.1 CM039048.1 98.72 True relocation, inconsistency = 952357 8754724 8756362 3120573 3122226 NC_060939.1 CM039048.1 97.86 True relocation, inconsistency = -2355105 6402746 6405045 3123715 3126059 NC_060939.1 CM039048.1 96.81 True relocation, inconsistency = 4870971 11276017 11282602 3126060 3132760 NC_060939.1 CM039048.1 96.69 True relocation, inconsistency = 616135 11898738 11900354 3132761 3134437 NC_060939.1 CM039048.1 96.26 True relocation, inconsistency = -2420353 9480002 9486902 3134438 3141375 NC_060939.1 CM039048.1 97.2 True relocation, inconsistency = 2182787 11669690 11674391 3141376 3146042 NC_060939.1 CM039048.1 97.68 True relocation, inconsistency = 50005 11724397 11729276 3146043 3150927 NC_060939.1 CM039048.1 98.06 True relocation, inconsistency = 1541457 13271036 13273428 3151230 3153647 NC_060939.1 CM039048.1 97.3 True relocation, inconsistency = -4523264 8750165 8756367 3153648 3159835 NC_060939.1 CM039048.1 97.89 True local misassembly 8750986 8755576 3159836 3164411 NC_060939.1 CM039048.1 97.89 True local misassembly 8750165 8756367 3164412 3170599 NC_060939.1 CM039048.1 97.94 True relocation, inconsistency = -2355105 6402746 6407303 3172083 3176708 NC_060939.1 CM039048.1 96.78 True relocation, inconsistency = 4697876 11105180 11112210 3176709 3183742 NC_060939.1 CM039048.1 97.44 True relocation, inconsistency = -3513766 7598445 7603884 3183743 3189168 NC_060939.1 CM039048.1 97.66 True relocation, inconsistency = 3024193 10628078 10629966 3189169 3191057 NC_060939.1 CM039048.1 99.16 True relocation, inconsistency = -2022186 8607781 8614885 3191058 3198162 NC_060939.1 CM039048.1 99.17 True relocation, inconsistency = 2876276 11491233 11497019 3198234 3204020 NC_060939.1 CM039048.1 99.02 True local misassembly 11493432 11494690 3204021 3205279 NC_060939.1 CM039048.1 98.98 True relocation, inconsistency = -3270261 8224430 8234038 3205280 3214870 NC_060939.1 CM039048.1 97.53 True local misassembly 8228653 8233956 3214871 3220205 NC_060939.1 CM039048.1 98.01 True relocation, inconsistency = 345659 8580150 8587329 3220740 3227909 NC_060939.1 CM039048.1 98.46 True relocation, scaffold gap is present, inconsistency = 966715 9554308 9556007 3228173 3229872 NC_060939.1 CM039048.1 99.03 True relocation, inconsistency = -975855 8580153 8586297 3229873 3236032 NC_060939.1 CM039048.1 98.7 True relocation, inconsistency = -359975 8226323 8233764 3236033 3243490 NC_060939.1 CM039048.1 98.39 True relocation, inconsistency = -742797 7490968 7498903 3243491 3251386 NC_060939.1 CM039048.1 98.93 True relocation, inconsistency = 1108100 8607004 8610527 3251387 3254895 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = 4783566 13394094 13397103 3254896 3257906 NC_060939.1 CM039048.1 98.4 True relocation, inconsistency = 176590 13573694 13579710 3257907 3263868 NC_060939.1 CM039048.1 96.97 True relocation, inconsistency = -4999558 8580153 8587212 3263869 3270858 NC_060939.1 CM039048.1 97.28 True relocation, inconsistency = -837172 7750512 7757191 3271330 3277939 NC_060939.1 CM039048.1 98.19 True relocation, inconsistency = 4854941 12614060 12619030 3279867 3284852 NC_060939.1 CM039048.1 96.55 True relocation, inconsistency = -1018287 11600744 11603692 3284853 3287846 NC_060939.1 CM039048.1 95.92 True relocation, inconsistency = 1163008 12766701 12772092 3287847 3293187 NC_060939.1 CM039048.1 97.06 True relocation, inconsistency = -1011282 11760811 11768046 3293188 3300357 NC_060939.1 CM039048.1 97.46 True relocation, inconsistency = 980734 12749167 12755861 3300744 3307437 NC_060939.1 CM039048.1 97.02 True relocation, inconsistency = -710922 12046398 12053632 3308896 3316101 NC_060939.1 CM039048.1 98.76 True relocation, inconsistency = -8944 12046398 12054237 3317811 3325601 NC_060939.1 CM039048.1 98.51 True local misassembly 12052444 12053182 3325602 3326345 NC_060939.1 CM039048.1 98.2 True relocation, inconsistency = -3389981 8663583 8670367 3326727 3333461 NC_060939.1 CM039048.1 98.28 True relocation, inconsistency = 4942067 13612435 13618424 3333462 3339416 NC_060939.1 CM039048.1 95.65 True relocation, inconsistency = -45154 13573272 13579962 3339418 3346218 NC_060939.1 CM039048.1 95.48 True relocation, inconsistency = -4767904 8812059 8813631 3346219 3347786 NC_060939.1 CM039048.1 97.74 True relocation, inconsistency = -1192514 7621118 7627515 3347787 3354179 NC_060939.1 CM039048.1 97.13 True relocation, inconsistency = 4953462 12585935 12592673 3359137 3365900 NC_060939.1 CM039048.1 98.7 True relocation, inconsistency = -4784944 7820266 7822974 3378437 3381160 NC_060939.1 CM039048.1 97.58 True relocation, inconsistency = -26885 7796090 7802161 3381161 3387132 NC_060939.1 CM039048.1 96.7 True local misassembly 7798589 7799949 3387133 3388493 NC_060939.1 CM039048.1 98.83 True local misassembly 7800280 7801709 3388714 3390143 NC_060939.1 CM039048.1 99.16 True relocation, inconsistency = -310421 7492127 7498673 3390982 3397503 NC_060939.1 CM039048.1 98.78 True relocation, inconsistency = -7176 7492107 7498600 3398113 3404586 NC_060939.1 CM039048.1 98.77 True relocation, inconsistency = 669192 8169668 8170253 3406462 3407047 NC_060939.1 CM039048.1 97.28 True relocation, inconsistency = -678147 7492107 7498668 3407048 3413604 NC_060939.1 CM039048.1 98.84 True relocation, inconsistency = 669182 8169668 8175205 3415422 3420956 NC_060939.1 CM039048.1 97.58 True relocation, inconsistency = 404944 8580150 8581931 3420957 3422753 NC_060939.1 CM039048.1 98.27 True local misassembly 8580153 8587295 3422754 3429901 NC_060939.1 CM039048.1 98.29 True relocation, inconsistency = -7146 8580150 8587324 3429902 3437096 NC_060939.1 CM039048.1 98.56 True local misassembly 8581958 8585914 3437097 3441058 NC_060939.1 CM039048.1 98.55 True relocation, inconsistency = -1084838 7501077 7507857 3441059 3447824 NC_060939.1 CM039048.1 99.23 True relocation, inconsistency = 1072310 8580168 8587324 3447825 3455001 NC_060939.1 CM039048.1 98.51 True relocation, inconsistency = -806674 7780651 7785920 3455002 3460236 NC_060939.1 CM039048.1 98.91 True relocation, inconsistency = 36046 7835766 7839127 3474036 3477358 NC_060939.1 CM039048.1 97.53 True relocation, inconsistency = -313944 7529342 7531937 3481517 3484132 NC_060939.1 CM039048.1 97.96 True relocation, inconsistency = 4035886 11567824 11574397 3484133 3490611 NC_060939.1 CM039048.1 97.89 True relocation, inconsistency = -3748561 7835766 7839127 3500541 3503863 NC_060939.1 CM039048.1 97.53 True relocation, inconsistency = 2558563 10401849 10404439 3508022 3510637 NC_060939.1 CM039048.1 97.29 True relocation, inconsistency = 1163384 11567824 11574397 3510638 3517116 NC_060939.1 CM039048.1 97.89 True relocation, inconsistency = -2436740 9140949 9148361 3520408 3527755 NC_060939.1 CM039048.1 98.07 True relocation, inconsistency = 3896736 13045098 13051083 3527756 3533727 NC_060939.1 CM039048.1 98.13 True relocation, inconsistency = -1765655 11285429 11291939 3533728 3540297 NC_060939.1 CM039048.1 96.93 True relocation, inconsistency = 122096 11414036 11422022 3540298 3548249 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = -248294 11180445 11182424 3554966 3556945 NC_060939.1 CM039048.1 97.87 True relocation, inconsistency = 1035403 12217828 12222656 3556946 3561724 NC_060939.1 CM039048.1 97.35 True relocation, inconsistency = -3978999 8243991 8249070 3562058 3567092 NC_060939.1 CM039048.1 98.13 True relocation, inconsistency = 5031639 13280710 13282492 3567093 3568880 NC_060939.1 CM039048.1 97.24 True relocation, inconsistency = -1985293 11298070 11302705 3569751 3574371 NC_060939.1 CM039048.1 98.5 True relocation, inconsistency = -2909931 8392775 8406483 3574372 3588235 NC_060939.1 CM039048.1 97.14 True relocation, inconsistency = 346038 8752522 8758010 3588236 3593709 NC_060939.1 CM039048.1 97.56 True relocation, inconsistency = 1452842 10211233 10216124 3594090 3598982 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = 2436635 12652760 12655156 3598983 3601414 NC_060939.1 CM039048.1 98.05 True relocation, inconsistency = -3251742 9403415 9409290 3601415 3607305 NC_060939.1 CM039048.1 98.73 True relocation, inconsistency = -163415 9250608 9256382 3612038 3617756 NC_060939.1 CM039048.1 97.18 True relocation, inconsistency = 1448489 10704872 10711345 3617757 3624177 NC_060939.1 CM039048.1 97.48 True relocation, inconsistency = 2802684 13515825 13519797 3625973 3629965 NC_060939.1 CM039048.1 95.02 True relocation, inconsistency = -1879408 11644743 11647482 3634319 3637129 NC_060939.1 CM039048.1 97.5 True relocation, inconsistency = 76929 11724412 11728346 3637130 3641094 NC_060939.1 CM039048.1 97.85 True relocation, inconsistency = -1268664 10459683 10466117 3641095 3647474 NC_060939.1 CM039048.1 97.17 True relocation, inconsistency = -1810188 8660000 8666508 3651545 3658003 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = 2042984 10709493 10711345 3658004 3659851 NC_060939.1 CM039048.1 97.4 True relocation, inconsistency = 2689940 13401336 13406439 3659902 3664961 NC_060939.1 CM039048.1 97.77 True relocation, inconsistency = -5920343 7486312 7491581 3665177 3670396 NC_060939.1 CM039048.1 98.18 True relocation, inconsistency = 1854046 9347268 9352288 3672037 3677037 NC_060939.1 CM039048.1 98.94 True relocation, inconsistency = 1920985 11276017 11282602 3679781 3686436 NC_060939.1 CM039048.1 97.38 True relocation, inconsistency = 1448824 12731427 12735168 3686437 3690192 NC_060939.1 CM039048.1 97.63 True relocation, inconsistency = -2526096 10209226 10215894 3690346 3696975 NC_060939.1 CM039048.1 97.83 True relocation, inconsistency = -2620315 7595580 7603152 3696976 3704537 NC_060939.1 CM039048.1 98.14 True relocation, inconsistency = 4729022 12332798 12339458 3705161 3711860 NC_060939.1 CM039048.1 97.63 True relocation, inconsistency = -1202643 11136816 11141688 3711861 3716719 NC_060939.1 CM039048.1 98.25 True relocation, inconsistency = -3546109 7595580 7603067 3716720 3724196 NC_060939.1 CM039048.1 98.19 True relocation, inconsistency = 5907271 13510339 13513324 3724197 3727222 NC_060939.1 CM039048.1 96.45 True relocation, inconsistency = -7123630 6389695 6396985 3727223 3734494 NC_060939.1 CM039048.1 96.81 True relocation, inconsistency = 2800681 9198368 9205636 3735196 3742460 NC_060939.1 CM039048.1 97.95 True relocation, inconsistency = -483254 8722383 8723781 3742461 3743824 NC_060939.1 CM039048.1 97.59 True relocation, inconsistency = 4499936 13223976 13228799 3744083 3748891 NC_060939.1 CM039048.1 98.18 True relocation, inconsistency = -1704779 11528596 11532238 3753467 3757124 NC_060939.1 CM039048.1 98.51 True relocation, inconsistency = 1053696 12585935 12589031 3757125 3760181 NC_060939.1 CM039048.1 98.27 True relocation, inconsistency = -3397829 9191203 9198456 3760182 3767446 NC_060939.1 CM039048.1 98.43 True local misassembly 9200261 9205636 3767447 3772828 NC_060939.1 CM039048.1 97.82 True relocation, inconsistency = 4419400 13625037 13628441 3772829 3776218 NC_060939.1 CM039048.1 98.3 True relocation, inconsistency = -4909839 8718603 8723781 3776219 3781348 NC_060939.1 CM039048.1 97.59 True relocation, inconsistency = 3438296 12162336 12167159 3781607 3786415 NC_060939.1 CM039048.1 98.22 True relocation, inconsistency = -598855 11569392 11576628 3787503 3794729 NC_060939.1 CM039048.1 98.51 True relocation, inconsistency = -1018523 10558106 10561572 3794730 3798186 NC_060939.1 CM039048.1 97.72 True local misassembly 10558000 10560294 3798187 3800471 NC_060939.1 CM039048.1 97.2 True relocation, inconsistency = -785544 9774751 9785105 3800472 3810759 NC_060939.1 CM039048.1 98.07 True relocation, inconsistency = 925164 10710270 10711345 3810760 3811830 NC_060939.1 CM039048.1 97.44 True relocation, inconsistency = -1486072 9248801 9257391 3835358 3843932 NC_060939.1 CM039048.1 97.91 True relocation, inconsistency = -859685 8397707 8402913 3843933 3849174 NC_060939.1 CM039048.1 97.6 True relocation, inconsistency = 847161 9250608 9259076 3849708 3858180 NC_060939.1 CM039048.1 97.78 True relocation, inconsistency = 3932411 13191488 13196029 3858181 3862750 NC_060939.1 CM039048.1 98.38 True relocation, inconsistency = -7190424 6009035 6009968 3866180 3867110 NC_060939.1 CM039048.1 97.64 True relocation, inconsistency = 7774143 13786780 13787511 3869779 3870494 NC_060939.1 CM039048.1 96.04 True relocation, inconsistency = -600874 13191069 13196029 3874926 3879925 NC_060939.1 CM039048.1 98.38 True relocation, inconsistency = -3518684 9678679 9681352 3881259 3883919 NC_060939.1 CM039048.1 97.8 True relocation, inconsistency = 3509716 13191069 13196029 3883920 3888919 NC_060939.1 CM039048.1 98.4 True relocation, inconsistency = -3518684 9678679 9682405 3890253 3893981 NC_060939.1 CM039048.1 98.22 True relocation, inconsistency = 2042001 11724407 11730448 3893982 3900043 NC_060939.1 CM039048.1 97.94 True relocation, inconsistency = -450050 11280399 11284413 3900044 3904108 NC_060939.1 CM039048.1 97.39 True relocation, inconsistency = 1445251 12730302 12733882 3904746 3908356 NC_060939.1 CM039048.1 98.01 True local misassembly 12739255 12747847 3908357 3916914 NC_060939.1 CM039048.1 97.21 True relocation, inconsistency = -5170154 7577694 7580312 3916915 3919568 NC_060939.1 CM039048.1 97.16 True relocation, inconsistency = -1203330 6377707 6379701 3920293 3922264 NC_060939.1 CM039048.1 97.17 True relocation, inconsistency = 5351400 11731102 11738228 3922265 3929336 NC_060939.1 CM039048.1 97.66 True relocation, inconsistency = -2335324 9403410 9409713 3929842 3936150 NC_060939.1 CM039048.1 98.69 True relocation, inconsistency = 3316188 12726247 12735643 3936496 3945866 NC_060939.1 CM039048.1 96.94 True relocation, inconsistency = -3328666 9407182 9412304 3946071 3951206 NC_060939.1 CM039048.1 95.47 True relocation, inconsistency = 1922718 11335460 11342353 3951644 3958512 NC_060939.1 CM039048.1 97.13 True relocation, inconsistency = -1935381 9407153 9412304 3958693 3963789 NC_060939.1 CM039048.1 96.3 True local misassembly 9407153 9411815 3964085 3968687 NC_060939.1 CM039048.1 96.32 True relocation, inconsistency = -1922074 7489742 7497083 3968688 3976039 NC_060939.1 CM039048.1 98.9 True relocation, inconsistency = 6310494 13807578 13809205 3976040 3977667 NC_060939.1 CM039048.1 95.83 True relocation, inconsistency = -6319464 7489742 7497083 3977668 3985019 NC_060939.1 CM039048.1 98.91 True relocation, inconsistency = 1059707 8556791 8560836 3985020 3989065 NC_060939.1 CM039048.1 98.53 True relocation, inconsistency = 2520583 11082575 11085335 3990221 3992963 NC_060939.1 CM039048.1 96.47 True relocation, inconsistency = 207151 11292487 11297440 3992964 3997958 NC_060939.1 CM039048.1 96.17 True relocation, inconsistency = -1908379 9403410 9409713 4012307 4018615 NC_060939.1 CM039048.1 98.7 True relocation, inconsistency = 3316188 12726247 12735643 4018961 4028331 NC_060939.1 CM039048.1 96.95 True relocation, inconsistency = -3328666 9407182 9409688 4028536 4031086 NC_060939.1 CM039048.1 95.49 True relocation, inconsistency = -1656423 7753266 7759087 4031087 4036957 NC_060939.1 CM039048.1 97.89 True relocation, inconsistency = 1643880 9403425 9407152 4037415 4041157 NC_060939.1 CM039048.1 98.29 True indel: stretch of mismatches 9407153 9411815 4041158 4045760 NC_060939.1 CM039048.1 96.34 True relocation, inconsistency = 779173 10190989 10198356 4045761 4053118 NC_060939.1 CM039048.1 98.69 True relocation, inconsistency = 1293873 11492230 11493851 4053119 4054740 NC_060939.1 CM039048.1 99.07 True relocation, inconsistency = -1302863 10190989 10198356 4054741 4062098 NC_060939.1 CM039048.1 98.7 True relocation, inconsistency = -1641560 8556797 8560836 4062099 4066138 NC_060939.1 CM039048.1 98.53 True relocation, inconsistency = 2520583 11082575 11084825 4067294 4069525 NC_060939.1 CM039048.1 96.53 True relocation, inconsistency = -3598244 7486582 7491848 4069526 4074732 NC_060939.1 CM039048.1 98.06 True relocation, inconsistency = 3871781 11373020 11379460 4084123 4090537 NC_060939.1 CM039048.1 97.91 True relocation, inconsistency = -815072 10564881 10569694 4091030 4095823 NC_060939.1 CM039048.1 97.37 True relocation, inconsistency = -1321462 9248233 9251949 4095824 4099530 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = -1656095 7595855 7603149 4099531 4106804 NC_060939.1 CM039048.1 98.04 True relocation, inconsistency = 5909001 13512151 13513829 4106805 4108469 NC_060939.1 CM039048.1 96.42 True local misassembly 13510277 13515065 4108470 4113288 NC_060939.1 CM039048.1 96.48 True relocation, inconsistency = -968360 12546706 12552734 4113289 4119313 NC_060939.1 CM039048.1 97.19 True relocation, inconsistency = -3922252 8630483 8632714 4119314 4121530 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = 617893 9250608 9253885 4121531 4124787 NC_060939.1 CM039048.1 97.24 True relocation, inconsistency = 4509561 13763447 13770367 4124788 4131683 NC_060939.1 CM039048.1 97.14 True relocation, inconsistency = -4572345 9198368 9205636 4132029 4139283 NC_060939.1 CM039048.1 97.79 True relocation, inconsistency = 4022094 13227731 13228799 4139284 4140352 NC_060939.1 CM039048.1 98.0 True local misassembly 13223976 13228109 4140906 4144997 NC_060939.1 CM039048.1 97.62 True relocation, inconsistency = -1658718 11569392 11579743 4144998 4155334 NC_060939.1 CM039048.1 98.01 True relocation, inconsistency = -3174665 8410012 8411315 4160268 4161571 NC_060939.1 CM039048.1 98.93 True relocation, inconsistency = -1842163 6569153 6573497 4161572 4165898 NC_060939.1 CM039048.1 96.67 True relocation, inconsistency = 3991184 10565305 10570280 4166522 4171472 NC_060939.1 CM039048.1 97.46 True relocation, inconsistency = -1319673 9250608 9259076 4171473 4179930 NC_060939.1 CM039048.1 97.66 True relocation, inconsistency = 1846891 11106018 11107365 4179981 4181329 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = -1569912 9537454 9542097 4181330 4185940 NC_060939.1 CM039048.1 97.88 True relocation, inconsistency = 2182314 11724412 11728913 4185941 4190462 NC_060939.1 CM039048.1 97.88 True relocation, inconsistency = 937921 12666835 12670427 4190463 4194005 NC_060939.1 CM039048.1 96.87 True local misassembly 12666835 12672662 4194006 4199814 NC_060939.1 CM039048.1 97.78 True relocation, inconsistency = -3932555 8740108 8747659 4199815 4207325 NC_060939.1 CM039048.1 97.5 True relocation, inconsistency = -1350808 7396852 7400443 4207326 4210922 NC_060939.1 CM039048.1 96.58 True relocation, inconsistency = 4983659 12384103 12392598 4210923 4219396 NC_060939.1 CM039048.1 98.01 True relocation, inconsistency = 913555 13306154 13308553 4219397 4221771 NC_060939.1 CM039048.1 97.37 True relocation, inconsistency = -4791957 8516597 8521610 4221772 4226781 NC_060939.1 CM039048.1 96.33 True relocation, inconsistency = 197143 8718754 8722491 4226782 4230515 NC_060939.1 CM039048.1 97.62 True relocation, inconsistency = 1608110 10330602 10334206 4230516 4234130 NC_060939.1 CM039048.1 97.84 True relocation, inconsistency = 988241 11322448 11330324 4234131 4242022 NC_060939.1 CM039048.1 97.03 True relocation, inconsistency = 1336135 12666840 12670422 4242403 4245990 NC_060939.1 CM039048.1 97.58 True relocation, inconsistency = -3905418 8765005 8772333 4245991 4253371 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = -73756 8698578 8704180 4253372 4258875 NC_060939.1 CM039048.1 96.54 True relocation, inconsistency = 2001757 10706343 10713074 4259281 4266039 NC_060939.1 CM039048.1 95.74 True relocation, inconsistency = 2107808 12820889 12827743 4266046 4272896 NC_060939.1 CM039048.1 98.47 True relocation, inconsistency = -2302999 10524745 10528117 4272897 4276204 NC_060939.1 CM039048.1 95.23 True relocation, inconsistency = -1706127 8821991 8824885 4276205 4279029 NC_060939.1 CM039048.1 96.96 True relocation, inconsistency = 3905449 12730335 12738567 4279030 4287322 NC_060939.1 CM039048.1 97.71 True relocation, inconsistency = -728802 12009766 12015758 4287323 4293345 NC_060939.1 CM039048.1 98.03 True relocation, inconsistency = 368364 12384123 12392006 4293346 4301231 NC_060939.1 CM039048.1 98.07 True relocation, inconsistency = -2977036 9414971 9415803 4301232 4302064 NC_060939.1 CM039048.1 96.73 True relocation, inconsistency = 2832623 12248427 12254521 4302065 4308094 NC_060939.1 CM039048.1 96.87 True relocation, inconsistency = -4026297 8228225 8231103 4308095 4310973 NC_060939.1 CM039048.1 96.94 True relocation, inconsistency = 2095765 10327005 10341344 4311110 4325505 NC_060939.1 CM039048.1 98.16 True relocation, inconsistency = -1882434 8458911 8464288 4325506 4330878 NC_060939.1 CM039048.1 97.21 True relocation, inconsistency = 1862713 10327002 10337778 4330879 4341681 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = -779667 9558112 9562799 4341682 4346369 NC_060939.1 CM039048.1 97.37 True relocation, inconsistency = 3104040 12666840 12673782 4346370 4353338 NC_060939.1 CM039048.1 97.79 True relocation, inconsistency = -3851846 8822221 8829880 4353623 4361191 NC_060939.1 CM039048.1 97.15 True relocation, inconsistency = -1118964 7710917 7715783 4361192 4366072 NC_060939.1 CM039048.1 98.28 True relocation, inconsistency = 1099199 8815320 8816848 4366410 4367933 NC_060939.1 CM039048.1 95.82 True local misassembly 8822221 8829880 4367934 4375503 NC_060939.1 CM039048.1 97.04 True relocation, inconsistency = 1865384 10695265 10697366 4375504 4377587 NC_060939.1 CM039048.1 97.02 True relocation, inconsistency = -1964101 8738681 8744203 4383003 4388540 NC_060939.1 CM039048.1 98.27 True relocation, inconsistency = 3641780 12385984 12387985 4388541 4390512 NC_060939.1 CM039048.1 97.94 True relocation, inconsistency = 430146 12818132 12822350 4390513 4394791 NC_060939.1 CM039048.1 97.16 True relocation, inconsistency = -73180 12749171 12756852 4394792 4402498 NC_060939.1 CM039048.1 97.58 True relocation, inconsistency = -3346566 9410287 9416109 4402499 4408271 NC_060939.1 CM039048.1 97.43 True relocation, inconsistency = 2338817 11755834 11757765 4409179 4411105 NC_060939.1 CM039048.1 98.17 True relocation, inconsistency = -4162035 7595731 7600454 4411106 4415797 NC_060939.1 CM039048.1 97.52 True relocation, inconsistency = 1210429 8810884 8818352 4415798 4423266 NC_060939.1 CM039048.1 96.57 True relocation, inconsistency = 682911 9501264 9502325 4423267 4424328 NC_060939.1 CM039048.1 97.85 True relocation, inconsistency = 2440133 11942459 11947754 4424329 4429525 NC_060939.1 CM039048.1 97.21 True relocation, inconsistency = -220011 11728987 11734783 4430769 4436594 NC_060939.1 CM039048.1 97.13 True relocation, inconsistency = -4138683 7596101 7601012 4436595 4441469 NC_060939.1 CM039048.1 97.59 True relocation, inconsistency = 1221208 8822221 8829329 4441470 4448571 NC_060939.1 CM039048.1 98.32 True local misassembly 8823939 8829329 4448572 4453956 NC_060939.1 CM039048.1 97.83 True relocation, inconsistency = 4633904 13463234 13464563 4453957 4455311 NC_060939.1 CM039048.1 96.89 True relocation, inconsistency = -1795119 11669445 11674861 4455312 4460718 NC_060939.1 CM039048.1 97.91 True relocation, inconsistency = 1786120 13460982 13467806 4460719 4467538 NC_060939.1 CM039048.1 97.08 True local misassembly 13469600 13471684 4467539 4469589 NC_060939.1 CM039048.1 97.6 True relocation, inconsistency = -1087172 12384513 12386358 4469590 4471451 NC_060939.1 CM039048.1 97.01 True relocation, inconsistency = -3659780 8726579 8732015 4471452 4476868 NC_060939.1 CM039048.1 98.29 True fake: not a misassembly (possible transposable element) 12382787 12389611 4476869 4483684 NC_060939.1 CM039048.1 97.18 True fake: not a misassembly (possible transposable element) 8737373 8744992 4484030 4491649 NC_060939.1 CM039048.1 98.25 True relocation, inconsistency = 3475183 12220176 12224193 4491650 4495666 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = -3493678 8731029 8731996 4496180 4497147 NC_060939.1 CM039048.1 98.95 True relocation, inconsistency = 758214 9490211 9493858 4497148 4500810 NC_060939.1 CM039048.1 98.15 True local misassembly 9490271 9497025 4500811 4507625 NC_060939.1 CM039048.1 97.41 True relocation, inconsistency = -197293 9299733 9305148 4507626 4513051 NC_060939.1 CM039048.1 96.65 True relocation, inconsistency = 146208 9451357 9454400 4513052 4516106 NC_060939.1 CM039048.1 97.49 True relocation, inconsistency = 35810 9490211 9495690 4516107 4521576 NC_060939.1 CM039048.1 98.27 True relocation, inconsistency = -197223 9298468 9308899 4521577 4532163 NC_060939.1 CM039048.1 97.22 True relocation, inconsistency = -28654 9280246 9283845 4532164 4535788 NC_060939.1 CM039048.1 97.23 True relocation, inconsistency = 3054468 12338314 12342661 4535789 4540167 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = -3043673 9298989 9302559 4540168 4543728 NC_060939.1 CM039048.1 96.74 True local misassembly 9297203 9302217 4543729 4548768 NC_060939.1 CM039048.1 97.58 True relocation, inconsistency = -480227 8821991 8829310 4548769 4556087 NC_060939.1 CM039048.1 97.92 True relocation, inconsistency = -7181 8822221 8829329 4556179 4563222 NC_060939.1 CM039048.1 97.56 True relocation, inconsistency = -1183534 7645796 7649006 4563223 4566444 NC_060939.1 CM039048.1 97.89 True relocation, inconsistency = 1172756 8822221 8827049 4566903 4571745 NC_060939.1 CM039048.1 98.33 True relocation, inconsistency = -16166 8810884 8818118 4571746 4578945 NC_060939.1 CM039048.1 97.19 True relocation, inconsistency = 116658 8934777 8943389 4578946 4587513 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = -213603 8729787 8734617 4587514 4592364 NC_060939.1 CM039048.1 98.02 True indel: stretch of mismatches 8735035 8736866 4592782 4594603 NC_060939.1 CM039048.1 98.57 True relocation, inconsistency = 752827 9489694 9497020 4594604 4601945 NC_060939.1 CM039048.1 97.76 True relocation, inconsistency = -7216 9490211 9497025 4602352 4609161 NC_060939.1 CM039048.1 98.44 True local misassembly 9491614 9495612 4609162 4613155 NC_060939.1 CM039048.1 98.44 True local misassembly 9490211 9497025 4613156 4619965 NC_060939.1 CM039048.1 98.41 True local misassembly 9491614 9495612 4619966 4623959 NC_060939.1 CM039048.1 98.45 True local misassembly 9490211 9495612 4623960 4629346 NC_060939.1 CM039048.1 98.22 True local misassembly 9490211 9497025 4629347 4636156 NC_060939.1 CM039048.1 98.41 True local misassembly 9491614 9497025 4636157 4641558 NC_060939.1 CM039048.1 98.42 True relocation, inconsistency = 3926255 13423477 13424343 4641755 4642621 NC_060939.1 CM039048.1 99.08 True indel: stretch of mismatches 13424508 13426132 4642786 4644410 NC_060939.1 CM039048.1 98.83 True indel: indel (<= 5bp) 13426133 13426899 4644416 4645182 NC_060939.1 CM039048.1 98.57 True local misassembly 13427052 13428033 4646035 4647016 NC_060939.1 CM039048.1 98.78 True relocation, inconsistency = -838574 12590370 12593376 4647927 4650893 NC_060939.1 CM039048.1 97.65 True relocation, inconsistency = -3856004 8737373 8743674 4650894 4657180 NC_060939.1 CM039048.1 98.64 True relocation, inconsistency = 1417842 10161517 10162352 4657181 4658017 NC_060939.1 CM039048.1 96.9 True relocation, inconsistency = 3252302 13414655 13421380 4658018 4664753 NC_060939.1 CM039048.1 98.22 True relocation, inconsistency = -3538795 9882586 9883665 4664754 4665833 NC_060939.1 CM039048.1 97.38 True relocation, inconsistency = -586483 9297183 9308152 4665834 4676783 NC_060939.1 CM039048.1 97.57 True relocation, inconsistency = -2926751 6381402 6384169 4676784 4679531 NC_060939.1 CM039048.1 97.13 True relocation, inconsistency = 2914223 9298393 9301026 4679532 4682190 NC_060939.1 CM039048.1 96.79 True relocation, inconsistency = 4332803 13633830 13640798 4682191 4689255 NC_060939.1 CM039048.1 95.2 True relocation, inconsistency = -4366698 9274101 9274718 4689256 4689873 NC_060939.1 CM039048.1 98.35 True indel: indel (> 5bp) 9274822 9275543 4689992 4690713 NC_060939.1 CM039048.1 98.48 True relocation, inconsistency = 2352548 11628250 11629209 4690872 4691841 NC_060939.1 CM039048.1 96.21 True relocation, inconsistency = 339406 11968798 11969505 4692024 4692731 NC_060939.1 CM039048.1 97.74 True relocation, inconsistency = 248978 12218740 12222084 4692988 4696317 NC_060939.1 CM039048.1 95.32 True relocation, inconsistency = -2538735 9683350 9684425 4696318 4697398 NC_060939.1 CM039048.1 96.01 True fake: not a misassembly (possible transposable element) 6390522 6393733 4697900 4701111 NC_060939.1 CM039048.1 95.79 True fake: not a misassembly (possible transposable element) 9685286 9686210 4701112 4702046 NC_060939.1 CM039048.1 95.59 True relocation, inconsistency = 554801 10241513 10242745 4702548 4703780 NC_060939.1 CM039048.1 97.81 True indel: indel (> 5bp) 10243110 10243694 4704160 4704744 NC_060939.1 CM039048.1 98.63 True indel: indel (> 5bp) 10243695 10244249 4704775 4705329 NC_060939.1 CM039048.1 98.02 True relocation, inconsistency = -564699 9680637 9683289 4706416 4709069 NC_060939.1 CM039048.1 97.48 True local misassembly 9685390 9688702 4709376 4712678 NC_060939.1 CM039048.1 95.1 True relocation, inconsistency = -525866 9164212 9166360 4714054 4716177 NC_060939.1 CM039048.1 97.34 True relocation, inconsistency = -2777502 6388859 6391712 4716178 4719017 NC_060939.1 CM039048.1 96.31 True fake: not a misassembly (possible transposable element) 8974388 8975095 4720336 4721043 NC_060939.1 CM039048.1 97.46 True fake: not a misassembly (possible transposable element) 6390508 6393733 4721546 4724771 NC_060939.1 CM039048.1 95.59 True fake: not a misassembly (possible transposable element) 9685286 9686210 4724772 4725701 NC_060939.1 CM039048.1 95.7 True fake: not a misassembly (possible transposable element) 6390508 6393215 4726203 4728915 NC_060939.1 CM039048.1 95.89 True relocation, inconsistency = 3291567 9684783 9686210 4728916 4730363 NC_060939.1 CM039048.1 95.56 True relocation, inconsistency = 2680828 12367544 12368179 4730869 4731504 NC_060939.1 CM039048.1 97.33 True local misassembly 12369474 12370331 4732789 4733646 NC_060939.1 CM039048.1 98.25 True relocation, inconsistency = 555429 12926415 12927691 4734301 4735562 NC_060939.1 CM039048.1 97.42 True relocation, inconsistency = -3413860 9514818 9515390 4736549 4737121 NC_060939.1 CM039048.1 97.91 True indel: indel (> 5bp) 9515391 9515968 4737137 4737714 NC_060939.1 CM039048.1 98.1 True indel: indel (> 5bp) 9516224 9516825 4737995 4738596 NC_060939.1 CM039048.1 97.51 True indel: indel (> 5bp) 9516862 9517517 4738622 4739277 NC_060939.1 CM039048.1 97.1 True indel: indel (> 5bp) 9517929 9518587 4739739 4740397 NC_060939.1 CM039048.1 96.81 True relocation, inconsistency = 167374 9685967 9686659 4740403 4741095 NC_060939.1 CM039048.1 97.11 True local misassembly 9687859 9688702 4742245 4743088 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = -3299777 6390347 6393733 4744510 4747881 NC_060939.1 CM039048.1 95.42 True relocation, inconsistency = 3352637 9746371 9747060 4747882 4748571 NC_060939.1 CM039048.1 95.23 True relocation, inconsistency = -583383 9164202 9165869 4749096 4750758 NC_060939.1 CM039048.1 98.2 True relocation, inconsistency = 519485 9685500 9687178 4750904 4752582 NC_060939.1 CM039048.1 95.23 True local misassembly 9685390 9688702 4752583 4755885 NC_060939.1 CM039048.1 95.07 True relocation, inconsistency = -9958 9680636 9683279 4757777 4760405 NC_060939.1 CM039048.1 96.98 True local misassembly 9685967 9686722 4761314 4762069 NC_060939.1 CM039048.1 96.96 True relocation, inconsistency = 75621 9762946 9764474 4762672 4764210 NC_060939.1 CM039048.1 95.05 True relocation, inconsistency = 3499452 13265223 13270150 4765507 4770373 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = -3507662 9762946 9764474 4770831 4772369 NC_060939.1 CM039048.1 95.05 True relocation, inconsistency = -85559 9680636 9683279 4774090 4776718 NC_060939.1 CM039048.1 97.06 True local misassembly 9685967 9686722 4777627 4778382 NC_060939.1 CM039048.1 96.83 True local misassembly 9687859 9688702 4779484 4780327 NC_060939.1 CM039048.1 96.56 True relocation, inconsistency = -3051652 6638564 6644320 4781841 4787547 NC_060939.1 CM039048.1 95.94 True fake: not a misassembly (possible transposable element) 9582825 9583330 4788968 4789472 NC_060939.1 CM039048.1 97.63 True fake: not a misassembly (possible transposable element) 6645862 6651570 4790092 4795731 NC_060939.1 CM039048.1 95.19 True relocation, inconsistency = -7612 6647576 6651864 4799349 4803601 NC_060939.1 CM039048.1 95.52 True relocation, inconsistency = 3036242 9689153 9690820 4804648 4806308 NC_060939.1 CM039048.1 96.59 True relocation, inconsistency = -3414542 6276446 6277835 4806476 4807865 NC_060939.1 CM039048.1 96.91 True relocation, inconsistency = 3025873 9304584 9305978 4808741 4810150 NC_060939.1 CM039048.1 96.1 True local misassembly 9306500 9307756 4810657 4811938 NC_060939.1 CM039048.1 95.63 True relocation, inconsistency = 379100 9687186 9688702 4812268 4813753 NC_060939.1 CM039048.1 95.19 True relocation, inconsistency = 4079685 13768763 13769589 4814129 4814955 NC_060939.1 CM039048.1 96.61 True relocation, inconsistency = -7125335 6645593 6646859 4816294 4817576 NC_060939.1 CM039048.1 95.44 True relocation, inconsistency = 845966 7492826 7497143 4817577 4821914 NC_060939.1 CM039048.1 98.25 True relocation, inconsistency = 5225554 12722698 12732363 4821915 4831610 NC_060939.1 CM039048.1 98.43 True relocation, inconsistency = -1016619 11715812 11726469 4831678 4842392 NC_060939.1 CM039048.1 97.68 True relocation, inconsistency = -10724 11715812 11728783 4842459 4855487 NC_060939.1 CM039048.1 97.74 True relocation, inconsistency = 657954 12386738 12392630 4855488 4861322 NC_060939.1 CM039048.1 97.57 True relocation, inconsistency = -3665170 8728394 8733235 4862256 4867062 NC_060939.1 CM039048.1 97.82 True local misassembly 8738633 8745034 4867063 4873474 NC_060939.1 CM039048.1 98.51 True local misassembly 8741432 8744602 4873475 4876655 NC_060939.1 CM039048.1 98.49 True relocation, inconsistency = 553805 9298408 9305359 4876656 4883677 NC_060939.1 CM039048.1 97.05 True relocation, inconsistency = 186484 9491844 9495805 4883678 4887634 NC_060939.1 CM039048.1 98.2 True local misassembly 9490404 9497025 4887635 4894232 NC_060939.1 CM039048.1 97.98 True relocation, inconsistency = 3050896 12547922 12548961 4894233 4895267 NC_060939.1 CM039048.1 97.38 True relocation, inconsistency = -4078064 8470898 8474587 4895268 4898942 NC_060939.1 CM039048.1 97.41 True relocation, inconsistency = 3778853 12253441 12262568 4898943 4908004 NC_060939.1 CM039048.1 97.6 True relocation, inconsistency = -2783980 9478589 9481111 4908005 4910557 NC_060939.1 CM039048.1 97.56 True relocation, inconsistency = 2760672 12241784 12244483 4910558 4913247 NC_060939.1 CM039048.1 98.03 True relocation, inconsistency = -2947154 9297330 9302812 4913248 4918724 NC_060939.1 CM039048.1 97.34 True relocation, inconsistency = -414035 8888855 8895619 4918802 4925496 NC_060939.1 CM039048.1 97.35 True relocation, inconsistency = 402341 9298119 9302812 4925655 4930338 NC_060939.1 CM039048.1 97.3 True local misassembly 9298327 9304560 4931210 4937463 NC_060939.1 CM039048.1 97.08 True relocation, inconsistency = 4194885 13499446 13502831 4937464 4940829 NC_060939.1 CM039048.1 96.52 True relocation, inconsistency = -177141 13325691 13334934 4940830 4950007 NC_060939.1 CM039048.1 97.78 True relocation, inconsistency = -4033926 9301009 9308152 4950008 4957141 NC_060939.1 CM039048.1 97.47 True relocation, inconsistency = 3593011 12901164 12904849 4957142 4960784 NC_060939.1 CM039048.1 97.49 True relocation, inconsistency = 716398 13621248 13631328 4960785 4970871 NC_060939.1 CM039048.1 97.88 True relocation, inconsistency = -4743175 8888613 8895619 4971331 4978277 NC_060939.1 CM039048.1 97.34 True relocation, inconsistency = 402341 9298119 9301770 4978436 4982087 NC_060939.1 CM039048.1 97.7 True relocation, inconsistency = 2932822 12234593 12239984 4982088 4987434 NC_060939.1 CM039048.1 97.68 True relocation, inconsistency = -2952546 9287439 9296072 4987435 4996063 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = 84016 9380425 9384187 4996400 5000163 NC_060939.1 CM039048.1 98.03 True relocation, inconsistency = 28697 9412885 9418221 5000164 5005415 NC_060939.1 CM039048.1 97.42 True relocation, inconsistency = 2846996 12265218 12271362 5005416 5011550 NC_060939.1 CM039048.1 98.67 True relocation, inconsistency = 128255 12399618 12403658 5011551 5015676 NC_060939.1 CM039048.1 95.6 True relocation, inconsistency = -65772 12338145 12343845 5015935 5021671 NC_060939.1 CM039048.1 98.36 True relocation, inconsistency = -2941795 9402051 9409677 5021672 5029278 NC_060939.1 CM039048.1 96.67 True local misassembly 9404331 9405384 5029279 5030332 NC_060939.1 CM039048.1 99.15 True relocation, inconsistency = -656767 8748799 8757403 5030514 5039148 NC_060939.1 CM039048.1 97.13 True relocation, inconsistency = 4879336 13636740 13640715 5039149 5043149 NC_060939.1 CM039048.1 97.1 True relocation, inconsistency = -7368062 6272654 6276015 5043150 5046517 NC_060939.1 CM039048.1 95.91 True local misassembly 6274555 6277287 5046901 5049629 NC_060939.1 CM039048.1 95.88 True relocation, inconsistency = 7000385 13277673 13283405 5049630 5055412 NC_060939.1 CM039048.1 96.44 True relocation, inconsistency = 513381 13797419 13798843 5056045 5057459 NC_060939.1 CM039048.1 96.43 True relocation, inconsistency = -4110313 9689176 9690748 5058105 5059682 NC_060939.1 CM039048.1 97.21 True relocation, inconsistency = -2920980 6771036 6776049 5060950 5065944 NC_060939.1 CM039048.1 96.37 True relocation, inconsistency = 6958984 13735345 13735975 5066256 5066885 NC_060939.1 CM039048.1 96.99 True relocation, inconsistency = -7097959 6638512 6644320 5067381 5073139 NC_060939.1 CM039048.1 95.87 True relocation, inconsistency = 3043382 9687859 9688702 5073296 5074139 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = -3707693 5981336 5981917 5074466 5075046 NC_060939.1 CM039048.1 97.08 True relocation, inconsistency = 661483 6643893 6650804 5075539 5082386 NC_060939.1 CM039048.1 95.21 True relocation, inconsistency = 2931643 9582825 9583330 5082764 5083268 NC_060939.1 CM039048.1 97.63 True relocation, inconsistency = 98098 9681787 9683316 5083627 5085155 NC_060939.1 CM039048.1 98.3 True local misassembly 9686032 9686722 5086077 5086767 NC_060939.1 CM039048.1 97.83 True local misassembly 9687859 9688648 5087884 5088673 NC_060939.1 CM039048.1 96.58 True fake: not a misassembly (possible transposable element) 10592849 10596110 5090051 5093298 NC_060939.1 CM039048.1 97.49 True fake: not a misassembly (possible transposable element) 9687159 9688686 5093594 5095086 NC_060939.1 CM039048.1 95.29 True relocation, inconsistency = 973377 10664170 10664751 5097193 5097774 NC_060939.1 CM039048.1 96.91 True relocation, inconsistency = -4183205 6482075 6485458 5098303 5101664 NC_060939.1 CM039048.1 95.3 True relocation, inconsistency = 4445909 10931368 10932296 5101665 5102598 NC_060939.1 CM039048.1 95.18 True fake: not a misassembly (possible transposable element) 8874357 8877003 5102855 5105495 NC_060939.1 CM039048.1 95.22 True fake: not a misassembly (possible transposable element) 10929811 10932296 5105882 5108373 NC_060939.1 CM039048.1 95.13 True fake: not a misassembly (possible transposable element) 8874357 8877003 5108630 5111265 NC_060939.1 CM039048.1 95.4 True fake: not a misassembly (possible transposable element) 10931572 10932296 5113424 5114148 NC_060939.1 CM039048.1 97.93 True relocation, inconsistency = 1434726 12367544 12368179 5114670 5115305 NC_060939.1 CM039048.1 97.8 True relocation, inconsistency = -4023345 8345887 8346569 5116358 5117040 NC_060939.1 CM039048.1 97.36 True relocation, inconsistency = -1657411 6690479 6695338 5118361 5123230 NC_060939.1 CM039048.1 95.35 True relocation, inconsistency = 2823935 9519274 9521328 5123231 5125269 NC_060939.1 CM039048.1 95.46 True relocation, inconsistency = 240671 9762885 9763437 5126155 5126707 NC_060939.1 CM039048.1 96.02 True relocation, inconsistency = -77533 9687141 9688686 5127944 5129484 NC_060939.1 CM039048.1 95.44 True relocation, inconsistency = -525332 9164207 9166955 5130337 5133074 NC_060939.1 CM039048.1 98.04 True relocation, inconsistency = 4351528 13518484 13519541 5133075 5134162 NC_060939.1 CM039048.1 95.81 True relocation, inconsistency = -556993 12962549 12967471 5134163 5139100 NC_060939.1 CM039048.1 97.15 True local misassembly 12962549 12967471 5139549 5144486 NC_060939.1 CM039048.1 97.17 True relocation, inconsistency = 399608 13371564 13376624 5148971 5153911 NC_060939.1 CM039048.1 95.3 True relocation, inconsistency = -1766382 11611476 11615801 5155145 5159490 NC_060939.1 CM039048.1 96.77 True relocation, inconsistency = 1165977 12781875 12782537 5159587 5160249 NC_060939.1 CM039048.1 98.34 True relocation, inconsistency = 841093 13623816 13626409 5160435 5162998 NC_060939.1 CM039048.1 97.07 True relocation, inconsistency = -2379720 11247091 11248505 5163400 5164814 NC_060939.1 CM039048.1 98.52 True relocation, inconsistency = 576897 11825745 11826549 5165157 5165961 NC_060939.1 CM039048.1 97.76 True indel: indel (<= 5bp) 11826552 11827247 5165962 5166657 NC_060939.1 CM039048.1 98.28 True local misassembly 11827567 11830057 5167232 5169722 NC_060939.1 CM039048.1 97.83 True local misassembly 11827581 11830057 5169809 5172285 NC_060939.1 CM039048.1 98.1 True relocation, inconsistency = -2362287 9467857 9469479 5172372 5173999 NC_060939.1 CM039048.1 97.24 True relocation, inconsistency = 3990364 13460201 13464279 5174357 5178421 NC_060939.1 CM039048.1 95.06 True relocation, inconsistency = -4012691 9451679 9456712 5178512 5183540 NC_060939.1 CM039048.1 95.25 True relocation, inconsistency = 28691 9485775 9486501 5183912 5184638 NC_060939.1 CM039048.1 97.94 True indel: indel (<= 5bp) 9486502 9487071 5184640 5185209 NC_060939.1 CM039048.1 98.6 True indel: indel (> 5bp) 9487484 9488279 5185672 5186467 NC_060939.1 CM039048.1 97.24 True indel: indel (<= 5bp) 9488280 9488928 5186469 5187117 NC_060939.1 CM039048.1 97.38 True relocation, inconsistency = -14489 9474869 9475888 5187547 5188566 NC_060939.1 CM039048.1 97.25 True indel: indel (> 5bp) 9475895 9476627 5188567 5189299 NC_060939.1 CM039048.1 97.14 True indel: indel (> 5bp) 9477073 9478143 5189735 5190805 NC_060939.1 CM039048.1 98.51 True indel: indel (> 5bp) 9478581 9479121 5191263 5191803 NC_060939.1 CM039048.1 97.97 True indel: indel (> 5bp) 9479137 9480026 5191804 5192693 NC_060939.1 CM039048.1 96.74 True local misassembly 9474869 9475888 5193123 5194142 NC_060939.1 CM039048.1 97.25 True indel: indel (> 5bp) 9475895 9476627 5194143 5194875 NC_060939.1 CM039048.1 97.82 True indel: indel (> 5bp) 9477073 9478143 5195311 5196381 NC_060939.1 CM039048.1 98.6 True indel: indel (> 5bp) 9478581 9479121 5196839 5197379 NC_060939.1 CM039048.1 97.78 True indel: indel (> 5bp) 9479137 9480026 5197380 5198269 NC_060939.1 CM039048.1 96.74 True local misassembly 9474869 9475888 5198699 5199718 NC_060939.1 CM039048.1 97.35 True indel: indel (> 5bp) 9475895 9476627 5199719 5200451 NC_060939.1 CM039048.1 97.82 True indel: indel (> 5bp) 9477073 9478143 5200887 5201957 NC_060939.1 CM039048.1 98.6 True indel: indel (> 5bp) 9478581 9479121 5202415 5202955 NC_060939.1 CM039048.1 97.97 True indel: indel (> 5bp) 9479137 9480123 5202956 5203942 NC_060939.1 CM039048.1 97.16 True relocation, inconsistency = 2227203 11707654 11708673 5204270 5205289 NC_060939.1 CM039048.1 97.45 True indel: indel (> 5bp) 11708680 11709207 5205290 5205817 NC_060939.1 CM039048.1 97.54 True indel: indel (> 5bp) 11709592 11710177 5206257 5206842 NC_060939.1 CM039048.1 97.44 True indel: indel (> 5bp) 11710178 11710736 5206863 5207421 NC_060939.1 CM039048.1 97.5 True relocation, inconsistency = -1179680 10532305 10535541 5208670 5211894 NC_060939.1 CM039048.1 96.89 True relocation, inconsistency = -1575801 8963616 8964291 5215770 5216445 NC_060939.1 CM039048.1 98.08 True relocation, inconsistency = 4658051 13623755 13624608 5217858 5218711 NC_060939.1 CM039048.1 98.13 True local misassembly 13625547 13626151 5219419 5220023 NC_060939.1 CM039048.1 97.52 True relocation, inconsistency = -925305 12701760 12706011 5220937 5225223 NC_060939.1 CM039048.1 95.13 True relocation, inconsistency = -3849948 8856064 8858862 5225224 5228077 NC_060939.1 CM039048.1 95.09 True relocation, inconsistency = -130925 8727938 8734479 5228078 5234694 NC_060939.1 CM039048.1 95.88 True relocation, inconsistency = -2358637 6376015 6380921 5234867 5239740 NC_060939.1 CM039048.1 95.86 True relocation, inconsistency = 7264776 13645821 13651213 5239864 5245282 NC_060939.1 CM039048.1 96.38 True relocation, inconsistency = -1205228 12446040 12449036 5245337 5248372 NC_060939.1 CM039048.1 96.44 True relocation, inconsistency = -2119768 10329269 10334254 5248373 5253393 NC_060939.1 CM039048.1 95.62 True relocation, inconsistency = -3537611 6796644 6797588 5253394 5254318 NC_060939.1 CM039048.1 96.09 True relocation, inconsistency = 2228071 9026006 9026577 5254665 5255236 NC_060939.1 CM039048.1 98.43 True indel: indel (<= 5bp) 9026578 9027514 5255242 5256178 NC_060939.1 CM039048.1 97.76 True local misassembly 9028791 9029317 5257591 5258117 NC_060939.1 CM039048.1 97.15 True relocation, inconsistency = -2755059 6274555 6275109 5258414 5258968 NC_060939.1 CM039048.1 96.51 True relocation, inconsistency = 5998657 12273767 12278160 5258969 5263437 NC_060939.1 CM039048.1 95.38 True relocation, inconsistency = -2593121 9685040 9688381 5263438 5266789 NC_060939.1 CM039048.1 95.19 True relocation, inconsistency = -2918054 6773458 6778425 5269920 5274923 NC_060939.1 CM039048.1 96.83 True relocation, inconsistency = 6630188 13408933 13413747 5275243 5280067 NC_060939.1 CM039048.1 97.11 True relocation, inconsistency = -7051191 6366193 6366726 5283704 5284237 NC_060939.1 CM039048.1 96.84 True relocation, inconsistency = 7042206 13408933 13413747 5284238 5289062 NC_060939.1 CM039048.1 97.11 True relocation, inconsistency = -7023454 6391241 6397944 5290010 5296709 NC_060939.1 CM039048.1 96.1 True relocation, inconsistency = 26918 6424863 6425857 5296710 5297728 NC_060939.1 CM039048.1 95.06 True relocation, inconsistency = 7324709 13750567 13754207 5297729 5301379 NC_060939.1 CM039048.1 97.21 True relocation, inconsistency = -5296003 8458237 8462250 5301412 5305456 NC_060939.1 CM039048.1 96.2 True relocation, inconsistency = -2071824 6390427 6398585 5305457 5313591 NC_060939.1 CM039048.1 96.0 True relocation, inconsistency = 5010832 11414057 11422067 5318231 5326251 NC_060939.1 CM039048.1 97.18 True relocation, inconsistency = -2450196 8972386 8976638 5326766 5331042 NC_060939.1 CM039048.1 95.25 True relocation, inconsistency = 1245476 10223047 10228024 5331975 5336986 NC_060939.1 CM039048.1 97.04 True relocation, inconsistency = -3860772 6367253 6369627 5336987 5339327 NC_060939.1 CM039048.1 95.67 True relocation, inconsistency = 2486832 8856620 8857975 5339488 5340843 NC_060939.1 CM039048.1 97.86 True indel: indel (> 5bp) 8858235 8858914 5341158 5341837 NC_060939.1 CM039048.1 98.1 True relocation, inconsistency = 537337 9396252 9403636 5341838 5349223 NC_060939.1 CM039048.1 96.91 True relocation, inconsistency = 3996546 13400183 13407342 5349224 5356419 NC_060939.1 CM039048.1 96.57 True relocation, inconsistency = -4646717 8760626 8761719 5356420 5357514 NC_060939.1 CM039048.1 95.06 True relocation, inconsistency = 2205881 10967601 10971153 5357515 5361117 NC_060939.1 CM039048.1 96.8 True relocation, inconsistency = 745575 11716729 11725086 5361118 5369465 NC_060939.1 CM039048.1 96.82 True relocation, inconsistency = -5333578 6391734 6395373 5369691 5373285 NC_060939.1 CM039048.1 95.67 True relocation, inconsistency = 3827669 10223043 10225513 5373286 5375750 NC_060939.1 CM039048.1 97.22 True relocation, inconsistency = -2825211 7400303 7406374 5375751 5381796 NC_060939.1 CM039048.1 95.48 True relocation, inconsistency = 1554568 8961446 8964662 5382300 5385553 NC_060939.1 CM039048.1 96.29 True relocation, inconsistency = -2589371 6376015 6379572 5386277 5389796 NC_060939.1 CM039048.1 96.11 True relocation, inconsistency = 7021557 13408933 13413687 5397600 5402364 NC_060939.1 CM039048.1 96.66 True fake: not a misassembly (possible transposable element) 9327067 9329813 5402634 5405365 NC_060939.1 CM039048.1 95.92 True fake: not a misassembly (possible transposable element) 13421475 13426900 5405761 5411177 NC_060939.1 CM039048.1 97.29 True relocation, inconsistency = -1057144 12369757 12373899 5411178 5415295 NC_060939.1 CM039048.1 96.75 True relocation, inconsistency = -432562 11942016 11943371 5415974 5417329 NC_060939.1 CM039048.1 98.23 True indel: indel (> 5bp) 11943681 11944331 5417599 5418249 NC_060939.1 CM039048.1 97.39 True indel: indel (> 5bp) 11944332 11945223 5418309 5419200 NC_060939.1 CM039048.1 98.09 True relocation, inconsistency = 1041996 12988120 12988972 5420101 5420953 NC_060939.1 CM039048.1 97.42 True indel: indel (> 5bp) 12989211 12990788 5421182 5422759 NC_060939.1 CM039048.1 96.89 True relocation, inconsistency = -3309290 9681545 9687144 5422806 5428455 NC_060939.1 CM039048.1 95.04 True fake: not a misassembly (possible transposable element) 7144804 7149720 5428677 5433554 NC_060939.1 CM039048.1 96.22 True fake: not a misassembly (possible transposable element) 9686807 9688009 5433555 5434747 NC_060939.1 CM039048.1 95.21 True relocation, inconsistency = -1047751 8640259 8647531 5434748 5441974 NC_060939.1 CM039048.1 96.39 True relocation, inconsistency = 3783620 12431152 12437388 5441975 5448227 NC_060939.1 CM039048.1 96.05 True relocation, inconsistency = -998658 11438883 11441001 5448380 5450463 NC_060939.1 CM039048.1 95.97 True relocation, inconsistency = -2790368 8650634 8656713 5450464 5456518 NC_060939.1 CM039048.1 96.74 True relocation, inconsistency = 862437 9519151 9519793 5456519 5457156 NC_060939.1 CM039048.1 96.59 True relocation, inconsistency = -2483547 7038190 7046700 5459100 5467552 NC_060939.1 CM039048.1 95.62 True relocation, inconsistency = 2798912 9845613 9848135 5467553 5470050 NC_060939.1 CM039048.1 96.25 True relocation, inconsistency = 1558724 11406860 11412006 5470051 5475187 NC_060939.1 CM039048.1 97.46 True relocation, inconsistency = -3143367 8268640 8275772 5475188 5482265 NC_060939.1 CM039048.1 96.87 True relocation, inconsistency = 1212468 9489252 9492664 5483277 5486687 NC_060939.1 CM039048.1 95.66 True local misassembly 9489258 9492664 5486839 5490249 NC_060939.1 CM039048.1 95.68 True fake: not a misassembly (possible transposable element) 9964971 9967391 5490431 5492826 NC_060939.1 CM039048.1 95.89 True fake: not a misassembly (possible transposable element) 9489252 9492437 5493203 5496355 NC_060939.1 CM039048.1 96.5 True relocation, inconsistency = 473914 9966352 9967292 5496356 5497296 NC_060939.1 CM039048.1 95.23 True relocation, inconsistency = -3338361 6629153 6634717 5497518 5503051 NC_060939.1 CM039048.1 95.85 True relocation, inconsistency = 2856197 9490915 9492437 5503052 5504548 NC_060939.1 CM039048.1 95.42 True relocation, inconsistency = 473914 9966753 9967292 5504950 5505489 NC_060939.1 CM039048.1 97.22 True relocation, inconsistency = -2370089 7597425 7599741 5505711 5508006 NC_060939.1 CM039048.1 96.76 True relocation, inconsistency = 733814 8333556 8338505 5508007 5513026 NC_060939.1 CM039048.1 95.58 True local misassembly 8335168 8335716 5513227 5513775 NC_060939.1 CM039048.1 97.27 True indel: indel (> 5bp) 8335717 8336499 5513806 5514588 NC_060939.1 CM039048.1 99.11 True local misassembly 8337202 8338310 5515291 5516399 NC_060939.1 CM039048.1 97.93 True local misassembly 8339265 8340052 5517399 5518186 NC_060939.1 CM039048.1 99.11 True relocation, inconsistency = 5568427 13909350 13917439 5519057 5527072 NC_060939.1 CM039048.1 96.31 True local misassembly 13917431 13918171 5529327 5530067 NC_060939.1 CM039048.1 99.46 True indel: indel (> 5bp) 13918592 13919637 5530474 5531519 NC_060939.1 CM039048.1 99.33 True indel: indel (> 5bp) 13919638 13920252 5531530 5532144 NC_060939.1 CM039048.1 98.86 True indel: indel (> 5bp) 13920253 13921147 5532154 5533048 NC_060939.1 CM039048.1 99.44 True indel: indel (> 5bp) 13921342 13921964 5533288 5533910 NC_060939.1 CM039048.1 99.52 True indel: indel (<= 5bp) 13921966 13922562 5533911 5534507 NC_060939.1 CM039048.1 99.16 True indel: indel (> 5bp) 13922573 13923374 5534508 5535309 NC_060939.1 CM039048.1 99.63 True indel: indel (> 5bp) 13923385 13924628 5535310 5536553 NC_060939.1 CM039048.1 99.44 True local misassembly 13924718 13925970 5540347 5541599 NC_060939.1 CM039048.1 99.12 True indel: indel (<= 5bp) 13925971 13927428 5541605 5543062 NC_060939.1 CM039048.1 99.31 True indel: indel (> 5bp) 13927689 13928789 5543313 5544413 NC_060939.1 CM039048.1 99.55 True indel: indel (> 5bp) 13928827 13929548 5544460 5545181 NC_060939.1 CM039048.1 99.03 True indel: indel (> 5bp) 13929896 13931566 5545519 5547189 NC_060939.1 CM039048.1 99.16 True indel: indel (> 5bp) 13931582 13933763 5547190 5549371 NC_060939.1 CM039048.1 99.08 True indel: indel (> 5bp) 13933764 13934479 5549382 5550097 NC_060939.1 CM039048.1 99.16 True indel: indel (> 5bp) 13934911 13936702 5550509 5552300 NC_060939.1 CM039048.1 99.44 True indel: indel (> 5bp) 13936753 13937562 5552301 5553110 NC_060939.1 CM039048.1 99.38 True indel: indel (> 5bp) 13937563 13938260 5553131 5553828 NC_060939.1 CM039048.1 99.43 True indel: indel (> 5bp) 13938445 13939381 5554023 5554959 NC_060939.1 CM039048.1 99.47 True indel: indel (> 5bp) 13939398 13939954 5554960 5555516 NC_060939.1 CM039048.1 98.92 True indel: indel (> 5bp) 13939955 13942454 5555532 5558031 NC_060939.1 CM039048.1 99.36 True local misassembly 13943066 13943899 5558633 5559466 NC_060939.1 CM039048.1 99.28 True indel: indel (<= 5bp) 13943905 13945003 5559467 5560565 NC_060939.1 CM039048.1 99.0 True indel: indel (> 5bp) 13945019 13946076 5560566 5561623 NC_060939.1 CM039048.1 99.72 True indel: indel (> 5bp) 13946330 13947319 5561897 5562886 NC_060939.1 CM039048.1 99.39 True indel: indel (> 5bp) 13947355 13950082 5562887 5565614 NC_060939.1 CM039048.1 99.41 True indel: indel (<= 5bp) 13950083 13952121 5565620 5567658 NC_060939.1 CM039048.1 99.46 True indel: indel (<= 5bp) 13952122 13954636 5567664 5570178 NC_060939.1 CM039048.1 99.2 True indel: indel (> 5bp) 13954637 13955318 5570199 5570880 NC_060939.1 CM039048.1 100.0 True indel: indel (<= 5bp) 13955324 13957916 5570881 5573473 NC_060939.1 CM039048.1 99.23 True indel: indel (<= 5bp) 13957922 13958876 5573474 5574428 NC_060939.1 CM039048.1 99.48 True indel: indel (> 5bp) 13958892 13959504 5574429 5575041 NC_060939.1 CM039048.1 99.35 True indel: indel (> 5bp) 13959696 13960455 5575168 5575927 NC_060939.1 CM039048.1 99.47 True local misassembly 13961619 13963924 5577046 5579351 NC_060939.1 CM039048.1 99.74 True indel: indel (<= 5bp) 13964423 13965215 5579845 5580637 NC_060939.1 CM039048.1 98.99 True indel: indel (> 5bp) 13965226 13965751 5580638 5581163 NC_060939.1 CM039048.1 99.24 True indel: indel (<= 5bp) 13965757 13968400 5581164 5583807 NC_060939.1 CM039048.1 99.43 True indel: indel (> 5bp) 13968459 13971542 5583856 5586939 NC_060939.1 CM039048.1 99.3 True local misassembly 13972226 13992388 5586940 5607103 NC_060939.1 CM039048.1 99.6 True translocation 11207900 11210725 5607124 5609954 NC_060937.1 CM039048.1 97.94 True translocation 13997627 14050151 5609955 5662444 NC_060939.1 CM039048.1 99.47 True local misassembly 14051515 14053260 5662445 5664191 NC_060939.1 CM039048.1 99.49 True indel: stretch of mismatches 14053314 14214856 5664245 5827536 NC_060939.1 CM039048.1 98.12 True translocation 9239063 9243665 5827537 5832369 NC_060938.1 CM039048.1 95.68 True translocation 14214840 14237869 5832370 5855403 NC_060939.1 CM039048.1 99.62 True fake: not a misassembly (possible transposable element) 9267830 9269178 5855404 5856752 NC_060938.1 CM039048.1 97.88 True fake: not a misassembly (possible transposable element) 14237561 14392533 5856970 6009486 NC_060939.1 CM039048.1 97.93 True local misassembly 14392523 14466601 6010158 6084118 NC_060939.1 CM039048.1 99.21 True indel: indel (> 5bp) 14466742 14678463 6084182 6290248 NC_060939.1 CM039048.1 96.26 True local misassembly 14678437 14721672 6295820 6338871 NC_060939.1 CM039048.1 99.3 True relocation, inconsistency = 14420 14736093 14948531 6338872 6551374 NC_060939.1 CM039048.1 99.58 True local misassembly 14953134 14957762 6551375 6556003 NC_060939.1 CM039048.1 99.92 True local misassembly 14957714 15232819 6559025 6834261 NC_060939.1 CM039048.1 99.77 True relocation, inconsistency = 11354 15244174 15442288 6834262 7034305 NC_060939.1 CM039048.1 98.39 True relocation, inconsistency = 152728 15595017 15642544 7034306 7081662 NC_060939.1 CM039048.1 98.78 True fake: not a misassembly (possible transposable element) 15490854 15495292 7081663 7086102 NC_060939.1 CM039048.1 97.79 True fake: not a misassembly (possible transposable element) 15647053 15651187 7086406 7090542 NC_060939.1 CM039048.1 96.52 True local misassembly 15651378 15655508 7090849 7094982 NC_060939.1 CM039048.1 96.59 True fake: not a misassembly (possible transposable element) 15504123 15508257 7095286 7099422 NC_060939.1 CM039048.1 96.62 True fake: not a misassembly (possible transposable element) 15660018 15664152 7099726 7103862 NC_060939.1 CM039048.1 96.55 True relocation, inconsistency = -151689 15512767 15516901 7104166 7108302 NC_060939.1 CM039048.1 96.47 True local misassembly 15517089 15521223 7108606 7112740 NC_060939.1 CM039048.1 96.57 True relocation, inconsistency = 151457 15672987 15677117 7113047 7117179 NC_060939.1 CM039048.1 96.57 True local misassembly 15677305 15681438 7117483 7121618 NC_060939.1 CM039048.1 96.57 True local misassembly 15681626 15685759 7121922 7126057 NC_060939.1 CM039048.1 96.25 True local misassembly 15685947 15686815 7126361 7127227 NC_060939.1 CM039048.1 96.57 True relocation, inconsistency = -80410 15606406 15673359 7127228 7194176 NC_060939.1 CM039048.1 99.75 True relocation, inconsistency = 18255 15691615 15710207 7194177 7212770 NC_060939.1 CM039048.1 97.72 True local misassembly 15711576 16003931 7212771 7505096 NC_060939.1 CM039048.1 99.73 True relocation, inconsistency = 30045 16033977 16498344 7505097 7969683 NC_060939.1 CM039048.1 99.21 True indel: stretch of mismatches 16498345 16530094 7969684 8001434 NC_060939.1 CM039048.1 98.09 True relocation, inconsistency = -20586 16509509 16528073 8001435 8020414 NC_060939.1 CM039048.1 97.33 True relocation, inconsistency = -85355 16442719 16680749 8020415 8258103 NC_060939.1 CM039048.1 99.05 True relocation, inconsistency = 15641 16696391 16700505 8258104 8262219 NC_060939.1 CM039048.1 97.28 True relocation, inconsistency = 971792 17672298 17672945 8262220 8262867 NC_060939.1 CM039048.1 96.86 True relocation, inconsistency = -987944 16685820 16686679 8263686 8264544 NC_060939.1 CM039048.1 97.3 True fake: not a misassembly (possible transposable element) 17426124 17430959 8264545 8269379 NC_060939.1 CM039048.1 98.76 True fake: not a misassembly (possible transposable element) 16685820 16686679 8270497 8271355 NC_060939.1 CM039048.1 97.92 True relocation, inconsistency = 739444 17426124 17430942 8271356 8276174 NC_060939.1 CM039048.1 99.09 True relocation, inconsistency = 122200 17553143 17560094 8276175 8283128 NC_060939.1 CM039048.1 99.08 True relocation, inconsistency = -27445 17538566 17545432 8289045 8295908 NC_060939.1 CM039048.1 99.29 True relocation, inconsistency = -7671 17538566 17540652 8296713 8298798 NC_060939.1 CM039048.1 99.13 True relocation, inconsistency = -836616 16704037 16708644 8298799 8303406 NC_060939.1 CM039048.1 98.78 True relocation, scaffold gap is present, inconsistency = -58810 16704001 16706548 8357573 8360120 NC_060939.1 CM039048.1 98.27 True fake: not a misassembly (possible transposable element) 16719580 16722580 8361554 8364554 NC_060939.1 CM039048.1 97.97 True fake: not a misassembly (possible transposable element) 16713535 16718826 8366082 8371372 NC_060939.1 CM039048.1 98.68 True local misassembly 16713535 16718826 8372900 8378190 NC_060939.1 CM039048.1 98.7 True local misassembly 16713535 16718826 8379718 8385008 NC_060939.1 CM039048.1 98.72 True relocation, inconsistency = -19096 16704001 16706548 8389279 8391826 NC_060939.1 CM039048.1 98.23 True local misassembly 16704037 16706548 8391871 8394382 NC_060939.1 CM039048.1 98.37 True relocation, inconsistency = -9374 16704001 16706548 8401209 8403756 NC_060939.1 CM039048.1 98.31 True relocation, inconsistency = 835941 17553228 17560094 8414495 8421358 NC_060939.1 CM039048.1 99.17 True relocation, inconsistency = -844795 16715598 16718826 8421657 8424884 NC_060939.1 CM039048.1 98.17 True relocation, inconsistency = 674541 17447737 17451645 8479254 8483162 NC_060939.1 CM039048.1 99.18 True local misassembly 17447737 17451645 8485727 8489635 NC_060939.1 CM039048.1 99.18 True relocation, inconsistency = 15001 17473303 17482321 8496292 8505314 NC_060939.1 CM039048.1 99.19 True relocation, inconsistency = -31356 17450966 17451645 8505315 8505994 NC_060939.1 CM039048.1 99.16 True relocation, inconsistency = -741335 16721021 16722580 8516705 8518264 NC_060939.1 CM039048.1 98.08 True relocation, inconsistency = -23190 16704989 16706548 8523863 8525422 NC_060939.1 CM039048.1 98.14 True relocation, inconsistency = -17043 16704037 16706548 8539954 8542465 NC_060939.1 CM039048.1 98.17 True local misassembly 16704037 16706548 8543190 8545701 NC_060939.1 CM039048.1 98.17 True local misassembly 16704037 16706548 8546426 8548937 NC_060939.1 CM039048.1 98.13 True local misassembly 16704037 16706548 8549662 8552173 NC_060939.1 CM039048.1 98.13 True local misassembly 16704037 16706548 8552898 8555409 NC_060939.1 CM039048.1 98.13 True local misassembly 16712052 16714783 8562951 8565682 NC_060939.1 CM039048.1 99.23 True relocation, inconsistency = 936166 17653804 17659673 8568537 8574406 NC_060939.1 CM039048.1 98.16 True relocation, inconsistency = -973475 16705877 16708335 8594085 8596543 NC_060939.1 CM039048.1 98.95 True relocation, inconsistency = 83092 16791428 16797285 8596544 8602426 NC_060939.1 CM039048.1 99.07 True local misassembly 16794071 16795867 8602427 8604244 NC_060939.1 CM039048.1 98.43 True relocation, inconsistency = 389793 17185661 17192188 8604245 8610780 NC_060939.1 CM039048.1 99.04 True relocation, inconsistency = -399995 16792194 16797167 8610781 8615779 NC_060939.1 CM039048.1 98.88 True local misassembly 16793615 16798424 8615780 8620618 NC_060939.1 CM039048.1 98.42 True relocation, inconsistency = 374452 17172877 17180439 8620619 8628192 NC_060939.1 CM039048.1 99.1 True relocation, inconsistency = 7670 17188110 17192188 8628193 8632279 NC_060939.1 CM039048.1 99.01 True relocation, inconsistency = -475242 16716947 16718826 8632280 8634162 NC_060939.1 CM039048.1 98.53 True relocation, inconsistency = 702139 17423458 17427890 8636655 8641087 NC_060939.1 CM039048.1 99.07 True relocation, inconsistency = 234704 17662595 17670410 8641088 8648909 NC_060939.1 CM039048.1 98.01 True relocation, inconsistency = -953541 16719935 16724556 8651975 8656596 NC_060939.1 CM039048.1 99.07 True relocation, inconsistency = 65183 16790772 16797338 8657629 8664215 NC_060939.1 CM039048.1 98.95 True local misassembly 16792247 16793984 8664216 8665953 NC_060939.1 CM039048.1 98.99 True local misassembly 16791428 16797338 8665954 8671882 NC_060939.1 CM039048.1 99.02 True relocation, inconsistency = 815597 17612936 17614673 8671883 8673620 NC_060939.1 CM039048.1 98.82 True relocation, inconsistency = -823246 16791428 16797338 8673621 8679552 NC_060939.1 CM039048.1 99.16 True local misassembly 16794804 16796519 8679553 8681289 NC_060939.1 CM039048.1 99.14 True local misassembly 16791428 16797338 8681290 8687220 NC_060939.1 CM039048.1 99.09 True local misassembly 16792247 16797285 8687221 8692279 NC_060939.1 CM039048.1 99.23 True relocation, inconsistency = -7647 16791428 16797338 8694069 8699999 NC_060939.1 CM039048.1 99.16 True local misassembly 16794804 16796519 8700000 8701736 NC_060939.1 CM039048.1 99.14 True local misassembly 16791428 16797338 8701737 8707667 NC_060939.1 CM039048.1 99.16 True local misassembly 16792247 16796519 8707668 8711960 NC_060939.1 CM039048.1 99.07 True local misassembly 16791428 16797338 8711961 8717891 NC_060939.1 CM039048.1 99.12 True local misassembly 16792247 16797285 8717892 8722950 NC_060939.1 CM039048.1 99.2 True relocation, inconsistency = -93976 16706065 16708631 8725706 8728272 NC_060939.1 CM039048.1 99.49 True relocation, inconsistency = 82412 16791428 16795273 8728657 8732501 NC_060939.1 CM039048.1 99.54 True relocation, inconsistency = 620586 17415860 17420324 8732502 8736962 NC_060939.1 CM039048.1 98.88 True local misassembly 17415895 17420289 8736963 8741353 NC_060939.1 CM039048.1 98.97 True local misassembly 17415860 17420324 8741354 8745817 NC_060939.1 CM039048.1 99.01 True local misassembly 17415895 17420324 8745818 8750246 NC_060939.1 CM039048.1 98.99 True local misassembly 17416575 17420324 8750247 8753996 NC_060939.1 CM039048.1 99.08 True relocation, inconsistency = -708954 16712016 16714783 8754642 8757409 NC_060939.1 CM039048.1 99.17 True local misassembly 16712016 16714783 8759071 8761838 NC_060939.1 CM039048.1 99.17 True relocation, inconsistency = 700095 17415860 17420324 8762820 8767283 NC_060939.1 CM039048.1 99.01 True relocation, inconsistency = -715093 16705877 16708432 8767929 8770484 NC_060939.1 CM039048.1 99.13 True relocation, inconsistency = 707427 17415860 17420289 8770485 8774913 NC_060939.1 CM039048.1 98.99 True relocation, inconsistency = -628765 16791525 16797285 8774914 8780695 NC_060939.1 CM039048.1 99.1 True relocation, inconsistency = 619243 17416529 17420289 8780696 8784455 NC_060939.1 CM039048.1 99.04 True local misassembly 17415860 17420324 8784456 8788919 NC_060939.1 CM039048.1 98.99 True local misassembly 17415895 17420289 8788920 8793313 NC_060939.1 CM039048.1 98.99 True local misassembly 17415860 17420324 8793314 8797777 NC_060939.1 CM039048.1 99.01 True local misassembly 17416575 17420289 8797778 8801492 NC_060939.1 CM039048.1 99.08 True relocation, inconsistency = -628765 16791525 16797285 8801493 8807274 NC_060939.1 CM039048.1 99.07 True relocation, inconsistency = -91420 16705877 16708468 8807286 8809877 NC_060939.1 CM039048.1 99.21 True relocation, inconsistency = 707427 17415896 17420289 8809878 8814270 NC_060939.1 CM039048.1 99.07 True local misassembly 17415860 17420324 8814271 8818734 NC_060939.1 CM039048.1 99.01 True relocation, inconsistency = -716969 16704001 16707103 8819380 8822483 NC_060939.1 CM039048.1 98.42 True local misassembly 16704001 16707103 8823129 8826232 NC_060939.1 CM039048.1 98.39 True relocation, inconsistency = 83776 16791428 16797338 8826781 8832711 NC_060939.1 CM039048.1 99.14 True local misassembly 16792247 16796519 8832712 8837004 NC_060939.1 CM039048.1 99.07 True local misassembly 16791428 16797338 8837005 8842935 NC_060939.1 CM039048.1 99.16 True local misassembly 16794804 16796519 8842936 8844672 NC_060939.1 CM039048.1 99.12 True local misassembly 16791428 16797338 8844673 8850603 NC_060939.1 CM039048.1 99.09 True local misassembly 16794804 16796519 8850604 8852340 NC_060939.1 CM039048.1 99.17 True local misassembly 16791428 16797338 8852341 8858271 NC_060939.1 CM039048.1 99.12 True local misassembly 16792247 16796519 8858272 8862564 NC_060939.1 CM039048.1 99.14 True local misassembly 16791428 16797338 8862565 8868495 NC_060939.1 CM039048.1 99.19 True local misassembly 16794804 16796519 8868496 8870232 NC_060939.1 CM039048.1 99.11 True local misassembly 16791428 16797338 8870233 8876163 NC_060939.1 CM039048.1 99.09 True local misassembly 16792247 16796519 8876164 8880456 NC_060939.1 CM039048.1 99.17 True local misassembly 16791428 16797338 8880457 8886387 NC_060939.1 CM039048.1 99.19 True local misassembly 16794804 16796519 8886388 8888124 NC_060939.1 CM039048.1 99.22 True local misassembly 16791428 16797338 8888125 8894055 NC_060939.1 CM039048.1 99.17 True local misassembly 16792247 16796519 8894056 8898348 NC_060939.1 CM039048.1 99.12 True local misassembly 16791428 16797199 8898349 8904140 NC_060939.1 CM039048.1 99.23 True local misassembly 16791428 16797338 8904141 8910071 NC_060939.1 CM039048.1 99.14 True relocation, inconsistency = 622480 17419819 17420323 8910072 8910576 NC_060939.1 CM039048.1 99.21 True relocation, inconsistency = 78746 17500840 17507899 8912347 8919410 NC_060939.1 CM039048.1 99.24 True relocation, inconsistency = -733927 16773973 16787783 8919411 8933219 NC_060939.1 CM039048.1 98.82 True local misassembly 16788464 16793401 8933220 8938177 NC_060939.1 CM039048.1 98.8 True relocation, inconsistency = 821369 17614771 17634801 8938178 8958206 NC_060939.1 CM039048.1 99.02 True relocation, inconsistency = -34602 17600200 17623794 8958207 8981799 NC_060939.1 CM039048.1 99.0 True relocation, inconsistency = -14146 17609649 17621337 8981800 8993487 NC_060939.1 CM039048.1 98.85 True relocation, inconsistency = -13466 17607872 17637609 8993488 9023225 NC_060939.1 CM039048.1 99.02 True relocation, inconsistency = -23013 17614771 17637609 9023400 9046238 NC_060939.1 CM039048.1 99.12 True relocation, inconsistency = -12784 17624826 17637609 9046239 9059023 NC_060939.1 CM039048.1 99.04 True relocation, inconsistency = -20456 17617255 17624825 9059125 9066693 NC_060939.1 CM039048.1 99.04 True fake: not a misassembly (possible transposable element) 16697275 16699664 9066959 9069351 NC_060939.1 CM039048.1 97.38 True fake: not a misassembly (possible transposable element) 17627484 17635898 9069352 9077766 NC_060939.1 CM039048.1 98.75 True fake: not a misassembly (possible transposable element) 16712688 16713825 9077767 9078904 NC_060939.1 CM039048.1 98.8 True fake: not a misassembly (possible transposable element) 17635161 17638366 9078905 9082110 NC_060939.1 CM039048.1 99.17 True relocation, inconsistency = -846939 16791428 16797338 9082111 9088042 NC_060939.1 CM039048.1 98.84 True relocation, inconsistency = 826506 17628054 17635049 9092252 9099247 NC_060939.1 CM039048.1 98.84 True relocation, inconsistency = -7670 17628054 17629008 9099922 9100876 NC_060939.1 CM039048.1 98.99 True local misassembly 17623895 17636564 9100877 9113546 NC_060939.1 CM039048.1 98.92 True relocation, inconsistency = -167038 17469527 17473799 9113547 9117819 NC_060939.1 CM039048.1 99.45 True relocation, inconsistency = 154254 17628054 17636564 9117820 9126331 NC_060939.1 CM039048.1 99.01 True relocation, inconsistency = 33746 17670425 17677825 9126446 9134015 NC_060939.1 CM039048.1 95.81 True local misassembly 17681058 17682843 9134016 9135803 NC_060939.1 CM039048.1 98.08 True relocation, inconsistency = -928518 16754326 16760725 9135804 9142203 NC_060939.1 CM039048.1 98.92 True relocation, inconsistency = -24005 16737280 16744391 9142763 9149874 NC_060939.1 CM039048.1 98.83 True relocation, inconsistency = 477895 17222664 17227225 9150252 9154813 NC_060939.1 CM039048.1 98.84 True relocation, inconsistency = 400828 17628054 17635317 9154814 9162078 NC_060939.1 CM039048.1 98.95 True local misassembly 17628328 17636564 9162079 9170315 NC_060939.1 CM039048.1 98.93 True relocation, inconsistency = 41925 17678490 17679707 9170316 9171534 NC_060939.1 CM039048.1 98.04 True local misassembly 17677154 17682940 9171535 9177328 NC_060939.1 CM039048.1 98.11 True relocation, inconsistency = -259410 17423531 17431193 9177329 9184991 NC_060939.1 CM039048.1 99.27 True relocation, inconsistency = -693793 16737401 16744391 9184992 9191982 NC_060939.1 CM039048.1 98.79 True relocation, inconsistency = 735377 17479769 17484878 9191983 9197096 NC_060939.1 CM039048.1 98.67 True relocation, inconsistency = -720420 16764503 16768900 9197141 9201538 NC_060939.1 CM039048.1 98.78 True relocation, inconsistency = 842633 17611534 17623794 9201539 9213798 NC_060939.1 CM039048.1 98.82 True relocation, inconsistency = 36989 17660883 17663439 9213898 9216454 NC_060939.1 CM039048.1 98.19 True relocation, inconsistency = -11422 17652018 17661384 9216455 9225821 NC_060939.1 CM039048.1 98.08 True relocation, inconsistency = -176585 17484800 17491021 9225822 9232044 NC_060939.1 CM039048.1 99.13 True relocation, inconsistency = -773041 16717981 16719179 9232045 9233243 NC_060939.1 CM039048.1 98.62 True local misassembly 16714746 16724457 9233244 9242954 NC_060939.1 CM039048.1 98.66 True relocation, inconsistency = -16204 16708607 16714714 9243308 9249416 NC_060939.1 CM039048.1 98.61 True relocation, inconsistency = 929687 17644402 17646879 9249417 9251894 NC_060939.1 CM039048.1 98.65 True local misassembly 17647560 17650234 9251895 9254569 NC_060939.1 CM039048.1 98.31 True relocation, inconsistency = 8864 17659099 17669228 9254570 9264706 NC_060939.1 CM039048.1 97.68 True relocation, inconsistency = -26076 17643153 17656114 9264707 9277669 NC_060939.1 CM039048.1 98.43 True relocation, inconsistency = -936329 16719786 16724457 9277670 9282341 NC_060939.1 CM039048.1 98.56 True relocation, inconsistency = 923709 17648167 17649371 9282342 9283546 NC_060939.1 CM039048.1 98.73 True relocation, inconsistency = -875399 16773973 16787783 9283547 9297356 NC_060939.1 CM039048.1 98.61 True relocation, inconsistency = -34566 16753218 16754513 9297357 9298652 NC_060939.1 CM039048.1 98.65 True local misassembly 16748883 16761930 9298653 9311699 NC_060939.1 CM039048.1 98.72 True relocation, inconsistency = 12042 16773973 16779603 9311700 9317329 NC_060939.1 CM039048.1 98.68 True local misassembly 16773973 16788463 9317330 9331817 NC_060939.1 CM039048.1 98.58 True relocation, inconsistency = 747711 17536175 17542319 9331818 9337962 NC_060939.1 CM039048.1 98.79 True relocation, inconsistency = 125283 17667960 17669652 9338320 9340013 NC_060939.1 CM039048.1 97.55 True local misassembly 17672210 17681816 9340014 9349787 NC_060939.1 CM039048.1 96.29 True relocation, inconsistency = -7666 17674151 17680379 9349788 9356181 NC_060939.1 CM039048.1 95.91 True relocation, inconsistency = -16360 17664020 17667652 9356182 9359817 NC_060939.1 CM039048.1 98.47 True indel: indel (<= 5bp) 17667960 17669652 9360127 9361820 NC_060939.1 CM039048.1 97.48 True local misassembly 17672210 17681816 9361821 9371594 NC_060939.1 CM039048.1 96.24 True relocation, inconsistency = -7666 17674151 17679890 9371595 9377496 NC_060939.1 CM039048.1 95.91 True relocation, inconsistency = -70051 17609840 17617988 9377497 9385641 NC_060939.1 CM039048.1 98.39 True relocation, inconsistency = 53522 17671511 17681057 9385642 9395357 NC_060939.1 CM039048.1 95.96 True local misassembly 17674756 17680248 9395358 9401010 NC_060939.1 CM039048.1 95.58 True local misassembly 17685866 17720780 9401011 9435917 NC_060939.1 CM039048.1 99.74 True local misassembly 17722754 18287943 9435918 10001208 NC_060939.1 CM039048.1 99.87 True relocation, inconsistency = 958327 19246271 19252806 10007744 10001209 NC_060939.1 CM039048.1 99.78 True indel: indel (<= 5bp) 19243639 19246270 10010379 10007748 NC_060939.1 CM039048.1 99.81 True indel: indel (> 5bp) 19242649 19243638 10011387 10010398 NC_060939.1 CM039048.1 99.6 True indel: indel (> 5bp) 19241687 19242636 10012337 10011388 NC_060939.1 CM039048.1 99.68 True indel: indel (<= 5bp) 19239679 19241299 10014349 10012729 NC_060939.1 CM039048.1 99.51 True indel: indel (<= 5bp) 19236012 19239677 10018015 10014350 NC_060939.1 CM039048.1 99.78 True indel: indel (<= 5bp) 19233638 19236009 10020387 10018016 NC_060939.1 CM039048.1 99.62 True indel: indel (<= 5bp) 19232914 19233634 10021108 10020388 NC_060939.1 CM039048.1 99.86 True indel: indel (<= 5bp) 19232405 19232910 10021614 10021109 NC_060939.1 CM039048.1 100.0 True indel: indel (<= 5bp) 19230792 19232401 10023224 10021615 NC_060939.1 CM039048.1 99.75 True local misassembly 19229388 19230108 10024630 10023910 NC_060939.1 CM039048.1 99.86 True indel: indel (<= 5bp) 19225805 19229387 10028214 10024632 NC_060939.1 CM039048.1 99.69 True indel: indel (<= 5bp) 19222734 19225799 10031280 10028215 NC_060939.1 CM039048.1 99.48 True indel: indel (> 5bp) 19221861 19222724 10032144 10031281 NC_060939.1 CM039048.1 99.88 True indel: indel (<= 5bp) 19212430 19221856 10041571 10032145 NC_060939.1 CM039048.1 99.78 True indel: indel (<= 5bp) 19211015 19212429 10042991 10041577 NC_060939.1 CM039048.1 99.79 True indel: stretch of mismatches 19206877 19210686 10047129 10043320 NC_060939.1 CM039048.1 99.84 True indel: indel (<= 5bp) 19206077 19206872 10047925 10047130 NC_060939.1 CM039048.1 100.0 True indel: indel (> 5bp) 19200586 19206063 10053403 10047926 NC_060939.1 CM039048.1 99.93 True indel: indel (<= 5bp) 19194749 19200514 10059235 10053470 NC_060939.1 CM039048.1 99.88 True indel: indel (<= 5bp) 19190672 19194747 10063311 10059236 NC_060939.1 CM039048.1 99.75 True indel: indel (<= 5bp) 19188625 19190671 10065360 10063314 NC_060939.1 CM039048.1 99.85 True indel: indel (<= 5bp) 19187797 19188624 10066193 10065366 NC_060939.1 CM039048.1 99.4 True indel: indel (<= 5bp) 19186866 19187794 10067122 10066194 NC_060939.1 CM039048.1 99.68 True indel: stretch of mismatches 19185819 19186695 10068169 10067293 NC_060939.1 CM039048.1 99.66 True indel: indel (<= 5bp) 19184995 19185818 10068994 10068171 NC_060939.1 CM039048.1 99.88 True indel: indel (<= 5bp) 19184200 19184993 10069788 10068995 NC_060939.1 CM039048.1 99.5 True indel: indel (<= 5bp) 19181284 19184199 10072705 10069790 NC_060939.1 CM039048.1 99.73 True local misassembly 19179009 19180524 10074702 10073187 NC_060939.1 CM039048.1 99.8 True indel: indel (<= 5bp) 19178241 19179005 10075467 10074703 NC_060939.1 CM039048.1 99.48 True indel: indel (> 5bp) 19177142 19178157 10076631 10075616 NC_060939.1 CM039048.1 99.41 True indel: indel (<= 5bp) 19172453 19177140 10081319 10076632 NC_060939.1 CM039048.1 99.77 True indel: indel (<= 5bp) 19170214 19172166 10083555 10081603 NC_060939.1 CM039048.1 99.74 True indel: indel (> 5bp) 19167614 19170206 10086148 10083556 NC_060939.1 CM039048.1 99.77 True indel: indel (<= 5bp) 19163115 19167612 10090646 10086149 NC_060939.1 CM039048.1 99.64 True indel: indel (> 5bp) 19162043 19162733 10091707 10091017 NC_060939.1 CM039048.1 99.86 True indel: indel (<= 5bp) 19160394 19162041 10093355 10091708 NC_060939.1 CM039048.1 99.88 True indel: indel (<= 5bp) 19157069 19160213 10096682 10093538 NC_060939.1 CM039048.1 99.81 True indel: indel (> 5bp) 19155241 19157032 10098532 10096741 NC_060939.1 CM039048.1 99.61 True indel: indel (<= 5bp) 19154561 19155239 10099211 10098533 NC_060939.1 CM039048.1 99.85 True indel: stretch of mismatches 19153004 19154066 10100768 10099706 NC_060939.1 CM039048.1 99.81 True indel: indel (<= 5bp) 19150441 19153003 10103332 10100770 NC_060939.1 CM039048.1 99.73 True local misassembly 19149128 19149833 10104643 10103938 NC_060939.1 CM039048.1 100.0 True indel: indel (<= 5bp) 19147148 19149127 10106624 10104645 NC_060939.1 CM039048.1 99.49 True indel: indel (<= 5bp) 19129711 19147146 10124060 10106625 NC_060939.1 CM039048.1 99.99 True indel: indel (<= 5bp) 19121817 19129710 10131956 10124063 NC_060939.1 CM039048.1 100.0 True indel: indel (<= 5bp) 19113195 19121816 10140579 10131958 NC_060939.1 CM039048.1 99.99 True indel: indel (<= 5bp) 19103548 19113192 10150224 10140580 NC_060939.1 CM039048.1 99.98 True indel: indel (<= 5bp) 19098431 19103546 10155340 10150225 NC_060939.1 CM039048.1 99.96 True indel: indel (> 5bp) 19097356 19098430 10156423 10155349 NC_060939.1 CM039048.1 99.81 True indel: indel (<= 5bp) 19085305 19097354 10168473 10156424 NC_060939.1 CM039048.1 99.97 True indel: indel (> 5bp) 19079622 19085233 10174166 10168555 NC_060939.1 CM039048.1 99.95 True indel: indel (> 5bp) 19071781 19079621 10182046 10174206 NC_060939.1 CM039048.1 99.78 True indel: indel (> 5bp) 19069915 19071720 10183925 10182120 NC_060939.1 CM039048.1 99.89 True indel: indel (<= 5bp) 19068554 19069913 10185285 10183926 NC_060939.1 CM039048.1 99.71 True indel: indel (<= 5bp) 19067156 19068553 10186685 10185288 NC_060939.1 CM039048.1 99.79 True indel: indel (<= 5bp) 19060258 19067155 10193584 10186687 NC_060939.1 CM039048.1 99.88 True indel: indel (<= 5bp) 19048447 19060257 10205396 10193586 NC_060939.1 CM039048.1 99.87 True indel: indel (> 5bp) 19043973 19048417 10209841 10205397 NC_060939.1 CM039048.1 99.57 True indel: indel (<= 5bp) 19040530 19043972 10213285 10209843 NC_060939.1 CM039048.1 99.1 True indel: indel (> 5bp) 19039238 19040505 10214553 10213286 NC_060939.1 CM039048.1 99.53 True indel: indel (<= 5bp) 19036942 19038949 10216846 10214839 NC_060939.1 CM039048.1 99.8 True indel: indel (> 5bp) 19034673 19036927 10219140 10216886 NC_060939.1 CM039048.1 99.65 True indel: indel (> 5bp) 19031383 19034672 10222436 10219147 NC_060939.1 CM039048.1 99.45 True indel: indel (<= 5bp) 19030626 19031382 10223194 10222438 NC_060939.1 CM039048.1 99.74 True indel: indel (<= 5bp) 19027984 19030625 10225837 10223196 NC_060939.1 CM039048.1 99.58 True local misassembly 19026160 19026889 10227657 10226928 NC_060939.1 CM039048.1 99.18 True indel: indel (<= 5bp) 19024246 19026085 10229576 10227737 NC_060939.1 CM039048.1 99.02 True indel: stretch of mismatches 19019695 19023787 10234127 10230035 NC_060939.1 CM039048.1 99.17 True indel: indel (> 5bp) 19016912 19019665 10236919 10234166 NC_060939.1 CM039048.1 99.64 True local misassembly 19013753 19016030 10240081 10237804 NC_060939.1 CM039048.1 99.3 True indel: indel (<= 5bp) 19013121 19013751 10240712 10240082 NC_060939.1 CM039048.1 98.73 True local misassembly 19011475 19012616 10242356 10241215 NC_060939.1 CM039048.1 99.3 True indel: indel (<= 5bp) 19010381 19011150 10243449 10242680 NC_060939.1 CM039048.1 99.74 True indel: stretch of mismatches 19008291 19009880 10245539 10243950 NC_060939.1 CM039048.1 99.62 True indel: indel (<= 5bp) 19007593 19008290 10246238 10245541 NC_060939.1 CM039048.1 99.57 True indel: indel (<= 5bp) 19006923 19007592 10246912 10246243 NC_060939.1 CM039048.1 99.55 True indel: indel (> 5bp) 19001387 19006922 10252455 10246920 NC_060939.1 CM039048.1 99.71 True relocation, inconsistency = 10683 18983793 18990351 10259366 10252808 NC_060939.1 CM039048.1 99.8 True indel: indel (<= 5bp) 18982962 18983792 10260199 10259369 NC_060939.1 CM039048.1 99.88 True indel: indel (> 5bp) 18972344 18982961 10270843 10260226 NC_060939.1 CM039048.1 99.64 True indel: indel (<= 5bp) 18970388 18972343 10272800 10270845 NC_060939.1 CM039048.1 99.74 True indel: indel (<= 5bp) 18968094 18970387 10275098 10272805 NC_060939.1 CM039048.1 99.48 True indel: indel (<= 5bp) 18965687 18968093 10277509 10275103 NC_060939.1 CM039048.1 99.67 True indel: indel (<= 5bp) 18961780 18965524 10281418 10277674 NC_060939.1 CM039048.1 99.6 True relocation, inconsistency = 7314 18952352 18953901 10283532 10281983 NC_060939.1 CM039048.1 99.94 True indel: indel (<= 5bp) 18951197 18952350 10284686 10283533 NC_060939.1 CM039048.1 99.39 True indel: indel (> 5bp) 18949921 18951056 10285956 10284821 NC_060939.1 CM039048.1 99.74 True indel: indel (<= 5bp) 18948790 18949916 10287083 10285957 NC_060939.1 CM039048.1 99.65 True indel: indel (<= 5bp) 18944472 18948788 10291400 10287084 NC_060939.1 CM039048.1 99.75 True indel: indel (<= 5bp) 18941956 18944471 10293917 10291402 NC_060939.1 CM039048.1 99.8 True indel: indel (> 5bp) 18940957 18941464 10294892 10294385 NC_060939.1 CM039048.1 100.0 True indel: indel (<= 5bp) 18939904 18940953 10295942 10294893 NC_060939.1 CM039048.1 99.81 True indel: indel (<= 5bp) 18936096 18939900 10299747 10295943 NC_060939.1 CM039048.1 99.71 True indel: indel (<= 5bp) 18930533 18936095 10305311 10299749 NC_060939.1 CM039048.1 99.75 True indel: indel (<= 5bp) 18928687 18930532 10307158 10305313 NC_060939.1 CM039048.1 99.67 True indel: indel (<= 5bp) 18927837 18928686 10308009 10307160 NC_060939.1 CM039048.1 99.76 True indel: indel (<= 5bp) 18926265 18927835 10309580 10308010 NC_060939.1 CM039048.1 99.62 True indel: indel (<= 5bp) 18925482 18926261 10310360 10309581 NC_060939.1 CM039048.1 99.74 True indel: indel (<= 5bp) 18923480 18925481 10312363 10310362 NC_060939.1 CM039048.1 99.65 True indel: indel (<= 5bp) 18921836 18923479 10314009 10312366 NC_060939.1 CM039048.1 99.57 True indel: indel (<= 5bp) 18920486 18921835 10315360 10314011 NC_060939.1 CM039048.1 99.7 True indel: indel (> 5bp) 18918489 18920324 10317364 10315529 NC_060939.1 CM039048.1 99.67 True indel: indel (<= 5bp) 18914609 18918488 10321247 10317368 NC_060939.1 CM039048.1 99.7 True relocation, inconsistency = 749703 19668192 20716727 10321248 11370686 NC_060939.1 CM039048.1 99.59 True local misassembly 20717182 21063372 11370687 11710509 NC_060939.1 CM039048.1 96.67 True indel: indel (> 5bp) 21063415 21975153 11710510 12622035 NC_060939.1 CM039048.1 99.68 True indel: indel (> 5bp) 21975268 21981596 12622158 12628480 NC_060939.1 CM039048.1 97.0 True indel: stretch of mismatches 21981644 22288252 12628528 12935279 NC_060939.1 CM039048.1 99.27 True indel: indel (> 5bp) 22288335 22608318 12935356 13255395 NC_060939.1 CM039048.1 99.7 True local misassembly 22610060 23676178 13255396 14318517 NC_060939.1 CM039048.1 99.47 True indel: indel (> 5bp) 23676275 27171909 14318601 17814485 NC_060939.1 CM039048.1 99.74 True local misassembly 27175635 27740786 17814486 18373406 NC_060939.1 CM039048.1 98.43 True local misassembly 27741813 27870562 18375576 18504284 NC_060939.1 CM039048.1 99.7 True relocation, scaffold gap is present, inconsistency = 2069891 29998837 30197787 18761244 18562668 NC_060939.1 CM039048.1 99.46 True indel: indel (> 5bp) 28612578 29998835 20146830 18761307 NC_060939.1 CM039048.1 99.76 True indel: indel (<= 5bp) 28106907 28612573 20652316 20146831 NC_060939.1 CM039048.1 99.65 True relocation, inconsistency = 1407096 30019670 31590811 20652317 22223333 NC_060939.1 CM039048.1 99.67 True indel: indel (> 5bp) 31590866 31781319 22223436 22413741 NC_060939.1 CM039048.1 99.68 True indel: indel (<= 5bp) 31781439 32257833 22413859 22890218 NC_060939.1 CM039048.1 99.52 True indel: indel (> 5bp) 32257941 33772906 22890314 24403310 NC_060939.1 CM039048.1 99.6 True indel: stretch of mismatches 33772930 40363558 24403334 30996727 NC_060939.1 CM039048.1 99.77 True local misassembly 40364287 43426906 30997202 34059728 NC_060939.1 CM039048.1 99.88 True indel: indel (> 5bp) 43426943 46888648 34059797 37524628 NC_060939.1 CM039048.1 99.82 True indel: indel (> 5bp) 46888665 47894261 37524661 38530143 NC_060939.1 CM039048.1 99.78 True local misassembly 47894243 50333112 38530421 40968466 NC_060939.1 CM039048.1 99.65 True local misassembly 50332256 55490610 40968508 46124352 NC_060939.1 CM039048.1 99.67 True indel: indel (> 5bp) 55490815 57099116 46124589 47733098 NC_060939.1 CM039048.1 99.71 True indel: indel (> 5bp) 57099204 57341139 47733175 47975909 NC_060939.1 CM039048.1 99.42 True local misassembly 57341557 57915495 47976203 48550254 NC_060939.1 CM039048.1 99.73 True indel: indel (> 5bp) 57915558 61981147 48550271 52611341 NC_060939.1 CM039048.1 99.67 True local misassembly 61983819 71478369 52611342 62104701 NC_060939.1 CM039048.1 99.85 True indel: indel (> 5bp) 71478466 74897448 62104752 65523934 NC_060939.1 CM039048.1 99.9 True local misassembly 74898255 74899000 65524688 65525455 NC_060939.1 CM039048.1 96.24 True local misassembly 74900279 74901571 65526687 65527934 NC_060939.1 CM039048.1 96.37 True fake: scaffold gap size wrong estimation (local) 74900940 77867532 65533317 68500602 NC_060939.1 CM039048.1 99.75 True local misassembly 77868374 80747223 68501276 71380315 NC_060939.1 CM039048.1 99.82 True local misassembly 80753275 82035230 71380316 72661024 NC_060939.1 CM039048.1 99.26 True inversion 82113897 82177771 72724801 72661025 NC_060939.1 CM039048.1 99.17 True inversion 82178167 86655538 72724802 77212296 NC_060939.1 CM039048.1 99.49 True indel: indel (> 5bp) 86655850 89905652 77212570 80462588 NC_060939.1 CM039048.1 99.67 True indel: indel (> 5bp) 89905918 90058505 80462843 80615439 NC_060939.1 CM039048.1 99.8 True indel: indel (<= 5bp) 90058605 90539891 80615535 81097047 NC_060939.1 CM039048.1 99.69 True indel: indel (> 5bp) 90539956 92006127 81097089 82564033 NC_060939.1 CM039048.1 99.59 True indel: indel (> 5bp) 92006480 92844569 82564322 83402333 NC_060939.1 CM039048.1 99.8 True indel: indel (> 5bp) 92844814 94200163 83402562 84757538 NC_060939.1 CM039048.1 99.81 True indel: indel (<= 5bp) 94200216 95421426 84757589 85979383 NC_060939.1 CM039048.1 99.71 True local misassembly 95423217 97572624 85980812 88128646 NC_060939.1 CM039048.1 99.57 True local misassembly 97572624 97825885 88128735 88389064 NC_060939.1 CM039048.1 96.98 True local misassembly 97828598 97909039 88389149 88469690 NC_060939.1 CM039048.1 99.48 True indel: indel (> 5bp) 97909101 98225486 88469713 88783558 NC_060939.1 CM039048.1 98.96 True indel: indel (> 5bp) 98225620 98464874 88783664 89028386 NC_060939.1 CM039048.1 97.45 True local misassembly 98465420 99694390 89028950 90273499 NC_060939.1 CM039048.1 97.74 True translocation 201043523 201101046 90274208 90331782 NC_060927.1 CM039048.1 99.06 True local misassembly 201104817 201105729 90335807 90336719 NC_060927.1 CM039048.1 100.0 True CONTIG CM039048.1 90339852 misassembled 150429455 150614552 190837 5741 NC_060933.1 CM039049.1 99.6 True translocation 214392 217388 190838 193842 NC_060942.1 CM039049.1 95.14 True local misassembly 221151 222400 197381 198630 NC_060942.1 CM039049.1 95.52 True indel: indel (<= 5bp) 222575 223093 198802 199320 NC_060942.1 CM039049.1 96.92 True indel: indel (> 5bp) 223317 223945 199592 200220 NC_060942.1 CM039049.1 96.82 True local misassembly 226092 226734 202355 202997 NC_060942.1 CM039049.1 97.2 True translocation 150412002 150412527 206313 205788 NC_060933.1 CM039049.1 97.15 True local misassembly 150406197 150407342 211817 210681 NC_060933.1 CM039049.1 95.29 True translocation 26095 230607 211818 416616 NC_060940.1 CM039049.1 99.27 True indel: indel (> 5bp) 230717 494234 416749 678800 NC_060940.1 CM039049.1 98.04 True indel: indel (> 5bp) 494315 750346 678867 934883 NC_060940.1 CM039049.1 98.34 True indel: indel (<= 5bp) 750436 771646 934972 956198 NC_060940.1 CM039049.1 99.66 True local misassembly 772350 853546 956678 1039569 NC_060940.1 CM039049.1 96.35 True local misassembly 853879 865483 1040694 1052503 NC_060940.1 CM039049.1 96.64 True local misassembly 867517 959976 1054096 1148751 NC_060940.1 CM039049.1 95.02 True indel: indel (> 5bp) 960014 1198296 1148753 1392829 NC_060940.1 CM039049.1 96.09 True local misassembly 1199762 1246363 1393885 1440514 NC_060940.1 CM039049.1 97.44 True indel: indel (> 5bp) 1246412 1274822 1440596 1468794 NC_060940.1 CM039049.1 97.33 True indel: indel (> 5bp) 1274849 1752266 1468860 1946622 NC_060940.1 CM039049.1 99.27 True local misassembly 1754083 2670275 1947219 2861007 NC_060940.1 CM039049.1 99.51 True local misassembly 2670672 3420213 2863360 3613584 NC_060940.1 CM039049.1 99.57 True local misassembly 3420529 4373185 3614089 4566885 NC_060940.1 CM039049.1 99.8 True local misassembly 4373381 8594934 4566886 8794034 NC_060940.1 CM039049.1 99.51 True local misassembly 8595087 10355626 8795912 10555160 NC_060940.1 CM039049.1 99.64 True local misassembly 10357102 10555196 10556525 10754282 NC_060940.1 CM039049.1 99.57 True local misassembly 10555112 11372170 10754342 11572205 NC_060940.1 CM039049.1 99.68 True local misassembly 11372371 14804966 11572554 15003754 NC_060940.1 CM039049.1 99.72 True relocation, inconsistency = 312473 15117440 15327183 15213203 15003755 NC_060940.1 CM039049.1 99.36 True fake: not a misassembly (possible transposable element) 15116749 15117425 15213308 15213984 NC_060940.1 CM039049.1 99.7 True fake: not a misassembly (possible transposable element) 14893156 15116748 15437556 15213986 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = 1227660 16344409 16363243 15437557 15456381 NC_060940.1 CM039049.1 99.06 True relocation, inconsistency = -1448698 14914546 15031458 15456382 15573364 NC_060940.1 CM039049.1 99.78 True inversion 14804967 14915578 15683941 15573365 NC_060940.1 CM039049.1 99.55 True relocation, inconsistency = 411605 15327184 16451798 15683942 16807968 NC_060940.1 CM039049.1 99.73 True indel: indel (> 5bp) 16451875 20122380 16808073 20478861 NC_060940.1 CM039049.1 99.76 True indel: indel (> 5bp) 20122477 21517867 20478930 21874912 NC_060940.1 CM039049.1 99.74 True relocation, inconsistency = 151749 21669617 22633819 22839271 21874913 NC_060940.1 CM039049.1 99.83 True relocation, scaffold gap is present, inconsistency = 334451 22968771 22977140 22839772 22848263 NC_060940.1 CM039049.1 98.4 True relocation, inconsistency = -343324 22633820 22959345 22848267 23173695 NC_060940.1 CM039049.1 99.51 True relocation, scaffold gap is present, inconsistency = -225154 22734205 22753145 23173709 23192649 NC_060940.1 CM039049.1 99.98 True indel: indel (> 5bp) 22753173 23494083 23192656 23933805 NC_060940.1 CM039049.1 99.64 True indel: indel (> 5bp) 23494230 26999210 23933912 27437517 NC_060940.1 CM039049.1 99.76 True indel: indel (> 5bp) 26999348 27090427 27437595 27529088 NC_060940.1 CM039049.1 98.35 True local misassembly 27090630 27415568 27529099 27854090 NC_060940.1 CM039049.1 99.74 True local misassembly 27417944 28752507 27855956 29190107 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 35594 28788102 28923836 29325806 29190108 NC_060940.1 CM039049.1 99.28 True indel: indel (> 5bp) 28784455 28788015 29329458 29325899 NC_060940.1 CM039049.1 99.66 True relocation, inconsistency = -12989 28788102 28797443 29338793 29329459 NC_060940.1 CM039049.1 99.28 True indel: indel (> 5bp) 28697172 28788015 29429778 29338886 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = 201975 28990022 29133030 29429810 29572898 NC_060940.1 CM039049.1 99.18 True indel: indel (> 5bp) 29133255 30509262 29573198 30947843 NC_060940.1 CM039049.1 99.64 True local misassembly 30509389 32679098 30947844 33118019 NC_060940.1 CM039049.1 99.81 True local misassembly 32679633 32680521 33118787 33119675 NC_060940.1 CM039049.1 98.99 True local misassembly 32683434 32684727 33122982 33124275 NC_060940.1 CM039049.1 99.92 True indel: indel (> 5bp) 32684737 32689747 33124276 33129286 NC_060940.1 CM039049.1 99.98 True local misassembly 32689748 32691074 33130375 33131701 NC_060940.1 CM039049.1 99.77 True indel: indel (> 5bp) 32691075 32692868 33131719 33133512 NC_060940.1 CM039049.1 100.0 True indel: indel (> 5bp) 32692869 32695318 33133522 33135971 NC_060940.1 CM039049.1 99.96 True indel: indel (> 5bp) 32695336 32696143 33135972 33136779 NC_060940.1 CM039049.1 100.0 True local misassembly 32702084 33657345 33140685 34095261 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = -70030 33587692 33653340 34095638 34161673 NC_060940.1 CM039049.1 98.08 True local misassembly 33656275 33668692 34166951 34185146 NC_060940.1 CM039049.1 96.64 True relocation, inconsistency = 1395474 35064167 35862673 34185147 34983218 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 25837 35889172 35890615 34983880 34985323 NC_060940.1 CM039049.1 98.06 True indel: indel (<= 5bp) 35890616 35891248 34985327 34985959 NC_060940.1 CM039049.1 97.31 True local misassembly 35891589 35893384 34985960 34987755 NC_060940.1 CM039049.1 99.0 True local misassembly 35895116 35912613 34988126 35005626 NC_060940.1 CM039049.1 99.38 True relocation, inconsistency = 31539 35944153 35957881 35005627 35019342 NC_060940.1 CM039049.1 98.89 True local misassembly 35954485 35955878 35019343 35020736 NC_060940.1 CM039049.1 98.79 True relocation, inconsistency = 105516 36061395 36078265 35020737 35037619 NC_060940.1 CM039049.1 98.95 True local misassembly 36081655 36095508 35037620 35051481 NC_060940.1 CM039049.1 98.97 True relocation, inconsistency = -15259 36080453 36095481 35051685 35066734 NC_060940.1 CM039049.1 98.96 True local misassembly 36101584 36109018 35066735 35074169 NC_060940.1 CM039049.1 98.95 True relocation, scaffold gap is present, inconsistency = 1039699 37148978 37149530 35074430 35074982 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = 93102 37242633 37251891 35074983 35084241 NC_060940.1 CM039049.1 99.71 True relocation, inconsistency = -57763 37195738 37196333 35085851 35086446 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = 94455 37290789 37296564 35086447 35092222 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -64555 37232010 37239137 35092223 35099350 NC_060940.1 CM039049.1 99.78 True local misassembly 37240837 37245933 35099351 35104447 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = -22086 37224800 37233040 35105400 35113641 NC_060940.1 CM039049.1 99.7 True local misassembly 37228028 37234739 35113726 35120437 NC_060940.1 CM039049.1 99.7 True local misassembly 37244322 37256293 35123224 35135195 NC_060940.1 CM039049.1 99.77 True relocation, inconsistency = -54365 37201929 37206525 35135196 35139794 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = 87321 37293847 37297459 35139795 35143407 NC_060940.1 CM039049.1 99.66 True local misassembly 37302557 37307517 35143408 35148368 NC_060940.1 CM039049.1 99.8 True relocation, inconsistency = -83583 37223935 37231503 35148369 35155938 NC_060940.1 CM039049.1 99.72 True relocation, inconsistency = -37375 37195738 37199286 35157548 35161096 NC_060940.1 CM039049.1 99.68 True relocation, inconsistency = 91397 37290684 37299664 35161097 35170073 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -61497 37238168 37243396 35170074 35175302 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -128101 37115462 37122069 35175469 35182076 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 103297 37225367 37228576 35182077 35185287 NC_060940.1 CM039049.1 99.72 True relocation, inconsistency = 86300 37314877 37323355 35185288 35193763 NC_060940.1 CM039049.1 99.6 True relocation, inconsistency = 277202 37600702 37604500 35193908 35197706 NC_060940.1 CM039049.1 99.34 True relocation, inconsistency = 156921 37762505 37766455 35198790 35202739 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = -165754 37600702 37610529 35202740 35212568 NC_060940.1 CM039049.1 99.38 True relocation, inconsistency = -152174 37458356 37459374 35212569 35213587 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = -36691 37422684 37428119 35213588 35219019 NC_060940.1 CM039049.1 99.16 True relocation, inconsistency = -54015 37374105 37382703 35219020 35227615 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = -9172 37374105 37379399 35228189 35233480 NC_060940.1 CM039049.1 99.61 True local misassembly 37372606 37383823 35233481 35244698 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 24463 37408287 37419055 35244699 35255473 NC_060940.1 CM039049.1 99.11 True relocation, inconsistency = 9853 37428909 37432478 35255474 35259044 NC_060940.1 CM039049.1 99.43 True relocation, inconsistency = -58431 37374105 37379223 35259102 35264217 NC_060940.1 CM039049.1 99.47 True relocation, inconsistency = 22424 37401648 37408375 35264218 35270945 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = -46207 37362848 37376751 35271625 35285527 NC_060940.1 CM039049.1 99.74 True fake: not a misassembly (possible transposable element) 37751075 37752164 35285528 35286617 NC_060940.1 CM039049.1 99.25 True fake: not a misassembly (possible transposable element) 37374105 37379223 35286618 35291732 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = 22424 37401648 37408413 35291733 35298497 NC_060940.1 CM039049.1 99.47 True relocation, inconsistency = 344085 37754069 37756138 35300068 35302134 NC_060940.1 CM039049.1 99.14 True relocation, inconsistency = -327441 37428698 37444372 35302135 35317809 NC_060940.1 CM039049.1 99.76 True local misassembly 37438990 37446211 35317863 35325084 NC_060940.1 CM039049.1 99.57 True local misassembly 37441455 37443406 35325085 35327036 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 325063 37768470 37777702 35327037 35336269 NC_060940.1 CM039049.1 99.36 True relocation, inconsistency = -377378 37400605 37401623 35336550 35337568 NC_060940.1 CM039049.1 99.16 True relocation, inconsistency = 74060 37475684 37480192 35337569 35342077 NC_060940.1 CM039049.1 99.54 True relocation, inconsistency = -62853 37417340 37428211 35342078 35352949 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 54019 37482231 37491742 35352950 35362801 NC_060940.1 CM039049.1 97.26 True local misassembly 37488006 37502418 35362802 35377210 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = 279201 37781620 37782738 35377211 35378329 NC_060940.1 CM039049.1 99.38 True relocation, inconsistency = -192932 37589807 37600512 35378330 35389037 NC_060940.1 CM039049.1 99.43 True relocation, inconsistency = 42121 37642823 37659614 35389227 35406022 NC_060940.1 CM039049.1 99.64 True local misassembly 37654521 37655354 35406023 35406856 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = -16640 37638715 37641191 35406857 35409337 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -35666 37605526 37617324 35409338 35421136 NC_060940.1 CM039049.1 99.54 True local misassembly 37610530 37612183 35421137 35422791 NC_060940.1 CM039049.1 99.47 True relocation, inconsistency = 25139 37637323 37647791 35422792 35433264 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 16980 37664772 37685109 35433265 35453605 NC_060940.1 CM039049.1 99.61 True local misassembly 37691902 37729690 35453606 35491056 NC_060940.1 CM039049.1 98.8 True local misassembly 37732409 37736445 35491057 35495093 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = -129407 37607039 37613246 35495094 35501301 NC_060940.1 CM039049.1 99.58 True relocation, inconsistency = 116497 37729744 37739455 35501302 35511013 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -110722 37628734 37644496 35511014 35526782 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = 88645 37734161 37739833 35527802 35533475 NC_060940.1 CM039049.1 99.45 True relocation, inconsistency = -66571 37673263 37694007 35533476 35554222 NC_060940.1 CM039049.1 99.53 True relocation, inconsistency = 19359 37713440 37722857 35554296 35563713 NC_060940.1 CM039049.1 99.21 True relocation, inconsistency = -134843 37588015 37604360 35563714 35580055 NC_060940.1 CM039049.1 99.27 True relocation, inconsistency = 143336 37747697 37761621 35580056 35593975 NC_060940.1 CM039049.1 99.61 True local misassembly 37756527 37763999 35593976 35601448 NC_060940.1 CM039049.1 99.62 True relocation, inconsistency = -8492 37755561 37763999 35601502 35609940 NC_060940.1 CM039049.1 99.73 True local misassembly 37763034 37765751 35609994 35612711 NC_060940.1 CM039049.1 99.55 True local misassembly 37763034 37775551 35612712 35625229 NC_060940.1 CM039049.1 99.75 True relocation, inconsistency = -43143 37732409 37740221 35625230 35633042 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = 32962 37780463 37781427 35640322 35641286 NC_060940.1 CM039049.1 99.27 True indel: indel (> 5bp) 37781521 37789352 35641374 35649205 NC_060940.1 CM039049.1 99.81 True relocation, inconsistency = -146730 37642826 37651673 35649409 35658231 NC_060940.1 CM039049.1 99.04 True relocation, inconsistency = -230643 37421031 37426367 35658232 35663568 NC_060940.1 CM039049.1 99.27 True relocation, inconsistency = 320310 37746731 37752111 35663622 35669004 NC_060940.1 CM039049.1 99.55 True relocation, inconsistency = -391992 37360324 37366113 35669209 35674998 NC_060940.1 CM039049.1 99.27 True relocation, inconsistency = 416111 37784005 37786130 35676779 35678910 NC_060940.1 CM039049.1 99.39 True relocation, inconsistency = -358011 37428120 37436897 35678911 35687691 NC_060940.1 CM039049.1 99.36 True fake: not a misassembly (possible transposable element) 37466796 37470430 35687692 35691326 NC_060940.1 CM039049.1 99.54 True fake: not a misassembly (possible transposable element) 37438834 37446551 35691327 35699043 NC_060940.1 CM039049.1 99.43 True relocation, inconsistency = 338653 37785608 37794558 35699447 35708739 NC_060940.1 CM039049.1 95.02 True local misassembly 37793424 37794353 35709638 35710573 NC_060940.1 CM039049.1 95.94 True local misassembly 37795205 37799305 35711086 35715186 NC_060940.1 CM039049.1 99.39 True relocation, inconsistency = 12917 37812223 37827642 35715187 35730605 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = -11900 37815743 37832693 35730606 35747556 NC_060940.1 CM039049.1 99.9 True local misassembly 37835078 37843085 35747557 35755564 NC_060940.1 CM039049.1 99.84 True local misassembly 37844579 38099213 35757398 36013861 NC_060940.1 CM039049.1 98.74 True local misassembly 38104160 39510709 36013862 37420613 NC_060940.1 CM039049.1 99.95 True local misassembly 39517026 39558071 37420614 37461659 NC_060940.1 CM039049.1 99.98 True relocation, inconsistency = -10982 39547090 39548207 37462776 37461660 NC_060940.1 CM039049.1 97.61 True relocation, inconsistency = 1920559 41470290 41472998 37464300 37466988 NC_060940.1 CM039049.1 97.49 True relocation, inconsistency = 8824704 50299261 50304032 37468547 37473347 NC_060940.1 CM039049.1 98.56 True relocation, inconsistency = -10443937 39861455 39868962 37474707 37482262 NC_060940.1 CM039049.1 97.94 True relocation, inconsistency = 9156967 49025992 49027339 37482325 37483662 NC_060940.1 CM039049.1 97.7 True relocation, inconsistency = -547325 48480016 48483048 37483664 37486696 NC_060940.1 CM039049.1 99.31 True relocation, inconsistency = 1830170 50313220 50318745 37486698 37492224 NC_060940.1 CM039049.1 99.15 True relocation, inconsistency = -3408040 46910706 46918031 37492225 37499409 NC_060940.1 CM039049.1 97.07 True relocation, inconsistency = 2020474 48938506 48945769 37499410 37506673 NC_060940.1 CM039049.1 99.3 True relocation, inconsistency = -2702001 46243786 46245443 37506691 37508348 NC_060940.1 CM039049.1 99.34 True relocation, inconsistency = 2692711 48938506 48950367 37508700 37520197 NC_060940.1 CM039049.1 95.84 True relocation, inconsistency = 35758 48986126 48992345 37520198 37526394 NC_060940.1 CM039049.1 99.0 True relocation, inconsistency = -8518348 40473998 40479544 37526395 37531941 NC_060940.1 CM039049.1 99.28 True relocation, inconsistency = 9914132 50393677 50396629 37531942 37534910 NC_060940.1 CM039049.1 98.07 True relocation, inconsistency = -30021 50366955 50371784 37535257 37540086 NC_060940.1 CM039049.1 99.28 True relocation, inconsistency = -10795980 39575805 39601775 37540087 37566080 NC_060940.1 CM039049.1 99.7 True local misassembly 39607888 39613381 37566081 37571574 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = 181242 39794624 39818744 37571575 37595695 NC_060940.1 CM039049.1 99.78 True indel: stretch of mismatches 39818745 39825718 37595696 37602669 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = 258061 40083780 40099166 37602670 37618030 NC_060940.1 CM039049.1 99.58 True relocation, inconsistency = -274159 39825008 39866646 37618031 37659632 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 16066 39882718 39896485 37659638 37673405 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 77642 39974128 39982900 37673406 37682178 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 25338 40008239 40076687 37682179 37750605 NC_060940.1 CM039049.1 99.82 True indel: stretch of mismatches 40077082 40084682 37751000 37758600 NC_060940.1 CM039049.1 99.96 True local misassembly 40078571 40083349 37758601 37763379 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = -292412 39790938 39799438 37763380 37771903 NC_060940.1 CM039049.1 99.07 True relocation, inconsistency = 8403670 48203109 48205966 37771904 37774761 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = -4449072 43756895 43764954 37774762 37782821 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = 4666130 48431085 48432508 37782822 37784245 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -266044 48166465 48170040 37784246 37787821 NC_060940.1 CM039049.1 99.5 True relocation, inconsistency = -6805128 41364913 41376185 37787822 37799094 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 4099289 45475475 45476425 37799095 37800045 NC_060940.1 CM039049.1 99.29 True relocation, inconsistency = -4111513 41364913 41377572 37800046 37812705 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = -1293793 40083780 40106825 37812706 37835751 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 8142069 48248895 48277938 37835752 37864279 NC_060940.1 CM039049.1 97.8 True relocation, inconsistency = -8390786 39887153 39899300 37864280 37876306 NC_060940.1 CM039049.1 98.83 True relocation, inconsistency = 62198 39961499 39976092 37876307 37890901 NC_060940.1 CM039049.1 99.62 True relocation, inconsistency = 156538 40132631 40180496 37890902 37938941 NC_060940.1 CM039049.1 99.32 True relocation, inconsistency = -48775 40131722 40170363 37938942 37977531 NC_060940.1 CM039049.1 99.68 True relocation, inconsistency = 10110 40180474 40264601 37977532 38061659 NC_060940.1 CM039049.1 99.91 True local misassembly 40270714 40279880 38061660 38070826 NC_060940.1 CM039049.1 99.5 True relocation, inconsistency = 10018 40289899 40323696 38070827 38104663 NC_060940.1 CM039049.1 99.62 True local misassembly 40330539 40344125 38104664 38118253 NC_060940.1 CM039049.1 99.75 True relocation, inconsistency = 30239 40374365 40381570 38118254 38125459 NC_060940.1 CM039049.1 99.48 True local misassembly 40385227 40390227 38125460 38130460 NC_060940.1 CM039049.1 99.53 True local misassembly 40396342 40425631 38130461 38159700 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = 573398 40999030 41007834 38159701 38168456 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 8234688 49242523 49247131 38168457 38173066 NC_060940.1 CM039049.1 99.59 True relocation, inconsistency = -6973743 42273389 42274949 38173067 38174627 NC_060940.1 CM039049.1 98.81 True relocation, inconsistency = 1422221 43697171 43704839 38174628 38182297 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = -3279688 40425152 40442425 38182298 38199571 NC_060940.1 CM039049.1 99.95 True local misassembly 40448764 40457568 38199798 38208602 NC_060940.1 CM039049.1 99.68 True relocation, inconsistency = -12224 40445345 40448650 38208603 38211908 NC_060940.1 CM039049.1 99.81 True local misassembly 40442539 40451549 38211909 38220870 NC_060940.1 CM039049.1 99.32 True local misassembly 40448396 40457661 38221122 38230397 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = -12224 40445438 40446602 38230398 38231562 NC_060940.1 CM039049.1 99.29 True local misassembly 40452715 40470748 38231563 38249168 NC_060940.1 CM039049.1 97.09 True relocation, inconsistency = 8501105 48971854 48976059 38249169 38253374 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -8518412 40457648 40475691 38253375 38271408 NC_060940.1 CM039049.1 99.58 True local misassembly 40480709 40518356 38271409 38309060 NC_060940.1 CM039049.1 99.66 True relocation, inconsistency = 259530 40777887 40782963 38309061 38314140 NC_060940.1 CM039049.1 99.15 True relocation, inconsistency = -262640 40520324 40581397 38314141 38375215 NC_060940.1 CM039049.1 99.91 True relocation, inconsistency = 15970 40597368 40621977 38375216 38399825 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = 342418 40964397 40982644 38399827 38417934 NC_060940.1 CM039049.1 98.67 True relocation, inconsistency = -354862 40627783 40642114 38417935 38432266 NC_060940.1 CM039049.1 99.85 True relocation, inconsistency = 8532823 49174938 49178433 38432267 38435710 NC_060940.1 CM039049.1 99.2 True relocation, inconsistency = -8532823 40645611 40678630 38435711 38468730 NC_060940.1 CM039049.1 99.92 True local misassembly 40672571 40676868 38468731 38473028 NC_060940.1 CM039049.1 99.96 True indel: stretch of mismatches 40676869 40687471 38473029 38483631 NC_060940.1 CM039049.1 99.94 True local misassembly 40684218 40687448 38483632 38486862 NC_060940.1 CM039049.1 99.94 True local misassembly 40684195 40698486 38486863 38501236 NC_060940.1 CM039049.1 99.03 True indel: stretch of mismatches 40698934 40728727 38501684 38531477 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = 9743564 50472292 50483964 38531478 38543181 NC_060940.1 CM039049.1 98.27 True relocation, inconsistency = -9743902 40740063 40793910 38543182 38596980 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -19735 40774176 40784665 38596981 38607470 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = -12873 40771793 40852183 38607471 38687720 NC_060940.1 CM039049.1 99.5 True relocation, inconsistency = 9581 40861765 40867603 38687721 38693559 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = -557802 40309802 40324741 38693560 38708570 NC_060940.1 CM039049.1 98.06 True relocation, inconsistency = 523613 40848355 40879513 38708571 38739764 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = -68068 40811446 40833562 38739765 38761881 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = -281289 40552274 40583328 38761882 38792887 NC_060940.1 CM039049.1 99.51 True local misassembly 40586669 40621907 38792888 38828074 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 352502 40974410 40984594 38828075 38838259 NC_060940.1 CM039049.1 99.63 True indel: stretch of mismatches 40984595 41002961 38838260 38856626 NC_060940.1 CM039049.1 99.95 True fake: not a misassembly (possible transposable element) 40685749 40689040 38856627 38859918 NC_060940.1 CM039049.1 99.77 True fake: not a misassembly (possible transposable element) 41000142 41013946 38859919 38873723 NC_060940.1 CM039049.1 99.9 True indel: stretch of mismatches 41013947 41018477 38873724 38878254 NC_060940.1 CM039049.1 99.95 True indel: stretch of mismatches 41018478 41025826 38878255 38885603 NC_060940.1 CM039049.1 99.97 True relocation, inconsistency = -326893 40698934 40717335 38885604 38904002 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = 326897 41044233 41053912 38904003 38913682 NC_060940.1 CM039049.1 99.85 True relocation, inconsistency = -16328 41037585 41069113 38913683 38945211 NC_060940.1 CM039049.1 99.08 True local misassembly 41064664 41116384 38945212 38997664 NC_060940.1 CM039049.1 96.88 True relocation, inconsistency = 24434 41140819 41159373 38997665 39016121 NC_060940.1 CM039049.1 99.09 True fake: not a misassembly (possible transposable element) 41047258 41049023 39016122 39017887 NC_060940.1 CM039049.1 99.08 True fake: not a misassembly (possible transposable element) 41155080 41169084 39017888 39031941 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = 8906 41177991 41280688 39031942 39134639 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = -12195 41268494 41362710 39134640 39228838 NC_060940.1 CM039049.1 99.89 True local misassembly 41356600 41361789 39228839 39234029 NC_060940.1 CM039049.1 99.59 True local misassembly 41362877 41364270 39234249 39235642 NC_060940.1 CM039049.1 99.67 True local misassembly 41358159 41399477 39235643 39276962 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = 19635 41419113 41470413 39276963 39328262 NC_060940.1 CM039049.1 98.11 True relocation, inconsistency = -8289 41462125 41477310 39328263 39343448 NC_060940.1 CM039049.1 99.83 True relocation, inconsistency = 9034 41486345 41521809 39343449 39378919 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = 6786419 48308229 48321320 39378920 39392012 NC_060940.1 CM039049.1 99.41 True relocation, inconsistency = -6745478 41575843 41596890 39392013 39413060 NC_060940.1 CM039049.1 99.77 True indel: stretch of mismatches 41596891 41612740 39413061 39428910 NC_060940.1 CM039049.1 99.95 True indel: stretch of mismatches 41612741 41639349 39428911 39455519 NC_060940.1 CM039049.1 99.92 True local misassembly 41645462 41655150 39455520 39465208 NC_060940.1 CM039049.1 99.9 True relocation, inconsistency = -42410 41612741 41646908 39465209 39499376 NC_060940.1 CM039049.1 99.93 True relocation, inconsistency = 59242 41706151 41712131 39499377 39505358 NC_060940.1 CM039049.1 99.38 True relocation, inconsistency = 1713729 43425861 43430915 39505359 39510416 NC_060940.1 CM039049.1 99.3 True relocation, inconsistency = 6119045 49549961 49558918 39510417 39519347 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = -5498254 44060665 44095708 39519348 39553916 NC_060940.1 CM039049.1 98.4 True relocation, inconsistency = 5259090 49354799 49356398 39553917 39555516 NC_060940.1 CM039049.1 99.31 True relocation, inconsistency = -7654500 41701899 41705620 39555517 39559238 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = -89802 41615819 41646908 39559239 39590328 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = 59242 41706151 41707251 39590329 39591429 NC_060940.1 CM039049.1 99.34 True relocation, inconsistency = -22947 41684305 41691919 39591430 39598995 NC_060940.1 CM039049.1 98.74 True relocation, inconsistency = 22897 41714817 41726170 39598996 39610299 NC_060940.1 CM039049.1 99.2 True relocation, inconsistency = 2334494 44060665 44095708 39610300 39644868 NC_060940.1 CM039049.1 98.41 True relocation, inconsistency = -2308996 41786713 41788371 39644869 39646488 NC_060940.1 CM039049.1 97.52 True relocation, inconsistency = 7909295 49697667 49747900 39646489 39697049 NC_060940.1 CM039049.1 98.75 True relocation, inconsistency = -7934771 41813143 41834151 39697063 39717973 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 7945483 49779635 49781682 39717974 39720021 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = -6699588 43082095 43087914 39720022 39725831 NC_060940.1 CM039049.1 99.4 True relocation, inconsistency = -1253781 41834134 41846760 39725832 39738458 NC_060940.1 CM039049.1 99.69 True local misassembly 41840646 41868143 39738459 39765934 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 1095204 42963348 42967511 39765935 39770098 NC_060940.1 CM039049.1 99.7 True relocation, inconsistency = -1103928 41863681 41884436 39770196 39790951 NC_060940.1 CM039049.1 99.92 True relocation, inconsistency = -2048032 39836405 39840036 39790952 39794583 NC_060940.1 CM039049.1 99.72 True relocation, inconsistency = 8762933 48602990 48605790 39794604 39797404 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = -6771657 41834134 41846760 39797405 39810031 NC_060940.1 CM039049.1 99.69 True local misassembly 41840646 41868143 39810032 39837507 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 86590 41954734 41958908 39837508 39841682 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = -95314 41863681 41884174 39841769 39862263 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = 6083175 47967350 47969572 39862264 39864486 NC_060940.1 CM039049.1 99.54 True relocation, inconsistency = 293536 48263109 48267156 39864487 39868534 NC_060940.1 CM039049.1 99.8 True local misassembly 48267583 48269197 39868535 39870149 NC_060940.1 CM039049.1 99.32 True indel: indel (> 5bp) 48269221 48271551 39870150 39872480 NC_060940.1 CM039049.1 98.71 True indel: indel (> 5bp) 48271552 48273122 39872489 39874059 NC_060940.1 CM039049.1 98.73 True local misassembly 48273470 48279892 39874859 39881281 NC_060940.1 CM039049.1 99.22 True indel: indel (> 5bp) 48279899 48281171 39881282 39882554 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = -7235791 41045381 41048959 39882555 39886133 NC_060940.1 CM039049.1 98.82 True relocation, inconsistency = 1112165 42161125 42177269 39886134 39902269 NC_060940.1 CM039049.1 99.28 True relocation, inconsistency = 6121648 48298918 48316511 39902270 39919804 NC_060940.1 CM039049.1 99.1 True relocation, inconsistency = -5054113 43262399 43308064 39919805 39965587 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -1050992 42257990 42268373 39966505 39976689 NC_060940.1 CM039049.1 97.68 True relocation, inconsistency = 9491899 51760273 51762039 39976690 39978457 NC_060940.1 CM039049.1 97.61 True relocation, inconsistency = -9504050 42257990 42284555 39978458 40005000 NC_060940.1 CM039049.1 99.78 True relocation, inconsistency = 3732797 46017353 46020839 40005001 40008487 NC_060940.1 CM039049.1 99.67 True local misassembly 46014728 46019349 40008488 40013109 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -2020796 43998554 44014729 40013110 40029223 NC_060940.1 CM039049.1 99.41 True relocation, inconsistency = -660995 43353735 43356345 40029224 40031834 NC_060940.1 CM039049.1 99.68 True relocation, inconsistency = 1328337 44684683 44692470 40031835 40039622 NC_060940.1 CM039049.1 99.72 True local misassembly 44686359 44698465 40039623 40051729 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -2361326 42337534 42343262 40052124 40057852 NC_060940.1 CM039049.1 99.89 True relocation, inconsistency = 7007718 49350981 49368972 40057853 40075844 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -4646392 44722581 44762360 40075845 40115628 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -2318609 42443752 42445191 40115629 40117068 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 2317429 44762621 44794391 40117069 40148832 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = -713474 44080918 44097437 40148833 40165353 NC_060940.1 CM039049.1 99.8 True relocation, inconsistency = -11681 44085757 44091363 40165354 40170961 NC_060940.1 CM039049.1 99.85 True local misassembly 44086224 44096336 40170962 40181075 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = 3633079 47729416 47757643 40181076 40209164 NC_060940.1 CM039049.1 99.13 True relocation, inconsistency = -4222453 43535191 43551432 40209165 40225406 NC_060940.1 CM039049.1 99.03 True relocation, inconsistency = 514322 44065755 44070335 40225407 40229987 NC_060940.1 CM039049.1 99.38 True relocation, inconsistency = 3760963 47831299 47853205 40229988 40251895 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -1439855 46413351 46432130 40251896 40270750 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = -4503612 41928519 41970416 40270751 40312678 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = 5984531 47954948 47986386 40312679 40344114 NC_060940.1 CM039049.1 99.82 True relocation, inconsistency = -5935758 42050629 42060857 40344115 40354343 NC_060940.1 CM039049.1 99.94 True relocation, inconsistency = 5951312 48012170 48038485 40354344 40380670 NC_060940.1 CM039049.1 99.66 True relocation, inconsistency = -5962583 42075903 42079332 40380671 40384100 NC_060940.1 CM039049.1 99.97 True indel: indel (<= 5bp) 42079336 42086330 40384101 40391095 NC_060940.1 CM039049.1 99.92 True relocation, inconsistency = 6031404 48117735 48171515 40391096 40444488 NC_060940.1 CM039049.1 98.98 True relocation, inconsistency = -3047575 45123941 45129360 40444489 40449934 NC_060940.1 CM039049.1 98.53 True relocation, inconsistency = 5602027 50731388 50735306 40449935 40453853 NC_060940.1 CM039049.1 99.92 True relocation, inconsistency = -12224 50723083 50734866 40453854 40465660 NC_060940.1 CM039049.1 99.62 True relocation, inconsistency = 833017 51567884 51569213 40465661 40466990 NC_060940.1 CM039049.1 98.95 True relocation, scaffold gap is present, inconsistency = 841231 50714108 50726452 40479535 40467191 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -854429 51565487 51568536 40482608 40479536 NC_060940.1 CM039049.1 99.01 True local misassembly 51552288 51558839 40489160 40482609 NC_060940.1 CM039049.1 99.59 True indel: stretch of mismatches 51545024 51552198 40496385 40489250 NC_060940.1 CM039049.1 98.69 True relocation, inconsistency = 324693 51218338 51220330 40498365 40496386 NC_060940.1 CM039049.1 98.88 True relocation, inconsistency = 509002 50703224 50709335 40504477 40498366 NC_060940.1 CM039049.1 99.6 True local misassembly 50666397 50709335 40547220 40504478 NC_060940.1 CM039049.1 99.44 True relocation, inconsistency = 642593 50021990 50023386 40549034 40547638 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 5794420 44222204 44227569 40554408 40549035 NC_060940.1 CM039049.1 99.11 True relocation, inconsistency = -7829022 52047326 52050311 40558308 40555323 NC_060940.1 CM039049.1 99.4 True relocation, inconsistency = 10758464 41288258 41288861 40558912 40558309 NC_060940.1 CM039049.1 98.8 True relocation, inconsistency = -9380652 50662440 50668909 40565382 40558913 NC_060940.1 CM039049.1 99.52 True local misassembly 50650598 50657643 40572428 40565383 NC_060940.1 CM039049.1 99.87 True indel: indel (> 5bp) 50647419 50650597 40575656 40572478 NC_060940.1 CM039049.1 99.91 True local misassembly 50620363 50641309 40596600 40575657 NC_060940.1 CM039049.1 99.8 True relocation, inconsistency = 11829 50606869 50608533 40598265 40596601 NC_060940.1 CM039049.1 99.63 True local misassembly 50591369 50603219 40610620 40598770 NC_060940.1 CM039049.1 99.79 True local misassembly 50591519 50597457 40616558 40610621 NC_060940.1 CM039049.1 99.66 True local misassembly 50579028 50597607 40635137 40616559 NC_060940.1 CM039049.1 99.3 True relocation, inconsistency = 9710660 40863739 40867586 40639750 40635919 NC_060940.1 CM039049.1 97.95 True relocation, inconsistency = -9744156 50594772 50607894 40652892 40639751 NC_060940.1 CM039049.1 99.18 True local misassembly 50583169 50588682 40658409 40652893 NC_060940.1 CM039049.1 99.04 True relocation, inconsistency = 4459035 46109736 46124133 40672849 40658410 NC_060940.1 CM039049.1 98.98 True relocation, inconsistency = -4475055 50579028 50584790 40678616 40672850 NC_060940.1 CM039049.1 98.61 True relocation, inconsistency = 8000314 42573174 42578667 40684058 40678663 NC_060940.1 CM039049.1 98.17 True relocation, inconsistency = -8034721 50579028 50607894 40712909 40684059 NC_060940.1 CM039049.1 99.33 True relocation, inconsistency = -12177 50582258 50591204 40721853 40712910 NC_060940.1 CM039049.1 99.02 True relocation, inconsistency = 7525022 43054110 43056256 40724979 40722833 NC_060940.1 CM039049.1 97.78 True relocation, inconsistency = -8110108 51158714 51164217 40730473 40724980 NC_060940.1 CM039049.1 99.07 True relocation, inconsistency = 2856554 48295300 48302159 40737322 40730474 NC_060940.1 CM039049.1 99.03 True relocation, inconsistency = -350198 48640084 48645350 40742661 40737470 NC_060940.1 CM039049.1 97.72 True relocation, inconsistency = 8973602 39661755 39666481 40747387 40742662 NC_060940.1 CM039049.1 98.97 True relocation, inconsistency = -81634 39736905 39743388 40753888 40747388 NC_060940.1 CM039049.1 98.67 True relocation, inconsistency = -1372869 41100466 41109773 40763275 40753889 NC_060940.1 CM039049.1 97.8 True relocation, inconsistency = -9475473 50549900 50575938 40789250 40763276 NC_060940.1 CM039049.1 98.99 True relocation, inconsistency = 78938 50462675 50470926 40797638 40789286 NC_060940.1 CM039049.1 97.47 True relocation, inconsistency = -77948 50462358 50540237 40875937 40798024 NC_060940.1 CM039049.1 99.77 True relocation, inconsistency = -94312 50551589 50556577 40881067 40876030 NC_060940.1 CM039049.1 97.74 True relocation, inconsistency = 125995 50424219 50425578 40882442 40881083 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = 1378877 49037842 49045341 40889922 40882443 NC_060940.1 CM039049.1 99.03 True relocation, inconsistency = 4265640 44768671 44772201 40893452 40889923 NC_060940.1 CM039049.1 98.19 True relocation, inconsistency = -4281196 49041871 49049866 40901409 40893453 NC_060940.1 CM039049.1 97.86 True relocation, inconsistency = -3008428 52046972 52050298 40904715 40901410 NC_060940.1 CM039049.1 97.01 True relocation, inconsistency = 7274759 44768671 44772212 40908256 40904716 NC_060940.1 CM039049.1 98.16 True relocation, inconsistency = -4281196 49041871 49049866 40916213 40908257 NC_060940.1 CM039049.1 97.86 True relocation, inconsistency = -3081754 52120695 52123624 40919145 40916214 NC_060940.1 CM039049.1 97.57 True relocation, inconsistency = 12528636 39589674 39591962 40921553 40919242 NC_060940.1 CM039049.1 97.99 True relocation, inconsistency = -9462081 49035076 49051754 40938239 40921554 NC_060940.1 CM039049.1 98.21 True relocation, inconsistency = 87947 48942069 48947128 40943299 40938240 NC_060940.1 CM039049.1 98.7 True local misassembly 48944174 48947022 40946148 40943300 NC_060940.1 CM039049.1 98.57 True relocation, inconsistency = -1422684 50359742 50366856 40953263 40946150 NC_060940.1 CM039049.1 99.02 True relocation, inconsistency = -53626 50384664 50413367 40981796 40953264 NC_060940.1 CM039049.1 99.11 True relocation, inconsistency = 41979 50335949 50342683 40988576 40981798 NC_060940.1 CM039049.1 98.58 True relocation, inconsistency = -31094 50333725 50366856 41021868 40988763 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 9013 50285755 50324711 41060616 41021869 NC_060940.1 CM039049.1 99.35 True relocation, inconsistency = -9982 50212551 50295736 41144003 41060617 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = 35201 50161206 50177322 41160147 41144031 NC_060940.1 CM039049.1 99.78 True relocation, inconsistency = 8864493 41293288 41296712 41163749 41160148 NC_060940.1 CM039049.1 97.97 True relocation, inconsistency = -8866502 50144376 50159789 41179163 41163750 NC_060940.1 CM039049.1 99.8 True local misassembly 50113477 50138264 41203951 41179164 NC_060940.1 CM039049.1 99.89 True relocation, inconsistency = 33697 50064514 50079779 41219315 41203952 NC_060940.1 CM039049.1 97.75 True fake: not a misassembly (possible transposable element) 40213566 40214677 41220427 41219316 NC_060940.1 CM039049.1 99.43 True fake: not a misassembly (possible transposable element) 50059147 50069513 41230771 41220428 NC_060940.1 CM039049.1 99.27 True relocation, inconsistency = 9837589 40213566 40221557 41238763 41230772 NC_060940.1 CM039049.1 99.45 True relocation, inconsistency = -9855948 50053150 50069513 41255127 41238764 NC_060940.1 CM039049.1 99.9 True relocation, inconsistency = 94162 49954290 49958987 41259825 41255128 NC_060940.1 CM039049.1 99.9 True local misassembly 49930000 49948177 41278002 41259826 NC_060940.1 CM039049.1 99.25 True relocation, inconsistency = -108797 49968654 50038796 41348119 41278003 NC_060940.1 CM039049.1 99.9 True relocation, inconsistency = -106648 50066152 50075301 41357269 41348120 NC_060940.1 CM039049.1 99.86 True local misassembly 50054912 50072263 41374592 41357270 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 98214 49953348 49956697 41377942 41374593 NC_060940.1 CM039049.1 99.94 True indel: stretch of mismatches 49922202 49953347 41409087 41377943 NC_060940.1 CM039049.1 99.91 True relocation, inconsistency = -87800 50002496 50010001 41416616 41409088 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 77940 49900500 49924225 41440597 41416947 NC_060940.1 CM039049.1 99.17 True relocation, inconsistency = -25987 49890755 49926486 41476702 41440598 NC_060940.1 CM039049.1 98.6 True relocation, inconsistency = 559396 49319853 49331358 41488189 41476703 NC_060940.1 CM039049.1 99.15 True relocation, inconsistency = 9396215 39919436 39923637 41492391 41488190 NC_060940.1 CM039049.1 99.0 True local misassembly 39918617 39925291 41499069 41492392 NC_060940.1 CM039049.1 99.01 True relocation, inconsistency = -3152200 43067169 43070816 41502717 41499070 NC_060940.1 CM039049.1 98.49 True relocation, inconsistency = 3318231 39693139 39748539 41558599 41503116 NC_060940.1 CM039049.1 99.41 True relocation, inconsistency = -9169786 48842985 48862924 41578539 41558600 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -1023702 49862989 49866686 41582237 41578540 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = 1907463 47937906 47955525 41599832 41582238 NC_060940.1 CM039049.1 99.5 True relocation, inconsistency = 7771150 40148129 40166755 41618442 41599833 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = -1168439 41305590 41316567 41629413 41618443 NC_060940.1 CM039049.1 99.55 True local misassembly 41302299 41304547 41632502 41630254 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = -8548025 49847905 49850323 41634921 41632503 NC_060940.1 CM039049.1 99.45 True relocation, inconsistency = 38541 49797243 49809363 41647042 41634922 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 10956 49732067 49786286 41701370 41647043 NC_060940.1 CM039049.1 98.97 True relocation, inconsistency = 7943695 41781207 41788371 41708486 41701371 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = -7947561 49683220 49728767 41754054 41708487 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = 21902 49656994 49661317 41758378 41754055 NC_060940.1 CM039049.1 99.59 True relocation, inconsistency = 2692871 46948472 46964122 41774028 41758379 NC_060940.1 CM039049.1 99.58 True indel: stretch of mismatches 46944083 46948471 41778466 41774029 NC_060940.1 CM039049.1 99.06 True relocation, inconsistency = -2692115 49615392 49636197 41799272 41778467 NC_060940.1 CM039049.1 99.8 True relocation, inconsistency = 24455 49528513 49590936 41861706 41799273 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 10945 49512271 49517567 41867003 41861707 NC_060940.1 CM039049.1 99.13 True relocation, inconsistency = 70523 49434453 49441747 41874298 41867004 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = -88009 49478079 49522461 41918582 41874299 NC_060940.1 CM039049.1 99.61 True local misassembly 49405213 49471966 41985385 41918583 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = 163920 49206500 49241292 42020101 41985386 NC_060940.1 CM039049.1 99.41 True local misassembly 49184649 49200439 42035892 42020102 NC_060940.1 CM039049.1 99.92 True indel: stretch of mismatches 49174903 49184648 42045635 42035893 NC_060940.1 CM039049.1 99.69 True relocation, inconsistency = 31361 49110958 49143541 42078218 42045636 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 8744474 40311136 40366483 42133643 42078219 NC_060940.1 CM039049.1 99.6 True relocation, inconsistency = -8769482 49051093 49080617 42163244 42133644 NC_060940.1 CM039049.1 99.66 True local misassembly 49040215 49044955 42167985 42163245 NC_060940.1 CM039049.1 99.02 True local misassembly 49035065 49041112 42174033 42167986 NC_060940.1 CM039049.1 99.93 True indel: indel (<= 5bp) 49020772 49035011 42188323 42174084 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 14815 48970788 49005956 42223505 42188324 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -21496 48970435 48992283 42245359 42223506 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -12336 48967089 48982770 42261033 42245360 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 9402581 39556850 39564507 42268688 42261034 NC_060940.1 CM039049.1 98.51 True relocation, inconsistency = -9419508 48970444 48976357 42274606 42268689 NC_060940.1 CM039049.1 99.55 True local misassembly 48940381 48973784 42308005 42274607 NC_060940.1 CM039049.1 99.53 True relocation, inconsistency = 12136 48918182 48928212 42318047 42308038 NC_060940.1 CM039049.1 99.15 True indel: stretch of mismatches 48903006 48918181 42333197 42318048 NC_060940.1 CM039049.1 99.4 True fake: not a misassembly (possible transposable element) 44654626 44655671 42334242 42333198 NC_060940.1 CM039049.1 99.59 True fake: not a misassembly (possible transposable element) 48893076 48908048 42349238 42334243 NC_060940.1 CM039049.1 99.75 True relocation, inconsistency = -23455 48909095 48916530 42356674 42349239 NC_060940.1 CM039049.1 99.87 True fake: not a misassembly (possible transposable element) 42287188 42288233 42357720 42356675 NC_060940.1 CM039049.1 99.63 True fake: not a misassembly (possible transposable element) 48893091 48908048 42372701 42357721 NC_060940.1 CM039049.1 99.74 True local misassembly 48870634 48898232 42400300 42372702 NC_060940.1 CM039049.1 99.7 True relocation, inconsistency = -14223 48857988 48884856 42427192 42400301 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -26869 48841017 48884856 42471461 42427193 NC_060940.1 CM039049.1 98.68 True relocation, inconsistency = 12209 48821677 48828807 42478592 42471462 NC_060940.1 CM039049.1 99.81 True relocation, inconsistency = 18751 48792974 48802925 42488472 42478593 NC_060940.1 CM039049.1 99.19 True indel: stretch of mismatches 48782141 48792973 42499305 42488473 NC_060940.1 CM039049.1 99.94 True indel: stretch of mismatches 48756142 48782140 42525252 42499306 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = 9965 48740749 48746176 42531093 42525253 NC_060940.1 CM039049.1 95.71 True local misassembly 48690960 48736296 42576019 42531094 NC_060940.1 CM039049.1 98.91 True relocation, inconsistency = -12220 48683128 48703179 42596097 42576020 NC_060940.1 CM039049.1 99.36 True local misassembly 48687011 48689239 42598326 42596098 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 27834 48636911 48659176 42620592 42598327 NC_060940.1 CM039049.1 99.78 True local misassembly 48620637 48638029 42638186 42620795 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = -17393 48606406 48638029 42669807 42638187 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = -22502 48620637 48628907 42678078 42669808 NC_060940.1 CM039049.1 98.53 True relocation, inconsistency = 14363 48589544 48606273 42694821 42678079 NC_060940.1 CM039049.1 99.78 True relocation, inconsistency = 25270 48479520 48564273 42779489 42694822 NC_060940.1 CM039049.1 99.7 True relocation, inconsistency = 15441 48400951 48464078 42842617 42779490 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = -544391 48937266 48945341 42850684 42842618 NC_060940.1 CM039049.1 97.62 True relocation, inconsistency = -1056372 49980442 49993637 42863901 42850685 NC_060940.1 CM039049.1 99.09 True relocation, inconsistency = 6006445 43973398 43973996 42864500 42863902 NC_060940.1 CM039049.1 99.44 True local misassembly 43972138 43973108 42865471 42864501 NC_060940.1 CM039049.1 99.49 True indel: indel (> 5bp) 43970381 43972137 42867251 42865495 NC_060940.1 CM039049.1 98.86 True relocation, inconsistency = -4452288 48418899 48422327 42871021 42867593 NC_060940.1 CM039049.1 99.78 True local misassembly 48388319 48412786 42895494 42871022 NC_060940.1 CM039049.1 99.66 True relocation, inconsistency = -550488 48937266 48938806 42897036 42895495 NC_060940.1 CM039049.1 97.63 True relocation, inconsistency = -1056372 49980442 49993637 42910253 42897037 NC_060940.1 CM039049.1 99.09 True relocation, inconsistency = -172930 50150814 50153371 42912522 42910254 NC_060940.1 CM039049.1 96.08 True relocation, inconsistency = 1810884 48330241 48339929 42922211 42912523 NC_060940.1 CM039049.1 99.67 True local misassembly 48231615 48324128 43014724 42922212 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = 822999 47383289 47408615 43040051 43014725 NC_060940.1 CM039049.1 99.75 True relocation, inconsistency = -845183 48179357 48228471 43088752 43040052 NC_060940.1 CM039049.1 98.83 True relocation, inconsistency = -8011 48117735 48187367 43155931 43088753 NC_060940.1 CM039049.1 95.69 True relocation, inconsistency = 68883 48020280 48048481 43184500 43156302 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 5341609 42661541 42678670 43201631 43184501 NC_060940.1 CM039049.1 99.49 True relocation, inconsistency = -5318806 47946709 47980346 43235269 43201632 NC_060940.1 CM039049.1 99.93 True relocation, inconsistency = -83465 48023399 48029995 43242044 43235448 NC_060940.1 CM039049.1 99.83 True relocation, inconsistency = 5341576 42661541 42681822 43262294 43242045 NC_060940.1 CM039049.1 99.48 True relocation, inconsistency = -5318806 47930372 47980346 43312270 43262295 NC_060940.1 CM039049.1 99.74 True relocation, inconsistency = 3651836 44267108 44278535 43323721 43312271 NC_060940.1 CM039049.1 99.05 True relocation, inconsistency = -3700038 47962974 47967145 43327893 43323722 NC_060940.1 CM039049.1 99.04 True relocation, inconsistency = -1876087 49838170 49839060 43328768 43327894 NC_060940.1 CM039049.1 99.12 True relocation, inconsistency = 1937639 47886183 47900530 43343116 43328769 NC_060940.1 CM039049.1 99.91 True local misassembly 47884389 47891913 43350641 43343117 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 4948721 42923500 42935666 43362809 43350643 NC_060940.1 CM039049.1 99.94 True relocation, inconsistency = -3495946 46409349 46419445 43372906 43362810 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 2202274 44190309 44207074 43389675 43372907 NC_060940.1 CM039049.1 99.78 True relocation, inconsistency = 246523 43921246 43943785 43412189 43389676 NC_060940.1 CM039049.1 99.55 True relocation, inconsistency = -5331567 49247805 49252812 43417197 43412190 NC_060940.1 CM039049.1 99.03 True relocation, inconsistency = 1850921 47364471 47396883 43449633 43417198 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 2088238 45217127 45276232 43508754 43449634 NC_060940.1 CM039049.1 99.73 True local misassembly 45215761 45217376 43511093 43509478 NC_060940.1 CM039049.1 99.68 True local misassembly 45190990 45209648 43529762 43511094 NC_060940.1 CM039049.1 99.66 True relocation, inconsistency = -41132 45215646 45232121 43546233 43529763 NC_060940.1 CM039049.1 99.9 True relocation, inconsistency = 1413721 43781431 43801694 43566737 43546464 NC_060940.1 CM039049.1 99.72 True indel: stretch of mismatches 43755877 43781430 43592286 43566738 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = -18264 43702456 43774140 43664136 43592287 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = 945951 42718837 42756504 43701804 43664137 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = -5328730 48030486 48047566 43719051 43701805 NC_060940.1 CM039049.1 98.54 True relocation, inconsistency = 160111 47826646 47870374 43762919 43719052 NC_060940.1 CM039049.1 99.31 True relocation, inconsistency = 5268860 42541714 42557785 43778991 43762920 NC_060940.1 CM039049.1 99.44 True relocation, inconsistency = -4444411 46914250 46986124 43850994 43778992 NC_060940.1 CM039049.1 99.55 True relocation, inconsistency = 2116243 44772290 44798006 43876705 43850995 NC_060940.1 CM039049.1 99.62 True relocation, inconsistency = 2361453 42355158 42410836 43932352 43876706 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = -2349102 44692298 44703841 43944314 43932771 NC_060940.1 CM039049.1 99.91 True relocation, inconsistency = 2367438 42267603 42324859 44001571 43944315 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = -1700319 43963455 43967921 44006061 44001572 NC_060940.1 CM039049.1 98.39 True relocation, inconsistency = -3616130 47573496 47579584 44012173 44006062 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = 4265431 43290070 43308064 44030167 44012174 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = -10462 43291466 43300531 44039233 44030168 NC_060940.1 CM039049.1 99.75 True local misassembly 43207929 43288239 44119627 44039234 NC_060940.1 CM039049.1 99.77 True relocation, inconsistency = -726813 43924701 43934741 44129655 44119628 NC_060940.1 CM039049.1 99.0 True relocation, inconsistency = -1410698 45309286 45335398 44155768 44129656 NC_060940.1 CM039049.1 99.89 True relocation, inconsistency = 874579 44395966 44434706 44194509 44155769 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = 1625522 42759752 42770443 44205371 44194510 NC_060940.1 CM039049.1 99.18 True relocation, inconsistency = -5394853 48117735 48154604 44242193 44205372 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 6031404 42053340 42086330 44274804 44242194 NC_060940.1 CM039049.1 98.18 True relocation, inconsistency = -2307175 44325341 44360208 44310000 44275111 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = 2306499 41928502 42018841 44400389 44310001 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = -5917374 47834115 47845875 44412177 44400390 NC_060940.1 CM039049.1 99.5 True relocation, inconsistency = 1560194 46260272 46273920 44425826 44412178 NC_060940.1 CM039049.1 99.57 True relocation, inconsistency = 3668012 42571474 42592259 44446612 44425827 NC_060940.1 CM039049.1 99.78 True relocation, inconsistency = -986818 43529008 43558291 44475896 44446613 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = 1786350 41737565 41742657 44480989 44475897 NC_060940.1 CM039049.1 98.69 True relocation, inconsistency = -2359426 44090198 44096990 44487728 44480990 NC_060940.1 CM039049.1 99.39 True local misassembly 44085757 44095337 44497309 44487729 NC_060940.1 CM039049.1 99.79 True relocation, inconsistency = -11681 44080918 44097437 44513830 44497310 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -713474 44768362 44794391 44539853 44513831 NC_060940.1 CM039049.1 99.45 True relocation, inconsistency = 2355390 42379359 42412971 44573350 44539854 NC_060940.1 CM039049.1 99.22 True relocation, inconsistency = -7036755 49406917 49415845 44582544 44573619 NC_060940.1 CM039049.1 99.04 True relocation, inconsistency = 4668985 44731717 44737931 44588759 44582545 NC_060940.1 CM039049.1 99.75 True relocation, inconsistency = 2367438 42337151 42364278 44615887 44588760 NC_060940.1 CM039049.1 99.71 True relocation, inconsistency = -5316041 47642706 47653191 44626134 44615888 NC_060940.1 CM039049.1 98.04 True relocation, inconsistency = 1600747 46014728 46041958 44653254 44626135 NC_060940.1 CM039049.1 99.42 True relocation, inconsistency = -48334 46060166 46063061 44656088 44653255 NC_060940.1 CM039049.1 98.31 True relocation, inconsistency = 2068694 43979241 43991471 44668735 44656089 NC_060940.1 CM039049.1 95.29 True relocation, inconsistency = 1694685 42257990 42284555 44695301 44668736 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = -9504050 51760273 51762039 44697069 44695302 NC_060940.1 CM039049.1 97.9 True relocation, inconsistency = 9491899 42257990 42268373 44707453 44697070 NC_060940.1 CM039049.1 99.6 True relocation, inconsistency = -9504050 51761123 51762039 44708370 44707454 NC_060940.1 CM039049.1 97.96 True relocation, inconsistency = 4187627 47567384 47573495 44714482 44708371 NC_060940.1 CM039049.1 99.96 True relocation, inconsistency = 4259319 43262399 43308064 44760194 44714483 NC_060940.1 CM039049.1 99.47 True relocation, inconsistency = -1302892 44556006 44565290 44769466 44760195 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -816696 45334633 45372701 44807516 44769467 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = -4218956 49549081 49553588 44812024 44807517 NC_060940.1 CM039049.1 98.1 True relocation, inconsistency = 8090559 41440099 41458521 44830018 44812025 NC_060940.1 CM039049.1 97.16 True relocation, inconsistency = -6831279 48248470 48271314 44852898 44830082 NC_060940.1 CM039049.1 99.39 True relocation, inconsistency = 6372287 41862693 41876182 44866388 44852899 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -8805872 50667474 50668564 44867479 44866389 NC_060940.1 CM039049.1 98.96 True relocation, inconsistency = 883599 49779635 49783874 44871709 44867480 NC_060940.1 CM039049.1 99.16 True relocation, inconsistency = 7945483 41815192 41834151 44890669 44871710 NC_060940.1 CM039049.1 99.61 True relocation, inconsistency = -3141541 44853485 44956732 44993431 44890670 NC_060940.1 CM039049.1 98.75 True relocation, inconsistency = 2348680 42495886 42504804 45002327 44993432 NC_060940.1 CM039049.1 99.54 True relocation, inconsistency = -1601590 44043179 44095708 45056140 45004095 NC_060940.1 CM039049.1 98.67 True relocation, inconsistency = -5522732 49528513 49565910 45093513 45056141 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 7826614 41698030 41701898 45097382 45093514 NC_060940.1 CM039049.1 99.86 True local misassembly 41683204 41696071 45110250 45097383 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = 36295 41629172 41646908 45127987 45110251 NC_060940.1 CM039049.1 99.86 True local misassembly 41618906 41623059 45132141 45127988 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -36298 41643354 41655203 45143991 45132142 NC_060940.1 CM039049.1 99.82 True relocation, inconsistency = -11850 41637547 41655203 45161648 45143992 NC_060940.1 CM039049.1 99.85 True fake: not a misassembly (possible transposable element) 41595960 41601248 45166937 45161649 NC_060940.1 CM039049.1 99.85 True fake: not a misassembly (possible transposable element) 41619488 41625771 45173221 45166938 NC_060940.1 CM039049.1 99.67 True relocation, inconsistency = 23700 41584581 41595787 45184428 45173222 NC_060940.1 CM039049.1 99.75 True local misassembly 41556535 41590317 45218210 45184429 NC_060940.1 CM039049.1 99.79 True relocation, inconsistency = 12224 41527449 41544310 45235072 45218211 NC_060940.1 CM039049.1 99.76 True relocation, inconsistency = -6792139 48292400 48319587 45262192 45235073 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = -11109 48302160 48303508 45263541 45262193 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = -1719830 50007760 50021989 45277748 45263542 NC_060940.1 CM039049.1 99.26 True relocation, inconsistency = 8492332 41465310 41515427 45327739 45277749 NC_060940.1 CM039049.1 99.37 True relocation, inconsistency = 43460 41394620 41421849 45354995 45327740 NC_060940.1 CM039049.1 98.58 True indel: stretch of mismatches 41358159 41394619 45391457 45354996 NC_060940.1 CM039049.1 99.89 True local misassembly 41362885 41364270 45392843 45391458 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -4863418 46220934 46226302 45398261 45392844 NC_060940.1 CM039049.1 98.91 True relocation, inconsistency = 4858223 41334943 41362710 45425987 45398262 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = 11392 41316161 41323550 45433377 45425988 NC_060940.1 CM039049.1 99.72 True relocation, inconsistency = 11613 41267819 41304547 45470101 45433378 NC_060940.1 CM039049.1 99.81 True relocation, inconsistency = -9790437 51053306 51058255 45475051 45470102 NC_060940.1 CM039049.1 99.97 True indel: indel (> 5bp) 51036571 51053256 45491737 45475052 NC_060940.1 CM039049.1 99.95 True local misassembly 51031251 51036570 45497181 45491862 NC_060940.1 CM039049.1 99.85 True local misassembly 51027399 51027957 45497740 45497182 NC_060940.1 CM039049.1 100.0 True local misassembly 51007991 51020676 45510426 45497741 NC_060940.1 CM039049.1 99.83 True local misassembly 50997813 51001878 45514492 45510427 NC_060940.1 CM039049.1 99.68 True local misassembly 50987329 51003924 45531088 45514493 NC_060940.1 CM039049.1 99.86 True relocation, inconsistency = -410259 51385025 51397587 45543710 45531089 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = 46469 51321024 51338555 45561244 45543711 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 346084 50967334 50974939 45568850 45561245 NC_060940.1 CM039049.1 99.85 True relocation, inconsistency = 19919 50938594 50947414 45577671 45568851 NC_060940.1 CM039049.1 99.85 True local misassembly 50877991 50944705 45644314 45577672 NC_060940.1 CM039049.1 99.82 True local misassembly 50860993 50871878 45655200 45644315 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -16073 50840769 50876891 45691497 45655375 NC_060940.1 CM039049.1 99.85 True indel: stretch of mismatches 50836371 50840768 45695895 45691498 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = -18264 50848603 50854634 45701926 45695896 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = 12151 50821862 50836451 45716517 45701927 NC_060940.1 CM039049.1 99.88 True relocation, inconsistency = -12223 50830252 50834084 45720350 45716518 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = 123819 50692454 50706432 45734215 45720351 NC_060940.1 CM039049.1 98.72 True relocation, inconsistency = -58068 50747595 50750521 45737142 45734216 NC_060940.1 CM039049.1 98.33 True indel: stretch of mismatches 50735307 50747574 45749430 45737163 NC_060940.1 CM039049.1 99.93 True indel: stretch of mismatches 50723083 50735306 45761654 45749431 NC_060940.1 CM039049.1 99.91 True relocation, inconsistency = -24448 50742661 50747530 45766524 45761655 NC_060940.1 CM039049.1 99.92 True relocation, scaffold gap is present, inconsistency = 616899 51364630 51367721 45766725 45769816 NC_060940.1 CM039049.1 99.84 True relocation, inconsistency = -64847 51302875 51308831 45769817 45775773 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = 12192 51321024 51339350 45775774 45794103 NC_060940.1 CM039049.1 99.51 True relocation, inconsistency = 499295 51838646 51861960 45794104 45817416 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = -837554 51024407 51025431 45817417 45818441 NC_060940.1 CM039049.1 99.5 True indel: indel (> 5bp) 51025442 51037505 45818442 45830505 NC_060940.1 CM039049.1 99.54 True local misassembly 51039629 51041291 45830506 45832168 NC_060940.1 CM039049.1 99.22 True local misassembly 51041485 51044468 45832169 45835152 NC_060940.1 CM039049.1 99.6 True indel: indel (<= 5bp) 51044469 51049828 45835154 45840513 NC_060940.1 CM039049.1 99.42 True indel: indel (<= 5bp) 51049829 51053256 45840515 45843942 NC_060940.1 CM039049.1 99.47 True indel: indel (> 5bp) 51053306 51054498 45843943 45845135 NC_060940.1 CM039049.1 99.66 True indel: indel (<= 5bp) 51054499 51057846 45845137 45848484 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = 57340 51115187 51125497 45848485 45858795 NC_060940.1 CM039049.1 99.05 True relocation, inconsistency = 317809 51443307 51490950 45858796 45906469 NC_060940.1 CM039049.1 99.74 True local misassembly 51484859 51496292 45906470 45917841 NC_060940.1 CM039049.1 99.25 True relocation, inconsistency = 471036 51967329 51970346 45917842 45920859 NC_060940.1 CM039049.1 98.86 True relocation, inconsistency = -487795 51482552 51494628 45920860 45932913 NC_060940.1 CM039049.1 99.24 True relocation, inconsistency = 481148 51975777 51997351 45932914 45954416 NC_060940.1 CM039049.1 98.82 True relocation, inconsistency = -1168007 50829345 50836451 45954417 45961523 NC_060940.1 CM039049.1 99.47 True relocation, inconsistency = 697662 51534961 51540065 45962371 45967475 NC_060940.1 CM039049.1 99.47 True local misassembly 51534961 51540065 45968483 45973587 NC_060940.1 CM039049.1 99.51 True relocation, inconsistency = 174601 51715779 51723201 45974700 45982204 NC_060940.1 CM039049.1 98.47 True relocation, inconsistency = -785779 50937423 50939861 45982205 45984643 NC_060940.1 CM039049.1 98.56 True relocation, inconsistency = 568575 51508437 51513954 45984644 45990162 NC_060940.1 CM039049.1 99.73 True relocation, inconsistency = 42666 51556621 51571624 45990163 46005165 NC_060940.1 CM039049.1 99.59 True relocation, inconsistency = 24482 51596107 51603207 46005166 46012266 NC_060940.1 CM039049.1 99.63 True relocation, inconsistency = -58545 51547213 51550214 46014817 46017818 NC_060940.1 CM039049.1 99.72 True indel: stretch of mismatches 51550215 51563435 46017819 46031039 NC_060940.1 CM039049.1 99.58 True relocation, inconsistency = -12661 51550775 51553969 46031040 46034234 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = 46321 51600291 51613095 46034235 46046941 NC_060940.1 CM039049.1 99.06 True indel: stretch of mismatches 51613096 51617640 46046942 46051486 NC_060940.1 CM039049.1 99.99 True relocation, inconsistency = 12224 51629865 51636467 46051487 46058089 NC_060940.1 CM039049.1 99.91 True local misassembly 51646946 51656474 46062456 46071984 NC_060940.1 CM039049.1 99.75 True local misassembly 51662587 51690700 46071985 46100049 NC_060940.1 CM039049.1 99.73 True local misassembly 51696813 51707611 46100050 46110848 NC_060940.1 CM039049.1 99.98 True indel: stretch of mismatches 51707612 51726409 46110849 46129646 NC_060940.1 CM039049.1 99.92 True indel: stretch of mismatches 51726410 51729622 46129647 46132859 NC_060940.1 CM039049.1 99.36 True relocation, inconsistency = -655970 51073653 51080540 46132860 46139718 NC_060940.1 CM039049.1 98.9 True relocation, inconsistency = 721719 51802260 51820884 46139719 46158392 NC_060940.1 CM039049.1 99.65 True relocation, inconsistency = -519781 51301104 51307330 46158393 46164642 NC_060940.1 CM039049.1 98.02 True relocation, inconsistency = 523702 51831033 51837144 46164643 46170728 NC_060940.1 CM039049.1 99.12 True local misassembly 51831033 51849748 46170729 46189417 NC_060940.1 CM039049.1 99.65 True fake: not a misassembly (possible transposable element) 51861960 51865130 46189418 46192588 NC_060940.1 CM039049.1 99.94 True fake: not a misassembly (possible transposable element) 51865354 51877338 46199881 46211865 NC_060940.1 CM039049.1 99.87 True indel: indel (> 5bp) 51877362 51888408 46211866 46222912 NC_060940.1 CM039049.1 99.87 True relocation, inconsistency = 17396 51905942 51962997 46223050 46280052 NC_060940.1 CM039049.1 99.79 True relocation, inconsistency = 38581 52001579 52005724 46280053 46284199 NC_060940.1 CM039049.1 99.64 True relocation, inconsistency = -44436 51961289 51984248 46284200 46307159 NC_060940.1 CM039049.1 99.68 True local misassembly 51986430 51993270 46307160 46314000 NC_060940.1 CM039049.1 99.46 True relocation, inconsistency = -510665 51482606 51497534 46314001 46328866 NC_060940.1 CM039049.1 98.54 True relocation, inconsistency = -12155 51485629 51489207 46329116 46332694 NC_060940.1 CM039049.1 99.22 True relocation, inconsistency = 454138 51943346 51945428 46332695 46334777 NC_060940.1 CM039049.1 99.55 True relocation, inconsistency = -886762 51058667 51076796 46334778 46352927 NC_060940.1 CM039049.1 99.23 True relocation, inconsistency = 882655 51959452 51965307 46352928 46358783 NC_060940.1 CM039049.1 99.62 True relocation, inconsistency = 60274 52025693 52081903 46358895 46415479 NC_060940.1 CM039049.1 99.13 True local misassembly 52079474 52105327 46416738 46442663 NC_060940.1 CM039049.1 99.56 True relocation, inconsistency = -145918 51959410 51965307 46442664 46448561 NC_060940.1 CM039049.1 99.2 True relocation, inconsistency = 133600 52099019 52151784 46448673 46501789 NC_060940.1 CM039049.1 99.24 True local misassembly 52152169 52155275 46501853 46504959 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = -78336 52077309 52097863 46505329 46525859 NC_060940.1 CM039049.1 99.52 True relocation, inconsistency = 57459 52155323 54277851 46525860 48646016 NC_060940.1 CM039049.1 99.85 True local misassembly 54278172 54414630 48646229 48782651 NC_060940.1 CM039049.1 99.71 True local misassembly 54415110 56844765 48783160 51212666 NC_060940.1 CM039049.1 99.75 True indel: indel (> 5bp) 56844967 61560699 51212799 55926236 NC_060940.1 CM039049.1 99.75 True local misassembly 61561249 61562767 55926742 55928258 NC_060940.1 CM039049.1 96.58 True local misassembly 61567269 61568995 55932742 55934468 NC_060940.1 CM039049.1 97.64 True local misassembly 61571354 61571975 55937068 55937689 NC_060940.1 CM039049.1 97.75 True local misassembly 61573055 61574248 55941326 55942509 NC_060940.1 CM039049.1 95.73 True local misassembly 61574957 61576958 55943451 55945456 NC_060940.1 CM039049.1 95.03 True indel: indel (<= 5bp) 61577101 61578914 55945598 55947387 NC_060940.1 CM039049.1 95.54 True local misassembly 61579441 61580065 55947915 55948541 NC_060940.1 CM039049.1 96.01 True local misassembly 61583490 62603947 55952329 56972046 NC_060940.1 CM039049.1 99.73 True local misassembly 62604715 63128331 56972722 57496670 NC_060940.1 CM039049.1 99.72 True local misassembly 63128333 63674975 57497478 58043758 NC_060940.1 CM039049.1 99.73 True indel: indel (> 5bp) 63675067 64381886 58043826 58751096 NC_060940.1 CM039049.1 99.64 True indel: indel (> 5bp) 64382046 66671905 58751263 61048367 NC_060940.1 CM039049.1 99.47 True local misassembly 66672696 67213812 61048693 61589644 NC_060940.1 CM039049.1 99.83 True local misassembly 67214081 68315931 61589789 62691868 NC_060940.1 CM039049.1 99.84 True indel: indel (<= 5bp) 68315992 68941179 62691933 63316974 NC_060940.1 CM039049.1 99.78 True indel: indel (> 5bp) 68941224 69953994 63317001 64329571 NC_060940.1 CM039049.1 99.85 True indel: indel (> 5bp) 69954422 70916863 64330021 65292279 NC_060940.1 CM039049.1 99.75 True local misassembly 70917762 70918335 65293548 65294121 NC_060940.1 CM039049.1 99.3 True local misassembly 70919773 75171126 65295635 69545583 NC_060940.1 CM039049.1 99.83 True local misassembly 75171277 75760285 69545608 70134508 NC_060940.1 CM039049.1 99.86 True local misassembly 75767170 77064567 70134509 71429818 NC_060940.1 CM039049.1 99.65 True indel: indel (> 5bp) 77064707 77876159 71429967 72241323 NC_060940.1 CM039049.1 99.93 True local misassembly 77874440 77875285 72241328 72242173 NC_060940.1 CM039049.1 99.76 True indel: indel (<= 5bp) 77875402 78168088 72242288 72535012 NC_060940.1 CM039049.1 99.88 True local misassembly 78168397 80362627 72535217 74729335 NC_060940.1 CM039049.1 99.82 True relocation, inconsistency = 114319 80476947 81252945 74729336 75508154 NC_060940.1 CM039049.1 99.46 True inversion 81252946 81269505 75524704 75508155 NC_060940.1 CM039049.1 99.66 True inversion 81269506 87828294 75524705 82061575 NC_060940.1 CM039049.1 99.42 True local misassembly 87829381 90996771 82061576 85228227 NC_060940.1 CM039049.1 99.66 True local misassembly 90997200 91221204 85228228 85452178 NC_060940.1 CM039049.1 99.6 True fake: not a misassembly (possible transposable element) 91221220 91222284 85453243 85452179 NC_060940.1 CM039049.1 98.6 True fake: not a misassembly (possible transposable element) 91222305 91470609 85453244 85701458 NC_060940.1 CM039049.1 99.8 True relocation, inconsistency = -10705 91477315 91584346 85718869 85825871 NC_060940.1 CM039049.1 99.55 True indel: indel (> 5bp) 91584598 91718369 85826184 85960017 NC_060940.1 CM039049.1 99.82 True indel: indel (> 5bp) 91718810 92212538 85960452 86454865 NC_060940.1 CM039049.1 99.14 True indel: indel (> 5bp) 92212792 93056533 86455108 87299895 NC_060940.1 CM039049.1 99.52 True local misassembly 93057204 93950229 87300713 88193987 NC_060940.1 CM039049.1 99.58 True indel: indel (<= 5bp) 93950266 93952173 88194026 88195932 NC_060940.1 CM039049.1 98.27 True indel: indel (> 5bp) 93952185 94345093 88195988 88592958 NC_060940.1 CM039049.1 98.36 True local misassembly 94345554 94447139 88594489 88696165 NC_060940.1 CM039049.1 98.9 True indel: indel (> 5bp) 94447166 94986796 88696166 89236375 NC_060940.1 CM039049.1 98.76 True local misassembly 94993198 95702186 89236376 89944843 NC_060940.1 CM039049.1 98.71 True local misassembly 95703196 95708004 89945496 89950304 NC_060940.1 CM039049.1 99.92 True indel: indel (<= 5bp) 95708005 95710739 89950306 89953040 NC_060940.1 CM039049.1 99.85 True indel: indel (<= 5bp) 95711120 95711722 89953422 89954024 NC_060940.1 CM039049.1 99.83 True indel: indel (<= 5bp) 95711725 95714057 89954025 89956357 NC_060940.1 CM039049.1 99.91 True indel: indel (> 5bp) 95714092 95717148 89956451 89959507 NC_060940.1 CM039049.1 99.67 True local misassembly 95718869 95937152 89963669 90181703 NC_060940.1 CM039049.1 99.2 True indel: indel (> 5bp) 95937362 96209046 90181988 90453210 NC_060940.1 CM039049.1 99.28 True CONTIG CM039049.1 90453210 misassembled 50740440 50744317 1 3878 NC_060940.1 JAKCWS010000008.1 99.82 True relocation, inconsistency = -30560 50713758 50726456 3879 16577 NC_060940.1 JAKCWS010000008.1 99.73 True local misassembly 50720345 50723777 16578 20020 NC_060940.1 JAKCWS010000008.1 99.45 True local misassembly 50717666 50719869 20021 22224 NC_060940.1 JAKCWS010000008.1 99.74 True local misassembly 50713758 50724667 22225 33144 NC_060940.1 JAKCWS010000008.1 99.39 True relocation, inconsistency = -11141346 39583322 39583841 33145 33664 NC_060940.1 JAKCWS010000008.1 97.95 True relocation, inconsistency = 10770395 50354342 50366856 33770 46288 NC_060940.1 JAKCWS010000008.1 99.01 True relocation, inconsistency = -1422684 48944174 48947022 46290 49138 NC_060940.1 JAKCWS010000008.1 98.5 True local misassembly 48942069 48947128 49139 54198 NC_060940.1 JAKCWS010000008.1 98.67 True relocation, inconsistency = 87947 49035076 49051754 54199 70884 NC_060940.1 JAKCWS010000008.1 98.21 True relocation, inconsistency = -9462081 39589674 39591962 70885 73196 NC_060940.1 JAKCWS010000008.1 97.9 True relocation, inconsistency = 1836752 41428808 41430802 73290 75284 NC_060940.1 JAKCWS010000008.1 99.3 True indel: indel (<= 5bp) 41431162 41431740 75646 76224 NC_060940.1 JAKCWS010000008.1 99.83 True relocation, inconsistency = 7610130 49041871 49049866 76225 84181 NC_060940.1 JAKCWS010000008.1 97.85 True relocation, inconsistency = -4281196 44768671 44772201 84182 87711 NC_060940.1 JAKCWS010000008.1 98.19 True relocation, inconsistency = 4265640 49037842 49045341 87712 95191 NC_060940.1 JAKCWS010000008.1 99.03 True relocation, inconsistency = 1093440 50138990 50140141 95400 96551 NC_060940.1 JAKCWS010000008.1 98.7 True local misassembly 50140506 50142088 96552 98134 NC_060940.1 JAKCWS010000008.1 99.56 True indel: indel (<= 5bp) 50142089 50145090 98136 101137 NC_060940.1 JAKCWS010000008.1 99.17 True relocation, inconsistency = 277930 50423465 50427952 101582 106254 NC_060940.1 JAKCWS010000008.1 96.33 True local misassembly 50421877 50449429 106255 133771 NC_060940.1 JAKCWS010000008.1 99.66 True local misassembly 50450240 50511403 133772 194950 NC_060940.1 JAKCWS010000008.1 99.66 True local misassembly 50505349 50510648 194951 200255 NC_060940.1 JAKCWS010000008.1 99.62 True relocation, inconsistency = -14100 50496549 50525219 200256 228931 NC_060940.1 JAKCWS010000008.1 99.88 True relocation, inconsistency = 142563 50667783 50709335 228932 270484 NC_060940.1 JAKCWS010000008.1 99.89 True relocation, inconsistency = -1255454 49453882 49463112 270485 279791 NC_060940.1 JAKCWS010000008.1 98.09 True relocation, inconsistency = -8702387 40760726 40768872 279792 287961 NC_060940.1 JAKCWS010000008.1 97.51 True relocation, inconsistency = 10785585 51554458 51558813 287962 292317 NC_060940.1 JAKCWS010000008.1 99.6 True relocation, inconsistency = 12799 51571613 51574688 292318 295416 NC_060940.1 JAKCWS010000008.1 98.75 True relocation, inconsistency = -860581 50714108 50726456 295417 307762 NC_060940.1 JAKCWS010000008.1 99.63 True indel: stretch of mismatches 50726457 50732090 307763 313396 NC_060940.1 JAKCWS010000008.1 99.83 True local misassembly 50725979 50735350 313397 322768 NC_060940.1 JAKCWS010000008.1 99.83 True local misassembly 50741463 50744314 322769 325620 NC_060940.1 JAKCWS010000008.1 99.81 True relocation, inconsistency = -18336 50725979 50735306 325621 334948 NC_060940.1 JAKCWS010000008.1 99.87 True indel: stretch of mismatches 50735307 50747530 334949 347123 NC_060940.1 JAKCWS010000008.1 99.51 True relocation, inconsistency = -12224 50735307 50749337 347124 361154 NC_060940.1 JAKCWS010000008.1 99.97 True fake: not a misassembly (possible transposable element) 51652687 51656103 361155 364568 NC_060940.1 JAKCWS010000008.1 99.76 True fake: not a misassembly (possible transposable element) 50747595 50750514 365521 368440 NC_060940.1 JAKCWS010000008.1 98.74 True relocation, inconsistency = 433500 51184015 51194563 368441 378986 NC_060940.1 JAKCWS010000008.1 99.43 True fake: not a misassembly (possible transposable element) 51580316 51585232 378987 383903 NC_060940.1 JAKCWS010000008.1 99.23 True fake: not a misassembly (possible transposable element) 51193369 51196579 383904 387114 NC_060940.1 JAKCWS010000008.1 98.89 True relocation, inconsistency = -445678 50750902 50756442 387115 392655 NC_060940.1 JAKCWS010000008.1 99.44 True local misassembly 50750902 50783134 392656 424837 NC_060940.1 JAKCWS010000008.1 99.61 True relocation, inconsistency = 24447 50807582 50815766 424838 433019 NC_060940.1 JAKCWS010000008.1 99.46 True relocation, inconsistency = -12224 50803543 50818116 433020 447593 NC_060940.1 JAKCWS010000008.1 99.94 True relocation, inconsistency = 433919 51252036 51254795 447594 450352 NC_060940.1 JAKCWS010000008.1 99.62 True relocation, inconsistency = -421697 50833099 50840768 450353 458022 NC_060940.1 JAKCWS010000008.1 99.85 True indel: stretch of mismatches 50840769 50868264 458023 485446 NC_060940.1 JAKCWS010000008.1 99.6 True relocation, inconsistency = 12224 50880489 50883003 485447 487961 NC_060940.1 JAKCWS010000008.1 99.77 True relocation, inconsistency = 28297 50911475 50947414 488136 524075 NC_060940.1 JAKCWS010000008.1 99.9 True relocation, inconsistency = 19919 50967334 50986787 524076 543529 NC_060940.1 JAKCWS010000008.1 99.86 True fake: not a misassembly (possible transposable element) 51005160 51007218 543530 545588 NC_060940.1 JAKCWS010000008.1 99.7 True fake: not a misassembly (possible transposable element) 50982736 51010009 545589 572863 NC_060940.1 JAKCWS010000008.1 99.89 True indel: stretch of mismatches 51010010 51025476 572864 588330 NC_060940.1 JAKCWS010000008.1 99.79 True local misassembly 51031589 51048082 588331 605014 NC_060940.1 JAKCWS010000008.1 98.55 True relocation, inconsistency = 26833 51074917 51083874 605016 613924 NC_060940.1 JAKCWS010000008.1 99.23 True relocation, inconsistency = 19730 51103605 51140945 613925 651360 NC_060940.1 JAKCWS010000008.1 99.65 True local misassembly 51140218 51142205 651367 653374 NC_060940.1 JAKCWS010000008.1 99.61 True relocation, inconsistency = 833571 51975777 51997351 653375 674939 NC_060940.1 JAKCWS010000008.1 99.12 True relocation, inconsistency = -417906 51579446 51583867 674940 679387 NC_060940.1 JAKCWS010000008.1 99.38 True relocation, inconsistency = -429264 51154604 51158742 679388 683526 NC_060940.1 JAKCWS010000008.1 99.52 True relocation, inconsistency = 357980 51516723 51525072 683527 691886 NC_060940.1 JAKCWS010000008.1 99.56 True relocation, inconsistency = 70759 51595832 51605357 691887 701422 NC_060940.1 JAKCWS010000008.1 99.57 True relocation, inconsistency = -285452 51333173 51340406 714690 721926 NC_060940.1 JAKCWS010000008.1 99.23 True relocation, inconsistency = -624006 50716971 50725069 722497 730595 NC_060940.1 JAKCWS010000008.1 99.74 True relocation, inconsistency = 743399 51470097 51477817 732224 739939 NC_060940.1 JAKCWS010000008.1 99.35 True local misassembly 51471706 51477675 739940 745909 NC_060940.1 JAKCWS010000008.1 99.44 True relocation, inconsistency = -3022058 48455618 48463680 745910 753995 NC_060940.1 JAKCWS010000008.1 99.16 True relocation, inconsistency = 2768203 51232930 51239803 755042 761951 NC_060940.1 JAKCWS010000008.1 99.09 True fake: not a misassembly (possible transposable element) 51481494 51482875 761952 763333 NC_060940.1 JAKCWS010000008.1 99.08 True fake: not a misassembly (possible transposable element) 51244202 51265273 766350 787421 NC_060940.1 JAKCWS010000008.1 99.86 True local misassembly 51270633 51275764 787422 792553 NC_060940.1 JAKCWS010000008.1 99.67 True local misassembly 51275752 51281434 793245 798927 NC_060940.1 JAKCWS010000008.1 99.61 True relocation, inconsistency = 549497 51831033 51838645 799029 806615 NC_060940.1 JAKCWS010000008.1 99.32 True relocation, inconsistency = -863706 50974940 50988876 806616 820504 NC_060940.1 JAKCWS010000008.1 99.47 True relocation, inconsistency = 358261 51347138 51375587 820505 848954 NC_060940.1 JAKCWS010000008.1 99.83 True relocation, inconsistency = -70887 51304701 51308831 848955 853085 NC_060940.1 JAKCWS010000008.1 99.56 True relocation, inconsistency = 12192 51321024 51333697 853086 865759 NC_060940.1 JAKCWS010000008.1 99.59 True CONTIG JAKCWS010000008.1 865759 misassembled 36596677 36597386 773 64 NC_060940.1 JAKCWS010000009.1 99.77 True relocation, inconsistency = -74365 36664441 36671041 7364 774 NC_060940.1 JAKCWS010000009.1 99.24 True relocation, inconsistency = 65871 36596677 36597851 9257 8083 NC_060940.1 JAKCWS010000009.1 99.81 True relocation, inconsistency = -74365 36664441 36671041 15849 9258 NC_060940.1 JAKCWS010000009.1 99.26 True relocation, inconsistency = 310847 36347695 36352879 21743 16564 NC_060940.1 JAKCWS010000009.1 99.5 True relocation, inconsistency = 119199 36221700 36228417 28538 21822 NC_060940.1 JAKCWS010000009.1 99.49 True relocation, inconsistency = -82186 36301238 36303885 31186 28539 NC_060940.1 JAKCWS010000009.1 99.47 True relocation, inconsistency = 16978 36276039 36281998 39408 33448 NC_060940.1 JAKCWS010000009.1 99.63 True relocation, inconsistency = -295554 36564523 36571592 46478 39409 NC_060940.1 JAKCWS010000009.1 99.77 True local misassembly 36564523 36569619 51575 46479 NC_060940.1 JAKCWS010000009.1 99.8 True relocation, inconsistency = -218272 36775995 36776509 58375 57861 NC_060940.1 JAKCWS010000009.1 99.4 True relocation, inconsistency = 98058 36667760 36677936 68548 58376 NC_060940.1 JAKCWS010000009.1 99.58 True relocation, inconsistency = -146230 36799138 36813989 83401 68549 NC_060940.1 JAKCWS010000009.1 99.22 True local misassembly 36790350 36796426 89479 83402 NC_060940.1 JAKCWS010000009.1 99.32 True relocation, inconsistency = 831868 35948983 35958481 98972 89480 NC_060940.1 JAKCWS010000009.1 98.82 True relocation, inconsistency = -427756 36371405 36376738 104306 98973 NC_060940.1 JAKCWS010000009.1 99.72 True relocation, inconsistency = -233767 36589437 36605171 120040 104307 NC_060940.1 JAKCWS010000009.1 99.82 True local misassembly 36591667 36596232 124600 120041 NC_060940.1 JAKCWS010000009.1 99.63 True relocation, inconsistency = 298969 36285971 36292571 131323 124727 NC_060940.1 JAKCWS010000009.1 99.22 True relocation, inconsistency = -288768 36565148 36574738 140914 131324 NC_060940.1 JAKCWS010000009.1 99.9 True relocation, inconsistency = -402578 36962948 36967725 145694 140915 NC_060940.1 JAKCWS010000009.1 99.49 True relocation, inconsistency = 448793 36508478 36513574 151371 146275 NC_060940.1 JAKCWS010000009.1 99.76 True relocation, inconsistency = -169501 36666150 36677978 163208 151372 NC_060940.1 JAKCWS010000009.1 99.54 True relocation, inconsistency = 206885 36452449 36459264 170024 163209 NC_060940.1 JAKCWS010000009.1 99.78 True relocation, inconsistency = 15629 36434984 36436819 171860 170025 NC_060940.1 JAKCWS010000009.1 99.75 True relocation, inconsistency = -154945 36583234 36589928 178551 171861 NC_060940.1 JAKCWS010000009.1 99.73 True relocation, inconsistency = 8495 36567943 36574738 185342 178552 NC_060940.1 JAKCWS010000009.1 99.71 True local misassembly 36565148 36574738 194933 185343 NC_060940.1 JAKCWS010000009.1 99.84 True relocation, inconsistency = 333933 36215816 36231098 210340 195050 NC_060940.1 JAKCWS010000009.1 99.65 True relocation, inconsistency = -15283 36206243 36231098 235204 210341 NC_060940.1 JAKCWS010000009.1 99.59 True relocation, inconsistency = -56045 36249585 36262287 247913 235205 NC_060940.1 JAKCWS010000009.1 99.13 True local misassembly 36239447 36242792 251259 247914 NC_060940.1 JAKCWS010000009.1 99.56 True relocation, inconsistency = -440231 36671227 36679677 259718 251260 NC_060940.1 JAKCWS010000009.1 99.35 True relocation, inconsistency = 363153 36301249 36307849 266550 259943 NC_060940.1 JAKCWS010000009.1 99.18 True relocation, inconsistency = -212326 36506815 36513574 273306 266551 NC_060940.1 JAKCWS010000009.1 99.53 True relocation, inconsistency = 352252 36152778 36154562 275087 273307 NC_060940.1 JAKCWS010000009.1 99.37 True relocation, inconsistency = -362446 36505058 36515223 285249 275088 NC_060940.1 JAKCWS010000009.1 99.51 True local misassembly 36505058 36511853 292037 285250 NC_060940.1 JAKCWS010000009.1 99.57 True relocation, inconsistency = -169509 36673451 36674566 293153 292038 NC_060940.1 JAKCWS010000009.1 99.38 True relocation, inconsistency = 188198 36479839 36485252 298555 293154 NC_060940.1 JAKCWS010000009.1 99.46 True relocation, inconsistency = -54368 36532634 36534206 300128 298556 NC_060940.1 JAKCWS010000009.1 99.54 True relocation, inconsistency = 661483 35869806 35871150 301477 300129 NC_060940.1 JAKCWS010000009.1 96.97 True relocation, inconsistency = -391079 36252478 36260884 309884 301478 NC_060940.1 JAKCWS010000009.1 98.54 True relocation, inconsistency = 183358 36054829 36069119 324187 309885 NC_060940.1 JAKCWS010000009.1 98.67 True relocation, inconsistency = -40680 36076403 36095508 343306 324188 NC_060940.1 JAKCWS010000009.1 98.93 True relocation, inconsistency = -33233 36098427 36109635 354522 343307 NC_060940.1 JAKCWS010000009.1 99.1 True relocation, inconsistency = -10172 36107351 36108598 355457 354523 NC_060940.1 JAKCWS010000009.1 95.77 True local misassembly 36098134 36110716 368043 355458 NC_060940.1 JAKCWS010000009.1 99.1 True relocation, inconsistency = 152324 35943256 35945809 370595 368044 NC_060940.1 JAKCWS010000009.1 98.86 True relocation, inconsistency = -319419 36253189 36262581 380072 370689 NC_060940.1 JAKCWS010000009.1 98.84 True relocation, inconsistency = 196914 36036083 36056274 400272 380073 NC_060940.1 JAKCWS010000009.1 98.69 True relocation, inconsistency = -37297 36068522 36073379 405127 400273 NC_060940.1 JAKCWS010000009.1 98.79 True relocation, inconsistency = -50198 36100670 36118719 423164 405128 NC_060940.1 JAKCWS010000009.1 98.96 True local misassembly 36102327 36104061 424899 423165 NC_060940.1 JAKCWS010000009.1 99.14 True relocation, inconsistency = 23056 36060655 36079270 443534 424900 NC_060940.1 JAKCWS010000009.1 98.85 True local misassembly 36046556 36062323 459350 443561 NC_060940.1 JAKCWS010000009.1 98.99 True local misassembly 36034190 36041467 466627 459351 NC_060940.1 JAKCWS010000009.1 99.04 True relocation, inconsistency = -16957 36028135 36051146 489647 466628 NC_060940.1 JAKCWS010000009.1 99.1 True local misassembly 36024509 36031528 497017 489648 NC_060940.1 JAKCWS010000009.1 97.37 True relocation, inconsistency = -71203 36086042 36095508 506686 497221 NC_060940.1 JAKCWS010000009.1 98.97 True relocation, inconsistency = 127536 35943256 35958505 521924 506687 NC_060940.1 JAKCWS010000009.1 98.87 True relocation, inconsistency = 43085 35893635 35900170 528453 521925 NC_060940.1 JAKCWS010000009.1 98.81 True relocation, inconsistency = -70936 35955121 35964570 537898 528454 NC_060940.1 JAKCWS010000009.1 98.99 True local misassembly 35937270 35951722 552016 537899 NC_060940.1 JAKCWS010000009.1 96.67 True relocation, inconsistency = -372384 36306900 36308454 554766 553216 NC_060940.1 JAKCWS010000009.1 98.73 True relocation, inconsistency = -154569 36451231 36461468 565000 554767 NC_060940.1 JAKCWS010000009.1 99.63 True relocation, inconsistency = -71356 36517404 36522586 570179 565001 NC_060940.1 JAKCWS010000009.1 99.59 True relocation, inconsistency = 287720 36222892 36229683 576975 570180 NC_060940.1 JAKCWS010000009.1 99.63 True local misassembly 36224106 36229683 582553 576976 NC_060940.1 JAKCWS010000009.1 99.59 True local misassembly 36204062 36230901 609393 582554 NC_060940.1 JAKCWS010000009.1 99.57 True relocation, inconsistency = -252031 36449532 36456092 615954 609394 NC_060940.1 JAKCWS010000009.1 99.46 True relocation, inconsistency = 112456 36332526 36337055 620510 615975 NC_060940.1 JAKCWS010000009.1 99.09 True local misassembly 36335492 36337616 622637 620511 NC_060940.1 JAKCWS010000009.1 99.14 True local misassembly 36333275 36338887 628252 622638 NC_060940.1 JAKCWS010000009.1 99.23 True local misassembly 36323033 36340064 645280 628253 NC_060940.1 JAKCWS010000009.1 99.41 True local misassembly 36323563 36326430 648148 645281 NC_060940.1 JAKCWS010000009.1 99.2 True relocation, inconsistency = 56362 36248741 36267200 666614 648149 NC_060940.1 JAKCWS010000009.1 99.11 True relocation, inconsistency = -68249 36314873 36316989 668731 666615 NC_060940.1 JAKCWS010000009.1 99.69 True relocation, inconsistency = 179662 36133290 36134988 670652 668954 NC_060940.1 JAKCWS010000009.1 99.08 True local misassembly 36126952 36134988 678684 670653 NC_060940.1 JAKCWS010000009.1 99.66 True relocation, inconsistency = 68177 36046141 36058768 691330 678691 NC_060940.1 JAKCWS010000009.1 98.92 True indel: stretch of mismatches 36043579 36046140 693892 691331 NC_060940.1 JAKCWS010000009.1 98.92 True relocation, inconsistency = -75619 36109140 36119197 703950 693893 NC_060940.1 JAKCWS010000009.1 99.45 True relocation, inconsistency = -150139 36254306 36259187 708920 704042 NC_060940.1 JAKCWS010000009.1 97.94 True relocation, inconsistency = 136897 36109140 36117408 717190 708921 NC_060940.1 JAKCWS010000009.1 99.67 True relocation, inconsistency = -20381 36123424 36129080 723279 717631 NC_060940.1 JAKCWS010000009.1 98.63 True relocation, inconsistency = 219158 35893417 35904265 734125 723280 NC_060940.1 JAKCWS010000009.1 99.14 True local misassembly 35894634 35896812 736305 734126 NC_060940.1 JAKCWS010000009.1 99.24 True relocation, inconsistency = -234447 36119851 36129080 745524 736306 NC_060940.1 JAKCWS010000009.1 98.64 True relocation, inconsistency = -1557302 37667701 37677152 754970 745525 NC_060940.1 JAKCWS010000009.1 99.08 True relocation, inconsistency = -25472 37683329 37693172 764815 754971 NC_060940.1 JAKCWS010000009.1 98.74 True relocation, inconsistency = 1382721 36286443 36300607 778976 764816 NC_060940.1 JAKCWS010000009.1 98.2 True relocation, inconsistency = 326884 35947599 35959558 790913 778977 NC_060940.1 JAKCWS010000009.1 98.91 True relocation, inconsistency = -106890 36037557 36054488 807856 790914 NC_060940.1 JAKCWS010000009.1 98.71 True relocation, inconsistency = -22040 36053273 36059596 814182 807857 NC_060940.1 JAKCWS010000009.1 98.54 True relocation, inconsistency = -65447 36101967 36118719 830931 814183 NC_060940.1 JAKCWS010000009.1 98.64 True local misassembly 36100438 36107052 837546 830932 NC_060940.1 JAKCWS010000009.1 99.01 True CONTIG JAKCWS010000009.1 837549 misassembled 50735307 50747574 395 12662 NC_060940.1 JAKCWS010000010.1 99.92 True indel: stretch of mismatches 50747595 50750521 12683 15609 NC_060940.1 JAKCWS010000010.1 98.5 True relocation, inconsistency = -58068 50692454 50706432 15610 29484 NC_060940.1 JAKCWS010000010.1 98.65 True relocation, inconsistency = 105484 50811917 50815749 29485 33317 NC_060940.1 JAKCWS010000010.1 99.48 True relocation, inconsistency = -12224 50803526 50818116 33318 47908 NC_060940.1 JAKCWS010000010.1 99.84 True relocation, inconsistency = 547915 51366032 51368614 47909 50563 NC_060940.1 JAKCWS010000010.1 98.35 True relocation, inconsistency = -535620 50833099 50840768 50668 58337 NC_060940.1 JAKCWS010000010.1 99.89 True indel: stretch of mismatches 50840769 50883003 58338 100571 NC_060940.1 JAKCWS010000010.1 99.9 True relocation, inconsistency = -22185 50860993 50865766 100746 105519 NC_060940.1 JAKCWS010000010.1 99.84 True local misassembly 50871879 50944705 105520 178274 NC_060940.1 JAKCWS010000010.1 99.82 True local misassembly 50938594 50941794 178275 181475 NC_060940.1 JAKCWS010000010.1 99.86 True relocation, inconsistency = 19919 50961714 50977413 181476 197175 NC_060940.1 JAKCWS010000010.1 99.88 True indel: stretch of mismatches 50977414 50984718 197176 204480 NC_060940.1 JAKCWS010000010.1 99.86 True relocation, inconsistency = 398660 51383572 51397610 204674 218771 NC_060940.1 JAKCWS010000010.1 99.23 True local misassembly 51404366 51405246 218803 219732 NC_060940.1 JAKCWS010000010.1 98.39 True relocation, inconsistency = -10137416 41267831 41280031 219733 231926 NC_060940.1 JAKCWS010000010.1 99.59 True relocation, inconsistency = 9238872 50518904 50540237 231927 253338 NC_060940.1 JAKCWS010000010.1 99.33 True fake: not a misassembly (possible transposable element) 41345655 41348299 253339 256033 NC_060940.1 JAKCWS010000010.1 97.64 True fake: not a misassembly (possible transposable element) 50536801 50555970 256034 275213 NC_060940.1 JAKCWS010000010.1 99.34 True relocation, inconsistency = -1500983 49054988 49062314 275214 282524 NC_060940.1 JAKCWS010000010.1 98.75 True relocation, inconsistency = 1487585 50549900 50583846 282525 316384 NC_060940.1 JAKCWS010000010.1 99.35 True local misassembly 50578396 50579510 316385 317499 NC_060940.1 JAKCWS010000010.1 98.58 True relocation, inconsistency = -200573 50378938 50388644 317500 327406 NC_060940.1 JAKCWS010000010.1 96.67 True relocation, inconsistency = -8918414 41470557 41471086 327733 328262 NC_060940.1 JAKCWS010000010.1 98.3 True relocation, inconsistency = -1734709 39736882 39743388 328767 335290 NC_060940.1 JAKCWS010000010.1 98.62 True relocation, inconsistency = -81634 39661755 39666481 335291 340017 NC_060940.1 JAKCWS010000010.1 98.97 True relocation, inconsistency = 8957530 48624012 48629278 340018 345209 NC_060940.1 JAKCWS010000010.1 97.74 True relocation, inconsistency = -334126 48295300 48302159 345357 352205 NC_060940.1 JAKCWS010000010.1 98.97 True relocation, inconsistency = 2856554 51158714 51164217 352206 357699 NC_060940.1 JAKCWS010000010.1 99.09 True relocation, inconsistency = -5575843 45588375 45590521 357700 359846 NC_060940.1 JAKCWS010000010.1 97.85 True relocation, inconsistency = 4990757 50582258 50591204 360826 369769 NC_060940.1 JAKCWS010000010.1 99.01 True relocation, inconsistency = -12177 50579028 50607894 369770 398620 NC_060940.1 JAKCWS010000010.1 99.3 True relocation, inconsistency = -5965490 44642405 44644988 398621 401204 NC_060940.1 JAKCWS010000010.1 98.93 True relocation, inconsistency = 5937270 50582259 50588682 401205 407632 NC_060940.1 JAKCWS010000010.1 98.99 True local misassembly 50594772 50607894 407633 420779 NC_060940.1 JAKCWS010000010.1 99.13 True relocation, inconsistency = -9744156 40863739 40867586 420780 424611 NC_060940.1 JAKCWS010000010.1 97.95 True relocation, inconsistency = 9710660 50579028 50594311 425393 440677 NC_060940.1 JAKCWS010000010.1 99.49 True local misassembly 50588223 50626173 440678 478627 NC_060940.1 JAKCWS010000010.1 99.87 True local misassembly 50628750 50636032 478628 485910 NC_060940.1 JAKCWS010000010.1 99.92 True relocation, inconsistency = 7693 50643726 50650597 485911 492782 NC_060940.1 JAKCWS010000010.1 99.9 True indel: indel (> 5bp) 50650598 50668684 492832 510918 NC_060940.1 JAKCWS010000010.1 99.78 True relocation, inconsistency = -380484 50288201 50303327 510919 526050 NC_060940.1 JAKCWS010000010.1 99.26 True relocation, inconsistency = -6082018 44222204 44223425 526945 528166 NC_060940.1 JAKCWS010000010.1 99.11 True relocation, inconsistency = 5794443 50017869 50023391 528167 534132 NC_060940.1 JAKCWS010000010.1 96.18 True relocation, inconsistency = 643005 50666397 50709341 534133 577126 NC_060940.1 JAKCWS010000010.1 99.79 True relocation, inconsistency = -1138033 49571309 49579185 577127 584905 NC_060940.1 JAKCWS010000010.1 98.02 True relocation, inconsistency = 1977732 51556918 51558845 584906 586833 NC_060940.1 JAKCWS010000010.1 99.59 True relocation, inconsistency = 15340 51574186 51576710 586834 589358 NC_060940.1 JAKCWS010000010.1 98.97 True relocation, inconsistency = -867798 50708913 50713002 589359 593448 NC_060940.1 JAKCWS010000010.1 99.44 True relocation, inconsistency = 858610 51571613 51578256 593449 600102 NC_060940.1 JAKCWS010000010.1 98.79 True relocation, inconsistency = -860591 50717666 50728059 600103 610519 NC_060940.1 JAKCWS010000010.1 99.52 True relocation, inconsistency = 839129 51567189 51568824 610520 612155 NC_060940.1 JAKCWS010000010.1 98.93 True relocation, inconsistency = -1034039 50534786 50540501 612156 617902 NC_060940.1 JAKCWS010000010.1 97.98 True relocation, inconsistency = -965606 49575598 49585305 618605 628214 NC_060940.1 JAKCWS010000010.1 98.03 True relocation, inconsistency = 1971620 51556926 51558845 628215 630134 NC_060940.1 JAKCWS010000010.1 99.57 True relocation, inconsistency = 9188 51568034 51570558 630135 632659 NC_060940.1 JAKCWS010000010.1 99.22 True fake: not a misassembly (possible transposable element) 50708913 50713002 632660 636749 NC_060940.1 JAKCWS010000010.1 99.44 True fake: not a misassembly (possible transposable element) 51571613 51577501 636750 642658 NC_060940.1 JAKCWS010000010.1 98.79 True relocation, inconsistency = 18330 51595832 51605357 642659 652194 NC_060940.1 JAKCWS010000010.1 99.59 True relocation, inconsistency = -33620 51571738 51578775 652195 659242 NC_060940.1 JAKCWS010000010.1 98.83 True relocation, inconsistency = -1040232 50538544 50540225 659243 660927 NC_060940.1 JAKCWS010000010.1 98.04 True relocation, inconsistency = 173532 50713758 50726456 660928 673626 NC_060940.1 JAKCWS010000010.1 99.92 True local misassembly 50732569 50735350 673627 676408 NC_060940.1 JAKCWS010000010.1 99.85 True local misassembly 50741621 50744314 676567 679260 NC_060940.1 JAKCWS010000010.1 99.71 True relocation, inconsistency = -18336 50725979 50735306 679261 688588 NC_060940.1 JAKCWS010000010.1 99.87 True indel: stretch of mismatches 50735307 50747574 688589 700856 NC_060940.1 JAKCWS010000010.1 99.92 True relocation, inconsistency = -24448 50723127 50732588 700857 710318 NC_060940.1 JAKCWS010000010.1 99.89 True CONTIG JAKCWS010000010.1 710318 misassembled 37397208 37408319 11111 1 NC_060940.1 JAKCWS010000011.1 99.74 True relocation, inconsistency = -16644 37412920 37413851 12043 11112 NC_060940.1 JAKCWS010000011.1 99.48 True relocation, inconsistency = 116203 37290789 37296716 17971 12044 NC_060940.1 JAKCWS010000011.1 99.76 True relocation, inconsistency = 171929 37117580 37118859 19251 17972 NC_060940.1 JAKCWS010000011.1 99.42 True relocation, inconsistency = -135237 37242633 37251891 29435 20177 NC_060940.1 JAKCWS010000011.1 99.71 True relocation, inconsistency = 13592 37224678 37229040 33799 29436 NC_060940.1 JAKCWS010000011.1 99.79 True relocation, inconsistency = -32280 37249300 37256957 41457 33800 NC_060940.1 JAKCWS010000011.1 99.76 True indel: stretch of mismatches 37246052 37249299 44705 41458 NC_060940.1 JAKCWS010000011.1 99.69 True local misassembly 37246341 37251148 49513 44706 NC_060940.1 JAKCWS010000011.1 99.66 True relocation, inconsistency = 33979 37203549 37212361 58328 49514 NC_060940.1 JAKCWS010000011.1 99.77 True indel: stretch of mismatches 37197928 37203548 63949 58329 NC_060940.1 JAKCWS010000011.1 99.86 True relocation, inconsistency = 96503 37100163 37101424 65211 63950 NC_060940.1 JAKCWS010000011.1 99.84 True relocation, inconsistency = -39077 37130832 37139239 73619 65212 NC_060940.1 JAKCWS010000011.1 99.77 True fake: not a misassembly (possible transposable element) 37186905 37191995 78710 73620 NC_060940.1 JAKCWS010000011.1 99.83 True fake: not a misassembly (possible transposable element) 37110206 37125467 94585 79324 NC_060940.1 JAKCWS010000011.1 99.61 True local misassembly 37115282 37117001 96305 94586 NC_060940.1 JAKCWS010000011.1 99.54 True relocation, inconsistency = -8495 37113658 37123776 106424 96306 NC_060940.1 JAKCWS010000011.1 99.54 True relocation, inconsistency = -35339 37145637 37148996 109784 106425 NC_060940.1 JAKCWS010000011.1 99.81 True relocation, inconsistency = -86646 37223935 37230462 118133 111605 NC_060940.1 JAKCWS010000011.1 99.6 True relocation, inconsistency = 104656 37110206 37119191 127206 118221 NC_060940.1 JAKCWS010000011.1 99.63 True relocation, inconsistency = -15291 37110998 37125467 141705 127236 NC_060940.1 JAKCWS010000011.1 99.61 True local misassembly 37110206 37117488 149293 142011 NC_060940.1 JAKCWS010000011.1 99.71 True local misassembly 37103994 37112391 158903 150506 NC_060940.1 JAKCWS010000011.1 99.81 True relocation, inconsistency = -89707 37185612 37193456 166992 159148 NC_060940.1 JAKCWS010000011.1 99.95 True relocation, inconsistency = 16650 37162438 37168961 173516 166993 NC_060940.1 JAKCWS010000011.1 99.77 True relocation, inconsistency = 38737 37113604 37123700 183613 173517 NC_060940.1 JAKCWS010000011.1 99.6 True relocation, inconsistency = 55723 37051660 37057880 189834 183614 NC_060940.1 JAKCWS010000011.1 99.67 True relocation, inconsistency = 38736 37005184 37012923 197572 189835 NC_060940.1 JAKCWS010000011.1 99.24 True relocation, inconsistency = -19709 37008510 37020161 213956 202304 NC_060940.1 JAKCWS010000011.1 99.58 True local misassembly 37007932 37011907 217932 213957 NC_060940.1 JAKCWS010000011.1 99.56 True relocation, inconsistency = 8155 36989627 36999776 228084 217933 NC_060940.1 JAKCWS010000011.1 99.64 True indel: stretch of mismatches 36988719 36989626 228990 228085 NC_060940.1 JAKCWS010000011.1 99.52 True relocation, inconsistency = -318712 37303111 37307430 233310 228991 NC_060940.1 JAKCWS010000011.1 99.65 True relocation, inconsistency = 328564 36967664 36974546 240193 233311 NC_060940.1 JAKCWS010000011.1 99.88 True relocation, inconsistency = 627506 36332527 36340064 247826 240287 NC_060940.1 JAKCWS010000011.1 99.3 True relocation, inconsistency = -637694 36960444 36970220 257607 247827 NC_060940.1 JAKCWS010000011.1 99.58 True local misassembly 36958336 36962138 261410 257608 NC_060940.1 JAKCWS010000011.1 99.66 True relocation, inconsistency = -11885 36964187 36970220 267444 261411 NC_060940.1 JAKCWS010000011.1 99.59 True local misassembly 36951720 36965885 281608 267445 NC_060940.1 JAKCWS010000011.1 99.67 True local misassembly 36942967 36955453 294093 281609 NC_060940.1 JAKCWS010000011.1 99.58 True relocation, inconsistency = -8495 36930961 36951461 314589 294094 NC_060940.1 JAKCWS010000011.1 99.4 True relocation, inconsistency = 99428 36821055 36831532 325066 314590 NC_060940.1 JAKCWS010000011.1 99.57 True relocation, inconsistency = -30576 36847648 36851630 329053 325067 NC_060940.1 JAKCWS010000011.1 99.33 True relocation, inconsistency = -82440 36913719 36930087 345416 329054 NC_060940.1 JAKCWS010000011.1 99.66 True relocation, inconsistency = 82442 36822219 36831276 354471 345417 NC_060940.1 JAKCWS010000011.1 99.25 True relocation, inconsistency = -78038 36895814 36900222 358915 354506 NC_060940.1 JAKCWS010000011.1 99.33 True local misassembly 36878901 36900222 380240 358916 NC_060940.1 JAKCWS010000011.1 99.4 True local misassembly 36865344 36883307 398218 380241 NC_060940.1 JAKCWS010000011.1 99.33 True fake: not a misassembly (possible transposable element) 36941704 36948150 404656 398219 NC_060940.1 JAKCWS010000011.1 99.43 True fake: not a misassembly (possible transposable element) 36838045 36852463 419077 404657 NC_060940.1 JAKCWS010000011.1 99.47 True relocation, inconsistency = -72592 36903590 36910406 426123 419308 NC_060940.1 JAKCWS010000011.1 99.64 True relocation, inconsistency = 94342 36780495 36809247 454886 426124 NC_060940.1 JAKCWS010000011.1 99.53 True relocation, inconsistency = -129607 36906330 36910101 458658 454887 NC_060940.1 JAKCWS010000011.1 99.45 True relocation, inconsistency = 201890 36699355 36704439 463742 458659 NC_060940.1 JAKCWS010000011.1 99.28 True relocation, inconsistency = -211052 36901988 36910406 472161 463743 NC_060940.1 JAKCWS010000011.1 99.73 True relocation, inconsistency = 241929 36647516 36660058 484708 472162 NC_060940.1 JAKCWS010000011.1 99.68 True relocation, inconsistency = -161489 36792021 36809004 501691 484709 NC_060940.1 JAKCWS010000011.1 99.34 True relocation, inconsistency = 135717 36641403 36656303 516595 501692 NC_060940.1 JAKCWS010000011.1 99.55 True relocation, inconsistency = 25814 36609745 36613223 522439 518961 NC_060940.1 JAKCWS010000011.1 99.74 True relocation, inconsistency = 170236 36432325 36439508 529623 522440 NC_060940.1 JAKCWS010000011.1 99.9 True local misassembly 36434412 36437421 532633 529624 NC_060940.1 JAKCWS010000011.1 99.86 True relocation, inconsistency = -163440 36591667 36597851 538813 532634 NC_060940.1 JAKCWS010000011.1 99.81 True relocation, inconsistency = -82855 36665259 36671041 548071 542294 NC_060940.1 JAKCWS010000011.1 99.26 True relocation, inconsistency = 441934 36214912 36223324 556473 548072 NC_060940.1 JAKCWS010000011.1 99.45 True relocation, inconsistency = -258829 36472766 36473662 557448 556552 NC_060940.1 JAKCWS010000011.1 99.31 True relocation, inconsistency = 48246 36415091 36424519 566879 557449 NC_060940.1 JAKCWS010000011.1 99.66 True fake: not a misassembly (possible transposable element) 36776706 36777778 567952 566880 NC_060940.1 JAKCWS010000011.1 99.57 True fake: not a misassembly (possible transposable element) 36406301 36409698 572611 569214 NC_060940.1 JAKCWS010000011.1 99.74 True relocation, inconsistency = -309751 36712575 36716051 576090 572612 NC_060940.1 JAKCWS010000011.1 99.17 True relocation, inconsistency = 273066 36433334 36439508 582265 576091 NC_060940.1 JAKCWS010000011.1 99.82 True local misassembly 36434021 36436731 584976 582266 NC_060940.1 JAKCWS010000011.1 99.84 True translocation 49432037 49434700 588458 585796 NC_060929.1 JAKCWS010000011.1 98.2 True local misassembly 49430877 49435955 594713 589635 NC_060929.1 JAKCWS010000011.1 98.39 True local misassembly 49435389 49435972 595297 594714 NC_060929.1 JAKCWS010000011.1 97.05 True indel: indel (<= 5bp) 49433636 49435388 597052 595300 NC_060929.1 JAKCWS010000011.1 98.35 True local misassembly 49435389 49436674 599034 597749 NC_060929.1 JAKCWS010000011.1 97.12 True indel: indel (<= 5bp) 49433636 49435388 600789 599037 NC_060929.1 JAKCWS010000011.1 98.06 True indel: stretch of mismatches 49433033 49433579 601392 600846 NC_060929.1 JAKCWS010000011.1 97.26 True local misassembly 49432696 49435391 605807 603113 NC_060929.1 JAKCWS010000011.1 98.0 True CONTIG JAKCWS010000011.1 605807 misassembled 202718 203339 6913 7534 NC_060935.1 CM039050.1 99.36 True indel: indel (<= 5bp) 203341 206498 7535 10692 NC_060935.1 CM039050.1 98.73 True local misassembly 207149 208829 11974 13654 NC_060935.1 CM039050.1 95.54 True local misassembly 211076 212290 16846 18060 NC_060935.1 CM039050.1 95.39 True local misassembly 212291 212864 18187 18760 NC_060935.1 CM039050.1 96.34 True local misassembly 215582 216572 21794 22784 NC_060935.1 CM039050.1 95.96 True local misassembly 216573 217272 23163 23862 NC_060935.1 CM039050.1 95.57 True local misassembly 218914 219600 26325 27011 NC_060935.1 CM039050.1 95.78 True local misassembly 220101 220732 27952 28583 NC_060935.1 CM039050.1 97.63 True local misassembly 220733 223084 28773 31124 NC_060935.1 CM039050.1 98.68 True indel: indel (<= 5bp) 223090 224243 31125 32278 NC_060935.1 CM039050.1 99.28 True translocation 29559 46233 32279 48372 NC_060941.1 CM039050.1 95.99 True local misassembly 46818 49407 49268 51857 NC_060941.1 CM039050.1 99.88 True indel: indel (<= 5bp) 49518 80248 51969 82699 NC_060941.1 CM039050.1 99.98 True indel: indel (<= 5bp) 80250 94091 82700 96541 NC_060941.1 CM039050.1 99.97 True indel: indel (<= 5bp) 94092 94837 96543 97288 NC_060941.1 CM039050.1 100.0 True indel: indel (> 5bp) 94838 102363 97370 104895 NC_060941.1 CM039050.1 99.93 True indel: indel (> 5bp) 102398 106040 104896 108538 NC_060941.1 CM039050.1 99.73 True local misassembly 106041 110669 110116 114744 NC_060941.1 CM039050.1 99.7 True indel: indel (<= 5bp) 110671 111443 114745 115517 NC_060941.1 CM039050.1 99.87 True indel: indel (> 5bp) 111528 112167 115518 116157 NC_060941.1 CM039050.1 99.84 True local misassembly 112168 112952 118821 119605 NC_060941.1 CM039050.1 99.87 True indel: indel (<= 5bp) 112953 121052 119607 127706 NC_060941.1 CM039050.1 99.93 True indel: indel (> 5bp) 121053 122231 127740 128918 NC_060941.1 CM039050.1 99.24 True local misassembly 122232 123068 129006 129842 NC_060941.1 CM039050.1 97.97 True local misassembly 123311 123860 130425 130974 NC_060941.1 CM039050.1 99.82 True indel: indel (<= 5bp) 123864 124627 130975 131738 NC_060941.1 CM039050.1 99.87 True local misassembly 124628 125486 131909 132767 NC_060941.1 CM039050.1 99.53 True indel: indel (<= 5bp) 125825 126749 133108 134032 NC_060941.1 CM039050.1 98.7 True local misassembly 126873 127387 135101 135615 NC_060941.1 CM039050.1 95.53 True local misassembly 128055 130988 139343 142276 NC_060941.1 CM039050.1 99.73 True indel: indel (<= 5bp) 131154 133406 142439 144691 NC_060941.1 CM039050.1 100.0 True indel: indel (<= 5bp) 133407 137572 144693 148858 NC_060941.1 CM039050.1 99.81 True indel: indel (<= 5bp) 137573 138878 148860 150165 NC_060941.1 CM039050.1 99.85 True indel: indel (<= 5bp) 138880 139873 150166 151159 NC_060941.1 CM039050.1 99.8 True local misassembly 140817 141776 151845 152804 NC_060941.1 CM039050.1 98.96 True local misassembly 142000 143985 154128 156113 NC_060941.1 CM039050.1 99.5 True indel: indel (> 5bp) 144413 146224 156549 158360 NC_060941.1 CM039050.1 99.78 True indel: indel (> 5bp) 146233 147693 158361 159821 NC_060941.1 CM039050.1 99.38 True indel: indel (<= 5bp) 147694 148288 159823 160417 NC_060941.1 CM039050.1 99.16 True local misassembly 149691 150285 161587 162181 NC_060941.1 CM039050.1 100.0 True indel: indel (<= 5bp) 150286 156280 162183 168177 NC_060941.1 CM039050.1 99.65 True local misassembly 156550 157910 168558 169918 NC_060941.1 CM039050.1 99.78 True indel: indel (<= 5bp) 157911 160090 169920 172099 NC_060941.1 CM039050.1 98.67 True local misassembly 164110 165037 174150 175077 NC_060941.1 CM039050.1 99.68 True indel: indel (<= 5bp) 165038 174708 175079 184749 NC_060941.1 CM039050.1 99.91 True indel: indel (<= 5bp) 174711 176849 184750 186888 NC_060941.1 CM039050.1 99.58 True indel: indel (<= 5bp) 176850 178919 186890 188959 NC_060941.1 CM039050.1 99.86 True local misassembly 185145 186942 189307 191104 NC_060941.1 CM039050.1 99.78 True indel: indel (<= 5bp) 186943 198134 191106 202297 NC_060941.1 CM039050.1 99.75 True local misassembly 199213 213541 203017 217345 NC_060941.1 CM039050.1 99.94 True local misassembly 213542 214748 218105 219311 NC_060941.1 CM039050.1 99.83 True local misassembly 215460 219854 219829 224223 NC_060941.1 CM039050.1 99.86 True local misassembly 219915 250452 224447 254984 NC_060941.1 CM039050.1 99.94 True indel: indel (> 5bp) 250866 251856 255443 256433 NC_060941.1 CM039050.1 99.6 True indel: indel (<= 5bp) 251857 252714 256436 257293 NC_060941.1 CM039050.1 99.77 True indel: indel (> 5bp) 252777 254117 257294 258634 NC_060941.1 CM039050.1 100.0 True local misassembly 254309 255598 258635 259924 NC_060941.1 CM039050.1 99.61 True indel: indel (> 5bp) 255661 258034 259925 262298 NC_060941.1 CM039050.1 99.83 True indel: indel (<= 5bp) 258035 260958 262300 265223 NC_060941.1 CM039050.1 99.62 True indel: indel (> 5bp) 260959 264384 265260 268685 NC_060941.1 CM039050.1 99.97 True local misassembly 268376 268906 269437 269967 NC_060941.1 CM039050.1 99.81 True indel: indel (<= 5bp) 268907 269472 269969 270534 NC_060941.1 CM039050.1 100.0 True indel: indel (<= 5bp) 269474 270017 270535 271078 NC_060941.1 CM039050.1 99.63 True indel: indel (<= 5bp) 270018 273947 271080 275009 NC_060941.1 CM039050.1 99.87 True local misassembly 274532 276396 275010 276874 NC_060941.1 CM039050.1 99.62 True local misassembly 278824 283374 279450 284192 NC_060941.1 CM039050.1 95.62 True local misassembly 283874 370591 284575 370765 NC_060941.1 CM039050.1 97.53 True local misassembly 371550 727332 371597 727772 NC_060941.1 CM039050.1 99.63 True indel: indel (> 5bp) 727680 1137985 728083 1141806 NC_060941.1 CM039050.1 95.94 True local misassembly 1138755 1180179 1142654 1184163 NC_060941.1 CM039050.1 98.98 True local misassembly 1180428 3216369 1184500 3223211 NC_060941.1 CM039050.1 99.42 True local misassembly 3216964 4798974 3223213 4805366 NC_060941.1 CM039050.1 99.63 True indel: indel (> 5bp) 4799143 6088554 4805561 6094711 NC_060941.1 CM039050.1 99.62 True local misassembly 6090874 8849833 6095549 8850491 NC_060941.1 CM039050.1 99.61 True indel: indel (<= 5bp) 8849872 9337051 8850529 9337835 NC_060941.1 CM039050.1 99.76 True local misassembly 9337640 11602679 9338118 11604097 NC_060941.1 CM039050.1 99.74 True local misassembly 11602985 12258918 11604273 12260442 NC_060941.1 CM039050.1 99.84 True indel: indel (> 5bp) 12258953 12350017 12260509 12351548 NC_060941.1 CM039050.1 99.68 True local misassembly 12350388 13374276 12352071 13375936 NC_060941.1 CM039050.1 99.73 True local misassembly 13374818 13689989 13378228 13693178 NC_060941.1 CM039050.1 99.7 True local misassembly 13691680 14662140 13694373 14664891 NC_060941.1 CM039050.1 99.64 True indel: indel (> 5bp) 14662284 19051019 14665024 19067572 NC_060941.1 CM039050.1 99.4 True relocation, inconsistency = -11012 19040008 19097050 19124614 19067573 NC_060941.1 CM039050.1 99.76 True relocation, scaffold gap is present, inconsistency = 10803 19154368 21965672 19171129 21984415 NC_060941.1 CM039050.1 99.63 True local misassembly 21970984 22059623 21990201 22078694 NC_060941.1 CM039050.1 98.74 True relocation, inconsistency = 11030 22070654 22090490 22078695 22098501 NC_060941.1 CM039050.1 96.1 True local misassembly 22084791 22121088 22098502 22134394 NC_060941.1 CM039050.1 95.26 True relocation, inconsistency = -31215 22089882 22090918 22134403 22135439 NC_060941.1 CM039050.1 99.04 True indel: indel (> 5bp) 22091017 22091744 22135503 22136230 NC_060941.1 CM039050.1 99.73 True indel: indel (> 5bp) 22092105 22092712 22136601 22137208 NC_060941.1 CM039050.1 97.37 True local misassembly 22093442 22093970 22137943 22138471 NC_060941.1 CM039050.1 99.05 True local misassembly 22096937 22097529 22140633 22141225 NC_060941.1 CM039050.1 99.16 True indel: indel (<= 5bp) 22097716 22098615 22141407 22142306 NC_060941.1 CM039050.1 99.44 True local misassembly 22099252 22099780 22142883 22143411 NC_060941.1 CM039050.1 99.43 True indel: indel (<= 5bp) 22100220 22100767 22143856 22144403 NC_060941.1 CM039050.1 97.81 True local misassembly 22101482 22102250 22145138 22145906 NC_060941.1 CM039050.1 99.61 True indel: indel (> 5bp) 22102603 22103155 22146269 22146821 NC_060941.1 CM039050.1 99.82 True local misassembly 22103702 22104225 22147388 22147911 NC_060941.1 CM039050.1 99.81 True indel: indel (<= 5bp) 22104665 22105212 22148356 22148903 NC_060941.1 CM039050.1 99.64 True relocation, inconsistency = 38110 22143800 22144485 22149381 22150066 NC_060941.1 CM039050.1 98.69 True indel: indel (> 5bp) 22144870 22145477 22150421 22151028 NC_060941.1 CM039050.1 97.86 True local misassembly 22146076 22146700 22151592 22152216 NC_060941.1 CM039050.1 98.24 True indel: stretch of mismatches 22146765 22147845 22152281 22153361 NC_060941.1 CM039050.1 98.98 True indel: indel (> 5bp) 22148286 22148910 22153737 22154361 NC_060941.1 CM039050.1 98.88 True relocation, inconsistency = -37995 22111151 22111902 22154597 22155348 NC_060941.1 CM039050.1 98.01 True local misassembly 22112650 22113170 22156046 22156566 NC_060941.1 CM039050.1 99.23 True local misassembly 22114487 22115420 22158193 22159126 NC_060941.1 CM039050.1 99.14 True indel: indel (> 5bp) 22115870 22116417 22159551 22160098 NC_060941.1 CM039050.1 97.26 True local misassembly 22117169 22117690 22160830 22161351 NC_060941.1 CM039050.1 99.23 True local misassembly 22118150 22118706 22162111 22162667 NC_060941.1 CM039050.1 98.2 True relocation, inconsistency = 38595 22157797 22159533 22163163 22164899 NC_060941.1 CM039050.1 99.88 True local misassembly 22160272 22162418 22165623 22167769 NC_060941.1 CM039050.1 99.91 True indel: indel (> 5bp) 22162429 22163299 22167770 22168640 NC_060941.1 CM039050.1 100.0 True indel: indel (<= 5bp) 22163300 22166928 22168646 22172274 NC_060941.1 CM039050.1 99.97 True relocation, inconsistency = 36980 22203909 22246006 22172275 22214412 NC_060941.1 CM039050.1 99.19 True local misassembly 22248466 23070798 22214413 23036726 NC_060941.1 CM039050.1 99.92 True relocation, inconsistency = 25902 23096701 23521281 23036727 23461298 NC_060941.1 CM039050.1 99.62 True local misassembly 23522473 23688351 23461299 23627071 NC_060941.1 CM039050.1 99.02 True relocation, inconsistency = 24982 23713334 23735419 23627072 23649157 NC_060941.1 CM039050.1 99.49 True local misassembly 23731849 23894867 23649158 23811849 NC_060941.1 CM039050.1 98.65 True local misassembly 23892320 24061187 23811850 23980722 NC_060941.1 CM039050.1 99.02 True relocation, inconsistency = -102322 23958866 23961891 23980723 23983748 NC_060941.1 CM039050.1 98.95 True indel: indel (<= 5bp) 23961892 23963207 23983750 23985065 NC_060941.1 CM039050.1 99.16 True indel: indel (<= 5bp) 23963209 23965046 23985066 23986903 NC_060941.1 CM039050.1 98.86 True indel: indel (<= 5bp) 23965048 23969368 23986904 23991224 NC_060941.1 CM039050.1 99.28 True local misassembly 23969707 23974067 23991225 23995585 NC_060941.1 CM039050.1 99.24 True indel: indel (<= 5bp) 23974069 23974798 23995586 23996315 NC_060941.1 CM039050.1 98.49 True local misassembly 23975137 23975906 23996316 23997085 NC_060941.1 CM039050.1 99.61 True local misassembly 23976784 23979161 23997794 24000171 NC_060941.1 CM039050.1 98.7 True local misassembly 23979330 23989854 24000172 24010696 NC_060941.1 CM039050.1 99.46 True local misassembly 23990022 23997999 24010697 24018674 NC_060941.1 CM039050.1 99.49 True local misassembly 23998167 24000714 24018675 24021222 NC_060941.1 CM039050.1 99.49 True local misassembly 24000882 24003429 24021223 24023770 NC_060941.1 CM039050.1 99.37 True local misassembly 24003597 24008859 24023771 24029033 NC_060941.1 CM039050.1 99.33 True local misassembly 24009027 24011574 24029034 24031581 NC_060941.1 CM039050.1 99.65 True local misassembly 24011742 24012808 24031582 24032648 NC_060941.1 CM039050.1 99.25 True local misassembly 24012809 24017746 24032987 24037924 NC_060941.1 CM039050.1 99.01 True local misassembly 24018238 24019538 24038077 24039377 NC_060941.1 CM039050.1 98.85 True local misassembly 24019707 24027526 24039378 24047197 NC_060941.1 CM039050.1 99.36 True local misassembly 24027694 24038386 24047198 24057890 NC_060941.1 CM039050.1 99.1 True local misassembly 24038554 24041101 24057891 24060438 NC_060941.1 CM039050.1 99.33 True local misassembly 24041269 24043372 24060439 24062542 NC_060941.1 CM039050.1 99.24 True local misassembly 24043712 24047440 24062543 24066271 NC_060941.1 CM039050.1 98.98 True local misassembly 24047932 24049242 24066424 24067734 NC_060941.1 CM039050.1 99.01 True local misassembly 24049411 24057220 24067735 24075544 NC_060941.1 CM039050.1 99.54 True local misassembly 24057388 24062695 24075545 24080852 NC_060941.1 CM039050.1 99.25 True relocation, inconsistency = 120167 24186301 24286786 24084291 24184609 NC_060941.1 CM039050.1 96.86 True relocation, inconsistency = 8145 24294932 24302801 24184610 24192479 NC_060941.1 CM039050.1 99.17 True local misassembly 24308232 24340905 24192480 24225153 NC_060941.1 CM039050.1 99.53 True relocation, inconsistency = 126074 24466980 24475033 24225154 24233207 NC_060941.1 CM039050.1 99.62 True fake: not a misassembly (possible transposable element) 24172660 24178281 24233208 24238825 NC_060941.1 CM039050.1 97.92 True fake: not a misassembly (possible transposable element) 24477418 24500652 24238976 24262208 NC_060941.1 CM039050.1 99.07 True relocation, inconsistency = -11706 24488947 24494340 24262209 24267602 NC_060941.1 CM039050.1 96.79 True local misassembly 24488913 24492154 24267603 24271010 NC_060941.1 CM039050.1 97.6 True local misassembly 24486725 24512683 24271011 24297134 NC_060941.1 CM039050.1 98.6 True relocation, inconsistency = -10854 24501830 24521671 24297135 24316976 NC_060941.1 CM039050.1 99.35 True relocation, inconsistency = 20193 24541865 24543828 24316977 24318940 NC_060941.1 CM039050.1 99.7 True local misassembly 24545176 24549023 24319096 24322942 NC_060941.1 CM039050.1 99.07 True relocation, inconsistency = -21715 24527309 24544140 24322943 24339774 NC_060941.1 CM039050.1 99.62 True relocation, inconsistency = -13571 24530570 24552767 24339775 24361637 NC_060941.1 CM039050.1 97.88 True local misassembly 24547340 24552696 24361638 24366993 NC_060941.1 CM039050.1 99.25 True relocation, inconsistency = 25796 24586509 24593159 24375010 24381660 NC_060941.1 CM039050.1 99.63 True relocation, inconsistency = -36314 24556846 24583790 24381661 24408262 NC_060941.1 CM039050.1 95.84 True local misassembly 24586506 24593458 24408263 24415215 NC_060941.1 CM039050.1 99.81 True indel: stretch of mismatches 24593643 24599072 24415400 24420829 NC_060941.1 CM039050.1 99.78 True local misassembly 24593643 24602368 24420830 24429555 NC_060941.1 CM039050.1 99.71 True local misassembly 24596939 24602368 24429556 24434985 NC_060941.1 CM039050.1 99.53 True relocation, inconsistency = 10860 24613653 24614653 24435410 24436410 NC_060941.1 CM039050.1 99.72 True local misassembly 24611939 24622060 24436411 24446532 NC_060941.1 CM039050.1 99.62 True local misassembly 24616631 24620083 24446533 24449985 NC_060941.1 CM039050.1 99.72 True relocation, inconsistency = -10860 24609224 24620083 24449986 24460845 NC_060941.1 CM039050.1 99.66 True relocation, inconsistency = -21720 24598364 24613658 24460846 24476140 NC_060941.1 CM039050.1 99.69 True relocation, inconsistency = 24435 24638094 24657673 24476141 24495720 NC_060941.1 CM039050.1 99.62 True relocation, inconsistency = 75852 24733526 24735649 24495721 24497844 NC_060941.1 CM039050.1 99.66 True relocation, inconsistency = -19005 24716645 24735235 24497845 24516435 NC_060941.1 CM039050.1 99.79 True relocation, inconsistency = -127437 24608213 24613522 24516850 24522158 NC_060941.1 CM039050.1 99.7 True relocation, scaffold gap is present, inconsistency = 1796259 26409982 26422299 24522359 24534675 NC_060941.1 CM039050.1 99.7 True local misassembly 26427729 26430185 24534676 24537132 NC_060941.1 CM039050.1 99.86 True relocation, inconsistency = -27148 26403038 26411182 24537133 24545277 NC_060941.1 CM039050.1 99.73 True relocation, inconsistency = 29863 26441046 26441730 24545278 24545962 NC_060941.1 CM039050.1 99.81 True local misassembly 26439016 26452163 24545963 24559110 NC_060941.1 CM039050.1 99.83 True relocation, inconsistency = -73303 26379288 26384717 24559538 24564967 NC_060941.1 CM039050.1 99.74 True relocation, inconsistency = 70588 26455306 26458020 24564968 24567682 NC_060941.1 CM039050.1 98.03 True local misassembly 26455306 26465570 24567683 24577779 NC_060941.1 CM039050.1 98.19 True relocation, inconsistency = -108430 26357568 26365285 24578207 24585924 NC_060941.1 CM039050.1 99.74 True local misassembly 26362571 26364572 24585925 24587926 NC_060941.1 CM039050.1 99.77 True relocation, inconsistency = 108430 26473003 26484575 24587927 24599499 NC_060941.1 CM039050.1 99.87 True local misassembly 26484836 26495065 24599927 24610156 NC_060941.1 CM039050.1 99.84 True local misassembly 26500926 26510228 24610587 24619889 NC_060941.1 CM039050.1 99.92 True relocation, inconsistency = 54133 26564362 26572506 24619890 24628034 NC_060941.1 CM039050.1 99.81 True relocation, inconsistency = -10860 26561647 26577506 24628035 24643894 NC_060941.1 CM039050.1 99.82 True relocation, inconsistency = -51418 26526089 26530138 24643895 24647944 NC_060941.1 CM039050.1 99.82 True relocation, inconsistency = -53966 26476173 26484802 24647945 24656741 NC_060941.1 CM039050.1 97.07 True relocation, inconsistency = 64826 26549629 26577506 24656742 24684452 NC_060941.1 CM039050.1 99.25 True local misassembly 26574792 26577936 24684453 24687597 NC_060941.1 CM039050.1 99.84 True relocation, inconsistency = -8145 26569792 26580221 24687598 24698027 NC_060941.1 CM039050.1 99.82 True relocation, inconsistency = -24435 26556217 26568203 24698458 24710444 NC_060941.1 CM039050.1 99.81 True relocation, inconsistency = 35127 26603331 26609190 24710445 24716304 NC_060941.1 CM039050.1 99.79 True local misassembly 26614621 26626009 24716305 24727693 NC_060941.1 CM039050.1 99.76 True local misassembly 26623295 26628000 24727694 24732399 NC_060941.1 CM039050.1 99.87 True local misassembly 26622571 26628907 24732400 24738736 NC_060941.1 CM039050.1 99.67 True relocation, inconsistency = -143393 26485515 26489870 24738737 24743259 NC_060941.1 CM039050.1 96.78 True relocation, inconsistency = 105550 26595421 26607004 24743260 24754843 NC_060941.1 CM039050.1 99.77 True relocation, inconsistency = -118958 26488047 26496024 24754844 24762988 NC_060941.1 CM039050.1 97.84 True relocation, inconsistency = 127270 26623295 26626009 24762989 24765703 NC_060941.1 CM039050.1 99.66 True relocation, inconsistency = -295096 26331084 26337139 24765874 24772096 NC_060941.1 CM039050.1 97.41 True relocation, inconsistency = 232819 26569959 26577506 24772097 24779811 NC_060941.1 CM039050.1 97.51 True relocation, inconsistency = 314186 26891693 26892486 24779812 24780605 NC_060941.1 CM039050.1 98.59 True indel: indel (<= 5bp) 26892487 26893491 24780607 24781611 NC_060941.1 CM039050.1 98.81 True relocation, inconsistency = 78228 26976704 26981710 24786596 24791601 NC_060941.1 CM039050.1 98.4 True relocation, inconsistency = -379007 26620488 26626009 24809386 24814907 NC_060941.1 CM039050.1 99.62 True relocation, inconsistency = -135415 26490595 26492390 24814908 24816703 NC_060941.1 CM039050.1 99.77 True local misassembly 26492391 26493004 24816871 24817484 NC_060941.1 CM039050.1 99.47 True relocation, inconsistency = -1020538 25472467 25477496 24817485 24822513 NC_060941.1 CM039050.1 99.72 True relocation, inconsistency = 1561597 27049931 27055627 24833351 24839047 NC_060941.1 CM039050.1 98.36 True relocation, inconsistency = -432628 26623000 26641770 24839048 24857818 NC_060941.1 CM039050.1 99.78 True indel: stretch of mismatches 26641771 26644485 24857819 24860533 NC_060941.1 CM039050.1 99.75 True local misassembly 26641771 26663491 24860534 24882254 NC_060941.1 CM039050.1 99.72 True relocation, inconsistency = -38010 26625482 26644486 24882255 24901208 NC_060941.1 CM039050.1 99.51 True relocation, inconsistency = -19005 26625482 26671205 24901209 24946915 NC_060941.1 CM039050.1 99.68 True relocation, inconsistency = -8145 26663061 26673975 24946916 24957830 NC_060941.1 CM039050.1 99.7 True relocation, inconsistency = -21720 26652647 26665523 24958222 24971098 NC_060941.1 CM039050.1 99.71 True relocation, inconsistency = -9338 26656186 26673975 24971099 24988871 NC_060941.1 CM039050.1 99.59 True local misassembly 26668546 26673920 24988872 24994246 NC_060941.1 CM039050.1 99.73 True relocation, inconsistency = 7477 26681582 26687654 24994431 25000503 NC_060941.1 CM039050.1 99.83 True local misassembly 26680703 26712075 25000504 25031873 NC_060941.1 CM039050.1 98.64 True local misassembly 26706646 26725931 25031874 25050993 NC_060941.1 CM039050.1 96.18 True relocation, inconsistency = -19010 26706922 26739551 25050994 25083625 NC_060941.1 CM039050.1 99.1 True relocation, inconsistency = -21393 26718159 26738654 25083626 25103955 NC_060941.1 CM039050.1 97.55 True local misassembly 26740354 26761387 25103956 25125158 NC_060941.1 CM039050.1 98.62 True relocation, inconsistency = -21058 26740330 26781536 25125159 25167042 NC_060941.1 CM039050.1 96.79 True relocation, inconsistency = -18003 26763534 26770240 25167043 25173750 NC_060941.1 CM039050.1 96.86 True local misassembly 26767525 26801838 25173751 25208233 NC_060941.1 CM039050.1 95.71 True relocation, inconsistency = -47199 26754782 26756484 25208376 25210078 NC_060941.1 CM039050.1 98.06 True local misassembly 26757184 26759939 25210778 25213533 NC_060941.1 CM039050.1 98.44 True relocation, inconsistency = 73156 26833096 26841019 25213534 25221456 NC_060941.1 CM039050.1 95.41 True local misassembly 26835758 26846373 25221457 25232075 NC_060941.1 CM039050.1 98.47 True relocation, inconsistency = 44175 26891280 26901805 25232807 25243495 NC_060941.1 CM039050.1 96.67 True relocation, inconsistency = -12390 26889416 26902655 25243496 25256735 NC_060941.1 CM039050.1 97.28 True relocation, inconsistency = 208887 27111543 27186929 25256736 25332452 NC_060941.1 CM039050.1 96.97 True relocation, inconsistency = 45510 27232440 27239907 25332453 25339920 NC_060941.1 CM039050.1 97.73 True relocation, inconsistency = -107450 27132458 27172092 25339921 25379379 NC_060941.1 CM039050.1 96.9 True relocation, inconsistency = 53136 27225229 27342707 25379380 25496345 NC_060941.1 CM039050.1 98.62 True relocation, inconsistency = 28337 27371045 27396469 25496346 25521605 NC_060941.1 CM039050.1 95.91 True relocation, inconsistency = 74332 27470802 27476212 25521606 25526848 NC_060941.1 CM039050.1 96.97 True local misassembly 27473866 27475437 25526881 25528452 NC_060941.1 CM039050.1 98.41 True indel: indel (<= 5bp) 27475438 27476222 25528454 25529238 NC_060941.1 CM039050.1 98.47 True relocation, inconsistency = -107763 27369112 27372742 25529891 25533521 NC_060941.1 CM039050.1 99.56 True fake: not a misassembly (possible transposable element) 27196731 27197512 25533522 25534303 NC_060941.1 CM039050.1 98.7 True fake: not a misassembly (possible transposable element) 27369112 27372742 25534304 25537934 NC_060941.1 CM039050.1 99.64 True fake: not a misassembly (possible transposable element) 27196731 27197512 25537935 25538716 NC_060941.1 CM039050.1 98.73 True fake: not a misassembly (possible transposable element) 27369112 27372742 25538717 25542347 NC_060941.1 CM039050.1 99.59 True fake: not a misassembly (possible transposable element) 27196731 27197512 25542348 25543129 NC_060941.1 CM039050.1 98.66 True fake: not a misassembly (possible transposable element) 27369112 27372742 25543130 25546760 NC_060941.1 CM039050.1 99.59 True relocation, inconsistency = -176012 27196731 27197479 25546761 25547509 NC_060941.1 CM039050.1 98.7 True relocation, inconsistency = -10685 27186795 27187946 25547510 25548661 NC_060941.1 CM039050.1 98.26 True relocation, inconsistency = 180586 27369112 27394043 25549241 25574341 NC_060941.1 CM039050.1 95.77 True relocation, inconsistency = 32899 27427157 27431918 25574556 25579317 NC_060941.1 CM039050.1 97.73 True local misassembly 27432254 27434688 25579318 25581752 NC_060941.1 CM039050.1 98.36 True local misassembly 27434856 27442419 25581753 25589316 NC_060941.1 CM039050.1 98.57 True local misassembly 27442926 27446275 25589317 25592666 NC_060941.1 CM039050.1 97.88 True relocation, inconsistency = 20031 27466525 27474836 25592885 25601024 NC_060941.1 CM039050.1 96.02 True fake: not a misassembly (possible transposable element) 27207577 27209074 25601070 25602567 NC_060941.1 CM039050.1 97.67 True fake: not a misassembly (possible transposable element) 27476210 27481579 25602568 25607937 NC_060941.1 CM039050.1 99.18 True local misassembly 27485265 27537388 25608217 25660337 NC_060941.1 CM039050.1 99.69 True relocation, inconsistency = 25694 27563083 27565230 25660338 25662485 NC_060941.1 CM039050.1 99.26 True relocation, inconsistency = -134809 27430422 27431274 25662486 25663338 NC_060941.1 CM039050.1 97.45 True indel: indel (<= 5bp) 27431276 27431973 25663339 25664036 NC_060941.1 CM039050.1 97.28 True local misassembly 27432141 27434688 25664037 25666584 NC_060941.1 CM039050.1 98.43 True local misassembly 27434856 27437839 25666585 25669568 NC_060941.1 CM039050.1 98.76 True indel: indel (<= 5bp) 27437910 27447614 25669637 25679341 NC_060941.1 CM039050.1 98.82 True indel: stretch of mismatches 27448032 27450142 25679759 25681869 NC_060941.1 CM039050.1 98.29 True local misassembly 27450310 27455350 25681870 25686910 NC_060941.1 CM039050.1 98.0 True local misassembly 27455852 27458014 25687076 25689238 NC_060941.1 CM039050.1 97.79 True relocation, inconsistency = 23097 27481112 27486893 25689239 25695020 NC_060941.1 CM039050.1 97.89 True local misassembly 27485168 27486531 25695157 25696520 NC_060941.1 CM039050.1 98.31 True local misassembly 27485612 27486921 25696613 25697922 NC_060941.1 CM039050.1 98.24 True relocation, inconsistency = 50015 27540505 29395223 25701491 27556765 NC_060941.1 CM039050.1 99.8 True local misassembly 29399491 31918208 27556766 30073845 NC_060941.1 CM039050.1 99.71 True indel: stretch of mismatches 31918583 37327660 30074220 35483012 NC_060941.1 CM039050.1 99.8 True relocation, inconsistency = 1549534 38877195 38920182 35525964 35483013 NC_060941.1 CM039050.1 99.58 True relocation, inconsistency = -51111 38901570 38928305 35552527 35525965 NC_060941.1 CM039050.1 98.48 True relocation, inconsistency = -21278 38915777 38922847 35559635 35552528 NC_060941.1 CM039050.1 97.75 True relocation, inconsistency = 527180 37444976 38385665 35562567 36503402 NC_060941.1 CM039050.1 99.78 True local misassembly 38388890 38982874 36503492 37100855 NC_060941.1 CM039050.1 99.28 True fake: not a misassembly (possible transposable element) 38982875 38984160 37102137 37100856 NC_060941.1 CM039050.1 99.69 True fake: not a misassembly (possible transposable element) 38984161 39057378 37102138 37175344 NC_060941.1 CM039050.1 99.83 True relocation, inconsistency = -1843179 37214200 37230774 37175345 37191912 NC_060941.1 CM039050.1 99.28 True relocation, scaffold gap is present, inconsistency = 1731737 38963041 39013534 37192442 37242866 NC_060941.1 CM039050.1 99.64 True relocation, inconsistency = -1843111 37170424 37284784 37242867 37357300 NC_060941.1 CM039050.1 99.47 True relocation, inconsistency = -89491 37195606 37199495 37361189 37357301 NC_060941.1 CM039050.1 99.5 True relocation, inconsistency = 1677699 38877195 38910239 37361190 37394290 NC_060941.1 CM039050.1 99.43 True relocation, inconsistency = 79583 38989823 40362731 37394291 38767409 NC_060941.1 CM039050.1 99.75 True local misassembly 40362795 44169769 38767652 42573623 NC_060941.1 CM039050.1 99.77 True relocation, inconsistency = -43110 44126660 44205096 42573624 42652029 NC_060941.1 CM039050.1 98.99 True local misassembly 44208915 46358952 42652030 44799008 NC_060941.1 CM039050.1 99.48 True relocation, inconsistency = 891125 47250078 47417298 44966192 44799009 NC_060941.1 CM039050.1 99.59 True relocation, scaffold gap is present, inconsistency = 122296 47122751 47127281 44966693 44971228 NC_060941.1 CM039050.1 98.13 True indel: indel (> 5bp) 47127404 47139654 44971376 44983612 NC_060941.1 CM039050.1 97.85 True relocation, inconsistency = 18649081 65788878 65802326 44997221 44983755 NC_060941.1 CM039050.1 97.55 True relocation, inconsistency = 19342561 46445193 46446316 44998345 44997222 NC_060941.1 CM039050.1 98.98 True local misassembly 46442990 46444647 45003806 45002149 NC_060941.1 CM039050.1 98.79 True indel: indel (<= 5bp) 46440518 46442988 45006277 45003807 NC_060941.1 CM039050.1 99.03 True relocation, inconsistency = -711259 47150719 47151270 45007335 45006784 NC_060941.1 CM039050.1 99.64 True local misassembly 47148667 47150167 45009394 45007894 NC_060941.1 CM039050.1 98.87 True indel: indel (<= 5bp) 47147255 47148665 45010805 45009395 NC_060941.1 CM039050.1 99.43 True indel: indel (<= 5bp) 47146696 47147253 45011363 45010806 NC_060941.1 CM039050.1 99.28 True indel: indel (<= 5bp) 47144594 47146695 45013466 45011365 NC_060941.1 CM039050.1 99.14 True local misassembly 47138802 47139647 45014821 45013976 NC_060941.1 CM039050.1 99.29 True indel: indel (<= 5bp) 47137906 47138801 45015721 45014826 NC_060941.1 CM039050.1 98.77 True indel: indel (<= 5bp) 47137279 47137904 45016347 45015722 NC_060941.1 CM039050.1 99.04 True indel: indel (<= 5bp) 47134943 47136793 45018678 45016828 NC_060941.1 CM039050.1 98.92 True indel: indel (<= 5bp) 47134434 47134940 45019185 45018679 NC_060941.1 CM039050.1 98.82 True indel: indel (<= 5bp) 47133797 47134405 45019821 45019213 NC_060941.1 CM039050.1 98.85 True local misassembly 47131137 47133178 45022487 45020446 NC_060941.1 CM039050.1 98.87 True indel: indel (> 5bp) 47129915 47131105 45023687 45022497 NC_060941.1 CM039050.1 99.5 True local misassembly 47127496 47129383 45026087 45024200 NC_060941.1 CM039050.1 98.36 True indel: indel (> 5bp) 47122790 47127281 45030850 45026354 NC_060941.1 CM039050.1 97.15 True relocation, inconsistency = 357435 46447400 46765354 45030851 45349490 NC_060941.1 CM039050.1 98.85 True local misassembly 46766001 47099180 45349985 45684661 NC_060941.1 CM039050.1 98.07 True relocation, inconsistency = 296591 46454414 46469409 45699660 45684662 NC_060941.1 CM039050.1 96.78 True relocation, inconsistency = 644995 47114417 47154193 45699673 45739563 NC_060941.1 CM039050.1 98.29 True relocation, inconsistency = 18634722 65789979 65792349 45741941 45739564 NC_060941.1 CM039050.1 97.08 True relocation, inconsistency = 19342567 46435230 46447411 45754102 45741942 NC_060941.1 CM039050.1 98.67 True relocation, inconsistency = 903652 47351064 52585183 45754103 50989006 NC_060941.1 CM039050.1 99.76 True local misassembly 52585620 55121344 50989309 53524972 NC_060941.1 CM039050.1 99.76 True local misassembly 55121536 55471365 53525322 53875295 NC_060941.1 CM039050.1 99.86 True indel: indel (> 5bp) 55471615 56375928 53875514 54780498 NC_060941.1 CM039050.1 99.75 True local misassembly 56377013 58005735 54781544 56410511 NC_060941.1 CM039050.1 99.83 True local misassembly 58007533 58031784 56413125 56437327 NC_060941.1 CM039050.1 99.47 True indel: stretch of mismatches 58031812 68947347 56437355 67355207 NC_060941.1 CM039050.1 99.69 True local misassembly 68949506 71154410 67357044 69560820 NC_060941.1 CM039050.1 99.69 True local misassembly 71154607 77817338 69561170 76230461 NC_060941.1 CM039050.1 99.6 True indel: indel (> 5bp) 77817489 79332020 76230689 77746468 NC_060941.1 CM039050.1 99.4 True local misassembly 79332850 81802053 77747362 80210549 NC_060941.1 CM039050.1 99.12 True indel: indel (> 5bp) 81802165 82837277 80210690 81243432 NC_060941.1 CM039050.1 99.24 True indel: indel (> 5bp) 82837427 83018141 81243606 81422806 NC_060941.1 CM039050.1 98.77 True local misassembly 83018099 83845816 81422872 82257747 NC_060941.1 CM039050.1 98.48 True relocation, inconsistency = 144344 83990161 84237458 82257748 82503582 NC_060941.1 CM039050.1 97.86 True local misassembly 84238157 84238798 82503913 82504554 NC_060941.1 CM039050.1 96.26 True local misassembly 84239916 84240966 82505658 82506708 NC_060941.1 CM039050.1 98.29 True local misassembly 84240967 84241585 82507508 82508126 NC_060941.1 CM039050.1 98.38 True local misassembly 84241847 84242488 82510154 82510795 NC_060941.1 CM039050.1 99.53 True local misassembly 84243057 84244323 82511345 82512611 NC_060941.1 CM039050.1 99.68 True indel: indel (<= 5bp) 84244324 84245353 82512613 82513642 NC_060941.1 CM039050.1 99.81 True indel: indel (<= 5bp) 84245354 84247728 82513646 82516020 NC_060941.1 CM039050.1 99.87 True indel: indel (<= 5bp) 84247729 84248252 82516022 82516545 NC_060941.1 CM039050.1 99.24 True indel: indel (<= 5bp) 84248253 84261898 82516547 82530192 NC_060941.1 CM039050.1 99.99 True indel: indel (<= 5bp) 84261901 84273090 82530193 82541382 NC_060941.1 CM039050.1 99.99 True indel: indel (> 5bp) 84273351 84274114 82541595 82542358 NC_060941.1 CM039050.1 99.74 True CONTIG CM039050.1 82545514 misassembled 25219493 25224519 36734 31708 NC_060941.1 JAKCWS010000013.1 99.84 True relocation, inconsistency = -154593 25324353 25330481 86467 80339 NC_060941.1 JAKCWS010000013.1 99.74 True relocation, inconsistency = -141180 25462437 25465532 89563 86468 NC_060941.1 JAKCWS010000013.1 99.91 True relocation, inconsistency = -51588 25467868 25475592 135720 127996 NC_060941.1 JAKCWS010000013.1 99.82 True local misassembly 25447366 25456584 150792 141574 NC_060941.1 JAKCWS010000013.1 99.77 True local misassembly 25435665 25445723 162493 152435 NC_060941.1 JAKCWS010000013.1 99.81 True relocation, inconsistency = -19005 25424805 25434156 192358 183007 NC_060941.1 JAKCWS010000013.1 99.89 True relocation, inconsistency = 21718 25402144 25403086 193301 192359 NC_060941.1 JAKCWS010000013.1 99.71 True relocation, inconsistency = -10860 25399947 25402186 206358 204119 NC_060941.1 JAKCWS010000013.1 99.81 True local misassembly 25384083 25397231 219339 206359 NC_060941.1 JAKCWS010000013.1 98.39 True relocation, inconsistency = 100455 25273720 25283627 229247 219340 NC_060941.1 JAKCWS010000013.1 99.83 True relocation, inconsistency = 59563 25205358 25213903 238046 229501 NC_060941.1 JAKCWS010000013.1 99.84 True local misassembly 25192329 25199497 245654 238477 NC_060941.1 JAKCWS010000013.1 99.72 True relocation, inconsistency = -317487 25501774 25508138 253696 247332 NC_060941.1 JAKCWS010000013.1 99.94 True relocation, inconsistency = 173763 25326643 25328010 255064 253697 NC_060941.1 JAKCWS010000013.1 99.74 True relocation, inconsistency = -141180 25462437 25467822 260450 255065 NC_060941.1 JAKCWS010000013.1 99.91 True relocation, inconsistency = -46158 25467868 25475592 301177 293453 NC_060941.1 JAKCWS010000013.1 99.79 True local misassembly 25462437 25465152 303893 301178 NC_060941.1 JAKCWS010000013.1 99.89 True local misassembly 25447366 25456584 318964 309746 NC_060941.1 JAKCWS010000013.1 99.82 True local misassembly 25435665 25445723 330665 320607 NC_060941.1 JAKCWS010000013.1 99.83 True relocation, inconsistency = -8145 25424805 25434156 349670 340319 NC_060941.1 JAKCWS010000013.1 99.84 True relocation, inconsistency = 43437 25379605 25381367 351433 349671 NC_060941.1 JAKCWS010000013.1 99.57 True relocation, inconsistency = 81792 25285918 25287860 363328 361386 NC_060941.1 JAKCWS010000013.1 99.8 True relocation, inconsistency = -111314 25384083 25397231 376477 363329 NC_060941.1 JAKCWS010000013.1 99.68 True indel: stretch of mismatches 25381236 25384082 379324 376478 NC_060941.1 JAKCWS010000013.1 99.6 True indel: stretch of mismatches 25374175 25381235 386385 379325 NC_060941.1 JAKCWS010000013.1 99.86 True local misassembly 25370376 25371123 387469 386722 NC_060941.1 JAKCWS010000013.1 99.71 True local misassembly 25363315 25375805 399960 387470 NC_060941.1 JAKCWS010000013.1 99.83 True local misassembly 25352538 25360599 408022 399961 NC_060941.1 JAKCWS010000013.1 99.82 True local misassembly 25348656 25349822 409189 408023 NC_060941.1 JAKCWS010000013.1 99.76 True relocation, inconsistency = -13575 25338877 25362230 432543 409190 NC_060941.1 JAKCWS010000013.1 99.78 True relocation, inconsistency = -8145 25338877 25347021 440687 432544 NC_060941.1 JAKCWS010000013.1 99.77 True relocation, inconsistency = 43440 25277712 25295019 458411 441105 NC_060941.1 JAKCWS010000013.1 99.86 True relocation, inconsistency = 493786 24779530 24783925 462807 458412 NC_060941.1 JAKCWS010000013.1 99.67 True relocation, inconsistency = -510076 25277712 25289605 474701 462808 NC_060941.1 JAKCWS010000013.1 99.87 True relocation, inconsistency = -108600 25384507 25386311 476506 474702 NC_060941.1 JAKCWS010000013.1 99.67 True relocation, inconsistency = 97740 25275781 25286766 487492 476507 NC_060941.1 JAKCWS010000013.1 99.85 True relocation, inconsistency = 45988 25226307 25229792 490978 487493 NC_060941.1 JAKCWS010000013.1 99.8 True relocation, inconsistency = -8145 25224900 25234451 500362 490979 NC_060941.1 JAKCWS010000013.1 98.08 True relocation, inconsistency = 19005 25200582 25205758 505675 500499 NC_060941.1 JAKCWS010000013.1 99.81 True local misassembly 25192514 25199497 513752 506760 NC_060941.1 JAKCWS010000013.1 99.69 True relocation, inconsistency = -143719 25325188 25336232 524797 513753 NC_060941.1 JAKCWS010000013.1 99.67 True relocation, inconsistency = 187159 25131705 25138028 531121 524798 NC_060941.1 JAKCWS010000013.1 99.75 True local misassembly 25124454 25134005 541087 531536 NC_060941.1 JAKCWS010000013.1 99.81 True local misassembly 25124454 25129883 546517 541088 NC_060941.1 JAKCWS010000013.1 99.83 True relocation, inconsistency = -54300 25173324 25178526 551947 546745 NC_060941.1 JAKCWS010000013.1 99.88 True local misassembly 25165179 25170381 557377 552175 NC_060941.1 JAKCWS010000013.1 99.92 True relocation, inconsistency = 423205 24722075 24741670 577276 557681 NC_060941.1 JAKCWS010000013.1 99.71 True relocation, inconsistency = -406915 25125750 25128989 580516 577277 NC_060941.1 JAKCWS010000013.1 99.81 True relocation, inconsistency = -86871 25206012 25212620 587125 580517 NC_060941.1 JAKCWS010000013.1 99.7 True relocation, inconsistency = 32571 25172016 25173020 588550 587546 NC_060941.1 JAKCWS010000013.1 99.78 True relocation, inconsistency = 38010 25126275 25134005 596281 588551 NC_060941.1 JAKCWS010000013.1 99.84 True relocation, inconsistency = -111306 25233016 25237580 600846 596282 NC_060941.1 JAKCWS010000013.1 99.88 True relocation, inconsistency = 89586 25140517 25143231 603759 601045 NC_060941.1 JAKCWS010000013.1 99.94 True local misassembly 25140744 25145946 608962 603760 NC_060941.1 JAKCWS010000013.1 99.94 True indel: stretch of mismatches 25138033 25140743 611673 608963 NC_060941.1 JAKCWS010000013.1 99.94 True relocation, inconsistency = -8145 25140744 25145946 617107 611905 NC_060941.1 JAKCWS010000013.1 99.94 True local misassembly 25133537 25135313 618887 617108 NC_060941.1 JAKCWS010000013.1 99.79 True CONTIG JAKCWS010000013.1 618887 misassembled 25151615 25156806 1 5192 NC_060941.1 JAKCWS010000014.1 99.98 True relocation, inconsistency = -32580 25124454 25127168 5420 8134 NC_060941.1 JAKCWS010000014.1 99.87 True relocation, inconsistency = -84166 25043003 25048205 8135 13337 NC_060941.1 JAKCWS010000014.1 99.87 True relocation, inconsistency = 116746 25165179 25173020 13565 21406 NC_060941.1 JAKCWS010000014.1 99.94 True local misassembly 25167591 25170381 21407 24197 NC_060941.1 JAKCWS010000014.1 99.8 True relocation, inconsistency = 89586 25260198 25269920 24428 34317 NC_060941.1 JAKCWS010000014.1 98.16 True local misassembly 25275781 25296333 34748 55300 NC_060941.1 JAKCWS010000014.1 99.91 True local misassembly 25299049 25302193 55301 58445 NC_060941.1 JAKCWS010000014.1 99.8 True local misassembly 25299479 25311618 58446 70585 NC_060941.1 JAKCWS010000014.1 99.86 True local misassembly 25314334 25315768 70586 72020 NC_060941.1 JAKCWS010000014.1 99.88 True relocation, inconsistency = -8145 25307624 25316755 72021 81152 NC_060941.1 JAKCWS010000014.1 99.79 True relocation, inconsistency = 24435 25341191 25346868 81153 86830 NC_060941.1 JAKCWS010000014.1 99.84 True relocation, inconsistency = -8312 25338877 25352118 87151 100392 NC_060941.1 JAKCWS010000014.1 99.71 True relocation, inconsistency = -13575 25338877 25354085 100726 115934 NC_060941.1 JAKCWS010000014.1 99.78 True local misassembly 25359516 25365595 115935 122014 NC_060941.1 JAKCWS010000014.1 99.79 True relocation, inconsistency = 8145 25373767 25402186 122041 150460 NC_060941.1 JAKCWS010000014.1 99.93 True relocation, inconsistency = 313268 25721605 25733675 156611 168845 NC_060941.1 JAKCWS010000014.1 98.59 True relocation, inconsistency = -124889 25608787 25609572 168846 169631 NC_060941.1 JAKCWS010000014.1 100.0 True local misassembly 25612288 25617717 169632 175061 NC_060941.1 JAKCWS010000014.1 99.96 True relocation, inconsistency = 16290 25634008 25655366 175062 196420 NC_060941.1 JAKCWS010000014.1 99.84 True relocation, inconsistency = 8145 25663512 25671587 196421 204496 NC_060941.1 JAKCWS010000014.1 99.89 True relocation, inconsistency = -59730 25612288 25617356 204927 209995 NC_060941.1 JAKCWS010000014.1 99.96 True relocation, inconsistency = 19005 25636362 25639076 209996 212710 NC_060941.1 JAKCWS010000014.1 99.88 True relocation, inconsistency = 40559 25687010 25700950 220085 234025 NC_060941.1 JAKCWS010000014.1 99.87 True local misassembly 25698236 25699234 234026 235024 NC_060941.1 JAKCWS010000014.1 99.8 True local misassembly 25693805 25701452 235025 242672 NC_060941.1 JAKCWS010000014.1 99.9 True local misassembly 25696023 25699167 242673 245817 NC_060941.1 JAKCWS010000014.1 99.82 True indel: stretch of mismatches 25699168 25706076 245818 252726 NC_060941.1 JAKCWS010000014.1 99.93 True local misassembly 25703664 25710026 253029 259392 NC_060941.1 JAKCWS010000014.1 99.95 True indel: stretch of mismatches 25710027 25719646 259393 269012 NC_060941.1 JAKCWS010000014.1 99.98 True local misassembly 25721605 25730612 270971 279978 NC_060941.1 JAKCWS010000014.1 99.91 True relocation, inconsistency = 24936 25759687 25762401 284117 286831 NC_060941.1 JAKCWS010000014.1 99.93 True local misassembly 25759687 25768959 286832 296104 NC_060941.1 JAKCWS010000014.1 99.9 True relocation, inconsistency = 1609136 27378096 27380236 296105 298245 NC_060941.1 JAKCWS010000014.1 97.99 True relocation, inconsistency = -1383108 25997129 26012029 298246 313146 NC_060941.1 JAKCWS010000014.1 99.93 True local misassembly 26014745 26017878 313147 316280 NC_060941.1 JAKCWS010000014.1 99.9 True relocation, inconsistency = -215503 25802376 25815794 316281 329365 NC_060941.1 JAKCWS010000014.1 97.41 True relocation, inconsistency = -10860 25805365 25819558 329796 343822 NC_060941.1 JAKCWS010000014.1 98.75 True fake: not a misassembly (possible transposable element) 26040157 26041620 343823 345286 NC_060941.1 JAKCWS010000014.1 99.94 True fake: not a misassembly (possible transposable element) 25821023 25826391 345287 350655 NC_060941.1 JAKCWS010000014.1 99.83 True local misassembly 25821023 25839418 350717 369112 NC_060941.1 JAKCWS010000014.1 99.96 True local misassembly 25836704 25838517 369113 370926 NC_060941.1 JAKCWS010000014.1 99.92 True local misassembly 25833088 25839418 370927 377257 NC_060941.1 JAKCWS010000014.1 99.91 True relocation, inconsistency = 217883 26062949 26066287 382905 386243 NC_060941.1 JAKCWS010000014.1 99.96 True indel: stretch of mismatches 26066288 26085841 386244 405797 NC_060941.1 JAKCWS010000014.1 99.95 True relocation, inconsistency = -217883 25868389 25881263 406228 419102 NC_060941.1 JAKCWS010000014.1 99.95 True local misassembly 25884572 25889678 422411 427517 NC_060941.1 JAKCWS010000014.1 99.9 True local misassembly 25898254 25903469 430663 435878 NC_060941.1 JAKCWS010000014.1 99.89 True relocation, inconsistency = 402513 26305983 26316842 435879 446738 NC_060941.1 JAKCWS010000014.1 99.84 True indel: stretch of mismatches 26316843 26351710 446739 481606 NC_060941.1 JAKCWS010000014.1 99.84 True relocation, inconsistency = 62445 26414156 26420893 481607 488345 NC_060941.1 JAKCWS010000014.1 99.61 True relocation, inconsistency = -54299 26366595 26373172 488346 494923 NC_060941.1 JAKCWS010000014.1 99.91 True relocation, inconsistency = -27150 26346023 26367918 494924 516819 NC_060941.1 JAKCWS010000014.1 99.83 True relocation, inconsistency = 21720 26389639 26399909 516820 527090 NC_060941.1 JAKCWS010000014.1 99.78 True local misassembly 26402625 26404466 527091 528764 NC_060941.1 JAKCWS010000014.1 98.04 True CONTIG JAKCWS010000014.1 528764 misassembled 26525258 26531518 11171 4911 NC_060941.1 JAKCWS010000015.1 99.7 True fake: not a misassembly (possible transposable element) 26598744 26603657 16085 11172 NC_060941.1 JAKCWS010000015.1 99.79 True fake: not a misassembly (possible transposable element) 26489820 26496024 41179 34975 NC_060941.1 JAKCWS010000015.1 99.82 True relocation, inconsistency = 349564 26132254 26137392 49181 44043 NC_060941.1 JAKCWS010000015.1 99.96 True relocation, inconsistency = -16290 26134969 26140093 62756 57632 NC_060941.1 JAKCWS010000015.1 99.96 True relocation, inconsistency = 250297 25873715 25878818 73713 68610 NC_060941.1 JAKCWS010000015.1 99.82 True relocation, inconsistency = -45646 25911320 25918550 81587 74524 NC_060941.1 JAKCWS010000015.1 97.59 True fake: not a misassembly (possible transposable element) 26116137 26118685 84302 81588 NC_060941.1 JAKCWS010000015.1 95.24 True fake: not a misassembly (possible transposable element) 25902330 25907676 90576 85230 NC_060941.1 JAKCWS010000015.1 99.85 True local misassembly 25898254 25902337 94995 90912 NC_060941.1 JAKCWS010000015.1 99.88 True relocation, inconsistency = -410314 26295123 26302840 108440 100723 NC_060941.1 JAKCWS010000015.1 99.83 True relocation, inconsistency = 214152 26078127 26080970 111284 108441 NC_060941.1 JAKCWS010000015.1 99.86 True relocation, inconsistency = 179873 25868389 25880818 141148 128720 NC_060941.1 JAKCWS010000015.1 99.9 True local misassembly 25861476 25871103 150776 141149 NC_060941.1 JAKCWS010000015.1 99.89 True relocation, inconsistency = -43440 25898254 25902337 157438 153355 NC_060941.1 JAKCWS010000015.1 99.85 True relocation, inconsistency = -491765 26379638 26384837 167819 162620 NC_060941.1 JAKCWS010000015.1 99.77 True relocation, inconsistency = 472760 25873101 25880818 201596 193879 NC_060941.1 JAKCWS010000015.1 99.87 True local misassembly 25873389 25875815 204023 201597 NC_060941.1 JAKCWS010000015.1 99.84 True indel: stretch of mismatches 25861476 25873388 215936 204024 NC_060941.1 JAKCWS010000015.1 99.91 True relocation, inconsistency = 14935 25829526 25836491 232951 225986 NC_060941.1 JAKCWS010000015.1 99.89 True relocation, inconsistency = -634135 26455306 26463352 241306 233260 NC_060941.1 JAKCWS010000015.1 99.79 True relocation, inconsistency = 192763 26261445 26262542 242404 241307 NC_060941.1 JAKCWS010000015.1 97.52 True relocation, inconsistency = -105885 26359856 26367329 249878 242405 NC_060941.1 JAKCWS010000015.1 99.74 True relocation, inconsistency = -76018 26424756 26435873 260996 249879 NC_060941.1 JAKCWS010000015.1 99.73 True indel: stretch of mismatches 26413898 26424755 271856 260997 NC_060941.1 JAKCWS010000015.1 99.7 True local misassembly 26401008 26408467 279316 271857 NC_060941.1 JAKCWS010000015.1 99.74 True relocation, inconsistency = -32578 26427729 26433321 285173 279581 NC_060941.1 JAKCWS010000015.1 99.85 True local misassembly 26400323 26430443 315294 285174 NC_060941.1 JAKCWS010000015.1 99.72 True local misassembly 26395499 26403037 322833 315295 NC_060941.1 JAKCWS010000015.1 99.73 True indel: stretch of mismatches 26389721 26395498 328611 322834 NC_060941.1 JAKCWS010000015.1 99.68 True relocation, inconsistency = -8145 26392027 26397865 334450 328612 NC_060941.1 JAKCWS010000015.1 99.68 True relocation, inconsistency = 16290 26366927 26375736 343260 334451 NC_060941.1 JAKCWS010000015.1 99.75 True relocation, inconsistency = -46155 26395499 26413058 360843 343284 NC_060941.1 JAKCWS010000015.1 99.73 True indel: stretch of mismatches 26392027 26395498 364315 360844 NC_060941.1 JAKCWS010000015.1 99.68 True relocation, inconsistency = 16290 26366927 26375736 373125 364316 NC_060941.1 JAKCWS010000015.1 99.75 True local misassembly 26359856 26361219 374766 373403 NC_060941.1 JAKCWS010000015.1 99.64 True local misassembly 26354545 26362570 382792 374767 NC_060941.1 JAKCWS010000015.1 99.73 True local misassembly 26333133 26359974 409634 382793 NC_060941.1 JAKCWS010000015.1 99.81 True local misassembly 26316085 26330417 423967 409635 NC_060941.1 JAKCWS010000015.1 99.86 True CONTIG JAKCWS010000015.1 423967 misassembled 25884572 25889678 9273 4167 NC_060941.1 JAKCWS010000016.1 99.9 True local misassembly 25868389 25880818 25455 13027 NC_060941.1 JAKCWS010000016.1 99.9 True local misassembly 25861476 25871103 35083 25456 NC_060941.1 JAKCWS010000016.1 99.9 True fake: not a misassembly (possible transposable element) 25829526 25836491 52098 45133 NC_060941.1 JAKCWS010000016.1 99.89 True fake: not a misassembly (possible transposable element) 25835186 25837670 54583 52099 NC_060941.1 JAKCWS010000016.1 99.94 True indel: stretch of mismatches 25825632 25835185 64137 54584 NC_060941.1 JAKCWS010000016.1 99.96 True relocation, inconsistency = -10860 25824096 25836491 76701 64138 NC_060941.1 JAKCWS010000016.1 98.51 True local misassembly 25825632 25826810 77880 76702 NC_060941.1 JAKCWS010000016.1 98.08 True relocation, inconsistency = -10860 25824096 25836491 90444 77881 NC_060941.1 JAKCWS010000016.1 98.51 True local misassembly 25824096 25829525 95874 90445 NC_060941.1 JAKCWS010000016.1 99.8 True relocation, inconsistency = 29530 25782314 25794146 108126 96294 NC_060941.1 JAKCWS010000016.1 99.85 True indel: stretch of mismatches 25775561 25782313 114879 108127 NC_060941.1 JAKCWS010000016.1 99.93 True local misassembly 25770131 25775677 123024 117478 NC_060941.1 JAKCWS010000016.1 99.89 True local misassembly 25761986 25768959 131169 124196 NC_060941.1 JAKCWS010000016.1 99.84 True relocation, inconsistency = -234173 25983000 25990309 144328 137019 NC_060941.1 JAKCWS010000016.1 99.9 True relocation, inconsistency = 242485 25731164 25739045 153679 145798 NC_060941.1 JAKCWS010000016.1 99.9 True local misassembly 25731164 25736927 159443 153680 NC_060941.1 JAKCWS010000016.1 99.9 True relocation, inconsistency = 10860 25711223 25719646 168524 160101 NC_060941.1 JAKCWS010000016.1 99.87 True local misassembly 25714574 25716652 170603 168525 NC_060941.1 JAKCWS010000016.1 99.84 True local misassembly 25710027 25719646 180580 170961 NC_060941.1 JAKCWS010000016.1 99.9 True local misassembly 25699168 25706013 191440 184595 NC_060941.1 JAKCWS010000016.1 99.85 True local misassembly 25688308 25696022 199585 191871 NC_060941.1 JAKCWS010000016.1 99.78 True relocation, inconsistency = -1352180 26992994 26998000 247078 242073 NC_060941.1 JAKCWS010000016.1 98.28 True relocation, inconsistency = 916926 26066790 26071986 256356 251160 NC_060941.1 JAKCWS010000016.1 99.87 True local misassembly 26066790 26071986 261786 256590 NC_060941.1 JAKCWS010000016.1 99.87 True local misassembly 26066790 26069504 264501 261787 NC_060941.1 JAKCWS010000016.1 99.87 True local misassembly 26068191 26071986 268530 264735 NC_060941.1 JAKCWS010000016.1 99.87 True indel: stretch of mismatches 26062939 26068190 273782 268531 NC_060941.1 JAKCWS010000016.1 99.77 True relocation, inconsistency = 342945 25711223 25716872 282548 276904 NC_060941.1 JAKCWS010000016.1 99.75 True local misassembly 25711443 25716652 287753 282549 NC_060941.1 JAKCWS010000016.1 99.75 True local misassembly 25711223 25716872 293398 287754 NC_060941.1 JAKCWS010000016.1 99.75 True relocation, inconsistency = 359422 25343656 25351077 301538 294122 NC_060941.1 JAKCWS010000016.1 99.57 True CONTIG JAKCWS010000016.1 339362 misassembled 26402625 26404032 1240 1 NC_060941.1 JAKCWS010000017.1 97.94 True local misassembly 26389639 26399909 11511 1241 NC_060941.1 JAKCWS010000017.1 99.78 True relocation, inconsistency = 21720 26346023 26367918 33407 11512 NC_060941.1 JAKCWS010000017.1 99.84 True relocation, inconsistency = -27150 26367919 26373172 38661 33408 NC_060941.1 JAKCWS010000017.1 99.92 True relocation, inconsistency = -32580 26388647 26400498 50513 38662 NC_060941.1 JAKCWS010000017.1 99.84 True relocation, inconsistency = 19005 26366650 26369641 53505 50514 NC_060941.1 JAKCWS010000017.1 99.92 True local misassembly 26354390 26361219 60335 53506 NC_060941.1 JAKCWS010000017.1 99.65 True relocation, inconsistency = -162396 26498211 26516785 78910 60336 NC_060941.1 JAKCWS010000017.1 99.84 True local misassembly 26487767 26492350 83924 79341 NC_060941.1 JAKCWS010000017.1 99.8 True local misassembly 26479789 26485051 89354 83925 NC_060941.1 JAKCWS010000017.1 98.29 True local misassembly 26465998 26485051 108575 89355 NC_060941.1 JAKCWS010000017.1 99.03 True local misassembly 26455306 26463282 116384 108576 NC_060941.1 JAKCWS010000017.1 98.19 True relocation, inconsistency = -10524 26455306 26465481 126740 116733 NC_060941.1 JAKCWS010000017.1 98.15 True local misassembly 26452164 26457504 132429 127089 NC_060941.1 JAKCWS010000017.1 99.8 True local misassembly 26449449 26457593 140572 132430 NC_060941.1 JAKCWS010000017.1 99.86 True local misassembly 26435874 26454878 159577 140573 NC_060941.1 JAKCWS010000017.1 99.91 True indel: stretch of mismatches 26411868 26435873 183416 159578 NC_060941.1 JAKCWS010000017.1 99.16 True relocation, inconsistency = 13575 26388647 26398292 193062 183417 NC_060941.1 JAKCWS010000017.1 99.78 True indel: stretch of mismatches 26382992 26388646 198717 193063 NC_060941.1 JAKCWS010000017.1 99.95 True CONTIG JAKCWS010000017.1 198717 misassembled 26614621 26642303 27683 1 NC_060941.1 JAKCWS010000018.1 99.87 True local misassembly 26610948 26620050 36786 27684 NC_060941.1 JAKCWS010000018.1 99.89 True indel: stretch of mismatches 26607447 26610947 40287 36787 NC_060941.1 JAKCWS010000018.1 99.91 True relocation, inconsistency = -21720 26623295 26629166 46159 40288 NC_060941.1 JAKCWS010000018.1 99.83 True relocation, inconsistency = 16290 26583367 26607004 69797 46160 NC_060941.1 JAKCWS010000018.1 98.45 True local misassembly 26544199 26577506 103534 70228 NC_060941.1 JAKCWS010000018.1 99.88 True relocation, inconsistency = -51417 26592638 26595185 106512 103965 NC_060941.1 JAKCWS010000018.1 97.56 True relocation, inconsistency = 46154 26541257 26546483 111739 106513 NC_060941.1 JAKCWS010000018.1 99.93 True indel: stretch of mismatches 26538542 26541256 114454 111740 NC_060941.1 JAKCWS010000018.1 99.82 True local misassembly 26500926 26535826 149355 114455 NC_060941.1 JAKCWS010000018.1 99.91 True local misassembly 26498211 26503640 154785 149356 NC_060941.1 JAKCWS010000018.1 99.87 True relocation, inconsistency = -48703 26541257 26546483 160442 155216 NC_060941.1 JAKCWS010000018.1 99.88 True local misassembly 26504786 26535826 191483 160443 NC_060941.1 JAKCWS010000018.1 99.93 True CONTIG JAKCWS010000018.1 191483 misassembled 26332448 26354989 22542 1 NC_060941.1 JAKCWS010000019.1 99.82 True relocation, inconsistency = 62445 26264829 26270002 27718 22543 NC_060941.1 JAKCWS010000019.1 99.71 True indel: stretch of mismatches 26246387 26264828 46328 27719 NC_060941.1 JAKCWS010000019.1 98.92 True relocation, inconsistency = 57015 26181519 26189233 54181 46467 NC_060941.1 JAKCWS010000019.1 99.81 True relocation, inconsistency = -360424 26525258 26531518 70866 64606 NC_060941.1 JAKCWS010000019.1 99.7 True relocation, inconsistency = -78400 26598744 26603657 75780 70867 NC_060941.1 JAKCWS010000019.1 99.79 True CONTIG JAKCWS010000019.1 97493 misassembled 163997 259093 8277 103495 NC_060942.1 CM039051.1 99.37 True indel: indel (> 5bp) 259372 260550 103761 104939 NC_060942.1 CM039051.1 99.15 True local misassembly 261027 262338 104940 106251 NC_060942.1 CM039051.1 98.78 True local misassembly 262339 263232 106662 107555 NC_060942.1 CM039051.1 99.78 True local misassembly 263529 821220 108192 666571 NC_060942.1 CM039051.1 99.53 True indel: stretch of mismatches 821626 1910167 666977 1755187 NC_060942.1 CM039051.1 99.76 True indel: indel (<= 5bp) 1910445 2117678 1755461 1962609 NC_060942.1 CM039051.1 99.77 True local misassembly 2118035 4671628 1962707 4517179 NC_060942.1 CM039051.1 99.73 True local misassembly 4672741 7304933 4519881 7153758 NC_060942.1 CM039051.1 99.76 True local misassembly 7307506 14712327 7153759 14547895 NC_060942.1 CM039051.1 99.6 True translocation 11947166 11948236 14548979 14547896 NC_060945.1 CM039051.1 97.07 True translocation 14712269 15580973 14548980 15417545 NC_060942.1 CM039051.1 99.9 True local misassembly 15577216 15766646 15417546 15606971 NC_060942.1 CM039051.1 98.82 True relocation, inconsistency = 171127 15937774 15942466 15606972 15611665 NC_060942.1 CM039051.1 97.45 True relocation, inconsistency = -124188 15819573 15821986 15612960 15615373 NC_060942.1 CM039051.1 98.87 True local misassembly 15827090 15851725 15615374 15640010 NC_060942.1 CM039051.1 98.93 True local misassembly 15848325 15942466 15640011 15734142 NC_060942.1 CM039051.1 98.99 True local misassembly 15935664 15941237 15734143 15739727 NC_060942.1 CM039051.1 98.94 True relocation, inconsistency = -86768 15854470 15931170 15739728 15816912 NC_060942.1 CM039051.1 97.76 True relocation, inconsistency = -54962 15876209 15942466 15816913 15883136 NC_060942.1 CM039051.1 97.51 True indel: indel (<= 5bp) 15942934 15944515 15883605 15885185 NC_060942.1 CM039051.1 95.33 True local misassembly 15941982 15952059 15886050 15896127 NC_060942.1 CM039051.1 99.95 True local misassembly 15946377 15971859 15897249 15922731 NC_060942.1 CM039051.1 99.95 True indel: indel (<= 5bp) 15971860 15973808 15922733 15924681 NC_060942.1 CM039051.1 99.69 True local misassembly 15973809 15978954 15927049 15932194 NC_060942.1 CM039051.1 98.43 True indel: indel (<= 5bp) 15978956 15980646 15932195 15933885 NC_060942.1 CM039051.1 97.63 True indel: indel (<= 5bp) 15980647 15982337 15933887 15935577 NC_060942.1 CM039051.1 97.81 True indel: indel (<= 5bp) 15982339 15984029 15935578 15937268 NC_060942.1 CM039051.1 98.46 True indel: indel (<= 5bp) 15984030 15985609 15937270 15938849 NC_060942.1 CM039051.1 98.1 True indel: indel (<= 5bp) 15985611 15986279 15938850 15939518 NC_060942.1 CM039051.1 96.86 True indel: indel (<= 5bp) 15986280 15988993 15939520 15942233 NC_060942.1 CM039051.1 99.15 True indel: indel (<= 5bp) 15988994 15989662 15942235 15942903 NC_060942.1 CM039051.1 98.95 True indel: indel (<= 5bp) 15989664 15997364 15942904 15950604 NC_060942.1 CM039051.1 99.31 True local misassembly 15995987 15997364 15951261 15952638 NC_060942.1 CM039051.1 97.82 True indel: indel (<= 5bp) 15997609 16007050 15952887 15962328 NC_060942.1 CM039051.1 99.81 True local misassembly 16008871 16083814 15964149 16039434 NC_060942.1 CM039051.1 99.24 True relocation, inconsistency = -23391 16060424 16104052 16039435 16083069 NC_060942.1 CM039051.1 99.3 True relocation, inconsistency = 52553 16156606 16159078 16083070 16085200 NC_060942.1 CM039051.1 95.05 True local misassembly 16158376 16161768 16085515 16088907 NC_060942.1 CM039051.1 98.99 True local misassembly 16162444 16199571 16088908 16126042 NC_060942.1 CM039051.1 95.4 True relocation, inconsistency = 7786 16207358 16212573 16126043 16131258 NC_060942.1 CM039051.1 99.67 True relocation, inconsistency = 13893 16226467 16240625 16131259 16145418 NC_060942.1 CM039051.1 99.18 True relocation, inconsistency = -12192 16228434 16229852 16145419 16146837 NC_060942.1 CM039051.1 99.75 True local misassembly 16228160 16239333 16146838 16158012 NC_060942.1 CM039051.1 99.48 True relocation, inconsistency = 23367 16262701 16286684 16158013 16181994 NC_060942.1 CM039051.1 99.28 True relocation, inconsistency = -44366 16242319 16248140 16181995 16187816 NC_060942.1 CM039051.1 99.0 True local misassembly 16253893 16267378 16187817 16201302 NC_060942.1 CM039051.1 98.94 True relocation, inconsistency = 22691 16290070 16295215 16201303 16206448 NC_060942.1 CM039051.1 99.82 True local misassembly 16298945 16316007 16206449 16223512 NC_060942.1 CM039051.1 99.78 True local misassembly 16312615 16318157 16223513 16229055 NC_060942.1 CM039051.1 99.86 True local misassembly 16323926 16334766 16229056 16239896 NC_060942.1 CM039051.1 99.65 True local misassembly 16330363 16344144 16239897 16253679 NC_060942.1 CM039051.1 99.61 True relocation, inconsistency = 8509 16352654 16356885 16253680 16257911 NC_060942.1 CM039051.1 99.31 True local misassembly 16358916 16374091 16257912 16272745 NC_060942.1 CM039051.1 97.56 True local misassembly 16368835 16373388 16272746 16277299 NC_060942.1 CM039051.1 99.94 True local misassembly 16376784 16394739 16277300 16295255 NC_060942.1 CM039051.1 99.84 True local misassembly 16389650 16399446 16295256 16305053 NC_060942.1 CM039051.1 99.7 True relocation, inconsistency = 538192 16937639 16945333 16305054 16312747 NC_060942.1 CM039051.1 99.6 True relocation, inconsistency = -542602 16402732 16414531 16312748 16324546 NC_060942.1 CM039051.1 99.78 True local misassembly 16419277 16423417 16324547 16329025 NC_060942.1 CM039051.1 96.0 True local misassembly 16422063 16433873 16329026 16340836 NC_060942.1 CM039051.1 99.8 True indel: stretch of mismatches 16433874 16475339 16340837 16382302 NC_060942.1 CM039051.1 99.83 True relocation, inconsistency = 340866 16816206 16853316 16382303 16419419 NC_060942.1 CM039051.1 99.67 True relocation, inconsistency = -415481 16437836 16443831 16419420 16425415 NC_060942.1 CM039051.1 99.7 True indel: stretch of mismatches 16443995 16453147 16425579 16435069 NC_060942.1 CM039051.1 97.44 True relocation, inconsistency = 363593 16816741 16848123 16435070 16466452 NC_060942.1 CM039051.1 99.63 True relocation, inconsistency = -374786 16473338 16479017 16466453 16472131 NC_060942.1 CM039051.1 99.79 True relocation, inconsistency = -13561 16465457 16475289 16472132 16481964 NC_060942.1 CM039051.1 99.5 True relocation, inconsistency = -13903 16461387 16478425 16481965 16499003 NC_060942.1 CM039051.1 99.43 True relocation, inconsistency = 11184 16489869 16498767 16499263 16508160 NC_060942.1 CM039051.1 99.46 True local misassembly 16493680 16498512 16508161 16512822 NC_060942.1 CM039051.1 96.5 True local misassembly 16499188 16503750 16512823 16517385 NC_060942.1 CM039051.1 99.71 True local misassembly 16501716 16535158 16517386 16550828 NC_060942.1 CM039051.1 99.78 True local misassembly 16538216 16543177 16550829 16555790 NC_060942.1 CM039051.1 99.68 True relocation, inconsistency = -24434 16518744 16530695 16555791 16567742 NC_060942.1 CM039051.1 99.66 True relocation, inconsistency = -9161 16521535 16528901 16567743 16574767 NC_060942.1 CM039051.1 96.23 True relocation, inconsistency = 27487 16556707 16560104 16575086 16578483 NC_060942.1 CM039051.1 99.83 True local misassembly 16562814 16592398 16578484 16608409 NC_060942.1 CM039051.1 98.7 True relocation, inconsistency = -170915 16421484 16428864 16608410 16615790 NC_060942.1 CM039051.1 99.68 True relocation, inconsistency = 168880 16597837 16613092 16615883 16631138 NC_060942.1 CM039051.1 99.79 True relocation, inconsistency = -9835 16603258 16606046 16631139 16633927 NC_060942.1 CM039051.1 99.58 True relocation, inconsistency = 1168338 17774521 17784688 16634064 16643889 NC_060942.1 CM039051.1 96.06 True relocation, inconsistency = -1154581 16630372 16632492 16644154 16646274 NC_060942.1 CM039051.1 99.91 True local misassembly 16629440 16650778 16646275 16667954 NC_060942.1 CM039051.1 98.19 True local misassembly 16645685 16656247 16667955 16678517 NC_060942.1 CM039051.1 99.85 True relocation, inconsistency = 602752 17259000 17274204 16678518 16693724 NC_060942.1 CM039051.1 99.36 True relocation, inconsistency = -10506 17263699 17271732 16693725 16701760 NC_060942.1 CM039051.1 99.25 True relocation, inconsistency = -602755 16671220 16678848 16704003 16711631 NC_060942.1 CM039051.1 99.79 True fake: not a misassembly (possible transposable element) 16505852 16507742 16711632 16713522 NC_060942.1 CM039051.1 99.37 True fake: not a misassembly (possible transposable element) 16676328 16687186 16713523 16724381 NC_060942.1 CM039051.1 99.78 True local misassembly 16689564 16718033 16724382 16752850 NC_060942.1 CM039051.1 99.9 True relocation, inconsistency = 11523 16729557 16735523 16752851 16758817 NC_060942.1 CM039051.1 99.72 True local misassembly 16733489 16753919 16758818 16779249 NC_060942.1 CM039051.1 99.91 True local misassembly 16754599 16813246 16779250 16837898 NC_060942.1 CM039051.1 99.85 True local misassembly 16815282 16826154 16837899 16848771 NC_060942.1 CM039051.1 99.84 True local misassembly 16830225 16864759 16848772 16883306 NC_060942.1 CM039051.1 99.87 True local misassembly 16866795 16876407 16883307 16892919 NC_060942.1 CM039051.1 99.77 True relocation, inconsistency = 80671 16957079 16969154 16892920 16904993 NC_060942.1 CM039051.1 99.73 True relocation, inconsistency = -74570 16894585 16928823 16904994 16939235 NC_060942.1 CM039051.1 99.82 True local misassembly 16922048 16948662 16939236 16966527 NC_060942.1 CM039051.1 97.62 True relocation, inconsistency = -9489 16939174 16947654 16966528 16975008 NC_060942.1 CM039051.1 99.8 True relocation, inconsistency = -41349 16906306 16927408 16975009 16996114 NC_060942.1 CM039051.1 99.63 True relocation, inconsistency = 770517 17697926 17701093 16996115 16999283 NC_060942.1 CM039051.1 99.59 True relocation, inconsistency = -737287 16963807 16982366 16999284 17017843 NC_060942.1 CM039051.1 99.81 True local misassembly 16980332 16986163 17017844 17023675 NC_060942.1 CM039051.1 99.83 True local misassembly 16988199 17004741 17023676 17040218 NC_060942.1 CM039051.1 99.78 True local misassembly 17003049 17023649 17040219 17061159 NC_060942.1 CM039051.1 98.1 True relocation, inconsistency = -7128 17017226 17033625 17061864 17078265 NC_060942.1 CM039051.1 99.53 True local misassembly 17034986 17064055 17078266 17107338 NC_060942.1 CM039051.1 97.59 True relocation, inconsistency = -362493 16701563 16703572 17107339 17109348 NC_060942.1 CM039051.1 97.18 True local misassembly 16699503 16705480 17109349 17115325 NC_060942.1 CM039051.1 99.47 True relocation, inconsistency = 467421 17172902 17179820 17115326 17122244 NC_060942.1 CM039051.1 99.51 True relocation, inconsistency = 171980 17351801 17373005 17122245 17143449 NC_060942.1 CM039051.1 99.84 True relocation, inconsistency = -293186 17079820 17090462 17143450 17154093 NC_060942.1 CM039051.1 99.65 True relocation, inconsistency = 11523 17101986 17115557 17154094 17167665 NC_060942.1 CM039051.1 99.91 True local misassembly 17117593 17155562 17167666 17205636 NC_060942.1 CM039051.1 99.92 True relocation, inconsistency = 252522 17408085 17433526 17205637 17231077 NC_060942.1 CM039051.1 99.71 True relocation, inconsistency = -244208 17189319 17200271 17231078 17242030 NC_060942.1 CM039051.1 99.76 True relocation, inconsistency = 254382 17454654 17458901 17242031 17246277 NC_060942.1 CM039051.1 99.58 True local misassembly 17460262 17462916 17246278 17248932 NC_060942.1 CM039051.1 99.54 True relocation, inconsistency = -259812 17203105 17225273 17248933 17270759 NC_060942.1 CM039051.1 98.31 True relocation, inconsistency = -13914 17211360 17213971 17270760 17273371 NC_060942.1 CM039051.1 99.35 True local misassembly 17217025 17227287 17273372 17283976 NC_060942.1 CM039051.1 96.11 True fake: not a misassembly (possible transposable element) 17785369 17790405 17283977 17289009 NC_060942.1 CM039051.1 99.24 True fake: not a misassembly (possible transposable element) 17231217 17245179 17289268 17303225 NC_060942.1 CM039051.1 99.86 True local misassembly 17243145 17244140 17303226 17304221 NC_060942.1 CM039051.1 99.88 True relocation, inconsistency = 328312 17575372 17584441 17307141 17316210 NC_060942.1 CM039051.1 99.88 True relocation, inconsistency = -331708 17252734 17257156 17316211 17320633 NC_060942.1 CM039051.1 99.7 True relocation, inconsistency = -8139 17251883 17257156 17323499 17328772 NC_060942.1 CM039051.1 99.7 True relocation, inconsistency = 341045 17598692 17605629 17329263 17336205 NC_060942.1 CM039051.1 99.07 True relocation, inconsistency = -351218 17254412 17270057 17336206 17351851 NC_060942.1 CM039051.1 99.63 True local misassembly 17265087 17268664 17351962 17355541 NC_060942.1 CM039051.1 99.19 True relocation, inconsistency = 9837 17278502 17282814 17355542 17359854 NC_060942.1 CM039051.1 99.13 True local misassembly 17278403 17296153 17359855 17377604 NC_060942.1 CM039051.1 99.91 True relocation, inconsistency = -248748 17047406 17053749 17377605 17383606 NC_060942.1 CM039051.1 97.59 True local misassembly 17049338 17071988 17383607 17406258 NC_060942.1 CM039051.1 99.68 True relocation, inconsistency = -12208 17060439 17071988 17406917 17418467 NC_060942.1 CM039051.1 99.53 True relocation, inconsistency = -12208 17060439 17069970 17419126 17428657 NC_060942.1 CM039051.1 99.63 True relocation, scaffold gap is present, inconsistency = 2151206 19227835 19232246 17435316 17439727 NC_060942.1 CM039051.1 99.87 True local misassembly 19227835 19234368 17439728 17446261 NC_060942.1 CM039051.1 99.82 True relocation, inconsistency = 53571 19288257 19290323 17446579 17448645 NC_060942.1 CM039051.1 99.76 True relocation, inconsistency = -64772 19229870 19234246 17452964 17457340 NC_060942.1 CM039051.1 99.91 True relocation, inconsistency = -1489680 17752337 17756114 17465111 17468888 NC_060942.1 CM039051.1 98.31 True local misassembly 17756115 17756973 17469231 17470089 NC_060942.1 CM039051.1 98.37 True relocation, inconsistency = 1171920 18929741 18936996 17470937 17478192 NC_060942.1 CM039051.1 99.85 True relocation, inconsistency = 336393 19283445 19287950 17488248 17492753 NC_060942.1 CM039051.1 99.84 True relocation, inconsistency = -1541900 17752337 17756114 17499040 17502817 NC_060942.1 CM039051.1 98.31 True local misassembly 17756115 17756973 17503160 17504018 NC_060942.1 CM039051.1 98.37 True relocation, inconsistency = 1171920 18929741 18931355 17504866 17506480 NC_060942.1 CM039051.1 99.9 True relocation, inconsistency = 419836 19351192 19364721 17506481 17520010 NC_060942.1 CM039051.1 99.93 True relocation, inconsistency = 42070 19406792 19410785 17520011 17524004 NC_060942.1 CM039051.1 99.63 True relocation, inconsistency = -20350 19390547 19396189 17524116 17529758 NC_060942.1 CM039051.1 99.83 True relocation, inconsistency = 8140 19404330 19417008 17529759 17542437 NC_060942.1 CM039051.1 99.81 True indel: stretch of mismatches 19417246 19426489 17542675 17551916 NC_060942.1 CM039051.1 99.83 True relocation, inconsistency = 42033 19468523 19480701 17551917 17564095 NC_060942.1 CM039051.1 99.76 True relocation, inconsistency = -43052 19437650 19444428 17564096 17570872 NC_060942.1 CM039051.1 99.92 True local misassembly 19438342 19444428 17570890 17576974 NC_060942.1 CM039051.1 99.92 True relocation, inconsistency = 9500 19454621 19459903 17577667 17582949 NC_060942.1 CM039051.1 99.91 True relocation, inconsistency = 7797 19468523 19474141 17583772 17589391 NC_060942.1 CM039051.1 99.82 True local misassembly 19479772 19483841 17589604 17593673 NC_060942.1 CM039051.1 99.97 True indel: stretch of mismatches 19483842 19496990 17593674 17606822 NC_060942.1 CM039051.1 99.86 True local misassembly 19501736 19507459 17606823 17612547 NC_060942.1 CM039051.1 99.85 True relocation, inconsistency = -62042 19445418 19446480 17612548 17613609 NC_060942.1 CM039051.1 99.84 True relocation, inconsistency = 47123 19493604 19500680 17613610 17620686 NC_060942.1 CM039051.1 99.92 True fake: not a misassembly (possible transposable element) 18909273 18910335 17620687 17621748 NC_060942.1 CM039051.1 99.87 True fake: not a misassembly (possible transposable element) 19495639 19498777 17621749 17624887 NC_060942.1 CM039051.1 99.85 True relocation, inconsistency = -48816 19449962 19454620 17624888 17629545 NC_060942.1 CM039051.1 99.65 True fake: not a misassembly (possible transposable element) 19520048 19525089 17629546 17634587 NC_060942.1 CM039051.1 99.88 True fake: not a misassembly (possible transposable element) 19461698 19462760 17634588 17635649 NC_060942.1 CM039051.1 99.81 True relocation, inconsistency = 46437 19509198 19512320 17635650 17638772 NC_060942.1 CM039051.1 99.68 True local misassembly 19505541 19515941 17638773 17649173 NC_060942.1 CM039051.1 99.97 True indel: stretch of mismatches 19515942 19516740 17649174 17649972 NC_060942.1 CM039051.1 99.88 True fake: not a misassembly (possible transposable element) 19488262 19494946 17649973 17656657 NC_060942.1 CM039051.1 99.69 True fake: not a misassembly (possible transposable element) 19524082 19530431 17658674 17665023 NC_060942.1 CM039051.1 99.8 True local misassembly 19525306 19529395 17666003 17670092 NC_060942.1 CM039051.1 99.75 True relocation, inconsistency = 14245 19543641 19557842 17670093 17684292 NC_060942.1 CM039051.1 99.63 True local misassembly 19555808 19572130 17684293 17700615 NC_060942.1 CM039051.1 99.67 True relocation, inconsistency = -24420 19547711 19569140 17700616 17722044 NC_060942.1 CM039051.1 99.31 True fake: not a misassembly (possible transposable element) 19588138 19593656 17722045 17727563 NC_060942.1 CM039051.1 99.76 True fake: not a misassembly (possible transposable element) 19573633 19579062 17727564 17732993 NC_060942.1 CM039051.1 99.79 True local misassembly 19582457 19615908 17732994 17766446 NC_060942.1 CM039051.1 99.86 True local misassembly 19610470 19619595 17766447 17775569 NC_060942.1 CM039051.1 99.33 True relocation, inconsistency = -7816 19611780 19614577 17775570 17778367 NC_060942.1 CM039051.1 98.47 True local misassembly 19616454 19618785 17779911 17782242 NC_060942.1 CM039051.1 99.24 True local misassembly 19617426 19627117 17782243 17791934 NC_060942.1 CM039051.1 99.56 True local misassembly 19625758 19642608 17791935 17808784 NC_060942.1 CM039051.1 99.54 True relocation, inconsistency = -65888 19576721 19582658 17808785 17814723 NC_060942.1 CM039051.1 99.3 True local misassembly 19586053 19587256 17814724 17815928 NC_060942.1 CM039051.1 98.99 True relocation, inconsistency = 56387 19643644 19650979 17815929 17823264 NC_060942.1 CM039051.1 99.46 True local misassembly 19649622 19671173 17823265 17844818 NC_060942.1 CM039051.1 99.5 True relocation, inconsistency = 133426 19804600 19817883 17844819 17858377 NC_060942.1 CM039051.1 96.96 True local misassembly 19813815 19814641 17858378 17859204 NC_060942.1 CM039051.1 98.92 True relocation, inconsistency = -8137 19806505 19821962 17859205 17874663 NC_060942.1 CM039051.1 99.18 True local misassembly 19823125 19836236 17875830 17888598 NC_060942.1 CM039051.1 97.03 True relocation, inconsistency = -149791 19686446 19689126 17888599 17891278 NC_060942.1 CM039051.1 98.07 True relocation, inconsistency = -9843 19679284 19684212 17891279 17896207 NC_060942.1 CM039051.1 99.24 True relocation, inconsistency = 62128 19746341 19751970 17896208 17901837 NC_060942.1 CM039051.1 99.76 True local misassembly 19757411 19769527 17901838 17914295 NC_060942.1 CM039051.1 97.44 True relocation, inconsistency = -119895 19649633 19669772 17914296 17934438 NC_060942.1 CM039051.1 99.1 True relocation, inconsistency = 107642 19777630 19792049 17934654 17949073 NC_060942.1 CM039051.1 99.54 True local misassembly 19796472 19803526 17949074 17956128 NC_060942.1 CM039051.1 99.69 True local misassembly 19804887 19813321 17956129 17964563 NC_060942.1 CM039051.1 99.2 True local misassembly 19811287 19835247 17964564 17988181 NC_060942.1 CM039051.1 98.16 True relocation, inconsistency = -54018 19781230 19783368 17988182 17990320 NC_060942.1 CM039051.1 98.97 True relocation, inconsistency = 26859 19810228 19813321 17990321 17993412 NC_060942.1 CM039051.1 98.68 True local misassembly 19811287 19828115 17993413 18010240 NC_060942.1 CM039051.1 99.39 True relocation, inconsistency = -130762 19697354 19702039 18010241 18014926 NC_060942.1 CM039051.1 99.33 True relocation, inconsistency = -22756 19679284 19681303 18014927 18016946 NC_060942.1 CM039051.1 99.67 True relocation, inconsistency = -7122 19674182 19684688 18016947 18027454 NC_060942.1 CM039051.1 99.42 True relocation, inconsistency = -10517 19674172 19688569 18027455 18041853 NC_060942.1 CM039051.1 99.37 True local misassembly 19689930 19692861 18041854 18044785 NC_060942.1 CM039051.1 99.82 True local misassembly 19692862 19696988 18045804 18049930 NC_060942.1 CM039051.1 99.59 True indel: indel (<= 5bp) 19696990 19699017 18049931 18051958 NC_060942.1 CM039051.1 99.95 True relocation, inconsistency = 24457 19723953 19735724 18052437 18064207 NC_060942.1 CM039051.1 99.65 True relocation, inconsistency = 37013 19772738 19778852 18064208 18070322 NC_060942.1 CM039051.1 99.38 True local misassembly 19779159 19783092 18070962 18074895 NC_060942.1 CM039051.1 98.95 True local misassembly 19785136 19788515 18074896 18078275 NC_060942.1 CM039051.1 98.78 True relocation, inconsistency = -10886 19777630 19782130 18078276 18082776 NC_060942.1 CM039051.1 99.6 True local misassembly 19785533 19818272 18082777 18115513 NC_060942.1 CM039051.1 99.48 True local misassembly 19816238 19820071 18115514 18119347 NC_060942.1 CM039051.1 99.35 True local misassembly 19818037 19824720 18119348 18126031 NC_060942.1 CM039051.1 98.74 True fake: not a misassembly (possible transposable element) 19792275 19798004 18126523 18132252 NC_060942.1 CM039051.1 99.36 True fake: not a misassembly (possible transposable element) 19833995 19841469 18132253 18139727 NC_060942.1 CM039051.1 99.8 True relocation, inconsistency = -7475 19833995 19851889 18139728 18157622 NC_060942.1 CM039051.1 99.66 True relocation, inconsistency = -171511 19680379 19683520 18157623 18160764 NC_060942.1 CM039051.1 99.37 True relocation, inconsistency = 161668 19845189 19850794 18160765 18166370 NC_060942.1 CM039051.1 99.4 True local misassembly 19845707 19861838 18166371 18182502 NC_060942.1 CM039051.1 99.52 True relocation, inconsistency = 12905 19874744 19876645 18182503 18184404 NC_060942.1 CM039051.1 99.05 True relocation, inconsistency = -142993 19733653 19736363 18184405 18187115 NC_060942.1 CM039051.1 98.47 True relocation, inconsistency = 117192 19853556 19868199 18187116 18201759 NC_060942.1 CM039051.1 99.82 True local misassembly 19872270 19877616 18201760 18207106 NC_060942.1 CM039051.1 99.38 True local misassembly 19876599 19880750 18207107 18211258 NC_060942.1 CM039051.1 99.38 True local misassembly 19874645 19881350 18211259 18217622 NC_060942.1 CM039051.1 96.47 True local misassembly 19882711 19910334 18217623 18245249 NC_060942.1 CM039051.1 99.3 True local misassembly 19905683 19912137 18245694 18252149 NC_060942.1 CM039051.1 98.86 True local misassembly 19905683 19946796 18252150 18293262 NC_060942.1 CM039051.1 99.32 True relocation, inconsistency = 8160 19954957 19981696 18293263 18320000 NC_060942.1 CM039051.1 99.41 True relocation, inconsistency = -10877 19970820 19976902 18320001 18326080 NC_060942.1 CM039051.1 99.07 True local misassembly 19981665 20013607 18326081 18358024 NC_060942.1 CM039051.1 99.53 True local misassembly 20014968 20016787 18358025 18359844 NC_060942.1 CM039051.1 99.44 True local misassembly 20017463 20021672 18359845 18364054 NC_060942.1 CM039051.1 99.18 True local misassembly 20015568 20019609 18364055 18368095 NC_060942.1 CM039051.1 99.52 True local misassembly 20017575 20035410 18368096 18385930 NC_060942.1 CM039051.1 99.4 True local misassembly 20036771 20046907 18385931 18396066 NC_060942.1 CM039051.1 99.18 True local misassembly 20050988 20074990 18396067 18420069 NC_060942.1 CM039051.1 99.58 True local misassembly 20070911 20076600 18420070 18425759 NC_060942.1 CM039051.1 99.7 True local misassembly 20080681 20100138 18425760 18445217 NC_060942.1 CM039051.1 99.47 True local misassembly 20106939 20115856 18445218 18454135 NC_060942.1 CM039051.1 99.34 True local misassembly 20117217 20136700 18454136 18473618 NC_060942.1 CM039051.1 99.62 True local misassembly 20135341 20150560 18473619 18488838 NC_060942.1 CM039051.1 98.95 True relocation, inconsistency = -17680 20132881 20140914 18488839 18496872 NC_060942.1 CM039051.1 98.58 True local misassembly 20135133 20144994 18496873 18506392 NC_060942.1 CM039051.1 96.3 True local misassembly 20151795 20178424 18506393 18533022 NC_060942.1 CM039051.1 99.39 True local misassembly 20174698 20184670 18533023 18542996 NC_060942.1 CM039051.1 98.38 True relocation, inconsistency = 13914 20198585 20202326 18542997 18546738 NC_060942.1 CM039051.1 99.72 True fake: not a misassembly (possible transposable element) 20181300 20182964 18548785 18550449 NC_060942.1 CM039051.1 99.69 True fake: not a misassembly (possible transposable element) 20203660 20211046 18550450 18557836 NC_060942.1 CM039051.1 99.88 True relocation, inconsistency = -21722 20189325 20192005 18557837 18560518 NC_060942.1 CM039051.1 99.05 True local misassembly 20194050 20195436 18560519 18561905 NC_060942.1 CM039051.1 99.63 True relocation, inconsistency = 18661 20214216 20220607 18562024 18568416 NC_060942.1 CM039051.1 99.37 True fake: not a misassembly (possible transposable element) 19699120 19704426 18568417 18573724 NC_060942.1 CM039051.1 98.48 True fake: not a misassembly (possible transposable element) 20228298 20231017 18573725 18576444 NC_060942.1 CM039051.1 97.94 True local misassembly 20228298 20268517 18576445 18616324 NC_060942.1 CM039051.1 96.79 True local misassembly 20271238 20282830 18616325 18627918 NC_060942.1 CM039051.1 99.52 True local misassembly 20284191 20299476 18627919 18643206 NC_060942.1 CM039051.1 99.25 True relocation, inconsistency = -67306 20232171 20236199 18643207 18647235 NC_060942.1 CM039051.1 98.52 True relocation, inconsistency = 58804 20295004 20302471 18647236 18654703 NC_060942.1 CM039051.1 98.27 True relocation, inconsistency = -23107 20279436 20284023 18654775 18659362 NC_060942.1 CM039051.1 98.49 True local misassembly 20279269 20282830 18659363 18662926 NC_060942.1 CM039051.1 98.55 True relocation, inconsistency = 12236 20295067 20319248 18662927 18687108 NC_060942.1 CM039051.1 99.69 True fake: not a misassembly (possible transposable element) 20223043 20225036 18687109 18688925 NC_060942.1 CM039051.1 96.67 True fake: not a misassembly (possible transposable element) 20315804 20346561 18688926 18720026 NC_060942.1 CM039051.1 98.5 True relocation, inconsistency = 317421 20663983 20667540 18720027 18723584 NC_060942.1 CM039051.1 99.0 True relocation, inconsistency = -326934 20340607 20360234 18723585 18743216 NC_060942.1 CM039051.1 99.3 True relocation, inconsistency = 8834 20369069 20383577 18743217 18757725 NC_060942.1 CM039051.1 99.9 True relocation, inconsistency = -756465 19627113 19628558 18757726 18759171 NC_060942.1 CM039051.1 99.11 True local misassembly 19628901 19633998 18759172 18764269 NC_060942.1 CM039051.1 99.29 True relocation, inconsistency = 758843 20392842 20398696 18764270 18770124 NC_060942.1 CM039051.1 99.37 True local misassembly 20401417 20416303 18770125 18785011 NC_060942.1 CM039051.1 99.47 True relocation, inconsistency = -132186 20284118 20300654 18785012 18801552 NC_060942.1 CM039051.1 98.85 True local misassembly 20296575 20299217 18801553 18804195 NC_060942.1 CM039051.1 98.78 True relocation, inconsistency = 121652 20420870 20437062 18804196 18820389 NC_060942.1 CM039051.1 99.56 True local misassembly 20433317 20433818 18820390 18820891 NC_060942.1 CM039051.1 98.59 True relocation, inconsistency = -122346 20311473 20315853 18820892 18825274 NC_060942.1 CM039051.1 97.95 True indel: indel (<= 5bp) 20316173 20319248 18825593 18828669 NC_060942.1 CM039051.1 98.38 True relocation, inconsistency = 21372 20340979 20344770 18829028 18832823 NC_060942.1 CM039051.1 97.95 True relocation, inconsistency = -530715 19814056 19816001 18832824 18834769 NC_060942.1 CM039051.1 98.59 True local misassembly 19814642 19818746 18834770 18838873 NC_060942.1 CM039051.1 98.4 True relocation, inconsistency = 403289 20222036 20228320 18838874 18845158 NC_060942.1 CM039051.1 98.54 True relocation, inconsistency = 323196 20552382 20555047 18846024 18848689 NC_060942.1 CM039051.1 98.42 True relocation, inconsistency = -2783392 17771656 17773559 18848690 18850593 NC_060942.1 CM039051.1 98.21 True relocation, inconsistency = 2668907 20442467 20456679 18850594 18864806 NC_060942.1 CM039051.1 99.82 True local misassembly 20452609 20463455 18864807 18875653 NC_060942.1 CM039051.1 99.74 True relocation, inconsistency = 11545 20475001 20478591 18875654 18879244 NC_060942.1 CM039051.1 99.36 True relocation, inconsistency = -574645 19904029 19906889 18879327 18882187 NC_060942.1 CM039051.1 95.84 True relocation, inconsistency = 583138 20490028 20514772 18882188 18906932 NC_060942.1 CM039051.1 99.64 True local misassembly 20512396 20513237 18906933 18907774 NC_060942.1 CM039051.1 98.84 True indel: indel (<= 5bp) 20513238 20514925 18907776 18909463 NC_060942.1 CM039051.1 98.99 True indel: indel (<= 5bp) 20514926 20516026 18909465 18910565 NC_060942.1 CM039051.1 98.82 True local misassembly 20516369 20517330 18910566 18911527 NC_060942.1 CM039051.1 98.86 True local misassembly 20514612 20515118 18911528 18912035 NC_060942.1 CM039051.1 99.16 True local misassembly 20508322 20518710 18912036 18922425 NC_060942.1 CM039051.1 99.43 True local misassembly 20513273 20525465 18922426 18934618 NC_060942.1 CM039051.1 99.29 True local misassembly 20530906 20555875 18934619 18959590 NC_060942.1 CM039051.1 99.36 True local misassembly 20557235 20572420 18959591 18975120 NC_060942.1 CM039051.1 96.01 True relocation, inconsistency = 52334 20624755 20703019 18975121 19053383 NC_060942.1 CM039051.1 98.55 True local misassembly 20696224 20724452 19053384 19081609 NC_060942.1 CM039051.1 99.18 True local misassembly 20727171 20732946 19081610 19087386 NC_060942.1 CM039051.1 99.32 True local misassembly 20738015 20741186 19087876 19091047 NC_060942.1 CM039051.1 99.91 True relocation, inconsistency = -18339 20722848 20735662 19091048 19103863 NC_060942.1 CM039051.1 99.32 True local misassembly 20738015 20747784 19104353 19114121 NC_060942.1 CM039051.1 99.88 True local misassembly 20748465 20751449 19114122 19117108 NC_060942.1 CM039051.1 97.85 True local misassembly 20747891 20784847 19117109 19154064 NC_060942.1 CM039051.1 99.95 True local misassembly 20790442 20810329 19154065 19174126 NC_060942.1 CM039051.1 98.65 True relocation, inconsistency = -56124 20754206 20784847 19174127 19205284 NC_060942.1 CM039051.1 97.67 True relocation, inconsistency = 69530 20854378 20866101 19205285 19217012 NC_060942.1 CM039051.1 99.7 True relocation, inconsistency = 27455 20893557 20895871 19217013 19219327 NC_060942.1 CM039051.1 98.67 True local misassembly 20896382 20897100 19219666 19220384 NC_060942.1 CM039051.1 98.89 True local misassembly 20897705 20900148 19220647 19223091 NC_060942.1 CM039051.1 98.69 True local misassembly 20900859 20902480 19223977 19225598 NC_060942.1 CM039051.1 98.52 True local misassembly 20902481 20904976 19225770 19228265 NC_060942.1 CM039051.1 98.84 True relocation, inconsistency = -18987 20886962 20892218 19229238 19234494 NC_060942.1 CM039051.1 97.71 True relocation, inconsistency = -26780 20865439 20907437 19234495 19276493 NC_060942.1 CM039051.1 99.07 True local misassembly 20901672 20911222 19276494 19286215 NC_060942.1 CM039051.1 98.81 True local misassembly 20909016 20949181 19286216 19326041 NC_060942.1 CM039051.1 96.68 True local misassembly 20949829 20952842 19326516 19329532 NC_060942.1 CM039051.1 95.99 True local misassembly 20956822 20961304 19333338 19337820 NC_060942.1 CM039051.1 95.34 True indel: indel (<= 5bp) 20961306 20962385 19337821 19338900 NC_060942.1 CM039051.1 95.74 True local misassembly 20969826 20970529 19347534 19348237 NC_060942.1 CM039051.1 95.82 True indel: stretch of mismatches 20970530 20975917 19348238 19353624 NC_060942.1 CM039051.1 96.44 True local misassembly 20983344 20995455 19361052 19373162 NC_060942.1 CM039051.1 97.28 True local misassembly 21001806 21002846 19380539 19381581 NC_060942.1 CM039051.1 96.07 True indel: stretch of mismatches 21003143 21087264 19381878 19466000 NC_060942.1 CM039051.1 99.89 True local misassembly 21087247 24517723 19467175 22897790 NC_060942.1 CM039051.1 99.85 True local misassembly 24518953 28049477 22897791 26428269 NC_060942.1 CM039051.1 99.87 True local misassembly 28051479 29785159 26431398 28165104 NC_060942.1 CM039051.1 99.84 True local misassembly 29785647 30680562 28165749 29059704 NC_060942.1 CM039051.1 99.7 True local misassembly 30680881 30746938 29060971 29126938 NC_060942.1 CM039051.1 97.62 True indel: indel (> 5bp) 30747029 35176434 29127061 33555798 NC_060942.1 CM039051.1 99.85 True indel: indel (> 5bp) 35176598 37272247 33555912 35652090 NC_060942.1 CM039051.1 99.78 True indel: stretch of mismatches 37272398 43804821 35652241 42185802 NC_060942.1 CM039051.1 99.83 True indel: indel (> 5bp) 43804860 47221547 42185823 45596452 NC_060942.1 CM039051.1 99.63 True relocation, inconsistency = -11836 47209712 48925773 45596453 47312540 NC_060942.1 CM039051.1 99.88 True indel: indel (> 5bp) 48925903 50651633 47312688 49038299 NC_060942.1 CM039051.1 99.85 True relocation, inconsistency = -7194 50651089 53289302 49044949 51681498 NC_060942.1 CM039051.1 99.78 True local misassembly 53289884 53631011 51681728 52022690 NC_060942.1 CM039051.1 99.58 True local misassembly 53632109 59089951 52024238 57480769 NC_060942.1 CM039051.1 99.65 True indel: indel (> 5bp) 59090152 60784227 57481039 59174310 NC_060942.1 CM039051.1 99.68 True indel: stretch of mismatches 60784295 62156658 59174378 60547119 NC_060942.1 CM039051.1 99.75 True indel: indel (> 5bp) 62156803 62173308 60547220 60563731 NC_060942.1 CM039051.1 99.75 True local misassembly 62175510 62210213 60565463 60600101 NC_060942.1 CM039051.1 99.2 True local misassembly 62210153 64751101 60601500 63142881 NC_060942.1 CM039051.1 99.77 True indel: indel (> 5bp) 64751269 64814771 63143038 63206508 NC_060942.1 CM039051.1 99.5 True indel: indel (> 5bp) 64815112 68428281 63206800 66827780 NC_060942.1 CM039051.1 99.52 True local misassembly 68429436 71420010 66829153 69821586 NC_060942.1 CM039051.1 99.73 True indel: indel (> 5bp) 71420183 72750397 69821838 71151818 NC_060942.1 CM039051.1 99.64 True indel: indel (> 5bp) 72750461 73193853 71151875 71595408 NC_060942.1 CM039051.1 99.77 True relocation, inconsistency = -12889 73188018 74589182 71602462 73000744 NC_060942.1 CM039051.1 99.47 True local misassembly 74589698 76814100 73001292 75225916 NC_060942.1 CM039051.1 99.8 True local misassembly 76814161 77348546 75227223 75761901 NC_060942.1 CM039051.1 99.19 True indel: indel (> 5bp) 77348972 78462558 75762304 76874634 NC_060942.1 CM039051.1 99.34 True local misassembly 78463815 78464623 76875977 76876785 NC_060942.1 CM039051.1 99.13 True indel: indel (> 5bp) 78464663 78465695 76876786 76877818 NC_060942.1 CM039051.1 99.13 True indel: indel (<= 5bp) 78465697 78466756 76877819 76878878 NC_060942.1 CM039051.1 99.43 True indel: indel (<= 5bp) 78466757 78471218 76878880 76883341 NC_060942.1 CM039051.1 99.8 True local misassembly 78471583 78472152 76883374 76883943 NC_060942.1 CM039051.1 99.82 True local misassembly 78473347 78886846 76887346 77305118 NC_060942.1 CM039051.1 97.96 True local misassembly 78889408 79248907 77308468 77667856 NC_060942.1 CM039051.1 99.64 True relocation, inconsistency = 9057 79260875 79906650 77670767 78295865 NC_060942.1 CM039051.1 95.84 True local misassembly 79907595 79922502 78297893 78312807 NC_060942.1 CM039051.1 99.25 True local misassembly 79922651 80045703 78313292 78434334 NC_060942.1 CM039051.1 97.38 True local misassembly 80046610 80539334 78434782 78929529 NC_060942.1 CM039051.1 99.15 True CONTIG CM039051.1 78934485 misassembled 18035563 18066511 30948 1 NC_060942.1 JAKCWS010000021.1 99.88 True relocation, inconsistency = 17305 18001985 18018257 47221 30949 NC_060942.1 JAKCWS010000021.1 99.87 True relocation, inconsistency = -16287 17917657 18018271 147835 47222 NC_060942.1 JAKCWS010000021.1 99.85 True relocation, inconsistency = 10175 17885942 17901124 169375 154193 NC_060942.1 JAKCWS010000021.1 99.89 True relocation, inconsistency = -12210 17887977 17898151 179550 169376 NC_060942.1 JAKCWS010000021.1 99.88 True relocation, inconsistency = -12210 17890997 17899089 188740 180648 NC_060942.1 JAKCWS010000021.1 99.89 True indel: stretch of mismatches 17879497 17890996 200240 188741 NC_060942.1 JAKCWS010000021.1 99.91 True local misassembly 17874717 17882891 208415 200241 NC_060942.1 JAKCWS010000021.1 99.86 True relocation, inconsistency = -16280 17876127 17890996 223283 208416 NC_060942.1 JAKCWS010000021.1 99.82 True relocation, inconsistency = -18314 17861522 17870599 256201 247125 NC_060942.1 JAKCWS010000021.1 99.79 True relocation, inconsistency = 29850 17819305 17826802 268568 261071 NC_060942.1 JAKCWS010000021.1 99.88 True local misassembly 17819538 17823374 272405 268569 NC_060942.1 JAKCWS010000021.1 99.95 True indel: stretch of mismatches 17809667 17819537 282276 272406 NC_060942.1 JAKCWS010000021.1 99.89 True indel: stretch of mismatches 17804212 17809666 287731 282277 NC_060942.1 JAKCWS010000021.1 99.81 True fake: not a misassembly (possible transposable element) 18785813 18790303 292222 287732 NC_060942.1 JAKCWS010000021.1 99.68 True fake: not a misassembly (possible transposable element) 17789626 17799028 301636 292234 NC_060942.1 JAKCWS010000021.1 99.86 True relocation, inconsistency = -7802 17793707 17797427 305357 301637 NC_060942.1 JAKCWS010000021.1 99.77 True local misassembly 17772492 17793022 325888 305358 NC_060942.1 JAKCWS010000021.1 99.72 True local misassembly 17767056 17768421 327254 325889 NC_060942.1 JAKCWS010000021.1 99.71 True indel: stretch of mismatches 17760140 17767055 334170 327255 NC_060942.1 JAKCWS010000021.1 99.87 True indel: stretch of mismatches 17755422 17760139 338888 334171 NC_060942.1 JAKCWS010000021.1 99.9 True local misassembly 17749141 17753386 343134 338889 NC_060942.1 JAKCWS010000021.1 99.87 True relocation, inconsistency = -7123 17734335 17756263 365061 343135 NC_060942.1 JAKCWS010000021.1 99.57 True relocation, inconsistency = 538420 17194810 17195914 366166 365062 NC_060942.1 JAKCWS010000021.1 99.51 True relocation, inconsistency = -541140 17718312 17735949 383804 366167 NC_060942.1 JAKCWS010000021.1 99.65 True local misassembly 17697896 17720346 406255 383805 NC_060942.1 JAKCWS010000021.1 99.78 True relocation, inconsistency = 294887 17396992 17403008 412272 406256 NC_060942.1 JAKCWS010000021.1 99.68 True relocation, inconsistency = -269799 17641619 17666790 437443 412273 NC_060942.1 JAKCWS010000021.1 99.85 True fake: not a misassembly (possible transposable element) 16957301 16959245 439389 437444 NC_060942.1 JAKCWS010000021.1 99.64 True fake: not a misassembly (possible transposable element) 17631435 17644418 452372 439390 NC_060942.1 JAKCWS010000021.1 99.68 True relocation, inconsistency = 565034 17058770 17066400 460341 452373 NC_060942.1 JAKCWS010000021.1 96.17 True relocation, inconsistency = -557906 17609963 17616609 467054 460408 NC_060942.1 JAKCWS010000021.1 99.83 True relocation, inconsistency = 818659 16789764 16791303 468594 467055 NC_060942.1 JAKCWS010000021.1 99.05 True relocation, inconsistency = -808134 17588681 17597897 477811 468595 NC_060942.1 JAKCWS010000021.1 99.97 True local misassembly 17581031 17585100 482066 477997 NC_060942.1 JAKCWS010000021.1 99.82 True local misassembly 17575372 17585100 491795 482067 NC_060942.1 JAKCWS010000021.1 99.83 True local misassembly 17569267 17573336 495865 491796 NC_060942.1 JAKCWS010000021.1 99.96 True fake: not a misassembly (possible transposable element) 19248355 19250974 503325 500706 NC_060942.1 JAKCWS010000021.1 99.93 True fake: not a misassembly (possible transposable element) 17534611 17555701 524416 503326 NC_060942.1 JAKCWS010000021.1 99.92 True local misassembly 17534611 17536645 526451 524417 NC_060942.1 JAKCWS010000021.1 99.83 True local misassembly 17525452 17533655 535610 527407 NC_060942.1 JAKCWS010000021.1 99.95 True fake: not a misassembly (possible transposable element) 17799536 17804042 544210 539704 NC_060942.1 JAKCWS010000021.1 99.64 True fake: not a misassembly (possible transposable element) 17509911 17516160 551151 544902 NC_060942.1 JAKCWS010000021.1 99.9 True local misassembly 17511133 17513980 553999 551152 NC_060942.1 JAKCWS010000021.1 99.8 True local misassembly 17509911 17516160 561326 555077 NC_060942.1 JAKCWS010000021.1 99.9 True local misassembly 17511509 17513980 563798 561327 NC_060942.1 JAKCWS010000021.1 99.9 True local misassembly 17504031 17509473 569241 563799 NC_060942.1 JAKCWS010000021.1 99.56 True local misassembly 17493043 17506065 582265 569242 NC_060942.1 JAKCWS010000021.1 99.69 True relocation, inconsistency = 109893 17379922 17383149 585488 582266 NC_060942.1 JAKCWS010000021.1 99.15 True local misassembly 17377235 17384337 592586 585489 NC_060942.1 JAKCWS010000021.1 99.07 True relocation, inconsistency = 372887 16996407 17004347 600527 592587 NC_060942.1 JAKCWS010000021.1 99.57 True relocation, inconsistency = -223991 17207119 17220221 614148 600704 NC_060942.1 JAKCWS010000021.1 96.97 True relocation, inconsistency = -265574 17463935 17472692 622907 614149 NC_060942.1 JAKCWS010000021.1 99.73 True local misassembly 17457829 17465969 631048 622908 NC_060942.1 JAKCWS010000021.1 99.85 True relocation, inconsistency = 240134 17212756 17217694 635987 631049 NC_060942.1 JAKCWS010000021.1 99.37 True relocation, inconsistency = -242170 17435368 17454925 655545 635988 NC_060942.1 JAKCWS010000021.1 99.88 True local misassembly 17431113 17436727 661160 655546 NC_060942.1 JAKCWS010000021.1 99.59 True local misassembly 17404667 17435182 691332 661161 NC_060942.1 JAKCWS010000021.1 98.69 True relocation, inconsistency = 814439 16575430 16590227 706133 691333 NC_060942.1 JAKCWS010000021.1 99.6 True relocation, inconsistency = 178363 16393081 16396900 710119 706300 NC_060942.1 JAKCWS010000021.1 99.25 True relocation, inconsistency = -987023 17358273 17380103 731951 710120 NC_060942.1 JAKCWS010000021.1 99.76 True local misassembly 17355871 17358947 735028 731952 NC_060942.1 JAKCWS010000021.1 99.68 True local misassembly 17347830 17355257 743059 735633 NC_060942.1 JAKCWS010000021.1 99.71 True relocation, inconsistency = 272173 17060121 17075656 758596 743060 NC_060942.1 JAKCWS010000021.1 99.5 True relocation, inconsistency = -8140 17060439 17068260 766418 758597 NC_060942.1 JAKCWS010000021.1 99.51 True relocation, inconsistency = -12208 17062998 17071988 776068 767077 NC_060942.1 JAKCWS010000021.1 99.61 True CONTIG JAKCWS010000021.1 776082 misassembled 16305225 16305990 20534 19769 NC_060942.1 JAKCWS010000022.1 98.04 True relocation, inconsistency = -2880654 19176611 19183695 29802 22718 NC_060942.1 JAKCWS010000022.1 99.9 True relocation, inconsistency = -73251 19225784 19234862 53880 44802 NC_060942.1 JAKCWS010000022.1 99.8 True relocation, inconsistency = 75628 19144051 19150155 59985 53881 NC_060942.1 JAKCWS010000022.1 99.59 True relocation, inconsistency = 2307977 16828416 16835913 67981 60146 NC_060942.1 JAKCWS010000022.1 96.57 True relocation, inconsistency = 349348 16467200 16479067 79849 67982 NC_060942.1 JAKCWS010000022.1 99.64 True relocation, inconsistency = -11868 16462908 16479067 96009 79850 NC_060942.1 JAKCWS010000022.1 99.66 True relocation, inconsistency = 10850 16450953 16452057 97114 96010 NC_060942.1 JAKCWS010000022.1 99.38 True relocation, inconsistency = -335446 16756290 16786398 126883 97115 NC_060942.1 JAKCWS010000022.1 98.54 True local misassembly 16755538 16760359 131705 126884 NC_060942.1 JAKCWS010000022.1 99.57 True relocation, inconsistency = -71900 16818015 16827437 141128 131706 NC_060942.1 JAKCWS010000022.1 99.62 True relocation, inconsistency = 368676 16443995 16449338 146472 141129 NC_060942.1 JAKCWS010000022.1 99.76 True indel: stretch of mismatches 16442482 16443831 147985 146636 NC_060942.1 JAKCWS010000022.1 99.72 True relocation, inconsistency = -21705 16450241 16464186 161788 147986 NC_060942.1 JAKCWS010000022.1 97.96 True relocation, inconsistency = -396971 16815980 16847211 192689 161789 NC_060942.1 JAKCWS010000022.1 98.59 True relocation, inconsistency = 340866 16470346 16475113 197457 192690 NC_060942.1 JAKCWS010000022.1 99.79 True local misassembly 16443995 16468310 221773 197458 NC_060942.1 JAKCWS010000022.1 99.79 True relocation, inconsistency = 14245 16420452 16429749 231070 221774 NC_060942.1 JAKCWS010000022.1 99.55 True relocation, inconsistency = -543628 16946363 16964079 248786 231071 NC_060942.1 JAKCWS010000022.1 99.49 True relocation, inconsistency = 542260 16391914 16404102 260975 248787 NC_060942.1 JAKCWS010000022.1 99.64 True local misassembly 16379663 16393948 275261 260976 NC_060942.1 JAKCWS010000022.1 99.56 True relocation, inconsistency = -151239 16521396 16530901 284767 275262 NC_060942.1 JAKCWS010000022.1 99.39 True local misassembly 16512639 16518347 290476 284768 NC_060942.1 JAKCWS010000022.1 99.82 True relocation, inconsistency = 11196 16496731 16501442 295188 290477 NC_060942.1 JAKCWS010000022.1 99.19 True relocation, inconsistency = -176383 16671773 16673113 296529 295189 NC_060942.1 JAKCWS010000022.1 98.75 True relocation, inconsistency = 191637 16475290 16480118 301375 296547 NC_060942.1 JAKCWS010000022.1 99.03 True relocation, inconsistency = -307298 16756294 16782328 327331 301635 NC_060942.1 JAKCWS010000022.1 98.39 True relocation, inconsistency = 294735 16450698 16460452 338192 328438 NC_060942.1 JAKCWS010000022.1 99.58 True local misassembly 16450207 16452057 340043 338193 NC_060942.1 JAKCWS010000022.1 99.67 True indel: indel (<= 5bp) 16448176 16449888 342078 340366 NC_060942.1 JAKCWS010000022.1 99.88 True local misassembly 16443995 16447833 345917 342079 NC_060942.1 JAKCWS010000022.1 99.69 True indel: stretch of mismatches 16440464 16443831 349448 346081 NC_060942.1 JAKCWS010000022.1 99.77 True relocation, inconsistency = -20345 16450574 16460808 359683 349449 NC_060942.1 JAKCWS010000022.1 99.68 True local misassembly 16450634 16456003 365053 359684 NC_060942.1 JAKCWS010000022.1 99.69 True relocation, inconsistency = -380891 16815980 16831524 380597 365054 NC_060942.1 JAKCWS010000022.1 99.64 True relocation, inconsistency = 519750 16293175 16294721 383652 382106 NC_060942.1 JAKCWS010000022.1 98.77 True local misassembly 16296249 16296756 384986 384479 NC_060942.1 JAKCWS010000022.1 98.82 True local misassembly 16292922 16294721 388314 386514 NC_060942.1 JAKCWS010000022.1 98.56 True local misassembly 16293175 16294721 390095 388549 NC_060942.1 JAKCWS010000022.1 98.77 True relocation, inconsistency = -1434541 17724414 17726717 393398 391094 NC_060942.1 JAKCWS010000022.1 99.18 True relocation, inconsistency = 545884 17173249 17178529 398679 393399 NC_060942.1 JAKCWS010000022.1 99.39 True relocation, inconsistency = 878650 16293564 16294598 399714 398680 NC_060942.1 JAKCWS010000022.1 98.56 True relocation, inconsistency = -89365 16378819 16382928 403824 399715 NC_060942.1 JAKCWS010000022.1 99.15 True relocation, inconsistency = -405965 16782074 16784783 406534 403825 NC_060942.1 JAKCWS010000022.1 99.46 True relocation, inconsistency = -3784850 20562854 20564435 410604 409023 NC_060942.1 JAKCWS010000022.1 98.17 True relocation, inconsistency = 4266620 16293036 16294721 413803 412117 NC_060942.1 JAKCWS010000022.1 98.81 True local misassembly 16292922 16294721 415952 414152 NC_060942.1 JAKCWS010000022.1 98.5 True local misassembly 16293175 16294721 417733 416187 NC_060942.1 JAKCWS010000022.1 98.71 True relocation, inconsistency = -1434541 17725743 17726717 419706 418732 NC_060942.1 JAKCWS010000022.1 99.22 True relocation, inconsistency = -2838693 20561514 20564435 422629 419707 NC_060942.1 JAKCWS010000022.1 98.26 True relocation, inconsistency = 2829870 17722127 17727117 432147 427156 NC_060942.1 JAKCWS010000022.1 99.14 True relocation, inconsistency = 1369956 16345046 16345561 439272 438757 NC_060942.1 JAKCWS010000022.1 98.06 True relocation, inconsistency = -4330943 20663462 20665056 451800 450205 NC_060942.1 JAKCWS010000022.1 98.25 True relocation, inconsistency = 4285818 16364456 16369472 464988 459972 NC_060942.1 JAKCWS010000022.1 99.5 True relocation, inconsistency = -525510 16887880 16889965 467075 464989 NC_060942.1 JAKCWS010000022.1 99.44 True relocation, inconsistency = 211624 16674896 16675598 468435 467733 NC_060942.1 JAKCWS010000022.1 99.29 True CONTIG JAKCWS010000022.1 471801 misassembled 18049533 18058604 3575 12641 NC_060942.1 JAKCWS010000023.1 99.87 True relocation, inconsistency = 327735 18389841 18396882 16143 23184 NC_060942.1 JAKCWS010000023.1 99.96 True relocation, inconsistency = 30525 18428600 18435651 24377 31428 NC_060942.1 JAKCWS010000023.1 99.94 True local misassembly 18448497 18451666 38169 41338 NC_060942.1 JAKCWS010000023.1 99.82 True relocation, inconsistency = 265553 18717220 18724137 41339 48256 NC_060942.1 JAKCWS010000023.1 99.81 True relocation, inconsistency = 217351 18977209 18984927 83977 91695 NC_060942.1 JAKCWS010000023.1 99.79 True relocation, inconsistency = -490028 18506177 18514870 102973 111666 NC_060942.1 JAKCWS010000023.1 99.92 True relocation, inconsistency = -706302 17813444 17819537 116542 122635 NC_060942.1 JAKCWS010000023.1 99.9 True relocation, inconsistency = 953209 18772747 18773673 122636 123562 NC_060942.1 JAKCWS010000023.1 99.87 True relocation, inconsistency = 39674 18829380 18839777 139595 149996 NC_060942.1 JAKCWS010000023.1 99.82 True relocation, inconsistency = -282506 18557272 18559754 149997 152479 NC_060942.1 JAKCWS010000023.1 99.84 True indel: stretch of mismatches 18559755 18568118 152480 160846 NC_060942.1 JAKCWS010000023.1 99.8 True relocation, inconsistency = 271659 18839778 18842399 160847 163468 NC_060942.1 JAKCWS010000023.1 99.95 True relocation, inconsistency = 189880 19032280 19038923 163469 170112 NC_060942.1 JAKCWS010000023.1 99.82 True relocation, inconsistency = -111230 18927694 18938780 170113 181199 NC_060942.1 JAKCWS010000023.1 99.96 True fake: not a misassembly (possible transposable element) 19228731 19231475 181200 183944 NC_060942.1 JAKCWS010000023.1 99.87 True fake: not a misassembly (possible transposable element) 18947631 18953890 183945 190204 NC_060942.1 JAKCWS010000023.1 99.81 True relocation, inconsistency = 36620 18990511 18995473 190205 195167 NC_060942.1 JAKCWS010000023.1 99.8 True relocation, inconsistency = 18315 19017899 19031038 199278 212417 NC_060942.1 JAKCWS010000023.1 99.83 True relocation, inconsistency = 89532 19120571 19129394 212418 221241 NC_060942.1 JAKCWS010000023.1 99.83 True local misassembly 19127360 19133464 221242 227346 NC_060942.1 JAKCWS010000023.1 99.8 True relocation, inconsistency = -103777 19029696 19039862 227355 237521 NC_060942.1 JAKCWS010000023.1 99.91 True local misassembly 19038924 19044460 238618 244154 NC_060942.1 JAKCWS010000023.1 99.8 True local misassembly 19042426 19044460 244155 246188 NC_060942.1 JAKCWS010000023.1 99.82 True CONTIG JAKCWS010000023.1 248181 misassembled 19295744 19298088 2345 1 NC_060942.1 JAKCWS010000024.1 97.12 True local misassembly 19293371 19298116 7091 2346 NC_060942.1 JAKCWS010000024.1 97.12 True local misassembly 19283429 19298116 21441 7092 NC_060942.1 JAKCWS010000024.1 97.6 True local misassembly 19256425 19267966 43700 32159 NC_060942.1 JAKCWS010000024.1 99.9 True relocation, inconsistency = -31874 19279359 19288286 52640 43713 NC_060942.1 JAKCWS010000024.1 99.84 True relocation, inconsistency = 13560 19263462 19265601 54977 52838 NC_060942.1 JAKCWS010000024.1 99.83 True local misassembly 19257660 19265496 62813 54978 NC_060942.1 JAKCWS010000024.1 99.81 True relocation, inconsistency = 47472 19202645 19208294 70356 64707 NC_060942.1 JAKCWS010000024.1 99.86 True local misassembly 19197636 19206714 79435 70357 NC_060942.1 JAKCWS010000024.1 99.91 True local misassembly 19180484 19183193 95215 92508 NC_060942.1 JAKCWS010000024.1 99.82 True local misassembly 19176916 19183193 101493 95216 NC_060942.1 JAKCWS010000024.1 99.89 True local misassembly 19176611 19183695 108578 101494 NC_060942.1 JAKCWS010000024.1 99.9 True relocation, inconsistency = 46120 19129145 19130490 109924 108579 NC_060942.1 JAKCWS010000024.1 99.83 True relocation, inconsistency = -137343 19261730 19265609 114683 110803 NC_060942.1 JAKCWS010000024.1 99.87 True relocation, inconsistency = 125134 19126421 19133464 124858 117815 NC_060942.1 JAKCWS010000024.1 99.84 True CONTIG JAKCWS010000024.1 126978 misassembled 18079955 18087108 1 7156 NC_060942.1 JAKCWS010000025.1 99.82 True relocation, inconsistency = 250382 18354879 18362301 24545 31964 NC_060942.1 JAKCWS010000025.1 99.82 True relocation, inconsistency = -71256 18291046 18293220 31965 34139 NC_060942.1 JAKCWS010000025.1 99.98 True relocation, inconsistency = -164881 18128340 18138383 34140 44179 NC_060942.1 JAKCWS010000025.1 99.8 True relocation, inconsistency = -67175 18078037 18085459 51008 58427 NC_060942.1 JAKCWS010000025.1 99.88 True relocation, inconsistency = 22385 18107845 18110019 58428 60602 NC_060942.1 JAKCWS010000025.1 99.93 True relocation, inconsistency = 14246 18124266 18170960 60603 107292 NC_060942.1 JAKCWS010000025.1 99.85 True local misassembly 18171682 18180753 112085 121152 NC_060942.1 JAKCWS010000025.1 99.7 True CONTIG JAKCWS010000025.1 122557 misassembled 64328 150887 1 86245 NC_060943.1 CM039052.1 99.19 True local misassembly 156102 283318 88447 217067 NC_060943.1 CM039052.1 98.22 True local misassembly 282623 299538 217068 233983 NC_060943.1 CM039052.1 99.75 True local misassembly 299934 432487 235592 373152 NC_060943.1 CM039052.1 96.07 True local misassembly 433236 493642 373449 432324 NC_060943.1 CM039052.1 95.84 True local misassembly 494561 498682 433237 437357 NC_060943.1 CM039052.1 99.54 True indel: indel (> 5bp) 499165 514900 437792 453527 NC_060943.1 CM039052.1 99.97 True indel: indel (<= 5bp) 514902 516026 453528 454652 NC_060943.1 CM039052.1 99.91 True indel: indel (<= 5bp) 516031 516830 454653 455452 NC_060943.1 CM039052.1 99.5 True indel: indel (<= 5bp) 517002 518175 455626 456799 NC_060943.1 CM039052.1 99.74 True local misassembly 519080 519741 458702 459363 NC_060943.1 CM039052.1 98.94 True local misassembly 522957 524387 459364 460794 NC_060943.1 CM039052.1 99.93 True indel: indel (> 5bp) 524519 526825 460908 463214 NC_060943.1 CM039052.1 99.91 True indel: indel (> 5bp) 526959 527603 463359 464003 NC_060943.1 CM039052.1 99.53 True indel: indel (<= 5bp) 527605 528144 464004 464543 NC_060943.1 CM039052.1 100.0 True indel: stretch of mismatches 528444 529588 464843 465987 NC_060943.1 CM039052.1 99.65 True indel: indel (<= 5bp) 529590 530659 465988 467057 NC_060943.1 CM039052.1 99.63 True indel: indel (<= 5bp) 530853 532609 467256 469012 NC_060943.1 CM039052.1 99.66 True indel: stretch of mismatches 532627 533143 469030 469546 NC_060943.1 CM039052.1 99.23 True indel: indel (> 5bp) 533161 534054 469547 470440 NC_060943.1 CM039052.1 99.33 True indel: indel (<= 5bp) 534056 534778 470441 471163 NC_060943.1 CM039052.1 98.76 True indel: indel (> 5bp) 534952 539191 471325 475564 NC_060943.1 CM039052.1 99.39 True indel: indel (> 5bp) 539192 540176 475613 476597 NC_060943.1 CM039052.1 99.8 True indel: indel (> 5bp) 540177 541102 476608 477533 NC_060943.1 CM039052.1 99.24 True indel: indel (<= 5bp) 541569 542931 477999 479361 NC_060943.1 CM039052.1 99.41 True indel: indel (> 5bp) 542941 548109 479362 484530 NC_060943.1 CM039052.1 99.86 True indel: indel (<= 5bp) 548114 553738 484531 490155 NC_060943.1 CM039052.1 99.95 True indel: indel (> 5bp) 553745 556279 490156 492690 NC_060943.1 CM039052.1 100.0 True indel: indel (> 5bp) 556644 560032 493022 496410 NC_060943.1 CM039052.1 99.94 True indel: indel (> 5bp) 560033 566677 496463 503107 NC_060943.1 CM039052.1 99.91 True indel: indel (> 5bp) 567164 567812 503565 504213 NC_060943.1 CM039052.1 99.54 True local misassembly 568027 790584 504539 727201 NC_060943.1 CM039052.1 99.54 True local misassembly 791345 827861 727202 763431 NC_060943.1 CM039052.1 97.94 True local misassembly 829445 830648 764446 765649 NC_060943.1 CM039052.1 99.42 True indel: indel (> 5bp) 830649 831582 765704 766637 NC_060943.1 CM039052.1 99.79 True indel: indel (> 5bp) 831605 834363 766638 769396 NC_060943.1 CM039052.1 99.71 True local misassembly 836589 837351 771994 772756 NC_060943.1 CM039052.1 99.34 True local misassembly 837352 837884 774950 775482 NC_060943.1 CM039052.1 98.31 True indel: indel (> 5bp) 838143 838685 775668 776210 NC_060943.1 CM039052.1 99.82 True indel: indel (> 5bp) 838949 839576 776480 777107 NC_060943.1 CM039052.1 99.2 True local misassembly 840686 1012281 780294 952330 NC_060943.1 CM039052.1 98.75 True local misassembly 1014207 2320897 955121 2260209 NC_060943.1 CM039052.1 99.58 True indel: indel (> 5bp) 2320955 3308205 2260222 3246981 NC_060943.1 CM039052.1 99.2 True local misassembly 3311020 4870610 3249266 4808439 NC_060943.1 CM039052.1 99.48 True local misassembly 4871178 5839413 4808440 5776380 NC_060943.1 CM039052.1 99.81 True local misassembly 5837254 6689852 5776381 6628811 NC_060943.1 CM039052.1 99.81 True indel: indel (> 5bp) 6689980 6938270 6628997 6877632 NC_060943.1 CM039052.1 99.67 True indel: indel (> 5bp) 6938337 6984688 6877633 6924284 NC_060943.1 CM039052.1 98.39 True local misassembly 6985399 7024993 6925544 6965395 NC_060943.1 CM039052.1 99.11 True fake: not a misassembly (possible transposable element) 7024994 7026061 6966463 6965396 NC_060943.1 CM039052.1 100.0 True fake: not a misassembly (possible transposable element) 7026062 8288208 6966464 8237059 NC_060943.1 CM039052.1 98.89 True relocation, inconsistency = -14871 8273338 8650987 8237060 8614807 NC_060943.1 CM039052.1 99.44 True local misassembly 8651526 8843560 8615356 8807366 NC_060943.1 CM039052.1 99.67 True relocation, scaffold gap is present, inconsistency = -78946 8764653 10096235 8807405 10139273 NC_060943.1 CM039052.1 99.79 True local misassembly 10096330 11552598 10139478 11595503 NC_060943.1 CM039052.1 99.75 True indel: indel (> 5bp) 11552893 13661188 11595760 13703816 NC_060943.1 CM039052.1 99.88 True local misassembly 13662363 14341683 13704954 14384098 NC_060943.1 CM039052.1 99.82 True local misassembly 14342287 14902057 14384712 14944387 NC_060943.1 CM039052.1 99.74 True indel: indel (> 5bp) 14902172 15692113 14944455 15735656 NC_060943.1 CM039052.1 99.14 True indel: indel (> 5bp) 15692255 15726043 15735748 15769549 NC_060943.1 CM039052.1 99.04 True indel: indel (<= 5bp) 15726137 15832256 15769638 15875267 NC_060943.1 CM039052.1 98.6 True fake: not a misassembly (possible transposable element) 191823573 191824592 15875465 15876484 NC_060927.1 CM039052.1 98.24 True fake: not a misassembly (possible transposable element) 15835139 15994644 15876502 16035294 NC_060943.1 CM039052.1 98.87 True local misassembly 15997945 16062891 16035295 16100411 NC_060943.1 CM039052.1 99.12 True local misassembly 16062895 16105773 16100695 16143062 NC_060943.1 CM039052.1 95.85 True indel: indel (<= 5bp) 16105981 18418683 16143273 18456199 NC_060943.1 CM039052.1 99.71 True local misassembly 18418630 19038354 18457004 19076739 NC_060943.1 CM039052.1 99.79 True indel: indel (> 5bp) 19038575 19826246 19076988 19864578 NC_060943.1 CM039052.1 99.71 True indel: indel (> 5bp) 19826300 20003251 19864654 20036583 NC_060943.1 CM039052.1 96.56 True indel: indel (> 5bp) 20003316 22052521 20036637 22084017 NC_060943.1 CM039052.1 99.62 True indel: indel (> 5bp) 22052642 23100514 22084182 23131379 NC_060943.1 CM039052.1 99.77 True local misassembly 23100584 24634457 23133498 24673098 NC_060943.1 CM039052.1 99.15 True relocation, inconsistency = 20264 24654987 24657103 24673364 24675479 NC_060943.1 CM039052.1 96.87 True relocation, inconsistency = 26790 24683894 24698665 24675480 24690253 NC_060943.1 CM039052.1 98.94 True local misassembly 24694036 24696438 24690254 24692659 NC_060943.1 CM039052.1 98.5 True relocation, inconsistency = -9262 24687177 24691807 24692660 24697289 NC_060943.1 CM039052.1 98.31 True local misassembly 24687177 24709602 24697290 24720224 NC_060943.1 CM039052.1 95.98 True relocation, inconsistency = -12773 24696830 24703168 24720225 24726563 NC_060943.1 CM039052.1 96.79 True indel: indel (<= 5bp) 24703170 24706172 24726564 24729566 NC_060943.1 CM039052.1 99.24 True local misassembly 24707876 24714919 24729567 24736610 NC_060943.1 CM039052.1 99.38 True indel: indel (<= 5bp) 24714921 24719626 24736611 24741316 NC_060943.1 CM039052.1 99.34 True local misassembly 24720138 24722058 24741317 24743237 NC_060943.1 CM039052.1 99.53 True relocation, inconsistency = -12773 24709579 24711281 24743531 24745233 NC_060943.1 CM039052.1 99.35 True local misassembly 24711793 24728482 24745234 24761923 NC_060943.1 CM039052.1 99.25 True local misassembly 24728483 24729732 24762435 24763684 NC_060943.1 CM039052.1 99.38 True relocation, inconsistency = 65207 24794940 24898701 24763685 24867459 NC_060943.1 CM039052.1 96.46 True relocation, inconsistency = -81907 24816795 24964791 24867460 25015480 NC_060943.1 CM039052.1 97.75 True relocation, inconsistency = 219541 25184333 25217953 25015481 25049104 NC_060943.1 CM039052.1 98.52 True local misassembly 25218400 25220467 25050049 25052119 NC_060943.1 CM039052.1 95.27 True local misassembly 25226340 25309971 25052714 25136346 NC_060943.1 CM039052.1 99.7 True local misassembly 25315795 25321993 25137744 25143941 NC_060943.1 CM039052.1 98.85 True relocation, inconsistency = 7497 25330094 25337617 25144545 25152069 NC_060943.1 CM039052.1 99.26 True relocation, inconsistency = -7670 25330280 25343621 25152402 25165743 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = 270304 25617089 25652273 25168907 25204087 NC_060943.1 CM039052.1 99.8 True local misassembly 25654497 25715255 25204088 25264494 NC_060943.1 CM039052.1 99.03 True relocation, inconsistency = -9397 25705859 25726569 25264495 25285212 NC_060943.1 CM039052.1 98.87 True translocation 46684543 46708954 25285213 25309628 NC_060929.1 CM039052.1 96.51 True translocation 25695788 25822942 25309629 25435636 NC_060943.1 CM039052.1 98.54 True relocation, inconsistency = 49555 25872498 25873961 25435637 25437094 NC_060943.1 CM039052.1 95.86 True relocation, inconsistency = 13933 25889368 25890508 25438568 25439708 NC_060943.1 CM039052.1 95.88 True local misassembly 25893531 25894182 25440109 25440760 NC_060943.1 CM039052.1 97.24 True local misassembly 25892843 25893530 25441460 25442147 NC_060943.1 CM039052.1 96.95 True local misassembly 25894455 25896263 25442732 25444540 NC_060943.1 CM039052.1 98.23 True relocation, inconsistency = 14606 25910993 25911511 25444664 25445182 NC_060943.1 CM039052.1 98.05 True local misassembly 25909813 25911239 25445183 25446609 NC_060943.1 CM039052.1 97.7 True relocation, inconsistency = 3314428 29225668 29228764 25446610 25449706 NC_060943.1 CM039052.1 96.71 True indel: indel (<= 5bp) 29229181 29230283 25450121 25451221 NC_060943.1 CM039052.1 97.1 True local misassembly 29224217 29226596 25451947 25454326 NC_060943.1 CM039052.1 96.81 True relocation, inconsistency = -3222657 26004335 26005794 25454722 25456178 NC_060943.1 CM039052.1 97.19 True local misassembly 26006359 26008463 25456740 25458843 NC_060943.1 CM039052.1 96.77 True relocation, inconsistency = 3222995 29231459 29232771 25458844 25460153 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = -11213 29221559 29224100 25460154 25462693 NC_060943.1 CM039052.1 96.85 True local misassembly 29228517 29233093 25462694 25467266 NC_060943.1 CM039052.1 97.05 True local misassembly 29228676 29229804 25467267 25468395 NC_060943.1 CM039052.1 96.67 True local misassembly 29230327 29231890 25468917 25470480 NC_060943.1 CM039052.1 96.36 True local misassembly 29232415 29233093 25471342 25472020 NC_060943.1 CM039052.1 97.64 True fake: not a misassembly (possible transposable element) 29245632 29247171 25472682 25474219 NC_060943.1 CM039052.1 97.63 True fake: not a misassembly (possible transposable element) 29235293 29237578 25474220 25476503 NC_060943.1 CM039052.1 97.64 True local misassembly 29242666 29243257 25476504 25477095 NC_060943.1 CM039052.1 97.39 True local misassembly 29238502 29240165 25477096 25478757 NC_060943.1 CM039052.1 97.54 True local misassembly 29245632 29247295 25479473 25481133 NC_060943.1 CM039052.1 97.6 True local misassembly 29242543 29243681 25481134 25482272 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = -19695 29225173 29228633 25483459 25486919 NC_060943.1 CM039052.1 96.62 True local misassembly 29229065 29233093 25487690 25491716 NC_060943.1 CM039052.1 96.75 True relocation, inconsistency = 20020 29253114 29253793 25491717 25492396 NC_060943.1 CM039052.1 97.54 True indel: indel (<= 5bp) 29254074 29256143 25492682 25494751 NC_060943.1 CM039052.1 96.71 True local misassembly 29256916 29257807 25495185 25496076 NC_060943.1 CM039052.1 97.53 True local misassembly 29259114 29260189 25497382 25498458 NC_060943.1 CM039052.1 96.84 True local misassembly 29253453 29258431 25498514 25503496 NC_060943.1 CM039052.1 97.27 True local misassembly 29259115 29260189 25503840 25504914 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = -3385313 25874948 25878956 25504986 25508996 NC_060943.1 CM039052.1 97.76 True relocation, inconsistency = 8501 25888545 25890463 25510084 25512004 NC_060943.1 CM039052.1 96.25 True local misassembly 25895125 25896470 25512005 25513350 NC_060943.1 CM039052.1 95.98 True relocation, inconsistency = -18256 25878585 25880328 25513721 25515464 NC_060943.1 CM039052.1 96.96 True relocation, inconsistency = 44748 25926330 25931315 25516718 25521701 NC_060943.1 CM039052.1 98.01 True relocation, inconsistency = 19378 25950760 25951634 25521768 25522642 NC_060943.1 CM039052.1 97.83 True indel: stretch of mismatches 25951721 25952441 25522729 25523449 NC_060943.1 CM039052.1 96.95 True indel: indel (<= 5bp) 25952442 25953418 25523451 25524427 NC_060943.1 CM039052.1 97.95 True relocation, inconsistency = 45215 25998864 26000557 25524658 25526351 NC_060943.1 CM039052.1 96.75 True indel: indel (<= 5bp) 26000575 26001355 25526367 25527147 NC_060943.1 CM039052.1 96.93 True local misassembly 26002963 26006761 25528411 25532210 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = 3238612 29245639 29247192 25532476 25534029 NC_060943.1 CM039052.1 97.43 True local misassembly 29248379 29249904 25535223 25536750 NC_060943.1 CM039052.1 97.64 True relocation, inconsistency = -14593 29235685 29236830 25537124 25538269 NC_060943.1 CM039052.1 98.25 True relocation, inconsistency = -10536 29230695 29232337 25542670 25544311 NC_060943.1 CM039052.1 96.77 True local misassembly 29235121 29236826 25548119 25549824 NC_060943.1 CM039052.1 97.48 True fake: not a misassembly (possible transposable element) 29249736 29250478 25549843 25550586 NC_060943.1 CM039052.1 96.64 True fake: not a misassembly (possible transposable element) 29240888 29241760 25553557 25554429 NC_060943.1 CM039052.1 97.14 True local misassembly 29245674 29246653 25558349 25559328 NC_060943.1 CM039052.1 96.84 True local misassembly 29248204 29248952 25561224 25561973 NC_060943.1 CM039052.1 96.8 True local misassembly 29251276 29252298 25564645 25565667 NC_060943.1 CM039052.1 96.77 True local misassembly 29254512 29255827 25567546 25568861 NC_060943.1 CM039052.1 97.26 True local misassembly 29259114 29260189 25572145 25573221 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = -8838 29254449 29255823 25576319 25577693 NC_060943.1 CM039052.1 97.45 True local misassembly 29256346 29257807 25578217 25579678 NC_060943.1 CM039052.1 96.99 True local misassembly 29260503 29262541 25579999 25582041 NC_060943.1 CM039052.1 96.18 True local misassembly 29258128 29258886 25584077 25584835 NC_060943.1 CM039052.1 98.02 True fake: not a misassembly (possible transposable element) 29242407 29243956 25584986 25586532 NC_060943.1 CM039052.1 97.42 True fake: not a misassembly (possible transposable element) 29260498 29261811 25587808 25589121 NC_060943.1 CM039052.1 96.27 True relocation, inconsistency = -3350074 25912569 25914251 25589953 25591634 NC_060943.1 CM039052.1 96.49 True relocation, inconsistency = 3336148 29251092 29252298 25592327 25593533 NC_060943.1 CM039052.1 97.02 True local misassembly 29253128 29254040 25594705 25595618 NC_060943.1 CM039052.1 97.81 True indel: indel (<= 5bp) 29254481 29255827 25596064 25597409 NC_060943.1 CM039052.1 97.77 True local misassembly 29259119 29260189 25600362 25601433 NC_060943.1 CM039052.1 96.92 True indel: indel (<= 5bp) 29260503 29262541 25601751 25603793 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = 355389 29618824 29619741 25604687 25605602 NC_060943.1 CM039052.1 96.59 True relocation, inconsistency = -8838 29610904 29615257 25605603 25609954 NC_060943.1 CM039052.1 96.26 True relocation, inconsistency = -115916 29500911 29502178 25611524 25612791 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -127636 29374543 29382921 25612792 25621170 NC_060943.1 CM039052.1 96.49 True relocation, inconsistency = -147134 29235788 29237513 25621171 25622896 NC_060943.1 CM039052.1 96.31 True relocation, inconsistency = 498059 29735573 29736291 25622897 25623615 NC_060943.1 CM039052.1 96.39 True relocation, inconsistency = -511987 29225389 29226226 25624700 25625537 NC_060943.1 CM039052.1 97.01 True fake: not a misassembly (possible transposable element) 29258135 29260189 25625538 25627593 NC_060943.1 CM039052.1 97.28 True fake: not a misassembly (possible transposable element) 29230695 29231571 25630350 25631226 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = 25791 29260498 29261181 25634362 25635045 NC_060943.1 CM039052.1 97.22 True relocation, inconsistency = -168576 29093819 29095651 25636259 25638091 NC_060943.1 CM039052.1 97.11 True indel: indel (<= 5bp) 29095653 29097204 25638092 25639643 NC_060943.1 CM039052.1 97.42 True local misassembly 29097885 29098406 25639644 25640165 NC_060943.1 CM039052.1 98.47 True indel: indel (<= 5bp) 29098407 29099985 25640170 25641748 NC_060943.1 CM039052.1 96.45 True indel: indel (<= 5bp) 29099986 29101627 25641750 25643391 NC_060943.1 CM039052.1 95.86 True local misassembly 29096000 29096532 25644216 25644748 NC_060943.1 CM039052.1 97.75 True indel: indel (<= 5bp) 29096535 29097892 25644749 25646106 NC_060943.1 CM039052.1 97.2 True local misassembly 29095175 29095999 25646107 25646931 NC_060943.1 CM039052.1 97.7 True local misassembly 29093960 29095172 25646933 25648145 NC_060943.1 CM039052.1 96.95 True indel: indel (<= 5bp) 29095175 29095999 25648146 25648970 NC_060943.1 CM039052.1 97.7 True local misassembly 29100755 29102516 25648972 25650733 NC_060943.1 CM039052.1 96.03 True local misassembly 29100270 29101078 25651205 25652013 NC_060943.1 CM039052.1 96.04 True local misassembly 29098716 29099987 25652031 25653302 NC_060943.1 CM039052.1 96.31 True local misassembly 29096680 29103873 25654072 25661271 NC_060943.1 CM039052.1 95.76 True local misassembly 29099455 29099985 25661272 25661802 NC_060943.1 CM039052.1 96.01 True indel: indel (<= 5bp) 29099986 29104190 25661804 25666008 NC_060943.1 CM039052.1 96.03 True local misassembly 29100950 29101873 25666166 25667089 NC_060943.1 CM039052.1 97.19 True relocation, inconsistency = -9175 29093046 29096532 25667437 25670923 NC_060943.1 CM039052.1 96.33 True indel: indel (<= 5bp) 29096535 29098232 25670924 25672621 NC_060943.1 CM039052.1 96.53 True local misassembly 29096523 29098406 25673628 25675511 NC_060943.1 CM039052.1 96.82 True indel: indel (<= 5bp) 29098407 29099871 25675516 25676980 NC_060943.1 CM039052.1 96.52 True local misassembly 29100211 29100947 25676981 25677717 NC_060943.1 CM039052.1 96.2 True indel: indel (<= 5bp) 29100950 29102647 25677718 25679415 NC_060943.1 CM039052.1 96.76 True relocation, inconsistency = -9853 29093561 29098098 25680182 25684714 NC_060943.1 CM039052.1 97.07 True relocation, inconsistency = -7504 29091223 29095363 25685343 25689512 NC_060943.1 CM039052.1 96.48 True local misassembly 29095930 29102498 25690106 25696731 NC_060943.1 CM039052.1 95.28 True relocation, inconsistency = -9542 29093198 29094269 25696973 25698044 NC_060943.1 CM039052.1 97.39 True indel: indel (<= 5bp) 29094271 29094928 25698045 25698702 NC_060943.1 CM039052.1 96.05 True local misassembly 29095269 29095863 25698703 25699297 NC_060943.1 CM039052.1 98.82 True indel: indel (> 5bp) 29095864 29096882 25699326 25700344 NC_060943.1 CM039052.1 97.45 True local misassembly 29090874 29092109 25700452 25701687 NC_060943.1 CM039052.1 97.25 True relocation, inconsistency = 352957 29446536 29453464 25703157 25710137 NC_060943.1 CM039052.1 95.59 True relocation, inconsistency = -361514 29092799 29094269 25710986 25712456 NC_060943.1 CM039052.1 97.69 True indel: indel (<= 5bp) 29094271 29095863 25712457 25714049 NC_060943.1 CM039052.1 96.74 True indel: indel (> 5bp) 29095864 29098406 25714078 25716620 NC_060943.1 CM039052.1 97.37 True indel: indel (<= 5bp) 29098827 29099848 25717040 25718061 NC_060943.1 CM039052.1 96.48 True relocation, inconsistency = -7475 29092487 29093378 25718175 25719066 NC_060943.1 CM039052.1 96.86 True local misassembly 29093424 29094525 25719446 25720547 NC_060943.1 CM039052.1 97.01 True indel: indel (<= 5bp) 29094527 29095418 25720548 25721439 NC_060943.1 CM039052.1 96.52 True indel: indel (<= 5bp) 29095420 29096565 25721440 25722585 NC_060943.1 CM039052.1 96.07 True indel: indel (<= 5bp) 29096567 29097274 25722586 25723293 NC_060943.1 CM039052.1 96.47 True local misassembly 29091158 29104164 25723294 25736296 NC_060943.1 CM039052.1 96.14 True relocation, inconsistency = -18349 29085816 29086678 25736297 25737159 NC_060943.1 CM039052.1 96.11 True indel: indel (<= 5bp) 29086681 29087907 25737160 25738386 NC_060943.1 CM039052.1 97.64 True local misassembly 29088248 29090412 25738387 25740551 NC_060943.1 CM039052.1 95.75 True indel: indel (<= 5bp) 29090413 29092109 25740553 25742249 NC_060943.1 CM039052.1 96.23 True indel: indel (<= 5bp) 29092115 29093812 25742258 25743955 NC_060943.1 CM039052.1 96.29 True indel: indel (<= 5bp) 29093815 29095172 25743956 25745313 NC_060943.1 CM039052.1 95.88 True indel: indel (<= 5bp) 29095175 29096532 25745314 25746671 NC_060943.1 CM039052.1 96.02 True indel: indel (<= 5bp) 29096535 29098328 25746672 25748465 NC_060943.1 CM039052.1 96.54 True local misassembly 29092457 29100124 25748712 25756382 NC_060943.1 CM039052.1 96.66 True relocation, inconsistency = 191686 29292296 29293840 25756868 25758412 NC_060943.1 CM039052.1 95.99 True local misassembly 29295089 29296577 25759321 25760809 NC_060943.1 CM039052.1 97.38 True local misassembly 29298883 29300317 25763453 25764887 NC_060943.1 CM039052.1 97.42 True local misassembly 29300529 29302441 25765437 25767349 NC_060943.1 CM039052.1 96.68 True relocation, inconsistency = -196104 29106338 29115088 25767350 25776100 NC_060943.1 CM039052.1 96.09 True relocation, inconsistency = -2797573 26317854 26319584 25776439 25778169 NC_060943.1 CM039052.1 97.86 True indel: indel (<= 5bp) 26319586 26320731 25778170 25779315 NC_060943.1 CM039052.1 97.03 True indel: indel (> 5bp) 26321177 26322425 25779768 25781016 NC_060943.1 CM039052.1 96.64 True indel: indel (<= 5bp) 26322427 26323884 25781017 25782474 NC_060943.1 CM039052.1 97.12 True local misassembly 26324226 26324909 25782475 25783158 NC_060943.1 CM039052.1 98.55 True relocation, inconsistency = 2317541 28642451 28646616 25783159 25787324 NC_060943.1 CM039052.1 97.96 True relocation, inconsistency = -2433507 26213110 26214519 25787325 25788734 NC_060943.1 CM039052.1 98.07 True relocation, inconsistency = 2933252 29152869 29153661 25793832 25794624 NC_060943.1 CM039052.1 98.11 True indel: indel (<= 5bp) 29153662 29154890 25794626 25795854 NC_060943.1 CM039052.1 96.66 True local misassembly 29155232 29159629 25795855 25800252 NC_060943.1 CM039052.1 97.48 True relocation, inconsistency = -2945499 26214683 26217873 25800805 25803995 NC_060943.1 CM039052.1 97.15 True relocation, inconsistency = 2428743 28647112 28650763 25804491 25808143 NC_060943.1 CM039052.1 97.29 True relocation, inconsistency = -2392693 26258071 26260398 25808144 25810473 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = -85369 26175030 26182538 25810474 25817985 NC_060943.1 CM039052.1 96.71 True relocation, inconsistency = -62569 26120482 26123181 25818498 25821198 NC_060943.1 CM039052.1 97.48 True relocation, inconsistency = 2642620 28765828 28768729 25821225 25824128 NC_060943.1 CM039052.1 97.59 True relocation, inconsistency = 220659 28989389 28994089 25824129 25828831 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = -2830975 26163952 26166387 25829669 25832104 NC_060943.1 CM039052.1 97.37 True relocation, inconsistency = 2645328 28812752 28814227 25833141 25834616 NC_060943.1 CM039052.1 97.49 True local misassembly 28812752 28814227 25837224 25838699 NC_060943.1 CM039052.1 97.56 True relocation, inconsistency = 172040 28986521 28988626 25838953 25841058 NC_060943.1 CM039052.1 96.82 True relocation, inconsistency = -345435 28644052 28651102 25841919 25848971 NC_060943.1 CM039052.1 97.32 True relocation, inconsistency = 41483 28692776 28696297 25849162 25852684 NC_060943.1 CM039052.1 97.42 True relocation, inconsistency = -2367189 26329466 26332519 25853042 25856095 NC_060943.1 CM039052.1 98.4 True local misassembly 26332860 26334446 25856096 25857682 NC_060943.1 CM039052.1 97.61 True relocation, inconsistency = 2553491 28890746 28893324 25860491 25863071 NC_060943.1 CM039052.1 96.82 True relocation, inconsistency = -2842576 26050749 26054278 25863072 25866602 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = 3307905 29362184 29363084 25866603 25867505 NC_060943.1 CM039052.1 96.26 True relocation, inconsistency = -730525 28632560 28634421 25867506 25869367 NC_060943.1 CM039052.1 97.21 True relocation, inconsistency = -2433173 26202386 26209544 25870505 25877660 NC_060943.1 CM039052.1 96.45 True relocation, inconsistency = 2956041 29165586 29169825 25877661 25881897 NC_060943.1 CM039052.1 97.01 True relocation, inconsistency = -263459 28906583 28908330 25882114 25883859 NC_060943.1 CM039052.1 97.29 True local misassembly 28912413 28914914 25883860 25886358 NC_060943.1 CM039052.1 97.43 True relocation, inconsistency = 55411 28970326 28973940 25886359 25889971 NC_060943.1 CM039052.1 96.82 True relocation, inconsistency = -67653 28906288 28913853 25889972 25897535 NC_060943.1 CM039052.1 96.89 True local misassembly 28916276 28918259 25897917 25899897 NC_060943.1 CM039052.1 96.93 True relocation, inconsistency = -1717926 27200647 27205156 25900211 25904717 NC_060943.1 CM039052.1 96.85 True relocation, inconsistency = -1038932 26166394 26170272 25904887 25908764 NC_060943.1 CM039052.1 96.08 True relocation, inconsistency = 2726595 28896868 28901165 25908765 25913058 NC_060943.1 CM039052.1 97.22 True relocation, inconsistency = -17340 28883826 28891379 25913059 25920606 NC_060943.1 CM039052.1 97.19 True local misassembly 28889000 28892019 25920607 25923626 NC_060943.1 CM039052.1 96.62 True relocation, inconsistency = 15980 28908000 28909677 25923627 25925304 NC_060943.1 CM039052.1 97.44 True local misassembly 28908318 28914259 25925305 25931240 NC_060943.1 CM039052.1 96.75 True local misassembly 28912219 28914131 25931241 25933152 NC_060943.1 CM039052.1 97.13 True local misassembly 28910051 28915398 25933153 25938497 NC_060943.1 CM039052.1 97.12 True local misassembly 28914719 28915777 25938498 25939556 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = 94181 29009959 29016789 25939557 25946384 NC_060943.1 CM039052.1 96.56 True relocation, inconsistency = -106760 28910381 28912308 25946736 25948663 NC_060943.1 CM039052.1 97.61 True local misassembly 28912762 28914789 25949454 25951481 NC_060943.1 CM039052.1 97.65 True relocation, inconsistency = -8502 28906288 28909755 25951482 25954947 NC_060943.1 CM039052.1 97.0 True local misassembly 28905018 28905732 25956329 25957043 NC_060943.1 CM039052.1 97.28 True relocation, inconsistency = -386560 28519173 28528578 25957044 25966447 NC_060943.1 CM039052.1 96.59 True relocation, inconsistency = 376700 28905279 28912222 25966448 25973387 NC_060943.1 CM039052.1 96.81 True relocation, inconsistency = -75486 28836737 28839057 25973388 25975705 NC_060943.1 CM039052.1 96.97 True relocation, inconsistency = -104363 28734695 28741750 25975706 25982757 NC_060943.1 CM039052.1 97.1 True relocation, inconsistency = 132589 28874340 28877342 25982758 25985758 NC_060943.1 CM039052.1 96.91 True relocation, inconsistency = 28560 28905903 28912200 25985759 25992052 NC_060943.1 CM039052.1 97.33 True relocation, inconsistency = -192771 28719430 28720317 25992053 25992940 NC_060943.1 CM039052.1 98.75 True local misassembly 28720658 28721702 25992941 25993985 NC_060943.1 CM039052.1 97.8 True indel: indel (<= 5bp) 28721704 28723047 25993986 25995329 NC_060943.1 CM039052.1 98.51 True local misassembly 28728093 28732365 25995613 25999882 NC_060943.1 CM039052.1 97.24 True relocation, inconsistency = -38078 28694454 28696148 26000049 26001742 NC_060943.1 CM039052.1 98.03 True relocation, inconsistency = 30937 28727086 28732302 26001743 26006955 NC_060943.1 CM039052.1 97.58 True relocation, inconsistency = -38078 28694449 28697964 26007180 26010693 NC_060943.1 CM039052.1 98.04 True relocation, inconsistency = 180868 28879044 28884318 26010905 26016175 NC_060943.1 CM039052.1 96.66 True relocation, inconsistency = -30946 28854049 28859787 26016852 26022588 NC_060943.1 CM039052.1 97.09 True relocation, inconsistency = -130886 28729126 28731097 26022813 26024782 NC_060943.1 CM039052.1 97.15 True local misassembly 28734499 28739547 26024783 26029828 NC_060943.1 CM039052.1 97.31 True relocation, inconsistency = 128166 28867714 28868921 26029829 26031036 NC_060943.1 CM039052.1 97.49 True relocation, inconsistency = -32982 28835940 28838054 26031037 26033149 NC_060943.1 CM039052.1 97.1 True relocation, inconsistency = 58827 28896882 28905603 26033150 26041871 NC_060943.1 CM039052.1 97.26 True relocation, inconsistency = -15638 28890058 28891008 26041964 26042914 NC_060943.1 CM039052.1 98.42 True indel: indel (<= 5bp) 28891010 28891728 26042915 26043633 NC_060943.1 CM039052.1 98.47 True indel: indel (<= 5bp) 28891730 28893728 26043634 26045632 NC_060943.1 CM039052.1 97.3 True indel: indel (<= 5bp) 28893730 28894403 26045633 26046306 NC_060943.1 CM039052.1 96.74 True indel: indel (<= 5bp) 28894405 28895128 26046307 26047030 NC_060943.1 CM039052.1 97.65 True indel: indel (<= 5bp) 28895130 28897128 26047031 26049029 NC_060943.1 CM039052.1 97.25 True indel: indel (<= 5bp) 28897130 28900559 26049030 26052459 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = 12920 28913480 28914468 26052460 26053448 NC_060943.1 CM039052.1 97.69 True indel: indel (<= 5bp) 28914470 28915431 26053449 26054410 NC_060943.1 CM039052.1 96.26 True relocation, inconsistency = -276077 28639355 28647685 26054411 26062736 NC_060943.1 CM039052.1 96.41 True relocation, inconsistency = 180870 28828556 28829187 26062737 26063368 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = -108106 28721312 28725203 26063599 26067489 NC_060943.1 CM039052.1 97.38 True relocation, inconsistency = -13939 28711504 28718083 26067729 26074306 NC_060943.1 CM039052.1 96.81 True relocation, inconsistency = 211472 28929556 28935894 26074307 26080646 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = -172380 28763515 28765531 26080647 26082659 NC_060943.1 CM039052.1 98.01 True relocation, inconsistency = -59146 28706386 28709251 26082660 26085526 NC_060943.1 CM039052.1 96.55 True local misassembly 28712792 28717932 26086348 26091485 NC_060943.1 CM039052.1 97.09 True relocation, inconsistency = 211472 28929405 28935894 26091486 26097976 NC_060943.1 CM039052.1 96.86 True relocation, inconsistency = -172380 28763515 28765597 26097977 26100055 NC_060943.1 CM039052.1 98.01 True fake: not a misassembly (possible transposable element) 28731319 28732458 26100445 26101584 NC_060943.1 CM039052.1 98.76 True fake: not a misassembly (possible transposable element) 28766786 28768147 26101585 26102943 NC_060943.1 CM039052.1 96.63 True relocation, inconsistency = 341997 29110145 29118119 26102944 26110912 NC_060943.1 CM039052.1 97.22 True relocation, inconsistency = 473665 29591785 29595095 26110913 26114218 NC_060943.1 CM039052.1 96.44 True relocation, inconsistency = -623907 28971189 28977382 26114219 26120411 NC_060943.1 CM039052.1 96.96 True relocation, inconsistency = -40794 28936589 28938246 26120412 26122069 NC_060943.1 CM039052.1 97.37 True relocation, inconsistency = -219971 28718276 28723297 26122070 26127085 NC_060943.1 CM039052.1 97.29 True relocation, inconsistency = -31619 28691679 28694223 26127086 26129628 NC_060943.1 CM039052.1 97.18 True indel: indel (<= 5bp) 28694449 28697199 26129853 26132599 NC_060943.1 CM039052.1 98.28 True relocation, inconsistency = 94510 28791710 28793197 26132600 26134083 NC_060943.1 CM039052.1 97.18 True local misassembly 28790817 28797042 26134084 26140306 NC_060943.1 CM039052.1 97.19 True relocation, inconsistency = 174409 28971686 28975936 26140541 26144791 NC_060943.1 CM039052.1 96.86 True relocation, inconsistency = 583110 29559047 29564407 26144792 26150150 NC_060943.1 CM039052.1 96.21 True relocation, inconsistency = -842853 28721555 28726303 26150151 26154900 NC_060943.1 CM039052.1 96.97 True relocation, inconsistency = -2679384 26046920 26054598 26154901 26162578 NC_060943.1 CM039052.1 96.72 True relocation, inconsistency = 207128 26261727 26266845 26162579 26167698 NC_060943.1 CM039052.1 96.59 True relocation, inconsistency = 2651089 28917935 28920513 26167699 26170278 NC_060943.1 CM039052.1 97.63 True relocation, inconsistency = -100644 28819902 28827147 26170311 26177560 NC_060943.1 CM039052.1 96.9 True relocation, inconsistency = 142119 28969913 28976964 26178207 26185258 NC_060943.1 CM039052.1 96.66 True relocation, inconsistency = -352908 28624057 28630649 26185259 26191847 NC_060943.1 CM039052.1 96.82 True relocation, inconsistency = 463723 29094746 29103506 26192221 26200982 NC_060943.1 CM039052.1 96.49 True relocation, inconsistency = -2807445 26296681 26301801 26201602 26206716 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = 2345772 28649561 28653126 26208704 26212263 NC_060943.1 CM039052.1 97.06 True relocation, inconsistency = 388946 29042929 29043882 26213120 26214073 NC_060943.1 CM039052.1 96.55 True relocation, inconsistency = -2881632 26162251 26170938 26214074 26222756 NC_060943.1 CM039052.1 96.14 True relocation, inconsistency = 2904051 29074990 29076262 26222757 26224027 NC_060943.1 CM039052.1 96.27 True relocation, inconsistency = -428372 28647891 28651646 26224028 26227782 NC_060943.1 CM039052.1 97.08 True relocation, inconsistency = -2460038 26191609 26199886 26227783 26236051 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = 87744 26287631 26293068 26236052 26241493 NC_060943.1 CM039052.1 96.63 True relocation, inconsistency = 2693581 28986650 28990582 26241494 26245425 NC_060943.1 CM039052.1 96.61 True relocation, inconsistency = -354273 28636310 28643555 26245426 26252676 NC_060943.1 CM039052.1 96.75 True local misassembly 28646618 28652787 26252677 26258843 NC_060943.1 CM039052.1 97.72 True relocation, inconsistency = 436520 29091866 29098774 26261402 26268318 NC_060943.1 CM039052.1 95.85 True relocation, inconsistency = 67654 29169261 29174590 26271151 26276480 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = -204306 28970326 28974412 26276522 26280609 NC_060943.1 CM039052.1 97.09 True relocation, inconsistency = -50649 28923765 28925906 26280611 26282755 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = 225716 29151623 29159897 26282756 26291029 NC_060943.1 CM039052.1 97.05 True relocation, inconsistency = -189005 28970893 28972687 26291030 26292824 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = -335907 28636781 28643324 26292825 26299369 NC_060943.1 CM039052.1 96.76 True fake: not a misassembly (possible transposable element) 28624729 28630346 26299472 26305087 NC_060943.1 CM039052.1 97.17 True fake: not a misassembly (possible transposable element) 28645645 28647422 26305088 26306865 NC_060943.1 CM039052.1 97.14 True relocation, inconsistency = -2383851 26263572 26271934 26306866 26315230 NC_060943.1 CM039052.1 96.51 True relocation, inconsistency = 2719082 28991034 28998510 26315248 26322724 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = 525988 29524499 29527429 26322725 26325657 NC_060943.1 CM039052.1 95.99 True relocation, inconsistency = -3296081 26231349 26235375 26325658 26329683 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = 2749348 28984724 28992386 26329684 26337346 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = -2824171 26168216 26170950 26337347 26340082 NC_060943.1 CM039052.1 96.57 True relocation, inconsistency = 2644990 28815941 28818480 26340083 26342624 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = -229141 28589340 28593114 26342625 26346403 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = -2368226 26224889 26231476 26346404 26352992 NC_060943.1 CM039052.1 96.28 True relocation, inconsistency = 2562358 28793990 28795009 26353148 26354167 NC_060943.1 CM039052.1 97.75 True local misassembly 28795642 28797049 26354461 26355868 NC_060943.1 CM039052.1 97.37 True indel: indel (<= 5bp) 28797050 28798220 26355870 26357040 NC_060943.1 CM039052.1 96.84 True indel: indel (<= 5bp) 28798408 28799613 26357231 26358436 NC_060943.1 CM039052.1 95.85 True relocation, inconsistency = -2532767 26267411 26272285 26359001 26363876 NC_060943.1 CM039052.1 96.72 True relocation, inconsistency = 13264 26285706 26292618 26364033 26370947 NC_060943.1 CM039052.1 96.75 True relocation, inconsistency = 2694937 28987556 28990165 26370948 26373556 NC_060943.1 CM039052.1 96.63 True relocation, inconsistency = -341692 28648474 28654541 26373557 26379623 NC_060943.1 CM039052.1 97.0 True relocation, inconsistency = -2425681 26228861 26233518 26379624 26384284 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = 2466825 28700569 28705375 26384510 26389317 NC_060943.1 CM039052.1 96.51 True local misassembly 28698578 28699642 26389318 26390382 NC_060943.1 CM039052.1 96.97 True relocation, inconsistency = -49987 28649850 28656820 26390577 26397546 NC_060943.1 CM039052.1 96.2 True relocation, inconsistency = -155026 28502295 28506594 26398047 26402348 NC_060943.1 CM039052.1 96.31 True relocation, inconsistency = 1047863 29554458 29557884 26402349 26405776 NC_060943.1 CM039052.1 96.31 True relocation, inconsistency = -1056700 28501185 28508292 26405777 26412888 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = -69349 28438944 28447402 26412889 26421347 NC_060943.1 CM039052.1 97.35 True local misassembly 28444003 28446786 26421348 26424130 NC_060943.1 CM039052.1 97.21 True relocation, inconsistency = -927858 27518929 27526131 26424131 26431331 NC_060943.1 CM039052.1 97.06 True translocation 122266445 122267172 26431332 26432059 NC_060925.1 CM039052.1 96.21 True translocation 26251060 26252129 26434459 26435528 NC_060943.1 CM039052.1 97.21 True relocation, inconsistency = 2545351 28797481 28805855 26435529 26443904 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = -2554864 26251089 26252968 26444002 26445880 NC_060943.1 CM039052.1 96.98 True relocation, inconsistency = 1761179 28014148 28020966 26445881 26452695 NC_060943.1 CM039052.1 97.29 True relocation, inconsistency = 402047 28423014 28424289 26452696 26453971 NC_060943.1 CM039052.1 97.08 True relocation, inconsistency = -1822891 26603378 26609620 26455951 26462193 NC_060943.1 CM039052.1 97.74 True relocation, inconsistency = 174065 26783686 26790679 26462194 26469182 NC_060943.1 CM039052.1 97.1 True relocation, inconsistency = 1328035 28118882 28120225 26469350 26470693 NC_060943.1 CM039052.1 97.49 True relocation, inconsistency = 318746 28438972 28449229 26470694 26480949 NC_060943.1 CM039052.1 97.18 True relocation, inconsistency = -929898 27519332 27523233 26480950 26484850 NC_060943.1 CM039052.1 97.3 True relocation, inconsistency = 23455 27546689 27556719 26484851 26494881 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = 1616638 29173358 29175992 26494882 26497515 NC_060943.1 CM039052.1 96.5 True relocation, inconsistency = -561289 28614704 28621928 26497516 26504737 NC_060943.1 CM039052.1 96.89 True relocation, inconsistency = -1267447 27354482 27358094 26504738 26508348 NC_060943.1 CM039052.1 97.48 True relocation, inconsistency = -314781 27043546 27050982 26508581 26516018 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = -439535 26611448 26616010 26516019 26520582 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = -406305 26211538 26213110 26522415 26523988 NC_060943.1 CM039052.1 96.63 True relocation, inconsistency = 1354700 27568289 27569324 26524467 26525502 NC_060943.1 CM039052.1 97.01 True indel: indel (<= 5bp) 27569325 27570130 26525504 26526309 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -84639 27485492 27492200 26526310 26533015 NC_060943.1 CM039052.1 97.33 True relocation, inconsistency = -912712 26579489 26582584 26533016 26536107 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = 362380 26944965 26956651 26536108 26547793 NC_060943.1 CM039052.1 97.4 True relocation, inconsistency = 1162840 28119492 28127622 26547794 26555931 NC_060943.1 CM039052.1 97.56 True relocation, inconsistency = 1439026 29566649 29570775 26555932 26560054 NC_060943.1 CM039052.1 96.14 True local misassembly 29571796 29576855 26560055 26565114 NC_060943.1 CM039052.1 95.97 True relocation, inconsistency = -8840 29568016 29575296 26565115 26572395 NC_060943.1 CM039052.1 96.0 True relocation, inconsistency = -9520 29565777 29572625 26572396 26579244 NC_060943.1 CM039052.1 95.99 True relocation, inconsistency = -1169883 28407850 28409964 26584352 26586466 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = -705563 27704402 27711871 26586467 26593936 NC_060943.1 CM039052.1 97.34 True relocation, inconsistency = -777751 26934121 26939003 26593937 26598815 NC_060943.1 CM039052.1 97.38 True relocation, inconsistency = 765511 27704515 27711871 26598816 26606170 NC_060943.1 CM039052.1 97.32 True relocation, inconsistency = 681764 28393636 28400437 26606171 26612970 NC_060943.1 CM039052.1 97.45 True local misassembly 28403840 28404639 26612971 26613770 NC_060943.1 CM039052.1 98.26 True relocation, inconsistency = 980363 29385003 29390495 26613771 26619266 NC_060943.1 CM039052.1 96.4 True relocation, inconsistency = -162764 29227732 29230286 26619267 26621817 NC_060943.1 CM039052.1 96.6 True local misassembly 29235310 29236830 26622426 26623946 NC_060943.1 CM039052.1 97.83 True local misassembly 29243291 29243956 26625661 26626326 NC_060943.1 CM039052.1 98.5 True fake: not a misassembly (possible transposable element) 29235310 29236830 26626846 26628366 NC_060943.1 CM039052.1 97.63 True fake: not a misassembly (possible transposable element) 29245991 29246653 26628367 26629029 NC_060943.1 CM039052.1 97.95 True local misassembly 29242436 29243952 26629566 26631082 NC_060943.1 CM039052.1 97.69 True local misassembly 29249736 29250684 26631781 26632730 NC_060943.1 CM039052.1 98.11 True local misassembly 29245972 29246653 26633788 26634469 NC_060943.1 CM039052.1 98.53 True local misassembly 29253436 29254046 26635829 26636440 NC_060943.1 CM039052.1 98.37 True local misassembly 29254822 29255827 26637561 26638566 NC_060943.1 CM039052.1 97.61 True fake: not a misassembly (possible transposable element) 29225377 29226950 26639003 26640576 NC_060943.1 CM039052.1 97.2 True fake: not a misassembly (possible transposable element) 29253161 29254076 26641331 26642247 NC_060943.1 CM039052.1 97.71 True indel: indel (<= 5bp) 29254449 29255823 26642624 26643997 NC_060943.1 CM039052.1 97.6 True local misassembly 29256521 29257478 26644696 26645653 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = -19005 29241931 29243956 26649111 26651133 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = 8477 29253121 29254076 26651821 26652777 NC_060943.1 CM039052.1 97.28 True relocation, inconsistency = -28854 29225258 29226929 26652813 26654484 NC_060943.1 CM039052.1 96.29 True local misassembly 29228517 29230326 26655735 26657544 NC_060943.1 CM039052.1 96.35 True local misassembly 29230695 29232073 26657575 26658953 NC_060943.1 CM039052.1 96.16 True fake: not a misassembly (possible transposable element) 29260565 29262208 26659276 26660923 NC_060943.1 CM039052.1 96.0 True fake: not a misassembly (possible transposable element) 29235310 29236830 26661851 26663371 NC_060943.1 CM039052.1 98.03 True relocation, inconsistency = 369283 29607296 29612179 26664554 26669440 NC_060943.1 CM039052.1 96.52 True local misassembly 29612680 29613698 26669601 26670620 NC_060943.1 CM039052.1 96.74 True local misassembly 29613019 29616280 26670621 26673881 NC_060943.1 CM039052.1 96.75 True local misassembly 29617468 29618796 26674389 26675715 NC_060943.1 CM039052.1 96.84 True local misassembly 29619209 29620325 26676808 26677924 NC_060943.1 CM039052.1 96.6 True fake: not a misassembly (possible transposable element) 29254449 29255819 26678462 26679832 NC_060943.1 CM039052.1 97.61 True fake: not a misassembly (possible transposable element) 29619697 29622042 26679833 26682175 NC_060943.1 CM039052.1 96.21 True relocation, inconsistency = -393409 29229166 29229776 26682708 26683318 NC_060943.1 CM039052.1 97.71 True fake: not a misassembly (possible transposable element) 29259114 29260131 26683465 26684483 NC_060943.1 CM039052.1 97.25 True fake: not a misassembly (possible transposable element) 29229370 29230167 26685292 26686089 NC_060943.1 CM039052.1 97.37 True local misassembly 29233963 29234664 26690228 26690929 NC_060943.1 CM039052.1 97.29 True local misassembly 29235567 29236830 26692173 26693435 NC_060943.1 CM039052.1 98.18 True local misassembly 29241089 29241772 26697366 26698049 NC_060943.1 CM039052.1 96.93 True indel: indel (<= 5bp) 29242013 29243341 26698291 26699619 NC_060943.1 CM039052.1 96.99 True relocation, inconsistency = 10511 29254459 29255823 26700226 26701590 NC_060943.1 CM039052.1 98.02 True indel: indel (<= 5bp) 29256148 29257144 26701916 26702912 NC_060943.1 CM039052.1 96.79 True local misassembly 29254822 29255808 26703309 26704295 NC_060943.1 CM039052.1 97.61 True local misassembly 29256148 29257807 26704296 26705955 NC_060943.1 CM039052.1 96.51 True relocation, inconsistency = -14930 29242951 29243956 26706029 26707034 NC_060943.1 CM039052.1 97.81 True fake: not a misassembly (possible transposable element) 28414846 28415886 26707419 26708459 NC_060943.1 CM039052.1 97.41 True fake: not a misassembly (possible transposable element) 29245665 29246653 26708749 26709736 NC_060943.1 CM039052.1 97.37 True relocation, inconsistency = -22752 29225280 29226771 26711115 26712605 NC_060943.1 CM039052.1 97.12 True local misassembly 29222550 29223580 26712802 26713832 NC_060943.1 CM039052.1 96.02 True local misassembly 29228350 29229683 26713847 26715180 NC_060943.1 CM039052.1 97.38 True local misassembly 29225258 29226770 26715512 26717023 NC_060943.1 CM039052.1 97.22 True local misassembly 29231421 29232396 26717259 26718233 NC_060943.1 CM039052.1 97.54 True local misassembly 29231433 29232396 26718290 26719253 NC_060943.1 CM039052.1 97.2 True local misassembly 29228711 29229965 26719646 26720900 NC_060943.1 CM039052.1 96.65 True fake: not a misassembly (possible transposable element) 29254459 29255827 26720962 26722329 NC_060943.1 CM039052.1 97.74 True fake: not a misassembly (possible transposable element) 29231421 29232353 26722357 26723289 NC_060943.1 CM039052.1 97.21 True relocation, inconsistency = 22054 29254563 29255827 26723445 26724709 NC_060943.1 CM039052.1 98.02 True local misassembly 29258094 29258882 26724937 26725725 NC_060943.1 CM039052.1 98.73 True relocation, inconsistency = -24096 29235281 29236818 26726220 26727757 NC_060943.1 CM039052.1 97.72 True relocation, inconsistency = 366559 29610711 29612994 26735091 26737373 NC_060943.1 CM039052.1 96.06 True local misassembly 29614033 29620325 26738411 26744696 NC_060943.1 CM039052.1 96.2 True local misassembly 29617946 29618927 26744697 26745678 NC_060943.1 CM039052.1 95.4 True indel: indel (<= 5bp) 29618929 29620627 26745679 26747377 NC_060943.1 CM039052.1 96.47 True indel: indel (<= 5bp) 29620629 29621681 26747378 26748430 NC_060943.1 CM039052.1 95.92 True local misassembly 29618816 29622922 26748625 26752731 NC_060943.1 CM039052.1 96.47 True relocation, inconsistency = -654828 28968296 28970082 26752933 26754718 NC_060943.1 CM039052.1 95.47 True relocation, inconsistency = 692200 29662527 29663150 26754963 26755586 NC_060943.1 CM039052.1 96.79 True local misassembly 29662527 29664028 26755982 26757483 NC_060943.1 CM039052.1 96.74 True local misassembly 29664873 29668728 26758327 26762181 NC_060943.1 CM039052.1 97.59 True relocation, inconsistency = -441314 29228333 29231814 26763100 26766582 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = 13917 29245732 29247414 26766583 26768264 NC_060943.1 CM039052.1 97.03 True local misassembly 29248183 29248831 26769038 26769687 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = -157038 29093476 29098897 26771370 26776795 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = -74423 29025447 29027099 26777768 26779420 NC_060943.1 CM039052.1 96.25 True relocation, inconsistency = 62195 29090706 29099864 26780832 26789991 NC_060943.1 CM039052.1 96.28 True local misassembly 29102924 29103506 26789992 26790574 NC_060943.1 CM039052.1 96.52 True relocation, inconsistency = -78532 29025241 29026640 26790841 26792240 NC_060943.1 CM039052.1 97.14 True indel: indel (<= 5bp) 29026642 29027383 26792241 26792982 NC_060943.1 CM039052.1 96.5 True local misassembly 29027724 29028262 26792983 26793521 NC_060943.1 CM039052.1 96.66 True relocation, inconsistency = 64542 29092858 29094269 26793575 26794986 NC_060943.1 CM039052.1 97.59 True indel: indel (<= 5bp) 29094271 29095143 26794987 26795859 NC_060943.1 CM039052.1 97.02 True local misassembly 29093198 29094269 26796321 26797392 NC_060943.1 CM039052.1 97.67 True indel: indel (<= 5bp) 29094271 29095863 26797393 26798985 NC_060943.1 CM039052.1 97.24 True local misassembly 29091036 29095146 26799283 26803422 NC_060943.1 CM039052.1 96.09 True local misassembly 29091240 29092106 26804300 26805166 NC_060943.1 CM039052.1 97.81 True local misassembly 29093198 29094269 26806627 26807698 NC_060943.1 CM039052.1 97.57 True indel: indel (<= 5bp) 29094271 29095863 26807699 26809291 NC_060943.1 CM039052.1 97.18 True indel: indel (> 5bp) 29095864 29097223 26809320 26810679 NC_060943.1 CM039052.1 96.47 True local misassembly 29102766 29104012 26811154 26812400 NC_060943.1 CM039052.1 96.07 True relocation, inconsistency = -8522 29095930 29099794 26812840 26816734 NC_060943.1 CM039052.1 96.2 True local misassembly 29095918 29097223 26817301 26818606 NC_060943.1 CM039052.1 96.25 True relocation, inconsistency = 349219 29446536 29453449 26818700 26825665 NC_060943.1 CM039052.1 95.61 True relocation, inconsistency = -360834 29092804 29094525 26825854 26827575 NC_060943.1 CM039052.1 97.33 True indel: indel (<= 5bp) 29094527 29096192 26827576 26829241 NC_060943.1 CM039052.1 96.88 True local misassembly 29092795 29094525 26829242 26830972 NC_060943.1 CM039052.1 96.94 True indel: indel (<= 5bp) 29094527 29096192 26830973 26832638 NC_060943.1 CM039052.1 96.76 True indel: indel (<= 5bp) 29096195 29097892 26832639 26834336 NC_060943.1 CM039052.1 96.82 True indel: indel (<= 5bp) 29097895 29098406 26834337 26834848 NC_060943.1 CM039052.1 96.48 True indel: indel (<= 5bp) 29098407 29099588 26834853 26836034 NC_060943.1 CM039052.1 95.85 True local misassembly 29093475 29095172 26836035 26837732 NC_060943.1 CM039052.1 96.41 True indel: indel (<= 5bp) 29095175 29097552 26837733 26840110 NC_060943.1 CM039052.1 97.31 True local misassembly 29093815 29099794 26840111 26846120 NC_060943.1 CM039052.1 96.02 True local misassembly 29095918 29097223 26846687 26847992 NC_060943.1 CM039052.1 96.25 True relocation, inconsistency = 349219 29446536 29453449 26848086 26855051 NC_060943.1 CM039052.1 95.6 True relocation, inconsistency = -360834 29092804 29094525 26855240 26856961 NC_060943.1 CM039052.1 97.33 True indel: indel (<= 5bp) 29094527 29096192 26856962 26858627 NC_060943.1 CM039052.1 96.82 True indel: indel (<= 5bp) 29096195 29097925 26858628 26860358 NC_060943.1 CM039052.1 96.76 True indel: indel (<= 5bp) 29098407 29099588 26860843 26862024 NC_060943.1 CM039052.1 95.94 True indel: indel (<= 5bp) 29099986 29101287 26862421 26863722 NC_060943.1 CM039052.1 97.7 True local misassembly 29101630 29103327 26863723 26865420 NC_060943.1 CM039052.1 96.7 True indel: indel (<= 5bp) 29103330 29105027 26865421 26867118 NC_060943.1 CM039052.1 95.52 True indel: indel (<= 5bp) 29105030 29105546 26867119 26867635 NC_060943.1 CM039052.1 96.13 True relocation, inconsistency = 178424 29285169 29285831 26868834 26869496 NC_060943.1 CM039052.1 95.02 True indel: indel (<= 5bp) 29285834 29289405 26869497 26873068 NC_060943.1 CM039052.1 95.91 True local misassembly 29290089 29292293 26873408 26875612 NC_060943.1 CM039052.1 95.83 True indel: indel (<= 5bp) 29292296 29293177 26875613 26876494 NC_060943.1 CM039052.1 96.15 True relocation, inconsistency = 13604 29309029 29310517 26878742 26880230 NC_060943.1 CM039052.1 97.45 True relocation, inconsistency = 18363 29330839 29332073 26882189 26883423 NC_060943.1 CM039052.1 95.47 True indel: indel (<= 5bp) 29332076 29333804 26883424 26885152 NC_060943.1 CM039052.1 95.89 True indel: indel (<= 5bp) 29333806 29334555 26885153 26885902 NC_060943.1 CM039052.1 96.0 True local misassembly 29334811 29336427 26886499 26888115 NC_060943.1 CM039052.1 95.61 True local misassembly 29337589 29338495 26889274 26890180 NC_060943.1 CM039052.1 96.69 True relocation, inconsistency = -247777 29092498 29095172 26891960 26894634 NC_060943.1 CM039052.1 95.93 True indel: indel (<= 5bp) 29095175 29095872 26894635 26895332 NC_060943.1 CM039052.1 98.57 True indel: indel (<= 5bp) 29095873 29097792 26895334 26897253 NC_060943.1 CM039052.1 96.41 True local misassembly 29098407 29099987 26897532 26899112 NC_060943.1 CM039052.1 98.42 True indel: indel (<= 5bp) 29099988 29101075 26899114 26900201 NC_060943.1 CM039052.1 96.32 True relocation, inconsistency = -458958 28642452 28643709 26900536 26901793 NC_060943.1 CM039052.1 96.74 True indel: indel (<= 5bp) 28643711 28646961 26901794 26905044 NC_060943.1 CM039052.1 97.97 True local misassembly 28646962 28648207 26905386 26906631 NC_060943.1 CM039052.1 97.19 True relocation, inconsistency = -2483162 26165069 26167181 26906655 26908767 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = 2738154 28905336 28906109 26908768 26909542 NC_060943.1 CM039052.1 96.99 True relocation, inconsistency = 473827 29380088 29381896 26909694 26911505 NC_060943.1 CM039052.1 96.08 True relocation, inconsistency = -535033 28846864 28847719 26911506 26912361 NC_060943.1 CM039052.1 97.42 True relocation, inconsistency = 34348 28882068 28886313 26912362 26916608 NC_060943.1 CM039052.1 96.68 True relocation, inconsistency = -2624227 26262087 26264677 26916609 26919200 NC_060943.1 CM039052.1 96.47 True fake: not a misassembly (possible transposable element) 26164687 26171178 26919201 26925694 NC_060943.1 CM039052.1 96.54 True fake: not a misassembly (possible transposable element) 26264678 26265739 26926007 26927068 NC_060943.1 CM039052.1 97.59 True relocation, inconsistency = -98630 26167110 26171238 26927069 26931198 NC_060943.1 CM039052.1 97.24 True relocation, inconsistency = 2471256 28642495 28643279 26931199 26931983 NC_060943.1 CM039052.1 96.74 True relocation, inconsistency = -2479419 26163861 26170601 26931984 26938726 NC_060943.1 CM039052.1 97.14 True local misassembly 26164788 26166671 26939376 26941259 NC_060943.1 CM039052.1 97.03 True indel: indel (<= 5bp) 26166672 26167181 26941261 26941770 NC_060943.1 CM039052.1 96.47 True relocation, inconsistency = 2945510 29112877 29115088 26941956 26944168 NC_060943.1 CM039052.1 97.06 True relocation, inconsistency = -2796213 26319031 26320731 26944324 26946024 NC_060943.1 CM039052.1 96.65 True indel: indel (> 5bp) 26321177 26322917 26946477 26948217 NC_060943.1 CM039052.1 97.53 True indel: indel (<= 5bp) 26322920 26324677 26948218 26949975 NC_060943.1 CM039052.1 96.93 True relocation, inconsistency = -147936 26176876 26177896 26950110 26951130 NC_060943.1 CM039052.1 97.94 True local misassembly 26177897 26181073 26951471 26954647 NC_060943.1 CM039052.1 97.46 True relocation, inconsistency = 11901 26192975 26197852 26954648 26959524 NC_060943.1 CM039052.1 97.81 True relocation, inconsistency = 2706185 28905198 28908930 26960685 26964417 NC_060943.1 CM039052.1 97.02 True local misassembly 28904511 28907078 26964418 26966983 NC_060943.1 CM039052.1 96.55 True relocation, inconsistency = -1685631 27221448 27228220 26966984 26973748 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = 1793074 29021295 29025832 26973749 26978288 NC_060943.1 CM039052.1 96.53 True relocation, inconsistency = -30600 28995309 29001571 26978365 26984620 NC_060943.1 CM039052.1 96.62 True relocation, inconsistency = -2725203 26276593 26277612 26984845 26985864 NC_060943.1 CM039052.1 97.49 True local misassembly 26273872 26275502 26985865 26987495 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = 2593622 28869125 28870794 26987496 26989163 NC_060943.1 CM039052.1 97.28 True relocation, inconsistency = -111174 28759621 28765656 26989164 26995203 NC_060943.1 CM039052.1 98.01 True relocation, inconsistency = 204674 28970331 28971925 26995204 26996798 NC_060943.1 CM039052.1 96.79 True local misassembly 28972427 28973270 26996959 26997802 NC_060943.1 CM039052.1 97.87 True indel: indel (<= 5bp) 28973273 28975936 26997803 27000466 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = -215210 28760727 28764297 27000467 27004040 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = 139062 28904188 28911494 27004869 27012171 NC_060943.1 CM039052.1 97.59 True relocation, inconsistency = -13599 28897896 28900477 27012172 27014753 NC_060943.1 CM039052.1 96.99 True relocation, inconsistency = 109481 29009959 29016789 27014754 27021581 NC_060943.1 CM039052.1 96.56 True relocation, inconsistency = -375018 28641772 28644579 27021582 27024387 NC_060943.1 CM039052.1 96.92 True relocation, inconsistency = 83304 28728037 28732861 27024541 27029360 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = 26852 28760060 28765311 27029707 27034960 NC_060943.1 CM039052.1 97.71 True relocation, inconsistency = 125803 28891115 28897533 27034961 27041374 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = -41146 28856560 28857451 27041547 27042438 NC_060943.1 CM039052.1 98.88 True local misassembly 28857792 28860168 27042439 27044815 NC_060943.1 CM039052.1 97.52 True relocation, inconsistency = 9182 28869351 28872751 27044816 27048216 NC_060943.1 CM039052.1 97.03 True fake: not a misassembly (possible transposable element) 28835462 28839703 27048670 27052908 NC_060943.1 CM039052.1 97.24 True fake: not a misassembly (possible transposable element) 28873615 28875771 27053495 27055651 NC_060943.1 CM039052.1 97.45 True local misassembly 28869142 28871823 27055824 27058505 NC_060943.1 CM039052.1 97.8 True local misassembly 28872164 28873221 27058506 27059563 NC_060943.1 CM039052.1 97.83 True local misassembly 28869142 28871939 27059564 27062361 NC_060943.1 CM039052.1 97.86 True local misassembly 28872280 28873904 27062362 27063986 NC_060943.1 CM039052.1 97.72 True relocation, inconsistency = -7821 28866084 28868570 27063987 27066473 NC_060943.1 CM039052.1 97.51 True indel: indel (<= 5bp) 28868571 28869140 27066475 27067044 NC_060943.1 CM039052.1 95.79 True indel: indel (<= 5bp) 28869142 28871823 27067045 27069726 NC_060943.1 CM039052.1 97.69 True local misassembly 28872164 28873435 27069727 27070998 NC_060943.1 CM039052.1 97.7 True fake: not a misassembly (possible transposable element) 28887719 28889763 27070999 27073043 NC_060943.1 CM039052.1 97.8 True fake: not a misassembly (possible transposable element) 28873441 28879377 27073044 27078980 NC_060943.1 CM039052.1 97.0 True relocation, inconsistency = -60864 28818520 28820748 27078987 27081214 NC_060943.1 CM039052.1 98.57 True relocation, inconsistency = 85002 28905751 28909479 27081215 27084943 NC_060943.1 CM039052.1 97.37 True relocation, inconsistency = -188350 28721547 28727534 27085361 27091349 NC_060943.1 CM039052.1 97.28 True relocation, inconsistency = 64593 28792128 28796898 27091350 27096120 NC_060943.1 CM039052.1 96.94 True local misassembly 28793498 28795026 27096121 27097648 NC_060943.1 CM039052.1 98.0 True relocation, inconsistency = -104033 28691567 28695631 27098222 27102286 NC_060943.1 CM039052.1 97.76 True relocation, inconsistency = 276061 28972460 28976166 27103054 27106760 NC_060943.1 CM039052.1 97.41 True relocation, inconsistency = -325707 28650514 28653695 27106815 27109996 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = 173727 28827423 28829230 27109997 27111803 NC_060943.1 CM039052.1 96.83 True relocation, inconsistency = -189711 28639520 28645453 27111804 27117734 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = -175076 28470378 28477417 27117735 27124772 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = 334191 28811662 28813361 27124826 27126525 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = -63909 28749491 28752421 27126564 27129494 NC_060943.1 CM039052.1 96.86 True relocation, inconsistency = 160134 28912786 28917241 27129725 27134179 NC_060943.1 CM039052.1 97.58 True relocation, inconsistency = 20057 28937299 28938994 27134180 27135875 NC_060943.1 CM039052.1 97.59 True translocation 124152955 124153541 27136757 27136171 NC_060925.1 CM039052.1 96.93 True translocation 26166022 26166533 27136758 27137269 NC_060943.1 CM039052.1 95.76 True indel: indel (<= 5bp) 26166535 26168622 27137270 27139357 NC_060943.1 CM039052.1 97.35 True relocation, inconsistency = 2593653 28762276 28765311 27139358 27142394 NC_060943.1 CM039052.1 98.2 True relocation, inconsistency = 392319 29157631 29166089 27142395 27150850 NC_060943.1 CM039052.1 96.39 True local misassembly 29162690 29164273 27150851 27152434 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = 17343 29181617 29189035 27152435 27159847 NC_060943.1 CM039052.1 96.78 True relocation, inconsistency = -2242091 26947264 26956296 27160167 27169190 NC_060943.1 CM039052.1 97.63 True relocation, inconsistency = 437147 27393444 27399854 27169191 27175597 NC_060943.1 CM039052.1 96.47 True relocation, inconsistency = -1011670 26388185 26389892 27175598 27177305 NC_060943.1 CM039052.1 96.01 True indel: indel (<= 5bp) 26389895 26392272 27177306 27179683 NC_060943.1 CM039052.1 97.31 True indel: indel (<= 5bp) 26392275 26393139 27179684 27180548 NC_060943.1 CM039052.1 97.11 True local misassembly 26393414 26395065 27181159 27182810 NC_060943.1 CM039052.1 97.52 True relocation, inconsistency = 1038512 27433578 27438871 27182811 27188100 NC_060943.1 CM039052.1 96.75 True relocation, inconsistency = -42482 27396390 27402612 27188101 27194327 NC_060943.1 CM039052.1 96.87 True relocation, inconsistency = 1731516 29134129 29134854 27194328 27195052 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = -331799 28803803 28806919 27195800 27198916 NC_060943.1 CM039052.1 96.79 True local misassembly 28807260 28809400 27198917 27201057 NC_060943.1 CM039052.1 97.24 True relocation, inconsistency = -139047 28671653 28675522 27202357 27206226 NC_060943.1 CM039052.1 96.98 True relocation, inconsistency = -2509346 26166408 26170598 27206458 27210649 NC_060943.1 CM039052.1 97.11 True relocation, inconsistency = 3001272 29171973 29176634 27210752 27215405 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = -27206 29150019 29154250 27215996 27220224 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = -171321 28983054 28986832 27220349 27224127 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = -333868 28652965 28654330 27224128 27225493 NC_060943.1 CM039052.1 96.63 True local misassembly 28648209 28652739 27225494 27230026 NC_060943.1 CM039052.1 97.07 True relocation, inconsistency = -2303256 26351170 26353450 27231713 27233998 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = 2622167 28975618 28979805 27233999 27238186 NC_060943.1 CM039052.1 96.28 True local misassembly 28980358 28982442 27238738 27240822 NC_060943.1 CM039052.1 97.06 True relocation, inconsistency = 93824 29076267 29079816 27240823 27244374 NC_060943.1 CM039052.1 96.85 True relocation, inconsistency = -2782303 26297619 26298962 27244480 27245823 NC_060943.1 CM039052.1 96.8 True indel: indel (<= 5bp) 26298963 26299796 27245825 27246658 NC_060943.1 CM039052.1 98.08 True indel: indel (<= 5bp) 26299801 26301342 27246659 27248200 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = 2809818 29111161 29116716 27248201 27253757 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = -305281 28811732 28815587 27254054 27257909 NC_060943.1 CM039052.1 96.55 True relocation, inconsistency = -165568 28650020 28651423 27257910 27259313 NC_060943.1 CM039052.1 98.04 True indel: indel (<= 5bp) 28651732 28652739 27259623 27260630 NC_060943.1 CM039052.1 97.62 True translocation 121810082 121811411 27262144 27263474 NC_060925.1 CM039052.1 96.02 True translocation 28646149 28648995 27264922 27267768 NC_060943.1 CM039052.1 98.03 True local misassembly 28649676 28650237 27267769 27268330 NC_060943.1 CM039052.1 98.15 True local misassembly 28650238 28652133 27268671 27270566 NC_060943.1 CM039052.1 97.36 True indel: indel (<= 5bp) 28652135 28652893 27270567 27271325 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = 492607 29145571 29151449 27271396 27277273 NC_060943.1 CM039052.1 96.48 True local misassembly 29147030 29151449 27277274 27281692 NC_060943.1 CM039052.1 96.46 True relocation, inconsistency = -169620 28981830 28982529 27281693 27282392 NC_060943.1 CM039052.1 97.24 True relocation, inconsistency = -334549 28648474 28655691 27282886 27290102 NC_060943.1 CM039052.1 97.1 True fake: not a misassembly (possible transposable element) 29616169 29617281 27290103 27291215 NC_060943.1 CM039052.1 95.98 True fake: not a misassembly (possible transposable element) 28655345 28658732 27291457 27294846 NC_060943.1 CM039052.1 95.86 True relocation, inconsistency = -2304960 26353773 26360696 27294847 27301774 NC_060943.1 CM039052.1 97.0 True relocation, inconsistency = 2289663 28650360 28652964 27301775 27304377 NC_060943.1 CM039052.1 96.81 True relocation, inconsistency = -2392354 26260611 26265119 27304378 27308886 NC_060943.1 CM039052.1 96.39 True relocation, inconsistency = 2377048 28642600 28645681 27309319 27312400 NC_060943.1 CM039052.1 98.41 True local misassembly 28646023 28646691 27312401 27313069 NC_060943.1 CM039052.1 97.46 True indel: indel (<= 5bp) 28646693 28648045 27313070 27314422 NC_060943.1 CM039052.1 97.39 True local misassembly 28647025 28652739 27314423 27320135 NC_060943.1 CM039052.1 96.57 True local misassembly 28647863 28652739 27320700 27325576 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = 489546 29142286 29143390 27325577 27326681 NC_060943.1 CM039052.1 97.02 True local misassembly 29143899 29144802 27327190 27328093 NC_060943.1 CM039052.1 98.12 True indel: indel (<= 5bp) 29144803 29145598 27328095 27328890 NC_060943.1 CM039052.1 98.74 True local misassembly 29145939 29147276 27328891 27330228 NC_060943.1 CM039052.1 95.82 True relocation, inconsistency = -499068 28648209 28652724 27330229 27334746 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = 349853 29002581 29009730 27334750 27341901 NC_060943.1 CM039052.1 96.7 True relocation, inconsistency = -358354 28651377 28652893 27341902 27343418 NC_060943.1 CM039052.1 96.73 True relocation, inconsistency = 327747 28980834 28985588 27343612 27348366 NC_060943.1 CM039052.1 96.74 True relocation, inconsistency = -347132 28639222 28642583 27349132 27352495 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = -2377049 26265535 26266845 27352496 27353808 NC_060943.1 CM039052.1 97.17 True local misassembly 26267540 26269720 27354502 27356682 NC_060943.1 CM039052.1 96.7 True indel: indel (<= 5bp) 26269721 26271436 27356684 27358399 NC_060943.1 CM039052.1 96.74 True indel: indel (<= 5bp) 26271437 26272161 27358401 27359125 NC_060943.1 CM039052.1 97.52 True local misassembly 26272162 26273561 27359466 27360865 NC_060943.1 CM039052.1 97.57 True relocation, inconsistency = 2398820 28672504 28681472 27360988 27369957 NC_060943.1 CM039052.1 96.79 True translocation 121813837 121815953 27369958 27372079 NC_060925.1 CM039052.1 95.98 True translocation 26281722 26288386 27372080 27378744 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = -63593 26224831 26230803 27378782 27384753 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = 2014431 28245235 28248075 27384754 27387595 NC_060943.1 CM039052.1 97.03 True translocation 122318109 122318847 27387596 27388334 NC_060925.1 CM039052.1 97.06 True translocation 28447139 28455148 27388907 27396917 NC_060943.1 CM039052.1 96.84 True relocation, inconsistency = -817387 27637762 27646521 27396918 27405681 NC_060943.1 CM039052.1 97.71 True relocation, inconsistency = 595500 28242022 28246066 27405682 27409726 NC_060943.1 CM039052.1 96.94 True local misassembly 28246067 28246828 27410068 27410829 NC_060943.1 CM039052.1 98.43 True indel: indel (<= 5bp) 28246829 28247695 27410831 27411697 NC_060943.1 CM039052.1 97.35 True relocation, inconsistency = -1946081 26301615 26307919 27411698 27418000 NC_060943.1 CM039052.1 96.46 True relocation, inconsistency = 1062339 27370259 27377386 27418001 27425130 NC_060943.1 CM039052.1 96.96 True relocation, inconsistency = 2114729 29492116 29502671 27425131 27435688 NC_060943.1 CM039052.1 96.01 True relocation, inconsistency = -1140624 28362048 28364908 27435689 27438549 NC_060943.1 CM039052.1 97.04 True relocation, inconsistency = -1581209 26783700 26786907 27438550 27441753 NC_060943.1 CM039052.1 96.78 True relocation, inconsistency = 2013948 28800856 28808104 27441754 27449002 NC_060943.1 CM039052.1 97.74 True relocation, inconsistency = -1287204 27520901 27525686 27449003 27453788 NC_060943.1 CM039052.1 97.29 True relocation, inconsistency = -30934 27494753 27500358 27453789 27459394 NC_060943.1 CM039052.1 97.36 True translocation 125273950 125275982 27461427 27459395 NC_060925.1 CM039052.1 96.07 True translocation 28996043 29001486 27462176 27467617 NC_060943.1 CM039052.1 96.51 True relocation, inconsistency = -1391270 27610217 27611665 27467618 27469066 NC_060943.1 CM039052.1 98.66 True local misassembly 27612005 27614211 27469067 27471273 NC_060943.1 CM039052.1 96.96 True indel: indel (<= 5bp) 27614213 27615735 27471274 27472796 NC_060943.1 CM039052.1 97.57 True relocation, inconsistency = 1553410 29169146 29170340 27472797 27473991 NC_060943.1 CM039052.1 96.92 True indel: indel (<= 5bp) 29170342 29173462 27473992 27477112 NC_060943.1 CM039052.1 97.24 True local misassembly 29173463 29174691 27477453 27478681 NC_060943.1 CM039052.1 97.97 True relocation, inconsistency = -2471537 26703286 26705349 27478813 27480876 NC_060943.1 CM039052.1 97.5 True relocation, inconsistency = 2713010 29418360 29424162 27480877 27486678 NC_060943.1 CM039052.1 96.15 True relocation, inconsistency = -1916915 27507248 27514616 27486679 27494049 NC_060943.1 CM039052.1 97.19 True fake: not a misassembly (possible transposable element) 26731854 26735739 27494119 27498001 NC_060943.1 CM039052.1 97.46 True fake: not a misassembly (possible transposable element) 27518913 27526131 27498002 27505220 NC_060943.1 CM039052.1 97.19 True relocation, inconsistency = 593473 28119688 28123254 27505304 27508870 NC_060943.1 CM039052.1 96.96 True relocation, inconsistency = -1391259 26731996 26737197 27508871 27514073 NC_060943.1 CM039052.1 97.25 True relocation, inconsistency = -332500 26404698 26412640 27514074 27522013 NC_060943.1 CM039052.1 96.97 True relocation, inconsistency = 318904 26731996 26737197 27522465 27527667 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = -332500 26404698 26412878 27527668 27535846 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = 195824 26608818 26616010 27535962 27543155 NC_060943.1 CM039052.1 96.89 True relocation, inconsistency = 813783 27429794 27432997 27543156 27546359 NC_060943.1 CM039052.1 97.43 True relocation, inconsistency = -582621 26850377 26853738 27546360 27549722 NC_060943.1 CM039052.1 96.93 True relocation, inconsistency = 1265159 28118898 28126109 27549723 27556938 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = 379262 28505372 28509398 27556939 27560967 NC_060943.1 CM039052.1 97.74 True relocation, inconsistency = -1455421 27054399 27055024 27561389 27562014 NC_060943.1 CM039052.1 96.96 True indel: indel (<= 5bp) 27055025 27055959 27562016 27562950 NC_060943.1 CM039052.1 97.01 True indel: indel (<= 5bp) 27055960 27056723 27562952 27563715 NC_060943.1 CM039052.1 97.25 True indel: indel (<= 5bp) 27056724 27058367 27563717 27565360 NC_060943.1 CM039052.1 97.43 True relocation, inconsistency = 1232489 28290857 28298577 27565361 27573074 NC_060943.1 CM039052.1 97.38 True local misassembly 28293818 28295254 27573075 27574511 NC_060943.1 CM039052.1 97.1 True local misassembly 28290836 28297897 27574512 27581570 NC_060943.1 CM039052.1 97.24 True relocation, inconsistency = -67276 28231000 28233272 27581949 27584226 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = -1504439 26728834 26736795 27584227 27592190 NC_060943.1 CM039052.1 97.11 True local misassembly 26730678 26735020 27592191 27596535 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = 2831303 29566324 29574302 27596536 27604514 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = -8840 29565676 29570775 27604728 27609827 NC_060943.1 CM039052.1 96.13 True local misassembly 29565676 29574302 27609828 27618454 NC_060943.1 CM039052.1 96.12 True local misassembly 29570223 29573835 27618455 27622067 NC_060943.1 CM039052.1 96.05 True relocation, inconsistency = -8160 29565676 29572956 27622068 27629344 NC_060943.1 CM039052.1 95.96 True local misassembly 29571597 29574515 27629345 27632263 NC_060943.1 CM039052.1 96.1 True local misassembly 29569416 29575295 27632264 27638143 NC_060943.1 CM039052.1 96.09 True relocation, inconsistency = -613025 28962271 28964491 27638144 27640364 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = 604865 29569416 29574515 27640424 27645519 NC_060943.1 CM039052.1 96.0 True local misassembly 29569416 29575314 27645520 27651416 NC_060943.1 CM039052.1 96.03 True relocation, inconsistency = -353641 29221674 29223208 27651417 27652950 NC_060943.1 CM039052.1 96.27 True local misassembly 29223957 29226596 27653700 27656340 NC_060943.1 CM039052.1 96.55 True relocation, inconsistency = -892010 28336693 28338274 27658447 27660028 NC_060943.1 CM039052.1 97.57 True relocation, inconsistency = -633873 27704402 27711871 27660029 27667498 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = -430009 27281863 27285777 27667499 27671413 NC_060943.1 CM039052.1 97.57 True translocation 121990505 121991127 27671414 27672036 NC_060925.1 CM039052.1 97.28 True local misassembly 121990108 121991610 27672037 27673539 NC_060925.1 CM039052.1 97.14 True local misassembly 121990108 121990836 27673737 27674465 NC_060925.1 CM039052.1 97.09 True translocation 27229331 27230458 27674466 27675593 NC_060943.1 CM039052.1 97.47 True local misassembly 27227399 27235458 27675594 27683653 NC_060943.1 CM039052.1 97.63 True relocation, inconsistency = 2182403 29417862 29421931 27683654 27687724 NC_060943.1 CM039052.1 96.49 True relocation, inconsistency = -2194642 27227582 27235423 27688017 27695858 NC_060943.1 CM039052.1 97.42 True relocation, inconsistency = 2148915 29384880 29389697 27696400 27701220 NC_060943.1 CM039052.1 96.27 True relocation, inconsistency = -163104 29227719 29229993 27702346 27704620 NC_060943.1 CM039052.1 96.7 True relocation, inconsistency = -2001108 27229259 27235292 27704994 27711027 NC_060943.1 CM039052.1 97.43 True relocation, inconsistency = 2332654 29567996 29574135 27711077 27717216 NC_060943.1 CM039052.1 96.38 True local misassembly 29568016 29575295 27717217 27724496 NC_060943.1 CM039052.1 96.36 True relocation, inconsistency = -167762 29407534 29412336 27724497 27729295 NC_060943.1 CM039052.1 96.27 True relocation, inconsistency = -188260 29224077 29226163 27729296 27731383 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = -889630 28336534 28341890 27731384 27736739 NC_060943.1 CM039052.1 97.3 True relocation, inconsistency = -671950 27669986 27678272 27736785 27745069 NC_060943.1 CM039052.1 97.04 True relocation, inconsistency = 743622 28421895 28425010 27745070 27748184 NC_060943.1 CM039052.1 97.52 True relocation, inconsistency = 980723 29405734 29412317 27748185 27754766 NC_060943.1 CM039052.1 96.52 True relocation, inconsistency = -2190732 27221586 27224678 27754767 27757859 NC_060943.1 CM039052.1 97.28 True local misassembly 27227399 27235292 27757860 27765752 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = 2331974 29568016 29574302 27766502 27772788 NC_060943.1 CM039052.1 96.15 True local misassembly 29568863 29572812 27772789 27776738 NC_060943.1 CM039052.1 96.01 True local misassembly 29568053 29575314 27776739 27784000 NC_060943.1 CM039052.1 96.28 True local misassembly 29569486 29575314 27784292 27790120 NC_060943.1 CM039052.1 96.14 True local misassembly 29569195 29570375 27790121 27791301 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -194611 29375765 29381263 27791302 27796804 NC_060943.1 CM039052.1 96.57 True relocation, inconsistency = -881804 28499460 28506187 27796805 27803532 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = -167872 28338316 28340272 27803533 27805490 NC_060943.1 CM039052.1 97.54 True local misassembly 28339933 28345284 27805491 27810850 NC_060943.1 CM039052.1 97.44 True relocation, inconsistency = -2373809 25973321 25975104 27812696 27814478 NC_060943.1 CM039052.1 95.99 True relocation, inconsistency = 1284437 27259542 27266231 27814479 27821167 NC_060943.1 CM039052.1 97.06 True relocation, inconsistency = 952430 28218662 28219641 27821168 27822147 NC_060943.1 CM039052.1 98.43 True relocation, inconsistency = 1518508 29738150 29740398 27822148 27824395 NC_060943.1 CM039052.1 96.49 True relocation, inconsistency = -175003 29566356 29572419 27825356 27831418 NC_060943.1 CM039052.1 96.31 True relocation, inconsistency = -1278957 28293805 28298933 27831761 27836889 NC_060943.1 CM039052.1 97.41 True relocation, inconsistency = 1270457 29569391 29577083 27836890 27844578 NC_060943.1 CM039052.1 96.0 True relocation, inconsistency = -11560 29565676 29569882 27844731 27848937 NC_060943.1 CM039052.1 96.48 True fake: not a misassembly (possible transposable element) 29139393 29140625 27848938 27850169 NC_060943.1 CM039052.1 97.02 True fake: not a misassembly (possible transposable element) 29565676 29569757 27850170 27854251 NC_060943.1 CM039052.1 96.55 True local misassembly 29569418 29571421 27854252 27856255 NC_060943.1 CM039052.1 96.1 True local misassembly 29568022 29575314 27856256 27863548 NC_060943.1 CM039052.1 96.23 True local misassembly 29572255 29575314 27863549 27866608 NC_060943.1 CM039052.1 96.32 True relocation, inconsistency = -2116795 27458749 27461760 27866838 27869849 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = 2106255 29568016 29577085 27869850 27878907 NC_060943.1 CM039052.1 95.87 True relocation, inconsistency = -7480 29569606 29572117 27878908 27881419 NC_060943.1 CM039052.1 96.21 True local misassembly 29568038 29573435 27881420 27886817 NC_060943.1 CM039052.1 96.23 True local misassembly 29567996 29575146 27886818 27893964 NC_060943.1 CM039052.1 96.01 True local misassembly 29568347 29575146 27893965 27900760 NC_060943.1 CM039052.1 96.05 True local misassembly 29569707 29571198 27900761 27902252 NC_060943.1 CM039052.1 96.27 True relocation, inconsistency = -1277257 28293942 28302358 27902253 27910669 NC_060943.1 CM039052.1 97.11 True relocation, inconsistency = 1263997 29566356 29575314 27910670 27919628 NC_060943.1 CM039052.1 96.33 True local misassembly 29570895 29574536 27919629 27923270 NC_060943.1 CM039052.1 96.3 True relocation, inconsistency = -1987630 27586907 27594648 27923271 27931011 NC_060943.1 CM039052.1 97.16 True relocation, inconsistency = 441179 28035828 28040154 27931012 27935338 NC_060943.1 CM039052.1 97.3 True relocation, inconsistency = 1365770 29405925 29412317 27935339 27941731 NC_060943.1 CM039052.1 96.37 True relocation, inconsistency = -3443209 25973595 25975155 27946218 27947778 NC_060943.1 CM039052.1 96.41 True relocation, inconsistency = 3592272 29568016 29575314 27948367 27955665 NC_060943.1 CM039052.1 96.41 True relocation, inconsistency = -1362884 28213057 28215561 27956292 27958797 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = 580546 28796108 28803359 27958798 27966056 NC_060943.1 CM039052.1 96.89 True relocation, inconsistency = 424620 29227980 29229993 27966057 27968070 NC_060943.1 CM039052.1 96.3 True relocation, inconsistency = -810479 28420591 28427349 27969147 27975906 NC_060943.1 CM039052.1 97.84 True relocation, inconsistency = 491607 28918957 28920925 27975907 27977877 NC_060943.1 CM039052.1 96.78 True relocation, inconsistency = 644981 29566356 29575146 27978327 27987117 NC_060943.1 CM039052.1 96.21 True local misassembly 29570387 29573477 27987118 27990208 NC_060943.1 CM039052.1 96.26 True relocation, inconsistency = -1538972 28034506 28040865 27990209 27996568 NC_060943.1 CM039052.1 97.75 True relocation, inconsistency = -2082197 25958669 25959237 27996569 27997137 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = 3470069 29430939 29433318 27998770 28001149 NC_060943.1 CM039052.1 96.76 True local misassembly 29433490 29435188 28001150 28002848 NC_060943.1 CM039052.1 96.17 True relocation, inconsistency = -3463102 25972087 25972667 28002849 28003429 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = 1280017 27253935 27256443 28004680 28007188 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = 448029 27704473 27711871 28007189 28014587 NC_060943.1 CM039052.1 97.46 True relocation, inconsistency = 1854706 29566578 29569882 28014588 28017892 NC_060943.1 CM039052.1 96.55 True relocation, scaffold gap is present, inconsistency = -1536208 28034506 28040534 28018724 28024749 NC_060943.1 CM039052.1 97.73 True relocation, inconsistency = 1369850 29412918 29415297 28027283 28029662 NC_060943.1 CM039052.1 96.76 True local misassembly 29415469 29417167 28029663 28031361 NC_060943.1 CM039052.1 96.23 True relocation, inconsistency = -3445081 25972087 25972667 28031362 28031942 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = 1280017 27253935 27256443 28033193 28035701 NC_060943.1 CM039052.1 97.39 True relocation, inconsistency = 448029 27704473 27711871 28035702 28043100 NC_060943.1 CM039052.1 97.46 True relocation, inconsistency = 1854706 29566578 29571305 28043101 28047828 NC_060943.1 CM039052.1 96.43 True relocation, inconsistency = -663342 28910154 28912215 28050019 28052076 NC_060943.1 CM039052.1 96.94 True relocation, inconsistency = 311739 29224370 29226380 28052492 28054502 NC_060943.1 CM039052.1 96.67 True relocation, inconsistency = -3255289 25973321 25975214 28056732 28058625 NC_060943.1 CM039052.1 95.99 True relocation, inconsistency = 3593972 29569391 29575314 28058830 28064753 NC_060943.1 CM039052.1 96.4 True relocation, inconsistency = -667760 28910154 28912143 28067353 28069342 NC_060943.1 CM039052.1 97.64 True translocation 121990738 121991604 28069343 28070209 NC_060925.1 CM039052.1 96.93 True translocation 29119305 29122563 28072546 28075807 NC_060943.1 CM039052.1 96.54 True relocation, inconsistency = -2001065 27121880 27130465 28076189 28084770 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = 2439036 29569502 29570532 28084771 28085801 NC_060943.1 CM039052.1 96.23 True local misassembly 29568153 29575314 28085802 28092961 NC_060943.1 CM039052.1 96.37 True relocation, inconsistency = -11220 29565552 29566452 28094419 28095319 NC_060943.1 CM039052.1 96.38 True local misassembly 29568153 29575146 28095320 28102307 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -2347954 27227399 27230118 28102514 28105233 NC_060943.1 CM039052.1 97.19 True local misassembly 27227399 27235292 28105234 28113127 NC_060943.1 CM039052.1 97.23 True relocation, inconsistency = 1104680 28339973 28343505 28113128 28116664 NC_060943.1 CM039052.1 97.59 True relocation, inconsistency = -673309 27670197 27678385 28116665 28124853 NC_060943.1 CM039052.1 97.0 True relocation, inconsistency = 659034 28337420 28340949 28124854 28128387 NC_060943.1 CM039052.1 97.34 True relocation, inconsistency = -49619 28291331 28296735 28128388 28133793 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = -1069337 27227399 27235292 28133794 28141687 NC_060943.1 CM039052.1 97.1 True relocation, inconsistency = 1106377 28341670 28345284 28141688 28145308 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = 1135166 29480451 29481233 28145309 28146091 NC_060943.1 CM039052.1 96.44 True relocation, inconsistency = -2104527 27376792 27383244 28146177 28152635 NC_060943.1 CM039052.1 97.12 True relocation, inconsistency = -994337 26389297 26396729 28153025 28160455 NC_060943.1 CM039052.1 96.68 True relocation, inconsistency = 1639793 28036523 28038420 28160456 28162353 NC_060943.1 CM039052.1 97.73 True relocation, inconsistency = -686248 27352173 27358545 28162354 28168726 NC_060943.1 CM039052.1 97.18 True relocation, inconsistency = 676048 28034594 28040602 28168727 28174735 NC_060943.1 CM039052.1 97.51 True relocation, inconsistency = 1526052 29566888 29570435 28174969 28178516 NC_060943.1 CM039052.1 96.14 True local misassembly 29566356 29577085 28178517 28189246 NC_060943.1 CM039052.1 96.06 True relocation, inconsistency = -10200 29566886 29568832 28189247 28191193 NC_060943.1 CM039052.1 96.31 True local misassembly 29569513 29573038 28191194 28194719 NC_060943.1 CM039052.1 96.15 True relocation, inconsistency = -1278617 28294422 28301912 28194720 28202210 NC_060943.1 CM039052.1 97.38 True relocation, inconsistency = -2338814 25963122 25964508 28202234 28203620 NC_060943.1 CM039052.1 95.75 True relocation, inconsistency = 384955 26352337 26354514 28206494 28208671 NC_060943.1 CM039052.1 97.09 True relocation, inconsistency = 2820353 29174868 29179344 28208672 28213146 NC_060943.1 CM039052.1 96.02 True relocation, inconsistency = -191040 28988902 28992728 28213744 28217572 NC_060943.1 CM039052.1 98.09 True relocation, inconsistency = -20405 28972577 28977765 28217826 28223013 NC_060943.1 CM039052.1 97.05 True relocation, inconsistency = -761076 28216690 28217847 28223014 28224171 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = 874269 29092117 29094429 28224172 28226482 NC_060943.1 CM039052.1 96.65 True relocation, inconsistency = -439238 28655192 28659877 28226483 28231169 NC_060943.1 CM039052.1 96.82 True relocation, inconsistency = -281800 28378078 28379703 28231170 28232795 NC_060943.1 CM039052.1 97.58 True relocation, inconsistency = -146783 28232921 28240806 28232796 28240678 NC_060943.1 CM039052.1 96.86 True relocation, inconsistency = -1809397 26431410 26434374 28240679 28243641 NC_060943.1 CM039052.1 96.53 True relocation, inconsistency = 2096217 28530592 28539213 28243642 28252257 NC_060943.1 CM039052.1 97.4 True relocation, inconsistency = -100289 28438925 28444614 28252258 28257943 NC_060943.1 CM039052.1 96.71 True relocation, inconsistency = 214856 28659471 28660130 28257944 28258604 NC_060943.1 CM039052.1 97.4 True local misassembly 28655713 28658858 28258605 28261750 NC_060943.1 CM039052.1 97.84 True relocation, inconsistency = 329110 28988194 28990739 28261976 28264520 NC_060943.1 CM039052.1 97.31 True relocation, inconsistency = -400843 28589897 28594992 28264521 28269619 NC_060943.1 CM039052.1 96.91 True relocation, inconsistency = -2130209 26464784 26472001 28269620 28276834 NC_060943.1 CM039052.1 97.26 True relocation, inconsistency = 2516095 28988097 28990739 28276835 28279476 NC_060943.1 CM039052.1 97.07 True relocation, inconsistency = -400843 28589897 28593009 28279477 28282592 NC_060943.1 CM039052.1 96.84 True local misassembly 28589274 28596048 28282593 28289370 NC_060943.1 CM039052.1 96.57 True relocation, inconsistency = -1219513 27376536 27383711 28289371 28296548 NC_060943.1 CM039052.1 97.06 True relocation, inconsistency = 1209319 28593031 28595417 28296549 28298935 NC_060943.1 CM039052.1 96.22 True relocation, inconsistency = 392688 28988190 28990428 28299020 28301258 NC_060943.1 CM039052.1 97.21 True relocation, inconsistency = -780800 28209629 28215329 28301259 28306958 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = 442851 28658181 28662109 28306959 28310888 NC_060943.1 CM039052.1 97.27 True relocation, inconsistency = 421566 29083676 29085864 28310889 28313077 NC_060943.1 CM039052.1 96.74 True relocation, inconsistency = 108788 29194981 29196838 28313406 28315264 NC_060943.1 CM039052.1 96.99 True relocation, inconsistency = -208383 28988456 28993068 28315265 28319878 NC_060943.1 CM039052.1 97.34 True relocation, inconsistency = -340328 28653191 28656480 28320329 28323618 NC_060943.1 CM039052.1 96.29 True local misassembly 28657114 28658051 28324253 28325190 NC_060943.1 CM039052.1 97.86 True relocation, inconsistency = -2339984 26318068 26323635 28325191 28330760 NC_060943.1 CM039052.1 96.56 True relocation, inconsistency = 2348149 28671785 28673115 28330761 28332091 NC_060943.1 CM039052.1 97.84 True relocation, inconsistency = -17340 28656093 28659538 28332409 28335854 NC_060943.1 CM039052.1 97.33 True relocation, inconsistency = -217576 28442065 28447402 28335957 28341292 NC_060943.1 CM039052.1 96.29 True relocation, inconsistency = 546006 28993409 28995926 28341293 28343808 NC_060943.1 CM039052.1 96.6 True relocation, inconsistency = 155676 29152643 29156201 28344849 28348405 NC_060943.1 CM039052.1 97.61 True relocation, inconsistency = -498728 28657474 28659026 28348406 28349956 NC_060943.1 CM039052.1 98.28 True relocation, inconsistency = 464386 29123413 29125900 28349957 28352445 NC_060943.1 CM039052.1 98.03 True relocation, inconsistency = -100593 29025834 29028300 28352972 28355436 NC_060943.1 CM039052.1 96.56 True relocation, inconsistency = -39780 28988521 28993068 28355437 28359984 NC_060943.1 CM039052.1 97.63 True relocation, inconsistency = -337608 28655461 28659013 28359985 28363536 NC_060943.1 CM039052.1 97.34 True fake: not a misassembly (possible transposable element) 28988125 28992863 28363537 28368276 NC_060943.1 CM039052.1 97.53 True fake: not a misassembly (possible transposable element) 28657636 28659470 28368277 28370108 NC_060943.1 CM039052.1 97.12 True local misassembly 28655615 28656748 28370332 28371465 NC_060943.1 CM039052.1 97.0 True local misassembly 28657089 28658314 28371466 28372691 NC_060943.1 CM039052.1 97.47 True indel: indel (<= 5bp) 28658315 28658992 28372694 28373371 NC_060943.1 CM039052.1 96.46 True local misassembly 28654936 28658180 28373392 28376637 NC_060943.1 CM039052.1 97.29 True relocation, inconsistency = 23802 28682194 28686670 28376849 28381323 NC_060943.1 CM039052.1 96.62 True relocation, inconsistency = 434801 29121472 29125536 28381324 28385389 NC_060943.1 CM039052.1 97.46 True relocation, inconsistency = 26183 29151720 29157856 28385390 28391524 NC_060943.1 CM039052.1 96.77 True local misassembly 29153392 29158265 28392503 28397376 NC_060943.1 CM039052.1 97.58 True relocation, inconsistency = -73086 29085503 29088692 28397700 28400889 NC_060943.1 CM039052.1 96.83 True relocation, inconsistency = 145840 29235664 29237576 28402021 28403932 NC_060943.1 CM039052.1 97.49 True fake: not a misassembly (possible transposable element) 29224326 29225045 28403933 28404652 NC_060943.1 CM039052.1 96.91 True fake: not a misassembly (possible transposable element) 29234772 29239158 28404865 28409255 NC_060943.1 CM039052.1 97.11 True relocation, inconsistency = -10185 29228974 29232031 28409256 28412314 NC_060943.1 CM039052.1 97.19 True local misassembly 29228294 29229791 28412315 28413812 NC_060943.1 CM039052.1 97.92 True local misassembly 29227903 29229604 28413964 28415665 NC_060943.1 CM039052.1 97.42 True relocation, inconsistency = -2970301 26259304 26261957 28415666 28418318 NC_060943.1 CM039052.1 96.37 True relocation, inconsistency = 2448116 28710074 28716089 28418319 28424338 NC_060943.1 CM039052.1 96.36 True relocation, inconsistency = 427326 29143670 29148599 28424593 28429523 NC_060943.1 CM039052.1 96.84 True fake: not a misassembly (possible transposable element) 29131259 29132085 28429524 28430350 NC_060943.1 CM039052.1 96.63 True fake: not a misassembly (possible transposable element) 29153392 29158265 28430576 28435449 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = -750279 28408216 28417069 28435679 28444542 NC_060943.1 CM039052.1 97.13 True relocation, inconsistency = 817269 29235091 29236447 28445295 28446651 NC_060943.1 CM039052.1 96.68 True fake: not a misassembly (possible transposable element) 29251092 29252298 28449771 28450976 NC_060943.1 CM039052.1 96.93 True fake: not a misassembly (possible transposable element) 29240423 29241225 28450977 28451780 NC_060943.1 CM039052.1 96.89 True fake: not a misassembly (possible transposable element) 29253102 29254448 28451781 28453132 NC_060943.1 CM039052.1 97.72 True fake: not a misassembly (possible transposable element) 29242918 29244921 28453133 28455132 NC_060943.1 CM039052.1 97.6 True local misassembly 29245637 29247414 28455853 28457630 NC_060943.1 CM039052.1 96.74 True fake: not a misassembly (possible transposable element) 29223798 29225904 28463562 28465669 NC_060943.1 CM039052.1 96.2 True fake: not a misassembly (possible transposable element) 29256430 29257230 28465987 28466787 NC_060943.1 CM039052.1 96.47 True relocation, inconsistency = 405326 29662557 29664162 28466788 28468392 NC_060943.1 CM039052.1 97.14 True relocation, inconsistency = -435536 29228627 29229810 28468393 28469576 NC_060943.1 CM039052.1 96.79 True indel: indel (<= 5bp) 29229812 29230326 28469577 28470091 NC_060943.1 CM039052.1 97.09 True indel: stretch of mismatches 29230376 29231769 28470141 28471534 NC_060943.1 CM039052.1 97.63 True local misassembly 29231770 29232413 28471875 28472518 NC_060943.1 CM039052.1 97.05 True fake: not a misassembly (possible transposable element) 29670219 29670959 28474445 28475186 NC_060943.1 CM039052.1 98.65 True fake: not a misassembly (possible transposable element) 29234772 29237497 28475218 28477944 NC_060943.1 CM039052.1 96.69 True fake: not a misassembly (possible transposable element) 29253102 29257478 28477945 28482316 NC_060943.1 CM039052.1 97.4 True fake: not a misassembly (possible transposable element) 29249328 29250347 28484002 28485021 NC_060943.1 CM039052.1 96.76 True local misassembly 29254656 29255905 28486284 28487529 NC_060943.1 CM039052.1 97.04 True relocation, inconsistency = -166876 29089208 29090412 28487708 28488912 NC_060943.1 CM039052.1 96.6 True indel: indel (<= 5bp) 29090418 29091446 28488921 28489949 NC_060943.1 CM039052.1 96.31 True local misassembly 29086010 29090095 28489978 28494063 NC_060943.1 CM039052.1 96.45 True indel: indel (> 5bp) 29090418 29092109 28494417 28496108 NC_060943.1 CM039052.1 96.99 True indel: indel (<= 5bp) 29092115 29092798 28496117 28496800 NC_060943.1 CM039052.1 95.76 True local misassembly 29089153 29098744 28496917 28506546 NC_060943.1 CM039052.1 95.99 True relocation, inconsistency = -8861 29090767 29099777 28507430 28516472 NC_060943.1 CM039052.1 96.05 True local misassembly 29094342 29101068 28516473 28523228 NC_060943.1 CM039052.1 96.26 True relocation, inconsistency = -8155 29092914 29098263 28523229 28528576 NC_060943.1 CM039052.1 96.85 True local misassembly 29097335 29103673 28529348 28535687 NC_060943.1 CM039052.1 96.51 True relocation, inconsistency = -13589 29090085 29098086 28535688 28543690 NC_060943.1 CM039052.1 96.43 True relocation, inconsistency = 119675 29217762 29220024 28543691 28545953 NC_060943.1 CM039052.1 97.33 True relocation, inconsistency = -2892098 26327927 26335247 28545954 28553268 NC_060943.1 CM039052.1 97.15 True relocation, inconsistency = 2337263 28672511 28675862 28553269 28556619 NC_060943.1 CM039052.1 97.79 True local misassembly 28672334 28675522 28558530 28561718 NC_060943.1 CM039052.1 97.55 True relocation, inconsistency = 240371 28915894 28918322 28561719 28564147 NC_060943.1 CM039052.1 97.3 True relocation, inconsistency = -248191 28672334 28675522 28566350 28569538 NC_060943.1 CM039052.1 97.55 True relocation, inconsistency = 231528 28907311 28912023 28569799 28574511 NC_060943.1 CM039052.1 97.25 True relocation, inconsistency = -209428 28702596 28708225 28574512 28580144 NC_060943.1 CM039052.1 97.07 True relocation, inconsistency = 186991 28895217 28896853 28580145 28581782 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = 666739 29564090 29569034 28582280 28587224 NC_060943.1 CM039052.1 96.48 True relocation, inconsistency = -3447064 26121971 26123263 28587225 28588517 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = 2524648 28647912 28651411 28588518 28592016 NC_060943.1 CM039052.1 97.69 True relocation, inconsistency = -2376373 26275264 26280787 28592242 28597764 NC_060943.1 CM039052.1 98.23 True relocation, inconsistency = -27202 26254522 26255396 28598701 28599575 NC_060943.1 CM039052.1 96.22 True relocation, inconsistency = 17000 26272397 26276367 28599576 28603545 NC_060943.1 CM039052.1 97.48 True local misassembly 26277729 26279220 28603546 28605037 NC_060943.1 CM039052.1 98.52 True relocation, inconsistency = -15643 26263593 26272532 28605053 28613995 NC_060943.1 CM039052.1 97.72 True relocation, inconsistency = 2839061 29111594 29114748 28613996 28617151 NC_060943.1 CM039052.1 96.83 True relocation, inconsistency = 163470 29278782 29280788 28617715 28619721 NC_060943.1 CM039052.1 96.71 True relocation, inconsistency = -8838 29273635 29275665 28621406 28623435 NC_060943.1 CM039052.1 96.41 True indel: stretch of mismatches 29275996 29278897 28623766 28626668 NC_060943.1 CM039052.1 96.52 True local misassembly 29279826 29286139 28627597 28633910 NC_060943.1 CM039052.1 95.96 True local misassembly 29282584 29289840 28634435 28641691 NC_060943.1 CM039052.1 96.28 True local misassembly 29293241 29293995 28641692 28642446 NC_060943.1 CM039052.1 96.18 True local misassembly 29290646 29292125 28642836 28644315 NC_060943.1 CM039052.1 97.16 True local misassembly 29292388 29294846 28644910 28647368 NC_060943.1 CM039052.1 96.34 True indel: indel (<= 5bp) 29294851 29300918 28647369 28653436 NC_060943.1 CM039052.1 95.91 True local misassembly 29301259 29302618 28653437 28654796 NC_060943.1 CM039052.1 95.44 True local misassembly 29302959 29305873 28654797 28657711 NC_060943.1 CM039052.1 95.49 True relocation, inconsistency = -15300 29290574 29293769 28657712 28660907 NC_060943.1 CM039052.1 96.12 True relocation, inconsistency = -11900 29282210 29288669 28661248 28667707 NC_060943.1 CM039052.1 96.69 True local misassembly 29288670 29293149 28668048 28672527 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = 12240 29307329 29311109 28674467 28678247 NC_060943.1 CM039052.1 96.61 True local misassembly 29311110 29312289 28678588 28679767 NC_060943.1 CM039052.1 97.03 True relocation, inconsistency = 15980 29329769 29335491 28681267 28686989 NC_060943.1 CM039052.1 96.19 True local misassembly 29335832 29338093 28686990 28689251 NC_060943.1 CM039052.1 96.33 True local misassembly 29338094 29341001 28689591 28692498 NC_060943.1 CM039052.1 95.6 True relocation, inconsistency = -27540 29313554 29314927 28692591 28693964 NC_060943.1 CM039052.1 96.36 True local misassembly 29315268 29317288 28693965 28695985 NC_060943.1 CM039052.1 96.59 True local misassembly 29317629 29325049 28695986 28703406 NC_060943.1 CM039052.1 96.09 True local misassembly 29325050 29326727 28703747 28705424 NC_060943.1 CM039052.1 96.84 True local misassembly 29326728 29328599 28705765 28707636 NC_060943.1 CM039052.1 96.37 True relocation, inconsistency = 9860 29338460 29339329 28707637 28708506 NC_060943.1 CM039052.1 96.38 True local misassembly 29339670 29340698 28708507 28709535 NC_060943.1 CM039052.1 96.79 True local misassembly 29340699 29342441 28709876 28711618 NC_060943.1 CM039052.1 96.67 True local misassembly 29342782 29345233 28711619 28714070 NC_060943.1 CM039052.1 95.11 True local misassembly 29345234 29346909 28714411 28716086 NC_060943.1 CM039052.1 96.66 True fake: not a misassembly (possible transposable element) 29336256 29337675 28716313 28717732 NC_060943.1 CM039052.1 96.06 True fake: not a misassembly (possible transposable element) 29349149 29353665 28718326 28722842 NC_060943.1 CM039052.1 96.17 True indel: indel (<= 5bp) 29353666 29354531 28722847 28723712 NC_060943.1 CM039052.1 97.0 True local misassembly 29355693 29357019 28724194 28725520 NC_060943.1 CM039052.1 96.08 True indel: indel (<= 5bp) 29357020 29358079 28725523 28726582 NC_060943.1 CM039052.1 95.47 True indel: indel (<= 5bp) 29358080 29360455 28726587 28728962 NC_060943.1 CM039052.1 96.25 True local misassembly 29361304 29362109 28729815 28730620 NC_060943.1 CM039052.1 98.76 True indel: indel (<= 5bp) 29362112 29362789 28730621 28731298 NC_060943.1 CM039052.1 97.64 True local misassembly 29363198 29366189 28732045 28735036 NC_060943.1 CM039052.1 98.33 True indel: indel (<= 5bp) 29366192 29366740 28735037 28735585 NC_060943.1 CM039052.1 97.81 True local misassembly 29366741 29367618 28735926 28736803 NC_060943.1 CM039052.1 98.63 True relocation, inconsistency = -96884 29272662 29275673 28738731 28741740 NC_060943.1 CM039052.1 97.24 True local misassembly 29269876 29271460 28742063 28743647 NC_060943.1 CM039052.1 97.1 True local misassembly 29274790 29275381 28744253 28744844 NC_060943.1 CM039052.1 96.35 True local misassembly 29272662 29274297 28744845 28746480 NC_060943.1 CM039052.1 97.07 True relocation, inconsistency = 91446 29365744 29368288 28746481 28749025 NC_060943.1 CM039052.1 95.91 True local misassembly 29368874 29371358 28749611 28752091 NC_060943.1 CM039052.1 96.38 True relocation, inconsistency = -102662 29271696 29275114 28755091 28758511 NC_060943.1 CM039052.1 97.34 True relocation, inconsistency = -92405 29182710 29183639 28758512 28759441 NC_060943.1 CM039052.1 97.37 True relocation, inconsistency = 51333 29235452 29237158 28759921 28761626 NC_060943.1 CM039052.1 97.7 True relocation, inconsistency = -147538 29089621 29094194 28761627 28766203 NC_060943.1 CM039052.1 96.33 True relocation, inconsistency = 129535 29223741 29225141 28766215 28767615 NC_060943.1 CM039052.1 98.07 True local misassembly 29227670 29229774 28770145 28772249 NC_060943.1 CM039052.1 97.15 True relocation, inconsistency = 33601 29265318 29266337 28774192 28775211 NC_060943.1 CM039052.1 97.9 True relocation, inconsistency = -2926022 26340316 26344189 28775212 28779086 NC_060943.1 CM039052.1 96.59 True relocation, inconsistency = 2897847 29242578 29244351 28779628 28781400 NC_060943.1 CM039052.1 97.68 True relocation, inconsistency = -2521155 26723197 26727460 28781401 28785661 NC_060943.1 CM039052.1 96.79 True relocation, inconsistency = 2496020 29223741 29225141 28785922 28787322 NC_060943.1 CM039052.1 98.0 True local misassembly 29223104 29223932 28787323 28788150 NC_060943.1 CM039052.1 97.57 True local misassembly 29227670 29229777 28789852 28791959 NC_060943.1 CM039052.1 98.01 True local misassembly 29230728 29232977 28792572 28794820 NC_060943.1 CM039052.1 96.71 True local misassembly 29230728 29231821 28795290 28796383 NC_060943.1 CM039052.1 96.89 True local misassembly 29231822 29232413 28796724 28797315 NC_060943.1 CM039052.1 97.3 True indel: indel (<= 5bp) 29232415 29233093 28797316 28797994 NC_060943.1 CM039052.1 97.2 True local misassembly 29235281 29237790 28800182 28802691 NC_060943.1 CM039052.1 97.17 True indel: indel (<= 5bp) 29237791 29238838 28802696 28803743 NC_060943.1 CM039052.1 98.0 True local misassembly 29241089 29241780 28806676 28807367 NC_060943.1 CM039052.1 97.54 True local misassembly 29242407 29243879 28807994 28809466 NC_060943.1 CM039052.1 97.49 True local misassembly 29246704 29247307 28812636 28813239 NC_060943.1 CM039052.1 98.18 True local misassembly 29245632 29247307 28814276 28815942 NC_060943.1 CM039052.1 97.26 True local misassembly 29250402 29252194 28815986 28817778 NC_060943.1 CM039052.1 98.27 True local misassembly 29252534 29253751 28817779 28818996 NC_060943.1 CM039052.1 97.87 True local misassembly 29254449 29257267 28819700 28822514 NC_060943.1 CM039052.1 96.88 True relocation, inconsistency = -269530 28987816 28991219 28822593 28825998 NC_060943.1 CM039052.1 98.21 True relocation, inconsistency = 240678 29231898 29232828 28825999 28826928 NC_060943.1 CM039052.1 98.48 True fake: not a misassembly (possible transposable element) 29039748 29044392 28826929 28831572 NC_060943.1 CM039052.1 96.88 True fake: not a misassembly (possible transposable element) 29239159 29240178 28831573 28832592 NC_060943.1 CM039052.1 98.58 True relocation, inconsistency = -85664 29155093 29159329 28833171 28837407 NC_060943.1 CM039052.1 97.07 True local misassembly 29159670 29160463 28837408 28838201 NC_060943.1 CM039052.1 96.85 True indel: indel (<= 5bp) 29160464 29162170 28838203 28839909 NC_060943.1 CM039052.1 97.21 True local misassembly 29163871 29168852 28839910 28844892 NC_060943.1 CM039052.1 97.81 True local misassembly 29172932 29176112 28845572 28848752 NC_060943.1 CM039052.1 98.71 True local misassembly 29176113 29178672 28849093 28851652 NC_060943.1 CM039052.1 96.6 True local misassembly 29179013 29182290 28851653 28854930 NC_060943.1 CM039052.1 97.04 True indel: indel (<= 5bp) 29182293 29185626 28854931 28858264 NC_060943.1 CM039052.1 96.7 True relocation, inconsistency = -14282 29171572 29177566 28858492 28864488 NC_060943.1 CM039052.1 97.08 True local misassembly 29176547 29180668 28864489 28868610 NC_060943.1 CM039052.1 97.43 True relocation, inconsistency = 9860 29190529 29192714 28868611 28870796 NC_060943.1 CM039052.1 96.84 True local misassembly 29186595 29189364 28870797 28873566 NC_060943.1 CM039052.1 96.93 True indel: indel (<= 5bp) 29189365 29190016 28873568 28874219 NC_060943.1 CM039052.1 97.55 True local misassembly 29190357 29191123 28874220 28874986 NC_060943.1 CM039052.1 96.84 True local misassembly 29186364 29189216 28874987 28877839 NC_060943.1 CM039052.1 98.93 True relocation, inconsistency = -34004 29155213 29160989 28877840 28883615 NC_060943.1 CM039052.1 97.2 True relocation, inconsistency = 20403 29181547 29183303 28883770 28885526 NC_060943.1 CM039052.1 98.73 True relocation, inconsistency = -3146498 26036806 26041014 28885527 28889735 NC_060943.1 CM039052.1 96.77 True relocation, inconsistency = 3135956 29177248 29179659 28890013 28892424 NC_060943.1 CM039052.1 95.94 True indel: indel (<= 5bp) 29179664 29182854 28892425 28895615 NC_060943.1 CM039052.1 97.64 True relocation, inconsistency = -19043 29163812 29170853 28895616 28902655 NC_060943.1 CM039052.1 97.46 True relocation, inconsistency = -17684 29153392 29157731 28902878 28907216 NC_060943.1 CM039052.1 97.58 True relocation, inconsistency = -69006 29088841 29100797 28907332 28919354 NC_060943.1 CM039052.1 95.87 True local misassembly 29101818 29105206 28919355 28922771 NC_060943.1 CM039052.1 95.5 True relocation, inconsistency = -16337 29090085 29095023 28923987 28928928 NC_060943.1 CM039052.1 96.26 True local misassembly 29089136 29095037 28929183 28935116 NC_060943.1 CM039052.1 95.74 True local misassembly 29090284 29094676 28935117 28939513 NC_060943.1 CM039052.1 96.2 True fake: not a misassembly (possible transposable element) 29446237 29452439 28940128 28946329 NC_060943.1 CM039052.1 96.55 True fake: not a misassembly (possible transposable element) 29095443 29102853 28946399 28953898 NC_060943.1 CM039052.1 95.37 True relocation, inconsistency = 429805 29532744 29533751 28953984 28954990 NC_060943.1 CM039052.1 96.35 True relocation, inconsistency = -442717 29091035 29099599 28954991 28963560 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -449776 28649824 28650807 28963561 28964544 NC_060943.1 CM039052.1 97.45 True indel: indel (<= 5bp) 28650809 28653291 28964545 28967027 NC_060943.1 CM039052.1 96.9 True relocation, inconsistency = 315506 28968798 28974364 28967028 28972590 NC_060943.1 CM039052.1 96.36 True relocation, inconsistency = -2920086 26054279 26056769 28972591 28975080 NC_060943.1 CM039052.1 97.5 True relocation, inconsistency = 2613762 28670532 28675698 28975081 28980247 NC_060943.1 CM039052.1 97.16 True fake: not a misassembly (possible transposable element) 29094204 29095268 28980625 28981689 NC_060943.1 CM039052.1 96.25 True fake: not a misassembly (possible transposable element) 28670313 28677009 28981690 28988386 NC_060943.1 CM039052.1 96.81 True relocation, inconsistency = 351859 29029255 29032139 28988773 28991660 NC_060943.1 CM039052.1 96.33 True relocation, inconsistency = 60154 29092663 29097186 28992030 28996553 NC_060943.1 CM039052.1 96.55 True relocation, inconsistency = -469160 28628091 28630346 28996618 28998868 NC_060943.1 CM039052.1 96.1 True relocation, inconsistency = 239694 28870342 28873814 28999170 29002641 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = -161831 28712059 28715710 29002717 29006367 NC_060943.1 CM039052.1 96.85 True relocation, inconsistency = 191410 28907404 28910031 29006651 29009278 NC_060943.1 CM039052.1 97.54 True relocation, inconsistency = 305961 29215993 29221825 29009279 29015111 NC_060943.1 CM039052.1 96.43 True relocation, inconsistency = -58145 29163978 29168782 29015409 29020213 NC_060943.1 CM039052.1 97.02 True relocation, inconsistency = -165198 29003585 29007012 29020214 29023642 NC_060943.1 CM039052.1 96.54 True indel: indel (<= 5bp) 29007266 29012114 29023895 29028743 NC_060943.1 CM039052.1 97.28 True relocation, inconsistency = -105064 28907311 28910462 29029004 29032155 NC_060943.1 CM039052.1 97.5 True relocation, inconsistency = -16999 28893464 28900357 29032156 29039049 NC_060943.1 CM039052.1 96.85 True relocation, inconsistency = 96557 28996951 29003952 29039086 29046086 NC_060943.1 CM039052.1 97.49 True relocation, inconsistency = -23807 28980333 28982526 29046274 29048467 NC_060943.1 CM039052.1 97.4 True relocation, inconsistency = 466518 29449045 29450202 29048468 29049625 NC_060943.1 CM039052.1 96.41 True indel: indel (<= 5bp) 29450204 29451975 29049626 29051397 NC_060943.1 CM039052.1 96.9 True translocation 122002124 122003950 29051875 29053700 NC_060925.1 CM039052.1 96.22 True relocation, inconsistency = 168686 122173568 122175040 29054632 29056103 NC_060925.1 CM039052.1 96.74 True translocation 29007238 29008396 29057190 29058348 NC_060943.1 CM039052.1 97.56 True relocation, inconsistency = -114920 28893477 28899335 29058349 29064207 NC_060943.1 CM039052.1 96.97 True relocation, inconsistency = 97577 28996913 29003952 29064208 29071246 NC_060943.1 CM039052.1 97.47 True relocation, inconsistency = -2838116 26165837 26169941 29071247 29075351 NC_060943.1 CM039052.1 97.56 True relocation, inconsistency = 3300864 29470806 29473778 29075352 29078323 NC_060943.1 CM039052.1 96.28 True relocation, inconsistency = -384918 29088861 29097758 29078324 29087226 NC_060943.1 CM039052.1 96.07 True relocation, inconsistency = 242679 29340917 29349443 29087706 29096232 NC_060943.1 CM039052.1 95.94 True relocation, inconsistency = -75480 29274071 29275652 29096340 29097921 NC_060943.1 CM039052.1 96.65 True local misassembly 29279808 29285032 29102072 29107296 NC_060943.1 CM039052.1 95.87 True indel: stretch of mismatches 29285229 29287025 29107493 29109289 NC_060943.1 CM039052.1 96.05 True local misassembly 29287974 29288750 29110571 29111347 NC_060943.1 CM039052.1 95.5 True fake: not a misassembly (possible transposable element) 29272256 29275673 29113206 29116623 NC_060943.1 CM039052.1 95.82 True fake: not a misassembly (possible transposable element) 29294320 29296556 29116910 29119146 NC_060943.1 CM039052.1 97.09 True local misassembly 29296557 29297516 29119487 29120446 NC_060943.1 CM039052.1 96.88 True local misassembly 29297517 29299296 29120783 29122562 NC_060943.1 CM039052.1 95.51 True relocation, inconsistency = -18356 29281994 29283289 29123616 29124912 NC_060943.1 CM039052.1 97.38 True local misassembly 29284650 29286951 29126609 29128910 NC_060943.1 CM039052.1 97.7 True local misassembly 29286952 29288385 29129251 29130684 NC_060943.1 CM039052.1 96.58 True local misassembly 29288742 29290440 29131377 29133075 NC_060943.1 CM039052.1 95.53 True relocation, inconsistency = 56782 29348211 29349585 29134064 29135438 NC_060943.1 CM039052.1 96.65 True indel: indel (<= 5bp) 29349590 29351364 29135439 29137213 NC_060943.1 CM039052.1 97.58 True local misassembly 29351705 29352354 29137214 29137863 NC_060943.1 CM039052.1 97.82 True local misassembly 29352015 29353795 29137864 29139644 NC_060943.1 CM039052.1 96.86 True local misassembly 29354136 29355005 29139645 29140514 NC_060943.1 CM039052.1 98.51 True indel: stretch of mismatches 29355105 29358082 29140614 29143591 NC_060943.1 CM039052.1 97.45 True local misassembly 29363811 29365342 29143888 29145419 NC_060943.1 CM039052.1 99.15 True local misassembly 29365343 29366740 29145760 29147157 NC_060943.1 CM039052.1 98.43 True local misassembly 29366741 29367556 29147838 29148653 NC_060943.1 CM039052.1 98.16 True local misassembly 29367557 29369481 29148994 29150918 NC_060943.1 CM039052.1 96.26 True local misassembly 29369482 29370105 29151259 29151882 NC_060943.1 CM039052.1 97.28 True local misassembly 29370106 29370966 29152223 29153083 NC_060943.1 CM039052.1 98.61 True local misassembly 29370967 29371677 29153422 29154132 NC_060943.1 CM039052.1 98.45 True local misassembly 29373535 29380035 29155990 29162494 NC_060943.1 CM039052.1 97.0 True local misassembly 29380751 29381825 29162870 29163944 NC_060943.1 CM039052.1 96.93 True indel: indel (<= 5bp) 29381826 29382503 29163947 29164624 NC_060943.1 CM039052.1 97.49 True indel: indel (<= 5bp) 29382506 29383293 29164625 29165412 NC_060943.1 CM039052.1 97.34 True local misassembly 29383632 29385979 29165413 29167760 NC_060943.1 CM039052.1 97.66 True relocation, inconsistency = -8492 29377488 29378089 29167761 29168362 NC_060943.1 CM039052.1 96.77 True indel: indel (<= 5bp) 29378090 29379232 29168365 29169507 NC_060943.1 CM039052.1 98.43 True relocation, inconsistency = -15636 29363859 29366598 29169770 29172509 NC_060943.1 CM039052.1 98.8 True local misassembly 29361159 29363517 29172510 29174866 NC_060943.1 CM039052.1 97.25 True relocation, inconsistency = -11886 29351869 29353623 29175104 29176858 NC_060943.1 CM039052.1 96.01 True indel: indel (<= 5bp) 29353666 29355285 29176903 29178522 NC_060943.1 CM039052.1 95.31 True indel: indel (<= 5bp) 29355288 29357540 29178523 29180775 NC_060943.1 CM039052.1 97.56 True local misassembly 29358083 29360455 29180982 29183354 NC_060943.1 CM039052.1 96.8 True local misassembly 29359628 29363203 29183887 29187464 NC_060943.1 CM039052.1 96.68 True relocation, inconsistency = -90766 29272575 29275673 29187602 29190700 NC_060943.1 CM039052.1 96.97 True local misassembly 29276300 29278481 29191327 29193506 NC_060943.1 CM039052.1 96.69 True relocation, inconsistency = 199700 29478182 29483342 29193507 29198663 NC_060943.1 CM039052.1 96.14 True local misassembly 29485044 29485624 29198664 29199244 NC_060943.1 CM039052.1 95.92 True local misassembly 29483925 29486464 29199245 29201781 NC_060943.1 CM039052.1 96.61 True relocation, inconsistency = 64258 29550723 29556918 29201782 29207977 NC_060943.1 CM039052.1 96.24 True relocation, inconsistency = -180672 29376247 29379181 29207978 29210913 NC_060943.1 CM039052.1 96.17 True relocation, inconsistency = 128998 29508410 29517146 29211144 29219879 NC_060943.1 CM039052.1 96.43 True relocation, inconsistency = -32980 29484167 29487235 29219880 29222948 NC_060943.1 CM039052.1 96.18 True relocation, inconsistency = -8840 29478396 29480894 29222949 29225447 NC_060943.1 CM039052.1 98.04 True local misassembly 29481235 29483494 29225448 29227707 NC_060943.1 CM039052.1 96.19 True relocation, inconsistency = 7823 29491410 29497893 29227800 29234282 NC_060943.1 CM039052.1 96.98 True relocation, inconsistency = 51679 29551493 29556836 29236203 29241546 NC_060943.1 CM039052.1 96.34 True relocation, inconsistency = -79897 29476940 29482868 29241547 29247475 NC_060943.1 CM039052.1 97.0 True relocation, inconsistency = 31282 29515190 29522624 29248515 29255947 NC_060943.1 CM039052.1 96.3 True relocation, inconsistency = -41481 29481144 29486007 29255948 29260809 NC_060943.1 CM039052.1 96.37 True relocation, inconsistency = -7141 29479149 29481295 29261092 29263237 NC_060943.1 CM039052.1 97.11 True relocation, inconsistency = 178109 29660235 29664049 29264068 29267878 NC_060943.1 CM039052.1 97.93 True local misassembly 29664589 29666514 29268757 29270682 NC_060943.1 CM039052.1 98.44 True local misassembly 29666855 29669311 29270683 29273139 NC_060943.1 CM039052.1 97.03 True indel: indel (<= 5bp) 29669313 29670331 29273140 29274158 NC_060943.1 CM039052.1 98.33 True local misassembly 29671351 29672412 29275044 29276105 NC_060943.1 CM039052.1 96.23 True indel: indel (<= 5bp) 29672414 29674069 29276106 29277761 NC_060943.1 CM039052.1 96.56 True indel: stretch of mismatches 29674387 29675429 29278079 29279121 NC_060943.1 CM039052.1 97.51 True local misassembly 29676087 29677109 29279777 29280799 NC_060943.1 CM039052.1 96.97 True local misassembly 29677110 29677809 29281141 29281840 NC_060943.1 CM039052.1 97.14 True local misassembly 29678466 29679461 29282496 29283491 NC_060943.1 CM039052.1 98.59 True local misassembly 29679462 29680188 29283832 29284558 NC_060943.1 CM039052.1 97.11 True fake: not a misassembly (possible transposable element) 29719573 29721426 29289637 29291490 NC_060943.1 CM039052.1 97.2 True fake: not a misassembly (possible transposable element) 29690691 29691315 29291665 29292289 NC_060943.1 CM039052.1 98.24 True relocation, inconsistency = 34649 29726072 29726643 29292397 29292968 NC_060943.1 CM039052.1 95.1 True indel: indel (<= 5bp) 29726645 29729612 29292969 29295936 NC_060943.1 CM039052.1 96.93 True local misassembly 29729953 29733931 29295937 29299915 NC_060943.1 CM039052.1 96.03 True fake: not a misassembly (possible transposable element) 29757604 29758845 29303802 29305045 NC_060943.1 CM039052.1 97.51 True fake: not a misassembly (possible transposable element) 29746437 29748217 29305954 29307734 NC_060943.1 CM039052.1 99.27 True local misassembly 29741874 29744375 29307927 29310429 NC_060943.1 CM039052.1 96.93 True local misassembly 29745001 29748217 29311056 29314268 NC_060943.1 CM039052.1 99.04 True local misassembly 29741344 29744375 29314269 29317303 NC_060943.1 CM039052.1 97.0 True local misassembly 29745026 29748839 29317955 29321768 NC_060943.1 CM039052.1 99.32 True relocation, inconsistency = 8163 29757739 29842424 29322505 29407361 NC_060943.1 CM039052.1 98.09 True local misassembly 29843114 30242596 29407362 29807056 NC_060943.1 CM039052.1 99.75 True relocation, inconsistency = 9257 30251854 31997755 29807057 31552672 NC_060943.1 CM039052.1 99.82 True indel: indel (> 5bp) 31997926 32038992 31552826 31594017 NC_060943.1 CM039052.1 99.02 True local misassembly 32039732 33317132 31596966 32874610 NC_060943.1 CM039052.1 99.71 True local misassembly 33316953 36278064 32876706 35839740 NC_060943.1 CM039052.1 99.73 True indel: indel (> 5bp) 36278211 36346243 35839934 35907962 NC_060943.1 CM039052.1 99.94 True indel: indel (> 5bp) 36346315 38918770 35908007 38475716 NC_060943.1 CM039052.1 99.51 True relocation, scaffold gap is present, inconsistency = -18666 38903754 39943977 38479366 39513103 NC_060943.1 CM039052.1 98.91 True relocation, inconsistency = 73296 40017274 41539796 39513104 41036474 NC_060943.1 CM039052.1 99.7 True indel: indel (> 5bp) 41539929 41793551 41036577 41290267 NC_060943.1 CM039052.1 99.7 True indel: indel (> 5bp) 41793629 42253212 41290319 41749864 NC_060943.1 CM039052.1 99.64 True indel: indel (> 5bp) 42253339 42715322 41750039 42212460 NC_060943.1 CM039052.1 99.59 True local misassembly 42715895 43788249 42213030 43285281 NC_060943.1 CM039052.1 99.86 True local misassembly 43788418 44623070 43285351 44120299 NC_060943.1 CM039052.1 99.75 True local misassembly 44623246 48869563 44120362 48363441 NC_060943.1 CM039052.1 99.7 True indel: indel (> 5bp) 48869600 50245952 48363467 49743330 NC_060943.1 CM039052.1 99.49 True local misassembly 50247569 50739696 49744604 50236682 NC_060943.1 CM039052.1 99.7 True indel: indel (> 5bp) 50739755 50750385 50236732 50247373 NC_060943.1 CM039052.1 98.16 True relocation, inconsistency = 139488 50889985 50894240 50247485 50251747 NC_060943.1 CM039052.1 98.48 True relocation, inconsistency = -139507 50754734 50770761 50251748 50267786 NC_060943.1 CM039052.1 98.78 True fake: not a misassembly (possible transposable element) 50910317 50915717 50267787 50273165 NC_060943.1 CM039052.1 98.16 True fake: not a misassembly (possible transposable element) 50776232 50777188 50273264 50274216 NC_060943.1 CM039052.1 98.33 True relocation, inconsistency = 139594 50916868 50921110 50274302 50278509 NC_060943.1 CM039052.1 97.13 True indel: stretch of mismatches 50921157 50922160 50278556 50279559 NC_060943.1 CM039052.1 97.82 True fake: not a misassembly (possible transposable element) 50782665 50787945 50279645 50284911 NC_060943.1 CM039052.1 97.17 True fake: not a misassembly (possible transposable element) 50927646 50931882 50284997 50289213 NC_060943.1 CM039052.1 97.45 True fake: not a misassembly (possible transposable element) 50792310 50793314 50289260 50290263 NC_060943.1 CM039052.1 97.52 True fake: not a misassembly (possible transposable element) 50933036 50937273 50290347 50294567 NC_060943.1 CM039052.1 97.43 True fake: not a misassembly (possible transposable element) 50797632 50798672 50294568 50295607 NC_060943.1 CM039052.1 97.06 True fake: not a misassembly (possible transposable element) 50938424 50943718 50295702 50300971 NC_060943.1 CM039052.1 97.15 True indel: indel (> 5bp) 50943830 52161577 50301068 51517933 NC_060943.1 CM039052.1 99.51 True local misassembly 52162087 52460525 51518597 51815716 NC_060943.1 CM039052.1 99.22 True local misassembly 52461046 52701931 51816045 52056525 NC_060943.1 CM039052.1 99.44 True local misassembly 52702263 53115445 52057231 52470457 NC_060943.1 CM039052.1 99.79 True relocation, inconsistency = -10692 53104754 53126895 52470458 52492598 NC_060943.1 CM039052.1 99.85 True local misassembly 53129179 53199571 52492599 52563031 NC_060943.1 CM039052.1 99.46 True relocation, inconsistency = 2250918 50830997 50878260 52610334 52563032 NC_060943.1 CM039052.1 97.81 True local misassembly 50819201 50825646 52616752 52610335 NC_060943.1 CM039052.1 96.95 True relocation, inconsistency = 2373987 53199634 53693540 52616753 53105818 NC_060943.1 CM039052.1 98.77 True local misassembly 53695430 54134979 53105819 53545639 NC_060943.1 CM039052.1 99.4 True indel: indel (> 5bp) 54135076 55771822 53545711 55186179 NC_060943.1 CM039052.1 99.53 True indel: stretch of mismatches 55771978 55799094 55186335 55213399 NC_060943.1 CM039052.1 99.35 True indel: indel (<= 5bp) 55799261 57212461 55213567 56631150 NC_060943.1 CM039052.1 99.2 True local misassembly 57213979 57249056 56631683 56666748 NC_060943.1 CM039052.1 99.49 True indel: indel (> 5bp) 57249262 57325092 56666963 56742693 NC_060943.1 CM039052.1 99.21 True local misassembly 57327118 57439639 56742694 56854500 NC_060943.1 CM039052.1 99.05 True local misassembly 57440448 57497383 56854735 56911464 NC_060943.1 CM039052.1 97.56 True indel: indel (<= 5bp) 57497547 57500141 56911623 56914218 NC_060943.1 CM039052.1 99.92 True local misassembly 57501446 57841423 56915344 57255833 NC_060943.1 CM039052.1 99.47 True local misassembly 57842883 57843732 57257294 57258143 NC_060943.1 CM039052.1 96.59 True indel: indel (<= 5bp) 57843735 57845631 57258144 57260040 NC_060943.1 CM039052.1 95.1 True local misassembly 57848423 57856998 57263068 57271583 NC_060943.1 CM039052.1 95.18 True local misassembly 57858741 57924333 57271600 57337560 NC_060943.1 CM039052.1 98.56 True relocation, inconsistency = -28370 57919591 57921345 57361188 57362942 NC_060943.1 CM039052.1 96.13 True local misassembly 57921945 57923089 57363523 57364667 NC_060943.1 CM039052.1 95.2 True local misassembly 57935311 58457231 57375509 57897032 NC_060943.1 CM039052.1 99.06 True local misassembly 58457354 58629535 57897261 58069307 NC_060943.1 CM039052.1 99.64 True indel: indel (> 5bp) 58629640 58659685 58069446 58099458 NC_060943.1 CM039052.1 99.46 True indel: indel (> 5bp) 58659824 58809806 58099527 58249563 NC_060943.1 CM039052.1 99.74 True local misassembly 58811526 60268412 58251221 59710499 NC_060943.1 CM039052.1 99.35 True local misassembly 60268568 60415687 59710569 59857702 NC_060943.1 CM039052.1 99.58 True indel: indel (> 5bp) 60415973 61704428 59858052 61145990 NC_060943.1 CM039052.1 99.61 True relocation, inconsistency = -10307 61705618 61707364 61157487 61159269 NC_060943.1 CM039052.1 96.93 True translocation 229 1129 61160173 61159270 NC_060933.1 CM039052.1 97.28 True CONTIG CM039052.1 61160173 misassembled 2582 451379 10727 458961 NC_060944.1 CM039053.1 99.63 True local misassembly 451540 685643 458999 692996 NC_060944.1 CM039053.1 99.77 True indel: indel (> 5bp) 685611 863605 692997 871286 NC_060944.1 CM039053.1 99.32 True local misassembly 865498 1893615 871672 1898182 NC_060944.1 CM039053.1 99.57 True local misassembly 1900575 2838785 1900371 2833861 NC_060944.1 CM039053.1 99.21 True indel: indel (> 5bp) 2838893 8703953 2834001 8685624 NC_060944.1 CM039053.1 99.53 True local misassembly 8704616 13109545 8686047 13091826 NC_060944.1 CM039053.1 99.78 True local misassembly 13109293 14911318 13092722 14894933 NC_060944.1 CM039053.1 99.77 True local misassembly 14912260 15781258 14896230 15765067 NC_060944.1 CM039053.1 99.73 True local misassembly 15781551 19976314 15766184 19960538 NC_060944.1 CM039053.1 99.75 True local misassembly 19978419 25608950 19960678 25590787 NC_060944.1 CM039053.1 99.78 True relocation, inconsistency = -8375 25609131 25860009 25599343 25851101 NC_060944.1 CM039053.1 98.97 True relocation, inconsistency = -11018 25848992 26065395 26067703 25851102 NC_060944.1 CM039053.1 99.29 True relocation, inconsistency = -50920 26014479 26064994 26067707 26118249 NC_060944.1 CM039053.1 99.59 True fake: scaffold gap size wrong estimation (extensive) 26057919 26283718 26118278 26343639 NC_060944.1 CM039053.1 99.42 True local misassembly 26284913 26314940 26343640 26373666 NC_060944.1 CM039053.1 99.85 True local misassembly 26322431 26388787 26379438 26446134 NC_060944.1 CM039053.1 99.21 True relocation, inconsistency = 8843 26400942 26405669 26449446 26454172 NC_060944.1 CM039053.1 97.76 True relocation, inconsistency = 309281 26716793 26866308 26456015 26605694 NC_060944.1 CM039053.1 96.88 True relocation, inconsistency = -7479 26858830 26869027 26605695 26615894 NC_060944.1 CM039053.1 97.03 True relocation, inconsistency = -21078 26847951 26849768 26615896 26617713 NC_060944.1 CM039053.1 98.57 True indel: indel (<= 5bp) 26849769 26868509 26617715 26636455 NC_060944.1 CM039053.1 98.58 True indel: indel (<= 5bp) 26868510 26871145 26636457 26639092 NC_060944.1 CM039053.1 98.48 True indel: indel (<= 5bp) 26871146 26872587 26639094 26640535 NC_060944.1 CM039053.1 97.71 True indel: indel (<= 5bp) 26872588 26874422 26640537 26642371 NC_060944.1 CM039053.1 98.37 True indel: indel (<= 5bp) 26874423 26875305 26642373 26643255 NC_060944.1 CM039053.1 98.19 True indel: indel (<= 5bp) 26875306 26876664 26643257 26644615 NC_060944.1 CM039053.1 97.79 True indel: indel (<= 5bp) 26876665 26877455 26644617 26645407 NC_060944.1 CM039053.1 97.98 True relocation, inconsistency = -58465 26818991 26820733 26645408 26647150 NC_060944.1 CM039053.1 98.8 True relocation, inconsistency = -53708 26767075 26768187 26647200 26648312 NC_060944.1 CM039053.1 98.47 True indel: indel (<= 5bp) 26768188 26769546 26648314 26649672 NC_060944.1 CM039053.1 98.75 True indel: indel (<= 5bp) 26769547 26773143 26649674 26653270 NC_060944.1 CM039053.1 98.55 True relocation, inconsistency = 8839 26782032 26793588 26653320 26664878 NC_060944.1 CM039053.1 98.08 True relocation, inconsistency = -21076 26772513 26809264 26664879 26701637 NC_060944.1 CM039053.1 98.43 True local misassembly 26807225 26880432 26701638 26774837 NC_060944.1 CM039053.1 98.18 True relocation, inconsistency = -109470 26771183 26776345 26775058 26780220 NC_060944.1 CM039053.1 98.3 True indel: stretch of mismatches 26776840 26778582 26780715 26782457 NC_060944.1 CM039053.1 98.85 True local misassembly 26778583 26779287 26783138 26783842 NC_060944.1 CM039053.1 98.72 True local misassembly 26782032 26790869 26785907 26794745 NC_060944.1 CM039053.1 97.95 True relocation, inconsistency = 38752 26829622 26866395 26794746 26831524 NC_060944.1 CM039053.1 98.47 True relocation, inconsistency = -128496 26737905 26874178 26831530 26967812 NC_060944.1 CM039053.1 98.18 True relocation, inconsistency = -165884 26708295 26711007 26967813 26970525 NC_060944.1 CM039053.1 97.92 True local misassembly 26704210 26880431 26970526 27147430 NC_060944.1 CM039053.1 97.88 True relocation, inconsistency = 38754 26919186 26924167 27147431 27152412 NC_060944.1 CM039053.1 97.31 True indel: indel (<= 5bp) 26924285 26927990 27152531 27156236 NC_060944.1 CM039053.1 98.08 True local misassembly 26926765 26929348 27156367 27158950 NC_060944.1 CM039053.1 97.83 True local misassembly 26926607 26930892 27160286 27164570 NC_060944.1 CM039053.1 97.57 True relocation, inconsistency = 81397 27012670 27015997 27164951 27168278 NC_060944.1 CM039053.1 97.33 True relocation, inconsistency = -88705 26927311 26929348 27168297 27170334 NC_060944.1 CM039053.1 97.69 True relocation, inconsistency = 29715 26960101 26961472 27171372 27172743 NC_060944.1 CM039053.1 97.89 True indel: stretch of mismatches 26961727 26982098 27172998 27193381 NC_060944.1 CM039053.1 98.87 True relocation, inconsistency = 1199575 28181674 28187152 27193382 27198860 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = 905259 29092412 29099749 27198861 27206198 NC_060944.1 CM039053.1 99.25 True relocation, inconsistency = -32295 29067455 29071204 27206199 27209948 NC_060944.1 CM039053.1 98.94 True relocation, inconsistency = -889620 28181585 28188890 27209949 27217253 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -429579 27759749 27768224 27217691 27226166 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = 328289 28101366 28106709 27231019 27236362 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = -374170 27732986 27738921 27236809 27242742 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = 20389 27759749 27769240 27243181 27252672 NC_060944.1 CM039053.1 99.59 True local misassembly 27766522 27768861 27252673 27255012 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = -340579 27428283 27437764 27255013 27264494 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 976120 28413885 28417344 27264495 27267954 NC_060944.1 CM039053.1 99.77 True local misassembly 28418051 28422440 27268663 27273052 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = -226689 28198241 28203584 27275542 27280885 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = -774921 27428664 27431714 27280886 27283934 NC_060944.1 CM039053.1 99.27 True relocation, inconsistency = -177074 27254641 27258361 27283935 27287655 NC_060944.1 CM039053.1 98.26 True relocation, inconsistency = 158041 27416403 27424169 27287656 27295419 NC_060944.1 CM039053.1 99.45 True relocation, inconsistency = 762002 28186172 28186876 27295420 27296124 NC_060944.1 CM039053.1 99.36 True relocation, inconsistency = -769141 27417736 27422155 27296125 27300543 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = 680082 28102238 28106803 27300544 27305107 NC_060944.1 CM039053.1 99.52 True local misassembly 28101366 28108671 27305108 27312413 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = -448942 27659730 27660580 27312414 27313264 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = 440785 28101366 28108671 27313265 27320570 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = 88718 28198241 28204618 27321422 27327799 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = 563352 28767971 28772033 27327800 27331862 NC_060944.1 CM039053.1 99.5 True relocation, inconsistency = -671103 28101366 28108671 27332298 27339603 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = 74781 28183453 28188890 27339604 27345041 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -534599 27657324 27666941 27348074 27357690 NC_060944.1 CM039053.1 99.47 True relocation, inconsistency = 164144 27831086 27839242 27357691 27365847 NC_060944.1 CM039053.1 99.5 True relocation, inconsistency = 343264 28182507 28184303 27365848 27367644 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -82938 28101366 28108671 27367645 27374950 NC_060944.1 CM039053.1 99.71 True relocation, inconsistency = 74781 28183453 28188890 27374951 27380388 NC_060944.1 CM039053.1 99.7 True relocation, inconsistency = -347346 27841858 27844576 27380702 27383419 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -187253 27657324 27664176 27383420 27390270 NC_060944.1 CM039053.1 99.55 True local misassembly 27659177 27661895 27390709 27393426 NC_060944.1 CM039053.1 99.55 True local misassembly 27659177 27666941 27393427 27401190 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = 1081978 28748920 28752031 27401191 27404302 NC_060944.1 CM039053.1 99.65 True relocation, inconsistency = -1092855 27659177 27666941 27404303 27412065 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = 1101011 28767953 28771930 27412066 27416043 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -1114607 27657324 27662761 27416044 27421479 NC_060944.1 CM039053.1 99.5 True local misassembly 27657324 27662761 27421480 27426917 NC_060944.1 CM039053.1 99.55 True local misassembly 27657324 27666941 27426918 27436534 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = 96861 27763803 27765186 27436535 27437918 NC_060944.1 CM039053.1 99.58 True local misassembly 27759749 27769240 27437919 27447410 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -8157 27761084 27762467 27447411 27448794 NC_060944.1 CM039053.1 99.62 True local misassembly 27759749 27769240 27448795 27458286 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -8157 27761084 27768434 27458287 27465637 NC_060944.1 CM039053.1 99.6 True relocation, scaffold gap is present, inconsistency = 62677 27831320 27836916 27465846 27471441 NC_060944.1 CM039053.1 99.35 True relocation, inconsistency = -177740 27659177 27664614 27471442 27476878 NC_060944.1 CM039053.1 99.58 True local misassembly 27659177 27665481 27476879 27483182 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = -8158 27657324 27665167 27483183 27491026 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = 1097609 28765867 28771064 27494117 27499314 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -1111888 27659177 27666941 27499315 27507078 NC_060944.1 CM039053.1 99.59 True local misassembly 27661503 27664614 27507079 27510190 NC_060944.1 CM039053.1 99.56 True local misassembly 27659177 27664724 27510191 27515737 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = 166522 27831528 27834307 27516019 27518798 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = 348360 28182779 28183588 27518910 27519719 NC_060944.1 CM039053.1 100.0 True local misassembly 28183760 28187022 27519720 27522982 NC_060944.1 CM039053.1 99.71 True local misassembly 28181585 28188447 27522983 27529845 NC_060944.1 CM039053.1 99.75 True relocation, inconsistency = 553155 28747933 28750716 27536176 27538959 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = -649351 28101366 28108671 27538960 27546265 NC_060944.1 CM039053.1 99.66 True relocation, inconsistency = -448942 27659730 27664326 27546266 27550862 NC_060944.1 CM039053.1 99.51 True local misassembly 27661466 27666941 27551063 27556537 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -8158 27659177 27664724 27556931 27562477 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = 166522 27831528 27832686 27562759 27563917 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = -175021 27657666 27665167 27563918 27571761 NC_060944.1 CM039053.1 95.27 True relocation, inconsistency = 518285 28183453 28188447 27571762 27576756 NC_060944.1 CM039053.1 99.74 True relocation, inconsistency = 572188 28766966 28769749 27583087 27585870 NC_060944.1 CM039053.1 99.66 True relocation, inconsistency = -588165 28181585 28188890 27585871 27593176 NC_060944.1 CM039053.1 99.66 True relocation, inconsistency = -529161 27659730 27664326 27593177 27597773 NC_060944.1 CM039053.1 99.51 True local misassembly 27661466 27666941 27597974 27603448 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -8158 27659177 27664724 27603842 27609388 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = 135255 27800119 27801419 27609528 27610828 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = -143754 27657666 27665167 27610829 27618672 NC_060944.1 CM039053.1 95.27 True relocation, inconsistency = 438066 28103234 28108228 27618673 27623667 NC_060944.1 CM039053.1 99.74 True relocation, inconsistency = 652407 28766966 28769749 27629998 27632781 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = -588165 28181585 28188890 27632782 27640087 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = -219559 27969662 27977380 27640418 27648136 NC_060944.1 CM039053.1 99.61 True local misassembly 27971268 27972380 27648142 27649254 NC_060944.1 CM039053.1 99.59 True local misassembly 27966943 27977380 27649255 27659692 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -145457 27831924 27835063 27659693 27662832 NC_060944.1 CM039053.1 99.45 True local misassembly 27829626 27839242 27662833 27672443 NC_060944.1 CM039053.1 99.44 True relocation, inconsistency = -78159 27761084 27765186 27672444 27676546 NC_060944.1 CM039053.1 99.58 True local misassembly 27759749 27769240 27676547 27686038 NC_060944.1 CM039053.1 99.6 True local misassembly 27763803 27768224 27686039 27690460 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = 285466 28053691 28055385 27690461 27692153 NC_060944.1 CM039053.1 99.09 True relocation, inconsistency = -626728 27428658 27431324 27692154 27694818 NC_060944.1 CM039053.1 99.25 True relocation, inconsistency = 749427 28182523 28187022 27696590 27701089 NC_060944.1 CM039053.1 99.65 True relocation, inconsistency = -85657 28101366 28108671 27701090 27708395 NC_060944.1 CM039053.1 99.7 True relocation, inconsistency = -257952 27851049 27858089 27708725 27715764 NC_060944.1 CM039053.1 99.62 True relocation, inconsistency = -810558 27047779 27054193 27716012 27722427 NC_060944.1 CM039053.1 98.56 True relocation, inconsistency = 705555 27759749 27769240 27722428 27731918 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = -113176 27659177 27666941 27735031 27742794 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -287567 27379375 27380852 27742795 27744271 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = 720193 28101366 28108671 27744592 27751897 NC_060944.1 CM039053.1 99.77 True local misassembly 28105953 28106803 27751898 27752748 NC_060944.1 CM039053.1 99.73 True local misassembly 28101366 28108671 27752749 27760054 NC_060944.1 CM039053.1 99.81 True local misassembly 28103234 28106803 27760055 27763624 NC_060944.1 CM039053.1 99.78 True local misassembly 28101366 28106265 27763625 27768524 NC_060944.1 CM039053.1 99.74 True relocation, inconsistency = -689940 27416326 27424169 27768525 27776368 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = 759283 28183453 28186484 27776369 27779400 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = -529161 27657324 27666941 27779401 27789017 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = -8158 27658784 27661895 27789018 27792128 NC_060944.1 CM039053.1 99.53 True local misassembly 27659177 27664614 27792129 27797565 NC_060944.1 CM039053.1 99.58 True local misassembly 27659177 27666941 27797566 27805329 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = -120652 27546290 27548563 27805330 27807603 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = -286551 27262013 27263716 27807604 27809307 NC_060944.1 CM039053.1 98.24 True relocation, inconsistency = 565909 27829626 27837361 27809308 27817043 NC_060944.1 CM039053.1 99.57 True local misassembly 27831057 27832361 27817540 27818844 NC_060944.1 CM039053.1 99.54 True local misassembly 27829643 27839242 27818845 27828444 NC_060944.1 CM039053.1 99.6 True local misassembly 27833805 27837855 27828445 27832495 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -180459 27657397 27666941 27832496 27842039 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = 429908 28101366 28108671 27846556 27853861 NC_060944.1 CM039053.1 99.71 True local misassembly 28103234 28108671 27853862 27859299 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -260671 27848314 27849696 27859613 27860995 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -91409 27758288 27769240 27860996 27871948 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = 413266 28182507 28188277 27871949 27877719 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = -89735 28101366 28108671 27880543 27887848 NC_060944.1 CM039053.1 99.78 True relocation, inconsistency = -451661 27657397 27662836 27888235 27893674 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 158707 27821544 27831103 27893675 27903234 NC_060944.1 CM039053.1 99.65 True local misassembly 27833823 27836916 27903235 27906328 NC_060944.1 CM039053.1 99.5 True relocation, inconsistency = -177740 27659177 27666936 27906329 27914087 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 166863 27833800 27835188 27914088 27915476 NC_060944.1 CM039053.1 99.49 True local misassembly 27829751 27839242 27915477 27924968 NC_060944.1 CM039053.1 99.45 True relocation, inconsistency = 359920 28199163 28203584 27924969 27929390 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = -149894 28053691 28055371 27929391 27931071 NC_060944.1 CM039053.1 98.97 True relocation, inconsistency = -236536 27818836 27820556 27931072 27932792 NC_060944.1 CM039053.1 99.01 True relocation, inconsistency = 282076 28103843 28106709 27934003 27936869 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = -374170 27732986 27736959 27937316 27941268 NC_060944.1 CM039053.1 98.97 True relocation, inconsistency = 316731 28053691 28055371 27941269 27942949 NC_060944.1 CM039053.1 98.92 True relocation, inconsistency = 612987 28668359 28670079 27942950 27944670 NC_060944.1 CM039053.1 99.07 True relocation, inconsistency = -487228 28184062 28186928 27945881 27948747 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = -818388 27373148 27379391 27953355 27959596 NC_060944.1 CM039053.1 99.39 True relocation, inconsistency = 1366826 28746649 28753000 27960028 27966379 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = -920553 27832470 27839242 27966402 27973174 NC_060944.1 CM039053.1 99.34 True relocation, inconsistency = -175021 27664222 27666941 27973175 27975893 NC_060944.1 CM039053.1 99.42 True relocation, inconsistency = -294708 27373716 27380852 27977376 27984507 NC_060944.1 CM039053.1 99.2 True relocation, inconsistency = 47585 27428443 27432862 27984513 27988931 NC_060944.1 CM039053.1 99.28 True relocation, inconsistency = -59147 27373716 27380852 27988932 27996063 NC_060944.1 CM039053.1 99.29 True relocation, inconsistency = 817068 28198241 28204618 27996384 28002761 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -757920 27447392 27450915 28003455 28006977 NC_060944.1 CM039053.1 98.98 True relocation, inconsistency = -7137 27447392 27450881 28010591 28014080 NC_060944.1 CM039053.1 99.01 True relocation, inconsistency = -77166 27373716 27375867 28014081 28016231 NC_060944.1 CM039053.1 99.34 True local misassembly 27373148 27380852 28016232 28023933 NC_060944.1 CM039053.1 99.35 True relocation, inconsistency = 150599 27545498 27549456 28037980 28041938 NC_060944.1 CM039053.1 99.72 True relocation, inconsistency = 186248 27735705 27741640 28041939 28047874 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 1157099 28898740 28902310 28047875 28051444 NC_060944.1 CM039053.1 98.96 True relocation, inconsistency = -720726 28181585 28186707 28051445 28056567 NC_060944.1 CM039053.1 99.5 True relocation, inconsistency = -812992 27373716 27380852 28056568 28063699 NC_060944.1 CM039053.1 99.24 True relocation, inconsistency = -159049 27234633 27243595 28076529 28085490 NC_060944.1 CM039053.1 98.44 True relocation, inconsistency = 299789 27543385 27545910 28085491 28088015 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -117628 27428283 27435615 28088016 28095348 NC_060944.1 CM039053.1 99.28 True relocation, inconsistency = 398004 27833620 27835188 28095349 28096917 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -405143 27430046 27435581 28096918 28102452 NC_060944.1 CM039053.1 99.17 True relocation, inconsistency = -61866 27373716 27380852 28102453 28109586 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = 164194 27545047 27550299 28109587 28114838 NC_060944.1 CM039053.1 99.3 True relocation, inconsistency = -377610 27187742 27193963 28129891 28136118 NC_060944.1 CM039053.1 98.84 True relocation, inconsistency = 907442 28102238 28106657 28136951 28141367 NC_060944.1 CM039053.1 99.4 True relocation, inconsistency = 75799 28182457 28186940 28141368 28145848 NC_060944.1 CM039053.1 99.42 True fake: not a misassembly (possible transposable element) 27657324 27664239 28147092 28154007 NC_060944.1 CM039053.1 99.62 True fake: not a misassembly (possible transposable element) 28201900 28204618 28154008 28156725 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = -375215 27831036 27837941 28158358 28165261 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = -102630 27735312 27741640 28165262 28171590 NC_060944.1 CM039053.1 99.35 True relocation, inconsistency = 90391 27832032 27835138 28171591 28174697 NC_060944.1 CM039053.1 99.41 True relocation, inconsistency = -71365 27763774 27764924 28174698 28175848 NC_060944.1 CM039053.1 99.43 True relocation, inconsistency = -77148 27687777 27693795 28175849 28181865 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 1402129 29095925 29099479 28181866 28185418 NC_060944.1 CM039053.1 99.22 True relocation, inconsistency = -1671680 27428612 27435045 28186231 28192662 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = 266150 27701196 27704619 28192663 28196085 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 56414 27761034 27767983 28196086 28203033 NC_060944.1 CM039053.1 99.53 True local misassembly 27763902 27769240 28203034 28208372 NC_060944.1 CM039053.1 99.45 True relocation, inconsistency = 428223 28199113 28203678 28210022 28214587 NC_060944.1 CM039053.1 99.65 True local misassembly 28198241 28204618 28214588 28220965 NC_060944.1 CM039053.1 99.42 True relocation, inconsistency = -551932 27658734 27665167 28227013 28233444 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = -8157 27659177 27661950 28235611 28238384 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = 1084698 28746649 28757094 28238385 28248830 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = -1307677 27449418 27453064 28248831 28252477 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = 88390 27541562 27545366 28252585 28256389 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = 555999 28101366 28108671 28256390 28263695 NC_060944.1 CM039053.1 99.77 True local misassembly 28103234 28104084 28263696 28264546 NC_060944.1 CM039053.1 99.69 True local misassembly 28101366 28108671 28264547 28271848 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -586250 27522422 27527751 28271849 28277177 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = 650155 28181585 28183765 28280856 28283036 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -526442 27657324 27665167 28283037 28290876 NC_060944.1 CM039053.1 99.53 True local misassembly 27659766 27665167 28291084 28296485 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = -8157 27657397 27666941 28296872 28306415 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = 435346 28102288 28108671 28306416 28312799 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = 462416 28571088 28576792 28312800 28318504 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = -513734 28063122 28071923 28318568 28327369 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -317076 27754848 27757029 28327370 28329551 NC_060944.1 CM039053.1 99.66 True relocation, inconsistency = 72721 27829751 27837907 28329552 28337708 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -86316 27751592 27761101 28337709 28347218 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = -102300 27658802 27662834 28347219 28351251 NC_060944.1 CM039053.1 99.6 True local misassembly 27657397 27665684 28351252 28359538 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 165500 27831185 27839242 28359539 28367596 NC_060944.1 CM039053.1 99.41 True relocation, inconsistency = 912396 28751639 28752914 28367597 28368872 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -1095574 27657341 27663524 28368873 28375056 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = 62876 27726401 27732985 28375057 28381639 NC_060944.1 CM039053.1 99.56 True local misassembly 27727546 27744048 28381640 28398140 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = -202221 27541904 27549026 28398217 28405338 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -8158 27541299 27547151 28405769 28411620 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 1219286 28766438 28771947 28411621 28417130 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -1012307 27759641 27769240 28417131 28426730 NC_060944.1 CM039053.1 99.56 True local misassembly 27763803 27766969 28426731 28429897 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = 979679 28746649 28753341 28429898 28436590 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -651052 28102290 28106709 28436591 28441008 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = -449625 27658734 27665925 28442658 28449844 NC_060944.1 CM039053.1 99.44 True relocation, inconsistency = 436364 28102290 28104084 28449845 28451637 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = 77500 28181585 28186928 28451638 28456981 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = -355841 27831534 27837819 28457428 28463713 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -180459 27657361 27662761 28463714 28469110 NC_060944.1 CM039053.1 99.49 True local misassembly 27657324 27665167 28469111 28476949 NC_060944.1 CM039053.1 99.48 True relocation, inconsistency = 1431701 29096869 29099479 28476950 28479560 NC_060944.1 CM039053.1 99.23 True relocation, inconsistency = -1442577 27657324 27665167 28479982 28487820 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = 94143 27759624 27767467 28488134 28495977 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = 338485 28105953 28108671 28495978 28498696 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = -489720 27624341 27632546 28504086 28512284 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = 260657 27893204 27894146 28512285 28513227 NC_060944.1 CM039053.1 99.4 True relocation, inconsistency = -64570 27829751 27839242 28513402 28522891 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = 925991 28765682 28772033 28523340 28529682 NC_060944.1 CM039053.1 99.43 True relocation, inconsistency = -1112567 27659948 27666941 28530164 28537154 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 1101011 28767953 28772033 28537155 28541235 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -538881 28233180 28239965 28541263 28548044 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -696378 27543588 27547000 28548045 28551456 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 279700 27826701 27830585 28551457 28555341 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -72382 27759749 27769240 28556887 28566376 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = 335766 28105007 28106265 28566377 28567635 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -448942 27657324 27664239 28567636 28574545 NC_060944.1 CM039053.1 99.47 True relocation, inconsistency = -10876 27653364 27657861 28574546 28579043 NC_060944.1 CM039053.1 99.68 True relocation, inconsistency = 440786 28098648 28106368 28579044 28586763 NC_060944.1 CM039053.1 99.56 True local misassembly 28102238 28106368 28587053 28591181 NC_060944.1 CM039053.1 99.59 True local misassembly 28101366 28106709 28591617 28596960 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -563138 27543572 27546761 28596961 28600149 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 212413 27759749 27768101 28600724 28609075 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = -533960 27238092 27244000 28613026 28618933 NC_060944.1 CM039053.1 98.75 True relocation, inconsistency = 1127355 28371356 28373515 28618934 28621093 NC_060944.1 CM039053.1 99.41 True relocation, inconsistency = -715071 27658638 27665167 28621287 28627816 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = 1081979 28747998 28750716 28628668 28631386 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = -569132 28181585 28188890 28631387 28638691 NC_060944.1 CM039053.1 99.78 True relocation, inconsistency = -1197887 26996618 26997275 28644306 28644963 NC_060944.1 CM039053.1 98.18 True relocation, inconsistency = 1101355 28098648 28106368 28644981 28652701 NC_060944.1 CM039053.1 99.65 True relocation, inconsistency = 74781 28181585 28188890 28653137 28660441 NC_060944.1 CM039053.1 99.78 True relocation, inconsistency = -88376 28101366 28108671 28661293 28668597 NC_060944.1 CM039053.1 99.73 True relocation, inconsistency = 47249 28155921 28159175 28668598 28671852 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = -770501 27388675 27395022 28671853 28678198 NC_060944.1 CM039053.1 98.96 True relocation, inconsistency = 187306 27584877 27589795 28680747 28685662 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 610049 28200068 28203584 28685886 28689402 NC_060944.1 CM039053.1 99.6 True local misassembly 28200068 28203584 28689626 28693142 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = 170612 28374889 28379294 28693835 28698240 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = 16654 28396641 28401046 28698933 28703336 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = -298757 28102290 28105055 28703337 28706099 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = 77162 28182218 28186876 28706100 28710758 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = -648795 27538082 27543587 28710759 28716264 NC_060944.1 CM039053.1 99.47 True relocation, inconsistency = 638937 28182525 28186876 28716265 28720616 NC_060944.1 CM039053.1 99.53 True local misassembly 28182457 28186928 28720617 28725088 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -391526 27807689 27809628 28737375 28739314 NC_060944.1 CM039053.1 99.3 True relocation, inconsistency = 292609 28102238 28106368 28739315 28743422 NC_060944.1 CM039053.1 99.03 True relocation, inconsistency = -735491 27373148 27378171 28745693 28750691 NC_060944.1 CM039053.1 98.93 True relocation, inconsistency = 781041 28181585 28189380 28773064 28780859 NC_060944.1 CM039053.1 99.6 True local misassembly 28183943 28188886 28780860 28785803 NC_060944.1 CM039053.1 99.62 True relocation, inconsistency = -530861 27658734 27665167 28786512 28792942 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = 521004 28186172 28186928 28792943 28793698 NC_060944.1 CM039053.1 99.42 True relocation, inconsistency = 886228 29092359 29097181 28812901 28817723 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = -1439858 27657324 27665167 28817724 28825568 NC_060944.1 CM039053.1 99.62 True local misassembly 27659730 27662761 28825569 28828600 NC_060944.1 CM039053.1 99.6 True local misassembly 27657324 27662761 28828601 28834037 NC_060944.1 CM039053.1 99.55 True local misassembly 27657324 27666941 28834038 28843654 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 518284 28185226 28187022 28843655 28845451 NC_060944.1 CM039053.1 99.66 True local misassembly 28181585 28188890 28845452 28852757 NC_060944.1 CM039053.1 99.7 True local misassembly 28183453 28188890 28852758 28858195 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -295687 27893204 27896679 28858196 28861670 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 465116 28367769 28371085 28867644 28870958 NC_060944.1 CM039053.1 99.2 True relocation, inconsistency = -481597 27889489 27896679 28870959 28878148 NC_060944.1 CM039053.1 99.21 True relocation, inconsistency = 205610 28102290 28103671 28878149 28879528 NC_060944.1 CM039053.1 99.47 True relocation, inconsistency = -215468 27888204 27896679 28879529 28888004 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 470038 28367769 28371085 28889056 28892372 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = -188629 28182457 28186876 28892373 28896792 NC_060944.1 CM039053.1 99.31 True relocation, inconsistency = -84639 28102238 28103671 28896793 28898224 NC_060944.1 CM039053.1 99.58 True relocation, inconsistency = -273921 27829751 27836739 28898225 28905213 NC_060944.1 CM039053.1 99.54 True relocation, inconsistency = 527815 28367769 28371085 28908428 28911744 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = -171973 28199113 28203584 28911745 28916216 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = 558932 28765682 28770887 28919382 28924587 NC_060944.1 CM039053.1 99.75 True relocation, inconsistency = 300778 29071666 29076278 28924588 28929202 NC_060944.1 CM039053.1 99.18 True relocation, inconsistency = -1418778 27657501 27661718 28929203 28933420 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = 93467 27759624 27766539 28937859 28944774 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = 985117 28751657 28752897 28944775 28946015 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -1325696 27427202 27431596 28946016 28950410 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = 390872 27829751 27835188 28957693 28963130 NC_060944.1 CM039053.1 99.5 True local misassembly 27829751 27835063 28963131 28968443 NC_060944.1 CM039053.1 99.56 True local misassembly 27829626 27839242 28968444 28978060 NC_060944.1 CM039053.1 99.54 True local misassembly 27833805 27836971 28978061 28981227 NC_060944.1 CM039053.1 99.33 True relocation, inconsistency = 928710 28765682 28772033 28981228 28987576 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = -915460 27856574 27861595 28987577 28992598 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = -32283 27829626 27832344 28992912 28995630 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -410581 27421764 27429607 28995631 29003468 NC_060944.1 CM039053.1 99.5 True relocation, inconsistency = 458158 27887766 27894146 29003469 29009849 NC_060944.1 CM039053.1 99.4 True relocation, inconsistency = -64570 27829751 27839242 29010024 29019513 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = -78159 27761532 27765186 29019962 29023612 NC_060944.1 CM039053.1 99.48 True local misassembly 27759749 27765186 29023613 29029048 NC_060944.1 CM039053.1 99.59 True local misassembly 27759749 27769240 29029049 29038540 NC_060944.1 CM039053.1 99.62 True local misassembly 27766522 27769240 29038541 29041259 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = 462551 28233180 28237676 29042648 29047138 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = -504691 27732986 27740712 29047139 29054865 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = 356156 28098648 28101364 29056645 29059362 NC_060944.1 CM039053.1 99.59 True local misassembly 28098647 28106368 29059363 29067081 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -738212 27368446 27375412 29067371 29074333 NC_060944.1 CM039053.1 99.14 True relocation, inconsistency = 822508 28198241 28203584 29074654 29079997 NC_060944.1 CM039053.1 99.51 True local misassembly 28199165 28202333 29079998 29083166 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -440460 27761874 27765186 29083167 29086479 NC_060944.1 CM039053.1 99.59 True local misassembly 27759749 27768095 29086480 29094823 NC_060944.1 CM039053.1 99.56 True relocation, inconsistency = -97206 27670897 27674640 29094831 29098574 NC_060944.1 CM039053.1 99.49 True relocation, inconsistency = -20049 27657397 27660115 29101380 29104098 NC_060944.1 CM039053.1 99.63 True local misassembly 27657397 27665167 29104099 29111869 NC_060944.1 CM039053.1 99.67 True relocation, inconsistency = -219241 27448065 27453424 29114008 29119367 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = 747044 28200469 28202989 29119368 29121888 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -384050 27829626 27837361 29132575 29140310 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -315048 27522735 27527818 29140732 29145815 NC_060944.1 CM039053.1 99.69 True local misassembly 27530880 27533598 29145816 29148534 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = 135604 27669557 27674640 29148889 29153972 NC_060944.1 CM039053.1 99.59 True local misassembly 27669557 27674640 29154327 29159410 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -23109 27657324 27660599 29165203 29168478 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = -424862 27235738 27243515 29168479 29176255 NC_060944.1 CM039053.1 98.7 True local misassembly 27238077 27243515 29176256 29181693 NC_060944.1 CM039053.1 98.65 True relocation, inconsistency = 286194 27529925 27531790 29181909 29183772 NC_060944.1 CM039053.1 99.51 True relocation, inconsistency = -296053 27235738 27243515 29183773 29191548 NC_060944.1 CM039053.1 98.64 True relocation, inconsistency = 415003 27658734 27665167 29191764 29198195 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = 475119 28154260 28156233 29212169 29214142 NC_060944.1 CM039053.1 99.7 True relocation, inconsistency = -498910 27657324 27665167 29214143 29221986 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = -47917 27617251 27620674 29221987 29225410 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 432964 28053639 28057245 29225411 29229017 NC_060944.1 CM039053.1 99.61 True relocation, inconsistency = -400343 27657324 27665167 29229439 29237282 NC_060944.1 CM039053.1 99.63 True relocation, inconsistency = 507409 28181122 28186587 29245828 29251293 NC_060944.1 CM039053.1 99.6 True local misassembly 28181585 28188890 29251729 29259034 NC_060944.1 CM039053.1 99.64 True relocation, inconsistency = -68659 28120232 28125434 29259035 29264237 NC_060944.1 CM039053.1 99.59 True local misassembly 28119997 28125171 29264238 29269412 NC_060944.1 CM039053.1 99.57 True relocation, inconsistency = 621477 28746649 28750716 29269413 29273480 NC_060944.1 CM039053.1 99.59 True relocation, inconsistency = -649351 28101366 28108671 29273481 29280782 NC_060944.1 CM039053.1 99.6 True relocation, inconsistency = -460832 27647840 27650921 29280783 29283863 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = 531535 28182457 28186876 29283864 29288282 NC_060944.1 CM039053.1 99.31 True relocation, inconsistency = -84639 28102238 28103671 29288283 29289714 NC_060944.1 CM039053.1 99.42 True relocation, inconsistency = -215468 27888204 27896679 29289715 29298189 NC_060944.1 CM039053.1 99.37 True relocation, inconsistency = 465960 28367769 28371085 29303319 29306635 NC_060944.1 CM039053.1 99.29 True relocation, inconsistency = -188629 28182457 28187459 29306636 29311638 NC_060944.1 CM039053.1 99.46 True relocation, inconsistency = 179789 28367769 28371085 29312159 29315475 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = -188629 28182457 28188890 29315476 29321909 NC_060944.1 CM039053.1 99.53 True relocation, inconsistency = -354140 27834751 27835455 29321910 29322614 NC_060944.1 CM039053.1 99.55 True local misassembly 27831036 27837324 29322615 29328903 NC_060944.1 CM039053.1 99.55 True relocation, inconsistency = -8157 27829751 27839242 29329487 29338978 NC_060944.1 CM039053.1 99.58 True local misassembly 27833805 27837736 29338979 29342910 NC_060944.1 CM039053.1 99.38 True relocation, inconsistency = 1200503 29038240 29040693 29342911 29345364 NC_060944.1 CM039053.1 98.84 True relocation, inconsistency = -860980 28182457 28186876 29348108 29352526 NC_060944.1 CM039053.1 99.31 True relocation, inconsistency = -355841 27831036 27836739 29352527 29358228 NC_060944.1 CM039053.1 99.4 True relocation, inconsistency = -14271 27830241 27839242 29366001 29375002 NC_060944.1 CM039053.1 99.41 True local misassembly 27836524 27837361 29375003 29375840 NC_060944.1 CM039053.1 99.43 True relocation, inconsistency = -410581 27427202 27431596 29376262 29380656 NC_060944.1 CM039053.1 99.52 True relocation, inconsistency = 664793 28101366 28108671 29385633 29392938 NC_060944.1 CM039053.1 99.67 True local misassembly 28103234 28106265 29392939 29395970 NC_060944.1 CM039053.1 99.69 True relocation, inconsistency = -276640 27829626 27839242 29395971 29405587 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = 1125844 28965087 28971158 29405588 29411658 NC_060944.1 CM039053.1 99.0 True relocation, inconsistency = -50978 28920181 28926495 29411659 29417972 NC_060944.1 CM039053.1 99.03 True relocation, inconsistency = 116104 29042600 29052152 29417973 29427524 NC_060944.1 CM039053.1 99.1 True relocation, inconsistency = -1685163 27366990 27371663 29427525 29432197 NC_060944.1 CM039053.1 99.22 True relocation, inconsistency = 515604 27887268 27895925 29432198 29440854 NC_060944.1 CM039053.1 99.19 True relocation, inconsistency = 523400 28419326 28419941 29440855 29441470 NC_060944.1 CM039053.1 99.76 True local misassembly 28416206 28417319 29441471 29442584 NC_060944.1 CM039053.1 99.55 True local misassembly 28417320 28418792 29442927 29444399 NC_060944.1 CM039053.1 99.59 True local misassembly 28419135 28421237 29444400 29446502 NC_060944.1 CM039053.1 99.67 True local misassembly 28421614 28422337 29446711 29447434 NC_060944.1 CM039053.1 97.65 True relocation, inconsistency = -1432053 26991797 26994611 29448947 29451761 NC_060944.1 CM039053.1 97.1 True relocation, inconsistency = 733978 27728590 27740712 29451762 29463714 NC_060944.1 CM039053.1 97.37 True relocation, inconsistency = -690603 27050110 27050759 29463715 29464364 NC_060944.1 CM039053.1 97.91 True relocation, inconsistency = 186892 27237711 27243025 29464424 29469737 NC_060944.1 CM039053.1 98.17 True relocation, inconsistency = -107717 27139164 27140073 29473593 29474502 NC_060944.1 CM039053.1 98.13 True relocation, inconsistency = -61844 27078334 27080947 29474607 29477221 NC_060944.1 CM039053.1 97.32 True relocation, inconsistency = -73075 27007997 27013597 29477346 29482946 NC_060944.1 CM039053.1 97.59 True relocation, inconsistency = 1090269 28103867 28106622 29482947 29485702 NC_060944.1 CM039053.1 99.37 True local misassembly 28102238 28108671 29486587 29493017 NC_060944.1 CM039053.1 99.39 True relocation, inconsistency = -377909 27730763 27731809 29493018 29494064 NC_060944.1 CM039053.1 98.84 True relocation, inconsistency = -592735 27139164 27140073 29494154 29495063 NC_060944.1 CM039053.1 98.13 True local misassembly 27137484 27139835 29495189 29497544 NC_060944.1 CM039053.1 97.42 True relocation, inconsistency = 547531 27687367 27693038 29497545 29503217 NC_060944.1 CM039053.1 98.84 True relocation, inconsistency = -774896 26926244 26928885 29511319 29513961 NC_060944.1 CM039053.1 96.22 True relocation, inconsistency = 309248 27239400 27242333 29515228 29518161 NC_060944.1 CM039053.1 97.48 True relocation, inconsistency = -137605 27105316 27110109 29518749 29523540 NC_060944.1 CM039053.1 97.79 True translocation 85596635 85598504 29526655 29524786 NC_060927.1 CM039053.1 98.93 True fake: not a misassembly (possible transposable element) 27138520 27140005 29526656 29528143 NC_060944.1 CM039053.1 98.32 True fake: not a misassembly (possible transposable element) 85596635 85598504 29531259 29529390 NC_060927.1 CM039053.1 98.82 True translocation 27162998 27165881 29531280 29534161 NC_060944.1 CM039053.1 98.37 True indel: indel (<= 5bp) 27166346 27168622 29534631 29536908 NC_060944.1 CM039053.1 97.98 True relocation, inconsistency = -194916 26973726 26977317 29536928 29540523 NC_060944.1 CM039053.1 97.41 True relocation, inconsistency = 2391298 29370821 29400945 29542729 29573170 NC_060944.1 CM039053.1 95.7 True indel: indel (<= 5bp) 29401060 29402098 29573283 29574321 NC_060944.1 CM039053.1 97.5 True local misassembly 29402579 29404252 29574459 29576132 NC_060944.1 CM039053.1 96.65 True indel: stretch of mismatches 29404285 29406333 29576165 29578213 NC_060944.1 CM039053.1 96.93 True indel: indel (<= 5bp) 29406335 29406938 29578214 29578817 NC_060944.1 CM039053.1 95.53 True local misassembly 29407823 29409263 29579360 29580800 NC_060944.1 CM039053.1 96.36 True relocation, inconsistency = 46944 29456208 29474582 29580801 29599166 NC_060944.1 CM039053.1 96.8 True fake: not a misassembly (possible transposable element) 29267290 29271196 29599606 29603513 NC_060944.1 CM039053.1 97.11 True fake: not a misassembly (possible transposable element) 29478768 29481107 29603697 29606036 NC_060944.1 CM039053.1 97.09 True local misassembly 29481449 29483182 29606037 29607770 NC_060944.1 CM039053.1 96.77 True local misassembly 29483524 29484315 29607771 29608562 NC_060944.1 CM039053.1 97.47 True indel: indel (<= 5bp) 29484317 29485098 29608563 29609344 NC_060944.1 CM039053.1 96.8 True indel: stretch of mismatches 29485196 29486192 29609442 29610438 NC_060944.1 CM039053.1 97.09 True local misassembly 29486980 29490730 29611225 29614975 NC_060944.1 CM039053.1 97.2 True indel: indel (<= 5bp) 29490731 29492607 29614977 29616853 NC_060944.1 CM039053.1 96.96 True indel: indel (<= 5bp) 29492608 29494806 29616855 29619053 NC_060944.1 CM039053.1 96.82 True indel: indel (<= 5bp) 29494808 29496349 29619054 29620595 NC_060944.1 CM039053.1 96.72 True relocation, inconsistency = -105664 29390686 29395098 29620596 29625008 NC_060944.1 CM039053.1 96.87 True indel: indel (<= 5bp) 29395100 29397479 29625009 29627388 NC_060944.1 CM039053.1 96.47 True local misassembly 29397938 29425471 29628189 29657766 NC_060944.1 CM039053.1 95.44 True relocation, inconsistency = 51727 29477199 29820906 29657767 30001391 NC_060944.1 CM039053.1 99.35 True local misassembly 29820897 30633613 30003600 30822010 NC_060944.1 CM039053.1 98.9 True local misassembly 30635480 30644448 30822011 30831056 NC_060944.1 CM039053.1 98.79 True local misassembly 30649402 30660572 30831057 30842227 NC_060944.1 CM039053.1 99.62 True fake: not a misassembly (possible transposable element) 30724024 30727244 30842228 30845449 NC_060944.1 CM039053.1 98.15 True fake: not a misassembly (possible transposable element) 30664382 30666435 30845450 30847504 NC_060944.1 CM039053.1 98.02 True local misassembly 30666595 30667161 30848177 30848743 NC_060944.1 CM039053.1 97.88 True local misassembly 30667674 30668474 30848744 30849544 NC_060944.1 CM039053.1 98.0 True indel: stretch of mismatches 30668552 30669651 30849622 30850721 NC_060944.1 CM039053.1 98.27 True indel: indel (<= 5bp) 30669843 30671110 30850912 30852179 NC_060944.1 CM039053.1 98.34 True local misassembly 30671407 30672575 30852818 30853986 NC_060944.1 CM039053.1 97.78 True indel: indel (<= 5bp) 30672576 30673942 30853989 30855355 NC_060944.1 CM039053.1 97.88 True indel: indel (<= 5bp) 30674016 30675347 30855431 30856762 NC_060944.1 CM039053.1 98.05 True local misassembly 30676545 30682879 30857789 30863953 NC_060944.1 CM039053.1 95.06 True local misassembly 30683180 30683716 30864424 30864960 NC_060944.1 CM039053.1 97.02 True local misassembly 30683717 30685417 30865303 30867003 NC_060944.1 CM039053.1 98.82 True local misassembly 30685418 30685961 30867349 30867892 NC_060944.1 CM039053.1 98.35 True local misassembly 30686585 30687334 30868341 30869090 NC_060944.1 CM039053.1 97.47 True indel: indel (<= 5bp) 30687336 30689213 30869091 30870968 NC_060944.1 CM039053.1 98.88 True indel: indel (<= 5bp) 30689214 30691884 30870970 30873640 NC_060944.1 CM039053.1 98.5 True relocation, inconsistency = 63396 30755401 30757904 30873761 30876264 NC_060944.1 CM039053.1 97.56 True indel: indel (<= 5bp) 30757905 30759491 30876266 30877852 NC_060944.1 CM039053.1 97.67 True local misassembly 30760467 30761327 30879343 30880203 NC_060944.1 CM039053.1 97.68 True local misassembly 30762625 30764874 30880992 30883241 NC_060944.1 CM039053.1 97.29 True relocation, inconsistency = -63747 30701914 30702969 30884028 30885083 NC_060944.1 CM039053.1 98.77 True indel: indel (<= 5bp) 30703165 30705876 30885277 30887988 NC_060944.1 CM039053.1 98.12 True relocation, inconsistency = 63569 30769483 30771699 30888026 30890242 NC_060944.1 CM039053.1 97.88 True indel: indel (<= 5bp) 30771700 30773066 30890244 30891610 NC_060944.1 CM039053.1 97.81 True indel: indel (<= 5bp) 30773067 30774433 30891612 30892978 NC_060944.1 CM039053.1 98.1 True indel: indel (<= 5bp) 30774434 30775800 30892980 30894346 NC_060944.1 CM039053.1 97.88 True indel: indel (<= 5bp) 30775801 30777167 30894348 30895714 NC_060944.1 CM039053.1 97.51 True indel: indel (<= 5bp) 30777168 30778534 30895716 30897082 NC_060944.1 CM039053.1 97.59 True indel: indel (<= 5bp) 30778535 30779901 30897084 30898450 NC_060944.1 CM039053.1 98.17 True indel: indel (<= 5bp) 30779902 30781268 30898452 30899818 NC_060944.1 CM039053.1 97.29 True indel: indel (<= 5bp) 30781269 30782635 30899820 30901186 NC_060944.1 CM039053.1 97.81 True indel: indel (<= 5bp) 30782636 30784002 30901188 30902554 NC_060944.1 CM039053.1 97.88 True indel: indel (<= 5bp) 30784003 30785369 30902556 30903922 NC_060944.1 CM039053.1 96.93 True indel: indel (<= 5bp) 30785370 30786611 30903924 30905165 NC_060944.1 CM039053.1 98.15 True indel: stretch of mismatches 30786737 30788103 30905291 30906657 NC_060944.1 CM039053.1 97.0 True indel: indel (<= 5bp) 30788104 30788912 30906659 30907467 NC_060944.1 CM039053.1 97.78 True local misassembly 30789471 30790478 30907856 30908863 NC_060944.1 CM039053.1 97.52 True local misassembly 30790838 30791394 30909736 30910292 NC_060944.1 CM039053.1 97.13 True local misassembly 30793263 30794807 30911482 30913026 NC_060944.1 CM039053.1 97.93 True local misassembly 30795960 30796516 30913837 30914393 NC_060944.1 CM039053.1 97.85 True local misassembly 30798207 30800292 30916940 30919028 NC_060944.1 CM039053.1 97.8 True relocation, inconsistency = -61685 30739808 30740779 30920229 30921200 NC_060944.1 CM039053.1 97.84 True indel: indel (<= 5bp) 30740781 30741805 30921201 30922225 NC_060944.1 CM039053.1 98.17 True relocation, inconsistency = 61138 30802944 30806891 30922226 30926174 NC_060944.1 CM039053.1 97.29 True local misassembly 30807537 30808125 30926651 30927241 NC_060944.1 CM039053.1 97.8 True local misassembly 30809059 30810379 30928009 30929326 NC_060944.1 CM039053.1 98.49 True local misassembly 30811170 30886663 30929781 31004919 NC_060944.1 CM039053.1 98.65 True local misassembly 30884225 30891367 31004920 31012064 NC_060944.1 CM039053.1 99.72 True local misassembly 30887445 30892244 31012065 31016865 NC_060944.1 CM039053.1 99.83 True translocation 14739114 14739726 31017948 31017336 NC_060939.1 CM039053.1 95.76 True indel: indel (<= 5bp) 14738258 14739113 31018806 31017951 NC_060939.1 CM039053.1 95.56 True translocation 30892235 30894673 31019751 31022189 NC_060944.1 CM039053.1 99.84 True local misassembly 30894674 30896378 31022532 31024236 NC_060944.1 CM039053.1 99.82 True indel: stretch of mismatches 30896398 30913737 31024256 31041595 NC_060944.1 CM039053.1 99.77 True local misassembly 30913738 30915984 31043822 31046068 NC_060944.1 CM039053.1 99.69 True indel: indel (> 5bp) 30915985 30918196 31046077 31048288 NC_060944.1 CM039053.1 99.69 True local misassembly 30920928 31280842 31048289 31408342 NC_060944.1 CM039053.1 99.61 True translocation 48438119 48439445 31408343 31409671 NC_060933.1 CM039053.1 95.4 True translocation 31280605 31727999 31409672 31858075 NC_060944.1 CM039053.1 99.73 True local misassembly 31730561 31790611 31858076 31918126 NC_060944.1 CM039053.1 99.32 True relocation, inconsistency = -10247 31780365 31783241 31918127 31921003 NC_060944.1 CM039053.1 98.59 True local misassembly 31786486 31787215 31921004 31922757 NC_060944.1 CM039053.1 95.0 True local misassembly 31785339 31788311 31922758 31925731 NC_060944.1 CM039053.1 99.43 True local misassembly 31785239 31843012 31925732 31983510 NC_060944.1 CM039053.1 99.88 True local misassembly 31839938 31842991 31983511 31986564 NC_060944.1 CM039053.1 99.69 True local misassembly 31843334 31843854 31986565 31987085 NC_060944.1 CM039053.1 95.97 True local misassembly 31843224 31844247 31990383 31991406 NC_060944.1 CM039053.1 96.68 True relocation, inconsistency = 31297 31878553 31879679 31994415 31995541 NC_060944.1 CM039053.1 96.36 True local misassembly 31883959 32050388 32000842 32167588 NC_060944.1 CM039053.1 99.69 True local misassembly 32050390 32062078 32172696 32184409 NC_060944.1 CM039053.1 99.35 True relocation, inconsistency = -11689 32050390 32063922 32184410 32197987 NC_060944.1 CM039053.1 99.43 True relocation, inconsistency = 20745 32084668 32146133 32197988 32259522 NC_060944.1 CM039053.1 99.28 True relocation, inconsistency = 8542 32154676 32181821 32259523 32286823 NC_060944.1 CM039053.1 97.41 True relocation, inconsistency = -14144 32168540 32169232 32287686 32288378 NC_060944.1 CM039053.1 99.86 True local misassembly 32172016 32172627 32291152 32291763 NC_060944.1 CM039053.1 99.35 True local misassembly 32173323 32175554 32292474 32294705 NC_060944.1 CM039053.1 99.78 True local misassembly 32176424 32177240 32295600 32296416 NC_060944.1 CM039053.1 99.39 True relocation, inconsistency = -44662 32133750 32134457 32297588 32298295 NC_060944.1 CM039053.1 99.86 True indel: indel (> 5bp) 32134951 32135672 32298749 32299470 NC_060944.1 CM039053.1 99.86 True local misassembly 32136209 32136802 32299992 32300585 NC_060944.1 CM039053.1 99.49 True indel: indel (<= 5bp) 32136808 32138019 32300586 32301797 NC_060944.1 CM039053.1 99.83 True indel: stretch of mismatches 32138185 32139387 32301963 32303165 NC_060944.1 CM039053.1 99.75 True local misassembly 32141216 32142721 32304934 32306439 NC_060944.1 CM039053.1 99.54 True local misassembly 32143336 32143934 32307039 32307637 NC_060944.1 CM039053.1 98.66 True indel: indel (<= 5bp) 32143935 32144643 32307643 32308351 NC_060944.1 CM039053.1 99.72 True local misassembly 32155098 32288304 32312588 32445939 NC_060944.1 CM039053.1 98.84 True local misassembly 32285412 32297656 32445940 32458204 NC_060944.1 CM039053.1 99.34 True relocation, inconsistency = 43133 32340790 32349981 32458205 32467401 NC_060944.1 CM039053.1 99.09 True relocation, inconsistency = -95981 32254001 32305415 32467402 32518472 NC_060944.1 CM039053.1 98.22 True relocation, inconsistency = 52426 32357842 32406344 32518473 32567090 NC_060944.1 CM039053.1 99.24 True relocation, inconsistency = 12182 32418527 32521885 32567091 32669968 NC_060944.1 CM039053.1 98.68 True local misassembly 32521868 32601131 32672917 32752267 NC_060944.1 CM039053.1 99.26 True relocation, inconsistency = 9516 32610648 32612951 32752268 32754561 NC_060944.1 CM039053.1 98.91 True local misassembly 32613822 32648034 32754562 32788854 NC_060944.1 CM039053.1 98.58 True relocation, inconsistency = 9107 32657142 32748497 32788855 32880193 NC_060944.1 CM039053.1 98.45 True relocation, inconsistency = 7178 32755676 32777693 32880194 32902142 NC_060944.1 CM039053.1 98.07 True relocation, inconsistency = -139481 32642929 32644103 32906859 32908033 NC_060944.1 CM039053.1 99.4 True local misassembly 32644924 32645486 32908959 32909521 NC_060944.1 CM039053.1 98.76 True local misassembly 32647416 32647915 32911467 32911966 NC_060944.1 CM039053.1 98.8 True relocation, inconsistency = 116431 32764933 32769652 32912553 32917302 NC_060944.1 CM039053.1 96.62 True relocation, inconsistency = -26628 32743025 32777693 32917303 32951962 NC_060944.1 CM039053.1 99.22 True relocation, inconsistency = -139466 32642929 32644103 32956664 32957838 NC_060944.1 CM039053.1 99.32 True local misassembly 32644924 32645486 32958759 32959321 NC_060944.1 CM039053.1 98.76 True local misassembly 32647416 32647915 32961287 32961786 NC_060944.1 CM039053.1 98.8 True relocation, inconsistency = 116431 32764933 32769652 32962373 32967127 NC_060944.1 CM039053.1 96.66 True relocation, inconsistency = -26628 32743025 32777693 32967128 33001787 NC_060944.1 CM039053.1 99.22 True relocation, inconsistency = -139466 32642929 32644103 33006489 33007663 NC_060944.1 CM039053.1 99.32 True local misassembly 32644924 32645486 33008584 33009146 NC_060944.1 CM039053.1 98.76 True local misassembly 32647416 32647915 33011112 33011611 NC_060944.1 CM039053.1 98.8 True local misassembly 32649429 32650603 33013075 33014249 NC_060944.1 CM039053.1 99.74 True local misassembly 32651490 32652057 33015166 33015733 NC_060944.1 CM039053.1 100.0 True local misassembly 32653303 32657171 33016953 33020781 NC_060944.1 CM039053.1 95.02 True relocation, inconsistency = 120499 32777867 32807311 33020978 33050237 NC_060944.1 CM039053.1 98.11 True local misassembly 32804130 32847770 33050238 33094223 NC_060944.1 CM039053.1 98.25 True local misassembly 32853798 32857408 33094224 33097819 NC_060944.1 CM039053.1 98.87 True relocation, inconsistency = 9801 32867210 34347299 33097820 34578030 NC_060944.1 CM039053.1 99.91 True local misassembly 34347631 36806777 34578276 37040660 NC_060944.1 CM039053.1 99.63 True indel: indel (> 5bp) 36806913 36817582 37040776 37051442 NC_060944.1 CM039053.1 99.58 True local misassembly 36818485 40438480 37051883 40673062 NC_060944.1 CM039053.1 99.84 True indel: indel (> 5bp) 40438584 40819576 40673145 41054214 NC_060944.1 CM039053.1 99.77 True local misassembly 40820663 45430212 41055376 45660455 NC_060944.1 CM039053.1 99.71 True local misassembly 45429709 45868672 45660456 46099853 NC_060944.1 CM039053.1 99.74 True local misassembly 45869437 49575175 46100992 49806666 NC_060944.1 CM039053.1 99.85 True local misassembly 49577886 49578765 49807519 49808398 NC_060944.1 CM039053.1 99.2 True local misassembly 49582118 50666326 49809604 50877029 NC_060944.1 CM039053.1 98.2 True indel: indel (> 5bp) 50666450 52435794 50877172 52647352 NC_060944.1 CM039053.1 99.74 True local misassembly 52436195 54374031 52647472 54588451 NC_060944.1 CM039053.1 99.58 True indel: indel (> 5bp) 54374071 54975600 54588507 55189986 NC_060944.1 CM039053.1 99.81 True local misassembly 54976438 57720300 55190439 57926131 NC_060944.1 CM039053.1 99.42 True local misassembly 57720455 57742220 57926496 57948285 NC_060944.1 CM039053.1 99.64 True local misassembly 57742329 58060421 57948526 58267210 NC_060944.1 CM039053.1 99.64 True indel: indel (> 5bp) 58060484 59976179 58267211 60182898 NC_060944.1 CM039053.1 99.76 True local misassembly 59977739 61139141 60184298 61346047 NC_060944.1 CM039053.1 99.8 True indel: indel (> 5bp) 61139137 63117321 61346062 63325562 NC_060944.1 CM039053.1 99.69 True local misassembly 63117993 63734553 63326391 63942801 NC_060944.1 CM039053.1 99.47 True local misassembly 63737192 64003878 63945997 64213375 NC_060944.1 CM039053.1 99.53 True local misassembly 64004565 64144940 64213975 64354705 NC_060944.1 CM039053.1 99.33 True indel: indel (> 5bp) 64145018 64194488 64354792 64404449 NC_060944.1 CM039053.1 99.37 True indel: indel (> 5bp) 64194665 64623115 64404596 64833478 NC_060944.1 CM039053.1 99.51 True indel: indel (> 5bp) 64623178 65168084 64833553 65379202 NC_060944.1 CM039053.1 99.12 True local misassembly 65168972 65420688 65379642 65630815 NC_060944.1 CM039053.1 99.02 True local misassembly 65422097 65508502 65632181 65718570 NC_060944.1 CM039053.1 97.68 True local misassembly 65514036 65768448 65725166 65980936 NC_060944.1 CM039053.1 98.89 True local misassembly 65768673 65915080 65981412 66130939 NC_060944.1 CM039053.1 97.56 True local misassembly 65915342 65939867 66131109 66155721 NC_060944.1 CM039053.1 99.3 True local misassembly 65941275 65942418 66157363 66158506 NC_060944.1 CM039053.1 99.56 True indel: indel (> 5bp) 65942480 66202674 66158603 66421192 NC_060944.1 CM039053.1 98.32 True CONTIG CM039053.1 66421192 misassembled 17358273 17365916 7644 1 NC_060942.1 CM039054.1 99.86 True relocation, inconsistency = 276244 17076173 17082028 13500 7645 NC_060942.1 CM039054.1 99.85 True translocation 11096757 11119279 13502 36028 NC_060945.1 CM039054.1 99.1 True relocation, inconsistency = 12409 11132157 11133285 36497 37625 NC_060945.1 CM039054.1 99.04 True relocation, inconsistency = -34161 11099125 11196770 37626 138675 NC_060945.1 CM039054.1 95.11 True relocation, inconsistency = 63913 11260684 11289897 138676 167891 NC_060945.1 CM039054.1 99.08 True relocation, inconsistency = -99771 11190127 11192128 167892 169893 NC_060945.1 CM039054.1 98.81 True local misassembly 11192469 11195011 169894 172436 NC_060945.1 CM039054.1 99.17 True indel: indel (<= 5bp) 11195012 11196307 172438 173733 NC_060945.1 CM039054.1 98.41 True local misassembly 11192569 11195011 173734 176176 NC_060945.1 CM039054.1 99.26 True indel: indel (<= 5bp) 11195012 11195901 176178 177067 NC_060945.1 CM039054.1 98.43 True indel: indel (<= 5bp) 11196044 11196724 177208 177888 NC_060945.1 CM039054.1 98.97 True local misassembly 11190777 11192128 177889 179240 NC_060945.1 CM039054.1 98.96 True local misassembly 11192469 11193141 179241 179913 NC_060945.1 CM039054.1 99.41 True indel: indel (<= 5bp) 11193143 11195011 179914 181782 NC_060945.1 CM039054.1 99.46 True indel: indel (<= 5bp) 11195012 11195963 181784 182735 NC_060945.1 CM039054.1 98.39 True relocation, inconsistency = -136797 11059167 11060619 182736 184188 NC_060945.1 CM039054.1 98.96 True local misassembly 11056881 11117414 184189 244710 NC_060945.1 CM039054.1 98.92 True relocation, inconsistency = -92800 11024615 11052694 244711 272786 NC_060945.1 CM039054.1 99.0 True relocation, inconsistency = -89242 10963453 11041488 272787 351481 NC_060945.1 CM039054.1 98.12 True local misassembly 11038769 11041970 351482 355023 NC_060945.1 CM039054.1 96.95 True relocation, inconsistency = 78350 11120321 11137851 355024 372221 NC_060945.1 CM039054.1 97.31 True relocation, inconsistency = -98403 11039449 11041967 372222 375080 NC_060945.1 CM039054.1 96.76 True relocation, inconsistency = 204283 11246251 11290410 375081 418744 NC_060945.1 CM039054.1 97.07 True local misassembly 11293909 11303884 421546 431521 NC_060945.1 CM039054.1 99.82 True relocation, inconsistency = -120314 11183571 11186130 431522 434081 NC_060945.1 CM039054.1 98.23 True relocation, inconsistency = 108264 11294395 11298290 434082 437977 NC_060945.1 CM039054.1 98.15 True translocation 17505146 17505704 438513 439071 NC_060937.1 CM039054.1 97.26 True relocation, inconsistency = -7433 17498272 17500795 439072 441595 NC_060937.1 CM039054.1 97.54 True local misassembly 17498601 17499435 441596 442430 NC_060937.1 CM039054.1 97.57 True local misassembly 17503766 17505012 442883 444130 NC_060937.1 CM039054.1 97.52 True local misassembly 17502036 17502928 445043 445935 NC_060937.1 CM039054.1 97.76 True indel: indel (<= 5bp) 17502929 17505021 445937 448029 NC_060937.1 CM039054.1 97.95 True local misassembly 17502929 17503467 448132 448670 NC_060937.1 CM039054.1 98.31 True local misassembly 17501275 17505012 448671 452407 NC_060937.1 CM039054.1 97.57 True local misassembly 17507825 17508692 452855 453724 NC_060937.1 CM039054.1 97.82 True relocation, inconsistency = -7947 17502036 17502928 455015 455907 NC_060937.1 CM039054.1 97.76 True indel: indel (<= 5bp) 17502929 17505021 455909 458001 NC_060937.1 CM039054.1 97.99 True local misassembly 17505858 17507092 459169 460403 NC_060937.1 CM039054.1 97.41 True indel: indel (<= 5bp) 17507094 17508449 460404 461759 NC_060937.1 CM039054.1 97.86 True translocation 11303875 12245592 463125 1403694 NC_060945.1 CM039054.1 99.63 True relocation, inconsistency = -29320 12216273 12432229 1403695 1619714 NC_060945.1 CM039054.1 99.8 True local misassembly 12432237 15326087 1620791 4512183 NC_060945.1 CM039054.1 99.7 True local misassembly 15328025 16610950 4513964 5802024 NC_060945.1 CM039054.1 99.4 True local misassembly 16611057 17380992 5802349 6572322 NC_060945.1 CM039054.1 99.72 True local misassembly 17381120 19774923 6572570 8966164 NC_060945.1 CM039054.1 99.83 True indel: indel (> 5bp) 19775016 21785942 8966242 10994224 NC_060945.1 CM039054.1 98.84 True indel: indel (> 5bp) 21786224 22749547 10994469 11958236 NC_060945.1 CM039054.1 99.58 True local misassembly 22749628 24988808 11958655 14197681 NC_060945.1 CM039054.1 99.87 True indel: indel (> 5bp) 24988868 25006389 14197735 14215239 NC_060945.1 CM039054.1 98.26 True fake: not a misassembly (possible transposable element) 25006429 25007398 14216226 14215257 NC_060945.1 CM039054.1 99.38 True fake: not a misassembly (possible transposable element) 25007471 31690171 14216227 20899296 NC_060945.1 CM039054.1 99.68 True local misassembly 31695365 33231870 20904346 22440985 NC_060945.1 CM039054.1 99.82 True local misassembly 33232313 34878998 22441161 24087743 NC_060945.1 CM039054.1 99.72 True local misassembly 34879204 37968299 24088437 27177829 NC_060945.1 CM039054.1 99.78 True indel: indel (> 5bp) 37968564 39071227 27178102 28279086 NC_060945.1 CM039054.1 99.58 True local misassembly 39071286 39863106 28279316 29070765 NC_060945.1 CM039054.1 99.79 True local misassembly 39864582 41282732 29071290 30491798 NC_060945.1 CM039054.1 99.44 True indel: indel (> 5bp) 41282818 41607779 30491853 30816902 NC_060945.1 CM039054.1 99.35 True local misassembly 41616807 42749670 30822687 31953991 NC_060945.1 CM039054.1 99.21 True local misassembly 42750565 42761285 31954724 31965328 NC_060945.1 CM039054.1 98.52 True local misassembly 42764174 43196762 31970474 32402844 NC_060945.1 CM039054.1 99.13 True indel: indel (> 5bp) 43197206 43618143 32403279 32823443 NC_060945.1 CM039054.1 99.58 True indel: indel (> 5bp) 43618196 43688420 32823548 32894097 NC_060945.1 CM039054.1 99.41 True local misassembly 43688621 43867614 32895108 33072940 NC_060945.1 CM039054.1 97.72 True local misassembly 43869450 43922251 33074228 33127208 NC_060945.1 CM039054.1 97.17 True local misassembly 43923467 43924190 33128255 33128978 NC_060945.1 CM039054.1 99.59 True indel: indel (> 5bp) 43924338 44282870 33129193 33487985 NC_060945.1 CM039054.1 99.9 True local misassembly 44283382 44362444 33488640 33567117 NC_060945.1 CM039054.1 99.08 True local misassembly 44363076 44430931 33567275 33634613 NC_060945.1 CM039054.1 99.07 True local misassembly 44432202 44689043 33635980 33888528 NC_060945.1 CM039054.1 96.86 True indel: indel (> 5bp) 44689092 45086134 33888590 34285102 NC_060945.1 CM039054.1 99.01 True translocation 61705595 61706419 34290906 34291730 NC_060943.1 CM039054.1 99.76 True local misassembly 61705546 61707364 34294246 34296049 NC_060943.1 CM039054.1 98.41 True CONTIG CM039054.1 34296955 misassembled 10588391 10722762 1 135596 NC_060946.1 CM039055.1 99.04 True local misassembly 10745566 10746079 159631 160144 NC_060946.1 CM039055.1 97.28 True fake: not a misassembly (possible transposable element) 7720722 7721507 161973 162738 NC_060945.1 CM039055.1 95.42 True fake: not a misassembly (possible transposable element) 10763270 10766613 180199 183601 NC_060946.1 CM039055.1 96.19 True local misassembly 10782115 10782898 198997 199780 NC_060946.1 CM039055.1 99.87 True local misassembly 10788405 10828711 204202 244683 NC_060946.1 CM039055.1 98.41 True fake: not a misassembly (possible transposable element) 10741695 10743989 254578 256902 NC_060946.1 CM039055.1 95.61 True fake: not a misassembly (possible transposable element) 10841816 10842381 257185 257735 NC_060946.1 CM039055.1 96.29 True local misassembly 10851038 10853512 265213 267662 NC_060946.1 CM039055.1 96.67 True local misassembly 10855700 10856219 270833 271347 NC_060946.1 CM039055.1 98.27 True relocation, inconsistency = -97711 10760310 10761212 273149 274046 NC_060946.1 CM039055.1 95.1 True relocation, inconsistency = 138160 10904982 10905613 279656 280287 NC_060946.1 CM039055.1 100.0 True local misassembly 10907748 10908321 282407 282980 NC_060946.1 CM039055.1 98.43 True relocation, inconsistency = -39302 10870396 10882773 284357 296714 NC_060946.1 CM039055.1 98.18 True relocation, inconsistency = 41257 10924031 10994040 296715 366263 NC_060946.1 CM039055.1 98.71 True translocation 7771772 7772903 378460 379591 NC_060945.1 CM039055.1 98.23 True local misassembly 7773578 7774087 379592 380101 NC_060945.1 CM039055.1 98.67 True translocation 10993021 11223721 380102 610778 NC_060946.1 CM039055.1 99.81 True indel: indel (> 5bp) 11223998 12317331 610999 1702611 NC_060946.1 CM039055.1 99.73 True local misassembly 12320067 12481059 1702612 1863527 NC_060946.1 CM039055.1 99.71 True relocation, inconsistency = 38357 12519417 12798717 1863528 2142807 NC_060946.1 CM039055.1 99.82 True relocation, inconsistency = 2288580 15087426 15089028 2142936 2144535 NC_060946.1 CM039055.1 96.66 True relocation, inconsistency = -2259109 12829920 12832876 2144536 2147492 NC_060946.1 CM039055.1 98.8 True relocation, inconsistency = 67985 12900862 12929654 2147493 2176282 NC_060946.1 CM039055.1 95.53 True relocation, inconsistency = -99334 12830321 12844324 2176283 2190464 NC_060946.1 CM039055.1 95.92 True relocation, inconsistency = 21649 12865974 12902731 2190465 2227222 NC_060946.1 CM039055.1 98.48 True relocation, inconsistency = -8177 12894555 12903312 2227223 2235980 NC_060946.1 CM039055.1 97.74 True relocation, inconsistency = -95072 12808241 12843785 2235981 2271705 NC_060946.1 CM039055.1 97.05 True relocation, inconsistency = 54364 12898150 12941905 2271706 2315463 NC_060946.1 CM039055.1 98.05 True relocation, inconsistency = -68146 12874109 12875470 2315813 2317174 NC_060946.1 CM039055.1 97.65 True indel: indel (<= 5bp) 12875471 12877801 2317177 2319507 NC_060946.1 CM039055.1 99.36 True local misassembly 12875471 12877758 2319564 2321851 NC_060946.1 CM039055.1 99.39 True local misassembly 12880923 12883210 2321950 2324237 NC_060946.1 CM039055.1 98.82 True local misassembly 12880923 12883210 2324336 2326623 NC_060946.1 CM039055.1 98.91 True relocation, inconsistency = -26924 12856287 12898625 2326624 2368799 NC_060946.1 CM039055.1 97.88 True indel: indel (<= 5bp) 12898791 12907439 2368967 2377617 NC_060946.1 CM039055.1 98.15 True relocation, inconsistency = -39528 12867912 12907510 2377618 2417218 NC_060946.1 CM039055.1 98.37 True relocation, inconsistency = -60151 12847360 12856535 2417219 2426218 NC_060946.1 CM039055.1 96.13 True local misassembly 12860626 12884912 2426219 2450499 NC_060946.1 CM039055.1 98.14 True local misassembly 12882187 12893018 2450500 2461331 NC_060946.1 CM039055.1 97.89 True relocation, inconsistency = -81445 12811574 12834454 2461332 2484380 NC_060946.1 CM039055.1 96.43 True relocation, inconsistency = 52995 12887450 12919617 2484381 2516553 NC_060946.1 CM039055.1 98.03 True relocation, inconsistency = -59976 12859642 12884849 2516554 2541753 NC_060946.1 CM039055.1 97.93 True local misassembly 12882124 12888365 2541754 2547994 NC_060946.1 CM039055.1 98.05 True relocation, inconsistency = -29993 12858373 12882614 2547995 2572231 NC_060946.1 CM039055.1 98.1 True relocation, inconsistency = -71906 12810709 12825623 2572232 2587150 NC_060946.1 CM039055.1 98.5 True relocation, inconsistency = 138685 12964395 12966781 2587237 2589623 NC_060946.1 CM039055.1 97.11 True indel: indel (<= 5bp) 12966782 12969320 2589626 2592164 NC_060946.1 CM039055.1 97.28 True local misassembly 12970194 12974541 2592696 2597043 NC_060946.1 CM039055.1 97.95 True local misassembly 12974884 12976227 2597044 2598387 NC_060946.1 CM039055.1 97.99 True indel: indel (<= 5bp) 12976229 12978227 2598388 2600386 NC_060946.1 CM039055.1 97.7 True relocation, inconsistency = -71200 12907028 12908180 2600387 2601539 NC_060946.1 CM039055.1 97.75 True indel: indel (<= 5bp) 12908181 12910906 2601542 2604267 NC_060946.1 CM039055.1 96.74 True indel: indel (<= 5bp) 12910907 12912268 2604270 2605631 NC_060946.1 CM039055.1 95.59 True indel: indel (<= 5bp) 12912269 12914994 2605634 2608359 NC_060946.1 CM039055.1 98.97 True indel: indel (<= 5bp) 12914995 12917282 2608362 2610649 NC_060946.1 CM039055.1 98.73 True relocation, inconsistency = -41908 12875375 12878495 2610650 2613432 NC_060946.1 CM039055.1 96.88 True relocation, inconsistency = -13632 12864864 12904133 2613433 2652706 NC_060946.1 CM039055.1 98.12 True relocation, inconsistency = -38164 12865970 12893010 2652707 2679749 NC_060946.1 CM039055.1 98.21 True local misassembly 12895739 12901978 2679750 2685991 NC_060946.1 CM039055.1 98.24 True relocation, inconsistency = -32712 12869267 12887865 2685992 2704586 NC_060946.1 CM039055.1 98.25 True relocation, inconsistency = -34080 12853786 12867702 2704587 2718500 NC_060946.1 CM039055.1 97.96 True relocation, inconsistency = 9544 12877247 12906960 2718501 2748388 NC_060946.1 CM039055.1 97.64 True relocation, inconsistency = -27258 12879703 12905116 2748389 2773808 NC_060946.1 CM039055.1 98.02 True local misassembly 12902879 12941905 2774299 2813324 NC_060946.1 CM039055.1 97.94 True relocation, inconsistency = -130510 12811396 12844693 2813325 2846803 NC_060946.1 CM039055.1 97.0 True relocation, inconsistency = -14988 12829706 12838951 2846804 2856048 NC_060946.1 CM039055.1 96.34 True indel: stretch of mismatches 12838952 12848996 2856049 2866264 NC_060946.1 CM039055.1 95.44 True relocation, inconsistency = -31008 12817989 12841456 2866265 2889906 NC_060946.1 CM039055.1 96.28 True local misassembly 12838957 12858411 2890133 2909754 NC_060946.1 CM039055.1 95.61 True relocation, inconsistency = -32370 12826042 12845896 2909755 2929441 NC_060946.1 CM039055.1 97.62 True relocation, inconsistency = 80256 12926153 12927261 2929442 2930550 NC_060946.1 CM039055.1 97.2 True indel: indel (<= 5bp) 12927262 12929206 2930553 2932497 NC_060946.1 CM039055.1 98.46 True local misassembly 12929817 12932587 2932767 2935537 NC_060946.1 CM039055.1 99.57 True relocation, inconsistency = -9541 12923448 12935185 2935939 2947680 NC_060946.1 CM039055.1 97.89 True relocation, inconsistency = -27256 12907930 12941584 2947681 2981341 NC_060946.1 CM039055.1 98.11 True relocation, inconsistency = -21807 12919778 12925934 2981342 2987498 NC_060946.1 CM039055.1 98.33 True local misassembly 12919120 12933348 2987499 3001736 NC_060946.1 CM039055.1 97.75 True local misassembly 12932329 12942664 3001737 3012072 NC_060946.1 CM039055.1 98.39 True local misassembly 12938577 12960890 3012073 3034388 NC_060946.1 CM039055.1 97.96 True relocation, inconsistency = -16354 12944537 12958259 3034389 3048115 NC_060946.1 CM039055.1 97.25 True local misassembly 12954174 12959860 3048116 3053808 NC_060946.1 CM039055.1 97.42 True relocation, inconsistency = 2035356 14995217 15011915 3053809 3070505 NC_060946.1 CM039055.1 98.16 True local misassembly 15012596 15014616 3070506 3072526 NC_060946.1 CM039055.1 98.8 True relocation, inconsistency = -966211 14048406 14059377 3072527 3083498 NC_060946.1 CM039055.1 98.36 True relocation, inconsistency = -971344 13088034 13088657 3083499 3084122 NC_060946.1 CM039055.1 97.29 True relocation, inconsistency = 961114 14049772 14061861 3084123 3096215 NC_060946.1 CM039055.1 97.92 True relocation, inconsistency = 957347 15019209 15021459 3096216 3098470 NC_060946.1 CM039055.1 98.01 True relocation, inconsistency = -977802 14045889 14054490 3100702 3109303 NC_060946.1 CM039055.1 97.91 True relocation, inconsistency = 947802 15002293 15019950 3109304 3126958 NC_060946.1 CM039055.1 97.29 True relocation, inconsistency = -10912 15009039 15010525 3126959 3128455 NC_060946.1 CM039055.1 97.7 True relocation, inconsistency = -1826748 13183778 13189247 3128456 3133926 NC_060946.1 CM039055.1 98.78 True relocation, inconsistency = 934873 14124121 14125343 3133927 3135149 NC_060946.1 CM039055.1 99.23 True local misassembly 14129436 14138555 3135150 3144269 NC_060946.1 CM039055.1 99.13 True relocation, inconsistency = 1025860 15164655 15173016 3144509 3152871 NC_060946.1 CM039055.1 99.06 True relocation, inconsistency = -353462 14819555 14823797 3152872 3157114 NC_060946.1 CM039055.1 99.04 True local misassembly 14816980 14826525 3157115 3166662 NC_060946.1 CM039055.1 99.14 True relocation, inconsistency = -1019495 13807031 13817486 3166663 3177118 NC_060946.1 CM039055.1 99.32 True translocation 11049009 11052018 3177119 3180127 NC_060938.1 CM039055.1 98.38 True translocation 15377387 15380908 3180128 3183649 NC_060946.1 CM039055.1 98.47 True local misassembly 15385000 15412359 3183650 3210677 NC_060946.1 CM039055.1 96.97 True relocation, inconsistency = 217302 15629885 15640287 3210901 3221303 NC_060946.1 CM039055.1 98.25 True relocation, inconsistency = -556363 15083930 15089382 3221309 3226753 NC_060946.1 CM039055.1 97.6 True relocation, inconsistency = 251089 15341377 15358779 3227659 3244723 NC_060946.1 CM039055.1 96.28 True fake: not a misassembly (possible transposable element) 15079049 15080220 3244724 3245897 NC_060946.1 CM039055.1 98.76 True fake: not a misassembly (possible transposable element) 15357226 15362638 3245898 3251309 NC_060946.1 CM039055.1 97.89 True relocation, inconsistency = -278714 15083930 15089382 3251315 3256759 NC_060946.1 CM039055.1 97.6 True local misassembly 15086313 15086961 3256760 3257408 NC_060946.1 CM039055.1 98.5 True relocation, inconsistency = -18752 15068486 15073867 3257685 3263067 NC_060946.1 CM039055.1 98.05 True relocation, inconsistency = 556017 15629885 15640287 3263068 3273470 NC_060946.1 CM039055.1 98.26 True relocation, inconsistency = -556363 15083930 15089382 3273476 3278920 NC_060946.1 CM039055.1 97.58 True local misassembly 15086313 15086961 3278921 3279569 NC_060946.1 CM039055.1 98.5 True relocation, inconsistency = 283144 15370830 15417052 3280294 3326185 NC_060946.1 CM039055.1 97.36 True relocation, inconsistency = -10912 15406141 15416933 3326186 3336978 NC_060946.1 CM039055.1 97.19 True relocation, inconsistency = 18410 15435344 15477815 3336979 3379325 NC_060946.1 CM039055.1 97.69 True relocation, inconsistency = -105017 15372826 15385789 3379353 3392259 NC_060946.1 CM039055.1 97.71 True relocation, inconsistency = -298148 15087645 15096546 3392263 3401162 NC_060946.1 CM039055.1 97.98 True relocation, inconsistency = 274281 15370828 15417107 3401163 3447383 NC_060946.1 CM039055.1 97.96 True relocation, inconsistency = -317919 15099189 15105110 3447384 3453305 NC_060946.1 CM039055.1 97.29 True relocation, inconsistency = 39202 15144313 15158981 3453306 3468316 NC_060946.1 CM039055.1 96.44 True relocation, inconsistency = 32389 15191371 15194319 3468317 3471265 NC_060946.1 CM039055.1 99.22 True relocation, inconsistency = -41255 15153079 15166986 3471280 3485186 NC_060946.1 CM039055.1 98.57 True relocation, inconsistency = -397105 14769882 14778080 3485187 3493387 NC_060946.1 CM039055.1 99.15 True relocation, inconsistency = 368808 15147023 15149622 3493522 3496121 NC_060946.1 CM039055.1 98.74 True relocation, inconsistency = -31704 15117919 15127953 3496122 3505814 NC_060946.1 CM039055.1 95.43 True local misassembly 15121477 15126083 3505815 3510421 NC_060946.1 CM039055.1 98.87 True relocation, inconsistency = 53865 15179949 15191140 3510422 3521542 NC_060946.1 CM039055.1 96.27 True relocation, inconsistency = -99275 15091866 15111850 3521543 3541188 NC_060946.1 CM039055.1 96.35 True local misassembly 15115943 15120112 3541189 3545357 NC_060946.1 CM039055.1 98.46 True local misassembly 15117919 15127423 3545550 3555054 NC_060946.1 CM039055.1 95.88 True relocation, inconsistency = 52501 15179925 15196860 3555055 3571990 NC_060946.1 CM039055.1 99.1 True local misassembly 15200952 15202494 3571991 3573533 NC_060946.1 CM039055.1 98.11 True relocation, inconsistency = 96650 15299145 15317415 3573534 3591457 NC_060946.1 CM039055.1 96.52 True relocation, inconsistency = -224837 15092579 15104644 3591458 3603520 NC_060946.1 CM039055.1 98.14 True fake: not a misassembly (possible transposable element) 15115551 15120090 3603521 3608059 NC_060946.1 CM039055.1 98.49 True fake: not a misassembly (possible transposable element) 15112249 15120112 3608060 3615922 NC_060946.1 CM039055.1 98.63 True relocation, inconsistency = 178812 15298925 15299699 3615923 3616697 NC_060946.1 CM039055.1 99.5 True indel: indel (<= 5bp) 15299701 15302652 3616698 3619649 NC_060946.1 CM039055.1 98.48 True relocation, inconsistency = -112674 15189979 15210419 3619650 3640089 NC_060946.1 CM039055.1 98.97 True relocation, inconsistency = 25570 15236307 15245822 3640407 3649922 NC_060946.1 CM039055.1 98.77 True local misassembly 15246845 15248186 3649923 3651264 NC_060946.1 CM039055.1 99.17 True relocation, inconsistency = -33747 15214440 15220575 3651265 3657400 NC_060946.1 CM039055.1 99.34 True local misassembly 15221940 15230803 3657401 3666264 NC_060946.1 CM039055.1 99.15 True local misassembly 15224326 15231104 3666265 3673040 NC_060946.1 CM039055.1 99.07 True relocation, inconsistency = 43290 15274395 15286027 3673041 3684669 NC_060946.1 CM039055.1 98.96 True relocation, inconsistency = -103975 15182053 15202011 3684670 3704628 NC_060946.1 CM039055.1 98.43 True local misassembly 15208829 15220597 3704629 3716397 NC_060946.1 CM039055.1 98.55 True relocation, inconsistency = -9206 15211392 15220597 3716398 3725603 NC_060946.1 CM039055.1 98.83 True local misassembly 15214120 15219559 3725604 3731043 NC_060946.1 CM039055.1 98.87 True relocation, inconsistency = -14659 15204901 15206880 3731044 3733023 NC_060946.1 CM039055.1 98.64 True local misassembly 15212337 15220875 3733024 3741562 NC_060946.1 CM039055.1 98.75 True relocation, inconsistency = -10228 15210648 15220875 3741563 3751790 NC_060946.1 CM039055.1 98.86 True relocation, inconsistency = -10228 15210648 15224347 3751791 3765486 NC_060946.1 CM039055.1 98.88 True relocation, inconsistency = 12611 15236959 15240770 3765487 3769298 NC_060946.1 CM039055.1 99.53 True indel: indel (<= 5bp) 15240772 15242489 3769299 3771016 NC_060946.1 CM039055.1 99.77 True indel: indel (<= 5bp) 15242491 15244778 3771017 3773304 NC_060946.1 CM039055.1 99.74 True local misassembly 15244779 15245814 3773647 3774682 NC_060946.1 CM039055.1 99.13 True relocation, inconsistency = -27615 15219554 15224325 3776037 3780808 NC_060946.1 CM039055.1 99.37 True relocation, inconsistency = 52496 15276822 15305629 3780809 3809103 NC_060946.1 CM039055.1 96.87 True local misassembly 15309721 15311039 3809104 3810423 NC_060946.1 CM039055.1 98.76 True local misassembly 15315132 15324752 3810424 3820042 NC_060946.1 CM039055.1 98.61 True relocation, inconsistency = 30005 15354758 15358569 3820043 3823853 NC_060946.1 CM039055.1 98.0 True relocation, inconsistency = 23528 15382098 15388470 3823854 3830228 NC_060946.1 CM039055.1 98.48 True local misassembly 15387108 15421621 3830229 3864741 NC_060946.1 CM039055.1 98.06 True relocation, inconsistency = 10911 15432533 15460515 3864742 3892723 NC_060946.1 CM039055.1 98.32 True local misassembly 15456424 15480303 3892724 3916641 NC_060946.1 CM039055.1 97.67 True relocation, inconsistency = -40957 15439347 15490823 3916642 3968007 NC_060946.1 CM039055.1 97.9 True local misassembly 15497644 15518192 3968008 3988555 NC_060946.1 CM039055.1 98.34 True local misassembly 15523086 15529224 3988678 3994815 NC_060946.1 CM039055.1 99.43 True relocation, inconsistency = -56716 15472509 15503160 3994816 4025356 NC_060946.1 CM039055.1 98.07 True local misassembly 15500433 15508366 4025357 4033287 NC_060946.1 CM039055.1 98.31 True relocation, inconsistency = 8182 15516549 15534328 4033288 4051066 NC_060946.1 CM039055.1 99.22 True relocation, inconsistency = 23186 15557515 15562957 4051067 4056509 NC_060946.1 CM039055.1 98.83 True relocation, inconsistency = -42622 15520336 15526672 4056510 4062845 NC_060946.1 CM039055.1 98.83 True local misassembly 15519854 15534328 4062846 4077319 NC_060946.1 CM039055.1 98.84 True relocation, inconsistency = 12278 15546607 15557628 4077320 4088339 NC_060946.1 CM039055.1 98.69 True relocation, inconsistency = -52510 15505728 15516828 4088949 4100052 NC_060946.1 CM039055.1 98.01 True relocation, inconsistency = 25917 15542746 15550611 4100053 4107916 NC_060946.1 CM039055.1 98.76 True relocation, inconsistency = -32056 15518556 15534647 4107917 4124008 NC_060946.1 CM039055.1 99.22 True fake: not a misassembly (possible transposable element) 15551017 15556408 4124009 4129399 NC_060946.1 CM039055.1 98.73 True fake: not a misassembly (possible transposable element) 15542790 15545091 4129416 4131716 NC_060946.1 CM039055.1 95.13 True local misassembly 15547820 15557628 4131717 4141185 NC_060946.1 CM039055.1 95.24 True local misassembly 15562743 15563566 4141186 4142009 NC_060946.1 CM039055.1 98.79 True indel: indel (<= 5bp) 15563567 15564667 4142011 4143111 NC_060946.1 CM039055.1 98.25 True local misassembly 15567396 15581941 4143112 4157654 NC_060946.1 CM039055.1 99.11 True relocation, inconsistency = 20452 15602394 15615599 4157655 4170858 NC_060946.1 CM039055.1 98.96 True relocation, inconsistency = -10910 15604690 15605554 4170859 4171724 NC_060946.1 CM039055.1 98.73 True local misassembly 15601464 15617833 4171725 4188093 NC_060946.1 CM039055.1 99.02 True relocation, inconsistency = 42958 15660792 15668757 4188094 4196058 NC_060946.1 CM039055.1 98.56 True local misassembly 15661938 15669872 4196059 4203991 NC_060946.1 CM039055.1 98.83 True relocation, inconsistency = 16367 15686240 15705581 4203992 4223334 NC_060946.1 CM039055.1 98.45 True relocation, inconsistency = -312771 15392811 15400825 4223335 4231348 NC_060946.1 CM039055.1 97.85 True relocation, inconsistency = -29998 15370828 15415889 4231349 4275405 NC_060946.1 CM039055.1 95.84 True relocation, inconsistency = -45002 15370888 15413101 4275406 4316945 NC_060946.1 CM039055.1 96.56 True relocation, inconsistency = -42274 15370828 15417107 4316946 4363229 NC_060946.1 CM039055.1 98.02 True relocation, inconsistency = 23866 15440974 15460515 4363230 4382772 NC_060946.1 CM039055.1 98.18 True relocation, inconsistency = -24552 15435964 15474447 4382773 4421254 NC_060946.1 CM039055.1 98.09 True relocation, inconsistency = -27280 15447168 15455852 4421255 4429937 NC_060946.1 CM039055.1 97.96 True relocation, inconsistency = 18241 15474094 15480360 4429938 4436167 NC_060946.1 CM039055.1 98.25 True relocation, inconsistency = -51360 15429066 15436198 4436233 4443365 NC_060946.1 CM039055.1 97.84 True local misassembly 15439335 15470832 4443774 4475304 NC_060946.1 CM039055.1 97.83 True local misassembly 15474078 15492249 4475313 4493410 NC_060946.1 CM039055.1 97.93 True relocation, inconsistency = -45123 15447127 15452148 4493411 4498432 NC_060946.1 CM039055.1 98.27 True relocation, inconsistency = -97854 15354295 15364417 4498433 4508551 NC_060946.1 CM039055.1 98.29 True relocation, inconsistency = 126609 15491027 15501562 4508552 4519085 NC_060946.1 CM039055.1 98.32 True relocation, inconsistency = -164800 15336763 15362009 4519086 4544334 NC_060946.1 CM039055.1 98.03 True relocation, inconsistency = 219694 15581704 15592563 4544335 4555199 NC_060946.1 CM039055.1 98.79 True relocation, inconsistency = 59324 15651888 15673340 4555200 4576647 NC_060946.1 CM039055.1 98.62 True relocation, inconsistency = 20458 15693799 15696864 4576648 4579713 NC_060946.1 CM039055.1 98.86 True indel: stretch of mismatches 15696865 15704838 4579714 4587686 NC_060946.1 CM039055.1 99.05 True relocation, inconsistency = -45009 15659830 15674339 4587687 4602195 NC_060946.1 CM039055.1 98.75 True relocation, inconsistency = 9549 15683889 15706641 4602196 4624950 NC_060946.1 CM039055.1 99.13 True local misassembly 15702552 15707058 4624951 4629458 NC_060946.1 CM039055.1 98.56 True relocation, inconsistency = -643304 15063755 15080898 4629459 4646604 NC_060946.1 CM039055.1 98.27 True local misassembly 15075445 15077273 4646605 4648433 NC_060946.1 CM039055.1 98.2 True local misassembly 15081783 15086503 4648513 4653232 NC_060946.1 CM039055.1 98.43 True relocation, inconsistency = 618417 15704921 16527480 4653233 5473595 NC_060946.1 CM039055.1 99.34 True local misassembly 16531479 16573276 5475545 5515644 NC_060946.1 CM039055.1 95.75 True local misassembly 16573958 16660437 5515645 5602472 NC_060946.1 CM039055.1 98.67 True translocation 42478911 42480403 5602740 5604232 NC_060933.1 CM039055.1 97.52 True local misassembly 42480404 42481529 5604404 5605529 NC_060933.1 CM039055.1 96.8 True translocation 16660406 16855663 5606078 5801224 NC_060946.1 CM039055.1 99.15 True local misassembly 16858379 18545042 5801225 7471483 NC_060946.1 CM039055.1 98.26 True local misassembly 18546053 19067644 7471855 7992333 NC_060946.1 CM039055.1 99.43 True relocation, inconsistency = -187796 18901096 18909111 8000559 7992334 NC_060946.1 CM039055.1 98.19 True relocation, inconsistency = 169892 19079004 19262730 8000560 8184303 NC_060946.1 CM039055.1 99.74 True relocation, inconsistency = -390180 18873825 18876062 8185578 8187786 NC_060946.1 CM039055.1 96.31 True local misassembly 18877257 18878345 8189074 8190162 NC_060946.1 CM039055.1 98.99 True local misassembly 18879424 19051197 8191489 8363240 NC_060946.1 CM039055.1 99.32 True relocation, inconsistency = 2527907 21593528 21594205 8364215 8363241 NC_060946.1 CM039055.1 99.02 True relocation, inconsistency = 1139399 19248475 20454128 8364216 9577183 NC_060946.1 CM039055.1 99.12 True local misassembly 20453597 20542493 9577184 9665539 NC_060946.1 CM039055.1 99.07 True local misassembly 20543514 20722024 9666437 9845093 NC_060946.1 CM039055.1 99.71 True relocation, inconsistency = 17886 20739911 21736341 9845094 10838220 NC_060946.1 CM039055.1 99.48 True local misassembly 21736373 21791503 10839222 10894322 NC_060946.1 CM039055.1 98.74 True inversion 21856605 21968991 11007251 10894885 NC_060946.1 CM039055.1 99.73 True relocation, inconsistency = -63739 21905253 22534358 11007252 11636184 NC_060946.1 CM039055.1 99.76 True local misassembly 22534385 23559258 11636319 12664009 NC_060946.1 CM039055.1 97.57 True local misassembly 23560390 24104885 12664010 13208796 NC_060946.1 CM039055.1 99.67 True indel: indel (> 5bp) 24105018 24376527 13208907 13478506 NC_060946.1 CM039055.1 98.99 True relocation, inconsistency = 47155 24427274 24428110 13482098 13482934 NC_060946.1 CM039055.1 98.09 True local misassembly 24428573 24430117 13484944 13486487 NC_060946.1 CM039055.1 97.99 True relocation, inconsistency = 19802 24379637 24408769 13515646 13486489 NC_060946.1 CM039055.1 98.41 True relocation, inconsistency = -30462 24376526 24408146 13515647 13547306 NC_060946.1 CM039055.1 97.71 True relocation, inconsistency = 54241 24462388 25244825 13547307 14329954 NC_060946.1 CM039055.1 99.85 True indel: indel (> 5bp) 25244939 30917887 14330108 20001929 NC_060946.1 CM039055.1 99.73 True local misassembly 30918010 31087309 20001930 20171313 NC_060946.1 CM039055.1 99.79 True local misassembly 31087500 33036163 20171692 22120354 NC_060946.1 CM039055.1 99.67 True local misassembly 33036533 34854280 22120463 23942016 NC_060946.1 CM039055.1 99.54 True local misassembly 34855014 38572251 23942672 27658144 NC_060946.1 CM039055.1 99.78 True local misassembly 38573005 39681842 27658714 28766937 NC_060946.1 CM039055.1 99.65 True local misassembly 39682503 42418690 28767469 31500428 NC_060946.1 CM039055.1 99.72 True local misassembly 42419497 42803378 31501735 31885794 NC_060946.1 CM039055.1 99.68 True local misassembly 42804121 43761832 31886402 32843401 NC_060946.1 CM039055.1 99.49 True local misassembly 43762189 43982356 32844105 33066634 NC_060946.1 CM039055.1 97.83 True local misassembly 43982581 44463523 33067066 33546884 NC_060946.1 CM039055.1 99.49 True indel: indel (<= 5bp) 44463601 45136673 33546958 34220214 NC_060946.1 CM039055.1 99.68 True indel: indel (> 5bp) 45136737 45713227 34220312 34797067 NC_060946.1 CM039055.1 99.57 True local misassembly 45713379 46414046 34797070 35497498 NC_060946.1 CM039055.1 99.66 True indel: indel (> 5bp) 46414040 46955112 35497528 36038095 NC_060946.1 CM039055.1 99.67 True local misassembly 46956816 47122319 36039576 36204792 NC_060946.1 CM039055.1 98.75 True local misassembly 47122495 47559048 36205424 36641880 NC_060946.1 CM039055.1 99.59 True indel: indel (> 5bp) 47559367 47869360 36642223 36951891 NC_060946.1 CM039055.1 99.5 True local misassembly 47869629 49114898 36952421 38197215 NC_060946.1 CM039055.1 99.54 True indel: indel (> 5bp) 49115012 49229901 38197312 38312324 NC_060946.1 CM039055.1 99.13 True local misassembly 49230198 49406585 38312862 38490005 NC_060946.1 CM039055.1 99.15 True indel: indel (> 5bp) 49406598 49467162 38490049 38551025 NC_060946.1 CM039055.1 97.68 True local misassembly 49467591 49623378 38551294 38707326 NC_060946.1 CM039055.1 99.55 True indel: indel (> 5bp) 49623531 51058458 38707449 40142432 NC_060946.1 CM039055.1 99.15 True indel: indel (> 5bp) 51058519 51196263 40142433 40281776 NC_060946.1 CM039055.1 98.5 True local misassembly 51197989 51321977 40283450 40408752 NC_060946.1 CM039055.1 98.49 True CONTIG CM039055.1 40413461 misassembled 61705538 61707028 1483 4 NC_060943.1 CM039056.1 98.86 True translocation 154257685 154259528 7286 5468 NC_060947.1 CM039056.1 98.59 True translocation 239 1353 7294 8408 NC_060943.1 CM039056.1 95.69 True translocation 2709 1012074 10778 1020120 NC_060948.1 CM039056.1 99.99 True local misassembly 1012983 6090348 1020997 6098395 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = -24311 6066051 9308012 6098409 9340369 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 744273 10052486 18857802 9340570 18146239 NC_060948.1 CM039056.1 100.0 True relocation, inconsistency = -190266 18667537 18861259 18339953 18146240 NC_060948.1 CM039056.1 99.99 True relocation, scaffold gap is present, inconsistency = 446151 19307611 22956734 18340154 21989242 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 1280686 24237621 24351113 21989443 22102935 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 510113 23302185 23727494 22528257 22102949 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = -2503342 24335741 25805326 23997988 22528458 NC_060948.1 CM039056.1 99.97 True inversion, scaffold gap is present 25805327 26139525 23998489 24332686 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 781897 26921436 28277244 24332700 25688513 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = -19158 28258287 28695854 25688714 26126281 NC_060948.1 CM039056.1 100.0 True relocation, inconsistency = 48961 28744816 29871042 26126282 27252513 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 29871043 29922598 27252514 27304069 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 760351 30683150 31234497 27304270 27855615 NC_060948.1 CM039056.1 99.99 True relocation, inconsistency = 89223 31323721 33677201 27855616 30209061 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 33677202 34216863 30209062 30748898 NC_060948.1 CM039056.1 99.99 True relocation, inconsistency = 245329 34462193 34778164 30748899 31064871 NC_060948.1 CM039056.1 99.97 True relocation, inconsistency = 309485 35087650 35403458 31064872 31380681 NC_060948.1 CM039056.1 99.96 True relocation, inconsistency = 7665311 43068770 44001665 31380682 32313574 NC_060948.1 CM039056.1 99.99 True relocation, inconsistency = -5194117 38807549 38880747 32313575 32386773 NC_060948.1 CM039056.1 99.91 True indel: stretch of mismatches 38880748 38905787 32386774 32411813 NC_060948.1 CM039056.1 99.92 True relocation, inconsistency = 5204571 44110359 44214492 32411814 32515928 NC_060948.1 CM039056.1 99.93 True relocation, scaffold gap is present, inconsistency = 3448262 47662955 48230301 32516129 33083473 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 48230302 48238716 33083474 33091888 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 48238717 48257840 33091889 33111012 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 48257841 48260061 33111013 33113233 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 48260062 50096146 33113234 34949318 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 50096147 51130814 34949319 35983986 NC_060948.1 CM039056.1 100.0 True relocation, inconsistency = 14249 51145064 51404175 35983987 36243094 NC_060948.1 CM039056.1 99.95 True relocation, inconsistency = 1564824 52969000 53007934 36243095 36282029 NC_060948.1 CM039056.1 99.78 True relocation, inconsistency = -1576913 51431022 51819129 36282030 36670137 NC_060948.1 CM039056.1 99.99 True indel: stretch of mismatches 51819130 52075685 36670138 36926692 NC_060948.1 CM039056.1 99.96 True relocation, inconsistency = 1608100 53683786 53723992 36926693 36966899 NC_060948.1 CM039056.1 99.93 True relocation, inconsistency = -1617766 52106227 52316722 36966900 37177395 NC_060948.1 CM039056.1 99.98 True relocation, inconsistency = 1531887 53848610 55036902 37177396 38365703 NC_060948.1 CM039056.1 99.99 True indel: stretch of mismatches 55036903 55094096 38365704 38422897 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 55094097 57199327 38422898 40528139 NC_060948.1 CM039056.1 100.0 True relocation, inconsistency = 1109929 58309257 58327366 40528140 40546249 NC_060948.1 CM039056.1 99.91 True relocation, scaffold gap is present, inconsistency = 2622053 60949620 61533956 41130786 40546450 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 60840688 60949619 41239718 41130787 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 59703558 60840687 42376828 41239719 NC_060948.1 CM039056.1 100.0 True relocation, inconsistency = 2027575 57593532 57675982 42459278 42376829 NC_060948.1 CM039056.1 99.96 True indel: stretch of mismatches 57471512 57593531 42581298 42459279 NC_060948.1 CM039056.1 100.0 True relocation, scaffold gap is present, inconsistency = 17332028 39503895 40112756 42581499 43190360 NC_060948.1 CM039056.1 99.99 True local misassembly 40117592 40917205 43190361 43989978 NC_060948.1 CM039056.1 99.99 True relocation, scaffold gap is present, inconsistency = 3280939 44198345 44522622 43990179 44314456 NC_060948.1 CM039056.1 100.0 True indel: stretch of mismatches 44522623 46627752 44314457 46419591 NC_060948.1 CM039056.1 100.0 True CONTIG CM039056.1 46419591 misassembled 61513672 62458740 946402 1305 NC_060948.1 JAKCWS010000074.1 99.99 True CONTIG JAKCWS010000074.1 950896 correct 46609398 46910224 300827 1 NC_060948.1 JAKCWS010000083.1 100.0 True CONTIG JAKCWS010000083.1 300827 correct 59437760 59735925 1 298166 NC_060948.1 JAKCWS010000084.1 100.0 True CONTIG JAKCWS010000084.1 298166 correct 41355572 41652932 297359 1 NC_060948.1 JAKCWS010000085.1 100.0 True CONTIG JAKCWS010000085.1 297359 correct 34251179 34486101 1 234918 NC_060948.1 JAKCWS010000086.1 100.0 True CONTIG JAKCWS010000086.1 234918 correct 36561681 36779015 217337 1 NC_060948.1 JAKCWS010000087.1 99.99 True indel: indel (<= 5bp) 36547924 36561572 231098 217450 NC_060948.1 JAKCWS010000087.1 100.0 True CONTIG JAKCWS010000087.1 231098 correct 28260321 28277057 16720 1 NC_060948.1 JAKCWS010000088.1 99.5 True relocation, inconsistency = -18765767 46893710 47026087 149094 16721 NC_060948.1 JAKCWS010000088.1 99.97 True CONTIG JAKCWS010000088.1 149094 misassembled 34832170 34966100 1 133931 NC_060948.1 JAKCWS010000089.1 100.0 True CONTIG JAKCWS010000089.1 133931 correct 57212711 57334336 317 121937 NC_060948.1 JAKCWS010000090.1 99.95 True CONTIG JAKCWS010000090.1 121937 correct 58065829 58170657 1 104829 NC_060948.1 JAKCWS010000091.1 100.0 True CONTIG JAKCWS010000091.1 104829 correct 58901780 58911672 1 9893 NC_060948.1 JAKCWS010000092.1 99.92 True relocation, inconsistency = -666200 58245473 58309546 9894 73967 NC_060948.1 JAKCWS010000092.1 99.93 True relocation, inconsistency = 845259 59154806 59175356 73968 94518 NC_060948.1 JAKCWS010000092.1 99.95 True CONTIG JAKCWS010000092.1 94518 misassembled 41637637 42019040 1 381404 NC_060948.1 JAKCWS010000075.1 100.0 True relocation, inconsistency = 5274302 47293343 47326763 381405 414825 NC_060948.1 JAKCWS010000075.1 99.86 True indel: stretch of mismatches 47326764 47662954 414826 751016 NC_060948.1 JAKCWS010000075.1 100.0 True CONTIG JAKCWS010000075.1 751016 misassembled 36372649 36384016 1 11368 NC_060948.1 JAKCWS010000093.1 99.87 True relocation, inconsistency = -6364698 30019319 30093421 11369 85483 NC_060948.1 JAKCWS010000093.1 99.92 True CONTIG JAKCWS010000093.1 85483 misassembled 57203833 57228216 24385 1 NC_060948.1 JAKCWS010000094.1 99.94 True relocation, inconsistency = -1773707 58917242 58977539 84689 24386 NC_060948.1 JAKCWS010000094.1 99.93 True CONTIG JAKCWS010000094.1 84689 misassembled 58994479 59078871 84393 1 NC_060948.1 JAKCWS010000095.1 100.0 True CONTIG JAKCWS010000095.1 84393 correct 37073096 37081211 1 8116 NC_060948.1 JAKCWS010000076.1 100.0 True indel: indel (> 5bp) 37081352 37720153 8234 647037 NC_060948.1 JAKCWS010000076.1 99.99 True CONTIG JAKCWS010000076.1 647037 correct 38913799 39349914 1 436116 NC_060948.1 JAKCWS010000077.1 100.0 True indel: stretch of mismatches 39349915 39525862 436117 612057 NC_060948.1 JAKCWS010000077.1 99.99 True CONTIG JAKCWS010000077.1 612057 correct 58350851 58922816 1 564845 NC_060948.1 JAKCWS010000078.1 98.75 True CONTIG JAKCWS010000078.1 564845 correct 30172197 30320592 148396 1 NC_060948.1 JAKCWS010000079.1 99.97 True relocation, inconsistency = -546455 30408130 30718651 458928 148397 NC_060948.1 JAKCWS010000079.1 99.99 True indel: stretch of mismatches 30400973 30408129 466085 458929 NC_060948.1 JAKCWS010000079.1 100.0 True indel: stretch of mismatches 30399816 30400972 467242 466086 NC_060948.1 JAKCWS010000079.1 100.0 True indel: stretch of mismatches 30315428 30399815 551629 467243 NC_060948.1 JAKCWS010000079.1 100.0 True CONTIG JAKCWS010000079.1 551629 misassembled 42555585 43092125 1 536541 NC_060948.1 JAKCWS010000080.1 100.0 True CONTIG JAKCWS010000080.1 536541 correct 36345925 36570259 224341 1 NC_060948.1 JAKCWS010000081.1 99.98 True indel: stretch of mismatches 36341230 36345924 229036 224342 NC_060948.1 JAKCWS010000081.1 99.95 True indel: stretch of mismatches 36212642 36341229 357624 229037 NC_060948.1 JAKCWS010000081.1 100.0 True CONTIG JAKCWS010000081.1 357624 correct 52424892 52727467 1 302576 NC_060948.1 JAKCWS010000082.1 100.0 True CONTIG JAKCWS010000082.1 302576 correct 89198994 89256590 57593 1 NC_060926.1 JAKCWS010000097.1 99.98 True fake: scaffold gap size wrong estimation (local) 88906787 89196711 348002 58094 NC_060926.1 JAKCWS010000097.1 99.94 True inversion 88870932 88913012 348003 390099 NC_060926.1 JAKCWS010000097.1 99.74 True CONTIG JAKCWS010000097.1 390099 misassembled 10291867 10297429 21 5583 NC_060938.1 JAKCWS010000098.1 98.07 True relocation, inconsistency = 39512 10336942 10343660 5584 12301 NC_060938.1 JAKCWS010000098.1 98.72 True relocation, inconsistency = 205950 10549837 10556772 12528 19457 NC_060938.1 JAKCWS010000098.1 98.59 True relocation, inconsistency = -162652 10394121 10397180 19458 22516 NC_060938.1 JAKCWS010000098.1 98.77 True relocation, inconsistency = 91044 10488225 10493916 22517 28202 NC_060938.1 JAKCWS010000098.1 98.78 True local misassembly 10487097 10494837 28203 35937 NC_060938.1 JAKCWS010000098.1 98.76 True relocation, inconsistency = -211705 10283801 10292881 36606 45688 NC_060938.1 JAKCWS010000098.1 98.72 True local misassembly 10294246 10297429 45689 48872 NC_060938.1 JAKCWS010000098.1 98.06 True relocation, inconsistency = 1459000 11756430 11761667 48873 54110 NC_060938.1 JAKCWS010000098.1 98.86 True relocation, inconsistency = -1211831 10549837 10556772 54111 61040 NC_060938.1 JAKCWS010000098.1 98.56 True relocation, inconsistency = 490386 11047159 11050228 61041 64109 NC_060938.1 JAKCWS010000098.1 98.71 True relocation, inconsistency = -500618 10549837 10556903 64336 71396 NC_060938.1 JAKCWS010000098.1 98.64 True relocation, inconsistency = -178678 10378226 10380795 71397 73965 NC_060938.1 JAKCWS010000098.1 98.88 True relocation, inconsistency = 13298 10394094 10397190 73966 77061 NC_060938.1 JAKCWS010000098.1 98.81 True relocation, inconsistency = 89680 10487097 10493916 77288 84101 NC_060938.1 JAKCWS010000098.1 98.71 True local misassembly 10496645 10505930 84102 93387 NC_060938.1 JAKCWS010000098.1 98.86 True relocation, inconsistency = 211326 10717257 10723543 93388 99674 NC_060938.1 JAKCWS010000098.1 98.83 True local misassembly 10716724 10723543 99675 106494 NC_060938.1 JAKCWS010000098.1 98.83 True local misassembly 10716724 10725440 106495 115211 NC_060938.1 JAKCWS010000098.1 98.8 True translocation 15606840 15609033 115212 117406 NC_060946.1 JAKCWS010000098.1 98.25 True translocation 10498578 10506192 117407 125021 NC_060938.1 JAKCWS010000098.1 98.55 True relocation, inconsistency = -275285 10230908 10243296 125022 137410 NC_060938.1 JAKCWS010000098.1 98.76 True relocation, inconsistency = 1701196 11944572 11952301 137490 145219 NC_060938.1 JAKCWS010000098.1 99.07 True relocation, inconsistency = -1455919 10496645 10503464 145482 152300 NC_060938.1 JAKCWS010000098.1 98.67 True local misassembly 10496645 10508477 152301 164133 NC_060938.1 JAKCWS010000098.1 98.65 True relocation, inconsistency = -269829 10238649 10241819 164134 167304 NC_060938.1 JAKCWS010000098.1 98.77 True local misassembly 10236364 10241819 167305 172760 NC_060938.1 JAKCWS010000098.1 98.81 True relocation, inconsistency = 254825 10496645 10508477 172761 184593 NC_060938.1 JAKCWS010000098.1 98.7 True relocation, inconsistency = -9548 10498930 10503479 184594 189143 NC_060938.1 JAKCWS010000098.1 98.71 True local misassembly 10496660 10503464 189144 195948 NC_060938.1 JAKCWS010000098.1 98.58 True local misassembly 10496645 10508477 195949 207781 NC_060938.1 JAKCWS010000098.1 98.61 True local misassembly 10501658 10508477 207782 214601 NC_060938.1 JAKCWS010000098.1 98.6 True relocation, inconsistency = -272557 10236364 10239106 215045 217787 NC_060938.1 JAKCWS010000098.1 98.77 True relocation, inconsistency = 257553 10496660 10508477 217788 229605 NC_060938.1 JAKCWS010000098.1 98.65 True relocation, inconsistency = -9548 10498930 10508477 229606 239153 NC_060938.1 JAKCWS010000098.1 98.61 True relocation, inconsistency = -269829 10238649 10240651 239154 241156 NC_060938.1 JAKCWS010000098.1 98.77 True local misassembly 10233832 10241819 241157 249144 NC_060938.1 JAKCWS010000098.1 98.81 True relocation, inconsistency = 254825 10496645 10508477 249145 260977 NC_060938.1 JAKCWS010000098.1 98.61 True relocation, inconsistency = -8184 10500737 10508477 261421 269161 NC_060938.1 JAKCWS010000098.1 98.51 True relocation, inconsistency = 1948237 12457158 12464546 269605 276993 NC_060938.1 JAKCWS010000098.1 98.87 True local misassembly 12465911 12475389 276994 286472 NC_060938.1 JAKCWS010000098.1 99.03 True relocation, inconsistency = -1980973 10494417 10508681 286473 300733 NC_060938.1 JAKCWS010000098.1 98.78 True local misassembly 10504590 10505397 300734 301541 NC_060938.1 JAKCWS010000098.1 98.84 True local misassembly 10498578 10508681 301542 311642 NC_060938.1 JAKCWS010000098.1 98.82 True relocation, inconsistency = 1949601 12458283 12466262 311643 319619 NC_060938.1 JAKCWS010000098.1 98.65 True relocation, inconsistency = -2173585 10292678 10299984 319620 326931 NC_060938.1 JAKCWS010000098.1 97.89 True relocation, inconsistency = -22495 10277665 10281988 327107 331432 NC_060938.1 JAKCWS010000098.1 97.54 True relocation, inconsistency = 753582 11035571 11040762 331433 336623 NC_060938.1 JAKCWS010000098.1 98.74 True relocation, inconsistency = -668044 10372719 10380467 336624 344370 NC_060938.1 JAKCWS010000098.1 98.63 True relocation, inconsistency = 654404 11034872 11040570 344371 350068 NC_060938.1 JAKCWS010000098.1 98.61 True relocation, inconsistency = -764491 10277665 10280248 351654 354235 NC_060938.1 JAKCWS010000098.1 97.34 True translocation 12887325 12893737 354236 360653 NC_060946.1 JAKCWS010000098.1 97.97 True translocation 11032843 11038963 361434 367553 NC_060938.1 JAKCWS010000098.1 98.6 True local misassembly 11034872 11036934 367554 369615 NC_060938.1 JAKCWS010000098.1 98.5 True local misassembly 11035571 11039389 369616 373433 NC_060938.1 JAKCWS010000098.1 98.71 True local misassembly 11033934 11040570 373434 380069 NC_060938.1 JAKCWS010000098.1 98.63 True relocation, inconsistency = -486638 10553933 10555570 380070 381707 NC_060938.1 JAKCWS010000098.1 98.47 True CONTIG JAKCWS010000098.1 381762 misassembled 3948535 4004212 1 55754 NC_060945.1 JAKCWS010000099.1 98.88 True relocation, inconsistency = -894592 3109621 3126012 55755 72098 NC_060945.1 JAKCWS010000099.1 98.59 True relocation, inconsistency = 447921 3574147 3618706 72312 117004 NC_060945.1 JAKCWS010000099.1 98.92 True indel: indel (<= 5bp) 3618936 3663493 117236 161905 NC_060945.1 JAKCWS010000099.1 99.02 True indel: indel (<= 5bp) 3663719 3718227 162129 216659 NC_060945.1 JAKCWS010000099.1 98.8 True translocation 3915293 4061289 216660 362229 NC_060939.1 JAKCWS010000099.1 99.05 True CONTIG JAKCWS010000099.1 362229 misassembled 22991570 23321065 1 329495 NC_060948.1 JAKCWS010000100.1 100.0 True CONTIG JAKCWS010000100.1 329495 correct 27761158 27762496 1 1341 NC_060944.1 JAKCWS010000101.1 99.51 True local misassembly 27759779 27769240 1342 10803 NC_060944.1 JAKCWS010000101.1 99.52 True relocation, inconsistency = 1323963 29093204 29099479 10804 17079 NC_060944.1 JAKCWS010000101.1 99.26 True relocation, inconsistency = -1171037 27928443 27929997 17080 18636 NC_060944.1 JAKCWS010000101.1 99.78 True local misassembly 27927281 27932118 18637 23476 NC_060944.1 JAKCWS010000101.1 99.72 True relocation, inconsistency = 169247 28101366 28108671 23477 30782 NC_060944.1 JAKCWS010000101.1 99.69 True local misassembly 28103234 28104084 30783 31633 NC_060944.1 JAKCWS010000101.1 99.69 True local misassembly 28101366 28108671 31634 38939 NC_060944.1 JAKCWS010000101.1 99.73 True local misassembly 28103234 28106803 38940 42509 NC_060944.1 JAKCWS010000101.1 99.73 True local misassembly 28101366 28108671 42510 49815 NC_060944.1 JAKCWS010000101.1 99.7 True relocation, inconsistency = 77500 28186172 28187022 49816 50666 NC_060944.1 JAKCWS010000101.1 99.7 True relocation, inconsistency = -85657 28101366 28108671 50667 57972 NC_060944.1 JAKCWS010000101.1 99.7 True local misassembly 28103234 28106803 57973 61542 NC_060944.1 JAKCWS010000101.1 99.73 True relocation, inconsistency = 72062 28178866 28188890 61543 71567 NC_060944.1 JAKCWS010000101.1 99.71 True local misassembly 28183453 28187022 71568 75137 NC_060944.1 JAKCWS010000101.1 99.71 True local misassembly 28181585 28188890 75138 82443 NC_060944.1 JAKCWS010000101.1 99.67 True relocation, inconsistency = -531880 27657324 27665167 82757 90599 NC_060944.1 JAKCWS010000101.1 99.52 True relocation, inconsistency = -8157 27657324 27666941 90913 100528 NC_060944.1 JAKCWS010000101.1 99.55 True local misassembly 27661503 27666941 100529 105966 NC_060944.1 JAKCWS010000101.1 99.55 True relocation, inconsistency = -8158 27659177 27666941 106360 114123 NC_060944.1 JAKCWS010000101.1 99.63 True local misassembly 27664222 27666149 114124 116050 NC_060944.1 JAKCWS010000101.1 99.56 True relocation, inconsistency = 1426262 29092412 29099479 116051 123118 NC_060944.1 JAKCWS010000101.1 99.39 True relocation, inconsistency = -1173756 27927281 27932118 124676 129515 NC_060944.1 JAKCWS010000101.1 99.72 True relocation, inconsistency = 169247 28101366 28108671 129516 136821 NC_060944.1 JAKCWS010000101.1 99.69 True local misassembly 28103234 28104084 136822 137672 NC_060944.1 JAKCWS010000101.1 99.7 True relocation, inconsistency = 77500 28181585 28188890 137673 144978 NC_060944.1 JAKCWS010000101.1 99.73 True local misassembly 28183453 28187022 144979 148548 NC_060944.1 JAKCWS010000101.1 99.7 True local misassembly 28181585 28188890 148549 155854 NC_060944.1 JAKCWS010000101.1 99.69 True relocation, inconsistency = -437737 27751542 27760172 156243 164873 NC_060944.1 JAKCWS010000101.1 99.71 True local misassembly 27760515 27762467 164874 166826 NC_060944.1 JAKCWS010000101.1 99.59 True local misassembly 27759749 27769240 166827 176317 NC_060944.1 JAKCWS010000101.1 99.54 True relocation, inconsistency = 413266 28182507 28188889 176318 182702 NC_060944.1 JAKCWS010000101.1 99.6 True relocation, inconsistency = 558256 28747146 28750716 182703 186272 NC_060944.1 JAKCWS010000101.1 99.53 True relocation, inconsistency = -649351 28101366 28108671 186273 193579 NC_060944.1 JAKCWS010000101.1 99.66 True local misassembly 28103234 28106803 193580 197149 NC_060944.1 JAKCWS010000101.1 99.75 True relocation, inconsistency = 74781 28181585 28184303 197150 199868 NC_060944.1 JAKCWS010000101.1 99.64 True relocation, inconsistency = -85656 28098648 28108671 199869 209893 NC_060944.1 JAKCWS010000101.1 99.68 True relocation, inconsistency = -506039 27602633 27606005 209894 213266 NC_060944.1 JAKCWS010000101.1 99.33 True relocation, inconsistency = 51318 27657324 27665167 213267 221110 NC_060944.1 JAKCWS010000101.1 99.58 True relocation, inconsistency = 163461 27831719 27836916 224201 229398 NC_060944.1 JAKCWS010000101.1 99.45 True relocation, inconsistency = -177740 27659177 27666941 229399 237162 NC_060944.1 JAKCWS010000101.1 99.59 True local misassembly 27661503 27664614 237163 240274 NC_060944.1 JAKCWS010000101.1 99.56 True local misassembly 27659177 27664724 240275 245821 NC_060944.1 JAKCWS010000101.1 99.48 True relocation, inconsistency = 166522 27831528 27834307 246103 248882 NC_060944.1 JAKCWS010000101.1 99.68 True relocation, inconsistency = 268141 28102560 28103369 248994 249803 NC_060944.1 JAKCWS010000101.1 100.0 True local misassembly 28103541 28106803 249804 253066 NC_060944.1 JAKCWS010000101.1 99.75 True relocation, inconsistency = 74781 28181585 28188447 253067 259929 NC_060944.1 JAKCWS010000101.1 99.75 True relocation, inconsistency = 553155 28747933 28750716 266260 269043 NC_060944.1 JAKCWS010000101.1 99.66 True relocation, inconsistency = -569132 28181585 28188890 269044 276349 NC_060944.1 JAKCWS010000101.1 99.63 True relocation, inconsistency = -219559 27969662 27977380 276680 284398 NC_060944.1 JAKCWS010000101.1 99.61 True relocation, inconsistency = -216139 27761247 27767780 284404 290937 NC_060944.1 JAKCWS010000101.1 99.62 True relocation, inconsistency = 61845 27829626 27839242 290938 300552 NC_060944.1 JAKCWS010000101.1 99.48 True local misassembly 27833805 27835063 300553 301811 NC_060944.1 JAKCWS010000101.1 99.43 True local misassembly 27829626 27839242 301812 311424 NC_060944.1 JAKCWS010000101.1 99.45 True local misassembly 27833805 27835188 311425 312808 NC_060944.1 JAKCWS010000101.1 99.48 True local misassembly 27829751 27838347 312809 321405 NC_060944.1 JAKCWS010000101.1 99.51 True CONTIG JAKCWS010000101.1 321405 misassembled 5518530 5539393 1 20843 NC_060945.1 JAKCWS010000102.1 99.06 True translocation 2127277 2162193 20844 55542 NC_060938.1 JAKCWS010000102.1 98.77 True translocation 9215267 9242645 55543 82973 NC_060937.1 JAKCWS010000102.1 98.25 True translocation 3108300 3154590 82974 129439 NC_060945.1 JAKCWS010000102.1 98.71 True translocation 5445981 5548946 129440 232392 NC_060946.1 JAKCWS010000102.1 99.62 True relocation, inconsistency = 44062 5593009 5629542 232393 268952 NC_060946.1 JAKCWS010000102.1 99.34 True CONTIG JAKCWS010000102.1 268952 misassembled 44350105 44358104 1 8003 NC_060932.1 JAKCWS010000103.1 99.24 True relocation, inconsistency = 32275 44390380 44394927 8004 12553 NC_060932.1 JAKCWS010000103.1 99.35 True local misassembly 44389830 44398024 12554 20752 NC_060932.1 JAKCWS010000103.1 99.38 True local misassembly 44392929 44394927 20753 22752 NC_060932.1 JAKCWS010000103.1 99.4 True local misassembly 44389830 44394927 22753 27850 NC_060932.1 JAKCWS010000103.1 99.4 True local misassembly 44389830 44394927 27851 32948 NC_060932.1 JAKCWS010000103.1 99.32 True local misassembly 44389830 44398024 32949 41148 NC_060932.1 JAKCWS010000103.1 99.34 True local misassembly 44392929 44394927 41149 43148 NC_060932.1 JAKCWS010000103.1 99.35 True local misassembly 44389830 44398024 43149 51347 NC_060932.1 JAKCWS010000103.1 99.35 True local misassembly 44392929 44394927 51348 53346 NC_060932.1 JAKCWS010000103.1 99.38 True local misassembly 44389830 44398024 53347 61545 NC_060932.1 JAKCWS010000103.1 99.39 True local misassembly 44392929 44394927 61546 63543 NC_060932.1 JAKCWS010000103.1 99.39 True local misassembly 44389830 44398024 63544 71762 NC_060932.1 JAKCWS010000103.1 99.1 True local misassembly 44392929 44394927 71763 73762 NC_060932.1 JAKCWS010000103.1 99.11 True local misassembly 44389830 44394927 73763 78859 NC_060932.1 JAKCWS010000103.1 99.35 True local misassembly 44389830 44398024 78860 87056 NC_060932.1 JAKCWS010000103.1 99.37 True local misassembly 44392930 44394927 87057 89053 NC_060932.1 JAKCWS010000103.1 99.35 True local misassembly 44389830 44398024 89054 97250 NC_060932.1 JAKCWS010000103.1 99.33 True local misassembly 44392930 44394927 97251 99247 NC_060932.1 JAKCWS010000103.1 99.29 True local misassembly 44389830 44396268 99248 105688 NC_060932.1 JAKCWS010000103.1 99.32 True relocation, inconsistency = -48757 44347512 44358104 105689 116287 NC_060932.1 JAKCWS010000103.1 99.31 True local misassembly 44353009 44356348 116288 119629 NC_060932.1 JAKCWS010000103.1 99.29 True local misassembly 44351252 44358104 119630 126487 NC_060932.1 JAKCWS010000103.1 99.24 True local misassembly 44353009 44353800 126488 127279 NC_060932.1 JAKCWS010000103.1 99.29 True local misassembly 44351252 44361845 127280 137879 NC_060932.1 JAKCWS010000103.1 99.31 True local misassembly 44355558 44357876 137880 140199 NC_060932.1 JAKCWS010000103.1 99.31 True relocation, inconsistency = 34823 44392700 44394927 140200 142428 NC_060932.1 JAKCWS010000103.1 99.31 True local misassembly 44389830 44398024 142429 150627 NC_060932.1 JAKCWS010000103.1 99.37 True relocation, inconsistency = -7645 44390380 44397478 150628 157727 NC_060932.1 JAKCWS010000103.1 99.33 True local misassembly 44390514 44392378 157728 159592 NC_060932.1 JAKCWS010000103.1 99.37 True local misassembly 44389830 44398024 159593 167791 NC_060932.1 JAKCWS010000103.1 99.38 True relocation, inconsistency = -7645 44390380 44394927 167792 172339 NC_060932.1 JAKCWS010000103.1 99.3 True local misassembly 44389830 44398024 172340 180538 NC_060932.1 JAKCWS010000103.1 99.32 True local misassembly 44392929 44397475 180539 185087 NC_060932.1 JAKCWS010000103.1 99.32 True relocation, inconsistency = -7646 44389830 44397749 185088 193009 NC_060932.1 JAKCWS010000103.1 99.41 True CONTIG JAKCWS010000103.1 193009 misassembled 53963660 53969389 4 5733 NC_060935.1 JAKCWS010000104.1 97.18 True relocation, inconsistency = -186122 53783268 53792097 5734 14570 NC_060935.1 JAKCWS010000104.1 97.65 True local misassembly 53785543 53793938 14811 23210 NC_060935.1 JAKCWS010000104.1 97.93 True relocation, inconsistency = -756984 53037291 53045875 23547 32131 NC_060935.1 JAKCWS010000104.1 97.88 True relocation, inconsistency = -1198888 51846988 51851673 32132 36817 NC_060935.1 JAKCWS010000104.1 97.86 True relocation, inconsistency = 2034910 53886584 53897422 36818 47656 NC_060935.1 JAKCWS010000104.1 97.36 True relocation, inconsistency = 157239 54054839 54061489 47834 54485 NC_060935.1 JAKCWS010000104.1 97.71 True relocation, inconsistency = -2412962 51648528 51657385 54486 63348 NC_060935.1 JAKCWS010000104.1 97.88 True relocation, inconsistency = -7647 51649739 51657385 63349 70998 NC_060935.1 JAKCWS010000104.1 97.98 True relocation, inconsistency = 647325 52304711 52308024 70999 74312 NC_060935.1 JAKCWS010000104.1 98.46 True relocation, inconsistency = 1706995 54015020 54021158 74313 80452 NC_060935.1 JAKCWS010000104.1 97.96 True relocation, inconsistency = 335687 54356846 54366180 80453 89782 NC_060935.1 JAKCWS010000104.1 97.74 True local misassembly 54368731 54375211 89783 96260 NC_060935.1 JAKCWS010000104.1 97.72 True relocation, inconsistency = -144469 54230866 54236814 96384 102331 NC_060935.1 JAKCWS010000104.1 97.59 True local misassembly 54230866 54236527 102332 107992 NC_060935.1 JAKCWS010000104.1 97.62 True local misassembly 54243326 54256013 107993 120685 NC_060935.1 JAKCWS010000104.1 98.02 True relocation, inconsistency = 98580 54354814 54367615 120906 133705 NC_060935.1 JAKCWS010000104.1 97.74 True relocation, inconsistency = -288091 54079525 54086554 133706 140735 NC_060935.1 JAKCWS010000104.1 98.13 True local misassembly 54083155 54086836 140736 144417 NC_060935.1 JAKCWS010000104.1 98.01 True relocation, inconsistency = -714183 53372654 53381869 144418 153634 NC_060935.1 JAKCWS010000104.1 97.97 True relocation, inconsistency = 690385 54072255 54076487 153635 157868 NC_060935.1 JAKCWS010000104.1 98.23 True relocation, inconsistency = -659793 53416695 53423401 157869 164575 NC_060935.1 JAKCWS010000104.1 98.02 True relocation, inconsistency = 359779 53783268 53790624 164663 172024 NC_060935.1 JAKCWS010000104.1 97.73 True local misassembly 53788076 53790624 172025 174574 NC_060935.1 JAKCWS010000104.1 97.84 True relocation, inconsistency = -310492 53480219 53487690 174661 182135 NC_060935.1 JAKCWS010000104.1 97.61 True relocation, inconsistency = 298598 53786289 53789977 182136 185826 NC_060935.1 JAKCWS010000104.1 97.63 True CONTIG JAKCWS010000104.1 185935 misassembled 103287303 103463183 175878 1 NC_060925.1 JAKCWS010000105.1 99.97 True CONTIG JAKCWS010000105.1 175878 correct 13973582 13979395 15 5813 NC_060937.1 JAKCWS010000106.1 97.6 True local misassembly 13973361 13975546 5814 7948 NC_060937.1 JAKCWS010000106.1 97.08 True local misassembly 13972525 13980217 7949 15631 NC_060937.1 JAKCWS010000106.1 97.54 True local misassembly 13974183 13978559 15632 19957 NC_060937.1 JAKCWS010000106.1 97.11 True local misassembly 13972525 13980303 19958 27726 NC_060937.1 JAKCWS010000106.1 97.81 True local misassembly 13974269 13976382 27727 29830 NC_060937.1 JAKCWS010000106.1 97.03 True local misassembly 13973361 13978559 29831 34978 NC_060937.1 JAKCWS010000106.1 97.03 True local misassembly 13972525 13980303 34979 42749 NC_060937.1 JAKCWS010000106.1 97.88 True local misassembly 13977291 13978559 42750 44018 NC_060937.1 JAKCWS010000106.1 98.02 True local misassembly 13972525 13980297 44019 51739 NC_060937.1 JAKCWS010000106.1 97.04 True local misassembly 13977285 13978559 51740 53014 NC_060937.1 JAKCWS010000106.1 97.18 True local misassembly 13972525 13980217 53015 60655 NC_060937.1 JAKCWS010000106.1 97.21 True local misassembly 13974183 13976128 60656 62593 NC_060937.1 JAKCWS010000106.1 97.6 True relocation, inconsistency = 1231701 15207830 15216880 62594 71642 NC_060937.1 JAKCWS010000106.1 97.82 True relocation, inconsistency = 84586 15301467 15302689 71643 72865 NC_060937.1 JAKCWS010000106.1 98.31 True relocation, inconsistency = -331310 14972843 14974982 74329 76468 NC_060937.1 JAKCWS010000106.1 98.16 True relocation, inconsistency = -1002480 13972503 13980303 76469 84217 NC_060937.1 JAKCWS010000106.1 97.4 True local misassembly 13977291 13979395 84218 86322 NC_060937.1 JAKCWS010000106.1 97.8 True local misassembly 13973361 13980303 86323 93214 NC_060937.1 JAKCWS010000106.1 97.08 True local misassembly 13977291 13978559 93215 94483 NC_060937.1 JAKCWS010000106.1 97.86 True local misassembly 13972525 13979116 94484 101019 NC_060937.1 JAKCWS010000106.1 97.28 True relocation, inconsistency = 1476897 15456014 15458764 101020 103770 NC_060937.1 JAKCWS010000106.1 98.66 True relocation, inconsistency = -1161657 14297108 14310179 103771 116796 NC_060937.1 JAKCWS010000106.1 97.37 True relocation, inconsistency = -336342 13973838 13975547 116797 118497 NC_060937.1 JAKCWS010000106.1 98.19 True local misassembly 13972526 13980217 118498 126178 NC_060937.1 JAKCWS010000106.1 97.75 True local misassembly 13974183 13980172 126179 132112 NC_060937.1 JAKCWS010000106.1 97.02 True relocation, inconsistency = -7081 13973361 13975546 132382 134516 NC_060937.1 JAKCWS010000106.1 97.31 True local misassembly 13972525 13980186 134517 142169 NC_060937.1 JAKCWS010000106.1 97.97 True relocation, inconsistency = 929552 14909739 14919070 142170 151457 NC_060937.1 JAKCWS010000106.1 97.34 True CONTIG JAKCWS010000106.1 151625 misassembled 25331233 25338380 7142 1 NC_060941.1 JAKCWS010000107.1 99.51 True relocation, inconsistency = 284900 25043003 25046332 10472 7143 NC_060941.1 JAKCWS010000107.1 99.92 True relocation, inconsistency = 551810 24469617 24474955 32049 26710 NC_060941.1 JAKCWS010000107.1 98.8 True relocation, inconsistency = -652097 25119203 25121713 34560 32050 NC_060941.1 JAKCWS010000107.1 99.76 True local misassembly 25116935 25121514 39544 34964 NC_060941.1 JAKCWS010000107.1 99.8 True relocation, inconsistency = 523493 24588794 24593441 44192 39545 NC_060941.1 JAKCWS010000107.1 99.68 True relocation, inconsistency = -336157 24888817 24924950 80489 44193 NC_060941.1 JAKCWS010000107.1 99.33 True local misassembly 24824548 24894246 150188 80490 NC_060941.1 JAKCWS010000107.1 99.87 True CONTIG JAKCWS010000107.1 150188 misassembled 44351509 44356348 1 4839 NC_060932.1 JAKCWS010000108.1 98.94 True local misassembly 44351252 44358104 4840 11694 NC_060932.1 JAKCWS010000108.1 99.37 True local misassembly 44353009 44356348 11695 15035 NC_060932.1 JAKCWS010000108.1 99.37 True local misassembly 44351252 44358104 15036 21890 NC_060932.1 JAKCWS010000108.1 99.34 True local misassembly 44355558 44356348 21891 22682 NC_060932.1 JAKCWS010000108.1 99.36 True local misassembly 44351252 44359839 22683 31273 NC_060932.1 JAKCWS010000108.1 99.35 True relocation, inconsistency = 31082 44390922 44394913 31274 35266 NC_060932.1 JAKCWS010000108.1 99.27 True local misassembly 44391172 44392378 35267 36473 NC_060932.1 JAKCWS010000108.1 99.27 True local misassembly 44389830 44394927 36474 41571 NC_060932.1 JAKCWS010000108.1 99.35 True local misassembly 44389830 44399217 41572 50962 NC_060932.1 JAKCWS010000108.1 99.31 True relocation, inconsistency = -8838 44390380 44394927 50963 55510 NC_060932.1 JAKCWS010000108.1 99.37 True local misassembly 44389830 44398024 55511 63707 NC_060932.1 JAKCWS010000108.1 99.35 True local misassembly 44392929 44394927 63708 65706 NC_060932.1 JAKCWS010000108.1 99.34 True local misassembly 44389830 44398024 65707 73903 NC_060932.1 JAKCWS010000108.1 99.32 True local misassembly 44392929 44394927 73904 75902 NC_060932.1 JAKCWS010000108.1 99.33 True local misassembly 44389830 44398024 75903 84099 NC_060932.1 JAKCWS010000108.1 99.3 True local misassembly 44392929 44394927 84100 86098 NC_060932.1 JAKCWS010000108.1 99.32 True local misassembly 44389830 44398024 86099 94295 NC_060932.1 JAKCWS010000108.1 99.28 True local misassembly 44392929 44398024 94296 99395 NC_060932.1 JAKCWS010000108.1 99.32 True relocation, inconsistency = -40082 44358735 44361813 100188 103269 NC_060932.1 JAKCWS010000108.1 99.33 True relocation, inconsistency = 27178 44388992 44398024 103270 112305 NC_060932.1 JAKCWS010000108.1 99.26 True local misassembly 44392929 44394927 112306 114304 NC_060932.1 JAKCWS010000108.1 99.29 True local misassembly 44389830 44394927 114305 119403 NC_060932.1 JAKCWS010000108.1 99.37 True local misassembly 44389830 44398024 119404 127602 NC_060932.1 JAKCWS010000108.1 99.34 True local misassembly 44392929 44394927 127603 129601 NC_060932.1 JAKCWS010000108.1 99.37 True local misassembly 44389830 44398024 129602 137775 NC_060932.1 JAKCWS010000108.1 99.11 True local misassembly 44392929 44398010 137776 142863 NC_060932.1 JAKCWS010000108.1 98.94 True relocation, inconsistency = 288471 44686482 44689928 142864 146331 NC_060932.1 JAKCWS010000108.1 98.84 True CONTIG JAKCWS010000108.1 148781 misassembled 91560494 91561340 19 865 NC_060926.1 JAKCWS010000109.1 98.35 True local misassembly 91562053 91562753 1624 2324 NC_060926.1 JAKCWS010000109.1 97.57 True indel: indel (> 5bp) 91562806 91563972 2325 3491 NC_060926.1 JAKCWS010000109.1 97.94 True local misassembly 91564935 91567324 4288 6665 NC_060926.1 JAKCWS010000109.1 97.16 True local misassembly 91567988 91568628 7309 7949 NC_060926.1 JAKCWS010000109.1 98.13 True local misassembly 91572429 91573656 11293 12521 NC_060926.1 JAKCWS010000109.1 96.26 True relocation, inconsistency = 409671 91160320 91162218 14959 13061 NC_060926.1 JAKCWS010000109.1 98.42 True indel: indel (<= 5bp) 91159656 91160314 15618 14960 NC_060926.1 JAKCWS010000109.1 98.18 True relocation, inconsistency = -114641 91272751 91274238 17164 15677 NC_060926.1 JAKCWS010000109.1 97.98 True local misassembly 91276868 91278816 19461 17513 NC_060926.1 JAKCWS010000109.1 97.64 True indel: indel (> 5bp) 91275699 91276867 20640 19472 NC_060926.1 JAKCWS010000109.1 98.2 True indel: indel (> 5bp) 91274251 91275325 22061 20987 NC_060926.1 JAKCWS010000109.1 97.58 True fake: not a misassembly (possible transposable element) 91151134 91152513 23540 22161 NC_060926.1 JAKCWS010000109.1 97.25 True fake: not a misassembly (possible transposable element) 91276873 91278623 25653 23903 NC_060926.1 JAKCWS010000109.1 98.4 True indel: indel (<= 5bp) 91275699 91276867 26822 25654 NC_060926.1 JAKCWS010000109.1 97.78 True indel: indel (> 5bp) 91274272 91275698 28272 26846 NC_060926.1 JAKCWS010000109.1 98.04 True local misassembly 91266367 91267677 29583 28273 NC_060926.1 JAKCWS010000109.1 97.86 True local misassembly 91258324 91259508 30768 29584 NC_060926.1 JAKCWS010000109.1 98.57 True local misassembly 91250510 91251759 32067 30818 NC_060926.1 JAKCWS010000109.1 98.64 True local misassembly 91249336 91249838 33231 32729 NC_060926.1 JAKCWS010000109.1 98.01 True indel: indel (> 5bp) 91247909 91249335 34681 33255 NC_060926.1 JAKCWS010000109.1 98.32 True indel: indel (<= 5bp) 91246597 91247907 35992 34682 NC_060926.1 JAKCWS010000109.1 98.32 True local misassembly 91251760 91252944 37177 35993 NC_060926.1 JAKCWS010000109.1 98.73 True indel: indel (> 5bp) 91250510 91251759 38476 37227 NC_060926.1 JAKCWS010000109.1 98.48 True local misassembly 91249336 91249838 39640 39138 NC_060926.1 JAKCWS010000109.1 98.01 True indel: indel (> 5bp) 91247909 91249335 41090 39664 NC_060926.1 JAKCWS010000109.1 98.25 True indel: indel (<= 5bp) 91246597 91247907 42401 41091 NC_060926.1 JAKCWS010000109.1 98.25 True local misassembly 91251760 91252944 43586 42402 NC_060926.1 JAKCWS010000109.1 98.82 True indel: indel (> 5bp) 91250510 91251759 44885 43636 NC_060926.1 JAKCWS010000109.1 98.4 True local misassembly 91249336 91249838 46049 45547 NC_060926.1 JAKCWS010000109.1 98.01 True indel: indel (> 5bp) 91247909 91249335 47499 46073 NC_060926.1 JAKCWS010000109.1 98.32 True indel: indel (<= 5bp) 91246597 91247907 48810 47500 NC_060926.1 JAKCWS010000109.1 98.32 True local misassembly 91251760 91252944 49995 48811 NC_060926.1 JAKCWS010000109.1 98.73 True indel: indel (> 5bp) 91250510 91251759 51294 50045 NC_060926.1 JAKCWS010000109.1 98.48 True local misassembly 91249336 91249838 52458 51956 NC_060926.1 JAKCWS010000109.1 98.01 True indel: indel (> 5bp) 91247909 91249335 53908 52482 NC_060926.1 JAKCWS010000109.1 98.25 True indel: indel (<= 5bp) 91246597 91247907 55219 53909 NC_060926.1 JAKCWS010000109.1 98.25 True local misassembly 91238609 91239789 56404 55224 NC_060926.1 JAKCWS010000109.1 98.98 True indel: indel (> 5bp) 91237359 91238608 57703 56454 NC_060926.1 JAKCWS010000109.1 98.08 True local misassembly 91236185 91236687 58867 58365 NC_060926.1 JAKCWS010000109.1 98.21 True indel: indel (> 5bp) 91234758 91236184 60317 58891 NC_060926.1 JAKCWS010000109.1 98.39 True indel: indel (<= 5bp) 91233446 91234756 61628 60318 NC_060926.1 JAKCWS010000109.1 98.25 True local misassembly 91231996 91233180 62813 61629 NC_060926.1 JAKCWS010000109.1 98.23 True indel: indel (> 5bp) 91231090 91231995 63768 62863 NC_060926.1 JAKCWS010000109.1 98.45 True local misassembly 91223057 91223559 65253 64751 NC_060926.1 JAKCWS010000109.1 98.01 True indel: indel (> 5bp) 91221630 91223056 66703 65277 NC_060926.1 JAKCWS010000109.1 98.39 True indel: indel (<= 5bp) 91220318 91221628 68014 66704 NC_060926.1 JAKCWS010000109.1 98.25 True local misassembly 91212330 91213510 69199 68019 NC_060926.1 JAKCWS010000109.1 99.07 True indel: indel (> 5bp) 91211080 91212329 70498 69249 NC_060926.1 JAKCWS010000109.1 98.24 True local misassembly 91209906 91210408 71662 71160 NC_060926.1 JAKCWS010000109.1 98.41 True indel: indel (> 5bp) 91208479 91209905 73112 71686 NC_060926.1 JAKCWS010000109.1 98.39 True indel: indel (<= 5bp) 91207217 91208477 74373 73113 NC_060926.1 JAKCWS010000109.1 98.41 True local misassembly 91199038 91200459 75795 74374 NC_060926.1 JAKCWS010000109.1 98.87 True indel: indel (<= 5bp) 91196897 91199037 77940 75800 NC_060926.1 JAKCWS010000109.1 98.55 True indel: indel (> 5bp) 91195743 91196824 79022 77941 NC_060926.1 JAKCWS010000109.1 98.8 True indel: indel (> 5bp) 91194607 91195732 80148 79023 NC_060926.1 JAKCWS010000109.1 97.87 True local misassembly 91199167 91200419 81785 80533 NC_060926.1 JAKCWS010000109.1 98.08 True indel: indel (> 5bp) 91196897 91199166 84078 81809 NC_060926.1 JAKCWS010000109.1 98.46 True local misassembly 91197976 91203390 89493 84079 NC_060926.1 JAKCWS010000109.1 98.58 True indel: indel (<= 5bp) 91196985 91197975 90489 89499 NC_060926.1 JAKCWS010000109.1 98.49 True relocation, inconsistency = 149837 91042442 91047130 95195 90507 NC_060926.1 JAKCWS010000109.1 99.17 True indel: indel (<= 5bp) 91039879 91042363 97756 95272 NC_060926.1 JAKCWS010000109.1 98.83 True relocation, inconsistency = -230153 91243806 91269970 123667 97818 NC_060926.1 JAKCWS010000109.1 95.38 True relocation, inconsistency = -123792 91365105 91367597 126174 123668 NC_060926.1 JAKCWS010000109.1 97.2 True relocation, inconsistency = 207448 91156500 91157656 127356 126175 NC_060926.1 JAKCWS010000109.1 96.27 True relocation, inconsistency = 41026 91114183 91114794 128647 128036 NC_060926.1 JAKCWS010000109.1 98.37 True indel: indel (<= 5bp) 91112577 91114182 130258 128653 NC_060926.1 JAKCWS010000109.1 97.14 True local misassembly 91111509 91112427 131177 130259 NC_060926.1 JAKCWS010000109.1 97.17 True local misassembly 91110836 91111410 131752 131178 NC_060926.1 JAKCWS010000109.1 98.26 True local misassembly 91108712 91110610 133651 131753 NC_060926.1 JAKCWS010000109.1 98.31 True local misassembly 91111108 91112428 135713 134393 NC_060926.1 JAKCWS010000109.1 97.43 True local misassembly 91108064 91110604 138780 136234 NC_060926.1 JAKCWS010000109.1 97.42 True local misassembly 91106455 91107587 140067 138935 NC_060926.1 JAKCWS010000109.1 97.35 True local misassembly 91098660 91101210 143306 140756 NC_060926.1 JAKCWS010000109.1 96.31 True local misassembly 91101784 91102916 144519 143387 NC_060926.1 JAKCWS010000109.1 97.35 True local misassembly 91099160 91101210 147126 145038 NC_060926.1 JAKCWS010000109.1 95.84 True CONTIG JAKCWS010000109.1 147141 misassembled 5549267 5562183 12885 1 NC_060946.1 JAKCWS010000110.1 98.74 True indel: indel (> 5bp) 5532711 5548979 29388 13118 NC_060946.1 JAKCWS010000110.1 98.77 True indel: indel (> 5bp) 5424486 5532591 137560 29524 NC_060946.1 JAKCWS010000110.1 99.23 True CONTIG JAKCWS010000110.1 137560 correct 44392929 44395823 2895 1 NC_060932.1 JAKCWS010000111.1 99.4 True local misassembly 44389830 44398024 11091 2896 NC_060932.1 JAKCWS010000111.1 99.35 True local misassembly 44392929 44394927 13090 11092 NC_060932.1 JAKCWS010000111.1 99.4 True local misassembly 44389830 44398024 21289 13091 NC_060932.1 JAKCWS010000111.1 99.4 True local misassembly 44392929 44394927 23287 21290 NC_060932.1 JAKCWS010000111.1 99.34 True local misassembly 44389830 44398024 31485 23288 NC_060932.1 JAKCWS010000111.1 99.34 True local misassembly 44392929 44394927 33484 31486 NC_060932.1 JAKCWS010000111.1 99.35 True local misassembly 44392929 44398024 38583 33485 NC_060932.1 JAKCWS010000111.1 99.39 True local misassembly 44389830 44398024 46783 38584 NC_060932.1 JAKCWS010000111.1 99.39 True local misassembly 44390380 44394927 50995 46784 NC_060932.1 JAKCWS010000111.1 95.1 True relocation, inconsistency = 32275 44351252 44358104 57853 50996 NC_060932.1 JAKCWS010000111.1 99.29 True local misassembly 44353009 44356348 61193 57854 NC_060932.1 JAKCWS010000111.1 99.34 True local misassembly 44353009 44358104 66292 61194 NC_060932.1 JAKCWS010000111.1 99.3 True local misassembly 44347512 44358104 76890 66293 NC_060932.1 JAKCWS010000111.1 99.23 True local misassembly 44353009 44353800 77682 76891 NC_060932.1 JAKCWS010000111.1 99.22 True local misassembly 44347512 44358104 88280 77683 NC_060932.1 JAKCWS010000111.1 99.22 True local misassembly 44353009 44353800 89072 88281 NC_060932.1 JAKCWS010000111.1 99.27 True local misassembly 44355558 44358104 91621 89073 NC_060932.1 JAKCWS010000111.1 99.4 True local misassembly 44347512 44358104 102222 91622 NC_060932.1 JAKCWS010000111.1 99.32 True local misassembly 44342978 44350058 109306 102223 NC_060932.1 JAKCWS010000111.1 99.22 True relocation, inconsistency = -55047 44389830 44398024 117504 109307 NC_060932.1 JAKCWS010000111.1 99.34 True relocation, inconsistency = 105886 44281995 44283943 119454 117505 NC_060932.1 JAKCWS010000111.1 97.7 True relocation, inconsistency = -116080 44389830 44398024 127702 119505 NC_060932.1 JAKCWS010000111.1 99.38 True local misassembly 44392929 44394927 129701 127703 NC_060932.1 JAKCWS010000111.1 99.37 True local misassembly 44390749 44398024 136982 129702 NC_060932.1 JAKCWS010000111.1 99.33 True CONTIG JAKCWS010000111.1 136982 misassembled 49457307 49461995 4693 1 NC_060929.1 JAKCWS010000112.1 97.85 True local misassembly 49456085 49462738 11351 4694 NC_060929.1 JAKCWS010000112.1 97.81 True local misassembly 49457307 49461518 15565 11352 NC_060929.1 JAKCWS010000112.1 97.69 True local misassembly 49456085 49462738 22223 15566 NC_060929.1 JAKCWS010000112.1 97.73 True local misassembly 49456085 49460161 26300 22224 NC_060929.1 JAKCWS010000112.1 97.81 True local misassembly 49457307 49462107 31533 26729 NC_060929.1 JAKCWS010000112.1 97.86 True local misassembly 49456085 49462738 38191 31534 NC_060929.1 JAKCWS010000112.1 97.75 True local misassembly 49457307 49461518 42405 38192 NC_060929.1 JAKCWS010000112.1 97.78 True local misassembly 49456087 49462738 49057 42406 NC_060929.1 JAKCWS010000112.1 97.79 True local misassembly 49457307 49461516 53261 49058 NC_060929.1 JAKCWS010000112.1 97.63 True local misassembly 49456085 49462738 59919 53262 NC_060929.1 JAKCWS010000112.1 97.79 True local misassembly 49457307 49462107 65152 60348 NC_060929.1 JAKCWS010000112.1 98.04 True local misassembly 49456085 49462738 71810 65153 NC_060929.1 JAKCWS010000112.1 97.78 True local misassembly 49456855 49461518 76476 71811 NC_060929.1 JAKCWS010000112.1 97.74 True relocation, inconsistency = 16982 49438174 49439871 78175 76478 NC_060929.1 JAKCWS010000112.1 98.06 True indel: stretch of mismatches 49437032 49437982 79317 78367 NC_060929.1 JAKCWS010000112.1 98.95 True indel: stretch of mismatches 49436296 49436975 80053 79374 NC_060929.1 JAKCWS010000112.1 96.84 True relocation, inconsistency = -25812 49457307 49462107 84858 80054 NC_060929.1 JAKCWS010000112.1 97.88 True local misassembly 49456089 49462738 91508 84859 NC_060929.1 JAKCWS010000112.1 97.72 True fake: not a misassembly (possible transposable element) 47097846 47098448 92241 91639 NC_060929.1 JAKCWS010000112.1 97.84 True fake: not a misassembly (possible transposable element) 49443781 49447506 97365 93640 NC_060929.1 JAKCWS010000112.1 98.01 True relocation, inconsistency = -23097 49463911 49466174 100332 98069 NC_060929.1 JAKCWS010000112.1 97.7 True local misassembly 49459162 49460750 102364 100776 NC_060929.1 JAKCWS010000112.1 97.86 True relocation, inconsistency = 165782 49288198 49288824 107546 106920 NC_060929.1 JAKCWS010000112.1 98.56 True relocation, inconsistency = -129771 49415111 49416261 110405 109254 NC_060929.1 JAKCWS010000112.1 97.05 True relocation, inconsistency = -33631 49442450 49443775 116698 115372 NC_060929.1 JAKCWS010000112.1 97.36 True relocation, inconsistency = 88998 49351534 49352732 118617 117418 NC_060929.1 JAKCWS010000112.1 97.0 True relocation, inconsistency = -44498 49394551 49396029 120098 118620 NC_060929.1 JAKCWS010000112.1 97.97 True relocation, inconsistency = -49258 49435042 49438682 128867 125225 NC_060929.1 JAKCWS010000112.1 97.48 True relocation, inconsistency = -17662 49450672 49452260 130901 129311 NC_060929.1 JAKCWS010000112.1 98.05 True local misassembly 49447394 49449307 134174 132261 NC_060929.1 JAKCWS010000112.1 97.7 True relocation, inconsistency = 136219 49309417 49311174 135932 134175 NC_060929.1 JAKCWS010000112.1 96.63 True CONTIG JAKCWS010000112.1 135932 misassembled 29375765 29382961 7452 250 NC_060943.1 JAKCWS010000113.1 96.46 True local misassembly 29375944 29379500 11013 7453 NC_060943.1 JAKCWS010000113.1 96.34 True relocation, inconsistency = -199371 29568038 29575314 18290 11014 NC_060943.1 JAKCWS010000113.1 96.12 True local misassembly 29569707 29570417 19001 18291 NC_060943.1 JAKCWS010000113.1 96.26 True local misassembly 29568016 29575146 26128 19002 NC_060943.1 JAKCWS010000113.1 96.03 True local misassembly 29572767 29573795 27157 26129 NC_060943.1 JAKCWS010000113.1 96.07 True local misassembly 29567996 29575146 34304 27158 NC_060943.1 JAKCWS010000113.1 96.18 True local misassembly 29565676 29570375 39004 34305 NC_060943.1 JAKCWS010000113.1 96.42 True relocation, inconsistency = -11560 29568016 29577085 48216 39155 NC_060943.1 JAKCWS010000113.1 95.94 True local misassembly 29570215 29571415 49417 48217 NC_060943.1 JAKCWS010000113.1 96.14 True local misassembly 29571235 29575314 53497 49418 NC_060943.1 JAKCWS010000113.1 96.51 True local misassembly 29568022 29575314 60790 53498 NC_060943.1 JAKCWS010000113.1 96.23 True local misassembly 29572767 29573461 61485 60791 NC_060943.1 JAKCWS010000113.1 96.07 True local misassembly 29569418 29575146 67214 61486 NC_060943.1 JAKCWS010000113.1 96.26 True local misassembly 29565676 29569882 72315 68109 NC_060943.1 JAKCWS010000113.1 96.48 True relocation, inconsistency = -11560 29569391 29577083 80156 72468 NC_060943.1 JAKCWS010000113.1 96.0 True relocation, inconsistency = 1270457 28294032 28298933 85058 80157 NC_060943.1 JAKCWS010000113.1 97.41 True relocation, inconsistency = -1283037 29570649 29577068 91478 85059 NC_060943.1 JAKCWS010000113.1 96.37 True relocation, inconsistency = 1350306 28218662 28220126 93159 91695 NC_060943.1 JAKCWS010000113.1 98.48 True relocation, inconsistency = 952430 27259542 27266231 99848 93160 NC_060943.1 JAKCWS010000113.1 97.06 True relocation, inconsistency = 1284437 25973321 25975104 101631 99849 NC_060943.1 JAKCWS010000113.1 95.99 True relocation, inconsistency = -2370415 28337080 28341890 108290 103477 NC_060943.1 JAKCWS010000113.1 97.2 True relocation, inconsistency = 1076122 27253935 27260957 115313 108291 NC_060943.1 JAKCWS010000113.1 97.28 True relocation, inconsistency = -2320755 29571160 29574689 118843 115314 NC_060943.1 JAKCWS010000113.1 96.39 True relocation, inconsistency = 146172 29420406 29424987 123425 118844 NC_060943.1 JAKCWS010000113.1 96.16 True relocation, inconsistency = 1379540 28037203 28040865 127088 123426 NC_060943.1 JAKCWS010000113.1 97.75 True relocation, inconsistency = -765806 28796086 28803008 134018 127089 NC_060943.1 JAKCWS010000113.1 96.96 True CONTIG JAKCWS010000113.1 134062 misassembled 5871433 6001735 130363 1 NC_060938.1 JAKCWS010000114.1 99.84 True CONTIG JAKCWS010000114.1 130363 correct 4444278 4498227 54025 1 NC_060939.1 JAKCWS010000115.1 98.88 True local misassembly 4399357 4445257 100478 54593 NC_060939.1 JAKCWS010000115.1 99.16 True local misassembly 4376200 4400328 125169 101067 NC_060939.1 JAKCWS010000115.1 99.36 True CONTIG JAKCWS010000115.1 125172 correct 9219891 9260468 1 40547 NC_060937.1 JAKCWS010000116.1 99.53 True translocation 4775371 4776671 40691 41987 NC_060945.1 JAKCWS010000116.1 95.97 True indel: indel (<= 5bp) 4776799 4803142 42120 68540 NC_060945.1 JAKCWS010000116.1 98.72 True translocation 9244245 9260468 68656 84878 NC_060937.1 JAKCWS010000116.1 99.34 True translocation 4331269 4332817 84879 86328 NC_060945.1 JAKCWS010000116.1 98.0 True indel: indel (<= 5bp) 4332949 4359292 86461 112877 NC_060945.1 JAKCWS010000116.1 98.71 True indel: indel (> 5bp) 4359424 4369034 112993 122608 NC_060945.1 JAKCWS010000116.1 99.27 True CONTIG JAKCWS010000116.1 122608 misassembled 23771896 23892187 62 120030 NC_060941.1 JAKCWS010000117.1 98.47 True CONTIG JAKCWS010000117.1 120030 correct 3173450 3188190 1 14596 NC_060939.1 JAKCWS010000118.1 98.31 True indel: indel (> 5bp) 3188322 3204132 14716 30543 NC_060939.1 JAKCWS010000118.1 99.2 True translocation 3127090 3170836 30544 74442 NC_060945.1 JAKCWS010000118.1 99.0 True indel: indel (<= 5bp) 3171066 3210146 74674 113916 NC_060945.1 JAKCWS010000118.1 98.94 True CONTIG JAKCWS010000118.1 113916 misassembled 4093114 4103088 9974 1 NC_060945.1 JAKCWS010000119.1 99.29 True indel: indel (> 5bp) 4066639 4092982 36507 10090 NC_060945.1 JAKCWS010000119.1 98.7 True indel: indel (<= 5bp) 4065201 4066507 37946 36638 NC_060945.1 JAKCWS010000119.1 95.55 True local misassembly 4048729 4064958 54301 38086 NC_060945.1 JAKCWS010000119.1 99.24 True indel: indel (> 5bp) 4022254 4048597 80836 54417 NC_060945.1 JAKCWS010000119.1 98.76 True indel: indel (<= 5bp) 4020816 4022122 82274 80965 NC_060945.1 JAKCWS010000119.1 95.48 True local misassembly 4004344 4020573 98636 82414 NC_060945.1 JAKCWS010000119.1 99.2 True indel: indel (> 5bp) 3990104 4004212 112897 98752 NC_060945.1 JAKCWS010000119.1 99.21 True CONTIG JAKCWS010000119.1 112897 correct 4199825 4203402 3673 55 NC_060945.1 JAKCWS010000120.1 96.72 True local misassembly 4181884 4198902 21541 4589 NC_060945.1 JAKCWS010000120.1 97.8 True indel: indel (> 5bp) 4155409 4181752 48093 21657 NC_060945.1 JAKCWS010000120.1 98.63 True translocation 5637789 5638353 49512 48956 NC_060946.1 JAKCWS010000120.1 96.99 True indel: indel (> 5bp) 5621399 5637591 65896 49659 NC_060946.1 JAKCWS010000120.1 99.11 True indel: indel (> 5bp) 5619909 5621263 67372 66012 NC_060946.1 JAKCWS010000120.1 97.94 True translocation 4332949 4357927 92351 67373 NC_060945.1 JAKCWS010000120.1 98.5 True indel: indel (<= 5bp) 4315039 4332817 110162 92484 NC_060945.1 JAKCWS010000120.1 98.51 True indel: indel (> 5bp) 4313098 4314907 112079 110278 NC_060945.1 JAKCWS010000120.1 98.9 True CONTIG JAKCWS010000120.1 112134 misassembled 58349856 58418193 68340 1 NC_060930.1 JAKCWS010000121.1 98.61 True local misassembly 58306250 58347644 109726 68341 NC_060930.1 JAKCWS010000121.1 98.0 True CONTIG JAKCWS010000121.1 109734 correct 5529955 5554781 24865 1 NC_060945.1 JAKCWS010000122.1 98.93 True indel: indel (> 5bp) 5445782 5529740 109130 25106 NC_060945.1 JAKCWS010000122.1 98.99 True CONTIG JAKCWS010000122.1 109130 correct 2674770 2693029 1 18257 NC_060938.1 JAKCWS010000123.1 99.33 True indel: indel (> 5bp) 2693330 2737301 18494 62407 NC_060938.1 JAKCWS010000123.1 99.22 True indel: indel (> 5bp) 2737602 2781468 62671 106582 NC_060938.1 JAKCWS010000123.1 99.2 True translocation 5574474 5575908 106583 108034 NC_060945.1 JAKCWS010000123.1 98.28 True CONTIG JAKCWS010000123.1 108034 misassembled 58322105 58425803 1 103674 NC_060930.1 JAKCWS010000124.1 98.42 True CONTIG JAKCWS010000124.1 103674 correct 9207483 9208265 785 1 NC_060937.1 JAKCWS010000125.1 98.93 True translocation 4698648 4707012 9178 786 NC_060939.1 JAKCWS010000125.1 99.11 True local misassembly 4683453 4698330 24384 9595 NC_060939.1 JAKCWS010000125.1 98.79 True relocation, inconsistency = 44950 4559923 4638502 102933 24385 NC_060939.1 JAKCWS010000125.1 98.98 True CONTIG JAKCWS010000125.1 102933 misassembled 49433663 49434708 1225 180 NC_060929.1 JAKCWS010000126.1 98.28 True local misassembly 49427306 49428773 3164 1698 NC_060929.1 JAKCWS010000126.1 97.48 True fake: not a misassembly (possible transposable element) 49349312 49350465 4729 3576 NC_060929.1 JAKCWS010000126.1 97.92 True fake: not a misassembly (possible transposable element) 49424857 49425423 5611 5045 NC_060929.1 JAKCWS010000126.1 98.06 True local misassembly 49422369 49424149 7760 5980 NC_060929.1 JAKCWS010000126.1 98.43 True indel: indel (<= 5bp) 49421844 49422368 8286 7762 NC_060929.1 JAKCWS010000126.1 97.33 True relocation, inconsistency = -91730 49511479 49512351 10381 9509 NC_060929.1 JAKCWS010000126.1 97.94 True relocation, inconsistency = -24809 49530110 49532922 16558 13747 NC_060929.1 JAKCWS010000126.1 97.72 True relocation, inconsistency = 41796 49486028 49487554 18842 17318 NC_060929.1 JAKCWS010000126.1 97.64 True relocation, inconsistency = 141990 49335880 49340206 26998 22674 NC_060929.1 JAKCWS010000126.1 98.1 True relocation, inconsistency = -81867 49415030 49417413 29716 27332 NC_060929.1 JAKCWS010000126.1 97.95 True fake: not a misassembly (possible transposable element) 49444968 49446225 33068 31811 NC_060929.1 JAKCWS010000126.1 98.65 True fake: not a misassembly (possible transposable element) 49415052 49417131 35470 33390 NC_060929.1 JAKCWS010000126.1 97.74 True fake: not a misassembly (possible transposable element) 49438902 49439463 39134 38573 NC_060929.1 JAKCWS010000126.1 98.75 True fake: not a misassembly (possible transposable element) 49413038 49415094 41562 39504 NC_060929.1 JAKCWS010000126.1 98.01 True relocation, inconsistency = 249673 49161247 49162516 43680 42411 NC_060929.1 JAKCWS010000126.1 98.19 True relocation, inconsistency = -181054 49341282 49342300 44699 43681 NC_060929.1 JAKCWS010000126.1 98.11 True fake: not a misassembly (possible transposable element) 49406163 49407177 45718 44704 NC_060929.1 JAKCWS010000126.1 99.11 True fake: not a misassembly (possible transposable element) 49339720 49340262 46261 45719 NC_060929.1 JAKCWS010000126.1 99.14 True relocation, inconsistency = 239158 49098468 49100184 48356 46639 NC_060929.1 JAKCWS010000126.1 98.25 True relocation, inconsistency = -65238 49161247 49162516 50815 49546 NC_060929.1 JAKCWS010000126.1 98.19 True relocation, inconsistency = -123637 49283946 49284883 51753 50816 NC_060929.1 JAKCWS010000126.1 97.21 True relocation, inconsistency = -204171 49486028 49488116 53835 51754 NC_060929.1 JAKCWS010000126.1 97.13 True relocation, inconsistency = 35670 49447322 49449884 56872 54309 NC_060929.1 JAKCWS010000126.1 97.5 True relocation, inconsistency = 57407 49388170 49389122 58617 57665 NC_060929.1 JAKCWS010000126.1 98.53 True relocation, inconsistency = -166822 49550977 49553277 62628 60332 NC_060929.1 JAKCWS010000126.1 98.74 True relocation, inconsistency = -29566 49574059 49577450 69115 65721 NC_060929.1 JAKCWS010000126.1 97.76 True relocation, inconsistency = 149506 49419782 49424206 73886 69462 NC_060929.1 JAKCWS010000126.1 97.58 True local misassembly 49413052 49417413 78584 74220 NC_060929.1 JAKCWS010000126.1 97.5 True local misassembly 49415030 49417413 81703 79317 NC_060929.1 JAKCWS010000126.1 98.2 True fake: not a misassembly (possible transposable element) 49447322 49449684 88476 86113 NC_060929.1 JAKCWS010000126.1 98.48 True fake: not a misassembly (possible transposable element) 49404211 49407177 92862 89896 NC_060929.1 JAKCWS010000126.1 98.55 True local misassembly 49403138 49407177 97672 93634 NC_060929.1 JAKCWS010000126.1 98.17 True relocation, inconsistency = -83570 49483980 49486374 100400 98006 NC_060929.1 JAKCWS010000126.1 98.0 True CONTIG JAKCWS010000126.1 102145 misassembled 9216621 9257824 41179 1 NC_060937.1 JAKCWS010000127.1 99.16 True relocation, inconsistency = -44938 9216621 9261262 86110 41476 NC_060937.1 JAKCWS010000127.1 98.95 True indel: indel (> 5bp) 9201088 9216389 101726 86407 NC_060937.1 JAKCWS010000127.1 99.37 True CONTIG JAKCWS010000127.1 101726 misassembled 44392929 44397220 4293 1 NC_060932.1 JAKCWS010000128.1 99.16 True local misassembly 44389830 44398024 12493 4294 NC_060932.1 JAKCWS010000128.1 99.41 True local misassembly 44392929 44394927 14493 12494 NC_060932.1 JAKCWS010000128.1 99.39 True local misassembly 44389830 44398024 22693 14494 NC_060932.1 JAKCWS010000128.1 99.27 True local misassembly 44392929 44394927 24692 22694 NC_060932.1 JAKCWS010000128.1 99.23 True local misassembly 44389830 44398024 32891 24693 NC_060932.1 JAKCWS010000128.1 99.35 True local misassembly 44390380 44394927 37440 32892 NC_060932.1 JAKCWS010000128.1 99.38 True relocation, inconsistency = 32275 44351252 44358104 44298 37441 NC_060932.1 JAKCWS010000128.1 99.26 True local misassembly 44353009 44356348 47640 44299 NC_060932.1 JAKCWS010000128.1 99.31 True local misassembly 44351252 44358104 54498 47641 NC_060932.1 JAKCWS010000128.1 99.33 True local misassembly 44353009 44356348 57840 54499 NC_060932.1 JAKCWS010000128.1 99.36 True local misassembly 44353009 44358104 62938 57841 NC_060932.1 JAKCWS010000128.1 99.39 True local misassembly 44351252 44358104 69796 62939 NC_060932.1 JAKCWS010000128.1 99.34 True local misassembly 44353009 44356348 73138 69797 NC_060932.1 JAKCWS010000128.1 99.33 True local misassembly 44351252 44358104 79996 73139 NC_060932.1 JAKCWS010000128.1 99.34 True local misassembly 44353009 44356348 83338 79997 NC_060932.1 JAKCWS010000128.1 99.31 True local misassembly 44351252 44358104 90196 83339 NC_060932.1 JAKCWS010000128.1 99.33 True local misassembly 44353009 44356348 93538 90197 NC_060932.1 JAKCWS010000128.1 99.33 True local misassembly 44351973 44358104 99674 93539 NC_060932.1 JAKCWS010000128.1 99.28 True CONTIG JAKCWS010000128.1 99695 misassembled 44392929 44397974 5054 7 NC_060932.1 JAKCWS010000129.1 99.34 True local misassembly 44390380 44398024 12701 5055 NC_060932.1 JAKCWS010000129.1 99.34 True relocation, inconsistency = -7645 44388992 44398024 21737 12702 NC_060932.1 JAKCWS010000129.1 99.3 True relocation, inconsistency = 30919 44352445 44358072 27369 21738 NC_060932.1 JAKCWS010000129.1 99.35 True relocation, inconsistency = -10193 44358735 44361845 31275 28162 NC_060932.1 JAKCWS010000129.1 99.33 True local misassembly 44352552 44358104 37622 32068 NC_060932.1 JAKCWS010000129.1 99.25 True local misassembly 44347512 44358841 48957 37623 NC_060932.1 JAKCWS010000129.1 99.3 True local misassembly 44353009 44353800 49749 48958 NC_060932.1 JAKCWS010000129.1 99.32 True local misassembly 44351252 44358104 56604 49750 NC_060932.1 JAKCWS010000129.1 99.18 True local misassembly 44353009 44356348 59945 56605 NC_060932.1 JAKCWS010000129.1 99.3 True local misassembly 44351252 44358104 66800 59946 NC_060932.1 JAKCWS010000129.1 99.2 True local misassembly 44353009 44353800 67592 66801 NC_060932.1 JAKCWS010000129.1 99.12 True local misassembly 44351325 44358104 74374 67593 NC_060932.1 JAKCWS010000129.1 99.14 True relocation, inconsistency = -342492 44683371 44693816 84819 74375 NC_060932.1 JAKCWS010000129.1 99.33 True local misassembly 44674944 44676915 86791 84820 NC_060932.1 JAKCWS010000129.1 99.19 True relocation, inconsistency = 316839 44351252 44358104 93646 86792 NC_060932.1 JAKCWS010000129.1 99.17 True local misassembly 44351736 44356348 98260 93647 NC_060932.1 JAKCWS010000129.1 99.18 True CONTIG JAKCWS010000129.1 98260 misassembled 6191592 6223807 1 32231 NC_060939.1 JAKCWS010000130.1 98.22 True local misassembly 6218076 6266257 32261 80594 NC_060939.1 JAKCWS010000130.1 97.25 True fake: not a misassembly (possible transposable element) 13698982 13701003 80619 82624 NC_060939.1 JAKCWS010000130.1 96.27 True fake: not a misassembly (possible transposable element) 6267864 6269929 82625 84720 NC_060939.1 JAKCWS010000130.1 96.27 True relocation, inconsistency = 3358756 9628686 9640771 84721 96828 NC_060939.1 JAKCWS010000130.1 96.33 True CONTIG JAKCWS010000130.1 96843 misassembled 2669289 2693029 1 23732 NC_060938.1 JAKCWS010000131.1 99.39 True indel: indel (> 5bp) 2693330 2737301 23969 67679 NC_060938.1 JAKCWS010000131.1 98.68 True indel: indel (> 5bp) 2737602 2766402 67941 96801 NC_060938.1 JAKCWS010000131.1 99.09 True CONTIG JAKCWS010000131.1 96801 correct 19152191 19157199 5008 3 NC_060942.1 JAKCWS010000132.1 99.72 True unknown 18952789 18959803 19253 12239 NC_060942.1 JAKCWS010000132.1 99.81 True unknown 19258349 19267966 27379 17761 NC_060942.1 JAKCWS010000132.1 99.86 True unknown 19281814 19287950 36130 29994 NC_060942.1 JAKCWS010000132.1 99.82 True unknown 19285442 19290659 38945 33728 NC_060942.1 JAKCWS010000132.1 99.87 True unknown 19011794 19018837 53168 46125 NC_060942.1 JAKCWS010000132.1 99.83 True unknown 16305225 16305990 70345 69580 NC_060942.1 JAKCWS010000132.1 98.04 True unknown 19176611 19183695 79613 72529 NC_060942.1 JAKCWS010000132.1 99.93 True unknown CONTIG JAKCWS010000132.1 95709 mis_unaligned 7244363 7247515 3054 1 NC_060937.1 JAKCWS010000133.1 97.99 True translocation 4624197 4669157 47992 3055 NC_060939.1 JAKCWS010000133.1 99.27 True local misassembly 4577430 4624973 95613 47993 NC_060939.1 JAKCWS010000133.1 99.2 True CONTIG JAKCWS010000133.1 95613 misassembled 2781769 2793241 11503 1 NC_060938.1 JAKCWS010000134.1 98.62 True translocation 4361957 4444480 94281 11738 NC_060939.1 JAKCWS010000134.1 99.21 True CONTIG JAKCWS010000134.1 94281 misassembled 50728976 50735306 1 6331 NC_060940.1 JAKCWS010000135.1 99.98 True indel: stretch of mismatches 50735307 50747574 6332 18599 NC_060940.1 JAKCWS010000135.1 99.92 True relocation, inconsistency = -12224 50735351 50747090 18600 30362 NC_060940.1 JAKCWS010000135.1 99.66 True relocation, inconsistency = 410424 51157665 51158167 30513 31015 NC_060940.1 JAKCWS010000135.1 99.39 True relocation, inconsistency = -444060 50714108 50719869 31016 36774 NC_060940.1 JAKCWS010000135.1 99.27 True local misassembly 50713758 50726456 36775 49473 NC_060940.1 JAKCWS010000135.1 99.89 True indel: stretch of mismatches 50726457 50732090 49474 55107 NC_060940.1 JAKCWS010000135.1 99.8 True local misassembly 50725979 50735350 55108 64479 NC_060940.1 JAKCWS010000135.1 99.8 True local misassembly 50729239 50729906 64480 65147 NC_060940.1 JAKCWS010000135.1 99.75 True local misassembly 50728072 50735306 65148 72382 NC_060940.1 JAKCWS010000135.1 99.99 True indel: stretch of mismatches 50735307 50747574 72383 84650 NC_060940.1 JAKCWS010000135.1 99.92 True relocation, inconsistency = -12224 50735351 50741754 84651 91054 NC_060940.1 JAKCWS010000135.1 100.0 True CONTIG JAKCWS010000135.1 91054 misassembled 58329811 58344814 10 15005 NC_060930.1 JAKCWS010000136.1 98.02 True local misassembly 58340570 58372350 15006 46775 NC_060930.1 JAKCWS010000136.1 98.01 True local misassembly 58368106 58372335 46776 51003 NC_060930.1 JAKCWS010000136.1 97.96 True local misassembly 58368091 58372335 51004 55246 NC_060930.1 JAKCWS010000136.1 97.98 True local misassembly 58368091 58390703 55247 77869 NC_060930.1 JAKCWS010000136.1 98.52 True relocation, inconsistency = -19525 58371179 58383001 77870 89689 NC_060930.1 JAKCWS010000136.1 98.31 True CONTIG JAKCWS010000136.1 89689 misassembled 9170488 9257853 87489 1 NC_060937.1 JAKCWS010000137.1 99.07 True relocation, inconsistency = -44779 9213201 9215266 89558 87490 NC_060937.1 JAKCWS010000137.1 98.65 True CONTIG JAKCWS010000137.1 89558 misassembled 130930102 131019634 89542 1 NC_060926.1 JAKCWS010000138.1 99.96 True CONTIG JAKCWS010000138.1 89542 correct 3994988 4024270 29289 1 NC_060939.1 JAKCWS010000139.1 99.16 True relocation, inconsistency = 659450 3334959 3335537 29868 29290 NC_060939.1 JAKCWS010000139.1 97.77 True relocation, inconsistency = -572116 3906296 3907074 30639 29869 NC_060939.1 JAKCWS010000139.1 97.76 True translocation 9170363 9171584 31891 30640 NC_060937.1 JAKCWS010000139.1 95.94 True translocation 4489516 4535115 77795 32192 NC_060939.1 JAKCWS010000139.1 99.14 True translocation 9170829 9171325 78690 78170 NC_060937.1 JAKCWS010000139.1 95.58 True local misassembly 9170363 9171585 79933 78691 NC_060937.1 JAKCWS010000139.1 95.77 True translocation 4076908 4085825 89166 80242 NC_060939.1 JAKCWS010000139.1 99.18 True CONTIG JAKCWS010000139.1 89166 misassembled 2524587 2530949 1 6182 NC_060938.1 JAKCWS010000140.1 98.69 True translocation 5500463 5574472 6183 80277 NC_060945.1 JAKCWS010000140.1 98.89 True translocation 9170363 9177987 80588 88231 NC_060937.1 JAKCWS010000140.1 98.18 True CONTIG JAKCWS010000140.1 88231 misassembled 3769363 3857075 1 87886 NC_060945.1 JAKCWS010000141.1 98.88 True CONTIG JAKCWS010000141.1 87886 correct 9171932 9259642 87683 1 NC_060937.1 JAKCWS010000142.1 99.0 True CONTIG JAKCWS010000142.1 87683 correct 4686797 4773557 86812 1 NC_060946.1 JAKCWS010000143.1 99.79 True CONTIG JAKCWS010000143.1 86812 correct 2409631 2426590 16940 1 NC_060938.1 JAKCWS010000144.1 99.29 True translocation 4987797 5054214 83425 16941 NC_060946.1 JAKCWS010000144.1 99.6 True CONTIG JAKCWS010000144.1 83425 misassembled 5503493 5585045 1 81755 NC_060945.1 JAKCWS010000145.1 99.07 True translocation 9271745 9273124 81756 83144 NC_060937.1 JAKCWS010000145.1 98.96 True CONTIG JAKCWS010000145.1 83402 misassembled 2106356 2117493 1 11135 NC_060938.1 JAKCWS010000146.1 99.4 True indel: indel (> 5bp) 2117794 2161765 11370 55036 NC_060938.1 JAKCWS010000146.1 98.6 True indel: indel (> 5bp) 2162066 2190396 55273 83237 NC_060938.1 JAKCWS010000146.1 97.9 True CONTIG JAKCWS010000146.1 83237 correct 10250603 10262778 12181 1 NC_060945.1 JAKCWS010000147.1 99.87 True relocation, inconsistency = -27667 10207465 10278269 83002 12182 NC_060945.1 JAKCWS010000147.1 99.88 True CONTIG JAKCWS010000147.1 83011 misassembled 10550975 10553752 2777 1 NC_060938.1 JAKCWS010000148.1 98.47 True relocation, inconsistency = 178336 10367782 10372638 7633 2778 NC_060938.1 JAKCWS010000148.1 98.87 True indel: stretch of mismatches 10364102 10367598 11315 7817 NC_060938.1 JAKCWS010000148.1 97.42 True relocation, inconsistency = -193680 10549837 10557781 19260 11316 NC_060938.1 JAKCWS010000148.1 98.68 True relocation, inconsistency = 43644 10500737 10506192 24715 19261 NC_060938.1 JAKCWS010000148.1 98.65 True translocation 15606840 15611849 33161 28151 NC_060946.1 JAKCWS010000148.1 98.19 True translocation 10230908 10241557 43806 33162 NC_060938.1 JAKCWS010000148.1 98.8 True local misassembly 10230908 10232271 45169 43807 NC_060938.1 JAKCWS010000148.1 98.74 True relocation, inconsistency = -112979 10336942 10343660 52113 45396 NC_060938.1 JAKCWS010000148.1 98.76 True relocation, inconsistency = -11252 10335930 10343660 64375 56647 NC_060938.1 JAKCWS010000148.1 98.78 True local misassembly 10331024 10334565 67916 64376 NC_060938.1 JAKCWS010000148.1 98.65 True relocation, inconsistency = 32699 10291603 10298324 74643 67917 NC_060938.1 JAKCWS010000148.1 98.16 True relocation, inconsistency = -89292 10376439 10380822 79094 74716 NC_060938.1 JAKCWS010000148.1 98.81 True CONTIG JAKCWS010000148.1 79094 misassembled 2781769 2800085 18180 1 NC_060938.1 JAKCWS010000149.1 97.82 True indel: indel (> 5bp) 2737797 2781468 61926 18417 NC_060938.1 JAKCWS010000149.1 98.63 True translocation 3188322 3204373 78003 61927 NC_060939.1 JAKCWS010000149.1 98.64 True CONTIG JAKCWS010000149.1 78360 misassembled 4930004 5007966 78232 1 NC_060945.1 JAKCWS010000150.1 98.26 True CONTIG JAKCWS010000150.1 78232 correct 9215610 9229951 14387 1 NC_060937.1 JAKCWS010000151.1 98.15 True translocation 4444278 4490186 60276 14388 NC_060939.1 JAKCWS010000151.1 99.19 True local misassembly 4427656 4445057 77678 60277 NC_060939.1 JAKCWS010000151.1 99.43 True CONTIG JAKCWS010000151.1 77678 misassembled 50042233 50046980 1 4748 NC_060928.1 JAKCWS010000152.1 99.08 True local misassembly 50040517 50046918 4749 11146 NC_060928.1 JAKCWS010000152.1 99.09 True local misassembly 50040455 50050989 11147 21675 NC_060928.1 JAKCWS010000152.1 99.12 True local misassembly 50044526 50046918 21676 24066 NC_060928.1 JAKCWS010000152.1 99.1 True local misassembly 50040455 50050989 24067 34595 NC_060928.1 JAKCWS010000152.1 99.07 True local misassembly 50044526 50046918 34596 36986 NC_060928.1 JAKCWS010000152.1 99.08 True local misassembly 50040455 50050989 36987 47515 NC_060928.1 JAKCWS010000152.1 99.1 True local misassembly 50044526 50046947 47516 49935 NC_060928.1 JAKCWS010000152.1 99.09 True local misassembly 50040484 50046918 49936 56366 NC_060928.1 JAKCWS010000152.1 99.08 True local misassembly 50040455 50050989 56367 66895 NC_060928.1 JAKCWS010000152.1 99.1 True local misassembly 50044526 50046918 66896 69268 NC_060928.1 JAKCWS010000152.1 98.87 True local misassembly 50040455 50048696 69269 77504 NC_060928.1 JAKCWS010000152.1 99.09 True CONTIG JAKCWS010000152.1 77504 correct 58342298 58419563 18 77282 NC_060930.1 JAKCWS010000153.1 98.54 True CONTIG JAKCWS010000153.1 77282 correct 3141002 3204410 63455 1 NC_060945.1 JAKCWS010000154.1 98.65 True indel: indel (> 5bp) 3127412 3140682 77085 63860 NC_060945.1 JAKCWS010000154.1 98.8 True CONTIG JAKCWS010000154.1 77085 correct 2882801 2889061 1 6247 NC_060939.1 JAKCWS010000155.1 99.37 True translocation 4793796 4864015 6248 76582 NC_060946.1 JAKCWS010000155.1 99.5 True CONTIG JAKCWS010000155.1 76617 misassembled 30981502 31057436 75963 1 NC_060940.1 JAKCWS010000156.1 99.94 True CONTIG JAKCWS010000156.1 75963 correct 44351495 44356348 1 4852 NC_060932.1 JAKCWS010000157.1 99.23 True local misassembly 44351252 44358104 4853 11707 NC_060932.1 JAKCWS010000157.1 99.39 True relocation, inconsistency = -15127 44342978 44347511 11708 16241 NC_060932.1 JAKCWS010000157.1 99.35 True local misassembly 44342414 44348074 16242 21903 NC_060932.1 JAKCWS010000157.1 99.26 True local misassembly 44342978 44347511 21904 26437 NC_060932.1 JAKCWS010000157.1 99.31 True local misassembly 44342414 44348074 26438 32099 NC_060932.1 JAKCWS010000157.1 99.31 True local misassembly 44342978 44347511 32100 36633 NC_060932.1 JAKCWS010000157.1 99.28 True local misassembly 44342414 44347511 36634 41731 NC_060932.1 JAKCWS010000157.1 99.29 True local misassembly 44342414 44347498 41732 46818 NC_060932.1 JAKCWS010000157.1 99.35 True local misassembly 44341045 44348074 46819 53851 NC_060932.1 JAKCWS010000157.1 99.35 True local misassembly 44341622 44348074 53852 60306 NC_060932.1 JAKCWS010000157.1 99.32 True local misassembly 44342978 44347511 60307 64840 NC_060932.1 JAKCWS010000157.1 99.28 True local misassembly 44342414 44346318 64841 68746 NC_060932.1 JAKCWS010000157.1 99.35 True local misassembly 44351252 44357687 68747 75186 NC_060932.1 JAKCWS010000157.1 99.38 True CONTIG JAKCWS010000157.1 75220 misassembled 9280058 9344073 63998 1 NC_060937.1 JAKCWS010000158.1 98.38 True translocation 5489830 5500023 74174 63999 NC_060945.1 JAKCWS010000158.1 99.07 True CONTIG JAKCWS010000158.1 74197 misassembled 4081451 4155495 1 73764 NC_060939.1 JAKCWS010000159.1 98.64 True CONTIG JAKCWS010000159.1 73766 correct 11514210 11587968 73762 1 NC_060937.1 JAKCWS010000160.1 99.95 True CONTIG JAKCWS010000160.1 73762 correct 44116893 44120360 1 3463 NC_060941.1 JAKCWS010000161.1 98.67 True local misassembly 44114174 44169769 3464 58977 NC_060941.1 JAKCWS010000161.1 98.61 True local misassembly 44163594 44169641 58978 65005 NC_060941.1 JAKCWS010000161.1 98.6 True relocation, inconsistency = -55468 44114174 44121228 65006 72029 NC_060941.1 JAKCWS010000161.1 98.5 True CONTIG JAKCWS010000161.1 72029 misassembled 58347349 58419286 1 71947 NC_060930.1 JAKCWS010000162.1 98.55 True CONTIG JAKCWS010000162.1 71947 correct 4327902 4399775 71918 36 NC_060939.1 JAKCWS010000163.1 99.2 True CONTIG JAKCWS010000163.1 71918 correct 4062817 4110155 1 47329 NC_060945.1 JAKCWS010000164.1 98.72 True local misassembly 4110852 4135238 47330 71789 NC_060945.1 JAKCWS010000164.1 98.98 True CONTIG JAKCWS010000164.1 71789 correct 138690753 138694195 1 3445 NC_060925.1 JAKCWS010000165.1 99.34 True relocation, inconsistency = 731890 139426086 139436706 3446 14066 NC_060925.1 JAKCWS010000165.1 99.35 True relocation, inconsistency = -2235824 137200883 137220839 14067 34020 NC_060925.1 JAKCWS010000165.1 99.51 True local misassembly 137222616 137233513 34021 44918 NC_060925.1 JAKCWS010000165.1 99.67 True relocation, inconsistency = 137200 137370714 137391790 44919 65996 NC_060925.1 JAKCWS010000165.1 99.54 True local misassembly 137390015 137395211 65997 71193 NC_060925.1 JAKCWS010000165.1 99.66 True CONTIG JAKCWS010000165.1 71193 misassembled 5506219 5556910 1 50500 NC_060945.1 JAKCWS010000166.1 98.69 True translocation 2720615 2737301 50638 67349 NC_060938.1 JAKCWS010000166.1 99.39 True indel: indel (> 5bp) 2737602 2740990 67585 71016 NC_060938.1 JAKCWS010000166.1 97.42 True CONTIG JAKCWS010000166.1 71016 misassembled 33631360 33657345 1 25275 NC_060940.1 JAKCWS010000167.1 96.81 True relocation, inconsistency = 519556 33067759 33111427 69318 25652 NC_060940.1 JAKCWS010000167.1 99.95 True CONTIG JAKCWS010000167.1 69318 misassembled 92337711 92406551 68890 1 NC_060927.1 JAKCWS010000168.1 99.45 True CONTIG JAKCWS010000168.1 68909 correct 4803274 4813733 10449 3 NC_060945.1 JAKCWS010000169.1 99.09 True indel: indel (> 5bp) 4776799 4803142 36998 10565 NC_060945.1 JAKCWS010000169.1 98.65 True local misassembly 4775371 4776085 38421 37722 NC_060945.1 JAKCWS010000169.1 95.68 True local misassembly 4758889 4775119 54807 38564 NC_060945.1 JAKCWS010000169.1 99.31 True indel: indel (> 5bp) 4744851 4758757 68852 54923 NC_060945.1 JAKCWS010000169.1 99.16 True CONTIG JAKCWS010000169.1 68852 correct 2738360 2806691 36 68242 NC_060938.1 JAKCWS010000170.1 98.93 True CONTIG JAKCWS010000170.1 68242 correct 72996681 72997952 105 1376 NC_060933.1 JAKCWS010000171.1 99.84 True indel: indel (> 5bp) 72998121 72999205 1555 2639 NC_060933.1 JAKCWS010000171.1 99.91 True local misassembly 72999466 73002728 2640 5902 NC_060933.1 JAKCWS010000171.1 99.79 True indel: indel (> 5bp) 73002779 73004028 5903 7152 NC_060933.1 JAKCWS010000171.1 99.84 True local misassembly 73004944 73006760 8088 9904 NC_060933.1 JAKCWS010000171.1 99.89 True local misassembly 73009470 73010811 9905 11246 NC_060933.1 JAKCWS010000171.1 99.78 True indel: indel (<= 5bp) 73010812 73012416 11252 12856 NC_060933.1 JAKCWS010000171.1 99.94 True indel: indel (> 5bp) 73012427 73013567 12857 13997 NC_060933.1 JAKCWS010000171.1 99.82 True indel: indel (<= 5bp) 73013573 73014433 13998 14858 NC_060933.1 JAKCWS010000171.1 99.54 True indel: indel (<= 5bp) 73014434 73017254 14864 17684 NC_060933.1 JAKCWS010000171.1 99.79 True indel: indel (> 5bp) 73017300 73018087 17685 18472 NC_060933.1 JAKCWS010000171.1 99.87 True indel: indel (> 5bp) 73018429 73019462 18824 19857 NC_060933.1 JAKCWS010000171.1 100.0 True local misassembly 73014531 73028749 19858 34066 NC_060933.1 JAKCWS010000171.1 98.73 True local misassembly 73032534 73042877 34067 44390 NC_060933.1 JAKCWS010000171.1 96.16 True local misassembly 73038378 73039234 44391 45247 NC_060933.1 JAKCWS010000171.1 100.0 True indel: indel (> 5bp) 73039530 73040472 45553 46495 NC_060933.1 JAKCWS010000171.1 99.78 True relocation, inconsistency = 24653 73065126 73077458 46496 58992 NC_060933.1 JAKCWS010000171.1 96.92 True relocation, inconsistency = -34690 73043253 73044392 59477 60616 NC_060933.1 JAKCWS010000171.1 100.0 True indel: indel (<= 5bp) 73044393 73045087 60622 61316 NC_060933.1 JAKCWS010000171.1 100.0 True local misassembly 73048749 73049902 61823 62976 NC_060933.1 JAKCWS010000171.1 99.83 True indel: indel (<= 5bp) 73049903 73050573 62982 63652 NC_060933.1 JAKCWS010000171.1 100.0 True indel: indel (> 5bp) 73050584 73051955 63653 65024 NC_060933.1 JAKCWS010000171.1 100.0 True indel: indel (<= 5bp) 73051956 73052932 65030 66006 NC_060933.1 JAKCWS010000171.1 99.59 True indel: indel (> 5bp) 73052933 73053465 66017 66549 NC_060933.1 JAKCWS010000171.1 100.0 True indel: indel (> 5bp) 73053476 73054985 66550 68059 NC_060933.1 JAKCWS010000171.1 99.93 True CONTIG JAKCWS010000171.1 68059 misassembled 58349970 58417193 1 67226 NC_060930.1 JAKCWS010000172.1 98.54 True CONTIG JAKCWS010000172.1 67226 correct 19038924 19044460 4715 10251 NC_060942.1 JAKCWS010000173.1 99.8 True local misassembly 19042426 19044460 10252 12286 NC_060942.1 JAKCWS010000173.1 99.84 True relocation, inconsistency = -223111 18824970 18830441 15907 21380 NC_060942.1 JAKCWS010000173.1 99.67 True relocation, inconsistency = 393018 19225784 19232827 23705 30748 NC_060942.1 JAKCWS010000173.1 99.8 True indel: stretch of mismatches 19232828 19238932 30749 36853 NC_060942.1 JAKCWS010000173.1 99.86 True relocation, inconsistency = -121748 19121369 19124385 41038 44054 NC_060942.1 JAKCWS010000173.1 99.81 True local misassembly 19120316 19136398 44055 60138 NC_060942.1 JAKCWS010000173.1 99.76 True relocation, inconsistency = 25770 19162366 19168054 60336 66024 NC_060942.1 JAKCWS010000173.1 99.82 True CONTIG JAKCWS010000173.1 67101 misassembled 58382551 58402697 20147 1 NC_060930.1 JAKCWS010000174.1 98.79 True local misassembly 58343629 58380810 59748 21870 NC_060930.1 JAKCWS010000174.1 96.1 True local misassembly 58338496 58344814 66059 59749 NC_060930.1 JAKCWS010000174.1 97.84 True CONTIG JAKCWS010000174.1 66066 correct 49457307 49462071 4782 14 NC_060929.1 JAKCWS010000175.1 97.85 True local misassembly 49456085 49462738 11438 4783 NC_060929.1 JAKCWS010000175.1 97.76 True local misassembly 49458035 49461518 14924 11439 NC_060929.1 JAKCWS010000175.1 97.71 True local misassembly 49458666 49462107 18370 14925 NC_060929.1 JAKCWS010000175.1 98.01 True local misassembly 49456085 49462738 25028 18371 NC_060929.1 JAKCWS010000175.1 97.72 True local misassembly 49456085 49461518 30464 25029 NC_060929.1 JAKCWS010000175.1 97.96 True local misassembly 49460184 49461518 31799 30465 NC_060929.1 JAKCWS010000175.1 98.31 True indel: indel (<= 5bp) 49458431 49460183 33554 31802 NC_060929.1 JAKCWS010000175.1 98.29 True indel: stretch of mismatches 49457072 49458374 34913 33611 NC_060929.1 JAKCWS010000175.1 98.16 True indel: stretch of mismatches 49456085 49457015 35900 34970 NC_060929.1 JAKCWS010000175.1 98.17 True local misassembly 49448201 49455110 43785 36877 NC_060929.1 JAKCWS010000175.1 98.13 True local misassembly 49449367 49450918 45337 43786 NC_060929.1 JAKCWS010000175.1 97.86 True local misassembly 49445185 49446776 47818 46227 NC_060929.1 JAKCWS010000175.1 97.93 True indel: stretch of mismatches 49443091 49445128 49912 47875 NC_060929.1 JAKCWS010000175.1 98.09 True indel: indel (<= 5bp) 49442535 49443090 50469 49914 NC_060929.1 JAKCWS010000175.1 95.5 True relocation, inconsistency = -21057 49456085 49463425 57976 50636 NC_060929.1 JAKCWS010000175.1 97.82 True local misassembly 49456085 49460161 62053 57977 NC_060929.1 JAKCWS010000175.1 97.84 True relocation, inconsistency = 90354 49363641 49365689 64143 62095 NC_060929.1 JAKCWS010000175.1 97.61 True CONTIG JAKCWS010000175.1 64143 misassembled 9227111 9260469 9 33368 NC_060937.1 JAKCWS010000176.1 99.59 True translocation 5396510 5397475 33369 34212 NC_060945.1 JAKCWS010000176.1 97.12 True local misassembly 5398189 5424532 34932 61368 NC_060945.1 JAKCWS010000176.1 98.68 True translocation 2507743 2510346 61369 63960 NC_060939.1 JAKCWS010000176.1 95.11 True CONTIG JAKCWS010000176.1 63960 misassembled 4357925 4421458 1 63299 NC_060939.1 JAKCWS010000177.1 98.75 True CONTIG JAKCWS010000177.1 63299 correct 58351394 58414205 62812 1 NC_060930.1 JAKCWS010000178.1 98.6 True CONTIG JAKCWS010000178.1 62812 correct 5036630 5099315 1 62687 NC_060946.1 JAKCWS010000179.1 99.72 True CONTIG JAKCWS010000179.1 62687 correct 47168184 47168766 1 583 NC_060929.1 JAKCWS010000180.1 97.94 True relocation, inconsistency = 2287192 49456085 49462738 710 7370 NC_060929.1 JAKCWS010000180.1 97.75 True local misassembly 49457307 49461518 7371 11584 NC_060929.1 JAKCWS010000180.1 97.84 True local misassembly 49456085 49462738 11585 18242 NC_060929.1 JAKCWS010000180.1 97.81 True local misassembly 49457307 49458802 18243 19734 NC_060929.1 JAKCWS010000180.1 97.78 True local misassembly 49456085 49462738 19735 26392 NC_060929.1 JAKCWS010000180.1 97.87 True local misassembly 49457307 49461518 26393 30606 NC_060929.1 JAKCWS010000180.1 97.85 True local misassembly 49456085 49462738 30607 37264 NC_060929.1 JAKCWS010000180.1 97.81 True local misassembly 49457307 49461518 37265 41478 NC_060929.1 JAKCWS010000180.1 97.87 True local misassembly 49456085 49462738 41479 48136 NC_060929.1 JAKCWS010000180.1 97.85 True local misassembly 49457307 49461518 48137 52350 NC_060929.1 JAKCWS010000180.1 97.85 True local misassembly 49456085 49462724 52351 58994 NC_060929.1 JAKCWS010000180.1 97.86 True local misassembly 49458652 49462252 58995 62601 NC_060929.1 JAKCWS010000180.1 97.88 True CONTIG JAKCWS010000180.1 62618 misassembled 92577353 92580063 1 2708 NC_060927.1 JAKCWS010000181.1 96.56 True relocation, inconsistency = 306949 92887013 92898238 2709 13596 NC_060927.1 JAKCWS010000181.1 96.61 True relocation, inconsistency = -346079 92552160 92553622 13597 15059 NC_060927.1 JAKCWS010000181.1 97.24 True local misassembly 92547839 92560849 15060 28406 NC_060927.1 JAKCWS010000181.1 97.38 True local misassembly 92563739 92585520 28407 50175 NC_060927.1 JAKCWS010000181.1 99.61 True relocation, inconsistency = -19229 92566292 92578401 50176 62279 NC_060927.1 JAKCWS010000181.1 99.69 True CONTIG JAKCWS010000181.1 62279 misassembled 100366774 100424799 1 57951 NC_060938.1 JAKCWS010000182.1 99.67 True translocation 33368233 33371462 58847 62083 NC_060940.1 JAKCWS010000182.1 96.88 True CONTIG JAKCWS010000182.1 62083 misassembled 57147672 57203855 56184 1 NC_060948.1 JAKCWS010000183.1 99.88 True relocation, inconsistency = -1778549 58920326 58926220 62079 56185 NC_060948.1 JAKCWS010000183.1 99.77 True CONTIG JAKCWS010000183.1 62079 misassembled 58366312 58411853 45208 1 NC_060930.1 JAKCWS010000184.1 97.96 True indel: indel (<= 5bp) 58349776 58366234 61400 45287 NC_060930.1 JAKCWS010000184.1 96.04 True CONTIG JAKCWS010000184.1 61400 correct 58351110 58412485 61379 1 NC_060930.1 JAKCWS010000185.1 98.48 True CONTIG JAKCWS010000185.1 61379 correct 19286910 19290629 1 3717 NC_060942.1 JAKCWS010000186.1 96.89 True local misassembly 19285884 19300302 3718 17798 NC_060942.1 JAKCWS010000186.1 97.54 True indel: stretch of mismatches 19300303 19302298 17799 19794 NC_060942.1 JAKCWS010000186.1 99.82 True local misassembly 19300264 19310359 19795 29890 NC_060942.1 JAKCWS010000186.1 99.83 True relocation, inconsistency = 7808 19318168 19322696 29891 34419 NC_060942.1 JAKCWS010000186.1 99.91 True local misassembly 19325834 19329903 37557 41626 NC_060942.1 JAKCWS010000186.1 99.87 True local misassembly 19323799 19332412 41627 50240 NC_060942.1 JAKCWS010000186.1 99.64 True relocation, inconsistency = -109203 19227835 19232333 54866 59364 NC_060942.1 JAKCWS010000186.1 99.87 True CONTIG JAKCWS010000186.1 60709 misassembled 50042188 50046947 1 4759 NC_060928.1 JAKCWS010000187.1 99.14 True local misassembly 50040484 50046918 4760 11190 NC_060928.1 JAKCWS010000187.1 99.09 True local misassembly 50040455 50050989 11191 21719 NC_060928.1 JAKCWS010000187.1 99.09 True local misassembly 50044526 50046947 21720 24139 NC_060928.1 JAKCWS010000187.1 99.09 True local misassembly 50040484 50046918 24140 30570 NC_060928.1 JAKCWS010000187.1 99.08 True local misassembly 50040455 50050989 30571 41095 NC_060928.1 JAKCWS010000187.1 98.99 True local misassembly 50044526 50046918 41096 43485 NC_060928.1 JAKCWS010000187.1 98.97 True local misassembly 50040455 50050989 43486 54013 NC_060928.1 JAKCWS010000187.1 99.06 True local misassembly 50044526 50050989 54014 60470 NC_060928.1 JAKCWS010000187.1 99.03 True CONTIG JAKCWS010000187.1 60526 correct 2306421 2339596 1 33105 NC_060938.1 JAKCWS010000188.1 99.42 True translocation 4085018 4111550 33106 59622 NC_060939.1 JAKCWS010000188.1 99.08 True CONTIG JAKCWS010000188.1 59622 misassembled 3233822 3260880 1 27004 NC_060945.1 JAKCWS010000189.1 99.09 True local misassembly 3260068 3292320 27005 59424 NC_060945.1 JAKCWS010000189.1 98.3 True CONTIG JAKCWS010000189.1 59424 correct 5323671 5363371 1 39680 NC_060946.1 JAKCWS010000190.1 99.56 True translocation 3192479 3212107 39681 59277 NC_060939.1 JAKCWS010000190.1 99.19 True CONTIG JAKCWS010000190.1 59277 misassembled 9279700 9337905 58205 1 NC_060948.1 JAKCWS010000191.1 100.0 True CONTIG JAKCWS010000191.1 58205 correct 49455478 49456114 2595 1958 NC_060929.1 JAKCWS010000192.1 97.96 True relocation, inconsistency = 13923 49435042 49438340 9110 5810 NC_060929.1 JAKCWS010000192.1 97.73 True indel: stretch of mismatches 49432939 49434598 11213 9554 NC_060929.1 JAKCWS010000192.1 97.83 True local misassembly 49423766 49426500 14610 11874 NC_060929.1 JAKCWS010000192.1 97.3 True relocation, inconsistency = 81524 49339863 49341371 16989 15481 NC_060929.1 JAKCWS010000192.1 98.21 True relocation, inconsistency = -118886 49455357 49455997 20381 19741 NC_060929.1 JAKCWS010000192.1 97.5 True local misassembly 49453317 49454693 22081 20705 NC_060929.1 JAKCWS010000192.1 97.17 True local misassembly 49455478 49456114 25352 24715 NC_060929.1 JAKCWS010000192.1 97.96 True relocation, inconsistency = 139275 49314501 49315842 27055 25713 NC_060929.1 JAKCWS010000192.1 98.66 True local misassembly 49311326 49313768 30232 27789 NC_060929.1 JAKCWS010000192.1 98.53 True local misassembly 49308947 49309587 32611 31971 NC_060929.1 JAKCWS010000192.1 97.97 True relocation, inconsistency = -149801 49455478 49456114 35882 35245 NC_060929.1 JAKCWS010000192.1 97.96 True relocation, inconsistency = 116852 49336787 49338265 37722 36243 NC_060929.1 JAKCWS010000192.1 97.97 True local misassembly 49337919 49340267 40668 38319 NC_060929.1 JAKCWS010000192.1 98.47 True relocation, inconsistency = -12910 49348197 49350495 43301 41002 NC_060929.1 JAKCWS010000192.1 98.43 True relocation, inconsistency = -205545 49551023 49553277 46020 43766 NC_060929.1 JAKCWS010000192.1 98.67 True local misassembly 49549963 49552635 49799 47127 NC_060929.1 JAKCWS010000192.1 97.31 True local misassembly 49548425 49549214 51677 50888 NC_060929.1 JAKCWS010000192.1 98.73 True relocation, inconsistency = 51653 49494564 49496771 53885 51678 NC_060929.1 JAKCWS010000192.1 98.78 True relocation, inconsistency = 151851 49340863 49342284 55735 54314 NC_060929.1 JAKCWS010000192.1 98.31 True local misassembly 49338919 49340239 57680 56360 NC_060929.1 JAKCWS010000192.1 98.49 True CONTIG JAKCWS010000192.1 57680 misassembled 58352247 58409848 24 57614 NC_060930.1 JAKCWS010000193.1 98.56 True CONTIG JAKCWS010000193.1 57614 correct 60129186 60186133 1 56949 NC_060931.1 JAKCWS010000194.1 99.99 True CONTIG JAKCWS010000194.1 56949 correct 5619166 5620703 1 1553 NC_060946.1 JAKCWS010000195.1 98.58 True translocation 3109736 3127045 2120 19409 NC_060945.1 JAKCWS010000195.1 99.4 True local misassembly 3126325 3163356 19410 56544 NC_060945.1 JAKCWS010000195.1 98.11 True CONTIG JAKCWS010000195.1 56544 misassembled 4338577 4355399 1 16821 NC_060939.1 JAKCWS010000196.1 99.44 True translocation 9170363 9171584 17120 18369 NC_060937.1 JAKCWS010000196.1 96.09 True translocation 3247061 3247639 18370 18938 NC_060939.1 JAKCWS010000196.1 97.56 True relocation, inconsistency = 262915 3510555 3511333 18939 19717 NC_060939.1 JAKCWS010000196.1 97.77 True relocation, inconsistency = 438725 3950059 3986883 19718 56501 NC_060939.1 JAKCWS010000196.1 99.21 True CONTIG JAKCWS010000196.1 56501 misassembled 4820194 4876414 56368 1 NC_060945.1 JAKCWS010000197.1 98.65 True CONTIG JAKCWS010000197.1 56368 correct 26094870 26150998 56136 1 NC_060939.1 JAKCWS010000198.1 99.94 True CONTIG JAKCWS010000198.1 56136 correct 95740457 95796638 56043 1 NC_060927.1 JAKCWS010000199.1 97.38 True CONTIG JAKCWS010000199.1 56043 correct 50042359 50049840 7476 1 NC_060928.1 JAKCWS010000200.1 99.05 True relocation, inconsistency = -5131918 55172437 55174099 9318 7654 NC_060928.1 JAKCWS010000200.1 97.54 True relocation, inconsistency = 412816 54749558 54759620 19376 9319 NC_060928.1 JAKCWS010000200.1 99.02 True local misassembly 54751017 54755342 23698 19377 NC_060928.1 JAKCWS010000200.1 98.59 True local misassembly 54751498 54756289 28487 23699 NC_060928.1 JAKCWS010000200.1 98.7 True relocation, inconsistency = -8505 54743394 54760002 45087 28488 NC_060928.1 JAKCWS010000200.1 98.71 True relocation, inconsistency = 4445444 50293601 50297949 49433 45088 NC_060928.1 JAKCWS010000200.1 99.11 True local misassembly 50292248 50298022 55203 49434 NC_060928.1 JAKCWS010000200.1 99.12 True CONTIG JAKCWS010000200.1 55203 misassembled 5522172 5529954 1 7769 NC_060945.1 JAKCWS010000201.1 98.96 True translocation 2737602 2781453 7770 51426 NC_060938.1 JAKCWS010000201.1 98.65 True indel: indel (> 5bp) 2781780 2785199 51688 55141 NC_060938.1 JAKCWS010000201.1 97.67 True CONTIG JAKCWS010000201.1 55158 misassembled 3940802 3996161 1 54987 NC_060946.1 JAKCWS010000202.1 98.98 True CONTIG JAKCWS010000202.1 54987 correct 193473426 193528397 1 54986 NC_060928.1 JAKCWS010000203.1 99.73 True CONTIG JAKCWS010000203.1 54986 correct 5592694 5606927 14304 64 NC_060946.1 JAKCWS010000204.1 98.61 True translocation 9221332 9261262 54696 14729 NC_060937.1 JAKCWS010000204.1 99.13 True CONTIG JAKCWS010000204.1 54696 misassembled 143675021 143729305 54300 1 NC_060925.1 JAKCWS010000205.1 99.97 True CONTIG JAKCWS010000205.1 54300 correct 57372643 57425798 1 53156 NC_060948.1 JAKCWS010000206.1 100.0 True CONTIG JAKCWS010000206.1 53156 correct 99996485 100017490 1 21006 NC_060938.1 JAKCWS010000207.1 100.0 True relocation, inconsistency = 10042 100027533 100044900 21007 38374 NC_060938.1 JAKCWS010000207.1 99.98 True relocation, inconsistency = 85751 100130678 100136182 38401 43956 NC_060938.1 JAKCWS010000207.1 98.74 True relocation, inconsistency = 722122 100858384 100867130 44036 52786 NC_060938.1 JAKCWS010000207.1 98.87 True CONTIG JAKCWS010000207.1 52786 misassembled 134705077 134755089 16 50086 NC_060934.1 JAKCWS010000208.1 99.83 True translocation 99751208 99751792 52175 52766 NC_060939.1 JAKCWS010000208.1 97.32 True CONTIG JAKCWS010000208.1 52776 misassembled 9209897 9262188 1 52319 NC_060937.1 JAKCWS010000209.1 99.05 True CONTIG JAKCWS010000209.1 52319 correct 9170363 9175647 5299 8 NC_060937.1 JAKCWS010000210.1 98.07 True translocation 4489207 4535115 51512 5596 NC_060939.1 JAKCWS010000210.1 99.21 True translocation 5637623 5638182 52074 51513 NC_060946.1 JAKCWS010000210.1 96.36 True CONTIG JAKCWS010000210.1 52093 misassembled 89673068 89725031 51988 1 NC_060926.1 JAKCWS010000211.1 99.9 True CONTIG JAKCWS010000211.1 51988 correct 5476591 5513299 1 36776 NC_060945.1 JAKCWS010000212.1 98.73 True indel: indel (> 5bp) 5513435 5528241 36892 51670 NC_060945.1 JAKCWS010000212.1 99.33 True CONTIG JAKCWS010000212.1 51670 correct 5312596 5335762 1 23207 NC_060945.1 JAKCWS010000213.1 98.94 True indel: indel (> 5bp) 5335894 5352124 23323 39565 NC_060945.1 JAKCWS010000213.1 99.4 True local misassembly 5352376 5353090 39708 40407 NC_060945.1 JAKCWS010000213.1 95.68 True local misassembly 5353804 5363674 41130 51049 NC_060945.1 JAKCWS010000213.1 97.65 True CONTIG JAKCWS010000213.1 51049 correct 59471137 59471703 567 1 NC_060948.1 JAKCWS010000214.1 98.75 True local misassembly 59417343 59467578 50825 568 NC_060948.1 JAKCWS010000214.1 99.89 True CONTIG JAKCWS010000214.1 50825 correct 4617396 4668121 50700 1 NC_060939.1 JAKCWS010000215.1 99.08 True CONTIG JAKCWS010000215.1 50700 correct 8580300 8621666 1 41261 NC_060937.1 JAKCWS010000216.1 98.49 True translocation 5543230 5552487 41262 50356 NC_060945.1 JAKCWS010000216.1 98.09 True CONTIG JAKCWS010000216.1 50356 misassembled 9219332 9261262 1 41938 NC_060937.1 JAKCWS010000217.1 99.11 True indel: indel (> 5bp) 9261623 9269494 42363 50291 NC_060937.1 JAKCWS010000217.1 98.68 True CONTIG JAKCWS010000217.1 50311 correct 9170363 9182880 12512 1 NC_060937.1 JAKCWS010000218.1 98.37 True translocation 2257993 2295324 50178 12849 NC_060938.1 JAKCWS010000218.1 99.58 True CONTIG JAKCWS010000218.1 50178 misassembled 58363813 58364353 541 1 NC_060930.1 JAKCWS010000219.1 97.23 True local misassembly 58369339 58369927 1130 542 NC_060930.1 JAKCWS010000219.1 97.45 True local misassembly 58374668 58375329 1915 1254 NC_060930.1 JAKCWS010000219.1 98.49 True local misassembly 58379142 58379764 3215 2593 NC_060930.1 JAKCWS010000219.1 99.04 True indel: indel (<= 5bp) 58378242 58378892 4117 3467 NC_060930.1 JAKCWS010000219.1 99.23 True local misassembly 58377048 58381117 8366 4297 NC_060930.1 JAKCWS010000219.1 99.16 True local misassembly 58381637 58382820 9550 8367 NC_060930.1 JAKCWS010000219.1 98.99 True indel: indel (<= 5bp) 58377048 58381636 14140 9552 NC_060930.1 JAKCWS010000219.1 99.22 True local misassembly 58377048 58379764 16857 14141 NC_060930.1 JAKCWS010000219.1 99.26 True local misassembly 58381637 58382820 18041 16858 NC_060930.1 JAKCWS010000219.1 98.99 True indel: indel (<= 5bp) 58370905 58381636 28774 18043 NC_060930.1 JAKCWS010000219.1 98.64 True indel: indel (<= 5bp) 58364789 58370902 34888 28775 NC_060930.1 JAKCWS010000219.1 98.1 True indel: indel (<= 5bp) 58358711 58364786 40964 34889 NC_060930.1 JAKCWS010000219.1 98.12 True local misassembly 58355643 58358368 43690 40965 NC_060930.1 JAKCWS010000219.1 98.13 True local misassembly 58349525 58352241 46409 43693 NC_060930.1 JAKCWS010000219.1 98.05 True local misassembly 58343384 58346127 49153 46410 NC_060930.1 JAKCWS010000219.1 98.18 True indel: indel (<= 5bp) 58342707 58343381 49828 49154 NC_060930.1 JAKCWS010000219.1 98.37 True CONTIG JAKCWS010000219.1 49828 correct 9216648 9266090 49499 1 NC_060937.1 JAKCWS010000220.1 99.11 True CONTIG JAKCWS010000220.1 49499 correct 5463737 5513127 49477 1 NC_060945.1 JAKCWS010000221.1 98.87 True CONTIG JAKCWS010000221.1 49477 correct 58352117 58401080 48962 1 NC_060930.1 JAKCWS010000222.1 98.56 True CONTIG JAKCWS010000222.1 48962 correct 88829520 88878470 48960 1 NC_060926.1 JAKCWS010000223.1 99.84 True CONTIG JAKCWS010000223.1 48960 correct 5178966 5227716 1 48815 NC_060945.1 JAKCWS010000224.1 98.86 True CONTIG JAKCWS010000224.1 48819 correct 4354420 4380326 25925 1 NC_060939.1 JAKCWS010000225.1 99.22 True local misassembly 4333109 4355399 48806 26501 NC_060939.1 JAKCWS010000225.1 99.34 True CONTIG JAKCWS010000225.1 48806 correct 4264765 4287070 22309 5 NC_060939.1 JAKCWS010000226.1 98.71 True local misassembly 4240191 4265541 47663 22310 NC_060939.1 JAKCWS010000226.1 99.46 True CONTIG JAKCWS010000226.1 47663 correct 5508290 5555849 47570 1 NC_060945.1 JAKCWS010000227.1 99.04 True CONTIG JAKCWS010000227.1 47570 correct 58365034 58382800 17759 1 NC_060930.1 JAKCWS010000228.1 98.29 True relocation, inconsistency = -19529 58371167 58384562 31156 17760 NC_060930.1 JAKCWS010000228.1 98.59 True local misassembly 58352901 58369293 47552 31157 NC_060930.1 JAKCWS010000228.1 97.88 True CONTIG JAKCWS010000228.1 47552 misassembled 3924209 3971235 47083 1 NC_060939.1 JAKCWS010000229.1 98.88 True CONTIG JAKCWS010000229.1 47425 correct 4048729 4064959 16519 279 NC_060945.1 JAKCWS010000230.1 99.35 True indel: indel (> 5bp) 4022254 4048597 43070 16635 NC_060945.1 JAKCWS010000230.1 98.68 True local misassembly 4018151 4021540 47064 43790 NC_060945.1 JAKCWS010000230.1 95.09 True CONTIG JAKCWS010000230.1 47064 correct 4332875 4355399 1 22536 NC_060939.1 JAKCWS010000231.1 99.42 True translocation 9170363 9171584 22843 24085 NC_060937.1 JAKCWS010000231.1 97.11 True local misassembly 9170363 9171113 24388 25154 NC_060937.1 JAKCWS010000231.1 95.76 True local misassembly 9170363 9191799 25155 46617 NC_060937.1 JAKCWS010000231.1 98.75 True CONTIG JAKCWS010000231.1 46617 misassembled 5392724 5439308 1 46585 NC_060946.1 JAKCWS010000232.1 99.62 True CONTIG JAKCWS010000232.1 46585 correct 58354325 58400908 1 46568 NC_060930.1 JAKCWS010000233.1 98.53 True CONTIG JAKCWS010000233.1 46568 correct 50007571 50013693 1 6119 NC_060928.1 JAKCWS010000234.1 99.19 True local misassembly 50007230 50013693 6120 12412 NC_060928.1 JAKCWS010000234.1 97.4 True local misassembly 50007230 50016372 12413 21549 NC_060928.1 JAKCWS010000234.1 99.2 True local misassembly 50009909 50013693 21550 25332 NC_060928.1 JAKCWS010000234.1 99.17 True local misassembly 50007230 50016372 25333 34469 NC_060928.1 JAKCWS010000234.1 99.16 True local misassembly 50009909 50013693 34470 38252 NC_060928.1 JAKCWS010000234.1 99.17 True local misassembly 50007230 50015401 38253 46420 NC_060928.1 JAKCWS010000234.1 99.19 True CONTIG JAKCWS010000234.1 46420 correct 3114065 3126795 1 12687 NC_060945.1 JAKCWS010000235.1 99.26 True translocation 9170363 9175670 12998 18324 NC_060937.1 JAKCWS010000235.1 98.17 True translocation 2475913 2503252 18411 45758 NC_060938.1 JAKCWS010000235.1 99.61 True CONTIG JAKCWS010000235.1 45758 misassembled 45815188 45816034 865 11 NC_060932.1 JAKCWS010000236.1 98.97 True relocation, inconsistency = 1457083 44351252 44358104 7720 866 NC_060932.1 JAKCWS010000236.1 99.3 True local misassembly 44353009 44353800 8512 7721 NC_060932.1 JAKCWS010000236.1 99.31 True local misassembly 44351252 44358104 15367 8513 NC_060932.1 JAKCWS010000236.1 99.33 True local misassembly 44353009 44356348 18708 15368 NC_060932.1 JAKCWS010000236.1 99.39 True local misassembly 44351252 44358104 25563 18709 NC_060932.1 JAKCWS010000236.1 99.36 True local misassembly 44353009 44356348 28904 25564 NC_060932.1 JAKCWS010000236.1 99.36 True local misassembly 44351252 44358104 35759 28905 NC_060932.1 JAKCWS010000236.1 99.34 True local misassembly 44353009 44356348 39100 35760 NC_060932.1 JAKCWS010000236.1 99.35 True local misassembly 44352289 44358104 44918 39101 NC_060932.1 JAKCWS010000236.1 99.36 True CONTIG JAKCWS010000236.1 44918 misassembled 4948474 4993333 44865 1 NC_060946.1 JAKCWS010000237.1 99.59 True CONTIG JAKCWS010000237.1 44865 correct 4450903 4495831 44829 1 NC_060939.1 JAKCWS010000238.1 99.35 True CONTIG JAKCWS010000238.1 44829 correct 10677043 10699913 1 22865 NC_060945.1 JAKCWS010000239.1 99.92 True indel: indel (> 5bp) 10699928 10721757 22940 44556 NC_060945.1 JAKCWS010000239.1 98.86 True CONTIG JAKCWS010000239.1 44556 correct 5102714 5113837 1 11130 NC_060945.1 JAKCWS010000240.1 99.12 True indel: indel (> 5bp) 5113969 5131165 11246 28312 NC_060945.1 JAKCWS010000240.1 98.41 True local misassembly 5131879 5147103 29032 44343 NC_060945.1 JAKCWS010000240.1 98.32 True CONTIG JAKCWS010000240.1 44348 correct 2737299 2781336 44087 83 NC_060938.1 JAKCWS010000241.1 98.67 True CONTIG JAKCWS010000241.1 44139 correct 4117183 4161153 1 44046 NC_060945.1 JAKCWS010000242.1 98.85 True CONTIG JAKCWS010000242.1 44046 correct 9173093 9216485 1 43341 NC_060937.1 JAKCWS010000243.1 99.12 True CONTIG JAKCWS010000243.1 43341 correct 58855105 58898119 1 43014 NC_060931.1 JAKCWS010000244.1 100.0 True CONTIG JAKCWS010000244.1 43014 correct 9227417 9261262 1 33874 NC_060937.1 JAKCWS010000245.1 99.18 True indel: indel (> 5bp) 9261623 9270116 34299 42838 NC_060937.1 JAKCWS010000245.1 98.63 True CONTIG JAKCWS010000245.1 42838 correct 5513435 5528382 14960 1 NC_060945.1 JAKCWS010000246.1 99.43 True indel: indel (> 5bp) 5486959 5513299 41503 15076 NC_060945.1 JAKCWS010000246.1 98.7 True CONTIG JAKCWS010000246.1 42707 correct 4173530 4181748 20 8229 NC_060945.1 JAKCWS010000247.1 98.27 True indel: indel (> 5bp) 4181884 4198114 8348 24578 NC_060945.1 JAKCWS010000247.1 99.34 True local misassembly 4198368 4199080 24721 25422 NC_060945.1 JAKCWS010000247.1 95.41 True local misassembly 4199794 4216267 26144 42706 NC_060945.1 JAKCWS010000247.1 98.32 True CONTIG JAKCWS010000247.1 42706 correct 9230230 9243287 13027 1 NC_060937.1 JAKCWS010000248.1 98.23 True translocation 5513968 5543435 42461 13028 NC_060945.1 JAKCWS010000248.1 99.09 True CONTIG JAKCWS010000248.1 42461 misassembled 2250466 2251093 1162 531 NC_060938.1 JAKCWS010000249.1 95.78 True indel: indel (> 5bp) 2209237 2250279 42344 1281 NC_060938.1 JAKCWS010000249.1 99.3 True CONTIG JAKCWS010000249.1 42344 correct 21804711 21847012 1 42304 NC_060946.1 JAKCWS010000250.1 99.96 True CONTIG JAKCWS010000250.1 42304 correct 4151863 4194139 42249 1 NC_060939.1 JAKCWS010000251.1 99.18 True CONTIG JAKCWS010000251.1 42249 correct 23569572 23573265 1 3694 NC_060934.1 JAKCWS010000252.1 99.89 True local misassembly 23573266 23574104 7133 7971 NC_060934.1 JAKCWS010000252.1 99.88 True indel: indel (<= 5bp) 23574106 23578477 7972 12343 NC_060934.1 JAKCWS010000252.1 99.59 True indel: indel (> 5bp) 23578485 23579808 12344 13667 NC_060934.1 JAKCWS010000252.1 99.92 True indel: indel (<= 5bp) 23579809 23586498 13670 20359 NC_060934.1 JAKCWS010000252.1 99.66 True indel: indel (> 5bp) 23586507 23589560 20360 23413 NC_060934.1 JAKCWS010000252.1 99.8 True indel: indel (> 5bp) 23589813 23590829 23672 24688 NC_060934.1 JAKCWS010000252.1 99.02 True indel: indel (<= 5bp) 23590830 23597280 24693 31143 NC_060934.1 JAKCWS010000252.1 99.6 True indel: indel (<= 5bp) 23597282 23600326 31144 34188 NC_060934.1 JAKCWS010000252.1 99.74 True indel: indel (<= 5bp) 23600328 23602037 34189 35898 NC_060934.1 JAKCWS010000252.1 99.82 True indel: indel (<= 5bp) 23602040 23603873 35899 37732 NC_060934.1 JAKCWS010000252.1 99.78 True indel: indel (<= 5bp) 23603874 23607595 37734 41455 NC_060934.1 JAKCWS010000252.1 99.87 True CONTIG JAKCWS010000252.1 41560 correct 49433092 49433797 1 706 NC_060929.1 JAKCWS010000253.1 97.61 True local misassembly 49430738 49433635 707 3600 NC_060929.1 JAKCWS010000253.1 98.27 True relocation, inconsistency = -97152 49336484 49337970 3601 5086 NC_060929.1 JAKCWS010000253.1 97.63 True relocation, inconsistency = -645825 48692146 48694139 5087 7080 NC_060929.1 JAKCWS010000253.1 98.65 True relocation, inconsistency = -1122829 47574245 47575976 10015 11744 NC_060929.1 JAKCWS010000253.1 97.78 True relocation, inconsistency = 1740112 49316089 49318221 11745 13876 NC_060929.1 JAKCWS010000253.1 98.03 True local misassembly 49325092 49327392 14294 16595 NC_060929.1 JAKCWS010000253.1 98.31 True local misassembly 49333524 49335886 16952 19314 NC_060929.1 JAKCWS010000253.1 98.1 True relocation, inconsistency = 66918 49403162 49409121 19672 25629 NC_060929.1 JAKCWS010000253.1 98.27 True relocation, inconsistency = -8155 49403160 49405383 27823 30046 NC_060929.1 JAKCWS010000253.1 98.38 True relocation, inconsistency = 87649 49494526 49496911 31540 33926 NC_060929.1 JAKCWS010000253.1 98.37 True relocation, inconsistency = -99542 49397930 49399408 34487 35966 NC_060929.1 JAKCWS010000253.1 98.58 True local misassembly 49403138 49405383 36300 38545 NC_060929.1 JAKCWS010000253.1 98.4 True relocation, inconsistency = 168868 49574385 49575394 38679 39688 NC_060929.1 JAKCWS010000253.1 97.62 True CONTIG JAKCWS010000253.1 41491 misassembled 58358673 58398403 10 40749 NC_060930.1 JAKCWS010000254.1 96.1 True CONTIG JAKCWS010000254.1 40749 correct 44389970 44392378 1 2410 NC_060932.1 JAKCWS010000255.1 99.38 True local misassembly 44389830 44398024 2411 10610 NC_060932.1 JAKCWS010000255.1 99.39 True local misassembly 44392929 44394927 10611 12610 NC_060932.1 JAKCWS010000255.1 99.39 True local misassembly 44389830 44398024 12611 20810 NC_060932.1 JAKCWS010000255.1 99.35 True local misassembly 44392929 44394927 20811 22810 NC_060932.1 JAKCWS010000255.1 99.35 True local misassembly 44389830 44398024 22811 31010 NC_060932.1 JAKCWS010000255.1 99.32 True local misassembly 44392929 44394927 31011 33009 NC_060932.1 JAKCWS010000255.1 99.37 True local misassembly 44389830 44397490 33010 40674 NC_060932.1 JAKCWS010000255.1 99.31 True CONTIG JAKCWS010000255.1 40714 correct 32642987 32644103 1 1117 NC_060944.1 JAKCWS010000256.1 99.28 True local misassembly 32644924 32645486 2038 2600 NC_060944.1 JAKCWS010000256.1 98.76 True local misassembly 32647416 32647915 4566 5065 NC_060944.1 JAKCWS010000256.1 98.8 True local misassembly 32649429 32650603 6529 7703 NC_060944.1 JAKCWS010000256.1 99.74 True local misassembly 32651490 32652057 8620 9187 NC_060944.1 JAKCWS010000256.1 100.0 True local misassembly 32653303 32657171 10407 14235 NC_060944.1 JAKCWS010000256.1 95.02 True relocation, inconsistency = 55559 32715345 32717173 16850 18663 NC_060944.1 JAKCWS010000256.1 98.69 True relocation, inconsistency = -107498 32613822 32631586 22810 40639 NC_060944.1 JAKCWS010000256.1 99.18 True CONTIG JAKCWS010000256.1 40639 misassembled 5593718 5634197 1 40492 NC_060946.1 JAKCWS010000257.1 99.29 True CONTIG JAKCWS010000257.1 40492 correct 4816173 4820470 1 4185 NC_060945.1 JAKCWS010000258.1 96.05 True local misassembly 4821184 4847527 4905 31337 NC_060945.1 JAKCWS010000258.1 98.61 True indel: indel (> 5bp) 4847659 4856582 31453 40377 NC_060945.1 JAKCWS010000258.1 99.23 True CONTIG JAKCWS010000258.1 40377 correct 7489858 7490641 489 1272 NC_060938.1 JAKCWS010000259.1 97.83 True local misassembly 7492250 7493945 3726 5421 NC_060938.1 JAKCWS010000259.1 98.53 True local misassembly 7494429 7497078 6075 8724 NC_060938.1 JAKCWS010000259.1 99.09 True indel: indel (<= 5bp) 7497534 7500836 9178 12480 NC_060938.1 JAKCWS010000259.1 99.12 True local misassembly 7501648 7502343 13632 14327 NC_060938.1 JAKCWS010000259.1 99.43 True indel: indel (<= 5bp) 7502344 7505187 14329 17172 NC_060938.1 JAKCWS010000259.1 98.91 True local misassembly 7505188 7508261 17344 20417 NC_060938.1 JAKCWS010000259.1 98.93 True relocation, inconsistency = -20664 7487598 7488509 20418 21329 NC_060938.1 JAKCWS010000259.1 99.02 True indel: indel (<= 5bp) 7488510 7491353 21331 24174 NC_060938.1 JAKCWS010000259.1 98.95 True local misassembly 7487598 7488509 24175 25086 NC_060938.1 JAKCWS010000259.1 99.02 True indel: indel (<= 5bp) 7488510 7490870 25088 27448 NC_060938.1 JAKCWS010000259.1 98.81 True local misassembly 7493947 7497078 27449 30580 NC_060938.1 JAKCWS010000259.1 99.2 True indel: indel (<= 5bp) 7497080 7499444 30581 32945 NC_060938.1 JAKCWS010000259.1 98.82 True local misassembly 7495767 7497078 33026 34337 NC_060938.1 JAKCWS010000259.1 99.31 True indel: indel (<= 5bp) 7497080 7497731 34338 34989 NC_060938.1 JAKCWS010000259.1 98.47 True indel: stretch of mismatches 7497823 7498572 35081 35830 NC_060938.1 JAKCWS010000259.1 99.33 True indel: indel (<= 5bp) 7498574 7500047 35831 37304 NC_060938.1 JAKCWS010000259.1 98.71 True local misassembly 7506930 7507778 37698 38546 NC_060938.1 JAKCWS010000259.1 98.12 True local misassembly 7508472 7509180 39239 39947 NC_060938.1 JAKCWS010000259.1 98.45 True CONTIG JAKCWS010000259.1 40320 misassembled 4406709 4420039 1 13355 NC_060945.1 JAKCWS010000260.1 99.4 True local misassembly 4420291 4421005 13498 14197 NC_060945.1 JAKCWS010000260.1 95.68 True local misassembly 4421719 4446894 14921 40153 NC_060945.1 JAKCWS010000260.1 98.76 True CONTIG JAKCWS010000260.1 40153 correct 5486596 5526648 14 40130 NC_060945.1 JAKCWS010000261.1 99.05 True CONTIG JAKCWS010000261.1 40130 correct 3192479 3209288 16842 1 NC_060939.1 JAKCWS010000262.1 99.21 True translocation 5296697 5319995 40111 16843 NC_060946.1 JAKCWS010000262.1 99.73 True CONTIG JAKCWS010000262.1 40111 misassembled 2566552 2604355 1 37817 NC_060938.1 JAKCWS010000263.1 99.25 True translocation 2736634 2738923 37818 40096 NC_060939.1 JAKCWS010000263.1 99.05 True CONTIG JAKCWS010000263.1 40101 misassembled 19295744 19297503 1760 1 NC_060942.1 JAKCWS010000264.1 96.25 True local misassembly 19279359 19298116 20180 1761 NC_060942.1 JAKCWS010000264.1 98.14 True relocation, inconsistency = -27803 19300377 19307161 26965 20181 NC_060942.1 JAKCWS010000264.1 99.82 True local misassembly 19303237 19304446 28175 26966 NC_060942.1 JAKCWS010000264.1 99.74 True local misassembly 19300264 19305271 33183 28176 NC_060942.1 JAKCWS010000264.1 99.82 True relocation, inconsistency = 7119 19286407 19293032 39921 33296 NC_060942.1 JAKCWS010000264.1 99.94 True CONTIG JAKCWS010000264.1 39932 misassembled 50042413 50046918 1 4506 NC_060928.1 JAKCWS010000265.1 99.0 True local misassembly 50040455 50050989 4507 15035 NC_060928.1 JAKCWS010000265.1 99.1 True local misassembly 50044526 50046918 15036 17426 NC_060928.1 JAKCWS010000265.1 99.07 True local misassembly 50040455 50050989 17427 27955 NC_060928.1 JAKCWS010000265.1 99.09 True local misassembly 50044526 50046918 27956 30346 NC_060928.1 JAKCWS010000265.1 99.03 True local misassembly 50040455 50049700 30347 39587 NC_060928.1 JAKCWS010000265.1 98.79 True CONTIG JAKCWS010000265.1 39587 correct 4937779 4952659 19 14943 NC_060945.1 JAKCWS010000266.1 99.05 True local misassembly 4952909 4953625 15084 15785 NC_060945.1 JAKCWS010000266.1 95.69 True local misassembly 4954339 4977171 16505 39429 NC_060945.1 JAKCWS010000266.1 98.63 True CONTIG JAKCWS010000266.1 39429 correct 9196287 9215182 1 18950 NC_060937.1 JAKCWS010000267.1 99.29 True local misassembly 9216665 9236794 18951 39136 NC_060937.1 JAKCWS010000267.1 98.92 True CONTIG JAKCWS010000267.1 39136 correct 5595695 5634749 1 39110 NC_060946.1 JAKCWS010000268.1 99.36 True CONTIG JAKCWS010000268.1 39110 correct 100164629 100181815 17191 4 NC_060938.1 JAKCWS010000269.1 99.49 True indel: indel (<= 5bp) 100157180 100164596 24714 17221 NC_060938.1 JAKCWS010000269.1 97.39 True relocation, inconsistency = 20986 100121900 100136188 39008 24720 NC_060938.1 JAKCWS010000269.1 99.92 True CONTIG JAKCWS010000269.1 39008 misassembled 44353009 44356531 3524 2 NC_060932.1 JAKCWS010000270.1 99.34 True local misassembly 44353009 44358104 8623 3525 NC_060932.1 JAKCWS010000270.1 99.34 True local misassembly 44351252 44358104 15481 8624 NC_060932.1 JAKCWS010000270.1 99.37 True local misassembly 44353009 44356348 18823 15482 NC_060932.1 JAKCWS010000270.1 99.37 True local misassembly 44342414 44351814 28231 18824 NC_060932.1 JAKCWS010000270.1 99.31 True local misassembly 44342978 44347511 32767 28232 NC_060932.1 JAKCWS010000270.1 99.42 True local misassembly 44342414 44348074 38428 32768 NC_060932.1 JAKCWS010000270.1 99.29 True local misassembly 44348137 44348704 38997 38429 NC_060932.1 JAKCWS010000270.1 99.24 True CONTIG JAKCWS010000270.1 38997 correct 25041026 25079931 1 38906 NC_060942.1 JAKCWS010000271.1 99.77 True CONTIG JAKCWS010000271.1 38906 correct 4626209 4665002 1 38792 NC_060939.1 JAKCWS010000272.1 99.33 True CONTIG JAKCWS010000272.1 38795 correct 5596726 5635208 1 38548 NC_060946.1 JAKCWS010000273.1 99.32 True CONTIG JAKCWS010000273.1 38548 correct 7339100 7341439 2287 1 NC_060937.1 JAKCWS010000274.1 98.06 True translocation 2436998 2472412 37728 2288 NC_060938.1 JAKCWS010000274.1 99.47 True CONTIG JAKCWS010000274.1 37744 misassembled 4561732 4599284 37550 1 NC_060945.1 JAKCWS010000275.1 98.97 True CONTIG JAKCWS010000275.1 37559 correct 9215582 9217120 1559 24 NC_060937.1 JAKCWS010000276.1 98.55 True translocation 2259448 2295324 37421 1560 NC_060938.1 JAKCWS010000276.1 99.62 True CONTIG JAKCWS010000276.1 37421 misassembled 5593513 5630813 1 37333 NC_060946.1 JAKCWS010000277.1 99.29 True CONTIG JAKCWS010000277.1 37333 correct 58476132 58507479 31365 1 NC_060931.1 JAKCWS010000278.1 98.31 True local misassembly 58472398 58478241 37224 31366 NC_060931.1 JAKCWS010000278.1 98.75 True CONTIG JAKCWS010000278.1 37224 correct 49457293 49462202 4920 7 NC_060929.1 JAKCWS010000279.1 97.98 True local misassembly 49457307 49462724 10342 4921 NC_060929.1 JAKCWS010000279.1 97.8 True local misassembly 49456085 49462738 17000 10343 NC_060929.1 JAKCWS010000279.1 97.81 True local misassembly 49457307 49461518 21214 17001 NC_060929.1 JAKCWS010000279.1 97.79 True local misassembly 49456085 49462738 27872 21215 NC_060929.1 JAKCWS010000279.1 97.76 True local misassembly 49458666 49461518 30727 27873 NC_060929.1 JAKCWS010000279.1 97.64 True local misassembly 49456855 49462738 36615 30728 NC_060929.1 JAKCWS010000279.1 97.98 True CONTIG JAKCWS010000279.1 37063 correct 58359943 58369293 7 9349 NC_060930.1 JAKCWS010000280.1 98.09 True indel: indel (<= 5bp) 58369375 58396988 9432 37041 NC_060930.1 JAKCWS010000280.1 98.71 True CONTIG JAKCWS010000280.1 37041 correct 54779409 54793108 13699 1 NC_060935.1 JAKCWS010000281.1 99.52 True translocation 116871561 116894239 36396 13700 NC_060933.1 JAKCWS010000281.1 99.86 True CONTIG JAKCWS010000281.1 36396 misassembled 9286725 9322853 36340 76 NC_060937.1 JAKCWS010000282.1 98.93 True CONTIG JAKCWS010000282.1 36340 correct 9267507 9293097 25645 1 NC_060937.1 JAKCWS010000283.1 98.92 True local misassembly 9261460 9271903 36151 25646 NC_060937.1 JAKCWS010000283.1 98.79 True CONTIG JAKCWS010000283.1 36151 correct 5274768 5303338 28385 1 NC_060946.1 JAKCWS010000284.1 98.65 True translocation 3188322 3190627 30672 28386 NC_060939.1 JAKCWS010000284.1 99.15 True indel: indel (> 5bp) 3182885 3188190 35998 30792 NC_060939.1 JAKCWS010000284.1 96.63 True CONTIG JAKCWS010000284.1 35998 misassembled 58338340 58374304 1 35922 NC_060930.1 JAKCWS010000285.1 97.36 True CONTIG JAKCWS010000285.1 35924 correct 38855121 38890915 1 35713 NC_060943.1 JAKCWS010000286.1 98.96 True CONTIG JAKCWS010000286.1 35723 correct 2692686 2722336 29653 1 NC_060938.1 JAKCWS010000287.1 98.81 True translocation 9255061 9260919 35527 29654 NC_060937.1 JAKCWS010000287.1 98.72 True CONTIG JAKCWS010000287.1 35527 misassembled 5595636 5631058 1 35432 NC_060946.1 JAKCWS010000288.1 99.4 True CONTIG JAKCWS010000288.1 35432 correct 5594991 5630363 35410 1 NC_060946.1 JAKCWS010000289.1 99.28 True CONTIG JAKCWS010000289.1 35410 correct 5594869 5630031 1 35194 NC_060946.1 JAKCWS010000290.1 99.31 True CONTIG JAKCWS010000290.1 35194 correct 5592851 5627474 34661 1 NC_060946.1 JAKCWS010000291.1 99.19 True CONTIG JAKCWS010000291.1 34681 correct 5527323 5529353 1 2036 NC_060945.1 JAKCWS010000292.1 98.84 True translocation 4040554 4073128 2037 34362 NC_060939.1 JAKCWS010000292.1 98.46 True CONTIG JAKCWS010000292.1 34362 misassembled 103464622 103498959 1 34337 NC_060925.1 JAKCWS010000293.1 99.99 True CONTIG JAKCWS010000293.1 34337 correct 58362467 58396705 1 34236 NC_060930.1 JAKCWS010000294.1 98.5 True CONTIG JAKCWS010000294.1 34236 correct 9222696 9256828 34141 1 NC_060937.1 JAKCWS010000295.1 99.6 True CONTIG JAKCWS010000295.1 34141 correct 5091504 5124979 33531 37 NC_060945.1 JAKCWS010000296.1 99.15 True CONTIG JAKCWS010000296.1 33531 correct 36064780 36086736 463 22398 NC_060940.1 JAKCWS010000297.1 98.65 True relocation, inconsistency = -49154 36037583 36038682 22399 23498 NC_060940.1 JAKCWS010000297.1 98.96 True local misassembly 36033259 36043147 23499 33394 NC_060940.1 JAKCWS010000297.1 99.12 True CONTIG JAKCWS010000297.1 33394 misassembled 5592703 5625695 1 33028 NC_060946.1 JAKCWS010000298.1 99.19 True CONTIG JAKCWS010000298.1 33028 correct 2498175 2501046 2828 1 NC_060938.1 JAKCWS010000299.1 99.19 True translocation 4894057 4924086 32898 2829 NC_060946.1 JAKCWS010000299.1 99.39 True CONTIG JAKCWS010000299.1 32898 misassembled 4204149 4236897 1 32769 NC_060939.1 JAKCWS010000300.1 99.18 True CONTIG JAKCWS010000300.1 32769 correct 51477137 51509472 8 32339 NC_060937.1 JAKCWS010000301.1 99.72 True CONTIG JAKCWS010000301.1 32339 correct 2519956 2552450 1 32320 NC_060938.1 JAKCWS010000302.1 98.6 True CONTIG JAKCWS010000302.1 32320 correct 11026092 11037307 15 11229 NC_060945.1 JAKCWS010000303.1 97.36 True local misassembly 11032717 11053382 11230 32240 NC_060945.1 JAKCWS010000303.1 97.34 True CONTIG JAKCWS010000303.1 32240 correct 37110321 37120218 1 9898 NC_060940.1 JAKCWS010000304.1 99.86 True relocation, inconsistency = -18689 37101530 37112391 9899 20753 NC_060940.1 JAKCWS010000304.1 99.83 True translocation 62700976 62706924 20816 26764 NC_060931.1 JAKCWS010000304.1 99.7 True local misassembly 62714762 62718795 28200 32233 NC_060931.1 JAKCWS010000304.1 99.95 True CONTIG JAKCWS010000304.1 32233 misassembled 14916902 14948971 32126 1 NC_060940.1 JAKCWS010000305.1 99.54 True CONTIG JAKCWS010000305.1 32126 correct 57975497 58007621 1 32125 NC_060948.1 JAKCWS010000306.1 100.0 True CONTIG JAKCWS010000306.1 32125 correct 40896745 40903311 1 6567 NC_060948.1 JAKCWS010000307.1 99.75 True relocation, inconsistency = 10395933 51299245 51324796 6568 32119 NC_060948.1 JAKCWS010000307.1 99.86 True CONTIG JAKCWS010000307.1 32119 misassembled 58163200 58195241 1 32043 NC_060948.1 JAKCWS010000308.1 99.99 True CONTIG JAKCWS010000308.1 32043 correct 4021585 4040896 13 19361 NC_060939.1 JAKCWS010000309.1 99.22 True translocation 9170363 9182330 19670 31650 NC_060937.1 JAKCWS010000309.1 98.51 True CONTIG JAKCWS010000309.1 31650 misassembled 5491727 5513299 1 21596 NC_060945.1 JAKCWS010000310.1 98.94 True indel: indel (> 5bp) 5513435 5523352 21712 31622 NC_060945.1 JAKCWS010000310.1 99.24 True CONTIG JAKCWS010000310.1 31622 correct 23571164 23573265 1 2102 NC_060934.1 JAKCWS010000311.1 99.9 True local misassembly 23573266 23574104 5541 6379 NC_060934.1 JAKCWS010000311.1 99.88 True indel: indel (<= 5bp) 23574106 23578477 6380 10751 NC_060934.1 JAKCWS010000311.1 99.59 True indel: indel (> 5bp) 23578485 23579808 10752 12075 NC_060934.1 JAKCWS010000311.1 99.92 True indel: indel (<= 5bp) 23579809 23586498 12078 18767 NC_060934.1 JAKCWS010000311.1 99.66 True indel: indel (> 5bp) 23586507 23589560 18768 21821 NC_060934.1 JAKCWS010000311.1 99.84 True indel: indel (> 5bp) 23589813 23590829 22080 23096 NC_060934.1 JAKCWS010000311.1 99.02 True indel: indel (<= 5bp) 23590830 23597280 23101 29551 NC_060934.1 JAKCWS010000311.1 99.6 True indel: indel (<= 5bp) 23597282 23599191 29552 31461 NC_060934.1 JAKCWS010000311.1 99.69 True CONTIG JAKCWS010000311.1 31461 correct 4130412 4159422 28757 1 NC_060939.1 JAKCWS010000312.1 98.28 True translocation 5526726 5529353 31383 28758 NC_060945.1 JAKCWS010000312.1 98.8 True CONTIG JAKCWS010000312.1 31383 misassembled 5600514 5631880 31383 1 NC_060946.1 JAKCWS010000313.1 99.34 True CONTIG JAKCWS010000313.1 31383 correct 59211708 59242960 1 31253 NC_060948.1 JAKCWS010000314.1 100.0 True CONTIG JAKCWS010000314.1 31253 correct 4191823 4222742 30975 1 NC_060945.1 JAKCWS010000315.1 98.76 True CONTIG JAKCWS010000315.1 30975 correct 35253239 35270478 17235 1 NC_060946.1 JAKCWS010000316.1 99.95 True translocation 54281837 54295494 17266 30923 NC_060938.1 JAKCWS010000316.1 99.99 True CONTIG JAKCWS010000316.1 30923 misassembled 59156135 59186875 30741 1 NC_060948.1 JAKCWS010000317.1 100.0 True CONTIG JAKCWS010000317.1 30741 correct 81639492 81670070 30625 40 NC_060939.1 JAKCWS010000318.1 99.78 True CONTIG JAKCWS010000318.1 30625 correct 5483537 5484070 1 534 NC_060945.1 JAKCWS010000319.1 100.0 True indel: indel (> 5bp) 5484470 5485307 941 1778 NC_060945.1 JAKCWS010000319.1 98.33 True local misassembly 5485495 5486104 1859 2468 NC_060945.1 JAKCWS010000319.1 97.54 True indel: indel (> 5bp) 5486219 5486827 2574 3182 NC_060945.1 JAKCWS010000319.1 97.54 True indel: indel (<= 5bp) 5486959 5513299 3319 29753 NC_060945.1 JAKCWS010000319.1 98.68 True CONTIG JAKCWS010000319.1 30391 correct 5548360 5574472 1 26144 NC_060945.1 JAKCWS010000320.1 99.45 True translocation 9170363 9174220 26453 30332 NC_060937.1 JAKCWS010000320.1 97.77 True CONTIG JAKCWS010000320.1 30332 misassembled 4079961 4110161 30170 1 NC_060945.1 JAKCWS010000321.1 99.18 True CONTIG JAKCWS010000321.1 30170 correct 5595286 5625402 30166 1 NC_060946.1 JAKCWS010000322.1 99.35 True CONTIG JAKCWS010000322.1 30166 correct 9215132 9245223 1 30087 NC_060937.1 JAKCWS010000323.1 99.15 True CONTIG JAKCWS010000323.1 30089 correct 9231556 9261566 1 30024 NC_060937.1 JAKCWS010000324.1 99.71 True CONTIG JAKCWS010000324.1 30024 correct 4807584 4837401 1 29876 NC_060946.1 JAKCWS010000325.1 99.55 True CONTIG JAKCWS010000325.1 29876 correct 2744668 2774385 1 29833 NC_060938.1 JAKCWS010000326.1 99.29 True CONTIG JAKCWS010000326.1 29854 correct 49458652 49461759 3112 1 NC_060929.1 JAKCWS010000327.1 97.89 True local misassembly 49457307 49462724 8534 3113 NC_060929.1 JAKCWS010000327.1 97.86 True local misassembly 49456085 49462738 15192 8535 NC_060929.1 JAKCWS010000327.1 97.85 True local misassembly 49457307 49461518 19406 15193 NC_060929.1 JAKCWS010000327.1 97.84 True local misassembly 49456085 49462738 26064 19407 NC_060929.1 JAKCWS010000327.1 97.84 True local misassembly 49456529 49460161 29697 26065 NC_060929.1 JAKCWS010000327.1 97.81 True CONTIG JAKCWS010000327.1 29697 correct 80540888 80542409 4580 3059 NC_060942.1 JAKCWS010000335.1 98.42 True translocation 3009 48156 5896 51066 NC_060945.1 JAKCWS010000335.1 99.62 True translocation, scaffold gap is present 27786 88621 51080 111634 NC_060946.1 JAKCWS010000335.1 98.76 True translocation 100185 101146 112178 113139 NC_060945.1 JAKCWS010000335.1 99.06 True local misassembly 101435 102147 113140 113852 NC_060945.1 JAKCWS010000335.1 98.46 True local misassembly 102148 104551 113997 116400 NC_060945.1 JAKCWS010000335.1 99.63 True indel: indel (<= 5bp) 104556 107146 116401 118991 NC_060945.1 JAKCWS010000335.1 99.69 True indel: indel (> 5bp) 107159 108582 118992 120415 NC_060945.1 JAKCWS010000335.1 98.81 True local misassembly 108871 109583 120416 121128 NC_060945.1 JAKCWS010000335.1 98.74 True local misassembly 109584 111987 121273 123676 NC_060945.1 JAKCWS010000335.1 99.67 True indel: indel (<= 5bp) 111992 114576 123677 126261 NC_060945.1 JAKCWS010000335.1 99.61 True indel: indel (<= 5bp) 114579 116018 126262 127701 NC_060945.1 JAKCWS010000335.1 98.96 True local misassembly 116307 117091 127702 128486 NC_060945.1 JAKCWS010000335.1 98.47 True relocation, scaffold gap is present, inconsistency = 18213 135884 152927 129066 146071 NC_060945.1 JAKCWS010000335.1 99.09 True relocation, inconsistency = -126449 27054 49197 146647 168807 NC_060945.1 JAKCWS010000335.1 99.7 True translocation, scaffold gap is present 22187 62319 186979 227142 NC_060938.1 JAKCWS010000335.1 99.25 True relocation, inconsistency = -56526 5794 271793 227143 492732 NC_060938.1 JAKCWS010000335.1 99.23 True relocation, inconsistency = 152629 424423 425910 492733 494220 NC_060938.1 JAKCWS010000335.1 95.61 True local misassembly 430135 449480 494221 513501 NC_060938.1 JAKCWS010000335.1 95.08 True local misassembly 444106 446629 513502 516025 NC_060938.1 JAKCWS010000335.1 99.93 True local misassembly 446758 447728 516026 516996 NC_060938.1 JAKCWS010000335.1 99.79 True local misassembly 447729 448293 517445 518009 NC_060938.1 JAKCWS010000335.1 97.35 True indel: indel (<= 5bp) 448294 450033 518011 519750 NC_060938.1 JAKCWS010000335.1 99.89 True local misassembly 450226 453873 519751 523398 NC_060938.1 JAKCWS010000335.1 99.92 True relocation, inconsistency = 36539 490413 491873 523399 524859 NC_060938.1 JAKCWS010000335.1 97.26 True indel: indel (> 5bp) 491874 492893 524924 525943 NC_060938.1 JAKCWS010000335.1 98.04 True local misassembly 493766 496260 526367 528861 NC_060938.1 JAKCWS010000335.1 96.79 True local misassembly 496865 499461 529208 531804 NC_060938.1 JAKCWS010000335.1 97.34 True relocation, inconsistency = 81082 580544 581719 531805 532980 NC_060938.1 JAKCWS010000335.1 98.04 True indel: indel (> 5bp) 581784 583622 532981 534819 NC_060938.1 JAKCWS010000335.1 99.24 True local misassembly 584071 585094 534820 535843 NC_060938.1 JAKCWS010000335.1 97.27 True local misassembly 585095 588224 535972 539101 NC_060938.1 JAKCWS010000335.1 97.41 True local misassembly 582044 582872 539195 540023 NC_060938.1 JAKCWS010000335.1 97.35 True indel: indel (> 5bp) 582938 583960 540024 541046 NC_060938.1 JAKCWS010000335.1 98.74 True local misassembly 589977 592262 541047 543332 NC_060938.1 JAKCWS010000335.1 97.68 True local misassembly 592647 595771 543333 546457 NC_060938.1 JAKCWS010000335.1 96.96 True local misassembly 595964 597080 546458 547574 NC_060938.1 JAKCWS010000335.1 99.55 True indel: indel (> 5bp) 597145 598075 547575 548505 NC_060938.1 JAKCWS010000335.1 99.57 True local misassembly 598076 598731 548634 549289 NC_060938.1 JAKCWS010000335.1 96.95 True indel: indel (> 5bp) 598732 600862 549354 551484 NC_060938.1 JAKCWS010000335.1 96.95 True relocation, inconsistency = -7488 593375 593926 551485 552036 NC_060938.1 JAKCWS010000335.1 97.65 True local misassembly 593927 594791 552165 553029 NC_060938.1 JAKCWS010000335.1 97.69 True local misassembly 594792 596347 553158 554713 NC_060938.1 JAKCWS010000335.1 97.43 True local misassembly 596348 596952 554906 555510 NC_060938.1 JAKCWS010000335.1 97.85 True local misassembly 597081 598247 555511 556677 NC_060938.1 JAKCWS010000335.1 97.24 True relocation, inconsistency = 24960 623208 628263 556678 561733 NC_060938.1 JAKCWS010000335.1 97.15 True indel: indel (> 5bp) 628264 628811 561798 562345 NC_060938.1 JAKCWS010000335.1 97.08 True indel: stretch of mismatches 629096 632262 562630 565796 NC_060938.1 JAKCWS010000335.1 97.32 True indel: indel (> 5bp) 632263 632920 565861 566518 NC_060938.1 JAKCWS010000335.1 98.78 True local misassembly 632921 633727 566839 567645 NC_060938.1 JAKCWS010000335.1 99.28 True relocation, inconsistency = -231276 402452 403759 567646 568953 NC_060938.1 JAKCWS010000335.1 97.4 True indel: indel (> 5bp) 403824 407212 568954 572342 NC_060938.1 JAKCWS010000335.1 98.61 True indel: indel (> 5bp) 407277 407907 572343 572973 NC_060938.1 JAKCWS010000335.1 96.83 True relocation, inconsistency = -21119 386789 387499 572974 573684 NC_060938.1 JAKCWS010000335.1 96.77 True indel: indel (> 5bp) 387500 388785 573749 575034 NC_060938.1 JAKCWS010000335.1 97.51 True local misassembly 388786 390959 575163 577336 NC_060938.1 JAKCWS010000335.1 99.26 True local misassembly 391088 393565 577337 579814 NC_060938.1 JAKCWS010000335.1 98.02 True indel: indel (> 5bp) 393566 394543 579879 580856 NC_060938.1 JAKCWS010000335.1 99.28 True indel: indel (> 5bp) 394544 397236 580921 583613 NC_060938.1 JAKCWS010000335.1 97.59 True relocation, inconsistency = 189485 586722 588440 583614 585332 NC_060938.1 JAKCWS010000335.1 97.08 True indel: indel (> 5bp) 588441 589287 585397 586243 NC_060938.1 JAKCWS010000335.1 98.23 True local misassembly 589288 590119 586372 587203 NC_060938.1 JAKCWS010000335.1 97.0 True indel: indel (> 5bp) 590429 591719 587579 588869 NC_060938.1 JAKCWS010000335.1 97.6 True local misassembly 592552 594334 589573 591355 NC_060938.1 JAKCWS010000335.1 96.75 True local misassembly 594335 594905 591548 592118 NC_060938.1 JAKCWS010000335.1 97.37 True indel: indel (<= 5bp) 594907 595422 592119 592634 NC_060938.1 JAKCWS010000335.1 97.67 True local misassembly 595679 596939 592635 593895 NC_060938.1 JAKCWS010000335.1 97.22 True indel: indel (> 5bp) 597004 598480 593896 595372 NC_060938.1 JAKCWS010000335.1 96.95 True indel: indel (<= 5bp) 598482 599216 595373 596107 NC_060938.1 JAKCWS010000335.1 97.28 True local misassembly 599409 601560 596108 598259 NC_060938.1 JAKCWS010000335.1 97.77 True local misassembly 601561 604697 598388 601524 NC_060938.1 JAKCWS010000335.1 97.1 True local misassembly 604698 606489 601781 603572 NC_060938.1 JAKCWS010000335.1 96.88 True indel: indel (> 5bp) 606630 609680 603776 606826 NC_060938.1 JAKCWS010000335.1 97.05 True relocation, inconsistency = -8447 601265 745309 606858 747788 NC_060938.1 JAKCWS010000335.1 95.77 True translocation 8456416 8457041 749063 748438 NC_060946.1 JAKCWS010000335.1 98.24 True local misassembly 8453599 8454141 751935 751393 NC_060946.1 JAKCWS010000335.1 98.53 True indel: indel (> 5bp) 8453058 8453588 752466 751936 NC_060946.1 JAKCWS010000335.1 98.68 True local misassembly 8451940 8452460 753484 752964 NC_060946.1 JAKCWS010000335.1 98.85 True local misassembly 8444836 8445681 760905 760060 NC_060946.1 JAKCWS010000335.1 98.58 True fake: not a misassembly (possible transposable element) 467837 474371 761646 768177 NC_060946.1 JAKCWS010000335.1 97.14 True fake: not a misassembly (possible transposable element) 8437613 8438447 769502 768668 NC_060946.1 JAKCWS010000335.1 98.44 True indel: indel (<= 5bp) 8437094 8437612 770026 769508 NC_060946.1 JAKCWS010000335.1 97.69 True translocation 755608 764494 771671 780540 NC_060938.1 JAKCWS010000335.1 96.45 True translocation 582345 584073 783445 785173 NC_060945.1 JAKCWS010000335.1 97.4 True local misassembly 584286 586115 785250 787079 NC_060945.1 JAKCWS010000335.1 96.67 True local misassembly 586388 588144 787216 788972 NC_060945.1 JAKCWS010000335.1 96.76 True local misassembly 588428 590400 789120 791092 NC_060945.1 JAKCWS010000335.1 96.55 True indel: indel (> 5bp) 590470 591746 791093 792369 NC_060945.1 JAKCWS010000335.1 97.65 True indel: indel (<= 5bp) 591748 592442 792370 793064 NC_060945.1 JAKCWS010000335.1 96.98 True indel: indel (> 5bp) 592512 594484 793065 795037 NC_060945.1 JAKCWS010000335.1 97.06 True indel: indel (> 5bp) 594554 595593 795038 796077 NC_060945.1 JAKCWS010000335.1 97.02 True indel: indel (> 5bp) 595594 596487 796147 797040 NC_060945.1 JAKCWS010000335.1 97.09 True indel: indel (> 5bp) 596557 598499 797041 798983 NC_060945.1 JAKCWS010000335.1 96.91 True indel: indel (> 5bp) 598569 600546 798984 800961 NC_060945.1 JAKCWS010000335.1 96.71 True relocation, inconsistency = -10345 590412 592442 801172 803202 NC_060945.1 JAKCWS010000335.1 97.44 True indel: indel (> 5bp) 592512 594484 803203 805175 NC_060945.1 JAKCWS010000335.1 97.36 True indel: indel (> 5bp) 594554 595582 805176 806204 NC_060945.1 JAKCWS010000335.1 97.67 True indel: indel (> 5bp) 595583 596399 806274 807090 NC_060945.1 JAKCWS010000335.1 97.06 True indel: indel (> 5bp) 596469 598499 807091 809121 NC_060945.1 JAKCWS010000335.1 96.21 True translocation 897181 902502 809474 814794 NC_060946.1 JAKCWS010000335.1 96.43 True relocation, inconsistency = 1218860 2121494 2125648 814926 819080 NC_060946.1 JAKCWS010000335.1 97.26 True indel: indel (> 5bp) 2125649 2126431 819149 819931 NC_060946.1 JAKCWS010000335.1 95.15 True indel: indel (<= 5bp) 2126433 2127038 819932 820537 NC_060946.1 JAKCWS010000335.1 96.53 True indel: indel (<= 5bp) 2127039 2127553 820539 821053 NC_060946.1 JAKCWS010000335.1 96.31 True indel: indel (> 5bp) 2127554 2128336 821122 821904 NC_060946.1 JAKCWS010000335.1 96.3 True indel: indel (<= 5bp) 2128338 2128893 821905 822460 NC_060946.1 JAKCWS010000335.1 96.51 True translocation 790599 795427 822461 827220 NC_060945.1 JAKCWS010000335.1 95.36 True local misassembly 791483 793785 827221 829523 NC_060945.1 JAKCWS010000335.1 96.55 True indel: indel (<= 5bp) 793786 795345 829526 831085 NC_060945.1 JAKCWS010000335.1 96.6 True translocation 854604 856576 831086 833058 NC_060939.1 JAKCWS010000335.1 95.95 True local misassembly 857115 858547 833599 835031 NC_060939.1 JAKCWS010000335.1 96.3 True indel: indel (<= 5bp) 858549 859608 835032 836091 NC_060939.1 JAKCWS010000335.1 96.13 True local misassembly 860523 861144 837004 837625 NC_060939.1 JAKCWS010000335.1 95.18 True translocation 929055 933961 842013 846986 NC_060946.1 JAKCWS010000335.1 95.58 True relocation, inconsistency = -245813 688277 689521 847115 848359 NC_060946.1 JAKCWS010000335.1 97.99 True indel: indel (<= 5bp) 689524 691199 848360 850035 NC_060946.1 JAKCWS010000335.1 97.37 True local misassembly 691449 693392 850422 852365 NC_060946.1 JAKCWS010000335.1 96.71 True translocation 804117 809263 852397 857612 NC_060939.1 JAKCWS010000335.1 95.82 True translocation 1768345 1771443 857742 860838 NC_060946.1 JAKCWS010000335.1 97.42 True translocation 757050 757733 860867 861549 NC_060939.1 JAKCWS010000335.1 96.65 True translocation 906875 924188 861550 879005 NC_060946.1 JAKCWS010000335.1 96.14 True relocation, inconsistency = 1197010 2121199 2125623 879006 883362 NC_060946.1 JAKCWS010000335.1 96.22 True relocation, inconsistency = -1422676 702948 706723 883363 887138 NC_060946.1 JAKCWS010000335.1 97.17 True relocation, inconsistency = 193945 901180 913188 887650 899657 NC_060946.1 JAKCWS010000335.1 96.01 True local misassembly 914124 916148 899706 901730 NC_060946.1 JAKCWS010000335.1 97.04 True indel: indel (<= 5bp) 916150 918933 901731 904514 NC_060946.1 JAKCWS010000335.1 97.63 True indel: indel (> 5bp) 918934 921443 904583 907092 NC_060946.1 JAKCWS010000335.1 96.85 True indel: indel (> 5bp) 921444 922125 907161 907842 NC_060946.1 JAKCWS010000335.1 97.51 True local misassembly 916749 918933 907843 910027 NC_060946.1 JAKCWS010000335.1 97.21 True local misassembly 924514 925530 910028 911044 NC_060946.1 JAKCWS010000335.1 97.4 True relocation, inconsistency = -405953 519578 527926 911045 919250 NC_060946.1 JAKCWS010000335.1 95.52 True relocation, inconsistency = 163407 691334 705438 919251 933415 NC_060946.1 JAKCWS010000335.1 95.38 True relocation, inconsistency = 198435 904089 905949 933631 935489 NC_060946.1 JAKCWS010000335.1 96.37 True relocation, inconsistency = 1205860 2111810 2125592 935490 949338 NC_060946.1 JAKCWS010000335.1 96.87 True translocation 788604 789429 949353 950178 NC_060945.1 JAKCWS010000335.1 96.13 True indel: indel (<= 5bp) 789701 791262 950451 952012 NC_060945.1 JAKCWS010000335.1 97.18 True indel: indel (> 5bp) 791773 793785 952456 954468 NC_060945.1 JAKCWS010000335.1 96.77 True indel: indel (<= 5bp) 793786 794984 954471 955669 NC_060945.1 JAKCWS010000335.1 96.91 True local misassembly 795745 797317 956361 957933 NC_060945.1 JAKCWS010000335.1 97.01 True local misassembly 798119 799173 958667 959721 NC_060945.1 JAKCWS010000335.1 96.11 True translocation 692096 693679 961042 962556 NC_060946.1 JAKCWS010000335.1 95.77 True relocation, inconsistency = -158849 534831 545389 962557 973178 NC_060946.1 JAKCWS010000335.1 96.23 True relocation, inconsistency = 151838 697443 701100 973394 977051 NC_060946.1 JAKCWS010000335.1 96.79 True relocation, inconsistency = 1005529 1706630 1727194 977052 998024 NC_060946.1 JAKCWS010000335.1 95.68 True relocation, inconsistency = -865072 862627 870043 998529 1005944 NC_060946.1 JAKCWS010000335.1 96.2 True relocation, inconsistency = 720884 1590928 1607532 1005945 1022547 NC_060946.1 JAKCWS010000335.1 96.94 True relocation, inconsistency = 166171 1773704 1779022 1022548 1028001 NC_060946.1 JAKCWS010000335.1 96.76 True relocation, inconsistency = -443510 1335673 1336346 1028162 1028835 NC_060946.1 JAKCWS010000335.1 97.5 True local misassembly 1338253 1360821 1028836 1051806 NC_060946.1 JAKCWS010000335.1 95.53 True relocation, inconsistency = 793202 2154657 2155629 1052440 1053412 NC_060946.1 JAKCWS010000335.1 95.27 True indel: indel (<= 5bp) 2155631 2157130 1053413 1054912 NC_060946.1 JAKCWS010000335.1 95.73 True local misassembly 2158605 2159577 1055908 1056880 NC_060946.1 JAKCWS010000335.1 95.68 True indel: indel (<= 5bp) 2159579 2161621 1056881 1058923 NC_060946.1 JAKCWS010000335.1 95.15 True local misassembly 2164828 2166219 1062197 1063588 NC_060946.1 JAKCWS010000335.1 96.26 True local misassembly 2166442 2167988 1064015 1065561 NC_060946.1 JAKCWS010000335.1 95.02 True local misassembly 2167989 2168733 1065767 1066511 NC_060946.1 JAKCWS010000335.1 95.17 True indel: indel (<= 5bp) 2168734 2169934 1066513 1067713 NC_060946.1 JAKCWS010000335.1 95.25 True indel: indel (> 5bp) 2169935 2170637 1067783 1068485 NC_060946.1 JAKCWS010000335.1 95.31 True indel: indel (<= 5bp) 2170638 2172096 1068487 1069945 NC_060946.1 JAKCWS010000335.1 95.07 True relocation, inconsistency = 19532 2191800 2194339 1070117 1072656 NC_060946.1 JAKCWS010000335.1 95.87 True indel: indel (<= 5bp) 2194340 2196610 1072658 1074928 NC_060946.1 JAKCWS010000335.1 96.39 True relocation, inconsistency = -10482 2186129 2187130 1074929 1075930 NC_060946.1 JAKCWS010000335.1 96.91 True local misassembly 2187870 2188619 1076669 1077418 NC_060946.1 JAKCWS010000335.1 98.0 True relocation, inconsistency = 9531 2198180 2215340 1077448 1094537 NC_060946.1 JAKCWS010000335.1 96.46 True translocation 509880 510758 1094713 1095591 NC_060945.1 JAKCWS010000335.1 97.38 True indel: indel (<= 5bp) 510940 511787 1095771 1096618 NC_060945.1 JAKCWS010000335.1 96.93 True local misassembly 512330 514987 1097294 1099951 NC_060945.1 JAKCWS010000335.1 96.61 True local misassembly 515987 532745 1100745 1117577 NC_060945.1 JAKCWS010000335.1 98.48 True translocation 958558 970180 1117578 1129127 NC_060939.1 JAKCWS010000335.1 97.37 True indel: stretch of mismatches 970295 983674 1129242 1142629 NC_060939.1 JAKCWS010000335.1 97.74 True local misassembly 985445 1105099 1143235 1262888 NC_060939.1 JAKCWS010000335.1 99.08 True translocation 1147643 1148646 1263276 1264279 NC_060945.1 JAKCWS010000335.1 99.7 True local misassembly 1149642 1150311 1265265 1265934 NC_060945.1 JAKCWS010000335.1 99.85 True indel: indel (<= 5bp) 1150317 1150968 1265935 1266586 NC_060945.1 JAKCWS010000335.1 99.69 True fake: not a misassembly (possible transposable element) 1113109 1113689 1273867 1274447 NC_060939.1 JAKCWS010000335.1 99.48 True fake: not a misassembly (possible transposable element) 1155864 1156530 1275319 1275985 NC_060945.1 JAKCWS010000335.1 99.7 True local misassembly 1157871 1158669 1277496 1278294 NC_060945.1 JAKCWS010000335.1 99.12 True local misassembly 1159410 1160103 1278970 1279663 NC_060945.1 JAKCWS010000335.1 100.0 True fake: not a misassembly (possible transposable element) 1119725 1120375 1280563 1281213 NC_060939.1 JAKCWS010000335.1 99.39 True fake: not a misassembly (possible transposable element) 1163003 1163812 1282598 1283407 NC_060945.1 JAKCWS010000335.1 99.51 True local misassembly 1165096 1165969 1284681 1285554 NC_060945.1 JAKCWS010000335.1 99.66 True local misassembly 1168708 1169329 1288453 1289074 NC_060945.1 JAKCWS010000335.1 99.68 True indel: indel (<= 5bp) 1169585 1170147 1289335 1289897 NC_060945.1 JAKCWS010000335.1 99.47 True translocation 1135091 1136101 1294825 1295829 NC_060939.1 JAKCWS010000335.1 97.43 True local misassembly 1134817 1135401 1299283 1299882 NC_060939.1 JAKCWS010000335.1 95.67 True local misassembly 1136066 1138229 1301031 1303244 NC_060939.1 JAKCWS010000335.1 96.94 True translocation 1145787 1146326 1305402 1305941 NC_060945.1 JAKCWS010000335.1 99.44 True indel: indel (> 5bp) 1146671 1147637 1306251 1307217 NC_060945.1 JAKCWS010000335.1 99.9 True indel: indel (> 5bp) 1147989 1148789 1307549 1308349 NC_060945.1 JAKCWS010000335.1 99.75 True local misassembly 1149642 1150232 1309192 1309782 NC_060945.1 JAKCWS010000335.1 99.66 True indel: indel (<= 5bp) 1150238 1150968 1309783 1310513 NC_060945.1 JAKCWS010000335.1 99.73 True local misassembly 1153932 1154617 1313407 1314092 NC_060945.1 JAKCWS010000335.1 99.71 True local misassembly 1156903 1157546 1316353 1316996 NC_060945.1 JAKCWS010000335.1 99.69 True local misassembly 1159410 1160213 1319045 1319848 NC_060945.1 JAKCWS010000335.1 99.75 True local misassembly 1162604 1163429 1322299 1323124 NC_060945.1 JAKCWS010000335.1 99.64 True local misassembly 1164454 1165090 1324189 1324825 NC_060945.1 JAKCWS010000335.1 99.53 True indel: indel (<= 5bp) 1165091 1165690 1324831 1325430 NC_060945.1 JAKCWS010000335.1 99.67 True local misassembly 1168449 1170147 1328349 1330047 NC_060945.1 JAKCWS010000335.1 99.53 True relocation, inconsistency = -29302 1146931 1147477 1336133 1336679 NC_060945.1 JAKCWS010000335.1 97.44 True translocation 1136066 1139725 1338798 1342517 NC_060939.1 JAKCWS010000335.1 96.45 True local misassembly 1136654 1139725 1342518 1345654 NC_060939.1 JAKCWS010000335.1 95.71 True local misassembly 1136654 1137334 1345655 1346335 NC_060939.1 JAKCWS010000335.1 99.6 True local misassembly 1137959 1138540 1346980 1347561 NC_060939.1 JAKCWS010000335.1 99.66 True local misassembly 1139942 1140531 1348981 1349570 NC_060939.1 JAKCWS010000335.1 99.32 True local misassembly 1141105 1141849 1350569 1351313 NC_060939.1 JAKCWS010000335.1 99.6 True indel: indel (> 5bp) 1142138 1142880 1351617 1352359 NC_060939.1 JAKCWS010000335.1 99.33 True indel: indel (<= 5bp) 1143077 1143683 1352551 1353157 NC_060939.1 JAKCWS010000335.1 99.34 True local misassembly 1144169 1145692 1353493 1355016 NC_060939.1 JAKCWS010000335.1 99.67 True indel: indel (> 5bp) 1145693 1146376 1355037 1355720 NC_060939.1 JAKCWS010000335.1 99.71 True local misassembly 1147751 1148770 1357220 1358239 NC_060939.1 JAKCWS010000335.1 99.31 True local misassembly 1150054 1152192 1358785 1360898 NC_060939.1 JAKCWS010000335.1 98.09 True fake: not a misassembly (possible transposable element) 1152304 1158551 1369108 1375385 NC_060939.1 JAKCWS010000335.1 98.14 True fake: not a misassembly (possible transposable element) 1165606 1168420 1375386 1378185 NC_060939.1 JAKCWS010000335.1 96.77 True translocation 1180832 1181733 1378296 1379197 NC_060945.1 JAKCWS010000335.1 99.22 True translocation 1180263 1181328 1380635 1381700 NC_060939.1 JAKCWS010000335.1 99.06 True local misassembly 1182012 1182683 1382380 1383051 NC_060939.1 JAKCWS010000335.1 99.55 True local misassembly 1184060 1184747 1384433 1385120 NC_060939.1 JAKCWS010000335.1 98.69 True local misassembly 1192540 1221447 1386846 1415605 NC_060939.1 JAKCWS010000335.1 95.13 True local misassembly 1217589 1223285 1415606 1421342 NC_060939.1 JAKCWS010000335.1 97.24 True local misassembly 1220332 1220974 1421343 1421985 NC_060939.1 JAKCWS010000335.1 99.54 True local misassembly 1226449 1227173 1427470 1428194 NC_060939.1 JAKCWS010000335.1 99.03 True indel: indel (<= 5bp) 1227174 1228368 1428200 1429394 NC_060939.1 JAKCWS010000335.1 99.92 True indel: indel (<= 5bp) 1228374 1228878 1429395 1429899 NC_060939.1 JAKCWS010000335.1 98.81 True local misassembly 1229573 1231114 1430604 1432145 NC_060939.1 JAKCWS010000335.1 99.42 True local misassembly 1232197 1233017 1434223 1435043 NC_060939.1 JAKCWS010000335.1 99.76 True local misassembly 1233835 1234773 1435891 1436829 NC_060939.1 JAKCWS010000335.1 99.36 True indel: indel (> 5bp) 1235151 1238710 1437227 1440786 NC_060939.1 JAKCWS010000335.1 99.16 True local misassembly 1238711 1240052 1441375 1442716 NC_060939.1 JAKCWS010000335.1 99.33 True local misassembly 1240053 1241749 1442841 1444537 NC_060939.1 JAKCWS010000335.1 99.29 True local misassembly 1242126 1243232 1444538 1445644 NC_060939.1 JAKCWS010000335.1 99.1 True local misassembly 1243813 1245110 1445881 1447178 NC_060939.1 JAKCWS010000335.1 98.61 True translocation 1256321 1256942 1447429 1448050 NC_060945.1 JAKCWS010000335.1 96.78 True translocation 1238463 1240052 1448059 1449648 NC_060939.1 JAKCWS010000335.1 98.87 True local misassembly 1240053 1241749 1449773 1451469 NC_060939.1 JAKCWS010000335.1 99.47 True local misassembly 1242126 1243232 1451470 1452576 NC_060939.1 JAKCWS010000335.1 99.19 True local misassembly 1243813 1245066 1452813 1454066 NC_060939.1 JAKCWS010000335.1 98.64 True local misassembly 1245512 1247196 1454888 1456572 NC_060939.1 JAKCWS010000335.1 98.64 True translocation 4813476 4815035 1460907 1462467 NC_060937.1 JAKCWS010000335.1 97.25 True local misassembly 4813195 4813875 1462468 1463149 NC_060937.1 JAKCWS010000335.1 97.25 True relocation, inconsistency = -3065468 1748408 1749963 1463150 1464705 NC_060937.1 JAKCWS010000335.1 96.08 True local misassembly 1750169 1751360 1464706 1465897 NC_060937.1 JAKCWS010000335.1 96.06 True relocation, inconsistency = 675038 2426399 2426917 1465898 1466416 NC_060937.1 JAKCWS010000335.1 97.79 True local misassembly 2429274 2431408 1468903 1471040 NC_060937.1 JAKCWS010000335.1 95.42 True relocation, inconsistency = 1388798 3820351 3821466 1471185 1472300 NC_060937.1 JAKCWS010000335.1 95.97 True translocation 3017467 3018803 1475729 1477065 NC_060946.1 JAKCWS010000335.1 98.65 True relocation, inconsistency = 390101 3409446 3412115 1477607 1480271 NC_060946.1 JAKCWS010000335.1 96.86 True translocation 305114 306017 1481545 1482443 NC_060937.1 JAKCWS010000335.1 97.01 True relocation, inconsistency = 4517454 4823473 4827151 1482445 1486127 NC_060937.1 JAKCWS010000335.1 96.56 True translocation 1291373 1294162 1486992 1489775 NC_060945.1 JAKCWS010000335.1 98.57 True translocation 3396617 3399599 1490036 1493003 NC_060946.1 JAKCWS010000335.1 96.73 True translocation 3617184 3621285 1493004 1497095 NC_060937.1 JAKCWS010000335.1 97.0 True translocation 1307802 1310704 1497096 1500001 NC_060945.1 JAKCWS010000335.1 96.98 True translocation 1010765 1016733 1501034 1507002 NC_060937.1 JAKCWS010000335.1 96.47 True relocation, inconsistency = 3773294 4790142 4790963 1507117 1507938 NC_060937.1 JAKCWS010000335.1 95.86 True indel: indel (<= 5bp) 4790964 4791810 1507944 1508790 NC_060937.1 JAKCWS010000335.1 98.3 True translocation 1317555 1324637 1508791 1515872 NC_060945.1 JAKCWS010000335.1 97.35 True local misassembly 1324437 1329161 1516423 1521145 NC_060945.1 JAKCWS010000335.1 97.69 True translocation 4792145 4793211 1521146 1522211 NC_060937.1 JAKCWS010000335.1 97.23 True relocation, inconsistency = -246887 4546912 4551311 1522799 1527192 NC_060937.1 JAKCWS010000335.1 97.23 True translocation 1934133 1941775 1527367 1535007 NC_060945.1 JAKCWS010000335.1 97.97 True relocation, inconsistency = -92923 1848853 1853022 1535008 1539176 NC_060945.1 JAKCWS010000335.1 97.63 True translocation 3332331 3334046 1539767 1541482 NC_060937.1 JAKCWS010000335.1 96.04 True local misassembly 3334635 3335513 1542028 1542906 NC_060937.1 JAKCWS010000335.1 95.22 True relocation, inconsistency = 1607551 4943263 4947653 1543105 1547375 NC_060937.1 JAKCWS010000335.1 95.16 True relocation, inconsistency = -1646916 3300837 3302716 1547475 1549354 NC_060937.1 JAKCWS010000335.1 98.46 True local misassembly 3302717 3303320 1549728 1550331 NC_060937.1 JAKCWS010000335.1 98.68 True indel: indel (> 5bp) 3303363 3304031 1550332 1551000 NC_060937.1 JAKCWS010000335.1 98.21 True indel: indel (> 5bp) 3304116 3304862 1551079 1551825 NC_060937.1 JAKCWS010000335.1 95.05 True indel: indel (<= 5bp) 3304863 3306065 1551831 1553033 NC_060937.1 JAKCWS010000335.1 97.09 True indel: indel (<= 5bp) 3306137 3307408 1553107 1554378 NC_060937.1 JAKCWS010000335.1 97.09 True local misassembly 3302255 3307532 1554528 1559762 NC_060937.1 JAKCWS010000335.1 95.9 True relocation, inconsistency = 1238717 4546250 4546954 1559763 1560467 NC_060937.1 JAKCWS010000335.1 97.96 True translocation 1727321 1732686 1560989 1566350 NC_060945.1 JAKCWS010000335.1 96.91 True translocation 94783006 94784918 1566480 1568392 NC_060927.1 JAKCWS010000335.1 96.75 True translocation 1601967 1605149 1568393 1571565 NC_060945.1 JAKCWS010000335.1 97.14 True translocation 983807 986129 1571566 1573876 NC_060937.1 JAKCWS010000335.1 95.72 True relocation, inconsistency = -80071 906236 908356 1574054 1576170 NC_060937.1 JAKCWS010000335.1 95.94 True translocation 1753029 1756677 1576171 1579820 NC_060945.1 JAKCWS010000335.1 96.15 True local misassembly 1758936 1760787 1579821 1581668 NC_060945.1 JAKCWS010000335.1 96.95 True relocation, inconsistency = 99142 1860409 1863728 1582148 1585464 NC_060945.1 JAKCWS010000335.1 97.14 True translocation 939529 944053 1585489 1590008 NC_060937.1 JAKCWS010000335.1 95.91 True translocation 92630257 92635825 1590009 1595583 NC_060927.1 JAKCWS010000335.1 96.51 True translocation 2652981 2653672 1595584 1596279 NC_060946.1 JAKCWS010000335.1 96.36 True translocation 1130657 1132912 1596394 1598661 NC_060937.1 JAKCWS010000335.1 96.07 True relocation, inconsistency = 372147 1505060 1507769 1598662 1601328 NC_060937.1 JAKCWS010000335.1 95.69 True translocation 1739248 1743908 1601329 1605978 NC_060945.1 JAKCWS010000335.1 96.29 True relocation, inconsistency = 118218 1862127 1862756 1605979 1606608 NC_060945.1 JAKCWS010000335.1 97.19 True indel: indel (<= 5bp) 1862757 1863907 1606611 1607761 NC_060945.1 JAKCWS010000335.1 96.52 True local misassembly 1863908 1864879 1608138 1609109 NC_060945.1 JAKCWS010000335.1 98.46 True translocation 3044736 3047849 1609261 1612369 NC_060946.1 JAKCWS010000335.1 95.54 True translocation 4562741 4564261 1612499 1614019 NC_060937.1 JAKCWS010000335.1 97.37 True relocation, inconsistency = -4337708 227052 227731 1614518 1615197 NC_060937.1 JAKCWS010000335.1 97.94 True indel: indel (<= 5bp) 227732 228522 1615203 1615993 NC_060937.1 JAKCWS010000335.1 96.27 True relocation, inconsistency = 525746 754269 757043 1615994 1618772 NC_060937.1 JAKCWS010000335.1 96.73 True relocation, inconsistency = 222323 979607 980326 1619013 1619732 NC_060937.1 JAKCWS010000335.1 97.5 True translocation 92853860 92857864 1620119 1624136 NC_060927.1 JAKCWS010000335.1 96.27 True translocation 1863028 1867864 1624510 1629352 NC_060945.1 JAKCWS010000335.1 96.53 True translocation 434233 434998 1629353 1630118 NC_060937.1 JAKCWS010000335.1 97.64 True translocation 1757710 1762550 1631817 1636657 NC_060945.1 JAKCWS010000335.1 97.2 True relocation, inconsistency = -494230 1270531 1271277 1638868 1639614 NC_060945.1 JAKCWS010000335.1 97.32 True local misassembly 1272105 1275642 1640809 1644346 NC_060945.1 JAKCWS010000335.1 97.06 True translocation 94860087 94864066 1644618 1648606 NC_060927.1 JAKCWS010000335.1 97.24 True translocation 1426125 1427211 1648607 1649693 NC_060939.1 JAKCWS010000335.1 98.51 True translocation 94942522 94944639 1652888 1655011 NC_060927.1 JAKCWS010000335.1 96.56 True relocation, inconsistency = -2104492 92840701 92845957 1655565 1660801 NC_060927.1 JAKCWS010000335.1 96.37 True relocation, inconsistency = 1151137 93997095 93998835 1660802 1662541 NC_060927.1 JAKCWS010000335.1 96.89 True translocation 1418631 1419298 1662542 1663209 NC_060945.1 JAKCWS010000335.1 97.41 True translocation 92657217 92659118 1663307 1665207 NC_060927.1 JAKCWS010000335.1 97.74 True local misassembly 92657217 92659092 1665931 1667805 NC_060927.1 JAKCWS010000335.1 97.76 True local misassembly 92657217 92659118 1668555 1670455 NC_060927.1 JAKCWS010000335.1 97.74 True translocation 1418673 1419298 1670456 1671081 NC_060945.1 JAKCWS010000335.1 97.62 True translocation 92608915 92610938 1671179 1673200 NC_060927.1 JAKCWS010000335.1 97.01 True translocation 1807267 1810146 1673201 1676074 NC_060945.1 JAKCWS010000335.1 96.32 True translocation 92629285 92633138 1677164 1681025 NC_060927.1 JAKCWS010000335.1 95.99 True relocation, inconsistency = 24059 92657217 92659118 1681045 1682945 NC_060927.1 JAKCWS010000335.1 97.74 True translocation 925767 927596 1683122 1684940 NC_060937.1 JAKCWS010000335.1 96.12 True translocation 1807267 1810146 1684941 1687814 NC_060945.1 JAKCWS010000335.1 96.29 True translocation 93623659 93624549 1687815 1688699 NC_060927.1 JAKCWS010000335.1 96.12 True translocation 1368327 1369066 1688884 1689622 NC_060939.1 JAKCWS010000335.1 97.46 True translocation 92822275 92827173 1689623 1694527 NC_060927.1 JAKCWS010000335.1 96.8 True relocation, inconsistency = 1823406 94650580 94651900 1694528 1695847 NC_060927.1 JAKCWS010000335.1 97.77 True translocation 2312103 2314788 1695848 1698537 NC_060937.1 JAKCWS010000335.1 96.69 True relocation, inconsistency = -1320914 993875 995070 1698538 1699733 NC_060937.1 JAKCWS010000335.1 96.25 True indel: indel (<= 5bp) 995076 995601 1699734 1700259 NC_060937.1 JAKCWS010000335.1 97.72 True translocation 92853170 92856243 1700450 1703531 NC_060927.1 JAKCWS010000335.1 95.72 True translocation 3628836 3629601 1704760 1705520 NC_060937.1 JAKCWS010000335.1 96.6 True relocation, inconsistency = -2638587 991015 994716 1705521 1709231 NC_060937.1 JAKCWS010000335.1 96.61 True translocation 1279542 1281090 1709232 1710770 NC_060939.1 JAKCWS010000335.1 96.74 True relocation, inconsistency = 85962 1367053 1370671 1710771 1714379 NC_060939.1 JAKCWS010000335.1 96.57 True translocation 3124702 3129932 1718923 1724161 NC_060946.1 JAKCWS010000335.1 96.53 True translocation 994182 994716 1724162 1724696 NC_060937.1 JAKCWS010000335.1 96.63 True translocation 1368327 1370046 1725766 1727485 NC_060939.1 JAKCWS010000335.1 97.42 True local misassembly 1367053 1371825 1727486 1732248 NC_060939.1 JAKCWS010000335.1 96.06 True translocation 95047108 95050769 1732249 1735895 NC_060927.1 JAKCWS010000335.1 95.91 True translocation 1369358 1371710 1738390 1740737 NC_060939.1 JAKCWS010000335.1 95.83 True fake: not a misassembly (possible transposable element) 3438723 3443288 1740738 1745304 NC_060946.1 JAKCWS010000335.1 96.77 True fake: not a misassembly (possible transposable element) 1372538 1375089 1745305 1747864 NC_060939.1 JAKCWS010000335.1 96.79 True translocation 3629781 3634090 1747865 1752183 NC_060937.1 JAKCWS010000335.1 96.41 True translocation 1597814 1601872 1752289 1756330 NC_060945.1 JAKCWS010000335.1 96.48 True relocation, inconsistency = 152425 1757147 1758376 1759180 1760404 NC_060945.1 JAKCWS010000335.1 96.82 True translocation 3179296 3184981 1760405 1766088 NC_060946.1 JAKCWS010000335.1 95.64 True translocation 2000189 2001193 1766089 1767093 NC_060937.1 JAKCWS010000335.1 95.53 True relocation, inconsistency = 2094107 4095438 4097584 1767231 1769376 NC_060937.1 JAKCWS010000335.1 97.72 True translocation 3331900 3335339 1769377 1772813 NC_060946.1 JAKCWS010000335.1 95.83 True translocation 2725053 2727798 1773323 1776067 NC_060937.1 JAKCWS010000335.1 98.0 True relocation, inconsistency = -2580058 149152 151183 1777479 1779514 NC_060937.1 JAKCWS010000335.1 95.59 True relocation, inconsistency = 3165204 3316507 3320123 1779634 1783249 NC_060937.1 JAKCWS010000335.1 96.0 True relocation, inconsistency = 309745 3630296 3632406 1783677 1785787 NC_060937.1 JAKCWS010000335.1 96.83 True translocation 1321834 1323193 1785788 1787137 NC_060945.1 JAKCWS010000335.1 97.69 True relocation, inconsistency = 482146 1805340 1810122 1787138 1791928 NC_060945.1 JAKCWS010000335.1 96.41 True translocation 1279646 1282063 1793009 1795427 NC_060939.1 JAKCWS010000335.1 97.23 True translocation 342185 344054 1795879 1797748 NC_060937.1 JAKCWS010000335.1 97.11 True indel: indel (<= 5bp) 344055 345698 1797754 1799397 NC_060937.1 JAKCWS010000335.1 96.78 True local misassembly 345867 346554 1799398 1800085 NC_060937.1 JAKCWS010000335.1 95.64 True translocation 1752298 1753028 1800501 1801226 NC_060945.1 JAKCWS010000335.1 96.94 True translocation 92679657 92685135 1801227 1806717 NC_060927.1 JAKCWS010000335.1 96.5 True translocation 1796147 1797394 1806718 1808007 NC_060945.1 JAKCWS010000335.1 95.0 True translocation 4949366 4954842 1808008 1813404 NC_060937.1 JAKCWS010000335.1 95.15 True local misassembly 4959653 4965243 1813827 1819425 NC_060937.1 JAKCWS010000335.1 96.45 True translocation 94813325 94816677 1819426 1822783 NC_060927.1 JAKCWS010000335.1 97.03 True relocation, inconsistency = -47363 94769469 94777002 1822938 1830443 NC_060927.1 JAKCWS010000335.1 95.74 True relocation, inconsistency = -2025923 92751638 92752259 1831002 1831623 NC_060927.1 JAKCWS010000335.1 96.62 True indel: indel (> 5bp) 92752703 92753379 1832076 1832752 NC_060927.1 JAKCWS010000335.1 96.48 True translocation 495316 496709 1832753 1834141 NC_060937.1 JAKCWS010000335.1 96.13 True relocation, inconsistency = -18982 477728 478257 1834142 1834671 NC_060937.1 JAKCWS010000335.1 95.98 True indel: indel (> 5bp) 478342 479341 1834672 1835671 NC_060937.1 JAKCWS010000335.1 95.9 True indel: indel (<= 5bp) 479720 480343 1836049 1836672 NC_060937.1 JAKCWS010000335.1 95.67 True relocation, inconsistency = 273296 753720 756261 1836753 1839288 NC_060937.1 JAKCWS010000335.1 96.08 True translocation 95157105 95158105 1839289 1840289 NC_060927.1 JAKCWS010000335.1 96.01 True translocation 1367110 1370816 1840290 1843996 NC_060939.1 JAKCWS010000335.1 97.83 True local misassembly 1365948 1371908 1843997 1849951 NC_060939.1 JAKCWS010000335.1 96.1 True local misassembly 1369661 1371409 1849952 1851700 NC_060939.1 JAKCWS010000335.1 97.72 True translocation 1605551 1606798 1851768 1853015 NC_060945.1 JAKCWS010000335.1 97.33 True translocation 2937296 2943602 1853016 1859318 NC_060946.1 JAKCWS010000335.1 96.76 True translocation 979859 980671 1859319 1860137 NC_060937.1 JAKCWS010000335.1 97.28 True translocation 2937296 2943602 1860138 1866445 NC_060946.1 JAKCWS010000335.1 96.8 True relocation, inconsistency = 517161 3460764 3463386 1866446 1869077 NC_060946.1 JAKCWS010000335.1 96.89 True translocation 92764944 92766567 1869078 1870701 NC_060927.1 JAKCWS010000335.1 98.48 True translocation 733375 734213 1871520 1872363 NC_060937.1 JAKCWS010000335.1 96.52 True translocation 1617632 1620122 1872364 1874846 NC_060945.1 JAKCWS010000335.1 95.91 True translocation 92859916 92865641 1874847 1880571 NC_060927.1 JAKCWS010000335.1 96.43 True translocation 4533480 4534670 1880572 1881762 NC_060937.1 JAKCWS010000335.1 98.56 True indel: indel (> 5bp) 4534755 4535432 1881763 1882440 NC_060937.1 JAKCWS010000335.1 96.46 True translocation 92933757 92936017 1882443 1884698 NC_060927.1 JAKCWS010000335.1 96.99 True translocation 1250853 1254780 1884699 1888630 NC_060939.1 JAKCWS010000335.1 95.66 True translocation 1930215 1934036 1888931 1892661 NC_060945.1 JAKCWS010000335.1 95.53 True local misassembly 1933744 1935917 1892663 1894836 NC_060945.1 JAKCWS010000335.1 97.48 True translocation 1250853 1254780 1894919 1898850 NC_060939.1 JAKCWS010000335.1 95.63 True translocation 92764244 92766730 1900530 1903012 NC_060927.1 JAKCWS010000335.1 97.31 True translocation 4924892 4925413 1903176 1903697 NC_060937.1 JAKCWS010000335.1 98.28 True indel: indel (<= 5bp) 4925415 4926432 1903698 1904715 NC_060937.1 JAKCWS010000335.1 97.94 True translocation 92799658 92800616 1904814 1905770 NC_060927.1 JAKCWS010000335.1 96.77 True relocation, inconsistency = 987347 93788518 93791285 1906325 1909087 NC_060927.1 JAKCWS010000335.1 96.39 True translocation 4698347 4699383 1909088 1910124 NC_060937.1 JAKCWS010000335.1 95.89 True translocation 94826503 94828049 1910222 1911773 NC_060927.1 JAKCWS010000335.1 96.45 True translocation 1808393 1811028 1911774 1914412 NC_060945.1 JAKCWS010000335.1 96.63 True translocation 1993687 1994715 1915543 1916576 NC_060937.1 JAKCWS010000335.1 95.74 True relocation, inconsistency = -917013 1077888 1081221 1916762 1920093 NC_060937.1 JAKCWS010000335.1 96.8 True translocation 3036539 3041008 1920764 1925233 NC_060946.1 JAKCWS010000335.1 95.92 True translocation 1078184 1081281 1925316 1928413 NC_060937.1 JAKCWS010000335.1 96.91 True relocation, inconsistency = 3616198 4697480 4699383 1928414 1930312 NC_060937.1 JAKCWS010000335.1 95.89 True translocation 94826503 94828049 1930410 1931961 NC_060927.1 JAKCWS010000335.1 96.45 True translocation 1808393 1811028 1931962 1934600 NC_060945.1 JAKCWS010000335.1 96.63 True translocation 1279856 1280526 1935531 1936201 NC_060939.1 JAKCWS010000335.1 97.48 True translocation 2311738 2316297 1936202 1940764 NC_060937.1 JAKCWS010000335.1 96.61 True translocation 3036539 3041008 1940952 1945421 NC_060946.1 JAKCWS010000335.1 95.92 True translocation 95172271 95173472 1947120 1948318 NC_060927.1 JAKCWS010000335.1 96.51 True relocation, inconsistency = 182905 95356378 95357097 1948319 1949039 NC_060927.1 JAKCWS010000335.1 96.57 True relocation, inconsistency = -418814 94938902 94940427 1949658 1951180 NC_060927.1 JAKCWS010000335.1 96.07 True translocation 804617 805210 1956914 1957507 NC_060937.1 JAKCWS010000335.1 96.8 True indel: indel (<= 5bp) 805671 806412 1957971 1958712 NC_060937.1 JAKCWS010000335.1 96.9 True indel: indel (<= 5bp) 806413 807012 1958714 1959313 NC_060937.1 JAKCWS010000335.1 96.67 True local misassembly 807503 808593 1960142 1961232 NC_060937.1 JAKCWS010000335.1 97.25 True indel: indel (<= 5bp) 808594 809306 1961234 1961946 NC_060937.1 JAKCWS010000335.1 96.77 True translocation 94953595 94954233 1962653 1963292 NC_060927.1 JAKCWS010000335.1 97.34 True relocation, inconsistency = 378997 95335966 95337026 1966028 1967088 NC_060927.1 JAKCWS010000335.1 96.04 True indel: indel (<= 5bp) 95337143 95337712 1967208 1967777 NC_060927.1 JAKCWS010000335.1 95.79 True indel: indel (<= 5bp) 95337965 95338594 1968028 1968657 NC_060927.1 JAKCWS010000335.1 96.98 True local misassembly 95337965 95338619 1969120 1969774 NC_060927.1 JAKCWS010000335.1 95.57 True translocation 1253655 1255214 1971903 1973471 NC_060938.1 JAKCWS010000335.1 95.86 True translocation 4971649 4972260 1983712 1984323 NC_060937.1 JAKCWS010000335.1 97.55 True translocation 1530286 1531017 1984826 1985557 NC_060939.1 JAKCWS010000335.1 97.81 True local misassembly 1529703 1538915 1986081 1995298 NC_060939.1 JAKCWS010000335.1 98.15 True translocation 1319284 1424533 1995299 2101026 NC_060938.1 JAKCWS010000335.1 97.83 True translocation 95475627 95477333 2101880 2103586 NC_060927.1 JAKCWS010000335.1 99.88 True translocation 2053672 2085916 2105833 2138075 NC_060945.1 JAKCWS010000335.1 96.43 True translocation 7821661 7822216 2139470 2138915 NC_060946.1 JAKCWS010000335.1 98.02 True local misassembly 7818917 7819579 2142153 2141491 NC_060946.1 JAKCWS010000335.1 97.89 True local misassembly 7816786 7817610 2143872 2143048 NC_060946.1 JAKCWS010000335.1 97.7 True indel: indel (> 5bp) 7816172 7816718 2144467 2143921 NC_060946.1 JAKCWS010000335.1 97.81 True local misassembly 7814409 7815391 2146230 2145248 NC_060946.1 JAKCWS010000335.1 97.86 True local misassembly 7812262 7813544 2148347 2147065 NC_060946.1 JAKCWS010000335.1 98.05 True translocation 10697130 10698823 2151727 2150019 NC_060937.1 JAKCWS010000335.1 95.08 True local misassembly 10696135 10696833 2152461 2151763 NC_060937.1 JAKCWS010000335.1 98.71 True indel: indel (<= 5bp) 10695513 10696134 2153088 2152467 NC_060937.1 JAKCWS010000335.1 98.71 True indel: indel (> 5bp) 10694706 10695415 2153920 2153211 NC_060937.1 JAKCWS010000335.1 98.17 True indel: indel (> 5bp) 10693322 10694415 2155319 2154226 NC_060937.1 JAKCWS010000335.1 98.45 True indel: indel (> 5bp) 10692781 10693321 2155870 2155330 NC_060937.1 JAKCWS010000335.1 98.89 True local misassembly 10691128 10692284 2157538 2156382 NC_060937.1 JAKCWS010000335.1 97.67 True local misassembly 10689705 10690418 2159050 2158337 NC_060937.1 JAKCWS010000335.1 98.18 True local misassembly 10687942 10689058 2160873 2159757 NC_060937.1 JAKCWS010000335.1 98.21 True local misassembly 10686269 10686928 2162137 2161478 NC_060937.1 JAKCWS010000335.1 98.48 True local misassembly 10682250 10682885 2166432 2165797 NC_060937.1 JAKCWS010000335.1 98.43 True local misassembly 10680597 10681618 2168168 2167147 NC_060937.1 JAKCWS010000335.1 98.63 True translocation 95504835 95711725 2168587 2377286 NC_060927.1 JAKCWS010000335.1 97.91 True translocation 30174481 30176681 2377287 2379489 NC_060944.1 JAKCWS010000335.1 95.8 True indel: indel (> 5bp) 30176753 30179356 2379553 2382151 NC_060944.1 JAKCWS010000335.1 95.32 True local misassembly 30181235 30181861 2383981 2384607 NC_060944.1 JAKCWS010000335.1 96.81 True indel: indel (<= 5bp) 30181866 30182575 2384608 2385317 NC_060944.1 JAKCWS010000335.1 97.61 True local misassembly 30184929 30186964 2387749 2389802 NC_060944.1 JAKCWS010000335.1 95.47 True translocation 4834185 4834701 2392413 2391897 NC_060939.1 JAKCWS010000335.1 96.32 True local misassembly 4831323 4832198 2395245 2394370 NC_060939.1 JAKCWS010000335.1 96.23 True local misassembly 4829955 4830746 2396618 2395827 NC_060939.1 JAKCWS010000335.1 96.72 True local misassembly 4827270 4828699 2399067 2397638 NC_060939.1 JAKCWS010000335.1 96.85 True local misassembly 4825870 4826719 2400520 2399671 NC_060939.1 JAKCWS010000335.1 97.18 True local misassembly 4822182 4825462 2405887 2402607 NC_060939.1 JAKCWS010000335.1 97.23 True indel: stretch of mismatches 4818335 4821886 2409734 2406183 NC_060939.1 JAKCWS010000335.1 95.61 True indel: indel (<= 5bp) 4817472 4818104 2410600 2409968 NC_060939.1 JAKCWS010000335.1 96.84 True indel: indel (<= 5bp) 4812276 4817471 2415797 2410602 NC_060939.1 JAKCWS010000335.1 98.71 True indel: indel (<= 5bp) 4811457 4812274 2416615 2415798 NC_060939.1 JAKCWS010000335.1 99.39 True indel: indel (> 5bp) 4809362 4811305 2418723 2416780 NC_060939.1 JAKCWS010000335.1 98.56 True translocation 5791352 5792028 2420499 2419823 NC_060946.1 JAKCWS010000335.1 97.19 True indel: indel (<= 5bp) 5790293 5791351 2421559 2420501 NC_060946.1 JAKCWS010000335.1 98.68 True local misassembly 5788559 5789507 2422552 2421604 NC_060946.1 JAKCWS010000335.1 98.74 True indel: indel (<= 5bp) 5786885 5788555 2424223 2422553 NC_060946.1 JAKCWS010000335.1 98.92 True local misassembly 5785064 5786343 2426020 2424741 NC_060946.1 JAKCWS010000335.1 99.22 True indel: indel (<= 5bp) 5784026 5785062 2427057 2426021 NC_060946.1 JAKCWS010000335.1 99.61 True indel: indel (> 5bp) 5783507 5784006 2427557 2427058 NC_060946.1 JAKCWS010000335.1 98.8 True indel: indel (<= 5bp) 5781787 5783284 2429275 2427778 NC_060946.1 JAKCWS010000335.1 98.93 True indel: indel (<= 5bp) 5780240 5781365 2430820 2429695 NC_060946.1 JAKCWS010000335.1 97.07 True translocation 4795414 4795990 2431832 2431256 NC_060939.1 JAKCWS010000335.1 97.92 True indel: indel (<= 5bp) 4794026 4795046 2433217 2432197 NC_060939.1 JAKCWS010000335.1 97.26 True translocation 3939149 3940047 2434528 2435426 NC_060946.1 JAKCWS010000335.1 96.44 True local misassembly 3945733 3946652 2441488 2442407 NC_060946.1 JAKCWS010000335.1 97.07 True relocation, inconsistency = -46669 3906045 3906964 2448469 2449388 NC_060946.1 JAKCWS010000335.1 96.96 True indel: indel (<= 5bp) 3907325 3917527 2449753 2460931 NC_060946.1 JAKCWS010000335.1 95.81 True translocation 1882175 2078022 2460932 2656033 NC_060939.1 JAKCWS010000335.1 97.07 True translocation 5371740 5387202 2656034 2671830 NC_060937.1 JAKCWS010000335.1 98.98 True translocation 4408446 4597727 2671831 2860877 NC_060946.1 JAKCWS010000335.1 97.95 True translocation 5574763 5608823 2861038 2895158 NC_060937.1 JAKCWS010000335.1 98.45 True local misassembly 5609436 5615479 2895441 2901488 NC_060937.1 JAKCWS010000335.1 98.59 True translocation 4638723 4711406 2901489 2974175 NC_060946.1 JAKCWS010000335.1 99.57 True translocation, scaffold gap is present 98294 99566 2974189 2975461 NC_060945.1 JAKCWS010000335.1 98.35 True indel: indel (> 5bp) 99782 189691 2975629 3064800 NC_060945.1 JAKCWS010000335.1 95.69 True relocation, inconsistency = -21284 168642 280388 3065035 3175367 NC_060945.1 JAKCWS010000335.1 95.35 True translocation 332191 334899 3175445 3178153 NC_060946.1 JAKCWS010000335.1 96.38 True indel: indel (> 5bp) 334900 337499 3178218 3180817 NC_060946.1 JAKCWS010000335.1 96.65 True indel: indel (<= 5bp) 337501 338335 3180818 3181652 NC_060946.1 JAKCWS010000335.1 97.01 True translocation 220167 368824 3182173 3331266 NC_060939.1 JAKCWS010000335.1 98.73 True translocation 492478 496148 3332111 3335781 NC_060946.1 JAKCWS010000335.1 97.71 True indel: indel (<= 5bp) 496150 497919 3335782 3337551 NC_060946.1 JAKCWS010000335.1 98.53 True translocation 628223 642337 3337573 3351756 NC_060939.1 JAKCWS010000335.1 96.87 True translocation 788407 789429 3352830 3353852 NC_060945.1 JAKCWS010000335.1 96.09 True indel: stretch of mismatches 789701 790379 3354124 3354802 NC_060945.1 JAKCWS010000335.1 97.05 True indel: indel (<= 5bp) 790381 791262 3354803 3355684 NC_060945.1 JAKCWS010000335.1 95.8 True indel: indel (<= 5bp) 791263 793785 3355686 3358208 NC_060945.1 JAKCWS010000335.1 96.75 True indel: indel (<= 5bp) 793786 794321 3358211 3358746 NC_060945.1 JAKCWS010000335.1 95.52 True indel: indel (<= 5bp) 794323 795195 3358747 3359619 NC_060945.1 JAKCWS010000335.1 95.99 True indel: stretch of mismatches 795616 796293 3360040 3360717 NC_060945.1 JAKCWS010000335.1 96.46 True indel: indel (<= 5bp) 796295 797317 3360718 3361740 NC_060945.1 JAKCWS010000335.1 95.99 True indel: stretch of mismatches 797585 798266 3362008 3362689 NC_060945.1 JAKCWS010000335.1 95.16 True translocation 2073608 2111151 3362736 3400201 NC_060946.1 JAKCWS010000335.1 96.22 True translocation 816261 817138 3400202 3401079 NC_060945.1 JAKCWS010000335.1 96.87 True indel: indel (> 5bp) 817382 818471 3401391 3402480 NC_060945.1 JAKCWS010000335.1 96.51 True translocation 516783 518664 3404233 3406113 NC_060946.1 JAKCWS010000335.1 97.13 True local misassembly 519714 522609 3407164 3410058 NC_060946.1 JAKCWS010000335.1 96.89 True indel: indel (<= 5bp) 522726 532066 3410176 3419513 NC_060946.1 JAKCWS010000335.1 96.16 True relocation, inconsistency = 1560911 2093223 2093722 3419759 3420258 NC_060946.1 JAKCWS010000335.1 97.6 True indel: indel (<= 5bp) 2093724 2094312 3420259 3420847 NC_060946.1 JAKCWS010000335.1 96.43 True indel: indel (<= 5bp) 2094716 2096285 3421250 3422819 NC_060946.1 JAKCWS010000335.1 97.58 True indel: stretch of mismatches 2096557 2097347 3423091 3423881 NC_060946.1 JAKCWS010000335.1 96.71 True indel: stretch of mismatches 2097669 2098257 3424203 3424791 NC_060946.1 JAKCWS010000335.1 96.1 True local misassembly 2099007 2099729 3425539 3426261 NC_060946.1 JAKCWS010000335.1 96.68 True local misassembly 2100496 2101611 3427030 3428145 NC_060946.1 JAKCWS010000335.1 96.51 True indel: indel (<= 5bp) 2101613 2102201 3428146 3428734 NC_060946.1 JAKCWS010000335.1 95.93 True local misassembly 2102924 2104174 3429797 3431047 NC_060946.1 JAKCWS010000335.1 95.84 True indel: stretch of mismatches 2104441 2106147 3431314 3433020 NC_060946.1 JAKCWS010000335.1 96.13 True indel: indel (<= 5bp) 2106149 2108121 3433021 3434993 NC_060946.1 JAKCWS010000335.1 95.69 True indel: indel (<= 5bp) 2108123 2108698 3434994 3435569 NC_060946.1 JAKCWS010000335.1 96.35 True relocation, inconsistency = -1398102 710615 714085 3435588 3439058 NC_060946.1 JAKCWS010000335.1 97.18 True relocation, inconsistency = 182306 896779 899540 3439446 3442207 NC_060946.1 JAKCWS010000335.1 96.02 True indel: indel (<= 5bp) 899542 901107 3442208 3443773 NC_060946.1 JAKCWS010000335.1 96.17 True indel: indel (<= 5bp) 901148 902635 3443815 3445302 NC_060946.1 JAKCWS010000335.1 96.37 True indel: indel (> 5bp) 902704 903750 3445303 3446349 NC_060946.1 JAKCWS010000335.1 96.47 True indel: indel (<= 5bp) 903751 905656 3446351 3448256 NC_060946.1 JAKCWS010000335.1 97.11 True indel: indel (<= 5bp) 905657 907120 3448258 3449721 NC_060946.1 JAKCWS010000335.1 96.89 True translocation 787278 807088 3449722 3469266 NC_060945.1 JAKCWS010000335.1 95.12 True translocation 2073425 2089010 3470441 3486024 NC_060946.1 JAKCWS010000335.1 96.71 True relocation, inconsistency = -1583368 506181 510015 3486563 3490396 NC_060946.1 JAKCWS010000335.1 97.0 True translocation 713576 714643 3491398 3492465 NC_060939.1 JAKCWS010000335.1 96.35 True indel: indel (<= 5bp) 714645 715146 3492466 3492967 NC_060939.1 JAKCWS010000335.1 97.01 True indel: indel (<= 5bp) 715396 717042 3493215 3494861 NC_060939.1 JAKCWS010000335.1 96.6 True translocation 787855 789429 3500715 3502289 NC_060945.1 JAKCWS010000335.1 96.13 True indel: stretch of mismatches 789701 791262 3502561 3504122 NC_060945.1 JAKCWS010000335.1 96.67 True indel: indel (<= 5bp) 791263 793785 3504124 3506646 NC_060945.1 JAKCWS010000335.1 96.31 True indel: indel (<= 5bp) 793786 795345 3506649 3508208 NC_060945.1 JAKCWS010000335.1 96.35 True indel: indel (<= 5bp) 795616 796466 3508480 3509330 NC_060945.1 JAKCWS010000335.1 97.41 True indel: indel (> 5bp) 796535 797350 3509331 3510146 NC_060945.1 JAKCWS010000335.1 96.94 True local misassembly 798201 798920 3510724 3511443 NC_060945.1 JAKCWS010000335.1 96.94 True local misassembly 799900 801944 3512152 3514196 NC_060945.1 JAKCWS010000335.1 96.19 True indel: indel (<= 5bp) 801945 802555 3514199 3514809 NC_060945.1 JAKCWS010000335.1 95.91 True relocation, inconsistency = -8640 798649 799188 3519543 3520082 NC_060945.1 JAKCWS010000335.1 96.85 True translocation 699069 706621 3520875 3528357 NC_060946.1 JAKCWS010000335.1 95.95 True relocation, inconsistency = -64658 643306 644103 3529700 3530497 NC_060946.1 JAKCWS010000335.1 96.74 True indel: indel (> 5bp) 644104 644879 3530566 3531341 NC_060946.1 JAKCWS010000335.1 96.52 True local misassembly 645904 646718 3532502 3533316 NC_060946.1 JAKCWS010000335.1 96.32 True relocation, inconsistency = 1365930 2014700 2022605 3535368 3543339 NC_060946.1 JAKCWS010000335.1 96.28 True local misassembly 2023737 2028983 3544673 3549917 NC_060946.1 JAKCWS010000335.1 96.95 True relocation, inconsistency = 196131 2225437 2227201 3550240 3552004 NC_060946.1 JAKCWS010000335.1 96.88 True indel: indel (<= 5bp) 2227202 2227980 3552006 3552784 NC_060946.1 JAKCWS010000335.1 97.3 True local misassembly 2229107 2231045 3553435 3555373 NC_060946.1 JAKCWS010000335.1 96.44 True local misassembly 2232327 2234520 3556860 3559053 NC_060946.1 JAKCWS010000335.1 97.54 True local misassembly 2235538 2236786 3560276 3561525 NC_060946.1 JAKCWS010000335.1 95.76 True local misassembly 2238104 2246880 3562972 3571750 NC_060946.1 JAKCWS010000335.1 99.04 True relocation, inconsistency = -354060 1892821 2009469 3571751 3688645 NC_060946.1 JAKCWS010000335.1 98.35 True relocation, inconsistency = 15655 2025125 2051427 3688646 3715212 NC_060946.1 JAKCWS010000335.1 95.49 True translocation 717761 725195 3715213 3722579 NC_060945.1 JAKCWS010000335.1 96.58 True translocation 2029797 2108100 3722580 3800814 NC_060946.1 JAKCWS010000335.1 98.76 True translocation 861186 871881 3802012 3812704 NC_060945.1 JAKCWS010000335.1 98.25 True translocation 2168901 2205549 3812705 3848873 NC_060946.1 JAKCWS010000335.1 96.8 True indel: stretch of mismatches 2205741 2206321 3849065 3849645 NC_060946.1 JAKCWS010000335.1 96.73 True local misassembly 2199754 2220039 3849682 3869967 NC_060946.1 JAKCWS010000335.1 96.73 True indel: stretch of mismatches 2220486 2446915 3870414 4098376 NC_060946.1 JAKCWS010000335.1 99.09 True local misassembly 2444902 2468144 4098377 4121509 NC_060946.1 JAKCWS010000335.1 98.31 True local misassembly 2476587 2478219 4123132 4124764 NC_060946.1 JAKCWS010000335.1 99.45 True local misassembly 2474861 2512810 4126028 4164373 NC_060946.1 JAKCWS010000335.1 98.16 True local misassembly 2512722 2526231 4165364 4178888 NC_060946.1 JAKCWS010000335.1 99.48 True local misassembly 2527735 2574951 4186052 4233194 NC_060946.1 JAKCWS010000335.1 99.06 True translocation 42531 51076 4233195 4241740 NC_060937.1 JAKCWS010000335.1 96.44 True translocation 2600945 2641474 4241741 4281782 NC_060946.1 JAKCWS010000335.1 98.25 True relocation, inconsistency = -11826 2629649 2640723 4281783 4292857 NC_060946.1 JAKCWS010000335.1 99.59 True relocation, inconsistency = -11831 2628893 2652180 4292858 4316125 NC_060946.1 JAKCWS010000335.1 99.34 True translocation 531752 533470 4316126 4317849 NC_060937.1 JAKCWS010000335.1 98.77 True translocation 94815785 94819247 4317887 4321357 NC_060927.1 JAKCWS010000335.1 96.21 True translocation 529855 534971 4321358 4326480 NC_060937.1 JAKCWS010000335.1 98.97 True relocation, inconsistency = -310774 225456 230129 4327739 4332410 NC_060937.1 JAKCWS010000335.1 99.08 True relocation, inconsistency = 9596 239958 243456 4332643 4336140 NC_060937.1 JAKCWS010000335.1 99.74 True translocation 2677700 2689647 4336141 4347925 NC_060946.1 JAKCWS010000335.1 97.68 True relocation, inconsistency = -14527 2675121 2683425 4347926 4356230 NC_060946.1 JAKCWS010000335.1 99.91 True local misassembly 2683804 2688939 4356231 4361366 NC_060946.1 JAKCWS010000335.1 99.94 True indel: indel (<= 5bp) 2688940 2694167 4361371 4366598 NC_060946.1 JAKCWS010000335.1 99.87 True local misassembly 2688575 2701591 4366599 4379619 NC_060946.1 JAKCWS010000335.1 99.73 True translocation 250069 253832 4379851 4383614 NC_060937.1 JAKCWS010000335.1 98.83 True local misassembly 254211 256775 4383615 4386179 NC_060937.1 JAKCWS010000335.1 99.73 True indel: indel (<= 5bp) 256777 258491 4386180 4387894 NC_060937.1 JAKCWS010000335.1 100.0 True local misassembly 258870 262702 4387895 4391727 NC_060937.1 JAKCWS010000335.1 99.61 True relocation, inconsistency = -13249 249679 254462 4391953 4396775 NC_060937.1 JAKCWS010000335.1 97.89 True relocation, inconsistency = 27939 282481 288724 4396855 4403135 NC_060937.1 JAKCWS010000335.1 98.37 True translocation 2719751 2727788 4403136 4411178 NC_060946.1 JAKCWS010000335.1 99.63 True local misassembly 2731421 2732891 4414772 4416242 NC_060946.1 JAKCWS010000335.1 98.84 True indel: indel (<= 5bp) 2732892 2733487 4416248 4416843 NC_060946.1 JAKCWS010000335.1 95.3 True local misassembly 2733488 2739403 4417012 4422927 NC_060946.1 JAKCWS010000335.1 99.46 True local misassembly 2739824 2741545 4422928 4424649 NC_060946.1 JAKCWS010000335.1 98.03 True local misassembly 2742084 2743352 4425230 4426498 NC_060946.1 JAKCWS010000335.1 99.28 True relocation, inconsistency = -9865 2733488 2739823 4426499 4432834 NC_060946.1 JAKCWS010000335.1 99.35 True local misassembly 2736800 2739029 4432835 4435064 NC_060946.1 JAKCWS010000335.1 99.79 True local misassembly 2739408 2741635 4435065 4437292 NC_060946.1 JAKCWS010000335.1 99.58 True relocation, inconsistency = -8143 2733493 2736332 4437293 4440132 NC_060946.1 JAKCWS010000335.1 99.71 True local misassembly 2734233 2748950 4440133 4454472 NC_060946.1 JAKCWS010000335.1 95.03 True local misassembly 2749152 2756311 4455041 4462200 NC_060946.1 JAKCWS010000335.1 99.46 True relocation, inconsistency = 14188 2770500 2788962 4462201 4480574 NC_060946.1 JAKCWS010000335.1 95.58 True relocation, inconsistency = 135635 2924598 2931110 4480575 4487087 NC_060946.1 JAKCWS010000335.1 99.8 True relocation, inconsistency = -79227 2851884 2854283 4487088 4489487 NC_060946.1 JAKCWS010000335.1 99.49 True local misassembly 2854284 2866246 4489866 4501828 NC_060946.1 JAKCWS010000335.1 99.9 True local misassembly 2863562 2887170 4502153 4525761 NC_060946.1 JAKCWS010000335.1 99.52 True relocation, inconsistency = -97504 2789667 2797513 4525762 4533607 NC_060946.1 JAKCWS010000335.1 99.71 True relocation, inconsistency = 129064 2926578 2958670 4533608 4566292 NC_060946.1 JAKCWS010000335.1 97.67 True fake: not a misassembly (possible transposable element) 94860532 94861744 4566293 4567505 NC_060927.1 JAKCWS010000335.1 97.47 True fake: not a misassembly (possible transposable element) 2956900 2971920 4567506 4583281 NC_060946.1 JAKCWS010000335.1 95.01 True fake: not a misassembly (possible transposable element) 169140 172020 4583282 4586164 NC_060937.1 JAKCWS010000335.1 96.12 True fake: not a misassembly (possible transposable element) 2980044 2989677 4586165 4595828 NC_060946.1 JAKCWS010000335.1 98.0 True local misassembly 2991931 2994174 4595829 4598072 NC_060946.1 JAKCWS010000335.1 99.91 True indel: indel (<= 5bp) 2994175 2995209 4598074 4599108 NC_060946.1 JAKCWS010000335.1 99.37 True local misassembly 2996711 3012427 4599109 4615066 NC_060946.1 JAKCWS010000335.1 95.99 True local misassembly 3016183 3017114 4615067 4615998 NC_060946.1 JAKCWS010000335.1 99.41 True translocation 962665 964569 4615999 4617903 NC_060937.1 JAKCWS010000335.1 99.16 True fake: not a misassembly (possible transposable element) 94813712 94816965 4617909 4621161 NC_060927.1 JAKCWS010000335.1 95.89 True fake: not a misassembly (possible transposable element) 974306 982851 4621190 4629734 NC_060937.1 JAKCWS010000335.1 99.7 True fake: not a misassembly (possible transposable element) 4656314 4657777 4630797 4632251 NC_060937.1 JAKCWS010000335.1 96.59 True fake: not a misassembly (possible transposable element) 979980 980671 4633758 4634455 NC_060937.1 JAKCWS010000335.1 97.24 True relocation, inconsistency = 3981292 4961964 4966263 4634456 4638753 NC_060937.1 JAKCWS010000335.1 97.19 True translocation 3017447 3019557 4638754 4640869 NC_060946.1 JAKCWS010000335.1 98.93 True translocation 1402507 1403392 4641104 4641989 NC_060945.1 JAKCWS010000335.1 97.51 True translocation 4961964 4966263 4641990 4646287 NC_060937.1 JAKCWS010000335.1 97.19 True translocation 3017447 3019027 4646288 4647868 NC_060946.1 JAKCWS010000335.1 98.82 True translocation 974728 982851 4647869 4655619 NC_060937.1 JAKCWS010000335.1 95.13 True relocation, inconsistency = 3672400 4656314 4657777 4656682 4658136 NC_060937.1 JAKCWS010000335.1 96.66 True fake: not a misassembly (possible transposable element) 172068 173020 4659474 4660430 NC_060937.1 JAKCWS010000335.1 96.17 True fake: not a misassembly (possible transposable element) 4656314 4657777 4660431 4661885 NC_060937.1 JAKCWS010000335.1 96.52 True relocation, inconsistency = -807154 3850906 3851707 4662168 4662969 NC_060937.1 JAKCWS010000335.1 95.64 True translocation 1605913 1606798 4663204 4664089 NC_060945.1 JAKCWS010000335.1 97.45 True translocation 4961964 4966263 4664090 4668387 NC_060937.1 JAKCWS010000335.1 97.19 True translocation 3017447 3020759 4668388 4671700 NC_060946.1 JAKCWS010000335.1 99.83 True local misassembly 3022802 3023448 4671701 4672347 NC_060946.1 JAKCWS010000335.1 99.82 True translocation 989790 996911 4672348 4679464 NC_060937.1 JAKCWS010000335.1 99.27 True relocation, inconsistency = 19338 1016250 1026470 4679465 4690062 NC_060937.1 JAKCWS010000335.1 95.16 True translocation 3062073 3072005 4690063 4699958 NC_060946.1 JAKCWS010000335.1 98.48 True local misassembly 3072761 3085405 4699959 4712239 NC_060946.1 JAKCWS010000335.1 96.24 True local misassembly 3089914 3122965 4712240 4744411 NC_060946.1 JAKCWS010000335.1 96.8 True local misassembly 3124465 3126049 4744412 4746211 NC_060946.1 JAKCWS010000335.1 96.18 True translocation 1106058 1112668 4746212 4752818 NC_060937.1 JAKCWS010000335.1 98.12 True local misassembly 1115311 1118599 4752819 4756107 NC_060937.1 JAKCWS010000335.1 99.61 True local misassembly 1118600 1121848 4756481 4759729 NC_060937.1 JAKCWS010000335.1 99.48 True local misassembly 1122201 1123302 4760212 4761313 NC_060937.1 JAKCWS010000335.1 98.37 True local misassembly 1117096 1117798 4761560 4762262 NC_060937.1 JAKCWS010000335.1 99.15 True local misassembly 1118450 1119531 4762914 4763995 NC_060937.1 JAKCWS010000335.1 98.61 True local misassembly 1119910 1122538 4763996 4766624 NC_060937.1 JAKCWS010000335.1 99.66 True local misassembly 1122912 1124555 4766625 4768268 NC_060937.1 JAKCWS010000335.1 99.64 True indel: indel (<= 5bp) 1124556 1126074 4768270 4769788 NC_060937.1 JAKCWS010000335.1 99.74 True indel: indel (<= 5bp) 1126076 1127182 4769789 4770895 NC_060937.1 JAKCWS010000335.1 97.92 True translocation 3077550 3079481 4771142 4773073 NC_060946.1 JAKCWS010000335.1 99.19 True translocation 1119910 1122538 4773074 4775702 NC_060937.1 JAKCWS010000335.1 99.66 True local misassembly 1122912 1124555 4775703 4777346 NC_060937.1 JAKCWS010000335.1 99.64 True indel: indel (<= 5bp) 1124556 1126737 4777348 4779529 NC_060937.1 JAKCWS010000335.1 99.63 True indel: indel (<= 5bp) 1126738 1127621 4779535 4780418 NC_060937.1 JAKCWS010000335.1 95.59 True local misassembly 1125747 1132838 4780419 4787556 NC_060937.1 JAKCWS010000335.1 98.75 True translocation 3159477 3160953 4787557 4789033 NC_060946.1 JAKCWS010000335.1 99.86 True local misassembly 3161332 3165293 4789034 4792995 NC_060946.1 JAKCWS010000335.1 99.65 True local misassembly 3162149 3169768 4793233 4800853 NC_060946.1 JAKCWS010000335.1 98.17 True local misassembly 3165553 3169609 4800854 4804909 NC_060946.1 JAKCWS010000335.1 97.52 True CONTIG JAKCWS010000335.1 4804909 misassembled 4102431 4131881 1 29524 NC_060945.1 JAKCWS010000328.1 98.69 True CONTIG JAKCWS010000328.1 29524 correct 92870910 92901071 1 29480 NC_060927.1 JAKCWS010000329.1 97.27 True CONTIG JAKCWS010000329.1 29480 correct 5683233 5712520 41 29403 NC_060946.1 JAKCWS010000330.1 98.94 True CONTIG JAKCWS010000330.1 29403 correct 5575329 5578913 3600 1 NC_060945.1 JAKCWS010000331.1 97.6 True indel: indel (> 5bp) 5573893 5575203 5022 3735 NC_060945.1 JAKCWS010000331.1 95.3 True translocation 5524818 5548946 29398 5167 NC_060946.1 JAKCWS010000331.1 98.63 True CONTIG JAKCWS010000331.1 29398 misassembled 5490596 5519161 29386 801 NC_060945.1 JAKCWS010000332.1 98.88 True CONTIG JAKCWS010000332.1 29386 correct 5682890 5683675 954 152 NC_060946.1 JAKCWS010000333.1 95.66 True translocation 2753807 2782189 29269 955 NC_060938.1 JAKCWS010000333.1 98.96 True CONTIG JAKCWS010000333.1 29269 misassembled 5597311 5626388 1 29111 NC_060946.1 JAKCWS010000334.1 99.39 True CONTIG JAKCWS010000334.1 29111 correct 9219040 9248049 28991 1 NC_060937.1 JAKCWS010000336.1 99.61 True CONTIG JAKCWS010000336.1 28991 correct 5575329 5576322 995 4 NC_060945.1 JAKCWS010000337.1 97.8 True indel: indel (> 5bp) 5573893 5575203 2417 1128 NC_060945.1 JAKCWS010000337.1 95.23 True translocation 5088932 5115208 28946 2554 NC_060946.1 JAKCWS010000337.1 98.74 True CONTIG JAKCWS010000337.1 28946 misassembled 11066603 11095485 1 28881 NC_060945.1 JAKCWS010000338.1 99.5 True CONTIG JAKCWS010000338.1 28881 correct 13798907 13827670 1 28776 NC_060938.1 JAKCWS010000339.1 99.84 True CONTIG JAKCWS010000339.1 28776 correct 5104336 5133062 1 28773 NC_060946.1 JAKCWS010000340.1 99.57 True CONTIG JAKCWS010000340.1 28773 correct 4572481 4580044 1 7572 NC_060939.1 JAKCWS010000341.1 98.71 True indel: indel (> 5bp) 4580306 4601048 7869 28674 NC_060939.1 JAKCWS010000341.1 98.9 True CONTIG JAKCWS010000341.1 28674 correct 58361716 58390207 1 28491 NC_060930.1 JAKCWS010000342.1 98.52 True CONTIG JAKCWS010000342.1 28502 correct 4154827 4182933 28169 1 NC_060945.1 JAKCWS010000343.1 98.89 True CONTIG JAKCWS010000343.1 28386 correct 134635136 134663426 1 28298 NC_060934.1 JAKCWS010000344.1 99.91 True CONTIG JAKCWS010000344.1 28298 correct 5605219 5633507 28294 1 NC_060946.1 JAKCWS010000345.1 99.4 True CONTIG JAKCWS010000345.1 28294 correct 3921688 3932770 1 10969 NC_060945.1 JAKCWS010000346.1 98.25 True local misassembly 3933484 3949985 11689 28260 NC_060945.1 JAKCWS010000346.1 98.34 True CONTIG JAKCWS010000346.1 28260 correct 6837642 6865876 28232 1 NC_060938.1 JAKCWS010000347.1 99.96 True CONTIG JAKCWS010000347.1 28232 correct 5646493 5674639 28179 7 NC_060946.1 JAKCWS010000348.1 98.91 True CONTIG JAKCWS010000348.1 28179 correct 5595937 5624037 28146 1 NC_060946.1 JAKCWS010000349.1 99.28 True CONTIG JAKCWS010000349.1 28146 correct 9309249 9337063 28001 1 NC_060937.1 JAKCWS010000350.1 98.61 True CONTIG JAKCWS010000350.1 28041 correct 9856319 9884305 27988 1 NC_060945.1 JAKCWS010000351.1 99.99 True CONTIG JAKCWS010000351.1 27988 correct 15599537 15605314 541 6318 NC_060937.1 JAKCWS010000352.1 99.97 True local misassembly 15607527 15613304 8531 14308 NC_060937.1 JAKCWS010000352.1 100.0 True relocation, inconsistency = -9860 15607527 15613304 18391 24168 NC_060937.1 JAKCWS010000352.1 99.97 True indel: stretch of mismatches 15613305 15616991 24169 27855 NC_060937.1 JAKCWS010000352.1 100.0 True CONTIG JAKCWS010000352.1 27855 misassembled 43640107 43667941 1 27828 NC_060932.1 JAKCWS010000353.1 99.82 True CONTIG JAKCWS010000353.1 27828 correct 9237401 9265086 1 27749 NC_060937.1 JAKCWS010000354.1 99.13 True CONTIG JAKCWS010000354.1 27749 correct 4240402 4268052 27705 1 NC_060945.1 JAKCWS010000355.1 98.63 True CONTIG JAKCWS010000355.1 27705 correct 58362456 58389605 27150 4 NC_060930.1 JAKCWS010000356.1 98.5 True CONTIG JAKCWS010000356.1 27629 correct 5527562 5529353 1 1796 NC_060945.1 JAKCWS010000357.1 98.7 True translocation 4444915 4470900 1797 27618 NC_060939.1 JAKCWS010000357.1 98.27 True CONTIG JAKCWS010000357.1 27618 misassembled 5347525 5374924 27525 1 NC_060946.1 JAKCWS010000358.1 98.47 True CONTIG JAKCWS010000358.1 27525 correct 4913609 4940984 27516 1 NC_060946.1 JAKCWS010000359.1 98.5 True CONTIG JAKCWS010000359.1 27516 correct 424543 426132 1664 76 NC_060939.1 JAKCWS010000360.1 99.54 True local misassembly 409021 422023 14669 1665 NC_060939.1 JAKCWS010000360.1 98.92 True translocation 5054527 5067275 27419 14670 NC_060938.1 JAKCWS010000360.1 99.98 True CONTIG JAKCWS010000360.1 27419 misassembled 5513997 5541471 1 27408 NC_060945.1 JAKCWS010000361.1 98.81 True CONTIG JAKCWS010000361.1 27408 correct 2998443 2999209 1 767 NC_060946.1 JAKCWS010000371.1 96.48 True translocation 4826026 4829007 2271 5249 NC_060937.1 JAKCWS010000371.1 96.82 True relocation, inconsistency = -4039752 789811 791654 5805 7645 NC_060937.1 JAKCWS010000371.1 96.03 True translocation 1559425 1560761 7646 8982 NC_060945.1 JAKCWS010000371.1 96.94 True translocation 964417 967709 8983 12272 NC_060937.1 JAKCWS010000371.1 97.02 True relocation, inconsistency = 43798 1011508 1013346 12273 14111 NC_060937.1 JAKCWS010000371.1 96.62 True translocation 92852995 92854375 14112 15492 NC_060927.1 JAKCWS010000371.1 97.71 True translocation 3297530 3298489 16162 17121 NC_060937.1 JAKCWS010000371.1 96.88 True relocation, inconsistency = -1300383 1998183 1999917 17198 18932 NC_060937.1 JAKCWS010000371.1 98.44 True translocation 92738643 92741957 19331 22656 NC_060927.1 JAKCWS010000371.1 96.55 True translocation 1125948 1127534 22980 24565 NC_060937.1 JAKCWS010000371.1 96.36 True translocation 3299398 3304592 24655 29847 NC_060946.1 JAKCWS010000371.1 95.53 True translocation 1278088 1278918 29848 30678 NC_060939.1 JAKCWS010000371.1 97.26 True relocation, inconsistency = 85157 1365291 1369661 31894 36265 NC_060939.1 JAKCWS010000371.1 96.69 True local misassembly 1368659 1371308 36266 38925 NC_060939.1 JAKCWS010000371.1 96.48 True translocation 3407556 3409458 39241 41143 NC_060946.1 JAKCWS010000371.1 97.74 True local misassembly 3409837 3411541 41144 42848 NC_060946.1 JAKCWS010000371.1 97.71 True indel: indel (<= 5bp) 3411542 3412787 42854 44099 NC_060946.1 JAKCWS010000371.1 97.67 True translocation 1367335 1369661 44332 46667 NC_060939.1 JAKCWS010000371.1 96.83 True local misassembly 1368659 1369583 46668 47592 NC_060939.1 JAKCWS010000371.1 98.93 True translocation 95253754 95256552 49108 51907 NC_060927.1 JAKCWS010000371.1 97.0 True translocation 3407813 3409458 51908 53553 NC_060946.1 JAKCWS010000371.1 97.74 True local misassembly 3409837 3411541 53554 55258 NC_060946.1 JAKCWS010000371.1 97.54 True indel: indel (<= 5bp) 3411542 3412173 55264 55895 NC_060946.1 JAKCWS010000371.1 97.51 True relocation, inconsistency = -40617 3371557 3382140 55896 66476 NC_060946.1 JAKCWS010000371.1 97.71 True local misassembly 3388152 3396139 66477 74448 NC_060946.1 JAKCWS010000371.1 97.25 True translocation 4731262 4734645 77839 74449 NC_060937.1 JAKCWS010000371.1 95.99 True translocation 1777625 1780758 78288 81422 NC_060945.1 JAKCWS010000371.1 96.11 True translocation 95010226 95011854 83052 84669 NC_060927.1 JAKCWS010000371.1 95.58 True translocation 789811 791850 86056 88092 NC_060937.1 JAKCWS010000371.1 96.03 True fake: not a misassembly (possible transposable element) 408542 409452 88339 89244 NC_060937.1 JAKCWS010000371.1 96.6 True fake: not a misassembly (possible transposable element) 789954 791081 90746 91870 NC_060937.1 JAKCWS010000371.1 95.57 True local misassembly 789811 791395 93522 95103 NC_060937.1 JAKCWS010000371.1 95.84 True translocation 3463062 3467371 95524 99785 NC_060946.1 JAKCWS010000371.1 96.32 True translocation 469049 472017 99786 102759 NC_060937.1 JAKCWS010000371.1 96.63 True translocation 1422586 1426174 102760 106350 NC_060939.1 JAKCWS010000371.1 96.64 True translocation 619375 620502 108177 109304 NC_060937.1 JAKCWS010000371.1 96.86 True translocation 94846161 94848874 109305 112018 NC_060927.1 JAKCWS010000371.1 97.49 True translocation 1422586 1425783 112323 115525 NC_060939.1 JAKCWS010000371.1 97.01 True fake: not a misassembly (possible transposable element) 959557 962353 115526 118327 NC_060937.1 JAKCWS010000371.1 95.91 True fake: not a misassembly (possible transposable element) 1423913 1426012 118328 120427 NC_060939.1 JAKCWS010000371.1 96.41 True relocation, inconsistency = 9077 1435128 1438740 120466 124071 NC_060939.1 JAKCWS010000371.1 96.49 True translocation 3356288 3360178 124166 128101 NC_060937.1 JAKCWS010000371.1 95.39 True translocation 3433230 3435450 128102 130317 NC_060946.1 JAKCWS010000371.1 96.32 True translocation 1472548 1475177 130580 133217 NC_060939.1 JAKCWS010000371.1 96.25 True local misassembly 1473367 1475177 134447 136262 NC_060939.1 JAKCWS010000371.1 97.08 True translocation 1178921 1181537 136971 139583 NC_060937.1 JAKCWS010000371.1 96.79 True translocation 3127203 3130294 140074 143172 NC_060946.1 JAKCWS010000371.1 96.0 True local misassembly 3126926 3133764 143173 149993 NC_060946.1 JAKCWS010000371.1 96.28 True translocation 1369170 1374554 149994 155388 NC_060939.1 JAKCWS010000371.1 96.13 True local misassembly 1375684 1378768 155389 158463 NC_060939.1 JAKCWS010000371.1 97.53 True translocation 94626712 94629392 159057 161733 NC_060927.1 JAKCWS010000371.1 97.5 True relocation, inconsistency = 465497 95094954 95096849 161798 163698 NC_060927.1 JAKCWS010000371.1 97.25 True relocation, inconsistency = -244599 94852251 94854801 163699 166244 NC_060927.1 JAKCWS010000371.1 95.62 True translocation 4961043 4967075 166258 172283 NC_060937.1 JAKCWS010000371.1 96.77 True translocation 94818533 94820259 172284 174010 NC_060927.1 JAKCWS010000371.1 96.75 True relocation, inconsistency = -8973 94811287 94818213 174011 180936 NC_060927.1 JAKCWS010000371.1 96.67 True relocation, inconsistency = -29661 94788553 94794411 180937 186794 NC_060927.1 JAKCWS010000371.1 96.16 True translocation 3440865 3446286 187354 192789 NC_060946.1 JAKCWS010000371.1 97.15 True local misassembly 3441419 3444425 192790 195797 NC_060946.1 JAKCWS010000371.1 98.73 True translocation 1375729 1377980 195977 198228 NC_060939.1 JAKCWS010000371.1 98.76 True translocation 95245709 95246590 198229 199110 NC_060927.1 JAKCWS010000371.1 96.87 True indel: stretch of mismatches 95246971 95249293 199491 201813 NC_060927.1 JAKCWS010000371.1 96.56 True indel: indel (<= 5bp) 95249295 95249972 201814 202491 NC_060927.1 JAKCWS010000371.1 96.76 True local misassembly 95250724 95252049 202865 204190 NC_060927.1 JAKCWS010000371.1 98.34 True translocation 1373901 1374434 204362 204895 NC_060945.1 JAKCWS010000371.1 95.88 True indel: indel (<= 5bp) 1374439 1375567 204896 206024 NC_060945.1 JAKCWS010000371.1 98.32 True translocation 2964107 2966377 206046 208316 NC_060946.1 JAKCWS010000371.1 97.36 True translocation 95017307 95019940 209246 211855 NC_060927.1 JAKCWS010000371.1 96.56 True translocation 1435661 1440879 211856 217066 NC_060939.1 JAKCWS010000371.1 96.12 True translocation 1282789 1287929 217762 222904 NC_060945.1 JAKCWS010000371.1 96.58 True relocation, inconsistency = 528218 1818153 1818674 224910 225431 NC_060945.1 JAKCWS010000371.1 97.32 True translocation 95335533 95336886 225541 226894 NC_060927.1 JAKCWS010000371.1 97.27 True translocation 1540500 1541177 227479 228159 NC_060945.1 JAKCWS010000371.1 96.92 True translocation 95345579 95346155 228501 229077 NC_060927.1 JAKCWS010000371.1 97.05 True local misassembly 95344472 95345551 231333 232412 NC_060927.1 JAKCWS010000371.1 96.39 True translocation 1100916 1101474 233292 233851 NC_060937.1 JAKCWS010000371.1 97.32 True translocation 1559187 1560123 235373 236309 NC_060945.1 JAKCWS010000371.1 96.69 True indel: indel (<= 5bp) 1560385 1561419 236566 237600 NC_060945.1 JAKCWS010000371.1 95.65 True indel: indel (> 5bp) 1561462 1561997 237601 238136 NC_060945.1 JAKCWS010000371.1 96.83 True translocation 1526564 1527737 239890 241063 NC_060939.1 JAKCWS010000371.1 98.13 True local misassembly 1528242 1529654 241064 242476 NC_060939.1 JAKCWS010000371.1 99.72 True translocation 1310093 1407792 243778 341766 NC_060938.1 JAKCWS010000371.1 99.27 True translocation 95461655 95474747 341767 354859 NC_060927.1 JAKCWS010000371.1 98.51 True translocation 1635803 1971819 354860 692300 NC_060939.1 JAKCWS010000371.1 98.86 True translocation 3943315 4021128 692301 769132 NC_060946.1 JAKCWS010000371.1 98.17 True translocation 2342787 2912432 769133 1339499 NC_060945.1 JAKCWS010000371.1 99.47 True indel: indel (> 5bp) 2912506 3109620 1339585 1536722 NC_060945.1 JAKCWS010000371.1 99.19 True translocation 2101101 2117493 1536723 1553106 NC_060938.1 JAKCWS010000371.1 99.17 True indel: indel (> 5bp) 2117794 2161765 1553369 1597278 NC_060938.1 JAKCWS010000371.1 99.16 True translocation, scaffold gap is present 3976666 4085048 1668438 1776572 NC_060939.1 JAKCWS010000371.1 98.86 True indel: indel (> 5bp) 4085355 4099665 1776810 1791285 NC_060939.1 JAKCWS010000371.1 97.31 True local misassembly 4099855 4157141 1791286 1848471 NC_060939.1 JAKCWS010000371.1 99.11 True relocation, scaffold gap is present, inconsistency = -101455 4055700 4175683 1848485 1968467 NC_060939.1 JAKCWS010000371.1 99.2 True relocation, inconsistency = -46488 4129775 4175683 1969047 2014948 NC_060939.1 JAKCWS010000371.1 99.27 True translocation 9215267 9241946 2015383 2042124 NC_060937.1 JAKCWS010000371.1 98.97 True translocation, scaffold gap is present 4354307 4428120 2042138 2115733 NC_060939.1 JAKCWS010000371.1 98.97 True indel: indel (> 5bp) 4428252 4517968 2115853 2205673 NC_060939.1 JAKCWS010000371.1 98.91 True translocation, scaffold gap is present 1696958 2083660 2595740 2206174 NC_060938.1 JAKCWS010000371.1 97.16 True fake: not a misassembly (possible transposable element) 2086931 2090918 2599725 2595741 NC_060939.1 JAKCWS010000371.1 98.54 True fake: not a misassembly (possible transposable element) 1664144 1693617 2631404 2600996 NC_060938.1 JAKCWS010000371.1 96.24 True translocation 3902193 4029106 2755405 2631405 NC_060946.1 JAKCWS010000371.1 96.97 True relocation, inconsistency = -144027 4044257 4045757 2757368 2755868 NC_060946.1 JAKCWS010000371.1 99.73 True indel: indel (<= 5bp) 4042561 4044252 2759060 2757369 NC_060946.1 JAKCWS010000371.1 99.65 True local misassembly 4040247 4042269 2761083 2759061 NC_060946.1 JAKCWS010000371.1 99.41 True indel: indel (> 5bp) 4039074 4040108 2762271 2761237 NC_060946.1 JAKCWS010000371.1 98.84 True indel: indel (> 5bp) 4037656 4039060 2763676 2762272 NC_060946.1 JAKCWS010000371.1 98.79 True indel: indel (<= 5bp) 4035834 4037655 2765500 2763679 NC_060946.1 JAKCWS010000371.1 98.9 True local misassembly 4033793 4035833 2767688 2765648 NC_060946.1 JAKCWS010000371.1 99.36 True indel: indel (> 5bp) 4033126 4033737 2768332 2767721 NC_060946.1 JAKCWS010000371.1 99.18 True indel: indel (<= 5bp) 4031267 4033124 2770190 2768333 NC_060946.1 JAKCWS010000371.1 99.25 True indel: indel (<= 5bp) 4029484 4031175 2771969 2770278 NC_060946.1 JAKCWS010000371.1 99.82 True indel: indel (<= 5bp) 4001800 4029106 2798767 2772350 NC_060946.1 JAKCWS010000371.1 96.2 True relocation, inconsistency = 199982 3716254 3801817 2884276 2798768 NC_060946.1 JAKCWS010000371.1 99.41 True indel: indel (<= 5bp) 3495390 3716176 3105122 2884352 NC_060946.1 JAKCWS010000371.1 99.8 True translocation 1505154 1506222 3106191 3105123 NC_060939.1 JAKCWS010000371.1 98.19 True translocation 95289626 95293978 3110666 3106313 NC_060927.1 JAKCWS010000371.1 97.96 True translocation 3472999 3475497 3113164 3110667 NC_060946.1 JAKCWS010000371.1 99.74 True relocation, inconsistency = 15709 3452496 3457257 3117961 3113197 NC_060946.1 JAKCWS010000371.1 98.97 True local misassembly 3453006 3453744 3118700 3117962 NC_060946.1 JAKCWS010000371.1 99.81 True indel: indel (<= 5bp) 3446928 3453003 3124776 3118701 NC_060946.1 JAKCWS010000371.1 99.95 True local misassembly 3444858 3446176 3126095 3124777 NC_060946.1 JAKCWS010000371.1 97.18 True indel: indel (<= 5bp) 3441066 3444857 3129892 3126101 NC_060946.1 JAKCWS010000371.1 99.24 True local misassembly 3434843 3437306 3132356 3129893 NC_060946.1 JAKCWS010000371.1 99.43 True local misassembly 3435072 3435588 3132873 3132357 NC_060946.1 JAKCWS010000371.1 97.07 True indel: indel (<= 5bp) 3434200 3434848 3133749 3133101 NC_060946.1 JAKCWS010000371.1 99.54 True local misassembly 3433340 3434199 3134982 3134123 NC_060946.1 JAKCWS010000371.1 100.0 True indel: indel (<= 5bp) 3420703 3433338 3147618 3134983 NC_060946.1 JAKCWS010000371.1 99.91 True local misassembly 3418702 3419736 3148653 3147619 NC_060946.1 JAKCWS010000371.1 99.61 True relocation, inconsistency = 17860 3395884 3399502 3153611 3149993 NC_060946.1 JAKCWS010000371.1 98.31 True local misassembly 3391715 3395505 3157402 3153612 NC_060946.1 JAKCWS010000371.1 98.1 True local misassembly 3387979 3391336 3160760 3157403 NC_060946.1 JAKCWS010000371.1 99.64 True indel: indel (<= 5bp) 3387088 3387978 3161652 3160762 NC_060946.1 JAKCWS010000371.1 98.09 True relocation, inconsistency = -22206 3407988 3409157 3162958 3161789 NC_060946.1 JAKCWS010000371.1 99.81 True local misassembly 3395884 3406102 3173177 3162959 NC_060946.1 JAKCWS010000371.1 99.9 True local misassembly 3392349 3395505 3176334 3173178 NC_060946.1 JAKCWS010000371.1 97.78 True indel: indel (<= 5bp) 3391739 3392343 3176939 3176335 NC_060946.1 JAKCWS010000371.1 97.52 True local misassembly 3391598 3392357 3177830 3177071 NC_060946.1 JAKCWS010000371.1 97.63 True indel: indel (<= 5bp) 3387585 3391592 3181838 3177831 NC_060946.1 JAKCWS010000371.1 99.28 True fake: not a misassembly (possible transposable element) 3406658 3410516 3186100 3182242 NC_060946.1 JAKCWS010000371.1 98.99 True fake: not a misassembly (possible transposable element) 3374687 3377688 3189102 3186101 NC_060946.1 JAKCWS010000371.1 98.79 True local misassembly 3371081 3377317 3195339 3189103 NC_060946.1 JAKCWS010000371.1 99.81 True local misassembly 3369893 3371080 3197656 3196469 NC_060946.1 JAKCWS010000371.1 100.0 True local misassembly 3338544 3367256 3227256 3197657 NC_060946.1 JAKCWS010000371.1 96.37 True local misassembly 3340802 3341554 3228009 3227257 NC_060946.1 JAKCWS010000371.1 99.67 True local misassembly 3339077 3340801 3230112 3228388 NC_060946.1 JAKCWS010000371.1 98.96 True relocation, inconsistency = 579984 2758067 2759092 3231136 3230113 NC_060946.1 JAKCWS010000371.1 96.83 True relocation, inconsistency = -180711 2934595 2938357 3235316 3231557 NC_060946.1 JAKCWS010000371.1 96.37 True relocation, inconsistency = -408714 3323678 3343308 3254527 3235317 NC_060946.1 JAKCWS010000371.1 97.45 True local misassembly 3325776 3327427 3256179 3254528 NC_060946.1 JAKCWS010000371.1 98.4 True indel: indel (<= 5bp) 3324656 3325493 3257304 3256467 NC_060946.1 JAKCWS010000371.1 99.4 True local misassembly 3317798 3323904 3263411 3257305 NC_060946.1 JAKCWS010000371.1 99.43 True local misassembly 3314495 3321930 3270847 3263412 NC_060946.1 JAKCWS010000371.1 99.64 True local misassembly 3311223 3314226 3275621 3272618 NC_060946.1 JAKCWS010000371.1 99.87 True local misassembly 3306561 3311222 3281034 3276373 NC_060946.1 JAKCWS010000371.1 99.89 True local misassembly 3303664 3306220 3284310 3281754 NC_060946.1 JAKCWS010000371.1 100.0 True local misassembly 3295508 3303285 3292088 3284311 NC_060946.1 JAKCWS010000371.1 99.92 True local misassembly 3290626 3292876 3294339 3292089 NC_060946.1 JAKCWS010000371.1 99.04 True local misassembly 3286387 3290625 3298956 3294718 NC_060946.1 JAKCWS010000371.1 99.72 True local misassembly 3281037 3287328 3306572 3300451 NC_060946.1 JAKCWS010000371.1 96.88 True local misassembly 3267547 3282338 3320987 3306573 NC_060946.1 JAKCWS010000371.1 97.33 True fake: not a misassembly (possible transposable element) 1232343 1234300 3323099 3321142 NC_060937.1 JAKCWS010000371.1 98.89 True fake: not a misassembly (possible transposable element) 3260889 3268080 3330291 3323100 NC_060946.1 JAKCWS010000371.1 99.62 True relocation, inconsistency = 12977 3233635 3247911 3344568 3330292 NC_060946.1 JAKCWS010000371.1 99.49 True relocation, inconsistency = 17130 3215251 3216504 3345822 3344569 NC_060946.1 JAKCWS010000371.1 99.03 True indel: indel (<= 5bp) 3214579 3215250 3346495 3345824 NC_060946.1 JAKCWS010000371.1 96.43 True local misassembly 3204998 3207464 3349314 3346848 NC_060946.1 JAKCWS010000371.1 99.59 True local misassembly 3203108 3204256 3350994 3349846 NC_060946.1 JAKCWS010000371.1 97.21 True local misassembly 3201350 3202238 3352584 3351696 NC_060946.1 JAKCWS010000371.1 97.75 True indel: indel (<= 5bp) 3194981 3201348 3358952 3352585 NC_060946.1 JAKCWS010000371.1 99.42 True local misassembly 3191107 3194980 3363204 3359331 NC_060946.1 JAKCWS010000371.1 99.74 True local misassembly 3180273 3192172 3375539 3363646 NC_060946.1 JAKCWS010000371.1 99.66 True local misassembly 3162382 3183275 3396804 3375540 NC_060946.1 JAKCWS010000371.1 97.17 True translocation 1131074 1141371 3407154 3396805 NC_060937.1 JAKCWS010000371.1 98.98 True relocation, inconsistency = 13251 1114997 1117822 3409980 3407155 NC_060937.1 JAKCWS010000371.1 99.56 True indel: indel (> 5bp) 1114382 1114881 3410589 3410090 NC_060937.1 JAKCWS010000371.1 96.6 True local misassembly 1111389 1112874 3412075 3410590 NC_060937.1 JAKCWS010000371.1 99.33 True indel: indel (<= 5bp) 1109175 1111386 3414287 3412076 NC_060937.1 JAKCWS010000371.1 99.64 True local misassembly 1106716 1108801 3416373 3414288 NC_060937.1 JAKCWS010000371.1 99.38 True translocation 3106559 3122896 3433142 3416805 NC_060946.1 JAKCWS010000371.1 99.89 True local misassembly 3091645 3104880 3446382 3433143 NC_060946.1 JAKCWS010000371.1 99.71 True local misassembly 3084350 3087090 3449881 3447141 NC_060946.1 JAKCWS010000371.1 99.47 True local misassembly 3078681 3083598 3454799 3449882 NC_060946.1 JAKCWS010000371.1 98.68 True local misassembly 3057534 3083936 3481579 3454800 NC_060946.1 JAKCWS010000371.1 98.32 True local misassembly 3045180 3061661 3498061 3481580 NC_060946.1 JAKCWS010000371.1 99.87 True local misassembly 3043981 3045179 3499637 3498439 NC_060946.1 JAKCWS010000371.1 99.83 True local misassembly 3038503 3043980 3509586 3504109 NC_060946.1 JAKCWS010000371.1 99.96 True relocation, inconsistency = -255124 3290965 3292712 3512248 3510501 NC_060946.1 JAKCWS010000371.1 99.94 True local misassembly 3286387 3290964 3517204 3512627 NC_060946.1 JAKCWS010000371.1 99.61 True fake: not a misassembly (possible transposable element) 375510 376617 3518312 3517205 NC_060937.1 JAKCWS010000371.1 97.68 True fake: not a misassembly (possible transposable element) 3285516 3287336 3520133 3518313 NC_060946.1 JAKCWS010000371.1 98.74 True local misassembly 3283193 3285137 3522078 3520134 NC_060946.1 JAKCWS010000371.1 99.47 True local misassembly 3276333 3282268 3528014 3522079 NC_060946.1 JAKCWS010000371.1 99.81 True relocation, inconsistency = 36787 3237194 3239545 3530366 3528015 NC_060946.1 JAKCWS010000371.1 97.6 True local misassembly 3216790 3231440 3545564 3530367 NC_060946.1 JAKCWS010000371.1 95.96 True local misassembly 3207629 3211876 3549812 3545565 NC_060946.1 JAKCWS010000371.1 99.69 True local misassembly 3206738 3207457 3550870 3550151 NC_060946.1 JAKCWS010000371.1 98.89 True local misassembly 3204998 3206737 3552988 3551249 NC_060946.1 JAKCWS010000371.1 99.48 True local misassembly 3203108 3204256 3554668 3553520 NC_060946.1 JAKCWS010000371.1 97.21 True local misassembly 3201350 3202238 3556258 3555370 NC_060946.1 JAKCWS010000371.1 97.64 True indel: indel (<= 5bp) 3199814 3201348 3557793 3556259 NC_060946.1 JAKCWS010000371.1 97.98 True local misassembly 3194981 3199813 3563004 3558172 NC_060946.1 JAKCWS010000371.1 99.86 True local misassembly 3191107 3194980 3567256 3563383 NC_060946.1 JAKCWS010000371.1 99.72 True indel: indel (<= 5bp) 3190357 3191106 3568011 3567262 NC_060946.1 JAKCWS010000371.1 95.33 True local misassembly 3187294 3189604 3571819 3569509 NC_060946.1 JAKCWS010000371.1 99.84 True local misassembly 3169610 3185035 3587626 3571820 NC_060946.1 JAKCWS010000371.1 96.88 True CONTIG JAKCWS010000371.1 3587626 misassembled 58775941 58801610 25570 1 NC_060931.1 JAKCWS010000362.1 98.92 True local misassembly 58779900 58781635 27306 25571 NC_060931.1 JAKCWS010000362.1 99.49 True CONTIG JAKCWS010000362.1 27306 correct 5546232 5573389 27186 1 NC_060945.1 JAKCWS010000363.1 99.31 True CONTIG JAKCWS010000363.1 27186 correct 5527865 5548946 26 21199 NC_060946.1 JAKCWS010000364.1 98.5 True translocation 5573893 5575203 21344 22630 NC_060945.1 JAKCWS010000364.1 95.38 True indel: indel (> 5bp) 5575329 5579683 22765 27147 NC_060945.1 JAKCWS010000364.1 97.96 True CONTIG JAKCWS010000364.1 27147 misassembled 1145081 1169797 1 24699 NC_060939.1 JAKCWS010000365.1 99.64 True translocation 1186285 1187317 24700 25727 NC_060945.1 JAKCWS010000365.1 97.37 True local misassembly 1191884 1193184 25732 27022 NC_060945.1 JAKCWS010000365.1 98.09 True CONTIG JAKCWS010000365.1 27022 misassembled 16808556 16816739 8184 1 NC_060939.1 JAKCWS010000366.1 99.82 True relocation, inconsistency = -10228 16804805 16818783 21654 8185 NC_060939.1 JAKCWS010000366.1 96.12 True relocation, inconsistency = -9719 16809180 16814523 26998 21655 NC_060939.1 JAKCWS010000366.1 99.92 True CONTIG JAKCWS010000366.1 26998 misassembled 68431438 68458433 26996 1 NC_060927.1 JAKCWS010000367.1 100.0 True CONTIG JAKCWS010000367.1 26996 correct 5595057 5621947 1 26933 NC_060946.1 JAKCWS010000368.1 99.29 True CONTIG JAKCWS010000368.1 26933 correct 9223275 9250081 1 26803 NC_060937.1 JAKCWS010000369.1 99.67 True CONTIG JAKCWS010000369.1 26850 correct 3889099 3898894 9845 1 NC_060945.1 JAKCWS010000370.1 97.62 True local misassembly 3887671 3888385 11267 10568 NC_060945.1 JAKCWS010000370.1 95.68 True local misassembly 3872004 3887419 26831 11410 NC_060945.1 JAKCWS010000370.1 99.35 True CONTIG JAKCWS010000370.1 26831 correct 2653542 2680909 26818 1 NC_060925.1 JAKCWS010000372.1 95.61 True CONTIG JAKCWS010000372.1 26818 correct 5597692 5624420 10 26767 NC_060946.1 JAKCWS010000373.1 99.36 True CONTIG JAKCWS010000373.1 26767 correct 5349275 5375931 1 26717 NC_060945.1 JAKCWS010000374.1 98.54 True CONTIG JAKCWS010000374.1 26717 correct 2438377 2465018 26646 1 NC_060938.1 JAKCWS010000375.1 99.72 True CONTIG JAKCWS010000375.1 26646 correct 5491510 5513299 1 21816 NC_060945.1 JAKCWS010000376.1 99.0 True translocation 9339359 9344139 21817 26578 NC_060937.1 JAKCWS010000376.1 98.64 True CONTIG JAKCWS010000376.1 26578 misassembled 5598266 5624732 26504 1 NC_060946.1 JAKCWS010000377.1 99.34 True CONTIG JAKCWS010000377.1 26504 correct 4444278 4470709 7 26450 NC_060939.1 JAKCWS010000378.1 99.14 True CONTIG JAKCWS010000378.1 26450 correct 5490105 5513299 1 23246 NC_060945.1 JAKCWS010000379.1 98.98 True translocation 9199267 9202451 23247 26440 NC_060937.1 JAKCWS010000379.1 96.84 True CONTIG JAKCWS010000379.1 26440 misassembled 2389288 2415725 1 26405 NC_060938.1 JAKCWS010000380.1 99.43 True CONTIG JAKCWS010000380.1 26405 correct 50044526 50049025 4496 1 NC_060928.1 JAKCWS010000381.1 99.15 True local misassembly 50040455 50050989 15025 4497 NC_060928.1 JAKCWS010000381.1 99.09 True local misassembly 50044526 50046918 17416 15026 NC_060928.1 JAKCWS010000381.1 99.09 True local misassembly 50042098 50050989 26304 17417 NC_060928.1 JAKCWS010000381.1 99.15 True CONTIG JAKCWS010000381.1 26304 correct 9212049 9238305 1 26287 NC_060937.1 JAKCWS010000382.1 99.03 True CONTIG JAKCWS010000382.1 26287 correct 9218344 9244458 1 26200 NC_060937.1 JAKCWS010000383.1 99.17 True CONTIG JAKCWS010000383.1 26200 correct 5488994 5513299 1 24367 NC_060945.1 JAKCWS010000384.1 98.96 True relocation, inconsistency = 92776 5606195 5607873 24487 26164 NC_060945.1 JAKCWS010000384.1 99.11 True CONTIG JAKCWS010000384.1 26164 misassembled 100164629 100174593 9966 1 NC_060938.1 JAKCWS010000385.1 99.32 True indel: indel (<= 5bp) 100157180 100164596 17489 9996 NC_060938.1 JAKCWS010000385.1 97.37 True relocation, inconsistency = 20986 100127535 100136188 26148 17495 NC_060938.1 JAKCWS010000385.1 99.88 True CONTIG JAKCWS010000385.1 26148 misassembled 136977405 137002964 25994 1 NC_060928.1 JAKCWS010000386.1 98.08 True CONTIG JAKCWS010000386.1 25994 correct 92562340 92588676 1 25985 NC_060927.1 JAKCWS010000387.1 98.3 True CONTIG JAKCWS010000387.1 25985 correct 61661154 61666805 7004 1353 NC_060931.1 JAKCWS010000388.1 99.79 True relocation, inconsistency = -9198 61661542 61670351 15814 7005 NC_060931.1 JAKCWS010000388.1 99.93 True relocation, inconsistency = -31682 61690341 61693223 18697 15815 NC_060931.1 JAKCWS010000388.1 99.85 True local misassembly 61681037 61688296 25957 18698 NC_060931.1 JAKCWS010000388.1 99.96 True CONTIG JAKCWS010000388.1 25957 misassembled 9220883 9246763 25865 1 NC_060937.1 JAKCWS010000389.1 99.67 True CONTIG JAKCWS010000389.1 25865 correct 9180979 9206673 25695 1 NC_060937.1 JAKCWS010000390.1 99.21 True CONTIG JAKCWS010000390.1 25695 correct 5521781 5547310 25619 1 NC_060946.1 JAKCWS010000391.1 98.6 True CONTIG JAKCWS010000391.1 25619 correct 5514207 5539835 25591 1 NC_060945.1 JAKCWS010000392.1 99.08 True CONTIG JAKCWS010000392.1 25591 correct 58855445 58880945 1 25500 NC_060931.1 JAKCWS010000393.1 99.99 True CONTIG JAKCWS010000393.1 25500 correct 56363170 56388539 25359 1 NC_060937.1 JAKCWS010000394.1 99.91 True CONTIG JAKCWS010000394.1 25359 correct 9243869 9269152 1 25317 NC_060937.1 JAKCWS010000395.1 99.5 True CONTIG JAKCWS010000395.1 25317 correct 4243660 4268792 25222 1 NC_060945.1 JAKCWS010000396.1 98.93 True CONTIG JAKCWS010000396.1 25222 correct 9208062 9233201 25178 1 NC_060937.1 JAKCWS010000397.1 99.1 True CONTIG JAKCWS010000397.1 25178 correct 2791879 2816827 1 24906 NC_060938.1 JAKCWS010000398.1 98.58 True CONTIG JAKCWS010000398.1 24906 correct 4671123 4695988 1 24891 NC_060939.1 JAKCWS010000399.1 99.36 True CONTIG JAKCWS010000399.1 24891 correct 4671867 4696681 24852 1 NC_060939.1 JAKCWS010000400.1 99.46 True CONTIG JAKCWS010000400.1 24852 correct 5327923 5352524 1 24658 NC_060946.1 JAKCWS010000401.1 99.53 True CONTIG JAKCWS010000401.1 24658 correct 4669986 4694612 11 24621 NC_060939.1 JAKCWS010000402.1 98.73 True CONTIG JAKCWS010000402.1 24621 correct 9232580 9256878 1 24284 NC_060937.1 JAKCWS010000403.1 99.71 True CONTIG JAKCWS010000403.1 24284 correct 29689066 29689641 719 144 NC_060943.1 JAKCWS010000404.1 97.05 True translocation 125957319 125957948 1642 1013 NC_060925.1 JAKCWS010000404.1 96.83 True translocation 29260503 29262541 4578 2536 NC_060943.1 JAKCWS010000404.1 96.18 True relocation, inconsistency = 27828 29230905 29232396 6348 4857 NC_060943.1 JAKCWS010000404.1 97.12 True local misassembly 29228517 29230300 8738 6955 NC_060943.1 JAKCWS010000404.1 97.09 True local misassembly 29230695 29232221 10637 9111 NC_060943.1 JAKCWS010000404.1 96.53 True relocation, inconsistency = -31904 29260579 29262525 12661 10711 NC_060943.1 JAKCWS010000404.1 95.85 True relocation, inconsistency = 60461 29198651 29199213 14128 13566 NC_060943.1 JAKCWS010000404.1 97.7 True translocation 124112175 124115512 17982 14644 NC_060925.1 JAKCWS010000404.1 98.2 True local misassembly 124112221 124114215 19977 17983 NC_060925.1 JAKCWS010000404.1 99.14 True local misassembly 124114792 124119023 24207 19978 NC_060925.1 JAKCWS010000404.1 98.37 True CONTIG JAKCWS010000404.1 24213 misassembled 4644352 4668431 24203 20 NC_060945.1 JAKCWS010000405.1 98.76 True CONTIG JAKCWS010000405.1 24203 correct 25049548 25073746 24195 1 NC_060942.1 JAKCWS010000406.1 99.69 True CONTIG JAKCWS010000406.1 24195 correct 2623262 2647468 24177 1 NC_060939.1 JAKCWS010000407.1 99.54 True CONTIG JAKCWS010000407.1 24177 correct 9105017 9106772 1 1750 NC_060937.1 JAKCWS010000408.1 98.81 True indel: indel (> 5bp) 9106896 9129131 1866 24090 NC_060937.1 JAKCWS010000408.1 98.61 True CONTIG JAKCWS010000408.1 24090 correct 4270122 4294143 24037 1 NC_060939.1 JAKCWS010000409.1 99.05 True CONTIG JAKCWS010000409.1 24037 correct 3886002 3887419 1 1425 NC_060945.1 JAKCWS010000410.1 98.67 True local misassembly 3887671 3888385 1568 2267 NC_060945.1 JAKCWS010000410.1 95.68 True local misassembly 3889099 3910051 2986 24021 NC_060945.1 JAKCWS010000410.1 98.62 True CONTIG JAKCWS010000410.1 24021 correct 2698485 2722422 1 23938 NC_060938.1 JAKCWS010000411.1 99.11 True CONTIG JAKCWS010000411.1 23938 correct 4221403 4245465 1 23875 NC_060939.1 JAKCWS010000412.1 98.41 True CONTIG JAKCWS010000412.1 23875 correct 5398952 5422598 1 23755 NC_060945.1 JAKCWS010000413.1 98.75 True CONTIG JAKCWS010000413.1 23831 correct 2737602 2757213 19703 1 NC_060938.1 JAKCWS010000414.1 99.02 True translocation 7664836 7668978 23741 19704 NC_060937.1 JAKCWS010000414.1 97.48 True CONTIG JAKCWS010000414.1 23741 misassembled 5335894 5337781 1870 1 NC_060945.1 JAKCWS010000415.1 98.73 True indel: indel (> 5bp) 5314073 5335762 23694 1986 NC_060945.1 JAKCWS010000415.1 99.08 True CONTIG JAKCWS010000415.1 23694 correct 89645730 89669312 1 23579 NC_060935.1 JAKCWS010000416.1 99.95 True CONTIG JAKCWS010000416.1 23579 correct 5093805 5115208 1 21529 NC_060946.1 JAKCWS010000417.1 98.62 True translocation 5573893 5575203 21666 22952 NC_060945.1 JAKCWS010000417.1 95.38 True CONTIG JAKCWS010000417.1 23578 misassembled 5303477 5326899 23563 1 NC_060946.1 JAKCWS010000418.1 98.39 True CONTIG JAKCWS010000418.1 23563 correct 9183936 9207352 1 23442 NC_060937.1 JAKCWS010000419.1 99.4 True CONTIG JAKCWS010000419.1 23442 correct 5082359 5105775 23401 15 NC_060946.1 JAKCWS010000420.1 99.69 True CONTIG JAKCWS010000420.1 23401 correct 89562900 89586249 1 23345 NC_060926.1 JAKCWS010000421.1 99.96 True CONTIG JAKCWS010000421.1 23345 correct 9213220 9236526 1 23319 NC_060937.1 JAKCWS010000422.1 98.97 True CONTIG JAKCWS010000422.1 23319 correct 4485872 4509175 23288 1 NC_060939.1 JAKCWS010000423.1 98.86 True CONTIG JAKCWS010000423.1 23288 correct 100297933 100321107 1 23199 NC_060938.1 JAKCWS010000424.1 99.83 True CONTIG JAKCWS010000424.1 23199 correct 2472204 2495273 23080 1 NC_060938.1 JAKCWS010000425.1 99.3 True CONTIG JAKCWS010000425.1 23080 correct 9233162 9256176 1 23033 NC_060937.1 JAKCWS010000426.1 99.16 True CONTIG JAKCWS010000426.1 23033 correct 5121067 5130199 1 9141 NC_060945.1 JAKCWS010000427.1 99.5 True local misassembly 5130448 5131165 9284 9986 NC_060945.1 JAKCWS010000427.1 95.69 True local misassembly 5131879 5144173 10707 23066 NC_060945.1 JAKCWS010000427.1 98.1 True CONTIG JAKCWS010000427.1 23066 correct 15582565 15605107 7 22550 NC_060946.1 JAKCWS010000428.1 98.7 True CONTIG JAKCWS010000428.1 22906 correct 175 4137 567 4536 NC_060946.1 JAKCWS010000429.1 97.51 True translocation 3498 18048 8345 22873 NC_060931.1 JAKCWS010000429.1 98.27 True CONTIG JAKCWS010000429.1 22873 misassembled 49245236 49267650 22505 1 NC_060933.1 JAKCWS010000430.1 99.04 True CONTIG JAKCWS010000430.1 22505 correct 33161332 33183758 22434 1 NC_060940.1 JAKCWS010000431.1 99.96 True CONTIG JAKCWS010000431.1 22434 correct 5485543 5507682 83 22323 NC_060945.1 JAKCWS010000432.1 98.68 True CONTIG JAKCWS010000432.1 22323 correct 5594055 5616184 22190 1 NC_060946.1 JAKCWS010000433.1 99.38 True CONTIG JAKCWS010000433.1 22190 correct 5491139 5513220 1 22110 NC_060945.1 JAKCWS010000434.1 98.98 True CONTIG JAKCWS010000434.1 22110 correct 9240362 9262382 1 22100 NC_060937.1 JAKCWS010000435.1 99.3 True CONTIG JAKCWS010000435.1 22100 correct 3414004 3436093 1 22100 NC_060945.1 JAKCWS010000436.1 99.43 True CONTIG JAKCWS010000436.1 22100 correct 13420899 13442904 22011 1 NC_060938.1 JAKCWS010000437.1 99.72 True CONTIG JAKCWS010000437.1 22011 correct 5558228 5580128 21981 1 NC_060945.1 JAKCWS010000438.1 99.01 True CONTIG JAKCWS010000438.1 21981 correct 4671987 4693878 1 21902 NC_060939.1 JAKCWS010000439.1 99.47 True CONTIG JAKCWS010000439.1 21902 correct 3074410 3096238 21834 1 NC_060945.1 JAKCWS010000440.1 99.57 True CONTIG JAKCWS010000440.1 21834 correct 27659730 27662823 3094 1 NC_060944.1 JAKCWS010000441.1 99.72 True local misassembly 27657341 27665167 10921 3095 NC_060944.1 JAKCWS010000441.1 99.58 True local misassembly 27659417 27660059 11562 10922 NC_060944.1 JAKCWS010000441.1 99.4 True relocation, inconsistency = -8840 27658044 27665167 21775 14652 NC_060944.1 JAKCWS010000441.1 99.58 True CONTIG JAKCWS010000441.1 21775 misassembled 49050235 49071940 21624 47 NC_060940.1 JAKCWS010000442.1 98.56 True CONTIG JAKCWS010000442.1 21657 correct 58880834 58902453 1 21620 NC_060931.1 JAKCWS010000443.1 100.0 True CONTIG JAKCWS010000443.1 21620 correct 13419602 13441193 1 21605 NC_060938.1 JAKCWS010000444.1 99.72 True CONTIG JAKCWS010000444.1 21605 correct 100867131 100888732 1 21484 NC_060938.1 JAKCWS010000445.1 98.58 True CONTIG JAKCWS010000445.1 21484 correct 30624037 30645354 1 21320 NC_060940.1 JAKCWS010000446.1 99.91 True CONTIG JAKCWS010000446.1 21320 correct 37636111 37657245 1 21126 NC_060948.1 JAKCWS010000447.1 99.9 True CONTIG JAKCWS010000447.1 21126 correct 4675642 4696693 1 21051 NC_060939.1 JAKCWS010000448.1 99.54 True CONTIG JAKCWS010000448.1 21051 correct 58268287 58279563 11277 1 NC_060948.1 JAKCWS010000449.1 100.0 True local misassembly 58265584 58267126 14045 12495 NC_060948.1 JAKCWS010000449.1 98.84 True indel: indel (> 5bp) 58262787 58265488 16881 14149 NC_060948.1 JAKCWS010000449.1 98.32 True local misassembly 58258684 58262146 20999 17538 NC_060948.1 JAKCWS010000449.1 99.97 True CONTIG JAKCWS010000449.1 20999 correct 36994713 37015669 20949 1 NC_060929.1 JAKCWS010000450.1 99.96 True CONTIG JAKCWS010000450.1 20949 correct 12399513 12420366 1 20907 NC_060925.1 JAKCWS010000451.1 99.66 True CONTIG JAKCWS010000451.1 20907 correct 2743116 2763914 20824 1 NC_060938.1 JAKCWS010000452.1 99.44 True CONTIG JAKCWS010000452.1 20824 correct 34379970 34400762 20793 1 NC_060948.1 JAKCWS010000453.1 100.0 True CONTIG JAKCWS010000453.1 20793 correct 3548631 3569374 20750 1 NC_060945.1 JAKCWS010000454.1 99.42 True CONTIG JAKCWS010000454.1 20750 correct 5090663 5111298 20616 1 NC_060946.1 JAKCWS010000455.1 99.81 True CONTIG JAKCWS010000455.1 20616 correct 4878414 4898328 1 20017 NC_060946.1 JAKCWS010000456.1 98.58 True CONTIG JAKCWS010000456.1 20609 correct 49459394 49461990 2601 1 NC_060929.1 JAKCWS010000457.1 97.89 True local misassembly 49458666 49462107 6047 2602 NC_060929.1 JAKCWS010000457.1 98.08 True local misassembly 49456085 49462738 12705 6048 NC_060929.1 JAKCWS010000457.1 97.76 True local misassembly 49459394 49461518 14832 12706 NC_060929.1 JAKCWS010000457.1 97.64 True local misassembly 49456441 49462107 20503 14833 NC_060929.1 JAKCWS010000457.1 98.04 True CONTIG JAKCWS010000457.1 20521 correct 2781340 2801810 5 20481 NC_060938.1 JAKCWS010000458.1 98.97 True CONTIG JAKCWS010000458.1 20481 correct 5499000 5500023 1 1026 NC_060945.1 JAKCWS010000459.1 99.24 True translocation 9325990 9345333 1027 20277 NC_060937.1 JAKCWS010000459.1 98.7 True CONTIG JAKCWS010000459.1 20277 misassembled 38889823 38910000 20093 1 NC_060943.1 JAKCWS010000460.1 99.0 True CONTIG JAKCWS010000460.1 20093 correct 14819790 14822063 369 2642 NC_060937.1 JAKCWS010000461.1 98.77 True relocation, inconsistency = -849561 13972503 13975546 2643 5634 NC_060937.1 JAKCWS010000461.1 97.48 True local misassembly 13972525 13980303 5635 13404 NC_060937.1 JAKCWS010000461.1 98.01 True relocation, inconsistency = 1472838 15453232 15459805 13495 20066 NC_060937.1 JAKCWS010000461.1 97.82 True CONTIG JAKCWS010000461.1 20066 misassembled 2253632 2273654 1 20014 NC_060938.1 JAKCWS010000462.1 99.61 True CONTIG JAKCWS010000462.1 20014 correct 5594622 5614284 1 19715 NC_060946.1 JAKCWS010000463.1 99.42 True CONTIG JAKCWS010000463.1 19715 correct 40652952 40672483 1 19542 NC_060927.1 JAKCWS010000464.1 99.93 True CONTIG JAKCWS010000464.1 19542 correct 5497346 5500023 1 2685 NC_060945.1 JAKCWS010000465.1 99.23 True translocation 9325990 9342789 2686 19405 NC_060937.1 JAKCWS010000465.1 98.51 True CONTIG JAKCWS010000465.1 19405 misassembled 30046970 30066316 1 19350 NC_060948.1 JAKCWS010000466.1 99.98 True CONTIG JAKCWS010000466.1 19350 correct 71203653 71222836 1 19191 NC_060929.1 JAKCWS010000467.1 99.95 True CONTIG JAKCWS010000467.1 19191 correct 58884010 58903024 19015 1 NC_060931.1 JAKCWS010000468.1 100.0 True CONTIG JAKCWS010000468.1 19015 correct 26572971 26591921 18947 1 NC_060930.1 JAKCWS010000469.1 99.77 True CONTIG JAKCWS010000469.1 18947 correct 5562894 5573686 1 10818 NC_060945.1 JAKCWS010000470.1 99.4 True indel: indel (> 5bp) 5573893 5575203 10963 12250 NC_060945.1 JAKCWS010000470.1 95.3 True relocation, inconsistency = -265917 5309419 5315930 12383 18943 NC_060945.1 JAKCWS010000470.1 97.77 True CONTIG JAKCWS010000470.1 18943 misassembled 5006801 5025466 18777 1 NC_060946.1 JAKCWS010000471.1 98.55 True CONTIG JAKCWS010000471.1 18777 correct 71086790 71105195 1 18475 NC_060933.1 JAKCWS010000472.1 97.83 True CONTIG JAKCWS010000472.1 18475 correct 25973321 25974476 1174 19 NC_060943.1 JAKCWS010000473.1 96.02 True local misassembly 25974597 25975214 3298 2681 NC_060943.1 JAKCWS010000473.1 96.09 True relocation, inconsistency = -2325895 28293805 28300491 9985 3299 NC_060943.1 JAKCWS010000473.1 97.41 True local misassembly 28293859 28300264 16390 9986 NC_060943.1 JAKCWS010000473.1 97.45 True relocation, inconsistency = 1025818 27266498 27268040 17933 16391 NC_060943.1 JAKCWS010000473.1 96.98 True CONTIG JAKCWS010000473.1 18358 misassembled 29732311 29750569 1 18266 NC_060940.1 JAKCWS010000474.1 99.9 True CONTIG JAKCWS010000474.1 18266 correct 33186179 33204291 18119 1 NC_060940.1 JAKCWS010000475.1 99.94 True CONTIG JAKCWS010000475.1 18119 correct 2566627 2567450 853 40 NC_060939.1 JAKCWS010000476.1 99.2 True translocation 9198483 9215581 17997 854 NC_060937.1 JAKCWS010000476.1 99.37 True CONTIG JAKCWS010000476.1 17997 misassembled 49456085 49462575 6505 11 NC_060929.1 JAKCWS010000477.1 97.71 True local misassembly 49456085 49458802 9222 6506 NC_060929.1 JAKCWS010000477.1 98.03 True local misassembly 49458666 49460750 11736 9651 NC_060929.1 JAKCWS010000477.1 98.14 True local misassembly 49456618 49462738 17861 11737 NC_060929.1 JAKCWS010000477.1 97.86 True CONTIG JAKCWS010000477.1 17866 correct 8836823 8854676 1 17734 NC_060937.1 JAKCWS010000478.1 97.37 True CONTIG JAKCWS010000478.1 17758 correct 4070137 4087846 17735 1 NC_060945.1 JAKCWS010000479.1 99.08 True CONTIG JAKCWS010000479.1 17735 correct 3370686 3388371 1 17690 NC_060945.1 JAKCWS010000480.1 99.42 True CONTIG JAKCWS010000480.1 17690 correct 4678831 4696491 1 17641 NC_060939.1 JAKCWS010000481.1 99.64 True CONTIG JAKCWS010000481.1 17641 correct 4671905 4689378 1 17530 NC_060939.1 JAKCWS010000482.1 99.28 True CONTIG JAKCWS010000482.1 17530 correct 4677750 4695111 1 17346 NC_060939.1 JAKCWS010000483.1 99.56 True CONTIG JAKCWS010000483.1 17346 correct 7873308 8017267 144150 1 NC_060945.1 JAKCWS010000493.1 99.37 True translocation 10748724 10847534 243649 144151 NC_060937.1 JAKCWS010000493.1 99.25 True local misassembly 10700982 10745836 289519 243912 NC_060937.1 JAKCWS010000493.1 97.69 True translocation 49611492 49612106 292342 291728 NC_060928.1 JAKCWS010000493.1 98.86 True relocation, inconsistency = -16307 49609811 49610316 310330 309825 NC_060928.1 JAKCWS010000493.1 99.41 True indel: indel (<= 5bp) 49609239 49609810 310907 310336 NC_060928.1 JAKCWS010000493.1 98.95 True local misassembly 49607734 49608299 312432 311867 NC_060928.1 JAKCWS010000493.1 98.76 True indel: indel (> 5bp) 49607166 49607733 313030 312463 NC_060928.1 JAKCWS010000493.1 98.77 True indel: indel (> 5bp) 49606661 49607165 313549 313045 NC_060928.1 JAKCWS010000493.1 99.05 True translocation 7817823 7819469 315196 313550 NC_060946.1 JAKCWS010000493.1 98.0 True indel: indel (> 5bp) 7817024 7817556 315965 315433 NC_060946.1 JAKCWS010000493.1 98.69 True translocation 10463565 10701012 554170 316917 NC_060937.1 JAKCWS010000493.1 99.29 True indel: indel (<= 5bp) 10403947 10463412 614010 554326 NC_060937.1 JAKCWS010000493.1 99.14 True local misassembly 10397348 10398269 619116 618195 NC_060937.1 JAKCWS010000493.1 99.67 True indel: indel (> 5bp) 10396328 10396860 620076 619544 NC_060937.1 JAKCWS010000493.1 99.81 True local misassembly 10390627 10391192 621619 621054 NC_060937.1 JAKCWS010000493.1 99.82 True indel: indel (> 5bp) 10389733 10390280 622553 622006 NC_060937.1 JAKCWS010000493.1 99.09 True local misassembly 10386941 10387494 625345 624792 NC_060937.1 JAKCWS010000493.1 99.46 True local misassembly 10385059 10385567 627186 626678 NC_060937.1 JAKCWS010000493.1 99.41 True local misassembly 10383671 10384359 628559 627871 NC_060937.1 JAKCWS010000493.1 99.42 True indel: stretch of mismatches 10382680 10383204 629550 629026 NC_060937.1 JAKCWS010000493.1 99.05 True indel: indel (> 5bp) 10381978 10382679 630267 629566 NC_060937.1 JAKCWS010000493.1 99.15 True local misassembly 10380082 10380896 632683 631869 NC_060937.1 JAKCWS010000493.1 99.26 True indel: indel (<= 5bp) 10379064 10379636 633706 633134 NC_060937.1 JAKCWS010000493.1 100.0 True local misassembly 10376279 10376877 636681 636083 NC_060937.1 JAKCWS010000493.1 99.83 True local misassembly 10374332 10374874 638563 638021 NC_060937.1 JAKCWS010000493.1 99.82 True local misassembly 10357874 10373668 656565 640941 NC_060937.1 JAKCWS010000493.1 96.11 True local misassembly 10340360 10356732 675397 658690 NC_060937.1 JAKCWS010000493.1 95.57 True local misassembly 10335775 10339557 679527 675675 NC_060937.1 JAKCWS010000493.1 95.03 True translocation 7350096 7350765 689451 690120 NC_060945.1 JAKCWS010000493.1 98.21 True local misassembly 7349928 7351140 693544 694741 NC_060945.1 JAKCWS010000493.1 96.04 True local misassembly 7349928 7351140 697830 699032 NC_060945.1 JAKCWS010000493.1 96.46 True relocation, inconsistency = -15152 7349928 7351140 712972 714169 NC_060945.1 JAKCWS010000493.1 96.04 True local misassembly 7349928 7351140 717268 718485 NC_060945.1 JAKCWS010000493.1 95.2 True local misassembly 7349928 7351140 721564 722761 NC_060945.1 JAKCWS010000493.1 95.96 True translocation 3277290 3278174 753518 752634 NC_060938.1 JAKCWS010000493.1 98.53 True indel: indel (<= 5bp) 3275507 3276912 755296 753891 NC_060938.1 JAKCWS010000493.1 97.23 True local misassembly 3274601 3275272 756288 755617 NC_060938.1 JAKCWS010000493.1 98.07 True local misassembly 3256439 3274699 779022 760827 NC_060938.1 JAKCWS010000493.1 98.07 True inversion 3250395 3254163 779197 782963 NC_060938.1 JAKCWS010000493.1 98.51 True relocation, inconsistency = -79251 3175009 3191586 783060 799697 NC_060938.1 JAKCWS010000493.1 97.45 True translocation 9737078 9737931 799698 800551 NC_060937.1 JAKCWS010000493.1 97.25 True local misassembly 9737824 9748683 801263 812189 NC_060937.1 JAKCWS010000493.1 97.83 True translocation 5104456 5126057 834254 812675 NC_060939.1 JAKCWS010000493.1 97.9 True translocation 3076624 3152613 909742 834255 NC_060938.1 JAKCWS010000493.1 96.41 True translocation 5773553 5948315 1083908 909743 NC_060946.1 JAKCWS010000493.1 98.37 True translocation 5574848 5665154 1174243 1083909 NC_060945.1 JAKCWS010000493.1 99.47 True translocation 2915988 2949054 1207278 1174244 NC_060939.1 JAKCWS010000493.1 99.12 True relocation, inconsistency = -1760210 4669854 4676197 1213619 1207279 NC_060939.1 JAKCWS010000493.1 97.84 True relocation, inconsistency = 44176 4579574 4625677 1259705 1213620 NC_060939.1 JAKCWS010000493.1 98.48 True local misassembly 4535577 4580305 1304204 1259706 NC_060939.1 JAKCWS010000493.1 98.67 True translocation, scaffold gap is present 2427678 2557464 1799360 1669948 NC_060938.1 JAKCWS010000493.1 98.62 True local misassembly 2424649 2426231 1802359 1800791 NC_060938.1 JAKCWS010000493.1 99.12 True CONTIG JAKCWS010000493.1 1802359 misassembled 3101966 3119328 17339 1 NC_060939.1 JAKCWS010000484.1 99.41 True CONTIG JAKCWS010000484.1 17339 correct 9244980 9262152 1 17183 NC_060937.1 JAKCWS010000485.1 99.47 True CONTIG JAKCWS010000485.1 17183 correct 4670754 4687860 17167 1 NC_060939.1 JAKCWS010000486.1 99.16 True CONTIG JAKCWS010000486.1 17167 correct 9181617 9198671 1 17095 NC_060937.1 JAKCWS010000487.1 98.95 True CONTIG JAKCWS010000487.1 17095 correct 54379916 54381073 1 1158 NC_060935.1 JAKCWS010000488.1 98.36 True relocation, inconsistency = -400113 53980961 53996738 1159 16939 NC_060935.1 JAKCWS010000488.1 98.0 True CONTIG JAKCWS010000488.1 16939 misassembled 5046636 5063548 1 16896 NC_060946.1 JAKCWS010000489.1 99.86 True CONTIG JAKCWS010000489.1 16896 correct 2526471 2543390 16855 1 NC_060938.1 JAKCWS010000490.1 99.44 True CONTIG JAKCWS010000490.1 16855 correct 9288950 9305306 16344 1 NC_060937.1 JAKCWS010000491.1 99.46 True CONTIG JAKCWS010000491.1 16344 correct 45821314 45821866 1 553 NC_060933.1 JAKCWS010000492.1 99.4 True local misassembly 45825099 45840615 554 16069 NC_060933.1 JAKCWS010000492.1 99.81 True CONTIG JAKCWS010000492.1 16069 correct 5539277 5555412 15992 1 NC_060945.1 JAKCWS010000494.1 97.86 True CONTIG JAKCWS010000494.1 15992 correct 5351352 5367331 1 15962 NC_060946.1 JAKCWS010000495.1 99.85 True CONTIG JAKCWS010000495.1 15962 correct 5049879 5065671 15834 1 NC_060945.1 JAKCWS010000496.1 99.12 True CONTIG JAKCWS010000496.1 15834 correct 5210487 5225821 1 15343 NC_060946.1 JAKCWS010000497.1 99.84 True CONTIG JAKCWS010000497.1 15343 correct 71089944 71105092 1 15265 NC_060933.1 JAKCWS010000498.1 97.94 True CONTIG JAKCWS010000498.1 15272 correct 2215676 2230861 1 15172 NC_060938.1 JAKCWS010000499.1 99.76 True CONTIG JAKCWS010000499.1 15172 correct 92871329 92886678 1 15010 NC_060927.1 JAKCWS010000500.1 97.47 True CONTIG JAKCWS010000500.1 15010 correct 7905980 7920318 14632 1 NC_060945.1 JAKCWS010000501.1 97.91 True CONTIG JAKCWS010000501.1 14632 correct 182034890 182043960 14375 5305 NC_060929.1 JAKCWS010000502.1 99.98 True CONTIG JAKCWS010000502.1 14375 correct 16804805 16818585 55 13326 NC_060939.1 JAKCWS010000503.1 96.08 True CONTIG JAKCWS010000503.1 13326 correct 5353200 5366209 12990 1 NC_060946.1 JAKCWS010000504.1 99.75 True CONTIG JAKCWS010000504.1 12998 correct 11036671 11039662 4 2994 NC_060938.1 JAKCWS010000505.1 98.81 True local misassembly 11035571 11041691 2995 9114 NC_060938.1 JAKCWS010000505.1 98.71 True local misassembly 11036236 11040010 9115 12888 NC_060938.1 JAKCWS010000505.1 98.6 True CONTIG JAKCWS010000505.1 12888 correct 53577895 53590592 12698 1 NC_060938.1 JAKCWS010000506.1 99.99 True CONTIG JAKCWS010000506.1 12698 correct 96127031 96139543 12513 1 NC_060926.1 JAKCWS010000507.1 100.0 True CONTIG JAKCWS010000507.1 12513 correct 10514573 10521305 52 6785 NC_060938.1 JAKCWS010000508.1 98.95 True indel: stretch of mismatches 10521306 10525724 6786 11204 NC_060938.1 JAKCWS010000508.1 99.0 True CONTIG JAKCWS010000508.1 11204 correct 86 2719 7827 10535 NC_060945.1 JAKCWS010000509.1 96.42 True local misassembly 2770 60929 11001 69188 NC_060945.1 JAKCWS010000509.1 99.76 True translocation 67387 85032 69204 86865 NC_060939.1 JAKCWS010000509.1 99.36 True translocation 76144 78093 87771 89720 NC_060945.1 JAKCWS010000509.1 99.64 True indel: indel (> 5bp) 78110 80573 89721 92184 NC_060945.1 JAKCWS010000509.1 99.63 True local misassembly 81174 82401 92756 93983 NC_060945.1 JAKCWS010000509.1 98.13 True local misassembly 82402 84422 94131 96151 NC_060945.1 JAKCWS010000509.1 98.86 True indel: indel (> 5bp) 84439 86902 96152 98615 NC_060945.1 JAKCWS010000509.1 99.63 True local misassembly 87503 88730 99187 100414 NC_060945.1 JAKCWS010000509.1 98.13 True local misassembly 88731 90751 100562 102582 NC_060945.1 JAKCWS010000509.1 99.01 True indel: indel (> 5bp) 90772 93235 102583 105046 NC_060945.1 JAKCWS010000509.1 99.63 True local misassembly 93836 95063 105618 106845 NC_060945.1 JAKCWS010000509.1 98.05 True local misassembly 95064 96649 106993 108578 NC_060945.1 JAKCWS010000509.1 98.74 True indel: indel (> 5bp) 97086 99583 108988 111485 NC_060945.1 JAKCWS010000509.1 99.16 True local misassembly 100180 101720 112049 113589 NC_060945.1 JAKCWS010000509.1 99.48 True local misassembly 101721 104551 114166 116996 NC_060945.1 JAKCWS010000509.1 99.58 True indel: indel (> 5bp) 104560 107146 116997 119583 NC_060945.1 JAKCWS010000509.1 99.81 True indel: indel (<= 5bp) 107151 108582 119584 121015 NC_060945.1 JAKCWS010000509.1 99.58 True local misassembly 108871 109583 121016 121728 NC_060945.1 JAKCWS010000509.1 98.88 True local misassembly 109584 111737 121873 124026 NC_060945.1 JAKCWS010000509.1 99.72 True indel: indel (> 5bp) 111996 116046 124276 128326 NC_060945.1 JAKCWS010000509.1 99.65 True local misassembly 116304 117019 129451 130166 NC_060945.1 JAKCWS010000509.1 98.74 True local misassembly 117020 119173 130311 132464 NC_060945.1 JAKCWS010000509.1 99.63 True indel: indel (<= 5bp) 119175 121997 132465 135287 NC_060945.1 JAKCWS010000509.1 99.19 True translocation 134377 136250 135290 137163 NC_060939.1 JAKCWS010000509.1 98.88 True local misassembly 136394 139093 137164 139863 NC_060939.1 JAKCWS010000509.1 99.85 True indel: indel (> 5bp) 139102 141672 139864 142434 NC_060939.1 JAKCWS010000509.1 99.53 True indel: indel (<= 5bp) 141677 143116 142435 143874 NC_060939.1 JAKCWS010000509.1 99.38 True local misassembly 143405 146521 143875 146991 NC_060939.1 JAKCWS010000509.1 99.36 True indel: indel (<= 5bp) 146522 151291 146996 151765 NC_060939.1 JAKCWS010000509.1 99.58 True relocation, inconsistency = -29695 121711 143116 151880 172438 NC_060939.1 JAKCWS010000509.1 95.31 True local misassembly 143405 222187 172439 251973 NC_060939.1 JAKCWS010000509.1 98.44 True local misassembly 219948 220616 251974 252642 NC_060939.1 JAKCWS010000509.1 97.84 True translocation 294316 308267 252643 266263 NC_060946.1 JAKCWS010000509.1 95.03 True translocation 219528 378377 266264 425301 NC_060939.1 JAKCWS010000509.1 99.69 True local misassembly 382052 409643 425302 452893 NC_060939.1 JAKCWS010000509.1 99.1 True local misassembly 414144 424642 452903 463402 NC_060939.1 JAKCWS010000509.1 99.49 True relocation, inconsistency = -25445 399198 417004 463403 481210 NC_060939.1 JAKCWS010000509.1 98.29 True relocation, inconsistency = 17695 434700 441006 481211 487517 NC_060939.1 JAKCWS010000509.1 99.06 True local misassembly 434065 436377 487518 489830 NC_060939.1 JAKCWS010000509.1 99.77 True indel: indel (> 5bp) 436439 438519 489831 491911 NC_060939.1 JAKCWS010000509.1 99.38 True indel: indel (<= 5bp) 438521 441614 491912 495005 NC_060939.1 JAKCWS010000509.1 98.48 True relocation, inconsistency = 349685 791529 804078 495235 507853 NC_060939.1 JAKCWS010000509.1 96.29 True local misassembly 807892 811147 507854 511107 NC_060939.1 JAKCWS010000509.1 97.0 True translocation 1128903 1137242 511108 519308 NC_060946.1 JAKCWS010000509.1 95.49 True translocation 555275 564992 519716 529433 NC_060939.1 JAKCWS010000509.1 99.4 True indel: indel (<= 5bp) 564993 566774 529435 531216 NC_060939.1 JAKCWS010000509.1 97.98 True indel: indel (> 5bp) 566967 568352 531342 532727 NC_060939.1 JAKCWS010000509.1 97.72 True translocation 866413 872620 532728 539004 NC_060946.1 JAKCWS010000509.1 97.66 True local misassembly 869833 872620 539212 541999 NC_060946.1 JAKCWS010000509.1 98.71 True relocation, inconsistency = 170259 1043337 1054807 542457 554062 NC_060946.1 JAKCWS010000509.1 97.42 True translocation 574717 576913 554063 556259 NC_060939.1 JAKCWS010000509.1 99.77 True relocation, inconsistency = 320634 897548 909280 556260 568064 NC_060939.1 JAKCWS010000509.1 97.93 True translocation 769380 771084 568065 569769 NC_060946.1 JAKCWS010000509.1 96.75 True translocation 899554 909280 569770 579633 NC_060939.1 JAKCWS010000509.1 97.15 True relocation, inconsistency = -223025 686256 691648 579634 585094 NC_060939.1 JAKCWS010000509.1 96.08 True translocation 2087641 2089613 585724 587697 NC_060946.1 JAKCWS010000509.1 97.14 True translocation 746583 767946 587698 609060 NC_060939.1 JAKCWS010000509.1 99.24 True relocation, inconsistency = -326406 441541 444653 609061 612174 NC_060939.1 JAKCWS010000509.1 98.04 True relocation, inconsistency = 345604 790356 798328 612273 620246 NC_060939.1 JAKCWS010000509.1 99.47 True local misassembly 793901 800120 620513 626733 NC_060939.1 JAKCWS010000509.1 99.29 True translocation 1061266 1063641 626734 629110 NC_060946.1 JAKCWS010000509.1 98.1 True relocation, inconsistency = 1012133 2075775 2077955 629111 631224 NC_060946.1 JAKCWS010000509.1 97.55 True local misassembly 2074010 2109950 631225 667181 NC_060946.1 JAKCWS010000509.1 97.9 True relocation, inconsistency = -1350479 759472 763654 667182 671227 NC_060946.1 JAKCWS010000509.1 96.65 True translocation 870784 872653 671325 673195 NC_060939.1 JAKCWS010000509.1 97.76 True local misassembly 876449 877842 673315 674708 NC_060939.1 JAKCWS010000509.1 97.45 True local misassembly 874168 892287 674709 692830 NC_060939.1 JAKCWS010000509.1 98.81 True fake: not a misassembly (possible transposable element) 824319 825630 692831 694141 NC_060946.1 JAKCWS010000509.1 96.04 True fake: not a misassembly (possible transposable element) 893115 895658 694202 696676 NC_060939.1 JAKCWS010000509.1 96.51 True local misassembly 891847 907447 696677 712280 NC_060939.1 JAKCWS010000509.1 98.44 True local misassembly 909354 919088 712281 722013 NC_060939.1 JAKCWS010000509.1 98.72 True local misassembly 917607 1126725 722032 931318 NC_060939.1 JAKCWS010000509.1 99.75 True local misassembly 1133171 1166310 931319 964423 NC_060939.1 JAKCWS010000509.1 98.99 True local misassembly 1169793 1182356 968656 981065 NC_060939.1 JAKCWS010000509.1 96.96 True local misassembly 1187762 1190072 985061 987362 NC_060939.1 JAKCWS010000509.1 95.71 True local misassembly 1193828 1210047 987459 1003654 NC_060939.1 JAKCWS010000509.1 96.52 True relocation, inconsistency = -12395 1197653 1239101 1003655 1044618 NC_060939.1 JAKCWS010000509.1 98.14 True local misassembly 1240137 1243229 1045671 1048763 NC_060939.1 JAKCWS010000509.1 99.74 True local misassembly 1244144 1245594 1049804 1051254 NC_060939.1 JAKCWS010000509.1 99.31 True local misassembly 1245595 1258119 1052009 1064533 NC_060939.1 JAKCWS010000509.1 99.67 True local misassembly 1259244 1260850 1064534 1066140 NC_060939.1 JAKCWS010000509.1 97.79 True relocation, inconsistency = 97137 1358361 1360213 1066514 1068366 NC_060939.1 JAKCWS010000509.1 98.33 True local misassembly 1360591 1361797 1068367 1069573 NC_060939.1 JAKCWS010000509.1 98.34 True relocation, inconsistency = -103056 1258742 1260472 1069574 1071304 NC_060939.1 JAKCWS010000509.1 99.6 True indel: indel (<= 5bp) 1260478 1261956 1071305 1072783 NC_060939.1 JAKCWS010000509.1 96.82 True local misassembly 1262334 1263289 1072784 1073739 NC_060939.1 JAKCWS010000509.1 97.9 True translocation 95162168 95169255 1073740 1080737 NC_060927.1 JAKCWS010000509.1 95.9 True local misassembly 95165500 95169395 1080738 1084543 NC_060927.1 JAKCWS010000509.1 96.12 True translocation 1263385 1266185 1084544 1087344 NC_060939.1 JAKCWS010000509.1 97.31 True translocation 2750000 2750860 1087565 1088425 NC_060937.1 JAKCWS010000509.1 98.84 True local misassembly 2751424 2752110 1088997 1089683 NC_060937.1 JAKCWS010000509.1 98.84 True local misassembly 2752660 2753769 1090191 1091300 NC_060937.1 JAKCWS010000509.1 97.39 True indel: indel (> 5bp) 2753913 2754539 1091359 1091985 NC_060937.1 JAKCWS010000509.1 96.97 True indel: indel (> 5bp) 2754720 2755643 1092172 1093095 NC_060937.1 JAKCWS010000509.1 97.62 True local misassembly 2756922 2757909 1094201 1095188 NC_060937.1 JAKCWS010000509.1 97.98 True translocation 1262401 1266185 1096073 1099857 NC_060939.1 JAKCWS010000509.1 97.31 True translocation 2750000 2750860 1100078 1100938 NC_060937.1 JAKCWS010000509.1 98.84 True local misassembly 2751424 2752110 1101510 1102196 NC_060937.1 JAKCWS010000509.1 98.84 True local misassembly 2752660 2753769 1102704 1103813 NC_060937.1 JAKCWS010000509.1 97.39 True indel: indel (> 5bp) 2753913 2754539 1103872 1104498 NC_060937.1 JAKCWS010000509.1 96.97 True indel: indel (> 5bp) 2754720 2755643 1104685 1105608 NC_060937.1 JAKCWS010000509.1 97.62 True indel: indel (> 5bp) 2755787 2756413 1105667 1106293 NC_060937.1 JAKCWS010000509.1 97.13 True relocation, inconsistency = -1236441 1519977 1521082 1106298 1107403 NC_060937.1 JAKCWS010000509.1 97.92 True local misassembly 1521479 1522602 1107711 1108834 NC_060937.1 JAKCWS010000509.1 96.09 True indel: indel (<= 5bp) 1523096 1525227 1109329 1111460 NC_060937.1 JAKCWS010000509.1 98.59 True indel: stretch of mismatches 1525606 1527231 1111839 1113464 NC_060937.1 JAKCWS010000509.1 96.57 True translocation 1258807 1267852 1113465 1122520 NC_060939.1 JAKCWS010000509.1 98.85 True relocation, inconsistency = 10880 1278733 1298886 1122521 1142667 NC_060939.1 JAKCWS010000509.1 98.82 True relocation, inconsistency = 38671 1337558 1343839 1142668 1148949 NC_060939.1 JAKCWS010000509.1 99.16 True local misassembly 1346546 1360554 1148950 1162586 NC_060939.1 JAKCWS010000509.1 97.19 True relocation, inconsistency = -62585 1298125 1299500 1162742 1164117 NC_060939.1 JAKCWS010000509.1 99.4 True relocation, inconsistency = 52587 1352088 1355706 1164118 1167736 NC_060939.1 JAKCWS010000509.1 99.94 True local misassembly 1356079 1361083 1167737 1172741 NC_060939.1 JAKCWS010000509.1 99.9 True local misassembly 1361462 1365214 1172742 1176494 NC_060939.1 JAKCWS010000509.1 99.6 True translocation 4623362 4624392 1176495 1177525 NC_060937.1 JAKCWS010000509.1 98.91 True local misassembly 4624393 4625079 1177899 1178585 NC_060937.1 JAKCWS010000509.1 96.51 True indel: indel (<= 5bp) 4625080 4627384 1178589 1180893 NC_060937.1 JAKCWS010000509.1 99.52 True indel: indel (<= 5bp) 4627390 4628298 1180894 1181802 NC_060937.1 JAKCWS010000509.1 97.95 True relocation, inconsistency = 8248 4636547 4641203 1181803 1186451 NC_060937.1 JAKCWS010000509.1 97.66 True translocation 1275868 1279303 1186613 1190047 NC_060939.1 JAKCWS010000509.1 99.07 True fake: not a misassembly (possible transposable element) 1603831 1604881 1190048 1191098 NC_060945.1 JAKCWS010000509.1 97.31 True fake: not a misassembly (possible transposable element) 1278485 1282082 1191099 1194696 NC_060939.1 JAKCWS010000509.1 96.23 True local misassembly 1276412 1278450 1195202 1197236 NC_060939.1 JAKCWS010000509.1 97.5 True translocation 468138 475293 1198029 1205187 NC_060937.1 JAKCWS010000509.1 96.08 True translocation 1807623 1811108 1205188 1208675 NC_060945.1 JAKCWS010000509.1 96.43 True translocation 1281537 1282140 1208955 1209558 NC_060939.1 JAKCWS010000509.1 97.35 True relocation, inconsistency = 85045 1367877 1371548 1210250 1213920 NC_060939.1 JAKCWS010000509.1 95.67 True local misassembly 1367799 1376790 1213921 1222912 NC_060939.1 JAKCWS010000509.1 99.73 True local misassembly 1378770 1381177 1223389 1225796 NC_060939.1 JAKCWS010000509.1 99.6 True local misassembly 1387178 1390255 1225797 1228869 NC_060939.1 JAKCWS010000509.1 99.17 True translocation 3371823 3383459 1228870 1240893 NC_060946.1 JAKCWS010000509.1 95.02 True local misassembly 3389845 3392100 1240894 1243143 NC_060946.1 JAKCWS010000509.1 97.46 True relocation, inconsistency = 13931 3406032 3411864 1243144 1248981 NC_060946.1 JAKCWS010000509.1 98.51 True local misassembly 3406981 3409509 1248982 1251510 NC_060946.1 JAKCWS010000509.1 98.4 True translocation 94947861 94949220 1251732 1253091 NC_060927.1 JAKCWS010000509.1 97.87 True translocation 4705448 4706997 1257112 1255563 NC_060937.1 JAKCWS010000509.1 98.71 True translocation 1340564 1344353 1258366 1262160 NC_060939.1 JAKCWS010000509.1 98.87 True local misassembly 1340106 1341864 1262161 1263919 NC_060939.1 JAKCWS010000509.1 98.94 True local misassembly 1342354 1345114 1264787 1267547 NC_060939.1 JAKCWS010000509.1 99.82 True CONTIG JAKCWS010000509.1 1267547 misassembled 1352716 1367241 17 14176 NC_060939.1 JAKCWS010000510.1 96.72 True translocation 1378659 1384286 14177 19810 NC_060945.1 JAKCWS010000510.1 98.1 True relocation, inconsistency = -7871 1376670 1378024 20065 21419 NC_060945.1 JAKCWS010000510.1 99.11 True indel: indel (> 5bp) 1378171 1378915 21560 22304 NC_060945.1 JAKCWS010000510.1 96.11 True indel: indel (> 5bp) 1379148 1380648 22543 24043 NC_060945.1 JAKCWS010000510.1 97.4 True local misassembly 1381027 1382141 24044 25158 NC_060945.1 JAKCWS010000510.1 98.92 True indel: indel (> 5bp) 1382291 1383643 25302 26654 NC_060945.1 JAKCWS010000510.1 96.6 True translocation 1270515 1272492 26655 28632 NC_060939.1 JAKCWS010000510.1 97.33 True local misassembly 1267245 1282838 28633 43761 NC_060939.1 JAKCWS010000510.1 95.09 True fake: not a misassembly (possible transposable element) 1369605 1371049 44202 45646 NC_060939.1 JAKCWS010000510.1 97.37 True fake: not a misassembly (possible transposable element) 1278514 1281709 46193 49392 NC_060939.1 JAKCWS010000510.1 98.88 True local misassembly 1279856 1282140 50323 52608 NC_060939.1 JAKCWS010000510.1 98.51 True relocation, inconsistency = 86547 1369379 1370424 53300 54345 NC_060939.1 JAKCWS010000510.1 95.98 True indel: indel (<= 5bp) 1370426 1371072 54346 54992 NC_060939.1 JAKCWS010000510.1 97.06 True translocation 2651196 2653416 55170 57389 NC_060946.1 JAKCWS010000510.1 96.27 True translocation 1279856 1282140 57390 59675 NC_060939.1 JAKCWS010000510.1 98.51 True local misassembly 1280158 1281138 60103 61082 NC_060939.1 JAKCWS010000510.1 97.05 True local misassembly 1278514 1282082 61083 64650 NC_060939.1 JAKCWS010000510.1 96.31 True local misassembly 1280158 1281775 64763 66380 NC_060939.1 JAKCWS010000510.1 97.34 True translocation 3601120 3603329 66509 68727 NC_060937.1 JAKCWS010000510.1 95.56 True translocation 1382704 1386910 68728 72934 NC_060939.1 JAKCWS010000510.1 99.88 True local misassembly 1386911 1389092 73312 75493 NC_060939.1 JAKCWS010000510.1 99.86 True local misassembly 1389093 1393058 75867 79832 NC_060939.1 JAKCWS010000510.1 99.62 True translocation 3374248 3375878 79833 81463 NC_060946.1 JAKCWS010000510.1 99.01 True indel: indel (<= 5bp) 3375880 3378136 81464 83720 NC_060946.1 JAKCWS010000510.1 98.4 True indel: indel (<= 5bp) 3378138 3378817 83721 84400 NC_060946.1 JAKCWS010000510.1 98.53 True indel: indel (<= 5bp) 3378818 3382344 84406 87932 NC_060946.1 JAKCWS010000510.1 98.16 True translocation 770084 772887 87933 90736 NC_060937.1 JAKCWS010000510.1 95.84 True translocation 3405122 3408896 91518 95286 NC_060946.1 JAKCWS010000510.1 97.3 True translocation 94947861 94949220 95370 96729 NC_060927.1 JAKCWS010000510.1 98.01 True local misassembly 94947552 94949220 98546 100213 NC_060927.1 JAKCWS010000510.1 97.24 True translocation 3415262 3415835 100951 100378 NC_060937.1 JAKCWS010000510.1 97.21 True relocation, inconsistency = -10666 3416163 3417810 110716 109069 NC_060937.1 JAKCWS010000510.1 98.48 True relocation, inconsistency = 1356203 4778491 4779455 115194 116161 NC_060937.1 JAKCWS010000510.1 96.69 True local misassembly 4778491 4779455 121988 122955 NC_060937.1 JAKCWS010000510.1 96.69 True local misassembly 4784421 4785510 131819 132908 NC_060937.1 JAKCWS010000510.1 97.8 True translocation 3435581 3437697 133377 135485 NC_060946.1 JAKCWS010000510.1 97.73 True translocation 95328698 95329774 135763 136839 NC_060927.1 JAKCWS010000510.1 96.94 True translocation 1151326 1152243 139606 140523 NC_060937.1 JAKCWS010000510.1 95.53 True indel: indel (> 5bp) 1152286 1153241 140524 141479 NC_060937.1 JAKCWS010000510.1 96.65 True translocation 3422454 3424698 141557 143800 NC_060946.1 JAKCWS010000510.1 96.79 True local misassembly 3421186 3422386 144363 145563 NC_060946.1 JAKCWS010000510.1 97.42 True translocation 133108 134835 145732 147464 NC_060937.1 JAKCWS010000510.1 97.52 True relocation, inconsistency = 3229590 3364569 3367933 147608 150981 NC_060937.1 JAKCWS010000510.1 95.62 True translocation 3423274 3424181 151115 152021 NC_060946.1 JAKCWS010000510.1 97.91 True translocation 1163919 1165972 153356 155409 NC_060937.1 JAKCWS010000510.1 95.96 True relocation, inconsistency = 2757256 3923681 3924823 155862 157004 NC_060937.1 JAKCWS010000510.1 96.15 True translocation 1536247 1537546 159552 160851 NC_060945.1 JAKCWS010000510.1 97.23 True local misassembly 1537547 1538717 160978 162148 NC_060945.1 JAKCWS010000510.1 98.04 True indel: indel (<= 5bp) 1538718 1539764 162152 163198 NC_060945.1 JAKCWS010000510.1 97.9 True indel: indel (<= 5bp) 1539765 1540525 163202 163962 NC_060945.1 JAKCWS010000510.1 98.55 True local misassembly 1536247 1536969 165432 166154 NC_060945.1 JAKCWS010000510.1 97.1 True indel: indel (<= 5bp) 1536971 1537546 166155 166730 NC_060945.1 JAKCWS010000510.1 97.74 True local misassembly 1537547 1538717 166857 168027 NC_060945.1 JAKCWS010000510.1 97.87 True indel: indel (<= 5bp) 1538718 1539764 168031 169077 NC_060945.1 JAKCWS010000510.1 97.99 True indel: indel (<= 5bp) 1539765 1540525 169081 169841 NC_060945.1 JAKCWS010000510.1 98.55 True local misassembly 1544186 1545150 171419 172386 NC_060945.1 JAKCWS010000510.1 97.31 True translocation 112644 113220 172833 173409 NC_060937.1 JAKCWS010000510.1 97.76 True translocation 1362083 1370671 173410 182015 NC_060939.1 JAKCWS010000510.1 95.8 True local misassembly 1366922 1370667 182016 185756 NC_060939.1 JAKCWS010000510.1 95.94 True translocation 1610607 1612071 185757 187221 NC_060945.1 JAKCWS010000510.1 97.02 True indel: indel (> 5bp) 1612125 1612990 187322 188187 NC_060945.1 JAKCWS010000510.1 97.69 True translocation 1369722 1370299 188188 188765 NC_060939.1 JAKCWS010000510.1 97.84 True local misassembly 1370300 1371411 188892 190003 NC_060939.1 JAKCWS010000510.1 96.67 True indel: indel (<= 5bp) 1371413 1372924 190004 191515 NC_060939.1 JAKCWS010000510.1 96.43 True local misassembly 1368980 1370854 192077 193946 NC_060939.1 JAKCWS010000510.1 95.68 True translocation 94790100 94797761 193947 201602 NC_060927.1 JAKCWS010000510.1 96.59 True translocation 1470123 1471097 201603 202577 NC_060939.1 JAKCWS010000510.1 97.71 True local misassembly 1472876 1475154 204521 206810 NC_060939.1 JAKCWS010000510.1 96.94 True fake: not a misassembly (possible transposable element) 1442824 1446668 207354 211199 NC_060939.1 JAKCWS010000510.1 96.96 True fake: not a misassembly (possible transposable element) 1474750 1478244 211200 214678 NC_060939.1 JAKCWS010000510.1 97.65 True translocation 1431965 1432710 215215 215960 NC_060945.1 JAKCWS010000510.1 95.98 True indel: indel (<= 5bp) 1432716 1433347 215961 216592 NC_060945.1 JAKCWS010000510.1 97.31 True fake: not a misassembly (possible transposable element) 1475079 1478244 216884 220039 NC_060939.1 JAKCWS010000510.1 98.26 True fake: not a misassembly (possible transposable element) 1431965 1432710 220576 221321 NC_060945.1 JAKCWS010000510.1 95.98 True indel: indel (<= 5bp) 1432716 1433347 221322 221953 NC_060945.1 JAKCWS010000510.1 97.31 True fake: not a misassembly (possible transposable element) 1475079 1478244 222245 225400 NC_060939.1 JAKCWS010000510.1 98.23 True fake: not a misassembly (possible transposable element) 1431965 1432710 225937 226682 NC_060945.1 JAKCWS010000510.1 95.98 True indel: indel (<= 5bp) 1432716 1433347 226683 227314 NC_060945.1 JAKCWS010000510.1 97.31 True translocation 1475079 1477632 227606 230165 NC_060939.1 JAKCWS010000510.1 97.44 True local misassembly 1474634 1478742 230166 234258 NC_060939.1 JAKCWS010000510.1 97.4 True translocation 732832 738731 234259 240139 NC_060937.1 JAKCWS010000510.1 96.09 True relocation, inconsistency = -611417 127694 133025 240519 245847 NC_060937.1 JAKCWS010000510.1 96.35 True translocation 1367079 1374416 245848 253173 NC_060939.1 JAKCWS010000510.1 96.5 True translocation 1274769 1280975 253844 260050 NC_060945.1 JAKCWS010000510.1 96.46 True translocation 4528164 4530476 261871 264179 NC_060937.1 JAKCWS010000510.1 97.06 True relocation, inconsistency = -1375841 3155842 3157606 265386 267154 NC_060937.1 JAKCWS010000510.1 97.0 True translocation 1801420 1804440 268169 271188 NC_060945.1 JAKCWS010000510.1 95.8 True translocation 96066 98506 271277 273717 NC_060937.1 JAKCWS010000510.1 96.92 True translocation 95244202 95248526 273718 278041 NC_060927.1 JAKCWS010000510.1 97.09 True translocation 133070 134292 280758 281985 NC_060937.1 JAKCWS010000510.1 96.42 True relocation, inconsistency = 4520550 4654936 4656026 282079 283174 NC_060937.1 JAKCWS010000510.1 96.53 True translocation 1461405 1465032 283410 287036 NC_060939.1 JAKCWS010000510.1 99.5 True translocation 4907918 4909640 288981 290703 NC_060937.1 JAKCWS010000510.1 97.74 True translocation 1461405 1465032 293940 297571 NC_060939.1 JAKCWS010000510.1 98.95 True translocation 4907918 4909640 297794 299516 NC_060937.1 JAKCWS010000510.1 97.74 True translocation 1461446 1465032 302794 306379 NC_060939.1 JAKCWS010000510.1 99.47 True relocation, inconsistency = -48934 1416606 1423853 306887 313887 NC_060939.1 JAKCWS010000510.1 95.49 True relocation, inconsistency = 22583 1446437 1448215 313888 315666 NC_060939.1 JAKCWS010000510.1 99.61 True indel: indel (<= 5bp) 1448220 1450572 315667 318019 NC_060939.1 JAKCWS010000510.1 99.92 True local misassembly 1453849 1459719 322094 327965 NC_060939.1 JAKCWS010000510.1 98.88 True local misassembly 1461859 1464527 330485 333153 NC_060939.1 JAKCWS010000510.1 99.66 True local misassembly 1464528 1465091 333531 334094 NC_060939.1 JAKCWS010000510.1 97.52 True local misassembly 1467397 1471097 335860 339691 NC_060939.1 JAKCWS010000510.1 95.9 True local misassembly 1471578 1473897 339963 342281 NC_060939.1 JAKCWS010000510.1 98.45 True local misassembly 1471032 1477702 343126 349796 NC_060939.1 JAKCWS010000510.1 98.91 True local misassembly 1476206 1481741 349797 355327 NC_060939.1 JAKCWS010000510.1 98.4 True relocation, inconsistency = 11258 1493000 1508215 355328 370543 NC_060939.1 JAKCWS010000510.1 99.46 True relocation, inconsistency = 16965 1525181 1850111 370544 695704 NC_060939.1 JAKCWS010000510.1 99.51 True translocation 4017067 4018239 695753 696925 NC_060946.1 JAKCWS010000510.1 99.49 True indel: indel (> 5bp) 4018248 4020852 696926 699530 NC_060946.1 JAKCWS010000510.1 99.69 True indel: indel (<= 5bp) 4020853 4022951 699535 701633 NC_060946.1 JAKCWS010000510.1 99.33 True local misassembly 4022952 4024878 702213 704139 NC_060946.1 JAKCWS010000510.1 98.91 True indel: indel (> 5bp) 4024879 4026803 704154 706078 NC_060946.1 JAKCWS010000510.1 99.53 True indel: indel (<= 5bp) 4026804 4027403 706080 706679 NC_060946.1 JAKCWS010000510.1 99.5 True indel: indel (> 5bp) 4027468 4029075 706703 708310 NC_060946.1 JAKCWS010000510.1 98.69 True local misassembly 4029076 4029849 708458 709231 NC_060946.1 JAKCWS010000510.1 99.61 True local misassembly 4029850 4031191 709523 710864 NC_060946.1 JAKCWS010000510.1 99.85 True local misassembly 4024879 4026803 710879 712803 NC_060946.1 JAKCWS010000510.1 99.53 True indel: indel (<= 5bp) 4026804 4027403 712805 713404 NC_060946.1 JAKCWS010000510.1 99.5 True indel: indel (> 5bp) 4027468 4029075 713428 715035 NC_060946.1 JAKCWS010000510.1 98.69 True local misassembly 4029076 4029849 715183 715956 NC_060946.1 JAKCWS010000510.1 99.61 True local misassembly 4029850 4031191 716248 717589 NC_060946.1 JAKCWS010000510.1 99.85 True relocation, inconsistency = -78934 3952272 3954196 717604 719528 NC_060946.1 JAKCWS010000510.1 99.53 True indel: indel (<= 5bp) 3954197 3954796 719530 720129 NC_060946.1 JAKCWS010000510.1 99.67 True indel: indel (> 5bp) 3954845 3956452 720153 721760 NC_060946.1 JAKCWS010000510.1 98.94 True local misassembly 3956600 3958864 721761 724025 NC_060946.1 JAKCWS010000510.1 99.43 True indel: indel (> 5bp) 3958865 3960789 724038 725962 NC_060946.1 JAKCWS010000510.1 99.27 True indel: indel (<= 5bp) 3960790 3961389 725964 726563 NC_060946.1 JAKCWS010000510.1 99.33 True indel: indel (> 5bp) 3961439 3962250 726564 727375 NC_060946.1 JAKCWS010000510.1 97.17 True indel: indel (<= 5bp) 3962252 3963070 727376 728194 NC_060946.1 JAKCWS010000510.1 99.51 True local misassembly 3963218 3965482 728195 730459 NC_060946.1 JAKCWS010000510.1 99.65 True indel: indel (> 5bp) 3965483 3967407 730468 732392 NC_060946.1 JAKCWS010000510.1 99.27 True indel: indel (<= 5bp) 3967408 3968007 732394 732993 NC_060946.1 JAKCWS010000510.1 99.33 True indel: indel (> 5bp) 3968071 3968864 733012 733805 NC_060946.1 JAKCWS010000510.1 97.86 True indel: indel (<= 5bp) 3968866 3969684 733806 734624 NC_060946.1 JAKCWS010000510.1 99.51 True local misassembly 3969832 3972096 734625 736889 NC_060946.1 JAKCWS010000510.1 99.69 True indel: indel (> 5bp) 3972097 3973465 736904 738272 NC_060946.1 JAKCWS010000510.1 99.49 True indel: indel (<= 5bp) 3973466 3974021 738276 738831 NC_060946.1 JAKCWS010000510.1 99.82 True indel: indel (<= 5bp) 3974022 3974621 738833 739432 NC_060946.1 JAKCWS010000510.1 99.83 True indel: indel (> 5bp) 3974670 3976277 739456 741063 NC_060946.1 JAKCWS010000510.1 98.94 True local misassembly 3976425 3977345 741064 741984 NC_060946.1 JAKCWS010000510.1 99.46 True local misassembly 3977346 3978689 742276 743619 NC_060946.1 JAKCWS010000510.1 99.93 True indel: indel (> 5bp) 3978690 3979855 743630 744795 NC_060946.1 JAKCWS010000510.1 99.31 True indel: indel (> 5bp) 3979865 3980614 744796 745545 NC_060946.1 JAKCWS010000510.1 99.87 True indel: indel (<= 5bp) 3980615 3981214 745547 746146 NC_060946.1 JAKCWS010000510.1 99.83 True indel: indel (> 5bp) 3981263 3982870 746170 747777 NC_060946.1 JAKCWS010000510.1 98.94 True local misassembly 3983018 3983914 747778 748674 NC_060946.1 JAKCWS010000510.1 99.46 True local misassembly 3989926 3991879 748675 750628 NC_060946.1 JAKCWS010000510.1 99.54 True indel: indel (<= 5bp) 3991880 3993248 750633 752001 NC_060946.1 JAKCWS010000510.1 99.63 True indel: indel (<= 5bp) 3993249 3993804 752005 752560 NC_060946.1 JAKCWS010000510.1 99.82 True indel: indel (<= 5bp) 3993805 3994404 752562 753161 NC_060946.1 JAKCWS010000510.1 99.83 True indel: indel (> 5bp) 3994457 3996064 753185 754792 NC_060946.1 JAKCWS010000510.1 99.0 True local misassembly 3996212 3998480 754793 757061 NC_060946.1 JAKCWS010000510.1 99.56 True indel: indel (> 5bp) 3998481 3999849 757072 758440 NC_060946.1 JAKCWS010000510.1 99.63 True indel: indel (<= 5bp) 3999850 4000405 758444 758999 NC_060946.1 JAKCWS010000510.1 99.82 True indel: indel (<= 5bp) 4000406 4001005 759001 759600 NC_060946.1 JAKCWS010000510.1 99.67 True indel: indel (> 5bp) 4001058 4002665 759624 761231 NC_060946.1 JAKCWS010000510.1 98.94 True local misassembly 4002813 4003733 761232 762152 NC_060946.1 JAKCWS010000510.1 99.46 True local misassembly 4003734 4005081 762444 763791 NC_060946.1 JAKCWS010000510.1 99.7 True indel: indel (> 5bp) 4005082 4006247 763798 764963 NC_060946.1 JAKCWS010000510.1 99.49 True indel: indel (> 5bp) 4006257 4007006 764964 765713 NC_060946.1 JAKCWS010000510.1 99.87 True indel: indel (<= 5bp) 4007007 4007606 765715 766314 NC_060946.1 JAKCWS010000510.1 99.67 True indel: indel (> 5bp) 4007659 4009266 766338 767945 NC_060946.1 JAKCWS010000510.1 99.07 True translocation 2017806 2064538 767946 813871 NC_060939.1 JAKCWS010000510.1 96.43 True translocation 5358332 5533693 813872 991623 NC_060937.1 JAKCWS010000510.1 97.99 True translocation 1865489 2033088 991639 1159351 NC_060938.1 JAKCWS010000510.1 99.36 True CONTIG JAKCWS010000510.1 1159368 misassembled 2629 11413 1 8700 NC_060937.1 JAKCWS010000511.1 98.27 True local misassembly 15776 26431 8701 19346 NC_060937.1 JAKCWS010000511.1 98.75 True translocation 2554337 2555229 19527 20419 NC_060946.1 JAKCWS010000511.1 99.66 True indel: indel (<= 5bp) 2555230 2555846 20425 21041 NC_060946.1 JAKCWS010000511.1 99.84 True indel: indel (> 5bp) 2555945 2556779 21120 21954 NC_060946.1 JAKCWS010000511.1 99.64 True indel: indel (<= 5bp) 2557046 2558248 22216 23418 NC_060946.1 JAKCWS010000511.1 99.83 True indel: indel (> 5bp) 2558622 2559291 23777 24446 NC_060946.1 JAKCWS010000511.1 99.7 True indel: indel (<= 5bp) 2559292 2559962 24452 25122 NC_060946.1 JAKCWS010000511.1 99.7 True indel: indel (<= 5bp) 2559963 2560820 25128 25985 NC_060946.1 JAKCWS010000511.1 100.0 True indel: indel (<= 5bp) 2560893 2561939 26063 27109 NC_060946.1 JAKCWS010000511.1 99.9 True indel: indel (> 5bp) 2562198 2562839 27338 27979 NC_060946.1 JAKCWS010000511.1 99.84 True indel: stretch of mismatches 2562946 2563474 28086 28614 NC_060946.1 JAKCWS010000511.1 99.81 True local misassembly 2564503 2565364 29628 30489 NC_060946.1 JAKCWS010000511.1 99.88 True local misassembly 2565678 2566294 31657 32273 NC_060946.1 JAKCWS010000511.1 99.84 True translocation 16163 36472 33185 53329 NC_060937.1 JAKCWS010000511.1 98.17 True translocation 2585882 2586526 53964 54608 NC_060946.1 JAKCWS010000511.1 99.84 True indel: indel (<= 5bp) 2586527 2587080 54614 55167 NC_060946.1 JAKCWS010000511.1 99.82 True translocation 11419 36472 57797 82296 NC_060937.1 JAKCWS010000511.1 96.74 True translocation 2585882 2586526 82886 83530 NC_060946.1 JAKCWS010000511.1 99.84 True indel: indel (> 5bp) 2586527 2587080 83546 84099 NC_060946.1 JAKCWS010000511.1 99.82 True local misassembly 2589480 2590283 86474 87277 NC_060946.1 JAKCWS010000511.1 99.75 True relocation, inconsistency = -38566 2551919 2553794 87479 89354 NC_060946.1 JAKCWS010000511.1 100.0 True local misassembly 2554337 2555229 89922 90814 NC_060946.1 JAKCWS010000511.1 99.78 True indel: indel (<= 5bp) 2555230 2555846 90820 91436 NC_060946.1 JAKCWS010000511.1 99.84 True local misassembly 2556110 2557045 91515 92450 NC_060946.1 JAKCWS010000511.1 99.68 True indel: indel (<= 5bp) 2557046 2558553 92456 93963 NC_060946.1 JAKCWS010000511.1 99.87 True indel: indel (<= 5bp) 2558622 2559291 94027 94696 NC_060946.1 JAKCWS010000511.1 99.7 True indel: indel (<= 5bp) 2559292 2560820 94702 96230 NC_060946.1 JAKCWS010000511.1 99.93 True indel: indel (<= 5bp) 2560893 2561939 96308 97354 NC_060946.1 JAKCWS010000511.1 100.0 True translocation 21466 22311 97884 98729 NC_060937.1 JAKCWS010000511.1 99.88 True local misassembly 22876 23446 99289 99859 NC_060937.1 JAKCWS010000511.1 100.0 True indel: indel (<= 5bp) 23447 25255 99865 101673 NC_060937.1 JAKCWS010000511.1 99.94 True indel: indel (<= 5bp) 25256 26054 101679 102477 NC_060937.1 JAKCWS010000511.1 99.87 True indel: stretch of mismatches 26121 26775 102544 103198 NC_060937.1 JAKCWS010000511.1 100.0 True indel: indel (<= 5bp) 26776 28254 103204 104682 NC_060937.1 JAKCWS010000511.1 99.86 True indel: indel (<= 5bp) 28255 28961 104688 105394 NC_060937.1 JAKCWS010000511.1 100.0 True local misassembly 29943 30595 106346 106998 NC_060937.1 JAKCWS010000511.1 100.0 True indel: indel (<= 5bp) 30992 31746 107400 108154 NC_060937.1 JAKCWS010000511.1 100.0 True indel: indel (<= 5bp) 31752 33004 108155 109407 NC_060937.1 JAKCWS010000511.1 99.84 True translocation 2573264 2573973 109408 110117 NC_060946.1 JAKCWS010000511.1 99.72 True indel: indel (<= 5bp) 2573979 2574857 110118 110996 NC_060946.1 JAKCWS010000511.1 99.54 True translocation 40002 72655 111190 144583 NC_060937.1 JAKCWS010000511.1 97.15 True local misassembly 70187 73986 144584 148383 NC_060937.1 JAKCWS010000511.1 99.84 True relocation, inconsistency = 58573 132684 142854 148508 158883 NC_060937.1 JAKCWS010000511.1 96.47 True relocation, inconsistency = -51828 91451 92410 159308 160267 NC_060937.1 JAKCWS010000511.1 99.24 True relocation, inconsistency = 71155 163566 179961 160268 177251 NC_060937.1 JAKCWS010000511.1 96.31 True relocation, inconsistency = -19506 160456 162412 177252 179208 NC_060937.1 JAKCWS010000511.1 99.0 True local misassembly 164741 171694 181555 188508 NC_060937.1 JAKCWS010000511.1 99.57 True local misassembly 172068 173934 188509 190375 NC_060937.1 JAKCWS010000511.1 99.48 True local misassembly 170937 174249 190376 193688 NC_060937.1 JAKCWS010000511.1 99.55 True local misassembly 174250 177824 194067 197641 NC_060937.1 JAKCWS010000511.1 99.78 True local misassembly 177825 179623 197852 199650 NC_060937.1 JAKCWS010000511.1 99.72 True relocation, inconsistency = -74611 105013 109608 199651 204246 NC_060937.1 JAKCWS010000511.1 99.63 True relocation, inconsistency = 55087 164696 177502 204247 217431 NC_060937.1 JAKCWS010000511.1 96.7 True local misassembly 172625 174249 217432 219056 NC_060937.1 JAKCWS010000511.1 99.35 True local misassembly 174250 177818 219435 223003 NC_060937.1 JAKCWS010000511.1 99.78 True local misassembly 177819 182733 223214 228128 NC_060937.1 JAKCWS010000511.1 99.51 True relocation, inconsistency = 51023 233757 234322 228129 228694 NC_060937.1 JAKCWS010000511.1 97.18 True indel: indel (<= 5bp) 234323 236257 228700 230634 NC_060937.1 JAKCWS010000511.1 97.52 True local misassembly 236633 238658 230635 232660 NC_060937.1 JAKCWS010000511.1 99.61 True local misassembly 240573 246302 233078 238807 NC_060937.1 JAKCWS010000511.1 99.76 True local misassembly 246303 246903 241980 242580 NC_060937.1 JAKCWS010000511.1 99.67 True indel: indel (<= 5bp) 246904 248937 242582 244615 NC_060937.1 JAKCWS010000511.1 100.0 True local misassembly 249316 258743 244616 254043 NC_060937.1 JAKCWS010000511.1 99.81 True local misassembly 265706 268661 254108 257063 NC_060937.1 JAKCWS010000511.1 99.83 True indel: indel (<= 5bp) 268662 270979 257065 259382 NC_060937.1 JAKCWS010000511.1 99.91 True local misassembly 271358 272758 259383 260783 NC_060937.1 JAKCWS010000511.1 99.29 True relocation, inconsistency = 13818 289042 296389 263249 270637 NC_060937.1 JAKCWS010000511.1 98.88 True relocation, inconsistency = -22299 274091 276325 270638 272881 NC_060937.1 JAKCWS010000511.1 96.83 True local misassembly 280791 282185 272965 274359 NC_060937.1 JAKCWS010000511.1 98.78 True local misassembly 282559 283900 274360 275701 NC_060937.1 JAKCWS010000511.1 99.11 True indel: indel (> 5bp) 283901 284557 275744 276400 NC_060937.1 JAKCWS010000511.1 99.7 True local misassembly 288297 290292 276758 278753 NC_060937.1 JAKCWS010000511.1 99.65 True indel: indel (> 5bp) 290293 290929 278796 279432 NC_060937.1 JAKCWS010000511.1 97.49 True local misassembly 290930 298873 279809 287752 NC_060937.1 JAKCWS010000511.1 99.32 True relocation, inconsistency = -8649 290225 307383 287753 304715 NC_060937.1 JAKCWS010000511.1 95.85 True local misassembly 302709 308453 304716 310461 NC_060937.1 JAKCWS010000511.1 98.64 True local misassembly 306111 309825 311288 315002 NC_060937.1 JAKCWS010000511.1 99.33 True relocation, inconsistency = 23589 333633 349482 315221 331616 NC_060937.1 JAKCWS010000511.1 96.32 True local misassembly 355786 356371 331617 332203 NC_060937.1 JAKCWS010000511.1 99.47 True translocation 2721062 2725963 332204 337067 NC_060946.1 JAKCWS010000511.1 97.94 True translocation 595402 603392 337542 345909 NC_060937.1 JAKCWS010000511.1 95.18 True relocation, inconsistency = 20105 623858 624415 346270 346827 NC_060937.1 JAKCWS010000511.1 99.16 True relocation, inconsistency = -190388 434028 444498 346828 357674 NC_060937.1 JAKCWS010000511.1 95.36 True local misassembly 439045 440615 358022 359592 NC_060937.1 JAKCWS010000511.1 99.68 True indel: indel (<= 5bp) 440617 445777 359593 364753 NC_060937.1 JAKCWS010000511.1 99.59 True relocation, inconsistency = 500628 946406 949153 364754 367501 NC_060937.1 JAKCWS010000511.1 99.25 True local misassembly 949597 950204 367735 368342 NC_060937.1 JAKCWS010000511.1 99.01 True indel: indel (<= 5bp) 950206 950904 368343 369041 NC_060937.1 JAKCWS010000511.1 98.28 True relocation, inconsistency = -263978 686927 693357 369042 375641 NC_060937.1 JAKCWS010000511.1 96.12 True relocation, inconsistency = 33635 726993 728995 375642 377644 NC_060937.1 JAKCWS010000511.1 98.44 True local misassembly 734669 737556 377698 380585 NC_060937.1 JAKCWS010000511.1 99.69 True local misassembly 733012 734242 380909 382139 NC_060937.1 JAKCWS010000511.1 97.89 True indel: indel (<= 5bp) 734243 736862 382145 384764 NC_060937.1 JAKCWS010000511.1 98.47 True relocation, inconsistency = -630009 107331 110940 385242 388861 NC_060937.1 JAKCWS010000511.1 96.52 True relocation, inconsistency = 398298 509314 511424 388937 391047 NC_060937.1 JAKCWS010000511.1 99.67 True relocation, inconsistency = 252220 763832 764923 391235 392326 NC_060937.1 JAKCWS010000511.1 99.56 True local misassembly 763832 765290 392327 393785 NC_060937.1 JAKCWS010000511.1 99.31 True relocation, inconsistency = -253858 511433 512268 393786 394621 NC_060937.1 JAKCWS010000511.1 99.9 True relocation, inconsistency = -411425 101263 102390 395041 396168 NC_060937.1 JAKCWS010000511.1 99.47 True local misassembly 102764 103840 396169 397245 NC_060937.1 JAKCWS010000511.1 99.86 True local misassembly 106837 108571 397246 398990 NC_060937.1 JAKCWS010000511.1 96.21 True translocation 3401970 3406180 398991 403207 NC_060946.1 JAKCWS010000511.1 96.54 True translocation 167633 181785 403378 417373 NC_060937.1 JAKCWS010000511.1 95.07 True relocation, inconsistency = 34260 216046 216855 417374 418183 NC_060937.1 JAKCWS010000511.1 96.62 True indel: indel (<= 5bp) 216861 223267 418184 424590 NC_060937.1 JAKCWS010000511.1 99.75 True local misassembly 223724 227919 424591 428786 NC_060937.1 JAKCWS010000511.1 99.59 True local misassembly 228294 234322 428787 434815 NC_060937.1 JAKCWS010000511.1 99.6 True local misassembly 235162 236253 436037 437128 NC_060937.1 JAKCWS010000511.1 99.63 True indel: indel (<= 5bp) 236254 238497 437130 439373 NC_060937.1 JAKCWS010000511.1 99.51 True indel: indel (<= 5bp) 238498 240118 439375 440995 NC_060937.1 JAKCWS010000511.1 99.81 True local misassembly 240492 241277 440996 441781 NC_060937.1 JAKCWS010000511.1 99.62 True local misassembly 241656 242956 441782 443082 NC_060937.1 JAKCWS010000511.1 99.0 True fake: not a misassembly (possible transposable element) 2654053 2656876 443083 445906 NC_060946.1 JAKCWS010000511.1 98.9 True fake: not a misassembly (possible transposable element) 251758 259038 445907 453187 NC_060937.1 JAKCWS010000511.1 99.6 True relocation, inconsistency = 283612 542736 547643 453273 458180 NC_060937.1 JAKCWS010000511.1 99.74 True relocation, inconsistency = -214424 333633 344479 458594 469398 NC_060937.1 JAKCWS010000511.1 98.88 True relocation, inconsistency = 236188 580789 582846 469520 471582 NC_060937.1 JAKCWS010000511.1 98.61 True relocation, inconsistency = -243788 339059 342886 471583 475410 NC_060937.1 JAKCWS010000511.1 99.56 True local misassembly 343260 344054 475411 476205 NC_060937.1 JAKCWS010000511.1 97.36 True indel: indel (<= 5bp) 344055 345910 476211 478066 NC_060937.1 JAKCWS010000511.1 98.71 True local misassembly 340355 340882 478814 479341 NC_060937.1 JAKCWS010000511.1 96.4 True indel: indel (<= 5bp) 340883 342886 479347 481350 NC_060937.1 JAKCWS010000511.1 99.75 True local misassembly 343260 344054 481351 482145 NC_060937.1 JAKCWS010000511.1 97.36 True indel: indel (<= 5bp) 344055 345910 482151 484006 NC_060937.1 JAKCWS010000511.1 98.71 True translocation 2720109 2728666 484754 493318 NC_060946.1 JAKCWS010000511.1 97.43 True translocation 573109 576027 493319 496237 NC_060937.1 JAKCWS010000511.1 99.47 True translocation 2723486 2725883 496238 498635 NC_060946.1 JAKCWS010000511.1 99.41 True translocation 591325 602846 498636 510534 NC_060937.1 JAKCWS010000511.1 96.55 True translocation 2947423 2949562 510624 512764 NC_060946.1 JAKCWS010000511.1 98.79 True translocation 888650 889559 512765 513674 NC_060937.1 JAKCWS010000511.1 99.44 True indel: indel (<= 5bp) 889560 890699 513676 514815 NC_060937.1 JAKCWS010000511.1 96.93 True local misassembly 891995 893501 516444 517950 NC_060937.1 JAKCWS010000511.1 96.42 True local misassembly 893502 894628 518319 519445 NC_060937.1 JAKCWS010000511.1 96.27 True local misassembly 894629 895381 519820 520572 NC_060937.1 JAKCWS010000511.1 95.48 True translocation 2915104 2915849 520578 521323 NC_060946.1 JAKCWS010000511.1 95.44 True indel: indel (<= 5bp) 2915855 2919414 521324 524883 NC_060946.1 JAKCWS010000511.1 98.74 True local misassembly 2919415 2927127 525262 532974 NC_060946.1 JAKCWS010000511.1 99.75 True local misassembly 2927976 2932795 533361 538180 NC_060946.1 JAKCWS010000511.1 99.73 True local misassembly 2933036 2933860 538510 539334 NC_060946.1 JAKCWS010000511.1 99.27 True translocation 938934 947395 539359 547819 NC_060937.1 JAKCWS010000511.1 98.87 True local misassembly 946473 947032 548400 548959 NC_060937.1 JAKCWS010000511.1 99.31 True relocation, inconsistency = -257599 689434 692227 548960 551753 NC_060937.1 JAKCWS010000511.1 99.68 True indel: indel (<= 5bp) 692228 693487 551755 553014 NC_060937.1 JAKCWS010000511.1 98.89 True relocation, inconsistency = 256853 950719 951707 553393 554381 NC_060937.1 JAKCWS010000511.1 99.69 True local misassembly 953536 960119 554382 560959 NC_060937.1 JAKCWS010000511.1 98.59 True translocation 3352673 3355333 561295 563960 NC_060946.1 JAKCWS010000511.1 97.6 True relocation, inconsistency = -353063 3002271 3002965 563961 564655 NC_060946.1 JAKCWS010000511.1 96.4 True indel: stretch of mismatches 3003343 3004093 565033 565783 NC_060946.1 JAKCWS010000511.1 96.54 True indel: indel (<= 5bp) 3004099 3004686 565784 566371 NC_060946.1 JAKCWS010000511.1 98.3 True local misassembly 3005065 3007268 566372 568575 NC_060946.1 JAKCWS010000511.1 99.86 True local misassembly 3007269 3009145 568954 570830 NC_060946.1 JAKCWS010000511.1 99.79 True local misassembly 3009146 3013126 571204 575184 NC_060946.1 JAKCWS010000511.1 98.64 True local misassembly 3009865 3011317 576980 578432 NC_060946.1 JAKCWS010000511.1 97.11 True local misassembly 3011696 3012356 578433 579093 NC_060946.1 JAKCWS010000511.1 97.73 True local misassembly 3014261 3017099 580240 583078 NC_060946.1 JAKCWS010000511.1 98.92 True translocation 958902 964074 583079 588251 NC_060937.1 JAKCWS010000511.1 99.38 True fake: not a misassembly (possible transposable element) 1124381 1127410 588252 591282 NC_060937.1 JAKCWS010000511.1 96.92 True fake: not a misassembly (possible transposable element) 973251 974319 591283 592351 NC_060937.1 JAKCWS010000511.1 99.36 True relocation, inconsistency = 3681588 4656418 4657027 592862 593471 NC_060937.1 JAKCWS010000511.1 97.87 True indel: indel (<= 5bp) 4657029 4657604 593472 594047 NC_060937.1 JAKCWS010000511.1 97.57 True relocation, inconsistency = -4549239 108481 110931 594163 596603 NC_060937.1 JAKCWS010000511.1 96.53 True relocation, inconsistency = 863346 974306 979418 596632 601744 NC_060937.1 JAKCWS010000511.1 99.47 True local misassembly 981666 982851 601745 602930 NC_060937.1 JAKCWS010000511.1 98.5 True fake: not a misassembly (possible transposable element) 999637 1001402 603917 605682 NC_060937.1 JAKCWS010000511.1 98.24 True fake: not a misassembly (possible transposable element) 989271 1004421 605683 620412 NC_060937.1 JAKCWS010000511.1 96.52 True relocation, inconsistency = -10170 994252 1006087 620413 632746 NC_060937.1 JAKCWS010000511.1 95.95 True relocation, inconsistency = -91940 914148 918453 632747 636965 NC_060937.1 JAKCWS010000511.1 96.17 True local misassembly 914490 918453 636966 640924 NC_060937.1 JAKCWS010000511.1 98.98 True translocation 3038987 3040685 640943 642641 NC_060946.1 JAKCWS010000511.1 99.36 True translocation 1016010 1020668 642642 647300 NC_060937.1 JAKCWS010000511.1 99.85 True local misassembly 1022580 1026099 647301 650820 NC_060937.1 JAKCWS010000511.1 99.84 True local misassembly 1020866 1039442 650821 669400 NC_060937.1 JAKCWS010000511.1 99.71 True local misassembly 1049499 1050248 672883 673632 NC_060937.1 JAKCWS010000511.1 95.33 True indel: indel (> 5bp) 1050554 1055341 673944 678731 NC_060937.1 JAKCWS010000511.1 99.71 True local misassembly 1055720 1059412 678732 682424 NC_060937.1 JAKCWS010000511.1 98.02 True translocation 3093563 3094791 682425 683653 NC_060946.1 JAKCWS010000511.1 98.66 True indel: indel (<= 5bp) 3094792 3100641 683655 689504 NC_060946.1 JAKCWS010000511.1 99.76 True local misassembly 3096517 3098958 689505 691946 NC_060946.1 JAKCWS010000511.1 98.44 True indel: indel (<= 5bp) 3098959 3099974 691952 692967 NC_060946.1 JAKCWS010000511.1 96.26 True local misassembly 3101913 3103611 698744 700442 NC_060946.1 JAKCWS010000511.1 99.82 True indel: indel (<= 5bp) 3103613 3106772 700443 703602 NC_060946.1 JAKCWS010000511.1 99.75 True local misassembly 3106550 3108750 704262 706462 NC_060946.1 JAKCWS010000511.1 99.32 True local misassembly 3108751 3109703 706841 707793 NC_060946.1 JAKCWS010000511.1 99.9 True indel: indel (<= 5bp) 3109704 3110255 707795 708346 NC_060946.1 JAKCWS010000511.1 99.64 True local misassembly 3110256 3118066 708722 716532 NC_060946.1 JAKCWS010000511.1 99.54 True indel: indel (<= 5bp) 3118067 3119711 716538 718182 NC_060946.1 JAKCWS010000511.1 98.64 True translocation 1103096 1133037 718183 747378 NC_060937.1 JAKCWS010000511.1 96.99 True local misassembly 1137163 1140664 747379 750880 NC_060937.1 JAKCWS010000511.1 99.79 True indel: indel (<= 5bp) 1140666 1143067 750881 753282 NC_060937.1 JAKCWS010000511.1 99.58 True translocation 3166327 3167505 753283 754461 NC_060946.1 JAKCWS010000511.1 97.34 True local misassembly 3167716 3169081 754462 755827 NC_060946.1 JAKCWS010000511.1 98.76 True local misassembly 3171056 3172852 755828 757624 NC_060946.1 JAKCWS010000511.1 99.5 True local misassembly 3172853 3177791 757998 762936 NC_060946.1 JAKCWS010000511.1 99.64 True translocation 1196889 1197700 763963 764774 NC_060937.1 JAKCWS010000511.1 98.15 True relocation, inconsistency = -433983 764000 765029 765057 766086 NC_060937.1 JAKCWS010000511.1 98.13 True translocation 3106946 3108832 766087 767973 NC_060946.1 JAKCWS010000511.1 98.94 True local misassembly 3109704 3110263 768846 769405 NC_060946.1 JAKCWS010000511.1 98.93 True local misassembly 3110489 3111532 770008 771051 NC_060946.1 JAKCWS010000511.1 99.14 True local misassembly 3111533 3114208 771430 774105 NC_060946.1 JAKCWS010000511.1 99.03 True local misassembly 3111533 3112439 774874 775780 NC_060946.1 JAKCWS010000511.1 99.12 True indel: indel (<= 5bp) 3112441 3112997 775781 776337 NC_060946.1 JAKCWS010000511.1 98.92 True indel: indel (> 5bp) 3113082 3114187 776338 777443 NC_060946.1 JAKCWS010000511.1 99.01 True local misassembly 3114188 3115705 777654 779171 NC_060946.1 JAKCWS010000511.1 98.62 True indel: indel (<= 5bp) 3115706 3116299 779173 779766 NC_060946.1 JAKCWS010000511.1 97.47 True relocation, inconsistency = -7051 3109704 3110262 780222 780780 NC_060946.1 JAKCWS010000511.1 99.11 True local misassembly 3110489 3111724 781384 782619 NC_060946.1 JAKCWS010000511.1 98.4 True translocation 806002 807502 782620 784120 NC_060937.1 JAKCWS010000511.1 99.41 True local misassembly 802095 805369 784121 787396 NC_060937.1 JAKCWS010000511.1 98.6 True relocation, inconsistency = 406624 1216427 1226388 791830 801832 NC_060937.1 JAKCWS010000511.1 98.65 True translocation 3234579 3235618 801833 802872 NC_060946.1 JAKCWS010000511.1 99.28 True local misassembly 3236165 3242887 802873 809595 NC_060946.1 JAKCWS010000511.1 99.58 True relocation, inconsistency = 25238 3268126 3268900 809596 810370 NC_060946.1 JAKCWS010000511.1 96.31 True local misassembly 3269069 3274477 810371 815779 NC_060946.1 JAKCWS010000511.1 98.82 True local misassembly 3274646 3275383 815780 816517 NC_060946.1 JAKCWS010000511.1 97.43 True relocation, inconsistency = 8529 3283913 3287305 816518 819910 NC_060946.1 JAKCWS010000511.1 99.71 True local misassembly 3287306 3290225 822004 824923 NC_060946.1 JAKCWS010000511.1 99.28 True local misassembly 3288767 3290118 826644 827995 NC_060946.1 JAKCWS010000511.1 98.3 True local misassembly 3290287 3291195 827996 828904 NC_060946.1 JAKCWS010000511.1 99.01 True indel: indel (> 5bp) 3291203 3293627 828905 831329 NC_060946.1 JAKCWS010000511.1 99.79 True indel: indel (> 5bp) 3294007 3294563 831715 832271 NC_060946.1 JAKCWS010000511.1 96.23 True local misassembly 3290287 3294756 832304 836780 NC_060946.1 JAKCWS010000511.1 98.48 True translocation 869050 869707 836872 837529 NC_060937.1 JAKCWS010000511.1 96.89 True translocation 2886347 2890282 837530 841467 NC_060946.1 JAKCWS010000511.1 96.6 True relocation, inconsistency = 424641 3314924 3317096 841468 843640 NC_060946.1 JAKCWS010000511.1 98.6 True relocation, inconsistency = -24127 3292970 3302912 843641 853579 NC_060946.1 JAKCWS010000511.1 98.8 True local misassembly 3302174 3306560 853594 857980 NC_060946.1 JAKCWS010000511.1 99.59 True local misassembly 3304224 3305568 857981 859325 NC_060946.1 JAKCWS010000511.1 99.2 True local misassembly 3306561 3309343 860154 862936 NC_060946.1 JAKCWS010000511.1 99.35 True relocation, inconsistency = 16432 3325776 3331621 862937 868777 NC_060946.1 JAKCWS010000511.1 99.37 True fake: not a misassembly (possible transposable element) 2759899 2763911 868778 872774 NC_060946.1 JAKCWS010000511.1 97.21 True fake: not a misassembly (possible transposable element) 3339390 3340801 872775 874186 NC_060946.1 JAKCWS010000511.1 99.13 True local misassembly 3340802 3341707 874565 875470 NC_060946.1 JAKCWS010000511.1 99.45 True local misassembly 3346555 3355804 880072 889331 NC_060946.1 JAKCWS010000511.1 99.08 True relocation, inconsistency = -360949 2994856 2996611 889332 891087 NC_060946.1 JAKCWS010000511.1 99.27 True local misassembly 2996985 2998927 891088 893030 NC_060946.1 JAKCWS010000511.1 99.54 True translocation 1539484 1540574 893031 894123 NC_060945.1 JAKCWS010000511.1 97.75 True translocation 3422236 3424645 895346 897754 NC_060946.1 JAKCWS010000511.1 97.72 True local misassembly 3425589 3427394 898655 900458 NC_060946.1 JAKCWS010000511.1 96.43 True translocation 1011018 1013346 900459 902787 NC_060937.1 JAKCWS010000511.1 96.61 True translocation 1911723 1914378 903234 905887 NC_060945.1 JAKCWS010000511.1 96.62 True translocation 1998197 1999310 905888 907001 NC_060937.1 JAKCWS010000511.1 98.23 True relocation, inconsistency = 1376569 3375880 3377614 907002 908736 NC_060937.1 JAKCWS010000511.1 98.21 True relocation, inconsistency = 1417766 4795512 4796736 908868 910095 NC_060937.1 JAKCWS010000511.1 97.64 True relocation, inconsistency = -35223 4762047 4765599 910629 914228 NC_060937.1 JAKCWS010000511.1 95.25 True translocation 3121695 3125902 914229 918437 NC_060946.1 JAKCWS010000511.1 95.81 True translocation 111315 112144 918438 919267 NC_060937.1 JAKCWS010000511.1 96.18 True relocation, inconsistency = 190060 302314 305102 919377 922162 NC_060937.1 JAKCWS010000511.1 95.95 True relocation, inconsistency = 159299 464837 466881 922598 924632 NC_060937.1 JAKCWS010000511.1 95.78 True translocation 1366196 1369661 924633 928103 NC_060939.1 JAKCWS010000511.1 97.23 True local misassembly 1368659 1369600 928104 929045 NC_060939.1 JAKCWS010000511.1 98.74 True translocation 94800566 94801263 929046 929743 NC_060927.1 JAKCWS010000511.1 97.98 True relocation, inconsistency = 362454 95163881 95167024 929907 933058 NC_060927.1 JAKCWS010000511.1 97.18 True translocation 3409914 3411541 933059 934686 NC_060946.1 JAKCWS010000511.1 97.6 True indel: indel (<= 5bp) 3411542 3412787 934692 935937 NC_060946.1 JAKCWS010000511.1 97.59 True local misassembly 3413166 3414620 935938 937392 NC_060946.1 JAKCWS010000511.1 97.87 True translocation 1559158 1560761 937504 939107 NC_060945.1 JAKCWS010000511.1 96.91 True translocation 964417 967709 939108 942397 NC_060937.1 JAKCWS010000511.1 97.02 True relocation, inconsistency = 43798 1011508 1013045 942398 943935 NC_060937.1 JAKCWS010000511.1 96.57 True translocation 3441611 3446286 943936 948624 NC_060946.1 JAKCWS010000511.1 95.93 True relocation, inconsistency = -55135 3391220 3391970 948693 949443 NC_060946.1 JAKCWS010000511.1 95.74 True indel: indel (> 5bp) 3392357 3393570 949793 951006 NC_060946.1 JAKCWS010000511.1 97.2 True local misassembly 3393949 3395457 951007 952515 NC_060946.1 JAKCWS010000511.1 97.29 True translocation 1366708 1369661 952516 955478 NC_060939.1 JAKCWS010000511.1 96.52 True local misassembly 1368659 1371308 955479 958138 NC_060939.1 JAKCWS010000511.1 96.52 True translocation 3407556 3409458 958454 960356 NC_060946.1 JAKCWS010000511.1 97.64 True local misassembly 3409837 3411541 960357 962061 NC_060946.1 JAKCWS010000511.1 97.65 True indel: indel (<= 5bp) 3411542 3412787 962067 963312 NC_060946.1 JAKCWS010000511.1 97.51 True local misassembly 3413166 3414620 963313 964767 NC_060946.1 JAKCWS010000511.1 98.21 True relocation, inconsistency = -40915 3374427 3382140 965489 973200 NC_060946.1 JAKCWS010000511.1 97.82 True local misassembly 3388166 3389404 973215 974453 NC_060946.1 JAKCWS010000511.1 97.26 True indel: indel (<= 5bp) 3389406 3390271 974454 975319 NC_060946.1 JAKCWS010000511.1 97.11 True local misassembly 3390272 3390836 975693 976257 NC_060946.1 JAKCWS010000511.1 96.46 True indel: indel (> 5bp) 3391220 3396139 976631 981550 NC_060946.1 JAKCWS010000511.1 98.05 True translocation 1308332 1310168 981618 983460 NC_060945.1 JAKCWS010000511.1 96.64 True relocation, inconsistency = 189118 1500111 1503535 984285 987714 NC_060945.1 JAKCWS010000511.1 96.33 True translocation 2654852 2655441 987803 988392 NC_060946.1 JAKCWS010000511.1 97.97 True translocation 789811 791654 990916 992756 NC_060937.1 JAKCWS010000511.1 96.08 True translocation 1559425 1560761 992757 994093 NC_060945.1 JAKCWS010000511.1 96.83 True translocation 964417 967180 994094 996853 NC_060937.1 JAKCWS010000511.1 96.87 True translocation 3406379 3412233 996854 1002706 NC_060946.1 JAKCWS010000511.1 97.37 True local misassembly 3415243 3418732 1002707 1006196 NC_060946.1 JAKCWS010000511.1 97.93 True translocation 1500111 1503535 1006282 1009711 NC_060945.1 JAKCWS010000511.1 96.27 True CONTIG JAKCWS010000511.1 1010112 misassembled 9097899 9106772 1 8872 NC_060937.1 JAKCWS010000512.1 99.18 True indel: indel (> 5bp) 9106896 9152909 8988 54846 NC_060937.1 JAKCWS010000512.1 98.8 True relocation, inconsistency = 91220 9244245 9246540 54962 57257 NC_060937.1 JAKCWS010000512.1 97.45 True translocation 4051037 4092982 57258 99188 NC_060945.1 JAKCWS010000512.1 99.02 True translocation 9244245 9267667 99304 122800 NC_060937.1 JAKCWS010000512.1 98.58 True relocation, scaffold gap is present, inconsistency = -99159 9220367 9228705 174659 183019 NC_060937.1 JAKCWS010000512.1 98.78 True relocation, inconsistency = -137385 9091321 9137457 183020 229044 NC_060937.1 JAKCWS010000512.1 98.99 True translocation 4098189 4184485 229045 315160 NC_060939.1 JAKCWS010000512.1 99.12 True translocation, scaffold gap is present 5636658 5637911 315205 316451 NC_060946.1 JAKCWS010000512.1 97.14 True translocation 4669411 4687377 316452 334464 NC_060939.1 JAKCWS010000512.1 98.72 True translocation 5368716 5424532 334465 390355 NC_060945.1 JAKCWS010000512.1 98.75 True translocation 5532592 5548945 390356 406682 NC_060946.1 JAKCWS010000512.1 98.62 True indel: indel (> 5bp) 5549123 5549750 406801 407428 NC_060946.1 JAKCWS010000512.1 96.07 True translocation 4244179 4270522 407563 433967 NC_060945.1 JAKCWS010000512.1 98.69 True indel: indel (> 5bp) 4270654 4286958 434083 450362 NC_060945.1 JAKCWS010000512.1 99.25 True relocation, inconsistency = -489056 3798086 3833188 450546 485849 NC_060945.1 JAKCWS010000512.1 98.66 True relocation, scaffold gap is present, inconsistency = 1686115 5537670 5568204 504216 534875 NC_060945.1 JAKCWS010000512.1 98.92 True relocation, inconsistency = -88406 5479799 5497754 534876 552772 NC_060945.1 JAKCWS010000512.1 97.78 True translocation 5516784 5602833 552773 638798 NC_060946.1 JAKCWS010000512.1 98.9 True translocation, scaffold gap is present 3118256 3167178 638812 687823 NC_060945.1 JAKCWS010000512.1 99.05 True translocation 4171270 4175682 687824 692243 NC_060939.1 JAKCWS010000512.1 99.22 True translocation 9215267 9260469 692682 737890 NC_060937.1 JAKCWS010000512.1 99.02 True relocation, inconsistency = -43406 9217064 9250073 737891 771041 NC_060937.1 JAKCWS010000512.1 98.75 True CONTIG JAKCWS010000512.1 771079 misassembled 2747941 2785567 37627 1 NC_060938.1 JAKCWS010000513.1 99.08 True translocation 3871185 3943093 109710 37628 NC_060945.1 JAKCWS010000513.1 98.17 True indel: indel (> 5bp) 3850865 3871057 130018 109830 NC_060945.1 JAKCWS010000513.1 98.09 True relocation, scaffold gap is present, inconsistency = -489054 4288564 4300047 181418 169890 NC_060945.1 JAKCWS010000513.1 98.18 True indel: indel (> 5bp) 4270654 4288429 199198 181547 NC_060945.1 JAKCWS010000513.1 98.32 True indel: indel (> 5bp) 4244179 4270522 225732 199314 NC_060945.1 JAKCWS010000513.1 98.67 True indel: indel (<= 5bp) 4242747 4244047 227164 225861 NC_060945.1 JAKCWS010000513.1 95.46 True local misassembly 4199794 4242498 270033 227308 NC_060945.1 JAKCWS010000513.1 98.8 True translocation 5345935 5375497 299846 270164 NC_060946.1 JAKCWS010000513.1 98.67 True translocation 5486959 5500023 312965 299847 NC_060945.1 JAKCWS010000513.1 98.73 True indel: indel (<= 5bp) 5485521 5486824 314403 313098 NC_060945.1 JAKCWS010000513.1 95.54 True local misassembly 5460285 5485278 339513 314543 NC_060945.1 JAKCWS010000513.1 99.05 True translocation, scaffold gap is present 4534136 4579403 403441 358179 NC_060939.1 JAKCWS010000513.1 99.22 True translocation 5528317 5574471 449641 404019 NC_060945.1 JAKCWS010000513.1 97.53 True translocation 5493500 5504231 460383 449642 NC_060946.1 JAKCWS010000513.1 99.37 True relocation, inconsistency = 520512 4929612 4972987 503731 460384 NC_060946.1 JAKCWS010000513.1 99.56 True relocation, inconsistency = 43376 4841008 4886235 548934 503732 NC_060946.1 JAKCWS010000513.1 99.58 True relocation, inconsistency = -433760 5233592 5274767 590088 548935 NC_060946.1 JAKCWS010000513.1 99.61 True relocation, scaffold gap is present, inconsistency = -412526 5637592 5645978 598618 590228 NC_060946.1 JAKCWS010000513.1 98.47 True relocation, inconsistency = 826023 4704809 4811568 705248 598619 NC_060946.1 JAKCWS010000513.1 99.58 True CONTIG JAKCWS010000513.1 705248 misassembled 23912756 24339531 426794 1 NC_060948.1 JAKCWS010000514.1 99.97 True CONTIG JAKCWS010000514.1 426794 correct