S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group 201022451 201101441 87045 10357 NC_060927.1 NC_000001.11 95.46 True translocation 18745 19641 89154 90047 NC_060944.1 NC_000001.11 97.44 True local misassembly 19642 50420 90284 121071 NC_060944.1 NC_000001.11 99.29 True translocation 134520 137312 121110 123902 NC_060943.1 NC_000001.11 99.53 True indel: indel (> 5bp) 137313 149684 123924 136294 NC_060943.1 NC_000001.11 99.43 True translocation 154918 157796 137081 139960 NC_060935.1 NC_000001.11 99.13 True local misassembly 161216 165782 139961 144527 NC_060935.1 NC_000001.11 99.54 True indel: indel (> 5bp) 165783 178574 144562 157348 NC_060935.1 NC_000001.11 99.44 True indel: indel (> 5bp) 178718 183622 157349 162235 NC_060935.1 NC_000001.11 99.12 True indel: indel (> 5bp) 183623 201466 162258 180126 NC_060935.1 NC_000001.11 99.15 True translocation 201092354 201100844 189864 181341 NC_060927.1 NC_000001.11 97.96 True indel: indel (> 5bp) 201090953 201092353 191335 189935 NC_060927.1 NC_000001.11 98.43 True local misassembly 201072613 201088876 207652 191388 NC_060927.1 NC_000001.11 99.8 True translocation, scaffold gap is present 10449 50735 257667 297956 NC_060944.1 NC_000001.11 99.88 True translocation, scaffold gap is present 181848845 182035150 529657 347969 NC_060929.1 NC_000001.11 96.92 True translocation 200908440 200914780 535988 529658 NC_060927.1 NC_000001.11 99.32 True translocation, scaffold gap is present 12613 1558065 585989 2123120 NC_060925.1 NC_000001.11 97.39 True local misassembly 1558776 1582520 2123979 2147720 NC_060925.1 NC_000001.11 99.65 True indel: indel (> 5bp) 1582683 1647015 2147721 2212064 NC_060925.1 NC_000001.11 99.82 True local misassembly 1647474 1716373 2212065 2280958 NC_060925.1 NC_000001.11 99.88 True local misassembly 1718097 1725467 2282178 2289544 NC_060925.1 NC_000001.11 99.84 True indel: indel (> 5bp) 1725511 1745745 2289545 2309780 NC_060925.1 NC_000001.11 99.84 True indel: indel (> 5bp) 1745746 1761072 2309821 2325140 NC_060925.1 NC_000001.11 99.83 True local misassembly 1764423 1785245 2325141 2345974 NC_060925.1 NC_000001.11 99.93 True indel: indel (> 5bp) 1785246 1832303 2346001 2393034 NC_060925.1 NC_000001.11 99.82 True indel: indel (> 5bp) 1832346 1840655 2393035 2401341 NC_060925.1 NC_000001.11 99.82 True local misassembly 1840916 1875627 2401342 2436027 NC_060925.1 NC_000001.11 99.79 True local misassembly 1876089 1879931 2436547 2440390 NC_060925.1 NC_000001.11 99.82 True local misassembly 1881578 1891879 2440391 2450683 NC_060925.1 NC_000001.11 99.67 True indel: indel (> 5bp) 1891994 1900760 2450684 2459450 NC_060925.1 NC_000001.11 99.79 True indel: indel (> 5bp) 1900761 1924862 2459643 2483752 NC_060925.1 NC_000001.11 99.83 True indel: indel (> 5bp) 1924863 1963880 2483775 2522791 NC_060925.1 NC_000001.11 99.88 True local misassembly 1964436 2076388 2522792 2634742 NC_060925.1 NC_000001.11 99.92 True local misassembly 2076389 2093359 2635145 2652117 NC_060925.1 NC_000001.11 99.86 True indel: indel (> 5bp) 2093519 2096141 2652118 2654740 NC_060925.1 NC_000001.11 99.58 True local misassembly 2096440 2097496 2655279 2656335 NC_060925.1 NC_000001.11 99.34 True relocation, inconsistency = 96775 2194272 2195117 2656336 2657181 NC_060925.1 NC_000001.11 99.88 True local misassembly 2195125 2195701 2657749 2658326 NC_060925.1 NC_000001.11 96.89 True local misassembly 2198277 2200928 2660177 2662828 NC_060925.1 NC_000001.11 98.83 True local misassembly 2201686 2206106 2663024 2667444 NC_060925.1 NC_000001.11 98.94 True local misassembly 2206864 2207635 2667640 2668411 NC_060925.1 NC_000001.11 99.09 True indel: indel (> 5bp) 2207636 2209071 2668493 2669928 NC_060925.1 NC_000001.11 99.23 True local misassembly 2209072 2211821 2670491 2673250 NC_060925.1 NC_000001.11 99.2 True indel: indel (> 5bp) 2211822 2213654 2673291 2675123 NC_060925.1 NC_000001.11 99.51 True local misassembly 2214177 2216942 2675124 2677899 NC_060925.1 NC_000001.11 99.06 True local misassembly 2218347 2222590 2677900 2682142 NC_060925.1 NC_000001.11 99.67 True local misassembly 2231051 2232120 2687319 2688387 NC_060925.1 NC_000001.11 95.51 True indel: indel (> 5bp) 2232201 2233369 2688388 2689556 NC_060925.1 NC_000001.11 97.43 True local misassembly 2237642 3441412 2691948 3929502 NC_060925.1 NC_000001.11 97.59 True local misassembly 3441705 3576299 3929503 4064349 NC_060925.1 NC_000001.11 99.42 True local misassembly 3577189 5530901 4066183 6005077 NC_060925.1 NC_000001.11 98.95 True local misassembly 5531342 12498104 6005078 12954198 NC_060925.1 NC_000001.11 99.39 True relocation, scaffold gap is present, inconsistency = -27162 12521139 12622991 13004395 13104107 NC_060925.1 NC_000001.11 97.32 True local misassembly 12641413 16081350 13122522 16619297 NC_060925.1 NC_000001.11 96.77 True relocation, inconsistency = 165426 16246777 16282608 16619298 16655133 NC_060925.1 NC_000001.11 99.72 True relocation, inconsistency = 88092 16370701 16408046 16655134 16692443 NC_060925.1 NC_000001.11 99.67 True indel: indel (> 5bp) 16408047 16417029 16692465 16701435 NC_060925.1 NC_000001.11 99.5 True indel: indel (> 5bp) 16417068 16451678 16701436 16736078 NC_060925.1 NC_000001.11 99.52 True relocation, inconsistency = 7339 16459018 16467437 16736079 16744480 NC_060925.1 NC_000001.11 98.43 True relocation, inconsistency = 86400 16553838 16571069 16744481 16761737 NC_060925.1 NC_000001.11 98.52 True fake: scaffold gap size wrong estimation (local) 16659591 23737042 16849182 23899806 NC_060925.1 NC_000001.11 99.25 True local misassembly 23737291 26479525 23899811 26641555 NC_060925.1 NC_000001.11 99.53 True local misassembly 26484469 29394901 26646499 29552233 NC_060925.1 NC_000001.11 99.67 True fake: scaffold gap size wrong estimation (local) 29396109 32598313 29553836 32738495 NC_060925.1 NC_000001.11 99.23 True indel: indel (<= 5bp) 32598468 43463857 32738647 43593625 NC_060925.1 NC_000001.11 99.71 True fake: not a misassembly (possible transposable element) 43463860 43464433 43594215 43593642 NC_060925.1 NC_000001.11 100.0 True fake: not a misassembly (possible transposable element) 43464801 45585799 43594284 45710639 NC_060925.1 NC_000001.11 99.55 True local misassembly 45588110 92641913 45710952 92796716 NC_060925.1 NC_000001.11 99.59 True indel: indel (> 5bp) 92641982 103546849 92796840 103697983 NC_060925.1 NC_000001.11 99.72 True relocation, inconsistency = 188276 103735126 108343966 103697984 108310529 NC_060925.1 NC_000001.11 99.31 True relocation, inconsistency = -87537 108256430 108417231 108471557 108310530 NC_060925.1 NC_000001.11 99.68 True relocation, inconsistency = 87706 108504938 108516689 108471558 108483203 NC_060925.1 NC_000001.11 99.77 True local misassembly 108516787 120844385 108483674 120835527 NC_060925.1 NC_000001.11 99.39 True local misassembly 120845405 120898843 120836007 120889443 NC_060925.1 NC_000001.11 99.98 True indel: indel (> 5bp) 120898844 121134072 120889468 121124689 NC_060925.1 NC_000001.11 99.99 True indel: indel (> 5bp) 121134073 121628042 121124711 121618663 NC_060925.1 NC_000001.11 99.97 True local misassembly 121630177 121633002 121618664 121621488 NC_060925.1 NC_000001.11 99.15 True local misassembly 121635159 121637203 121621489 121623537 NC_060925.1 NC_000001.11 97.22 True local misassembly 121637472 121639061 121623538 121625127 NC_060925.1 NC_000001.11 97.74 True local misassembly 121642800 121655673 121625128 121638003 NC_060925.1 NC_000001.11 98.68 True local misassembly 121657543 121659410 121638004 121639872 NC_060925.1 NC_000001.11 98.29 True local misassembly 121661276 121665813 121639873 121644410 NC_060925.1 NC_000001.11 97.71 True local misassembly 121667680 121677274 121644411 121654004 NC_060925.1 NC_000001.11 98.75 True local misassembly 121681520 121687383 121654189 121660050 NC_060925.1 NC_000001.11 98.76 True local misassembly 121689247 121692137 121660051 121662940 NC_060925.1 NC_000001.11 98.55 True relocation, inconsistency = 9330 121701468 121724586 121662941 121686059 NC_060925.1 NC_000001.11 98.45 True relocation, inconsistency = 11199 121735786 121740169 121686060 121690443 NC_060925.1 NC_000001.11 99.06 True local misassembly 121742034 121774442 121690444 121722849 NC_060925.1 NC_000001.11 98.79 True local misassembly 121774780 121781650 121722850 121729721 NC_060925.1 NC_000001.11 98.76 True local misassembly 121783517 121799857 121729722 121746061 NC_060925.1 NC_000001.11 99.6 True local misassembly 121799858 121808660 121748100 121756899 NC_060925.1 NC_000001.11 99.76 True fake: scaffold gap size wrong estimation (local) 121808661 121809470 121759391 121760199 NC_060925.1 NC_000001.11 97.78 True local misassembly 121809471 121815863 121760540 121766937 NC_060925.1 NC_000001.11 99.62 True local misassembly 121816205 121817420 121766938 121768152 NC_060925.1 NC_000001.11 99.84 True fake: scaffold gap size wrong estimation (local) 121818379 121824288 121768443 121774352 NC_060925.1 NC_000001.11 99.86 True relocation, scaffold gap is present, inconsistency = -97633 121728789 121731054 121776486 121778748 NC_060925.1 NC_000001.11 96.56 True relocation, scaffold gap is present, inconsistency = -27515 121704048 121705882 121779257 121781090 NC_060925.1 NC_000001.11 99.62 True fake: scaffold gap size wrong estimation (local) 121706707 121721781 121781201 121796598 NC_060925.1 NC_000001.11 96.01 True fake: scaffold gap size wrong estimation (local) 121722472 121724662 121796699 121798889 NC_060925.1 NC_000001.11 97.4 True fake: scaffold gap size wrong estimation (local) 121724663 121729552 121799860 121804744 NC_060925.1 NC_000001.11 97.22 True fake: scaffold gap size wrong estimation (local) 121730090 121732297 121805104 121807305 NC_060925.1 NC_000001.11 96.29 True fake: scaffold gap size wrong estimation (local) 121732298 121734527 121807969 121810201 NC_060925.1 NC_000001.11 95.75 True relocation, scaffold gap is present, inconsistency = 21427 121708103 121710685 121812966 121810387 NC_060925.1 NC_000001.11 97.06 True fake: scaffold gap size wrong estimation (local) 121705974 121708102 121815624 121813496 NC_060925.1 NC_000001.11 99.86 True fake: scaffold gap size wrong estimation (local) 121697768 121705308 121823516 121815978 NC_060925.1 NC_000001.11 98.93 True relocation, scaffold gap is present, inconsistency = 63942 121631860 121633694 121823648 121825482 NC_060925.1 NC_000001.11 99.78 True fake: scaffold gap size wrong estimation (local) 121634173 121636803 121826590 121829220 NC_060925.1 NC_000001.11 99.54 True fake: scaffold gap size wrong estimation (local) 121637292 121639174 121830616 121832497 NC_060925.1 NC_000001.11 97.34 True local misassembly 121639175 121652219 121832766 121845796 NC_060925.1 NC_000001.11 99.0 True fake: scaffold gap size wrong estimation (local) 121652220 121657089 121845985 121850845 NC_060925.1 NC_000001.11 97.21 True relocation, scaffold gap is present, inconsistency = -25484 121657090 121668262 121876330 121887495 NC_060925.1 NC_000001.11 99.44 True local misassembly 121668263 121669756 121889362 121890855 NC_060925.1 NC_000001.11 100.0 True fake: scaffold gap size wrong estimation (local) 121669987 121672045 121891038 121893093 NC_060925.1 NC_000001.11 99.71 True fake: scaffold gap size wrong estimation (local) 121672046 121676098 121893841 121897893 NC_060925.1 NC_000001.11 96.35 True fake: scaffold gap size wrong estimation (local) 121676099 121677286 121898730 121899912 NC_060925.1 NC_000001.11 95.54 True local misassembly 121677618 121679838 121899913 121902131 NC_060925.1 NC_000001.11 95.36 True fake: scaffold gap size wrong estimation (local) 121679839 121688141 121902743 121911038 NC_060925.1 NC_000001.11 95.76 True fake: scaffold gap size wrong estimation (local) 121688334 121690807 121911583 121914056 NC_060925.1 NC_000001.11 95.84 True fake: scaffold gap size wrong estimation (local) 121691363 121700138 121914385 121923339 NC_060925.1 NC_000001.11 98.13 True fake: scaffold gap size wrong estimation (local) 121699227 121699992 121923602 121924367 NC_060925.1 NC_000001.11 97.91 True local misassembly 121699993 121701748 121924695 121926447 NC_060925.1 NC_000001.11 97.44 True fake: scaffold gap size wrong estimation (local) 121702106 121703874 121926862 121928630 NC_060925.1 NC_000001.11 97.51 True local misassembly 121705855 121707790 121928732 121930666 NC_060925.1 NC_000001.11 97.21 True fake: scaffold gap size wrong estimation (local) 121707964 121710239 121930791 121933065 NC_060925.1 NC_000001.11 95.61 True fake: scaffold gap size wrong estimation (local) 121710240 121714422 121936002 121940182 NC_060925.1 NC_000001.11 95.89 True fake: scaffold gap size wrong estimation (extensive) 121712429 121715200 121947507 121950278 NC_060925.1 NC_000001.11 95.13 True fake: scaffold gap size wrong estimation (local) 121715652 121717800 121950503 121952651 NC_060925.1 NC_000001.11 95.63 True fake: scaffold gap size wrong estimation (local) 121717801 121721781 121959372 121963355 NC_060925.1 NC_000001.11 95.93 True relocation, scaffold gap is present, inconsistency = -54239 121667904 121669987 121963717 121965801 NC_060925.1 NC_000001.11 97.94 True relocation, scaffold gap is present, inconsistency = 138336 121808650 121811302 121966128 121968784 NC_060925.1 NC_000001.11 97.22 True relocation, scaffold gap is present, inconsistency = 152730 121652511 121655783 121972191 121968921 NC_060925.1 NC_000001.11 97.71 True fake: scaffold gap size wrong estimation (local) 121650597 121652308 121974192 121972478 NC_060925.1 NC_000001.11 96.38 True relocation, scaffold gap is present, inconsistency = 28626 121619761 121621325 121974838 121976401 NC_060925.1 NC_000001.11 96.36 True relocation, scaffold gap is present, inconsistency = 102882 121774497 121788213 122040415 122026691 NC_060925.1 NC_000001.11 96.87 True local misassembly 121767404 121774160 122047172 122040416 NC_060925.1 NC_000001.11 96.34 True local misassembly 121758087 121767403 122056834 122047513 NC_060925.1 NC_000001.11 97.03 True fake: scaffold gap size wrong estimation (local) 121748249 121758025 122066754 122056977 NC_060925.1 NC_000001.11 97.08 True local misassembly 121731961 121748248 122084922 122068624 NC_060925.1 NC_000001.11 95.99 True indel: indel (> 5bp) 121719393 121731960 122097658 122085093 NC_060925.1 NC_000001.11 97.18 True local misassembly 121716716 121719392 122102204 122099525 NC_060925.1 NC_000001.11 97.24 True relocation, scaffold gap is present, inconsistency = -52781 121762315 121768574 122109389 122103127 NC_060925.1 NC_000001.11 96.55 True fake: scaffold gap size wrong estimation (local) 121748589 121762314 122125244 122111513 NC_060925.1 NC_000001.11 96.92 True fake: scaffold gap size wrong estimation (local) 121700248 121748420 122173931 122125748 NC_060925.1 NC_000001.11 96.54 True relocation, scaffold gap is present, inconsistency = -22596 121712468 121722471 122184311 122174304 NC_060925.1 NC_000001.11 96.45 True local misassembly 121705833 121711954 122190435 122184312 NC_060925.1 NC_000001.11 96.7 True indel: indel (> 5bp) 121677604 121705832 122218852 122190606 NC_060925.1 NC_000001.11 97.09 True local misassembly 121671593 121677274 122224538 122218853 NC_060925.1 NC_000001.11 97.17 True relocation, scaffold gap is present, inconsistency = -4896845 126406665 126562886 122387058 122230090 NC_060925.1 NC_000001.11 98.53 True relocation, inconsistency = -27994 126325253 126434244 122496500 122387473 NC_060925.1 NC_000001.11 97.41 True indel: indel (> 5bp) 126318633 126325077 122503147 122496702 NC_060925.1 NC_000001.11 98.62 True translocation, scaffold gap is present 28389759 28394824 122520837 122525904 NC_060943.1 NC_000001.11 95.3 True translocation 125989050 125989811 122526113 122526875 NC_060925.1 NC_000001.11 96.99 True translocation 49520911 49521790 122530616 122531496 NC_060929.1 NC_000001.11 96.14 True translocation 121840202 121840940 122542859 122543597 NC_060925.1 NC_000001.11 96.08 True translocation 28855377 28862102 122546218 122552947 NC_060943.1 NC_000001.11 95.37 True relocation, inconsistency = 143485 29005588 29006148 122552948 122553508 NC_060943.1 NC_000001.11 95.03 True translocation 49431861 49435355 122570024 122573519 NC_060929.1 NC_000001.11 95.68 True relocation, inconsistency = 102266 49543002 49545004 122578900 122580902 NC_060929.1 NC_000001.11 95.36 True relocation, inconsistency = -2378604 47172924 47174625 122587426 122589128 NC_060929.1 NC_000001.11 96.07 True translocation 123446832 123447969 122589406 122590543 NC_060925.1 NC_000001.11 96.05 True local misassembly 123453185 123454380 122595762 122596959 NC_060925.1 NC_000001.11 96.41 True relocation, inconsistency = -1475463 121996452 121997210 122614494 122615252 NC_060925.1 NC_000001.11 95.78 True translocation 29738266 29738964 122618991 122619689 NC_060943.1 NC_000001.11 99.0 True relocation, inconsistency = -3862663 25888065 25890102 122631453 122633493 NC_060943.1 NC_000001.11 96.0 True relocation, inconsistency = 47469 25937572 25940791 122633494 122636714 NC_060943.1 NC_000001.11 95.22 True translocation 49401745 49403359 122638138 122639752 NC_060929.1 NC_000001.11 96.16 True relocation, inconsistency = -119589 49293072 49295450 122649054 122651430 NC_060929.1 NC_000001.11 95.04 True relocation, inconsistency = 129768 49430877 49434102 122657089 122660315 NC_060929.1 NC_000001.11 95.63 True local misassembly 49434442 49436295 122660316 122662174 NC_060929.1 NC_000001.11 95.27 True translocation 123201444 123202231 122665253 122666040 NC_060925.1 NC_000001.11 96.57 True translocation 49415895 49418486 122666237 122668830 NC_060929.1 NC_000001.11 95.59 True translocation 27811094 27815456 122668831 122673199 NC_060943.1 NC_000001.11 95.06 True translocation 126285558 126286306 122673200 122673948 NC_060925.1 NC_000001.11 96.04 True relocation, inconsistency = -390065 125898394 125902191 122676101 122679903 NC_060925.1 NC_000001.11 95.42 True local misassembly 125902531 125903584 122679904 122680958 NC_060925.1 NC_000001.11 96.97 True translocation 48816685 48817674 122684325 122685315 NC_060929.1 NC_000001.11 96.17 True local misassembly 48817675 48819384 122685655 122687364 NC_060929.1 NC_000001.11 95.67 True local misassembly 48822429 48824194 122690414 122692182 NC_060929.1 NC_000001.11 96.33 True translocation 25934314 25938092 122692801 122696578 NC_060943.1 NC_000001.11 95.19 True relocation, inconsistency = 3303192 29248006 29250200 122703300 122705495 NC_060943.1 NC_000001.11 95.72 True translocation 126295291 126295847 122705717 122706273 NC_060925.1 NC_000001.11 95.87 True relocation, inconsistency = 2127460 124155133 124155852 122718970 122718252 NC_060925.1 NC_000001.11 97.01 True translocation 49400647 49402145 122718971 122720469 NC_060929.1 NC_000001.11 95.73 True local misassembly 49404040 49405235 122722364 122723559 NC_060929.1 NC_000001.11 97.51 True translocation 124047992 124049315 122723560 122724884 NC_060925.1 NC_000001.11 95.55 True translocation 25975445 25976969 122726103 122727627 NC_060943.1 NC_000001.11 96.26 True translocation 123850314 123851874 122729131 122730691 NC_060925.1 NC_000001.11 97.18 True local misassembly 123852215 123853806 122730692 122732283 NC_060925.1 NC_000001.11 96.92 True translocation 49432776 49435150 122733441 122735816 NC_060929.1 NC_000001.11 95.45 True relocation, inconsistency = -1958597 47485880 47489279 122745143 122748546 NC_060929.1 NC_000001.11 95.06 True relocation, inconsistency = -369378 47129766 47130647 122758411 122759291 NC_060929.1 NC_000001.11 96.16 True translocation 125926163 125929067 122759292 122762194 NC_060925.1 NC_000001.11 95.11 True relocation, inconsistency = 1085881 124835514 124839351 122766960 122763125 NC_060925.1 NC_000001.11 95.1 True translocation 25932877 25933914 122775665 122776704 NC_060943.1 NC_000001.11 95.29 True relocation, inconsistency = 150625 26092959 26093820 122785124 122785985 NC_060943.1 NC_000001.11 95.37 True translocation 124115197 124116275 122790770 122791847 NC_060925.1 NC_000001.11 96.66 True translocation 27337950 27341093 122797715 122800860 NC_060943.1 NC_000001.11 96.0 True translocation 123973554 123980803 122801417 122808664 NC_060925.1 NC_000001.11 95.56 True relocation, inconsistency = -10877 123978788 123980910 122817526 122819649 NC_060925.1 NC_000001.11 96.85 True relocation, inconsistency = -478248 123504143 123505806 122821130 122822797 NC_060925.1 NC_000001.11 95.62 True translocation 29669335 29670698 122829481 122830844 NC_060943.1 NC_000001.11 97.36 True relocation, inconsistency = -38747 29647068 29647917 122845961 122846810 NC_060943.1 NC_000001.11 95.33 True translocation 49407778 49409816 122846811 122848852 NC_060929.1 NC_000001.11 95.64 True local misassembly 49409817 49411472 122849193 122850848 NC_060929.1 NC_000001.11 95.53 True relocation, inconsistency = 142363 49553836 49554557 122850849 122851570 NC_060929.1 NC_000001.11 95.41 True local misassembly 49555238 49555921 122852932 122853616 NC_060929.1 NC_000001.11 96.79 True translocation 125396656 125399288 122857136 122854505 NC_060925.1 NC_000001.11 95.18 True translocation 47230614 47231733 122859015 122860134 NC_060929.1 NC_000001.11 97.23 True translocation 124122447 124124513 122865677 122867744 NC_060925.1 NC_000001.11 95.79 True translocation 48354630 48355995 122868565 122869932 NC_060929.1 NC_000001.11 95.69 True local misassembly 48355996 48357798 122870614 122872416 NC_060929.1 NC_000001.11 96.06 True translocation 29299181 29302055 122888460 122891336 NC_060943.1 NC_000001.11 96.0 True translocation 49494374 49495427 122897762 122898816 NC_060929.1 NC_000001.11 96.02 True local misassembly 49495428 49497081 122899157 122900812 NC_060929.1 NC_000001.11 95.11 True translocation 126272830 126274257 122910347 122911774 NC_060925.1 NC_000001.11 95.52 True relocation, inconsistency = -4215936 122060409 122064940 122913862 122918396 NC_060925.1 NC_000001.11 95.28 True relocation, inconsistency = 119014 122207184 122209090 122941626 122943536 NC_060925.1 NC_000001.11 96.7 True local misassembly 122209091 122212570 122943875 122947356 NC_060925.1 NC_000001.11 95.69 True relocation, inconsistency = 3923406 126136592 126137627 122947972 122949007 NC_060925.1 NC_000001.11 95.24 True relocation, inconsistency = -271963 125865665 125871027 122949008 122954368 NC_060925.1 NC_000001.11 95.14 True translocation 47629412 47632055 122954369 122957012 NC_060929.1 NC_000001.11 96.07 True relocation, inconsistency = 1791740 49424081 49425374 122957298 122958593 NC_060929.1 NC_000001.11 96.38 True translocation 124084384 124086083 122977895 122979599 NC_060925.1 NC_000001.11 95.19 True local misassembly 124086084 124087261 122979940 122981116 NC_060925.1 NC_000001.11 95.16 True translocation 49449996 49450577 122981535 122982116 NC_060929.1 NC_000001.11 97.94 True local misassembly 49450918 49452150 122982117 122983352 NC_060929.1 NC_000001.11 96.44 True relocation, inconsistency = 71694 49524988 49526688 122984496 122986195 NC_060929.1 NC_000001.11 95.24 True local misassembly 49526689 49527552 122986535 122987397 NC_060929.1 NC_000001.11 95.6 True relocation, inconsistency = -587392 48941336 48942194 122988573 122989432 NC_060929.1 NC_000001.11 95.93 True local misassembly 48942195 48942966 122989773 122990544 NC_060929.1 NC_000001.11 97.15 True local misassembly 48943306 48944793 122990545 122992032 NC_060929.1 NC_000001.11 96.17 True local misassembly 48946737 48948116 122993976 122995355 NC_060929.1 NC_000001.11 96.16 True translocation 29250600 29251493 123000644 123001541 NC_060943.1 NC_000001.11 95.88 True translocation 49044966 49048548 123005217 123008800 NC_060929.1 NC_000001.11 95.15 True translocation 25908795 25911473 123020476 123023155 NC_060943.1 NC_000001.11 95.78 True local misassembly 25911812 25913367 123023156 123024711 NC_060943.1 NC_000001.11 95.76 True translocation 47129768 47130773 123026977 123027978 NC_060929.1 NC_000001.11 97.12 True translocation 29250414 29252076 123028318 123029985 NC_060943.1 NC_000001.11 95.14 True local misassembly 29252416 29253772 123029986 123031342 NC_060943.1 NC_000001.11 96.02 True local misassembly 29254108 29254927 123031343 123032163 NC_060943.1 NC_000001.11 96.95 True translocation 47264279 47264960 123037833 123038512 NC_060929.1 NC_000001.11 95.04 True translocation 124736994 124739013 123040533 123038513 NC_060925.1 NC_000001.11 95.2 True translocation 49378569 49381986 123040555 123043980 NC_060929.1 NC_000001.11 95.1 True local misassembly 49381987 49383267 123044323 123045604 NC_060929.1 NC_000001.11 95.24 True translocation 29147981 29148631 123060831 123061480 NC_060943.1 NC_000001.11 95.85 True relocation, inconsistency = -3250500 25930401 25933416 123093750 123096766 NC_060943.1 NC_000001.11 95.13 True translocation 125191027 125193023 123132284 123130288 NC_060925.1 NC_000001.11 96.15 True translocation 29643671 29645465 123147967 123149757 NC_060943.1 NC_000001.11 95.82 True relocation, inconsistency = 11540 29674727 29676176 123167479 123168933 NC_060943.1 NC_000001.11 95.33 True local misassembly 29676517 29677464 123168934 123169882 NC_060943.1 NC_000001.11 95.89 True translocation 49510376 49511734 123179076 123180439 NC_060929.1 NC_000001.11 95.45 True translocation 123841804 123843031 123181422 123182652 NC_060925.1 NC_000001.11 95.04 True local misassembly 123843032 123843950 123182994 123183912 NC_060925.1 NC_000001.11 96.19 True relocation, inconsistency = 63561 123907620 123909947 123184021 123186350 NC_060925.1 NC_000001.11 96.22 True translocation 49451077 49451764 123189443 123190132 NC_060929.1 NC_000001.11 96.96 True local misassembly 49452104 49453594 123190133 123191625 NC_060929.1 NC_000001.11 95.58 True local misassembly 49453595 49454314 123192305 123193024 NC_060929.1 NC_000001.11 96.67 True relocation, inconsistency = -1768298 47687809 47688546 123194817 123195555 NC_060929.1 NC_000001.11 97.83 True local misassembly 47690055 47691829 123196386 123198161 NC_060929.1 NC_000001.11 95.89 True local misassembly 47696203 47698983 123202536 123205317 NC_060929.1 NC_000001.11 95.33 True translocation 25931898 25932780 123206924 123207806 NC_060943.1 NC_000001.11 95.83 True local misassembly 25930401 25931612 123207807 123209020 NC_060943.1 NC_000001.11 95.3 True local misassembly 25931953 25933488 123209021 123210556 NC_060943.1 NC_000001.11 95.25 True translocation 124877929 124878444 123220692 123220177 NC_060925.1 NC_000001.11 96.32 True indel: indel (> 5bp) 124876989 124877899 123221601 123220693 NC_060925.1 NC_000001.11 96.05 True translocation 47618920 47619598 123227828 123228506 NC_060929.1 NC_000001.11 97.2 True local misassembly 47619599 47620111 123228846 123229358 NC_060929.1 NC_000001.11 95.91 True translocation 25944709 25946225 123231594 123233109 NC_060943.1 NC_000001.11 95.65 True translocation 122932466 122933887 123240778 123242198 NC_060925.1 NC_000001.11 96.34 True relocation, inconsistency = 969065 123903904 123905388 123243150 123244632 NC_060925.1 NC_000001.11 96.9 True translocation 48790160 48791177 123245327 123246344 NC_060929.1 NC_000001.11 96.07 True local misassembly 48791518 48792198 123246345 123247026 NC_060929.1 NC_000001.11 96.19 True translocation 122032183 122033714 123250209 123251743 NC_060925.1 NC_000001.11 96.55 True local misassembly 122034055 122035250 123251744 123252936 NC_060925.1 NC_000001.11 95.65 True relocation, inconsistency = 215953 122253646 122254634 123255379 123256366 NC_060925.1 NC_000001.11 96.26 True local misassembly 122254975 122256638 123256367 123258026 NC_060925.1 NC_000001.11 95.31 True relocation, inconsistency = -118477 122146197 122147709 123266062 123267577 NC_060925.1 NC_000001.11 95.12 True translocation 49456496 49458034 123280305 123281844 NC_060929.1 NC_000001.11 95.91 True relocation, inconsistency = 74416 49533313 49534226 123282707 123283620 NC_060929.1 NC_000001.11 95.51 True translocation 123913447 123914410 123283784 123284747 NC_060925.1 NC_000001.11 96.68 True translocation 49430877 49432078 123304807 123306007 NC_060929.1 NC_000001.11 95.09 True local misassembly 49432079 49434614 123306348 123308882 NC_060929.1 NC_000001.11 96.14 True local misassembly 49434615 49436033 123309564 123310984 NC_060929.1 NC_000001.11 95.99 True local misassembly 49430879 49433095 123311607 123313820 NC_060929.1 NC_000001.11 96.66 True local misassembly 49433435 49434652 123313821 123315046 NC_060929.1 NC_000001.11 95.27 True relocation, inconsistency = -1247472 48187446 48189176 123315312 123317045 NC_060929.1 NC_000001.11 95.21 True local misassembly 48189517 48190924 123317046 123318455 NC_060929.1 NC_000001.11 95.18 True translocation 29695879 29697929 123323552 123325604 NC_060943.1 NC_000001.11 95.62 True translocation 49330877 49332688 123340711 123342525 NC_060929.1 NC_000001.11 95.48 True translocation 29675955 29678013 123347806 123349863 NC_060943.1 NC_000001.11 95.24 True translocation 126261786 126263333 123359319 123360868 NC_060925.1 NC_000001.11 95.23 True translocation 49295332 49296743 123361562 123362976 NC_060929.1 NC_000001.11 95.9 True translocation 123199264 123200825 123363465 123365024 NC_060925.1 NC_000001.11 95.58 True relocation, inconsistency = -427235 122773591 122774610 123365025 123366044 NC_060925.1 NC_000001.11 96.2 True relocation, inconsistency = 672316 123448426 123449423 123367544 123368541 NC_060925.1 NC_000001.11 95.69 True local misassembly 123449764 123451290 123368542 123370066 NC_060925.1 NC_000001.11 95.17 True translocation 48696061 48698097 123370067 123372103 NC_060929.1 NC_000001.11 95.14 True local misassembly 48698098 48699458 123372443 123373805 NC_060929.1 NC_000001.11 95.89 True local misassembly 48700132 48700993 123374478 123375339 NC_060929.1 NC_000001.11 96.52 True local misassembly 48701331 48702233 123375340 123376242 NC_060929.1 NC_000001.11 95.79 True relocation, inconsistency = -1308059 47394474 47395141 123376542 123377209 NC_060929.1 NC_000001.11 96.11 True local misassembly 47395142 47396021 123377550 123378429 NC_060929.1 NC_000001.11 96.84 True translocation 123987193 123988454 123378430 123379691 NC_060925.1 NC_000001.11 96.43 True local misassembly 123988455 123990555 123380032 123382132 NC_060925.1 NC_000001.11 95.24 True local misassembly 123990556 123992133 123382473 123384054 NC_060925.1 NC_000001.11 95.13 True relocation, inconsistency = -1646510 122346246 122347660 123384677 123386086 NC_060925.1 NC_000001.11 95.27 True translocation 49433083 49434272 123386533 123387722 NC_060929.1 NC_000001.11 96.22 True local misassembly 49434613 49436020 123387723 123389129 NC_060929.1 NC_000001.11 95.45 True translocation 126209304 126210688 123391774 123393159 NC_060925.1 NC_000001.11 96.39 True local misassembly 126210689 126212371 123393500 123395184 NC_060925.1 NC_000001.11 95.73 True translocation 47230973 47232024 123395185 123396236 NC_060929.1 NC_000001.11 97.35 True local misassembly 47232365 47233490 123396237 123397366 NC_060929.1 NC_000001.11 95.13 True translocation 29676562 29678628 123406518 123408585 NC_060943.1 NC_000001.11 95.31 True translocation 125091478 125092561 123410561 123409479 NC_060925.1 NC_000001.11 95.94 True relocation, inconsistency = 3093073 121976179 121977394 123431572 123432787 NC_060925.1 NC_000001.11 96.79 True relocation, inconsistency = 2559254 124545165 124546750 123442889 123441304 NC_060925.1 NC_000001.11 95.08 True local misassembly 124544422 124545164 123443972 123443230 NC_060925.1 NC_000001.11 96.5 True local misassembly 124543250 124544082 123444804 123443973 NC_060925.1 NC_000001.11 96.88 True translocation 47617397 47618328 123451622 123452553 NC_060929.1 NC_000001.11 96.89 True translocation 121922518 121923693 123462903 123464079 NC_060925.1 NC_000001.11 96.86 True relocation, inconsistency = 1099390 123029998 123030706 123470994 123471703 NC_060925.1 NC_000001.11 96.34 True translocation 26001827 26003879 123472049 123474102 NC_060943.1 NC_000001.11 95.42 True translocation 124045660 124049336 123474103 123477780 NC_060925.1 NC_000001.11 95.03 True relocation, inconsistency = 1929766 125980831 125982160 123479509 123480838 NC_060925.1 NC_000001.11 97.15 True indel: stretch of mismatches 125982538 125984099 123481216 123482777 NC_060925.1 NC_000001.11 95.39 True translocation 47501861 47502556 123494614 123495309 NC_060929.1 NC_000001.11 95.55 True translocation 124159352 124160039 123497194 123496507 NC_060925.1 NC_000001.11 95.06 True translocation 47613622 47614972 123500356 123501706 NC_060929.1 NC_000001.11 96.08 True translocation 29633275 29634716 123503758 123505203 NC_060943.1 NC_000001.11 95.16 True translocation 124249301 124250254 123507771 123506817 NC_060925.1 NC_000001.11 96.13 True translocation 29337225 29337814 123531133 123531722 NC_060943.1 NC_000001.11 97.46 True translocation 49036840 49038296 123548338 123549799 NC_060929.1 NC_000001.11 96.17 True relocation, inconsistency = -881943 48158132 48158909 123551578 123552355 NC_060929.1 NC_000001.11 95.12 True fake: not a misassembly (possible transposable element) 48787442 48788924 123553076 123554559 NC_060929.1 NC_000001.11 95.22 True fake: not a misassembly (possible transposable element) 48161839 48163514 123554946 123556623 NC_060929.1 NC_000001.11 95.71 True translocation 29648602 29649678 123592499 123593576 NC_060943.1 NC_000001.11 96.66 True translocation 48188184 48189215 123607480 123608513 NC_060929.1 NC_000001.11 96.71 True local misassembly 48189556 48190999 123608514 123609960 NC_060929.1 NC_000001.11 95.85 True translocation 29713456 29715991 123619661 123622195 NC_060943.1 NC_000001.11 95.74 True translocation 122267345 122270223 123625776 123628656 NC_060925.1 NC_000001.11 95.52 True translocation 49484891 49486249 123707397 123708755 NC_060929.1 NC_000001.11 95.73 True translocation 123712896 123714043 123712366 123713514 NC_060925.1 NC_000001.11 96.17 True translocation 49419022 49420051 123715250 123716277 NC_060929.1 NC_000001.11 96.12 True translocation 123911856 123913339 123716903 123718387 NC_060925.1 NC_000001.11 95.02 True local misassembly 123913340 123915045 123718728 123720431 NC_060925.1 NC_000001.11 96.42 True translocation 49424081 49425119 123720986 123722027 NC_060929.1 NC_000001.11 95.49 True local misassembly 49425460 49426127 123722028 123722695 NC_060929.1 NC_000001.11 97.01 True local misassembly 49426128 49427404 123723037 123724311 NC_060929.1 NC_000001.11 96.16 True translocation 25908833 25910576 123761609 123763354 NC_060943.1 NC_000001.11 96.11 True translocation 49427964 49429034 123770588 123771659 NC_060929.1 NC_000001.11 95.8 True translocation 25964197 25964905 123778233 123778941 NC_060943.1 NC_000001.11 95.77 True local misassembly 25968474 25969026 123782172 123782724 NC_060943.1 NC_000001.11 96.56 True translocation 48972258 48973925 123783363 123785030 NC_060929.1 NC_000001.11 95.14 True local misassembly 48973926 48974650 123785371 123786098 NC_060929.1 NC_000001.11 98.63 True local misassembly 48974991 48976314 123786099 123787423 NC_060929.1 NC_000001.11 95.55 True translocation 29689862 29690689 123802037 123802864 NC_060943.1 NC_000001.11 95.89 True translocation 124216918 124217754 123813118 123812282 NC_060925.1 NC_000001.11 95.58 True local misassembly 124205690 124207237 123824022 123822473 NC_060925.1 NC_000001.11 96.52 True relocation, inconsistency = -75758 124277358 124279828 123828112 123825642 NC_060925.1 NC_000001.11 96.68 True relocation, inconsistency = 2410955 121857474 121858338 123836177 123837043 NC_060925.1 NC_000001.11 97.12 True translocation 25952329 25954152 123837399 123839224 NC_060943.1 NC_000001.11 96.55 True relocation, inconsistency = 3676560 29633718 29634665 123842230 123843176 NC_060943.1 NC_000001.11 96.52 True local misassembly 29635005 29638106 123843177 123846280 NC_060943.1 NC_000001.11 95.43 True translocation 49530911 49532125 123848420 123849634 NC_060929.1 NC_000001.11 95.14 True relocation, inconsistency = -287072 49247433 49249159 123852014 123853741 NC_060929.1 NC_000001.11 96.88 True local misassembly 49249160 49250134 123854081 123855059 NC_060929.1 NC_000001.11 95.4 True local misassembly 49250474 49251178 123855060 123855765 NC_060929.1 NC_000001.11 95.47 True local misassembly 49251179 49252650 123856106 123857576 NC_060929.1 NC_000001.11 95.04 True translocation 122198008 122199210 123864209 123865413 NC_060925.1 NC_000001.11 97.43 True local misassembly 122199552 122200824 123865414 123866688 NC_060925.1 NC_000001.11 96.0 True translocation 48609761 48612816 123867306 123870365 NC_060929.1 NC_000001.11 95.42 True relocation, inconsistency = 745019 49361604 49363296 123874134 123875828 NC_060929.1 NC_000001.11 95.1 True local misassembly 49363637 49364622 123875829 123876814 NC_060929.1 NC_000001.11 96.15 True relocation, inconsistency = -1956591 47410767 47411784 123879550 123880567 NC_060929.1 NC_000001.11 96.27 True local misassembly 47412126 47413127 123880568 123881570 NC_060929.1 NC_000001.11 95.81 True relocation, inconsistency = -112499 47304726 47305459 123885668 123886401 NC_060929.1 NC_000001.11 95.37 True translocation 122273206 122274104 123890140 123891039 NC_060925.1 NC_000001.11 95.89 True relocation, inconsistency = 3088913 125365123 125366206 123894227 123893145 NC_060925.1 NC_000001.11 95.02 True relocation, inconsistency = 1910537 123445676 123446506 123902307 123903138 NC_060925.1 NC_000001.11 97.84 True relocation, inconsistency = 684522 124134441 124135110 123906870 123906200 NC_060925.1 NC_000001.11 95.11 True translocation 49418621 49420083 123906871 123908335 NC_060929.1 NC_000001.11 96.11 True local misassembly 49420855 49422043 123909106 123910293 NC_060929.1 NC_000001.11 95.71 True relocation, inconsistency = -2177127 47247475 47248349 123912852 123913727 NC_060929.1 NC_000001.11 96.69 True translocation 123748685 123751626 123917055 123919997 NC_060925.1 NC_000001.11 95.01 True translocation 29661509 29662826 123935441 123936757 NC_060943.1 NC_000001.11 96.21 True local misassembly 29663167 29664162 123936758 123937755 NC_060943.1 NC_000001.11 96.79 True translocation 48294496 48295174 123947003 123947681 NC_060929.1 NC_000001.11 96.76 True translocation 125976056 125978036 123979797 123981780 NC_060925.1 NC_000001.11 95.51 True local misassembly 125978372 125979711 123981781 123983124 NC_060925.1 NC_000001.11 96.58 True translocation 48160671 48162600 123984073 123985999 NC_060929.1 NC_000001.11 95.23 True translocation 124997691 124999154 123987462 123986000 NC_060925.1 NC_000001.11 96.82 True translocation 48880868 48882310 123997637 123999079 NC_060929.1 NC_000001.11 95.29 True local misassembly 48882651 48883255 123999080 123999687 NC_060929.1 NC_000001.11 96.55 True local misassembly 48883597 48884856 123999688 124000949 NC_060929.1 NC_000001.11 96.35 True local misassembly 48884907 48885620 124001679 124002392 NC_060929.1 NC_000001.11 96.64 True local misassembly 48885621 48886685 124002733 124003798 NC_060929.1 NC_000001.11 95.78 True translocation 28691417 28692009 124017906 124018497 NC_060943.1 NC_000001.11 96.63 True translocation 126286570 126287811 124030037 124031277 NC_060925.1 NC_000001.11 96.22 True local misassembly 126287812 126288951 124031619 124032761 NC_060925.1 NC_000001.11 96.24 True translocation 48628459 48629795 124041483 124042813 NC_060929.1 NC_000001.11 96.19 True translocation 29249915 29251493 124056632 124058216 NC_060943.1 NC_000001.11 95.65 True translocation 49456691 49458194 124058833 124060336 NC_060929.1 NC_000001.11 96.21 True translocation 123777614 123778290 124072767 124073443 NC_060925.1 NC_000001.11 98.82 True local misassembly 123778631 123779714 124073444 124074525 NC_060925.1 NC_000001.11 96.59 True relocation, inconsistency = 206988 123987200 123988720 124075023 124076544 NC_060925.1 NC_000001.11 95.99 True translocation 49322586 49323873 124109164 124110451 NC_060929.1 NC_000001.11 96.2 True fake: not a misassembly (possible transposable element) 47128060 47129758 124123350 124125053 NC_060929.1 NC_000001.11 95.83 True fake: not a misassembly (possible transposable element) 49362260 49363650 124147138 124148528 NC_060929.1 NC_000001.11 95.4 True relocation, inconsistency = -2209407 47157436 47158901 124151721 124153187 NC_060929.1 NC_000001.11 95.09 True translocation 122125804 122126855 124165650 124166696 NC_060925.1 NC_000001.11 95.34 True local misassembly 122126856 122128479 124167037 124168658 NC_060925.1 NC_000001.11 96.18 True translocation 47859598 47860324 124170170 124170896 NC_060929.1 NC_000001.11 96.15 True local misassembly 47866966 47867785 124177204 124178022 NC_060929.1 NC_000001.11 96.59 True relocation, inconsistency = 1500931 49369059 49373617 124178365 124182921 NC_060929.1 NC_000001.11 95.24 True local misassembly 49373957 49374955 124182922 124183921 NC_060929.1 NC_000001.11 95.3 True translocation 125886960 125889095 124185577 124187715 NC_060925.1 NC_000001.11 95.14 True translocation 47268373 47269676 124194689 124195993 NC_060929.1 NC_000001.11 95.56 True local misassembly 47270017 47271423 124195994 124197404 NC_060929.1 NC_000001.11 95.82 True relocation, inconsistency = -13256 47265640 47266319 124204877 124205556 NC_060929.1 NC_000001.11 96.47 True local misassembly 47266320 47269208 124205897 124208785 NC_060929.1 NC_000001.11 95.4 True local misassembly 47269548 47271482 124208786 124210721 NC_060929.1 NC_000001.11 95.4 True translocation 125978864 125982122 124221458 124224716 NC_060925.1 NC_000001.11 95.4 True relocation, inconsistency = 140185 126122308 126123129 124224717 124225536 NC_060925.1 NC_000001.11 95.88 True relocation, inconsistency = -2771521 123360353 123362006 124234281 124235935 NC_060925.1 NC_000001.11 96.32 True translocation 47371981 47372694 124237477 124238190 NC_060929.1 NC_000001.11 95.94 True local misassembly 47372695 47373542 124238530 124239377 NC_060929.1 NC_000001.11 97.64 True relocation, inconsistency = 1808499 49193589 49195448 124250925 124252780 NC_060929.1 NC_000001.11 95.59 True fake: not a misassembly (possible transposable element) 123201410 123202618 124255817 124257023 NC_060925.1 NC_000001.11 96.03 True fake: not a misassembly (possible transposable element) 49198181 49199562 124257720 124259102 NC_060929.1 NC_000001.11 95.52 True local misassembly 49201463 49203227 124261010 124262776 NC_060929.1 NC_000001.11 95.02 True translocation 126188112 126189609 124264719 124266213 NC_060925.1 NC_000001.11 96.73 True translocation 25961048 25963670 124267790 124270415 NC_060943.1 NC_000001.11 95.09 True translocation 49522958 49523631 124273023 124273696 NC_060929.1 NC_000001.11 98.52 True relocation, inconsistency = -1373168 48150801 48152410 124274034 124275640 NC_060929.1 NC_000001.11 95.47 True local misassembly 48152411 48153173 124275982 124276744 NC_060929.1 NC_000001.11 97.77 True local misassembly 48154197 48155373 124277090 124278268 NC_060929.1 NC_000001.11 96.27 True translocation 25937881 25938397 124282022 124282537 NC_060943.1 NC_000001.11 99.23 True translocation 47816772 47817832 124291325 124292387 NC_060929.1 NC_000001.11 97.18 True translocation 124054813 124055461 124296331 124296978 NC_060925.1 NC_000001.11 98.61 True local misassembly 124055462 124057175 124297319 124299031 NC_060925.1 NC_000001.11 95.27 True translocation 27296785 27297579 124299032 124299829 NC_060943.1 NC_000001.11 95.0 True translocation 47773667 47774750 124320612 124321699 NC_060929.1 NC_000001.11 96.51 True relocation, inconsistency = 1759820 49535260 49537368 124322389 124324499 NC_060929.1 NC_000001.11 95.17 True translocation 122562245 122563837 124327921 124329513 NC_060925.1 NC_000001.11 97.05 True relocation, inconsistency = -399387 122164451 122165380 124329514 124330445 NC_060925.1 NC_000001.11 96.14 True translocation 49511823 49512378 124333282 124333837 NC_060929.1 NC_000001.11 96.58 True local misassembly 49512379 49513268 124334178 124335068 NC_060929.1 NC_000001.11 97.42 True local misassembly 49513608 49514453 124335069 124335914 NC_060929.1 NC_000001.11 95.63 True relocation, inconsistency = -88675 49426121 49427527 124336257 124337661 NC_060929.1 NC_000001.11 95.31 True local misassembly 49427868 49429217 124337662 124339011 NC_060929.1 NC_000001.11 95.93 True relocation, inconsistency = -1589263 47849438 47851137 124348495 124350195 NC_060929.1 NC_000001.11 95.94 True translocation 123415770 123417673 124351732 124353637 NC_060925.1 NC_000001.11 96.27 True local misassembly 123418014 123419393 124353638 124355018 NC_060925.1 NC_000001.11 95.87 True translocation 49480813 49482161 124378076 124379425 NC_060929.1 NC_000001.11 95.26 True local misassembly 49482502 49483127 124379426 124380051 NC_060929.1 NC_000001.11 98.24 True translocation 29662838 29665370 124381104 124383636 NC_060943.1 NC_000001.11 95.03 True translocation 122389612 122391653 124385923 124387960 NC_060925.1 NC_000001.11 96.32 True relocation, inconsistency = 3522604 125914258 125917776 124387961 124391481 NC_060925.1 NC_000001.11 95.12 True relocation, inconsistency = -3894237 122023540 122025025 124391482 124392968 NC_060925.1 NC_000001.11 96.02 True relocation, inconsistency = 1500811 123528411 123529531 124395543 124396662 NC_060925.1 NC_000001.11 95.63 True translocation 29720349 29721419 124396663 124397732 NC_060943.1 NC_000001.11 96.4 True translocation 47306766 47308449 124402379 124404062 NC_060929.1 NC_000001.11 95.96 True local misassembly 47308450 47309851 124404403 124405806 NC_060929.1 NC_000001.11 96.3 True local misassembly 47311184 47312769 124406458 124408048 NC_060929.1 NC_000001.11 95.73 True translocation 25910578 25911543 124409911 124410876 NC_060943.1 NC_000001.11 96.79 True local misassembly 25911885 25913027 124410877 124412020 NC_060943.1 NC_000001.11 95.63 True translocation 49389094 49389774 124415636 124416317 NC_060929.1 NC_000001.11 95.16 True local misassembly 49389775 49391195 124416658 124418074 NC_060929.1 NC_000001.11 95.5 True translocation 29671672 29673017 124418657 124420002 NC_060943.1 NC_000001.11 96.88 True translocation 123735768 123738304 124441092 124443631 NC_060925.1 NC_000001.11 95.94 True translocation 47968011 47969027 124456426 124457443 NC_060929.1 NC_000001.11 95.87 True relocation, inconsistency = -449498 47519531 47520210 124457445 124458125 NC_060929.1 NC_000001.11 95.45 True local misassembly 47520211 47521172 124458465 124459425 NC_060929.1 NC_000001.11 95.84 True local misassembly 47521513 47522281 124459426 124460194 NC_060929.1 NC_000001.11 96.23 True relocation, inconsistency = 1820647 49343242 49345954 124460508 124463222 NC_060929.1 NC_000001.11 95.29 True translocation 124038773 124040369 124465397 124466991 NC_060925.1 NC_000001.11 95.87 True translocation 49243837 49245390 124475944 124477498 NC_060929.1 NC_000001.11 95.37 True relocation, inconsistency = 292513 49540282 49541704 124479877 124481300 NC_060929.1 NC_000001.11 95.51 True relocation, inconsistency = -106688 49436653 49438058 124482937 124484343 NC_060929.1 NC_000001.11 96.02 True local misassembly 49438399 49439368 124484344 124485314 NC_060929.1 NC_000001.11 95.98 True local misassembly 49442879 49443444 124489164 124489731 NC_060929.1 NC_000001.11 97.54 True local misassembly 49443445 49444150 124490071 124490775 NC_060929.1 NC_000001.11 97.03 True local misassembly 49444489 49445772 124490776 124492059 NC_060929.1 NC_000001.11 96.34 True translocation 29657735 29659179 124492076 124493520 NC_060943.1 NC_000001.11 95.16 True local misassembly 29659520 29661272 124493521 124495273 NC_060943.1 NC_000001.11 95.15 True translocation 121800820 121801785 124495516 124496482 NC_060925.1 NC_000001.11 95.55 True relocation, inconsistency = 4458463 126261687 126263254 124497921 124499493 NC_060925.1 NC_000001.11 95.61 True relocation, inconsistency = 1817292 124443473 124444394 124500409 124499494 NC_060925.1 NC_000001.11 95.68 True local misassembly 124436418 124437874 124503724 124502267 NC_060925.1 NC_000001.11 97.19 True local misassembly 124435061 124436077 124504742 124503725 NC_060925.1 NC_000001.11 95.68 True translocation 49253884 49255423 124505361 124506900 NC_060929.1 NC_000001.11 96.95 True fake: not a misassembly (possible transposable element) 49576952 49577728 124507706 124508482 NC_060929.1 NC_000001.11 95.37 True fake: not a misassembly (possible transposable element) 49259326 49260166 124510806 124511646 NC_060929.1 NC_000001.11 96.43 True relocation, inconsistency = 320725 49585148 49586905 124515903 124517661 NC_060929.1 NC_000001.11 95.96 True translocation 125478572 125480195 124523496 124521872 NC_060925.1 NC_000001.11 95.02 True translocation 49132624 49136016 124524051 124527443 NC_060929.1 NC_000001.11 95.7 True relocation, inconsistency = -444383 48723558 48724430 124559368 124560241 NC_060929.1 NC_000001.11 95.65 True local misassembly 48724768 48725386 124560242 124560861 NC_060929.1 NC_000001.11 98.23 True relocation, inconsistency = 666860 49415931 49417350 124584546 124585966 NC_060929.1 NC_000001.11 96.69 True local misassembly 49417690 49418791 124585967 124587068 NC_060929.1 NC_000001.11 96.1 True local misassembly 49419132 49419784 124587069 124587723 NC_060929.1 NC_000001.11 97.4 True translocation 122033905 122035155 124591833 124593085 NC_060925.1 NC_000001.11 95.53 True local misassembly 122047009 122049286 124605202 124607479 NC_060925.1 NC_000001.11 96.27 True translocation 29633647 29634760 124621594 124622708 NC_060943.1 NC_000001.11 95.96 True translocation 49502222 49503239 124628392 124629409 NC_060929.1 NC_000001.11 96.37 True relocation, inconsistency = -93443 49422723 49424461 124642336 124644074 NC_060929.1 NC_000001.11 95.46 True translocation 26166526 26167959 124646376 124647811 NC_060943.1 NC_000001.11 95.75 True translocation 49214223 49215873 124652617 124654269 NC_060929.1 NC_000001.11 95.95 True relocation, inconsistency = -1881200 47336024 47336672 124655620 124656269 NC_060929.1 NC_000001.11 96.92 True local misassembly 47336673 47337690 124656610 124657628 NC_060929.1 NC_000001.11 95.98 True local misassembly 47338031 47338875 124657629 124658473 NC_060929.1 NC_000001.11 97.63 True local misassembly 47338876 47340268 124658813 124660202 NC_060929.1 NC_000001.11 95.41 True translocation 123442957 123443974 124665620 124666637 NC_060925.1 NC_000001.11 96.27 True local misassembly 123444315 123444874 124666638 124667197 NC_060925.1 NC_000001.11 97.14 True relocation, inconsistency = -1312051 122179123 122180905 124713497 124715278 NC_060925.1 NC_000001.11 95.34 True local misassembly 122180906 122182688 124715619 124717399 NC_060925.1 NC_000001.11 95.34 True relocation, inconsistency = 10544 122195449 122197145 124719616 124721315 NC_060925.1 NC_000001.11 95.47 True relocation, inconsistency = 1248825 123448593 123450067 124723938 124725414 NC_060925.1 NC_000001.11 95.19 True translocation 47324439 47325182 124727993 124728736 NC_060929.1 NC_000001.11 96.77 True translocation 29662202 29663036 124752130 124752964 NC_060943.1 NC_000001.11 97.01 True local misassembly 29663377 29665226 124752965 124754814 NC_060943.1 NC_000001.11 95.89 True translocation 49592596 49593317 124754815 124755536 NC_060929.1 NC_000001.11 96.47 True relocation, inconsistency = -281658 49321673 49322536 124765550 124766413 NC_060929.1 NC_000001.11 95.95 True local misassembly 49322537 49323996 124766753 124768213 NC_060929.1 NC_000001.11 95.55 True translocation 124043612 124044276 124770686 124771349 NC_060925.1 NC_000001.11 96.24 True local misassembly 124044277 124045279 124771690 124772691 NC_060925.1 NC_000001.11 96.01 True local misassembly 124045619 124049124 124772692 124776193 NC_060925.1 NC_000001.11 95.27 True translocation 29656034 29657832 124779944 124781745 NC_060943.1 NC_000001.11 95.67 True translocation 47223505 47224017 124782698 124783210 NC_060929.1 NC_000001.11 97.08 True translocation, scaffold gap is present 126638494 126641690 124825522 124822322 NC_060925.1 NC_000001.11 95.74 True relocation, inconsistency = -62721 126647812 126701214 124879205 124825523 NC_060925.1 NC_000001.11 95.82 True relocation, scaffold gap is present, inconsistency = -61960 126692881 126737994 124932832 124977944 NC_060925.1 NC_000001.11 99.85 True fake: scaffold gap size wrong estimation (local) 126738218 126772778 124978327 125013058 NC_060925.1 NC_000001.11 99.46 True fake: scaffold gap size wrong estimation (local) 126773169 126891154 125013226 125130246 NC_060925.1 NC_000001.11 99.09 True fake: scaffold gap size wrong estimation (local) 126893020 126929109 125131848 125167953 NC_060925.1 NC_000001.11 99.9 True local misassembly 126929575 126931941 125167954 125170320 NC_060925.1 NC_000001.11 98.77 True local misassembly 126933642 126934670 125170321 125171349 NC_060925.1 NC_000001.11 99.81 True fake: scaffold gap size wrong estimation (local) 126934713 126935993 125174343 125175628 NC_060925.1 NC_000001.11 98.83 True local misassembly 126937031 126940939 125175629 125179561 NC_060925.1 NC_000001.11 98.02 True local misassembly 126940940 126941596 125179991 125180647 NC_060925.1 NC_000001.11 96.65 True indel: indel (> 5bp) 126941646 126942320 125180648 125181323 NC_060925.1 NC_000001.11 95.86 True indel: indel (> 5bp) 126942347 126943642 125181324 125182621 NC_060925.1 NC_000001.11 96.84 True local misassembly 126946677 126947728 125183338 125184388 NC_060925.1 NC_000001.11 99.14 True relocation, scaffold gap is present, inconsistency = -2860407 142087527 142091347 143184594 143188415 NC_060925.1 NC_000001.11 97.41 True fake: not a misassembly (possible transposable element) 142074506 142078515 143190773 143194778 NC_060925.1 NC_000001.11 97.93 True fake: not a misassembly (possible transposable element) 142101320 142103077 143200485 143202242 NC_060925.1 NC_000001.11 99.54 True relocation, inconsistency = 123807 142228594 142230624 143205982 143203952 NC_060925.1 NC_000001.11 98.47 True local misassembly 142222787 142225415 143211317 143208688 NC_060925.1 NC_000001.11 99.77 True relocation, inconsistency = 134274 142079836 142088325 143211505 143219994 NC_060925.1 NC_000001.11 98.15 True local misassembly 142089163 142091882 143219995 143222713 NC_060925.1 NC_000001.11 96.4 True fake: not a misassembly (possible transposable element) 142236598 142239994 143223168 143226572 NC_060925.1 NC_000001.11 98.62 True fake: not a misassembly (possible transposable element) 142096325 142097365 143227014 143228054 NC_060925.1 NC_000001.11 97.12 True local misassembly 142097834 142099188 143228055 143229405 NC_060925.1 NC_000001.11 96.53 True local misassembly 142102255 142102813 143233924 143234482 NC_060925.1 NC_000001.11 95.89 True local misassembly 142103926 142105719 143235154 143236948 NC_060925.1 NC_000001.11 98.83 True indel: indel (> 5bp) 142105968 142107132 143237103 143238267 NC_060925.1 NC_000001.11 96.31 True local misassembly 142109384 142113111 143238282 143242010 NC_060925.1 NC_000001.11 98.77 True relocation, inconsistency = 116454 142229566 142230452 143242011 143242897 NC_060925.1 NC_000001.11 99.89 True relocation, inconsistency = 15154 142212950 142214238 143244360 143243071 NC_060925.1 NC_000001.11 95.74 True indel: indel (> 5bp) 142211979 142212799 143245181 143244361 NC_060925.1 NC_000001.11 97.56 True local misassembly 142209851 142211365 143246966 143245452 NC_060925.1 NC_000001.11 99.14 True relocation, inconsistency = 10197 142195269 142196000 143251351 143250620 NC_060925.1 NC_000001.11 95.77 True relocation, inconsistency = 146778 142042335 142044957 143257498 143254885 NC_060925.1 NC_000001.11 97.06 True relocation, inconsistency = -196089 142236059 142238341 143259863 143257581 NC_060925.1 NC_000001.11 98.34 True relocation, inconsistency = 19141 142213137 142216887 143259894 143263594 NC_060925.1 NC_000001.11 95.76 True relocation, inconsistency = -45982 142170906 142172138 143263595 143264826 NC_060925.1 NC_000001.11 99.51 True relocation, inconsistency = -35780 142136665 142138965 143265133 143267434 NC_060925.1 NC_000001.11 98.77 True relocation, inconsistency = 90956 142229922 142276616 143267435 143311841 NC_060925.1 NC_000001.11 95.01 True relocation, inconsistency = 105317 142382402 143148955 143312310 144077058 NC_060925.1 NC_000001.11 99.5 True local misassembly 143149830 143174532 144078008 144102709 NC_060925.1 NC_000001.11 99.91 True relocation, inconsistency = 23273 143197874 143198999 144102778 144103903 NC_060925.1 NC_000001.11 100.0 True local misassembly 143200945 143202219 144103904 144105178 NC_060925.1 NC_000001.11 100.0 True local misassembly 143203555 143235971 144105179 144137596 NC_060925.1 NC_000001.11 99.92 True local misassembly 143236516 143237621 144137840 144138958 NC_060925.1 NC_000001.11 98.3 True local misassembly 143238542 143239626 144138959 144140041 NC_060925.1 NC_000001.11 98.25 True relocation, inconsistency = -687670 143498586 143926197 144568032 144140056 NC_060925.1 NC_000001.11 95.25 True relocation, inconsistency = -278407 143647791 145181161 144568033 146064276 NC_060925.1 NC_000001.11 95.29 True relocation, inconsistency = 671384 145852546 148680953 148935345 146064277 NC_060925.1 NC_000001.11 96.67 True relocation, inconsistency = 161983 145602145 145690562 148935346 149023772 NC_060925.1 NC_000001.11 99.87 True local misassembly 145690843 145725936 149023773 149058873 NC_060925.1 NC_000001.11 99.82 True local misassembly 145725937 145736597 149062042 149072696 NC_060925.1 NC_000001.11 99.73 True local misassembly 145736598 145738369 149078986 149080757 NC_060925.1 NC_000001.11 99.89 True indel: indel (> 5bp) 145738402 146008386 149080758 149350736 NC_060925.1 NC_000001.11 99.82 True relocation, inconsistency = 2471256 148479643 174585177 149350737 175231433 NC_060925.1 NC_000001.11 98.82 True local misassembly 174585793 180429442 175231782 181074232 NC_060925.1 NC_000001.11 99.74 True local misassembly 180429687 186850210 181074953 187495696 NC_060925.1 NC_000001.11 99.56 True local misassembly 186850460 204473862 187497598 205209504 NC_060925.1 NC_000001.11 99.13 True indel: indel (> 5bp) 204473944 222797646 205209666 223558935 NC_060925.1 NC_000001.11 99.41 True relocation, scaffold gap is present, inconsistency = -49166 222798481 227746648 223608936 228558154 NC_060925.1 NC_000001.11 99.74 True fake: scaffold gap size wrong estimation (local) 227798583 227801191 228608390 228611009 NC_060925.1 NC_000001.11 99.08 True relocation, inconsistency = 49196 227850388 227852627 228611010 228613248 NC_060925.1 NC_000001.11 99.33 True relocation, inconsistency = 69388 227922016 227955350 228613249 228646524 NC_060925.1 NC_000001.11 99.07 True relocation, inconsistency = 69404 228024755 228057293 228646525 228679058 NC_060925.1 NC_000001.11 99.88 True local misassembly 228057294 228202074 228679395 228824171 NC_060925.1 NC_000001.11 99.88 True local misassembly 228202410 228207700 228824172 228829466 NC_060925.1 NC_000001.11 99.66 True indel: indel (> 5bp) 228207701 228225026 228829499 228846825 NC_060925.1 NC_000001.11 99.81 True local misassembly 228225451 228527917 228846826 229149304 NC_060925.1 NC_000001.11 99.86 True indel: indel (> 5bp) 228527942 228566834 229149305 229188199 NC_060925.1 NC_000001.11 99.8 True indel: indel (> 5bp) 228566859 228803824 229188200 229425108 NC_060925.1 NC_000001.11 99.88 True indel: indel (> 5bp) 228803825 228814167 229425132 229435461 NC_060925.1 NC_000001.11 99.67 True indel: indel (> 5bp) 228814168 228851425 229435484 229472707 NC_060925.1 NC_000001.11 99.73 True indel: indel (> 5bp) 228851462 228957168 229472708 229578417 NC_060925.1 NC_000001.11 99.83 True indel: indel (> 5bp) 228957193 228965872 229578418 229587094 NC_060925.1 NC_000001.11 99.79 True indel: indel (> 5bp) 228966023 229007141 229587095 229628191 NC_060925.1 NC_000001.11 99.77 True indel: indel (> 5bp) 229007174 229249893 229628192 229870918 NC_060925.1 NC_000001.11 99.92 True local misassembly 229250192 229351299 229870919 229972021 NC_060925.1 NC_000001.11 99.99 True local misassembly 229351548 229417753 229972022 230038226 NC_060925.1 NC_000001.11 99.98 True indel: indel (> 5bp) 229417782 229490841 230038227 230111246 NC_060925.1 NC_000001.11 99.78 True indel: indel (> 5bp) 229490842 229655554 230111269 230275958 NC_060925.1 NC_000001.11 99.88 True indel: indel (> 5bp) 229655555 229671404 230276038 230291875 NC_060925.1 NC_000001.11 99.72 True indel: indel (> 5bp) 229671405 229671965 230291906 230292466 NC_060925.1 NC_000001.11 99.64 True indel: indel (> 5bp) 229671966 229695379 230292502 230315917 NC_060925.1 NC_000001.11 99.82 True indel: indel (> 5bp) 229695380 229711464 230315958 230332040 NC_060925.1 NC_000001.11 99.87 True local misassembly 229712512 229715830 230332041 230335356 NC_060925.1 NC_000001.11 99.7 True indel: indel (> 5bp) 229716206 236814207 230335784 237402806 NC_060925.1 NC_000001.11 99.23 True indel: stretch of mismatches 236814306 246245551 237402905 246818008 NC_060925.1 NC_000001.11 99.35 True local misassembly 246250722 247320003 246819349 247888190 NC_060925.1 NC_000001.11 98.46 True local misassembly 247319990 247963969 247894337 248519229 NC_060925.1 NC_000001.11 96.18 True local misassembly 247976034 248114714 248537337 248676366 NC_060925.1 NC_000001.11 99.16 True indel: stretch of mismatches 248114715 248384813 248676367 248946232 NC_060925.1 NC_000001.11 99.58 True CONTIG NC_000001.11 248956422 misassembled 127758001 127933039 175055 1 NC_060925.1 NT_187361.1 99.81 True CONTIG NT_187361.1 175055 correct 127727969 127760000 32032 1 NC_060925.1 NT_187362.1 100.0 True CONTIG NT_187362.1 32032 correct 4617502 4623493 5973 1 NC_060938.1 NT_187363.1 98.51 True indel: indel (> 5bp) 4605834 4617475 17643 5974 NC_060938.1 NT_187363.1 98.49 True indel: indel (> 5bp) 4581748 4605833 41785 17694 NC_060938.1 NT_187363.1 98.41 True indel: indel (> 5bp) 4578841 4581522 44585 41904 NC_060938.1 NT_187363.1 98.4 True local misassembly 4577176 4578203 45965 44943 NC_060938.1 NT_187363.1 98.05 True local misassembly 4569687 4575612 51897 45966 NC_060938.1 NT_187363.1 98.21 True indel: indel (> 5bp) 4567128 4569686 54481 51925 NC_060938.1 NT_187363.1 98.67 True indel: indel (> 5bp) 4563283 4567088 58291 54482 NC_060938.1 NT_187363.1 98.56 True indel: indel (> 5bp) 4550056 4563190 71405 58292 NC_060938.1 NT_187363.1 98.15 True indel: indel (> 5bp) 4549314 4549863 71955 71406 NC_060938.1 NT_187363.1 98.73 True indel: indel (> 5bp) 4546737 4549313 74679 72100 NC_060938.1 NT_187363.1 98.64 True indel: indel (> 5bp) 4545675 4546588 75593 74680 NC_060938.1 NT_187363.1 98.58 True indel: indel (> 5bp) 4544690 4545674 76723 75738 NC_060938.1 NT_187363.1 98.58 True local misassembly 4543740 4544689 78190 77241 NC_060938.1 NT_187363.1 98.21 True indel: stretch of mismatches 4541310 4543433 80640 78497 NC_060938.1 NT_187363.1 97.9 True local misassembly 4538764 4540693 82570 80641 NC_060938.1 NT_187363.1 98.91 True indel: indel (> 5bp) 4536024 4538763 85357 82619 NC_060938.1 NT_187363.1 98.8 True indel: indel (> 5bp) 4533282 4536023 88142 85406 NC_060938.1 NT_187363.1 98.54 True indel: indel (> 5bp) 4527791 4533137 93490 88143 NC_060938.1 NT_187363.1 98.47 True indel: indel (> 5bp) 4527076 4527742 94157 93491 NC_060938.1 NT_187363.1 98.8 True indel: stretch of mismatches 4516959 4526625 104273 94608 NC_060938.1 NT_187363.1 98.67 True indel: indel (> 5bp) 4509497 4516934 111708 104274 NC_060938.1 NT_187363.1 98.33 True indel: indel (> 5bp) 4493602 4509496 127682 111764 NC_060938.1 NT_187363.1 98.57 True CONTIG NT_187363.1 127682 correct 129605953 129607284 1395 64 NC_060925.1 NT_187364.1 99.02 True indel: indel (> 5bp) 129605397 129605952 1977 1422 NC_060925.1 NT_187364.1 97.84 True indel: indel (> 5bp) 129604375 129605373 2976 1978 NC_060925.1 NT_187364.1 97.84 True relocation, inconsistency = 2603504 126997384 127000870 2977 6461 NC_060925.1 NT_187364.1 98.05 True indel: indel (> 5bp) 127000871 127004080 6488 9693 NC_060925.1 NT_187364.1 97.82 True local misassembly 127004658 127005580 9694 10606 NC_060925.1 NT_187364.1 95.88 True indel: indel (> 5bp) 127005630 127009033 10607 14007 NC_060925.1 NT_187364.1 97.39 True indel: indel (> 5bp) 127009060 127009687 14008 14633 NC_060925.1 NT_187364.1 96.97 True local misassembly 127010084 127013012 14726 17651 NC_060925.1 NT_187364.1 97.83 True relocation, inconsistency = 1767891 128780904 128830097 17652 66860 NC_060925.1 NT_187364.1 99.82 True CONTIG NT_187364.1 66860 misassembled 4621493 4661798 1 40176 NC_060938.1 NT_187365.1 98.13 True CONTIG NT_187365.1 40176 correct 16636758 16660541 23801 1 NC_060925.1 NT_187366.1 99.06 True local misassembly 16612046 16630455 42210 23802 NC_060925.1 NT_187366.1 99.15 True CONTIG NT_187366.1 42210 correct 142278078 142281575 1 3502 NC_060925.1 NT_187367.1 99.54 True indel: indel (> 5bp) 142281888 142282726 3699 4556 NC_060925.1 NT_187367.1 96.85 True indel: indel (> 5bp) 142283373 142333897 5051 54797 NC_060925.1 NT_187367.1 97.09 True local misassembly 142341922 142342888 55945 56911 NC_060925.1 NT_187367.1 99.28 True local misassembly 142351066 142381699 59578 90208 NC_060925.1 NT_187367.1 99.78 True local misassembly 142383782 142386134 90577 92949 NC_060925.1 NT_187367.1 97.13 True local misassembly 142386859 142387384 92950 93479 NC_060925.1 NT_187367.1 98.3 True indel: indel (> 5bp) 142387408 142398944 93480 105037 NC_060925.1 NT_187367.1 99.12 True local misassembly 142399613 142400197 105739 106322 NC_060925.1 NT_187367.1 98.97 True indel: indel (> 5bp) 142400198 142433056 106346 139212 NC_060925.1 NT_187367.1 99.52 True local misassembly 142433827 142460408 139213 165795 NC_060925.1 NT_187367.1 99.65 True indel: indel (> 5bp) 142460437 142470682 165796 176043 NC_060925.1 NT_187367.1 99.71 True CONTIG NT_187367.1 176043 correct 16444733 16485481 40745 1 NC_060925.1 NT_187368.1 99.96 True CONTIG NT_187368.1 40745 correct 145169226 145179117 9894 23 NC_060925.1 NT_187369.1 96.95 True relocation, inconsistency = 128770550 16396441 16398674 9896 12129 NC_060925.1 NT_187369.1 98.34 True local misassembly 16401879 16417000 12130 27237 NC_060925.1 NT_187369.1 99.3 True indel: indel (> 5bp) 16417001 16431434 27276 41717 NC_060925.1 NT_187369.1 99.25 True CONTIG NT_187369.1 41717 misassembled 3350 1056170 10325 1056278 NC_060926.1 NC_000002.12 98.1 True indel: indel (> 5bp) 1056346 1220627 1056324 1221504 NC_060926.1 NC_000002.12 97.09 True local misassembly 1221357 1533771 1221754 1529641 NC_060926.1 NC_000002.12 95.74 True local misassembly 1534767 1535384 1529642 1530287 NC_060926.1 NC_000002.12 95.34 True local misassembly 1540807 16174341 1535919 16145119 NC_060926.1 NC_000002.12 99.35 True fake: scaffold gap size wrong estimation (local) 16177094 18327463 16146120 18295698 NC_060926.1 NC_000002.12 99.76 True indel: indel (<= 5bp) 18327574 29874464 18295804 29830942 NC_060926.1 NC_000002.12 99.67 True local misassembly 29875285 32915474 29831310 32866714 NC_060926.1 NC_000002.12 99.69 True fake: scaffold gap size wrong estimation (local) 32916033 70445930 32868131 70434172 NC_060926.1 NC_000002.12 99.55 True local misassembly 70446023 87413539 70435324 87405887 NC_060926.1 NC_000002.12 99.67 True local misassembly 87413938 87415381 87406433 87407875 NC_060926.1 NC_000002.12 99.86 True indel: indel (> 5bp) 87415539 87416210 87407876 87408547 NC_060926.1 NC_000002.12 99.7 True local misassembly 87419422 87419980 87409656 87410214 NC_060926.1 NC_000002.12 98.75 True local misassembly 87422098 87422937 87411907 87412746 NC_060926.1 NC_000002.12 99.76 True local misassembly 87424799 87426847 87414042 87416094 NC_060926.1 NC_000002.12 99.51 True indel: indel (> 5bp) 87427044 87427907 87416095 87416972 NC_060926.1 NC_000002.12 97.61 True local misassembly 87427908 87430876 87417662 87420635 NC_060926.1 NC_000002.12 99.29 True local misassembly 87434507 87435530 87422954 87423977 NC_060926.1 NC_000002.12 99.9 True local misassembly 87438231 89340016 87426931 89330679 NC_060926.1 NC_000002.12 99.57 True relocation, scaffold gap is present, inconsistency = 552854 90092871 90248114 89530680 89685784 NC_060926.1 NC_000002.12 99.65 True relocation, scaffold gap is present, inconsistency = -10542 90305802 90368445 89754014 89815309 NC_060926.1 NC_000002.12 97.35 True local misassembly 90371990 90388064 89817769 89833868 NC_060926.1 NC_000002.12 99.31 True indel: indel (> 5bp) 90388105 90390238 89833869 89836002 NC_060926.1 NC_000002.12 99.63 True indel: indel (> 5bp) 90390294 90391023 89836003 89836742 NC_060926.1 NC_000002.12 95.95 True local misassembly 90391466 90393292 89837335 89839116 NC_060926.1 NC_000002.12 97.26 True indel: indel (> 5bp) 90393328 90394924 89839117 89840733 NC_060926.1 NC_000002.12 98.33 True local misassembly 90396000 90473445 89840734 89918182 NC_060926.1 NC_000002.12 99.96 True local misassembly 90473712 90844307 89918183 90288748 NC_060926.1 NC_000002.12 99.97 True relocation, inconsistency = 54644 90899253 90907724 90289050 90297521 NC_060926.1 NC_000002.12 99.98 True local misassembly 90908191 90934767 90297522 90324095 NC_060926.1 NC_000002.12 99.96 True indel: indel (> 5bp) 90934794 90935992 90324096 90325307 NC_060926.1 NC_000002.12 98.6 True indel: indel (> 5bp) 90936142 90936819 90325475 90326147 NC_060926.1 NC_000002.12 99.86 True relocation, inconsistency = 650590 91587410 91664102 90402511 90326148 NC_060926.1 NC_000002.12 98.75 True relocation, scaffold gap is present, inconsistency = 727531 89749468 89859878 91510148 91402512 NC_060926.1 NC_000002.12 96.89 True relocation, inconsistency = 93523 89953596 89954539 91510343 91511286 NC_060926.1 NC_000002.12 99.47 True local misassembly 89955811 89956426 91511287 91511885 NC_060926.1 NC_000002.12 95.29 True relocation, inconsistency = 33968 89990395 89990992 91511886 91512483 NC_060926.1 NC_000002.12 99.16 True local misassembly 89994803 89997217 91512484 91514906 NC_060926.1 NC_000002.12 99.46 True local misassembly 89998713 90000873 91515266 91517426 NC_060926.1 NC_000002.12 99.91 True local misassembly 90004368 90006075 91517427 91519134 NC_060926.1 NC_000002.12 99.88 True local misassembly 90007006 90096565 91519135 91608682 NC_060926.1 NC_000002.12 99.93 True relocation, inconsistency = 1701831 91798463 91966132 91608749 91776390 NC_060926.1 NC_000002.12 99.93 True indel: indel (> 5bp) 91966133 91976286 91776427 91786586 NC_060926.1 NC_000002.12 99.94 True inversion 91976287 92255901 92066204 91786587 NC_060926.1 NC_000002.12 99.75 True inversion 92255902 92263127 92066205 92073428 NC_060926.1 NC_000002.12 99.9 True local misassembly 92263128 92270430 92074665 92081967 NC_060926.1 NC_000002.12 99.95 True relocation, inconsistency = 24342 92294773 92310112 92081968 92097307 NC_060926.1 NC_000002.12 99.95 True local misassembly 92311820 92327501 92097308 92112990 NC_060926.1 NC_000002.12 99.85 True local misassembly 92329200 92336832 92112991 92120623 NC_060926.1 NC_000002.12 99.75 True indel: indel (<= 5bp) 92337253 92337899 92121048 92121695 NC_060926.1 NC_000002.12 95.96 True relocation, inconsistency = 1432383 93770283 93771554 92121696 92122967 NC_060926.1 NC_000002.12 97.88 True fake: not a misassembly (possible transposable element) 94670718 94671720 92123009 92124011 NC_060926.1 NC_000002.12 95.82 True fake: not a misassembly (possible transposable element) 93773696 93774952 92124936 92126192 NC_060926.1 NC_000002.12 97.93 True fake: not a misassembly (possible transposable element) 94670718 94671720 92126234 92127236 NC_060926.1 NC_000002.12 95.72 True fake: not a misassembly (possible transposable element) 93783560 93786740 92134969 92138145 NC_060926.1 NC_000002.12 96.13 True relocation, scaffold gap is present, inconsistency = -591186 93246184 93247936 92188775 92190525 NC_060926.1 NC_000002.12 98.12 True relocation, inconsistency = 737430 93985770 93990156 92190929 92195318 NC_060926.1 NC_000002.12 96.86 True local misassembly 93990670 93992216 92195319 92196865 NC_060926.1 NC_000002.12 96.52 True relocation, inconsistency = 160007 94152224 94154335 92196866 92198979 NC_060926.1 NC_000002.12 96.64 True local misassembly 94154678 94155850 92198980 92200152 NC_060926.1 NC_000002.12 96.08 True local misassembly 94156193 94157500 92200153 92201461 NC_060926.1 NC_000002.12 95.57 True local misassembly 94157501 94161999 92201804 92206303 NC_060926.1 NC_000002.12 95.8 True relocation, inconsistency = -479098 93683679 93685639 92207081 92209041 NC_060926.1 NC_000002.12 95.72 True indel: indel (> 5bp) 93685811 93690062 92209042 92213296 NC_060926.1 NC_000002.12 98.0 True relocation, inconsistency = -527899 93164177 93164707 92215310 92215841 NC_060926.1 NC_000002.12 98.5 True relocation, inconsistency = 963840 94128548 94131752 92215842 92219046 NC_060926.1 NC_000002.12 97.13 True local misassembly 94131415 94132433 92219047 92220066 NC_060926.1 NC_000002.12 95.81 True local misassembly 94132776 94134587 92220067 92221880 NC_060926.1 NC_000002.12 96.8 True relocation, inconsistency = 102790 94238200 94248953 92222703 92233451 NC_060926.1 NC_000002.12 95.37 True relocation, inconsistency = -38560 94210394 94213746 92233452 92236804 NC_060926.1 NC_000002.12 96.7 True relocation, inconsistency = 25307 94239054 94246499 92236805 92244250 NC_060926.1 NC_000002.12 95.29 True relocation, inconsistency = 216609 94463109 94466020 92244251 92247161 NC_060926.1 NC_000002.12 96.8 True relocation, inconsistency = 50457 94516478 94524518 92247162 92255206 NC_060926.1 NC_000002.12 95.29 True relocation, inconsistency = -860844 93664523 93668967 92256055 92260501 NC_060926.1 NC_000002.12 97.08 True relocation, inconsistency = 128604 93797572 93801332 92260502 92264264 NC_060926.1 NC_000002.12 95.9 True relocation, inconsistency = 23959 93825292 93830614 92264265 92269590 NC_060926.1 NC_000002.12 96.6 True indel: indel (> 5bp) 93830615 93831352 92269762 92270499 NC_060926.1 NC_000002.12 97.83 True relocation, scaffold gap is present, inconsistency = -129830 93702344 93705266 92271321 92274247 NC_060926.1 NC_000002.12 97.3 True local misassembly 93705605 93709739 92274248 92278384 NC_060926.1 NC_000002.12 96.71 True relocation, inconsistency = -238852 93470888 93473759 92278385 92281264 NC_060926.1 NC_000002.12 96.94 True local misassembly 93474098 93476847 92281265 92284023 NC_060926.1 NC_000002.12 95.32 True relocation, inconsistency = -303303 93174275 93175747 92284754 92286227 NC_060926.1 NC_000002.12 95.01 True relocation, inconsistency = 484921 93660669 93664403 92286228 92289968 NC_060926.1 NC_000002.12 95.62 True local misassembly 93664742 93666749 92289969 92291976 NC_060926.1 NC_000002.12 98.51 True local misassembly 93666750 93671178 92292319 92296746 NC_060926.1 NC_000002.12 96.2 True relocation, inconsistency = 110935 93782114 93788026 92296747 92302660 NC_060926.1 NC_000002.12 97.73 True local misassembly 93788369 93789045 92302661 92303337 NC_060926.1 NC_000002.12 96.16 True relocation, inconsistency = -361462 93427878 93431529 92303632 92307283 NC_060926.1 NC_000002.12 97.56 True relocation, inconsistency = 913750 94345280 94345805 92307284 92307809 NC_060926.1 NC_000002.12 96.51 True relocation, inconsistency = 217860 94563833 94571538 92307977 92315681 NC_060926.1 NC_000002.12 95.54 True relocation, inconsistency = -932198 93639400 93642772 92315741 92319116 NC_060926.1 NC_000002.12 95.76 True relocation, inconsistency = 713160 94356067 94363605 92319251 92326795 NC_060926.1 NC_000002.12 96.08 True relocation, inconsistency = -1716581 92647025 92647964 92326796 92327736 NC_060926.1 NC_000002.12 97.95 True relocation, inconsistency = 1178913 93826878 93827738 92327737 92328598 NC_060926.1 NC_000002.12 96.99 True relocation, inconsistency = -110948 93716791 93723840 92328599 92335655 NC_060926.1 NC_000002.12 96.67 True relocation, inconsistency = 238062 93961903 93965733 92335656 92339487 NC_060926.1 NC_000002.12 95.21 True relocation, inconsistency = 528669 94494552 94499895 92339637 92344977 NC_060926.1 NC_000002.12 95.28 True relocation, inconsistency = -833998 93665898 93667305 92344978 92346391 NC_060926.1 NC_000002.12 96.57 True relocation, inconsistency = -1332996 92334310 92335438 92346392 92347519 NC_060926.1 NC_000002.12 96.67 True relocation, inconsistency = 1980417 94316085 94320959 92347749 92352627 NC_060926.1 NC_000002.12 95.72 True local misassembly 94321302 94324342 92352628 92355671 NC_060926.1 NC_000002.12 96.33 True relocation, inconsistency = -550584 93773759 93778885 92355672 92360797 NC_060926.1 NC_000002.12 97.31 True relocation, inconsistency = -471662 93310531 93313481 92364105 92367056 NC_060926.1 NC_000002.12 96.17 True local misassembly 93313820 93314784 92367057 92368022 NC_060926.1 NC_000002.12 97.26 True relocation, inconsistency = 508531 93823316 93830154 92368023 92374862 NC_060926.1 NC_000002.12 96.95 True relocation, inconsistency = -462665 93368185 93369595 92375558 92376969 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 93369767 93371751 92376970 92378955 NC_060926.1 NC_000002.12 98.84 True relocation, inconsistency = 36495 93408754 93409711 92379463 92380419 NC_060926.1 NC_000002.12 98.23 True local misassembly 93410049 93411073 92380420 92381445 NC_060926.1 NC_000002.12 97.27 True relocation, inconsistency = 913384 94324799 94334259 92381787 92391255 NC_060926.1 NC_000002.12 95.25 True relocation, inconsistency = -1745291 92589144 92591825 92391431 92394112 NC_060926.1 NC_000002.12 97.02 True relocation, inconsistency = 1383662 93975861 93980929 92394486 92399557 NC_060926.1 NC_000002.12 96.47 True relocation, inconsistency = 487049 94470046 94474906 92401625 92406481 NC_060926.1 NC_000002.12 95.76 True local misassembly 94475249 94481065 92406482 92412302 NC_060926.1 NC_000002.12 95.6 True relocation, inconsistency = -1140704 93340764 93343577 92412705 92415518 NC_060926.1 NC_000002.12 96.87 True relocation, inconsistency = 719035 94062865 94067139 92415771 92420046 NC_060926.1 NC_000002.12 95.93 True relocation, inconsistency = 57928 94126514 94130197 92421493 92425175 NC_060926.1 NC_000002.12 97.01 True relocation, inconsistency = -481798 93648400 93649321 92425176 92426097 NC_060926.1 NC_000002.12 96.13 True indel: indel (> 5bp) 93649322 93650482 92426269 92427431 NC_060926.1 NC_000002.12 96.35 True local misassembly 93644035 93648936 92427432 92432343 NC_060926.1 NC_000002.12 95.26 True fake: not a misassembly (possible transposable element) 92733939 92735809 92433440 92435310 NC_060926.1 NC_000002.12 96.47 True fake: not a misassembly (possible transposable element) 93652201 93657901 92435443 92441151 NC_060926.1 NC_000002.12 96.69 True relocation, inconsistency = -24274 93634033 93635039 92441557 92442563 NC_060926.1 NC_000002.12 96.92 True relocation, inconsistency = 386385 94022850 94027458 92443989 92448597 NC_060926.1 NC_000002.12 95.81 True local misassembly 94028229 94030745 92448598 92451113 NC_060926.1 NC_000002.12 96.99 True relocation, inconsistency = -19568 94011178 94016993 92451114 92456925 NC_060926.1 NC_000002.12 96.05 True relocation, inconsistency = -76220 93940774 93941729 92456926 92457881 NC_060926.1 NC_000002.12 97.4 True local misassembly 93941730 93944684 92458391 92461344 NC_060926.1 NC_000002.12 97.36 True relocation, inconsistency = -1626991 92317694 92318624 92461345 92462275 NC_060926.1 NC_000002.12 95.78 True relocation, inconsistency = 1503616 93822736 93828783 92462771 92468820 NC_060926.1 NC_000002.12 96.76 True relocation, inconsistency = -352182 93476602 93477410 92468821 92469630 NC_060926.1 NC_000002.12 96.63 True relocation, inconsistency = 1076278 94553689 94560408 92469631 92476349 NC_060926.1 NC_000002.12 95.9 True relocation, inconsistency = -434092 94126317 94129067 92476350 92479100 NC_060926.1 NC_000002.12 95.43 True indel: indel (> 5bp) 94129238 94130133 92479101 92479996 NC_060926.1 NC_000002.12 96.76 True local misassembly 94130472 94131720 92479997 92481244 NC_060926.1 NC_000002.12 96.88 True local misassembly 94131721 94132921 92481583 92482783 NC_060926.1 NC_000002.12 97.17 True relocation, inconsistency = -808724 93325650 93331517 92484236 92490103 NC_060926.1 NC_000002.12 97.11 True relocation, inconsistency = 50285 93381803 93382748 92490104 92491049 NC_060926.1 NC_000002.12 96.51 True local misassembly 93383088 93384490 92491050 92492452 NC_060926.1 NC_000002.12 97.93 True relocation, inconsistency = 402857 93787639 93788419 92492744 92493526 NC_060926.1 NC_000002.12 97.06 True indel: indel (> 5bp) 93788591 93797407 92493527 92502350 NC_060926.1 NC_000002.12 96.36 True relocation, inconsistency = 10539 93808065 93814011 92502469 92508419 NC_060926.1 NC_000002.12 96.87 True relocation, inconsistency = 290854 94105102 94106407 92508656 92509956 NC_060926.1 NC_000002.12 95.64 True relocation, inconsistency = -527272 93579495 93581297 92510316 92512119 NC_060926.1 NC_000002.12 96.45 True local misassembly 93581636 93584056 92512120 92514543 NC_060926.1 NC_000002.12 96.37 True relocation, inconsistency = 361334 93945391 93946694 92514544 92515847 NC_060926.1 NC_000002.12 96.14 True relocation, inconsistency = -442805 93503981 93506595 92515939 92518554 NC_060926.1 NC_000002.12 95.7 True relocation, inconsistency = 1036385 94542981 94548587 92518555 92524167 NC_060926.1 NC_000002.12 96.29 True local misassembly 94548588 94550024 92524510 92525946 NC_060926.1 NC_000002.12 96.94 True local misassembly 94550367 94551688 92525947 92527268 NC_060926.1 NC_000002.12 95.84 True relocation, inconsistency = -100078 94454063 94454986 92529721 92530640 NC_060926.1 NC_000002.12 95.45 True indel: indel (> 5bp) 94455158 94456687 92530641 92532169 NC_060926.1 NC_000002.12 96.95 True relocation, inconsistency = -1746334 92710354 92713167 92532170 92534983 NC_060926.1 NC_000002.12 96.41 True relocation, inconsistency = 1851343 94565701 94566538 92536174 92537008 NC_060926.1 NC_000002.12 95.23 True indel: indel (> 5bp) 94566539 94567385 92537180 92538026 NC_060926.1 NC_000002.12 95.87 True relocation, inconsistency = -305657 94261773 94265438 92538071 92541738 NC_060926.1 NC_000002.12 95.15 True indel: indel (> 5bp) 94265439 94267411 92541908 92543882 NC_060926.1 NC_000002.12 96.51 True indel: indel (> 5bp) 94267583 94269723 92543883 92546022 NC_060926.1 NC_000002.12 97.66 True indel: indel (> 5bp) 94269895 94270860 92546023 92546988 NC_060926.1 NC_000002.12 95.62 True relocation, inconsistency = -661351 93609510 93613935 92546989 92551420 NC_060926.1 NC_000002.12 97.38 True local misassembly 93613936 93615688 92551759 92553510 NC_060926.1 NC_000002.12 95.44 True indel: indel (> 5bp) 93615858 93618898 92553511 92556551 NC_060926.1 NC_000002.12 95.53 True relocation, inconsistency = -190090 93430582 93431387 92558325 92559130 NC_060926.1 NC_000002.12 98.01 True local misassembly 93432563 93438674 92559799 92565918 NC_060926.1 NC_000002.12 96.83 True relocation, inconsistency = 1160347 94599022 94601687 92565919 92568584 NC_060926.1 NC_000002.12 96.26 True relocation, inconsistency = -508694 94093211 94095582 92568802 92571174 NC_060926.1 NC_000002.12 95.2 True indel: indel (> 5bp) 94095750 94099614 92571175 92575043 NC_060926.1 NC_000002.12 95.58 True relocation, inconsistency = -344543 93755291 93756055 92575263 92576028 NC_060926.1 NC_000002.12 97.61 True relocation, inconsistency = -1262991 92493065 92497225 92576029 92580191 NC_060926.1 NC_000002.12 96.44 True indel: indel (> 5bp) 92497397 92498379 92580192 92581170 NC_060926.1 NC_000002.12 95.42 True relocation, inconsistency = 1407444 93905824 93908407 92581171 92583759 NC_060926.1 NC_000002.12 96.29 True relocation, inconsistency = -36549 93871859 93873013 92583760 92584914 NC_060926.1 NC_000002.12 96.88 True relocation, inconsistency = 155772 94029115 94033921 92585244 92590050 NC_060926.1 NC_000002.12 96.28 True indel: indel (> 5bp) 94034093 94039793 92590051 92595760 NC_060926.1 NC_000002.12 95.69 True relocation, inconsistency = 99721 94139770 94142025 92596016 92598272 NC_060926.1 NC_000002.12 96.37 True local misassembly 94146557 94148878 92601784 92604103 NC_060926.1 NC_000002.12 96.04 True relocation, inconsistency = 257202 94406469 94412433 92604492 92610454 NC_060926.1 NC_000002.12 95.66 True indel: indel (> 5bp) 94412604 94413787 92610455 92611638 NC_060926.1 NC_000002.12 96.37 True relocation, inconsistency = -315647 94099325 94102213 92612823 92615707 NC_060926.1 NC_000002.12 95.29 True relocation, inconsistency = -952286 93149941 93151439 92615721 92617216 NC_060926.1 NC_000002.12 96.6 True relocation, inconsistency = 1020423 94172042 94180728 92617396 92626083 NC_060926.1 NC_000002.12 95.73 True indel: indel (> 5bp) 94180899 94182076 92626084 92627262 NC_060926.1 NC_000002.12 97.03 True indel: indel (> 5bp) 94182248 94184611 92627263 92629624 NC_060926.1 NC_000002.12 98.01 True relocation, inconsistency = 448380 94640128 94643661 92636761 92640291 NC_060926.1 NC_000002.12 96.86 True relocation, inconsistency = -217007 94426872 94428740 92640509 92642378 NC_060926.1 NC_000002.12 95.08 True indel: indel (> 5bp) 94428910 94431219 92642379 92644688 NC_060926.1 NC_000002.12 95.84 True relocation, inconsistency = -1949875 92481345 92482423 92644689 92645770 NC_060926.1 NC_000002.12 98.31 True relocation, inconsistency = 2130694 94616367 94618687 92649020 92651341 NC_060926.1 NC_000002.12 96.3 True relocation, inconsistency = -477266 94144531 94148150 92654451 92658078 NC_060926.1 NC_000002.12 95.09 True relocation, inconsistency = -195682 93952755 93954391 92658365 92660000 NC_060926.1 NC_000002.12 97.8 True relocation, inconsistency = -194226 93760387 93761565 92660222 92661393 NC_060926.1 NC_000002.12 95.93 True relocation, inconsistency = 744302 94506043 94507747 92661569 92663273 NC_060926.1 NC_000002.12 95.07 True indel: indel (> 5bp) 94507919 94508744 92663274 92664100 NC_060926.1 NC_000002.12 97.34 True local misassembly 94512686 94513678 92664813 92665805 NC_060926.1 NC_000002.12 96.58 True relocation, inconsistency = -558235 93955444 93956288 92665806 92666650 NC_060926.1 NC_000002.12 98.3 True relocation, inconsistency = 572005 94533068 94534256 92671425 92672613 NC_060926.1 NC_000002.12 95.46 True indel: indel (> 5bp) 94534428 94537747 92672614 92675933 NC_060926.1 NC_000002.12 96.08 True relocation, inconsistency = -842331 93699633 93700484 92680150 92681006 NC_060926.1 NC_000002.12 95.57 True local misassembly 93701100 93703121 92681109 92683133 NC_060926.1 NC_000002.12 96.1 True relocation, inconsistency = -148561 93555098 93556962 92683671 92685535 NC_060926.1 NC_000002.12 96.25 True relocation, inconsistency = 1060084 94617051 94618225 92685540 92686714 NC_060926.1 NC_000002.12 95.23 True indel: indel (> 5bp) 94618397 94618967 92686715 92687287 NC_060926.1 NC_000002.12 99.13 True indel: indel (> 5bp) 94618968 94621672 92687459 92690162 NC_060926.1 NC_000002.12 97.04 True relocation, inconsistency = -1060253 93561539 93562724 92690282 92691467 NC_060926.1 NC_000002.12 95.95 True relocation, inconsistency = 114931 93677656 93678853 92691468 92692662 NC_060926.1 NC_000002.12 95.49 True indel: indel (> 5bp) 93679024 93680201 92692663 92693840 NC_060926.1 NC_000002.12 97.64 True relocation, inconsistency = 595986 94276188 94278054 92693841 92695709 NC_060926.1 NC_000002.12 96.84 True indel: indel (> 5bp) 94278226 94279743 92695710 92697229 NC_060926.1 NC_000002.12 96.12 True local misassembly 94281123 94283683 92698273 92700834 NC_060926.1 NC_000002.12 95.32 True indel: indel (> 5bp) 94283684 94284339 92701006 92701660 NC_060926.1 NC_000002.12 96.65 True relocation, scaffold gap is present, inconsistency = 159519 94444214 94445750 92702016 92703553 NC_060926.1 NC_000002.12 96.49 True indel: indel (> 5bp) 94445921 94449651 92703554 92707289 NC_060926.1 NC_000002.12 96.12 True indel: indel (> 5bp) 94449819 94452531 92707290 92710005 NC_060926.1 NC_000002.12 95.07 True indel: indel (> 5bp) 94452703 94454132 92710006 92711434 NC_060926.1 NC_000002.12 96.5 True local misassembly 94454133 94454986 92711945 92712800 NC_060926.1 NC_000002.12 96.96 True relocation, inconsistency = -631321 93823946 93827160 92713081 92716299 NC_060926.1 NC_000002.12 97.33 True indel: indel (> 5bp) 93827332 93828260 92716300 92717228 NC_060926.1 NC_000002.12 96.12 True relocation, inconsistency = -31430 93801252 93802692 92721650 92723090 NC_060926.1 NC_000002.12 96.04 True indel: indel (> 5bp) 93802864 93804251 92723091 92724478 NC_060926.1 NC_000002.12 95.46 True local misassembly 93805584 93806555 92725807 92726779 NC_060926.1 NC_000002.12 98.25 True relocation, inconsistency = -1083929 92722844 92724567 92726997 92728719 NC_060926.1 NC_000002.12 96.87 True indel: indel (> 5bp) 92724568 92725316 92728887 92729639 NC_060926.1 NC_000002.12 96.95 True relocation, inconsistency = 833088 93558821 93560687 92730056 92731921 NC_060926.1 NC_000002.12 95.82 True indel: indel (> 5bp) 93560859 93561830 92731922 92732889 NC_060926.1 NC_000002.12 95.78 True relocation, inconsistency = 1035438 94598676 94601687 92734297 92737309 NC_060926.1 NC_000002.12 95.52 True local misassembly 94606851 94609054 92742470 92744673 NC_060926.1 NC_000002.12 97.37 True relocation, inconsistency = -984696 93624719 93625619 92745034 92745934 NC_060926.1 NC_000002.12 97.89 True local misassembly 93625958 93628017 92745935 92747994 NC_060926.1 NC_000002.12 98.11 True relocation, inconsistency = 600534 94230144 94232990 92749587 92752435 NC_060926.1 NC_000002.12 95.75 True relocation, inconsistency = -1191008 93049404 93050184 92759857 92760638 NC_060926.1 NC_000002.12 95.14 True fake: not a misassembly (possible transposable element) 94321509 94322480 92760639 92761606 NC_060926.1 NC_000002.12 95.99 True fake: not a misassembly (possible transposable element) 93051545 93052562 92761996 92763013 NC_060926.1 NC_000002.12 99.8 True relocation, inconsistency = 1191518 94249006 94250700 92767939 92769635 NC_060926.1 NC_000002.12 96.05 True relocation, inconsistency = 194197 94446071 94446880 92770809 92771626 NC_060926.1 NC_000002.12 96.82 True relocation, inconsistency = -431383 94016902 94018100 92773031 92774228 NC_060926.1 NC_000002.12 95.41 True indel: indel (> 5bp) 94018271 94019744 92774229 92775702 NC_060926.1 NC_000002.12 95.79 True relocation, inconsistency = -194498 93825416 93827167 92775872 92777623 NC_060926.1 NC_000002.12 97.37 True relocation, inconsistency = 58659 93885832 93887009 92777629 92778806 NC_060926.1 NC_000002.12 95.08 True relocation, inconsistency = -65797 93821280 93823235 92778874 92780834 NC_060926.1 NC_000002.12 95.1 True indel: indel (> 5bp) 93823236 93825120 92781002 92782886 NC_060926.1 NC_000002.12 96.82 True relocation, inconsistency = 314814 94141113 94143327 92784065 92786279 NC_060926.1 NC_000002.12 95.44 True indel: indel (> 5bp) 94143495 94145574 92786280 92788357 NC_060926.1 NC_000002.12 96.35 True local misassembly 94146255 94147559 92788358 92789666 NC_060926.1 NC_000002.12 97.94 True relocation, inconsistency = -177331 93970425 93972774 92789863 92792213 NC_060926.1 NC_000002.12 95.58 True local misassembly 93982468 93985864 92796294 92799690 NC_060926.1 NC_000002.12 97.38 True indel: indel (> 5bp) 93986036 93987013 92799691 92800669 NC_060926.1 NC_000002.12 97.04 True relocation, inconsistency = -189307 93801504 93803714 92804467 92806673 NC_060926.1 NC_000002.12 95.57 True local misassembly 93803715 93804732 92807179 92808196 NC_060926.1 NC_000002.12 98.33 True indel: indel (> 5bp) 93804904 93806092 92808197 92809386 NC_060926.1 NC_000002.12 95.29 True indel: indel (> 5bp) 93806264 93807451 92809387 92810572 NC_060926.1 NC_000002.12 97.14 True indel: indel (> 5bp) 93807623 93808817 92810573 92811768 NC_060926.1 NC_000002.12 98.33 True relocation, inconsistency = 176717 93986551 93987909 92812785 92814143 NC_060926.1 NC_000002.12 98.23 True indel: indel (> 5bp) 93988081 93990177 92814144 92816242 NC_060926.1 NC_000002.12 95.95 True relocation, inconsistency = 179042 94169670 94170510 92816693 92817534 NC_060926.1 NC_000002.12 96.91 True local misassembly 94170511 94172210 92818044 92819739 NC_060926.1 NC_000002.12 95.88 True local misassembly 94180220 94183435 92822139 92825356 NC_060926.1 NC_000002.12 96.4 True indel: indel (> 5bp) 94183607 94184877 92825357 92826629 NC_060926.1 NC_000002.12 97.88 True relocation, inconsistency = -481658 93703872 93705567 92827282 92828987 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 93705568 93708341 92829156 92831929 NC_060926.1 NC_000002.12 95.1 True indel: indel (> 5bp) 93708342 93709958 92832097 92833720 NC_060926.1 NC_000002.12 95.32 True relocation, inconsistency = 781510 94491624 94492821 92833876 92835075 NC_060926.1 NC_000002.12 95.33 True local misassembly 94493988 94495844 92836242 92838103 NC_060926.1 NC_000002.12 96.78 True relocation, inconsistency = -731390 93764819 93766558 92838468 92840209 NC_060926.1 NC_000002.12 96.9 True indel: indel (> 5bp) 93766559 93767456 92840378 92841275 NC_060926.1 NC_000002.12 96.66 True relocation, inconsistency = -149623 93619255 93620441 92842697 92843881 NC_060926.1 NC_000002.12 96.88 True indel: indel (> 5bp) 93620613 93621962 92843882 92845232 NC_060926.1 NC_000002.12 95.71 True relocation, inconsistency = -1131542 92490421 92491472 92845233 92846284 NC_060926.1 NC_000002.12 98.19 True local misassembly 92491473 92492807 92846790 92848124 NC_060926.1 NC_000002.12 98.5 True relocation, inconsistency = 1145800 93639011 93641837 92848528 92851358 NC_060926.1 NC_000002.12 96.68 True relocation, inconsistency = 447986 94090123 94091682 92851658 92853217 NC_060926.1 NC_000002.12 95.06 True indel: indel (> 5bp) 94091854 94092822 92853218 92854190 NC_060926.1 NC_000002.12 95.58 True relocation, inconsistency = 516517 94609585 94610744 92854436 92855596 NC_060926.1 NC_000002.12 95.35 True indel: indel (> 5bp) 94610916 94611868 92855597 92856551 NC_060926.1 NC_000002.12 97.28 True relocation, inconsistency = -2124394 92488913 92491447 92857990 92860530 NC_060926.1 NC_000002.12 97.56 True indel: indel (> 5bp) 92491619 92492807 92860531 92861719 NC_060926.1 NC_000002.12 97.31 True relocation, inconsistency = 481450 92974365 92975842 92861827 92863305 NC_060926.1 NC_000002.12 96.69 True local misassembly 92976634 92977704 92863589 92864664 NC_060926.1 NC_000002.12 95.82 True indel: indel (> 5bp) 92977705 92978840 92864833 92865969 NC_060926.1 NC_000002.12 97.63 True indel: indel (> 5bp) 92979012 92979583 92865970 92866540 NC_060926.1 NC_000002.12 97.38 True relocation, inconsistency = 685904 93666135 93667174 92867188 92868232 NC_060926.1 NC_000002.12 95.31 True indel: indel (> 5bp) 93667175 93669592 92868401 92870821 NC_060926.1 NC_000002.12 96.57 True relocation, inconsistency = 856605 94526440 94527290 92871064 92871913 NC_060926.1 NC_000002.12 97.06 True local misassembly 94528650 94532339 92873266 92876955 NC_060926.1 NC_000002.12 95.77 True relocation, inconsistency = 216773 94309637 94310295 92879195 92878537 NC_060926.1 NC_000002.12 99.7 True relocation, scaffold gap is present, inconsistency = 476908 93831749 93832628 92879296 92880175 NC_060926.1 NC_000002.12 97.05 True local misassembly 93833978 93834751 92881527 92882301 NC_060926.1 NC_000002.12 96.9 True relocation, inconsistency = -1382769 92452885 92453711 92883204 92884030 NC_060926.1 NC_000002.12 98.31 True relocation, inconsistency = 2122846 94577598 94578362 92885071 92885833 NC_060926.1 NC_000002.12 97.12 True indel: indel (> 5bp) 94578363 94579246 92886003 92886886 NC_060926.1 NC_000002.12 96.15 True relocation, inconsistency = -515136 94064330 94065520 92887106 92888295 NC_060926.1 NC_000002.12 95.72 True indel: indel (> 5bp) 94065692 94066659 92888296 92889263 NC_060926.1 NC_000002.12 96.49 True relocation, inconsistency = -1717806 92351116 92352817 92891526 92893232 NC_060926.1 NC_000002.12 96.37 True indel: indel (> 5bp) 92352818 92354008 92893400 92894590 NC_060926.1 NC_000002.12 97.48 True relocation, inconsistency = 93115 92447124 92447860 92894591 92895329 NC_060926.1 NC_000002.12 96.65 True local misassembly 92448811 92449918 92896454 92897565 NC_060926.1 NC_000002.12 95.77 True local misassembly 92450266 92451018 92897566 92898317 NC_060926.1 NC_000002.12 97.34 True relocation, inconsistency = 1635398 94086417 94087250 92898318 92899145 NC_060926.1 NC_000002.12 96.4 True local misassembly 94088453 94089653 92900351 92901553 NC_060926.1 NC_000002.12 95.59 True relocation, inconsistency = -392962 93696693 93699793 92901555 92904657 NC_060926.1 NC_000002.12 96.23 True indel: indel (> 5bp) 93699794 93700690 92904826 92905724 NC_060926.1 NC_000002.12 96.33 True relocation, inconsistency = 123683 93824612 93825800 92905963 92907151 NC_060926.1 NC_000002.12 95.29 True fake: not a misassembly (possible transposable element) 93759708 93761497 92907152 92908939 NC_060926.1 NC_000002.12 97.15 True fake: not a misassembly (possible transposable element) 93828012 93830559 92909017 92911565 NC_060926.1 NC_000002.12 96.55 True indel: indel (> 5bp) 93830560 93831650 92911739 92912831 NC_060926.1 NC_000002.12 95.79 True local misassembly 93831651 93832595 92913172 92914117 NC_060926.1 NC_000002.12 97.78 True indel: indel (> 5bp) 93832767 93833955 92914118 92915307 NC_060926.1 NC_000002.12 97.48 True local misassembly 93834294 93834972 92915308 92915986 NC_060926.1 NC_000002.12 98.53 True relocation, inconsistency = -1337576 92497397 92499245 92915987 92917836 NC_060926.1 NC_000002.12 95.78 True relocation, inconsistency = 652700 93151966 93153154 92917857 92919041 NC_060926.1 NC_000002.12 95.04 True indel: indel (> 5bp) 93153326 93154274 92919042 92919988 NC_060926.1 NC_000002.12 96.0 True relocation, inconsistency = -288793 92866907 92868020 92921414 92922523 NC_060926.1 NC_000002.12 96.77 True relocation, inconsistency = 410084 93279715 93280910 92924134 92925326 NC_060926.1 NC_000002.12 96.18 True relocation, inconsistency = -860620 92420296 92421480 92925332 92926520 NC_060926.1 NC_000002.12 95.21 True indel: indel (> 5bp) 92421651 92422658 92926521 92927532 NC_060926.1 NC_000002.12 95.36 True local misassembly 92424033 92424969 92928901 92929839 NC_060926.1 NC_000002.12 96.49 True relocation, inconsistency = 1645239 94070457 94071634 92930088 92931265 NC_060926.1 NC_000002.12 95.42 True indel: indel (> 5bp) 94071804 94073436 92931266 92932901 NC_060926.1 NC_000002.12 96.27 True relocation, inconsistency = 560703 94635618 94637202 92934380 92935968 NC_060926.1 NC_000002.12 95.91 True relocation, inconsistency = -24296 94614316 94615505 92937378 92938565 NC_060926.1 NC_000002.12 95.04 True indel: indel (> 5bp) 94615677 94617545 92938566 92940434 NC_060926.1 NC_000002.12 96.2 True indel: indel (> 5bp) 94617717 94618967 92940435 92941682 NC_060926.1 NC_000002.12 95.68 True indel: indel (> 5bp) 94618968 94619909 92941854 92942795 NC_060926.1 NC_000002.12 95.33 True relocation, inconsistency = -2136636 92483458 92484614 92942980 92944137 NC_060926.1 NC_000002.12 96.89 True local misassembly 92485059 92486007 92945600 92946549 NC_060926.1 NC_000002.12 95.68 True indel: indel (> 5bp) 92486179 92487367 92946550 92947740 NC_060926.1 NC_000002.12 96.56 True indel: indel (> 5bp) 92487539 92488727 92947741 92948929 NC_060926.1 NC_000002.12 97.91 True relocation, inconsistency = 1223921 93712649 93713847 92948930 92950131 NC_060926.1 NC_000002.12 97.0 True relocation, inconsistency = -1152061 92562980 92564154 92951325 92952499 NC_060926.1 NC_000002.12 97.11 True indel: indel (> 5bp) 92564326 92565524 92952500 92953698 NC_060926.1 NC_000002.12 97.5 True indel: indel (> 5bp) 92565695 92566717 92953699 92954719 NC_060926.1 NC_000002.12 97.95 True relocation, inconsistency = -130635 92436297 92437438 92954934 92956086 NC_060926.1 NC_000002.12 96.01 True relocation, inconsistency = 2114506 94555508 94556447 92959650 92960589 NC_060926.1 NC_000002.12 96.28 True indel: indel (> 5bp) 94557036 94557553 92961003 92961520 NC_060926.1 NC_000002.12 97.1 True indel: indel (> 5bp) 94557554 94559871 92961689 92964006 NC_060926.1 NC_000002.12 96.29 True relocation, inconsistency = -566571 93993531 93994535 92964237 92965241 NC_060926.1 NC_000002.12 96.22 True indel: indel (> 5bp) 93994703 93996575 92965242 92967114 NC_060926.1 NC_000002.12 98.08 True relocation, inconsistency = -1436503 92560239 92562801 92967281 92969842 NC_060926.1 NC_000002.12 97.23 True relocation, inconsistency = 120623 92683435 92685298 92969853 92971715 NC_060926.1 NC_000002.12 98.07 True indel: indel (> 5bp) 92685469 92687327 92971716 92973573 NC_060926.1 NC_000002.12 98.22 True relocation, inconsistency = 1695866 94384384 94385308 92974764 92975684 NC_060926.1 NC_000002.12 96.76 True relocation, inconsistency = -147775 94237786 94238737 92975937 92976884 NC_060926.1 NC_000002.12 95.38 True relocation, inconsistency = 236658 94476830 94478015 92978319 92979500 NC_060926.1 NC_000002.12 95.53 True relocation, inconsistency = 8494 94486513 94487677 92979504 92980673 NC_060926.1 NC_000002.12 95.21 True relocation, inconsistency = -1276451 93214811 93215948 92984258 92985390 NC_060926.1 NC_000002.12 95.17 True relocation, inconsistency = 895734 94112920 94114550 92986628 92988260 NC_060926.1 NC_000002.12 97.0 True relocation, inconsistency = 360688 94475663 94476658 92988685 92989681 NC_060926.1 NC_000002.12 95.29 True indel: indel (> 5bp) 94476830 94478029 92989682 92990882 NC_060926.1 NC_000002.12 96.67 True indel: indel (> 5bp) 94478200 94479376 92990883 92992061 NC_060926.1 NC_000002.12 97.71 True indel: indel (> 5bp) 94479548 94481148 92992062 92993665 NC_060926.1 NC_000002.12 96.63 True relocation, inconsistency = -265532 94215882 94217051 92993931 92995100 NC_060926.1 NC_000002.12 98.46 True relocation, inconsistency = 239540 94456782 94459170 92995291 92997680 NC_060926.1 NC_000002.12 95.9 True indel: indel (> 5bp) 94459341 94460298 92997681 92998638 NC_060926.1 NC_000002.12 96.97 True relocation, inconsistency = -282002 94180889 94182238 93001231 93002580 NC_060926.1 NC_000002.12 96.74 True indel: indel (> 5bp) 94182410 94183251 93002581 93003423 NC_060926.1 NC_000002.12 97.39 True relocation, inconsistency = 430199 94613650 94614824 93003623 93004797 NC_060926.1 NC_000002.12 95.83 True indel: indel (> 5bp) 94614996 94615960 93004798 93005763 NC_060926.1 NC_000002.12 97.52 True relocation, inconsistency = -340166 94276868 94278054 93006837 93008021 NC_060926.1 NC_000002.12 97.05 True relocation, inconsistency = -1648662 92629408 92630592 93008037 93009221 NC_060926.1 NC_000002.12 96.37 True indel: indel (> 5bp) 92630763 92633300 93009222 93011755 NC_060926.1 NC_000002.12 95.63 True indel: indel (> 5bp) 92633472 92635155 93011756 93013440 NC_060926.1 NC_000002.12 96.74 True relocation, inconsistency = -189247 92448134 92449099 93015666 93016629 NC_060926.1 NC_000002.12 95.76 True relocation, inconsistency = 1895803 94346315 94348183 93018042 93019913 NC_060926.1 NC_000002.12 95.51 True relocation, inconsistency = -1749202 92600172 92601362 93021104 93022295 NC_060926.1 NC_000002.12 95.05 True indel: indel (> 5bp) 92601533 92602718 93022296 93023477 NC_060926.1 NC_000002.12 97.72 True indel: indel (> 5bp) 92602890 92603860 93023478 93024448 NC_060926.1 NC_000002.12 98.25 True relocation, inconsistency = -159683 92444451 92445586 93024722 93025856 NC_060926.1 NC_000002.12 97.27 True indel: indel (> 5bp) 92445758 92446956 93025857 93027056 NC_060926.1 NC_000002.12 97.25 True local misassembly 92456279 92458147 93029426 93031292 NC_060926.1 NC_000002.12 97.27 True local misassembly 92451190 92451956 93031293 93032061 NC_060926.1 NC_000002.12 97.27 True relocation, inconsistency = 1269952 93721913 93723686 93032066 93033843 NC_060926.1 NC_000002.12 96.06 True indel: indel (> 5bp) 93723858 93725027 93033844 93035013 NC_060926.1 NC_000002.12 98.12 True indel: indel (> 5bp) 93725028 93725831 93035181 93035985 NC_060926.1 NC_000002.12 97.89 True relocation, inconsistency = 911525 94637596 94638533 93036225 93037164 NC_060926.1 NC_000002.12 96.06 True relocation, inconsistency = -302829 94337140 94337987 93038600 93039447 NC_060926.1 NC_000002.12 95.99 True indel: indel (> 5bp) 94338159 94340588 93039448 93041876 NC_060926.1 NC_000002.12 96.09 True relocation, inconsistency = 107925 94448639 94450989 93042002 93044353 NC_060926.1 NC_000002.12 95.62 True relocation, inconsistency = 88692 94539866 94540723 93044538 93045395 NC_060926.1 NC_000002.12 96.27 True relocation, inconsistency = -2130456 92412803 92413485 93047931 93048613 NC_060926.1 NC_000002.12 96.34 True indel: indel (> 5bp) 92413486 92415812 93048785 93051111 NC_060926.1 NC_000002.12 95.75 True relocation, inconsistency = 1469106 93885174 93887009 93051367 93053201 NC_060926.1 NC_000002.12 96.19 True indel: indel (> 5bp) 93887181 93888147 93053202 93054169 NC_060926.1 NC_000002.12 97.93 True relocation, inconsistency = 250887 94140440 94142626 93055575 93057758 NC_060926.1 NC_000002.12 96.43 True relocation, inconsistency = -25651 94117008 94118681 93057791 93059464 NC_060926.1 NC_000002.12 96.77 True local misassembly 94123784 94125133 93064400 93065751 NC_060926.1 NC_000002.12 97.63 True relocation, inconsistency = 338258 94464256 94466123 93066616 93068485 NC_060926.1 NC_000002.12 95.94 True relocation, inconsistency = 157719 94626388 94628251 93071031 93072892 NC_060926.1 NC_000002.12 95.39 True relocation, inconsistency = -2085842 92543596 92544785 93074079 93075268 NC_060926.1 NC_000002.12 97.14 True indel: indel (> 5bp) 92544957 92545782 93075269 93076094 NC_060926.1 NC_000002.12 98.43 True relocation, inconsistency = 133874 92681108 92682567 93077546 93079005 NC_060926.1 NC_000002.12 98.29 True indel: indel (> 5bp) 92682739 92685294 93079006 93081557 NC_060926.1 NC_000002.12 96.13 True relocation, inconsistency = 1076119 93761462 93762359 93081606 93082503 NC_060926.1 NC_000002.12 98.33 True relocation, inconsistency = -890421 92873360 92874385 93083925 93084949 NC_060926.1 NC_000002.12 98.05 True relocation, inconsistency = 1658690 94534428 94537472 93086302 93089343 NC_060926.1 NC_000002.12 95.24 True relocation, inconsistency = -561464 93976193 93977159 93089528 93090494 NC_060926.1 NC_000002.12 98.45 True relocation, inconsistency = 74727 94054477 94055327 93093085 93093931 NC_060926.1 NC_000002.12 95.89 True relocation, inconsistency = -1574927 92480739 92481927 93094270 93095454 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 92482099 92483449 93095455 93096806 NC_060926.1 NC_000002.12 97.49 True relocation, inconsistency = 148825 92632275 92633311 93096807 93097844 NC_060926.1 NC_000002.12 95.76 True indel: indel (> 5bp) 92633482 92634208 93097845 93098572 NC_060926.1 NC_000002.12 97.12 True indel: indel (> 5bp) 92634209 92635122 93098740 93099654 NC_060926.1 NC_000002.12 98.69 True relocation, inconsistency = -149841 92485492 92487367 93099865 93101741 NC_060926.1 NC_000002.12 98.35 True indel: indel (> 5bp) 92487539 92488734 93101742 93102932 NC_060926.1 NC_000002.12 96.15 True relocation, inconsistency = 1766734 94255469 94256649 93102933 93104116 NC_060926.1 NC_000002.12 96.64 True local misassembly 94259538 94260390 93106486 93107338 NC_060926.1 NC_000002.12 97.77 True local misassembly 94260391 94261909 93107844 93109369 NC_060926.1 NC_000002.12 95.02 True indel: indel (> 5bp) 94261910 94263098 93109537 93110721 NC_060926.1 NC_000002.12 96.38 True relocation, inconsistency = -1161768 93101338 93102526 93110729 93111917 NC_060926.1 NC_000002.12 98.23 True indel: indel (> 5bp) 93102698 93103886 93111918 93113106 NC_060926.1 NC_000002.12 95.54 True indel: indel (> 5bp) 93104058 93104884 93113107 93113927 NC_060926.1 NC_000002.12 95.53 True relocation, inconsistency = 905535 94010783 94014173 93114291 93117677 NC_060926.1 NC_000002.12 96.28 True indel: indel (> 5bp) 94014345 94015152 93117678 93118485 NC_060926.1 NC_000002.12 98.27 True relocation, inconsistency = 498831 94516752 94517723 93121254 93122226 NC_060926.1 NC_000002.12 97.84 True relocation, inconsistency = -41111 94476830 94478029 93122444 93123645 NC_060926.1 NC_000002.12 96.84 True indel: indel (> 5bp) 94478200 94479893 93123646 93125342 NC_060926.1 NC_000002.12 97.94 True relocation, inconsistency = -1802078 92677979 92679133 93125506 93126660 NC_060926.1 NC_000002.12 98.53 True local misassembly 92679134 92679858 93127170 93127895 NC_060926.1 NC_000002.12 98.48 True indel: indel (> 5bp) 92680029 92681207 93127896 93129075 NC_060926.1 NC_000002.12 96.44 True indel: indel (> 5bp) 92681379 92682567 93129076 93130260 NC_060926.1 NC_000002.12 96.72 True indel: indel (> 5bp) 92682739 92685315 93130261 93132826 NC_060926.1 NC_000002.12 96.43 True relocation, inconsistency = -233081 92452235 92453176 93132827 93133771 NC_060926.1 NC_000002.12 96.3 True fake: not a misassembly (possible transposable element) 92626157 92627182 93138563 93139589 NC_060926.1 NC_000002.12 96.69 True fake: not a misassembly (possible transposable element) 92462055 92462793 93139590 93140327 NC_060926.1 NC_000002.12 97.56 True relocation, inconsistency = 165131 92628092 92629222 93140495 93141625 NC_060926.1 NC_000002.12 97.26 True indel: indel (> 5bp) 92629394 92631040 93141626 93143269 NC_060926.1 NC_000002.12 96.36 True relocation, inconsistency = 1531443 94171030 94172050 93151816 93152837 NC_060926.1 NC_000002.12 95.3 True indel: indel (> 5bp) 94172051 94173020 93153005 93153970 NC_060926.1 NC_000002.12 95.57 True relocation, inconsistency = -1504438 92668802 92669990 93154190 93155382 NC_060926.1 NC_000002.12 97.23 True relocation, inconsistency = -123164 92548042 92549213 93156598 93157770 NC_060926.1 NC_000002.12 95.06 True indel: indel (> 5bp) 92549384 92550561 93157771 93158947 NC_060926.1 NC_000002.12 95.25 True indel: indel (> 5bp) 92550733 92551921 93158948 93160136 NC_060926.1 NC_000002.12 98.07 True indel: indel (> 5bp) 92552093 92552782 93160137 93160831 NC_060926.1 NC_000002.12 95.25 True indel: indel (> 5bp) 92552783 92553967 93161000 93162182 NC_060926.1 NC_000002.12 97.64 True relocation, inconsistency = 1386040 93940013 93941019 93162188 93163198 NC_060926.1 NC_000002.12 96.44 True indel: indel (> 5bp) 93941020 93942220 93163366 93164566 NC_060926.1 NC_000002.12 95.42 True relocation, inconsistency = -1460111 92482113 92483287 93164570 93165745 NC_060926.1 NC_000002.12 98.04 True indel: indel (> 5bp) 92483459 92484647 93165746 93166936 NC_060926.1 NC_000002.12 96.41 True relocation, inconsistency = 279968 92764616 92765814 93166937 93168137 NC_060926.1 NC_000002.12 95.59 True indel: indel (> 5bp) 92765985 92766770 93168138 93168923 NC_060926.1 NC_000002.12 97.07 True indel: indel (> 5bp) 92766771 92767819 93169095 93170144 NC_060926.1 NC_000002.12 95.05 True relocation, inconsistency = -272149 92495866 92497225 93170340 93171699 NC_060926.1 NC_000002.12 97.06 True indel: indel (> 5bp) 92497395 92498316 93171700 93172621 NC_060926.1 NC_000002.12 97.18 True local misassembly 92499113 92500287 93173928 93175102 NC_060926.1 NC_000002.12 97.45 True indel: indel (> 5bp) 92500459 92501658 93175103 93176298 NC_060926.1 NC_000002.12 95.33 True indel: indel (> 5bp) 92501829 92503007 93176299 93177476 NC_060926.1 NC_000002.12 97.2 True relocation, inconsistency = 100559 92603567 92604757 93177477 93178667 NC_060926.1 NC_000002.12 97.73 True indel: indel (> 5bp) 92604929 92606117 93178668 93179856 NC_060926.1 NC_000002.12 97.9 True indel: indel (> 5bp) 92606287 92606926 93179857 93180496 NC_060926.1 NC_000002.12 97.34 True relocation, inconsistency = 313785 92921658 92922449 93181443 93182234 NC_060926.1 NC_000002.12 95.33 True indel: indel (> 5bp) 92922621 92923816 93182235 93183429 NC_060926.1 NC_000002.12 97.66 True relocation, inconsistency = 962525 93889900 93891097 93186988 93188187 NC_060926.1 NC_000002.12 96.0 True local misassembly 93892470 93894143 93189566 93191240 NC_060926.1 NC_000002.12 97.15 True relocation, inconsistency = 592369 94486513 94488474 93191241 93193205 NC_060926.1 NC_000002.12 95.73 True relocation, inconsistency = 84290 94574210 94575161 93194651 93195603 NC_060926.1 NC_000002.12 95.6 True relocation, inconsistency = -1754024 92821363 92823231 93195829 93197699 NC_060926.1 NC_000002.12 97.59 True indel: indel (> 5bp) 92823403 92824373 93197700 93198668 NC_060926.1 NC_000002.12 96.4 True relocation, inconsistency = 623411 93449192 93450152 93200076 93201038 NC_060926.1 NC_000002.12 97.2 True relocation, inconsistency = -685593 92765975 92767139 93202454 93203623 NC_060926.1 NC_000002.12 96.15 True indel: indel (> 5bp) 92767789 92768526 93204101 93204838 NC_060926.1 NC_000002.12 95.8 True relocation, inconsistency = 1551798 94323549 94324466 93208063 93208983 NC_060926.1 NC_000002.12 97.07 True local misassembly 94327626 94328529 93212306 93213207 NC_060926.1 NC_000002.12 95.8 True relocation, inconsistency = 190835 94520829 94522702 93214672 93216545 NC_060926.1 NC_000002.12 95.3 True local misassembly 94524229 94526424 93217729 93219920 NC_060926.1 NC_000002.12 95.17 True relocation, inconsistency = -590682 93940013 93940848 93224191 93225026 NC_060926.1 NC_000002.12 98.68 True indel: indel (> 5bp) 93941019 93943227 93225027 93227235 NC_060926.1 NC_000002.12 97.1 True indel: indel (> 5bp) 93943399 93944684 93227236 93228522 NC_060926.1 NC_000002.12 96.74 True relocation, inconsistency = 682813 94627753 94628529 93228778 93229554 NC_060926.1 NC_000002.12 95.88 True local misassembly 94629784 94630719 93230804 93231740 NC_060926.1 NC_000002.12 97.01 True relocation, inconsistency = -1862962 92768025 92769211 93232008 93233194 NC_060926.1 NC_000002.12 98.23 True indel: indel (> 5bp) 92769382 92770374 93233195 93234189 NC_060926.1 NC_000002.12 96.58 True relocation, inconsistency = 967745 93743397 93745273 93239467 93241341 NC_060926.1 NC_000002.12 96.16 True indel: indel (> 5bp) 93745444 93746615 93241342 93242507 NC_060926.1 NC_000002.12 96.59 True indel: indel (> 5bp) 93746616 93747804 93242678 93243866 NC_060926.1 NC_000002.12 95.79 True indel: indel (> 5bp) 93747976 93748777 93243867 93244668 NC_060926.1 NC_000002.12 95.39 True relocation, inconsistency = 782367 94531370 94532339 93244894 93245863 NC_060926.1 NC_000002.12 98.25 True relocation, inconsistency = -480633 94053279 94054086 93247436 93248243 NC_060926.1 NC_000002.12 97.65 True relocation, inconsistency = -1655944 92400582 92401759 93250683 93251859 NC_060926.1 NC_000002.12 95.08 True indel: indel (> 5bp) 92401931 92403118 93251860 93253048 NC_060926.1 NC_000002.12 98.15 True indel: indel (> 5bp) 92403290 92404060 93253049 93253819 NC_060926.1 NC_000002.12 97.41 True relocation, inconsistency = 1535524 93940002 93941019 93254237 93255258 NC_060926.1 NC_000002.12 95.01 True indel: indel (> 5bp) 93941020 93941987 93255426 93256388 NC_060926.1 NC_000002.12 96.07 True relocation, inconsistency = -1000215 92941992 92943860 93256608 93258473 NC_060926.1 NC_000002.12 96.9 True fake: not a misassembly (possible transposable element) 94099341 94100294 93259336 93260289 NC_060926.1 NC_000002.12 97.69 True fake: not a misassembly (possible transposable element) 92946082 92946916 93260520 93261355 NC_060926.1 NC_000002.12 98.44 True relocation, inconsistency = -18353 92932476 92933441 93265268 93266230 NC_060926.1 NC_000002.12 95.55 True relocation, inconsistency = 457313 93393762 93395286 93269238 93270766 NC_060926.1 NC_000002.12 95.75 True indel: indel (> 5bp) 93395287 93396760 93270935 93272408 NC_060926.1 NC_000002.12 97.6 True relocation, inconsistency = 803494 94200255 94202321 93272409 93274475 NC_060926.1 NC_000002.12 95.79 True relocation, inconsistency = -657737 93545874 93547455 93275765 93277346 NC_060926.1 NC_000002.12 98.17 True local misassembly 93548624 93549598 93278516 93279488 NC_060926.1 NC_000002.12 95.9 True relocation, inconsistency = 985302 94539866 94541216 93284454 93285804 NC_060926.1 NC_000002.12 95.34 True indel: indel (> 5bp) 94541388 94542145 93285805 93286561 NC_060926.1 NC_000002.12 95.51 True local misassembly 94542146 94542756 93287067 93287681 NC_060926.1 NC_000002.12 95.12 True local misassembly 94542757 94544463 93288187 93289896 NC_060926.1 NC_000002.12 95.91 True indel: indel (> 5bp) 94544634 94545638 93289897 93290901 NC_060926.1 NC_000002.12 96.02 True local misassembly 94547354 94548532 93292282 93293459 NC_060926.1 NC_000002.12 95.0 True local misassembly 94550074 94551035 93294655 93295617 NC_060926.1 NC_000002.12 95.64 True relocation, scaffold gap is present, inconsistency = -268466 94285544 94286534 93298592 93299581 NC_060926.1 NC_000002.12 96.67 True relocation, inconsistency = -1821942 92465341 92465962 93300330 93300951 NC_060926.1 NC_000002.12 98.55 True relocation, inconsistency = -29720 92436243 92437431 93300952 93302136 NC_060926.1 NC_000002.12 96.72 True indel: indel (> 5bp) 92437603 92438813 93302137 93303344 NC_060926.1 NC_000002.12 96.45 True relocation, inconsistency = 229848 92672201 92673288 93306884 93307971 NC_060926.1 NC_000002.12 97.7 True local misassembly 92673289 92674070 93308482 93309263 NC_060926.1 NC_000002.12 97.83 True indel: indel (> 5bp) 92674242 92675441 93309264 93310459 NC_060926.1 NC_000002.12 97.42 True indel: indel (> 5bp) 92675612 92676789 93310460 93311638 NC_060926.1 NC_000002.12 95.34 True relocation, inconsistency = 1920526 94597330 94600018 93311653 93314341 NC_060926.1 NC_000002.12 96.58 True indel: indel (> 5bp) 94600190 94601904 93314342 93316056 NC_060926.1 NC_000002.12 95.22 True indel: indel (> 5bp) 94602074 94603014 93316057 93316997 NC_060926.1 NC_000002.12 96.6 True local misassembly 94603015 94604400 93317503 93318886 NC_060926.1 NC_000002.12 97.69 True relocation, inconsistency = -1738400 92866238 92867198 93319124 93320084 NC_060926.1 NC_000002.12 98.23 True local misassembly 92865596 92866514 93321543 93322461 NC_060926.1 NC_000002.12 97.28 True relocation, inconsistency = -473134 92393602 92395245 93322683 93324324 NC_060926.1 NC_000002.12 95.01 True relocation, inconsistency = 1581901 93981000 93982134 93328178 93329313 NC_060926.1 NC_000002.12 95.33 True indel: indel (> 5bp) 93982306 93983989 93329314 93330998 NC_060926.1 NC_000002.12 97.57 True relocation, inconsistency = -964398 93020230 93020960 93331637 93332369 NC_060926.1 NC_000002.12 95.91 True relocation, inconsistency = 1077004 94097965 94098936 93332370 93333343 NC_060926.1 NC_000002.12 95.48 True relocation, inconsistency = -1642195 92456959 92458158 93333561 93334761 NC_060926.1 NC_000002.12 98.0 True indel: indel (> 5bp) 92458329 92459283 93334762 93335716 NC_060926.1 NC_000002.12 97.59 True relocation, inconsistency = 1779474 94240851 94241795 93337810 93338754 NC_060926.1 NC_000002.12 96.61 True relocation, inconsistency = 251267 94493361 94495005 93339053 93340696 NC_060926.1 NC_000002.12 96.17 True indel: indel (> 5bp) 94495006 94497564 93340864 93343419 NC_060926.1 NC_000002.12 95.27 True indel: indel (> 5bp) 94497735 94498696 93343420 93344381 NC_060926.1 NC_000002.12 96.15 True relocation, inconsistency = -1906727 92593377 92595061 93345789 93347473 NC_060926.1 NC_000002.12 96.2 True relocation, inconsistency = 387835 92983135 92984048 93347712 93348623 NC_060926.1 NC_000002.12 98.8 True relocation, inconsistency = 1577009 94565008 94565940 93352574 93353506 NC_060926.1 NC_000002.12 95.82 True relocation, inconsistency = -594271 93973813 93975010 93355650 93356847 NC_060926.1 NC_000002.12 96.49 True indel: indel (> 5bp) 93975181 93976138 93356848 93357804 NC_060926.1 NC_000002.12 96.24 True relocation, inconsistency = 78966 94058895 94059864 93361595 93362565 NC_060926.1 NC_000002.12 96.29 True relocation, inconsistency = -1353380 92713353 92714425 93369434 93370506 NC_060926.1 NC_000002.12 96.92 True local misassembly 92714426 92715207 93371017 93371799 NC_060926.1 NC_000002.12 96.55 True indel: indel (> 5bp) 92715379 92716204 93371800 93372622 NC_060926.1 NC_000002.12 95.04 True relocation, inconsistency = 1641302 94357869 94360197 93372985 93375314 NC_060926.1 NC_000002.12 96.18 True relocation, inconsistency = 139685 94507239 94508202 93382671 93383638 NC_060926.1 NC_000002.12 95.87 True relocation, inconsistency = -1645768 92864245 92865060 93385449 93386264 NC_060926.1 NC_000002.12 95.34 True local misassembly 92866917 92868095 93388119 93389297 NC_060926.1 NC_000002.12 98.05 True local misassembly 92869179 92870226 93389871 93390915 NC_060926.1 NC_000002.12 97.42 True relocation, inconsistency = -342151 92531376 92532378 93394216 93395219 NC_060926.1 NC_000002.12 97.81 True relocation, inconsistency = 228992 92761682 92762757 93395531 93396606 NC_060926.1 NC_000002.12 97.96 True local misassembly 92764310 92765579 93398160 93399429 NC_060926.1 NC_000002.12 96.77 True relocation, inconsistency = 1634388 94403756 94405629 93403218 93405089 NC_060926.1 NC_000002.12 95.04 True local misassembly 94409875 94410846 93408819 93409790 NC_060926.1 NC_000002.12 96.91 True relocation, inconsistency = -1662761 92748698 92749834 93410403 93411542 NC_060926.1 NC_000002.12 97.28 True local misassembly 92749835 92750850 93412052 93413067 NC_060926.1 NC_000002.12 97.74 True relocation, inconsistency = -130968 92624639 92625834 93417824 93419016 NC_060926.1 NC_000002.12 96.82 True relocation, inconsistency = -183805 92442034 92443910 93419021 93420897 NC_060926.1 NC_000002.12 97.76 True indel: indel (> 5bp) 92443911 92445597 93421069 93422754 NC_060926.1 NC_000002.12 95.44 True indel: indel (> 5bp) 92445768 92446952 93422755 93423940 NC_060926.1 NC_000002.12 97.89 True relocation, inconsistency = 1512080 93960229 93961162 93425137 93426070 NC_060926.1 NC_000002.12 97.43 True relocation, inconsistency = 517974 94481756 94482725 93428690 93429656 NC_060926.1 NC_000002.12 95.71 True relocation, inconsistency = -487041 93996646 93997426 93430618 93431398 NC_060926.1 NC_000002.12 98.34 True indel: indel (> 5bp) 93997598 93999218 93431399 93433017 NC_060926.1 NC_000002.12 95.43 True relocation, inconsistency = 454257 94457302 94458128 93436844 93437669 NC_060926.1 NC_000002.12 96.98 True relocation, inconsistency = -207435 94251045 94252238 93438021 93439214 NC_060926.1 NC_000002.12 95.81 True indel: indel (> 5bp) 94252410 94253408 93439215 93440213 NC_060926.1 NC_000002.12 96.4 True relocation, inconsistency = 244130 94497736 94498640 93440411 93441315 NC_060926.1 NC_000002.12 97.02 True relocation, inconsistency = -1360542 93138558 93139568 93441775 93442785 NC_060926.1 NC_000002.12 96.83 True relocation, inconsistency = 882035 94025163 94026115 93446345 93447298 NC_060926.1 NC_000002.12 96.75 True relocation, inconsistency = 464578 94490930 94493318 93447535 93449924 NC_060926.1 NC_000002.12 95.86 True relocation, inconsistency = -1620116 92873370 92874327 93450092 93451049 NC_060926.1 NC_000002.12 97.49 True relocation, inconsistency = 17834 92892401 92894134 93451289 93453026 NC_060926.1 NC_000002.12 96.95 True indel: indel (> 5bp) 92894135 92895960 93453195 93455023 NC_060926.1 NC_000002.12 97.87 True indel: indel (> 5bp) 92896131 92898000 93455024 93456893 NC_060926.1 NC_000002.12 97.97 True relocation, inconsistency = 1513923 94411924 94413538 93456894 93458507 NC_060926.1 NC_000002.12 96.41 True local misassembly 94413539 94415470 93459013 93460945 NC_060926.1 NC_000002.12 97.0 True relocation, inconsistency = 212601 94628423 94629391 93461297 93462264 NC_060926.1 NC_000002.12 96.8 True relocation, scaffold gap is present, inconsistency = -322169 94310107 94310921 93465149 93465966 NC_060926.1 NC_000002.12 97.31 True relocation, inconsistency = -76912 94235415 94236359 93467372 93468313 NC_060926.1 NC_000002.12 95.66 True relocation, inconsistency = -1403674 92832941 92834126 93468569 93469754 NC_060926.1 NC_000002.12 96.21 True relocation, inconsistency = 1456335 94291659 94292662 93470952 93471955 NC_060926.1 NC_000002.12 98.51 True local misassembly 94292663 94294529 93472465 93474332 NC_060926.1 NC_000002.12 96.57 True relocation, inconsistency = -1704891 92589639 92590827 93474333 93475525 NC_060926.1 NC_000002.12 97.15 True local misassembly 92592017 92592749 93476711 93477443 NC_060926.1 NC_000002.12 97.68 True indel: indel (> 5bp) 92592750 92593885 93477612 93478745 NC_060926.1 NC_000002.12 96.92 True relocation, inconsistency = 2009550 94603436 94604625 93478746 93479935 NC_060926.1 NC_000002.12 95.8 True indel: indel (> 5bp) 94604797 94605768 93479936 93480903 NC_060926.1 NC_000002.12 97.22 True relocation, inconsistency = 41983 94652210 94653178 93485362 93486330 NC_060926.1 NC_000002.12 97.11 True relocation, inconsistency = -403542 94251045 94253372 93487739 93490067 NC_060926.1 NC_000002.12 96.22 True relocation, inconsistency = -1185906 93067688 93069060 93490289 93491657 NC_060926.1 NC_000002.12 96.52 True relocation, inconsistency = 111112 93183721 93184727 93495206 93496216 NC_060926.1 NC_000002.12 95.05 True indel: indel (> 5bp) 93185222 93186793 93496542 93498113 NC_060926.1 NC_000002.12 97.33 True relocation, inconsistency = 1370592 94562811 94563928 93503539 93504657 NC_060926.1 NC_000002.12 95.62 True relocation, inconsistency = -347271 94217288 94218547 93505288 93506547 NC_060926.1 NC_000002.12 97.86 True fake: not a misassembly (possible transposable element) 93341218 93342189 93506769 93507738 NC_060926.1 NC_000002.12 95.88 True fake: not a misassembly (possible transposable element) 94225827 94227091 93513492 93514757 NC_060926.1 NC_000002.12 96.84 True indel: indel (> 5bp) 94227263 94227952 93514758 93515447 NC_060926.1 NC_000002.12 97.25 True local misassembly 94227953 94229809 93515958 93517814 NC_060926.1 NC_000002.12 98.12 True relocation, inconsistency = -1301074 92931342 92932304 93520421 93521383 NC_060926.1 NC_000002.12 95.64 True relocation, inconsistency = -321599 92610706 92611905 93521384 93522577 NC_060926.1 NC_000002.12 96.0 True indel: indel (> 5bp) 92612076 92612799 93522578 93523301 NC_060926.1 NC_000002.12 98.2 True indel: indel (> 5bp) 92612800 92613820 93523470 93524491 NC_060926.1 NC_000002.12 97.26 True indel: indel (> 5bp) 92613821 92615117 93524660 93525956 NC_060926.1 NC_000002.12 98.23 True indel: indel (> 5bp) 92615289 92616098 93525957 93526766 NC_060926.1 NC_000002.12 98.27 True relocation, inconsistency = 302567 92918895 92920072 93526996 93528174 NC_060926.1 NC_000002.12 95.67 True local misassembly 92922621 92923971 93530551 93531898 NC_060926.1 NC_000002.12 96.89 True relocation, inconsistency = -237332 92688932 92689830 93534191 93535089 NC_060926.1 NC_000002.12 98.0 True relocation, inconsistency = 689219 93384712 93385901 93540752 93541941 NC_060926.1 NC_000002.12 96.81 True indel: indel (> 5bp) 93386071 93387090 93541942 93542963 NC_060926.1 NC_000002.12 95.3 True relocation, inconsistency = -760583 92626674 92627862 93543130 93544318 NC_060926.1 NC_000002.12 97.06 True indel: indel (> 5bp) 92628034 92629222 93544319 93545507 NC_060926.1 NC_000002.12 97.65 True indel: indel (> 5bp) 92629394 92630364 93545508 93546480 NC_060926.1 NC_000002.12 97.64 True relocation, inconsistency = 1952455 94583037 94583618 93546698 93547280 NC_060926.1 NC_000002.12 96.91 True local misassembly 94584397 94586275 93547888 93549763 NC_060926.1 NC_000002.12 95.05 True indel: indel (> 5bp) 94586446 94587405 93549764 93550723 NC_060926.1 NC_000002.12 96.88 True relocation, inconsistency = -1961631 92626162 92627862 93551111 93552812 NC_060926.1 NC_000002.12 96.59 True indel: indel (> 5bp) 92628034 92629222 93552813 93554002 NC_060926.1 NC_000002.12 97.65 True indel: indel (> 5bp) 92629394 92631757 93554003 93556367 NC_060926.1 NC_000002.12 96.7 True indel: indel (> 5bp) 92631925 92633300 93556368 93557744 NC_060926.1 NC_000002.12 96.3 True indel: indel (> 5bp) 92633472 92634150 93557745 93558425 NC_060926.1 NC_000002.12 97.36 True local misassembly 92634151 92635155 93558934 93559938 NC_060926.1 NC_000002.12 98.21 True relocation, inconsistency = 1735103 94370455 94371407 93560135 93561087 NC_060926.1 NC_000002.12 97.38 True relocation, inconsistency = -226434 94145199 94147559 93561313 93563672 NC_060926.1 NC_000002.12 95.78 True relocation, inconsistency = -1639125 92508619 92509799 93563857 93565039 NC_060926.1 NC_000002.12 96.64 True relocation, inconsistency = 138954 92648754 92649948 93565040 93566236 NC_060926.1 NC_000002.12 97.83 True indel: indel (> 5bp) 92650120 92651766 93566237 93567880 NC_060926.1 NC_000002.12 96.78 True relocation, inconsistency = -79497 92573693 92574854 93569304 93570467 NC_060926.1 NC_000002.12 95.02 True indel: indel (> 5bp) 92574855 92575883 93570638 93571663 NC_060926.1 NC_000002.12 96.99 True indel: indel (> 5bp) 92576053 92577266 93571664 93572879 NC_060926.1 NC_000002.12 95.64 True local misassembly 92578432 92579395 93574043 93575006 NC_060926.1 NC_000002.12 97.41 True relocation, inconsistency = 261118 92840572 92841941 93575065 93576434 NC_060926.1 NC_000002.12 97.74 True indel: indel (> 5bp) 92842112 92843065 93576435 93577388 NC_060926.1 NC_000002.12 98.11 True relocation, inconsistency = -470081 92373210 92374425 93577614 93578830 NC_060926.1 NC_000002.12 96.71 True relocation, inconsistency = 915175 93290031 93290761 93579261 93579990 NC_060926.1 NC_000002.12 97.13 True relocation, inconsistency = 493071 93783833 93785548 93579991 93581710 NC_060926.1 NC_000002.12 97.33 True relocation, inconsistency = -948358 92837538 92838544 93582058 93583064 NC_060926.1 NC_000002.12 96.92 True indel: indel (> 5bp) 92838715 92839892 93583065 93584241 NC_060926.1 NC_000002.12 96.1 True indel: indel (> 5bp) 92840064 92840910 93584242 93585084 NC_060926.1 NC_000002.12 95.99 True relocation, inconsistency = 1777653 94618968 94620093 93585489 93586614 NC_060926.1 NC_000002.12 96.0 True indel: indel (> 5bp) 94620263 94622133 93586615 93588487 NC_060926.1 NC_000002.12 96.42 True indel: indel (> 5bp) 94622303 94624617 93588488 93590803 NC_060926.1 NC_000002.12 96.63 True relocation, inconsistency = -1411233 93214811 93215795 93592230 93593214 NC_060926.1 NC_000002.12 95.23 True indel: indel (> 5bp) 93216224 93217192 93593473 93594442 NC_060926.1 NC_000002.12 96.08 True indel: indel (> 5bp) 93217360 93218719 93594443 93595802 NC_060926.1 NC_000002.12 95.22 True relocation, inconsistency = -145931 93072789 93074663 93595803 93597679 NC_060926.1 NC_000002.12 96.48 True relocation, scaffold gap is present, inconsistency = 27482 93105640 93106602 93601174 93602135 NC_060926.1 NC_000002.12 95.95 True indel: indel (> 5bp) 93106774 93107961 93602136 93603323 NC_060926.1 NC_000002.12 95.96 True local misassembly 93109493 93110444 93604509 93605461 NC_060926.1 NC_000002.12 96.85 True relocation, inconsistency = -342671 92768064 92769199 93605752 93606890 NC_060926.1 NC_000002.12 97.01 True indel: indel (> 5bp) 92769371 92770341 93606891 93607858 NC_060926.1 NC_000002.12 96.5 True relocation, inconsistency = 1854468 94629784 94630728 93612833 93613777 NC_060926.1 NC_000002.12 98.2 True relocation, inconsistency = -2145807 92487553 92488727 93616409 93617582 NC_060926.1 NC_000002.12 96.77 True indel: indel (> 5bp) 92488899 92490087 93617583 93618771 NC_060926.1 NC_000002.12 97.65 True indel: indel (> 5bp) 92490259 92491447 93618772 93619962 NC_060926.1 NC_000002.12 97.06 True indel: indel (> 5bp) 92491619 92492807 93619963 93621147 NC_060926.1 NC_000002.12 96.55 True indel: indel (> 5bp) 92492979 92494090 93621148 93622254 NC_060926.1 NC_000002.12 95.41 True local misassembly 92494708 92495876 93623550 93624719 NC_060926.1 NC_000002.12 97.18 True indel: indel (> 5bp) 92496047 92497225 93624720 93625897 NC_060926.1 NC_000002.12 97.71 True relocation, inconsistency = 8673 92505899 92507087 93625898 93627086 NC_060926.1 NC_000002.12 97.22 True indel: indel (> 5bp) 92507259 92508458 93627087 93628282 NC_060926.1 NC_000002.12 96.25 True indel: indel (> 5bp) 92508629 92509710 93628283 93629365 NC_060926.1 NC_000002.12 96.95 True relocation, inconsistency = 579293 93089273 93090452 93629635 93630814 NC_060926.1 NC_000002.12 95.34 True indel: indel (> 5bp) 93090624 93091649 93630815 93631841 NC_060926.1 NC_000002.12 95.81 True indel: indel (> 5bp) 93091821 93093009 93631842 93633026 NC_060926.1 NC_000002.12 97.39 True indel: indel (> 5bp) 93093181 93094369 93633027 93634216 NC_060926.1 NC_000002.12 96.64 True indel: indel (> 5bp) 93094541 93095507 93634217 93635179 NC_060926.1 NC_000002.12 96.17 True fake: not a misassembly (possible transposable element) 94250365 94251334 93636592 93637562 NC_060926.1 NC_000002.12 95.78 True fake: not a misassembly (possible transposable element) 93098067 93099449 93637908 93639291 NC_060926.1 NC_000002.12 96.03 True relocation, inconsistency = 1305474 94407161 94408385 93641529 93642752 NC_060926.1 NC_000002.12 96.16 True local misassembly 94412604 94413598 93646971 93647966 NC_060926.1 NC_000002.12 96.18 True relocation, inconsistency = -1230561 93185613 93186786 93650542 93651715 NC_060926.1 NC_000002.12 97.02 True indel: indel (> 5bp) 93186958 93188146 93651716 93652901 NC_060926.1 NC_000002.12 95.29 True local misassembly 93190354 93191542 93655272 93656456 NC_060926.1 NC_000002.12 96.22 True indel: indel (> 5bp) 93191714 93192685 93656457 93657424 NC_060926.1 NC_000002.12 96.71 True relocation, inconsistency = 75935 93272037 93272747 93660841 93661552 NC_060926.1 NC_000002.12 97.75 True relocation, inconsistency = 1204080 94476828 94478015 93661553 93662740 NC_060926.1 NC_000002.12 95.79 True relocation, inconsistency = -1911482 92569079 92570116 93665286 93666322 NC_060926.1 NC_000002.12 97.59 True indel: indel (> 5bp) 92570287 92571248 93666323 93667285 NC_060926.1 NC_000002.12 96.47 True relocation, inconsistency = 162257 92739036 92739844 93672816 93673624 NC_060926.1 NC_000002.12 98.52 True relocation, inconsistency = 1779299 94520149 94521120 93674630 93675597 NC_060926.1 NC_000002.12 95.16 True relocation, inconsistency = -2040600 92480750 92481927 93675827 93677004 NC_060926.1 NC_000002.12 97.71 True indel: indel (> 5bp) 92482099 92483287 93677005 93678193 NC_060926.1 NC_000002.12 97.14 True indel: indel (> 5bp) 92483459 92485143 93678194 93679878 NC_060926.1 NC_000002.12 95.61 True relocation, inconsistency = 544636 93030157 93031151 93680256 93681250 NC_060926.1 NC_000002.12 95.98 True indel: indel (> 5bp) 93031323 93032290 93681251 93682213 NC_060926.1 NC_000002.12 95.66 True relocation, inconsistency = 136103 93168822 93169894 93682642 93683715 NC_060926.1 NC_000002.12 97.02 True relocation, inconsistency = 1464054 94634040 94635612 93683807 93685379 NC_060926.1 NC_000002.12 96.06 True local misassembly 94636919 94637857 93686684 93687624 NC_060926.1 NC_000002.12 95.22 True relocation, inconsistency = -1600319 93037783 93038466 93687869 93688552 NC_060926.1 NC_000002.12 98.39 True relocation, inconsistency = -569103 92469869 92471050 93689058 93690243 NC_060926.1 NC_000002.12 95.11 True indel: indel (> 5bp) 92471222 92472079 93690244 93691102 NC_060926.1 NC_000002.12 98.02 True local misassembly 92473658 92474557 93692689 93693588 NC_060926.1 NC_000002.12 97.67 True relocation, inconsistency = 1821946 94296755 94297591 93693840 93694676 NC_060926.1 NC_000002.12 98.92 True translocation, scaffold gap is present 21021480 21022189 93695486 93694777 NC_060942.1 NC_000002.12 99.72 True translocation 94276868 94278061 93695652 93696844 NC_060926.1 NC_000002.12 98.33 True relocation, inconsistency = 242264 94521520 94522473 93698039 93698992 NC_060926.1 NC_000002.12 98.01 True relocation, inconsistency = 100806 94627236 94628032 93702949 93703746 NC_060926.1 NC_000002.12 97.87 True relocation, inconsistency = -1639731 92989041 92989708 93704486 93705153 NC_060926.1 NC_000002.12 98.05 True relocation, inconsistency = -58593 92931319 92932304 93705357 93706341 NC_060926.1 NC_000002.12 95.84 True indel: indel (> 5bp) 92932476 92933446 93706342 93707314 NC_060926.1 NC_000002.12 97.02 True relocation, inconsistency = 1508344 94443192 94444135 93708716 93709656 NC_060926.1 NC_000002.12 97.46 True relocation, inconsistency = 32449 94476830 94478011 93709902 93711081 NC_060926.1 NC_000002.12 96.36 True indel: indel (> 5bp) 94478183 94479376 93711082 93712272 NC_060926.1 NC_000002.12 97.4 True indel: indel (> 5bp) 94479548 94480548 93712273 93713276 NC_060926.1 NC_000002.12 96.81 True relocation, inconsistency = 153803 94634538 94635706 93713463 93714628 NC_060926.1 NC_000002.12 95.3 True relocation, inconsistency = -1062475 93574435 93575338 93715832 93716733 NC_060926.1 NC_000002.12 95.58 True local misassembly 93577177 93578346 93718237 93719408 NC_060926.1 NC_000002.12 97.53 True indel: indel (> 5bp) 93578517 93579473 93719409 93720366 NC_060926.1 NC_000002.12 95.93 True fake: not a misassembly (possible transposable element) 94578957 94580145 93720588 93721776 NC_060926.1 NC_000002.12 95.12 True fake: not a misassembly (possible transposable element) 93581900 93583086 93722962 93724150 NC_060926.1 NC_000002.12 98.15 True indel: indel (> 5bp) 93583258 93585130 93724151 93726027 NC_060926.1 NC_000002.12 96.86 True relocation, inconsistency = 32938 93619283 93620441 93727242 93728400 NC_060926.1 NC_000002.12 98.45 True indel: indel (> 5bp) 93620613 93621800 93728401 93729589 NC_060926.1 NC_000002.12 95.21 True local misassembly 93624691 93625853 93731968 93733126 NC_060926.1 NC_000002.12 96.22 True local misassembly 93626389 93627355 93734343 93735306 NC_060926.1 NC_000002.12 96.28 True relocation, inconsistency = -308270 93320499 93321470 93736720 93737687 NC_060926.1 NC_000002.12 95.68 True relocation, inconsistency = -187390 93134299 93135160 93737906 93738761 NC_060926.1 NC_000002.12 96.4 True indel: indel (> 5bp) 93135331 93136531 93738762 93739963 NC_060926.1 NC_000002.12 97.75 True local misassembly 93138558 93141611 93742505 93745559 NC_060926.1 NC_000002.12 95.25 True local misassembly 93141949 93142601 93745560 93746212 NC_060926.1 NC_000002.12 97.7 True relocation, inconsistency = 1132210 94274829 94276689 93746230 93748086 NC_060926.1 NC_000002.12 95.97 True indel: indel (> 5bp) 94276861 94278054 93748087 93749281 NC_060926.1 NC_000002.12 96.99 True local misassembly 94279927 94281620 93750645 93752339 NC_060926.1 NC_000002.12 95.22 True relocation, inconsistency = -202680 94078941 94080809 93752340 93754209 NC_060926.1 NC_000002.12 95.56 True indel: indel (> 5bp) 94080981 94081789 93754210 93755022 NC_060926.1 NC_000002.12 97.79 True relocation, inconsistency = -1278299 92812878 92814054 93764410 93765587 NC_060926.1 NC_000002.12 95.25 True indel: indel (> 5bp) 92814226 92815192 93765588 93766550 NC_060926.1 NC_000002.12 96.07 True relocation, inconsistency = 1712221 94533079 94534256 93772216 93773392 NC_060926.1 NC_000002.12 95.16 True relocation, inconsistency = -1577648 92956609 92957631 93773393 93774410 NC_060926.1 NC_000002.12 95.31 True indel: indel (> 5bp) 92957799 92959040 93774411 93775656 NC_060926.1 NC_000002.12 95.1 True indel: indel (> 5bp) 92959041 92960330 93775825 93777115 NC_060926.1 NC_000002.12 97.83 True relocation, inconsistency = 1531262 94491593 94492118 93777116 93777641 NC_060926.1 NC_000002.12 95.07 True relocation, inconsistency = -1018828 93474489 93475660 93778840 93780014 NC_060926.1 NC_000002.12 95.32 True local misassembly 93476848 93478035 93781199 93782383 NC_060926.1 NC_000002.12 97.39 True local misassembly 93478543 93479507 93782384 93783349 NC_060926.1 NC_000002.12 97.41 True relocation, inconsistency = -267637 93212286 93213280 93783765 93784763 NC_060926.1 NC_000002.12 95.6 True relocation, inconsistency = -61315 93151966 93153154 93784764 93785948 NC_060926.1 NC_000002.12 96.22 True fake: not a misassembly (possible transposable element) 94437753 94438757 93785949 93786949 NC_060926.1 NC_000002.12 96.42 True fake: not a misassembly (possible transposable element) 93154538 93155539 93787328 93788329 NC_060926.1 NC_000002.12 96.61 True relocation, inconsistency = 538429 93694189 93695161 93788550 93789522 NC_060926.1 NC_000002.12 97.33 True indel: indel (> 5bp) 93695332 93696510 93789523 93790700 NC_060926.1 NC_000002.12 95.25 True local misassembly 93698039 93699854 93791891 93793710 NC_060926.1 NC_000002.12 96.7 True indel: indel (> 5bp) 93699855 93700587 93793878 93794610 NC_060926.1 NC_000002.12 98.09 True relocation, inconsistency = -128192 93572793 93573925 93795008 93796143 NC_060926.1 NC_000002.12 97.18 True relocation, inconsistency = -943849 92630280 92631945 93796347 93798012 NC_060926.1 NC_000002.12 95.74 True indel: indel (> 5bp) 92632117 92633300 93798013 93799191 NC_060926.1 NC_000002.12 98.31 True indel: indel (> 5bp) 92633472 92634671 93799192 93800388 NC_060926.1 NC_000002.12 95.42 True indel: indel (> 5bp) 92634842 92635798 93800389 93801348 NC_060926.1 NC_000002.12 97.08 True relocation, inconsistency = 1771979 94415312 94417017 93808883 93810590 NC_060926.1 NC_000002.12 96.96 True relocation, inconsistency = -1096682 93320499 93321470 93810754 93811721 NC_060926.1 NC_000002.12 96.3 True relocation, inconsistency = 973692 94295395 94296333 93811954 93812892 NC_060926.1 NC_000002.12 98.83 True relocation, inconsistency = -1420490 92876080 92877385 93813129 93814435 NC_060926.1 NC_000002.12 97.48 True relocation, inconsistency = 450528 93331723 93332908 93818245 93819430 NC_060926.1 NC_000002.12 95.03 True relocation, inconsistency = -54033 93283137 93284303 93823692 93824854 NC_060926.1 NC_000002.12 95.37 True local misassembly 93285845 93287023 93826051 93827229 NC_060926.1 NC_000002.12 96.18 True relocation, inconsistency = 1063038 94357192 94358152 93834360 93835323 NC_060926.1 NC_000002.12 96.89 True relocation, inconsistency = -1155457 93202937 93203601 93835565 93836229 NC_060926.1 NC_000002.12 97.29 True indel: indel (> 5bp) 93203602 93204801 93836397 93837593 NC_060926.1 NC_000002.12 96.67 True indel: indel (> 5bp) 93204972 93206150 93837594 93838772 NC_060926.1 NC_000002.12 96.61 True relocation, inconsistency = 357763 93563914 93565112 93838773 93839972 NC_060926.1 NC_000002.12 96.58 True indel: indel (> 5bp) 93565283 93566483 93839973 93841174 NC_060926.1 NC_000002.12 97.5 True relocation, inconsistency = -131696 93435955 93437146 93842342 93843530 NC_060926.1 NC_000002.12 96.73 True relocation, inconsistency = -382028 93055119 93056303 93843531 93844715 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 93056475 93057445 93844716 93845687 NC_060926.1 NC_000002.12 97.02 True relocation, inconsistency = 1113876 94172742 94173694 93847108 93848060 NC_060926.1 NC_000002.12 97.38 True relocation, inconsistency = 485604 94660708 94661676 93849470 93850435 NC_060926.1 NC_000002.12 96.7 True relocation, inconsistency = -226693 94436555 94438261 93852007 93853711 NC_060926.1 NC_000002.12 95.78 True indel: indel (> 5bp) 94438433 94439396 93853712 93854675 NC_060926.1 NC_000002.12 96.99 True fake: not a misassembly (possible transposable element) 93304870 93305836 93854901 93855866 NC_060926.1 NC_000002.12 98.35 True fake: not a misassembly (possible transposable element) 94441947 94442846 93857393 93858292 NC_060926.1 NC_000002.12 95.22 True relocation, inconsistency = -1134756 93308334 93309457 93858536 93859659 NC_060926.1 NC_000002.12 97.86 True local misassembly 93310476 93311493 93860507 93861524 NC_060926.1 NC_000002.12 96.95 True indel: indel (> 5bp) 93311665 93312679 93861525 93862535 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 93312846 93313481 93862536 93863171 NC_060926.1 NC_000002.12 98.27 True local misassembly 93313820 93314561 93863172 93863913 NC_060926.1 NC_000002.12 97.57 True indel: indel (> 5bp) 93314732 93315692 93863914 93864875 NC_060926.1 NC_000002.12 96.67 True relocation, inconsistency = 1200162 94516072 94517723 93865093 93866749 NC_060926.1 NC_000002.12 95.53 True relocation, inconsistency = -1451616 93066170 93067516 93866812 93868159 NC_060926.1 NC_000002.12 95.92 True indel: indel (> 5bp) 93067688 93068876 93868160 93869347 NC_060926.1 NC_000002.12 97.9 True indel: indel (> 5bp) 93069048 93070069 93869348 93870369 NC_060926.1 NC_000002.12 96.09 True indel: indel (> 5bp) 93070237 93071378 93870370 93871512 NC_060926.1 NC_000002.12 96.76 True relocation, inconsistency = -520863 92550733 92551932 93871730 93872930 NC_060926.1 NC_000002.12 97.92 True indel: indel (> 5bp) 92552103 92552782 93872931 93873612 NC_060926.1 NC_000002.12 97.51 True local misassembly 92552783 92553960 93874123 93875304 NC_060926.1 NC_000002.12 97.63 True local misassembly 92555206 92556121 93876547 93877460 NC_060926.1 NC_000002.12 96.4 True relocation, inconsistency = 495033 93051677 93052562 93877983 93878870 NC_060926.1 NC_000002.12 97.3 True local misassembly 93053769 93054950 93880071 93881252 NC_060926.1 NC_000002.12 95.26 True relocation, inconsistency = 568557 93624719 93625879 93882464 93883620 NC_060926.1 NC_000002.12 97.5 True relocation, inconsistency = -745725 92880155 92881005 93883621 93884467 NC_060926.1 NC_000002.12 96.59 True local misassembly 92881853 92882820 93884806 93885769 NC_060926.1 NC_000002.12 96.38 True relocation, inconsistency = 1581382 94465615 94466447 93887182 93888005 NC_060926.1 NC_000002.12 95.32 True indel: indel (> 5bp) 94466448 94467308 93888175 93889035 NC_060926.1 NC_000002.12 95.24 True indel: indel (> 5bp) 94467476 94468598 93889036 93890159 NC_060926.1 NC_000002.12 96.44 True relocation, inconsistency = -1578157 92890701 92891703 93890419 93891425 NC_060926.1 NC_000002.12 95.43 True local misassembly 92893064 92893834 93892782 93893553 NC_060926.1 NC_000002.12 98.45 True relocation, inconsistency = 270457 93168841 93169815 93898103 93899077 NC_060926.1 NC_000002.12 96.82 True indel: indel (> 5bp) 93169986 93171162 93899078 93900254 NC_060926.1 NC_000002.12 95.41 True indel: indel (> 5bp) 93171333 93172521 93900255 93901445 NC_060926.1 NC_000002.12 95.47 True fake: not a misassembly (possible transposable element) 92796206 92798206 93901446 93903442 NC_060926.1 NC_000002.12 95.85 True fake: not a misassembly (possible transposable element) 93174352 93175249 93903615 93904512 NC_060926.1 NC_000002.12 97.77 True indel: indel (> 5bp) 93175420 93176373 93904513 93905466 NC_060926.1 NC_000002.12 97.9 True relocation, inconsistency = -376317 92800477 92801470 93905887 93906880 NC_060926.1 NC_000002.12 96.98 True relocation, inconsistency = 1643759 94445230 94447099 93906881 93908751 NC_060926.1 NC_000002.12 95.03 True local misassembly 94449986 94450904 93911131 93912051 NC_060926.1 NC_000002.12 95.77 True relocation, inconsistency = -1476916 92974258 92975445 93912321 93913502 NC_060926.1 NC_000002.12 96.63 True indel: indel (> 5bp) 92975617 92976387 93913503 93914269 NC_060926.1 NC_000002.12 95.59 True relocation, inconsistency = 88673 93065278 93066157 93914487 93915366 NC_060926.1 NC_000002.12 98.52 True indel: indel (> 5bp) 93066329 93067276 93915367 93916314 NC_060926.1 NC_000002.12 98.0 True relocation, inconsistency = 310401 93377919 93378581 93916556 93917214 NC_060926.1 NC_000002.12 96.08 True relocation, inconsistency = -612289 92768065 92769199 93918987 93920120 NC_060926.1 NC_000002.12 98.15 True indel: indel (> 5bp) 92769371 92770190 93920121 93920937 NC_060926.1 NC_000002.12 96.22 True relocation, scaffold gap is present, inconsistency = 176367 92949586 92950265 93923966 93924644 NC_060926.1 NC_000002.12 98.09 True local misassembly 92951171 92952373 93925038 93926241 NC_060926.1 NC_000002.12 95.1 True indel: indel (> 5bp) 92952374 92953377 93926414 93927416 NC_060926.1 NC_000002.12 96.61 True relocation, inconsistency = 1015844 93970414 93972095 93928609 93930288 NC_060926.1 NC_000002.12 96.61 True relocation, inconsistency = 403265 94382848 94383987 93937776 93938915 NC_060926.1 NC_000002.12 96.93 True relocation, inconsistency = -1632168 92752040 92752890 93939136 93939986 NC_060926.1 NC_000002.12 98.24 True relocation, inconsistency = 486045 93239052 93240067 93940103 93941118 NC_060926.1 NC_000002.12 95.67 True relocation, inconsistency = 716530 93957840 93959708 93942361 93944230 NC_060926.1 NC_000002.12 95.19 True local misassembly 93960898 93961555 93945422 93946075 NC_060926.1 NC_000002.12 95.44 True relocation, inconsistency = -775467 93186958 93188308 93946945 93948291 NC_060926.1 NC_000002.12 95.71 True local misassembly 93189390 93190367 93949375 93950361 NC_060926.1 NC_000002.12 95.34 True indel: indel (> 5bp) 93190368 93191542 93950529 93951704 NC_060926.1 NC_000002.12 97.9 True relocation, inconsistency = -564869 92626674 92629222 93951705 93954254 NC_060926.1 NC_000002.12 96.75 True indel: indel (> 5bp) 92629394 92630360 93954255 93955222 NC_060926.1 NC_000002.12 96.38 True relocation, inconsistency = -146433 92490259 92491447 93961554 93962743 NC_060926.1 NC_000002.12 98.57 True indel: indel (> 5bp) 92491619 92492807 93962744 93963928 NC_060926.1 NC_000002.12 97.06 True indel: indel (> 5bp) 92492977 92494174 93963929 93965126 NC_060926.1 NC_000002.12 97.58 True relocation, inconsistency = 419279 92913454 92914216 93965127 93965889 NC_060926.1 NC_000002.12 99.35 True relocation, inconsistency = 1753208 94667843 94668464 93966308 93966925 NC_060926.1 NC_000002.12 95.67 True relocation, inconsistency = -1339868 93330579 93331530 93968908 93969863 NC_060926.1 NC_000002.12 95.29 True relocation, inconsistency = 1241985 94573713 94574488 93970061 93970837 NC_060926.1 NC_000002.12 95.88 True relocation, inconsistency = -2080031 92494677 92495865 93971057 93972241 NC_060926.1 NC_000002.12 96.89 True indel: indel (> 5bp) 92496037 92497684 93972242 93973888 NC_060926.1 NC_000002.12 95.63 True relocation, inconsistency = 694488 93192394 93193588 93974110 93975307 NC_060926.1 NC_000002.12 96.83 True relocation, inconsistency = -93605 93100149 93101166 93975473 93976490 NC_060926.1 NC_000002.12 98.13 True indel: indel (> 5bp) 93101338 93102533 93976491 93977683 NC_060926.1 NC_000002.12 97.16 True relocation, inconsistency = -82584 93021132 93022343 93978866 93980077 NC_060926.1 NC_000002.12 95.96 True relocation, inconsistency = 236666 93259010 93260123 93980078 93981192 NC_060926.1 NC_000002.12 96.4 True indel: indel (> 5bp) 93260124 93261196 93981361 93982434 NC_060926.1 NC_000002.12 96.74 True relocation, inconsistency = 300851 93563460 93564428 93983847 93984816 NC_060926.1 NC_000002.12 95.46 True relocation, inconsistency = -728265 92837653 92838532 93986306 93987184 NC_060926.1 NC_000002.12 98.18 True local misassembly 92840824 92841930 93989639 93990746 NC_060926.1 NC_000002.12 97.65 True indel: indel (> 5bp) 92842102 92843073 93990747 93991714 NC_060926.1 NC_000002.12 96.71 True relocation, inconsistency = 340444 93185599 93187125 93993796 93995322 NC_060926.1 NC_000002.12 97.84 True indel: indel (> 5bp) 93187297 93188308 93995323 93996333 NC_060926.1 NC_000002.12 95.65 True indel: indel (> 5bp) 93188480 93189335 93996334 93997193 NC_060926.1 NC_000002.12 95.58 True local misassembly 93190354 93191554 93998554 93999750 NC_060926.1 NC_000002.12 95.34 True relocation, inconsistency = -13758 93177797 93178856 93999751 94000814 NC_060926.1 NC_000002.12 95.39 True indel: indel (> 5bp) 93178857 93180154 94000983 94002280 NC_060926.1 NC_000002.12 97.15 True indel: indel (> 5bp) 93180326 93181135 94002281 94003090 NC_060926.1 NC_000002.12 98.52 True relocation, inconsistency = 910501 94091854 94092606 94003308 94004063 NC_060926.1 NC_000002.12 97.49 True relocation, inconsistency = -1328934 92768069 92769199 94008460 94009590 NC_060926.1 NC_000002.12 99.03 True relocation, inconsistency = 352527 93121727 93122914 94009591 94010778 NC_060926.1 NC_000002.12 96.13 True indel: indel (> 5bp) 93123086 93124274 94010779 94011968 NC_060926.1 NC_000002.12 97.82 True relocation, scaffold gap is present, inconsistency = 119250 93246915 93247936 94015359 94016376 NC_060926.1 NC_000002.12 96.97 True relocation, inconsistency = 85811 93333748 93334410 94016377 94017038 NC_060926.1 NC_000002.12 96.98 True relocation, inconsistency = -555032 92779905 92781093 94017565 94018749 NC_060926.1 NC_000002.12 95.63 True relocation, inconsistency = 1399794 94181296 94182076 94019158 94019939 NC_060926.1 NC_000002.12 97.57 True indel: indel (> 5bp) 94182248 94183107 94019940 94020800 NC_060926.1 NC_000002.12 97.44 True local misassembly 94183108 94184115 94021311 94022317 NC_060926.1 NC_000002.12 96.23 True local misassembly 94185304 94186491 94023503 94024687 NC_060926.1 NC_000002.12 95.96 True indel: indel (> 5bp) 94186663 94188313 94024688 94026338 NC_060926.1 NC_000002.12 98.3 True relocation, inconsistency = -702186 93487535 93488726 94027746 94028939 NC_060926.1 NC_000002.12 97.24 True relocation, inconsistency = -178414 93310425 93311505 94029052 94030133 NC_060926.1 NC_000002.12 96.67 True relocation, inconsistency = 265654 93577163 93578346 94030137 94031328 NC_060926.1 NC_000002.12 97.15 True relocation, inconsistency = 1037340 94615691 94616865 94031333 94032506 NC_060926.1 NC_000002.12 95.23 True indel: indel (> 5bp) 94617037 94618005 94032507 94033475 NC_060926.1 NC_000002.12 98.56 True relocation, inconsistency = -1565655 93053862 93054943 94034987 94036068 NC_060926.1 NC_000002.12 95.47 True indel: indel (> 5bp) 93055115 93056314 94036069 94037268 NC_060926.1 NC_000002.12 96.0 True indel: indel (> 5bp) 93056485 93057037 94037269 94037822 NC_060926.1 NC_000002.12 98.01 True fake: not a misassembly (possible transposable element) 92554132 92555307 94039632 94040809 NC_060926.1 NC_000002.12 95.59 True fake: not a misassembly (possible transposable element) 93059536 93060506 94040821 94041788 NC_060926.1 NC_000002.12 96.6 True relocation, inconsistency = -504214 92556510 92558389 94042006 94043885 NC_060926.1 NC_000002.12 96.22 True indel: indel (> 5bp) 92558560 92559552 94043886 94044880 NC_060926.1 NC_000002.12 96.98 True relocation, inconsistency = 182634 92748698 92749318 94051392 94052012 NC_060926.1 NC_000002.12 97.91 True relocation, inconsistency = 1847143 94596647 94598320 94052198 94053875 NC_060926.1 NC_000002.12 95.65 True relocation, inconsistency = -35524 94563002 94563922 94054081 94055001 NC_060926.1 NC_000002.12 98.91 True local misassembly 94567734 94568710 94058807 94059784 NC_060926.1 NC_000002.12 95.5 True relocation, inconsistency = -1847272 92722902 92723701 94061248 94062047 NC_060926.1 NC_000002.12 97.25 True relocation, inconsistency = 298460 93024869 93026064 94064755 94065946 NC_060926.1 NC_000002.12 95.51 True relocation, inconsistency = -51800 92974265 92975370 94065947 94067053 NC_060926.1 NC_000002.12 98.56 True relocation, inconsistency = -226464 92748982 92749949 94067129 94068096 NC_060926.1 NC_000002.12 98.55 True relocation, inconsistency = 1770828 94522189 94522752 94069508 94070067 NC_060926.1 NC_000002.12 95.92 True local misassembly 94524229 94525198 94071883 94072848 NC_060926.1 NC_000002.12 95.98 True relocation, inconsistency = -488264 94039529 94040257 94075443 94076167 NC_060926.1 NC_000002.12 95.88 True local misassembly 94041569 94042409 94077474 94078313 NC_060926.1 NC_000002.12 96.67 True local misassembly 94044296 94045123 94079860 94080687 NC_060926.1 NC_000002.12 96.98 True relocation, inconsistency = 98363 94146555 94149113 94083756 94086318 NC_060926.1 NC_000002.12 95.55 True relocation, inconsistency = -1442906 92706251 92708066 94086362 94088176 NC_060926.1 NC_000002.12 95.26 True indel: indel (> 5bp) 92708238 92709259 94088177 94089198 NC_060926.1 NC_000002.12 95.11 True indel: indel (> 5bp) 92709260 92710447 94089366 94090557 NC_060926.1 NC_000002.12 96.64 True relocation, scaffold gap is present, inconsistency = 1872782 94633230 94637818 94140558 94145146 NC_060926.1 NC_000002.12 99.54 True local misassembly 94637819 94639703 94145489 94147373 NC_060926.1 NC_000002.12 98.51 True local misassembly 94640383 94641398 94147374 94148389 NC_060926.1 NC_000002.12 97.05 True local misassembly 94641399 94643847 94148728 94151179 NC_060926.1 NC_000002.12 96.21 True local misassembly 94643848 94644497 94151518 94152167 NC_060926.1 NC_000002.12 97.23 True local misassembly 94645178 94646158 94152168 94153148 NC_060926.1 NC_000002.12 97.15 True local misassembly 94646497 94649216 94153149 94155868 NC_060926.1 NC_000002.12 98.68 True local misassembly 94654653 94662060 94155869 94163275 NC_060926.1 NC_000002.12 99.62 True local misassembly 94667156 94668947 94163276 94165067 NC_060926.1 NC_000002.12 99.67 True local misassembly 94669628 94671519 94165068 94166960 NC_060926.1 NC_000002.12 99.84 True local misassembly 94672876 94779198 94166961 94273270 NC_060926.1 NC_000002.12 99.92 True local misassembly 94779199 94798700 94273533 94293015 NC_060926.1 NC_000002.12 99.85 True fake: scaffold gap size wrong estimation (local) 95002877 96306795 94496016 95800190 NC_060926.1 NC_000002.12 99.94 True relocation, inconsistency = -40089 96306796 96531014 96024404 95800191 NC_060926.1 NC_000002.12 99.67 True inversion 96531015 97854564 96024405 97347936 NC_060926.1 NC_000002.12 99.91 True local misassembly 97867083 97946808 97360455 97439618 NC_060926.1 NC_000002.12 99.13 True relocation, scaffold gap is present, inconsistency = -48968 97947841 110391825 97489619 109930189 NC_060926.1 NC_000002.12 99.76 True inversion 110517535 110863789 110276210 109930190 NC_060926.1 NC_000002.12 99.68 True relocation, inconsistency = -165231 110698559 121460462 110276211 121024541 NC_060926.1 NC_000002.12 99.61 True indel: indel (> 5bp) 121460778 130490692 121024863 130061123 NC_060926.1 NC_000002.12 99.58 True local misassembly 130491973 130494233 130062764 130065034 NC_060926.1 NC_000002.12 96.13 True local misassembly 130494999 130993817 130067131 130559915 NC_060926.1 NC_000002.12 98.54 True fake: not a misassembly (possible transposable element) 130993818 130994725 130560826 130559916 NC_060926.1 NC_000002.12 99.67 True fake: not a misassembly (possible transposable element) 130994726 132206544 130560827 131771055 NC_060926.1 NC_000002.12 99.6 True indel: indel (> 5bp) 132206905 138693158 131771310 138247429 NC_060926.1 NC_000002.12 99.64 True local misassembly 138696748 170218394 138251019 169738812 NC_060926.1 NC_000002.12 99.63 True indel: indel (> 5bp) 170218511 192187524 169738946 191699303 NC_060926.1 NC_000002.12 99.64 True indel: indel (> 5bp) 192187813 224911417 191699614 224428234 NC_060926.1 NC_000002.12 99.6 True local misassembly 224911523 229666672 224429235 229184015 NC_060926.1 NC_000002.12 99.71 True indel: indel (> 5bp) 229666676 232063396 229184114 231578973 NC_060926.1 NC_000002.12 99.75 True local misassembly 232064051 233664083 231579614 233176494 NC_060926.1 NC_000002.12 99.37 True local misassembly 233664864 239360793 233176607 238870131 NC_060926.1 NC_000002.12 99.57 True local misassembly 239361979 239394619 238870806 238903659 NC_060926.1 NC_000002.12 99.04 True fake: scaffold gap size wrong estimation (local) 239394757 240134438 238904061 239643108 NC_060926.1 NC_000002.12 99.27 True indel: indel (> 5bp) 240134660 241182697 239643442 240685789 NC_060926.1 NC_000002.12 98.89 True local misassembly 241185875 242693499 240688967 242182779 NC_060926.1 NC_000002.12 97.86 True CONTIG NC_000002.12 242193529 misassembled 92308910 92311062 3 2161 NC_060926.1 NT_187370.1 96.2 True local misassembly 92313739 92315835 4483 6583 NC_060926.1 NT_187370.1 96.1 True local misassembly 92317085 92325263 7149 15327 NC_060926.1 NT_187370.1 99.54 True local misassembly 92330033 92338491 15328 23786 NC_060926.1 NT_187370.1 99.6 True relocation, inconsistency = 216948 92555440 92556421 23787 24765 NC_060926.1 NT_187370.1 96.12 True relocation, inconsistency = 2112685 94670283 94671611 25942 27269 NC_060926.1 NT_187370.1 96.7 True local misassembly 94669918 94671795 27270 29151 NC_060926.1 NT_187370.1 95.75 True relocation, inconsistency = -10186 94661952 94663988 29494 31529 NC_060926.1 NT_187370.1 95.14 True local misassembly 94663989 94666771 31872 34654 NC_060926.1 NT_187370.1 97.13 True local misassembly 94662307 94663233 34776 35701 NC_060926.1 NT_187370.1 95.69 True relocation, inconsistency = -116077 94548419 94553754 36964 42300 NC_060926.1 NT_187370.1 95.93 True relocation, inconsistency = 108434 94662307 94663233 42419 43344 NC_060926.1 NT_187370.1 95.69 True relocation, inconsistency = -2317060 92347880 92354328 45051 51498 NC_060926.1 NT_187370.1 96.81 True relocation, inconsistency = 1602987 93957489 93959264 51672 53447 NC_060926.1 NT_187370.1 95.67 True relocation, inconsistency = 204355 94163620 94168362 53448 58191 NC_060926.1 NT_187370.1 95.87 True relocation, inconsistency = 412349 94580712 94589982 58192 67463 NC_060926.1 NT_187370.1 95.93 True relocation, inconsistency = -173839 94418427 94425400 69747 76719 NC_060926.1 NT_187370.1 95.67 True relocation, inconsistency = -659349 93766052 93775893 76720 86560 NC_060926.1 NT_187370.1 95.72 True relocation, inconsistency = -7134 93768760 93778132 86561 95936 NC_060926.1 NT_187370.1 97.21 True relocation, inconsistency = -1421504 92356642 92362141 95950 101448 NC_060926.1 NT_187370.1 97.11 True local misassembly 92359084 92360518 101449 102883 NC_060926.1 NT_187370.1 96.58 True local misassembly 92362901 92363749 102884 103732 NC_060926.1 NT_187370.1 96.69 True local misassembly 92356950 92363057 103733 109840 NC_060926.1 NT_187370.1 97.32 True relocation, inconsistency = 2244162 94607220 94618687 109841 121307 NC_060926.1 NT_187370.1 96.58 True relocation, inconsistency = -2262179 92356781 92361878 121580 126677 NC_060926.1 NT_187370.1 97.0 True local misassembly 92356781 92362777 126678 132673 NC_060926.1 NT_187370.1 97.0 True relocation, inconsistency = 1861868 94224787 94225314 132815 133342 NC_060926.1 NT_187370.1 97.92 True relocation, inconsistency = -1841135 92384284 92391995 133447 141158 NC_060926.1 NT_187370.1 97.67 True local misassembly 92386557 92388282 141159 142884 NC_060926.1 NT_187370.1 98.26 True relocation, inconsistency = 275883 92664166 92667455 142885 146181 NC_060926.1 NT_187370.1 97.21 True local misassembly 92667456 92676906 146520 155970 NC_060926.1 NT_187370.1 96.39 True relocation, inconsistency = 1110950 93787857 93793352 155971 161466 NC_060926.1 NT_187370.1 96.83 True CONTIG NT_187370.1 161471 misassembled 92286197 92445083 1 153799 NC_060926.1 NT_187371.1 95.04 True CONTIG NT_187371.1 153799 correct 2321 1702026 10827 1708126 NC_060927.1 NC_000003.12 99.51 True local misassembly 1702504 6603256 1708398 6608473 NC_060927.1 NC_000003.12 99.53 True local misassembly 6603328 16930312 6612951 16929064 NC_060927.1 NC_000003.12 99.59 True indel: indel (> 5bp) 16930458 20305193 16929216 20301190 NC_060927.1 NC_000003.12 99.76 True local misassembly 20310059 44715215 20301488 44699521 NC_060927.1 NC_000003.12 99.61 True fake: not a misassembly (possible transposable element) 44715216 44716464 44700770 44699522 NC_060927.1 NC_000003.12 100.0 True fake: not a misassembly (possible transposable element) 44716465 45149361 44700771 45133491 NC_060927.1 NC_000003.12 99.86 True local misassembly 45150161 60027870 45133740 59986510 NC_060927.1 NC_000003.12 99.62 True indel: indel (> 5bp) 60028142 75588235 59986696 75534452 NC_060927.1 NC_000003.12 99.6 True local misassembly 75588310 80069727 75534896 80013716 NC_060927.1 NC_000003.12 99.65 True local misassembly 80069900 90808191 80015320 90722401 NC_060927.1 NC_000003.12 99.24 True fake: scaffold gap size wrong estimation (local) 90888129 90940008 90798272 90850168 NC_060927.1 NC_000003.12 95.66 True local misassembly 90940009 90946094 90851019 90857104 NC_060927.1 NC_000003.12 96.3 True local misassembly 90946095 90949353 90858805 90862063 NC_060927.1 NC_000003.12 96.29 True local misassembly 90949354 90954348 90863762 90868759 NC_060927.1 NC_000003.12 96.16 True local misassembly 90954349 90956241 90870459 90872351 NC_060927.1 NC_000003.12 96.2 True local misassembly 90956242 90960057 90874051 90877867 NC_060927.1 NC_000003.12 97.17 True local misassembly 90960058 90969470 90879566 90888980 NC_060927.1 NC_000003.12 96.22 True local misassembly 90969471 90973954 90890680 90895163 NC_060927.1 NC_000003.12 96.12 True local misassembly 90974372 90975013 90898131 90898772 NC_060927.1 NC_000003.12 97.04 True local misassembly 90975014 90986928 90900471 90912390 NC_060927.1 NC_000003.12 95.87 True local misassembly 90987321 90994927 90916183 90923794 NC_060927.1 NC_000003.12 96.31 True local misassembly 90994928 91028277 90925493 90958845 NC_060927.1 NC_000003.12 96.11 True local misassembly 91028278 91033244 90960546 90965513 NC_060927.1 NC_000003.12 95.57 True local misassembly 91033245 91050717 90967212 90984687 NC_060927.1 NC_000003.12 95.96 True local misassembly 91050718 91054262 90986387 90989932 NC_060927.1 NC_000003.12 97.29 True local misassembly 91054263 91062799 90991631 91000169 NC_060927.1 NC_000003.12 96.23 True local misassembly 91062800 91068805 91003569 91009575 NC_060927.1 NC_000003.12 95.85 True local misassembly 91068806 91070209 91010425 91011829 NC_060927.1 NC_000003.12 97.94 True local misassembly 91070210 91073635 91013528 91016952 NC_060927.1 NC_000003.12 96.47 True local misassembly 91073636 91081644 91018652 91026668 NC_060927.1 NC_000003.12 96.0 True local misassembly 91081645 91082650 91028363 91029368 NC_060927.1 NC_000003.12 97.12 True local misassembly 91082651 91087139 91031068 91035557 NC_060927.1 NC_000003.12 95.9 True local misassembly 91087140 91090238 91037256 91040355 NC_060927.1 NC_000003.12 96.48 True local misassembly 91090239 91091444 91041205 91042410 NC_060927.1 NC_000003.12 96.77 True local misassembly 91091445 91093503 91044110 91046169 NC_060927.1 NC_000003.12 95.78 True local misassembly 91093973 91100742 91050035 91056803 NC_060927.1 NC_000003.12 96.12 True local misassembly 91100743 91101248 91058505 91059010 NC_060927.1 NC_000003.12 95.65 True local misassembly 91101249 91103680 91060708 91063139 NC_060927.1 NC_000003.12 95.81 True local misassembly 91103681 91108553 91064839 91069709 NC_060927.1 NC_000003.12 95.61 True local misassembly 91108554 91123544 91073109 91088108 NC_060927.1 NC_000003.12 95.81 True local misassembly 91123545 91126510 91090658 91093624 NC_060927.1 NC_000003.12 96.39 True local misassembly 91126511 91131605 91095325 91100421 NC_060927.1 NC_000003.12 95.47 True local misassembly 91131606 91138292 91102121 91108812 NC_060927.1 NC_000003.12 96.01 True local misassembly 91138293 91141654 91110511 91113872 NC_060927.1 NC_000003.12 95.36 True relocation, inconsistency = -33986 91141655 91142438 91147859 91148644 NC_060927.1 NC_000003.12 96.06 True fake: scaffold gap size wrong estimation (extensive) 91231964 91234006 91247789 91249831 NC_060927.1 NC_000003.12 95.35 True fake: scaffold gap size wrong estimation (local) 91263037 91263913 91277037 91277912 NC_060927.1 NC_000003.12 95.44 True local misassembly 91265613 91269486 91277913 91281790 NC_060927.1 NC_000003.12 95.49 True relocation, scaffold gap is present, inconsistency = 206447 91478965 91485213 91284822 91291069 NC_060927.1 NC_000003.12 99.86 True fake: scaffold gap size wrong estimation (local) 91485258 91539118 91291219 91345078 NC_060927.1 NC_000003.12 99.95 True fake: scaffold gap size wrong estimation (local) 91539358 91750626 91345174 91552687 NC_060927.1 NC_000003.12 97.44 True relocation, inconsistency = 7133 91757760 91758389 91552688 91553318 NC_060927.1 NC_000003.12 96.81 True relocation, scaffold gap is present, inconsistency = 201970 91960829 91968905 91561860 91553788 NC_060927.1 NC_000003.12 97.61 True local misassembly 91952245 91960489 91570107 91561861 NC_060927.1 NC_000003.12 98.59 True local misassembly 91931657 91951903 91590344 91570108 NC_060927.1 NC_000003.12 98.19 True local misassembly 91925744 91930801 91595406 91590345 NC_060927.1 NC_000003.12 98.5 True local misassembly 91905746 91925743 91615730 91595745 NC_060927.1 NC_000003.12 98.59 True local misassembly 91882352 91905406 91638776 91615731 NC_060927.1 NC_000003.12 98.6 True relocation, inconsistency = -643683 92504699 92524660 91660128 91640151 NC_060927.1 NC_000003.12 99.08 True local misassembly 92468983 92504360 91695513 91660129 NC_060927.1 NC_000003.12 99.15 True local misassembly 92467118 92467966 91696362 91695514 NC_060927.1 NC_000003.12 99.41 True local misassembly 92462282 92466779 91700860 91696363 NC_060927.1 NC_000003.12 99.44 True local misassembly 92459908 92461942 91702896 91700861 NC_060927.1 NC_000003.12 99.31 True local misassembly 92455590 92459231 91706537 91702897 NC_060927.1 NC_000003.12 98.57 True local misassembly 92427906 92455589 91734571 91706877 NC_060927.1 NC_000003.12 98.74 True relocation, inconsistency = -77717 92117247 92504409 92117030 91735785 NC_060927.1 NC_000003.12 95.2 True relocation, inconsistency = -289273 92404065 92406519 92119485 92117031 NC_060927.1 NC_000003.12 99.31 True local misassembly 92389434 92402871 92132928 92119486 NC_060927.1 NC_000003.12 99.32 True local misassembly 92377535 92389095 92144493 92132929 NC_060927.1 NC_000003.12 99.22 True local misassembly 92336894 92377534 92185491 92144834 NC_060927.1 NC_000003.12 98.94 True local misassembly 92328690 92335699 92192504 92185492 NC_060927.1 NC_000003.12 99.24 True local misassembly 92325497 92328351 92195360 92192505 NC_060927.1 NC_000003.12 99.61 True local misassembly 92319715 92325496 92201485 92195700 NC_060927.1 NC_000003.12 98.41 True local misassembly 92308454 92319714 92213091 92201825 NC_060927.1 NC_000003.12 98.63 True local misassembly 92293999 92308115 92227216 92213092 NC_060927.1 NC_000003.12 99.17 True local misassembly 92264814 92293660 92256085 92227217 NC_060927.1 NC_000003.12 98.93 True local misassembly 92262231 92263619 92257474 92256086 NC_060927.1 NC_000003.12 99.35 True local misassembly 92240935 92261892 92278439 92257475 NC_060927.1 NC_000003.12 99.17 True local misassembly 92236179 92239918 92282177 92278440 NC_060927.1 NC_000003.12 99.39 True local misassembly 92230467 92235840 92287557 92282178 NC_060927.1 NC_000003.12 99.13 True local misassembly 92218021 92230466 92300349 92287899 NC_060927.1 NC_000003.12 99.3 True local misassembly 92213053 92218020 92306847 92301879 NC_060927.1 NC_000003.12 99.22 True local misassembly 92194723 92212714 92324854 92306848 NC_060927.1 NC_000003.12 99.23 True relocation, inconsistency = -287062 92475790 92479674 92330854 92326965 NC_060927.1 NC_000003.12 99.02 True local misassembly 92455590 92475451 92350729 92330855 NC_060927.1 NC_000003.12 99.23 True local misassembly 92441439 92455589 92365224 92351068 NC_060927.1 NC_000003.12 99.3 True local misassembly 92440455 92441100 92365870 92365225 NC_060927.1 NC_000003.12 98.76 True local misassembly 92437120 92439437 92368189 92365871 NC_060927.1 NC_000003.12 99.22 True local misassembly 92435657 92436443 92368976 92368190 NC_060927.1 NC_000003.12 98.86 True local misassembly 92410856 92435318 92393443 92368977 NC_060927.1 NC_000003.12 98.85 True local misassembly 92343145 92410518 92460843 92393444 NC_060927.1 NC_000003.12 99.2 True local misassembly 92328690 92342806 92474963 92460844 NC_060927.1 NC_000003.12 99.11 True local misassembly 92266996 92328351 92536333 92474964 NC_060927.1 NC_000003.12 98.86 True relocation, inconsistency = -184006 92425818 92451001 92561532 92536334 NC_060927.1 NC_000003.12 98.83 True local misassembly 92423109 92424801 92563225 92561533 NC_060927.1 NC_000003.12 99.23 True local misassembly 92380728 92422091 92604606 92563226 NC_060927.1 NC_000003.12 99.13 True local misassembly 92367491 92380389 92617512 92604607 NC_060927.1 NC_000003.12 99.1 True local misassembly 92339088 92367153 92645591 92617513 NC_060927.1 NC_000003.12 99.04 True local misassembly 92331581 92338071 92652078 92645592 NC_060927.1 NC_000003.12 98.58 True local misassembly 92328690 92331242 92654631 92652079 NC_060927.1 NC_000003.12 99.45 True local misassembly 92320017 92328351 92662969 92654632 NC_060927.1 NC_000003.12 99.22 True local misassembly 92279577 92319678 92703094 92662970 NC_060927.1 NC_000003.12 98.88 True local misassembly 92270871 92279238 92711463 92703095 NC_060927.1 NC_000003.12 98.72 True local misassembly 92262198 92270532 92719799 92711464 NC_060927.1 NC_000003.12 98.37 True local misassembly 92244964 92261859 92736697 92719800 NC_060927.1 NC_000003.12 98.79 True local misassembly 92221726 92243430 92758412 92736698 NC_060927.1 NC_000003.12 99.11 True local misassembly 92213885 92221387 92765923 92758413 NC_060927.1 NC_000003.12 98.97 True local misassembly 92201155 92213202 92777978 92765924 NC_060927.1 NC_000003.12 99.15 True local misassembly 92180268 92201154 92799884 92778990 NC_060927.1 NC_000003.12 99.1 True local misassembly 92175472 92179250 92803667 92799885 NC_060927.1 NC_000003.12 99.23 True local misassembly 92169356 92175133 92809444 92803668 NC_060927.1 NC_000003.12 99.15 True local misassembly 92147390 92167480 92829538 92809445 NC_060927.1 NC_000003.12 98.81 True relocation, inconsistency = -100503 92185680 92247892 92891768 92829539 NC_060927.1 NC_000003.12 99.13 True local misassembly 92155231 92185003 92921543 92891769 NC_060927.1 NC_000003.12 98.77 True local misassembly 92140987 92154892 92935463 92921544 NC_060927.1 NC_000003.12 98.76 True local misassembly 92125129 92139793 92950133 92935464 NC_060927.1 NC_000003.12 99.27 True local misassembly 92122076 92124790 92952847 92950134 NC_060927.1 NC_000003.12 99.2 True relocation, inconsistency = -417493 92522189 92539568 92970229 92952848 NC_060927.1 NC_000003.12 99.29 True local misassembly 92517109 92522077 92976324 92971355 NC_060927.1 NC_000003.12 99.11 True local misassembly 92508444 92515745 92983622 92976325 NC_060927.1 NC_000003.12 98.84 True local misassembly 92484463 92508443 93008291 92984300 NC_060927.1 NC_000003.12 99.11 True local misassembly 92471972 92484124 93020446 93008292 NC_060927.1 NC_000003.12 98.91 True local misassembly 92455703 92471630 93036374 93020447 NC_060927.1 NC_000003.12 98.69 True local misassembly 92450183 92455702 93042236 93036712 NC_060927.1 NC_000003.12 98.68 True local misassembly 92429875 92450182 93065447 93045128 NC_060927.1 NC_000003.12 98.81 True local misassembly 92402929 92429536 93092063 93065448 NC_060927.1 NC_000003.12 98.82 True local misassembly 92380728 92401910 93113251 93092064 NC_060927.1 NC_000003.12 98.99 True local misassembly 92376521 92380389 93117119 93113252 NC_060927.1 NC_000003.12 98.58 True local misassembly 92366273 92375844 93126694 93117120 NC_060927.1 NC_000003.12 98.85 True local misassembly 92363382 92365934 93129248 93126695 NC_060927.1 NC_000003.12 99.45 True local misassembly 92299781 92363043 93192522 93129249 NC_060927.1 NC_000003.12 98.92 True local misassembly 92283997 92299442 93207973 93192523 NC_060927.1 NC_000003.12 99.0 True local misassembly 92266412 92283320 93224885 93207974 NC_060927.1 NC_000003.12 99.06 True indel: stretch of mismatches 92256416 92266073 93234884 93225224 NC_060927.1 NC_000003.12 98.26 True local misassembly 92244901 92256077 93246070 93234885 NC_060927.1 NC_000003.12 99.18 True local misassembly 92233289 92244563 93257348 93246071 NC_060927.1 NC_000003.12 99.01 True local misassembly 92210211 92232950 93280092 93257349 NC_060927.1 NC_000003.12 98.85 True local misassembly 92194723 92209873 93295256 93280093 NC_060927.1 NC_000003.12 98.47 True local misassembly 92187070 92193705 93301873 93295257 NC_060927.1 NC_000003.12 99.1 True local misassembly 92168706 92186731 93319913 93301874 NC_060927.1 NC_000003.12 98.83 True local misassembly 92164066 92167684 93323531 93319914 NC_060927.1 NC_000003.12 98.59 True local misassembly 92148493 92164065 93339443 93323872 NC_060927.1 NC_000003.12 98.45 True relocation, inconsistency = 158110 91968901 91989267 93360925 93340559 NC_060927.1 NC_000003.12 98.32 True local misassembly 91942143 91968900 93389025 93362289 NC_060927.1 NC_000003.12 98.43 True local misassembly 91931792 91939248 93396481 93389026 NC_060927.1 NC_000003.12 98.66 True local misassembly 91926036 91931450 93401894 93396482 NC_060927.1 NC_000003.12 98.86 True local misassembly 91902568 91925696 93425015 93401895 NC_060927.1 NC_000003.12 98.28 True local misassembly 91894184 91901374 93432206 93425016 NC_060927.1 NC_000003.12 98.85 True local misassembly 91885508 91893844 93440544 93432207 NC_060927.1 NC_000003.12 98.58 True local misassembly 91879752 91885166 93445959 93440545 NC_060927.1 NC_000003.12 98.86 True local misassembly 91855771 91879751 93470261 93446298 NC_060927.1 NC_000003.12 98.36 True relocation, scaffold gap is present, inconsistency = -162894 91836716 92018130 93655574 93470796 NC_060927.1 NC_000003.12 95.02 True relocation, scaffold gap is present, inconsistency = 4339701 96407839 98449202 93705582 95746924 NC_060927.1 NC_000003.12 99.31 True local misassembly 98449440 140791575 95749273 138050915 NC_060927.1 NC_000003.12 99.63 True indel: indel (> 5bp) 140791646 143167286 138051031 140419495 NC_060927.1 NC_000003.12 99.52 True indel: indel (> 5bp) 143167389 178976757 140419671 176181883 NC_060927.1 NC_000003.12 99.65 True local misassembly 178977274 190235574 176181908 187418139 NC_060927.1 NC_000003.12 99.47 True local misassembly 190241855 194314956 187424420 191505793 NC_060927.1 NC_000003.12 99.56 True translocation 128887500 128889135 191550436 191552073 NC_060947.1 NC_000003.12 96.64 True translocation 44055939 44056589 191600619 191601276 NC_060936.1 NC_000003.12 95.14 True translocation 194314955 198402071 191618566 195692080 NC_060927.1 NC_000003.12 99.1 True relocation, inconsistency = 267728 198669800 198675915 195698198 195692081 NC_060927.1 NC_000003.12 99.47 True indel: indel (> 5bp) 198668690 198669767 195699276 195698199 NC_060927.1 NC_000003.12 99.54 True indel: indel (> 5bp) 198668055 198668689 195699954 195699318 NC_060927.1 NC_000003.12 99.53 True local misassembly 198657252 198667724 195710439 195699955 NC_060927.1 NC_000003.12 99.6 True local misassembly 198656630 198657140 195711421 195710911 NC_060927.1 NC_000003.12 95.5 True indel: indel (> 5bp) 198655342 198656629 195712752 195711467 NC_060927.1 NC_000003.12 99.07 True local misassembly 198650755 198652014 195715612 195714353 NC_060927.1 NC_000003.12 99.44 True indel: indel (> 5bp) 198649304 198650730 195717038 195715613 NC_060927.1 NC_000003.12 99.37 True indel: indel (> 5bp) 198641023 198649274 195725283 195717039 NC_060927.1 NC_000003.12 98.93 True local misassembly 198634824 198641022 195731994 195725797 NC_060927.1 NC_000003.12 99.53 True indel: indel (> 5bp) 198606935 198634823 195759938 195732020 NC_060927.1 NC_000003.12 99.46 True indel: indel (> 5bp) 198606350 198606908 195760497 195759939 NC_060927.1 NC_000003.12 99.28 True local misassembly 198603567 198605715 195762646 195760498 NC_060927.1 NC_000003.12 99.63 True local misassembly 198601692 198603208 195764308 195762785 NC_060927.1 NC_000003.12 99.28 True indel: indel (> 5bp) 198598476 198601691 195767555 195764340 NC_060927.1 NC_000003.12 99.84 True local misassembly 198594595 198597848 195771173 195767920 NC_060927.1 NC_000003.12 99.69 True local misassembly 198593071 198593860 195772185 195771396 NC_060927.1 NC_000003.12 99.75 True indel: indel (> 5bp) 198592521 198593070 195772763 195772214 NC_060927.1 NC_000003.12 99.82 True indel: indel (> 5bp) 198591579 198592490 195773675 195772764 NC_060927.1 NC_000003.12 99.78 True indel: indel (> 5bp) 198588873 198591578 195776440 195773738 NC_060927.1 NC_000003.12 97.78 True indel: indel (> 5bp) 198588316 198588872 195777072 195776516 NC_060927.1 NC_000003.12 95.33 True indel: indel (> 5bp) 198586317 198588270 195779011 195777073 NC_060927.1 NC_000003.12 96.26 True local misassembly 198577667 198579617 195786554 195784604 NC_060927.1 NC_000003.12 99.13 True indel: indel (> 5bp) 198576547 198577570 195787578 195786555 NC_060927.1 NC_000003.12 99.12 True local misassembly 198555697 198569547 195802406 195788578 NC_060927.1 NC_000003.12 99.61 True indel: indel (> 5bp) 198545598 198555672 195812501 195802407 NC_060927.1 NC_000003.12 99.54 True indel: indel (> 5bp) 198541740 198545555 195816315 195812502 NC_060927.1 NC_000003.12 99.58 True indel: indel (> 5bp) 198540762 198541739 195817382 195816404 NC_060927.1 NC_000003.12 99.49 True local misassembly 198535242 198540272 195822413 195817383 NC_060927.1 NC_000003.12 99.82 True indel: indel (> 5bp) 198532850 198535241 195824832 195822437 NC_060927.1 NC_000003.12 99.58 True indel: indel (> 5bp) 198527061 198532849 195830729 195824941 NC_060927.1 NC_000003.12 99.55 True indel: indel (> 5bp) 198522536 198527060 195835312 195830798 NC_060927.1 NC_000003.12 99.43 True indel: indel (> 5bp) 198521914 198522535 195835956 195835335 NC_060927.1 NC_000003.12 99.84 True indel: indel (> 5bp) 198519809 198521858 195838006 195835957 NC_060927.1 NC_000003.12 99.95 True indel: indel (> 5bp) 198517560 198519808 195840319 195838069 NC_060927.1 NC_000003.12 99.69 True indel: indel (> 5bp) 198492471 198517559 195865394 195840345 NC_060927.1 NC_000003.12 99.64 True local misassembly 198482628 198492015 195874750 195865395 NC_060927.1 NC_000003.12 99.5 True local misassembly 198476909 198482627 195880827 195875106 NC_060927.1 NC_000003.12 99.6 True local misassembly 198440837 198476908 195917208 195881133 NC_060927.1 NC_000003.12 99.9 True indel: indel (> 5bp) 198402072 198440813 195955964 195917209 NC_060927.1 NC_000003.12 99.73 True relocation, inconsistency = 235102 198675916 200967261 195955965 198235559 NC_060927.1 NC_000003.12 98.17 True CONTIG NC_000003.12 198295559 misassembled 1453924 1609283 155397 1 NC_060938.1 NT_167215.1 99.46 True CONTIG NT_167215.1 155397 correct 3195 1430842 10122 1429357 NC_060928.1 NC_000004.12 97.72 True fake: scaffold gap size wrong estimation (local) 1436064 1436755 1434398 1435090 NC_060928.1 NC_000004.12 97.55 True fake: scaffold gap size wrong estimation (local) 1438748 8782675 1441591 8797477 NC_060928.1 NC_000004.12 98.74 True relocation, scaffold gap is present, inconsistency = -18268 8783408 9123173 8816478 9156381 NC_060928.1 NC_000004.12 99.9 True local misassembly 9173955 9178004 9209815 9213863 NC_060928.1 NC_000004.12 97.75 True local misassembly 9182756 9236264 9213864 9267340 NC_060928.1 NC_000004.12 99.2 True relocation, inconsistency = 37956 9274221 9279692 9267341 9272812 NC_060928.1 NC_000004.12 99.49 True fake: scaffold gap size wrong estimation (local) 9329214 9347766 9322935 9341486 NC_060928.1 NC_000004.12 99.6 True relocation, inconsistency = 14238 9362005 9442364 9341487 9421848 NC_060928.1 NC_000004.12 99.72 True indel: indel (> 5bp) 9442393 9469876 9421849 9449340 NC_060928.1 NC_000004.12 99.84 True indel: indel (> 5bp) 9470015 9476046 9449341 9455374 NC_060928.1 NC_000004.12 99.64 True relocation, inconsistency = -24410 9476047 9567675 9479785 9571438 NC_060928.1 NC_000004.12 99.61 True indel: indel (> 5bp) 9567676 9571490 9571547 9575353 NC_060928.1 NC_000004.12 99.4 True local misassembly 9571491 9594935 9575825 9599270 NC_060928.1 NC_000004.12 99.37 True indel: indel (> 5bp) 9594957 9597299 9599271 9601614 NC_060928.1 NC_000004.12 99.66 True local misassembly 9598273 9611960 9601615 9615306 NC_060928.1 NC_000004.12 98.69 True indel: indel (> 5bp) 9611961 9625125 9615351 9628544 NC_060928.1 NC_000004.12 97.96 True indel: indel (> 5bp) 9625126 9669013 9628569 9672451 NC_060928.1 NC_000004.12 99.64 True indel: indel (> 5bp) 9669014 9683845 9672474 9687286 NC_060928.1 NC_000004.12 99.47 True indel: indel (> 5bp) 9683846 9688165 9687358 9691672 NC_060928.1 NC_000004.12 99.49 True indel: indel (> 5bp) 9688166 9699664 9691701 9703203 NC_060928.1 NC_000004.12 99.68 True local misassembly 9702807 9733899 9703204 9734293 NC_060928.1 NC_000004.12 99.67 True indel: indel (> 5bp) 9733900 9749024 9734326 9749458 NC_060928.1 NC_000004.12 99.71 True indel: indel (> 5bp) 9749025 9758385 9749495 9758859 NC_060928.1 NC_000004.12 99.7 True local misassembly 9758631 9926040 9758860 9926240 NC_060928.1 NC_000004.12 99.84 True indel: indel (> 5bp) 9926041 9950438 9926282 9950666 NC_060928.1 NC_000004.12 99.72 True local misassembly 9950439 9954702 9950917 9955195 NC_060928.1 NC_000004.12 98.6 True local misassembly 9954703 9980466 9955514 9981278 NC_060928.1 NC_000004.12 99.53 True local misassembly 9980845 10131089 9981279 10131508 NC_060928.1 NC_000004.12 99.8 True indel: indel (> 5bp) 10131136 10134111 10131509 10134490 NC_060928.1 NC_000004.12 99.33 True local misassembly 10134374 12693017 10135093 12713680 NC_060928.1 NC_000004.12 98.69 True local misassembly 12693914 32807839 12714144 32833016 NC_060928.1 NC_000004.12 99.71 True fake: scaffold gap size wrong estimation (local) 32808354 49245434 32839459 49286609 NC_060928.1 NC_000004.12 99.58 True local misassembly 49245917 49252113 49292232 49298414 NC_060928.1 NC_000004.12 97.76 True local misassembly 49252688 49253776 49298992 49300080 NC_060928.1 NC_000004.12 97.52 True indel: indel (> 5bp) 49253801 49260356 49300081 49306642 NC_060928.1 NC_000004.12 96.43 True fake: not a misassembly (possible transposable element) 49260357 49262732 49309024 49306643 NC_060928.1 NC_000004.12 99.71 True fake: not a misassembly (possible transposable element) 49262733 49264659 49309025 49310960 NC_060928.1 NC_000004.12 99.12 True local misassembly 49264951 49269273 49310961 49315266 NC_060928.1 NC_000004.12 95.84 True indel: indel (> 5bp) 49269274 49270342 49315291 49316359 NC_060928.1 NC_000004.12 97.47 True indel: indel (> 5bp) 49270490 49277258 49316360 49323142 NC_060928.1 NC_000004.12 97.94 True local misassembly 49282913 49296173 49323665 49336924 NC_060928.1 NC_000004.12 99.86 True translocation, scaffold gap is present 7579990 7607867 49514788 49486925 NC_060946.1 NC_000004.12 99.61 True relocation, inconsistency = 18507 7558101 7561482 49518187 49514789 NC_060946.1 NC_000004.12 98.85 True indel: indel (> 5bp) 7525825 7558061 49550415 49518188 NC_060946.1 NC_000004.12 99.56 True indel: indel (> 5bp) 7522926 7525824 49553343 49550446 NC_060946.1 NC_000004.12 99.69 True indel: indel (> 5bp) 7480608 7522925 49595699 49553383 NC_060946.1 NC_000004.12 99.64 True local misassembly 7474337 7480607 49604784 49598513 NC_060946.1 NC_000004.12 99.62 True indel: indel (> 5bp) 7471799 7474336 49607397 49604874 NC_060946.1 NC_000004.12 98.98 True indel: indel (> 5bp) 7447467 7471798 49631848 49607522 NC_060946.1 NC_000004.12 99.22 True local misassembly 7445581 7447153 49633441 49631849 NC_060946.1 NC_000004.12 95.79 True local misassembly 7440273 7442093 49645197 49643357 NC_060946.1 NC_000004.12 97.01 True local misassembly 7439333 7440192 49646407 49645528 NC_060946.1 NC_000004.12 95.68 True indel: indel (> 5bp) 7438106 7439041 49647673 49646739 NC_060946.1 NC_000004.12 96.79 True local misassembly 7437467 7438105 49648573 49647939 NC_060946.1 NC_000004.12 95.62 True local misassembly 7433341 7434222 49650622 49649736 NC_060946.1 NC_000004.12 95.83 True local misassembly 7427958 7429119 49655924 49654757 NC_060946.1 NC_000004.12 96.92 True relocation, inconsistency = 124320 7301979 7302825 49657588 49656737 NC_060946.1 NC_000004.12 95.31 True translocation, scaffold gap is present 49704398 49705620 49709827 49708605 NC_060928.1 NC_000004.12 97.47 True relocation, scaffold gap is present, inconsistency = 5309337 55017192 55023653 49712062 49718521 NC_060928.1 NC_000004.12 97.12 True local misassembly 55023654 55025967 49719203 49721517 NC_060928.1 NC_000004.12 96.2 True local misassembly 55025968 55028456 49722197 49724687 NC_060928.1 NC_000004.12 96.63 True local misassembly 55028457 55031302 49725369 49728215 NC_060928.1 NC_000004.12 97.05 True local misassembly 55031303 55034961 49728902 49732563 NC_060928.1 NC_000004.12 97.16 True local misassembly 55035814 55038441 49732564 49735194 NC_060928.1 NC_000004.12 97.23 True local misassembly 55039965 55043550 49735360 49738950 NC_060928.1 NC_000004.12 96.55 True relocation, inconsistency = -4760342 50283532 50295484 49739274 49751226 NC_060928.1 NC_000004.12 98.33 True local misassembly 50296334 50331820 49751227 49786713 NC_060928.1 NC_000004.12 98.59 True local misassembly 50332010 50335002 49788771 49791761 NC_060928.1 NC_000004.12 97.73 True local misassembly 50335684 50341446 49791762 49797518 NC_060928.1 NC_000004.12 98.07 True local misassembly 50341447 50346370 49798200 49803121 NC_060928.1 NC_000004.12 99.15 True local misassembly 50346883 50349654 49803122 49805892 NC_060928.1 NC_000004.12 97.29 True fake: not a misassembly (possible transposable element) 55107603 55112887 49805893 49811176 NC_060928.1 NC_000004.12 97.67 True fake: not a misassembly (possible transposable element) 50354599 50355848 49811177 49812430 NC_060928.1 NC_000004.12 96.45 True local misassembly 50357041 50371657 49812431 49827044 NC_060928.1 NC_000004.12 98.7 True local misassembly 50372848 50382915 49827045 49837111 NC_060928.1 NC_000004.12 98.69 True local misassembly 50383765 50389808 49837112 49843156 NC_060928.1 NC_000004.12 98.78 True relocation, inconsistency = 4757942 55147782 55148685 49843188 49844086 NC_060928.1 NC_000004.12 96.79 True local misassembly 55149878 55156281 49844087 49850488 NC_060928.1 NC_000004.12 98.06 True relocation, inconsistency = -4872417 50283865 50308708 49850489 49875319 NC_060928.1 NC_000004.12 98.78 True local misassembly 50309388 50322074 49875320 49888002 NC_060928.1 NC_000004.12 98.97 True local misassembly 50322756 50328538 49888003 49893779 NC_060928.1 NC_000004.12 97.91 True local misassembly 50329220 50331770 49893780 49896327 NC_060928.1 NC_000004.12 96.94 True local misassembly 50332452 50335002 49896328 49898873 NC_060928.1 NC_000004.12 97.61 True local misassembly 50335684 50339959 49898874 49903149 NC_060928.1 NC_000004.12 98.04 True local misassembly 50342002 50350378 49903150 49911522 NC_060928.1 NC_000004.12 98.96 True local misassembly 50351398 50357012 49911523 49917135 NC_060928.1 NC_000004.12 98.81 True local misassembly 50357862 50361027 49917136 49920298 NC_060928.1 NC_000004.12 98.8 True local misassembly 50363524 50370215 49920922 49927609 NC_060928.1 NC_000004.12 98.89 True indel: indel (> 5bp) 50370398 50390150 49927610 49947352 NC_060928.1 NC_000004.12 98.86 True local misassembly 50390151 50393351 49947863 49951052 NC_060928.1 NC_000004.12 95.94 True local misassembly 50394033 50396140 49951053 49953155 NC_060928.1 NC_000004.12 96.35 True local misassembly 50396649 50422287 49953156 49978793 NC_060928.1 NC_000004.12 98.56 True relocation, inconsistency = -391697 50032656 50034919 49980859 49983116 NC_060928.1 NC_000004.12 96.82 True local misassembly 50035769 50051815 49983117 49999163 NC_060928.1 NC_000004.12 98.98 True local misassembly 50052497 50055082 49999164 50001745 NC_060928.1 NC_000004.12 96.87 True local misassembly 50055083 50056471 50002255 50003642 NC_060928.1 NC_000004.12 95.61 True local misassembly 50056472 50061565 50004835 50009927 NC_060928.1 NC_000004.12 98.59 True relocation, inconsistency = 5007972 55069538 55070232 50009928 50010618 NC_060928.1 NC_000004.12 97.4 True indel: indel (> 5bp) 55070233 55074612 50010789 50015167 NC_060928.1 NC_000004.12 96.87 True local misassembly 55074613 55077178 50015849 50018415 NC_060928.1 NC_000004.12 96.42 True local misassembly 55082022 55089674 50022067 50029718 NC_060928.1 NC_000004.12 97.9 True local misassembly 55089675 55100058 50030400 50040772 NC_060928.1 NC_000004.12 97.42 True local misassembly 55100059 55107308 50041454 50048700 NC_060928.1 NC_000004.12 96.48 True local misassembly 55107309 55112887 50049209 50054788 NC_060928.1 NC_000004.12 97.44 True local misassembly 55114965 55116763 50056187 50057986 NC_060928.1 NC_000004.12 96.54 True relocation, inconsistency = -5139458 49977306 49983370 50057987 50064047 NC_060928.1 NC_000004.12 99.08 True local misassembly 49983713 49986944 50064048 50067277 NC_060928.1 NC_000004.12 99.23 True local misassembly 49987287 49990499 50067278 50070487 NC_060928.1 NC_000004.12 99.04 True local misassembly 49990841 50004777 50070488 50084423 NC_060928.1 NC_000004.12 98.43 True local misassembly 50006819 50007329 50084596 50085108 NC_060928.1 NC_000004.12 98.93 True fake: not a misassembly (possible transposable element) 55142526 55145863 50085109 50088449 NC_060928.1 NC_000004.12 96.02 True fake: not a misassembly (possible transposable element) 50009349 50016264 50088489 50095402 NC_060928.1 NC_000004.12 99.16 True local misassembly 50016946 50019549 50095403 50098006 NC_060928.1 NC_000004.12 98.16 True local misassembly 50020231 50035705 50098007 50113480 NC_060928.1 NC_000004.12 98.64 True local misassembly 50035895 50051865 50114352 50130307 NC_060928.1 NC_000004.12 98.19 True relocation, inconsistency = 4740028 54791894 54794177 50130308 50132591 NC_060928.1 NC_000004.12 96.54 True local misassembly 54794859 54797186 50132592 50134919 NC_060928.1 NC_000004.12 97.77 True local misassembly 54797866 54813840 50134920 50150894 NC_060928.1 NC_000004.12 98.79 True relocation, inconsistency = 291410 55105251 55108492 50150895 50154135 NC_060928.1 NC_000004.12 97.45 True local misassembly 55108493 55117581 50154813 50163896 NC_060928.1 NC_000004.12 97.7 True local misassembly 55117582 55120556 50164576 50167553 NC_060928.1 NC_000004.12 96.41 True local misassembly 55121599 55124372 50167743 50170516 NC_060928.1 NC_000004.12 97.26 True local misassembly 55124373 55127175 50171199 50173999 NC_060928.1 NC_000004.12 96.86 True relocation, inconsistency = -48134 55079688 55082280 50174646 50177238 NC_060928.1 NC_000004.12 96.57 True local misassembly 55084350 55087758 50177436 50180844 NC_060928.1 NC_000004.12 96.77 True local misassembly 55088951 55099646 50180845 50191541 NC_060928.1 NC_000004.12 98.12 True relocation, inconsistency = 44223 55144549 55147581 50192221 50195254 NC_060928.1 NC_000004.12 96.67 True local misassembly 55148091 55153399 50195255 50200561 NC_060928.1 NC_000004.12 96.58 True relocation, inconsistency = -392956 54760444 54776146 50200562 50216257 NC_060928.1 NC_000004.12 98.43 True relocation, inconsistency = 341592 55117739 55119611 50216258 50218126 NC_060928.1 NC_000004.12 97.26 True local misassembly 55121144 55124149 50218127 50221129 NC_060928.1 NC_000004.12 98.08 True relocation, inconsistency = -341081 54783069 54791557 50221130 50229614 NC_060928.1 NC_000004.12 98.86 True local misassembly 54792748 54797186 50229615 50234057 NC_060928.1 NC_000004.12 98.45 True local misassembly 54797866 54813786 50234058 50249982 NC_060928.1 NC_000004.12 98.76 True local misassembly 54814468 54817052 50249983 50252573 NC_060928.1 NC_000004.12 96.99 True local misassembly 54817904 54820454 50252574 50255118 NC_060928.1 NC_000004.12 96.32 True local misassembly 54821306 54824537 50255119 50258348 NC_060928.1 NC_000004.12 98.14 True indel: indel (> 5bp) 54824708 54827939 50258349 50261581 NC_060928.1 NC_000004.12 99.23 True indel: indel (> 5bp) 54828110 54831085 50261582 50264556 NC_060928.1 NC_000004.12 98.67 True relocation, inconsistency = 293287 55124373 55133838 50264557 50274010 NC_060928.1 NC_000004.12 97.57 True relocation, inconsistency = -1812662 53321177 53342050 50274011 50295215 NC_060928.1 NC_000004.12 96.86 True relocation, inconsistency = 1406778 54748829 54751767 50295216 50298154 NC_060928.1 NC_000004.12 98.44 True local misassembly 54752617 54761626 50298155 50307165 NC_060928.1 NC_000004.12 98.34 True indel: indel (> 5bp) 54761627 54766450 50307336 50312157 NC_060928.1 NC_000004.12 97.99 True local misassembly 54767132 54769116 50312158 50314142 NC_060928.1 NC_000004.12 97.03 True local misassembly 54769966 54772914 50314143 50317090 NC_060928.1 NC_000004.12 98.44 True local misassembly 54773596 54782307 50317091 50325807 NC_060928.1 NC_000004.12 97.91 True local misassembly 54783069 54790342 50325886 50333154 NC_060928.1 NC_000004.12 98.69 True relocation, inconsistency = -4491369 50298985 50305951 50333166 50340134 NC_060928.1 NC_000004.12 98.59 True local misassembly 50305952 50309148 50340646 50343833 NC_060928.1 NC_000004.12 96.06 True local misassembly 50309830 50341466 50343834 50375458 NC_060928.1 NC_000004.12 98.81 True local misassembly 50342148 50344698 50375459 50378006 NC_060928.1 NC_000004.12 97.06 True local misassembly 50345380 50350378 50378007 50383003 NC_060928.1 NC_000004.12 98.26 True local misassembly 50351398 50354563 50383004 50386171 NC_060928.1 NC_000004.12 97.98 True local misassembly 50355245 50361027 50386172 50391953 NC_060928.1 NC_000004.12 97.98 True local misassembly 50361709 50366966 50391954 50397200 NC_060928.1 NC_000004.12 97.07 True local misassembly 50367731 50370778 50398478 50401519 NC_060928.1 NC_000004.12 96.29 True local misassembly 50371460 50383211 50401520 50413266 NC_060928.1 NC_000004.12 98.89 True local misassembly 50383891 50388319 50413267 50417693 NC_060928.1 NC_000004.12 97.71 True relocation, inconsistency = 4665254 55053574 55059062 50417694 50423181 NC_060928.1 NC_000004.12 97.67 True local misassembly 55059063 55061220 50423863 50426019 NC_060928.1 NC_000004.12 96.48 True indel: indel (> 5bp) 55061391 55072088 50426020 50436704 NC_060928.1 NC_000004.12 97.24 True relocation, inconsistency = -295671 54776418 54782307 50436705 50442597 NC_060928.1 NC_000004.12 97.97 True local misassembly 54783069 54788960 50442676 50448564 NC_060928.1 NC_000004.12 99.03 True relocation, inconsistency = 297368 55086329 55089933 50448565 50452171 NC_060928.1 NC_000004.12 96.4 True local misassembly 55090444 55092002 50452172 50453730 NC_060928.1 NC_000004.12 95.15 True relocation, inconsistency = -300600 54791403 54800340 50453731 50462666 NC_060928.1 NC_000004.12 98.24 True fake: not a misassembly (possible transposable element) 55103487 55104756 50462667 50463936 NC_060928.1 NC_000004.12 96.95 True fake: not a misassembly (possible transposable element) 54801098 54807349 50463937 50470182 NC_060928.1 NC_000004.12 97.62 True local misassembly 54808031 54813014 50470183 50475169 NC_060928.1 NC_000004.12 97.97 True relocation, scaffold gap is present, inconsistency = 303845 55117355 55120764 50475665 50479071 NC_060928.1 NC_000004.12 97.86 True indel: indel (> 5bp) 55120936 55129474 50479072 50487601 NC_060928.1 NC_000004.12 97.89 True relocation, inconsistency = -302472 54827003 54827939 50487602 50488538 NC_060928.1 NC_000004.12 97.74 True indel: indel (> 5bp) 54828110 54831341 50488539 50491771 NC_060928.1 NC_000004.12 98.86 True indel: indel (> 5bp) 54831512 54837305 50491772 50497563 NC_060928.1 NC_000004.12 98.69 True fake: not a misassembly (possible transposable element) 55141199 55144960 50497628 50501388 NC_060928.1 NC_000004.12 97.24 True fake: not a misassembly (possible transposable element) 54842323 54851110 50501389 50510181 NC_060928.1 NC_000004.12 98.89 True local misassembly 54851111 54863153 50511542 50523585 NC_060928.1 NC_000004.12 98.59 True local misassembly 54863154 54870481 50524097 50531420 NC_060928.1 NC_000004.12 97.83 True relocation, inconsistency = 210120 55080602 55082021 50531421 50532838 NC_060928.1 NC_000004.12 96.62 True local misassembly 55082022 55087340 50533520 50538833 NC_060928.1 NC_000004.12 97.01 True local misassembly 55087341 55100143 50539515 50552307 NC_060928.1 NC_000004.12 97.62 True local misassembly 55102205 55105223 50552497 50555517 NC_060928.1 NC_000004.12 96.86 True local misassembly 55105224 55110354 50556200 50561330 NC_060928.1 NC_000004.12 97.76 True relocation, inconsistency = -4838573 50273158 50291364 50562707 50580913 NC_060928.1 NC_000004.12 98.82 True local misassembly 50291877 50293917 50580914 50582952 NC_060928.1 NC_000004.12 99.31 True local misassembly 50295108 50302205 50582953 50590044 NC_060928.1 NC_000004.12 99.0 True fake: not a misassembly (possible transposable element) 55142137 55144849 50590045 50592759 NC_060928.1 NC_000004.12 97.26 True fake: not a misassembly (possible transposable element) 50304410 50314876 50592760 50603225 NC_060928.1 NC_000004.12 98.29 True local misassembly 50315725 50318256 50603226 50605756 NC_060928.1 NC_000004.12 98.1 True indel: indel (> 5bp) 50318257 50334562 50605928 50622234 NC_060928.1 NC_000004.12 98.77 True local misassembly 50335242 50338017 50622235 50625009 NC_060928.1 NC_000004.12 98.38 True local misassembly 50338699 50347929 50625010 50634244 NC_060928.1 NC_000004.12 98.69 True local misassembly 50348611 50350646 50634245 50636276 NC_060928.1 NC_000004.12 96.41 True indel: indel (> 5bp) 50350817 50351331 50636277 50636792 NC_060928.1 NC_000004.12 97.67 True local misassembly 50352013 50353935 50636793 50638713 NC_060928.1 NC_000004.12 98.39 True local misassembly 50354785 50357849 50638714 50641777 NC_060928.1 NC_000004.12 98.27 True relocation, inconsistency = 4783965 55142578 55144849 50642541 50644811 NC_060928.1 NC_000004.12 96.74 True relocation, inconsistency = -4869527 50275323 50292832 50644812 50662311 NC_060928.1 NC_000004.12 98.86 True local misassembly 50293514 50302737 50662312 50671531 NC_060928.1 NC_000004.12 99.0 True local misassembly 50303419 50311244 50671532 50679358 NC_060928.1 NC_000004.12 98.74 True local misassembly 50313066 50324523 50679819 50691271 NC_060928.1 NC_000004.12 98.49 True local misassembly 50325373 50331820 50691272 50697715 NC_060928.1 NC_000004.12 98.76 True local misassembly 50332010 50347414 50699776 50715181 NC_060928.1 NC_000004.12 98.97 True indel: indel (> 5bp) 50347585 50350646 50715182 50718241 NC_060928.1 NC_000004.12 98.53 True indel: indel (> 5bp) 50350817 50361027 50718242 50728449 NC_060928.1 NC_000004.12 98.14 True local misassembly 50361709 50364259 50728450 50730999 NC_060928.1 NC_000004.12 98.39 True local misassembly 50364941 50367650 50731000 50733710 NC_060928.1 NC_000004.12 98.89 True local misassembly 50367651 50379602 50734392 50746342 NC_060928.1 NC_000004.12 98.87 True local misassembly 50379603 50383701 50747535 50751632 NC_060928.1 NC_000004.12 98.8 True local misassembly 50383891 50388974 50753690 50758771 NC_060928.1 NC_000004.12 98.47 True local misassembly 50389176 50395969 50758772 50765559 NC_060928.1 NC_000004.12 99.0 True indel: indel (> 5bp) 50395970 50399638 50765728 50769400 NC_060928.1 NC_000004.12 98.01 True local misassembly 50401815 50409330 50769707 50777220 NC_060928.1 NC_000004.12 98.79 True local misassembly 50410012 50412494 50777221 50779702 NC_060928.1 NC_000004.12 98.31 True relocation, inconsistency = -126039 50286764 50289447 50780011 50782686 NC_060928.1 NC_000004.12 98.36 True local misassembly 50289448 50308302 50784048 50802898 NC_060928.1 NC_000004.12 98.72 True local misassembly 50309152 50312430 50802899 50806172 NC_060928.1 NC_000004.12 98.02 True local misassembly 50313006 50318256 50807939 50813194 NC_060928.1 NC_000004.12 98.92 True local misassembly 50318257 50325352 50814388 50821478 NC_060928.1 NC_000004.12 99.08 True local misassembly 50325353 50327597 50821989 50824231 NC_060928.1 NC_000004.12 98.4 True local misassembly 50327598 50341466 50825591 50839459 NC_060928.1 NC_000004.12 98.58 True local misassembly 50342148 50344748 50839460 50842056 NC_060928.1 NC_000004.12 97.15 True local misassembly 50344749 50350817 50842567 50848632 NC_060928.1 NC_000004.12 98.67 True local misassembly 50350818 50354563 50849820 50853564 NC_060928.1 NC_000004.12 98.72 True local misassembly 50356744 50367518 50853872 50864628 NC_060928.1 NC_000004.12 97.42 True local misassembly 50368200 50370506 50864629 50866932 NC_060928.1 NC_000004.12 98.92 True local misassembly 50371188 50377214 50866933 50872955 NC_060928.1 NC_000004.12 98.84 True local misassembly 50377896 50380446 50872956 50875502 NC_060928.1 NC_000004.12 97.37 True local misassembly 50381128 50383651 50875503 50878026 NC_060928.1 NC_000004.12 97.27 True local misassembly 50384333 50388417 50878027 50882110 NC_060928.1 NC_000004.12 98.07 True local misassembly 50389780 50396140 50882111 50888471 NC_060928.1 NC_000004.12 98.66 True local misassembly 50396649 50415574 50888472 50907400 NC_060928.1 NC_000004.12 98.48 True local misassembly 50416256 50422252 50907401 50913401 NC_060928.1 NC_000004.12 97.8 True local misassembly 50422934 50428432 50913402 50918893 NC_060928.1 NC_000004.12 97.44 True relocation, inconsistency = 4600468 55028901 55033850 50918894 50923837 NC_060928.1 NC_000004.12 97.67 True local misassembly 55035374 55039529 50924003 50928158 NC_060928.1 NC_000004.12 97.69 True local misassembly 55040382 55042982 50928159 50930758 NC_060928.1 NC_000004.12 97.31 True relocation, inconsistency = 80274 55124150 55125581 50931652 50933086 NC_060928.1 NC_000004.12 96.1 True local misassembly 55126701 55133113 50933523 50939934 NC_060928.1 NC_000004.12 97.02 True relocation, inconsistency = -84014 55056289 55059062 50947124 50949898 NC_060928.1 NC_000004.12 97.01 True local misassembly 55059063 55061865 50950580 50953378 NC_060928.1 NC_000004.12 96.68 True local misassembly 55063942 55066967 50953583 50956611 NC_060928.1 NC_000004.12 96.2 True local misassembly 55067478 55069525 50956612 50958660 NC_060928.1 NC_000004.12 96.44 True local misassembly 55071595 55079729 50960049 50968180 NC_060928.1 NC_000004.12 96.58 True local misassembly 55081799 55087394 50968378 50973972 NC_060928.1 NC_000004.12 97.12 True relocation, inconsistency = 41670 55129475 55132025 50974383 50976933 NC_060928.1 NC_000004.12 96.79 True local misassembly 55132026 55134278 50977615 50979868 NC_060928.1 NC_000004.12 96.67 True local misassembly 55135339 55137387 50980249 50982298 NC_060928.1 NC_000004.12 97.22 True local misassembly 55137388 55139677 50982980 50985265 NC_060928.1 NC_000004.12 97.21 True local misassembly 55139678 55141528 50985949 50987801 NC_060928.1 NC_000004.12 96.55 True relocation, inconsistency = -102718 55039965 55043558 50988956 50992551 NC_060928.1 NC_000004.12 96.77 True local misassembly 55044241 55047546 50992552 50995855 NC_060928.1 NC_000004.12 98.12 True relocation, inconsistency = 96768 55144996 55146945 50996537 50998485 NC_060928.1 NC_000004.12 96.41 True indel: indel (> 5bp) 55147115 55153839 50998486 51005208 NC_060928.1 NC_000004.12 96.24 True local misassembly 55153840 55156417 51005891 51008464 NC_060928.1 NC_000004.12 97.05 True relocation, inconsistency = -97792 55059307 55063099 51009146 51012935 NC_060928.1 NC_000004.12 97.76 True local misassembly 55063942 55073461 51013101 51022619 NC_060928.1 NC_000004.12 97.26 True local misassembly 55076196 55077178 51022801 51023783 NC_060928.1 NC_000004.12 98.17 True local misassembly 55077689 55080105 51023784 51026200 NC_060928.1 NC_000004.12 96.19 True local misassembly 55081298 55084349 51026201 51029249 NC_060928.1 NC_000004.12 97.43 True relocation, inconsistency = -4810513 50273837 50280554 51029250 51035963 NC_060928.1 NC_000004.12 98.5 True local misassembly 50280555 50289539 51036813 51045799 NC_060928.1 NC_000004.12 98.21 True local misassembly 50290221 50305893 51045800 51061472 NC_060928.1 NC_000004.12 98.06 True local misassembly 50306575 50318877 51061473 51073778 NC_060928.1 NC_000004.12 98.55 True local misassembly 50318878 50334219 51074289 51089624 NC_060928.1 NC_000004.12 98.53 True local misassembly 50335069 50341501 51089625 51096058 NC_060928.1 NC_000004.12 98.59 True local misassembly 50343028 50345543 51098262 51100774 NC_060928.1 NC_000004.12 97.1 True local misassembly 50345544 50350679 51101966 51107104 NC_060928.1 NC_000004.12 97.53 True fake: scaffold gap size wrong estimation (local) 50351580 50360509 51108700 51117618 NC_060928.1 NC_000004.12 97.55 True local misassembly 50360510 50370750 51117961 51128204 NC_060928.1 NC_000004.12 97.71 True local misassembly 50371432 50386883 51128205 51143646 NC_060928.1 NC_000004.12 98.5 True local misassembly 50389064 50393760 51143954 51148649 NC_060928.1 NC_000004.12 98.66 True local misassembly 50393761 50395126 51149331 51150697 NC_060928.1 NC_000004.12 99.2 True local misassembly 50396999 50399021 51150698 51152723 NC_060928.1 NC_000004.12 98.82 True indel: indel (> 5bp) 50399192 50400832 51152724 51154369 NC_060928.1 NC_000004.12 96.78 True local misassembly 50400833 50409330 51155217 51163715 NC_060928.1 NC_000004.12 97.81 True local misassembly 50410012 50433549 51163716 51187264 NC_060928.1 NC_000004.12 98.37 True relocation, inconsistency = 4620358 55054178 55056511 51187535 51189869 NC_060928.1 NC_000004.12 97.43 True local misassembly 55056512 55057258 51190552 51191298 NC_060928.1 NC_000004.12 96.79 True local misassembly 55061391 55064461 51196784 51199855 NC_060928.1 NC_000004.12 96.65 True local misassembly 55064462 55066932 51200540 51203008 NC_060928.1 NC_000004.12 96.88 True relocation, inconsistency = -54243 55012756 55015948 51203075 51206261 NC_060928.1 NC_000004.12 97.09 True relocation, inconsistency = 86042 55102428 55104979 51206699 51209250 NC_060928.1 NC_000004.12 97.3 True local misassembly 55104980 55107828 51209932 51212780 NC_060928.1 NC_000004.12 97.44 True local misassembly 55107829 55109139 51213465 51214771 NC_060928.1 NC_000004.12 98.02 True local misassembly 55110501 55112635 51214772 51216905 NC_060928.1 NC_000004.12 97.99 True local misassembly 55112636 55115484 51217587 51220434 NC_060928.1 NC_000004.12 96.7 True local misassembly 55115485 55117738 51221119 51223371 NC_060928.1 NC_000004.12 97.03 True local misassembly 55117739 55120556 51224053 51226868 NC_060928.1 NC_000004.12 96.31 True local misassembly 55123306 55127220 51228767 51232682 NC_060928.1 NC_000004.12 97.8 True local misassembly 55127221 55129474 51233368 51235623 NC_060928.1 NC_000004.12 96.81 True local misassembly 55129475 55132207 51236305 51239036 NC_060928.1 NC_000004.12 96.85 True local misassembly 55132208 55134866 51239718 51242376 NC_060928.1 NC_000004.12 97.03 True fake: not a misassembly (possible transposable element) 55117956 55120556 51242988 51245584 NC_060928.1 NC_000004.12 96.62 True fake: not a misassembly (possible transposable element) 55136971 55142480 51245841 51251359 NC_060928.1 NC_000004.12 97.03 True local misassembly 55144556 55147581 51251564 51254589 NC_060928.1 NC_000004.12 96.43 True local misassembly 55148091 55151315 51254590 51257812 NC_060928.1 NC_000004.12 95.6 True relocation, inconsistency = -17174 55134354 55139440 51258025 51263110 NC_060928.1 NC_000004.12 96.91 True indel: indel (> 5bp) 55139612 55145872 51263111 51269374 NC_060928.1 NC_000004.12 97.7 True relocation, inconsistency = -43877 55104757 55107775 51272136 51275155 NC_060928.1 NC_000004.12 96.99 True local misassembly 55107776 55115187 51275837 51283237 NC_060928.1 NC_000004.12 97.41 True local misassembly 55115188 55120583 51283919 51289312 NC_060928.1 NC_000004.12 97.5 True local misassembly 55121599 55125633 51289478 51293506 NC_060928.1 NC_000004.12 97.7 True local misassembly 55127505 55132296 51293507 51298295 NC_060928.1 NC_000004.12 97.62 True relocation, inconsistency = -35380 55097571 55098534 51298950 51299914 NC_060928.1 NC_000004.12 95.85 True local misassembly 55099047 55102609 51299915 51303478 NC_060928.1 NC_000004.12 97.7 True local misassembly 55102610 55104979 51304159 51306527 NC_060928.1 NC_000004.12 96.96 True local misassembly 55104980 55107748 51307209 51309973 NC_060928.1 NC_000004.12 96.93 True local misassembly 55107749 55110380 51311845 51314475 NC_060928.1 NC_000004.12 97.95 True local misassembly 55110381 55112932 51315161 51317711 NC_060928.1 NC_000004.12 98.12 True local misassembly 55112933 55115187 51318396 51320651 NC_060928.1 NC_000004.12 96.9 True local misassembly 55115188 55117738 51321333 51323879 NC_060928.1 NC_000004.12 97.14 True local misassembly 55117739 55120556 51324561 51327376 NC_060928.1 NC_000004.12 96.45 True local misassembly 55121599 55122978 51327566 51328945 NC_060928.1 NC_000004.12 95.43 True local misassembly 55124339 55126165 51328946 51330768 NC_060928.1 NC_000004.12 95.73 True local misassembly 55127526 55129726 51330769 51332968 NC_060928.1 NC_000004.12 97.55 True local misassembly 55131803 55134353 51334364 51336914 NC_060928.1 NC_000004.12 96.83 True relocation, inconsistency = -4857285 50277069 50296220 51336915 51356062 NC_060928.1 NC_000004.12 98.68 True local misassembly 50296902 50310066 51356063 51369219 NC_060928.1 NC_000004.12 98.44 True local misassembly 50310067 50315171 51370413 51375519 NC_060928.1 NC_000004.12 97.34 True local misassembly 50315851 50320969 51375520 51380637 NC_060928.1 NC_000004.12 98.65 True local misassembly 50320970 50337752 51381827 51398604 NC_060928.1 NC_000004.12 98.23 True relocation, inconsistency = 4717302 55055055 55056511 51398605 51400063 NC_060928.1 NC_000004.12 97.6 True local misassembly 55056512 55058839 51400746 51403071 NC_060928.1 NC_000004.12 96.56 True local misassembly 55058840 55060722 51403751 51405637 NC_060928.1 NC_000004.12 96.13 True indel: indel (> 5bp) 55060723 55061795 51405809 51406881 NC_060928.1 NC_000004.12 97.2 True local misassembly 55063942 55069531 51409540 51415128 NC_060928.1 NC_000004.12 96.87 True local misassembly 55069532 55072056 51415810 51418332 NC_060928.1 NC_000004.12 97.47 True fake: scaffold gap size wrong estimation (local) 55072057 55075003 51419169 51422113 NC_060928.1 NC_000004.12 97.39 True local misassembly 55076196 55076994 51422114 51422910 NC_060928.1 NC_000004.12 98.25 True local misassembly 55079070 55079767 51426861 51427558 NC_060928.1 NC_000004.12 98.28 True local misassembly 55079768 55084869 51428245 51433345 NC_060928.1 NC_000004.12 96.92 True relocation, inconsistency = -33336 55052218 55052891 51434030 51434704 NC_060928.1 NC_000004.12 95.11 True local misassembly 55053574 55054257 51434705 51435388 NC_060928.1 NC_000004.12 98.25 True local misassembly 55054258 55056118 51436073 51437933 NC_060928.1 NC_000004.12 95.49 True indel: indel (> 5bp) 55056289 55061910 51437934 51443562 NC_060928.1 NC_000004.12 96.94 True local misassembly 55061911 55064395 51444247 51446732 NC_060928.1 NC_000004.12 97.35 True local misassembly 55064396 55065808 51447415 51448827 NC_060928.1 NC_000004.12 98.02 True local misassembly 55067170 55069043 51448828 51450696 NC_060928.1 NC_000004.12 97.28 True local misassembly 55069044 55074665 51451376 51456999 NC_060928.1 NC_000004.12 97.32 True local misassembly 55074666 55077136 51457684 51460153 NC_060928.1 NC_000004.12 96.84 True local misassembly 55077137 55079680 51460834 51463371 NC_060928.1 NC_000004.12 96.86 True relocation, inconsistency = -40474 55040398 55042990 51464563 51467156 NC_060928.1 NC_000004.12 97.76 True local misassembly 55044564 55047511 51467370 51470321 NC_060928.1 NC_000004.12 98.14 True relocation, inconsistency = 36562 55084755 55087420 51471003 51473669 NC_060928.1 NC_000004.12 96.66 True local misassembly 55088997 55092296 51474734 51478035 NC_060928.1 NC_000004.12 97.79 True local misassembly 55092297 55095043 51478721 51481464 NC_060928.1 NC_000004.12 97.12 True local misassembly 55097104 55102427 51481654 51486977 NC_060928.1 NC_000004.12 98.03 True local misassembly 55102428 55104979 51487659 51490210 NC_060928.1 NC_000004.12 97.26 True local misassembly 55104980 55107826 51490892 51493738 NC_060928.1 NC_000004.12 97.65 True local misassembly 55107827 55110327 51494423 51496920 NC_060928.1 NC_000004.12 97.48 True local misassembly 55110328 55113592 51497602 51500865 NC_060928.1 NC_000004.12 96.88 True relocation, inconsistency = -370163 54744033 54761367 51501469 51518804 NC_060928.1 NC_000004.12 97.87 True fake: not a misassembly (possible transposable element) 55131366 55132215 51518805 51519654 NC_060928.1 NC_000004.12 97.23 True fake: not a misassembly (possible transposable element) 54761368 54766227 51519655 51524519 NC_060928.1 NC_000004.12 97.33 True local misassembly 54766907 54772285 51524520 51529892 NC_060928.1 NC_000004.12 98.22 True local misassembly 54773135 54774293 51529893 51531051 NC_060928.1 NC_000004.12 97.66 True relocation, inconsistency = -33509 54740785 54749101 51531052 51539373 NC_060928.1 NC_000004.12 98.33 True local misassembly 54749783 54758403 51539374 51547998 NC_060928.1 NC_000004.12 98.27 True indel: indel (> 5bp) 54758574 54769304 51547999 51558727 NC_060928.1 NC_000004.12 97.97 True local misassembly 54770154 54772695 51558728 51561266 NC_060928.1 NC_000004.12 96.07 True indel: indel (> 5bp) 54772696 54782307 51561436 51571042 NC_060928.1 NC_000004.12 97.87 True local misassembly 54783069 54783613 51571121 51571665 NC_060928.1 NC_000004.12 97.06 True indel: indel (<= 5bp) 54783723 54791557 51571774 51579597 NC_060928.1 NC_000004.12 98.51 True local misassembly 54792748 54798614 51579598 51585465 NC_060928.1 NC_000004.12 98.5 True local misassembly 54799807 54805612 51585466 51591280 NC_060928.1 NC_000004.12 97.82 True relocation, inconsistency = -4481503 50324867 50327661 51592038 51594834 NC_060928.1 NC_000004.12 98.21 True local misassembly 50328512 50335002 51594835 51601321 NC_060928.1 NC_000004.12 97.07 True local misassembly 50335684 50341206 51601322 51606844 NC_060928.1 NC_000004.12 97.66 True local misassembly 50343078 50350705 51606845 51614475 NC_060928.1 NC_000004.12 97.67 True indel: indel (> 5bp) 50350879 50352535 51614476 51616138 NC_060928.1 NC_000004.12 96.81 True local misassembly 50352536 50364259 51616988 51628700 NC_060928.1 NC_000004.12 97.8 True local misassembly 50366440 50376705 51629008 51639282 NC_060928.1 NC_000004.12 98.01 True local misassembly 50377208 50385681 51640130 51648604 NC_060928.1 NC_000004.12 98.71 True local misassembly 50387724 50392653 51648605 51653534 NC_060928.1 NC_000004.12 98.78 True local misassembly 50392654 50395969 51656086 51659400 NC_060928.1 NC_000004.12 98.22 True indel: indel (> 5bp) 50395970 50405157 51659571 51668771 NC_060928.1 NC_000004.12 97.96 True local misassembly 50405158 50417371 51669112 51681328 NC_060928.1 NC_000004.12 98.19 True local misassembly 50418053 50430274 51681329 51693550 NC_060928.1 NC_000004.12 98.04 True relocation, inconsistency = 4704547 55135530 55136970 51694259 51695698 NC_060928.1 NC_000004.12 95.84 True local misassembly 55136971 55139677 51696378 51699084 NC_060928.1 NC_000004.12 97.04 True local misassembly 55139678 55141831 51699766 51701914 NC_060928.1 NC_000004.12 96.19 True indel: indel (> 5bp) 55142001 55145075 51701915 51704992 NC_060928.1 NC_000004.12 96.72 True local misassembly 55145076 55147581 51705677 51708183 NC_060928.1 NC_000004.12 97.33 True local misassembly 55148091 55151706 51708184 51711791 NC_060928.1 NC_000004.12 95.24 True local misassembly 55152899 55153919 51711792 51712812 NC_060928.1 NC_000004.12 97.75 True local misassembly 55153920 55156470 51713497 51716048 NC_060928.1 NC_000004.12 96.79 True local misassembly 55156471 55157183 51716733 51717445 NC_060928.1 NC_000004.12 95.23 True local misassembly 55158502 55162039 51718251 51721792 NC_060928.1 NC_000004.12 95.26 True local misassembly 55172782 55174108 51733425 51734753 NC_060928.1 NC_000004.12 97.37 True local misassembly 55176482 55177155 51737641 51738314 NC_060928.1 NC_000004.12 97.33 True local misassembly 55177156 55180079 51739334 51742259 NC_060928.1 NC_000004.12 98.15 True relocation, scaffold gap is present, inconsistency = 44567 55276339 62370608 51793952 58878756 NC_060928.1 NC_000004.12 99.63 True relocation, scaffold gap is present, inconsistency = -42128 62371131 69374890 58921407 65936763 NC_060928.1 NC_000004.12 99.5 True local misassembly 69379165 91252300 65937116 87925829 NC_060928.1 NC_000004.12 99.07 True local misassembly 91264054 94335848 87937567 91010406 NC_060928.1 NC_000004.12 99.41 True local misassembly 94336399 95974765 91014951 92649011 NC_060928.1 NC_000004.12 99.26 True local misassembly 95976833 105723400 92649147 102409164 NC_060928.1 NC_000004.12 99.66 True local misassembly 105724455 149009693 102410699 145693871 NC_060928.1 NC_000004.12 99.63 True fake: not a misassembly (possible transposable element) 149009789 149010450 145694533 145693872 NC_060928.1 NC_000004.12 99.85 True fake: not a misassembly (possible transposable element) 149010584 188020191 145694534 184676455 NC_060928.1 NC_000004.12 99.5 True indel: indel (> 5bp) 188020411 191112386 184676667 187764604 NC_060928.1 NC_000004.12 99.08 True local misassembly 191112328 192394415 187764750 189036071 NC_060928.1 NC_000004.12 98.44 True local misassembly 192397182 192736528 189036345 189380444 NC_060928.1 NC_000004.12 95.78 True indel: indel (> 5bp) 192736639 193461379 189380445 190093247 NC_060928.1 NC_000004.12 97.38 True fake: scaffold gap size wrong estimation (local) 193540959 193548080 190173146 190180275 NC_060928.1 NC_000004.12 99.62 True local misassembly 193549928 193564464 190182696 190197231 NC_060928.1 NC_000004.12 99.24 True indel: indel (> 5bp) 193564651 193565215 190197232 190197800 NC_060928.1 NC_000004.12 95.25 True local misassembly 193565586 193570259 190197801 190202477 NC_060928.1 NC_000004.12 98.57 True local misassembly 193570599 193572631 190202478 190204510 NC_060928.1 NC_000004.12 96.56 True CONTIG NC_000004.12 190214555 misassembled 49327164 49536933 209709 1 NC_060928.1 NT_113793.3 99.95 True CONTIG NT_113793.3 209709 correct 2294 17472807 11896 17529932 NC_060929.1 NC_000005.10 98.74 True relocation, scaffold gap is present, inconsistency = 48139 17571606 29174447 17580592 29069210 NC_060929.1 NC_000005.10 98.67 True relocation, inconsistency = 8918 29183676 32970064 29069521 32856066 NC_060929.1 NC_000005.10 99.71 True local misassembly 32971628 46686347 32856620 46435325 NC_060929.1 NC_000005.10 98.71 True relocation, scaffold gap is present, inconsistency = 3350640 50170825 50187100 46569163 46585440 NC_060929.1 NC_000005.10 98.1 True local misassembly 50188809 50200002 46585441 46596635 NC_060929.1 NC_000005.10 97.67 True indel: indel (> 5bp) 50200173 50207866 46596636 46604330 NC_060929.1 NC_000005.10 98.18 True local misassembly 50209913 50217396 46604331 46611815 NC_060929.1 NC_000005.10 98.82 True local misassembly 50221321 50229244 46611816 46619736 NC_060929.1 NC_000005.10 97.96 True local misassembly 50233168 50237518 46619737 46624090 NC_060929.1 NC_000005.10 97.73 True fake: scaffold gap size wrong estimation (local) 50237690 50241332 46624429 46628071 NC_060929.1 NC_000005.10 97.69 True local misassembly 50242529 50248090 46628072 46633634 NC_060929.1 NC_000005.10 98.2 True indel: indel (> 5bp) 50248261 50254057 46633635 46639435 NC_060929.1 NC_000005.10 98.41 True local misassembly 50256843 50265911 46639663 46648737 NC_060929.1 NC_000005.10 97.95 True indel: indel (> 5bp) 50266082 50306933 46648738 46689594 NC_060929.1 NC_000005.10 98.42 True relocation, inconsistency = -99431 50208164 50209524 46690256 46691618 NC_060929.1 NC_000005.10 98.02 True relocation, inconsistency = 115961 50326286 50350375 46692419 46716688 NC_060929.1 NC_000005.10 95.16 True relocation, inconsistency = -107255 50243121 50322095 46716689 46796725 NC_060929.1 NC_000005.10 96.15 True translocation, scaffold gap is present 25342204 25344098 46796826 46798720 NC_060943.1 NC_000005.10 96.57 True relocation, inconsistency = -22492 25322530 25323848 46799644 46800961 NC_060943.1 NC_000005.10 96.36 True relocation, inconsistency = 14652 25338501 25339629 46800962 46802093 NC_060943.1 NC_000005.10 95.21 True local misassembly 25340313 25341005 46802094 46802785 NC_060943.1 NC_000005.10 96.39 True local misassembly 25341347 25344098 46802786 46805535 NC_060943.1 NC_000005.10 96.8 True relocation, inconsistency = -14657 25330365 25331583 46806459 46807676 NC_060943.1 NC_000005.10 96.31 True local misassembly 25333118 25334346 46807677 46808907 NC_060943.1 NC_000005.10 95.86 True local misassembly 25335030 25335722 46808908 46809599 NC_060943.1 NC_000005.10 96.68 True relocation, inconsistency = 26249 25361972 25364146 46809600 46811772 NC_060943.1 NC_000005.10 98.48 True local misassembly 25365169 25371028 46811773 46817633 NC_060943.1 NC_000005.10 98.74 True indel: indel (> 5bp) 25371200 25375659 46817634 46822092 NC_060943.1 NC_000005.10 97.96 True local misassembly 25377303 25377995 46822884 46823575 NC_060943.1 NC_000005.10 96.68 True local misassembly 25378337 25381578 46823576 46826815 NC_060943.1 NC_000005.10 98.52 True indel: indel (> 5bp) 25381579 25389296 46826989 46834708 NC_060943.1 NC_000005.10 99.17 True local misassembly 25389297 25398132 46835223 46844059 NC_060943.1 NC_000005.10 99.75 True indel: indel (> 5bp) 25398304 25403587 46844060 46849340 NC_060943.1 NC_000005.10 98.66 True indel: indel (> 5bp) 25403759 25414467 46849341 46860050 NC_060943.1 NC_000005.10 99.33 True indel: indel (> 5bp) 25414639 25416179 46860051 46861591 NC_060943.1 NC_000005.10 98.38 True local misassembly 25416521 25420102 46861592 46865171 NC_060943.1 NC_000005.10 98.72 True local misassembly 25421298 25436218 46865172 46880092 NC_060943.1 NC_000005.10 99.04 True indel: indel (> 5bp) 25436219 25441502 46880264 46885548 NC_060943.1 NC_000005.10 99.6 True indel: indel (> 5bp) 25441503 25446931 46885720 46891150 NC_060943.1 NC_000005.10 98.97 True local misassembly 25447444 25448225 46891151 46891931 NC_060943.1 NC_000005.10 95.27 True local misassembly 25448567 25452148 46891932 46895512 NC_060943.1 NC_000005.10 98.63 True local misassembly 25453515 25458522 46895513 46900519 NC_060943.1 NC_000005.10 99.22 True local misassembly 25459479 25478277 46900794 46919593 NC_060943.1 NC_000005.10 98.69 True relocation, inconsistency = -29489 25450904 25455596 46921709 46926403 NC_060943.1 NC_000005.10 98.74 True local misassembly 25451336 25451970 46926404 46927037 NC_060943.1 NC_000005.10 95.91 True indel: indel (> 5bp) 25452140 25462254 46927038 46937152 NC_060943.1 NC_000005.10 98.8 True relocation, inconsistency = 21307 25483667 25496756 46937258 46950346 NC_060943.1 NC_000005.10 99.53 True local misassembly 25498291 25499357 46950347 46951412 NC_060943.1 NC_000005.10 96.34 True local misassembly 25500396 25501067 46951599 46952269 NC_060943.1 NC_000005.10 96.58 True local misassembly 25501409 25502942 46952270 46953801 NC_060943.1 NC_000005.10 96.68 True local misassembly 25506363 25509672 46954325 46957635 NC_060943.1 NC_000005.10 98.67 True local misassembly 25511297 25512265 46958068 46959035 NC_060943.1 NC_000005.10 97.21 True local misassembly 25514652 25518576 46959036 46962964 NC_060943.1 NC_000005.10 98.96 True local misassembly 25520111 25521355 46962965 46964209 NC_060943.1 NC_000005.10 98.63 True local misassembly 25522722 25524031 46964210 46965519 NC_060943.1 NC_000005.10 98.32 True relocation, inconsistency = -62218 25461814 25468671 46965520 46972376 NC_060943.1 NC_000005.10 99.52 True local misassembly 25475151 25479101 46972377 46976329 NC_060943.1 NC_000005.10 97.96 True indel: indel (> 5bp) 25479102 25485846 46976501 46983245 NC_060943.1 NC_000005.10 98.49 True local misassembly 25487381 25489299 46983246 46985163 NC_060943.1 NC_000005.10 99.43 True local misassembly 25490495 25493276 46985164 46987944 NC_060943.1 NC_000005.10 97.41 True local misassembly 25498837 25499388 46988050 46988602 NC_060943.1 NC_000005.10 95.12 True local misassembly 25500396 25505010 46988758 46993373 NC_060943.1 NC_000005.10 98.48 True indel: indel (> 5bp) 25505182 25507523 46993374 46995714 NC_060943.1 NC_000005.10 99.32 True relocation, inconsistency = 55902 25563426 25563948 46995715 46996237 NC_060943.1 NC_000005.10 97.27 True local misassembly 25565482 25566150 46996238 46996907 NC_060943.1 NC_000005.10 95.88 True relocation, inconsistency = -69537 25496614 25504843 46996908 47005137 NC_060943.1 NC_000005.10 99.14 True local misassembly 25505851 25515900 47005293 47015342 NC_060943.1 NC_000005.10 99.13 True local misassembly 25517267 25518576 47015343 47016652 NC_060943.1 NC_000005.10 97.86 True local misassembly 25520111 25531060 47016653 47027601 NC_060943.1 NC_000005.10 98.67 True local misassembly 25534985 25538770 47027602 47031387 NC_060943.1 NC_000005.10 97.2 True indel: indel (> 5bp) 25538940 25539771 47031388 47032219 NC_060943.1 NC_000005.10 98.2 True fake: scaffold gap size wrong estimation (local) 25540952 25544905 47033321 47037276 NC_060943.1 NC_000005.10 98.41 True indel: indel (> 5bp) 25545077 25547825 47037277 47040029 NC_060943.1 NC_000005.10 97.57 True indel: stretch of mismatches 25547931 25548482 47040135 47040686 NC_060943.1 NC_000005.10 95.47 True indel: indel (> 5bp) 25548483 25549973 47040856 47042347 NC_060943.1 NC_000005.10 97.92 True local misassembly 25552698 25554639 47042348 47044289 NC_060943.1 NC_000005.10 98.87 True local misassembly 25557986 25558677 47045933 47046625 NC_060943.1 NC_000005.10 96.68 True local misassembly 25558678 25561425 47046967 47049715 NC_060943.1 NC_000005.10 96.25 True local misassembly 25564800 25565516 47051218 47051934 NC_060943.1 NC_000005.10 98.05 True local misassembly 25572331 25574854 47052276 47054801 NC_060943.1 NC_000005.10 97.31 True relocation, inconsistency = 35430 25610285 25611482 47054802 47055999 NC_060943.1 NC_000005.10 97.91 True local misassembly 25614208 25616596 47056000 47058388 NC_060943.1 NC_000005.10 97.95 True local misassembly 25616938 25618501 47058389 47059954 NC_060943.1 NC_000005.10 97.06 True local misassembly 25618502 25619492 47060296 47061288 NC_060943.1 NC_000005.10 97.58 True relocation, scaffold gap is present, inconsistency = -87609 25579119 25581894 47108524 47111299 NC_060943.1 NC_000005.10 97.66 True local misassembly 25584026 25585282 47114963 47116220 NC_060943.1 NC_000005.10 96.1 True indel: indel (> 5bp) 25585929 25588678 47116701 47119452 NC_060943.1 NC_000005.10 97.31 True indel: stretch of mismatches 25588810 25589399 47119584 47120173 NC_060943.1 NC_000005.10 97.12 True local misassembly 25592773 25595492 47122355 47125075 NC_060943.1 NC_000005.10 97.32 True local misassembly 25598673 25599933 47128767 47130028 NC_060943.1 NC_000005.10 95.56 True indel: indel (> 5bp) 25600580 25603353 47130504 47133278 NC_060943.1 NC_000005.10 97.12 True local misassembly 25605487 25606747 47136944 47138206 NC_060943.1 NC_000005.10 96.28 True indel: indel (> 5bp) 25607394 25610121 47138682 47141410 NC_060943.1 NC_000005.10 97.47 True local misassembly 25617089 25617820 47141564 47142294 NC_060943.1 NC_000005.10 97.4 True local misassembly 25618757 25620460 47142889 47144594 NC_060943.1 NC_000005.10 96.13 True relocation, inconsistency = -8516 25612313 25613561 47144963 47146212 NC_060943.1 NC_000005.10 95.6 True indel: indel (> 5bp) 25614208 25616934 47146688 47149415 NC_060943.1 NC_000005.10 97.03 True indel: stretch of mismatches 25617089 25617820 47149570 47150302 NC_060943.1 NC_000005.10 97.68 True indel: indel (> 5bp) 25618467 25620456 47150779 47152770 NC_060943.1 NC_000005.10 95.98 True translocation, scaffold gap is present 46891657 46918070 47153440 47179857 NC_060929.1 NC_000005.10 98.74 True local misassembly 46918411 46934390 47179858 47195839 NC_060929.1 NC_000005.10 99.33 True local misassembly 46934731 46942550 47195840 47203659 NC_060929.1 NC_000005.10 99.16 True local misassembly 46942551 46948435 47204000 47209880 NC_060929.1 NC_000005.10 99.1 True local misassembly 46949796 46952681 47209881 47212765 NC_060929.1 NC_000005.10 96.26 True local misassembly 46953023 46955866 47212766 47215612 NC_060929.1 NC_000005.10 98.67 True local misassembly 46955867 46960941 47216293 47221367 NC_060929.1 NC_000005.10 99.37 True local misassembly 46961282 46967131 47221368 47227217 NC_060929.1 NC_000005.10 99.21 True indel: indel (> 5bp) 46967132 46979595 47227385 47239847 NC_060929.1 NC_000005.10 99.0 True local misassembly 46980616 46982361 47239848 47241593 NC_060929.1 NC_000005.10 98.22 True local misassembly 46982362 46987429 47241934 47246996 NC_060929.1 NC_000005.10 98.72 True local misassembly 46987770 47020069 47246997 47279304 NC_060929.1 NC_000005.10 98.71 True local misassembly 47020070 47036491 47279645 47296069 NC_060929.1 NC_000005.10 98.76 True relocation, scaffold gap is present, inconsistency = 2301622 49352051 49354445 47310007 47312407 NC_060929.1 NC_000005.10 95.17 True translocation 28389759 28394824 47326774 47331841 NC_060943.1 NC_000005.10 95.3 True translocation 125989050 125989811 47332050 47332812 NC_060925.1 NC_000005.10 96.99 True translocation 48230287 48230826 47334513 47335052 NC_060929.1 NC_000005.10 97.59 True relocation, inconsistency = 1288584 49520911 49521790 47336553 47337433 NC_060929.1 NC_000005.10 96.14 True translocation 121840202 121840940 47348796 47349534 NC_060925.1 NC_000005.10 96.08 True translocation 28855377 28862102 47352155 47358884 NC_060943.1 NC_000005.10 95.37 True relocation, inconsistency = 148927 29011030 29011590 47358885 47359445 NC_060943.1 NC_000005.10 95.36 True translocation 49454315 49456090 47374638 47376413 NC_060929.1 NC_000005.10 95.72 True local misassembly 49456091 49458791 47376754 47379456 NC_060929.1 NC_000005.10 95.52 True relocation, inconsistency = 78830 49543002 49545004 47384837 47386839 NC_060929.1 NC_000005.10 95.36 True relocation, inconsistency = -2378604 47172924 47174625 47393363 47395065 NC_060929.1 NC_000005.10 96.07 True translocation 121996452 121997210 47420431 47421189 NC_060925.1 NC_000005.10 95.78 True translocation 29738266 29738964 47424928 47425626 NC_060943.1 NC_000005.10 99.0 True translocation 49401745 49403359 47444075 47445689 NC_060929.1 NC_000005.10 96.16 True fake: not a misassembly (possible transposable element) 49281181 49283559 47454991 47457367 NC_060929.1 NC_000005.10 95.04 True fake: not a misassembly (possible transposable element) 49415931 49418135 47464044 47466252 NC_060929.1 NC_000005.10 96.24 True local misassembly 49418475 49420328 47466253 47468111 NC_060929.1 NC_000005.10 95.21 True translocation 123201444 123202231 47471190 47471977 NC_060925.1 NC_000005.10 96.57 True translocation 49415895 49418486 47472174 47474767 NC_060929.1 NC_000005.10 95.59 True translocation 27811094 27815456 47474768 47479136 NC_060943.1 NC_000005.10 95.06 True translocation 126285558 126286306 47479137 47479885 NC_060925.1 NC_000005.10 96.04 True relocation, inconsistency = -390065 125898394 125902191 47482038 47485840 NC_060925.1 NC_000005.10 95.42 True local misassembly 125902531 125903584 47485841 47486895 NC_060925.1 NC_000005.10 96.97 True translocation 48816685 48817674 47490262 47491252 NC_060929.1 NC_000005.10 96.17 True local misassembly 48817675 48819384 47491592 47493301 NC_060929.1 NC_000005.10 95.67 True local misassembly 48822429 48823280 47496351 47497201 NC_060929.1 NC_000005.10 96.33 True translocation 126225459 126227731 47497202 47499479 NC_060925.1 NC_000005.10 95.74 True translocation 29248006 29250200 47509237 47511432 NC_060943.1 NC_000005.10 95.72 True translocation 126295291 126295847 47511654 47512210 NC_060925.1 NC_000005.10 95.87 True translocation 28703428 28704470 47523864 47524907 NC_060943.1 NC_000005.10 96.71 True translocation 49400647 49402145 47524908 47526406 NC_060929.1 NC_000005.10 95.73 True local misassembly 49404040 49405235 47528301 47529496 NC_060929.1 NC_000005.10 97.51 True translocation 124047992 124049315 47529497 47530821 NC_060925.1 NC_000005.10 95.55 True translocation 49428720 49430123 47534981 47536386 NC_060929.1 NC_000005.10 95.16 True local misassembly 49432776 49435150 47539378 47541753 NC_060929.1 NC_000005.10 95.45 True relocation, inconsistency = -1585193 47865268 47871247 47557064 47563043 NC_060929.1 NC_000005.10 95.24 True translocation 125926163 125929067 47565229 47568131 NC_060925.1 NC_000005.10 95.11 True translocation 49427492 49431409 47573527 47577450 NC_060929.1 NC_000005.10 95.8 True translocation 125915723 125918860 47579262 47582403 NC_060925.1 NC_000005.10 95.16 True relocation, inconsistency = -1817967 124115197 124116275 47596707 47597784 NC_060925.1 NC_000005.10 96.66 True translocation 27337950 27341093 47603652 47606797 NC_060943.1 NC_000005.10 96.0 True translocation 123973554 123980803 47607354 47614601 NC_060925.1 NC_000005.10 95.56 True relocation, inconsistency = -10877 123978788 123980910 47623463 47625586 NC_060925.1 NC_000005.10 96.85 True relocation, inconsistency = -478248 123504143 123505806 47627067 47628734 NC_060925.1 NC_000005.10 95.62 True translocation 29669335 29670698 47635418 47636781 NC_060943.1 NC_000005.10 97.36 True translocation 121854584 121857058 47650674 47653151 NC_060925.1 NC_000005.10 95.2 True translocation 49553056 49554557 47656008 47657507 NC_060929.1 NC_000005.10 95.41 True local misassembly 49555238 49555921 47658869 47659553 NC_060929.1 NC_000005.10 96.79 True translocation 125396656 125399288 47663073 47660442 NC_060925.1 NC_000005.10 95.18 True relocation, inconsistency = 1263602 124122447 124124513 47671614 47673681 NC_060925.1 NC_000005.10 95.79 True translocation 48354630 48355995 47674502 47675869 NC_060929.1 NC_000005.10 95.69 True local misassembly 48355996 48357798 47676551 47678353 NC_060929.1 NC_000005.10 96.06 True translocation 29299181 29302055 47694397 47697273 NC_060943.1 NC_000005.10 96.0 True translocation 49494374 49495427 47703699 47704753 NC_060929.1 NC_000005.10 96.02 True local misassembly 49495428 49497081 47705094 47706749 NC_060929.1 NC_000005.10 95.11 True translocation 126272830 126274257 47716284 47717711 NC_060925.1 NC_000005.10 95.52 True relocation, inconsistency = -4215936 122060409 122064940 47719799 47724333 NC_060925.1 NC_000005.10 95.28 True translocation 29353905 29354768 47733488 47734352 NC_060943.1 NC_000005.10 95.49 True translocation 122205484 122210478 47747563 47752560 NC_060925.1 NC_000005.10 96.44 True relocation, inconsistency = 3916319 126128146 126129181 47753909 47754944 NC_060925.1 NC_000005.10 95.24 True relocation, inconsistency = -263517 125865665 125871027 47754945 47760305 NC_060925.1 NC_000005.10 95.14 True translocation 47629412 47632055 47760306 47762949 NC_060929.1 NC_000005.10 96.07 True relocation, inconsistency = 1791740 49424081 49425374 47763235 47764530 NC_060929.1 NC_000005.10 96.38 True translocation 121948905 121949808 47774229 47775131 NC_060925.1 NC_000005.10 95.02 True local misassembly 121949809 121953609 47775474 47779278 NC_060925.1 NC_000005.10 95.35 True translocation 49424178 49425978 47788151 47789954 NC_060929.1 NC_000005.10 95.68 True relocation, inconsistency = 98531 49524988 49526688 47790433 47792132 NC_060929.1 NC_000005.10 95.24 True local misassembly 49526689 49527552 47792472 47793334 NC_060929.1 NC_000005.10 95.6 True relocation, inconsistency = -587392 48941336 48942194 47794510 47795369 NC_060929.1 NC_000005.10 95.93 True local misassembly 48942195 48942966 47795710 47796481 NC_060929.1 NC_000005.10 97.15 True local misassembly 48943306 48944793 47796482 47797969 NC_060929.1 NC_000005.10 96.17 True local misassembly 48946737 48948116 47799913 47801292 NC_060929.1 NC_000005.10 96.16 True translocation 29250600 29251493 47806581 47807478 NC_060943.1 NC_000005.10 95.88 True translocation 49086075 49089657 47811154 47814737 NC_060929.1 NC_000005.10 95.01 True translocation 29250414 29252076 47834255 47835922 NC_060943.1 NC_000005.10 95.14 True local misassembly 29252416 29253772 47835923 47837279 NC_060943.1 NC_000005.10 96.02 True local misassembly 29254108 29254927 47837280 47838100 NC_060943.1 NC_000005.10 96.95 True translocation 124736994 124739013 47846470 47844450 NC_060925.1 NC_000005.10 95.2 True translocation 49378569 49381986 47846492 47849917 NC_060929.1 NC_000005.10 95.1 True local misassembly 49381987 49383267 47850260 47851541 NC_060929.1 NC_000005.10 95.24 True translocation 29147981 29148631 47866768 47867417 NC_060943.1 NC_000005.10 95.85 True translocation 49322713 49323360 47873547 47874194 NC_060929.1 NC_000005.10 96.14 True relocation, inconsistency = 105305 49428666 49430053 47874195 47875585 NC_060929.1 NC_000005.10 95.4 True translocation 29235771 29237575 47881451 47883255 NC_060943.1 NC_000005.10 95.24 True translocation 49088862 49090202 47883952 47885292 NC_060929.1 NC_000005.10 96.05 True translocation 124613721 124614902 47889872 47888692 NC_060925.1 NC_000005.10 95.9 True relocation, inconsistency = 754184 123858037 123859536 47889873 47891376 NC_060925.1 NC_000005.10 96.28 True local misassembly 123859537 123861285 47891717 47893463 NC_060925.1 NC_000005.10 96.05 True relocation, inconsistency = -1675077 122190209 122191724 47897464 47898980 NC_060925.1 NC_000005.10 95.78 True local misassembly 122192066 122192771 47898981 47899686 NC_060925.1 NC_000005.10 96.41 True translocation 25930401 25933416 47899687 47902703 NC_060943.1 NC_000005.10 95.13 True translocation 49446164 49447584 47906494 47907914 NC_060929.1 NC_000005.10 97.11 True translocation 125965571 125967971 47908410 47910807 NC_060925.1 NC_000005.10 95.25 True relocation, inconsistency = -95467 125886752 125890536 47925055 47928843 NC_060925.1 NC_000005.10 95.88 True relocation, inconsistency = -4013904 121890873 121891878 47943084 47944094 NC_060925.1 NC_000005.10 95.05 True relocation, inconsistency = -60634 121834089 121834827 47946939 47947678 NC_060925.1 NC_000005.10 95.41 True relocation, inconsistency = 2222226 124057944 124059571 47948569 47950193 NC_060925.1 NC_000005.10 95.39 True translocation 29643671 29645465 47953904 47955694 NC_060943.1 NC_000005.10 95.82 True relocation, inconsistency = 11540 29674727 29676176 47973416 47974870 NC_060943.1 NC_000005.10 95.33 True local misassembly 29676517 29677464 47974871 47975819 NC_060943.1 NC_000005.10 95.89 True translocation 49389075 49389774 47975820 47976519 NC_060929.1 NC_000005.10 95.01 True local misassembly 49389775 49391195 47976859 47978282 NC_060929.1 NC_000005.10 95.37 True relocation, inconsistency = 112450 49510376 49511734 47985013 47986376 NC_060929.1 NC_000005.10 95.45 True translocation 123841804 123843031 47987359 47988589 NC_060925.1 NC_000005.10 95.04 True local misassembly 123843032 123843950 47988931 47989849 NC_060925.1 NC_000005.10 96.19 True relocation, inconsistency = 63561 123907620 123909947 47989958 47992287 NC_060925.1 NC_000005.10 96.22 True translocation 49451077 49451764 47995380 47996069 NC_060929.1 NC_000005.10 96.96 True local misassembly 49452104 49453594 47996070 47997562 NC_060929.1 NC_000005.10 95.58 True local misassembly 49453595 49454314 47998242 47998961 NC_060929.1 NC_000005.10 96.67 True translocation 25930401 25931612 48013744 48014957 NC_060943.1 NC_000005.10 95.3 True local misassembly 25931953 25933488 48014958 48016493 NC_060943.1 NC_000005.10 95.25 True translocation 124877929 124878444 48026629 48026114 NC_060925.1 NC_000005.10 96.32 True indel: indel (> 5bp) 124876989 124877899 48027538 48026630 NC_060925.1 NC_000005.10 96.05 True relocation, inconsistency = 1762682 123101797 123103189 48038656 48040049 NC_060925.1 NC_000005.10 96.27 True local misassembly 123103190 123104874 48040390 48042074 NC_060925.1 NC_000005.10 96.56 True relocation, inconsistency = -177049 122932466 122933887 48046715 48048135 NC_060925.1 NC_000005.10 96.34 True relocation, inconsistency = 969065 123903904 123905388 48049087 48050569 NC_060925.1 NC_000005.10 96.9 True translocation 48699451 48700131 48052282 48052963 NC_060929.1 NC_000005.10 96.19 True translocation 122032183 122033714 48056146 48057680 NC_060925.1 NC_000005.10 96.55 True local misassembly 122034055 122035250 48057681 48058873 NC_060925.1 NC_000005.10 95.65 True relocation, inconsistency = 215953 122253646 122254634 48061316 48062303 NC_060925.1 NC_000005.10 96.26 True local misassembly 122254975 122256638 48062304 48063963 NC_060925.1 NC_000005.10 95.31 True translocation 49456496 49458034 48086242 48087781 NC_060929.1 NC_000005.10 95.91 True relocation, inconsistency = 74416 49533313 49534226 48088644 48089557 NC_060929.1 NC_000005.10 95.51 True translocation 123913447 123914410 48089721 48090684 NC_060925.1 NC_000005.10 96.68 True translocation 49430877 49432078 48110744 48111944 NC_060929.1 NC_000005.10 95.09 True local misassembly 49432079 49434614 48112285 48114819 NC_060929.1 NC_000005.10 96.14 True translocation 29682922 29684620 48115501 48117199 NC_060943.1 NC_000005.10 95.59 True local misassembly 29684960 29686781 48117200 48119021 NC_060943.1 NC_000005.10 95.06 True fake: not a misassembly (possible transposable element) 49105781 49106796 48121966 48122982 NC_060929.1 NC_000005.10 95.97 True fake: not a misassembly (possible transposable element) 29695879 29697929 48129489 48131541 NC_060943.1 NC_000005.10 95.62 True relocation, inconsistency = 7801 29716219 29717289 48142030 48143101 NC_060943.1 NC_000005.10 95.71 True translocation 47266320 47267805 48143717 48145200 NC_060929.1 NC_000005.10 95.42 True relocation, inconsistency = 2061624 49330877 49332688 48146648 48148462 NC_060929.1 NC_000005.10 95.48 True translocation 29675955 29678013 48153743 48155800 NC_060943.1 NC_000005.10 95.24 True translocation 126261786 126263333 48165256 48166805 NC_060925.1 NC_000005.10 95.23 True translocation 49283441 49284852 48167499 48168913 NC_060929.1 NC_000005.10 95.9 True translocation 123199264 123200825 48169402 48170961 NC_060925.1 NC_000005.10 95.58 True relocation, inconsistency = -444569 122756257 122757276 48170962 48171981 NC_060925.1 NC_000005.10 96.2 True relocation, inconsistency = 689650 123448426 123449423 48173481 48174478 NC_060925.1 NC_000005.10 95.69 True local misassembly 123449764 123451290 48174479 48176003 NC_060925.1 NC_000005.10 95.17 True translocation 48696061 48698097 48176004 48178040 NC_060929.1 NC_000005.10 95.14 True local misassembly 48698098 48699458 48178380 48179742 NC_060929.1 NC_000005.10 95.89 True local misassembly 48700132 48700993 48180415 48181276 NC_060929.1 NC_000005.10 96.52 True local misassembly 48701331 48702233 48181277 48182179 NC_060929.1 NC_000005.10 95.79 True relocation, inconsistency = -1308059 47394474 47395141 48182479 48183146 NC_060929.1 NC_000005.10 96.11 True local misassembly 47395142 47396021 48183487 48184366 NC_060929.1 NC_000005.10 96.84 True translocation 123987193 123988454 48184367 48185628 NC_060925.1 NC_000005.10 96.43 True local misassembly 123988455 123990555 48185969 48188069 NC_060925.1 NC_000005.10 95.24 True local misassembly 123990556 123992133 48188410 48189991 NC_060925.1 NC_000005.10 95.13 True relocation, inconsistency = -1646510 122346246 122347660 48190614 48192023 NC_060925.1 NC_000005.10 95.27 True translocation 49456519 49457708 48192470 48193659 NC_060929.1 NC_000005.10 96.13 True local misassembly 49458049 49459458 48193660 48195066 NC_060929.1 NC_000005.10 95.11 True translocation 126209304 126210688 48197711 48199096 NC_060925.1 NC_000005.10 96.39 True local misassembly 126210689 126212371 48199437 48201121 NC_060925.1 NC_000005.10 95.73 True translocation 47230973 47232024 48201122 48202173 NC_060929.1 NC_000005.10 97.35 True local misassembly 47232365 47233490 48202174 48203303 NC_060929.1 NC_000005.10 95.13 True translocation 125086441 125089158 48215415 48212699 NC_060925.1 NC_000005.10 95.25 True local misassembly 125085017 125086100 48216498 48215416 NC_060925.1 NC_000005.10 95.94 True relocation, inconsistency = 3086612 121976179 121977394 48237509 48238724 NC_060925.1 NC_000005.10 96.79 True relocation, inconsistency = 2573529 124559440 124561025 48248826 48247241 NC_060925.1 NC_000005.10 95.08 True translocation 47617397 47618328 48257559 48258490 NC_060929.1 NC_000005.10 96.89 True translocation 121922518 121923693 48268840 48270016 NC_060925.1 NC_000005.10 96.86 True relocation, inconsistency = 1370623 123301231 123301939 48276931 48277640 NC_060925.1 NC_000005.10 96.34 True translocation 26001827 26003879 48277986 48280039 NC_060943.1 NC_000005.10 95.42 True translocation 124045660 124049336 48280040 48283717 NC_060925.1 NC_000005.10 95.03 True relocation, inconsistency = 1929766 125980831 125982160 48285446 48286775 NC_060925.1 NC_000005.10 97.15 True indel: stretch of mismatches 125982538 125984099 48287153 48288714 NC_060925.1 NC_000005.10 95.39 True translocation 47501861 47502556 48300551 48301246 NC_060929.1 NC_000005.10 95.55 True translocation 124159352 124160039 48303131 48302444 NC_060925.1 NC_000005.10 95.06 True translocation 47613622 47614972 48306293 48307643 NC_060929.1 NC_000005.10 96.08 True translocation 29633275 29634716 48309695 48311140 NC_060943.1 NC_000005.10 95.16 True translocation 124243522 124244475 48313708 48312754 NC_060925.1 NC_000005.10 96.65 True translocation 28411301 28412845 48318781 48320330 NC_060943.1 NC_000005.10 95.81 True relocation, inconsistency = 913760 29343368 29343942 48337093 48337667 NC_060943.1 NC_000005.10 97.57 True translocation 49060618 49062074 48354275 48355736 NC_060929.1 NC_000005.10 96.1 True relocation, inconsistency = -273152 48792199 48793681 48359013 48360496 NC_060929.1 NC_000005.10 95.15 True translocation 29648602 29649678 48398436 48399513 NC_060943.1 NC_000005.10 96.66 True translocation 49422747 49423765 48413417 48414436 NC_060929.1 NC_000005.10 96.86 True local misassembly 49424106 49425563 48414437 48415897 NC_060929.1 NC_000005.10 95.62 True translocation 29713456 29715991 48425598 48428132 NC_060943.1 NC_000005.10 95.74 True translocation 122267345 122270223 48431713 48434593 NC_060925.1 NC_000005.10 95.52 True translocation 29633275 29634648 48464012 48465388 NC_060943.1 NC_000005.10 96.8 True relocation, inconsistency = -1083187 28560217 28560717 48474144 48474644 NC_060943.1 NC_000005.10 95.02 True translocation 126267542 126268576 48486255 48487292 NC_060925.1 NC_000005.10 96.05 True local misassembly 126268577 126270126 48487634 48489183 NC_060925.1 NC_000005.10 97.23 True translocation 25906760 25907632 48506504 48507378 NC_060943.1 NC_000005.10 95.66 True translocation 49480813 49482171 48513334 48514692 NC_060929.1 NC_000005.10 96.03 True relocation, inconsistency = -69644 49419022 49420051 48521187 48522214 NC_060929.1 NC_000005.10 96.12 True translocation 123911856 123913339 48522840 48524324 NC_060925.1 NC_000005.10 95.02 True local misassembly 123913340 123915045 48524665 48526368 NC_060925.1 NC_000005.10 96.42 True translocation 49424081 49425119 48526923 48527964 NC_060929.1 NC_000005.10 95.49 True local misassembly 49425460 49426127 48527965 48528632 NC_060929.1 NC_000005.10 97.01 True local misassembly 49426128 49427404 48528974 48530248 NC_060929.1 NC_000005.10 96.16 True translocation 25908833 25910576 48567546 48569291 NC_060943.1 NC_000005.10 96.11 True translocation 49427964 49429034 48576525 48577596 NC_060929.1 NC_000005.10 95.8 True translocation 25964197 25964905 48584170 48584878 NC_060943.1 NC_000005.10 95.77 True local misassembly 25968474 25969026 48588109 48588661 NC_060943.1 NC_000005.10 96.56 True translocation 48972258 48973925 48589300 48590967 NC_060929.1 NC_000005.10 95.14 True local misassembly 48973926 48974650 48591308 48592035 NC_060929.1 NC_000005.10 98.63 True local misassembly 48974991 48976314 48592036 48593360 NC_060929.1 NC_000005.10 95.55 True translocation 29678990 29679741 48607974 48608725 NC_060943.1 NC_000005.10 96.54 True translocation 124216918 124217754 48619055 48618219 NC_060925.1 NC_000005.10 95.58 True local misassembly 124205690 124207237 48629959 48628410 NC_060925.1 NC_000005.10 96.52 True relocation, inconsistency = 2079604 126287798 126288459 48630916 48631578 NC_060925.1 NC_000005.10 95.55 True relocation, inconsistency = 2007969 124277358 124279828 48634049 48631579 NC_060925.1 NC_000005.10 96.68 True relocation, inconsistency = 2410955 121857474 121858338 48642114 48642980 NC_060925.1 NC_000005.10 97.12 True translocation 25952329 25954152 48643336 48645161 NC_060943.1 NC_000005.10 96.55 True relocation, inconsistency = 3676560 29633718 29634665 48648167 48649113 NC_060943.1 NC_000005.10 96.52 True local misassembly 29635005 29638106 48649114 48652217 NC_060943.1 NC_000005.10 95.43 True translocation 49530911 49532125 48654357 48655571 NC_060929.1 NC_000005.10 95.14 True relocation, inconsistency = -263291 49271214 49272940 48657951 48659678 NC_060929.1 NC_000005.10 96.99 True local misassembly 49272941 49273915 48660018 48660996 NC_060929.1 NC_000005.10 95.3 True local misassembly 49274255 49274959 48660997 48661702 NC_060929.1 NC_000005.10 95.47 True translocation 122198008 122199210 48670146 48671350 NC_060925.1 NC_000005.10 97.43 True local misassembly 122199552 122200824 48671351 48672625 NC_060925.1 NC_000005.10 96.0 True translocation 48716437 48719492 48673243 48676302 NC_060929.1 NC_000005.10 95.42 True relocation, inconsistency = 679106 49400642 49401489 48678346 48679194 NC_060929.1 NC_000005.10 95.05 True relocation, inconsistency = -1876351 47526331 47527017 48680387 48681074 NC_060929.1 NC_000005.10 95.78 True local misassembly 47527018 47528028 48681415 48682425 NC_060929.1 NC_000005.10 96.04 True local misassembly 47531091 47532108 48685487 48686504 NC_060929.1 NC_000005.10 96.27 True local misassembly 47532449 47533450 48686505 48687507 NC_060929.1 NC_000005.10 96.01 True relocation, inconsistency = -232822 47304726 47305459 48691605 48692338 NC_060929.1 NC_000005.10 95.37 True translocation 122273206 122274104 48696077 48696976 NC_060925.1 NC_000005.10 95.89 True relocation, inconsistency = 3088913 125365123 125366206 48700164 48699082 NC_060925.1 NC_000005.10 95.02 True relocation, inconsistency = 1910537 123445676 123446506 48708244 48709075 NC_060925.1 NC_000005.10 97.84 True relocation, inconsistency = 689959 124139878 124140547 48712807 48712137 NC_060925.1 NC_000005.10 95.11 True translocation 49418621 49420083 48712808 48714272 NC_060929.1 NC_000005.10 96.11 True local misassembly 49420855 49422043 48715043 48716230 NC_060929.1 NC_000005.10 95.71 True relocation, inconsistency = -2177127 47247475 47248349 48718789 48719664 NC_060929.1 NC_000005.10 96.69 True translocation 123748685 123751626 48722992 48725934 NC_060925.1 NC_000005.10 95.01 True translocation 29661509 29662826 48741378 48742694 NC_060943.1 NC_000005.10 96.21 True local misassembly 29663167 29664162 48742695 48743692 NC_060943.1 NC_000005.10 96.79 True translocation 48294496 48295174 48752940 48753618 NC_060929.1 NC_000005.10 96.76 True translocation 125976056 125978036 48785734 48787717 NC_060925.1 NC_000005.10 95.51 True local misassembly 125978372 125979711 48787718 48789061 NC_060925.1 NC_000005.10 96.58 True translocation 48160671 48162600 48790010 48791936 NC_060929.1 NC_000005.10 95.23 True translocation 124997691 124999154 48793399 48791937 NC_060925.1 NC_000005.10 96.82 True relocation, inconsistency = 1103824 123884191 123885874 48801392 48803075 NC_060925.1 NC_000005.10 95.78 True translocation 48880868 48882310 48803574 48805016 NC_060929.1 NC_000005.10 95.29 True local misassembly 48882651 48883255 48805017 48805624 NC_060929.1 NC_000005.10 96.55 True local misassembly 48883597 48884856 48805625 48806886 NC_060929.1 NC_000005.10 96.35 True local misassembly 48884907 48885620 48807616 48808329 NC_060929.1 NC_000005.10 96.64 True local misassembly 48885621 48886685 48808670 48809735 NC_060929.1 NC_000005.10 95.78 True translocation 28691417 28692009 48823843 48824434 NC_060943.1 NC_000005.10 96.63 True translocation 126292007 126293248 48835974 48837214 NC_060925.1 NC_000005.10 96.22 True local misassembly 126293249 126294388 48837556 48838698 NC_060925.1 NC_000005.10 96.24 True translocation 48727998 48729334 48847420 48848750 NC_060929.1 NC_000005.10 96.19 True translocation 123485800 123487378 48859513 48861091 NC_060925.1 NC_000005.10 95.25 True translocation 29249915 29251493 48862569 48864153 NC_060943.1 NC_000005.10 95.65 True translocation 49456691 49458194 48864770 48866273 NC_060929.1 NC_000005.10 96.21 True translocation 123777614 123778290 48878704 48879380 NC_060925.1 NC_000005.10 98.82 True local misassembly 123778631 123779714 48879381 48880462 NC_060925.1 NC_000005.10 96.59 True relocation, inconsistency = 206988 123987200 123988720 48880960 48882481 NC_060925.1 NC_000005.10 95.99 True translocation 49349085 49350372 48915101 48916388 NC_060929.1 NC_000005.10 96.2 True relocation, inconsistency = -2235211 47128060 47129092 48929287 48930321 NC_060929.1 NC_000005.10 95.83 True relocation, inconsistency = 1634579 48763672 48769130 48930322 48935785 NC_060929.1 NC_000005.10 95.03 True relocation, inconsistency = 575840 49362260 49363650 48953075 48954465 NC_060929.1 NC_000005.10 95.4 True relocation, inconsistency = -2209407 47157436 47158901 48957658 48959124 NC_060929.1 NC_000005.10 95.09 True translocation 122125804 122126855 48971587 48972633 NC_060925.1 NC_000005.10 95.34 True local misassembly 122126856 122128479 48972974 48974595 NC_060925.1 NC_000005.10 96.18 True translocation 47859598 47860324 48976107 48976833 NC_060929.1 NC_000005.10 96.15 True local misassembly 47866966 47867785 48983141 48983959 NC_060929.1 NC_000005.10 96.59 True relocation, inconsistency = 1500931 49369059 49373617 48984302 48988858 NC_060929.1 NC_000005.10 95.24 True local misassembly 49373957 49374955 48988859 48989858 NC_060929.1 NC_000005.10 95.3 True translocation 125886960 125889095 48991514 48993652 NC_060925.1 NC_000005.10 95.14 True translocation 47268373 47269676 49000626 49001930 NC_060929.1 NC_000005.10 95.56 True local misassembly 47270017 47271423 49001931 49003341 NC_060929.1 NC_000005.10 95.82 True relocation, inconsistency = -13256 47265640 47266319 49010814 49011493 NC_060929.1 NC_000005.10 96.47 True local misassembly 47266320 47269208 49011834 49014722 NC_060929.1 NC_000005.10 95.4 True local misassembly 47269548 47271482 49014723 49016658 NC_060929.1 NC_000005.10 95.4 True translocation 25966486 25968629 49022255 49024399 NC_060943.1 NC_000005.10 95.11 True translocation 125978864 125982122 49027395 49030653 NC_060925.1 NC_000005.10 95.4 True relocation, inconsistency = -2631334 123360353 123362006 49040218 49041872 NC_060925.1 NC_000005.10 96.32 True translocation 47371981 47372694 49043414 49044127 NC_060929.1 NC_000005.10 95.94 True local misassembly 47372695 47373542 49044467 49045314 NC_060929.1 NC_000005.10 97.64 True relocation, inconsistency = 1808499 49193589 49195448 49056862 49058717 NC_060929.1 NC_000005.10 95.59 True translocation 123652504 123653183 49062977 49063656 NC_060925.1 NC_000005.10 97.5 True translocation 49188678 49190060 49063657 49065039 NC_060929.1 NC_000005.10 95.3 True translocation 126188112 126189609 49070656 49072150 NC_060925.1 NC_000005.10 96.73 True translocation 25961048 25963670 49073727 49076352 NC_060943.1 NC_000005.10 95.09 True translocation 49522958 49523631 49078960 49079633 NC_060929.1 NC_000005.10 98.52 True relocation, inconsistency = -1373168 48150801 48152410 49079971 49081577 NC_060929.1 NC_000005.10 95.47 True local misassembly 48152411 48153173 49081919 49082681 NC_060929.1 NC_000005.10 97.77 True local misassembly 48154197 48155373 49083027 49084205 NC_060929.1 NC_000005.10 96.27 True translocation 25937881 25938397 49087959 49088474 NC_060943.1 NC_000005.10 99.23 True translocation 47816772 47817832 49097262 49098324 NC_060929.1 NC_000005.10 97.18 True translocation 124054813 124055461 49102268 49102915 NC_060925.1 NC_000005.10 98.61 True local misassembly 124055462 124057175 49103256 49104968 NC_060925.1 NC_000005.10 95.27 True translocation 47773667 47774750 49126549 49127636 NC_060929.1 NC_000005.10 96.51 True relocation, inconsistency = 1759820 49535260 49537368 49128326 49130436 NC_060929.1 NC_000005.10 95.17 True translocation 122665029 122668526 49131953 49135450 NC_060925.1 NC_000005.10 95.06 True relocation, inconsistency = -499997 122168530 122169459 49135451 49136382 NC_060925.1 NC_000005.10 96.14 True translocation 29633718 29634716 49139542 49140542 NC_060943.1 NC_000005.10 95.0 True translocation 49436653 49438058 49142194 49143598 NC_060929.1 NC_000005.10 95.38 True local misassembly 49438399 49439748 49143599 49144948 NC_060929.1 NC_000005.10 95.93 True relocation, inconsistency = -1599794 47849438 47851137 49154432 49156132 NC_060929.1 NC_000005.10 95.94 True translocation 123415770 123417673 49157669 49159574 NC_060925.1 NC_000005.10 96.27 True local misassembly 123418014 123419252 49159575 49160813 NC_060925.1 NC_000005.10 95.87 True local misassembly 123415855 123417463 49160814 49162424 NC_060925.1 NC_000005.10 96.46 True translocation 49484541 49485166 49185363 49185988 NC_060929.1 NC_000005.10 98.24 True translocation 29662838 29665370 49187041 49189573 NC_060943.1 NC_000005.10 95.03 True translocation 122526924 122528043 49191860 49192977 NC_060925.1 NC_000005.10 95.09 True local misassembly 122528385 122529671 49192978 49194264 NC_060925.1 NC_000005.10 97.44 True local misassembly 122530011 122531161 49194265 49195415 NC_060925.1 NC_000005.10 97.07 True relocation, inconsistency = -509623 122021539 122025025 49195416 49198905 NC_060925.1 NC_000005.10 96.02 True relocation, inconsistency = 1500811 123528411 123529531 49201480 49202599 NC_060925.1 NC_000005.10 95.63 True translocation 29720349 29721419 49202600 49203669 NC_060943.1 NC_000005.10 96.4 True translocation 47306766 47308449 49208316 49209999 NC_060929.1 NC_000005.10 95.96 True local misassembly 47308450 47309851 49210340 49211743 NC_060929.1 NC_000005.10 96.3 True local misassembly 47311184 47312769 49212395 49213985 NC_060929.1 NC_000005.10 95.73 True translocation 25910578 25911543 49215848 49216813 NC_060943.1 NC_000005.10 96.79 True local misassembly 25911885 25913027 49216814 49217957 NC_060943.1 NC_000005.10 95.63 True translocation 49394866 49395546 49221573 49222254 NC_060929.1 NC_000005.10 95.16 True local misassembly 49395547 49396954 49222595 49223998 NC_060929.1 NC_000005.10 95.6 True translocation 29671672 29673017 49224594 49225939 NC_060943.1 NC_000005.10 96.88 True translocation 123735768 123738304 49247029 49249568 NC_060925.1 NC_000005.10 95.94 True translocation 47968011 47969027 49262363 49263380 NC_060929.1 NC_000005.10 95.87 True relocation, inconsistency = -449498 47519531 47520210 49263382 49264062 NC_060929.1 NC_000005.10 95.45 True local misassembly 47520211 47521172 49264402 49265362 NC_060929.1 NC_000005.10 95.84 True local misassembly 47521513 47522281 49265363 49266131 NC_060929.1 NC_000005.10 96.23 True relocation, inconsistency = 1794148 49316743 49319455 49266445 49269159 NC_060929.1 NC_000005.10 95.29 True translocation 28411713 28413190 49271826 49273304 NC_060943.1 NC_000005.10 95.81 True translocation 49540282 49541704 49285814 49287237 NC_060929.1 NC_000005.10 95.51 True relocation, inconsistency = -106688 49436653 49438058 49288874 49290280 NC_060929.1 NC_000005.10 96.02 True local misassembly 49438399 49439368 49290281 49291251 NC_060929.1 NC_000005.10 95.98 True local misassembly 49442879 49443444 49295101 49295668 NC_060929.1 NC_000005.10 97.54 True local misassembly 49443445 49444150 49296008 49296712 NC_060929.1 NC_000005.10 97.03 True local misassembly 49444489 49445772 49296713 49297996 NC_060929.1 NC_000005.10 96.34 True translocation 29657735 29659179 49298013 49299457 NC_060943.1 NC_000005.10 95.16 True local misassembly 29659520 29661272 49299458 49301210 NC_060943.1 NC_000005.10 95.15 True translocation 121800820 121801785 49301453 49302419 NC_060925.1 NC_000005.10 95.55 True relocation, inconsistency = 4458463 126261687 126263254 49303858 49305430 NC_060925.1 NC_000005.10 95.61 True relocation, inconsistency = 1817292 124443473 124444394 49306346 49305431 NC_060925.1 NC_000005.10 95.68 True local misassembly 124436418 124437874 49309661 49308204 NC_060925.1 NC_000005.10 97.19 True local misassembly 124435061 124436077 49310679 49309662 NC_060925.1 NC_000005.10 95.68 True translocation 49253884 49255423 49311298 49312837 NC_060929.1 NC_000005.10 96.95 True fake: not a misassembly (possible transposable element) 49576952 49577728 49313643 49314419 NC_060929.1 NC_000005.10 95.37 True fake: not a misassembly (possible transposable element) 49259326 49260166 49316743 49317583 NC_060929.1 NC_000005.10 96.43 True relocation, inconsistency = 320725 49585148 49586905 49321840 49323598 NC_060929.1 NC_000005.10 95.96 True relocation, inconsistency = -1447250 48140952 48142710 49324895 49326656 NC_060929.1 NC_000005.10 96.2 True relocation, inconsistency = 986582 49132624 49136016 49329988 49333380 NC_060929.1 NC_000005.10 95.7 True relocation, inconsistency = -444383 48723558 48724430 49365305 49366178 NC_060929.1 NC_000005.10 95.65 True local misassembly 48724768 48725386 49366179 49366798 NC_060929.1 NC_000005.10 98.23 True translocation 122033905 122035155 49397770 49399022 NC_060925.1 NC_000005.10 95.53 True local misassembly 122047009 122049286 49411139 49413416 NC_060925.1 NC_000005.10 96.27 True translocation 29633647 29634760 49427531 49428645 NC_060943.1 NC_000005.10 95.96 True translocation 49502222 49503239 49434329 49435346 NC_060929.1 NC_000005.10 96.37 True relocation, inconsistency = -93443 49422723 49424461 49448273 49450011 NC_060929.1 NC_000005.10 95.46 True translocation 26166526 26167959 49452313 49453748 NC_060943.1 NC_000005.10 95.75 True translocation 49214223 49215873 49458554 49460206 NC_060929.1 NC_000005.10 95.95 True relocation, inconsistency = -1881200 47336024 47336672 49461557 49462206 NC_060929.1 NC_000005.10 96.92 True local misassembly 47336673 47337690 49462547 49463565 NC_060929.1 NC_000005.10 95.98 True local misassembly 47338031 47338875 49463566 49464410 NC_060929.1 NC_000005.10 97.63 True local misassembly 47338876 47340268 49464750 49466139 NC_060929.1 NC_000005.10 95.41 True translocation 123430720 123431737 49471557 49472574 NC_060925.1 NC_000005.10 96.27 True local misassembly 123432078 123432637 49472575 49473134 NC_060925.1 NC_000005.10 97.14 True translocation 25971318 25972244 49486636 49487563 NC_060943.1 NC_000005.10 95.26 True translocation 125396584 125399174 49490615 49488029 NC_060925.1 NC_000005.10 96.1 True relocation, inconsistency = 3186860 122179123 122180905 49519434 49521215 NC_060925.1 NC_000005.10 95.34 True local misassembly 122180906 122182688 49521556 49523336 NC_060925.1 NC_000005.10 95.34 True relocation, inconsistency = 10544 122195449 122197145 49525553 49527252 NC_060925.1 NC_000005.10 95.47 True relocation, inconsistency = 1236588 123436356 123437830 49529875 49531351 NC_060925.1 NC_000005.10 95.19 True translocation 47324439 47325182 49533930 49534673 NC_060929.1 NC_000005.10 96.77 True translocation 29662202 29663036 49558067 49558901 NC_060943.1 NC_000005.10 97.01 True local misassembly 29663377 29665226 49558902 49560751 NC_060943.1 NC_000005.10 95.89 True translocation 49592596 49593317 49560752 49561473 NC_060929.1 NC_000005.10 96.47 True relocation, inconsistency = -281658 49321673 49322536 49571487 49572350 NC_060929.1 NC_000005.10 95.95 True local misassembly 49322537 49323996 49572690 49574150 NC_060929.1 NC_000005.10 95.55 True translocation 124043612 124044276 49576623 49577286 NC_060925.1 NC_000005.10 96.24 True local misassembly 124044277 124045279 49577627 49578628 NC_060925.1 NC_000005.10 96.01 True local misassembly 124045619 124049124 49578629 49582130 NC_060925.1 NC_000005.10 95.27 True translocation 29656034 29657832 49585881 49587682 NC_060943.1 NC_000005.10 95.67 True translocation 47223505 47224017 49588635 49589147 NC_060929.1 NC_000005.10 97.08 True translocation 124406562 124408100 49591369 49589829 NC_060925.1 NC_000005.10 96.37 True translocation, scaffold gap is present 49596606 49598245 49599348 49600986 NC_060929.1 NC_000005.10 99.82 True relocation, scaffold gap is present, inconsistency = 15199 49614352 49615269 49602821 49601894 NC_060929.1 NC_000005.10 96.34 True relocation, scaffold gap is present, inconsistency = 10820 49595154 49596638 49611199 49609715 NC_060929.1 NC_000005.10 97.24 True fake: scaffold gap size wrong estimation (local) 49592132 49595946 49615976 49612160 NC_060929.1 NC_000005.10 95.6 True local misassembly 49593184 49594849 49617643 49615977 NC_060929.1 NC_000005.10 95.69 True fake: scaffold gap size wrong estimation (extensive) 49590456 49592568 49628165 49626053 NC_060929.1 NC_000005.10 95.13 True relocation, scaffold gap is present, inconsistency = 1214969 48371705 48372886 49631949 49630766 NC_060929.1 NC_000005.10 96.79 True relocation, scaffold gap is present, inconsistency = 1205189 49593061 49596700 49646935 49650573 NC_060929.1 NC_000005.10 99.86 True fake: scaffold gap size wrong estimation (local) 49602483 49608086 49656262 49661871 NC_060929.1 NC_000005.10 99.52 True translocation, scaffold gap is present 24593667 24606229 49667535 49680109 NC_060943.1 NC_000005.10 96.75 True indel: indel (> 5bp) 24606401 24609390 49680110 49683102 NC_060943.1 NC_000005.10 97.33 True indel: indel (> 5bp) 24609561 24612420 49683103 49685962 NC_060943.1 NC_000005.10 97.38 True local misassembly 24612763 24615645 49685963 49688844 NC_060943.1 NC_000005.10 96.64 True indel: indel (> 5bp) 24615816 24621594 49688845 49694627 NC_060943.1 NC_000005.10 97.7 True indel: indel (> 5bp) 24621766 24624474 49694628 49697334 NC_060943.1 NC_000005.10 96.57 True indel: indel (> 5bp) 24624646 24630622 49697335 49703314 NC_060943.1 NC_000005.10 96.96 True indel: indel (<= 5bp) 24630786 24648497 49703481 49721203 NC_060943.1 NC_000005.10 97.43 True fake: scaffold gap size wrong estimation (local) 24653603 24677795 49725390 49749590 NC_060943.1 NC_000005.10 95.83 True local misassembly 24683961 24689404 49755022 49760467 NC_060943.1 NC_000005.10 95.98 True local misassembly 24691808 24694035 49762670 49764900 NC_060943.1 NC_000005.10 95.83 True local misassembly 24696440 24707875 49767104 49778547 NC_060943.1 NC_000005.10 95.65 True local misassembly 24707876 24709590 49779059 49780775 NC_060943.1 NC_000005.10 96.27 True local misassembly 24709591 24713487 49781287 49785184 NC_060943.1 NC_000005.10 95.56 True local misassembly 24713488 24728482 49785697 49800702 NC_060943.1 NC_000005.10 96.13 True local misassembly 24728483 24746482 49801215 49819224 NC_060943.1 NC_000005.10 95.6 True indel: indel (> 5bp) 24746483 24750477 49819396 49823397 NC_060943.1 NC_000005.10 95.88 True local misassembly 24750478 24755536 49823740 49828801 NC_060943.1 NC_000005.10 96.19 True indel: stretch of mismatches 24755723 24986364 49828988 50059637 NC_060943.1 NC_000005.10 96.19 True translocation, scaffold gap is present 50929066 51464373 50110112 50645244 NC_060929.1 NC_000005.10 98.79 True indel: indel (> 5bp) 51464908 65290890 50645691 64470882 NC_060929.1 NC_000005.10 99.59 True local misassembly 65297190 70560479 64477135 69757805 NC_060929.1 NC_000005.10 99.26 True relocation, inconsistency = 529877 71090513 71461873 69757962 70129696 NC_060929.1 NC_000005.10 98.82 True relocation, inconsistency = 124844 71586718 71614316 70129697 70157278 NC_060929.1 NC_000005.10 99.67 True indel: indel (> 5bp) 71614342 71629773 70157279 70172679 NC_060929.1 NC_000005.10 99.39 True indel: indel (> 5bp) 71629796 71672760 70172680 70215652 NC_060929.1 NC_000005.10 99.66 True local misassembly 71676010 71694061 70215653 70233702 NC_060929.1 NC_000005.10 99.53 True relocation, inconsistency = 971640 70527985 70704369 70409767 70233703 NC_060929.1 NC_000005.10 99.45 True relocation, inconsistency = 114813 70380402 70413171 70409768 70442547 NC_060929.1 NC_000005.10 99.6 True indel: indel (> 5bp) 70413172 70425840 70442580 70455229 NC_060929.1 NC_000005.10 99.64 True indel: indel (> 5bp) 70425863 70451149 70455230 70480520 NC_060929.1 NC_000005.10 99.79 True local misassembly 70451485 70460029 70481339 70489890 NC_060929.1 NC_000005.10 99.37 True relocation, inconsistency = -20471 70460030 70465910 70510362 70516240 NC_060929.1 NC_000005.10 99.52 True relocation, inconsistency = 624614 71098423 71248134 70664331 70516241 NC_060929.1 NC_000005.10 96.84 True relocation, inconsistency = -126121 71122014 101669625 70664332 101161558 NC_060929.1 NC_000005.10 99.49 True indel: indel (> 5bp) 101669939 120566244 101161693 120048160 NC_060929.1 NC_000005.10 99.63 True indel: indel (> 5bp) 120566579 139978484 120048439 139452659 NC_060929.1 NC_000005.10 99.67 True fake: scaffold gap size wrong estimation (local) 139978748 148709206 139453660 148173476 NC_060929.1 NC_000005.10 99.68 True local misassembly 148709584 176574361 148175216 176030646 NC_060929.1 NC_000005.10 99.61 True indel: indel (> 5bp) 176574747 180196349 176031040 179643384 NC_060929.1 NC_000005.10 98.87 True local misassembly 180204347 180206583 179651386 179653651 NC_060929.1 NC_000005.10 96.6 True local misassembly 180210436 182040985 179655236 181478259 NC_060929.1 NC_000005.10 98.9 True CONTIG NC_000005.10 181538259 misassembled 25229828 25306217 76408 1 NC_060943.1 NT_113948.1 99.67 True local misassembly 25225852 25228465 79022 76409 NC_060943.1 NT_113948.1 98.78 True local misassembly 25221478 25225851 84759 80385 NC_060943.1 NT_113948.1 98.56 True local misassembly 25209620 25217548 92689 84760 NC_060943.1 NT_113948.1 98.05 True CONTIG NT_113948.1 92689 correct 60448 76061 60001 75598 NC_060935.1 NC_000006.12 98.83 True translocation 75098 88165 75599 88673 NC_060925.1 NC_000006.12 99.45 True local misassembly 90084 90796 88674 89385 NC_060925.1 NC_000006.12 98.32 True local misassembly 95402 136800 89386 130776 NC_060925.1 NC_000006.12 99.41 True translocation 66107285 66124952 147964 130777 NC_060944.1 NC_000006.12 96.29 True translocation 2876 15539664 147965 15666474 NC_060930.1 NC_000006.12 99.49 True local misassembly 15539818 30906425 15667533 31041417 NC_060930.1 NC_000006.12 99.46 True local misassembly 30910141 32339743 31042319 32486765 NC_060930.1 NC_000006.12 98.24 True relocation, inconsistency = -21077 32377138 32379053 32545237 32547134 NC_060930.1 NC_000006.12 95.09 True local misassembly 32379054 32385077 32548487 32554523 NC_060930.1 NC_000006.12 95.03 True local misassembly 32426400 32427301 32596832 32597734 NC_060930.1 NC_000006.12 96.68 True local misassembly 32436047 32453967 32606730 32624630 NC_060930.1 NC_000006.12 96.62 True relocation, inconsistency = -14137 32495383 32503178 32680183 32687962 NC_060930.1 NC_000006.12 95.18 True local misassembly 32510563 34556106 32688648 34732145 NC_060930.1 NC_000006.12 99.44 True local misassembly 34556164 58293239 34733342 58453888 NC_060930.1 NC_000006.12 99.58 True relocation, scaffold gap is present, inconsistency = -85574 58307666 58415440 58553889 58661635 NC_060930.1 NC_000006.12 98.12 True relocation, inconsistency = -128728 58286713 58426084 58661636 58800143 NC_060930.1 NC_000006.12 97.41 True relocation, inconsistency = 87318 58513403 58531992 58800144 58818723 NC_060930.1 NC_000006.12 98.54 True local misassembly 58531993 58534712 58819061 58821781 NC_060930.1 NC_000006.12 98.79 True local misassembly 58534713 58537432 58822119 58824838 NC_060930.1 NC_000006.12 98.68 True local misassembly 58537433 58675155 58825176 58962825 NC_060930.1 NC_000006.12 98.74 True local misassembly 58677262 58680091 58962890 58965719 NC_060930.1 NC_000006.12 98.18 True relocation, inconsistency = -142659 58537433 58675190 58965720 59103447 NC_060930.1 NC_000006.12 98.76 True local misassembly 58677374 58681817 59103585 59108027 NC_060930.1 NC_000006.12 98.58 True local misassembly 58684370 58685907 59108028 59109566 NC_060930.1 NC_000006.12 98.31 True relocation, inconsistency = -135530 58550378 58675190 59109567 59234331 NC_060930.1 NC_000006.12 98.78 True relocation, inconsistency = -94758 58580433 58614235 59234332 59268144 NC_060930.1 NC_000006.12 98.86 True local misassembly 58615248 58638782 59268309 59291850 NC_060930.1 NC_000006.12 98.8 True local misassembly 58638783 58659898 59292488 59313578 NC_060930.1 NC_000006.12 98.66 True local misassembly 58660405 58675190 59313579 59328365 NC_060930.1 NC_000006.12 98.6 True local misassembly 58677374 58681657 59328503 59332787 NC_060930.1 NC_000006.12 98.6 True local misassembly 58684380 58716608 59332788 59364985 NC_060930.1 NC_000006.12 98.52 True relocation, inconsistency = -33627 58682982 58731743 59364986 59413755 NC_060930.1 NC_000006.12 98.64 True local misassembly 58733927 58742588 59413893 59422561 NC_060930.1 NC_000006.12 98.49 True local misassembly 58742589 58744352 59423068 59424832 NC_060930.1 NC_000006.12 98.49 True relocation, inconsistency = 31597 58775950 58789099 59424833 59437981 NC_060930.1 NC_000006.12 98.65 True relocation, inconsistency = -33118 58755982 58757413 59437982 59439414 NC_060930.1 NC_000006.12 98.66 True relocation, scaffold gap is present, inconsistency = -151520 58606259 58659085 59439780 59492623 NC_060930.1 NC_000006.12 98.75 True indel: indel (> 5bp) 58659086 58675167 59492793 59508876 NC_060930.1 NC_000006.12 98.33 True local misassembly 58677374 58681285 59509041 59512953 NC_060930.1 NC_000006.12 98.59 True local misassembly 58683837 58692462 59512954 59521582 NC_060930.1 NC_000006.12 98.64 True local misassembly 58692463 58720894 59522275 59550721 NC_060930.1 NC_000006.12 98.55 True relocation, inconsistency = -123806 58597262 58622628 59550895 59576251 NC_060930.1 NC_000006.12 98.64 True local misassembly 58623475 58675190 59576252 59627945 NC_060930.1 NC_000006.12 98.56 True local misassembly 58677374 58683010 59628083 59633722 NC_060930.1 NC_000006.12 98.39 True local misassembly 58683011 58722745 59634229 59673933 NC_060930.1 NC_000006.12 98.5 True relocation, inconsistency = 93241 58815987 58879662 59673934 59737616 NC_060930.1 NC_000006.12 98.7 True relocation, inconsistency = 182303 59061966 59064205 59737617 59739857 NC_060930.1 NC_000006.12 98.83 True relocation, inconsistency = -279086 58785120 58862859 59739858 59818634 NC_060930.1 NC_000006.12 97.35 True fake: scaffold gap size wrong estimation (local) 58863040 58873894 59819076 59829930 NC_060930.1 NC_000006.12 98.87 True relocation, scaffold gap is present, inconsistency = 2127778 61401677 62491318 60229935 61322597 NC_060930.1 NC_000006.12 99.36 True relocation, scaffold gap is present, inconsistency = -22902 62508906 62516373 61363087 61370554 NC_060930.1 NC_000006.12 99.81 True fake: scaffold gap size wrong estimation (local) 62517209 74740513 61371373 73563464 NC_060930.1 NC_000006.12 99.16 True indel: indel (<= 5bp) 74740883 81829354 73563831 80621020 NC_060930.1 NC_000006.12 99.31 True indel: indel (> 5bp) 81829762 90156101 80621416 88947693 NC_060930.1 NC_000006.12 99.46 True indel: indel (> 5bp) 90156622 90422576 88948064 89213915 NC_060930.1 NC_000006.12 99.73 True local misassembly 90423503 95243301 89214233 94031356 NC_060930.1 NC_000006.12 99.76 True local misassembly 95247205 96236181 94031695 95020589 NC_060930.1 NC_000006.12 99.67 True relocation, scaffold gap is present, inconsistency = -46655 96239743 96671184 95070806 95502131 NC_060930.1 NC_000006.12 99.67 True local misassembly 96673439 107897410 95502788 106721331 NC_060930.1 NC_000006.12 99.73 True fake: not a misassembly (possible transposable element) 107897411 107899084 106723005 106721332 NC_060930.1 NC_000006.12 100.0 True fake: not a misassembly (possible transposable element) 107899085 158517888 106723006 157311931 NC_060930.1 NC_000006.12 99.69 True local misassembly 158518993 160898275 157312668 159652291 NC_060930.1 NC_000006.12 97.91 True local misassembly 160899118 163373444 159653256 162010666 NC_060930.1 NC_000006.12 95.0 True local misassembly 163374817 168977339 162011507 167591393 NC_060930.1 NC_000006.12 99.22 True relocation, scaffold gap is present, inconsistency = -49413 168977927 171421929 167641394 170065217 NC_060930.1 NC_000006.12 98.27 True local misassembly 171423393 171425232 170066405 170068244 NC_060930.1 NC_000006.12 99.62 True indel: indel (> 5bp) 171425293 171435650 170068245 170078608 NC_060930.1 NC_000006.12 99.77 True indel: indel (> 5bp) 171435682 171436605 170078609 170079547 NC_060930.1 NC_000006.12 96.7 True indel: indel (> 5bp) 171436651 171441699 170079548 170084596 NC_060930.1 NC_000006.12 99.82 True indel: indel (> 5bp) 171441700 171444449 170084641 170087390 NC_060930.1 NC_000006.12 99.71 True local misassembly 171445796 171448126 170087865 170090207 NC_060930.1 NC_000006.12 99.27 True indel: indel (> 5bp) 171448151 171452468 170090208 170094545 NC_060930.1 NC_000006.12 99.31 True indel: indel (> 5bp) 171452623 171453255 170094546 170095178 NC_060930.1 NC_000006.12 99.68 True indel: indel (> 5bp) 171453327 171471937 170095179 170113797 NC_060930.1 NC_000006.12 99.75 True local misassembly 171472844 171485128 170113798 170126087 NC_060930.1 NC_000006.12 99.74 True indel: indel (> 5bp) 171485189 171498610 170126088 170139508 NC_060930.1 NC_000006.12 99.79 True indel: indel (> 5bp) 171498638 171500103 170139509 170140974 NC_060930.1 NC_000006.12 99.39 True local misassembly 171500757 171505767 170141058 170146050 NC_060930.1 NC_000006.12 99.4 True local misassembly 171508114 171511405 170146306 170149597 NC_060930.1 NC_000006.12 99.18 True local misassembly 171511893 171516143 170150270 170154517 NC_060930.1 NC_000006.12 99.53 True indel: indel (> 5bp) 171516286 171522317 170154518 170160549 NC_060930.1 NC_000006.12 99.73 True indel: indel (> 5bp) 171522350 171530742 170160550 170168928 NC_060930.1 NC_000006.12 99.45 True local misassembly 171530743 171531793 170171078 170172108 NC_060930.1 NC_000006.12 96.67 True local misassembly 171531794 171536768 170172350 170177330 NC_060930.1 NC_000006.12 99.58 True indel: indel (> 5bp) 171536961 171543260 170177331 170183630 NC_060930.1 NC_000006.12 99.92 True local misassembly 171545473 171547112 170183899 170185528 NC_060930.1 NC_000006.12 99.27 True local misassembly 171547452 171552419 170185529 170190496 NC_060930.1 NC_000006.12 99.76 True local misassembly 171553214 171575952 170191785 170214521 NC_060930.1 NC_000006.12 99.79 True local misassembly 171576106 171577788 170215827 170217511 NC_060930.1 NC_000006.12 99.58 True local misassembly 171578089 171578826 170218222 170218956 NC_060930.1 NC_000006.12 95.53 True indel: indel (> 5bp) 171578827 171579726 170219008 170219907 NC_060930.1 NC_000006.12 98.11 True local misassembly 171580356 171596428 170220802 170236876 NC_060930.1 NC_000006.12 99.88 True local misassembly 171596812 171605186 170237962 170246314 NC_060930.1 NC_000006.12 99.57 True local misassembly 171606289 171615026 170247076 170255815 NC_060930.1 NC_000006.12 99.69 True indel: indel (> 5bp) 171615058 171624146 170255816 170264916 NC_060930.1 NC_000006.12 99.63 True indel: indel (> 5bp) 171624147 171625800 170265113 170266765 NC_060930.1 NC_000006.12 99.7 True local misassembly 171626132 171753321 170267437 170394630 NC_060930.1 NC_000006.12 99.93 True indel: indel (> 5bp) 171753474 171757395 170394631 170398553 NC_060930.1 NC_000006.12 99.72 True local misassembly 171763102 171763683 170398902 170399483 NC_060930.1 NC_000006.12 100.0 True local misassembly 171770984 171792581 170399987 170421577 NC_060930.1 NC_000006.12 99.56 True local misassembly 171792986 171801636 170421578 170430228 NC_060930.1 NC_000006.12 99.49 True indel: indel (> 5bp) 171801662 171806825 170430229 170435392 NC_060930.1 NC_000006.12 99.83 True indel: indel (> 5bp) 171806826 171815570 170435476 170444220 NC_060930.1 NC_000006.12 99.81 True indel: indel (> 5bp) 171815571 171821309 170444259 170449995 NC_060930.1 NC_000006.12 99.62 True local misassembly 171821856 171830966 170449996 170459093 NC_060930.1 NC_000006.12 99.67 True indel: indel (> 5bp) 171830967 171834817 170459271 170463121 NC_060930.1 NC_000006.12 100.0 True indel: indel (> 5bp) 171834818 171837933 170463152 170466263 NC_060930.1 NC_000006.12 99.65 True local misassembly 171838685 171839222 170466593 170467134 NC_060930.1 NC_000006.12 99.26 True indel: indel (> 5bp) 171839343 171847120 170467135 170474912 NC_060930.1 NC_000006.12 99.99 True indel: indel (> 5bp) 171847160 171865500 170474913 170493253 NC_060930.1 NC_000006.12 99.98 True indel: indel (> 5bp) 171865501 171867767 170493300 170495566 NC_060930.1 NC_000006.12 100.0 True local misassembly 171868048 171868564 170495567 170496083 NC_060930.1 NC_000006.12 99.81 True local misassembly 171869642 172030489 170496084 170656932 NC_060930.1 NC_000006.12 99.87 True local misassembly 172030490 172031091 170657838 170658439 NC_060930.1 NC_000006.12 98.01 True local misassembly 172031092 172032015 170659364 170660286 NC_060930.1 NC_000006.12 98.7 True local misassembly 172032350 172082762 170661774 170712220 NC_060930.1 NC_000006.12 99.6 True local misassembly 172088282 172088948 170712221 170712887 NC_060930.1 NC_000006.12 99.25 True indel: indel (> 5bp) 172089017 172097923 170712888 170721766 NC_060930.1 NC_000006.12 99.01 True indel: indel (> 5bp) 172098055 172100572 170721767 170724274 NC_060930.1 NC_000006.12 98.93 True indel: indel (> 5bp) 172100620 172101127 170724275 170724782 NC_060930.1 NC_000006.12 100.0 True indel: indel (> 5bp) 172101269 172107407 170724783 170730922 NC_060930.1 NC_000006.12 99.3 True local misassembly 172107408 172119294 170731248 170743139 NC_060930.1 NC_000006.12 98.52 True translocation 134741745 134743038 170743140 170744433 NC_060934.1 NC_000006.12 95.81 True local misassembly 134744788 134746343 170744434 170745979 NC_060934.1 NC_000006.12 98.84 True CONTIG NC_000006.12 170805979 misassembled 107742 337699 10239 237846 NC_060931.1 NC_000007.14 96.1 True fake: scaffold gap size wrong estimation (local) 339627 582198 240253 483228 NC_060931.1 NC_000007.14 97.47 True local misassembly 582720 668366 483416 566662 NC_060931.1 NC_000007.14 96.69 True local misassembly 669073 1383420 567341 1273098 NC_060931.1 NC_000007.14 96.67 True local misassembly 1385255 13502077 1273606 13370632 NC_060931.1 NC_000007.14 99.44 True local misassembly 13502926 45071442 13370794 44911039 NC_060931.1 NC_000007.14 99.62 True indel: indel (<= 5bp) 45071556 58363257 44911149 58119653 NC_060931.1 NC_000007.14 98.9 True relocation, scaffold gap is present, inconsistency = 2073194 60488336 60492113 58171538 58175313 NC_060931.1 NC_000007.14 96.0 True local misassembly 60492114 60493543 58175656 58177087 NC_060931.1 NC_000007.14 95.3 True relocation, inconsistency = 692481 61186025 61195667 58177088 58186732 NC_060931.1 NC_000007.14 97.41 True relocation, inconsistency = 21117 61216785 61218436 58186733 58188381 NC_060931.1 NC_000007.14 97.07 True relocation, inconsistency = -211848 61006766 61008461 58188559 58190246 NC_060931.1 NC_000007.14 96.47 True relocation, inconsistency = -140308 60868154 60877737 58190247 58199831 NC_060931.1 NC_000007.14 98.08 True local misassembly 60878078 60879628 58199832 58201382 NC_060931.1 NC_000007.14 98.32 True local misassembly 60879969 60880529 58201383 58201943 NC_060931.1 NC_000007.14 98.1 True relocation, inconsistency = 1317762 62198292 62208778 58201944 58212089 NC_060931.1 NC_000007.14 96.66 True relocation, inconsistency = -1335135 60873644 60931749 58212090 58269880 NC_060931.1 NC_000007.14 98.24 True relocation, inconsistency = 139631 61071381 61074023 58269881 58272522 NC_060931.1 NC_000007.14 98.66 True relocation, scaffold gap is present, inconsistency = -469682 60604582 60635790 58272763 58304991 NC_060931.1 NC_000007.14 95.71 True relocation, inconsistency = -16352 60619439 60624377 58304992 58309594 NC_060931.1 NC_000007.14 97.29 True relocation, inconsistency = -14308 60610070 60624668 58309595 58323853 NC_060931.1 NC_000007.14 95.74 True relocation, inconsistency = 2152130 62776799 62799758 58323854 58347158 NC_060931.1 NC_000007.14 97.67 True relocation, inconsistency = -2189602 60610157 60618558 58347159 58355221 NC_060931.1 NC_000007.14 95.49 True relocation, scaffold gap is present, inconsistency = 416223 61035824 61052261 58356264 58372352 NC_060931.1 NC_000007.14 96.89 True relocation, inconsistency = -130094 60922168 60923707 58372353 58373892 NC_060931.1 NC_000007.14 98.91 True local misassembly 60924048 60924878 58373893 58374723 NC_060931.1 NC_000007.14 98.44 True local misassembly 60925221 60927187 58374724 58376690 NC_060931.1 NC_000007.14 98.74 True relocation, inconsistency = 336846 61264034 61272385 58376691 58385040 NC_060931.1 NC_000007.14 98.99 True local misassembly 61273408 61284737 58385041 58396373 NC_060931.1 NC_000007.14 98.95 True relocation, inconsistency = -779002 60505736 60510793 58396374 58401431 NC_060931.1 NC_000007.14 98.85 True local misassembly 60511134 60521376 58401432 58411675 NC_060931.1 NC_000007.14 98.75 True local misassembly 60521377 60522710 58412016 58413350 NC_060931.1 NC_000007.14 98.65 True relocation, inconsistency = 606996 61129840 61131437 58413484 58415081 NC_060931.1 NC_000007.14 99.12 True local misassembly 61131780 61135866 58415082 58419169 NC_060931.1 NC_000007.14 98.9 True local misassembly 61136209 61143041 58419170 58426012 NC_060931.1 NC_000007.14 98.63 True relocation, inconsistency = -103888 61039154 61040801 58426013 58427661 NC_060931.1 NC_000007.14 98.57 True local misassembly 61041484 61050893 58427662 58437072 NC_060931.1 NC_000007.14 98.95 True local misassembly 61050894 61051493 58437413 58438012 NC_060931.1 NC_000007.14 98.91 True relocation, inconsistency = 193808 61245302 61264599 58438013 58457312 NC_060931.1 NC_000007.14 98.75 True relocation, inconsistency = -289840 60974760 60980539 58457313 58463091 NC_060931.1 NC_000007.14 99.02 True relocation, inconsistency = 2019382 62999922 63026083 58463092 58488238 NC_060931.1 NC_000007.14 95.15 True relocation, inconsistency = -1817083 61209063 61218428 58488301 58497664 NC_060931.1 NC_000007.14 98.72 True local misassembly 61218769 61224400 58497665 58503296 NC_060931.1 NC_000007.14 98.81 True relocation, inconsistency = -274517 60950006 60968386 58503419 58521803 NC_060931.1 NC_000007.14 98.56 True relocation, inconsistency = -354500 60613887 60635699 58521804 58543614 NC_060931.1 NC_000007.14 95.57 True relocation, inconsistency = 656946 61292669 61296127 58543638 58547095 NC_060931.1 NC_000007.14 98.87 True local misassembly 61296470 61306332 58547096 58556961 NC_060931.1 NC_000007.14 98.45 True local misassembly 61306333 61308388 58557302 58559357 NC_060931.1 NC_000007.14 98.98 True local misassembly 61308731 61311173 58559358 58561800 NC_060931.1 NC_000007.14 98.24 True relocation, inconsistency = -391003 60920251 60959637 58561881 58601287 NC_060931.1 NC_000007.14 98.85 True relocation, inconsistency = 2278983 63238621 63254958 58601288 58617303 NC_060931.1 NC_000007.14 97.85 True relocation, inconsistency = -2620173 60634786 60636790 58617304 58619308 NC_060931.1 NC_000007.14 99.06 True local misassembly 60637132 60637655 58619309 58619832 NC_060931.1 NC_000007.14 98.85 True relocation, inconsistency = 636848 61274504 61287525 58619833 58632513 NC_060931.1 NC_000007.14 96.12 True relocation, inconsistency = -684881 60602645 60644706 58632514 58675257 NC_060931.1 NC_000007.14 95.72 True relocation, inconsistency = -45989 60598718 60608658 58675258 58685205 NC_060931.1 NC_000007.14 99.06 True local misassembly 60608659 60614458 58685546 58691345 NC_060931.1 NC_000007.14 98.55 True local misassembly 60615479 60618032 58691346 58693898 NC_060931.1 NC_000007.14 99.02 True local misassembly 60618033 60623142 58694239 58699347 NC_060931.1 NC_000007.14 99.02 True local misassembly 60623143 60638108 58699688 58714657 NC_060931.1 NC_000007.14 99.02 True local misassembly 60638109 60644592 58715681 58722164 NC_060931.1 NC_000007.14 98.75 True relocation, inconsistency = 964913 61609681 61633761 58722340 58747108 NC_060931.1 NC_000007.14 96.22 True relocation, inconsistency = -704758 60929004 60938305 58747109 58756417 NC_060931.1 NC_000007.14 98.86 True fake: scaffold gap size wrong estimation (local) 60938477 60962718 58756684 58780246 NC_060931.1 NC_000007.14 95.76 True relocation, inconsistency = -42914 60919805 60928810 58780247 58789261 NC_060931.1 NC_000007.14 98.87 True relocation, inconsistency = -106256 60822555 60843184 58789262 58809556 NC_060931.1 NC_000007.14 97.01 True relocation, inconsistency = -147759 60695426 60699494 58809557 58813626 NC_060931.1 NC_000007.14 98.85 True local misassembly 60699837 60702365 58813627 58816155 NC_060931.1 NC_000007.14 98.77 True relocation, inconsistency = 128343 60830709 60832253 58816156 58817700 NC_060931.1 NC_000007.14 98.51 True local misassembly 60832594 60836639 58817701 58821747 NC_060931.1 NC_000007.14 98.96 True relocation, inconsistency = 832131 61668945 61690055 58821922 58843034 NC_060931.1 NC_000007.14 98.54 True relocation, inconsistency = -867220 60822836 60849489 58843035 58869355 NC_060931.1 NC_000007.14 97.5 True relocation, inconsistency = -211120 60638370 60641468 58869356 58872454 NC_060931.1 NC_000007.14 98.78 True relocation, inconsistency = 276842 60918311 60929831 58872455 58884318 NC_060931.1 NC_000007.14 97.07 True relocation, inconsistency = -17368 60912464 60949558 58884319 58922450 NC_060931.1 NC_000007.14 96.06 True local misassembly 60951416 60970076 58923285 58941950 NC_060931.1 NC_000007.14 98.81 True local misassembly 60970759 60973206 58941951 58944398 NC_060931.1 NC_000007.14 98.65 True local misassembly 60973207 60974857 58944739 58946390 NC_060931.1 NC_000007.14 98.31 True local misassembly 60974858 60976448 58946731 58948321 NC_060931.1 NC_000007.14 98.49 True local misassembly 60976791 60983314 58948322 58954845 NC_060931.1 NC_000007.14 99.08 True local misassembly 60983655 60987346 58954846 58958536 NC_060931.1 NC_000007.14 98.86 True local misassembly 60987347 60989784 58958879 58961320 NC_060931.1 NC_000007.14 97.99 True local misassembly 60990128 60991475 58961321 58962672 NC_060931.1 NC_000007.14 98.93 True relocation, inconsistency = 656400 61647876 61676037 58962673 58991521 NC_060931.1 NC_000007.14 96.75 True relocation, inconsistency = 401491 62077529 62078273 58991522 58992266 NC_060931.1 NC_000007.14 98.71 True local misassembly 62078616 62084507 58992267 58998160 NC_060931.1 NC_000007.14 98.87 True relocation, inconsistency = 1072216 63156724 63176314 58998161 59017750 NC_060931.1 NC_000007.14 99.13 True relocation, inconsistency = -1134207 62042179 62046119 59017822 59021764 NC_060931.1 NC_000007.14 98.86 True local misassembly 62046462 62048302 59021765 59023605 NC_060931.1 NC_000007.14 99.19 True local misassembly 62048303 62054430 59023948 59030080 NC_060931.1 NC_000007.14 98.17 True relocation, inconsistency = 1236060 63290491 63308101 59030081 59047695 NC_060931.1 NC_000007.14 98.87 True relocation, inconsistency = -2756427 60551777 60559317 59047798 59055344 NC_060931.1 NC_000007.14 98.67 True relocation, inconsistency = 2755408 63315068 63318421 59055687 59059042 NC_060931.1 NC_000007.14 96.51 True local misassembly 63318764 63321199 59059043 59061477 NC_060931.1 NC_000007.14 98.61 True relocation, inconsistency = -2401239 60919961 60927333 59061478 59068852 NC_060931.1 NC_000007.14 99.12 True local misassembly 60928356 60938900 59068853 59079405 NC_060931.1 NC_000007.14 98.85 True local misassembly 60938901 60945312 59080427 59086838 NC_060931.1 NC_000007.14 99.06 True local misassembly 60945655 60946888 59086839 59088073 NC_060931.1 NC_000007.14 98.38 True local misassembly 60946889 60956400 59088752 59098280 NC_060931.1 NC_000007.14 98.89 True local misassembly 60956741 60963742 59098281 59105280 NC_060931.1 NC_000007.14 98.66 True local misassembly 60964764 60967362 59105281 59107879 NC_060931.1 NC_000007.14 98.95 True relocation, inconsistency = -380733 60586630 60603042 59107880 59124291 NC_060931.1 NC_000007.14 98.88 True relocation, inconsistency = 8176 60611219 60613135 59124292 59126209 NC_060931.1 NC_000007.14 96.35 True relocation, inconsistency = 930504 61543640 61563373 59126210 59145598 NC_060931.1 NC_000007.14 97.01 True relocation, inconsistency = -889624 60674006 60686782 59145855 59158632 NC_060931.1 NC_000007.14 98.45 True relocation, inconsistency = 216214 60902997 60931024 59158633 59186667 NC_060931.1 NC_000007.14 98.65 True relocation, inconsistency = -51078 60879947 60886866 59186668 59193594 NC_060931.1 NC_000007.14 98.72 True local misassembly 60887887 60899116 59193595 59204834 NC_060931.1 NC_000007.14 98.96 True relocation, inconsistency = 271441 61170898 61175048 59205175 59209328 NC_060931.1 NC_000007.14 99.18 True local misassembly 61175389 61177848 59209329 59211788 NC_060931.1 NC_000007.14 98.92 True relocation, inconsistency = 821180 61999029 62013539 59211789 59226297 NC_060931.1 NC_000007.14 98.74 True local misassembly 62013880 62017646 59226298 59230066 NC_060931.1 NC_000007.14 98.57 True relocation, inconsistency = -54830 61962957 61971457 59230207 59238704 NC_060931.1 NC_000007.14 98.72 True local misassembly 61971800 61974113 59238705 59241019 NC_060931.1 NC_000007.14 99.18 True local misassembly 61974454 61979190 59241020 59245752 NC_060931.1 NC_000007.14 99.16 True relocation, inconsistency = -1122594 60856597 60860657 59245753 59249816 NC_060931.1 NC_000007.14 98.7 True local misassembly 60861000 60871214 59249817 59260032 NC_060931.1 NC_000007.14 98.66 True relocation, inconsistency = -369957 60501258 60517699 59260033 59276136 NC_060931.1 NC_000007.14 96.53 True relocation, inconsistency = 1428181 61945881 61950317 59276137 59280573 NC_060931.1 NC_000007.14 98.45 True relocation, inconsistency = -1030986 60919332 60941697 59280574 59302259 NC_060931.1 NC_000007.14 95.93 True relocation, inconsistency = -402191 60539507 60542578 59302260 59305673 NC_060931.1 NC_000007.14 97.15 True relocation, inconsistency = 318421 60861000 60872903 59305674 59317583 NC_060931.1 NC_000007.14 98.76 True relocation, inconsistency = 423350 61296254 61321232 59317584 59342217 NC_060931.1 NC_000007.14 97.82 True relocation, inconsistency = 549396 61870629 61912987 59342218 59384590 NC_060931.1 NC_000007.14 97.58 True relocation, inconsistency = -1260148 60652971 60661233 59384722 59392985 NC_060931.1 NC_000007.14 97.92 True local misassembly 60661916 60671114 59392986 59402184 NC_060931.1 NC_000007.14 98.66 True relocation, inconsistency = 225415 60896870 60899340 59402525 59404997 NC_060931.1 NC_000007.14 99.03 True local misassembly 60899683 60905041 59404998 59410357 NC_060931.1 NC_000007.14 99.0 True relocation, inconsistency = 101485 61006527 61033427 59410358 59437287 NC_060931.1 NC_000007.14 98.47 True relocation, inconsistency = 406383 61439811 61457970 59437288 59455100 NC_060931.1 NC_000007.14 96.63 True relocation, inconsistency = -743140 60714949 60715637 59455219 59455906 NC_060931.1 NC_000007.14 97.84 True relocation, inconsistency = 523074 61238712 61252211 59455907 59469404 NC_060931.1 NC_000007.14 98.3 True relocation, inconsistency = -503314 60748898 60751440 59469405 59471948 NC_060931.1 NC_000007.14 98.6 True local misassembly 60751781 60753437 59471949 59473605 NC_060931.1 NC_000007.14 98.64 True relocation, inconsistency = -242308 60511130 60515901 59473606 59478377 NC_060931.1 NC_000007.14 98.91 True relocation, inconsistency = 2951313 63467215 63482042 59478378 59492865 NC_060931.1 NC_000007.14 96.79 True relocation, inconsistency = -2568081 60913962 60929955 59492866 59509210 NC_060931.1 NC_000007.14 96.76 True fake: scaffold gap size wrong estimation (local) 60931582 60933190 59511040 59512649 NC_060931.1 NC_000007.14 99.13 True local misassembly 60933533 60934407 59512650 59513524 NC_060931.1 NC_000007.14 99.2 True local misassembly 60934748 60936116 59513525 59514893 NC_060931.1 NC_000007.14 99.27 True relocation, inconsistency = -9875 60926242 60939180 59514894 59527837 NC_060931.1 NC_000007.14 98.93 True local misassembly 60939523 60940679 59527838 59528994 NC_060931.1 NC_000007.14 98.62 True local misassembly 60940680 60944897 59529335 59533552 NC_060931.1 NC_000007.14 98.92 True relocation, inconsistency = 2470321 63415219 63418544 59533553 59537218 NC_060931.1 NC_000007.14 97.0 True relocation, inconsistency = -1853442 61565103 61595651 59537219 59567081 NC_060931.1 NC_000007.14 96.7 True relocation, inconsistency = -1046326 60550069 60579356 59567825 59597457 NC_060931.1 NC_000007.14 95.49 True relocation, inconsistency = 1001704 61581061 61586570 59597458 59602969 NC_060931.1 NC_000007.14 99.17 True local misassembly 61586911 61596056 59602970 59612117 NC_060931.1 NC_000007.14 99.15 True local misassembly 61596399 61599980 59612118 59615698 NC_060931.1 NC_000007.14 99.22 True local misassembly 61600327 61610081 59615699 59625455 NC_060931.1 NC_000007.14 99.09 True local misassembly 61610422 61616344 59625456 59631376 NC_060931.1 NC_000007.14 99.16 True local misassembly 61616345 61617514 59631717 59632890 NC_060931.1 NC_000007.14 98.38 True relocation, inconsistency = -992500 60625015 60631530 59632891 59639407 NC_060931.1 NC_000007.14 98.97 True local misassembly 60631871 60635685 59639408 59643220 NC_060931.1 NC_000007.14 99.03 True local misassembly 60636368 60639432 59643221 59646287 NC_060931.1 NC_000007.14 98.72 True relocation, inconsistency = 2782925 63422358 63458020 59646288 59681957 NC_060931.1 NC_000007.14 99.13 True relocation, inconsistency = -2487700 60970321 60972802 59681958 59684437 NC_060931.1 NC_000007.14 98.51 True local misassembly 60973485 60976046 59684438 59686999 NC_060931.1 NC_000007.14 98.63 True local misassembly 60976047 60983935 59687340 59695228 NC_060931.1 NC_000007.14 99.14 True local misassembly 60983936 60993248 59695909 59705233 NC_060931.1 NC_000007.14 98.77 True relocation, inconsistency = 632898 61626147 61658520 59705234 59737613 NC_060931.1 NC_000007.14 99.11 True relocation, inconsistency = 348362 62006883 62016957 59737614 59747696 NC_060931.1 NC_000007.14 98.84 True relocation, inconsistency = -1366403 60650614 60661237 59747756 59758719 NC_060931.1 NC_000007.14 95.63 True relocation, inconsistency = 2225027 62886265 62929348 59758720 59801470 NC_060931.1 NC_000007.14 98.29 True relocation, inconsistency = -1921638 61007711 61017858 59801471 59811634 NC_060931.1 NC_000007.14 98.77 True relocation, inconsistency = 1773129 62791225 62802136 59811872 59822785 NC_060931.1 NC_000007.14 96.8 True relocation, inconsistency = -933868 61868269 61907018 59822786 59861210 NC_060931.1 NC_000007.14 96.39 True relocation, inconsistency = -1056178 60850841 60855732 59861211 59866105 NC_060931.1 NC_000007.14 98.39 True relocation, inconsistency = 868924 61724657 61727927 59866106 59869376 NC_060931.1 NC_000007.14 98.78 True relocation, inconsistency = 1150432 62878360 62897664 59869377 59888685 NC_060931.1 NC_000007.14 95.45 True relocation, inconsistency = -2297928 60599737 60613486 59888686 59902440 NC_060931.1 NC_000007.14 98.56 True relocation, inconsistency = 964573 61578060 61584130 59902441 59908510 NC_060931.1 NC_000007.14 99.08 True relocation, inconsistency = -653327 60930804 60963436 59908511 59940806 NC_060931.1 NC_000007.14 97.74 True relocation, inconsistency = 2283045 63246482 63266920 59940807 59960910 NC_060931.1 NC_000007.14 97.44 True relocation, inconsistency = -2345378 60921543 60927766 59960911 59967136 NC_060931.1 NC_000007.14 99.1 True local misassembly 60928449 60936255 59967137 59974947 NC_060931.1 NC_000007.14 98.73 True relocation, inconsistency = 1886537 62822793 62847999 59974948 60000171 NC_060931.1 NC_000007.14 98.8 True local misassembly 62849364 62850548 60000172 60001356 NC_060931.1 NC_000007.14 98.84 True relocation, inconsistency = 409110 63259659 63287642 60001357 60028998 NC_060931.1 NC_000007.14 97.76 True relocation, inconsistency = -2431193 60856559 60858615 60029108 60031166 NC_060931.1 NC_000007.14 98.74 True local misassembly 60858958 60862253 60031167 60034463 NC_060931.1 NC_000007.14 98.67 True local misassembly 60862254 60885403 60035143 60058294 NC_060931.1 NC_000007.14 98.31 True relocation, inconsistency = -138550 60746854 60747711 60058295 60059153 NC_060931.1 NC_000007.14 98.85 True local misassembly 60748054 60758235 60059154 60069333 NC_060931.1 NC_000007.14 97.94 True local misassembly 60758236 60760411 60069674 60071852 NC_060931.1 NC_000007.14 98.44 True local misassembly 60761094 60765814 60071853 60076577 NC_060931.1 NC_000007.14 98.81 True local misassembly 60766497 60778722 60076578 60088803 NC_060931.1 NC_000007.14 98.81 True relocation, inconsistency = 498204 61277266 61281275 60089143 60093155 NC_060931.1 NC_000007.14 98.93 True relocation, inconsistency = -438332 60842944 60852525 60093156 60102736 NC_060931.1 NC_000007.14 98.78 True local misassembly 60852868 60857153 60102737 60107023 NC_060931.1 NC_000007.14 98.93 True relocation, inconsistency = 52439 60909593 60920104 60107024 60117538 NC_060931.1 NC_000007.14 98.66 True local misassembly 60920445 60927431 60117539 60124524 NC_060931.1 NC_000007.14 97.81 True relocation, inconsistency = 167563 61094995 61108247 60124525 60138125 NC_060931.1 NC_000007.14 95.11 True relocation, inconsistency = 2131826 63240074 63281860 60138126 60179909 NC_060931.1 NC_000007.14 98.85 True relocation, inconsistency = -2670249 60611612 60632725 60179910 60200692 NC_060931.1 NC_000007.14 97.1 True relocation, inconsistency = 228831 60861557 60870453 60200693 60209596 NC_060931.1 NC_000007.14 98.67 True local misassembly 60870454 60878908 60209938 60218399 NC_060931.1 NC_000007.14 98.7 True local misassembly 60879251 60885038 60218400 60224191 NC_060931.1 NC_000007.14 98.74 True local misassembly 60885381 60885899 60224192 60224710 NC_060931.1 NC_000007.14 99.04 True local misassembly 60886240 60890286 60224711 60228758 NC_060931.1 NC_000007.14 99.06 True local misassembly 60890629 60899135 60228759 60237272 NC_060931.1 NC_000007.14 98.83 True local misassembly 60899818 60902543 60237273 60240001 NC_060931.1 NC_000007.14 98.35 True local misassembly 60902886 60911477 60240002 60248598 NC_060931.1 NC_000007.14 98.58 True local misassembly 60911818 60914112 60248599 60250895 NC_060931.1 NC_000007.14 97.91 True relocation, scaffold gap is present, inconsistency = 2468613 63382939 63385584 60251109 60253753 NC_060931.1 NC_000007.14 97.62 True local misassembly 63385925 63395033 60253754 60262865 NC_060931.1 NC_000007.14 99.02 True relocation, inconsistency = -2777475 60617562 60618540 60262869 60263847 NC_060931.1 NC_000007.14 98.47 True local misassembly 60618883 60631138 60263848 60276105 NC_060931.1 NC_000007.14 98.78 True relocation, inconsistency = -16352 60614897 60622824 60276216 60284144 NC_060931.1 NC_000007.14 98.93 True local misassembly 60623165 60627422 60284145 60288403 NC_060931.1 NC_000007.14 98.66 True local misassembly 60627763 60637368 60288404 60298012 NC_060931.1 NC_000007.14 98.81 True local misassembly 60637369 60642928 60298353 60303913 NC_060931.1 NC_000007.14 98.78 True local misassembly 60643271 60645845 60303914 60306490 NC_060931.1 NC_000007.14 98.14 True local misassembly 60646186 60649860 60306491 60310163 NC_060931.1 NC_000007.14 98.5 True relocation, inconsistency = 10902 60661176 60666257 60310577 60315660 NC_060931.1 NC_000007.14 98.11 True local misassembly 60666598 60671523 60315661 60320587 NC_060931.1 NC_000007.14 98.71 True relocation, inconsistency = 62000 60733524 60736119 60320588 60323181 NC_060931.1 NC_000007.14 98.79 True relocation, inconsistency = 1257402 61993522 62000948 60323182 60330615 NC_060931.1 NC_000007.14 96.96 True relocation, inconsistency = 252742 62253697 62274596 60330622 60351180 NC_060931.1 NC_000007.14 97.04 True relocation, inconsistency = -1215621 61058976 61085784 60351181 60378005 NC_060931.1 NC_000007.14 98.47 True relocation, inconsistency = 766372 61852157 61859407 60378006 60385262 NC_060931.1 NC_000007.14 99.03 True relocation, inconsistency = 1368524 63227932 63266645 60385263 60423298 NC_060931.1 NC_000007.14 97.28 True relocation, inconsistency = -1370585 61896061 61904073 60423299 60431310 NC_060931.1 NC_000007.14 99.03 True local misassembly 61905097 61917181 60431311 60443401 NC_060931.1 NC_000007.14 99.06 True local misassembly 61917524 61926432 60443402 60452313 NC_060931.1 NC_000007.14 99.17 True local misassembly 61926433 61927776 60452656 60454001 NC_060931.1 NC_000007.14 98.26 True relocation, inconsistency = -1113406 60814371 60831945 60454002 60471576 NC_060931.1 NC_000007.14 98.14 True relocation, inconsistency = 105230 60937176 60950321 60471577 60484721 NC_060931.1 NC_000007.14 98.51 True relocation, inconsistency = 688413 61638735 61649199 60484722 60495191 NC_060931.1 NC_000007.14 95.25 True relocation, inconsistency = -48022 61601178 61614158 60495192 60508181 NC_060931.1 NC_000007.14 98.99 True relocation, inconsistency = 58242 61672401 61695357 60508182 60531822 NC_060931.1 NC_000007.14 96.29 True relocation, inconsistency = 399787 62095358 62108045 60532036 60544719 NC_060931.1 NC_000007.14 97.3 True relocation, inconsistency = -1548644 60559402 60587815 60544720 60572454 NC_060931.1 NC_000007.14 96.61 True relocation, inconsistency = 1137958 61725774 61726656 60572455 60573337 NC_060931.1 NC_000007.14 98.29 True relocation, inconsistency = -1015998 60710998 60726195 60573677 60589223 NC_060931.1 NC_000007.14 96.8 True relocation, inconsistency = 470618 61196814 61214289 60589224 60607047 NC_060931.1 NC_000007.14 97.31 True relocation, inconsistency = -315376 60898914 60939337 60607048 60648865 NC_060931.1 NC_000007.14 95.67 True relocation, inconsistency = -319757 60619581 60640618 60648866 60670930 NC_060931.1 NC_000007.14 95.23 True relocation, inconsistency = 211462 60852081 60857745 60670931 60676597 NC_060931.1 NC_000007.14 99.02 True local misassembly 60857746 60859909 60677621 60679785 NC_060931.1 NC_000007.14 98.75 True local misassembly 60860931 60884765 60679786 60703626 NC_060931.1 NC_000007.14 98.31 True relocation, inconsistency = 654669 61539435 61542336 60703627 60706530 NC_060931.1 NC_000007.14 98.68 True relocation, inconsistency = -754810 60787527 60803907 60706531 60722920 NC_060931.1 NC_000007.14 98.82 True local misassembly 60803908 60811318 60723261 60730672 NC_060931.1 NC_000007.14 98.75 True local misassembly 60811659 60818658 60730673 60737673 NC_060931.1 NC_000007.14 98.16 True local misassembly 60820703 60832775 60737674 60749744 NC_060931.1 NC_000007.14 98.66 True relocation, inconsistency = 697580 61530356 61569383 60749745 60789797 NC_060931.1 NC_000007.14 96.21 True relocation, inconsistency = 1905564 63474948 63482929 60789798 60797779 NC_060931.1 NC_000007.14 99.02 True relocation, inconsistency = -1980170 61502760 61533210 60797780 60828234 NC_060931.1 NC_000007.14 99.31 True relocation, scaffold gap is present, inconsistency = 1397571 60014041 60055188 60919409 60878235 NC_060931.1 NC_000007.14 99.73 True local misassembly 59976073 60013387 60956729 60919410 NC_060931.1 NC_000007.14 99.82 True indel: indel (> 5bp) 59936713 59976072 60996105 60956752 NC_060931.1 NC_000007.14 99.89 True local misassembly 59935056 59935730 60996775 60996106 NC_060931.1 NC_000007.14 99.11 True local misassembly 59907942 59935055 61024106 60996990 NC_060931.1 NC_000007.14 99.89 True indel: indel (> 5bp) 59905103 59907866 61026870 61024107 NC_060931.1 NC_000007.14 99.78 True local misassembly 59888496 59903464 61042449 61027482 NC_060931.1 NC_000007.14 99.81 True indel: indel (> 5bp) 59867606 59888495 61063378 61042499 NC_060931.1 NC_000007.14 99.81 True fake: scaffold gap size wrong estimation (local) 59866369 59867453 61064511 61063427 NC_060931.1 NC_000007.14 100.0 True local misassembly 59856547 59866123 61074088 61064512 NC_060931.1 NC_000007.14 99.93 True indel: indel (> 5bp) 59829183 59856546 61101474 61074111 NC_060931.1 NC_000007.14 99.99 True local misassembly 59816184 59829182 61115156 61102157 NC_060931.1 NC_000007.14 99.73 True relocation, inconsistency = 26656 59786935 59789527 61117750 61115157 NC_060931.1 NC_000007.14 98.65 True local misassembly 59762333 59781465 61136881 61117751 NC_060931.1 NC_000007.14 98.87 True local misassembly 59759038 59761990 61139835 61136882 NC_060931.1 NC_000007.14 98.82 True indel: indel (> 5bp) 59748533 59759037 61150512 61140006 NC_060931.1 NC_000007.14 99.01 True local misassembly 59726016 59748190 61172688 61150513 NC_060931.1 NC_000007.14 98.99 True local misassembly 59714777 59724137 61182050 61172689 NC_060931.1 NC_000007.14 98.85 True local misassembly 59702475 59714435 61194010 61182051 NC_060931.1 NC_000007.14 98.76 True local misassembly 59698605 59701447 61196853 61194011 NC_060931.1 NC_000007.14 98.52 True local misassembly 59689940 59697405 61204319 61196854 NC_060931.1 NC_000007.14 98.81 True relocation, inconsistency = 13670 59651753 59676269 61228838 61204320 NC_060931.1 NC_000007.14 97.92 True local misassembly 59620807 59649359 61257393 61228839 NC_060931.1 NC_000007.14 97.83 True local misassembly 59606511 59620806 61272036 61257736 NC_060931.1 NC_000007.14 99.5 True local misassembly 59590190 59606510 61288562 61272242 NC_060931.1 NC_000007.14 99.85 True local misassembly 59547758 59586983 61327788 61288563 NC_060931.1 NC_000007.14 99.95 True relocation, scaffold gap is present, inconsistency = -293273 59638293 59791030 61527998 61377789 NC_060931.1 NC_000007.14 96.27 True relocation, scaffold gap is present, inconsistency = 180488 60021550 60414216 61578030 61964169 NC_060931.1 NC_000007.14 98.16 True fake: scaffold gap size wrong estimation (local) 60414558 60417438 61967064 61969942 NC_060931.1 NC_000007.14 98.13 True local misassembly 60419871 60422074 61971130 61973333 NC_060931.1 NC_000007.14 97.01 True local misassembly 60423326 60426084 61973334 61976090 NC_060931.1 NC_000007.14 96.3 True relocation, scaffold gap is present, inconsistency = -435304 60040795 60051943 62026105 62037248 NC_060931.1 NC_000007.14 99.59 True relocation, inconsistency = 424597 59355998 59616197 62294414 62037249 NC_060931.1 NC_000007.14 98.23 True relocation, inconsistency = 31314 59285019 59324683 62294415 62334056 NC_060931.1 NC_000007.14 99.71 True local misassembly 59331173 59341465 62334057 62344350 NC_060931.1 NC_000007.14 99.77 True indel: indel (> 5bp) 59341492 59352848 62344351 62355707 NC_060931.1 NC_000007.14 99.73 True indel: indel (> 5bp) 59352849 59356107 62355734 62358992 NC_060931.1 NC_000007.14 99.67 True relocation, inconsistency = 67939 59258571 59284909 62385054 62358993 NC_060931.1 NC_000007.14 99.08 True relocation, inconsistency = 52914 59148386 59205656 62385055 62442304 NC_060931.1 NC_000007.14 99.71 True local misassembly 59206032 59220506 62442305 62456779 NC_060931.1 NC_000007.14 99.78 True relocation, scaffold gap is present, inconsistency = 4310299 63580810 63581699 62506784 62507674 NC_060931.1 NC_000007.14 96.75 True relocation, inconsistency = 123750 63713279 66463526 62515504 65257420 NC_060931.1 NC_000007.14 98.97 True local misassembly 66468597 72179506 65257421 70955807 NC_060931.1 NC_000007.14 99.45 True local misassembly 72192386 84568361 70973914 83317161 NC_060931.1 NC_000007.14 98.31 True local misassembly 84568347 103401494 83317465 102081266 NC_060931.1 NC_000007.14 99.15 True local misassembly 103401658 108735022 102084759 107418983 NC_060931.1 NC_000007.14 99.5 True local misassembly 108738372 158668468 107422333 157480172 NC_060931.1 NC_000007.14 99.21 True indel: indel (> 5bp) 158668710 159541828 157480479 158336029 NC_060931.1 NC_000007.14 96.29 True local misassembly 159545640 159546446 158341492 158342297 NC_060931.1 NC_000007.14 97.77 True local misassembly 159546677 159552675 158342298 158348300 NC_060931.1 NC_000007.14 99.67 True local misassembly 159553092 159553742 158348301 158348951 NC_060931.1 NC_000007.14 99.69 True local misassembly 159553743 159556618 158349353 158352228 NC_060931.1 NC_000007.14 99.3 True local misassembly 159556994 159564778 158352229 158360028 NC_060931.1 NC_000007.14 99.6 True local misassembly 159568475 160563748 158361360 159335248 NC_060931.1 NC_000007.14 95.86 True CONTIG NC_000007.14 159345973 misassembled 182027965 182030880 62936 60001 NC_060929.1 NC_000008.11 97.45 True local misassembly 182026860 182027773 69646 68733 NC_060929.1 NC_000008.11 97.7 True local misassembly 182015489 182026859 81364 70001 NC_060929.1 NC_000008.11 99.02 True indel: indel (> 5bp) 182014162 182015368 82577 81365 NC_060929.1 NC_000008.11 98.76 True local misassembly 182012305 182013221 83494 82578 NC_060929.1 NC_000008.11 100.0 True local misassembly 182009347 182012022 86179 83495 NC_060929.1 NC_000008.11 98.92 True indel: indel (> 5bp) 182008038 182009163 87305 86180 NC_060929.1 NC_000008.11 99.56 True indel: indel (> 5bp) 182000702 182008037 94712 87378 NC_060929.1 NC_000008.11 99.63 True local misassembly 181999655 182000497 95555 94713 NC_060929.1 NC_000008.11 98.81 True translocation 172047025 172082968 131712 95798 NC_060930.1 NC_000008.11 99.56 True indel: indel (> 5bp) 172031043 172046983 147652 131713 NC_060930.1 NC_000008.11 99.44 True translocation 181946827 181947976 148802 147653 NC_060929.1 NC_000008.11 98.09 True local misassembly 181902399 181946826 195256 150838 NC_060929.1 NC_000008.11 99.17 True indel: indel (> 5bp) 181896681 181902398 200991 195278 NC_060929.1 NC_000008.11 99.44 True translocation 192533 196812 200992 205274 NC_060943.1 NC_000008.11 98.81 True translocation 2020 1864003 205275 2085519 NC_060932.1 NC_000008.11 96.86 True local misassembly 1865181 1899356 2086479 2120680 NC_060932.1 NC_000008.11 99.72 True indel: indel (> 5bp) 1899416 1970120 2120681 2191395 NC_060932.1 NC_000008.11 99.97 True local misassembly 1975214 2027794 2191775 2244328 NC_060932.1 NC_000008.11 99.89 True local misassembly 2030111 2033237 2244430 2247574 NC_060932.1 NC_000008.11 99.21 True indel: indel (> 5bp) 2033276 2033964 2247575 2248263 NC_060932.1 NC_000008.11 99.71 True local misassembly 2034046 2038619 2249561 2254134 NC_060932.1 NC_000008.11 99.63 True indel: indel (> 5bp) 2038691 2052332 2254135 2267784 NC_060932.1 NC_000008.11 98.92 True indel: indel (> 5bp) 2052359 2054118 2267785 2269540 NC_060932.1 NC_000008.11 99.43 True local misassembly 2054119 2088214 2269978 2304093 NC_060932.1 NC_000008.11 99.21 True relocation, inconsistency = -15856 2088215 2097774 2319950 2329497 NC_060932.1 NC_000008.11 99.24 True local misassembly 2098095 2114205 2329498 2345612 NC_060932.1 NC_000008.11 99.03 True indel: indel (> 5bp) 2114274 2124338 2345613 2355690 NC_060932.1 NC_000008.11 98.97 True indel: indel (> 5bp) 2124339 2160842 2355729 2392213 NC_060932.1 NC_000008.11 99.62 True local misassembly 2161164 2170736 2392214 2401775 NC_060932.1 NC_000008.11 99.17 True relocation, inconsistency = -15857 2171019 2204724 2417915 2451623 NC_060932.1 NC_000008.11 99.39 True local misassembly 2205160 6052363 2451624 6297862 NC_060932.1 NC_000008.11 99.34 True fake: not a misassembly (possible transposable element) 6052364 6054270 6299768 6297863 NC_060932.1 NC_000008.11 99.84 True fake: not a misassembly (possible transposable element) 6054271 6259718 6299769 6505247 NC_060932.1 NC_000008.11 99.51 True indel: indel (> 5bp) 6259940 6321696 6505541 6567257 NC_060932.1 NC_000008.11 99.61 True indel: indel (> 5bp) 6321742 6358655 6567258 6604185 NC_060932.1 NC_000008.11 99.64 True indel: indel (> 5bp) 6358656 6403779 6604207 6649311 NC_060932.1 NC_000008.11 99.86 True indel: indel (> 5bp) 6403809 6433464 6649312 6678939 NC_060932.1 NC_000008.11 99.64 True local misassembly 6434365 6462741 6678940 6707320 NC_060932.1 NC_000008.11 99.76 True indel: indel (> 5bp) 6462742 6485700 6707345 6730308 NC_060932.1 NC_000008.11 99.72 True local misassembly 6485701 6545930 6730630 6790829 NC_060932.1 NC_000008.11 99.78 True indel: indel (> 5bp) 6546071 6653846 6790830 6898697 NC_060932.1 NC_000008.11 99.77 True indel: indel (> 5bp) 6653847 6688348 6898819 6933352 NC_060932.1 NC_000008.11 99.68 True local misassembly 6688349 6792088 6933662 7037417 NC_060932.1 NC_000008.11 99.47 True indel: indel (> 5bp) 6792089 6845339 7037470 7090728 NC_060932.1 NC_000008.11 99.71 True indel: indel (> 5bp) 6845340 6856788 7090783 7102233 NC_060932.1 NC_000008.11 99.55 True indel: indel (> 5bp) 6856821 6915612 7102234 7161018 NC_060932.1 NC_000008.11 99.9 True indel: indel (> 5bp) 6915634 6949062 7161019 7194443 NC_060932.1 NC_000008.11 99.72 True relocation, inconsistency = -8515 6949063 6957761 7202959 7211660 NC_060932.1 NC_000008.11 99.13 True indel: indel (> 5bp) 6957762 7008798 7211695 7262786 NC_060932.1 NC_000008.11 99.28 True indel: indel (> 5bp) 7008823 7013577 7262787 7267541 NC_060932.1 NC_000008.11 99.62 True local misassembly 7013578 7014608 7269378 7270408 NC_060932.1 NC_000008.11 98.74 True indel: indel (> 5bp) 7014633 7026722 7270409 7282498 NC_060932.1 NC_000008.11 99.53 True relocation, inconsistency = -15244 7026723 7213081 7297743 7484091 NC_060932.1 NC_000008.11 99.81 True indel: indel (> 5bp) 7213114 7226884 7484092 7497868 NC_060932.1 NC_000008.11 99.59 True relocation, inconsistency = -9468 7226885 7288329 7507337 7568766 NC_060932.1 NC_000008.11 99.31 True relocation, inconsistency = 38263 7326593 7374953 7568767 7617127 NC_060932.1 NC_000008.11 99.2 True relocation, scaffold gap is present, inconsistency = -39448 7385506 7388735 7670374 7667128 NC_060932.1 NC_000008.11 96.8 True indel: indel (> 5bp) 7369533 7385505 7686406 7670426 NC_060932.1 NC_000008.11 97.73 True indel: indel (> 5bp) 7342247 7369507 7713707 7686407 NC_060932.1 NC_000008.11 98.35 True indel: indel (> 5bp) 7324719 7342222 7731200 7713708 NC_060932.1 NC_000008.11 98.81 True relocation, inconsistency = 15300 7248743 7309418 7791867 7731201 NC_060932.1 NC_000008.11 99.22 True indel: indel (> 5bp) 7213114 7248709 7827465 7791868 NC_060932.1 NC_000008.11 99.73 True indel: indel (> 5bp) 7124231 7213081 7916348 7827466 NC_060932.1 NC_000008.11 99.53 True local misassembly 7098605 7124230 7942320 7916665 NC_060932.1 NC_000008.11 98.79 True local misassembly 7081416 7097014 7957933 7942321 NC_060932.1 NC_000008.11 96.67 True indel: indel (> 5bp) 7029898 7081415 8009447 7957955 NC_060932.1 NC_000008.11 99.13 True relocation, inconsistency = -4699726 7500037 11729623 12234345 8009448 NC_060932.1 NC_000008.11 99.08 True relocation, scaffold gap is present, inconsistency = -246369 7366787 7696405 12609996 12284346 NC_060932.1 NC_000008.11 97.29 True relocation, inconsistency = 5179715 12877787 44263316 12611663 43983631 NC_060932.1 NC_000008.11 99.52 True fake: scaffold gap size wrong estimation (local) 44318902 44319728 44033773 44034600 NC_060932.1 NC_000008.11 95.9 True local misassembly 44332624 44334760 44046157 44048296 NC_060932.1 NC_000008.11 98.27 True local misassembly 44334761 44338589 44048979 44052808 NC_060932.1 NC_000008.11 99.01 True local misassembly 44341045 44344835 44055945 44059738 NC_060932.1 NC_000008.11 98.95 True local misassembly 44345517 44347736 44059739 44061958 NC_060932.1 NC_000008.11 98.96 True local misassembly 44348929 44350045 44061959 44063076 NC_060932.1 NC_000008.11 99.55 True local misassembly 44351239 44354980 44063077 44066818 NC_060932.1 NC_000008.11 99.49 True local misassembly 44354981 44357558 44069366 44071944 NC_060932.1 NC_000008.11 99.19 True local misassembly 44366368 44371030 44082782 44087446 NC_060932.1 NC_000008.11 99.23 True local misassembly 44381600 44382645 44099380 44100425 NC_060932.1 NC_000008.11 99.62 True local misassembly 44392729 44394502 44110869 44112643 NC_060932.1 NC_000008.11 99.32 True local misassembly 44405309 44407480 44125482 44127653 NC_060932.1 NC_000008.11 98.9 True local misassembly 44408156 44410734 44127654 44130232 NC_060932.1 NC_000008.11 99.22 True local misassembly 44417703 44420957 44137708 44140966 NC_060932.1 NC_000008.11 98.62 True local misassembly 44428378 44430926 44146163 44148711 NC_060932.1 NC_000008.11 98.98 True local misassembly 44431602 44432680 44148712 44149790 NC_060932.1 NC_000008.11 99.63 True local misassembly 44432681 44433507 44150473 44151299 NC_060932.1 NC_000008.11 99.76 True local misassembly 44433508 44436584 44152656 44155730 NC_060932.1 NC_000008.11 99.22 True local misassembly 44437098 44439079 44155731 44157713 NC_060932.1 NC_000008.11 99.04 True local misassembly 44441623 44444777 44157714 44160871 NC_060932.1 NC_000008.11 98.99 True local misassembly 44447428 44452222 44163872 44168667 NC_060932.1 NC_000008.11 99.42 True local misassembly 44454933 44456548 44168668 44170283 NC_060932.1 NC_000008.11 99.32 True local misassembly 44468596 44472580 44182017 44186003 NC_060932.1 NC_000008.11 99.3 True local misassembly 44478455 44485265 44190874 44197686 NC_060932.1 NC_000008.11 99.49 True local misassembly 44492303 44493238 44201682 44202616 NC_060932.1 NC_000008.11 97.86 True indel: indel (> 5bp) 44493239 44496069 44202788 44205620 NC_060932.1 NC_000008.11 98.2 True local misassembly 44496070 44497575 44206298 44207804 NC_060932.1 NC_000008.11 99.4 True local misassembly 44500124 44503135 44207805 44210815 NC_060932.1 NC_000008.11 99.24 True local misassembly 44504296 44509658 44211133 44216494 NC_060932.1 NC_000008.11 99.03 True local misassembly 44512720 44515990 44216495 44219764 NC_060932.1 NC_000008.11 99.63 True local misassembly 44517183 44519176 44219765 44221758 NC_060932.1 NC_000008.11 99.75 True local misassembly 44521045 44525463 44221759 44226177 NC_060932.1 NC_000008.11 99.48 True local misassembly 44525801 44527929 44226178 44228306 NC_060932.1 NC_000008.11 98.92 True fake: scaffold gap size wrong estimation (local) 44528092 44533357 44229098 44234362 NC_060932.1 NC_000008.11 99.39 True local misassembly 44534107 44536068 44234950 44236912 NC_060932.1 NC_000008.11 99.13 True local misassembly 44540555 44542516 44240730 44242691 NC_060932.1 NC_000008.11 99.03 True local misassembly 44547845 44550708 44245665 44248529 NC_060932.1 NC_000008.11 98.32 True local misassembly 44563765 44565037 44260406 44261678 NC_060932.1 NC_000008.11 99.53 True local misassembly 44567421 44571973 44264575 44269129 NC_060932.1 NC_000008.11 99.06 True local misassembly 44574517 44578259 44269130 44272874 NC_060932.1 NC_000008.11 99.2 True local misassembly 44578941 44580693 44272875 44274629 NC_060932.1 NC_000008.11 98.18 True local misassembly 44581375 44583963 44274630 44277217 NC_060932.1 NC_000008.11 98.53 True local misassembly 44591004 44593881 44280354 44283230 NC_060932.1 NC_000008.11 99.31 True local misassembly 44593882 44596153 44284424 44286695 NC_060932.1 NC_000008.11 99.43 True local misassembly 44610841 44612819 44300020 44301998 NC_060932.1 NC_000008.11 99.34 True local misassembly 44614014 44615990 44301999 44303976 NC_060932.1 NC_000008.11 99.24 True local misassembly 44615991 44616522 44304652 44305182 NC_060932.1 NC_000008.11 98.5 True local misassembly 44616523 44620490 44305696 44309662 NC_060932.1 NC_000008.11 99.07 True local misassembly 44627695 44630243 44318928 44321478 NC_060932.1 NC_000008.11 98.94 True local misassembly 44631438 44633400 44321479 44323442 NC_060932.1 NC_000008.11 99.24 True local misassembly 44639957 44643620 44329341 44333004 NC_060932.1 NC_000008.11 99.32 True local misassembly 44644815 44646474 44333005 44334663 NC_060932.1 NC_000008.11 99.22 True local misassembly 44648582 44650542 44335253 44337212 NC_060932.1 NC_000008.11 99.03 True local misassembly 44651292 44653254 44337800 44339761 NC_060932.1 NC_000008.11 99.03 True local misassembly 44658072 44661390 44344768 44348086 NC_060932.1 NC_000008.11 99.31 True local misassembly 44666752 44672884 44352119 44358250 NC_060932.1 NC_000008.11 98.97 True local misassembly 44672885 44674398 44360119 44361633 NC_060932.1 NC_000008.11 99.21 True local misassembly 44674912 44676908 44361634 44363633 NC_060932.1 NC_000008.11 98.85 True local misassembly 44676909 44678317 44364309 44365717 NC_060932.1 NC_000008.11 99.43 True local misassembly 44678318 44680070 44367073 44368824 NC_060932.1 NC_000008.11 98.92 True local misassembly 44682582 44683304 44370492 44371216 NC_060932.1 NC_000008.11 95.03 True local misassembly 44683986 44688498 44371217 44375731 NC_060932.1 NC_000008.11 99.0 True local misassembly 44695636 44700696 44383563 44388624 NC_060932.1 NC_000008.11 98.95 True local misassembly 44700697 44702402 44389300 44391006 NC_060932.1 NC_000008.11 99.36 True indel: indel (> 5bp) 44702403 44706026 44391178 44394801 NC_060932.1 NC_000008.11 99.39 True local misassembly 44706027 44709909 44397183 44401067 NC_060932.1 NC_000008.11 98.3 True local misassembly 44709910 44710720 44401581 44402391 NC_060932.1 NC_000008.11 97.78 True local misassembly 44710721 44712643 44403585 44405506 NC_060932.1 NC_000008.11 99.38 True local misassembly 44712644 44715395 44406020 44408772 NC_060932.1 NC_000008.11 99.13 True local misassembly 44717884 44721243 44410580 44413940 NC_060932.1 NC_000008.11 99.23 True local misassembly 44721244 44723740 44416315 44418811 NC_060932.1 NC_000008.11 99.12 True local misassembly 44736123 44736736 44435144 44435757 NC_060932.1 NC_000008.11 99.67 True local misassembly 44741421 44742859 44441311 44442749 NC_060932.1 NC_000008.11 99.86 True local misassembly 44744214 44746644 44442750 44445180 NC_060932.1 NC_000008.11 98.89 True local misassembly 44759412 44760645 44455449 44456681 NC_060932.1 NC_000008.11 99.59 True local misassembly 44760646 44762001 44457195 44458550 NC_060932.1 NC_000008.11 98.67 True local misassembly 44762002 44762790 44460933 44461721 NC_060932.1 NC_000008.11 99.37 True local misassembly 44762791 44764247 44464108 44465564 NC_060932.1 NC_000008.11 99.79 True local misassembly 44765441 44767262 44465565 44467386 NC_060932.1 NC_000008.11 99.07 True local misassembly 44767263 44769984 44467900 44470621 NC_060932.1 NC_000008.11 99.27 True local misassembly 44774669 44777661 44474982 44477975 NC_060932.1 NC_000008.11 99.17 True local misassembly 44788840 44789346 44495616 44496122 NC_060932.1 NC_000008.11 100.0 True local misassembly 44802831 44807348 44510468 44514991 NC_060932.1 NC_000008.11 99.18 True local misassembly 44813227 44815805 44521220 44523799 NC_060932.1 NC_000008.11 99.15 True local misassembly 44817132 44821450 44525638 44529956 NC_060932.1 NC_000008.11 99.31 True local misassembly 44825972 44829127 44536181 44539335 NC_060932.1 NC_000008.11 99.59 True local misassembly 44829877 44833618 44539924 44543666 NC_060932.1 NC_000008.11 99.23 True local misassembly 44834975 44838274 44543667 44546966 NC_060932.1 NC_000008.11 99.61 True local misassembly 44838275 44843227 44548835 44553788 NC_060932.1 NC_000008.11 99.03 True local misassembly 44843815 44849489 44554538 44560210 NC_060932.1 NC_000008.11 98.91 True local misassembly 44857915 44859746 44569660 44571489 NC_060932.1 NC_000008.11 98.69 True local misassembly 44861102 44863411 44571490 44573804 NC_060932.1 NC_000008.11 99.27 True local misassembly 44864768 44866403 44573805 44575440 NC_060932.1 NC_000008.11 99.45 True local misassembly 44866404 44869559 44576116 44579270 NC_060932.1 NC_000008.11 99.56 True local misassembly 44870309 44873911 44579858 44583462 NC_060932.1 NC_000008.11 99.45 True local misassembly 44873912 44876012 44584656 44586757 NC_060932.1 NC_000008.11 99.19 True local misassembly 44886447 44889602 44595861 44599014 NC_060932.1 NC_000008.11 99.05 True local misassembly 44893446 44895657 44603045 44605257 NC_060932.1 NC_000008.11 99.01 True local misassembly 44895658 44898705 44606451 44609497 NC_060932.1 NC_000008.11 99.48 True local misassembly 44898706 44900839 44610011 44612144 NC_060932.1 NC_000008.11 99.3 True local misassembly 44900840 44903447 44614013 44616625 NC_060932.1 NC_000008.11 99.23 True local misassembly 44908515 44913775 44620840 44626100 NC_060932.1 NC_000008.11 99.54 True local misassembly 44914969 44915545 44626101 44626676 NC_060932.1 NC_000008.11 98.79 True local misassembly 44916325 44919450 44627294 44630419 NC_060932.1 NC_000008.11 99.3 True local misassembly 44927877 44929676 44638701 44640500 NC_060932.1 NC_000008.11 99.33 True local misassembly 44940280 44943395 44651282 44654397 NC_060932.1 NC_000008.11 99.23 True local misassembly 44943396 44945377 44654911 44656893 NC_060932.1 NC_000008.11 99.65 True local misassembly 44946734 44948493 44656894 44658653 NC_060932.1 NC_000008.11 99.26 True local misassembly 44948494 44953054 44661038 44665598 NC_060932.1 NC_000008.11 99.54 True local misassembly 44955573 44959914 44668955 44673301 NC_060932.1 NC_000008.11 99.1 True local misassembly 44961109 44970050 44673302 44682243 NC_060932.1 NC_000008.11 99.37 True local misassembly 44971244 44972188 44682244 44683188 NC_060932.1 NC_000008.11 99.05 True local misassembly 44974738 44977320 44683189 44685774 NC_060932.1 NC_000008.11 99.19 True local misassembly 44978002 44983187 44685775 44690957 NC_060932.1 NC_000008.11 98.65 True local misassembly 44985293 44988448 44691545 44694699 NC_060932.1 NC_000008.11 98.8 True local misassembly 44998200 44999601 44703443 44704844 NC_060932.1 NC_000008.11 99.43 True local misassembly 45000958 45005230 44704845 44709115 NC_060932.1 NC_000008.11 99.27 True local misassembly 45008559 45011192 44712119 44714752 NC_060932.1 NC_000008.11 99.28 True local misassembly 45011193 45014262 44715946 44719015 NC_060932.1 NC_000008.11 99.22 True local misassembly 45019079 45024743 44724879 44730544 NC_060932.1 NC_000008.11 99.44 True local misassembly 45024744 45026611 44731058 44732926 NC_060932.1 NC_000008.11 98.13 True local misassembly 45027293 45029304 44732927 44734938 NC_060932.1 NC_000008.11 98.01 True local misassembly 45033725 45035966 44740379 44742621 NC_060932.1 NC_000008.11 98.53 True local misassembly 45037323 45041537 44742622 44746836 NC_060932.1 NC_000008.11 99.5 True local misassembly 45043539 45049243 44748001 44753704 NC_060932.1 NC_000008.11 99.44 True local misassembly 45056989 45063566 44760125 44766705 NC_060932.1 NC_000008.11 99.24 True local misassembly 45064922 45069916 44766706 44771702 NC_060932.1 NC_000008.11 99.34 True local misassembly 45070430 45071185 44771703 44772460 NC_060932.1 NC_000008.11 99.6 True local misassembly 45071186 45075046 44773655 44777513 NC_060932.1 NC_000008.11 99.17 True local misassembly 45075047 45076347 44778028 44779327 NC_060932.1 NC_000008.11 98.46 True local misassembly 45076642 45077703 44780644 44781704 NC_060932.1 NC_000008.11 97.36 True local misassembly 45077704 45080252 44782218 44784768 NC_060932.1 NC_000008.11 98.9 True local misassembly 45080253 45081929 44785282 44786958 NC_060932.1 NC_000008.11 98.69 True local misassembly 45085507 45087760 44786959 44789212 NC_060932.1 NC_000008.11 99.16 True local misassembly 45089091 45091091 44789701 44791706 NC_060932.1 NC_000008.11 98.85 True local misassembly 45091773 45094244 44791707 44794175 NC_060932.1 NC_000008.11 98.22 True local misassembly 45094245 45096752 44794690 44797193 NC_060932.1 NC_000008.11 99.16 True local misassembly 45099863 45105590 44798958 44804682 NC_060932.1 NC_000008.11 99.25 True local misassembly 45105591 45107728 44805196 44807338 NC_060932.1 NC_000008.11 98.65 True local misassembly 45107729 45109491 44810564 44812326 NC_060932.1 NC_000008.11 99.72 True local misassembly 45109492 45112040 44812840 44815385 NC_060932.1 NC_000008.11 99.29 True local misassembly 45112041 45117342 44817092 44822394 NC_060932.1 NC_000008.11 99.45 True local misassembly 45126448 45129018 44829131 44831700 NC_060932.1 NC_000008.11 99.46 True local misassembly 45129019 45130414 44832214 44833609 NC_060932.1 NC_000008.11 99.28 True local misassembly 45140169 45145544 44841673 44847049 NC_060932.1 NC_000008.11 99.59 True local misassembly 45146739 45150756 44847050 44851067 NC_060932.1 NC_000008.11 99.58 True local misassembly 45152114 45152801 44851068 44851756 NC_060932.1 NC_000008.11 99.27 True local misassembly 45153483 45157427 44851757 44855702 NC_060932.1 NC_000008.11 99.24 True local misassembly 45164632 45167431 44859353 44862152 NC_060932.1 NC_000008.11 99.61 True local misassembly 45169980 45173547 44862153 44865720 NC_060932.1 NC_000008.11 99.55 True local misassembly 45174228 45175596 44865721 44867088 NC_060932.1 NC_000008.11 98.69 True indel: indel (> 5bp) 45175597 45184032 44867260 44875687 NC_060932.1 NC_000008.11 97.74 True local misassembly 45184713 45186060 44875688 44877036 NC_060932.1 NC_000008.11 99.48 True local misassembly 45186574 45187294 44877037 44877758 NC_060932.1 NC_000008.11 98.48 True local misassembly 45191431 45192066 44879833 44880469 NC_060932.1 NC_000008.11 96.55 True local misassembly 45192580 45193959 44880470 44881849 NC_060932.1 NC_000008.11 99.64 True local misassembly 45195828 45198166 44881850 44884189 NC_060932.1 NC_000008.11 99.19 True local misassembly 45198680 45200066 44884190 44885577 NC_060932.1 NC_000008.11 98.85 True local misassembly 45207842 45209547 44893998 44895703 NC_060932.1 NC_000008.11 99.71 True indel: indel (> 5bp) 45209548 45211135 44895875 44897463 NC_060932.1 NC_000008.11 99.5 True local misassembly 45211136 45214310 44898145 44901319 NC_060932.1 NC_000008.11 99.53 True local misassembly 45216952 45220333 44903112 44906490 NC_060932.1 NC_000008.11 96.24 True local misassembly 45234925 45236153 44918813 44920041 NC_060932.1 NC_000008.11 99.59 True local misassembly 45251995 45257264 44936520 44941793 NC_060932.1 NC_000008.11 99.07 True local misassembly 45258971 45260988 44941794 44943811 NC_060932.1 NC_000008.11 99.55 True local misassembly 45272387 45274784 44954156 44956555 NC_060932.1 NC_000008.11 99.42 True local misassembly 45276491 45279097 44956556 44959162 NC_060932.1 NC_000008.11 99.31 True local misassembly 45301273 45305534 44982148 44986412 NC_060932.1 NC_000008.11 99.23 True local misassembly 45305535 45306883 44990481 44991828 NC_060932.1 NC_000008.11 99.18 True local misassembly 45306884 45309158 44992508 44994783 NC_060932.1 NC_000008.11 99.56 True local misassembly 45313512 45316597 44998275 45001361 NC_060932.1 NC_000008.11 99.29 True local misassembly 45320656 45324292 45003367 45007005 NC_060932.1 NC_000008.11 99.07 True local misassembly 45331379 45336328 45012717 45017666 NC_060932.1 NC_000008.11 98.77 True local misassembly 45336329 45337500 45018342 45019513 NC_060932.1 NC_000008.11 98.29 True local misassembly 45337501 45338694 45020190 45021383 NC_060932.1 NC_000008.11 99.83 True local misassembly 45338695 45340111 45024778 45026194 NC_060932.1 NC_000008.11 99.36 True local misassembly 45353166 45356068 45038025 45040926 NC_060932.1 NC_000008.11 99.48 True local misassembly 45356069 45360926 45041602 45046460 NC_060932.1 NC_000008.11 99.49 True local misassembly 45380594 45381151 45064372 45064929 NC_060932.1 NC_000008.11 100.0 True local misassembly 45394637 45397841 45076327 45079536 NC_060932.1 NC_000008.11 99.19 True local misassembly 45401389 45406190 45081880 45086682 NC_060932.1 NC_000008.11 99.38 True local misassembly 45428822 45430060 45108233 45109473 NC_060932.1 NC_000008.11 99.03 True local misassembly 45431252 45435390 45109474 45113613 NC_060932.1 NC_000008.11 99.25 True local misassembly 45440750 45442518 45120137 45121906 NC_060932.1 NC_000008.11 98.87 True local misassembly 45463116 45464172 45146348 45147403 NC_060932.1 NC_000008.11 99.05 True local misassembly 45466916 45471136 45147437 45151658 NC_060932.1 NC_000008.11 99.03 True local misassembly 45479207 45481622 45159374 45161790 NC_060932.1 NC_000008.11 99.5 True local misassembly 45484654 45488953 45164473 45168774 NC_060932.1 NC_000008.11 98.95 True local misassembly 45490147 45495228 45168775 45173856 NC_060932.1 NC_000008.11 99.19 True fake: scaffold gap size wrong estimation (local) 45518888 45520895 45198019 45200026 NC_060932.1 NC_000008.11 99.65 True local misassembly 45520896 45523281 45200702 45203087 NC_060932.1 NC_000008.11 99.12 True local misassembly 45523282 45526002 45207501 45210222 NC_060932.1 NC_000008.11 99.34 True local misassembly 45526003 45528076 45212934 45215006 NC_060932.1 NC_000008.11 98.84 True local misassembly 45532826 45535247 45223467 45225888 NC_060932.1 NC_000008.11 99.71 True local misassembly 45547378 45549557 45236955 45239136 NC_060932.1 NC_000008.11 99.31 True local misassembly 45563341 45565637 45246617 45248913 NC_060932.1 NC_000008.11 99.52 True local misassembly 45566831 45567616 45248914 45249699 NC_060932.1 NC_000008.11 99.49 True local misassembly 45568298 45571502 45249700 45252904 NC_060932.1 NC_000008.11 98.94 True local misassembly 45575052 45578004 45257294 45260246 NC_060932.1 NC_000008.11 99.42 True local misassembly 45578005 45579474 45260760 45262231 NC_060932.1 NC_000008.11 99.18 True local misassembly 45579475 45580553 45264099 45265176 NC_060932.1 NC_000008.11 99.26 True local misassembly 45580554 45583304 45265690 45268442 NC_060932.1 NC_000008.11 98.51 True local misassembly 45586276 45589431 45271061 45274216 NC_060932.1 NC_000008.11 99.05 True local misassembly 45594950 45598691 45277867 45281610 NC_060932.1 NC_000008.11 98.53 True local misassembly 45598692 45602512 45282286 45286106 NC_060932.1 NC_000008.11 99.24 True local misassembly 45603194 45604414 45286107 45287326 NC_060932.1 NC_000008.11 98.12 True local misassembly 45607272 45611013 45289171 45292920 NC_060932.1 NC_000008.11 95.73 True local misassembly 45612309 45614879 45293373 45295944 NC_060932.1 NC_000008.11 99.07 True local misassembly 45614880 45615768 45296462 45297350 NC_060932.1 NC_000008.11 98.2 True local misassembly 45617126 45620798 45297351 45301024 NC_060932.1 NC_000008.11 98.83 True local misassembly 45620799 45625001 45301700 45305901 NC_060932.1 NC_000008.11 99.29 True local misassembly 45626358 45629930 45305902 45309476 NC_060932.1 NC_000008.11 98.8 True local misassembly 45629931 45633084 45312028 45315184 NC_060932.1 NC_000008.11 98.67 True local misassembly 45633130 45636929 45316076 45319873 NC_060932.1 NC_000008.11 97.0 True local misassembly 45647936 45649546 45329544 45331154 NC_060932.1 NC_000008.11 99.07 True local misassembly 45649547 45653600 45332348 45336399 NC_060932.1 NC_000008.11 99.33 True local misassembly 45653601 45655668 45336913 45338982 NC_060932.1 NC_000008.11 98.41 True local misassembly 45657279 45660547 45340586 45343855 NC_060932.1 NC_000008.11 98.78 True fake: scaffold gap size wrong estimation (local) 45665739 45668858 45347791 45350913 NC_060932.1 NC_000008.11 99.04 True local misassembly 45670896 45674131 45350914 45354153 NC_060932.1 NC_000008.11 99.01 True local misassembly 45677844 45682827 45359375 45364358 NC_060932.1 NC_000008.11 99.0 True local misassembly 45683341 45685368 45364359 45366386 NC_060932.1 NC_000008.11 99.26 True local misassembly 45685369 45688463 45367062 45370157 NC_060932.1 NC_000008.11 98.84 True local misassembly 45689145 45690343 45370158 45371355 NC_060932.1 NC_000008.11 98.67 True local misassembly 45691235 45693645 45371401 45373816 NC_060932.1 NC_000008.11 95.99 True local misassembly 45693646 45694851 45374492 45375698 NC_060932.1 NC_000008.11 99.42 True local misassembly 45694852 45695414 45376373 45376935 NC_060932.1 NC_000008.11 97.51 True local misassembly 45695415 45696800 45377450 45378834 NC_060932.1 NC_000008.11 97.69 True indel: indel (> 5bp) 45696972 45700178 45378835 45382050 NC_060932.1 NC_000008.11 95.3 True local misassembly 45701373 45705072 45382051 45385749 NC_060932.1 NC_000008.11 98.92 True local misassembly 45705073 45708442 45386263 45389636 NC_060932.1 NC_000008.11 98.78 True local misassembly 45708443 45709619 45394214 45395390 NC_060932.1 NC_000008.11 98.3 True local misassembly 45709620 45710182 45396066 45396628 NC_060932.1 NC_000008.11 99.64 True local misassembly 45710183 45715135 45397142 45402096 NC_060932.1 NC_000008.11 98.53 True local misassembly 45715136 45722584 45404809 45412262 NC_060932.1 NC_000008.11 98.54 True local misassembly 45722585 45724609 45413621 45415645 NC_060932.1 NC_000008.11 98.37 True local misassembly 45732604 45737349 45421769 45426513 NC_060932.1 NC_000008.11 98.71 True local misassembly 45740632 45742610 45430813 45432792 NC_060932.1 NC_000008.11 98.54 True local misassembly 45743774 45747757 45433438 45437423 NC_060932.1 NC_000008.11 99.27 True local misassembly 45749632 45752190 45437424 45439981 NC_060932.1 NC_000008.11 99.18 True local misassembly 45763681 45766926 45449102 45452347 NC_060932.1 NC_000008.11 99.38 True local misassembly 45768801 45771331 45452348 45454878 NC_060932.1 NC_000008.11 99.29 True local misassembly 45773001 45773870 45457225 45458096 NC_060932.1 NC_000008.11 99.2 True local misassembly 45773871 45777842 45458610 45462582 NC_060932.1 NC_000008.11 99.04 True local misassembly 45781686 45786326 45467101 45471742 NC_060932.1 NC_000008.11 98.58 True local misassembly 45788783 45791331 45473686 45476234 NC_060932.1 NC_000008.11 99.22 True local misassembly 45791332 45794279 45476911 45479862 NC_060932.1 NC_000008.11 98.48 True local misassembly 45794280 45798184 45480544 45484448 NC_060932.1 NC_000008.11 99.46 True local misassembly 45798185 45800166 45484962 45486942 NC_060932.1 NC_000008.11 98.54 True local misassembly 45800167 45803776 45487618 45491227 NC_060932.1 NC_000008.11 99.42 True local misassembly 45804969 45805662 45491228 45491921 NC_060932.1 NC_000008.11 98.7 True local misassembly 45805663 45807649 45492603 45494590 NC_060932.1 NC_000008.11 99.04 True local misassembly 45807987 45808864 45494591 45495467 NC_060932.1 NC_000008.11 98.41 True local misassembly 45808865 45810251 45495981 45497367 NC_060932.1 NC_000008.11 98.92 True fake: scaffold gap size wrong estimation (local) 45817160 45818352 45506133 45507325 NC_060932.1 NC_000008.11 98.91 True local misassembly 45818353 45818937 45508001 45508586 NC_060932.1 NC_000008.11 98.63 True local misassembly 45818938 45820275 45509101 45510437 NC_060932.1 NC_000008.11 98.95 True local misassembly 45820276 45821110 45510952 45511787 NC_060932.1 NC_000008.11 97.13 True local misassembly 45821111 45822987 45512981 45514857 NC_060932.1 NC_000008.11 99.47 True local misassembly 45822988 45827404 45515371 45519789 NC_060932.1 NC_000008.11 98.37 True local misassembly 45827405 45829953 45520303 45522849 NC_060932.1 NC_000008.11 98.43 True local misassembly 45830467 45833385 45522850 45525768 NC_060932.1 NC_000008.11 98.66 True local misassembly 45834580 45837261 45525769 45528451 NC_060932.1 NC_000008.11 98.55 True local misassembly 45838617 45839492 45528452 45529327 NC_060932.1 NC_000008.11 98.52 True local misassembly 45840686 45843725 45529328 45532368 NC_060932.1 NC_000008.11 98.75 True local misassembly 45849278 45853212 45536372 45540307 NC_060932.1 NC_000008.11 99.01 True local misassembly 45856925 45858003 45544694 45545772 NC_060932.1 NC_000008.11 99.35 True local misassembly 45858685 45860696 45545773 45547784 NC_060932.1 NC_000008.11 99.35 True local misassembly 45866473 45868506 45552552 45554586 NC_060932.1 NC_000008.11 99.31 True local misassembly 45872596 45877073 45558330 45562809 NC_060932.1 NC_000008.11 99.2 True local misassembly 45877755 45879697 45562810 45564753 NC_060932.1 NC_000008.11 98.35 True local misassembly 45879698 45882132 45565429 45567863 NC_060932.1 NC_000008.11 98.85 True local misassembly 45882133 45883218 45568377 45569462 NC_060932.1 NC_000008.11 98.43 True local misassembly 45887473 45890236 45569463 45572225 NC_060932.1 NC_000008.11 98.95 True local misassembly 45891672 45896009 45572305 45576644 NC_060932.1 NC_000008.11 98.82 True local misassembly 45896010 45898940 45577319 45580248 NC_060932.1 NC_000008.11 99.32 True local misassembly 45898941 45899751 45583475 45584286 NC_060932.1 NC_000008.11 98.03 True local misassembly 45899752 45904263 45584962 45589472 NC_060932.1 NC_000008.11 99.2 True local misassembly 45907562 45909996 45590735 45593169 NC_060932.1 NC_000008.11 98.77 True local misassembly 45909997 45912062 45593683 45595748 NC_060932.1 NC_000008.11 99.03 True local misassembly 45920004 45922018 45600623 45602639 NC_060932.1 NC_000008.11 99.21 True local misassembly 45922019 45926964 45603315 45608262 NC_060932.1 NC_000008.11 99.09 True local misassembly 45931870 45935804 45615361 45619296 NC_060932.1 NC_000008.11 99.01 True local misassembly 45939517 45940739 45623681 45624903 NC_060932.1 NC_000008.11 98.86 True local misassembly 45947709 45950481 45631187 45633960 NC_060932.1 NC_000008.11 98.7 True local misassembly 45954130 45955961 45636581 45638412 NC_060932.1 NC_000008.11 99.07 True local misassembly 45969737 45970996 45650310 45651570 NC_060932.1 NC_000008.11 99.44 True local misassembly 45972705 45975478 45653273 45656047 NC_060932.1 NC_000008.11 98.6 True local misassembly 45985450 45987360 45667205 45669115 NC_060932.1 NC_000008.11 99.22 True local misassembly 45989234 45991189 45669116 45671071 NC_060932.1 NC_000008.11 99.39 True local misassembly 45991190 45992412 45671747 45672970 NC_060932.1 NC_000008.11 99.35 True local misassembly 46000738 46002548 45677900 45679712 NC_060932.1 NC_000008.11 98.62 True local misassembly 46003742 46005832 45679713 45681804 NC_060932.1 NC_000008.11 98.95 True local misassembly 46009410 46010796 45684864 45686251 NC_060932.1 NC_000008.11 98.41 True local misassembly 46023833 46025795 45693992 45695953 NC_060932.1 NC_000008.11 98.68 True local misassembly 46033375 46035408 45707262 45709296 NC_060932.1 NC_000008.11 98.87 True local misassembly 46036572 46039150 45709942 45712519 NC_060932.1 NC_000008.11 99.11 True local misassembly 46040314 46042892 45713165 45715744 NC_060932.1 NC_000008.11 99.03 True local misassembly 46048342 46051701 45721186 45724546 NC_060932.1 NC_000008.11 98.42 True local misassembly 46051702 46052303 45725224 45725825 NC_060932.1 NC_000008.11 98.67 True local misassembly 46052895 46053461 45727935 45728501 NC_060932.1 NC_000008.11 99.12 True local misassembly 46053462 46055443 45729015 45730997 NC_060932.1 NC_000008.11 99.04 True local misassembly 46055444 46056522 45731673 45732751 NC_060932.1 NC_000008.11 99.81 True local misassembly 46057204 46059209 45732752 45734759 NC_060932.1 NC_000008.11 98.85 True local misassembly 46069409 46070824 45742074 45743491 NC_060932.1 NC_000008.11 98.66 True local misassembly 46071412 46074485 45744241 45747315 NC_060932.1 NC_000008.11 99.12 True local misassembly 46074486 46077533 45747991 45751039 NC_060932.1 NC_000008.11 98.98 True local misassembly 46077534 46080594 45751715 45754775 NC_060932.1 NC_000008.11 99.09 True local misassembly 46080595 46081179 45755451 45756035 NC_060932.1 NC_000008.11 99.66 True local misassembly 46081180 46083655 45759774 45762250 NC_060932.1 NC_000008.11 98.22 True local misassembly 46083656 46086068 45764796 45767207 NC_060932.1 NC_000008.11 98.8 True local misassembly 46086069 46088102 45767721 45769755 NC_060932.1 NC_000008.11 98.28 True local misassembly 46093710 46095713 45773328 45775333 NC_060932.1 NC_000008.11 98.65 True local misassembly 46095714 46098148 45776009 45778445 NC_060932.1 NC_000008.11 99.02 True local misassembly 46098149 46100214 45778959 45781025 NC_060932.1 NC_000008.11 98.4 True local misassembly 46107926 46110057 45788237 45790368 NC_060932.1 NC_000008.11 98.41 True local misassembly 46117483 46119565 45798977 45801060 NC_060932.1 NC_000008.11 98.66 True local misassembly 46120247 46121725 45801061 45802541 NC_060932.1 NC_000008.11 99.12 True local misassembly 46122186 46123557 45802542 45803910 NC_060932.1 NC_000008.11 96.43 True local misassembly 46124750 46127455 45803911 45806617 NC_060932.1 NC_000008.11 98.78 True local misassembly 46135943 46139228 45817663 45820951 NC_060932.1 NC_000008.11 98.97 True local misassembly 46151883 46155168 45834490 45837775 NC_060932.1 NC_000008.11 98.69 True local misassembly 46159173 46162458 45843836 45847119 NC_060932.1 NC_000008.11 99.12 True local misassembly 46165108 46170734 45849439 45855064 NC_060932.1 NC_000008.11 97.97 True local misassembly 46170735 46173967 45856421 45859655 NC_060932.1 NC_000008.11 98.39 True local misassembly 46175322 46176518 45859656 45860852 NC_060932.1 NC_000008.11 97.83 True local misassembly 46176519 46179417 45861191 45864089 NC_060932.1 NC_000008.11 98.21 True fake: scaffold gap size wrong estimation (local) 46182088 46193116 45866173 45877206 NC_060932.1 NC_000008.11 97.75 True fake: scaffold gap size wrong estimation (local) 46242729 86207134 45927275 85664158 NC_060932.1 NC_000008.11 99.16 True relocation, scaffold gap is present, inconsistency = 143153 86400371 112191464 85714242 111062862 NC_060932.1 NC_000008.11 98.08 True fake: not a misassembly (possible transposable element) 112191491 112192351 111063728 111062868 NC_060932.1 NC_000008.11 99.88 True fake: not a misassembly (possible transposable element) 112192352 132356344 111063729 131230559 NC_060932.1 NC_000008.11 99.62 True indel: indel (> 5bp) 132356861 134437055 131231025 133312972 NC_060932.1 NC_000008.11 99.61 True local misassembly 134437440 145181294 133313579 144021093 NC_060932.1 NC_000008.11 99.08 True local misassembly 145183563 146256637 144022279 145078636 NC_060932.1 NC_000008.11 97.86 True CONTIG NC_000008.11 145138636 misassembled 4776 40543234 10977 40529054 NC_060933.1 NC_000009.12 99.53 True relocation, scaffold gap is present, inconsistency = 37032865 77602849 77604312 40557278 40555804 NC_060933.1 NC_000009.12 98.17 True fake: scaffold gap size wrong estimation (local) 77580263 77602585 40584283 40561973 NC_060933.1 NC_000009.12 99.79 True indel: indel (> 5bp) 77566277 77580262 40598308 40584320 NC_060933.1 NC_000009.12 99.84 True local misassembly 77549216 77564615 40613701 40598309 NC_060933.1 NC_000009.12 99.87 True indel: indel (> 5bp) 77513111 77549215 40649792 40613726 NC_060933.1 NC_000009.12 99.78 True indel: indel (> 5bp) 77512567 77513110 40650410 40649861 NC_060933.1 NC_000009.12 96.55 True indel: indel (> 5bp) 77511133 77511966 40651715 40650890 NC_060933.1 NC_000009.12 99.91 True relocation, inconsistency = 34864529 42069134 42646603 41225986 40651716 NC_060933.1 NC_000009.12 95.64 True fake: scaffold gap size wrong estimation (local) 42061947 42067549 41235017 41229379 NC_060933.1 NC_000009.12 97.62 True local misassembly 42057844 42059336 41236513 41235018 NC_060933.1 NC_000009.12 97.13 True indel: indel (> 5bp) 42056578 42057819 41237752 41236514 NC_060933.1 NC_000009.12 97.5 True fake: scaffold gap size wrong estimation (local) 41758301 42056370 41536378 41238505 NC_060933.1 NC_000009.12 98.48 True relocation, inconsistency = 1030363 43086734 44777470 41536379 43222128 NC_060933.1 NC_000009.12 99.04 True relocation, scaffold gap is present, inconsistency = 26994 44818518 44822892 43236182 43240556 NC_060933.1 NC_000009.12 99.98 True local misassembly 44824533 44838331 43240557 43254331 NC_060933.1 NC_000009.12 99.63 True indel: indel (> 5bp) 44838357 44847189 43254332 43263165 NC_060933.1 NC_000009.12 99.73 True fake: scaffold gap size wrong estimation (local) 44847190 44854283 43263821 43270903 NC_060933.1 NC_000009.12 99.55 True fake: scaffold gap size wrong estimation (local) 44859180 44860493 43274936 43276248 NC_060933.1 NC_000009.12 99.92 True fake: scaffold gap size wrong estimation (local) 44860748 44865603 43276458 43281314 NC_060933.1 NC_000009.12 99.94 True fake: scaffold gap size wrong estimation (local) 44865930 44915135 43282967 43332174 NC_060933.1 NC_000009.12 99.97 True fake: scaffold gap size wrong estimation (local) 44916447 44954606 43333270 43370405 NC_060933.1 NC_000009.12 97.24 True fake: scaffold gap size wrong estimation (local) 44956190 44962298 43371336 43377444 NC_060933.1 NC_000009.12 98.94 True fake: scaffold gap size wrong estimation (local) 44967436 44973872 43382280 43388724 NC_060933.1 NC_000009.12 96.77 True relocation, inconsistency = 2355167 47329040 47329849 43388725 43389533 NC_060933.1 NC_000009.12 95.6 True relocation, scaffold gap is present, inconsistency = -1125062 46207273 46209966 43392019 43394712 NC_060933.1 NC_000009.12 95.51 True relocation, inconsistency = 61757 46271724 46279249 43394713 43402248 NC_060933.1 NC_000009.12 97.4 True relocation, inconsistency = 27219 46307137 46309702 43402917 43405482 NC_060933.1 NC_000009.12 96.61 True relocation, inconsistency = -605122 45704873 45707103 43405775 43408009 NC_060933.1 NC_000009.12 96.29 True relocation, inconsistency = 1674414 47381977 47384110 43408469 43410602 NC_060933.1 NC_000009.12 97.47 True relocation, inconsistency = -1712699 45671698 45675779 43410889 43414971 NC_060933.1 NC_000009.12 97.48 True relocation, inconsistency = 1193107 46868887 46871448 43414972 43417535 NC_060933.1 NC_000009.12 96.93 True indel: indel (> 5bp) 46871449 46872996 43417707 43419252 NC_060933.1 NC_000009.12 96.25 True relocation, inconsistency = -1411362 45461635 45463271 43419253 43420888 NC_060933.1 NC_000009.12 98.03 True relocation, inconsistency = -210273 45252999 45256441 43420889 43424335 NC_060933.1 NC_000009.12 97.04 True relocation, inconsistency = 2090348 47347089 47353019 43424635 43430562 NC_060933.1 NC_000009.12 96.33 True relocation, inconsistency = -1884332 45469172 45474721 43431047 43436602 NC_060933.1 NC_000009.12 96.31 True relocation, inconsistency = 866093 46340815 46341528 43436603 43437315 NC_060933.1 NC_000009.12 96.5 True relocation, inconsistency = 1197449 47539041 47540654 43437379 43438995 NC_060933.1 NC_000009.12 95.55 True local misassembly 47540655 47542210 43439679 43441234 NC_060933.1 NC_000009.12 97.81 True relocation, inconsistency = -839476 46704882 46706137 43443382 43444642 NC_060933.1 NC_000009.12 95.4 True relocation, inconsistency = 479598 47188411 47188934 43447318 43447841 NC_060933.1 NC_000009.12 99.47 True relocation, inconsistency = -1632241 45556694 45558779 43447842 43449928 NC_060933.1 NC_000009.12 97.22 True relocation, inconsistency = -214850 45344248 45346968 43450247 43452967 NC_060933.1 NC_000009.12 97.83 True relocation, inconsistency = 974289 46321598 46325863 43453308 43457573 NC_060933.1 NC_000009.12 96.23 True relocation, inconsistency = -1041145 45285190 45290320 43458045 43463177 NC_060933.1 NC_000009.12 97.8 True relocation, inconsistency = -127261 45163659 45165822 43463777 43465941 NC_060933.1 NC_000009.12 96.88 True relocation, inconsistency = 727790 45893613 45900234 43465942 43472560 NC_060933.1 NC_000009.12 98.17 True relocation, inconsistency = 107682 46007917 46009901 43472561 43474546 NC_060933.1 NC_000009.12 98.35 True relocation, inconsistency = -488600 45521302 45525090 43474547 43478335 NC_060933.1 NC_000009.12 98.87 True relocation, inconsistency = -453382 45072138 45075767 43478765 43482394 NC_060933.1 NC_000009.12 98.68 True relocation, inconsistency = 253676 45332089 45332651 43485040 43485602 NC_060933.1 NC_000009.12 98.22 True indel: indel (> 5bp) 45332652 45337109 43485774 43490230 NC_060933.1 NC_000009.12 97.96 True relocation, inconsistency = 827464 46165016 46169229 43490673 43494886 NC_060933.1 NC_000009.12 98.58 True relocation, inconsistency = -1083002 45086623 45094377 43495282 43503039 NC_060933.1 NC_000009.12 97.28 True local misassembly 45095060 45097510 43503040 43505490 NC_060933.1 NC_000009.12 97.92 True local misassembly 45098391 45105655 43507051 43514314 NC_060933.1 NC_000009.12 96.46 True relocation, inconsistency = 1378522 46484753 46488860 43514890 43518997 NC_060933.1 NC_000009.12 98.61 True relocation, inconsistency = -139335 46349526 46353092 43518998 43522566 NC_060933.1 NC_000009.12 98.62 True relocation, inconsistency = 1084619 47437712 47438819 43522567 43523674 NC_060933.1 NC_000009.12 96.23 True relocation, inconsistency = -1839695 45599125 45603464 43523675 43528018 NC_060933.1 NC_000009.12 97.51 True relocation, inconsistency = -510815 45092801 45100613 43528170 43536156 NC_060933.1 NC_000009.12 95.26 True relocation, inconsistency = 144105 45244719 45249921 43536157 43541359 NC_060933.1 NC_000009.12 98.04 True relocation, inconsistency = 1048967 46299108 46303723 43541579 43546195 NC_060933.1 NC_000009.12 97.16 True relocation, inconsistency = -284102 46019622 46022371 43546196 43548945 NC_060933.1 NC_000009.12 97.68 True relocation, inconsistency = 631847 46654545 46656401 43549272 43551129 NC_060933.1 NC_000009.12 97.36 True relocation, inconsistency = -427025 46229831 46231566 43551584 43553320 NC_060933.1 NC_000009.12 99.02 True relocation, inconsistency = -164337 46067230 46071573 43553321 43557670 NC_060933.1 NC_000009.12 96.55 True relocation, inconsistency = 379899 46451568 46458378 43557766 43564579 NC_060933.1 NC_000009.12 98.42 True relocation, inconsistency = -328522 46129857 46130762 43564580 43565485 NC_060933.1 NC_000009.12 99.23 True relocation, inconsistency = 151411 46282174 46289091 43565486 43572402 NC_060933.1 NC_000009.12 97.92 True relocation, inconsistency = -934985 45354107 45355668 43572403 43573965 NC_060933.1 NC_000009.12 98.65 True relocation, inconsistency = 1000836 46356959 46359136 43574420 43576597 NC_060933.1 NC_000009.12 97.18 True relocation, inconsistency = -202455 46156682 46161098 43576598 43581014 NC_060933.1 NC_000009.12 98.46 True relocation, inconsistency = 626439 46787711 46792659 43581188 43586136 NC_060933.1 NC_000009.12 98.34 True relocation, inconsistency = -1609060 45183600 45185421 43586137 43587958 NC_060933.1 NC_000009.12 98.0 True local misassembly 45186102 45191446 43587959 43593302 NC_060933.1 NC_000009.12 98.37 True fake: not a misassembly (possible transposable element) 45723919 45727335 43593983 43597399 NC_060933.1 NC_000009.12 97.19 True fake: not a misassembly (possible transposable element) 45193098 45196697 43597676 43601276 NC_060933.1 NC_000009.12 97.2 True relocation, inconsistency = 659055 45855753 45860732 43601277 43606256 NC_060933.1 NC_000009.12 98.25 True relocation, inconsistency = 216554 46077823 46083596 43606793 43612569 NC_060933.1 NC_000009.12 97.84 True relocation, inconsistency = 66858 46150455 46154045 43612570 43616161 NC_060933.1 NC_000009.12 97.6 True relocation, inconsistency = -568161 45585885 45588406 43616162 43618683 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = 1393487 46981894 46982685 43618684 43619476 NC_060933.1 NC_000009.12 97.72 True relocation, inconsistency = -1343180 45639506 45644255 43619477 43624227 NC_060933.1 NC_000009.12 96.59 True relocation, inconsistency = 1591565 47236034 47239953 43624441 43628360 NC_060933.1 NC_000009.12 97.5 True relocation, inconsistency = -444893 46795061 46795959 43628361 43629259 NC_060933.1 NC_000009.12 97.14 True relocation, inconsistency = -841804 45954308 45961993 43629412 43636925 NC_060933.1 NC_000009.12 96.37 True relocation, inconsistency = 911542 46873536 46874376 43636926 43637767 NC_060933.1 NC_000009.12 98.22 True relocation, inconsistency = -1159084 45715552 45722953 43638027 43645427 NC_060933.1 NC_000009.12 97.53 True relocation, inconsistency = 210284 45933238 45936414 43645428 43648605 NC_060933.1 NC_000009.12 96.11 True relocation, inconsistency = 126562 46062977 46065583 43648606 43651212 NC_060933.1 NC_000009.12 95.99 True relocation, inconsistency = 1474246 47539830 47540685 43651213 43652071 NC_060933.1 NC_000009.12 95.7 True relocation, inconsistency = -2435956 45105371 45110209 43652713 43657560 NC_060933.1 NC_000009.12 95.96 True relocation, inconsistency = 143937 45254793 45263392 43658207 43666802 NC_060933.1 NC_000009.12 98.01 True relocation, inconsistency = 2240962 47504571 47505618 43667019 43668066 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = -1793041 45714238 45719965 43669727 43675461 NC_060933.1 NC_000009.12 95.83 True indel: indel (> 5bp) 45719966 45721251 43675633 43676918 NC_060933.1 NC_000009.12 95.49 True relocation, inconsistency = -479058 45243708 45248152 43678433 43682877 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = 430746 45678899 45682810 43682878 43686789 NC_060933.1 NC_000009.12 97.8 True relocation, inconsistency = 1679512 47362609 47369638 43687076 43694108 NC_060933.1 NC_000009.12 98.25 True relocation, inconsistency = -1562466 45807255 45813606 43694191 43700540 NC_060933.1 NC_000009.12 97.21 True relocation, inconsistency = -288370 45525237 45528838 43700541 43704142 NC_060933.1 NC_000009.12 96.8 True relocation, inconsistency = 1865657 47394496 47397904 43704143 43707554 NC_060933.1 NC_000009.12 96.75 True relocation, inconsistency = -968408 46429777 46433863 43707835 43711921 NC_060933.1 NC_000009.12 97.69 True relocation, inconsistency = -749912 45683952 45689590 43711922 43717562 NC_060933.1 NC_000009.12 98.21 True relocation, inconsistency = 1601924 47291515 47292673 43717563 43718724 NC_060933.1 NC_000009.12 97.45 True relocation, inconsistency = -1400662 45892012 45899113 43718725 43725830 NC_060933.1 NC_000009.12 98.24 True relocation, inconsistency = 217917 46117226 46123300 43726026 43732100 NC_060933.1 NC_000009.12 97.35 True relocation, inconsistency = -19224 46104550 46111219 43732574 43739246 NC_060933.1 NC_000009.12 97.59 True relocation, inconsistency = -216893 45894327 45895396 43739247 43740316 NC_060933.1 NC_000009.12 97.3 True relocation, inconsistency = -558000 45337397 45344411 43740317 43747337 NC_060933.1 NC_000009.12 96.87 True relocation, inconsistency = -149198 45195214 45197319 43747338 43749444 NC_060933.1 NC_000009.12 97.0 True relocation, inconsistency = -213280 44984075 44986379 43749480 43751791 NC_060933.1 NC_000009.12 95.33 True relocation, inconsistency = 1404318 46390698 46392309 43751792 43753403 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = -1166699 45225611 45229410 43753404 43757205 NC_060933.1 NC_000009.12 97.66 True relocation, inconsistency = 1057810 46287825 46291286 43757810 43761271 NC_060933.1 NC_000009.12 97.57 True relocation, inconsistency = -79789 46211831 46220944 43761605 43770719 NC_060933.1 NC_000009.12 98.75 True relocation, inconsistency = -1101204 45119741 45121002 43770720 43771981 NC_060933.1 NC_000009.12 98.64 True relocation, inconsistency = 375473 45496476 45501969 43771982 43777481 NC_060933.1 NC_000009.12 97.47 True relocation, inconsistency = 1208254 46710224 46715294 43777482 43782555 NC_060933.1 NC_000009.12 98.29 True relocation, inconsistency = -1597500 45117797 45120322 43782558 43785083 NC_060933.1 NC_000009.12 96.09 True relocation, inconsistency = 1067525 46187848 46195387 43785084 43792623 NC_060933.1 NC_000009.12 98.16 True relocation, inconsistency = -1059355 45136033 45137891 43792624 43794482 NC_060933.1 NC_000009.12 97.73 True relocation, inconsistency = 1975195 47113088 47116277 43794484 43797675 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = -103450 47012828 47013739 43797676 43798588 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = 423984 47437894 47439393 43798759 43800259 NC_060933.1 NC_000009.12 96.4 True relocation, inconsistency = -1125795 46314784 46318811 43801445 43805475 NC_060933.1 NC_000009.12 97.26 True relocation, inconsistency = -12592 46306220 46310729 43805476 43809984 NC_060933.1 NC_000009.12 97.47 True relocation, inconsistency = -527716 45783014 45787413 43809985 43814384 NC_060933.1 NC_000009.12 97.87 True relocation, inconsistency = 335812 46123568 46128664 43814727 43819827 NC_060933.1 NC_000009.12 97.3 True relocation, inconsistency = -869994 45258671 45262414 43819828 43823575 NC_060933.1 NC_000009.12 97.36 True relocation, inconsistency = 757887 46020302 46022285 43823576 43825560 NC_060933.1 NC_000009.12 98.09 True relocation, inconsistency = -65828 45956458 45960580 43825561 43829683 NC_060933.1 NC_000009.12 98.13 True relocation, inconsistency = -488764 45471939 45479503 43829806 43837374 NC_060933.1 NC_000009.12 97.82 True relocation, inconsistency = 219281 45698785 45701531 43837375 43840120 NC_060933.1 NC_000009.12 97.38 True relocation, inconsistency = 417813 46119345 46120842 43840121 43841618 NC_060933.1 NC_000009.12 99.61 True relocation, inconsistency = -834606 45286237 45291093 43841619 43846478 NC_060933.1 NC_000009.12 98.58 True relocation, inconsistency = -164693 45126401 45126957 43846479 43847035 NC_060933.1 NC_000009.12 97.16 True relocation, inconsistency = 571451 45698409 45700821 43847036 43849451 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = 1341302 47042124 47047653 43849452 43854991 NC_060933.1 NC_000009.12 95.27 True relocation, inconsistency = -1878209 45169445 45172333 43854992 43857883 NC_060933.1 NC_000009.12 96.94 True relocation, inconsistency = 297207 45472150 45475818 43860493 43864163 NC_060933.1 NC_000009.12 97.5 True relocation, inconsistency = 14118 45489937 45496366 43864164 43870597 NC_060933.1 NC_000009.12 98.09 True relocation, inconsistency = 1374959 46872576 46874851 43871848 43874123 NC_060933.1 NC_000009.12 98.43 True relocation, inconsistency = -980956 45893896 45899376 43874124 43879607 NC_060933.1 NC_000009.12 98.43 True relocation, inconsistency = 963776 46863263 46869621 43879718 43886080 NC_060933.1 NC_000009.12 96.78 True relocation, inconsistency = -1381768 45487854 45490827 43886081 43889055 NC_060933.1 NC_000009.12 97.43 True relocation, inconsistency = 808416 46299244 46303723 43889056 43893535 NC_060933.1 NC_000009.12 98.39 True relocation, inconsistency = -756033 45547691 45549167 43893536 43895012 NC_060933.1 NC_000009.12 97.91 True relocation, inconsistency = 1092891 46642059 46647557 43895013 43900513 NC_060933.1 NC_000009.12 97.78 True relocation, inconsistency = -714522 45933382 45936107 43900860 43903586 NC_060933.1 NC_000009.12 98.54 True relocation, inconsistency = -379562 45556546 45564304 43903587 43911350 NC_060933.1 NC_000009.12 97.58 True relocation, inconsistency = 1802183 47366488 47371508 43911351 43916539 NC_060933.1 NC_000009.12 95.47 True relocation, inconsistency = -1520956 45850553 45852750 43916540 43918737 NC_060933.1 NC_000009.12 99.2 True relocation, inconsistency = 461198 46314110 46316014 43918899 43920803 NC_060933.1 NC_000009.12 98.9 True relocation, inconsistency = -1001675 45314629 45318042 43921093 43924508 NC_060933.1 NC_000009.12 97.16 True relocation, inconsistency = 654469 45972512 45975433 43924509 43927430 NC_060933.1 NC_000009.12 98.47 True relocation, inconsistency = 25166 46000803 46006194 43927634 43933029 NC_060933.1 NC_000009.12 96.68 True relocation, inconsistency = -405810 45600719 45606357 43933364 43939007 NC_060933.1 NC_000009.12 98.19 True relocation, inconsistency = -335573 45270785 45274137 43939008 43942363 NC_060933.1 NC_000009.12 96.94 True relocation, inconsistency = -48998 45225508 45228758 43942732 43945985 NC_060933.1 NC_000009.12 97.27 True relocation, inconsistency = 1762512 46991271 46992741 43945986 43947456 NC_060933.1 NC_000009.12 98.23 True local misassembly 46993422 46994613 43947457 43948648 NC_060933.1 NC_000009.12 95.39 True relocation, inconsistency = -1423305 45571373 45578497 43948713 43955782 NC_060933.1 NC_000009.12 97.57 True relocation, inconsistency = 1825454 47403952 47409136 43955783 43960967 NC_060933.1 NC_000009.12 98.7 True relocation, inconsistency = -423976 46986643 46988196 43962450 43964007 NC_060933.1 NC_000009.12 95.12 True fake: not a misassembly (possible transposable element) 45080208 45082749 43964346 43966887 NC_060933.1 NC_000009.12 97.92 True fake: not a misassembly (possible transposable element) 46994486 47001307 43967237 43974058 NC_060933.1 NC_000009.12 97.89 True relocation, inconsistency = -837059 46164249 46167322 43974059 43977132 NC_060933.1 NC_000009.12 98.39 True relocation, inconsistency = -576832 45590903 45596776 43977545 43983418 NC_060933.1 NC_000009.12 97.36 True relocation, inconsistency = 1880083 47476860 47478640 43983419 43985201 NC_060933.1 NC_000009.12 96.97 True relocation, inconsistency = -1775504 45703137 45706359 43985202 43988425 NC_060933.1 NC_000009.12 97.99 True relocation, inconsistency = -166221 45540139 45545561 43988426 43993849 NC_060933.1 NC_000009.12 97.83 True relocation, inconsistency = 189521 45735180 45736900 43993947 43995667 NC_060933.1 NC_000009.12 99.48 True relocation, inconsistency = -128330 45608956 45612797 43996053 43999895 NC_060933.1 NC_000009.12 97.19 True indel: indel (> 5bp) 45612798 45614435 44000067 44001704 NC_060933.1 NC_000009.12 97.04 True relocation, inconsistency = -35612 45578824 45583505 44001705 44006393 NC_060933.1 NC_000009.12 96.21 True relocation, inconsistency = -130685 45453126 45456868 44006699 44010441 NC_060933.1 NC_000009.12 97.01 True relocation, inconsistency = 1818144 47275013 47277869 44010442 44013301 NC_060933.1 NC_000009.12 97.36 True indel: indel (> 5bp) 47278040 47279812 44013302 44015074 NC_060933.1 NC_000009.12 96.39 True relocation, inconsistency = -1699875 45580593 45586206 44015730 44021348 NC_060933.1 NC_000009.12 96.76 True relocation, inconsistency = 1424783 47010990 47017345 44021349 44027704 NC_060933.1 NC_000009.12 98.46 True relocation, inconsistency = -172356 46844990 46848418 44027705 44031133 NC_060933.1 NC_000009.12 97.62 True relocation, inconsistency = -756400 46092019 46096280 44031134 44035400 NC_060933.1 NC_000009.12 99.5 True relocation, inconsistency = -787990 45308291 45314547 44035401 44041658 NC_060933.1 NC_000009.12 96.41 True relocation, inconsistency = 1990134 47304682 47306350 44041659 44043327 NC_060933.1 NC_000009.12 97.16 True relocation, inconsistency = -1646837 45659618 45664585 44043432 44048399 NC_060933.1 NC_000009.12 98.39 True relocation, inconsistency = 580793 46245379 46247710 44048400 44050731 NC_060933.1 NC_000009.12 98.04 True relocation, inconsistency = -1121619 45126313 45128149 44050953 44052789 NC_060933.1 NC_000009.12 99.47 True relocation, inconsistency = 75205 45203355 45209941 44052790 44059376 NC_060933.1 NC_000009.12 98.33 True relocation, inconsistency = 2195851 47406182 47408617 44059766 44062200 NC_060933.1 NC_000009.12 97.29 True relocation, inconsistency = -937785 46472426 46475762 44063794 44067131 NC_060933.1 NC_000009.12 98.38 True relocation, inconsistency = -221177 46254714 46258846 44067260 44071393 NC_060933.1 NC_000009.12 97.53 True relocation, inconsistency = 754722 47013985 47017248 44071810 44075076 NC_060933.1 NC_000009.12 98.28 True relocation, inconsistency = -1711646 45305603 45310243 44075077 44079720 NC_060933.1 NC_000009.12 98.0 True relocation, inconsistency = 2087818 47398063 47399427 44079722 44081086 NC_060933.1 NC_000009.12 99.41 True relocation, inconsistency = -1696032 45704329 45707103 44082020 44084795 NC_060933.1 NC_000009.12 96.47 True fake: not a misassembly (possible transposable element) 45795720 45798824 44085118 44088221 NC_060933.1 NC_000009.12 98.65 True fake: not a misassembly (possible transposable element) 45711378 45720741 44088222 44097592 NC_060933.1 NC_000009.12 96.99 True local misassembly 45721521 45727509 44098204 44104193 NC_060933.1 NC_000009.12 96.88 True local misassembly 45729839 45733616 44104820 44108600 NC_060933.1 NC_000009.12 97.55 True local misassembly 45734809 45740102 44108601 44114066 NC_060933.1 NC_000009.12 95.15 True relocation, inconsistency = -410659 45329444 45331182 44114067 44115806 NC_060933.1 NC_000009.12 97.31 True relocation, inconsistency = 1065135 46396318 46397664 44115807 44117155 NC_060933.1 NC_000009.12 97.71 True relocation, inconsistency = -650731 45748247 45749959 44118469 44120181 NC_060933.1 NC_000009.12 97.84 True indel: indel (> 5bp) 45749960 45751631 44120351 44122022 NC_060933.1 NC_000009.12 98.53 True relocation, inconsistency = 1399671 47151303 47153400 44122023 44124119 NC_060933.1 NC_000009.12 97.26 True relocation, inconsistency = -786024 46367377 46371920 44124120 44128663 NC_060933.1 NC_000009.12 98.4 True relocation, inconsistency = 621501 46993422 47001104 44128664 44136350 NC_060933.1 NC_000009.12 97.36 True relocation, inconsistency = 99713 47100818 47103454 44136351 44138987 NC_060933.1 NC_000009.12 97.33 True relocation, inconsistency = -1310692 45792763 45796283 44138988 44142508 NC_060933.1 NC_000009.12 97.22 True relocation, inconsistency = -570925 45225359 45228570 44142509 44145722 NC_060933.1 NC_000009.12 98.75 True relocation, inconsistency = 2115011 47343582 47348342 44145723 44150486 NC_060933.1 NC_000009.12 96.41 True relocation, inconsistency = -1373785 45974558 45975560 44150487 44151489 NC_060933.1 NC_000009.12 95.91 True indel: indel (> 5bp) 45975561 45976735 44151658 44152832 NC_060933.1 NC_000009.12 96.85 True relocation, inconsistency = -80647 45897116 45899155 44153860 44155899 NC_060933.1 NC_000009.12 96.51 True relocation, inconsistency = 1527616 47426772 47429096 44155900 44158227 NC_060933.1 NC_000009.12 96.89 True relocation, inconsistency = -2384030 45045067 45049875 44158228 44163046 NC_060933.1 NC_000009.12 95.69 True relocation, inconsistency = 736828 45786704 45794825 44163047 44171177 NC_060933.1 NC_000009.12 97.33 True relocation, inconsistency = 11908 45807009 45811383 44171453 44175830 NC_060933.1 NC_000009.12 96.62 True indel: indel (> 5bp) 45811384 45816487 44175999 44181103 NC_060933.1 NC_000009.12 97.55 True indel: indel (> 5bp) 45816488 45819088 44181272 44183874 NC_060933.1 NC_000009.12 97.85 True indel: indel (> 5bp) 45819089 45821640 44184046 44186597 NC_060933.1 NC_000009.12 97.02 True relocation, inconsistency = -507132 45315426 45318421 44187515 44190510 NC_060933.1 NC_000009.12 97.1 True relocation, inconsistency = 1661296 46980134 46980821 44190927 44191614 NC_060933.1 NC_000009.12 97.67 True relocation, inconsistency = -1153827 45827907 45829926 44192527 44194546 NC_060933.1 NC_000009.12 98.22 True indel: indel (> 5bp) 45829927 45832501 44194715 44197290 NC_060933.1 NC_000009.12 95.11 True local misassembly 45833011 45834399 44197291 44198679 NC_060933.1 NC_000009.12 96.69 True indel: indel (> 5bp) 45834400 45836790 44198851 44201241 NC_060933.1 NC_000009.12 97.78 True relocation, inconsistency = 1590222 47427013 47428519 44201242 44202748 NC_060933.1 NC_000009.12 98.71 True relocation, inconsistency = 92918 47521438 47522244 44202749 44203555 NC_060933.1 NC_000009.12 98.35 True relocation, inconsistency = -157084 47365161 47368583 44203556 44206980 NC_060933.1 NC_000009.12 97.05 True relocation, inconsistency = -1897945 45470642 45471617 44206984 44207959 NC_060933.1 NC_000009.12 98.77 True local misassembly 45471618 45473533 44208302 44210218 NC_060933.1 NC_000009.12 98.02 True relocation, inconsistency = 587085 46060619 46062501 44210219 44212101 NC_060933.1 NC_000009.12 99.16 True indel: indel (> 5bp) 46062672 46063485 44212102 44212915 NC_060933.1 NC_000009.12 97.61 True relocation, inconsistency = 200574 46264060 46266488 44212916 44215347 NC_060933.1 NC_000009.12 98.23 True relocation, inconsistency = -149030 46117459 46118835 44215348 44216724 NC_060933.1 NC_000009.12 95.8 True indel: indel (> 5bp) 46118836 46121210 44216896 44219271 NC_060933.1 NC_000009.12 98.15 True relocation, inconsistency = -297875 45823336 45824191 44219272 44220128 NC_060933.1 NC_000009.12 97.14 True relocation, inconsistency = 1491507 47318026 47319752 44222456 44224182 NC_060933.1 NC_000009.12 98.15 True relocation, inconsistency = -1428228 45894020 45898527 44226678 44231186 NC_060933.1 NC_000009.12 97.39 True relocation, inconsistency = 1414778 47314075 47315043 44231956 44232924 NC_060933.1 NC_000009.12 97.73 True relocation, inconsistency = -2319632 45002142 45003621 44239655 44241134 NC_060933.1 NC_000009.12 98.31 True relocation, inconsistency = 456241 45461913 45465522 44243185 44246795 NC_060933.1 NC_000009.12 97.07 True relocation, inconsistency = 674865 46140388 46142483 44246796 44248891 NC_060933.1 NC_000009.12 97.13 True relocation, inconsistency = -1143004 44999480 45000659 44248892 44250074 NC_060933.1 NC_000009.12 95.54 True relocation, inconsistency = 714457 45718341 45723431 44253299 44258391 NC_060933.1 NC_000009.12 96.31 True relocation, inconsistency = 1138845 46862626 46863824 44258741 44259939 NC_060933.1 NC_000009.12 98.08 True relocation, inconsistency = 671909 47537188 47538602 44261394 44262808 NC_060933.1 NC_000009.12 97.1 True relocation, inconsistency = -756452 46782777 46786265 44263435 44266923 NC_060933.1 NC_000009.12 97.11 True relocation, inconsistency = -1077427 45708839 45710110 44266924 44268195 NC_060933.1 NC_000009.12 97.07 True indel: indel (> 5bp) 45710111 45712184 44268368 44270443 NC_060933.1 NC_000009.12 97.49 True relocation, inconsistency = 1164698 46876883 46880685 44270444 44274249 NC_060933.1 NC_000009.12 97.69 True relocation, inconsistency = -579306 46301796 46303855 44274666 44276726 NC_060933.1 NC_000009.12 98.69 True relocation, inconsistency = 350638 46654520 46656031 44276753 44278264 NC_060933.1 NC_000009.12 97.49 True relocation, inconsistency = 207234 46863266 46867926 44278265 44282933 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = -1369186 45500080 45505167 44284273 44289370 NC_060933.1 NC_000009.12 97.14 True relocation, inconsistency = 1459880 46965048 46966087 44289371 44290410 NC_060933.1 NC_000009.12 98.28 True relocation, inconsistency = -831450 46134638 46138872 44290411 44294645 NC_060933.1 NC_000009.12 98.91 True relocation, inconsistency = 1390203 47529076 47532006 44294646 44297577 NC_060933.1 NC_000009.12 96.91 True relocation, inconsistency = -403253 47128754 47130769 44297578 44299591 NC_060933.1 NC_000009.12 96.23 True relocation, inconsistency = -552275 46578495 46580564 44299592 44301662 NC_060933.1 NC_000009.12 96.76 True relocation, inconsistency = -625039 45957002 45958714 44303139 44304851 NC_060933.1 NC_000009.12 96.15 True indel: indel (> 5bp) 45958715 45960628 44305020 44306933 NC_060933.1 NC_000009.12 95.72 True indel: indel (> 5bp) 45960799 45961425 44306934 44307560 NC_060933.1 NC_000009.12 97.61 True indel: indel (> 5bp) 45961597 45962276 44307561 44308240 NC_060933.1 NC_000009.12 98.38 True relocation, inconsistency = 770515 46732966 46738934 44308415 44314382 NC_060933.1 NC_000009.12 96.08 True relocation, inconsistency = -1137883 45601052 45603604 44314383 44316936 NC_060933.1 NC_000009.12 98.81 True relocation, inconsistency = 1773324 47376929 47378400 44316937 44318411 NC_060933.1 NC_000009.12 98.07 True relocation, inconsistency = -2008697 45369704 45372311 44318412 44321019 NC_060933.1 NC_000009.12 96.06 True relocation, inconsistency = -310838 45062138 45065028 44321684 44324573 NC_060933.1 NC_000009.12 96.82 True relocation, inconsistency = 1911740 46976769 46977917 44324574 44325722 NC_060933.1 NC_000009.12 97.35 True relocation, inconsistency = -1723047 45254871 45257847 44325723 44328702 NC_060933.1 NC_000009.12 96.88 True local misassembly 45255128 45257857 44328706 44331442 NC_060933.1 NC_000009.12 95.73 True relocation, inconsistency = 711798 45970072 45972328 44331859 44334115 NC_060933.1 NC_000009.12 95.44 True indel: indel (> 5bp) 45972329 45973983 44334284 44335938 NC_060933.1 NC_000009.12 96.56 True relocation, inconsistency = 512919 46486903 46490308 44335939 44339349 NC_060933.1 NC_000009.12 97.45 True relocation, inconsistency = 978300 47468609 47472430 44339350 44343169 NC_060933.1 NC_000009.12 95.97 True relocation, inconsistency = -2376381 45096050 45098173 44343170 44345293 NC_060933.1 NC_000009.12 96.69 True relocation, inconsistency = 895965 45994139 45996444 44345294 44347600 NC_060933.1 NC_000009.12 99.22 True indel: indel (> 5bp) 45996445 45998678 44347772 44350006 NC_060933.1 NC_000009.12 96.64 True relocation, inconsistency = -38872 45965343 45966055 44355543 44356255 NC_060933.1 NC_000009.12 98.46 True local misassembly 45966565 45967954 44356256 44357645 NC_060933.1 NC_000009.12 98.78 True indel: indel (> 5bp) 45967955 45969559 44357817 44359424 NC_060933.1 NC_000009.12 96.11 True relocation, inconsistency = -813538 45156022 45157108 44359425 44360511 NC_060933.1 NC_000009.12 97.94 True relocation, inconsistency = 857248 46014357 46017861 44360512 44364016 NC_060933.1 NC_000009.12 98.78 True local misassembly 46012590 46017099 44364017 44368529 NC_060933.1 NC_000009.12 96.3 True relocation, inconsistency = -775583 45241619 45244847 44368632 44371861 NC_060933.1 NC_000009.12 97.62 True relocation, inconsistency = 1133703 46378551 46382880 44371862 44376194 NC_060933.1 NC_000009.12 95.39 True relocation, inconsistency = 474835 46857716 46859069 44376195 44377548 NC_060933.1 NC_000009.12 95.06 True indel: indel (> 5bp) 46859241 46860770 44377549 44379078 NC_060933.1 NC_000009.12 97.65 True relocation, inconsistency = -1611599 45250311 45254448 44380218 44384356 NC_060933.1 NC_000009.12 97.22 True relocation, inconsistency = 1408287 46662736 46663757 44384357 44385378 NC_060933.1 NC_000009.12 95.24 True relocation, inconsistency = 723418 47387630 47389064 44385833 44387266 NC_060933.1 NC_000009.12 98.26 True relocation, inconsistency = -636804 46752664 46754703 44387670 44389712 NC_060933.1 NC_000009.12 97.94 True relocation, inconsistency = -1258092 45496612 45499215 44389713 44392320 NC_060933.1 NC_000009.12 96.93 True relocation, inconsistency = -500106 44999111 45000659 44392322 44393878 NC_060933.1 NC_000009.12 96.66 True relocation, inconsistency = 730283 45730943 45732145 44393879 44395081 NC_060933.1 NC_000009.12 99.67 True relocation, inconsistency = 1457348 47189500 47191697 44395088 44397287 NC_060933.1 NC_000009.12 95.45 True relocation, inconsistency = -210456 46981242 46982549 44397288 44398596 NC_060933.1 NC_000009.12 98.06 True relocation, inconsistency = -921955 46060595 46062474 44398597 44400476 NC_060933.1 NC_000009.12 98.09 True indel: indel (> 5bp) 46062646 46063838 44400477 44401669 NC_060933.1 NC_000009.12 97.74 True indel: indel (> 5bp) 46063839 46066061 44401838 44404059 NC_060933.1 NC_000009.12 98.25 True relocation, inconsistency = 1309675 47375737 47376618 44404060 44404941 NC_060933.1 NC_000009.12 98.21 True relocation, inconsistency = -1295044 46082029 46084068 44405396 44407435 NC_060933.1 NC_000009.12 98.9 True relocation, inconsistency = -977183 45106886 45110511 44407436 44411063 NC_060933.1 NC_000009.12 98.46 True relocation, inconsistency = 17522 45128034 45129585 44411064 44412615 NC_060933.1 NC_000009.12 97.98 True relocation, inconsistency = -113273 45016313 45017594 44412616 44413897 NC_060933.1 NC_000009.12 97.63 True relocation, inconsistency = 1700740 46718335 46719014 44413898 44414577 NC_060933.1 NC_000009.12 98.98 True relocation, inconsistency = 117383 46836398 46841468 44414578 44419648 NC_060933.1 NC_000009.12 98.15 True relocation, inconsistency = -995081 45847269 45849015 44420530 44422276 NC_060933.1 NC_000009.12 98.74 True relocation, inconsistency = 1557382 47407527 47408959 44423406 44424838 NC_060933.1 NC_000009.12 97.56 True relocation, inconsistency = -399143 47010753 47011976 44425775 44426999 NC_060933.1 NC_000009.12 96.86 True relocation, inconsistency = -1919891 45092086 45095888 44427000 44430802 NC_060933.1 NC_000009.12 97.08 True relocation, inconsistency = 797715 45894020 45896040 44431219 44433239 NC_060933.1 NC_000009.12 96.35 True relocation, inconsistency = 1114693 47010734 47015851 44433240 44438356 NC_060933.1 NC_000009.12 95.84 True relocation, inconsistency = 198367 47214219 47214819 44438357 44438957 NC_060933.1 NC_000009.12 98.11 True relocation, inconsistency = -1681389 45534264 45535043 44439791 44440566 NC_060933.1 NC_000009.12 97.02 True relocation, inconsistency = 925832 46460876 46464542 44440567 44444233 NC_060933.1 NC_000009.12 98.39 True relocation, inconsistency = 666763 47131306 47133730 44444234 44446659 NC_060933.1 NC_000009.12 97.96 True relocation, inconsistency = -1643443 45490288 45494317 44446660 44450693 NC_060933.1 NC_000009.12 95.61 True relocation, inconsistency = 576537 46070855 46071678 44450694 44451517 NC_060933.1 NC_000009.12 97.67 True indel: indel (> 5bp) 46071679 46074207 44451690 44454218 NC_060933.1 NC_000009.12 95.1 True relocation, inconsistency = 298241 46372782 46375047 44454552 44456817 NC_060933.1 NC_000009.12 95.72 True relocation, inconsistency = -1184736 45190624 45193158 44457130 44459664 NC_060933.1 NC_000009.12 98.58 True relocation, inconsistency = 1820363 47013707 47017248 44459850 44463392 NC_060933.1 NC_000009.12 96.8 True relocation, inconsistency = -69746 46947503 46951846 44463393 44467739 NC_060933.1 NC_000009.12 96.48 True relocation, inconsistency = 409663 47361820 47363288 44468050 44469520 NC_060933.1 NC_000009.12 97.31 True relocation, inconsistency = -1963100 45400189 45403311 44469521 44472643 NC_060933.1 NC_000009.12 96.74 True relocation, inconsistency = 1842319 47245911 47247406 44472924 44474419 NC_060933.1 NC_000009.12 96.03 True relocation, inconsistency = -1353387 45894020 45896829 44474420 44477232 NC_060933.1 NC_000009.12 97.16 True relocation, inconsistency = 1598749 47495579 47497224 44477233 44478878 NC_060933.1 NC_000009.12 97.61 True relocation, inconsistency = -1982387 45514838 45518575 44478879 44482622 NC_060933.1 NC_000009.12 95.7 True relocation, inconsistency = 628778 46148208 46150650 44483477 44485919 NC_060933.1 NC_000009.12 96.4 True local misassembly 46150651 46152979 44486433 44488763 NC_060933.1 NC_000009.12 95.75 True local misassembly 46153492 46155294 44488764 44490567 NC_060933.1 NC_000009.12 97.62 True local misassembly 46155295 46156211 44490910 44491826 NC_060933.1 NC_000009.12 98.8 True local misassembly 46156724 46158936 44491827 44494040 NC_060933.1 NC_000009.12 95.08 True indel: indel (> 5bp) 46158937 46161337 44494209 44496609 NC_060933.1 NC_000009.12 97.13 True local misassembly 46161850 46164391 44496610 44499151 NC_060933.1 NC_000009.12 96.11 True local misassembly 46164881 46167431 44499809 44502361 NC_060933.1 NC_000009.12 97.38 True indel: indel (> 5bp) 46167432 46169017 44502535 44504121 NC_060933.1 NC_000009.12 98.93 True relocation, inconsistency = -510195 45659459 45659990 44504758 44505292 NC_060933.1 NC_000009.12 95.42 True relocation, inconsistency = 390090 46050081 46052652 44505293 44507865 NC_060933.1 NC_000009.12 96.0 True relocation, inconsistency = 92549 46145775 46146335 44508439 44509001 NC_060933.1 NC_000009.12 96.1 True relocation, inconsistency = 56650 46202986 46205025 44509002 44511041 NC_060933.1 NC_000009.12 97.04 True relocation, inconsistency = -1098140 45106886 45110171 44511042 44514329 NC_060933.1 NC_000009.12 97.14 True relocation, inconsistency = 61424 45171710 45173351 44514444 44516085 NC_060933.1 NC_000009.12 98.23 True relocation, inconsistency = 1010866 46185154 46187526 44517022 44519397 NC_060933.1 NC_000009.12 97.81 True relocation, inconsistency = -761291 45427086 45431372 44520248 44524534 NC_060933.1 NC_000009.12 95.78 True fake: not a misassembly (possible transposable element) 47568914 47571635 44524535 44527260 NC_060933.1 NC_000009.12 95.7 True fake: not a misassembly (possible transposable element) 45439151 45440510 44531793 44533152 NC_060933.1 NC_000009.12 96.71 True relocation, inconsistency = 762475 46202986 46205424 44533153 44535594 NC_060933.1 NC_000009.12 98.89 True indel: indel (> 5bp) 46205425 46207120 44535766 44537461 NC_060933.1 NC_000009.12 97.82 True local misassembly 46211967 46214872 44542309 44545218 NC_060933.1 NC_000009.12 97.08 True fake: not a misassembly (possible transposable element) 47565636 47567671 44548133 44550172 NC_060933.1 NC_000009.12 96.37 True fake: not a misassembly (possible transposable element) 46220167 46222553 44550173 44552560 NC_060933.1 NC_000009.12 97.95 True relocation, inconsistency = -514782 45708472 45713518 44553261 44558310 NC_060933.1 NC_000009.12 95.79 True relocation, inconsistency = 1692637 47406156 47407087 44558311 44559244 NC_060933.1 NC_000009.12 96.1 True relocation, inconsistency = -1150800 46256557 46258443 44559514 44561402 NC_060933.1 NC_000009.12 98.04 True relocation, inconsistency = 26032 46284476 46286741 44561403 44563671 NC_060933.1 NC_000009.12 98.02 True relocation, inconsistency = -183563 46104313 46106754 44564806 44567248 NC_060933.1 NC_000009.12 98.28 True relocation, inconsistency = -636926 45470110 45473393 44567530 44570814 NC_060933.1 NC_000009.12 98.3 True relocation, inconsistency = 813518 46286912 46288523 44570815 44572425 NC_060933.1 NC_000009.12 96.93 True relocation, inconsistency = -568380 45720144 45723431 44572426 44575713 NC_060933.1 NC_000009.12 96.32 True relocation, inconsistency = 1848514 47571946 47573502 44575714 44577274 NC_060933.1 NC_000009.12 97.41 True relocation, inconsistency = -750320 46823439 46827946 44577531 44582039 NC_060933.1 NC_000009.12 95.46 True relocation, inconsistency = 9696 46838270 46843375 44582667 44587770 NC_060933.1 NC_000009.12 95.6 True relocation, inconsistency = -1324959 45518417 45520335 44587771 44589690 NC_060933.1 NC_000009.12 97.42 True relocation, inconsistency = -496574 45025053 45027778 44590982 44593708 NC_060933.1 NC_000009.12 96.63 True relocation, inconsistency = 487734 45516265 45520163 44594461 44598354 NC_060933.1 NC_000009.12 97.23 True relocation, inconsistency = 1886072 47406236 47407264 44598355 44599383 NC_060933.1 NC_000009.12 96.44 True relocation, inconsistency = -195839 47211888 47212717 44599846 44600675 NC_060933.1 NC_000009.12 95.78 True indel: indel (> 5bp) 47212888 47214255 44600676 44602046 NC_060933.1 NC_000009.12 96.3 True relocation, inconsistency = -1490337 45723919 45727318 44602047 44605446 NC_060933.1 NC_000009.12 96.47 True relocation, inconsistency = 172349 45899668 45903191 44605447 44608969 NC_060933.1 NC_000009.12 97.45 True relocation, inconsistency = -76725 45826467 45827424 44608970 44609926 NC_060933.1 NC_000009.12 97.29 True relocation, inconsistency = 1010565 46838270 46841218 44610207 44613153 NC_060933.1 NC_000009.12 95.83 True relocation, inconsistency = -1859417 44981802 44983397 44613154 44614752 NC_060933.1 NC_000009.12 96.55 True relocation, inconsistency = 1503156 46486903 46490569 44615102 44618769 NC_060933.1 NC_000009.12 97.33 True relocation, inconsistency = -181709 46311046 46312069 44620955 44621978 NC_060933.1 NC_000009.12 99.22 True relocation, inconsistency = 553613 46865683 46867925 44621979 44624222 NC_060933.1 NC_000009.12 98.26 True relocation, inconsistency = -1892077 44976947 44977626 44625321 44626000 NC_060933.1 NC_000009.12 96.21 True local misassembly 44973206 44976310 44626001 44629106 NC_060933.1 NC_000009.12 97.26 True relocation, inconsistency = 2212291 47190441 47191816 44630946 44632321 NC_060933.1 NC_000009.12 96.73 True relocation, inconsistency = -1667113 45525071 45529002 44632689 44636624 NC_060933.1 NC_000009.12 98.3 True relocation, inconsistency = 1127081 46656084 46657963 44636625 44638505 NC_060933.1 NC_000009.12 96.75 True fake: not a misassembly (possible transposable element) 47418961 47420189 44640002 44641230 NC_060933.1 NC_000009.12 95.61 True fake: not a misassembly (possible transposable element) 46654590 46657193 44641257 44643860 NC_060933.1 NC_000009.12 97.69 True relocation, inconsistency = -1342439 45314755 45318042 44643861 44647149 NC_060933.1 NC_000009.12 96.2 True relocation, inconsistency = -193101 45124942 45126957 44647150 44649165 NC_060933.1 NC_000009.12 98.9 True relocation, inconsistency = 115697 45242655 45245374 44649166 44651885 NC_060933.1 NC_000009.12 97.78 True relocation, inconsistency = 664501 45909876 45914181 44651886 44656190 NC_060933.1 NC_000009.12 97.79 True relocation, inconsistency = -579944 45334238 45335044 44656191 44656997 NC_060933.1 NC_000009.12 95.31 True indel: indel (> 5bp) 45335045 45338314 44657166 44660438 NC_060933.1 NC_000009.12 95.42 True relocation, inconsistency = 2005285 47343600 47344939 44660439 44661778 NC_060933.1 NC_000009.12 98.21 True indel: indel (> 5bp) 47345111 47346440 44661779 44663108 NC_060933.1 NC_000009.12 98.15 True relocation, inconsistency = 106371 47452812 47454225 44663109 44664522 NC_060933.1 NC_000009.12 97.95 True relocation, inconsistency = -1146900 46309352 46310675 44666549 44667872 NC_060933.1 NC_000009.12 97.68 True relocation, inconsistency = -74005 46236671 46238936 44667873 44670138 NC_060933.1 NC_000009.12 98.85 True relocation, inconsistency = 1179548 47422530 47423933 44674184 44675587 NC_060933.1 NC_000009.12 96.44 True relocation, inconsistency = -1866856 45557194 45559257 44675704 44677767 NC_060933.1 NC_000009.12 97.53 True relocation, inconsistency = -561347 45000135 45000827 44679992 44680684 NC_060933.1 NC_000009.12 96.1 True relocation, inconsistency = 114609 45117091 45119154 44682339 44684401 NC_060933.1 NC_000009.12 98.55 True relocation, inconsistency = 1235787 46357095 46358318 44686555 44687778 NC_060933.1 NC_000009.12 96.63 True relocation, inconsistency = -852663 45505656 45509758 44687779 44691882 NC_060933.1 NC_000009.12 97.03 True relocation, inconsistency = -193076 45316683 45318070 44691883 44693275 NC_060933.1 NC_000009.12 96.03 True relocation, inconsistency = 1816119 47134818 47136910 44693904 44695997 NC_060933.1 NC_000009.12 96.85 True relocation, inconsistency = -757268 46383020 46387291 44699375 44703646 NC_060933.1 NC_000009.12 97.28 True relocation, inconsistency = -842123 45547529 45549557 44706007 44708035 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = 1580007 47129565 47134359 44708036 44712831 NC_060933.1 NC_000009.12 95.0 True relocation, inconsistency = -1297924 45837062 45839101 44713458 44715500 NC_060933.1 NC_000009.12 96.32 True relocation, inconsistency = 644433 46483535 46486306 44715501 44718272 NC_060933.1 NC_000009.12 96.75 True relocation, inconsistency = 932349 47418656 47419283 44718273 44718900 NC_060933.1 NC_000009.12 98.3 True relocation, inconsistency = -173373 47245911 47247994 44718901 44720986 NC_060933.1 NC_000009.12 95.88 True relocation, inconsistency = 292845 47540913 47542558 44721060 44722705 NC_060933.1 NC_000009.12 98.66 True relocation, inconsistency = -428772 47114236 47116136 44723155 44725057 NC_060933.1 NC_000009.12 97.64 True relocation, inconsistency = -1669126 45447661 45451792 44725708 44729839 NC_060933.1 NC_000009.12 96.32 True relocation, inconsistency = 1017336 46469129 46471848 44729840 44732559 NC_060933.1 NC_000009.12 97.12 True relocation, inconsistency = -1344327 45127522 45129735 44732560 44734773 NC_060933.1 NC_000009.12 98.54 True relocation, inconsistency = 1254837 46385863 46387472 44736064 44737676 NC_060933.1 NC_000009.12 95.04 True indel: indel (> 5bp) 46387473 46391377 44737848 44741753 NC_060933.1 NC_000009.12 96.49 True relocation, inconsistency = -224062 46167316 46169847 44741754 44744285 NC_060933.1 NC_000009.12 98.08 True relocation, inconsistency = 1038488 47208337 47210356 44744287 44746304 NC_060933.1 NC_000009.12 96.04 True relocation, inconsistency = -1422961 45787396 45789819 44746305 44748728 NC_060933.1 NC_000009.12 97.98 True relocation, inconsistency = 1038805 46830135 46832349 44750239 44752456 NC_060933.1 NC_000009.12 96.56 True relocation, inconsistency = -679685 46152665 46156085 44752457 44755875 NC_060933.1 NC_000009.12 97.63 True relocation, inconsistency = -1076027 45080543 45082761 44756360 44758579 NC_060933.1 NC_000009.12 96.07 True relocation, inconsistency = 1571612 46654374 46657087 44758580 44761293 NC_060933.1 NC_000009.12 95.06 True relocation, inconsistency = -1653737 45003865 45006748 44761808 44764695 NC_060933.1 NC_000009.12 96.02 True relocation, inconsistency = 573161 45580560 45582332 44765346 44767118 NC_060933.1 NC_000009.12 98.59 True relocation, inconsistency = 847177 46429637 46433523 44767246 44771132 NC_060933.1 NC_000009.12 97.4 True relocation, inconsistency = 817156 47250680 47251548 44771133 44772001 NC_060933.1 NC_000009.12 97.47 True relocation, inconsistency = -225594 47025955 47028188 44772002 44774236 NC_060933.1 NC_000009.12 97.67 True relocation, inconsistency = -1921251 45106938 45108245 44774237 44775544 NC_060933.1 NC_000009.12 99.04 True indel: indel (> 5bp) 45108246 45109338 44775716 44776808 NC_060933.1 NC_000009.12 97.9 True relocation, inconsistency = 240565 45350307 45351584 44777212 44778490 NC_060933.1 NC_000009.12 98.98 True relocation, inconsistency = -371318 44981573 44983397 44779797 44781625 NC_060933.1 NC_000009.12 97.1 True relocation, inconsistency = 2188634 47172032 47172954 44781626 44782548 NC_060933.1 NC_000009.12 95.35 True relocation, inconsistency = -1480980 45693985 45694664 44784559 44785238 NC_060933.1 NC_000009.12 98.13 True local misassembly 45698409 45701392 44785239 44788223 NC_060933.1 NC_000009.12 95.01 True relocation, inconsistency = 1820260 47523436 47526213 44790007 44792784 NC_060933.1 NC_000009.12 97.41 True relocation, inconsistency = 43384 47570599 47571485 44793786 44794672 NC_060933.1 NC_000009.12 98.31 True relocation, inconsistency = -1863985 45708105 45713596 44795277 44800773 NC_060933.1 NC_000009.12 95.07 True relocation, inconsistency = 1188521 46903088 46905320 44801744 44803977 NC_060933.1 NC_000009.12 96.69 True local misassembly 46906513 46907224 44804829 44805543 NC_060933.1 NC_000009.12 96.08 True relocation, inconsistency = -1189201 45718095 45723274 44805615 44810793 NC_060933.1 NC_000009.12 95.95 True relocation, inconsistency = 659582 46383226 46387123 44811163 44815062 NC_060933.1 NC_000009.12 95.95 True relocation, inconsistency = 465311 46852435 46853196 44815063 44815824 NC_060933.1 NC_000009.12 97.27 True relocation, inconsistency = 721921 47575118 47576543 44815825 44817250 NC_060933.1 NC_000009.12 96.28 True relocation, inconsistency = -1043135 46533409 46537127 44817251 44820969 NC_060933.1 NC_000009.12 97.93 True relocation, inconsistency = 200603 46737731 46738969 44820970 44822208 NC_060933.1 NC_000009.12 97.63 True relocation, inconsistency = -351842 46387718 46390648 44822799 44825732 NC_060933.1 NC_000009.12 95.71 True relocation, inconsistency = -1289880 45101102 45103165 44826066 44828129 NC_060933.1 NC_000009.12 97.63 True relocation, inconsistency = -78920 45024902 45027837 44828786 44831727 NC_060933.1 NC_000009.12 95.48 True relocation, inconsistency = 709064 45737217 45738038 44832043 44832864 NC_060933.1 NC_000009.12 97.73 True relocation, inconsistency = -23983 45714056 45717479 44832865 44836286 NC_060933.1 NC_000009.12 96.14 True relocation, scaffold gap is present, inconsistency = 839130 46577963 46580185 44857640 44859863 NC_060933.1 NC_000009.12 95.01 True relocation, inconsistency = 390820 46972377 46972876 44861235 44861734 NC_060933.1 NC_000009.12 97.34 True relocation, inconsistency = -909021 46063856 46064813 44861735 44862692 NC_060933.1 NC_000009.12 96.27 True relocation, inconsistency = -530450 45534364 45536947 44862693 44865276 NC_060933.1 NC_000009.12 97.23 True relocation, inconsistency = -226241 45310707 45314160 44865277 44868731 NC_060933.1 NC_000009.12 96.61 True relocation, inconsistency = -40996 45273165 45274137 44868732 44869704 NC_060933.1 NC_000009.12 98.01 True relocation, inconsistency = 1718452 46995099 46997682 44872214 44874798 NC_060933.1 NC_000009.12 95.98 True relocation, inconsistency = -1523661 45474022 45479519 44874799 44880295 NC_060933.1 NC_000009.12 97.56 True relocation, inconsistency = 683714 46163234 46164714 44880296 44881776 NC_060933.1 NC_000009.12 96.51 True relocation, inconsistency = -877477 45289611 45292677 44884150 44887216 NC_060933.1 NC_000009.12 95.86 True relocation, inconsistency = 1983679 47277908 47279461 44888768 44890322 NC_060933.1 NC_000009.12 97.11 True relocation, inconsistency = -1514994 45764789 45768216 44890644 44894066 NC_060933.1 NC_000009.12 96.62 True relocation, inconsistency = 1067218 46836534 46837983 44895166 44896616 NC_060933.1 NC_000009.12 98.69 True relocation, inconsistency = 364088 47202384 47203087 44896929 44897632 NC_060933.1 NC_000009.12 98.72 True relocation, inconsistency = -158893 47049462 47050428 44902900 44903866 NC_060933.1 NC_000009.12 95.82 True relocation, inconsistency = -1580319 45470110 45473393 44903867 44907149 NC_060933.1 NC_000009.12 96.13 True relocation, inconsistency = 1912762 47387324 47389215 44908318 44910210 NC_060933.1 NC_000009.12 96.72 True relocation, inconsistency = -874664 46514552 46515736 44910211 44911396 NC_060933.1 NC_000009.12 95.14 True relocation, inconsistency = 940192 47457901 47461031 44913369 44916501 NC_060933.1 NC_000009.12 96.62 True relocation, inconsistency = -361202 47100318 47103911 44916990 44920582 NC_060933.1 NC_000009.12 95.25 True relocation, inconsistency = 203445 47307357 47308020 44920583 44921249 NC_060933.1 NC_000009.12 97.99 True relocation, inconsistency = -316254 46992065 46995014 44921548 44924497 NC_060933.1 NC_000009.12 96.61 True relocation, inconsistency = 402880 47398031 47398693 44924634 44925296 NC_060933.1 NC_000009.12 98.47 True relocation, inconsistency = -1457343 45941351 45945454 44925297 44929402 NC_060933.1 NC_000009.12 95.86 True relocation, inconsistency = 708227 46654338 46655563 44930059 44931287 NC_060933.1 NC_000009.12 95.34 True relocation, inconsistency = 464833 47120397 47125344 44931288 44936237 NC_060933.1 NC_000009.12 96.43 True relocation, inconsistency = -2144743 44983324 44984695 44938960 44940331 NC_060933.1 NC_000009.12 98.91 True relocation, inconsistency = 2400450 47386574 47387520 44941760 44942709 NC_060933.1 NC_000009.12 96.32 True relocation, inconsistency = -2363580 45024902 45027645 44943671 44946424 NC_060933.1 NC_000009.12 95.79 True relocation, inconsistency = 17000 45044646 45047238 44946425 44949025 NC_060933.1 NC_000009.12 96.05 True relocation, inconsistency = 815255 45862717 45864972 44949249 44951505 NC_060933.1 NC_000009.12 97.52 True indel: indel (> 5bp) 45864973 45867337 44951674 44954041 NC_060933.1 NC_000009.12 95.57 True relocation, inconsistency = 473793 46341845 46344026 44954756 44956939 NC_060933.1 NC_000009.12 96.68 True relocation, inconsistency = -702785 45641242 45643845 44956940 44959541 NC_060933.1 NC_000009.12 97.85 True relocation, inconsistency = 688496 46333139 46334262 44960339 44961462 NC_060933.1 NC_000009.12 98.04 True relocation, inconsistency = 712356 47046619 47049290 44961463 44964134 NC_060933.1 NC_000009.12 95.77 True indel: indel (> 5bp) 47049462 47051108 44964135 44965781 NC_060933.1 NC_000009.12 95.83 True relocation, inconsistency = -1333141 45717968 45723127 44965782 44970941 NC_060933.1 NC_000009.12 96.65 True relocation, inconsistency = -614482 45108646 45110989 44970942 44973285 NC_060933.1 NC_000009.12 97.86 True relocation, inconsistency = 1749414 46861060 46862625 44973942 44975507 NC_060933.1 NC_000009.12 95.4 True indel: indel (> 5bp) 46862626 46864291 44975676 44977343 NC_060933.1 NC_000009.12 95.91 True relocation, inconsistency = -954416 45909876 45913979 44977344 44981453 NC_060933.1 NC_000009.12 95.01 True local misassembly 45909876 45914308 44982110 44986544 NC_060933.1 NC_000009.12 95.15 True relocation, inconsistency = 1448994 47366353 47368618 44989595 44991860 NC_060933.1 NC_000009.12 97.71 True relocation, inconsistency = -183385 47185234 47186593 44991861 44993220 NC_060933.1 NC_000009.12 97.52 True relocation, inconsistency = -1897101 45289747 45292188 44993475 44995917 NC_060933.1 NC_000009.12 96.56 True relocation, inconsistency = 617545 45909734 45914091 44995918 45000276 NC_060933.1 NC_000009.12 95.41 True local misassembly 45908140 45914302 45000277 45006444 NC_060933.1 NC_000009.12 97.57 True relocation, inconsistency = 18888 45933524 45934741 45006778 45007995 NC_060933.1 NC_000009.12 95.46 True relocation, inconsistency = 767801 46702543 46707380 45007996 45012833 NC_060933.1 NC_000009.12 95.19 True relocation, inconsistency = -1438926 45269236 45271970 45013615 45016353 NC_060933.1 NC_000009.12 97.26 True relocation, inconsistency = 959648 46231619 46233630 45016354 45018366 NC_060933.1 NC_000009.12 98.21 True relocation, inconsistency = 670161 46903792 46905179 45018367 45019759 NC_060933.1 NC_000009.12 96.04 True relocation, inconsistency = 70612 46976263 46978515 45020231 45022481 NC_060933.1 NC_000009.12 96.67 True relocation, inconsistency = -1834143 45145124 45147771 45023233 45025883 NC_060933.1 NC_000009.12 96.87 True relocation, inconsistency = 1586945 46735343 46738797 45026510 45029963 NC_060933.1 NC_000009.12 96.35 True relocation, inconsistency = -1140947 45597851 45598530 45029964 45030643 NC_060933.1 NC_000009.12 96.38 True relocation, inconsistency = 1975825 47574977 47576048 45031265 45032338 NC_060933.1 NC_000009.12 96.18 True relocation, inconsistency = -152122 47424135 47426313 45032547 45034726 NC_060933.1 NC_000009.12 97.34 True relocation, inconsistency = -1116944 46309370 46311028 45034727 45036388 NC_060933.1 NC_000009.12 96.48 True indel: indel (> 5bp) 46311029 46312431 45036560 45037962 NC_060933.1 NC_000009.12 97.29 True relocation, inconsistency = -1262840 45050555 45053284 45038926 45041656 NC_060933.1 NC_000009.12 96.78 True relocation, inconsistency = 1690743 46744202 46746275 45041831 45043904 NC_060933.1 NC_000009.12 95.66 True indel: indel (> 5bp) 46746447 46747558 45043905 45045009 NC_060933.1 NC_000009.12 97.03 True local misassembly 46747559 46749321 45045690 45047453 NC_060933.1 NC_000009.12 95.24 True indel: indel (> 5bp) 46749322 46750856 45047625 45049159 NC_060933.1 NC_000009.12 97.0 True local misassembly 46751708 46754591 45049160 45052043 NC_060933.1 NC_000009.12 97.57 True relocation, inconsistency = 670332 47424924 47426143 45052044 45053263 NC_060933.1 NC_000009.12 98.54 True relocation, inconsistency = -2321420 45106744 45110989 45055284 45059530 NC_060933.1 NC_000009.12 96.05 True relocation, inconsistency = -64494 45047874 45049875 45060909 45062912 NC_060933.1 NC_000009.12 95.72 True relocation, inconsistency = 807601 45857477 45859722 45062913 45065159 NC_060933.1 NC_000009.12 95.15 True indel: indel (> 5bp) 45859723 45861355 45065327 45066962 NC_060933.1 NC_000009.12 95.17 True relocation, inconsistency = 1544793 47406149 47406861 45066963 45067675 NC_060933.1 NC_000009.12 95.75 True relocation, inconsistency = -1901206 45505656 45509497 45067676 45071522 NC_060933.1 NC_000009.12 95.74 True relocation, inconsistency = 1796890 47306625 47308038 45071760 45073171 NC_060933.1 NC_000009.12 97.52 True relocation, inconsistency = -271338 47037185 47039366 45073656 45075844 NC_060933.1 NC_000009.12 96.27 True relocation, inconsistency = -272889 46766478 46770280 45075845 45079647 NC_060933.1 NC_000009.12 96.24 True relocation, inconsistency = -1502042 45269199 45270945 45080608 45082356 NC_060933.1 NC_000009.12 97.88 True relocation, inconsistency = 2246241 47517187 47518212 45082357 45083383 NC_060933.1 NC_000009.12 98.27 True relocation, inconsistency = -596010 46926413 46928296 45087594 45089476 NC_060933.1 NC_000009.12 97.72 True relocation, inconsistency = 647391 47575688 47576341 45089477 45090131 NC_060933.1 NC_000009.12 96.07 True relocation, inconsistency = -886082 46690260 46691156 45090132 45091028 NC_060933.1 NC_000009.12 96.99 True relocation, inconsistency = -1639020 45052973 45054129 45091865 45093022 NC_060933.1 NC_000009.12 96.24 True relocation, inconsistency = 1997491 47051621 47053544 45093023 45094946 NC_060933.1 NC_000009.12 96.83 True relocation, inconsistency = -2085693 44969902 44970720 45096997 45097816 NC_060933.1 NC_000009.12 95.49 True relocation, inconsistency = 2589335 47560706 47562416 45098467 45100179 NC_060933.1 NC_000009.12 95.68 True indel: indel (> 5bp) 47562417 47563985 45100348 45101917 NC_060933.1 NC_000009.12 97.07 True relocation, inconsistency = -1534128 46030344 46034588 45102404 45106643 NC_060933.1 NC_000009.12 96.59 True relocation, inconsistency = -1058434 44976811 44978222 45107300 45108711 NC_060933.1 NC_000009.12 96.74 True relocation, inconsistency = -24833 44955379 44956260 45110701 45111582 NC_060933.1 NC_000009.12 98.34 True relocation, inconsistency = 1858393 46814654 46816556 45111583 45113486 NC_060933.1 NC_000009.12 95.22 True relocation, inconsistency = 428394 47245911 47248002 45114447 45116537 NC_060933.1 NC_000009.12 96.56 True relocation, inconsistency = -1401361 45847386 45849679 45117282 45119575 NC_060933.1 NC_000009.12 98.21 True relocation, inconsistency = 1413096 47262945 47264496 45119745 45121296 NC_060933.1 NC_000009.12 97.87 True relocation, inconsistency = -294489 46972849 46974037 45124138 45125329 NC_060933.1 NC_000009.12 95.17 True relocation, inconsistency = -1893353 45080685 45082749 45125330 45127393 NC_060933.1 NC_000009.12 96.51 True relocation, inconsistency = 588802 45673429 45675834 45129271 45131676 NC_060933.1 NC_000009.12 96.97 True relocation, inconsistency = -78832 45600861 45603927 45135535 45138602 NC_060933.1 NC_000009.12 97.33 True relocation, inconsistency = -622688 44981579 44983397 45138942 45140762 NC_060933.1 NC_000009.12 96.71 True relocation, inconsistency = 1314817 46299108 46303261 45141656 45145810 NC_060933.1 NC_000009.12 96.85 True relocation, inconsistency = -913886 45391174 45394441 45147609 45150878 NC_060933.1 NC_000009.12 96.11 True relocation, inconsistency = 1435698 46830140 46833724 45150879 45154465 NC_060933.1 NC_000009.12 96.6 True relocation, inconsistency = -854814 45978911 45980270 45154466 45155827 NC_060933.1 NC_000009.12 98.16 True relocation, inconsistency = 1441785 47426772 47428695 45160544 45162467 NC_060933.1 NC_000009.12 97.71 True relocation, inconsistency = -1335898 46092798 46093600 45162468 45163270 NC_060933.1 NC_000009.12 99.42 True relocation, inconsistency = 609088 46702689 46706006 45163271 45166588 NC_060933.1 NC_000009.12 95.33 True relocation, inconsistency = -1140045 45566042 45566721 45166669 45167348 NC_060933.1 NC_000009.12 97.56 True relocation, inconsistency = 1035049 46601771 46604514 45167349 45170094 NC_060933.1 NC_000009.12 96.47 True relocation, inconsistency = -148176 46456339 46458403 45170095 45172159 NC_060933.1 NC_000009.12 96.65 True relocation, inconsistency = 744168 47202651 47203255 45172239 45172843 NC_060933.1 NC_000009.12 99.01 True relocation, inconsistency = -2201742 45002000 45003429 45173330 45174759 NC_060933.1 NC_000009.12 98.67 True relocation, inconsistency = 2480625 47484121 47485883 45174826 45176588 NC_060933.1 NC_000009.12 96.6 True relocation, inconsistency = -608602 46878904 46880406 45178211 45179713 NC_060933.1 NC_000009.12 95.21 True relocation, inconsistency = 99378 46988016 46990084 45187945 45190013 NC_060933.1 NC_000009.12 95.6 True relocation, inconsistency = -2002684 44989247 44990068 45191860 45192681 NC_060933.1 NC_000009.12 98.12 True relocation, inconsistency = 1554200 46544269 46546173 45192682 45194586 NC_060933.1 NC_000009.12 97.17 True relocation, inconsistency = 913991 47460165 47461031 45194587 45195453 NC_060933.1 NC_000009.12 95.75 True relocation, inconsistency = -481148 46981190 46982720 45196760 45198289 NC_060933.1 NC_000009.12 97.71 True relocation, inconsistency = -1018911 45964320 45965679 45198800 45200159 NC_060933.1 NC_000009.12 97.18 True relocation, inconsistency = 1500915 47466595 47468357 45200160 45201920 NC_060933.1 NC_000009.12 96.2 True relocation, inconsistency = -506679 46962163 46963940 45202405 45204182 NC_060933.1 NC_000009.12 95.95 True relocation, inconsistency = -707770 46256404 46258519 45204416 45206529 NC_060933.1 NC_000009.12 96.55 True relocation, inconsistency = 920601 47179864 47180629 45207273 45208038 NC_060933.1 NC_000009.12 98.69 True relocation, inconsistency = 190539 47371827 47373001 45208697 45209871 NC_060933.1 NC_000009.12 96.09 True indel: indel (> 5bp) 47373002 47374574 45210040 45211612 NC_060933.1 NC_000009.12 96.44 True relocation, inconsistency = -1571143 45811543 45813636 45219724 45221818 NC_060933.1 NC_000009.12 96.42 True relocation, inconsistency = 767091 46580728 46581917 45221819 45223011 NC_060933.1 NC_000009.12 97.75 True relocation, inconsistency = 715406 47303361 47304240 45229049 45229928 NC_060933.1 NC_000009.12 96.97 True relocation, inconsistency = -60202 47244039 47245768 45229929 45231658 NC_060933.1 NC_000009.12 96.3 True indel: indel (> 5bp) 47245769 47248002 45231830 45234063 NC_060933.1 NC_000009.12 95.3 True relocation, inconsistency = -1287205 45960798 45961425 45234064 45234691 NC_060933.1 NC_000009.12 98.38 True indel: indel (> 5bp) 45961597 45963831 45234692 45236927 NC_060933.1 NC_000009.12 96.65 True relocation, inconsistency = 1396929 47360761 47361470 45236928 45237637 NC_060933.1 NC_000009.12 97.22 True relocation, inconsistency = -1190241 46173216 46175658 45239624 45242066 NC_060933.1 NC_000009.12 96.4 True relocation, inconsistency = -1212217 44963924 44964742 45242549 45243368 NC_060933.1 NC_000009.12 95.87 True relocation, inconsistency = 2030220 46994963 46998029 45243369 45246436 NC_060933.1 NC_000009.12 96.94 True relocation, inconsistency = -1279715 45718316 45721754 45246438 45249877 NC_060933.1 NC_000009.12 96.57 True relocation, inconsistency = 29944 45751821 45753350 45250000 45251529 NC_060933.1 NC_000009.12 97.6 True relocation, inconsistency = 733416 46486767 46490290 45251530 45255052 NC_060933.1 NC_000009.12 96.57 True relocation, inconsistency = 664727 47155018 47155623 45255053 45255658 NC_060933.1 NC_000009.12 99.86 True relocation, inconsistency = -1621344 45534315 45536267 45255694 45257643 NC_060933.1 NC_000009.12 95.47 True relocation, inconsistency = 1580351 47116619 47119902 45257644 45260927 NC_060933.1 NC_000009.12 95.22 True relocation, inconsistency = -1509631 45610272 45612481 45260928 45263134 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = 1564580 47177062 47177907 45263135 45263981 NC_060933.1 NC_000009.12 95.41 True relocation, inconsistency = -1954766 45223603 45224986 45264443 45265830 NC_060933.1 NC_000009.12 97.55 True relocation, inconsistency = 1261125 46486903 46490542 45266622 45270263 NC_060933.1 NC_000009.12 95.66 True relocation, inconsistency = -1179464 45311080 45314130 45270265 45273316 NC_060933.1 NC_000009.12 95.38 True relocation, inconsistency = 399269 45713914 45717509 45273831 45277427 NC_060933.1 NC_000009.12 96.33 True relocation, inconsistency = 441640 46159213 46161189 45277491 45279469 NC_060933.1 NC_000009.12 96.11 True relocation, inconsistency = 946299 47109333 47112541 45281314 45284524 NC_060933.1 NC_000009.12 96.54 True relocation, inconsistency = -1643443 45470110 45473563 45285536 45288992 NC_060933.1 NC_000009.12 96.76 True relocation, inconsistency = 862861 46336425 46337766 45288993 45290334 NC_060933.1 NC_000009.12 96.13 True relocation, inconsistency = 988292 47326059 47328123 45290335 45292399 NC_060933.1 NC_000009.12 95.79 True relocation, inconsistency = -1818838 45510246 45511741 45293360 45294856 NC_060933.1 NC_000009.12 96.89 True relocation, inconsistency = 1081149 46592891 46595827 45294857 45297793 NC_060933.1 NC_000009.12 95.78 True relocation, inconsistency = -1471237 45124776 45126825 45297979 45300026 NC_060933.1 NC_000009.12 97.32 True relocation, inconsistency = 1886215 47013707 47016246 45300693 45303233 NC_060933.1 NC_000009.12 96.18 True relocation, inconsistency = -2033469 44984834 44986547 45305290 45307003 NC_060933.1 NC_000009.12 97.96 True relocation, inconsistency = 2211100 47203574 47205121 45312930 45314480 NC_060933.1 NC_000009.12 95.49 True relocation, inconsistency = -1164722 46047014 46049249 45321095 45323331 NC_060933.1 NC_000009.12 97.99 True relocation, inconsistency = -823041 45226209 45227545 45323332 45324668 NC_060933.1 NC_000009.12 96.81 True indel: indel (> 5bp) 45227717 45228420 45324669 45325372 NC_060933.1 NC_000009.12 95.03 True relocation, inconsistency = 319304 45550219 45550933 45327867 45328580 NC_060933.1 NC_000009.12 96.6 True relocation, inconsistency = -506282 45044652 45047377 45328581 45331316 NC_060933.1 NC_000009.12 95.47 True relocation, inconsistency = -93815 44954199 44955236 45331953 45332991 NC_060933.1 NC_000009.12 99.13 True indel: indel (> 5bp) 44955237 44955993 45333164 45333920 NC_060933.1 NC_000009.12 96.96 True relocation, inconsistency = 69167 45041001 45042457 45349761 45351219 NC_060933.1 NC_000009.12 95.68 True relocation, inconsistency = 2020956 47070959 47071587 45358765 45359393 NC_060933.1 NC_000009.12 95.08 True relocation, inconsistency = -2120557 44952701 44953208 45361064 45361571 NC_060933.1 NC_000009.12 100.0 True relocation, inconsistency = 1371455 46328851 46331107 45365759 45368018 NC_060933.1 NC_000009.12 95.71 True local misassembly 46333030 46335178 45370281 45372430 NC_060933.1 NC_000009.12 95.07 True local misassembly 46335691 46337754 45372431 45374494 NC_060933.1 NC_000009.12 95.64 True relocation, inconsistency = 920933 47259681 47261735 45375488 45377545 NC_060933.1 NC_000009.12 95.68 True indel: indel (> 5bp) 47261736 47263120 45377714 45379098 NC_060933.1 NC_000009.12 96.46 True local misassembly 47263121 47264607 45379608 45381094 NC_060933.1 NC_000009.12 96.97 True relocation, inconsistency = -921096 46350971 46352247 45388554 45389831 NC_060933.1 NC_000009.12 97.97 True local misassembly 46354738 46356330 45392149 45393741 NC_060933.1 NC_000009.12 96.55 True relocation, inconsistency = 1067093 47424228 47426648 45394546 45396967 NC_060933.1 NC_000009.12 97.73 True relocation, inconsistency = -666418 46763766 46766019 45400503 45402756 NC_060933.1 NC_000009.12 97.43 True relocation, inconsistency = 452545 47219049 47220604 45403241 45404797 NC_060933.1 NC_000009.12 97.56 True relocation, inconsistency = 107003 47327934 47329818 45405124 45407006 NC_060933.1 NC_000009.12 95.97 True relocation, inconsistency = -954939 46375334 46377046 45407461 45409173 NC_060933.1 NC_000009.12 95.74 True local misassembly 46387423 46390301 45419880 45422762 NC_060933.1 NC_000009.12 95.32 True local misassembly 46390814 46393206 45422763 45425156 NC_060933.1 NC_000009.12 95.36 True indel: indel (> 5bp) 46393207 46395802 45425325 45427921 NC_060933.1 NC_000009.12 95.3 True relocation, inconsistency = 830590 47227217 47228718 45428746 45430247 NC_060933.1 NC_000009.12 98.39 True relocation, inconsistency = -2127617 45101102 45103195 45430248 45432341 NC_060933.1 NC_000009.12 97.23 True relocation, inconsistency = 790062 45893884 45896811 45432968 45435895 NC_060933.1 NC_000009.12 97.03 True relocation, inconsistency = 462397 46362437 46362944 45439124 45439631 NC_060933.1 NC_000009.12 98.62 True indel: indel (> 5bp) 46363115 46363988 45439632 45440505 NC_060933.1 NC_000009.12 95.19 True relocation, inconsistency = 668283 47032420 47033123 45440654 45441357 NC_060933.1 NC_000009.12 98.01 True relocation, inconsistency = -2071222 44967494 44968149 45446950 45447605 NC_060933.1 NC_000009.12 95.59 True relocation, inconsistency = 973885 45942035 45945656 45447606 45451227 NC_060933.1 NC_000009.12 96.66 True relocation, inconsistency = 115164 46060821 46062518 45451228 45452930 NC_060933.1 NC_000009.12 96.93 True relocation, inconsistency = 870743 46933262 46934283 45452931 45453952 NC_060933.1 NC_000009.12 98.85 True relocation, inconsistency = -688539 46246335 46248942 45454543 45457151 NC_060933.1 NC_000009.12 96.13 True relocation, inconsistency = 642427 46891370 46893108 45457152 45458891 NC_060933.1 NC_000009.12 97.14 True relocation, inconsistency = -407984 46486767 46490513 45460534 45464281 NC_060933.1 NC_000009.12 96.67 True relocation, inconsistency = 85915 46578122 46580387 45465975 45468240 NC_060933.1 NC_000009.12 96.03 True relocation, inconsistency = -848754 45734665 45737236 45471272 45473849 NC_060933.1 NC_000009.12 97.28 True relocation, inconsistency = -22794 45714443 45716659 45473850 45476066 NC_060933.1 NC_000009.12 95.2 True relocation, inconsistency = 408633 46125293 46126142 45476067 45476914 NC_060933.1 NC_000009.12 95.56 True local misassembly 46126601 46128694 45477542 45479635 NC_060933.1 NC_000009.12 97.09 True relocation, inconsistency = 980666 47116755 47120070 45487030 45490346 NC_060933.1 NC_000009.12 96.47 True relocation, inconsistency = -1222903 45897168 45898475 45490347 45491654 NC_060933.1 NC_000009.12 96.85 True relocation, inconsistency = 247180 46145656 46148048 45491655 45494047 NC_060933.1 NC_000009.12 95.82 True indel: indel (> 5bp) 46148049 46150263 45494216 45496430 NC_060933.1 NC_000009.12 97.07 True relocation, inconsistency = -550067 45600861 45603604 45497095 45499838 NC_060933.1 NC_000009.12 97.01 True relocation, inconsistency = 1226694 46831090 46833726 45500630 45503267 NC_060933.1 NC_000009.12 95.04 True relocation, inconsistency = -521805 46311922 46312547 45503268 45503893 NC_060933.1 NC_000009.12 97.74 True relocation, inconsistency = 426708 46739256 46739989 45503894 45504629 NC_060933.1 NC_000009.12 97.55 True relocation, inconsistency = 368179 47109475 47110834 45505936 45507295 NC_060933.1 NC_000009.12 96.93 True relocation, inconsistency = -1800128 45310707 45314482 45507296 45511071 NC_060933.1 NC_000009.12 96.37 True relocation, inconsistency = 967647 46284476 46286567 45513418 45515510 NC_060933.1 NC_000009.12 96.13 True relocation, inconsistency = -620602 45666594 45668306 45516139 45517853 NC_060933.1 NC_000009.12 97.78 True relocation, scaffold gap is present, inconsistency = -13088441 47580571 47619559 60557548 60518559 NC_060933.1 NC_000009.12 99.94 True local misassembly 47573222 47576695 60561837 60558367 NC_060933.1 NC_000009.12 98.53 True local misassembly 47570833 47572534 60563539 60561838 NC_060933.1 NC_000009.12 99.0 True local misassembly 47567128 47570832 60567922 60564218 NC_060933.1 NC_000009.12 99.22 True local misassembly 47566437 47567127 60569805 60569115 NC_060933.1 NC_000009.12 98.12 True local misassembly 47565672 47566436 60571085 60570321 NC_060933.1 NC_000009.12 95.56 True local misassembly 47561749 47564596 60576029 60573181 NC_060933.1 NC_000009.12 95.86 True local misassembly 47555538 47561068 60581561 60576030 NC_060933.1 NC_000009.12 97.69 True local misassembly 47552986 47554345 60582921 60581562 NC_060933.1 NC_000009.12 98.9 True local misassembly 47548846 47552305 60586381 60582922 NC_060933.1 NC_000009.12 99.22 True local misassembly 47543348 47548165 60591200 60586382 NC_060933.1 NC_000009.12 95.64 True local misassembly 47541180 47543347 60593878 60591713 NC_060933.1 NC_000009.12 98.39 True local misassembly 47533158 47539986 60600707 60593879 NC_060933.1 NC_000009.12 98.55 True local misassembly 47531436 47532477 60601747 60600708 NC_060933.1 NC_000009.12 97.5 True local misassembly 47528473 47530755 60604026 60601748 NC_060933.1 NC_000009.12 97.33 True local misassembly 47527890 47528472 60605287 60604705 NC_060933.1 NC_000009.12 95.56 True relocation, inconsistency = 187715 47338785 47340174 60606675 60605288 NC_060933.1 NC_000009.12 95.9 True local misassembly 47332657 47338104 60612117 60606676 NC_060933.1 NC_000009.12 96.4 True relocation, inconsistency = -185829 47500123 47509190 60630477 60621413 NC_060933.1 NC_000009.12 97.61 True local misassembly 47498555 47499442 60631363 60630478 NC_060933.1 NC_000009.12 97.41 True local misassembly 47498026 47498554 60632234 60631706 NC_060933.1 NC_000009.12 98.68 True local misassembly 47497198 47498025 60633406 60632579 NC_060933.1 NC_000009.12 99.76 True local misassembly 47494404 47497197 60636879 60634087 NC_060933.1 NC_000009.12 98.93 True local misassembly 47487992 47494061 60642950 60636880 NC_060933.1 NC_000009.12 98.88 True relocation, inconsistency = -100888 47585534 47588129 60646296 60643701 NC_060933.1 NC_000009.12 99.92 True local misassembly 47580571 47584174 60649900 60646297 NC_060933.1 NC_000009.12 99.61 True fake: not a misassembly (possible transposable element) 47287787 47291887 60656129 60652031 NC_060933.1 NC_000009.12 97.51 True fake: not a misassembly (possible transposable element) 47569492 47571082 60660302 60658710 NC_060933.1 NC_000009.12 95.17 True local misassembly 47564462 47569491 60666013 60660980 NC_060933.1 NC_000009.12 98.09 True local misassembly 47556742 47563479 60673053 60666319 NC_060933.1 NC_000009.12 97.46 True relocation, inconsistency = 284183 47271281 47272558 60674331 60673054 NC_060933.1 NC_000009.12 99.46 True local misassembly 47269003 47271280 60676947 60674670 NC_060933.1 NC_000009.12 99.08 True local misassembly 47265884 47267134 60678198 60676948 NC_060933.1 NC_000009.12 96.48 True local misassembly 47263138 47264470 60679749 60678420 NC_060933.1 NC_000009.12 96.32 True indel: indel (> 5bp) 47261736 47262966 60680980 60679750 NC_060933.1 NC_000009.12 97.24 True local misassembly 47253093 47260054 60688432 60681471 NC_060933.1 NC_000009.12 99.28 True relocation, scaffold gap is present, inconsistency = 7456211 39705790 39746881 60779521 60738433 NC_060933.1 NC_000009.12 99.56 True relocation, scaffold gap is present, inconsistency = -1676411 41321960 41332200 60839754 60829522 NC_060933.1 NC_000009.12 96.49 True relocation, inconsistency = 1863304 39294210 39458655 60839755 61003887 NC_060933.1 NC_000009.12 99.12 True relocation, scaffold gap is present, inconsistency = 1696081 41204737 41383430 61231966 61053888 NC_060933.1 NC_000009.12 99.33 True relocation, scaffold gap is present, inconsistency = 1804252 39163561 39350484 61468808 61281967 NC_060933.1 NC_000009.12 99.87 True relocation, scaffold gap is present, inconsistency = -4233404 43331568 43346964 61534024 61518809 NC_060933.1 NC_000009.12 95.67 True relocation, inconsistency = 4876120 48223085 48424795 61534025 61735368 NC_060933.1 NC_000009.12 97.24 True relocation, scaffold gap is present, inconsistency = 30739446 79214242 79578256 62149738 61785369 NC_060933.1 NC_000009.12 99.48 True relocation, scaffold gap is present, inconsistency = 39099061 39981256 40015180 62283644 62249739 NC_060933.1 NC_000009.12 99.66 True indel: indel (> 5bp) 39955860 39981231 62309020 62283645 NC_060933.1 NC_000009.12 99.79 True indel: indel (> 5bp) 39880294 39955831 62384563 62309021 NC_060933.1 NC_000009.12 99.64 True relocation, inconsistency = 38323198 78279030 78324498 62384564 62430016 NC_060933.1 NC_000009.12 99.47 True indel: indel (> 5bp) 78324499 78332533 62430041 62438055 NC_060933.1 NC_000009.12 96.78 True relocation, inconsistency = 38405995 39815008 39827868 62541504 62528691 NC_060933.1 NC_000009.12 97.12 True indel: indel (> 5bp) 39814237 39814969 62542264 62541532 NC_060933.1 NC_000009.12 97.95 True indel: indel (> 5bp) 39711809 39814236 62644743 62542289 NC_060933.1 NC_000009.12 99.08 True local misassembly 39694286 39711472 62661952 62644744 NC_060933.1 NC_000009.12 99.66 True local misassembly 39607119 39693967 62748832 62661953 NC_060933.1 NC_000009.12 99.74 True relocation, scaffold gap is present, inconsistency = 1017563 40761531 40921006 62798833 62958371 NC_060933.1 NC_000009.12 99.56 True relocation, scaffold gap is present, inconsistency = 1694846 42665853 42860506 63008372 63202857 NC_060933.1 NC_000009.12 99.39 True relocation, scaffold gap is present, inconsistency = 34559479 77469991 77712617 63492264 63252863 NC_060933.1 NC_000009.12 98.16 True relocation, scaffold gap is present, inconsistency = 29402162 47636218 48017828 63918447 63542265 NC_060933.1 NC_000009.12 98.35 True relocation, scaffold gap is present, inconsistency = -29435251 76854864 77021468 64135013 63968448 NC_060933.1 NC_000009.12 99.92 True translocation, scaffold gap is present 62600961 62618452 64185014 64202505 NC_060930.1 NC_000009.12 100.0 True local misassembly 62625289 62637944 64202506 64215161 NC_060930.1 NC_000009.12 99.99 True translocation, scaffold gap is present 42427432 43117604 64998124 64315163 NC_060933.1 NC_000009.12 96.24 True translocation, scaffold gap is present 15611910 15643510 65048141 65079418 NC_060942.1 NC_000009.12 98.85 True translocation, scaffold gap is present 40499749 40628788 65130083 65258498 NC_060933.1 NC_000009.12 99.26 True relocation, inconsistency = 39404049 80033409 80035601 65259070 65261262 NC_060933.1 NC_000009.12 99.59 True local misassembly 80035602 80099235 65261469 65325123 NC_060933.1 NC_000009.12 99.56 True relocation, scaffold gap is present, inconsistency = -32015648 48133588 48353622 65375124 65595191 NC_060933.1 NC_000009.12 99.94 True relocation, scaffold gap is present, inconsistency = 7336608 40629507 40746979 65762621 65645192 NC_060933.1 NC_000009.12 99.77 True local misassembly 39998970 40628730 66391387 65763491 NC_060933.1 NC_000009.12 99.3 True relocation, scaffold gap is present, inconsistency = 37532028 78360759 79703192 66591388 67920552 NC_060933.1 NC_000009.12 98.25 True relocation, scaffold gap is present, inconsistency = 391885 80395078 86434728 68220553 74283224 NC_060933.1 NC_000009.12 99.31 True local misassembly 86436534 109427710 74283474 97255925 NC_060933.1 NC_000009.12 99.61 True indel: indel (> 5bp) 109428068 136176961 97256119 123979060 NC_060933.1 NC_000009.12 99.59 True local misassembly 136188937 146396729 123991039 134183092 NC_060933.1 NC_000009.12 99.27 True fake: scaffold gap size wrong estimation (local) 146399766 150577184 134185537 138304683 NC_060933.1 NC_000009.12 97.6 True translocation 200978765 201008815 138304684 138334717 NC_060927.1 NC_000009.12 99.9 True CONTIG NC_000009.12 138394717 misassembled 80008024 80048340 1 40060 NC_060933.1 NT_187372.1 98.45 True CONTIG NT_187372.1 40062 correct 80378550 80416595 38054 1 NC_060933.1 NT_187373.1 99.65 True CONTIG NT_187373.1 38054 correct 6594205 6770846 176845 1 NC_060938.1 NT_187374.1 99.6 True CONTIG NT_187374.1 176845 correct 14875192 14914267 39050 1 NC_060939.1 NT_187375.1 99.76 True CONTIG NT_187375.1 39050 correct 3741 469943 10733 477343 NC_060934.1 NC_000010.11 98.91 True local misassembly 472687 511348 478102 516562 NC_060934.1 NC_000010.11 98.29 True local misassembly 511790 1232790 516797 1235711 NC_060934.1 NC_000010.11 98.58 True local misassembly 1233541 7629512 1236609 7628555 NC_060934.1 NC_000010.11 99.15 True indel: indel (> 5bp) 7629632 13077353 7628585 13063037 NC_060934.1 NC_000010.11 99.36 True indel: indel (> 5bp) 13077666 38573863 13063278 38529853 NC_060934.1 NC_000010.11 99.54 True relocation, scaffold gap is present, inconsistency = 14725 38632320 38973919 38573585 38906036 NC_060934.1 NC_000010.11 97.11 True fake: scaffold gap size wrong estimation (local) 38986927 39298764 38918270 39229918 NC_060934.1 NC_000010.11 99.53 True fake: scaffold gap size wrong estimation (local) 39299142 39478932 39230137 39409792 NC_060934.1 NC_000010.11 98.44 True fake: scaffold gap size wrong estimation (local) 39479421 39523488 39410238 39454303 NC_060934.1 NC_000010.11 99.75 True indel: indel (<= 5bp) 39523677 39547895 39454495 39478714 NC_060934.1 NC_000010.11 99.53 True indel: indel (> 5bp) 39548066 39548701 39478715 39479349 NC_060934.1 NC_000010.11 99.37 True local misassembly 39549045 39566893 39479350 39497210 NC_060934.1 NC_000010.11 99.6 True fake: scaffold gap size wrong estimation (local) 39566980 39572193 39497297 39502510 NC_060934.1 NC_000010.11 99.85 True local misassembly 39572194 39576170 39502853 39506829 NC_060934.1 NC_000010.11 99.85 True local misassembly 39576171 39620270 39507172 39551273 NC_060934.1 NC_000010.11 99.78 True indel: indel (> 5bp) 39620271 39627267 39551444 39558440 NC_060934.1 NC_000010.11 99.6 True local misassembly 39627469 39636454 39561019 39570007 NC_060934.1 NC_000010.11 99.19 True local misassembly 39637809 39638441 39570008 39570640 NC_060934.1 NC_000010.11 100.0 True fake: scaffold gap size wrong estimation (local) 39639417 39641431 39574188 39576202 NC_060934.1 NC_000010.11 99.5 True local misassembly 39642790 39646770 39576203 39580183 NC_060934.1 NC_000010.11 99.85 True relocation, scaffold gap is present, inconsistency = 1980019 41654995 41659328 39608389 39612722 NC_060934.1 NC_000010.11 95.44 True relocation, scaffold gap is present, inconsistency = -581039 41081799 41082707 39616232 39617141 NC_060934.1 NC_000010.11 95.28 True relocation, scaffold gap is present, inconsistency = -1415954 39667971 39670171 39618359 39620559 NC_060934.1 NC_000010.11 95.68 True local misassembly 39670512 39672132 39620560 39622185 NC_060934.1 NC_000010.11 95.26 True local misassembly 39669063 39672469 39625342 39628745 NC_060934.1 NC_000010.11 95.28 True local misassembly 39669422 39672514 39629089 39632168 NC_060934.1 NC_000010.11 95.28 True local misassembly 39668065 39670634 39632467 39635037 NC_060934.1 NC_000010.11 96.34 True relocation, scaffold gap is present, inconsistency = 2196394 41919930 41922305 39687939 39690318 NC_060934.1 NC_000010.11 97.06 True relocation, inconsistency = -39388 41882918 41884400 39690319 39691802 NC_060934.1 NC_000010.11 97.76 True local misassembly 41885081 41886512 39691803 39693236 NC_060934.1 NC_000010.11 97.49 True local misassembly 41887191 41888302 39693237 39694348 NC_060934.1 NC_000010.11 98.47 True local misassembly 41888983 41892581 39694349 39697949 NC_060934.1 NC_000010.11 98.31 True local misassembly 41893602 41909953 39697950 39714317 NC_060934.1 NC_000010.11 98.32 True local misassembly 41910633 41913041 39714318 39716728 NC_060934.1 NC_000010.11 98.67 True local misassembly 41913721 41919351 39716729 39722366 NC_060934.1 NC_000010.11 98.85 True local misassembly 41920031 41922336 39722367 39724675 NC_060934.1 NC_000010.11 98.32 True relocation, inconsistency = -12221 41910116 41913754 39724676 39728316 NC_060934.1 NC_000010.11 99.29 True fake: not a misassembly (possible transposable element) 41887606 41888836 39728317 39729547 NC_060934.1 NC_000010.11 96.16 True fake: not a misassembly (possible transposable element) 41913755 41920225 39730015 39736492 NC_060934.1 NC_000010.11 98.58 True relocation, inconsistency = -27504 41892722 41922698 39736493 39766492 NC_060934.1 NC_000010.11 98.26 True relocation, inconsistency = -29879 41893127 41914781 39766800 39788467 NC_060934.1 NC_000010.11 98.5 True relocation, inconsistency = 7466 41922898 41924043 39789118 39790263 NC_060934.1 NC_000010.11 98.52 True relocation, inconsistency = -24785 41899502 41903405 39790507 39794411 NC_060934.1 NC_000010.11 98.46 True local misassembly 41903406 41922401 39795434 39814433 NC_060934.1 NC_000010.11 98.05 True relocation, inconsistency = -29880 41892722 41907978 39814634 39829895 NC_060934.1 NC_000010.11 97.74 True fake: not a misassembly (possible transposable element) 41891678 41892721 39829896 39830940 NC_060934.1 NC_000010.11 98.26 True fake: not a misassembly (possible transposable element) 41914091 41922806 39831256 39839973 NC_060934.1 NC_000010.11 98.43 True relocation, inconsistency = -13578 41909229 41922076 39839974 39852837 NC_060934.1 NC_000010.11 97.75 True relocation, inconsistency = -35992 41886085 41888302 39852838 39855058 NC_060934.1 NC_000010.11 97.74 True local misassembly 41888983 41892581 39855059 39858656 NC_060934.1 NC_000010.11 98.47 True local misassembly 41893602 41922701 39858657 39887778 NC_060934.1 NC_000010.11 98.34 True relocation, inconsistency = -35314 41887557 41888824 39887948 39889216 NC_060934.1 NC_000010.11 97.56 True relocation, inconsistency = 15620 41905138 41922729 39889910 39907510 NC_060934.1 NC_000010.11 98.07 True local misassembly 41922730 41924088 39907851 39909209 NC_060934.1 NC_000010.11 96.84 True local misassembly 41924089 41925533 39909552 39910998 NC_060934.1 NC_000010.11 96.26 True relocation, inconsistency = -21050 41904484 41922684 39910999 39929214 NC_060934.1 NC_000010.11 98.34 True local misassembly 41922881 41924089 39931110 39932318 NC_060934.1 NC_000010.11 97.77 True relocation, inconsistency = -692478 41234647 41237240 39935354 39938049 NC_060934.1 NC_000010.11 96.42 True relocation, inconsistency = -1575527 39667804 39669705 39944140 39946042 NC_060934.1 NC_000010.11 96.22 True local misassembly 39667998 39669354 39949087 39950443 NC_060934.1 NC_000010.11 96.7 True local misassembly 39667998 39670848 39950444 39953292 NC_060934.1 NC_000010.11 96.88 True local misassembly 39666273 39667932 39954486 39956146 NC_060934.1 NC_000010.11 96.63 True local misassembly 39668273 39670005 39956147 39957882 NC_060934.1 NC_000010.11 96.78 True relocation, inconsistency = 989088 40659094 40662922 39957883 39961716 NC_060934.1 NC_000010.11 97.5 True relocation, inconsistency = 762753 41426233 41427355 39962274 39963397 NC_060934.1 NC_000010.11 96.0 True local misassembly 41427696 41430949 39963398 39966651 NC_060934.1 NC_000010.11 96.07 True local misassembly 41430950 41432319 39966990 39968360 NC_060934.1 NC_000010.11 97.02 True relocation, inconsistency = 193786 41626106 41629268 39968361 39971521 NC_060934.1 NC_000010.11 96.68 True relocation, inconsistency = -1959875 39669394 39670685 39971522 39972813 NC_060934.1 NC_000010.11 97.06 True local misassembly 39667971 39670849 39972814 39975694 NC_060934.1 NC_000010.11 96.95 True local misassembly 39671187 39673076 39975695 39977587 NC_060934.1 NC_000010.11 96.25 True local misassembly 39666969 39667655 39977588 39978275 NC_060934.1 NC_000010.11 96.33 True local misassembly 39667996 39670005 39978276 39980287 NC_060934.1 NC_000010.11 97.16 True relocation, inconsistency = 1347092 41017098 41019119 39980288 39982314 NC_060934.1 NC_000010.11 96.94 True relocation, inconsistency = -1165112 39854008 39860991 39982315 39989305 NC_060934.1 NC_000010.11 98.08 True relocation, inconsistency = 354998 40215990 40218371 39989306 39991687 NC_060934.1 NC_000010.11 99.23 True relocation, inconsistency = 1078932 41297304 41302720 39991688 39997104 NC_060934.1 NC_000010.11 97.03 True relocation, inconsistency = 93669 41396390 41400534 39997105 40001247 NC_060934.1 NC_000010.11 96.54 True relocation, inconsistency = -1732322 39668213 39669327 40001248 40002363 NC_060934.1 NC_000010.11 96.55 True local misassembly 39667971 39670848 40002364 40005242 NC_060934.1 NC_000010.11 96.63 True local misassembly 39668498 39670710 40005945 40008159 NC_060934.1 NC_000010.11 96.72 True local misassembly 39667996 39670710 40008160 40010861 NC_060934.1 NC_000010.11 96.73 True local misassembly 39667996 39672830 40010862 40015700 NC_060934.1 NC_000010.11 95.35 True local misassembly 39668422 39670841 40015701 40018121 NC_060934.1 NC_000010.11 97.33 True relocation, inconsistency = 1570098 41242310 41246282 40019492 40023463 NC_060934.1 NC_000010.11 97.06 True relocation, inconsistency = -1602688 39643595 39644216 40023464 40024087 NC_060934.1 NC_000010.11 95.52 True local misassembly 39644556 39645743 40024088 40025275 NC_060934.1 NC_000010.11 95.04 True relocation, inconsistency = -11533 39634211 39639457 40025276 40030529 NC_060934.1 NC_000010.11 95.22 True relocation, inconsistency = 27156 39666614 39667655 40030530 40031572 NC_060934.1 NC_000010.11 95.52 True local misassembly 39667996 39670685 40031573 40034263 NC_060934.1 NC_000010.11 97.37 True local misassembly 39667971 39670841 40034264 40037135 NC_060934.1 NC_000010.11 96.69 True local misassembly 39668127 39670841 40037136 40039852 NC_060934.1 NC_000010.11 97.19 True local misassembly 39666430 39667655 40039853 40041079 NC_060934.1 NC_000010.11 96.46 True local misassembly 39667996 39670841 40041080 40043925 NC_060934.1 NC_000010.11 97.29 True relocation, inconsistency = -29532 39641672 39647047 40044288 40049666 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = 19692 39666740 39667629 40049667 40050557 NC_060934.1 NC_000010.11 96.68 True local misassembly 39666273 39667655 40050558 40051941 NC_060934.1 NC_000010.11 96.68 True local misassembly 39667996 39670685 40051942 40054632 NC_060934.1 NC_000010.11 97.43 True local misassembly 39667971 39670834 40054633 40057497 NC_060934.1 NC_000010.11 97.28 True local misassembly 39668120 39669733 40057498 40059112 NC_060934.1 NC_000010.11 96.94 True local misassembly 39668863 39670710 40059601 40061449 NC_060934.1 NC_000010.11 97.68 True local misassembly 39667996 39670684 40061450 40064138 NC_060934.1 NC_000010.11 97.22 True relocation, inconsistency = 1719084 41389769 41394719 40064139 40069093 NC_060934.1 NC_000010.11 97.94 True relocation, inconsistency = -99099 41295621 41301273 40069094 40074747 NC_060934.1 NC_000010.11 98.41 True relocation, inconsistency = -1662074 39639317 39640474 40074865 40076023 NC_060934.1 NC_000010.11 95.44 True relocation, inconsistency = 474196 40114671 40118161 40076024 40079515 NC_060934.1 NC_000010.11 98.63 True relocation, inconsistency = -245369 39873341 39878353 40080064 40085076 NC_060934.1 NC_000010.11 99.12 True relocation, inconsistency = 1224513 41102867 41105592 40085077 40087804 NC_060934.1 NC_000010.11 99.18 True relocation, inconsistency = -1471659 39633934 39638196 40087805 40092073 NC_060934.1 NC_000010.11 95.29 True local misassembly 39641589 39647260 40092074 40097751 NC_060934.1 NC_000010.11 95.58 True local misassembly 39647261 39647896 40098091 40098726 NC_060934.1 NC_000010.11 96.27 True relocation, inconsistency = 1935100 41582997 41585459 40098727 40101187 NC_060934.1 NC_000010.11 97.34 True relocation, inconsistency = -1950369 39635091 39639419 40101188 40105522 NC_060934.1 NC_000010.11 95.18 True local misassembly 39639420 39641547 40105864 40107993 NC_060934.1 NC_000010.11 95.4 True local misassembly 39639417 39640170 40108237 40108991 NC_060934.1 NC_000010.11 96.56 True local misassembly 39635828 39643464 40109058 40116699 NC_060934.1 NC_000010.11 95.24 True local misassembly 39644823 39646822 40116700 40118700 NC_060934.1 NC_000010.11 95.84 True relocation, inconsistency = -12889 39633934 39638817 40118701 40123590 NC_060934.1 NC_000010.11 95.32 True local misassembly 39635427 39639505 40123591 40127675 NC_060934.1 NC_000010.11 95.2 True local misassembly 39641833 39647283 40130009 40135457 NC_060934.1 NC_000010.11 95.58 True relocation, inconsistency = 173822 39821106 39824722 40135458 40139074 NC_060934.1 NC_000010.11 98.57 True relocation, inconsistency = -181290 39643497 39646923 40139139 40142569 NC_060934.1 NC_000010.11 95.11 True local misassembly 39641833 39647260 40142570 40147997 NC_060934.1 NC_000010.11 95.34 True relocation, inconsistency = -11195 39636066 39638290 40147998 40150225 NC_060934.1 NC_000010.11 95.49 True local misassembly 39635952 39638737 40150261 40153052 NC_060934.1 NC_000010.11 95.42 True local misassembly 39639417 39643551 40153053 40157191 NC_060934.1 NC_000010.11 95.43 True relocation, inconsistency = 1322661 40966213 40967815 40157192 40158795 NC_060934.1 NC_000010.11 97.61 True relocation, inconsistency = -1333518 39634298 39640158 40158796 40164664 NC_060934.1 NC_000010.11 95.04 True local misassembly 39638122 39639457 40164665 40166000 NC_060934.1 NC_000010.11 95.03 True local misassembly 39639458 39642690 40166342 40169581 NC_060934.1 NC_000010.11 95.37 True relocation, inconsistency = 25800 39668510 39670685 40169601 40171778 NC_060934.1 NC_000010.11 97.56 True local misassembly 39667971 39670841 40171779 40174655 NC_060934.1 NC_000010.11 97.39 True local misassembly 39666438 39667655 40174664 40175882 NC_060934.1 NC_000010.11 96.96 True local misassembly 39667996 39669327 40175883 40177215 NC_060934.1 NC_000010.11 97.28 True local misassembly 39667971 39670841 40177216 40180086 NC_060934.1 NC_000010.11 97.25 True local misassembly 39666922 39667655 40180921 40181655 NC_060934.1 NC_000010.11 96.46 True local misassembly 39667996 39670841 40181656 40184500 NC_060934.1 NC_000010.11 97.4 True relocation, inconsistency = 1683110 41353952 41355016 40184501 40185566 NC_060934.1 NC_000010.11 96.89 True local misassembly 41355017 41357968 40185906 40188858 NC_060934.1 NC_000010.11 96.24 True relocation, inconsistency = -1691255 39666714 39667655 40188859 40189801 NC_060934.1 NC_000010.11 96.6 True local misassembly 39667996 39669865 40189802 40191672 NC_060934.1 NC_000010.11 97.08 True relocation, inconsistency = -13580 39656286 39659269 40191673 40194660 NC_060934.1 NC_000010.11 96.52 True relocation, inconsistency = -18667 39640783 39646996 40194841 40201058 NC_060934.1 NC_000010.11 95.6 True relocation, inconsistency = 453159 40100156 40103542 40201059 40204446 NC_060934.1 NC_000010.11 98.17 True local misassembly 40103881 40104892 40204447 40205458 NC_060934.1 NC_000010.11 98.27 True relocation, inconsistency = 490960 40595853 40599342 40205459 40208955 NC_060934.1 NC_000010.11 96.77 True relocation, inconsistency = -959729 39639614 39647283 40208956 40216631 NC_060934.1 NC_000010.11 95.65 True relocation, inconsistency = 1904549 41551833 41554582 40216632 40219384 NC_060934.1 NC_000010.11 98.16 True relocation, inconsistency = -115041 41439542 41441375 40219385 40221218 NC_060934.1 NC_000010.11 99.42 True relocation, inconsistency = -640931 40800445 40801606 40221219 40222380 NC_060934.1 NC_000010.11 96.69 True relocation, inconsistency = -719175 40082432 40084313 40222381 40224262 NC_060934.1 NC_000010.11 98.94 True local misassembly 40084652 40085586 40224263 40225198 NC_060934.1 NC_000010.11 96.26 True local misassembly 40089220 40094528 40225441 40230752 NC_060934.1 NC_000010.11 96.65 True relocation, inconsistency = -458583 39635946 39637123 40230753 40231931 NC_060934.1 NC_000010.11 95.2 True local misassembly 39635728 39642915 40233930 40241126 NC_060934.1 NC_000010.11 95.24 True relocation, inconsistency = -8141 39634775 39636811 40241127 40243163 NC_060934.1 NC_000010.11 95.64 True relocation, inconsistency = 1940522 41577807 41580109 40243637 40245942 NC_060934.1 NC_000010.11 96.1 True relocation, inconsistency = -894419 40685871 40690206 40246123 40250459 NC_060934.1 NC_000010.11 98.09 True relocation, inconsistency = -1023701 39666506 39667655 40250460 40251610 NC_060934.1 NC_000010.11 96.68 True local misassembly 39667996 39670841 40251611 40254459 NC_060934.1 NC_000010.11 97.4 True local misassembly 39668127 39670077 40254460 40256412 NC_060934.1 NC_000010.11 97.11 True local misassembly 39668848 39669723 40256880 40257756 NC_060934.1 NC_000010.11 97.61 True local misassembly 39668498 39669327 40259249 40260079 NC_060934.1 NC_000010.11 97.57 True local misassembly 39667971 39670848 40260080 40262956 NC_060934.1 NC_000010.11 96.87 True relocation, inconsistency = 600788 40271637 40274302 40262957 40265622 NC_060934.1 NC_000010.11 96.47 True relocation, inconsistency = 732046 41006544 41008568 40265818 40267843 NC_060934.1 NC_000010.11 99.31 True relocation, inconsistency = 437658 41446227 41449199 40267844 40270817 NC_060934.1 NC_000010.11 98.1 True relocation, inconsistency = -1808511 39640689 39646996 40270818 40277132 NC_060934.1 NC_000010.11 95.46 True relocation, inconsistency = 1181834 40828831 40832327 40277133 40280628 NC_060934.1 NC_000010.11 98.2 True relocation, inconsistency = -1197778 39634550 39639458 40280629 40285541 NC_060934.1 NC_000010.11 95.0 True relocation, inconsistency = 845165 40484624 40490489 40285542 40291411 NC_060934.1 NC_000010.11 98.3 True relocation, inconsistency = -823780 39666710 39667655 40291412 40292358 NC_060934.1 NC_000010.11 96.75 True local misassembly 39667996 39670841 40292359 40295205 NC_060934.1 NC_000010.11 97.68 True local misassembly 39668127 39670841 40295206 40297921 NC_060934.1 NC_000010.11 97.33 True local misassembly 39668127 39670103 40297922 40299897 NC_060934.1 NC_000010.11 97.23 True local misassembly 39668498 39669737 40299987 40301227 NC_060934.1 NC_000010.11 98.23 True relocation, inconsistency = 1987022 41657021 41660559 40301489 40305034 NC_060934.1 NC_000010.11 95.01 True relocation, inconsistency = -2020621 39639939 39647014 40305035 40312116 NC_060934.1 NC_000010.11 95.36 True local misassembly 39641585 39643187 40312117 40313719 NC_060934.1 NC_000010.11 95.41 True fake: not a misassembly (possible transposable element) 40674365 40676741 40313720 40316098 NC_060934.1 NC_000010.11 98.27 True fake: not a misassembly (possible transposable element) 39641833 39645464 40316099 40319732 NC_060934.1 NC_000010.11 95.74 True relocation, inconsistency = -11531 39633934 39639520 40319733 40325323 NC_060934.1 NC_000010.11 95.27 True local misassembly 39633961 39639069 40326209 40331323 NC_060934.1 NC_000010.11 95.15 True local misassembly 39639410 39643251 40331324 40335170 NC_060934.1 NC_000010.11 95.09 True relocation, inconsistency = 21387 39667971 39670196 40338503 40340728 NC_060934.1 NC_000010.11 96.23 True local misassembly 39668502 39669733 40340729 40341961 NC_060934.1 NC_000010.11 97.57 True indel: indel (<= 5bp) 39670205 39670841 40342435 40343071 NC_060934.1 NC_000010.11 97.49 True relocation, inconsistency = 670715 40342048 40345062 40343563 40346578 NC_060934.1 NC_000010.11 97.8 True relocation, inconsistency = -710765 39634298 39640512 40346579 40352800 NC_060934.1 NC_000010.11 95.02 True relocation, inconsistency = 27836 39668349 39670841 40352801 40355294 NC_060934.1 NC_000010.11 97.43 True local misassembly 39666438 39667932 40355303 40356798 NC_060934.1 NC_000010.11 97.13 True local misassembly 39668273 39669352 40356799 40357879 NC_060934.1 NC_000010.11 97.59 True local misassembly 39667996 39670841 40357880 40360726 NC_060934.1 NC_000010.11 97.44 True relocation, inconsistency = -36993 39633934 39635768 40360812 40362646 NC_060934.1 NC_000010.11 96.24 True local misassembly 39636106 39638367 40362647 40364908 NC_060934.1 NC_000010.11 95.4 True relocation, inconsistency = 639829 40278258 40282776 40364970 40369486 NC_060934.1 NC_000010.11 99.07 True relocation, inconsistency = -468048 39814729 39817328 40369487 40372083 NC_060934.1 NC_000010.11 96.87 True relocation, inconsistency = 826133 40643462 40648996 40372084 40377619 NC_060934.1 NC_000010.11 98.32 True local misassembly 40648997 40650840 40377960 40379804 NC_060934.1 NC_000010.11 98.37 True relocation, inconsistency = -1016918 39633934 39639060 40379816 40384950 NC_060934.1 NC_000010.11 95.18 True relocation, inconsistency = 29530 39668722 39669326 40385082 40385687 NC_060934.1 NC_000010.11 97.31 True relocation, inconsistency = 1912015 41581342 41584859 40385688 40389210 NC_060934.1 NC_000010.11 96.52 True relocation, inconsistency = -528937 41055923 41059141 40389211 40392430 NC_060934.1 NC_000010.11 99.07 True relocation, inconsistency = -752419 40306723 40316526 40392431 40402240 NC_060934.1 NC_000010.11 97.87 True relocation, inconsistency = -677505 39639417 39641681 40402636 40404902 NC_060934.1 NC_000010.11 95.06 True relocation, inconsistency = 1888254 41531979 41532978 40406946 40407946 NC_060934.1 NC_000010.11 96.55 True relocation, inconsistency = 62466 41595445 41597491 40407947 40409993 NC_060934.1 NC_000010.11 96.39 True local misassembly 41600207 41603842 40409994 40413634 NC_060934.1 NC_000010.11 98.24 True relocation, inconsistency = -566620 41037223 41040617 40413635 40417030 NC_060934.1 NC_000010.11 98.13 True relocation, inconsistency = 392518 41435077 41438468 40418972 40422369 NC_060934.1 NC_000010.11 97.37 True relocation, inconsistency = -1804098 39634371 39638817 40422370 40426820 NC_060934.1 NC_000010.11 95.11 True local misassembly 39640514 39643521 40426821 40429832 NC_060934.1 NC_000010.11 95.24 True fake: not a misassembly (possible transposable element) 39667964 39670204 40429833 40432074 NC_060934.1 NC_000010.11 97.05 True fake: not a misassembly (possible transposable element) 39639317 39644057 40432075 40436821 NC_060934.1 NC_000010.11 95.35 True relocation, inconsistency = 174500 39818583 39820064 40436847 40438324 NC_060934.1 NC_000010.11 97.1 True local misassembly 39820065 39821888 40438665 40440489 NC_060934.1 NC_000010.11 96.44 True relocation, inconsistency = 1427510 41249579 41251888 40440670 40442981 NC_060934.1 NC_000010.11 98.23 True relocation, inconsistency = -1617954 39634211 39637712 40443258 40446761 NC_060934.1 NC_000010.11 95.44 True relocation, inconsistency = 264120 39908237 39912249 40453166 40457183 NC_060934.1 NC_000010.11 97.46 True local misassembly 39912588 39913537 40457184 40458135 NC_060934.1 NC_000010.11 96.32 True relocation, inconsistency = -246134 39667971 39670313 40458703 40461046 NC_060934.1 NC_000010.11 96.36 True relocation, inconsistency = 1131945 40802259 40804328 40461047 40463116 NC_060934.1 NC_000010.11 97.51 True relocation, inconsistency = -1162496 39641833 39646365 40463117 40467651 NC_060934.1 NC_000010.11 95.06 True relocation, inconsistency = -13911 39634298 39637324 40469495 40472524 NC_060934.1 NC_000010.11 95.55 True local misassembly 39636988 39637923 40472525 40473464 NC_060934.1 NC_000010.11 95.31 True relocation, inconsistency = 1791205 41430675 41433560 40475011 40477898 NC_060934.1 NC_000010.11 97.02 True relocation, inconsistency = -1674459 39759102 39760800 40477899 40479595 NC_060934.1 NC_000010.11 98.29 True local misassembly 39761140 39762053 40479596 40480511 NC_060934.1 NC_000010.11 96.07 True relocation, inconsistency = -77379 39684907 39685956 40480744 40481795 NC_060934.1 NC_000010.11 95.53 True local misassembly 39685957 39689779 40482136 40485958 NC_060934.1 NC_000010.11 96.94 True relocation, inconsistency = -22740 39667040 39667932 40485959 40486851 NC_060934.1 NC_000010.11 97.55 True local misassembly 39668273 39670079 40486852 40488659 NC_060934.1 NC_000010.11 96.9 True relocation, inconsistency = 1805446 41475526 41476490 40488660 40489624 NC_060934.1 NC_000010.11 99.35 True relocation, inconsistency = -1773878 39702929 39704988 40489941 40491999 NC_060934.1 NC_000010.11 97.19 True relocation, inconsistency = 1874338 41579327 41580672 40492000 40493345 NC_060934.1 NC_000010.11 97.22 True relocation, scaffold gap is present, inconsistency = -1945707 39635282 39638406 40493662 40496787 NC_060934.1 NC_000010.11 95.25 True local misassembly 39634678 39639520 40496788 40501636 NC_060934.1 NC_000010.11 95.01 True relocation, inconsistency = 1399707 41039228 41041636 40501637 40504046 NC_060934.1 NC_000010.11 96.97 True relocation, inconsistency = -1023584 40018263 40021765 40504257 40507759 NC_060934.1 NC_000010.11 99.49 True relocation, inconsistency = -108261 39913505 39915928 40507760 40510184 NC_060934.1 NC_000010.11 98.63 True relocation, inconsistency = 837964 40754285 40757631 40510577 40513927 NC_060934.1 NC_000010.11 98.03 True relocation, inconsistency = -887861 39869938 39871333 40514095 40515492 NC_060934.1 NC_000010.11 98.5 True relocation, inconsistency = 694413 40565747 40570612 40515493 40520362 NC_060934.1 NC_000010.11 97.62 True relocation, inconsistency = -936132 39634550 39636986 40520432 40522870 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = 32584 39669909 39670841 40523209 40524141 NC_060934.1 NC_000010.11 97.75 True local misassembly 39666273 39670841 40526022 40530590 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = -31569 39640854 39644608 40532172 40535928 NC_060934.1 NC_000010.11 95.02 True relocation, inconsistency = 1680065 41325053 41328452 40536308 40539711 NC_060934.1 NC_000010.11 96.89 True relocation, inconsistency = -267104 41061544 41063240 40539907 40541603 NC_060934.1 NC_000010.11 99.11 True relocation, inconsistency = -302385 40760856 40762243 40541604 40542992 NC_060934.1 NC_000010.11 97.16 True relocation, inconsistency = 676563 41438807 41445105 40542993 40549294 NC_060934.1 NC_000010.11 98.16 True relocation, inconsistency = -1810884 39634222 39639503 40549295 40554580 NC_060934.1 NC_000010.11 95.12 True relocation, inconsistency = 970763 40610527 40612860 40554841 40557179 NC_060934.1 NC_000010.11 98.0 True relocation, inconsistency = -978563 39634298 39639470 40557180 40562357 NC_060934.1 NC_000010.11 95.11 True local misassembly 39639471 39644609 40562697 40567839 NC_060934.1 NC_000010.11 95.57 True relocation, inconsistency = -8484 39639458 39643261 40571172 40574980 NC_060934.1 NC_000010.11 95.33 True relocation, inconsistency = -10184 39638280 39639457 40580183 40581360 NC_060934.1 NC_000010.11 95.16 True local misassembly 39639458 39640363 40581699 40582605 NC_060934.1 NC_000010.11 95.48 True relocation, scaffold gap is present, inconsistency = 79443 39724505 39725970 40587304 40588769 NC_060934.1 NC_000010.11 99.05 True relocation, inconsistency = 811902 40537873 40545475 40588770 40596372 NC_060934.1 NC_000010.11 98.65 True relocation, inconsistency = 119823 40665299 40670189 40596373 40601267 NC_060934.1 NC_000010.11 99.1 True relocation, inconsistency = 825170 41499904 41503686 40605812 40609591 NC_060934.1 NC_000010.11 96.57 True relocation, inconsistency = -177308 41326379 41327766 40609592 40610980 NC_060934.1 NC_000010.11 98.21 True local misassembly 41327767 41328311 40611321 40611865 NC_060934.1 NC_000010.11 98.4 True relocation, inconsistency = -1661390 39666922 39667932 40611866 40612876 NC_060934.1 NC_000010.11 97.63 True local misassembly 39668273 39670684 40612877 40615289 NC_060934.1 NC_000010.11 97.13 True relocation, inconsistency = 1772196 41442881 41444871 40615290 40617280 NC_060934.1 NC_000010.11 98.11 True relocation, inconsistency = -854389 40590483 40594668 40617281 40621463 NC_060934.1 NC_000010.11 97.8 True relocation, inconsistency = -960234 39635940 39639457 40622969 40626491 NC_060934.1 NC_000010.11 95.43 True local misassembly 39640659 39647047 40632108 40638501 NC_060934.1 NC_000010.11 95.19 True local misassembly 39644546 39647309 40640411 40643177 NC_060934.1 NC_000010.11 95.23 True relocation, inconsistency = -14598 39638280 39639520 40648746 40649986 NC_060934.1 NC_000010.11 95.08 True local misassembly 39635727 39639503 40652303 40656081 NC_060934.1 NC_000010.11 95.22 True relocation, inconsistency = 942921 40584418 40585717 40658075 40659374 NC_060934.1 NC_000010.11 98.71 True relocation, inconsistency = -65511 40520207 40527085 40659375 40666255 NC_060934.1 NC_000010.11 98.49 True relocation, inconsistency = 981653 41509337 41511822 40666854 40669340 NC_060934.1 NC_000010.11 98.83 True relocation, inconsistency = 66868 41578933 41581364 40669583 40672017 NC_060934.1 NC_000010.11 97.78 True relocation, inconsistency = -1944938 39637052 39639503 40672643 40675098 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = 1418723 41058487 41060312 40675359 40677183 NC_060934.1 NC_000010.11 96.0 True relocation, inconsistency = -213479 40847070 40847698 40677420 40678049 NC_060934.1 NC_000010.11 97.7 True relocation, inconsistency = -230070 40617629 40621210 40678050 40681630 NC_060934.1 NC_000010.11 98.97 True local misassembly 40621211 40623567 40681971 40684326 NC_060934.1 NC_000010.11 99.15 True relocation, inconsistency = 958566 41582329 41583165 40684522 40685359 NC_060934.1 NC_000010.11 95.47 True relocation, inconsistency = -696429 40886918 40887988 40685541 40686612 NC_060934.1 NC_000010.11 97.85 True relocation, inconsistency = -1019689 39868817 39872083 40687130 40690398 NC_060934.1 NC_000010.11 97.43 True relocation, inconsistency = -236626 39635458 39636925 40690399 40691863 NC_060934.1 NC_000010.11 95.24 True local misassembly 39634298 39640512 40694318 40700539 NC_060934.1 NC_000010.11 95.29 True local misassembly 39636773 39638371 40700869 40702471 NC_060934.1 NC_000010.11 95.38 True local misassembly 39639392 39641682 40702472 40704766 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = 1929666 41571349 41573607 40704767 40707026 NC_060934.1 NC_000010.11 97.89 True relocation, inconsistency = -1906243 39668848 39669858 40708510 40709521 NC_060934.1 NC_000010.11 97.83 True relocation, inconsistency = 1164854 40835847 40836653 40710656 40711463 NC_060934.1 NC_000010.11 95.67 True relocation, inconsistency = 703033 41539897 41540608 40711674 40712385 NC_060934.1 NC_000010.11 98.88 True local misassembly 41540949 41541600 40712386 40713038 NC_060934.1 NC_000010.11 98.78 True relocation, inconsistency = -251973 41289628 41291010 40713039 40714423 NC_060934.1 NC_000010.11 97.24 True relocation, inconsistency = 127101 41418112 41419809 40714424 40716121 NC_060934.1 NC_000010.11 95.83 True relocation, inconsistency = 127927 41547737 41550651 40716122 40719037 NC_060934.1 NC_000010.11 96.93 True relocation, inconsistency = -890002 40660650 40664202 40719038 40722593 NC_060934.1 NC_000010.11 96.65 True fake: not a misassembly (possible transposable element) 27421047 27421791 40723628 40722874 NC_060941.1 NC_000010.11 96.96 True fake: not a misassembly (possible transposable element) 40664383 40669832 40726534 40731988 NC_060934.1 NC_000010.11 97.16 True relocation, inconsistency = 909014 41578847 41581364 40731989 40734507 NC_060934.1 NC_000010.11 96.1 True relocation, inconsistency = -250286 41331079 41331831 40734508 40735260 NC_060934.1 NC_000010.11 98.1 True relocation, inconsistency = -1664782 39667971 39670841 40736182 40739054 NC_060934.1 NC_000010.11 96.69 True relocation, inconsistency = 402248 40083423 40084885 40749388 40750851 NC_060934.1 NC_000010.11 96.72 True local misassembly 40085225 40090153 40750852 40755783 NC_060934.1 NC_000010.11 96.51 True relocation, inconsistency = 1363159 41453366 41455506 40755837 40757976 NC_060934.1 NC_000010.11 97.66 True relocation, inconsistency = 208036 41663543 41664523 40757977 40758958 NC_060934.1 NC_000010.11 95.57 True relocation, inconsistency = -588317 41077155 41081298 40759907 40764053 NC_060934.1 NC_000010.11 98.02 True relocation, inconsistency = -1412610 39668963 39669847 40764328 40765213 NC_060934.1 NC_000010.11 97.52 True local misassembly 39670186 39670841 40765214 40765869 NC_060934.1 NC_000010.11 98.02 True relocation, inconsistency = 98416 39770468 39774265 40767080 40770876 NC_060934.1 NC_000010.11 97.92 True relocation, inconsistency = 1879777 41654515 41657067 40771349 40773903 NC_060934.1 NC_000010.11 96.63 True relocation, inconsistency = -2025379 39634295 39636745 40776510 40778962 NC_060934.1 NC_000010.11 95.84 True local misassembly 39637084 39639503 40778963 40781386 NC_060934.1 NC_000010.11 95.34 True local misassembly 39638526 39639530 40782787 40783792 NC_060934.1 NC_000010.11 95.43 True local misassembly 39634550 39637123 40783900 40786477 NC_060934.1 NC_000010.11 95.03 True relocation, inconsistency = 28847 39668848 39670079 40789355 40790587 NC_060934.1 NC_000010.11 97.49 True local misassembly 39672115 39672910 40790588 40791384 NC_060934.1 NC_000010.11 99.11 True relocation, inconsistency = -36991 39636035 39638186 40791500 40793655 NC_060934.1 NC_000010.11 95.32 True relocation, inconsistency = 901168 40541300 40544766 40795601 40799069 NC_060934.1 NC_000010.11 98.13 True relocation, inconsistency = 153082 40697849 40700935 40799070 40802157 NC_060934.1 NC_000010.11 98.93 True relocation, inconsistency = -799635 39901544 39902969 40802401 40803829 NC_060934.1 NC_000010.11 96.29 True relocation, inconsistency = 1158334 41061544 41064047 40804070 40806573 NC_060934.1 NC_000010.11 99.0 True relocation, inconsistency = 379610 41443868 41444986 40806784 40807904 NC_060934.1 NC_000010.11 97.41 True relocation, inconsistency = -1775926 39669061 39669645 40807905 40808490 NC_060934.1 NC_000010.11 96.48 True local misassembly 39668627 39669909 40808491 40809774 NC_060934.1 NC_000010.11 96.88 True local misassembly 39668891 39669999 40809775 40810884 NC_060934.1 NC_000010.11 97.28 True relocation, inconsistency = 1086474 40756474 40759653 40810885 40814070 NC_060934.1 NC_000010.11 97.02 True relocation, inconsistency = 411337 41171174 41172348 40814254 40815428 NC_060934.1 NC_000010.11 98.13 True relocation, inconsistency = -19686 41152843 41156718 40815609 40819485 NC_060934.1 NC_000010.11 98.48 True relocation, inconsistency = -1488297 39668422 39670077 40819486 40821146 NC_060934.1 NC_000010.11 96.21 True relocation, inconsistency = 1729268 41399613 41400506 40821414 40822307 NC_060934.1 NC_000010.11 97.32 True indel: indel (> 5bp) 41400507 41401143 40822477 40823113 NC_060934.1 NC_000010.11 96.18 True relocation, inconsistency = 47163 41448307 41451432 40823114 40826241 NC_060934.1 NC_000010.11 95.46 True relocation, inconsistency = -1782372 39669061 39670156 40826242 40827338 NC_060934.1 NC_000010.11 97.9 True relocation, inconsistency = 1681076 41351233 41356923 40827339 40833034 NC_060934.1 NC_000010.11 96.31 True relocation, inconsistency = -1045998 40310926 40315227 40833035 40837333 NC_060934.1 NC_000010.11 98.03 True relocation, inconsistency = -493843 39821622 39824720 40837571 40840670 NC_060934.1 NC_000010.11 96.52 True relocation, inconsistency = 1676756 41501543 41502487 40840737 40841682 NC_060934.1 NC_000010.11 97.25 True local misassembly 41502828 41503959 40841683 40842816 NC_060934.1 NC_000010.11 99.47 True relocation, inconsistency = -1834961 39669002 39669973 40842820 40843792 NC_060934.1 NC_000010.11 97.21 True relocation, inconsistency = 200310 39870284 39872994 40843793 40846503 NC_060934.1 NC_000010.11 99.15 True local misassembly 39873335 39874693 40846504 40847862 NC_060934.1 NC_000010.11 98.45 True relocation, inconsistency = -199975 39675095 39675764 40848239 40848908 NC_060934.1 NC_000010.11 95.75 True relocation, inconsistency = 1681416 41357181 41359059 40848909 40850783 NC_060934.1 NC_000010.11 97.98 True relocation, inconsistency = -1724180 39635695 39638158 40851599 40854068 NC_060934.1 NC_000010.11 95.18 True relocation, inconsistency = 2024014 41662173 41662972 40854069 40854864 NC_060934.1 NC_000010.11 95.7 True relocation, inconsistency = -827254 40835719 40837936 40854865 40857070 NC_060934.1 NC_000010.11 95.0 True relocation, inconsistency = -1170962 39668960 39670841 40859056 40860938 NC_060934.1 NC_000010.11 97.77 True relocation, inconsistency = 1096646 40768659 40769447 40862110 40862898 NC_060934.1 NC_000010.11 98.86 True relocation, inconsistency = -1127537 39642139 39644583 40863127 40865571 NC_060934.1 NC_000010.11 95.42 True relocation, inconsistency = -7807 39638298 39639457 40867093 40868253 NC_060934.1 NC_000010.11 95.09 True local misassembly 39639458 39643209 40868592 40872349 NC_060934.1 NC_000010.11 95.42 True local misassembly 39639480 39640316 40872350 40873187 NC_060934.1 NC_000010.11 95.75 True local misassembly 39638619 39640327 40873188 40874898 NC_060934.1 NC_000010.11 95.27 True local misassembly 39644877 39647283 40876056 40878463 NC_060934.1 NC_000010.11 96.01 True relocation, inconsistency = 20370 39668065 39669327 40878875 40880140 NC_060934.1 NC_000010.11 95.72 True local misassembly 39667971 39670848 40880141 40883015 NC_060934.1 NC_000010.11 96.11 True relocation, inconsistency = 25795 39697497 39698247 40883869 40884619 NC_060934.1 NC_000010.11 99.47 True relocation, inconsistency = 1687517 41390448 41391646 40889303 40890501 NC_060934.1 NC_000010.11 97.85 True relocation, inconsistency = -47514 41344133 41347419 40890502 40893794 NC_060934.1 NC_000010.11 96.3 True relocation, inconsistency = 62280 41409700 41410822 40893795 40894917 NC_060934.1 NC_000010.11 96.78 True relocation, inconsistency = -109451 41301372 41305774 40894918 40899319 NC_060934.1 NC_000010.11 96.59 True relocation, inconsistency = -1668864 39638441 39640137 40900850 40902548 NC_060934.1 NC_000010.11 95.83 True fake: not a misassembly (possible transposable element) 41131151 41133678 40902549 40905072 NC_060934.1 NC_000010.11 95.81 True fake: not a misassembly (possible transposable element) 39638632 39639503 40907150 40908022 NC_060934.1 NC_000010.11 95.07 True local misassembly 39636926 39638101 40908495 40909674 NC_060934.1 NC_000010.11 95.51 True local misassembly 39638441 39639503 40909675 40910738 NC_060934.1 NC_000010.11 95.39 True relocation, inconsistency = 1942565 41582329 41584169 40910999 40912840 NC_060934.1 NC_000010.11 97.72 True relocation, inconsistency = -1915748 39668422 39670043 40912841 40914465 NC_060934.1 NC_000010.11 97.24 True relocation, inconsistency = 1382063 41055806 41060327 40918165 40922684 NC_060934.1 NC_000010.11 96.4 True relocation, inconsistency = -1392590 39669974 39670841 40924921 40925788 NC_060934.1 NC_000010.11 97.35 True local misassembly 39669974 39670695 40926960 40927681 NC_060934.1 NC_000010.11 97.78 True relocation, scaffold gap is present, inconsistency = 1789342 41460384 41461952 40928028 40929596 NC_060934.1 NC_000010.11 97.07 True relocation, inconsistency = -1822423 39639530 39640512 40929597 40930580 NC_060934.1 NC_000010.11 95.45 True relocation, inconsistency = 1443160 41084074 41086038 40930982 40932948 NC_060934.1 NC_000010.11 96.64 True relocation, inconsistency = 259299 41347303 41348719 40934914 40936331 NC_060934.1 NC_000010.11 97.39 True local misassembly 41348720 41349581 40936672 40937533 NC_060934.1 NC_000010.11 96.91 True relocation, inconsistency = -471934 40877648 40878986 40937534 40938872 NC_060934.1 NC_000010.11 98.36 True relocation, inconsistency = -1111396 39768054 39768765 40939336 40940047 NC_060934.1 NC_000010.11 96.2 True relocation, inconsistency = 1888265 41657031 41660983 40940048 40944004 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = -301189 41361571 41364644 40945781 40948854 NC_060934.1 NC_000010.11 97.85 True relocation, inconsistency = -1725877 39639420 39640548 40949507 40950636 NC_060934.1 NC_000010.11 95.22 True relocation, inconsistency = 1419063 41059612 41060327 40950637 40951353 NC_060934.1 NC_000010.11 96.09 True relocation, inconsistency = -1390209 39670314 39670841 40951549 40952076 NC_060934.1 NC_000010.11 96.97 True fake: not a misassembly (possible transposable element) 40846916 40847880 40952441 40953406 NC_060934.1 NC_000010.11 96.69 True fake: not a misassembly (possible transposable element) 39668960 39669858 40953590 40954489 NC_060934.1 NC_000010.11 97.22 True relocation, inconsistency = 1687182 41357041 41357830 40954490 40955280 NC_060934.1 NC_000010.11 96.13 True local misassembly 41357831 41360201 40955622 40957995 NC_060934.1 NC_000010.11 97.4 True relocation, inconsistency = 221776 41581978 41585439 40957996 40961460 NC_060934.1 NC_000010.11 96.62 True relocation, inconsistency = 27493 41613131 41616000 40961659 40964531 NC_060934.1 NC_000010.11 96.87 True relocation, inconsistency = -217708 41398293 41400520 40964532 40966760 NC_060934.1 NC_000010.11 97.06 True relocation, inconsistency = -1765924 39635727 39636561 40967891 40968726 NC_060934.1 NC_000010.11 95.93 True relocation, inconsistency = 31904 39668499 39669973 40968760 40970235 NC_060934.1 NC_000010.11 97.47 True relocation, inconsistency = 1346413 41016387 41019326 40970236 40973176 NC_060934.1 NC_000010.11 96.74 True relocation, inconsistency = 325836 41345163 41345947 40973177 40973961 NC_060934.1 NC_000010.11 96.62 True relocation, inconsistency = 49208 41395156 41397508 40973962 40976314 NC_060934.1 NC_000010.11 97.11 True local misassembly 41397509 41398227 40976655 40977373 NC_060934.1 NC_000010.11 97.19 True relocation, inconsistency = -338717 41059511 41062560 40977374 40980424 NC_060934.1 NC_000010.11 96.96 True local misassembly 41058487 41062310 40980425 40984250 NC_060934.1 NC_000010.11 96.66 True relocation, inconsistency = -1395303 39667008 39667688 40984251 40984930 NC_060934.1 NC_000010.11 96.61 True local misassembly 39668829 39669847 40985393 40986412 NC_060934.1 NC_000010.11 97.04 True fake: not a misassembly (possible transposable element) 41571338 41573386 40986413 40988462 NC_060934.1 NC_000010.11 97.41 True fake: not a misassembly (possible transposable element) 39668848 39669909 40989487 40990549 NC_060934.1 NC_000010.11 97.46 True local misassembly 39670248 39670848 40990550 40991150 NC_060934.1 NC_000010.11 97.74 True fake: not a misassembly (possible transposable element) 41577467 41578722 40991187 40992444 NC_060934.1 NC_000010.11 98.41 True fake: not a misassembly (possible transposable element) 39670340 39670848 40993701 40994209 NC_060934.1 NC_000010.11 97.45 True relocation, inconsistency = 1672926 41344133 41346396 40994568 40996832 NC_060934.1 NC_000010.11 96.51 True relocation, inconsistency = -287813 41058885 41062630 40997134 41000881 NC_060934.1 NC_000010.11 97.17 True relocation, inconsistency = 507548 41570179 41571148 41000882 41001851 NC_060934.1 NC_000010.11 98.13 True relocation, inconsistency = -1903527 39667971 39670079 41002201 41004308 NC_060934.1 NC_000010.11 95.12 True relocation, inconsistency = 82810 39756054 39758299 41007473 41009720 NC_060934.1 NC_000010.11 96.84 True relocation, inconsistency = -119805 39638495 39640219 41009721 41011443 NC_060934.1 NC_000010.11 95.06 True relocation, inconsistency = 1912353 41553465 41554886 41012336 41013760 NC_060934.1 NC_000010.11 97.12 True relocation, inconsistency = 23421 41578922 41582422 41014375 41017880 NC_060934.1 NC_000010.11 96.32 True relocation, inconsistency = -1912355 39670068 39670850 41017881 41018661 NC_060934.1 NC_000010.11 96.69 True relocation, inconsistency = 1412610 41083489 41086031 41018690 41021235 NC_060934.1 NC_000010.11 97.01 True relocation, inconsistency = -1446552 39639480 39640223 41021236 41021977 NC_060934.1 NC_000010.11 95.86 True local misassembly 39640559 39644303 41021978 41025725 NC_060934.1 NC_000010.11 95.09 True relocation, inconsistency = 828878 40473182 40475123 41025726 41027664 NC_060934.1 NC_000010.11 96.17 True local misassembly 40475462 40476818 41027665 41029019 NC_060934.1 NC_000010.11 96.09 True local misassembly 40476819 40479374 41029700 41032257 NC_060934.1 NC_000010.11 96.83 True local misassembly 40479713 40481742 41032258 41034289 NC_060934.1 NC_000010.11 97.24 True relocation, inconsistency = 862382 41344135 41347381 41034300 41037548 NC_060934.1 NC_000010.11 95.79 True relocation, inconsistency = -1525243 39822139 39823120 41037549 41038528 NC_060934.1 NC_000010.11 96.67 True relocation, inconsistency = -184348 39640655 39641765 41040411 41041525 NC_060934.1 NC_000010.11 95.16 True relocation, inconsistency = 16635 39658461 39662327 41041586 41045451 NC_060934.1 NC_000010.11 95.61 True relocation, inconsistency = -26135 39636193 39637233 41045452 41046493 NC_060934.1 NC_000010.11 95.62 True local misassembly 39639458 39640136 41048718 41049397 NC_060934.1 NC_000010.11 96.03 True relocation, inconsistency = 458925 40099272 40104055 41049608 41054392 NC_060934.1 NC_000010.11 96.57 True relocation, inconsistency = 1532514 41636634 41638785 41054457 41056608 NC_060934.1 NC_000010.11 96.79 True relocation, inconsistency = -1971409 39667971 39669508 41057203 41058741 NC_060934.1 NC_000010.11 97.01 True local misassembly 39668508 39669973 41058758 41060225 NC_060934.1 NC_000010.11 97.59 True relocation, inconsistency = 70595 39740569 39741957 41060226 41061617 NC_060934.1 NC_000010.11 98.23 True relocation, inconsistency = 1093581 40835539 40837936 41061618 41064017 NC_060934.1 NC_000010.11 95.83 True local misassembly 40834491 40837934 41064982 41068427 NC_060934.1 NC_000010.11 97.45 True relocation, inconsistency = 745465 41583400 41585173 41068428 41070202 NC_060934.1 NC_000010.11 98.06 True relocation, inconsistency = -572393 41014025 41019495 41071447 41076921 NC_060934.1 NC_000010.11 96.04 True relocation, inconsistency = -1196692 39823121 39824886 41077239 41079004 NC_060934.1 NC_000010.11 98.81 True relocation, inconsistency = -185363 39639524 39640170 41079005 41079651 NC_060934.1 NC_000010.11 95.56 True relocation, inconsistency = 1982275 41623267 41624812 41080473 41082019 NC_060934.1 NC_000010.11 97.67 True relocation, inconsistency = -1955802 39669011 39669973 41082020 41082982 NC_060934.1 NC_000010.11 96.25 True relocation, inconsistency = 1428901 41098875 41101277 41082983 41085390 NC_060934.1 NC_000010.11 97.76 True local misassembly 41101278 41102031 41085731 41086484 NC_060934.1 NC_000010.11 96.42 True relocation, inconsistency = -325463 40777510 40780694 41087426 41090611 NC_060934.1 NC_000010.11 98.05 True relocation, inconsistency = 53616 40834517 40837936 41090818 41094239 NC_060934.1 NC_000010.11 96.38 True relocation, inconsistency = 693186 41531123 41532894 41094240 41096013 NC_060934.1 NC_000010.11 95.3 True relocation, inconsistency = -1898089 39635684 39637123 41096892 41098332 NC_060934.1 NC_000010.11 95.98 True relocation, inconsistency = 1252920 40892374 40894486 41100663 41102775 NC_060934.1 NC_000010.11 96.12 True relocation, inconsistency = -1225426 39669061 39670025 41102776 41103741 NC_060934.1 NC_000010.11 97.56 True fake: not a misassembly (possible transposable element) 41439919 41442637 41103815 41106534 NC_060934.1 NC_000010.11 97.46 True fake: not a misassembly (possible transposable element) 39668960 39670841 41106748 41108630 NC_060934.1 NC_000010.11 97.77 True relocation, inconsistency = 600786 40272838 40275452 41109841 41112456 NC_060934.1 NC_000010.11 97.71 True relocation, inconsistency = -631683 39644546 39646762 41113233 41115453 NC_060934.1 NC_000010.11 95.59 True relocation, inconsistency = -18324 39636938 39638187 41123953 41125206 NC_060934.1 NC_000010.11 95.22 True relocation, inconsistency = 1756080 41395398 41398245 41126337 41129186 NC_060934.1 NC_000010.11 95.89 True relocation, inconsistency = 130133 41528804 41533839 41129612 41134652 NC_060934.1 NC_000010.11 96.53 True relocation, inconsistency = -176628 41357212 41359193 41134653 41136635 NC_060934.1 NC_000010.11 96.78 True relocation, inconsistency = 224154 41583348 41585439 41136636 41138729 NC_060934.1 NC_000010.11 96.66 True relocation, inconsistency = -834368 40751072 40751919 41138730 41139578 NC_060934.1 NC_000010.11 96.45 True relocation, inconsistency = -1112611 39639420 39640136 41139690 41140407 NC_060934.1 NC_000010.11 96.01 True local misassembly 39635727 39636925 41140408 41141607 NC_060934.1 NC_000010.11 95.33 True local misassembly 39634678 39635800 41142754 41143878 NC_060934.1 NC_000010.11 95.47 True local misassembly 39640432 39641574 41144441 41145585 NC_060934.1 NC_000010.11 95.46 True local misassembly 39635684 39636745 41146478 41147541 NC_060934.1 NC_000010.11 95.68 True local misassembly 39637084 39638101 41147542 41148563 NC_060934.1 NC_000010.11 95.21 True relocation, inconsistency = 590948 40230067 40234536 41149581 41154053 NC_060934.1 NC_000010.11 97.36 True relocation, inconsistency = -564475 39670062 39670848 41154054 41154840 NC_060934.1 NC_000010.11 96.57 True relocation, inconsistency = 1666479 41337505 41339902 41155018 41157413 NC_060934.1 NC_000010.11 96.33 True relocation, inconsistency = -1703481 39638619 39639457 41159611 41160450 NC_060934.1 NC_000010.11 95.36 True local misassembly 39639458 39640442 41160789 41161774 NC_060934.1 NC_000010.11 95.37 True relocation, inconsistency = 1820389 41460832 41463261 41161775 41164207 NC_060934.1 NC_000010.11 97.53 True relocation, inconsistency = -578328 40885771 40889372 41165045 41168650 NC_060934.1 NC_000010.11 95.37 True relocation, inconsistency = 631255 41524493 41526689 41172516 41174712 NC_060934.1 NC_000010.11 96.95 True relocation, inconsistency = -173234 41353795 41358939 41175052 41180199 NC_060934.1 NC_000010.11 96.21 True relocation, inconsistency = -1688882 39670058 39670848 41180200 41180991 NC_060934.1 NC_000010.11 96.46 True relocation, inconsistency = 1097327 40768659 40769495 41181475 41182311 NC_060934.1 NC_000010.11 98.21 True relocation, inconsistency = 626850 41396526 41397575 41182492 41183542 NC_060934.1 NC_000010.11 96.0 True local misassembly 41397576 41398096 41183883 41184403 NC_060934.1 NC_000010.11 97.89 True local misassembly 41398435 41399486 41184404 41185456 NC_060934.1 NC_000010.11 95.54 True relocation, inconsistency = -1576831 39823121 39824437 41185922 41187238 NC_060934.1 NC_000010.11 98.87 True relocation, inconsistency = -74716 39749722 39753349 41187239 41190866 NC_060934.1 NC_000010.11 96.75 True relocation, inconsistency = -112684 39640666 39641868 41190867 41192071 NC_060934.1 NC_000010.11 95.07 True relocation, inconsistency = -7124 39638441 39639495 41195768 41196825 NC_060934.1 NC_000010.11 95.75 True local misassembly 39640432 39642905 41197762 41200235 NC_060934.1 NC_000010.11 95.32 True local misassembly 39643868 39645659 41207656 41209450 NC_060934.1 NC_000010.11 95.55 True relocation, inconsistency = -15264 39635907 39636936 41214962 41215992 NC_060934.1 NC_000010.11 95.64 True relocation, inconsistency = 37670 39674907 39675746 41216293 41217132 NC_060934.1 NC_000010.11 99.04 True relocation, inconsistency = 1698725 41374472 41375419 41217133 41218080 NC_060934.1 NC_000010.11 98.42 True relocation, inconsistency = -1707552 39668682 39670077 41218895 41220291 NC_060934.1 NC_000010.11 95.35 True local misassembly 39669061 39669847 41220292 41221079 NC_060934.1 NC_000010.11 95.64 True relocation, inconsistency = -33941 39635907 39638101 41221080 41223279 NC_060934.1 NC_000010.11 95.23 True local misassembly 39638441 39639457 41223280 41224296 NC_060934.1 NC_000010.11 95.38 True local misassembly 39639458 39640327 41224637 41225507 NC_060934.1 NC_000010.11 95.75 True fake: not a misassembly (possible transposable element) 39666952 39668028 41226336 41227413 NC_060934.1 NC_000010.11 97.31 True fake: not a misassembly (possible transposable element) 39639420 39640514 41228675 41229770 NC_060934.1 NC_000010.11 95.71 True local misassembly 39635730 39636720 41230414 41231405 NC_060934.1 NC_000010.11 96.05 True fake: not a misassembly (possible transposable element) 41610849 41612420 41231406 41232977 NC_060934.1 NC_000010.11 98.73 True fake: not a misassembly (possible transposable element) 39639348 39639930 41234378 41234960 NC_060934.1 NC_000010.11 96.57 True relocation, inconsistency = 25457 39668829 39669763 41238402 41239338 NC_060934.1 NC_000010.11 97.55 True relocation, inconsistency = 1492366 41166078 41167543 41243287 41244753 NC_060934.1 NC_000010.11 98.02 True relocation, inconsistency = -1499502 39668960 39669624 41245672 41246337 NC_060934.1 NC_000010.11 96.86 True relocation, inconsistency = -29193 39640432 39641682 41246338 41247591 NC_060934.1 NC_000010.11 95.22 True local misassembly 39646093 39647319 41247592 41248819 NC_060934.1 NC_000010.11 96.77 True relocation, inconsistency = 1353884 41002163 41004275 41249779 41251890 NC_060934.1 NC_000010.11 96.36 True relocation, inconsistency = -1364406 39640443 39641671 41252464 41253695 NC_060934.1 NC_000010.11 95.25 True relocation, inconsistency = 1702461 41344133 41345151 41253696 41254715 NC_060934.1 NC_000010.11 96.05 True relocation, inconsistency = 185789 41530941 41533913 41254716 41257690 NC_060934.1 NC_000010.11 96.81 True relocation, inconsistency = -1896398 39638441 39639495 41258616 41259671 NC_060934.1 NC_000010.11 95.64 True relocation, inconsistency = 1416685 41056587 41061649 41260078 41265140 NC_060934.1 NC_000010.11 96.05 True relocation, inconsistency = -1335567 39726083 39727664 41265141 41266721 NC_060934.1 NC_000010.11 95.32 True relocation, inconsistency = 1786424 41514089 41516169 41266722 41268803 NC_060934.1 NC_000010.11 96.89 True relocation, inconsistency = -172217 41343953 41347419 41268804 41272272 NC_060934.1 NC_000010.11 95.62 True relocation, inconsistency = -1703145 39645880 39646581 41273878 41274579 NC_060934.1 NC_000010.11 96.83 True fake: not a misassembly (possible transposable element) 41428631 41429987 41274580 41275936 NC_060934.1 NC_000010.11 98.01 True fake: not a misassembly (possible transposable element) 39644546 39647283 41275937 41278677 NC_060934.1 NC_000010.11 95.0 True relocation, inconsistency = 83501 39730785 39731440 41278678 41279334 NC_060934.1 NC_000010.11 96.18 True relocation, inconsistency = 1708045 41439486 41440461 41279335 41280310 NC_060934.1 NC_000010.11 97.97 True relocation, inconsistency = -1804778 39635684 39638182 41280311 41282814 NC_060934.1 NC_000010.11 95.01 True local misassembly 39639317 39640136 41283950 41284770 NC_060934.1 NC_000010.11 95.74 True local misassembly 39640475 39641868 41284771 41286166 NC_060934.1 NC_000010.11 95.27 True local misassembly 39638441 39639495 41286812 41287866 NC_060934.1 NC_000010.11 95.17 True fake: not a misassembly (possible transposable element) 41411661 41413069 41289867 41291274 NC_060934.1 NC_000010.11 96.38 True fake: not a misassembly (possible transposable element) 39639317 39640546 41291425 41292655 NC_060934.1 NC_000010.11 95.45 True local misassembly 39639317 39640136 41293462 41294282 NC_060934.1 NC_000010.11 95.62 True relocation, inconsistency = 25797 39667260 39667932 41295609 41296281 NC_060934.1 NC_000010.11 98.37 True relocation, inconsistency = -33600 39635684 39636745 41297633 41298695 NC_060934.1 NC_000010.11 96.24 True local misassembly 39637084 39638373 41298696 41299989 NC_060934.1 NC_000010.11 95.67 True relocation, inconsistency = 1707893 41346299 41348641 41300022 41302365 NC_060934.1 NC_000010.11 97.4 True relocation, inconsistency = -1679716 39668926 39669641 41302366 41303082 NC_060934.1 NC_000010.11 96.92 True relocation, inconsistency = 145303 39814945 39816085 41303083 41304223 NC_060934.1 NC_000010.11 98.07 True relocation, inconsistency = -49261 39767035 39768955 41304434 41306355 NC_060934.1 NC_000010.11 97.45 True relocation, inconsistency = 1587068 41356850 41359059 41307182 41309395 NC_060934.1 NC_000010.11 97.38 True relocation, inconsistency = -1688883 39670186 39670873 41309405 41310093 NC_060934.1 NC_000010.11 98.69 True fake: not a misassembly (possible transposable element) 40717655 40718210 41310094 41310649 NC_060934.1 NC_000010.11 97.87 True fake: not a misassembly (possible transposable element) 39668627 39670841 41312258 41314474 NC_060934.1 NC_000010.11 95.99 True relocation, inconsistency = 1056617 40728321 40729064 41315337 41316080 NC_060934.1 NC_000010.11 95.43 True local misassembly 40729985 40731055 41317000 41318073 NC_060934.1 NC_000010.11 95.9 True relocation, inconsistency = -1063065 39668627 39669641 41318710 41319723 NC_060934.1 NC_000010.11 95.45 True relocation, inconsistency = 1165871 40835513 40837865 41319724 41322077 NC_060934.1 NC_000010.11 97.11 True relocation, inconsistency = 507397 41345280 41347417 41322095 41324234 NC_060934.1 NC_000010.11 95.85 True relocation, inconsistency = -1716713 39634298 39635387 41327828 41328920 NC_060934.1 NC_000010.11 95.24 True fake: not a misassembly (possible transposable element) 40846736 40848964 41329941 41332171 NC_060934.1 NC_000010.11 95.47 True fake: not a misassembly (possible transposable element) 39639317 39640114 41335236 41336035 NC_060934.1 NC_000010.11 95.56 True relocation, inconsistency = 28512 39668627 39669973 41336036 41337383 NC_060934.1 NC_000010.11 95.94 True fake: not a misassembly (possible transposable element) 41357158 41359263 41337384 41339491 NC_060934.1 NC_000010.11 96.2 True fake: not a misassembly (possible transposable element) 39669974 39670842 41340102 41340970 NC_060934.1 NC_000010.11 97.12 True relocation, inconsistency = 1387155 41058487 41062245 41341460 41345219 NC_060934.1 NC_000010.11 96.52 True relocation, inconsistency = -1241511 39820735 39822755 41345220 41347240 NC_060934.1 NC_000010.11 95.0 True relocation, inconsistency = 1521171 41343927 41347060 41347241 41350376 NC_060934.1 NC_000010.11 95.92 True relocation, inconsistency = 55151 41406202 41408096 41354367 41356264 NC_060934.1 NC_000010.11 95.89 True relocation, inconsistency = -1739280 39668829 39670077 41356277 41357526 NC_060934.1 NC_000010.11 97.44 True relocation, inconsistency = -30548 39639530 39640170 41357527 41358168 NC_060934.1 NC_000010.11 96.38 True relocation, inconsistency = 1153329 40793773 40794663 41358442 41359333 NC_060934.1 NC_000010.11 97.04 True relocation, inconsistency = 481257 41275921 41278976 41359334 41362392 NC_060934.1 NC_000010.11 96.44 True local misassembly 41279315 41280121 41362393 41363200 NC_060934.1 NC_000010.11 97.26 True relocation, inconsistency = -1622029 39658093 39659505 41363201 41364614 NC_060934.1 NC_000010.11 96.39 True relocation, inconsistency = 1376965 41037095 41043634 41365239 41371777 NC_060934.1 NC_000010.11 96.68 True relocation, inconsistency = 14600 41058235 41062445 41371778 41375988 NC_060934.1 NC_000010.11 96.66 True relocation, inconsistency = -1431281 39637085 39638279 41381909 41383105 NC_060934.1 NC_000010.11 95.07 True local misassembly 39639458 39640136 41384290 41384969 NC_060934.1 NC_000010.11 96.22 True relocation, inconsistency = 1399366 41039503 41043769 41384970 41389240 NC_060934.1 NC_000010.11 96.32 True relocation, inconsistency = -661455 40382315 40383320 41389241 41390248 NC_060934.1 NC_000010.11 96.97 True local misassembly 40383659 40384739 41390249 41391329 NC_060934.1 NC_000010.11 97.5 True relocation, inconsistency = -745378 39639426 39640093 41391394 41392060 NC_060934.1 NC_000010.11 95.92 True local misassembly 39637041 39638101 41392061 41393124 NC_060934.1 NC_000010.11 95.21 True local misassembly 39638441 39639414 41393125 41394099 NC_060934.1 NC_000010.11 95.34 True relocation, inconsistency = 1755741 41395156 41397428 41394100 41396375 NC_060934.1 NC_000010.11 96.7 True local misassembly 41398212 41399635 41397159 41398584 NC_060934.1 NC_000010.11 95.93 True relocation, inconsistency = -1760156 39639480 39640136 41398585 41399242 NC_060934.1 NC_000010.11 95.66 True relocation, inconsistency = 1093610 40735073 40736143 41400569 41401640 NC_060934.1 NC_000010.11 96.46 True relocation, inconsistency = -1101074 39635727 39636841 41402298 41403413 NC_060934.1 NC_000010.11 95.07 True local misassembly 39641927 39642849 41403414 41404336 NC_060934.1 NC_000010.11 95.62 True fake: not a misassembly (possible transposable element) 39820744 39823143 41404337 41406737 NC_060934.1 NC_000010.11 96.79 True fake: not a misassembly (possible transposable element) 39641833 39642924 41407398 41408489 NC_060934.1 NC_000010.11 95.43 True relocation, inconsistency = 1447235 41091253 41092087 41409583 41410417 NC_060934.1 NC_000010.11 97.6 True local misassembly 41092428 41093081 41410418 41411073 NC_060934.1 NC_000010.11 96.36 True relocation, inconsistency = -521279 40571803 40573992 41411074 41413263 NC_060934.1 NC_000010.11 95.72 True relocation, inconsistency = 192760 40768659 40770450 41415170 41416961 NC_060934.1 NC_000010.11 97.38 True relocation, inconsistency = -1133305 39637146 39638099 41416962 41417919 NC_060934.1 NC_000010.11 95.12 True relocation, inconsistency = 1401403 41039503 41041960 41417920 41420376 NC_060934.1 NC_000010.11 95.88 True relocation, inconsistency = 14600 41056561 41061331 41420377 41425151 NC_060934.1 NC_000010.11 96.17 True relocation, inconsistency = 295276 41356608 41358939 41425152 41427485 NC_060934.1 NC_000010.11 96.52 True relocation, inconsistency = -1720449 39638491 39639495 41427486 41428492 NC_060934.1 NC_000010.11 95.18 True local misassembly 39641833 39643091 41432537 41433798 NC_060934.1 NC_000010.11 95.56 True relocation, inconsistency = 176878 39820721 39821888 41434550 41435720 NC_060934.1 NC_000010.11 97.18 True relocation, inconsistency = 1574457 41396526 41397311 41435901 41436687 NC_060934.1 NC_000010.11 96.7 True relocation, inconsistency = -1756426 39642011 39643091 41437813 41438893 NC_060934.1 NC_000010.11 95.1 True local misassembly 39639360 39640170 41438894 41439705 NC_060934.1 NC_000010.11 95.44 True relocation, inconsistency = 1819028 41460384 41461848 41440891 41442354 NC_060934.1 NC_000010.11 95.92 True relocation, inconsistency = -404381 41057468 41060327 41442355 41445217 NC_060934.1 NC_000010.11 96.89 True relocation, inconsistency = -550137 40512000 40517210 41447027 41452245 NC_060934.1 NC_000010.11 96.34 True local misassembly 40517549 40519034 41452246 41453731 NC_060934.1 NC_000010.11 96.23 True relocation, inconsistency = -880131 39641915 39642806 41456743 41457635 NC_060934.1 NC_000010.11 96.57 True local misassembly 39637041 39638101 41457636 41458700 NC_060934.1 NC_000010.11 95.21 True local misassembly 39638441 39639503 41458701 41459763 NC_060934.1 NC_000010.11 95.77 True local misassembly 39639426 39640136 41460024 41460735 NC_060934.1 NC_000010.11 95.93 True local misassembly 39640475 39641469 41460736 41461732 NC_060934.1 NC_000010.11 95.44 True relocation, inconsistency = 27157 39668627 39669645 41461733 41462751 NC_060934.1 NC_000010.11 97.45 True local misassembly 39668627 39670077 41462752 41464204 NC_060934.1 NC_000010.11 96.49 True local misassembly 39669061 39669847 41464205 41464992 NC_060934.1 NC_000010.11 96.95 True local misassembly 39668829 39669571 41464993 41465736 NC_060934.1 NC_000010.11 96.65 True fake: not a misassembly (possible transposable element) 41661679 41662983 41465737 41467043 NC_060934.1 NC_000010.11 96.79 True fake: not a misassembly (possible transposable element) 39670197 39670841 41467044 41467688 NC_060934.1 NC_000010.11 98.02 True relocation, inconsistency = -33610 39638526 39639459 41468983 41469917 NC_060934.1 NC_000010.11 95.06 True local misassembly 39641833 39642905 41469918 41470991 NC_060934.1 NC_000010.11 97.21 True local misassembly 39638495 39639414 41470992 41471911 NC_060934.1 NC_000010.11 95.18 True relocation, inconsistency = 1133645 40773060 40775136 41471912 41473989 NC_060934.1 NC_000010.11 97.16 True relocation, inconsistency = 738991 41514145 41516001 41474007 41475863 NC_060934.1 NC_000010.11 97.69 True relocation, inconsistency = -1847519 39668498 39669677 41475879 41477059 NC_060934.1 NC_000010.11 96.27 True relocation, inconsistency = 26471 39696149 39697348 41477060 41478261 NC_060934.1 NC_000010.11 97.92 True relocation, inconsistency = 1137365 40835847 40837544 41479395 41481093 NC_060934.1 NC_000010.11 95.75 True relocation, inconsistency = 557622 41395167 41397711 41481094 41483637 NC_060934.1 NC_000010.11 95.96 True relocation, inconsistency = 223143 41621058 41623115 41483841 41485898 NC_060934.1 NC_000010.11 95.87 True relocation, inconsistency = -1990085 39635571 39636936 41488439 41489804 NC_060934.1 NC_000010.11 95.98 True local misassembly 39639317 39640136 41489813 41490633 NC_060934.1 NC_000010.11 95.37 True local misassembly 39642011 39643091 41491831 41492912 NC_060934.1 NC_000010.11 96.4 True relocation, inconsistency = -7470 39638441 39639930 41495732 41497224 NC_060934.1 NC_000010.11 95.85 True relocation, scaffold gap is present, inconsistency = 2036117 41676364 41726219 41497541 41545713 NC_060934.1 NC_000010.11 95.1 True relocation, scaffold gap is present, inconsistency = 54352 41782177 41783458 41547319 41548602 NC_060934.1 NC_000010.11 96.18 True local misassembly 41783798 41786936 41548603 41551741 NC_060934.1 NC_000010.11 95.95 True local misassembly 41787277 41789908 41551742 41554373 NC_060934.1 NC_000010.11 97.38 True local misassembly 41790249 41791606 41554374 41555731 NC_060934.1 NC_000010.11 97.13 True local misassembly 41791947 41793222 41555732 41557008 NC_060934.1 NC_000010.11 96.16 True local misassembly 41793562 41796108 41557009 41559558 NC_060934.1 NC_000010.11 96.35 True local misassembly 41796449 41804523 41559559 41567637 NC_060934.1 NC_000010.11 96.3 True local misassembly 41804864 41806086 41567638 41568860 NC_060934.1 NC_000010.11 96.08 True local misassembly 41808338 41813576 41569075 41574314 NC_060934.1 NC_000010.11 97.16 True local misassembly 41814689 41819672 41574407 41579391 NC_060934.1 NC_000010.11 96.81 True local misassembly 41821031 41822423 41579392 41580782 NC_060934.1 NC_000010.11 97.42 True local misassembly 41822763 41825148 41580783 41583170 NC_060934.1 NC_000010.11 96.86 True local misassembly 41825829 41831630 41583171 41588972 NC_060934.1 NC_000010.11 96.85 True local misassembly 41832308 41833287 41588973 41589953 NC_060934.1 NC_000010.11 96.94 True local misassembly 41833628 41837195 41589954 41593521 NC_060934.1 NC_000010.11 97.25 True relocation, scaffold gap is present, inconsistency = -27347 41909849 42085223 41693522 41865808 NC_060934.1 NC_000010.11 97.68 True relocation, inconsistency = 54216 42142993 42144296 41869362 41870640 NC_060934.1 NC_000010.11 96.17 True indel: indel (> 5bp) 42144342 42153113 41870641 41879358 NC_060934.1 NC_000010.11 97.36 True local misassembly 42153187 42153773 41879680 41880251 NC_060934.1 NC_000010.11 96.42 True indel: indel (> 5bp) 42153774 42154491 41880277 41880980 NC_060934.1 NC_000010.11 96.38 True indel: indel (> 5bp) 42154522 42155110 41880981 41881549 NC_060934.1 NC_000010.11 95.08 True relocation, inconsistency = 39413 42194772 42198661 41881798 41885687 NC_060934.1 NC_000010.11 97.99 True indel: indel (> 5bp) 42198662 42203525 41885728 41890597 NC_060934.1 NC_000010.11 97.6 True local misassembly 42204360 42206091 41891312 41893038 NC_060934.1 NC_000010.11 97.46 True indel: indel (> 5bp) 42206132 42206688 41893039 41893600 NC_060934.1 NC_000010.11 98.4 True indel: indel (> 5bp) 42206744 42207321 41893601 41894183 NC_060934.1 NC_000010.11 98.28 True indel: indel (> 5bp) 42207382 42208515 41894184 41895312 NC_060934.1 NC_000010.11 98.5 True relocation, inconsistency = 7937 42216878 42223438 41895738 41902319 NC_060934.1 NC_000010.11 97.71 True indel: indel (> 5bp) 42223509 42226122 41902320 41904979 NC_060934.1 NC_000010.11 96.8 True local misassembly 42227650 42232128 41905098 41909634 NC_060934.1 NC_000010.11 97.11 True relocation, inconsistency = 45020 42277677 42278452 41910163 41910933 NC_060934.1 NC_000010.11 98.45 True indel: indel (> 5bp) 42278488 42279586 41910934 41912047 NC_060934.1 NC_000010.11 97.31 True local misassembly 42282628 42284744 41912078 41914199 NC_060934.1 NC_000010.11 98.44 True indel: indel (> 5bp) 42284770 42285460 41914200 41914904 NC_060934.1 NC_000010.11 95.46 True relocation, scaffold gap is present, inconsistency = 505475 42942297 47560424 42066266 46674062 NC_060934.1 NC_000010.11 99.42 True local misassembly 47562319 48671598 46674309 47780188 NC_060934.1 NC_000010.11 99.5 True relocation, scaffold gap is present, inconsistency = -42554 48719250 52707147 47870394 51858157 NC_060934.1 NC_000010.11 99.69 True indel: indel (> 5bp) 52707473 58352130 51858400 57497185 NC_060934.1 NC_000010.11 99.49 True local misassembly 58352402 65945579 57498224 65087502 NC_060934.1 NC_000010.11 99.66 True local misassembly 65947204 66383607 65087656 65524270 NC_060934.1 NC_000010.11 99.54 True local misassembly 66387864 75467145 65524707 74595672 NC_060934.1 NC_000010.11 99.65 True indel: stretch of mismatches 75467246 92326942 74595773 91443587 NC_060934.1 NC_000010.11 99.64 True fake: not a misassembly (possible transposable element) 92326943 92329384 91446029 91443588 NC_060934.1 NC_000010.11 100.0 True fake: not a misassembly (possible transposable element) 92329385 112322203 91446030 111430724 NC_060934.1 NC_000010.11 99.57 True local misassembly 112322982 118292040 111431660 117397592 NC_060934.1 NC_000010.11 99.68 True indel: indel (> 5bp) 118292115 120290092 117397694 119394250 NC_060934.1 NC_000010.11 99.68 True local misassembly 120290253 124998378 119394618 124121200 NC_060934.1 NC_000010.11 99.13 True fake: scaffold gap size wrong estimation (local) 124998635 128609643 124121503 127714373 NC_060934.1 NC_000010.11 99.21 True local misassembly 128610853 134636744 127714441 133685303 NC_060934.1 NC_000010.11 98.2 True fake: scaffold gap size wrong estimation (local) 134692007 134706832 133740621 133755432 NC_060934.1 NC_000010.11 99.81 True relocation, inconsistency = 13240 134720073 134728619 133755433 133763968 NC_060934.1 NC_000010.11 99.81 True local misassembly 134731736 134732979 133764153 133765396 NC_060934.1 NC_000010.11 100.0 True indel: indel (> 5bp) 134733034 134754097 133765397 133786458 NC_060934.1 NC_000010.11 99.98 True local misassembly 134754330 134755100 133786459 133787229 NC_060934.1 NC_000010.11 100.0 True CONTIG NC_000010.11 133797422 misassembled 77409 87953 60001 70548 NC_060935.1 NC_000011.10 98.81 True relocation, inconsistency = 9073 97222 120083 70744 93607 NC_060935.1 NC_000011.10 99.64 True local misassembly 120084 139430 93929 113286 NC_060935.1 NC_000011.10 99.74 True indel: indel (> 5bp) 139455 201930 113287 175751 NC_060935.1 NC_000011.10 99.78 True indel: indel (> 5bp) 202015 206150 175752 179894 NC_060935.1 NC_000011.10 99.57 True relocation, inconsistency = 14674 220825 227290 179895 186359 NC_060935.1 NC_000011.10 99.64 True local misassembly 227291 235632 186605 194939 NC_060935.1 NC_000011.10 99.6 True indel: indel (> 5bp) 235743 236917 194940 196113 NC_060935.1 NC_000011.10 99.4 True local misassembly 237689 248537 196511 207359 NC_060935.1 NC_000011.10 99.78 True indel: indel (> 5bp) 248559 264983 207360 223786 NC_060935.1 NC_000011.10 99.82 True local misassembly 264984 290556 224003 249573 NC_060935.1 NC_000011.10 99.59 True indel: indel (> 5bp) 290557 308312 249622 267411 NC_060935.1 NC_000011.10 99.64 True local misassembly 308674 335692 267505 294512 NC_060935.1 NC_000011.10 99.72 True indel: indel (> 5bp) 335730 353070 294513 311836 NC_060935.1 NC_000011.10 99.67 True local misassembly 359179 4345153 317945 4280072 NC_060935.1 NC_000011.10 95.48 True local misassembly 4351165 29126301 4285891 28985655 NC_060935.1 NC_000011.10 99.31 True local misassembly 29126394 49892160 28991342 49714844 NC_060935.1 NC_000011.10 99.49 True local misassembly 49905512 50331654 49728197 50154872 NC_060935.1 NC_000011.10 99.39 True relocation, inconsistency = -41092 50331655 50501113 50324229 50154873 NC_060935.1 NC_000011.10 99.67 True inversion 50501114 51001001 50324230 50821348 NC_060935.1 NC_000011.10 98.73 True relocation, scaffold gap is present, inconsistency = -249742 51008260 51010324 51078349 51080413 NC_060935.1 NC_000011.10 98.92 True local misassembly 51007589 51010844 51080414 51083669 NC_060935.1 NC_000011.10 98.86 True local misassembly 51008109 51010665 51083670 51086226 NC_060935.1 NC_000011.10 99.49 True local misassembly 51007589 51010844 51086227 51089482 NC_060935.1 NC_000011.10 98.86 True local misassembly 51008109 51008943 51089483 51090317 NC_060935.1 NC_000011.10 99.26 True relocation, scaffold gap is present, inconsistency = 824835 51833879 51843202 51090418 51099747 NC_060935.1 NC_000011.10 97.75 True relocation, inconsistency = 2065509 53908712 53916253 51099748 51107290 NC_060935.1 NC_000011.10 97.21 True relocation, inconsistency = -1226651 52689824 52702322 51107512 51120015 NC_060935.1 NC_000011.10 97.66 True relocation, inconsistency = 1785733 54488056 54488616 51120016 51120576 NC_060935.1 NC_000011.10 98.37 True relocation, scaffold gap is present, inconsistency = -1296232 53192542 53193869 51120734 51122061 NC_060935.1 NC_000011.10 97.55 True relocation, inconsistency = -1783284 51410586 51420786 51122062 51132266 NC_060935.1 NC_000011.10 97.66 True relocation, inconsistency = 2661306 54082093 54103707 51132267 51153890 NC_060935.1 NC_000011.10 97.45 True relocation, inconsistency = -137690 53966018 53976674 51153891 51164550 NC_060935.1 NC_000011.10 97.42 True relocation, inconsistency = -1151332 52825343 52840321 51164551 51179531 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = -195154 52645168 52663726 51179532 51198093 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = 418498 53082697 53097518 51198566 51213398 NC_060935.1 NC_000011.10 97.02 True relocation, inconsistency = -1482580 51614939 51633677 51213399 51232136 NC_060935.1 NC_000011.10 98.12 True relocation, inconsistency = 1485811 53119489 53131115 51232137 51243766 NC_060935.1 NC_000011.10 97.83 True relocation, inconsistency = -170131 52960986 52973597 51243768 51256380 NC_060935.1 NC_000011.10 97.89 True relocation, inconsistency = -50146 52923452 52943899 51256381 51276835 NC_060935.1 NC_000011.10 97.88 True relocation, inconsistency = 719281 53663181 53675506 51276836 51289163 NC_060935.1 NC_000011.10 97.95 True relocation, inconsistency = -1493201 52182306 52195619 51289164 51302487 NC_060935.1 NC_000011.10 98.24 True relocation, inconsistency = 1036015 53231635 53253017 51302488 51323870 NC_060935.1 NC_000011.10 98.08 True relocation, inconsistency = 788949 54041967 54052815 51323871 51334722 NC_060935.1 NC_000011.10 97.65 True relocation, inconsistency = -2364522 51688294 51715768 51334723 51362198 NC_060935.1 NC_000011.10 98.2 True relocation, inconsistency = 1557554 53273323 53281959 51362199 51370836 NC_060935.1 NC_000011.10 98.08 True local misassembly 53282810 53290409 51370837 51378443 NC_060935.1 NC_000011.10 98.03 True relocation, inconsistency = -1463368 51827042 51845120 51378444 51396525 NC_060935.1 NC_000011.10 98.38 True relocation, inconsistency = 163864 52009108 52020223 51396649 51407769 NC_060935.1 NC_000011.10 98.28 True relocation, inconsistency = 1119668 53139892 53157212 51407770 51425097 NC_060935.1 NC_000011.10 97.95 True relocation, inconsistency = -1041451 52115762 52130724 51425098 51440063 NC_060935.1 NC_000011.10 98.47 True relocation, inconsistency = 1047401 53178126 53187850 51440064 51449790 NC_060935.1 NC_000011.10 98.08 True relocation, inconsistency = -34849 53153005 53187050 51449794 51483835 NC_060935.1 NC_000011.10 97.99 True relocation, inconsistency = -140736 53046315 53052448 51483836 51489970 NC_060935.1 NC_000011.10 97.94 True relocation, inconsistency = 630558 53683007 53703896 51489971 51510866 NC_060935.1 NC_000011.10 97.94 True relocation, inconsistency = -411802 53292095 53301011 51510867 51519795 NC_060935.1 NC_000011.10 98.07 True relocation, inconsistency = 798477 54099662 54113859 51519969 51534169 NC_060935.1 NC_000011.10 97.79 True relocation, inconsistency = -50995 54062871 54084214 51534176 51555526 NC_060935.1 NC_000011.10 97.92 True relocation, inconsistency = -613058 53471157 53497815 51555527 51582199 NC_060935.1 NC_000011.10 97.87 True relocation, inconsistency = -1207820 52289996 52305723 51582200 51597925 NC_060935.1 NC_000011.10 98.16 True relocation, inconsistency = -226936 52078788 52087816 51597926 51606953 NC_060935.1 NC_000011.10 98.28 True relocation, inconsistency = 699279 52787096 52802772 51606954 51622620 NC_060935.1 NC_000011.10 97.72 True relocation, scaffold gap is present, inconsistency = -189034 52614035 52633511 51622917 51642402 NC_060935.1 NC_000011.10 97.97 True relocation, inconsistency = 453847 53087359 53093322 51642403 51648198 NC_060935.1 NC_000011.10 96.98 True relocation, inconsistency = 105221 53198544 53208049 51648199 51657707 NC_060935.1 NC_000011.10 97.99 True relocation, inconsistency = 66802 53274852 53288883 51657708 51671741 NC_060935.1 NC_000011.10 98.15 True relocation, inconsistency = 880057 54169200 54198928 51672001 51701739 NC_060935.1 NC_000011.10 97.74 True relocation, inconsistency = -1048845 53150144 53172086 51701800 51723750 NC_060935.1 NC_000011.10 97.73 True relocation, inconsistency = -14450 53157637 53167519 51723751 51733632 NC_060935.1 NC_000011.10 97.66 True relocation, inconsistency = -1394019 51773501 51787560 51733633 51747691 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = 1910018 53697579 53717395 51747692 51767512 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = -2119951 51597647 51609464 51767715 51779536 NC_060935.1 NC_000011.10 98.28 True relocation, inconsistency = 1424969 53034434 53053520 51779537 51798626 NC_060935.1 NC_000011.10 97.95 True relocation, inconsistency = 90589 53144110 53150513 51798627 51805033 NC_060935.1 NC_000011.10 97.75 True relocation, inconsistency = -544609 52605905 52632982 51805034 51832118 NC_060935.1 NC_000011.10 97.85 True relocation, inconsistency = 728004 53360987 53365015 51832119 51836149 NC_060935.1 NC_000011.10 97.96 True relocation, inconsistency = -1938628 51426388 51445322 51836150 51855091 NC_060935.1 NC_000011.10 97.9 True relocation, inconsistency = 1756091 53201414 53218138 51855092 51871817 NC_060935.1 NC_000011.10 97.93 True relocation, inconsistency = -429722 52788417 52820141 51871818 51903525 NC_060935.1 NC_000011.10 97.84 True relocation, inconsistency = -271300 52548842 52562211 51903526 51916895 NC_060935.1 NC_000011.10 98.03 True relocation, inconsistency = -280964 52281248 52303212 51916896 51938859 NC_060935.1 NC_000011.10 98.12 True relocation, inconsistency = 153479 52456692 52463330 51938860 51945500 NC_060935.1 NC_000011.10 98.02 True relocation, scaffold gap is present, inconsistency = 345944 52809575 52820125 51945801 51956340 NC_060935.1 NC_000011.10 97.82 True relocation, inconsistency = 502444 53322570 53350040 51956341 51983659 NC_060935.1 NC_000011.10 97.38 True relocation, inconsistency = 1045960 54396001 54408326 51983660 51995987 NC_060935.1 NC_000011.10 98.04 True relocation, inconsistency = -307982 54100416 54113437 51996059 52009089 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = -940068 53173451 53181119 52009171 52016839 NC_060935.1 NC_000011.10 98.15 True relocation, inconsistency = -1718693 51462427 51486465 52016840 52040878 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = 1276222 52762688 52768745 52040879 52046937 NC_060935.1 NC_000011.10 97.96 True relocation, inconsistency = -815729 51953017 51982293 52046938 52076219 NC_060935.1 NC_000011.10 98.19 True relocation, inconsistency = -654254 51328177 51340041 52076357 52088226 NC_060935.1 NC_000011.10 98.14 True relocation, inconsistency = 2291281 53631323 53653846 52088227 52110760 NC_060935.1 NC_000011.10 97.99 True relocation, inconsistency = -1615764 52038083 52055717 52110761 52128401 NC_060935.1 NC_000011.10 98.43 True relocation, scaffold gap is present, inconsistency = 813907 52869938 52874355 52128715 52133136 NC_060935.1 NC_000011.10 97.8 True relocation, inconsistency = -892248 51982108 52004726 52133137 52155759 NC_060935.1 NC_000011.10 98.19 True relocation, inconsistency = 1003569 53008296 53023356 52155760 52170823 NC_060935.1 NC_000011.10 97.98 True relocation, inconsistency = 322428 53345785 53359914 52170824 52184954 NC_060935.1 NC_000011.10 97.97 True relocation, inconsistency = -87686 53272229 53277602 52184955 52190328 NC_060935.1 NC_000011.10 97.74 True relocation, inconsistency = 123378 53400981 53429730 52190329 52219081 NC_060935.1 NC_000011.10 97.82 True relocation, inconsistency = -234377 53195354 53212445 52219082 52236174 NC_060935.1 NC_000011.10 97.88 True relocation, inconsistency = -843423 52369023 52372453 52236175 52239606 NC_060935.1 NC_000011.10 98.29 True local misassembly 52373302 52387120 52239607 52253429 NC_060935.1 NC_000011.10 98.0 True local misassembly 52387804 52390778 52253430 52256409 NC_060935.1 NC_000011.10 97.89 True local misassembly 52391629 52414902 52256410 52279693 NC_060935.1 NC_000011.10 98.07 True relocation, inconsistency = 1366202 53781105 53785071 52279694 52283662 NC_060935.1 NC_000011.10 97.97 True relocation, inconsistency = -1778411 52006676 52022749 52283678 52299739 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = 1967942 53990692 53999145 52299740 52308195 NC_060935.1 NC_000011.10 97.45 True relocation, inconsistency = -2394943 51604413 51619230 52308406 52323225 NC_060935.1 NC_000011.10 98.14 True relocation, inconsistency = 2277990 53897221 53914229 52323226 52340238 NC_060935.1 NC_000011.10 97.71 True relocation, inconsistency = -2425027 51489203 51509628 52340239 52360677 NC_060935.1 NC_000011.10 97.9 True relocation, inconsistency = 1355297 52864926 52873166 52360678 52368918 NC_060935.1 NC_000011.10 98.16 True relocation, scaffold gap is present, inconsistency = -550767 52322771 52332310 52369290 52378829 NC_060935.1 NC_000011.10 98.27 True relocation, inconsistency = 1592253 53924564 53942787 52378830 52397058 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = -1422630 52520158 52544608 52397059 52421518 NC_060935.1 NC_000011.10 97.92 True relocation, inconsistency = 792599 53337208 53346589 52421519 52430903 NC_060935.1 NC_000011.10 98.03 True relocation, inconsistency = -427807 52918783 52922731 52430904 52434853 NC_060935.1 NC_000011.10 97.61 True relocation, inconsistency = -1591540 51331192 51357267 52434854 52460936 NC_060935.1 NC_000011.10 97.87 True relocation, inconsistency = 1040130 52397398 52401466 52460937 52465008 NC_060935.1 NC_000011.10 97.79 True relocation, inconsistency = 508925 52910392 52933184 52465009 52487808 NC_060935.1 NC_000011.10 97.75 True relocation, inconsistency = 601168 53534353 53548488 52487809 52501944 NC_060935.1 NC_000011.10 97.83 True relocation, inconsistency = -1919057 51629432 51648976 52501945 52521330 NC_060935.1 NC_000011.10 96.88 True relocation, inconsistency = 64590 51713567 51730201 52521331 52537969 NC_060935.1 NC_000011.10 98.01 True relocation, inconsistency = 250400 51980718 52008126 52538086 52565508 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = 612450 52620577 52633519 52565509 52578457 NC_060935.1 NC_000011.10 97.86 True relocation, inconsistency = -133430 52500128 52516650 52578496 52595018 NC_060935.1 NC_000011.10 97.94 True relocation, inconsistency = -1134977 51381674 51390510 52595019 52603858 NC_060935.1 NC_000011.10 97.79 True relocation, inconsistency = 735027 52125538 52141874 52603859 52620201 NC_060935.1 NC_000011.10 97.98 True relocation, inconsistency = 734147 52876022 52896257 52620202 52640437 NC_060935.1 NC_000011.10 97.8 True relocation, inconsistency = -1056966 51839292 51852692 52640438 52653816 NC_060935.1 NC_000011.10 97.93 True relocation, inconsistency = -532881 51319812 51341313 52653817 52675328 NC_060935.1 NC_000011.10 97.81 True relocation, inconsistency = 137668 51479427 51499345 52675774 52695696 NC_060935.1 NC_000011.10 97.83 True relocation, inconsistency = 1851936 53351282 53361935 52695697 52706353 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = 732030 54093966 54104164 52706354 52716553 NC_060935.1 NC_000011.10 97.56 True relocation, inconsistency = -10199 54093966 54109188 52716554 52731778 NC_060935.1 NC_000011.10 97.44 True relocation, inconsistency = -829067 53280122 53292060 52731779 52743722 NC_060935.1 NC_000011.10 97.61 True relocation, inconsistency = -2190175 51101886 51110519 52743723 52752354 NC_060935.1 NC_000011.10 97.88 True relocation, inconsistency = 754855 51865375 51891925 52752355 52779078 NC_060935.1 NC_000011.10 97.37 True relocation, inconsistency = 1315991 53207917 53210100 52779079 52781263 NC_060935.1 NC_000011.10 97.92 True relocation, inconsistency = -1612455 51597646 51609502 52781264 52793121 NC_060935.1 NC_000011.10 98.05 True relocation, inconsistency = 1007497 52617000 52636388 52793122 52812502 NC_060935.1 NC_000011.10 97.85 True relocation, inconsistency = 153141 52789530 52798535 52812503 52821502 NC_060935.1 NC_000011.10 97.65 True relocation, inconsistency = -917721 51881054 51890606 52821742 52831278 NC_060935.1 NC_000011.10 97.95 True relocation, inconsistency = 2244156 54134763 54153460 52831279 52849983 NC_060935.1 NC_000011.10 97.93 True relocation, inconsistency = -1200628 52952833 52966922 52849984 52864077 NC_060935.1 NC_000011.10 97.8 True relocation, inconsistency = 362207 53329130 53350903 52864078 52885703 NC_060935.1 NC_000011.10 97.1 True relocation, inconsistency = -1949674 51401230 51426693 52885704 52911174 NC_060935.1 NC_000011.10 97.86 True relocation, inconsistency = 1716990 53143684 53154777 52911175 52922273 NC_060935.1 NC_000011.10 97.68 True relocation, inconsistency = 667245 53822023 53832158 52922274 52932415 NC_060935.1 NC_000011.10 97.72 True relocation, inconsistency = -1532763 52299396 52312279 52932416 52945303 NC_060935.1 NC_000011.10 98.21 True relocation, inconsistency = 751129 53063409 53088545 52945304 52970621 NC_060935.1 NC_000011.10 97.36 True relocation, inconsistency = -689766 52398780 52412902 52970622 52984749 NC_060935.1 NC_000011.10 97.91 True relocation, inconsistency = 793291 53206194 53226391 52984750 53004952 NC_060935.1 NC_000011.10 97.89 True relocation, inconsistency = -604106 52622904 52641689 53005571 53024362 NC_060935.1 NC_000011.10 98.01 True relocation, inconsistency = 1494030 54135720 54158838 53024363 53047492 NC_060935.1 NC_000011.10 97.71 True relocation, inconsistency = -2836363 51322476 51336283 53047493 53061306 NC_060935.1 NC_000011.10 97.85 True relocation, inconsistency = 2640885 53977169 53994869 53061307 53079007 NC_060935.1 NC_000011.10 97.42 True relocation, inconsistency = -647034 53347836 53359634 53079008 53090810 NC_060935.1 NC_000011.10 97.67 True relocation, inconsistency = -10199 53349682 53376724 53091057 53118099 NC_060935.1 NC_000011.10 97.52 True relocation, inconsistency = -1062508 52314217 52322023 53118100 53125904 NC_060935.1 NC_000011.10 98.26 True relocation, inconsistency = 67139 52389163 52402597 53125905 53139349 NC_060935.1 NC_000011.10 97.9 True relocation, inconsistency = 144133 52546731 52569631 53139350 53162256 NC_060935.1 NC_000011.10 97.7 True relocation, inconsistency = 1494876 54064508 54076983 53162257 53174735 NC_060935.1 NC_000011.10 97.79 True relocation, inconsistency = -1346834 52730150 52750528 53174736 53195129 NC_060935.1 NC_000011.10 97.82 True relocation, inconsistency = -310365 52440503 52460950 53195469 53215922 NC_060935.1 NC_000011.10 97.91 True relocation, inconsistency = -606335 51854616 51859398 53215923 53220911 NC_060935.1 NC_000011.10 97.05 True relocation, inconsistency = 2232095 54091494 54110609 53220912 53240039 NC_060935.1 NC_000011.10 97.54 True relocation, inconsistency = -1082505 53028105 53050459 53240040 53262395 NC_060935.1 NC_000011.10 97.65 True relocation, inconsistency = 139036 53189496 53205049 53262396 53277949 NC_060935.1 NC_000011.10 97.85 True relocation, inconsistency = -55249 53149801 53167722 53277950 53295875 NC_060935.1 NC_000011.10 97.79 True relocation, inconsistency = -1703393 51464445 51486451 53295991 53318001 NC_060935.1 NC_000011.10 97.99 True relocation, inconsistency = -148716 51337736 51353215 53318002 53333485 NC_060935.1 NC_000011.10 97.84 True relocation, inconsistency = 747761 52100977 52106530 53333486 53339040 NC_060935.1 NC_000011.10 98.07 True relocation, inconsistency = 1171153 53277684 53297425 53339041 53358794 NC_060935.1 NC_000011.10 97.65 True relocation, inconsistency = 354521 53651947 53661454 53358795 53368305 NC_060935.1 NC_000011.10 97.84 True relocation, inconsistency = -686135 52975756 52997870 53368742 53390882 NC_060935.1 NC_000011.10 97.6 True relocation, inconsistency = -1013773 51984098 52001150 53390883 53407942 NC_060935.1 NC_000011.10 98.11 True relocation, inconsistency = 2300223 54301374 54342875 53407943 53449445 NC_060935.1 NC_000011.10 97.7 True relocation, inconsistency = -2560133 51783175 51796989 53449878 53463688 NC_060935.1 NC_000011.10 98.06 True relocation, inconsistency = 1885370 53682360 53691148 53463689 53472479 NC_060935.1 NC_000011.10 97.88 True relocation, inconsistency = -364208 53326941 53350374 53472480 53495763 NC_060935.1 NC_000011.10 97.23 True relocation, inconsistency = 627487 53977862 53988472 53495764 53506381 NC_060935.1 NC_000011.10 97.3 True relocation, inconsistency = -19548 53968957 53980900 53506414 53518362 NC_060935.1 NC_000011.10 97.51 True relocation, inconsistency = -1864058 52117069 52130181 53518589 53531706 NC_060935.1 NC_000011.10 98.13 True relocation, scaffold gap is present, inconsistency = 958572 53089449 53103846 53532402 53546975 NC_060935.1 NC_000011.10 96.78 True relocation, inconsistency = -2007787 51096060 51103145 53546976 53554059 NC_060935.1 NC_000011.10 97.84 True relocation, inconsistency = 2416379 53519525 53534688 53554060 53569225 NC_060935.1 NC_000011.10 97.68 True relocation, inconsistency = 358934 53894305 53908655 53569908 53584261 NC_060935.1 NC_000011.10 97.5 True relocation, inconsistency = 8499 53917258 53928233 53584365 53595346 NC_060935.1 NC_000011.10 97.44 True relocation, inconsistency = -2203034 51725200 51734912 53595347 53605065 NC_060935.1 NC_000011.10 97.82 True relocation, inconsistency = -518407 51216506 51239775 53605066 53628330 NC_060935.1 NC_000011.10 97.89 True relocation, inconsistency = 1388052 52627828 52640364 53628331 53640874 NC_060935.1 NC_000011.10 97.57 True relocation, inconsistency = -1346580 51293785 51310707 53640875 53657802 NC_060935.1 NC_000011.10 97.69 True relocation, inconsistency = 1590177 52901048 52919634 53657966 53676564 NC_060935.1 NC_000011.10 97.58 True relocation, inconsistency = 340121 53259756 53270901 53676565 53687716 NC_060935.1 NC_000011.10 97.81 True local misassembly 53271752 53281852 53687717 53697824 NC_060935.1 NC_000011.10 97.82 True relocation, inconsistency = -1427676 51854177 51872075 53697825 53715723 NC_060935.1 NC_000011.10 97.88 True relocation, inconsistency = 693870 52566121 52578335 53715899 53728113 NC_060935.1 NC_000011.10 97.8 True relocation, inconsistency = 114895 52693231 52715642 53728114 53750537 NC_060935.1 NC_000011.10 97.62 True relocation, inconsistency = 249042 52964685 52972476 53750538 53758328 NC_060935.1 NC_000011.10 97.83 True relocation, inconsistency = 169623 53142100 53159905 53758329 53776137 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = 837223 53997430 54003903 53776439 53782914 NC_060935.1 NC_000011.10 97.69 True relocation, inconsistency = -1897377 52106527 52120525 53782915 53796917 NC_060935.1 NC_000011.10 98.24 True relocation, inconsistency = 1024453 53144979 53164018 53796918 53815965 NC_060935.1 NC_000011.10 97.65 True local misassembly 53170819 53175640 53815966 53820789 NC_060935.1 NC_000011.10 97.84 True relocation, inconsistency = -1450801 51724840 51745825 53820790 53841789 NC_060935.1 NC_000011.10 97.76 True relocation, inconsistency = -140401 51605587 51612329 53841952 53848699 NC_060935.1 NC_000011.10 98.06 True relocation, inconsistency = 2423327 54036703 54058511 53849746 53871560 NC_060935.1 NC_000011.10 97.63 True relocation, inconsistency = -1547572 52510940 52513741 53871561 53874365 NC_060935.1 NC_000011.10 98.07 True relocation, inconsistency = -833098 51680644 51700731 53874366 53894459 NC_060935.1 NC_000011.10 97.86 True relocation, inconsistency = 745561 52446293 52460782 53894460 53908950 NC_060935.1 NC_000011.10 97.61 True relocation, inconsistency = 258528 52719311 52732682 53908951 53922332 NC_060935.1 NC_000011.10 97.72 True relocation, inconsistency = 886735 53619456 53641939 53922371 53944866 NC_060935.1 NC_000011.10 97.57 True relocation, inconsistency = 395507 54037447 54049354 53944867 53956785 NC_060935.1 NC_000011.10 97.35 True relocation, inconsistency = 41646 54091001 54109928 53956786 53975725 NC_060935.1 NC_000011.10 97.47 True relocation, inconsistency = -1567973 52541956 52553078 53975726 53986855 NC_060935.1 NC_000011.10 97.84 True relocation, scaffold gap is present, inconsistency = -1398897 51154965 51162372 53987639 53995050 NC_060935.1 NC_000011.10 97.63 True relocation, inconsistency = 2964849 54127222 54163515 53995051 54030516 NC_060935.1 NC_000011.10 95.47 True relocation, inconsistency = -1615562 52547954 52552531 54030517 54035095 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = 594927 53147459 53162289 54035096 54049913 NC_060935.1 NC_000011.10 97.72 True relocation, inconsistency = -1234402 51928058 51929754 54050084 54051780 NC_060935.1 NC_000011.10 97.57 True relocation, inconsistency = 1714367 53644122 53658087 54051781 54065755 NC_060935.1 NC_000011.10 97.69 True relocation, inconsistency = -830618 52827470 52832635 54065756 54070922 NC_060935.1 NC_000011.10 97.77 True relocation, inconsistency = 829769 53662405 53673860 54070923 54082382 NC_060935.1 NC_000011.10 97.7 True relocation, inconsistency = -105359 53568502 53590894 54082383 54104789 NC_060935.1 NC_000011.10 97.26 True relocation, inconsistency = -571440 53019455 53031008 54104790 54116354 NC_060935.1 NC_000011.10 97.48 True relocation, inconsistency = -1193788 51837221 51850466 54116355 54129601 NC_060935.1 NC_000011.10 97.81 True relocation, inconsistency = 746566 52597033 52616476 54129602 54149049 NC_060935.1 NC_000011.10 97.62 True relocation, inconsistency = 744998 53361475 53372502 54149050 54160079 NC_060935.1 NC_000011.10 97.69 True relocation, inconsistency = 578192 53951176 53967717 54160561 54177107 NC_060935.1 NC_000011.10 97.56 True relocation, inconsistency = -634278 53333542 53349208 54177210 54192891 NC_060935.1 NC_000011.10 97.62 True relocation, inconsistency = -11896 53337313 53352297 54192892 54207885 NC_060935.1 NC_000011.10 97.68 True relocation, inconsistency = -2028696 51323602 51348594 54207886 54232891 NC_060935.1 NC_000011.10 97.78 True relocation, inconsistency = 1681626 53030221 53042553 54232892 54245396 NC_060935.1 NC_000011.10 96.65 True local misassembly 53048504 53062481 54245397 54259381 NC_060935.1 NC_000011.10 97.58 True relocation, inconsistency = -1546506 51515976 51535160 54259382 54278573 NC_060935.1 NC_000011.10 97.67 True relocation, inconsistency = 621311 52156472 52165334 54278574 54287444 NC_060935.1 NC_000011.10 97.68 True relocation, inconsistency = 1127633 53292968 53307915 54287445 54302740 NC_060935.1 NC_000011.10 95.99 True relocation, inconsistency = -705411 52602505 52630431 54302741 54330676 NC_060935.1 NC_000011.10 97.72 True relocation, inconsistency = 78352 52708784 52720500 54330677 54342399 NC_060935.1 NC_000011.10 97.72 True relocation, scaffold gap is present, inconsistency = 1694498 54415100 54426825 54342501 54354218 NC_060935.1 NC_000011.10 96.28 True local misassembly 54427509 54442359 54354219 54369065 NC_060935.1 NC_000011.10 97.14 True local misassembly 54437794 54441851 54369620 54373675 NC_060935.1 NC_000011.10 96.65 True relocation, inconsistency = 9025 54450877 54475700 54373676 54398167 NC_060935.1 NC_000011.10 95.48 True local misassembly 54471613 54475583 54398168 54402146 NC_060935.1 NC_000011.10 96.87 True relocation, inconsistency = -22514 54453070 54475636 54402147 54424720 NC_060935.1 NC_000011.10 97.16 True relocation, scaffold gap is present, inconsistency = -121036 54454958 62085882 54525078 62096264 NC_060935.1 NC_000011.10 98.91 True indel: indel (> 5bp) 62086148 62087612 62096365 62097823 NC_060935.1 NC_000011.10 99.32 True indel: stretch of mismatches 62087839 62089305 62098050 62099512 NC_060935.1 NC_000011.10 99.73 True indel: indel (> 5bp) 62089406 66245314 62099776 66251221 NC_060935.1 NC_000011.10 99.58 True fake: not a misassembly (possible transposable element) 66245315 66246108 66252416 66251623 NC_060935.1 NC_000011.10 99.87 True fake: not a misassembly (possible transposable element) 66246109 70977087 66252433 70955696 NC_060935.1 NC_000011.10 98.89 True relocation, scaffold gap is present, inconsistency = -96356 70980733 87920947 71055698 87978181 NC_060935.1 NC_000011.10 99.69 True relocation, scaffold gap is present, inconsistency = -23620 87922449 89840570 88003303 89920623 NC_060935.1 NC_000011.10 99.75 True relocation, inconsistency = -178481 89840571 89843795 89923848 89920624 NC_060935.1 NC_000011.10 96.43 True inversion 89843796 118891706 89923849 118871517 NC_060935.1 NC_000011.10 99.27 True indel: indel (> 5bp) 118892049 131717467 118871910 131680806 NC_060935.1 NC_000011.10 99.59 True local misassembly 131718623 135124504 131681484 135076382 NC_060935.1 NC_000011.10 99.39 True CONTIG NC_000011.10 135086622 misassembled 3864 7097119 10790 7083650 NC_060936.1 NC_000012.12 99.16 True fake: scaffold gap size wrong estimation (local) 7097351 8421223 7084651 8417001 NC_060936.1 NC_000012.12 98.65 True local misassembly 8422488 9385293 8418015 9402671 NC_060936.1 NC_000012.12 97.4 True local misassembly 9385993 9462666 9403085 9480318 NC_060936.1 NC_000012.12 96.23 True relocation, inconsistency = 21614009 31076676 31077341 9480984 9480319 NC_060936.1 NC_000012.12 97.15 True indel: indel (> 5bp) 31074876 31076675 9482809 9481016 NC_060936.1 NC_000012.12 97.89 True local misassembly 31061642 31074875 9501284 9488053 NC_060936.1 NC_000012.12 98.6 True indel: indel (> 5bp) 31057388 31061618 9505493 9501285 NC_060936.1 NC_000012.12 98.06 True local misassembly 30996835 31056755 9569343 9510412 NC_060936.1 NC_000012.12 96.06 True local misassembly 30983119 30991868 9579296 9570567 NC_060936.1 NC_000012.12 97.11 True relocation, inconsistency = 20030906 9465638 10952061 9579448 11076685 NC_060936.1 NC_000012.12 98.29 True local misassembly 10967428 12261170 11092480 12391999 NC_060936.1 NC_000012.12 99.27 True fake: not a misassembly (possible transposable element) 12261171 12262757 12393583 12392000 NC_060936.1 NC_000012.12 99.75 True fake: not a misassembly (possible transposable element) 12262862 13267026 12393688 13392624 NC_060936.1 NC_000012.12 99.25 True local misassembly 13272036 14463723 13397635 14586197 NC_060936.1 NC_000012.12 99.44 True indel: indel (> 5bp) 14463877 17650212 14586425 17774016 NC_060936.1 NC_000012.12 99.81 True inversion 17650214 17732147 17855919 17774017 NC_060936.1 NC_000012.12 99.62 True inversion 17732147 30029843 17855920 30157787 NC_060936.1 NC_000012.12 99.61 True local misassembly 30029835 34593291 30158108 34719407 NC_060936.1 NC_000012.12 98.91 True relocation, scaffold gap is present, inconsistency = -28582 34615026 34616198 34770896 34769724 NC_060936.1 NC_000012.12 98.47 True local misassembly 34612742 34615025 34773858 34771576 NC_060936.1 NC_000012.12 97.55 True local misassembly 34610628 34612401 34775634 34773859 NC_060936.1 NC_000012.12 95.1 True relocation, inconsistency = -8487 34610563 34614445 34784187 34780304 NC_060936.1 NC_000012.12 97.17 True local misassembly 34615026 34615996 34785158 34784188 NC_060936.1 NC_000012.12 98.86 True local misassembly 34608949 34610562 34787499 34785886 NC_060936.1 NC_000012.12 95.74 True local misassembly 34611960 34613703 34789243 34787500 NC_060936.1 NC_000012.12 98.63 True local misassembly 34600392 34607883 34796735 34789244 NC_060936.1 NC_000012.12 98.02 True local misassembly 34603007 34604273 34798195 34796929 NC_060936.1 NC_000012.12 97.4 True fake: scaffold gap size wrong estimation (local) 34600458 34602928 34800910 34798438 NC_060936.1 NC_000012.12 98.58 True local misassembly 34598168 34599778 34802522 34800911 NC_060936.1 NC_000012.12 99.19 True relocation, inconsistency = -10188 34606580 34608223 34804298 34802655 NC_060936.1 NC_000012.12 97.45 True local misassembly 34602559 34606579 34808663 34804639 NC_060936.1 NC_000012.12 97.52 True local misassembly 34601038 34602558 34811543 34810024 NC_060936.1 NC_000012.12 98.75 True local misassembly 34602083 34606703 34816611 34811992 NC_060936.1 NC_000012.12 98.51 True relocation, scaffold gap is present, inconsistency = -19750 34618258 34621732 34820185 34816712 NC_060936.1 NC_000012.12 99.57 True inversion, scaffold gap is present 34615924 34617928 34820286 34822289 NC_060936.1 NC_000012.12 99.8 True fake: scaffold gap size wrong estimation (local) 34624558 34627408 34829238 34832088 NC_060936.1 NC_000012.12 99.93 True relocation, scaffold gap is present, inconsistency = 2574977 37202486 37205491 34832189 34835195 NC_060936.1 NC_000012.12 99.57 True relocation, scaffold gap is present, inconsistency = 1268146 35927444 35933936 34842091 34835599 NC_060936.1 NC_000012.12 97.43 True relocation, inconsistency = 168423 35757155 35759020 34843958 34842092 NC_060936.1 NC_000012.12 97.0 True local misassembly 35751896 35757154 34849897 34844640 NC_060936.1 NC_000012.12 96.46 True relocation, scaffold gap is present, inconsistency = -1154171 36904421 36905522 34851543 34850442 NC_060936.1 NC_000012.12 96.44 True relocation, inconsistency = 2039176 34858278 34865244 34858502 34851544 NC_060936.1 NC_000012.12 97.3 True relocation, inconsistency = -1984910 36836120 36841453 34865579 34860237 NC_060936.1 NC_000012.12 96.71 True relocation, inconsistency = 583712 36238669 36252407 34879321 34865580 NC_060936.1 NC_000012.12 96.23 True relocation, inconsistency = 1565967 34670699 34672701 34881324 34879322 NC_060936.1 NC_000012.12 97.88 True relocation, inconsistency = -1222289 35892085 35892987 34882227 34881325 NC_060936.1 NC_000012.12 97.45 True relocation, inconsistency = -581384 36464716 36468911 34890980 34886785 NC_060936.1 NC_000012.12 97.92 True relocation, inconsistency = -429502 36888471 36894217 34896736 34890981 NC_060936.1 NC_000012.12 97.95 True relocation, inconsistency = 1606537 35271536 35281933 34907135 34896737 NC_060936.1 NC_000012.12 98.1 True relocation, inconsistency = 27847 35241012 35243455 34909813 34907369 NC_060936.1 NC_000012.12 98.69 True local misassembly 35239605 35240671 34910881 34909814 NC_060936.1 NC_000012.12 97.19 True local misassembly 35234866 35239604 34915957 34911221 NC_060936.1 NC_000012.12 98.8 True local misassembly 35226442 35234514 34925405 34917329 NC_060936.1 NC_000012.12 97.36 True relocation, inconsistency = -1004860 36229586 36231263 34927122 34925444 NC_060936.1 NC_000012.12 98.57 True local misassembly 36228098 36229245 34928270 34927123 NC_060936.1 NC_000012.12 97.56 True local misassembly 36221045 36227757 34934989 34928271 NC_060936.1 NC_000012.12 97.69 True relocation, inconsistency = -961705 37178943 37182749 34938793 34934990 NC_060936.1 NC_000012.12 96.66 True local misassembly 37175945 37178262 34941118 34938794 NC_060936.1 NC_000012.12 95.94 True relocation, inconsistency = 1210292 35957711 35965652 34949060 34941119 NC_060936.1 NC_000012.12 98.39 True relocation, inconsistency = -703615 36641860 36661325 34968194 34949061 NC_060936.1 NC_000012.12 96.34 True relocation, inconsistency = 1496230 35143205 35145265 34970619 34968559 NC_060936.1 NC_000012.12 98.35 True local misassembly 35138880 35142864 34974607 34970620 NC_060936.1 NC_000012.12 98.75 True local misassembly 35130386 35138539 34982760 34974608 NC_060936.1 NC_000012.12 98.48 True relocation, inconsistency = 74377 35031354 35055937 35006742 34982832 NC_060936.1 NC_000012.12 95.79 True relocation, inconsistency = -1297610 36322615 36328963 35013091 35006743 NC_060936.1 NC_000012.12 97.01 True local misassembly 36318010 36322614 35018036 35013431 NC_060936.1 NC_000012.12 98.5 True relocation, inconsistency = 453378 35862821 35864631 35019847 35018037 NC_060936.1 NC_000012.12 97.1 True local misassembly 35860436 35862820 35022571 35020188 NC_060936.1 NC_000012.12 98.2 True local misassembly 35852625 35860096 35030047 35022572 NC_060936.1 NC_000012.12 98.19 True relocation, inconsistency = 936960 34909163 34915664 35036556 35030048 NC_060936.1 NC_000012.12 97.84 True relocation, inconsistency = -153175 35030419 35061375 35069166 35037519 NC_060936.1 NC_000012.12 96.27 True relocation, inconsistency = -966464 35996238 35996882 35069815 35069167 NC_060936.1 NC_000012.12 95.43 True local misassembly 35989466 35995897 35076254 35069816 NC_060936.1 NC_000012.12 98.15 True local misassembly 35988596 35989465 35077461 35076595 NC_060936.1 NC_000012.12 96.27 True relocation, inconsistency = 822804 35154591 35165791 35088667 35077462 NC_060936.1 NC_000012.12 97.51 True relocation, inconsistency = -296449 35448987 35451039 35090719 35088668 NC_060936.1 NC_000012.12 98.05 True relocation, inconsistency = 140588 35286226 35308398 35112903 35090720 NC_060936.1 NC_000012.12 98.17 True relocation, inconsistency = -1370925 36650398 36657150 35119656 35112904 NC_060936.1 NC_000012.12 96.21 True relocation, inconsistency = 1619175 35002383 35031222 35148494 35119657 NC_060936.1 NC_000012.12 98.75 True relocation, inconsistency = -165738 35152907 35168120 35164047 35148495 NC_060936.1 NC_000012.12 96.79 True relocation, inconsistency = -410216 35561298 35562948 35165873 35164222 NC_060936.1 NC_000012.12 99.03 True local misassembly 35552811 35560617 35173685 35165874 NC_060936.1 NC_000012.12 96.01 True local misassembly 35550324 35552130 35175493 35173686 NC_060936.1 NC_000012.12 98.89 True relocation, inconsistency = -169474 35715742 35719644 35179551 35175647 NC_060936.1 NC_000012.12 98.34 True local misassembly 35713700 35715741 35181935 35179893 NC_060936.1 NC_000012.12 98.29 True local misassembly 35708670 35713360 35186624 35181936 NC_060936.1 NC_000012.12 98.28 True relocation, inconsistency = -1044893 36740709 36753562 35199476 35186625 NC_060936.1 NC_000012.12 97.86 True relocation, inconsistency = 1129466 35604000 35611242 35206724 35199477 NC_060936.1 NC_000012.12 97.47 True relocation, inconsistency = 860947 34741077 34742863 35208701 35206914 NC_060936.1 NC_000012.12 96.79 True relocation, inconsistency = -71344 34795027 34812420 35226089 35208702 NC_060936.1 NC_000012.12 98.14 True local misassembly 34788885 34795026 35232569 35226429 NC_060936.1 NC_000012.12 98.21 True local misassembly 34784564 34788205 35236212 35232570 NC_060936.1 NC_000012.12 97.61 True relocation, inconsistency = -339654 35116746 35123869 35243684 35236561 NC_060936.1 NC_000012.12 98.34 True relocation, inconsistency = -501577 35613698 35617982 35248311 35244025 NC_060936.1 NC_000012.12 96.4 True relocation, inconsistency = -1124710 36726678 36738407 35260056 35248312 NC_060936.1 NC_000012.12 97.92 True relocation, inconsistency = 310042 36415709 36416635 35260983 35260057 NC_060936.1 NC_000012.12 98.35 True local misassembly 36414311 36415368 35262041 35260984 NC_060936.1 NC_000012.12 98.11 True relocation, inconsistency = -78785 36490182 36492752 35264956 35262385 NC_060936.1 NC_000012.12 97.71 True local misassembly 36485573 36489841 35269228 35264957 NC_060936.1 NC_000012.12 98.01 True relocation, inconsistency = 1666425 34817935 34819147 35270441 35269229 NC_060936.1 NC_000012.12 95.12 True local misassembly 34815866 34817934 35272851 35270783 NC_060936.1 NC_000012.12 99.18 True relocation, inconsistency = -193275 35005002 35008749 35276995 35273243 NC_060936.1 NC_000012.12 98.11 True local misassembly 35002092 35004661 35279565 35276996 NC_060936.1 NC_000012.12 98.29 True relocation, inconsistency = -1925356 36910063 36927447 35296627 35279566 NC_060936.1 NC_000012.12 95.3 True relocation, inconsistency = 360181 36543791 36549881 35302717 35296628 NC_060936.1 NC_000012.12 98.27 True relocation, inconsistency = 297139 36232758 36246572 35316619 35302797 NC_060936.1 NC_000012.12 97.02 True relocation, inconsistency = 618748 35610300 35614009 35320329 35316620 NC_060936.1 NC_000012.12 98.51 True relocation, inconsistency = 276769 35329722 35333530 35324141 35320330 NC_060936.1 NC_000012.12 97.9 True local misassembly 35325103 35329381 35328422 35324142 NC_060936.1 NC_000012.12 98.55 True local misassembly 35322962 35324423 35329884 35328423 NC_060936.1 NC_000012.12 99.73 True relocation, inconsistency = -1054431 36373559 36376968 35333719 35330309 NC_060936.1 NC_000012.12 98.01 True relocation, inconsistency = 130392 36231410 36243166 35345480 35333720 NC_060936.1 NC_000012.12 98.33 True relocation, inconsistency = -689234 36919943 36920643 35346182 35345481 NC_060936.1 NC_000012.12 96.52 True relocation, inconsistency = 2259612 34658669 34660330 35347844 35346183 NC_060936.1 NC_000012.12 96.01 True relocation, inconsistency = -1150652 35801029 35809320 35356131 35347845 NC_060936.1 NC_000012.12 97.88 True relocation, inconsistency = 498886 35278329 35302142 35379285 35356132 NC_060936.1 NC_000012.12 95.64 True relocation, inconsistency = -888364 36165734 36166692 35380242 35379286 NC_060936.1 NC_000012.12 98.53 True relocation, inconsistency = 127699 36027498 36038034 35390781 35380243 NC_060936.1 NC_000012.12 97.4 True local misassembly 36026081 36027157 35391858 35390782 NC_060936.1 NC_000012.12 98.79 True relocation, inconsistency = 168760 35852046 35854669 35397139 35394510 NC_060936.1 NC_000012.12 97.57 True local misassembly 35850208 35851365 35398300 35397140 NC_060936.1 NC_000012.12 98.36 True local misassembly 35848024 35850207 35400825 35398640 NC_060936.1 NC_000012.12 96.02 True local misassembly 35845173 35848023 35404018 35401167 NC_060936.1 NC_000012.12 97.3 True local misassembly 35844666 35845172 35404865 35404358 NC_060936.1 NC_000012.12 97.44 True local misassembly 35835993 35844665 35413877 35405205 NC_060936.1 NC_000012.12 98.05 True relocation, inconsistency = -28177 35860436 35864169 35417614 35413878 NC_060936.1 NC_000012.12 97.86 True local misassembly 35856708 35860435 35421683 35417955 NC_060936.1 NC_000012.12 98.7 True local misassembly 35841718 35849922 35429895 35421684 NC_060936.1 NC_000012.12 97.86 True relocation, inconsistency = 770891 35064832 35070680 35435887 35430042 NC_060936.1 NC_000012.12 96.92 True local misassembly 35062005 35064831 35439053 35436228 NC_060936.1 NC_000012.12 98.76 True local misassembly 35060803 35061664 35439916 35439054 NC_060936.1 NC_000012.12 95.66 True relocation, inconsistency = 251347 34795027 34809455 35454350 35439917 NC_060936.1 NC_000012.12 98.5 True relocation, inconsistency = -181058 34969832 34976084 35460602 35454351 NC_060936.1 NC_000012.12 98.67 True local misassembly 34962886 34969831 35468231 35461284 NC_060936.1 NC_000012.12 98.98 True local misassembly 34961675 34962545 35469103 35468232 NC_060936.1 NC_000012.12 97.38 True relocation, inconsistency = 153541 34803171 34808133 35474067 35469104 NC_060936.1 NC_000012.12 98.57 True local misassembly 34785507 34801812 35490372 35474068 NC_060936.1 NC_000012.12 98.05 True relocation, inconsistency = -1546247 36330852 36331753 35491278 35490373 NC_060936.1 NC_000012.12 97.74 True relocation, inconsistency = 1283010 35030419 35047841 35508702 35491279 NC_060936.1 NC_000012.12 98.52 True relocation, inconsistency = -166409 35190040 35196827 35515327 35508703 NC_060936.1 NC_000012.12 96.28 True relocation, inconsistency = 252001 34935996 34938038 35517370 35515328 NC_060936.1 NC_000012.12 97.59 True local misassembly 34934503 34935655 35518523 35517371 NC_060936.1 NC_000012.12 98.01 True local misassembly 34929014 34934502 35524348 35518864 NC_060936.1 NC_000012.12 97.8 True relocation, inconsistency = -1584559 36512306 36513572 35525611 35524349 NC_060936.1 NC_000012.12 97.32 True local misassembly 36511399 36511965 35526178 35525612 NC_060936.1 NC_000012.12 98.08 True relocation, inconsistency = -134132 36638388 36645530 35533318 35526179 NC_060936.1 NC_000012.12 97.31 True local misassembly 36634992 36638047 35536377 35533319 NC_060936.1 NC_000012.12 98.43 True local misassembly 36631258 36634652 35539773 35536378 NC_060936.1 NC_000012.12 98.62 True local misassembly 36625824 36630084 35545207 35540948 NC_060936.1 NC_000012.12 98.31 True relocation, inconsistency = 1120652 35501100 35505171 35549279 35545208 NC_060936.1 NC_000012.12 98.77 True relocation, inconsistency = 495467 34992400 35005632 35562519 35549280 NC_060936.1 NC_000012.12 98.19 True relocation, inconsistency = -77081 35063135 35069141 35568868 35562859 NC_060936.1 NC_000012.12 98.34 True local misassembly 35054228 35062795 35577441 35568869 NC_060936.1 NC_000012.12 98.66 True relocation, inconsistency = -217009 35267859 35270897 35580816 35577781 NC_060936.1 NC_000012.12 97.67 True relocation, inconsistency = 228891 35024566 35038967 35595219 35580817 NC_060936.1 NC_000012.12 98.26 True relocation, inconsistency = -825899 35844912 35849922 35600775 35595762 NC_060936.1 NC_000012.12 97.93 True local misassembly 35840070 35844911 35605959 35601116 NC_060936.1 NC_000012.12 97.98 True local misassembly 35836008 35839729 35609678 35605960 NC_060936.1 NC_000012.12 98.44 True relocation, inconsistency = 937991 34886522 34898016 35621178 35609679 NC_060936.1 NC_000012.12 97.93 True relocation, inconsistency = -428936 35310636 35315457 35626000 35621179 NC_060936.1 NC_000012.12 95.44 True local misassembly 35308249 35310295 35628048 35626001 NC_060936.1 NC_000012.12 99.02 True local misassembly 35294973 35308248 35641661 35628388 NC_060936.1 NC_000012.12 98.16 True local misassembly 35290771 35294293 35645186 35641662 NC_060936.1 NC_000012.12 98.53 True relocation, inconsistency = 396677 34876217 34894093 35662691 35645187 NC_060936.1 NC_000012.12 96.39 True relocation, inconsistency = -1663020 36533525 36539236 35668408 35662692 NC_060936.1 NC_000012.12 97.97 True local misassembly 36532787 36533524 35669486 35668749 NC_060936.1 NC_000012.12 96.21 True relocation, inconsistency = 1370930 35148394 35160695 35683291 35670648 NC_060936.1 NC_000012.12 95.51 True relocation, inconsistency = 76764 35070172 35071251 35684751 35683670 NC_060936.1 NC_000012.12 98.43 True local misassembly 35067091 35069832 35687493 35684752 NC_060936.1 NC_000012.12 98.33 True relocation, inconsistency = 271726 34786923 34795364 35695933 35687494 NC_060936.1 NC_000012.12 97.86 True relocation, inconsistency = -2373799 37146817 37160448 35709846 35696207 NC_060936.1 NC_000012.12 96.31 True relocation, inconsistency = 2109540 35029542 35037276 35717583 35709847 NC_060936.1 NC_000012.12 98.27 True relocation, inconsistency = -1040502 36060919 36069592 35726714 35718035 NC_060936.1 NC_000012.12 98.48 True relocation, inconsistency = -566790 36625535 36627628 35728885 35726795 NC_060936.1 NC_000012.12 97.9 True local misassembly 36618690 36625194 35735386 35728886 NC_060936.1 NC_000012.12 97.06 True relocation, inconsistency = 690379 35927409 35928310 35736289 35735387 NC_060936.1 NC_000012.12 97.55 True relocation, inconsistency = 612290 35299547 35314717 35751865 35736691 NC_060936.1 NC_000012.12 97.77 True relocation, inconsistency = -122933 35412471 35422479 35761869 35751866 NC_060936.1 NC_000012.12 97.21 True relocation, inconsistency = 518928 34889784 34893542 35765633 35761870 NC_060936.1 NC_000012.12 98.2 True local misassembly 34886025 34889104 35768713 35765634 NC_060936.1 NC_000012.12 99.03 True local misassembly 34872347 34886024 35783072 35769394 NC_060936.1 NC_000012.12 98.08 True relocation, inconsistency = -1937381 36807264 36809727 35785538 35783073 NC_060936.1 NC_000012.12 97.47 True relocation, inconsistency = 765774 36031978 36040375 35795057 35786653 NC_060936.1 NC_000012.12 98.05 True relocation, inconsistency = -363380 36394037 36395280 35796379 35795135 NC_060936.1 NC_000012.12 97.19 True relocation, inconsistency = 1127440 35260733 35266279 35802239 35796697 NC_060936.1 NC_000012.12 97.13 True relocation, inconsistency = -1254455 36507702 36515187 35809728 35802240 NC_060936.1 NC_000012.12 98.27 True relocation, inconsistency = 1485042 35004646 35022659 35827420 35809729 NC_060936.1 NC_000012.12 96.36 True relocation, inconsistency = -1623930 36626903 36628575 35829093 35827421 NC_060936.1 NC_000012.12 95.7 True relocation, inconsistency = 1124726 35494170 35502176 35837103 35829094 NC_060936.1 NC_000012.12 98.05 True relocation, inconsistency = 444872 35042644 35049297 35843750 35837104 NC_060936.1 NC_000012.12 96.93 True relocation, inconsistency = -1368896 36397283 36411190 35857669 35844100 NC_060936.1 NC_000012.12 95.82 True relocation, inconsistency = 583059 35813572 35814223 35858324 35857670 NC_060936.1 NC_000012.12 97.61 True relocation, inconsistency = 639800 35158340 35173771 35874100 35858325 NC_060936.1 NC_000012.12 96.34 True relocation, inconsistency = -1397075 36548332 36555414 35881195 35874101 NC_060936.1 NC_000012.12 98.01 True local misassembly 36543024 36548331 35887186 35881876 NC_060936.1 NC_000012.12 97.83 True relocation, inconsistency = 1087045 35443018 35455978 35900150 35887187 NC_060936.1 NC_000012.12 98.49 True relocation, inconsistency = -1636207 37075962 37078745 35903418 35900630 NC_060936.1 NC_000012.12 97.74 True local misassembly 37074251 37075621 35904794 35903419 NC_060936.1 NC_000012.12 97.78 True relocation, inconsistency = 1896665 35166613 35177585 35915774 35904795 NC_060936.1 NC_000012.12 98.36 True local misassembly 35164589 35165933 35917118 35915775 NC_060936.1 NC_000012.12 98.22 True relocation, inconsistency = -121563 35277275 35285995 35925998 35917275 NC_060936.1 NC_000012.12 97.43 True local misassembly 35272894 35277274 35930720 35926339 NC_060936.1 NC_000012.12 96.92 True relocation, inconsistency = -574933 35845143 35847537 35933408 35931010 NC_060936.1 NC_000012.12 98.0 True local misassembly 35834107 35845142 35944781 35933749 NC_060936.1 NC_000012.12 98.11 True relocation, inconsistency = -695822 36525702 36529561 35949008 35945149 NC_060936.1 NC_000012.12 97.9 True local misassembly 36524558 36525701 35950494 35949349 NC_060936.1 NC_000012.12 97.38 True local misassembly 36518570 36524557 35957162 35951174 NC_060936.1 NC_000012.12 98.48 True local misassembly 36516923 36518569 35959149 35957503 NC_060936.1 NC_000012.12 98.92 True relocation, inconsistency = 1849176 34663685 34667746 35963215 35959150 NC_060936.1 NC_000012.12 96.09 True local misassembly 34661288 34663684 35965951 35963555 NC_060936.1 NC_000012.12 95.2 True local misassembly 34657619 34660948 35969283 35965952 NC_060936.1 NC_000012.12 96.11 True relocation, inconsistency = -371943 35005549 35029561 35993641 35969284 NC_060936.1 NC_000012.12 96.89 True relocation, inconsistency = -1016720 36021156 36022268 35994754 35993642 NC_060936.1 NC_000012.12 97.92 True local misassembly 36003679 36018439 36009525 35994755 NC_060936.1 NC_000012.12 97.77 True relocation, inconsistency = 1151919 34849835 34851759 36011450 36009526 NC_060936.1 NC_000012.12 98.28 True local misassembly 34847003 34849496 36013944 36011451 NC_060936.1 NC_000012.12 98.12 True local misassembly 34844288 34847002 36016999 36014284 NC_060936.1 NC_000012.12 96.58 True relocation, inconsistency = -1023228 35866547 35867515 36017968 36017000 NC_060936.1 NC_000012.12 97.88 True local misassembly 35862811 35866546 36022042 36018309 NC_060936.1 NC_000012.12 98.28 True relocation, inconsistency = 410568 35442713 35452242 36031579 36022043 NC_060936.1 NC_000012.12 98.34 True relocation, inconsistency = -366443 35803874 35809069 36036861 36031666 NC_060936.1 NC_000012.12 97.44 True local misassembly 35802540 35803873 36038876 36037542 NC_060936.1 NC_000012.12 97.23 True relocation, inconsistency = -1131013 36926014 36933291 36046433 36039138 NC_060936.1 NC_000012.12 96.64 True relocation, inconsistency = 1709030 35209733 35216981 36053693 36046436 NC_060936.1 NC_000012.12 97.15 True relocation, inconsistency = -1206901 36414815 36416633 36055513 36053694 NC_060936.1 NC_000012.12 98.2 True relocation, inconsistency = 1732008 34671620 34682806 36066695 36055514 NC_060936.1 NC_000012.12 96.13 True relocation, inconsistency = -215707 34879615 34887289 36074413 36066733 NC_060936.1 NC_000012.12 98.36 True relocation, inconsistency = -284279 35157447 35163589 36080860 36074718 NC_060936.1 NC_000012.12 98.37 True relocation, inconsistency = -1389945 36533470 36547244 36094780 36081008 NC_060936.1 NC_000012.12 98.19 True relocation, inconsistency = 1531907 34988802 35001211 36107548 36095132 NC_060936.1 NC_000012.12 97.88 True relocation, inconsistency = -1763827 36744719 36752309 36115459 36107868 NC_060936.1 NC_000012.12 97.88 True local misassembly 36742343 36744718 36118174 36115800 NC_060936.1 NC_000012.12 98.32 True local misassembly 36740593 36742002 36119584 36118175 NC_060936.1 NC_000012.12 97.09 True local misassembly 36738930 36740592 36121589 36119924 NC_060936.1 NC_000012.12 97.54 True local misassembly 36734813 36738589 36125370 36121590 NC_060936.1 NC_000012.12 96.72 True relocation, inconsistency = 1843998 34887795 34890814 36128390 36125371 NC_060936.1 NC_000012.12 98.32 True relocation, inconsistency = 83226 34795356 34804246 36137596 36128713 NC_060936.1 NC_000012.12 98.24 True relocation, inconsistency = -964524 35757963 35759879 36139511 36137597 NC_060936.1 NC_000012.12 95.06 True relocation, inconsistency = 712152 35029227 35045810 36155774 36139512 NC_060936.1 NC_000012.12 96.1 True relocation, inconsistency = 318278 34702627 34710948 36164097 36155775 NC_060936.1 NC_000012.12 96.9 True relocation, inconsistency = -590638 35289584 35293264 36167783 36164098 NC_060936.1 NC_000012.12 97.57 True local misassembly 35288155 35289243 36168872 36167784 NC_060936.1 NC_000012.12 98.53 True local misassembly 35282135 35288154 36175238 36169213 NC_060936.1 NC_000012.12 97.8 True relocation, inconsistency = -175221 35422312 35457355 36209621 36175239 NC_060936.1 NC_000012.12 95.64 True relocation, inconsistency = -1419792 36830102 36842103 36221631 36209622 NC_060936.1 NC_000012.12 97.27 True relocation, inconsistency = 568778 36255173 36261323 36227444 36221632 NC_060936.1 NC_000012.12 95.94 True relocation, inconsistency = 962411 35274933 35292761 36245280 36227445 NC_060936.1 NC_000012.12 97.98 True relocation, inconsistency = -1586180 36857382 36861112 36249016 36245281 NC_060936.1 NC_000012.12 97.01 True local misassembly 36854049 36857381 36252693 36249356 NC_060936.1 NC_000012.12 97.03 True local misassembly 36852991 36853709 36253412 36252694 NC_060936.1 NC_000012.12 98.45 True relocation, inconsistency = 1140971 35696383 35712019 36269059 36253413 NC_060936.1 NC_000012.12 97.97 True relocation, inconsistency = -787159 36480807 36483541 36271798 36269060 NC_060936.1 NC_000012.12 97.53 True relocation, inconsistency = 460849 36004358 36019957 36287412 36271799 NC_060936.1 NC_000012.12 97.41 True relocation, inconsistency = 1320071 34676813 34684286 36294883 36287413 NC_060936.1 NC_000012.12 96.13 True relocation, inconsistency = -425258 35090673 35101933 36305934 36295021 NC_060936.1 NC_000012.12 95.17 True relocation, inconsistency = -1629030 36716693 36719702 36308950 36305935 NC_060936.1 NC_000012.12 98.62 True relocation, inconsistency = 874441 35835932 35842251 36315271 36308951 NC_060936.1 NC_000012.12 96.98 True local misassembly 35832401 35835592 36318467 36315272 NC_060936.1 NC_000012.12 97.26 True relocation, inconsistency = -879195 36694666 36711595 36335390 36318468 NC_060936.1 NC_000012.12 97.92 True relocation, inconsistency = 926380 35766114 35768285 36337562 36335391 NC_060936.1 NC_000012.12 97.5 True local misassembly 35763087 35765774 36340251 36337563 NC_060936.1 NC_000012.12 98.1 True local misassembly 35761308 35763086 36342372 36340592 NC_060936.1 NC_000012.12 98.58 True relocation, inconsistency = -1147341 36902210 36908648 36348816 36342373 NC_060936.1 NC_000012.12 97.95 True local misassembly 36901196 36902209 36350176 36349159 NC_060936.1 NC_000012.12 97.74 True relocation, inconsistency = 1994351 34894266 34906844 36363096 36350177 NC_060936.1 NC_000012.12 95.5 True relocation, inconsistency = -1544837 36430564 36439102 36371643 36363097 NC_060936.1 NC_000012.12 97.34 True relocation, inconsistency = 1318976 35100113 35111370 36383123 36371861 NC_060936.1 NC_000012.12 98.22 True relocation, inconsistency = -1824843 36912200 36924836 36395891 36383243 NC_060936.1 NC_000012.12 97.2 True relocation, inconsistency = 209069 36699450 36703130 36399572 36395892 NC_060936.1 NC_000012.12 98.34 True local misassembly 36689479 36698320 36409549 36400702 NC_060936.1 NC_000012.12 98.1 True relocation, inconsistency = 1633442 35029542 35055568 36435719 36410018 NC_060936.1 NC_000012.12 96.87 True relocation, inconsistency = -1505423 36530798 36534964 36439887 36435720 NC_060936.1 NC_000012.12 97.47 True relocation, inconsistency = 652365 35872339 35878097 36445983 36440223 NC_060936.1 NC_000012.12 97.97 True relocation, inconsistency = 997749 34855766 34874589 36464551 36445984 NC_060936.1 NC_000012.12 96.78 True relocation, inconsistency = -162282 34991153 35018047 36491468 36464552 NC_060936.1 NC_000012.12 97.87 True relocation, inconsistency = 112094 34872632 34879058 36497895 36491469 NC_060936.1 NC_000012.12 97.27 True relocation, inconsistency = -470705 35329265 35343242 36511977 36497990 NC_060936.1 NC_000012.12 97.56 True relocation, inconsistency = -1857558 37185581 37186822 36513218 36511978 NC_060936.1 NC_000012.12 95.6 True local misassembly 37178616 37185580 36520530 36513559 NC_060936.1 NC_000012.12 95.74 True relocation, inconsistency = 2429856 34742567 34748759 36526730 36520531 NC_060936.1 NC_000012.12 96.52 True local misassembly 34741172 34742566 36528461 36527070 NC_060936.1 NC_000012.12 96.53 True relocation, inconsistency = -54017 34784011 34795188 36539640 36528462 NC_060936.1 NC_000012.12 97.4 True local misassembly 34782580 34784010 36541410 36539980 NC_060936.1 NC_000012.12 97.2 True relocation, inconsistency = -30576 34806227 34813136 36548345 36541430 NC_060936.1 NC_000012.12 96.73 True relocation, inconsistency = -897614 35695019 35703569 36557170 36548617 NC_060936.1 NC_000012.12 97.28 True relocation, inconsistency = -1419800 37113657 37114818 36558331 36557171 NC_060936.1 NC_000012.12 95.59 True relocation, inconsistency = 2137719 34972811 34975937 36561454 36558332 NC_060936.1 NC_000012.12 98.37 True relocation, inconsistency = -28531 34984652 35001341 36578146 36561455 NC_060936.1 NC_000012.12 98.24 True relocation, inconsistency = 261226 34719336 34723202 36582237 36578370 NC_060936.1 NC_000012.12 97.34 True relocation, inconsistency = -1321080 36037838 36040211 36584810 36582442 NC_060936.1 NC_000012.12 97.97 True relocation, inconsistency = 1345875 34686880 34691962 36589892 36584811 NC_060936.1 NC_000012.12 95.54 True relocation, inconsistency = -366504 35038891 35053383 36604049 36589893 NC_060936.1 NC_000012.12 95.35 True relocation, inconsistency = -314468 35352408 35353358 36604998 36604050 NC_060936.1 NC_000012.12 95.98 True relocation, inconsistency = 327373 34995520 35025034 36634529 36604999 NC_060936.1 NC_000012.12 97.92 True relocation, inconsistency = -1818489 36809186 36814008 36639359 36634530 NC_060936.1 NC_000012.12 97.21 True relocation, inconsistency = 1837177 34966224 34971988 36645149 36639380 NC_060936.1 NC_000012.12 97.38 True relocation, inconsistency = -1737359 36699394 36703582 36649336 36645150 NC_060936.1 NC_000012.12 97.97 True relocation, inconsistency = 1651101 35030292 35048292 36667353 36649337 NC_060936.1 NC_000012.12 98.41 True relocation, inconsistency = 46184 34978108 34984107 36673355 36667354 NC_060936.1 NC_000012.12 97.98 True fake: scaffold gap size wrong estimation (local) 34977555 34978059 36674096 36673590 NC_060936.1 NC_000012.12 98.22 True local misassembly 34970761 34977215 36680549 36674097 NC_060936.1 NC_000012.12 97.49 True local misassembly 34961646 34970421 36689319 36680550 NC_060936.1 NC_000012.12 97.72 True relocation, inconsistency = -89317 35032244 35050624 36708013 36689658 NC_060936.1 NC_000012.12 98.09 True relocation, inconsistency = -905026 35928342 35933963 36716945 36711320 NC_060936.1 NC_000012.12 97.44 True relocation, inconsistency = 924379 34991486 35003962 36729439 36716946 NC_060936.1 NC_000012.12 98.16 True relocation, inconsistency = -1523753 36512399 36515238 36732274 36729440 NC_060936.1 NC_000012.12 97.79 True local misassembly 36506374 36512058 36737951 36732275 NC_060936.1 NC_000012.12 97.08 True relocation, inconsistency = 1744557 34760241 34761816 36739527 36737952 NC_060936.1 NC_000012.12 98.19 True relocation, inconsistency = -2111948 36868499 36872178 36743220 36739538 NC_060936.1 NC_000012.12 96.28 True local misassembly 36864371 36868158 36747010 36743221 NC_060936.1 NC_000012.12 97.36 True local misassembly 36855537 36864026 36755511 36747011 NC_060936.1 NC_000012.12 96.57 True local misassembly 36851348 36855196 36759361 36755512 NC_060936.1 NC_000012.12 97.56 True relocation, inconsistency = 124934 36711396 36725979 36774395 36759796 NC_060936.1 NC_000012.12 98.21 True relocation, inconsistency = 1581140 35124815 35130255 36779839 36774396 NC_060936.1 NC_000012.12 97.97 True relocation, scaffold gap is present, inconsistency = -724838 35848544 35849337 36780948 36780155 NC_060936.1 NC_000012.12 97.46 True relocation, inconsistency = 890426 34941590 34958117 36797477 36780949 NC_060936.1 NC_000012.12 98.04 True relocation, scaffold gap is present, inconsistency = -1768030 36687153 36709351 36820623 36797746 NC_060936.1 NC_000012.12 95.2 True relocation, inconsistency = 41773 36641893 36645379 36824112 36820624 NC_060936.1 NC_000012.12 97.96 True relocation, inconsistency = 1838264 34795026 34803628 36832715 36824113 NC_060936.1 NC_000012.12 98.01 True local misassembly 34788333 34795025 36839749 36833055 NC_060936.1 NC_000012.12 97.73 True local misassembly 34784566 34787653 36842838 36839750 NC_060936.1 NC_000012.12 96.83 True relocation, inconsistency = -310445 35070659 35094969 36867859 36842880 NC_060936.1 NC_000012.12 95.11 True relocation, inconsistency = 187480 34866880 34883178 36884498 36867860 NC_060936.1 NC_000012.12 96.57 True relocation, inconsistency = -918996 35778191 35785875 36892184 36884499 NC_060936.1 NC_000012.12 98.0 True local misassembly 35769463 35777851 36900574 36892185 NC_060936.1 NC_000012.12 97.72 True relocation, inconsistency = -972554 36738216 36742016 36904374 36900575 NC_060936.1 NC_000012.12 97.74 True relocation, inconsistency = 222413 36506374 36515187 36913803 36904990 NC_060936.1 NC_000012.12 97.83 True relocation, inconsistency = -136853 36638728 36643226 36918306 36913804 NC_060936.1 NC_000012.12 96.86 True relocation, inconsistency = 1863405 34774362 34775322 36919266 36918307 NC_060936.1 NC_000012.12 96.57 True local misassembly 34771165 34774021 36922118 36919267 NC_060936.1 NC_000012.12 97.23 True local misassembly 34767848 34770486 36924757 36922119 NC_060936.1 NC_000012.12 97.95 True local misassembly 34765932 34767847 36927008 36925092 NC_060936.1 NC_000012.12 98.07 True local misassembly 34760232 34765591 36932370 36927009 NC_060936.1 NC_000012.12 98.51 True relocation, inconsistency = -1789393 36533928 36549470 36948397 36932525 NC_060936.1 NC_000012.12 95.44 True relocation, inconsistency = 1342747 35190019 35191117 36949560 36948461 NC_060936.1 NC_000012.12 98.36 True local misassembly 35173866 35189678 36965372 36949561 NC_060936.1 NC_000012.12 97.98 True relocation, inconsistency = -1160735 36333429 36334600 36966529 36965373 NC_060936.1 NC_000012.12 97.32 True relocation, scaffold gap is present, inconsistency = 658319 35668252 35674793 36973390 36966846 NC_060936.1 NC_000012.12 96.4 True relocation, inconsistency = 653054 34998893 35015197 36989704 36973391 NC_060936.1 NC_000012.12 98.0 True relocation, inconsistency = 121603 34857364 34877289 37009978 36989705 NC_060936.1 NC_000012.12 96.55 True relocation, inconsistency = -214984 35066133 35071572 37016191 37010754 NC_060936.1 NC_000012.12 98.48 True relocation, inconsistency = -1755671 36807264 36821803 37031076 37016192 NC_060936.1 NC_000012.12 95.41 True relocation, inconsistency = 1557687 35241048 35249576 37039606 37031077 NC_060936.1 NC_000012.12 98.11 True relocation, inconsistency = -1923774 37159053 37164821 37045379 37039607 NC_060936.1 NC_000012.12 96.44 True local misassembly 37155643 37159052 37049126 37045720 NC_060936.1 NC_000012.12 97.22 True relocation, inconsistency = 429579 36720303 36726063 37054902 37049127 NC_060936.1 NC_000012.12 97.84 True relocation, inconsistency = 1726825 34972497 34993477 37075886 37054903 NC_060936.1 NC_000012.12 98.02 True relocation, inconsistency = -193247 35155100 35165471 37086865 37076159 NC_060936.1 NC_000012.12 95.81 True relocation, inconsistency = -868305 36014589 36023404 37095675 37086866 NC_060936.1 NC_000012.12 98.19 True relocation, inconsistency = -532165 36530808 36546753 37111629 37095676 NC_060936.1 NC_000012.12 97.44 True local misassembly 36525641 36530807 37117134 37111970 NC_060936.1 NC_000012.12 97.66 True local misassembly 36519533 36525301 37122904 37117135 NC_060936.1 NC_000012.12 97.26 True relocation, inconsistency = 1872606 34637765 34646692 37132062 37123139 NC_060936.1 NC_000012.12 95.9 True local misassembly 34631668 34637085 37137483 37132063 NC_060936.1 NC_000012.12 96.13 True local misassembly 34628780 34631667 37141052 37138164 NC_060936.1 NC_000012.12 95.8 True relocation, inconsistency = -2536160 37161062 37164939 37144928 37141053 NC_060936.1 NC_000012.12 95.9 True relocation, inconsistency = 1135602 36024085 36025258 37146303 37145130 NC_060936.1 NC_000012.12 98.04 True local misassembly 36012347 36023404 37157367 37146304 NC_060936.1 NC_000012.12 98.17 True relocation, inconsistency = 1107078 34878935 34905152 37184048 37157484 NC_060936.1 NC_000012.12 96.59 True relocation, inconsistency = -450330 35328061 35329264 37185252 37184049 NC_060936.1 NC_000012.12 97.56 True relocation, scaffold gap is present, inconsistency = 1808843 37188108 37193674 37235253 37240826 NC_060936.1 NC_000012.12 97.83 True fake: scaffold gap size wrong estimation (local) 37197997 37202986 37246169 37251158 NC_060936.1 NC_000012.12 99.9 True local misassembly 37204740 37208875 37251159 37255295 NC_060936.1 NC_000012.12 99.73 True fake: scaffold gap size wrong estimation (local) 37210074 37286744 37257056 37333222 NC_060936.1 NC_000012.12 98.81 True fake: scaffold gap size wrong estimation (local) 37287000 37332083 37334768 37379851 NC_060936.1 NC_000012.12 99.88 True fake: scaffold gap size wrong estimation (local) 37332725 37382098 37380461 37429834 NC_060936.1 NC_000012.12 99.89 True indel: indel (> 5bp) 37382420 59529323 37430149 59542015 NC_060936.1 NC_000012.12 99.46 True relocation, inconsistency = -10705 59529455 76096361 59552852 76121313 NC_060936.1 NC_000012.12 99.65 True local misassembly 76098102 76651859 76121828 76673951 NC_060936.1 NC_000012.12 99.59 True indel: indel (> 5bp) 76652138 84595108 76674263 84615705 NC_060936.1 NC_000012.12 99.74 True indel: indel (> 5bp) 84595287 86827827 84615706 86846822 NC_060936.1 NC_000012.12 99.74 True inversion 86827842 86839667 86858770 86846823 NC_060936.1 NC_000012.12 98.65 True inversion 86839654 111519043 86858771 111538484 NC_060936.1 NC_000012.12 99.6 True local misassembly 111519133 119907040 111542205 119919720 NC_060936.1 NC_000012.12 99.67 True indel: indel (> 5bp) 119907167 123440096 119920004 123443512 NC_060936.1 NC_000012.12 99.44 True fake: scaffold gap size wrong estimation (local) 123440305 123449422 123443734 123452823 NC_060936.1 NC_000012.12 99.43 True local misassembly 123452058 123475076 123453161 123476174 NC_060936.1 NC_000012.12 99.77 True fake: scaffold gap size wrong estimation (local) 123475244 128112646 123476275 128084121 NC_060936.1 NC_000012.12 98.98 True indel: indel (> 5bp) 128113157 131694379 128084447 131647597 NC_060936.1 NC_000012.12 98.94 True local misassembly 131695350 132274249 131651850 132223359 NC_060936.1 NC_000012.12 98.22 True fake: scaffold gap size wrong estimation (local) 132274518 133322644 132224373 133265306 NC_060936.1 NC_000012.12 97.41 True CONTIG NC_000012.12 133275309 misassembled 11303250 11308758 16000130 16005617 NC_060937.1 NC_000013.11 96.56 True local misassembly 11303120 11308803 16005618 16011299 NC_060937.1 NC_000013.11 97.66 True local misassembly 11303165 11308431 16011300 16016564 NC_060937.1 NC_000013.11 96.63 True translocation, scaffold gap is present 8154697 8158523 16022644 16026471 NC_060938.1 NC_000013.11 96.46 True local misassembly 8162267 8166186 16026472 16030385 NC_060938.1 NC_000013.11 96.74 True local misassembly 8162264 8166179 16030386 16034293 NC_060938.1 NC_000013.11 96.78 True local misassembly 8162257 8179295 16034294 16051331 NC_060938.1 NC_000013.11 97.09 True local misassembly 8184057 8190292 16051332 16057570 NC_060938.1 NC_000013.11 96.99 True indel: indel (> 5bp) 8190293 8191793 16057741 16059240 NC_060938.1 NC_000013.11 98.07 True local misassembly 8195707 8207076 16059241 16070617 NC_060938.1 NC_000013.11 97.11 True translocation 8227211 8234687 16078307 16070831 NC_060945.1 NC_000013.11 97.42 True indel: indel (> 5bp) 8219381 8227038 16085968 16078308 NC_060945.1 NC_000013.11 96.85 True indel: indel (> 5bp) 8215466 8219208 16089711 16085969 NC_060945.1 NC_000013.11 97.38 True indel: indel (> 5bp) 8212043 8215293 16092972 16089712 NC_060945.1 NC_000013.11 96.87 True relocation, inconsistency = 13072 8194562 8198970 16097374 16092973 NC_060945.1 NC_000013.11 97.37 True indel: indel (> 5bp) 8190944 8194389 16100820 16097375 NC_060945.1 NC_000013.11 97.97 True local misassembly 8186699 8190610 16104737 16100821 NC_060945.1 NC_000013.11 98.37 True local misassembly 8186864 8190610 16108487 16104740 NC_060945.1 NC_000013.11 98.24 True local misassembly 8184360 8186530 16110659 16108488 NC_060945.1 NC_000013.11 96.87 True translocation, scaffold gap is present 9995546 10049655 16164892 16110760 NC_060946.1 NC_000013.11 97.5 True translocation, scaffold gap is present 7504404 7505151 16228628 16229375 NC_060938.1 NC_000013.11 98.13 True indel: indel (> 5bp) 7505152 7506203 16229546 16230597 NC_060938.1 NC_000013.11 98.57 True local misassembly 7506204 7508094 16231110 16233000 NC_060938.1 NC_000013.11 98.1 True indel: indel (> 5bp) 7508095 7521149 16233172 16246228 NC_060938.1 NC_000013.11 97.96 True indel: indel (> 5bp) 7521150 7524047 16246398 16249297 NC_060938.1 NC_000013.11 98.1 True translocation, scaffold gap is present 12313623 12317933 16253710 16249398 NC_060946.1 NC_000013.11 98.72 True indel: stretch of mismatches 12311266 12313327 16256067 16254006 NC_060946.1 NC_000013.11 98.5 True translocation, scaffold gap is present 8267768 8268841 16257928 16256855 NC_060945.1 NC_000013.11 97.58 True local misassembly 8267649 8268824 16259412 16258237 NC_060945.1 NC_000013.11 96.85 True translocation, scaffold gap is present 14375758 14376438 16260192 16259513 NC_060939.1 NC_000013.11 98.38 True local misassembly 14377450 14378329 16261404 16260525 NC_060939.1 NC_000013.11 97.27 True indel: indel (<= 5bp) 14375915 14376954 16262938 16261899 NC_060939.1 NC_000013.11 99.81 True translocation 8506162 8509267 16266197 16263092 NC_060945.1 NC_000013.11 98.68 True translocation 13016469 13017256 16270527 16271315 NC_060937.1 NC_000013.11 96.45 True indel: indel (<= 5bp) 13017717 13019040 16271774 16273099 NC_060937.1 NC_000013.11 96.68 True translocation 14375820 14378329 16276026 16273511 NC_060939.1 NC_000013.11 98.25 True translocation 8507718 8509091 16277628 16276261 NC_060945.1 NC_000013.11 95.79 True indel: indel (<= 5bp) 8506354 8507383 16278994 16277965 NC_060945.1 NC_000013.11 99.61 True translocation 7904596 7906937 16279501 16281841 NC_060938.1 NC_000013.11 97.48 True translocation, scaffold gap is present 15512052 15512560 16282682 16282174 NC_060946.1 NC_000013.11 97.64 True relocation, inconsistency = 511182 14995884 15000821 16287676 16282731 NC_060946.1 NC_000013.11 96.11 True relocation, inconsistency = 1980506 12993724 13015377 16309373 16287677 NC_060946.1 NC_000013.11 96.22 True translocation 10627554 10649988 16332400 16309957 NC_060938.1 NC_000013.11 97.22 True translocation 14912941 14919904 16339375 16332401 NC_060946.1 NC_000013.11 96.39 True relocation, inconsistency = 1810129 13083949 13102811 16358250 16339376 NC_060946.1 NC_000013.11 96.71 True translocation 10118527 10135879 16375629 16358251 NC_060938.1 NC_000013.11 96.27 True translocation 12979795 12980699 16376538 16375630 NC_060946.1 NC_000013.11 96.6 True local misassembly 12971245 12983884 16389182 16376539 NC_060946.1 NC_000013.11 96.65 True relocation, inconsistency = -2382603 15350592 15353847 16392438 16389183 NC_060946.1 NC_000013.11 96.85 True relocation, inconsistency = 2452441 12878283 12898150 16412334 16392439 NC_060946.1 NC_000013.11 96.9 True relocation, inconsistency = -2483800 15347457 15362082 16426967 16412335 NC_060946.1 NC_000013.11 96.71 True relocation, inconsistency = -20460 15343567 15367916 16451326 16426968 NC_060946.1 NC_000013.11 97.09 True relocation, inconsistency = 2417002 12922733 12926564 16455161 16451327 NC_060946.1 NC_000013.11 96.75 True local misassembly 12918485 12922390 16459069 16455162 NC_060946.1 NC_000013.11 97.85 True relocation, inconsistency = -2002654 14917261 14920897 16462953 16459311 NC_060946.1 NC_000013.11 97.28 True relocation, inconsistency = -181300 15063705 15098560 16497319 16462954 NC_060946.1 NC_000013.11 95.6 True relocation, inconsistency = 2179522 12876340 12884182 16505167 16497320 NC_060946.1 NC_000013.11 96.99 True relocation, inconsistency = -2540054 15396440 15416152 16525129 16505409 NC_060946.1 NC_000013.11 97.11 True translocation 10193844 10201404 16532701 16525130 NC_060938.1 NC_000013.11 97.55 True translocation 13003439 13026358 16555646 16532702 NC_060946.1 NC_000013.11 96.48 True relocation, inconsistency = -2419785 15412880 15423223 16565998 16555647 NC_060946.1 NC_000013.11 97.4 True relocation, inconsistency = 2448737 12947425 12963389 16582736 16566752 NC_060946.1 NC_000013.11 96.52 True relocation, inconsistency = -2061251 14994266 15008518 16597158 16582894 NC_060946.1 NC_000013.11 96.24 True relocation, inconsistency = 1966876 13015754 13027389 16608801 16597159 NC_060946.1 NC_000013.11 96.46 True relocation, inconsistency = -2397974 15408377 15413407 16614153 16609122 NC_060946.1 NC_000013.11 96.01 True relocation, inconsistency = 113710 15279161 15294666 16629492 16614154 NC_060946.1 NC_000013.11 96.22 True relocation, inconsistency = -58823 15334202 15337704 16633277 16629772 NC_060946.1 NC_000013.11 97.17 True relocation, inconsistency = 2333521 12986610 13000680 16647373 16633278 NC_060946.1 NC_000013.11 96.74 True relocation, inconsistency = -24528 12989270 13011137 16669257 16647374 NC_060946.1 NC_000013.11 96.44 True relocation, inconsistency = -2093330 15072308 15082599 16679552 16669258 NC_060946.1 NC_000013.11 96.57 True translocation 11205441 11221326 16695445 16679553 NC_060938.1 NC_000013.11 97.7 True translocation 15481901 15502317 16715828 16695446 NC_060946.1 NC_000013.11 96.53 True translocation 10136185 10163021 16742519 16715829 NC_060938.1 NC_000013.11 96.02 True translocation 12920973 12930557 16752112 16742520 NC_060946.1 NC_000013.11 96.83 True relocation, inconsistency = -2447007 15342848 15367979 16777290 16752113 NC_060946.1 NC_000013.11 97.13 True relocation, inconsistency = -38531 15371071 15381378 16787599 16777291 NC_060946.1 NC_000013.11 97.35 True local misassembly 15368821 15370386 16789164 16787600 NC_060946.1 NC_000013.11 97.43 True relocation, inconsistency = 2352288 12996972 13016532 16808752 16789165 NC_060946.1 NC_000013.11 96.4 True relocation, inconsistency = 97107 12894327 12899864 16814293 16808753 NC_060946.1 NC_000013.11 96.78 True local misassembly 12887752 12898416 16824973 16814294 NC_060946.1 NC_000013.11 97.26 True relocation, inconsistency = -2508692 15380033 15396443 16841220 16824974 NC_060946.1 NC_000013.11 96.28 True relocation, inconsistency = 2477338 12889711 12902694 16854211 16841221 NC_060946.1 NC_000013.11 96.97 True relocation, inconsistency = -2807829 15685010 15697539 16866743 16854212 NC_060946.1 NC_000013.11 97.33 True relocation, inconsistency = 278678 15383671 15406331 16889418 16866744 NC_060946.1 NC_000013.11 97.14 True relocation, inconsistency = 43987 15333593 15339683 16895507 16889419 NC_060946.1 NC_000013.11 97.11 True translocation 11714192 11725587 16906903 16895508 NC_060938.1 NC_000013.11 97.73 True translocation 12989855 13001967 16919375 16907252 NC_060946.1 NC_000013.11 96.68 True translocation 12429868 12440628 16930371 16919595 NC_060938.1 NC_000013.11 97.68 True translocation 13003428 13021128 16948090 16930372 NC_060946.1 NC_000013.11 96.54 True relocation, inconsistency = -2460020 15455907 15463447 16955633 16948091 NC_060946.1 NC_000013.11 97.07 True relocation, inconsistency = 97854 15340138 15358016 16973548 16955670 NC_060946.1 NC_000013.11 97.19 True relocation, inconsistency = 246660 15090837 15093477 16976190 16973549 NC_060946.1 NC_000013.11 97.13 True translocation 10313799 10319391 16981955 16976354 NC_060938.1 NC_000013.11 97.05 True indel: indel (> 5bp) 10310049 10313628 16985537 16981956 NC_060938.1 NC_000013.11 96.62 True indel: indel (> 5bp) 10305363 10309879 16990061 16985538 NC_060938.1 NC_000013.11 96.04 True translocation 12942840 12967631 17014895 16990062 NC_060946.1 NC_000013.11 96.4 True local misassembly 12938139 12941325 17018233 17015048 NC_060946.1 NC_000013.11 96.67 True local misassembly 12926707 12938138 17031045 17019599 NC_060946.1 NC_000013.11 97.18 True local misassembly 12919235 12925342 17037156 17031046 NC_060946.1 NC_000013.11 97.3 True local misassembly 12900856 12917870 17054180 17037157 NC_060946.1 NC_000013.11 96.62 True relocation, inconsistency = 24532 12871297 12876323 17059213 17054181 NC_060946.1 NC_000013.11 97.21 True relocation, inconsistency = -36800 12894750 12908096 17072566 17059214 NC_060946.1 NC_000013.11 96.93 True local misassembly 12869267 12887934 17091256 17072567 NC_060946.1 NC_000013.11 96.92 True translocation 10266089 10277182 17102193 17091257 NC_060938.1 NC_000013.11 95.36 True translocation 15398072 15415435 17120076 17102705 NC_060946.1 NC_000013.11 97.13 True relocation, inconsistency = 2474623 12913848 12923448 17129680 17120077 NC_060946.1 NC_000013.11 97.08 True relocation, inconsistency = -2528486 15431543 15440851 17140475 17131163 NC_060946.1 NC_000013.11 97.1 True relocation, inconsistency = 1367320 14048804 14064222 17155906 17140476 NC_060946.1 NC_000013.11 97.0 True relocation, inconsistency = -1592123 15632793 15640926 17164047 17155907 NC_060946.1 NC_000013.11 97.4 True relocation, inconsistency = 546474 15072648 15086318 17177733 17164048 NC_060946.1 NC_000013.11 97.19 True translocation 12612922 12618534 17183178 17177734 NC_060938.1 NC_000013.11 96.03 True translocation 14026808 14041841 17198220 17183179 NC_060946.1 NC_000013.11 97.32 True relocation, inconsistency = 1002701 13017549 13024106 17204786 17198221 NC_060946.1 NC_000013.11 96.58 True local misassembly 13009837 13017548 17213867 17206153 NC_060946.1 NC_000013.11 96.94 True local misassembly 13002643 13008474 17219719 17213868 NC_060946.1 NC_000013.11 96.29 True relocation, inconsistency = -2417028 15410494 15419669 17228898 17219721 NC_060946.1 NC_000013.11 97.45 True local misassembly 15393747 15409130 17244291 17228899 NC_060946.1 NC_000013.11 97.3 True indel: indel (> 5bp) 15381247 15393746 17256832 17244329 NC_060946.1 NC_000013.11 97.48 True relocation, inconsistency = -14998 15393924 15396244 17259154 17256833 NC_060946.1 NC_000013.11 97.26 True local misassembly 15380288 15388469 17267342 17259155 NC_060946.1 NC_000013.11 97.33 True relocation, inconsistency = 272915 15092061 15107372 17282654 17267343 NC_060946.1 NC_000013.11 97.03 True relocation, inconsistency = 80465 14985526 15011595 17308787 17282655 NC_060946.1 NC_000013.11 96.18 True relocation, inconsistency = -421547 15391651 15407072 17324196 17308788 NC_060946.1 NC_000013.11 97.16 True relocation, inconsistency = 2545330 12825567 12846076 17344817 17324441 NC_060946.1 NC_000013.11 96.08 True translocation 12426898 12440457 17358389 17344818 NC_060938.1 NC_000013.11 97.59 True translocation 12903069 12925145 17380493 17358390 NC_060946.1 NC_000013.11 96.78 True relocation, inconsistency = -2051737 14932866 14954805 17402460 17380494 NC_060946.1 NC_000013.11 96.65 True relocation, inconsistency = -77660 14996618 15010525 17416376 17402461 NC_060946.1 NC_000013.11 96.51 True relocation, scaffold gap is present, inconsistency = 2683338 12311582 12312180 17418074 17417476 NC_060946.1 NC_000013.11 99.33 True translocation, scaffold gap is present 11297680 11301492 17422527 17418717 NC_060945.1 NC_000013.11 96.8 True local misassembly 11291355 11293012 17428025 17426365 NC_060945.1 NC_000013.11 97.17 True local misassembly 11287460 11289433 17432934 17430963 NC_060945.1 NC_000013.11 97.11 True indel: indel (> 5bp) 11284400 11287288 17435824 17432935 NC_060945.1 NC_000013.11 97.51 True local misassembly 11278561 11284399 17442172 17436334 NC_060945.1 NC_000013.11 97.05 True local misassembly 11274172 11278297 17447060 17442937 NC_060945.1 NC_000013.11 97.31 True local misassembly 11270632 11274171 17451783 17448245 NC_060945.1 NC_000013.11 97.4 True indel: indel (> 5bp) 11267929 11270460 17454312 17451784 NC_060945.1 NC_000013.11 96.29 True indel: indel (> 5bp) 11265478 11267675 17456755 17454559 NC_060945.1 NC_000013.11 97.5 True local misassembly 11263835 11264797 17457722 17456756 NC_060945.1 NC_000013.11 97.31 True indel: indel (> 5bp) 11256199 11263664 17465190 17457723 NC_060945.1 NC_000013.11 97.09 True local misassembly 11254495 11255517 17466216 17465191 NC_060945.1 NC_000013.11 97.56 True indel: indel (> 5bp) 11253583 11254324 17466958 17466217 NC_060945.1 NC_000013.11 96.9 True local misassembly 11251947 11252725 17468087 17467306 NC_060945.1 NC_000013.11 96.42 True indel: indel (> 5bp) 11248207 11251775 17471650 17468088 NC_060945.1 NC_000013.11 98.01 True indel: indel (> 5bp) 11237667 11248035 17482012 17471651 NC_060945.1 NC_000013.11 98.33 True local misassembly 11229956 11236815 17488867 17482013 NC_060945.1 NC_000013.11 97.71 True local misassembly 11228173 11229580 17491162 17489755 NC_060945.1 NC_000013.11 97.8 True local misassembly 11226041 11227491 17492613 17491163 NC_060945.1 NC_000013.11 97.93 True local misassembly 11222483 11226040 17496851 17493294 NC_060945.1 NC_000013.11 98.03 True local misassembly 11220837 11221802 17497819 17496852 NC_060945.1 NC_000013.11 98.66 True indel: indel (> 5bp) 11217992 11220665 17500496 17497820 NC_060945.1 NC_000013.11 98.13 True local misassembly 11216866 11217991 17502473 17501348 NC_060945.1 NC_000013.11 97.96 True local misassembly 11213814 11216108 17505018 17502723 NC_060945.1 NC_000013.11 97.74 True local misassembly 11210073 11213542 17509264 17505799 NC_060945.1 NC_000013.11 98.21 True local misassembly 11201450 11209392 17517216 17509265 NC_060945.1 NC_000013.11 97.6 True local misassembly 11199077 11200769 17518910 17517217 NC_060945.1 NC_000013.11 98.58 True indel: indel (> 5bp) 11198389 11198905 17519427 17518911 NC_060945.1 NC_000013.11 97.49 True fake: not a misassembly (possible transposable element) 11241176 11242788 17522371 17520757 NC_060945.1 NC_000013.11 97.46 True fake: not a misassembly (possible transposable element) 11194319 11195276 17523330 17522372 NC_060945.1 NC_000013.11 98.02 True relocation, inconsistency = -46237 11237667 11240542 17526220 17523344 NC_060945.1 NC_000013.11 98.64 True indel: indel (> 5bp) 11235117 11237495 17528598 17526221 NC_060945.1 NC_000013.11 98.36 True indel: indel (> 5bp) 11223883 11234945 17539663 17528599 NC_060945.1 NC_000013.11 98.21 True local misassembly 11222707 11223882 17541522 17540345 NC_060945.1 NC_000013.11 97.79 True local misassembly 11220703 11222706 17544886 17542883 NC_060945.1 NC_000013.11 98.45 True local misassembly 11218736 11220022 17546173 17544887 NC_060945.1 NC_000013.11 98.68 True local misassembly 11204687 11218102 17560562 17547146 NC_060945.1 NC_000013.11 97.77 True indel: indel (> 5bp) 11199745 11204515 17565339 17560563 NC_060945.1 NC_000013.11 98.12 True relocation, inconsistency = -71893 11262924 11270633 17574053 17566344 NC_060945.1 NC_000013.11 98.08 True local misassembly 11248881 11261063 17586916 17574726 NC_060945.1 NC_000013.11 97.73 True relocation, inconsistency = 69013 11178055 11179867 17588726 17586917 NC_060945.1 NC_000013.11 97.75 True local misassembly 11176177 11177716 17590268 17588727 NC_060945.1 NC_000013.11 98.53 True relocation, inconsistency = 42476 11126568 11133700 17597396 17590269 NC_060945.1 NC_000013.11 97.55 True local misassembly 11122262 11126567 17602378 17598075 NC_060945.1 NC_000013.11 98.19 True indel: indel (> 5bp) 11120173 11122090 17604287 17602379 NC_060945.1 NC_000013.11 97.65 True local misassembly 11112402 11119287 17611543 17604663 NC_060945.1 NC_000013.11 98.55 True relocation, inconsistency = -45030 11154630 11156618 17614345 17612357 NC_060945.1 NC_000013.11 98.09 True local misassembly 11153253 11154629 17616401 17615026 NC_060945.1 NC_000013.11 97.39 True local misassembly 11150388 11153252 17619608 17616744 NC_060945.1 NC_000013.11 98.29 True local misassembly 11149739 11150387 17621278 17620628 NC_060945.1 NC_000013.11 98.62 True local misassembly 11147973 11149364 17623550 17622163 NC_060945.1 NC_000013.11 97.92 True local misassembly 11146137 11147972 17625730 17623894 NC_060945.1 NC_000013.11 98.26 True local misassembly 11140845 11146136 17632043 17626751 NC_060945.1 NC_000013.11 97.96 True local misassembly 11138757 11140506 17633793 17632044 NC_060945.1 NC_000013.11 97.94 True indel: indel (> 5bp) 11135020 11138585 17637365 17633794 NC_060945.1 NC_000013.11 97.56 True indel: indel (> 5bp) 11133817 11134849 17638398 17637366 NC_060945.1 NC_000013.11 97.77 True local misassembly 11131975 11133479 17639904 17638399 NC_060945.1 NC_000013.11 98.41 True local misassembly 11126468 11131974 17646263 17640756 NC_060945.1 NC_000013.11 97.66 True local misassembly 11120417 11125788 17651641 17646264 NC_060945.1 NC_000013.11 98.44 True local misassembly 11117404 11119225 17653462 17651642 NC_060945.1 NC_000013.11 97.37 True local misassembly 11108453 11117403 17662923 17653970 NC_060945.1 NC_000013.11 98.39 True local misassembly 11102378 11107773 17668323 17662924 NC_060945.1 NC_000013.11 98.11 True indel: indel (> 5bp) 11089368 11102206 17681169 17668324 NC_060945.1 NC_000013.11 98.44 True local misassembly 11076885 11089367 17694172 17681679 NC_060945.1 NC_000013.11 98.4 True local misassembly 11074347 11076033 17695863 17694173 NC_060945.1 NC_000013.11 98.64 True indel: indel (> 5bp) 11072465 11074175 17697573 17695864 NC_060945.1 NC_000013.11 98.54 True indel: indel (> 5bp) 11068726 11072294 17701144 17697574 NC_060945.1 NC_000013.11 98.66 True indel: indel (> 5bp) 11061327 11068555 17708380 17701145 NC_060945.1 NC_000013.11 98.24 True local misassembly 11058201 11060137 17710323 17708381 NC_060945.1 NC_000013.11 96.45 True indel: indel (> 5bp) 11057392 11058029 17710963 17710324 NC_060945.1 NC_000013.11 97.97 True local misassembly 11047581 11056878 17720260 17710964 NC_060945.1 NC_000013.11 97.58 True local misassembly 11044592 11047580 17723931 17720942 NC_060945.1 NC_000013.11 98.73 True indel: indel (> 5bp) 11042349 11044420 17726002 17723932 NC_060945.1 NC_000013.11 98.07 True local misassembly 11035084 11041669 17732583 17726003 NC_060945.1 NC_000013.11 98.22 True indel: indel (> 5bp) 11032012 11034912 17735484 17732584 NC_060945.1 NC_000013.11 97.86 True relocation, inconsistency = -74613 11096768 11106624 17745333 17735485 NC_060945.1 NC_000013.11 97.88 True relocation, inconsistency = 72579 11021994 11023679 17747530 17745843 NC_060945.1 NC_000013.11 98.16 True indel: indel (> 5bp) 11021145 11021822 17748208 17747531 NC_060945.1 NC_000013.11 96.17 True indel: indel (> 5bp) 11014514 11020970 17754664 17748209 NC_060945.1 NC_000013.11 97.79 True indel: indel (> 5bp) 11010761 11014342 17758250 17754665 NC_060945.1 NC_000013.11 97.96 True indel: indel (> 5bp) 11008904 11010589 17759937 17758251 NC_060945.1 NC_000013.11 96.92 True indel: indel (> 5bp) 11007034 11008732 17761638 17759938 NC_060945.1 NC_000013.11 98.0 True indel: indel (> 5bp) 11001424 11006862 17767072 17761639 NC_060945.1 NC_000013.11 96.97 True indel: indel (> 5bp) 10999554 11001252 17768765 17767073 NC_060945.1 NC_000013.11 97.12 True indel: indel (> 5bp) 10992074 10999382 17776073 17768766 NC_060945.1 NC_000013.11 98.14 True indel: indel (> 5bp) 10984594 10991902 17783383 17776074 NC_060945.1 NC_000013.11 98.32 True indel: indel (> 5bp) 10977794 10984422 17789996 17783384 NC_060945.1 NC_000013.11 97.75 True indel: indel (> 5bp) 10971504 10977622 17796113 17789997 NC_060945.1 NC_000013.11 98.07 True indel: indel (> 5bp) 10968448 10971332 17799002 17796114 NC_060945.1 NC_000013.11 98.17 True indel: indel (> 5bp) 10967768 10968276 17799511 17799003 NC_060945.1 NC_000013.11 98.04 True relocation, inconsistency = -73435 11038055 11041202 17802660 17799512 NC_060945.1 NC_000013.11 98.57 True local misassembly 11035764 11037374 17804270 17802661 NC_060945.1 NC_000013.11 98.01 True indel: indel (> 5bp) 11035086 11035592 17804778 17804271 NC_060945.1 NC_000013.11 99.02 True indel: indel (> 5bp) 11016840 11034913 17822851 17804779 NC_060945.1 NC_000013.11 98.01 True relocation, inconsistency = -113023 11120362 11128378 17832354 17824336 NC_060945.1 NC_000013.11 98.09 True local misassembly 11114284 11119172 17837246 17832355 NC_060945.1 NC_000013.11 98.39 True indel: indel (> 5bp) 11113611 11114112 17837748 17837247 NC_060945.1 NC_000013.11 98.41 True indel: indel (> 5bp) 11105096 11113438 17846094 17837749 NC_060945.1 NC_000013.11 98.08 True indel: indel (<= 5bp) 11073497 11104940 17877538 17846251 NC_060945.1 NC_000013.11 97.57 True relocation, inconsistency = -57270 11119264 11130601 17889052 17877704 NC_060945.1 NC_000013.11 97.66 True local misassembly 11118012 11119263 17890816 17889562 NC_060945.1 NC_000013.11 98.65 True local misassembly 11093723 11117172 17914773 17891314 NC_060945.1 NC_000013.11 98.24 True indel: indel (> 5bp) 11078074 11093551 17930245 17914774 NC_060945.1 NC_000013.11 98.25 True indel: indel (> 5bp) 11075027 11077903 17933122 17930246 NC_060945.1 NC_000013.11 98.12 True indel: indel (> 5bp) 11073157 11074855 17934824 17933123 NC_060945.1 NC_000013.11 98.35 True indel: indel (> 5bp) 11071963 11072985 17935849 17934825 NC_060945.1 NC_000013.11 98.34 True indel: indel (> 5bp) 11063130 11071792 17944519 17935850 NC_060945.1 NC_000013.11 98.39 True indel: indel (> 5bp) 11056946 11062958 17950534 17944520 NC_060945.1 NC_000013.11 98.15 True local misassembly 11055819 11056432 17951138 17950535 NC_060945.1 NC_000013.11 95.44 True relocation, inconsistency = -230280 11270632 11286098 17966613 17951139 NC_060945.1 NC_000013.11 97.7 True indel: indel (> 5bp) 11254494 11270460 17982592 17966614 NC_060945.1 NC_000013.11 97.93 True indel: indel (> 5bp) 11253814 11254322 17983101 17982593 NC_060945.1 NC_000013.11 98.23 True indel: indel (> 5bp) 11248887 11253642 17987849 17983102 NC_060945.1 NC_000013.11 97.96 True indel: indel (> 5bp) 11247017 11248715 17989546 17987850 NC_060945.1 NC_000013.11 97.29 True indel: indel (> 5bp) 11239531 11246845 17996862 17989547 NC_060945.1 NC_000013.11 98.44 True indel: indel (> 5bp) 11236987 11239360 17999234 17996863 NC_060945.1 NC_000013.11 98.36 True indel: indel (> 5bp) 11235785 11236815 18000264 17999235 NC_060945.1 NC_000013.11 96.61 True indel: indel (> 5bp) 11223897 11235613 18012000 18000265 NC_060945.1 NC_000013.11 98.36 True indel: indel (> 5bp) 11222707 11223725 18013017 18012001 NC_060945.1 NC_000013.11 98.04 True indel: indel (> 5bp) 11222027 11222535 18013526 18013018 NC_060945.1 NC_000013.11 98.62 True relocation, inconsistency = 226213 10983392 10995813 18025942 18013527 NC_060945.1 NC_000013.11 98.41 True local misassembly 10978984 10982552 18030008 18026440 NC_060945.1 NC_000013.11 98.8 True indel: indel (> 5bp) 10977794 10978812 18031027 18030009 NC_060945.1 NC_000013.11 99.02 True indel: indel (> 5bp) 10975244 10977622 18033410 18031028 NC_060945.1 NC_000013.11 98.78 True indel: indel (> 5bp) 10970314 10975072 18038161 18033411 NC_060945.1 NC_000013.11 98.47 True indel: indel (> 5bp) 10967768 10970146 18040533 18038162 NC_060945.1 NC_000013.11 98.36 True indel: indel (> 5bp) 10964696 10967596 18043437 18040534 NC_060945.1 NC_000013.11 97.83 True relocation, inconsistency = -227230 11190115 11191925 18045251 18043438 NC_060945.1 NC_000013.11 98.25 True local misassembly 11186727 11190114 18048981 18045593 NC_060945.1 NC_000013.11 97.52 True local misassembly 11184802 11186726 18051248 18049324 NC_060945.1 NC_000013.11 97.66 True translocation, scaffold gap is present 13550833 13741387 18358106 18171249 NC_060937.1 NC_000013.11 97.6 True relocation, scaffold gap is present, inconsistency = 3832675 17624063 40619076 18408107 41400152 NC_060937.1 NC_000013.11 99.38 True indel: indel (> 5bp) 40619442 48539623 41400537 49318420 NC_060937.1 NC_000013.11 99.68 True indel: indel (> 5bp) 48539781 81013139 49318672 81782737 NC_060937.1 NC_000013.11 99.63 True indel: indel (> 5bp) 81013221 85451185 81782840 86202239 NC_060937.1 NC_000013.11 99.3 True relocation, scaffold gap is present, inconsistency = -46437 85472059 97814164 86269550 98605372 NC_060937.1 NC_000013.11 99.67 True local misassembly 97815260 103976754 98605488 104756269 NC_060937.1 NC_000013.11 99.56 True indel: indel (> 5bp) 103976964 110937863 104756344 111703855 NC_060937.1 NC_000013.11 99.4 True relocation, scaffold gap is present, inconsistency = -85006 110902858 110905216 111753856 111756200 NC_060937.1 NC_000013.11 99.48 True indel: stretch of mismatches 110905217 110942435 111756201 111793420 NC_060937.1 NC_000013.11 97.9 True relocation, scaffold gap is present, inconsistency = 94313 111086770 112931584 111843442 113672557 NC_060937.1 NC_000013.11 98.36 True relocation, scaffold gap is present, inconsistency = -49224 112932824 113563334 113723021 114354073 NC_060937.1 NC_000013.11 95.78 True CONTIG NC_000013.11 114364328 misassembled 11303250 11308758 16000130 16005617 NC_060937.1 NC_000014.9 96.56 True local misassembly 11303120 11308803 16005618 16011299 NC_060937.1 NC_000014.9 97.66 True local misassembly 11303165 11308431 16011300 16016564 NC_060937.1 NC_000014.9 96.63 True translocation 14101630 14107582 16016583 16022537 NC_060939.1 NC_000014.9 97.9 True translocation, scaffold gap is present 9642760 9674068 16022662 16053976 NC_060938.1 NC_000014.9 99.78 True fake: scaffold gap size wrong estimation (local) 9674663 9681880 16054460 16061677 NC_060938.1 NC_000014.9 99.97 True fake: scaffold gap size wrong estimation (local) 9682459 9707090 16061994 16086625 NC_060938.1 NC_000014.9 99.91 True fake: scaffold gap size wrong estimation (local) 9709898 9716865 16089563 16096530 NC_060938.1 NC_000014.9 99.89 True relocation, scaffold gap is present, inconsistency = -849857 8867109 8875812 16096631 16105376 NC_060938.1 NC_000014.9 98.87 True fake: scaffold gap size wrong estimation (local) 8884879 8902500 16113239 16130858 NC_060938.1 NC_000014.9 99.88 True fake: scaffold gap size wrong estimation (local) 8904835 8911579 16133855 16140527 NC_060938.1 NC_000014.9 97.93 True relocation, scaffold gap is present, inconsistency = -756989 8154697 8158523 16140634 16144461 NC_060938.1 NC_000014.9 96.46 True local misassembly 8162267 8166186 16144462 16148375 NC_060938.1 NC_000014.9 96.74 True local misassembly 8162264 8166179 16148376 16152283 NC_060938.1 NC_000014.9 96.78 True local misassembly 8162257 8179295 16152284 16169321 NC_060938.1 NC_000014.9 97.09 True local misassembly 8184057 8190292 16169322 16175560 NC_060938.1 NC_000014.9 96.99 True indel: indel (> 5bp) 8190293 8191793 16175731 16177230 NC_060938.1 NC_000014.9 98.07 True local misassembly 8195707 8207076 16177231 16188607 NC_060938.1 NC_000014.9 97.11 True translocation 8227211 8234687 16196297 16188821 NC_060945.1 NC_000014.9 97.42 True indel: indel (> 5bp) 8219381 8227038 16203958 16196298 NC_060945.1 NC_000014.9 96.85 True indel: indel (> 5bp) 8215466 8219208 16207701 16203959 NC_060945.1 NC_000014.9 97.38 True indel: indel (> 5bp) 8212043 8215293 16210962 16207702 NC_060945.1 NC_000014.9 96.87 True relocation, inconsistency = 13072 8194562 8198970 16215364 16210963 NC_060945.1 NC_000014.9 97.37 True indel: indel (> 5bp) 8190944 8194389 16218810 16215365 NC_060945.1 NC_000014.9 97.97 True local misassembly 8186699 8190610 16222727 16218811 NC_060945.1 NC_000014.9 98.37 True local misassembly 8186864 8190610 16226477 16222730 NC_060945.1 NC_000014.9 98.24 True local misassembly 8184360 8186530 16228649 16226478 NC_060945.1 NC_000014.9 96.87 True translocation, scaffold gap is present 9995546 10049655 16282882 16228750 NC_060946.1 NC_000014.9 97.5 True translocation, scaffold gap is present 7504404 7505151 16346618 16347365 NC_060938.1 NC_000014.9 98.13 True indel: indel (> 5bp) 7505152 7506203 16347536 16348587 NC_060938.1 NC_000014.9 98.57 True local misassembly 7506204 7508094 16349100 16350990 NC_060938.1 NC_000014.9 98.1 True indel: indel (> 5bp) 7508095 7521149 16351162 16364218 NC_060938.1 NC_000014.9 97.96 True indel: indel (> 5bp) 7521150 7524047 16364388 16367287 NC_060938.1 NC_000014.9 98.1 True translocation, scaffold gap is present 12313623 12317933 16371700 16367388 NC_060946.1 NC_000014.9 98.72 True indel: stretch of mismatches 12311266 12313327 16374057 16371996 NC_060946.1 NC_000014.9 98.5 True translocation, scaffold gap is present 8267768 8268841 16375918 16374845 NC_060945.1 NC_000014.9 97.58 True local misassembly 8267649 8268824 16377402 16376227 NC_060945.1 NC_000014.9 96.85 True translocation, scaffold gap is present 14375758 14376438 16378182 16377503 NC_060939.1 NC_000014.9 98.38 True local misassembly 14377450 14378329 16379394 16378515 NC_060939.1 NC_000014.9 97.27 True indel: indel (<= 5bp) 14375915 14376954 16380928 16379889 NC_060939.1 NC_000014.9 99.81 True translocation 8506162 8509267 16384187 16381082 NC_060945.1 NC_000014.9 98.68 True translocation 13016469 13017256 16388517 16389305 NC_060937.1 NC_000014.9 96.45 True indel: indel (<= 5bp) 13017717 13019040 16389764 16391089 NC_060937.1 NC_000014.9 96.68 True translocation 14375820 14378329 16394016 16391501 NC_060939.1 NC_000014.9 98.25 True translocation 8507718 8509091 16395618 16394251 NC_060945.1 NC_000014.9 95.79 True indel: indel (<= 5bp) 8506354 8507383 16396984 16395955 NC_060945.1 NC_000014.9 99.61 True translocation 7904596 7906937 16397491 16399831 NC_060938.1 NC_000014.9 97.48 True relocation, scaffold gap is present, inconsistency = 2148787 10056057 10060242 16400164 16404348 NC_060938.1 NC_000014.9 99.81 True translocation, scaffold gap is present 15512052 15512560 16404957 16404449 NC_060946.1 NC_000014.9 97.64 True relocation, inconsistency = 511182 14995884 15000821 16409951 16405006 NC_060946.1 NC_000014.9 96.11 True relocation, inconsistency = 1980506 12993724 13015377 16431648 16409952 NC_060946.1 NC_000014.9 96.22 True translocation 10627554 10649988 16454675 16432232 NC_060938.1 NC_000014.9 97.22 True translocation 14912941 14919904 16461650 16454676 NC_060946.1 NC_000014.9 96.39 True relocation, inconsistency = 1810129 13083949 13102811 16480525 16461651 NC_060946.1 NC_000014.9 96.71 True translocation 10118527 10135879 16497904 16480526 NC_060938.1 NC_000014.9 96.27 True translocation 12979795 12980699 16498813 16497905 NC_060946.1 NC_000014.9 96.6 True local misassembly 12971245 12983884 16511457 16498814 NC_060946.1 NC_000014.9 96.65 True relocation, inconsistency = -2382603 15350592 15353847 16514713 16511458 NC_060946.1 NC_000014.9 96.85 True relocation, inconsistency = 2452441 12878283 12898150 16534609 16514714 NC_060946.1 NC_000014.9 96.9 True relocation, inconsistency = -2483800 15347457 15362082 16549242 16534610 NC_060946.1 NC_000014.9 96.71 True relocation, inconsistency = -20460 15343567 15367916 16573601 16549243 NC_060946.1 NC_000014.9 97.09 True relocation, inconsistency = 2417002 12922733 12926564 16577436 16573602 NC_060946.1 NC_000014.9 96.75 True local misassembly 12918485 12922390 16581344 16577437 NC_060946.1 NC_000014.9 97.85 True relocation, inconsistency = -2002654 14917261 14920897 16585228 16581586 NC_060946.1 NC_000014.9 97.28 True relocation, inconsistency = -181300 15063705 15098560 16619594 16585229 NC_060946.1 NC_000014.9 95.6 True relocation, inconsistency = -297462 15354436 15361166 16626324 16619595 NC_060946.1 NC_000014.9 97.32 True local misassembly 15338832 15354435 16643297 16627689 NC_060946.1 NC_000014.9 97.04 True translocation 10193844 10205509 16654976 16643298 NC_060938.1 NC_000014.9 97.55 True translocation 13003439 13026358 16677921 16654977 NC_060946.1 NC_000014.9 96.48 True relocation, inconsistency = -2419785 15412880 15423223 16688273 16677922 NC_060946.1 NC_000014.9 97.4 True relocation, inconsistency = 2448737 12947425 12963389 16705011 16689027 NC_060946.1 NC_000014.9 96.52 True relocation, inconsistency = -2061251 14994266 15008518 16719433 16705169 NC_060946.1 NC_000014.9 96.24 True relocation, inconsistency = 1966876 13015754 13027389 16731076 16719434 NC_060946.1 NC_000014.9 96.46 True relocation, inconsistency = -2397974 15408377 15413407 16736428 16731397 NC_060946.1 NC_000014.9 96.01 True relocation, inconsistency = 113710 15279161 15294666 16751767 16736429 NC_060946.1 NC_000014.9 96.22 True relocation, inconsistency = -58823 15334202 15337704 16755552 16752047 NC_060946.1 NC_000014.9 97.17 True relocation, inconsistency = 2333521 12986610 13000680 16769648 16755553 NC_060946.1 NC_000014.9 96.74 True relocation, inconsistency = -24528 12989270 13011137 16791532 16769649 NC_060946.1 NC_000014.9 96.44 True relocation, inconsistency = -2093330 15072308 15082599 16801827 16791533 NC_060946.1 NC_000014.9 96.57 True translocation 11205441 11221326 16817720 16801828 NC_060938.1 NC_000014.9 97.7 True translocation 15481901 15502317 16838103 16817721 NC_060946.1 NC_000014.9 96.53 True translocation 10136185 10163021 16864794 16838104 NC_060938.1 NC_000014.9 96.02 True translocation 12920973 12930557 16874387 16864795 NC_060946.1 NC_000014.9 96.83 True relocation, inconsistency = -2447007 15342848 15367979 16899565 16874388 NC_060946.1 NC_000014.9 97.13 True relocation, inconsistency = -38531 15371071 15381378 16909874 16899566 NC_060946.1 NC_000014.9 97.35 True local misassembly 15368821 15370386 16911439 16909875 NC_060946.1 NC_000014.9 97.43 True relocation, inconsistency = 2352288 12996972 13016532 16931027 16911440 NC_060946.1 NC_000014.9 96.4 True relocation, inconsistency = 97107 12894327 12899864 16936568 16931028 NC_060946.1 NC_000014.9 96.78 True local misassembly 12887752 12898416 16947248 16936569 NC_060946.1 NC_000014.9 97.26 True relocation, inconsistency = -2508692 15380033 15396443 16963495 16947249 NC_060946.1 NC_000014.9 96.28 True relocation, inconsistency = 2477338 12889711 12902694 16976486 16963496 NC_060946.1 NC_000014.9 96.97 True relocation, inconsistency = -2807829 15685010 15697539 16989018 16976487 NC_060946.1 NC_000014.9 97.33 True relocation, inconsistency = 278678 15383671 15406331 17011693 16989019 NC_060946.1 NC_000014.9 97.14 True relocation, inconsistency = 43987 15333593 15339683 17017782 17011694 NC_060946.1 NC_000014.9 97.11 True translocation 11714192 11725587 17029178 17017783 NC_060938.1 NC_000014.9 97.73 True translocation 12989855 13001967 17041650 17029527 NC_060946.1 NC_000014.9 96.68 True translocation 12429868 12440628 17052646 17041870 NC_060938.1 NC_000014.9 97.68 True translocation 13003428 13021128 17070365 17052647 NC_060946.1 NC_000014.9 96.54 True relocation, inconsistency = -2460020 15455907 15463447 17077908 17070366 NC_060946.1 NC_000014.9 97.07 True relocation, inconsistency = 97854 15340138 15358016 17095823 17077945 NC_060946.1 NC_000014.9 97.19 True relocation, inconsistency = 243932 15093560 15096205 17098469 17095824 NC_060946.1 NC_000014.9 97.21 True translocation 10313799 10319391 17104230 17098629 NC_060938.1 NC_000014.9 97.05 True indel: indel (> 5bp) 10310049 10313628 17107812 17104231 NC_060938.1 NC_000014.9 96.62 True indel: indel (> 5bp) 10305363 10309879 17112336 17107813 NC_060938.1 NC_000014.9 96.04 True translocation 12942840 12967631 17137170 17112337 NC_060946.1 NC_000014.9 96.4 True local misassembly 12938139 12941325 17140508 17137323 NC_060946.1 NC_000014.9 96.67 True local misassembly 12926707 12938138 17153320 17141874 NC_060946.1 NC_000014.9 97.18 True local misassembly 12919235 12925342 17159431 17153321 NC_060946.1 NC_000014.9 97.3 True local misassembly 12900856 12917870 17176455 17159432 NC_060946.1 NC_000014.9 96.62 True relocation, inconsistency = 24532 12871297 12876323 17181488 17176456 NC_060946.1 NC_000014.9 97.21 True relocation, inconsistency = -36800 12894750 12908096 17194841 17181489 NC_060946.1 NC_000014.9 96.93 True local misassembly 12869267 12887934 17213531 17194842 NC_060946.1 NC_000014.9 96.92 True translocation 10266089 10277182 17224468 17213532 NC_060938.1 NC_000014.9 95.36 True translocation 15398072 15415435 17242351 17224980 NC_060946.1 NC_000014.9 97.13 True relocation, inconsistency = 2474623 12913848 12923448 17251955 17242352 NC_060946.1 NC_000014.9 97.08 True relocation, inconsistency = -2528486 15431543 15440851 17262750 17253438 NC_060946.1 NC_000014.9 97.1 True relocation, inconsistency = 1367320 14048804 14064222 17278181 17262751 NC_060946.1 NC_000014.9 97.0 True relocation, inconsistency = -1592123 15632793 15640926 17286322 17278182 NC_060946.1 NC_000014.9 97.4 True relocation, inconsistency = 546474 15072648 15086318 17300008 17286323 NC_060946.1 NC_000014.9 97.19 True translocation 12612922 12618534 17305453 17300009 NC_060938.1 NC_000014.9 96.03 True translocation 14026808 14041841 17320495 17305454 NC_060946.1 NC_000014.9 97.32 True relocation, inconsistency = 1002701 13017549 13024106 17327061 17320496 NC_060946.1 NC_000014.9 96.58 True local misassembly 13009837 13017548 17336142 17328428 NC_060946.1 NC_000014.9 96.94 True local misassembly 13002643 13008474 17341994 17336143 NC_060946.1 NC_000014.9 96.29 True relocation, inconsistency = -2417028 15410494 15419669 17351173 17341996 NC_060946.1 NC_000014.9 97.45 True local misassembly 15393747 15409130 17366566 17351174 NC_060946.1 NC_000014.9 97.3 True indel: indel (> 5bp) 15381247 15393746 17379107 17366604 NC_060946.1 NC_000014.9 97.48 True relocation, inconsistency = -14998 15393924 15396244 17381429 17379108 NC_060946.1 NC_000014.9 97.26 True local misassembly 15380288 15388469 17389617 17381430 NC_060946.1 NC_000014.9 97.33 True relocation, inconsistency = 272915 15092061 15107372 17404929 17389618 NC_060946.1 NC_000014.9 97.03 True relocation, inconsistency = 80465 14985526 15011595 17431062 17404930 NC_060946.1 NC_000014.9 96.18 True relocation, inconsistency = -421547 15391651 15407072 17446471 17431063 NC_060946.1 NC_000014.9 97.16 True relocation, inconsistency = 2545330 12825567 12846076 17467092 17446716 NC_060946.1 NC_000014.9 96.08 True translocation 12426898 12440457 17480664 17467093 NC_060938.1 NC_000014.9 97.59 True translocation 12903069 12925145 17502768 17480665 NC_060946.1 NC_000014.9 96.78 True relocation, inconsistency = -2051737 14932866 14954805 17524735 17502769 NC_060946.1 NC_000014.9 96.65 True relocation, inconsistency = -77660 14996618 15010525 17538651 17524736 NC_060946.1 NC_000014.9 96.51 True relocation, scaffold gap is present, inconsistency = 2683338 12311582 12312180 17540349 17539751 NC_060946.1 NC_000014.9 99.33 True translocation, scaffold gap is present 11297680 11301492 17544802 17540992 NC_060945.1 NC_000014.9 96.8 True local misassembly 11291355 11293012 17550300 17548640 NC_060945.1 NC_000014.9 97.17 True local misassembly 11287460 11289433 17555209 17553238 NC_060945.1 NC_000014.9 97.11 True indel: indel (> 5bp) 11284400 11287288 17558099 17555210 NC_060945.1 NC_000014.9 97.51 True local misassembly 11278561 11284399 17564447 17558609 NC_060945.1 NC_000014.9 97.05 True local misassembly 11274172 11278297 17569335 17565212 NC_060945.1 NC_000014.9 97.31 True local misassembly 11270632 11274171 17574058 17570520 NC_060945.1 NC_000014.9 97.4 True indel: indel (> 5bp) 11267929 11270460 17576587 17574059 NC_060945.1 NC_000014.9 96.29 True indel: indel (> 5bp) 11265478 11267675 17579030 17576834 NC_060945.1 NC_000014.9 97.5 True local misassembly 11263835 11264797 17579997 17579031 NC_060945.1 NC_000014.9 97.31 True indel: indel (> 5bp) 11256199 11263664 17587465 17579998 NC_060945.1 NC_000014.9 97.09 True local misassembly 11254495 11255517 17588491 17587466 NC_060945.1 NC_000014.9 97.56 True indel: indel (> 5bp) 11253583 11254324 17589233 17588492 NC_060945.1 NC_000014.9 96.9 True local misassembly 11251947 11252725 17590362 17589581 NC_060945.1 NC_000014.9 96.42 True indel: indel (> 5bp) 11248207 11251775 17593925 17590363 NC_060945.1 NC_000014.9 98.01 True indel: indel (> 5bp) 11237667 11248035 17604287 17593926 NC_060945.1 NC_000014.9 98.33 True local misassembly 11229956 11236815 17611142 17604288 NC_060945.1 NC_000014.9 97.71 True local misassembly 11228173 11229580 17613437 17612030 NC_060945.1 NC_000014.9 97.8 True local misassembly 11226041 11227491 17614888 17613438 NC_060945.1 NC_000014.9 97.93 True local misassembly 11222483 11226040 17619126 17615569 NC_060945.1 NC_000014.9 98.03 True local misassembly 11220837 11221802 17620094 17619127 NC_060945.1 NC_000014.9 98.66 True indel: indel (> 5bp) 11217992 11220665 17622771 17620095 NC_060945.1 NC_000014.9 98.13 True local misassembly 11216866 11217991 17624748 17623623 NC_060945.1 NC_000014.9 97.96 True local misassembly 11213814 11216108 17627293 17624998 NC_060945.1 NC_000014.9 97.74 True local misassembly 11210073 11213542 17631539 17628074 NC_060945.1 NC_000014.9 98.21 True local misassembly 11201450 11209392 17639491 17631540 NC_060945.1 NC_000014.9 97.6 True local misassembly 11199077 11200769 17641185 17639492 NC_060945.1 NC_000014.9 98.58 True indel: indel (> 5bp) 11198389 11198905 17641702 17641186 NC_060945.1 NC_000014.9 97.49 True fake: not a misassembly (possible transposable element) 11241176 11242788 17644646 17643032 NC_060945.1 NC_000014.9 97.46 True fake: not a misassembly (possible transposable element) 11194319 11195276 17645605 17644647 NC_060945.1 NC_000014.9 98.02 True relocation, inconsistency = -46237 11237667 11240542 17648495 17645619 NC_060945.1 NC_000014.9 98.64 True indel: indel (> 5bp) 11235117 11237495 17650873 17648496 NC_060945.1 NC_000014.9 98.36 True indel: indel (> 5bp) 11223883 11234945 17661938 17650874 NC_060945.1 NC_000014.9 98.21 True local misassembly 11222707 11223882 17663797 17662620 NC_060945.1 NC_000014.9 97.79 True local misassembly 11220703 11222706 17667161 17665158 NC_060945.1 NC_000014.9 98.45 True local misassembly 11218736 11220022 17668448 17667162 NC_060945.1 NC_000014.9 98.68 True local misassembly 11204687 11218102 17682837 17669421 NC_060945.1 NC_000014.9 97.77 True indel: indel (> 5bp) 11199745 11204515 17687614 17682838 NC_060945.1 NC_000014.9 98.12 True relocation, inconsistency = -71893 11262924 11270633 17696328 17688619 NC_060945.1 NC_000014.9 98.08 True local misassembly 11248881 11261063 17709191 17697001 NC_060945.1 NC_000014.9 97.73 True relocation, inconsistency = 69013 11178055 11179867 17711001 17709192 NC_060945.1 NC_000014.9 97.75 True local misassembly 11176177 11177716 17712543 17711002 NC_060945.1 NC_000014.9 98.53 True relocation, inconsistency = 42476 11126568 11133700 17719671 17712544 NC_060945.1 NC_000014.9 97.55 True local misassembly 11122262 11126567 17724653 17720350 NC_060945.1 NC_000014.9 98.19 True indel: indel (> 5bp) 11120173 11122090 17726562 17724654 NC_060945.1 NC_000014.9 97.65 True local misassembly 11112402 11119287 17733818 17726938 NC_060945.1 NC_000014.9 98.55 True relocation, inconsistency = -45030 11154630 11156618 17736620 17734632 NC_060945.1 NC_000014.9 98.09 True local misassembly 11153253 11154629 17738676 17737301 NC_060945.1 NC_000014.9 97.39 True local misassembly 11150388 11153252 17741883 17739019 NC_060945.1 NC_000014.9 98.29 True local misassembly 11149739 11150387 17743553 17742903 NC_060945.1 NC_000014.9 98.62 True local misassembly 11147973 11149364 17745825 17744438 NC_060945.1 NC_000014.9 97.92 True local misassembly 11146137 11147972 17748005 17746169 NC_060945.1 NC_000014.9 98.26 True local misassembly 11140845 11146136 17754318 17749026 NC_060945.1 NC_000014.9 97.96 True local misassembly 11138757 11140506 17756068 17754319 NC_060945.1 NC_000014.9 97.94 True indel: indel (> 5bp) 11135020 11138585 17759640 17756069 NC_060945.1 NC_000014.9 97.56 True indel: indel (> 5bp) 11133817 11134849 17760673 17759641 NC_060945.1 NC_000014.9 97.77 True local misassembly 11131975 11133479 17762179 17760674 NC_060945.1 NC_000014.9 98.41 True local misassembly 11126468 11131974 17768538 17763031 NC_060945.1 NC_000014.9 97.66 True local misassembly 11120417 11125788 17773916 17768539 NC_060945.1 NC_000014.9 98.44 True local misassembly 11117404 11119225 17775737 17773917 NC_060945.1 NC_000014.9 97.37 True local misassembly 11108453 11117403 17785198 17776245 NC_060945.1 NC_000014.9 98.39 True local misassembly 11102378 11107773 17790598 17785199 NC_060945.1 NC_000014.9 98.11 True indel: indel (> 5bp) 11089368 11102206 17803444 17790599 NC_060945.1 NC_000014.9 98.44 True local misassembly 11076885 11089367 17816447 17803954 NC_060945.1 NC_000014.9 98.4 True local misassembly 11074347 11076033 17818138 17816448 NC_060945.1 NC_000014.9 98.64 True indel: indel (> 5bp) 11072465 11074175 17819848 17818139 NC_060945.1 NC_000014.9 98.54 True indel: indel (> 5bp) 11068726 11072294 17823419 17819849 NC_060945.1 NC_000014.9 98.66 True indel: indel (> 5bp) 11061327 11068555 17830655 17823420 NC_060945.1 NC_000014.9 98.24 True local misassembly 11058201 11060137 17832598 17830656 NC_060945.1 NC_000014.9 96.45 True indel: indel (> 5bp) 11057392 11058029 17833238 17832599 NC_060945.1 NC_000014.9 97.97 True local misassembly 11047581 11056878 17842535 17833239 NC_060945.1 NC_000014.9 97.58 True local misassembly 11044592 11047580 17846206 17843217 NC_060945.1 NC_000014.9 98.73 True indel: indel (> 5bp) 11042349 11044420 17848277 17846207 NC_060945.1 NC_000014.9 98.07 True local misassembly 11035084 11041669 17854858 17848278 NC_060945.1 NC_000014.9 98.22 True indel: indel (> 5bp) 11032012 11034912 17857759 17854859 NC_060945.1 NC_000014.9 97.86 True relocation, inconsistency = -74613 11096768 11106624 17867608 17857760 NC_060945.1 NC_000014.9 97.88 True relocation, inconsistency = 72579 11021994 11023679 17869805 17868118 NC_060945.1 NC_000014.9 98.16 True indel: indel (> 5bp) 11021145 11021822 17870483 17869806 NC_060945.1 NC_000014.9 96.17 True indel: indel (> 5bp) 11014514 11020970 17876939 17870484 NC_060945.1 NC_000014.9 97.79 True indel: indel (> 5bp) 11010761 11014342 17880525 17876940 NC_060945.1 NC_000014.9 97.96 True indel: indel (> 5bp) 11008904 11010589 17882212 17880526 NC_060945.1 NC_000014.9 96.92 True indel: indel (> 5bp) 11007034 11008732 17883913 17882213 NC_060945.1 NC_000014.9 98.0 True indel: indel (> 5bp) 11001424 11006862 17889347 17883914 NC_060945.1 NC_000014.9 96.97 True indel: indel (> 5bp) 10999554 11001252 17891040 17889348 NC_060945.1 NC_000014.9 97.12 True indel: indel (> 5bp) 10992074 10999382 17898348 17891041 NC_060945.1 NC_000014.9 98.14 True indel: indel (> 5bp) 10984594 10991902 17905658 17898349 NC_060945.1 NC_000014.9 98.32 True indel: indel (> 5bp) 10977794 10984422 17912271 17905659 NC_060945.1 NC_000014.9 97.75 True indel: indel (> 5bp) 10971504 10977622 17918388 17912272 NC_060945.1 NC_000014.9 98.07 True indel: indel (> 5bp) 10968448 10971332 17921277 17918389 NC_060945.1 NC_000014.9 98.17 True indel: indel (> 5bp) 10967768 10968276 17921786 17921278 NC_060945.1 NC_000014.9 98.04 True relocation, inconsistency = -73435 11038055 11041202 17924935 17921787 NC_060945.1 NC_000014.9 98.57 True local misassembly 11035764 11037374 17926545 17924936 NC_060945.1 NC_000014.9 98.01 True indel: indel (> 5bp) 11035086 11035592 17927053 17926546 NC_060945.1 NC_000014.9 99.02 True indel: indel (> 5bp) 11016840 11034913 17945126 17927054 NC_060945.1 NC_000014.9 98.01 True relocation, inconsistency = -83966 11077054 11100351 17968369 17945581 NC_060945.1 NC_000014.9 95.7 True relocation, inconsistency = -28043 11073497 11104940 17999813 17968526 NC_060945.1 NC_000014.9 97.57 True relocation, inconsistency = -57270 11119264 11130601 18011327 17999979 NC_060945.1 NC_000014.9 97.66 True local misassembly 11118012 11119263 18013091 18011837 NC_060945.1 NC_000014.9 98.65 True local misassembly 11093723 11117172 18037048 18013589 NC_060945.1 NC_000014.9 98.24 True indel: indel (> 5bp) 11078074 11093551 18052520 18037049 NC_060945.1 NC_000014.9 98.25 True indel: indel (> 5bp) 11075027 11077903 18055397 18052521 NC_060945.1 NC_000014.9 98.12 True indel: indel (> 5bp) 11073157 11074855 18057099 18055398 NC_060945.1 NC_000014.9 98.35 True indel: indel (> 5bp) 11071963 11072985 18058124 18057100 NC_060945.1 NC_000014.9 98.34 True indel: indel (> 5bp) 11063130 11071792 18066794 18058125 NC_060945.1 NC_000014.9 98.39 True indel: indel (> 5bp) 11056946 11062958 18072809 18066795 NC_060945.1 NC_000014.9 98.15 True local misassembly 11055819 11056432 18073413 18072810 NC_060945.1 NC_000014.9 95.44 True relocation, inconsistency = -230280 11270632 11286098 18088888 18073414 NC_060945.1 NC_000014.9 97.7 True indel: indel (> 5bp) 11254494 11270460 18104867 18088889 NC_060945.1 NC_000014.9 97.93 True indel: indel (> 5bp) 11253814 11254322 18105376 18104868 NC_060945.1 NC_000014.9 98.23 True indel: indel (> 5bp) 11248887 11253642 18110124 18105377 NC_060945.1 NC_000014.9 97.96 True indel: indel (> 5bp) 11247017 11248715 18111821 18110125 NC_060945.1 NC_000014.9 97.29 True indel: indel (> 5bp) 11239531 11246845 18119137 18111822 NC_060945.1 NC_000014.9 98.44 True indel: indel (> 5bp) 11236987 11239360 18121509 18119138 NC_060945.1 NC_000014.9 98.36 True indel: indel (> 5bp) 11235785 11236815 18122539 18121510 NC_060945.1 NC_000014.9 96.61 True indel: indel (> 5bp) 11223897 11235613 18134275 18122540 NC_060945.1 NC_000014.9 98.36 True indel: indel (> 5bp) 11222707 11223725 18135292 18134276 NC_060945.1 NC_000014.9 98.04 True indel: indel (> 5bp) 11222027 11222535 18135801 18135293 NC_060945.1 NC_000014.9 98.62 True relocation, inconsistency = 226213 10983392 10995813 18148217 18135802 NC_060945.1 NC_000014.9 98.41 True local misassembly 10978984 10982552 18152283 18148715 NC_060945.1 NC_000014.9 98.8 True indel: indel (> 5bp) 10977794 10978812 18153302 18152284 NC_060945.1 NC_000014.9 99.02 True indel: indel (> 5bp) 10975244 10977622 18155685 18153303 NC_060945.1 NC_000014.9 98.78 True indel: indel (> 5bp) 10970314 10975072 18160436 18155686 NC_060945.1 NC_000014.9 98.47 True indel: indel (> 5bp) 10967768 10970146 18162808 18160437 NC_060945.1 NC_000014.9 98.36 True indel: indel (> 5bp) 10964696 10967596 18165712 18162809 NC_060945.1 NC_000014.9 97.83 True relocation, inconsistency = -227230 11190115 11191925 18167526 18165713 NC_060945.1 NC_000014.9 98.25 True local misassembly 11186727 11190114 18171256 18167868 NC_060945.1 NC_000014.9 97.52 True local misassembly 11184802 11186726 18173523 18171599 NC_060945.1 NC_000014.9 97.66 True translocation, scaffold gap is present 12725764 13216023 18223524 18712644 NC_060938.1 NC_000014.9 99.7 True relocation, scaffold gap is present, inconsistency = 176893 13827452 13850784 18885915 18862645 NC_060938.1 NC_000014.9 98.6 True inversion 13198855 13823416 18885916 19511713 NC_060938.1 NC_000014.9 99.04 True translocation, scaffold gap is present 16157118 16204344 19659007 19611714 NC_060946.1 NC_000014.9 96.65 True translocation 13858819 16902190 19659008 22703923 NC_060938.1 NC_000014.9 99.43 True indel: indel (> 5bp) 16902283 28746612 22704171 34547856 NC_060938.1 NC_000014.9 99.61 True local misassembly 28751287 31489809 34555247 37300397 NC_060938.1 NC_000014.9 99.21 True local misassembly 31491082 43221127 37302023 49020564 NC_060938.1 NC_000014.9 99.66 True local misassembly 43221223 52891201 49023146 58684140 NC_060938.1 NC_000014.9 99.62 True indel: indel (> 5bp) 52891392 87687292 58684294 93459969 NC_060938.1 NC_000014.9 99.61 True indel: stretch of mismatches 87687370 99889247 93460047 105636714 NC_060938.1 NC_000014.9 99.38 True relocation, inconsistency = 19699 99909217 99965629 105636985 105693709 NC_060938.1 NC_000014.9 97.77 True local misassembly 99970087 100346568 105698318 106077024 NC_060938.1 NC_000014.9 98.75 True local misassembly 100384314 100413349 106112869 106141902 NC_060938.1 NC_000014.9 99.44 True indel: indel (> 5bp) 100413674 100502688 106142107 106231133 NC_060938.1 NC_000014.9 99.83 True indel: indel (> 5bp) 100502689 100510941 106231170 106239422 NC_060938.1 NC_000014.9 99.93 True indel: indel (> 5bp) 100510942 100626624 106239449 106355145 NC_060938.1 NC_000014.9 99.84 True relocation, inconsistency = 48955 100675580 100777723 106355146 106457300 NC_060938.1 NC_000014.9 99.82 True indel: indel (> 5bp) 100777747 100793881 106457301 106473433 NC_060938.1 NC_000014.9 99.91 True indel: indel (> 5bp) 100793960 100818836 106473434 106498307 NC_060938.1 NC_000014.9 99.87 True indel: indel (> 5bp) 100818837 100851385 106498358 106530919 NC_060938.1 NC_000014.9 99.53 True indel: indel (> 5bp) 100851446 101015420 106530920 106694902 NC_060938.1 NC_000014.9 99.73 True indel: indel (> 5bp) 101015421 101026843 106694944 106706367 NC_060938.1 NC_000014.9 99.98 True local misassembly 101029080 101037303 106706368 106714599 NC_060938.1 NC_000014.9 99.82 True relocation, inconsistency = -47410 101037304 101158993 106762010 106883718 NC_060938.1 NC_000014.9 99.95 True CONTIG NC_000014.9 107043718 misassembled 5594067 5796116 201709 1 NC_060938.1 NT_113796.3 99.82 True CONTIG NT_113796.3 201709 correct 6190871 6395403 1 200638 NC_060945.1 NT_167219.1 96.99 True relocation, inconsistency = 104564 6499968 6510499 200639 211173 NC_060945.1 NT_167219.1 99.8 True CONTIG NT_167219.1 211173 misassembled 4460377 4654444 194050 1 NC_060938.1 NT_187377.1 99.97 True CONTIG NT_187377.1 194050 correct 5747354 5938811 1 191469 NC_060946.1 NT_113888.1 99.96 True CONTIG NT_113888.1 191469 correct 9331470 9369518 1 38027 NC_060946.1 NT_187378.1 99.89 True CONTIG NT_187378.1 38115 correct 4334013 4336356 1 2343 NC_060938.1 NT_187379.1 96.59 True indel: indel (> 5bp) 4336389 4345011 2344 10961 NC_060938.1 NT_187379.1 97.4 True indel: indel (> 5bp) 4345012 4350889 10997 16865 NC_060938.1 NT_187379.1 96.58 True local misassembly 4352744 4359260 16866 23385 NC_060938.1 NT_187379.1 98.28 True translocation 9329278 9342667 36808 23394 NC_060946.1 NT_187379.1 98.66 True indel: indel (> 5bp) 9326558 9329277 39550 36830 NC_060946.1 NT_187379.1 98.53 True CONTIG NT_187379.1 39555 misassembled 8398644 8571649 172810 1 NC_060938.1 NT_187380.1 99.78 True CONTIG NT_187380.1 172810 correct 100726001 100731456 10235 4780 NC_060938.1 NT_187381.1 97.18 True relocation, inconsistency = -81043 100782700 100807043 34421 10236 NC_060938.1 NT_187381.1 97.36 True relocation, inconsistency = 32726 100745109 100749973 39287 34422 NC_060938.1 NT_187381.1 96.8 True local misassembly 100740287 100744727 43729 39288 NC_060938.1 NT_187381.1 96.6 True CONTIG NT_187381.1 43739 misassembled 15676638 15680271 17000034 17003668 NC_060939.1 NC_000015.10 99.61 True local misassembly 15682043 15687483 17003669 17009108 NC_060939.1 NC_000015.10 99.74 True local misassembly 15691569 15732591 17009490 17049133 NC_060939.1 NC_000015.10 96.55 True fake: scaffold gap size wrong estimation (local) 15732818 15767216 17049335 17083573 NC_060939.1 NC_000015.10 99.48 True relocation, scaffold gap is present, inconsistency = -309845 15458989 15460042 17085191 17086246 NC_060939.1 NC_000015.10 98.58 True indel: indel (> 5bp) 15460101 15460615 17086247 17086777 NC_060939.1 NC_000015.10 96.61 True local misassembly 15461428 15464351 17087596 17090510 NC_060939.1 NC_000015.10 96.07 True relocation, inconsistency = -39414 15424938 15427840 17090511 17093412 NC_060939.1 NC_000015.10 97.04 True indel: stretch of mismatches 15428148 15429205 17093720 17094777 NC_060939.1 NC_000015.10 96.31 True indel: indel (> 5bp) 15429377 15436707 17094778 17102109 NC_060939.1 NC_000015.10 96.93 True indel: indel (> 5bp) 15436879 15438039 17102110 17103270 NC_060939.1 NC_000015.10 96.3 True indel: indel (> 5bp) 15438097 15442126 17103271 17107283 NC_060939.1 NC_000015.10 97.82 True local misassembly 15442127 15451284 17108652 17117811 NC_060939.1 NC_000015.10 97.75 True indel: indel (> 5bp) 15451800 15455719 17118128 17122045 NC_060939.1 NC_000015.10 97.73 True indel: indel (> 5bp) 15455778 15456801 17122046 17123070 NC_060939.1 NC_000015.10 98.34 True local misassembly 15456802 15460058 17125462 17128721 NC_060939.1 NC_000015.10 99.23 True local misassembly 15460059 15464355 17132752 17137059 NC_060939.1 NC_000015.10 97.75 True indel: indel (> 5bp) 15464536 15482111 17137060 17154643 NC_060939.1 NC_000015.10 99.14 True indel: indel (> 5bp) 15482292 15490986 17154644 17163333 NC_060939.1 NC_000015.10 97.71 True indel: indel (> 5bp) 15491158 15495426 17163334 17167602 NC_060939.1 NC_000015.10 98.71 True indel: indel (> 5bp) 15495494 15499745 17167603 17171838 NC_060939.1 NC_000015.10 98.82 True indel: indel (> 5bp) 15499804 15504065 17171839 17176102 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 15504124 15508391 17176103 17180369 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 15508791 15512713 17180673 17184597 NC_060939.1 NC_000015.10 99.34 True indel: indel (> 5bp) 15512781 15517035 17184598 17188854 NC_060939.1 NC_000015.10 98.0 True indel: indel (> 5bp) 15517103 15521353 17188855 17193105 NC_060939.1 NC_000015.10 99.72 True relocation, inconsistency = -56831 15464523 15468790 17193106 17197371 NC_060939.1 NC_000015.10 96.6 True indel: indel (> 5bp) 15468962 15473233 17197372 17201623 NC_060939.1 NC_000015.10 95.88 True indel: indel (> 5bp) 15473414 15477668 17201624 17205859 NC_060939.1 NC_000015.10 95.93 True indel: indel (> 5bp) 15477840 15495426 17205860 17223427 NC_060939.1 NC_000015.10 98.91 True indel: indel (> 5bp) 15495494 15499749 17223428 17227684 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 15499817 15504069 17227685 17231938 NC_060939.1 NC_000015.10 99.55 True indel: indel (> 5bp) 15504137 15508391 17231939 17236176 NC_060939.1 NC_000015.10 99.2 True indel: indel (> 5bp) 15508459 15512713 17236177 17240417 NC_060939.1 NC_000015.10 99.22 True indel: indel (> 5bp) 15512781 15517035 17240418 17244672 NC_060939.1 NC_000015.10 99.65 True indel: indel (> 5bp) 15517103 15518223 17244673 17245793 NC_060939.1 NC_000015.10 99.91 True relocation, inconsistency = -8712 15518224 15521357 17254506 17257639 NC_060939.1 NC_000015.10 99.52 True indel: indel (> 5bp) 15521425 15525499 17257640 17261715 NC_060939.1 NC_000015.10 97.91 True local misassembly 15525500 15527218 17262912 17264631 NC_060939.1 NC_000015.10 99.65 True relocation, inconsistency = 42049 15569268 15573523 17264632 17268886 NC_060939.1 NC_000015.10 99.74 True indel: indel (> 5bp) 15573591 15577845 17268887 17273142 NC_060939.1 NC_000015.10 99.53 True indel: indel (> 5bp) 15577913 15582168 17273143 17277381 NC_060939.1 NC_000015.10 99.34 True indel: indel (> 5bp) 15582236 15586487 17277382 17281632 NC_060939.1 NC_000015.10 99.6 True indel: indel (> 5bp) 15586546 15590809 17281633 17285897 NC_060939.1 NC_000015.10 99.74 True indel: indel (> 5bp) 15590868 15595131 17285898 17290146 NC_060939.1 NC_000015.10 98.57 True indel: indel (> 5bp) 15595190 15599458 17290147 17294415 NC_060939.1 NC_000015.10 98.1 True indel: indel (> 5bp) 15599526 15603777 17294416 17298671 NC_060939.1 NC_000015.10 97.96 True indel: indel (> 5bp) 15603836 15608103 17298672 17302940 NC_060939.1 NC_000015.10 99.32 True indel: indel (> 5bp) 15608171 15612425 17302941 17307195 NC_060939.1 NC_000015.10 99.67 True indel: indel (> 5bp) 15612825 15616747 17307499 17311420 NC_060939.1 NC_000015.10 99.82 True indel: indel (> 5bp) 15616815 15621069 17311421 17315677 NC_060939.1 NC_000015.10 99.77 True indel: indel (> 5bp) 15621469 15625391 17315981 17319905 NC_060939.1 NC_000015.10 98.96 True indel: indel (> 5bp) 15625459 15629711 17319906 17324160 NC_060939.1 NC_000015.10 99.37 True indel: indel (> 5bp) 15629770 15634033 17324161 17328410 NC_060939.1 NC_000015.10 99.13 True indel: indel (> 5bp) 15634092 15637928 17328411 17332250 NC_060939.1 NC_000015.10 98.49 True relocation, inconsistency = -49083 15589604 15590809 17333009 17334214 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 15590868 15595145 17334215 17338494 NC_060939.1 NC_000015.10 99.18 True indel: indel (> 5bp) 15595146 15599458 17338611 17342921 NC_060939.1 NC_000015.10 98.79 True indel: indel (> 5bp) 15599526 15603781 17342922 17347178 NC_060939.1 NC_000015.10 99.11 True indel: indel (> 5bp) 15604181 15606116 17347482 17349419 NC_060939.1 NC_000015.10 99.48 True local misassembly 15606117 15607019 17353860 17354762 NC_060939.1 NC_000015.10 99.22 True local misassembly 15607020 15608099 17359203 17360282 NC_060939.1 NC_000015.10 99.26 True indel: indel (> 5bp) 15608158 15612435 17360283 17364548 NC_060939.1 NC_000015.10 97.27 True indel: indel (> 5bp) 15612436 15616757 17364665 17368986 NC_060939.1 NC_000015.10 99.19 True indel: indel (> 5bp) 15616758 15618334 17369103 17370676 NC_060939.1 NC_000015.10 96.58 True relocation, inconsistency = 34844 15661552 15664296 17379050 17381798 NC_060939.1 NC_000015.10 98.47 True indel: indel (> 5bp) 15664297 15667232 17381915 17384850 NC_060939.1 NC_000015.10 97.62 True indel: indel (> 5bp) 15667404 15668606 17384851 17386053 NC_060939.1 NC_000015.10 99.0 True indel: indel (> 5bp) 15668665 15672756 17386054 17390143 NC_060939.1 NC_000015.10 98.83 True local misassembly 15672987 15677261 17394760 17399038 NC_060939.1 NC_000015.10 98.6 True indel: indel (> 5bp) 15677262 15681568 17399155 17403460 NC_060939.1 NC_000015.10 98.56 True indel: indel (> 5bp) 15681627 15685889 17403461 17407725 NC_060939.1 NC_000015.10 99.46 True relocation, inconsistency = -47479 15638411 15642688 17407726 17412009 NC_060939.1 NC_000015.10 97.22 True indel: indel (> 5bp) 15642689 15645965 17412126 17415401 NC_060939.1 NC_000015.10 98.32 True local misassembly 15645966 15646995 17416607 17417637 NC_060939.1 NC_000015.10 99.61 True indel: indel (> 5bp) 15647054 15651319 17417638 17421908 NC_060939.1 NC_000015.10 98.34 True indel: indel (> 5bp) 15651378 15655638 17421909 17426173 NC_060939.1 NC_000015.10 98.29 True indel: indel (> 5bp) 15655697 15659960 17426174 17430421 NC_060939.1 NC_000015.10 98.31 True indel: indel (> 5bp) 15660019 15664284 17430422 17434689 NC_060939.1 NC_000015.10 99.18 True indel: indel (> 5bp) 15664343 15668606 17434690 17438959 NC_060939.1 NC_000015.10 98.15 True indel: indel (> 5bp) 15668665 15672928 17438960 17443220 NC_060939.1 NC_000015.10 97.3 True indel: indel (> 5bp) 15672987 15677251 17443221 17447484 NC_060939.1 NC_000015.10 96.6 True indel: indel (> 5bp) 15677319 15681572 17447485 17451724 NC_060939.1 NC_000015.10 98.0 True indel: indel (> 5bp) 15681640 15685889 17451725 17455975 NC_060939.1 NC_000015.10 99.11 True indel: indel (> 5bp) 15685948 15690414 17455976 17460447 NC_060939.1 NC_000015.10 97.74 True relocation, inconsistency = -117144 15573578 15575754 17460755 17462932 NC_060939.1 NC_000015.10 98.39 True local misassembly 15575755 15577841 17466175 17468261 NC_060939.1 NC_000015.10 99.66 True indel: indel (> 5bp) 15577900 15582164 17468262 17472512 NC_060939.1 NC_000015.10 98.17 True indel: indel (> 5bp) 15582223 15586487 17472513 17476781 NC_060939.1 NC_000015.10 98.85 True indel: indel (> 5bp) 15586546 15590809 17476782 17481032 NC_060939.1 NC_000015.10 97.47 True indel: indel (> 5bp) 15590868 15594707 17481033 17484873 NC_060939.1 NC_000015.10 98.91 True local misassembly 15595190 15596362 17486837 17488009 NC_060939.1 NC_000015.10 99.83 True local misassembly 15596363 15599454 17491076 17494167 NC_060939.1 NC_000015.10 98.45 True indel: indel (> 5bp) 15599513 15603777 17494168 17498435 NC_060939.1 NC_000015.10 97.35 True indel: indel (> 5bp) 15603836 15604351 17498436 17498951 NC_060939.1 NC_000015.10 98.64 True relocation, scaffold gap is present, inconsistency = 680949 16285401 16539059 17751900 17499052 NC_060939.1 NC_000015.10 98.98 True relocation, scaffold gap is present, inconsistency = -253517 16500269 16538552 17791578 17752266 NC_060939.1 NC_000015.10 97.15 True relocation, inconsistency = -55318 15999460 16555586 18355008 17791579 NC_060939.1 NC_000015.10 97.37 True relocation, scaffold gap is present, inconsistency = -1554272 17552703 17553631 18356037 18355109 NC_060939.1 NC_000015.10 96.23 True translocation 15714083 15714582 18356624 18356125 NC_060946.1 NC_000015.10 99.81 True translocation 17596915 17603940 18363648 18356625 NC_060939.1 NC_000015.10 97.68 True relocation, inconsistency = 446258 17145682 17150656 18368623 18363649 NC_060939.1 NC_000015.10 99.22 True local misassembly 17143429 17145001 18370193 18368624 NC_060939.1 NC_000015.10 99.36 True local misassembly 17137333 17142748 18375613 18370194 NC_060939.1 NC_000015.10 99.06 True local misassembly 17132840 17137332 18380778 18376289 NC_060939.1 NC_000015.10 98.55 True local misassembly 17128087 17132839 18386205 18381459 NC_060939.1 NC_000015.10 99.39 True local misassembly 17122396 17127406 18391213 18386206 NC_060939.1 NC_000015.10 99.42 True local misassembly 17114998 17122395 18399804 18392405 NC_060939.1 NC_000015.10 99.47 True local misassembly 17112745 17114317 18401379 18399805 NC_060939.1 NC_000015.10 99.3 True local misassembly 17107125 17112064 18406319 18401380 NC_060939.1 NC_000015.10 99.15 True local misassembly 17097099 17100221 18416174 18413052 NC_060939.1 NC_000015.10 99.58 True local misassembly 17091918 17096418 18420680 18416175 NC_060939.1 NC_000015.10 99.2 True local misassembly 17089011 17091917 18424269 18421363 NC_060939.1 NC_000015.10 99.42 True local misassembly 17086982 17089010 18427663 18425632 NC_060939.1 NC_000015.10 99.16 True local misassembly 17084107 17086301 18429857 18427664 NC_060939.1 NC_000015.10 99.41 True relocation, inconsistency = 106699 16968112 16971195 18439153 18436070 NC_060939.1 NC_000015.10 99.42 True local misassembly 16957156 16968111 18450793 18439834 NC_060939.1 NC_000015.10 99.47 True local misassembly 16952449 16957155 18456181 18451474 NC_060939.1 NC_000015.10 99.7 True local misassembly 16947810 16952448 18461330 18456693 NC_060939.1 NC_000015.10 99.66 True indel: indel (> 5bp) 16942292 16947638 18466680 18461331 NC_060939.1 NC_000015.10 99.42 True local misassembly 16937287 16942291 18472882 18467878 NC_060939.1 NC_000015.10 99.46 True local misassembly 16931586 16936606 18477907 18472883 NC_060939.1 NC_000015.10 99.36 True local misassembly 16926472 16930905 18482341 18477908 NC_060939.1 NC_000015.10 99.48 True local misassembly 16915766 16925791 18492367 18482342 NC_060939.1 NC_000015.10 99.48 True indel: indel (> 5bp) 16905808 16915594 18502157 18492368 NC_060939.1 NC_000015.10 99.41 True local misassembly 16902458 16903229 18502929 18502158 NC_060939.1 NC_000015.10 99.74 True local misassembly 16899542 16901777 18505165 18502930 NC_060939.1 NC_000015.10 98.84 True local misassembly 16890996 16898861 18513037 18505166 NC_060939.1 NC_000015.10 98.37 True local misassembly 16886294 16890995 18518253 18513551 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 16885284 16886123 18519093 18518254 NC_060939.1 NC_000015.10 98.57 True local misassembly 16882037 16885283 18523539 18520290 NC_060939.1 NC_000015.10 99.32 True local misassembly 16880123 16882036 18526133 18524220 NC_060939.1 NC_000015.10 99.58 True local misassembly 16877172 16880122 18529763 18526814 NC_060939.1 NC_000015.10 99.8 True local misassembly 16872291 16877171 18535326 18530444 NC_060939.1 NC_000015.10 99.47 True local misassembly 16869468 16871610 18537469 18535327 NC_060939.1 NC_000015.10 99.53 True local misassembly 16866018 16868787 18540239 18537470 NC_060939.1 NC_000015.10 99.57 True local misassembly 16864733 16866017 18542886 18541601 NC_060939.1 NC_000015.10 99.46 True indel: indel (> 5bp) 16861890 16864711 18545708 18542887 NC_060939.1 NC_000015.10 99.61 True local misassembly 16858771 16861038 18547976 18545709 NC_060939.1 NC_000015.10 99.21 True local misassembly 16851377 16858770 18556050 18548657 NC_060939.1 NC_000015.10 99.59 True local misassembly 16848462 16850697 18558273 18556051 NC_060939.1 NC_000015.10 97.81 True local misassembly 16839864 16847229 18566021 18558655 NC_060939.1 NC_000015.10 99.57 True indel: indel (> 5bp) 16838586 16839367 18567149 18566368 NC_060939.1 NC_000015.10 96.29 True local misassembly 16835793 16838247 18569604 18567150 NC_060939.1 NC_000015.10 99.67 True indel: indel (> 5bp) 16834961 16835792 18570457 18569626 NC_060939.1 NC_000015.10 99.76 True local misassembly 16827359 16834280 18577379 18570458 NC_060939.1 NC_000015.10 99.55 True local misassembly 16825825 16827358 18579422 18577889 NC_060939.1 NC_000015.10 99.15 True local misassembly 16820464 16824230 18584095 18580329 NC_060939.1 NC_000015.10 99.63 True indel: indel (> 5bp) 16819165 16820442 18585373 18584096 NC_060939.1 NC_000015.10 98.83 True indel: indel (> 5bp) 16815067 16818993 18589302 18585374 NC_060939.1 NC_000015.10 99.54 True local misassembly 16812150 16814386 18591541 18589303 NC_060939.1 NC_000015.10 99.69 True local misassembly 16806724 16811469 18596290 18591542 NC_060939.1 NC_000015.10 99.03 True relocation, inconsistency = -672244 17476849 17478967 18598409 18596291 NC_060939.1 NC_000015.10 99.73 True local misassembly 17466495 17476168 18608086 18598410 NC_060939.1 NC_000015.10 99.49 True local misassembly 17464144 17465814 18609761 18608087 NC_060939.1 NC_000015.10 99.1 True relocation, inconsistency = 669848 16789106 16794295 18614953 18609762 NC_060939.1 NC_000015.10 99.08 True indel: indel (> 5bp) 16786570 16789105 18617510 18614975 NC_060939.1 NC_000015.10 99.8 True relocation, inconsistency = -670832 17451157 17457401 18623756 18617511 NC_060939.1 NC_000015.10 99.02 True local misassembly 17445667 17450476 18628567 18623757 NC_060939.1 NC_000015.10 99.33 True local misassembly 17435950 17445666 18638971 18629248 NC_060939.1 NC_000015.10 99.38 True local misassembly 17433262 17435269 18640983 18638972 NC_060939.1 NC_000015.10 98.86 True local misassembly 17428155 17432581 18645411 18640984 NC_060939.1 NC_000015.10 99.35 True local misassembly 17426609 17427470 18646273 18645412 NC_060939.1 NC_000015.10 99.65 True local misassembly 17425546 17426608 18648017 18646955 NC_060939.1 NC_000015.10 99.25 True relocation, inconsistency = 666055 16750944 16759490 18656565 18648018 NC_060939.1 NC_000015.10 99.09 True relocation, inconsistency = -667748 17404064 17418691 18671197 18656566 NC_060939.1 NC_000015.10 99.38 True local misassembly 17401053 17403383 18673533 18671198 NC_060939.1 NC_000015.10 98.07 True local misassembly 17396699 17400826 18678564 18674436 NC_060939.1 NC_000015.10 99.2 True local misassembly 17395538 17396698 18681085 18679925 NC_060939.1 NC_000015.10 99.4 True indel: indel (> 5bp) 17393879 17395537 18682768 18681107 NC_060939.1 NC_000015.10 99.04 True local misassembly 17389477 17392350 18685979 18683104 NC_060939.1 NC_000015.10 99.06 True local misassembly 17385047 17387987 18689895 18686955 NC_060939.1 NC_000015.10 99.39 True local misassembly 17382607 17385046 18692677 18690238 NC_060939.1 NC_000015.10 99.55 True indel: indel (> 5bp) 17381611 17382606 18693694 18692699 NC_060939.1 NC_000015.10 99.8 True local misassembly 17377405 17380930 18697220 18693695 NC_060939.1 NC_000015.10 99.12 True local misassembly 17374611 17377404 18701892 18699098 NC_060939.1 NC_000015.10 98.89 True indel: indel (> 5bp) 17373080 17374439 18703252 18701893 NC_060939.1 NC_000015.10 97.72 True local misassembly 17371074 17373079 18706990 18704980 NC_060939.1 NC_000015.10 95.13 True local misassembly 17368329 17370768 18710590 18708151 NC_060939.1 NC_000015.10 99.8 True indel: indel (> 5bp) 17362615 17368328 18716328 18710612 NC_060939.1 NC_000015.10 99.25 True local misassembly 17361359 17362614 18719459 18718204 NC_060939.1 NC_000015.10 99.52 True indel: indel (> 5bp) 17354912 17361358 18725929 18719481 NC_060939.1 NC_000015.10 99.4 True local misassembly 17351507 17353735 18728160 18725930 NC_060939.1 NC_000015.10 99.6 True local misassembly 17349976 17350826 18729012 18728161 NC_060939.1 NC_000015.10 99.53 True indel: indel (> 5bp) 17345563 17349975 18733450 18729034 NC_060939.1 NC_000015.10 99.57 True indel: indel (> 5bp) 17341149 17345562 18737885 18733472 NC_060939.1 NC_000015.10 99.43 True indel: indel (> 5bp) 17335867 17341127 18743146 18737886 NC_060939.1 NC_000015.10 99.49 True local misassembly 17332436 17335866 18747937 18744507 NC_060939.1 NC_000015.10 99.27 True local misassembly 17329724 17332435 18751838 18749131 NC_060939.1 NC_000015.10 96.5 True local misassembly 17321475 17329231 18759596 18751839 NC_060939.1 NC_000015.10 99.25 True local misassembly 17320877 17321474 18760874 18760277 NC_060939.1 NC_000015.10 99.67 True indel: indel (> 5bp) 17319246 17320876 18762526 18760896 NC_060939.1 NC_000015.10 99.57 True local misassembly 17316704 17319245 18765410 18762869 NC_060939.1 NC_000015.10 99.02 True local misassembly 17313809 17316365 18767967 18765411 NC_060939.1 NC_000015.10 99.14 True local misassembly 17311016 17313470 18770421 18767968 NC_060939.1 NC_000015.10 99.43 True indel: indel (> 5bp) 17305195 17311015 18776264 18770443 NC_060939.1 NC_000015.10 99.23 True local misassembly 17302586 17304514 18778194 18776265 NC_060939.1 NC_000015.10 99.38 True local misassembly 17301489 17302585 18779976 18778880 NC_060939.1 NC_000015.10 99.64 True indel: indel (> 5bp) 17300163 17301488 18781324 18779998 NC_060939.1 NC_000015.10 97.97 True local misassembly 17299178 17300162 18782821 18781837 NC_060939.1 NC_000015.10 99.19 True local misassembly 17297767 17299177 18784574 18783164 NC_060939.1 NC_000015.10 99.79 True local misassembly 17296738 17297766 18786283 18785255 NC_060939.1 NC_000015.10 99.42 True indel: indel (> 5bp) 17295405 17296737 18787643 18786305 NC_060939.1 NC_000015.10 98.21 True local misassembly 17292325 17294207 18789527 18787644 NC_060939.1 NC_000015.10 99.36 True indel: indel (> 5bp) 17286859 17292324 18795017 18789549 NC_060939.1 NC_000015.10 99.52 True local misassembly 17285223 17286858 18797334 18795697 NC_060939.1 NC_000015.10 99.57 True local misassembly 17282929 17285222 18800310 18798016 NC_060939.1 NC_000015.10 98.87 True local misassembly 17280687 17282928 18805443 18803201 NC_060939.1 NC_000015.10 98.75 True indel: indel (> 5bp) 17279065 17280516 18806896 18805444 NC_060939.1 NC_000015.10 99.59 True indel: indel (> 5bp) 17278238 17279064 18807744 18806918 NC_060939.1 NC_000015.10 99.64 True local misassembly 17274937 17278237 18811725 18808425 NC_060939.1 NC_000015.10 99.49 True local misassembly 17273286 17274936 18814735 18813086 NC_060939.1 NC_000015.10 99.82 True local misassembly 17272095 17272880 18819162 18818377 NC_060939.1 NC_000015.10 99.75 True indel: indel (> 5bp) 17269289 17272094 18821989 18819184 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 17268111 17269117 18822996 18821990 NC_060939.1 NC_000015.10 99.7 True local misassembly 17263269 17266254 18825982 18822997 NC_060939.1 NC_000015.10 99.43 True indel: indel (> 5bp) 17262442 17263268 18826830 18826004 NC_060939.1 NC_000015.10 99.52 True local misassembly 17254268 17262441 18835681 18827511 NC_060939.1 NC_000015.10 98.61 True local misassembly 17247431 17253754 18842006 18835682 NC_060939.1 NC_000015.10 99.18 True indel: indel (> 5bp) 17244423 17247430 18845037 18842028 NC_060939.1 NC_000015.10 99.67 True local misassembly 17239526 17243742 18849258 18845038 NC_060939.1 NC_000015.10 99.03 True local misassembly 17237306 17237930 18850131 18849507 NC_060939.1 NC_000015.10 98.56 True local misassembly 17234411 17236967 18852688 18850132 NC_060939.1 NC_000015.10 98.94 True local misassembly 17231872 17234072 18854889 18852689 NC_060939.1 NC_000015.10 99.18 True local misassembly 17229168 17231200 18857254 18855221 NC_060939.1 NC_000015.10 99.51 True local misassembly 17220345 17229167 18866759 18857935 NC_060939.1 NC_000015.10 99.21 True local misassembly 17217238 17218098 18867840 18866980 NC_060939.1 NC_000015.10 98.14 True local misassembly 17215976 17216899 18868764 18867841 NC_060939.1 NC_000015.10 99.78 True indel: indel (> 5bp) 17214445 17215804 18870124 18868765 NC_060939.1 NC_000015.10 98.38 True indel: indel (> 5bp) 17210032 17214444 18874559 18870146 NC_060939.1 NC_000015.10 99.57 True indel: indel (> 5bp) 17209205 17210031 18875405 18874581 NC_060939.1 NC_000015.10 99.4 True local misassembly 17203585 17209204 18881705 18876086 NC_060939.1 NC_000015.10 99.54 True local misassembly 17191815 17202408 18892303 18881706 NC_060939.1 NC_000015.10 99.27 True local misassembly 17189276 17191136 18894166 18892304 NC_060939.1 NC_000015.10 98.87 True local misassembly 17186593 17188595 18896169 18894167 NC_060939.1 NC_000015.10 99.45 True local misassembly 17178923 17185912 18903160 18896170 NC_060939.1 NC_000015.10 99.37 True local misassembly 17177518 17178242 18903885 18903161 NC_060939.1 NC_000015.10 99.03 True indel: indel (> 5bp) 17176169 17177496 18905213 18903886 NC_060939.1 NC_000015.10 98.42 True local misassembly 17171025 17176168 18911553 18906411 NC_060939.1 NC_000015.10 99.16 True local misassembly 17166510 17170806 18917255 18912957 NC_060939.1 NC_000015.10 99.37 True local misassembly 17155910 17165828 18927175 18917256 NC_060939.1 NC_000015.10 99.55 True local misassembly 17152848 17155229 18929557 18927176 NC_060939.1 NC_000015.10 99.62 True local misassembly 17150446 17152847 18932639 18930238 NC_060939.1 NC_000015.10 99.71 True local misassembly 17147808 17149765 18934597 18932640 NC_060939.1 NC_000015.10 99.64 True local misassembly 17145899 17147807 18937188 18935278 NC_060939.1 NC_000015.10 99.22 True local misassembly 17144277 17145898 18939491 18937870 NC_060939.1 NC_000015.10 99.69 True indel: indel (> 5bp) 17143251 17144255 18940496 18939492 NC_060939.1 NC_000015.10 99.7 True local misassembly 17140872 17142570 18942195 18940497 NC_060939.1 NC_000015.10 99.94 True local misassembly 17137702 17140191 18944687 18942196 NC_060939.1 NC_000015.10 99.56 True local misassembly 17127783 17136338 18953246 18944688 NC_060939.1 NC_000015.10 99.44 True local misassembly 17122871 17127102 18957477 18953247 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 17120459 17122699 18959718 18957478 NC_060939.1 NC_000015.10 99.78 True local misassembly 17117329 17120458 18963358 18960228 NC_060939.1 NC_000015.10 99.52 True local misassembly 17115215 17117328 18966152 18964041 NC_060939.1 NC_000015.10 99.1 True indel: indel (> 5bp) 17114116 17115044 18967081 18966153 NC_060939.1 NC_000015.10 98.17 True local misassembly 17110086 17112300 18971113 18968899 NC_060939.1 NC_000015.10 99.41 True local misassembly 17100383 17108549 18979453 18971286 NC_060939.1 NC_000015.10 99.05 True fake: scaffold gap size wrong estimation (local) 17095679 17099464 18983799 18980014 NC_060939.1 NC_000015.10 99.76 True local misassembly 17094570 17095678 18985592 18984484 NC_060939.1 NC_000015.10 100.0 True local misassembly 17090580 17094569 18990263 18986273 NC_060939.1 NC_000015.10 99.42 True indel: indel (> 5bp) 17086669 17090558 18994153 18990264 NC_060939.1 NC_000015.10 99.54 True local misassembly 17084314 17086668 18997702 18995351 NC_060939.1 NC_000015.10 99.15 True local misassembly 17080184 17083633 19001153 18997703 NC_060939.1 NC_000015.10 99.16 True local misassembly 17075918 17079503 19004741 19001154 NC_060939.1 NC_000015.10 99.47 True indel: indel (> 5bp) 17072517 17075896 19008127 19004742 NC_060939.1 NC_000015.10 99.5 True local misassembly 17069514 17071836 19010457 19008128 NC_060939.1 NC_000015.10 99.53 True local misassembly 17068980 17069513 19011672 19011139 NC_060939.1 NC_000015.10 100.0 True local misassembly 17067407 17068979 19013925 19012353 NC_060939.1 NC_000015.10 99.75 True local misassembly 17063668 17066726 19016990 19013926 NC_060939.1 NC_000015.10 98.86 True local misassembly 17059740 17061887 19021602 19019455 NC_060939.1 NC_000015.10 99.67 True local misassembly 17057081 17059059 19023581 19021603 NC_060939.1 NC_000015.10 99.55 True local misassembly 17046777 17057080 19034395 19024092 NC_060939.1 NC_000015.10 99.25 True local misassembly 17044296 17046096 19036197 19034396 NC_060939.1 NC_000015.10 99.72 True indel: indel (> 5bp) 17041537 17044124 19038785 19036198 NC_060939.1 NC_000015.10 99.54 True local misassembly 17036423 17040856 19043216 19038786 NC_060939.1 NC_000015.10 99.44 True local misassembly 17034068 17035742 19044889 19043217 NC_060939.1 NC_000015.10 97.55 True indel: indel (> 5bp) 17031613 17033896 19047174 19044890 NC_060939.1 NC_000015.10 99.34 True local misassembly 17026195 17030932 19051912 19047175 NC_060939.1 NC_000015.10 99.49 True local misassembly 17021283 17025514 19056145 19051913 NC_060939.1 NC_000015.10 99.57 True indel: indel (> 5bp) 17020581 17021111 19056676 19056146 NC_060939.1 NC_000015.10 98.49 True local misassembly 17016575 17020238 19060341 19056677 NC_060939.1 NC_000015.10 99.45 True local misassembly 17013068 17016231 19063504 19060342 NC_060939.1 NC_000015.10 99.56 True relocation, inconsistency = -512390 17518320 17525457 19070642 19063505 NC_060939.1 NC_000015.10 99.3 True indel: indel (> 5bp) 17514066 17518148 19074729 19070643 NC_060939.1 NC_000015.10 99.0 True indel: indel (> 5bp) 17512213 17513894 19076411 19074730 NC_060939.1 NC_000015.10 99.11 True relocation, inconsistency = 330678 17179286 17181387 19078659 19076559 NC_060939.1 NC_000015.10 99.33 True local misassembly 17160822 17178604 19096450 19078660 NC_060939.1 NC_000015.10 99.32 True local misassembly 17151100 17160821 19107367 19097648 NC_060939.1 NC_000015.10 99.52 True local misassembly 17146834 17150419 19110952 19107368 NC_060939.1 NC_000015.10 99.67 True indel: indel (> 5bp) 17142834 17146812 19114931 19110953 NC_060939.1 NC_000015.10 99.6 True relocation, inconsistency = -331550 17469356 17473874 19119958 19115441 NC_060939.1 NC_000015.10 99.16 True local misassembly 17466495 17468675 19122139 19119959 NC_060939.1 NC_000015.10 99.4 True local misassembly 17461560 17465814 19126397 19122140 NC_060939.1 NC_000015.10 99.34 True local misassembly 17458828 17460879 19128451 19126398 NC_060939.1 NC_000015.10 99.17 True local misassembly 17456473 17458147 19130125 19128452 NC_060939.1 NC_000015.10 98.87 True indel: indel (> 5bp) 17448775 17456301 19137652 19130126 NC_060939.1 NC_000015.10 99.03 True local misassembly 17443585 17448094 19142162 19137653 NC_060939.1 NC_000015.10 99.31 True local misassembly 17433630 17442904 19151441 19142163 NC_060939.1 NC_000015.10 99.32 True local misassembly 17430503 17432949 19153890 19151442 NC_060939.1 NC_000015.10 98.94 True local misassembly 17427946 17430502 19157644 19155088 NC_060939.1 NC_000015.10 99.41 True local misassembly 17421936 17426748 19162458 19157645 NC_060939.1 NC_000015.10 99.21 True local misassembly 17411609 17421255 19172107 19162459 NC_060939.1 NC_000015.10 99.2 True local misassembly 17405815 17410928 19177220 19172108 NC_060939.1 NC_000015.10 99.22 True relocation, inconsistency = 508830 16894843 16896430 19179363 19177775 NC_060939.1 NC_000015.10 99.56 True local misassembly 16892234 16894163 19181294 19179364 NC_060939.1 NC_000015.10 99.59 True local misassembly 16887229 16891552 19185620 19181295 NC_060939.1 NC_000015.10 99.28 True indel: indel (> 5bp) 16886294 16887207 19186534 19185621 NC_060939.1 NC_000015.10 99.67 True local misassembly 16883646 16885614 19188503 19186535 NC_060939.1 NC_000015.10 99.29 True indel: indel (> 5bp) 16881340 16883474 19190638 19188504 NC_060939.1 NC_000015.10 98.59 True relocation, inconsistency = -511909 17392344 17393248 19191543 19190639 NC_060939.1 NC_000015.10 99.68 True local misassembly 17390657 17392001 19192887 19191544 NC_060939.1 NC_000015.10 97.48 True relocation, inconsistency = 511054 16877605 16879602 19194885 19192888 NC_060939.1 NC_000015.10 99.5 True relocation, inconsistency = -182899 17054322 17060010 19201072 19195379 NC_060939.1 NC_000015.10 99.21 True local misassembly 17041037 17053641 19213682 19201073 NC_060939.1 NC_000015.10 99.45 True local misassembly 17038604 17040694 19215774 19213683 NC_060939.1 NC_000015.10 99.71 True local misassembly 17032707 17038603 19222353 19216456 NC_060939.1 NC_000015.10 99.3 True relocation, inconsistency = -328577 17358358 17361283 19225278 19222354 NC_060939.1 NC_000015.10 99.56 True local misassembly 17349976 17356993 19232298 19225279 NC_060939.1 NC_000015.10 99.6 True indel: indel (> 5bp) 17347576 17349975 19234723 19232320 NC_060939.1 NC_000015.10 99.67 True relocation, inconsistency = 329124 17017705 17018321 19235470 19234854 NC_060939.1 NC_000015.10 97.57 True local misassembly 17016575 17017704 19237109 19235980 NC_060939.1 NC_000015.10 97.79 True relocation, inconsistency = -331001 17345563 17347575 19239121 19237110 NC_060939.1 NC_000015.10 99.35 True indel: indel (> 5bp) 17339272 17345562 19245433 19239143 NC_060939.1 NC_000015.10 99.4 True indel: indel (> 5bp) 17338127 17339250 19246558 19245434 NC_060939.1 NC_000015.10 99.56 True local misassembly 17336048 17336762 19247273 19246559 NC_060939.1 NC_000015.10 99.25 True relocation, inconsistency = 330508 16991381 17005539 19261432 19247274 NC_060939.1 NC_000015.10 99.13 True local misassembly 16985081 16990700 19267054 19261433 NC_060939.1 NC_000015.10 99.38 True local misassembly 16977410 16983883 19273533 19267055 NC_060939.1 NC_000015.10 99.27 True local misassembly 16973395 16976212 19276353 19273534 NC_060939.1 NC_000015.10 99.22 True indel: indel (> 5bp) 16971773 16973224 19277805 19276354 NC_060939.1 NC_000015.10 99.38 True indel: indel (> 5bp) 16970621 16971751 19278936 19277806 NC_060939.1 NC_000015.10 99.82 True local misassembly 16963254 16969940 19285624 19278937 NC_060939.1 NC_000015.10 99.61 True local misassembly 16958038 16962573 19290161 19285625 NC_060939.1 NC_000015.10 99.49 True indel: indel (> 5bp) 16956431 16957866 19291597 19290162 NC_060939.1 NC_000015.10 99.37 True indel: indel (> 5bp) 16955583 16956409 19292424 19291598 NC_060939.1 NC_000015.10 99.64 True local misassembly 16952722 16954902 19294606 19292425 NC_060939.1 NC_000015.10 99.31 True local misassembly 16951317 16952041 19295331 19294607 NC_060939.1 NC_000015.10 99.31 True indel: indel (> 5bp) 16945150 16951295 19301479 19295332 NC_060939.1 NC_000015.10 99.66 True local misassembly 16943646 16944469 19302304 19301480 NC_060939.1 NC_000015.10 99.39 True indel: indel (> 5bp) 16942671 16943624 19303258 19302305 NC_060939.1 NC_000015.10 99.69 True local misassembly 16940063 16941992 19305186 19303259 NC_060939.1 NC_000015.10 99.74 True local misassembly 16937004 16939382 19307566 19305187 NC_060939.1 NC_000015.10 99.33 True local misassembly 16934143 16937003 19310933 19308077 NC_060939.1 NC_000015.10 99.37 True local misassembly 16928882 16933462 19315514 19310934 NC_060939.1 NC_000015.10 99.59 True local misassembly 16924219 16928201 19319500 19315515 NC_060939.1 NC_000015.10 99.55 True local misassembly 16919105 16923538 19323934 19319501 NC_060939.1 NC_000015.10 99.57 True local misassembly 16916446 16918424 19325913 19323935 NC_060939.1 NC_000015.10 99.49 True indel: indel (> 5bp) 16914159 16916274 19328029 19325914 NC_060939.1 NC_000015.10 99.43 True indel: indel (> 5bp) 16910450 16914137 19331713 19328030 NC_060939.1 NC_000015.10 99.4 True local misassembly 16908197 16909769 19333287 19331714 NC_060939.1 NC_000015.10 99.49 True local misassembly 16905522 16908196 19336638 19333968 NC_060939.1 NC_000015.10 99.36 True local misassembly 16899653 16904670 19341656 19336639 NC_060939.1 NC_000015.10 99.44 True local misassembly 16897307 16898972 19343322 19341657 NC_060939.1 NC_000015.10 99.52 True local misassembly 16894913 16896627 19345037 19343323 NC_060939.1 NC_000015.10 99.25 True relocation, inconsistency = -336555 17228723 17231467 19347780 19345038 NC_060939.1 NC_000015.10 97.52 True indel: indel (> 5bp) 17227592 17228722 19348932 19347802 NC_060939.1 NC_000015.10 98.85 True local misassembly 17225210 17226911 19350634 19348933 NC_060939.1 NC_000015.10 99.47 True local misassembly 17222902 17224529 19352263 19350635 NC_060939.1 NC_000015.10 99.32 True local misassembly 17220399 17222221 19354087 19352264 NC_060939.1 NC_000015.10 99.57 True relocation, inconsistency = 334524 16882840 16885874 19357126 19354088 NC_060939.1 NC_000015.10 99.21 True local misassembly 16880642 16882159 19358647 19357127 NC_060939.1 NC_000015.10 98.69 True local misassembly 16877633 16879961 19360976 19358648 NC_060939.1 NC_000015.10 99.7 True local misassembly 16872134 16876952 19365799 19360977 NC_060939.1 NC_000015.10 99.42 True indel: indel (> 5bp) 16864733 16871962 19373031 19365800 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 16864035 16864711 19373708 19373032 NC_060939.1 NC_000015.10 99.41 True local misassembly 16861226 16863354 19375837 19373709 NC_060939.1 NC_000015.10 99.2 True local misassembly 16857742 16858873 19377274 19376143 NC_060939.1 NC_000015.10 99.91 True indel: indel (> 5bp) 16856464 16857741 19378573 19377296 NC_060939.1 NC_000015.10 99.06 True local misassembly 16851121 16855783 19383236 19378574 NC_060939.1 NC_000015.10 99.46 True relocation, inconsistency = -344123 17181480 17195243 19397007 19383237 NC_060939.1 NC_000015.10 98.95 True local misassembly 17179125 17180799 19398682 19397008 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 17171454 17178953 19406190 19398683 NC_060939.1 NC_000015.10 99.0 True indel: indel (> 5bp) 17168922 17171282 19408552 19406191 NC_060939.1 NC_000015.10 99.32 True local misassembly 17166138 17168492 19414410 19412056 NC_060939.1 NC_000015.10 99.49 True local misassembly 17160822 17165457 19419044 19414411 NC_060939.1 NC_000015.10 99.42 True local misassembly 17158467 17160821 19422596 19420242 NC_060939.1 NC_000015.10 98.6 True local misassembly 17156312 17157786 19424072 19422597 NC_060939.1 NC_000015.10 99.53 True local misassembly 17153657 17156311 19427408 19424750 NC_060939.1 NC_000015.10 98.91 True local misassembly 17150296 17152976 19430089 19427409 NC_060939.1 NC_000015.10 99.52 True local misassembly 17145884 17149953 19434159 19430090 NC_060939.1 NC_000015.10 99.24 True indel: indel (> 5bp) 17144865 17145712 19435010 19434160 NC_060939.1 NC_000015.10 99.53 True local misassembly 17143251 17144864 19437818 19436205 NC_060939.1 NC_000015.10 99.5 True local misassembly 17138213 17142570 19442181 19437819 NC_060939.1 NC_000015.10 99.29 True indel: indel (> 5bp) 17135758 17138041 19444465 19442182 NC_060939.1 NC_000015.10 99.43 True local misassembly 17132695 17135077 19446849 19444466 NC_060939.1 NC_000015.10 99.12 True local misassembly 17130542 17132694 19450199 19448047 NC_060939.1 NC_000015.10 99.49 True indel: indel (> 5bp) 17127985 17130370 19452585 19450200 NC_060939.1 NC_000015.10 99.33 True local misassembly 17125428 17127984 19455651 19453095 NC_060939.1 NC_000015.10 99.73 True indel: indel (> 5bp) 17117859 17125256 19463047 19455652 NC_060939.1 NC_000015.10 99.38 True local misassembly 17115302 17117178 19464924 19463048 NC_060939.1 NC_000015.10 99.63 True local misassembly 17112551 17114621 19466996 19464925 NC_060939.1 NC_000015.10 99.61 True local misassembly 17110188 17112550 19470039 19467677 NC_060939.1 NC_000015.10 99.32 True local misassembly 17107631 17109507 19471915 19470040 NC_060939.1 NC_000015.10 99.57 True local misassembly 17104881 17106950 19473987 19471916 NC_060939.1 NC_000015.10 99.32 True local misassembly 17099960 17104200 19478225 19473988 NC_060939.1 NC_000015.10 99.55 True local misassembly 17097301 17099279 19480205 19478226 NC_060939.1 NC_000015.10 99.29 True indel: indel (> 5bp) 17092791 17097129 19484547 19480206 NC_060939.1 NC_000015.10 99.15 True indel: indel (> 5bp) 17089732 17092619 19487433 19484548 NC_060939.1 NC_000015.10 98.86 True local misassembly 17087073 17089051 19489412 19487434 NC_060939.1 NC_000015.10 99.24 True indel: indel (> 5bp) 17084618 17086901 19491698 19489413 NC_060939.1 NC_000015.10 99.74 True local misassembly 17081883 17083937 19493753 19491699 NC_060939.1 NC_000015.10 99.37 True local misassembly 17079733 17081882 19496585 19494434 NC_060939.1 NC_000015.10 99.58 True local misassembly 17077627 17079052 19498011 19496586 NC_060939.1 NC_000015.10 99.51 True local misassembly 17074869 17076946 19500095 19498012 NC_060939.1 NC_000015.10 99.04 True local misassembly 17069660 17074188 19504629 19500096 NC_060939.1 NC_000015.10 99.58 True local misassembly 17064676 17068979 19508938 19504630 NC_060939.1 NC_000015.10 99.37 True local misassembly 17062297 17063995 19510637 19508939 NC_060939.1 NC_000015.10 99.59 True local misassembly 17059436 17061616 19512819 19510638 NC_060939.1 NC_000015.10 99.36 True local misassembly 17054524 17058755 19517051 19512820 NC_060939.1 NC_000015.10 99.5 True local misassembly 17046777 17054523 19525312 19517561 NC_060939.1 NC_000015.10 99.34 True local misassembly 17043892 17046096 19527517 19525313 NC_060939.1 NC_000015.10 99.32 True local misassembly 17039079 17043891 19533533 19528716 NC_060939.1 NC_000015.10 99.56 True local misassembly 17036625 17038398 19535307 19533534 NC_060939.1 NC_000015.10 99.55 True indel: indel (> 5bp) 17034068 17036453 19537694 19535308 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 17031511 17033896 19540081 19537695 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 17029904 17031339 19541517 19540082 NC_060939.1 NC_000015.10 99.23 True indel: indel (> 5bp) 17028954 17029882 19542446 19541518 NC_060939.1 NC_000015.10 99.68 True indel: indel (> 5bp) 17024444 17028782 19546785 19542447 NC_060939.1 NC_000015.10 99.45 True local misassembly 17021283 17023592 19549095 19546786 NC_060939.1 NC_000015.10 99.44 True indel: indel (> 5bp) 17018726 17021111 19551481 19549096 NC_060939.1 NC_000015.10 99.25 True indel: indel (> 5bp) 17016545 17018554 19553494 19551482 NC_060939.1 NC_000015.10 99.55 True local misassembly 17013270 17015655 19556257 19553871 NC_060939.1 NC_000015.10 99.33 True indel: indel (> 5bp) 17008495 17013098 19560862 19556258 NC_060939.1 NC_000015.10 99.41 True local misassembly 17001503 17003666 19569716 19567552 NC_060939.1 NC_000015.10 99.26 True indel: indel (> 5bp) 16998008 17001331 19573045 19569717 NC_060939.1 NC_000015.10 97.18 True local misassembly 16996389 16998007 19575686 19574068 NC_060939.1 NC_000015.10 99.14 True indel: indel (> 5bp) 16993836 16996217 19578072 19575687 NC_060939.1 NC_000015.10 99.2 True indel: indel (> 5bp) 16991381 16993664 19580356 19578073 NC_060939.1 NC_000015.10 99.65 True local misassembly 16986165 16990700 19584892 19580357 NC_060939.1 NC_000015.10 99.45 True indel: indel (> 5bp) 16983406 16985993 19587480 19584893 NC_060939.1 NC_000015.10 99.73 True local misassembly 16981051 16982725 19589156 19587481 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 16978494 16980879 19591544 19589157 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 16975937 16978322 19593931 19591545 NC_060939.1 NC_000015.10 99.37 True indel: indel (> 5bp) 16973380 16975765 19596319 19593932 NC_060939.1 NC_000015.10 98.79 True indel: indel (> 5bp) 16970823 16973208 19598704 19596320 NC_060939.1 NC_000015.10 99.54 True indel: indel (> 5bp) 16968094 16970651 19601259 19598705 NC_060939.1 NC_000015.10 99.14 True local misassembly 16966048 16968093 19603644 19601598 NC_060939.1 NC_000015.10 98.14 True local misassembly 16963321 16965367 19605692 19603645 NC_060939.1 NC_000015.10 98.88 True indel: indel (> 5bp) 16960595 16963154 19608253 19605693 NC_060939.1 NC_000015.10 99.34 True indel: indel (> 5bp) 16958038 16960423 19610639 19608254 NC_060939.1 NC_000015.10 99.41 True indel: indel (> 5bp) 16955481 16957866 19613028 19610640 NC_060939.1 NC_000015.10 99.71 True local misassembly 16952912 16955480 19616102 19613538 NC_060939.1 NC_000015.10 99.34 True indel: indel (> 5bp) 16950367 16952740 19618476 19616103 NC_060939.1 NC_000015.10 99.33 True indel: indel (> 5bp) 16947810 16950195 19620863 19618477 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 16945253 16947638 19623249 19620864 NC_060939.1 NC_000015.10 99.46 True indel: indel (> 5bp) 16943646 16945081 19624686 19623250 NC_060939.1 NC_000015.10 99.23 True indel: indel (> 5bp) 16942696 16943624 19625615 19624687 NC_060939.1 NC_000015.10 99.14 True indel: indel (> 5bp) 16940139 16942524 19628001 19625616 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 16937582 16939967 19630387 19628002 NC_060939.1 NC_000015.10 99.71 True local misassembly 16934345 16936730 19632774 19630388 NC_060939.1 NC_000015.10 99.41 True indel: indel (> 5bp) 16931788 16934173 19635160 19632775 NC_060939.1 NC_000015.10 99.5 True local misassembly 16927624 16931787 19639838 19635670 NC_060939.1 NC_000015.10 99.16 True local misassembly 16924117 16926245 19642645 19640517 NC_060939.1 NC_000015.10 98.97 True indel: indel (> 5bp) 16921662 16923945 19644929 19642646 NC_060939.1 NC_000015.10 99.74 True local misassembly 16920804 16921661 19646296 19645439 NC_060939.1 NC_000015.10 99.77 True local misassembly 16919003 16920803 19648773 19646978 NC_060939.1 NC_000015.10 99.17 True indel: indel (> 5bp) 16916446 16918831 19651159 19648774 NC_060939.1 NC_000015.10 99.62 True indel: indel (> 5bp) 16913037 16916274 19654395 19651160 NC_060939.1 NC_000015.10 98.83 True indel: indel (> 5bp) 16910652 16912865 19656608 19654396 NC_060939.1 NC_000015.10 99.5 True indel: indel (> 5bp) 16908101 16910480 19658987 19656609 NC_060939.1 NC_000015.10 99.75 True local misassembly 16904430 16908100 19663169 19659497 NC_060939.1 NC_000015.10 99.21 True local misassembly 16902301 16904429 19665978 19663850 NC_060939.1 NC_000015.10 99.53 True local misassembly 16899584 16902300 19669885 19667169 NC_060939.1 NC_000015.10 98.64 True indel: indel (> 5bp) 16898660 16899411 19670637 19669886 NC_060939.1 NC_000015.10 99.34 True local misassembly 16894992 16897559 19674977 19672410 NC_060939.1 NC_000015.10 99.18 True local misassembly 16892073 16894458 19677899 19675513 NC_060939.1 NC_000015.10 99.71 True indel: indel (> 5bp) 16891090 16891901 19678712 19677900 NC_060939.1 NC_000015.10 99.38 True fake: not a misassembly (possible transposable element) 17612599 17615664 19682155 19679090 NC_060939.1 NC_000015.10 98.86 True fake: not a misassembly (possible transposable element) 16883042 16885427 19684541 19682156 NC_060939.1 NC_000015.10 99.83 True indel: indel (> 5bp) 16880485 16882870 19686927 19684542 NC_060939.1 NC_000015.10 98.62 True indel: indel (> 5bp) 16877928 16880313 19689314 19686928 NC_060939.1 NC_000015.10 99.58 True indel: indel (> 5bp) 16874691 16877756 19692380 19689315 NC_060939.1 NC_000015.10 99.48 True fake: not a misassembly (possible transposable element) 17599133 17602198 19695446 19692381 NC_060939.1 NC_000015.10 99.25 True fake: not a misassembly (possible transposable element) 16869577 16871962 19697832 19695447 NC_060939.1 NC_000015.10 99.83 True indel: indel (> 5bp) 16866340 16869405 19700899 19697833 NC_060939.1 NC_000015.10 99.61 True indel: indel (> 5bp) 16861226 16866168 19705840 19700900 NC_060939.1 NC_000015.10 99.35 True indel: indel (> 5bp) 16857742 16861054 19709155 19705841 NC_060939.1 NC_000015.10 99.13 True indel: indel (> 5bp) 16856801 16857741 19710117 19709177 NC_060939.1 NC_000015.10 99.36 True relocation, inconsistency = -727316 17581234 17583618 19713000 19710616 NC_060939.1 NC_000015.10 99.75 True indel: indel (> 5bp) 17578677 17581062 19715385 19713001 NC_060939.1 NC_000015.10 99.71 True indel: indel (> 5bp) 17576222 17578505 19717669 19715386 NC_060939.1 NC_000015.10 99.69 True local misassembly 17573563 17575541 19719648 19717670 NC_060939.1 NC_000015.10 99.65 True indel: indel (> 5bp) 17571006 17573391 19722034 19719649 NC_060939.1 NC_000015.10 99.37 True indel: indel (> 5bp) 17568449 17570834 19724419 19722035 NC_060939.1 NC_000015.10 98.03 True indel: indel (> 5bp) 17567443 17568277 19725254 19724420 NC_060939.1 NC_000015.10 98.44 True relocation, scaffold gap is present, inconsistency = 44031 17662317 17665708 19775263 19778655 NC_060939.1 NC_000015.10 98.0 True local misassembly 17666389 17668311 19778656 19780580 NC_060939.1 NC_000015.10 97.87 True local misassembly 17668825 17670202 19780581 19781952 NC_060939.1 NC_000015.10 96.14 True relocation, inconsistency = 15670 17685873 18005455 19781953 20100926 NC_060939.1 NC_000015.10 99.49 True local misassembly 18007106 18601053 20101754 20689102 NC_060939.1 NC_000015.10 97.83 True relocation, scaffold gap is present, inconsistency = 816155 19457946 19942570 21193482 20729840 NC_060939.1 NC_000015.10 95.21 True relocation, scaffold gap is present, inconsistency = 282655 18585035 19126682 21242091 21778502 NC_060939.1 NC_000015.10 97.79 True relocation, scaffold gap is present, inconsistency = -442559 18734124 19214477 21828503 22308242 NC_060939.1 NC_000015.10 99.2 True relocation, scaffold gap is present, inconsistency = 765857 20030335 20907316 22358243 23223524 NC_060939.1 NC_000015.10 98.38 True relocation, scaffold gap is present, inconsistency = 54451 21015118 21018073 23276875 23279830 NC_060939.1 NC_000015.10 99.93 True local misassembly 21018074 21028497 23280815 23291221 NC_060939.1 NC_000015.10 99.72 True local misassembly 21048618 43085642 23311345 45277714 NC_060939.1 NC_000015.10 99.4 True local misassembly 43085955 74897396 45277715 77038250 NC_060939.1 NC_000015.10 99.41 True local misassembly 74900940 82121392 77040381 84250804 NC_060939.1 NC_000015.10 99.55 True relocation, scaffold gap is present, inconsistency = -25279 82166072 82168143 84320763 84322821 NC_060939.1 NC_000015.10 95.66 True relocation, inconsistency = -93099 82177828 95421523 84425605 97656228 NC_060939.1 NC_000015.10 99.68 True local misassembly 95423217 99750708 97657565 101981182 NC_060939.1 NC_000015.10 98.92 True CONTIG NC_000015.10 101991189 misassembled 18615748 19062249 1 448248 NC_060939.1 NT_187382.1 98.91 True CONTIG NT_187382.1 448248 correct 3491 1254476 10573 1238837 NC_060940.1 NC_000016.10 97.22 True local misassembly 1263139 2670293 1247504 2648142 NC_060940.1 NC_000016.10 99.01 True local misassembly 2670672 15116748 2650477 15115698 NC_060940.1 NC_000016.10 99.23 True fake: not a misassembly (possible transposable element) 15116749 15117408 15116375 15115717 NC_060940.1 NC_000016.10 99.55 True fake: not a misassembly (possible transposable element) 15117409 19182864 15116450 19252352 NC_060940.1 NC_000016.10 97.9 True indel: indel (> 5bp) 19183191 21517867 19252544 21583121 NC_060940.1 NC_000016.10 99.55 True inversion 21780282 22633819 22436934 21583122 NC_060940.1 NC_000016.10 99.82 True relocation, inconsistency = 80749 22714569 28752507 22436935 28471892 NC_060940.1 NC_000016.10 99.42 True relocation, inconsistency = -133316 28752508 28923836 28643180 28471893 NC_060940.1 NC_000016.10 99.2 True inversion 28923837 29508118 28643181 29226811 NC_060940.1 NC_000016.10 99.43 True local misassembly 29508659 33225176 29227350 32811470 NC_060940.1 NC_000016.10 96.15 True relocation, inconsistency = -154927 33070250 33473201 33214595 32811471 NC_060940.1 NC_000016.10 99.89 True relocation, scaffold gap is present, inconsistency = -110081 33059715 33130330 33335208 33264596 NC_060940.1 NC_000016.10 99.67 True relocation, inconsistency = 452537 33607426 33638092 33359767 33390433 NC_060940.1 NC_000016.10 99.97 True indel: indel (> 5bp) 33638093 33639988 33390457 33392355 NC_060940.1 NC_000016.10 99.84 True relocation, scaffold gap is present, inconsistency = 1324558 35064152 35867762 33491961 34289324 NC_060940.1 NC_000016.10 98.67 True relocation, scaffold gap is present, inconsistency = 3138651 39056419 39168862 34339330 34451774 NC_060940.1 NC_000016.10 99.98 True relocation, inconsistency = 63209 39232072 39265214 34451775 34484905 NC_060940.1 NC_000016.10 99.9 True indel: indel (> 5bp) 39265238 39301819 34484906 34521510 NC_060940.1 NC_000016.10 99.68 True relocation, scaffold gap is present, inconsistency = 1143065 40494885 40496544 34573170 34571511 NC_060940.1 NC_000016.10 98.86 True relocation, inconsistency = 11685715 52182687 52183336 34573598 34574246 NC_060940.1 NC_000016.10 97.69 True relocation, inconsistency = 2902268 49277886 49279974 34576757 34574691 NC_060940.1 NC_000016.10 96.84 True relocation, scaffold gap is present, inconsistency = 9715984 39554574 39557693 34584085 34580966 NC_060940.1 NC_000016.10 99.74 True fake: scaffold gap size wrong estimation (local) 39551834 39553580 34586369 34584623 NC_060940.1 NC_000016.10 99.83 True local misassembly 39217579 39551351 34911320 34587056 NC_060940.1 NC_000016.10 97.12 True local misassembly 37857995 39215456 36260386 34913438 NC_060940.1 NC_000016.10 99.17 True relocation, scaffold gap is present, inconsistency = -44481 37850211 37851703 36312651 36311159 NC_060940.1 NC_000016.10 98.06 True local misassembly 37849320 37850210 36313884 36312994 NC_060940.1 NC_000016.10 96.18 True fake: scaffold gap size wrong estimation (local) 37846767 37848908 36317920 36315779 NC_060940.1 NC_000016.10 99.77 True local misassembly 37845569 37846096 36320482 36319955 NC_060940.1 NC_000016.10 100.0 True local misassembly 37844020 37844986 36325098 36324132 NC_060940.1 NC_000016.10 97.31 True local misassembly 37842164 37842848 36327984 36327300 NC_060940.1 NC_000016.10 99.71 True fake: scaffold gap size wrong estimation (local) 37834143 37835151 36335571 36334563 NC_060940.1 NC_000016.10 99.7 True relocation, scaffold gap is present, inconsistency = 1971494 35853803 35858807 36339413 36344423 NC_060940.1 NC_000016.10 95.01 True local misassembly 35859825 35861743 36344424 36346345 NC_060940.1 NC_000016.10 97.24 True local misassembly 35862422 35869321 36346346 36353260 NC_060940.1 NC_000016.10 95.78 True relocation, inconsistency = 28574 35897945 35901705 36353310 36357063 NC_060940.1 NC_000016.10 98.72 True relocation, inconsistency = 614566 36516849 36530394 36357641 36371185 NC_060940.1 NC_000016.10 99.22 True local misassembly 36531168 36550280 36371279 36390395 NC_060940.1 NC_000016.10 99.14 True local misassembly 36550281 36551830 36391411 36392960 NC_060940.1 NC_000016.10 98.77 True local misassembly 36552171 36555112 36392961 36395903 NC_060940.1 NC_000016.10 99.42 True local misassembly 36556811 36569471 36395904 36408562 NC_060940.1 NC_000016.10 99.27 True relocation, inconsistency = 1047080 37616645 37633886 36408656 36425894 NC_060940.1 NC_000016.10 99.08 True local misassembly 37633887 37638092 36426915 36431119 NC_060940.1 NC_000016.10 99.31 True local misassembly 37638093 37655413 36432480 36449814 NC_060940.1 NC_000016.10 99.05 True local misassembly 37655414 37659832 36451512 36455932 NC_060940.1 NC_000016.10 98.94 True local misassembly 37659833 37665220 36456274 36461665 NC_060940.1 NC_000016.10 99.17 True local misassembly 37666918 37687616 36461666 36482376 NC_060940.1 NC_000016.10 99.1 True local misassembly 37687957 37693718 36482377 36488144 NC_060940.1 NC_000016.10 98.96 True local misassembly 37695416 37696906 36488145 36489636 NC_060940.1 NC_000016.10 99.4 True local misassembly 37697247 37699082 36489637 36491474 NC_060940.1 NC_000016.10 99.18 True local misassembly 37699845 37729690 36491558 36521408 NC_060940.1 NC_000016.10 98.96 True relocation, inconsistency = -1100038 36630211 36647238 36521967 36538990 NC_060940.1 NC_000016.10 98.99 True local misassembly 36648252 36651925 36538991 36542670 NC_060940.1 NC_000016.10 98.83 True relocation, inconsistency = -150849 36501125 36510918 36542719 36552506 NC_060940.1 NC_000016.10 99.36 True local misassembly 36510919 36515876 36553521 36558478 NC_060940.1 NC_000016.10 99.5 True local misassembly 36515877 36546919 36559498 36590518 NC_060940.1 NC_000016.10 99.32 True local misassembly 36549299 36557578 36590519 36598791 NC_060940.1 NC_000016.10 99.03 True local misassembly 36558352 36562675 36598885 36603207 NC_060940.1 NC_000016.10 99.54 True local misassembly 36563016 36577966 36603208 36618164 NC_060940.1 NC_000016.10 99.25 True local misassembly 36578740 36586461 36618258 36625981 NC_060940.1 NC_000016.10 99.4 True local misassembly 36587235 36592487 36626075 36631326 NC_060940.1 NC_000016.10 99.39 True local misassembly 36592488 36603130 36632686 36643326 NC_060940.1 NC_000016.10 99.35 True local misassembly 36603131 36604673 36644346 36645887 NC_060940.1 NC_000016.10 99.03 True local misassembly 36605014 36613219 36645888 36654094 NC_060940.1 NC_000016.10 99.32 True local misassembly 36613220 36615426 36654435 36656641 NC_060940.1 NC_000016.10 99.41 True local misassembly 36615767 36618187 36656642 36659055 NC_060940.1 NC_000016.10 99.22 True local misassembly 36618188 36623022 36659396 36664229 NC_060940.1 NC_000016.10 99.3 True local misassembly 36623023 36627664 36664566 36669206 NC_060940.1 NC_000016.10 99.1 True fake: scaffold gap size wrong estimation (local) 36627834 36631576 36669488 36673230 NC_060940.1 NC_000016.10 99.51 True relocation, inconsistency = -139656 36491921 36496443 36673231 36677753 NC_060940.1 NC_000016.10 99.12 True local misassembly 36497881 36502028 36678172 36682318 NC_060940.1 NC_000016.10 99.49 True local misassembly 36502029 36528695 36683678 36710334 NC_060940.1 NC_000016.10 99.36 True local misassembly 36529465 36533362 36710426 36714322 NC_060940.1 NC_000016.10 99.23 True local misassembly 36535181 36543356 36714442 36722619 NC_060940.1 NC_000016.10 98.69 True local misassembly 36543697 36546919 36722620 36725836 NC_060940.1 NC_000016.10 99.13 True local misassembly 36547600 36563909 36725837 36742142 NC_060940.1 NC_000016.10 99.39 True local misassembly 36564590 36565266 36742143 36742819 NC_060940.1 NC_000016.10 99.11 True local misassembly 36566626 36569890 36742820 36746083 NC_060940.1 NC_000016.10 98.47 True relocation, inconsistency = 21404 36591307 36591986 36746096 36746775 NC_060940.1 NC_000016.10 99.41 True local misassembly 36593346 36593972 36746776 36747402 NC_060940.1 NC_000016.10 95.69 True local misassembly 36595082 36596025 36747833 36748779 NC_060940.1 NC_000016.10 95.67 True local misassembly 36596366 36613212 36748780 36765624 NC_060940.1 NC_000016.10 99.2 True local misassembly 36613213 36618257 36765965 36771013 NC_060940.1 NC_000016.10 98.83 True local misassembly 36619957 36623022 36771014 36774079 NC_060940.1 NC_000016.10 99.28 True local misassembly 36623023 36631188 36774420 36782578 NC_060940.1 NC_000016.10 99.39 True local misassembly 36631869 36643209 36782579 36793907 NC_060940.1 NC_000016.10 98.77 True local misassembly 36643550 36644098 36793908 36794452 NC_060940.1 NC_000016.10 98.6 True relocation, inconsistency = -310880 36333219 36344253 36794453 36805494 NC_060940.1 NC_000016.10 99.18 True local misassembly 36344594 36352805 36805495 36813701 NC_060940.1 NC_000016.10 99.28 True local misassembly 36352806 36366379 36814042 36827618 NC_060940.1 NC_000016.10 99.44 True local misassembly 36366380 36369319 36828639 36831577 NC_060940.1 NC_000016.10 98.98 True local misassembly 36369320 36375128 36831918 36837728 NC_060940.1 NC_000016.10 99.41 True local misassembly 36375129 36377324 36838069 36840266 NC_060940.1 NC_000016.10 99.41 True local misassembly 36377664 36390165 36840267 36852763 NC_060940.1 NC_000016.10 98.74 True local misassembly 36390506 36406862 36852764 36869121 NC_060940.1 NC_000016.10 99.41 True local misassembly 36409039 36409655 36869259 36869871 NC_060940.1 NC_000016.10 98.54 True local misassembly 36409996 36418914 36869872 36878789 NC_060940.1 NC_000016.10 99.17 True local misassembly 36421626 36429313 36878790 36886473 NC_060940.1 NC_000016.10 99.48 True local misassembly 36429658 36442944 36886474 36899755 NC_060940.1 NC_000016.10 99.26 True local misassembly 36443625 36446587 36899756 36902715 NC_060940.1 NC_000016.10 98.72 True local misassembly 36446588 36450196 36904072 36907682 NC_060940.1 NC_000016.10 99.09 True local misassembly 36450197 36459967 36908023 36917790 NC_060940.1 NC_000016.10 98.97 True local misassembly 36459968 36476026 36919492 36935554 NC_060940.1 NC_000016.10 99.38 True local misassembly 36476800 36478487 36935648 36937335 NC_060940.1 NC_000016.10 99.07 True relocation, inconsistency = 339185 36817673 36856522 36937336 36976179 NC_060940.1 NC_000016.10 99.04 True relocation, inconsistency = -797649 36058874 36062870 36976180 36980177 NC_060940.1 NC_000016.10 98.3 True local misassembly 36064564 36067343 36980178 36982965 NC_060940.1 NC_000016.10 98.85 True local misassembly 36068024 36086452 36982966 37001428 NC_060940.1 NC_000016.10 98.7 True relocation, inconsistency = 1524663 37611116 37636038 37001429 37026362 NC_060940.1 NC_000016.10 99.18 True local misassembly 37636379 37644576 37026363 37034562 NC_060940.1 NC_000016.10 99.3 True local misassembly 37647976 37656006 37034563 37042593 NC_060940.1 NC_000016.10 99.19 True relocation, inconsistency = -1061673 36594334 36613168 37042594 37061426 NC_060940.1 NC_000016.10 99.43 True local misassembly 36613169 36619016 37061767 37067615 NC_060940.1 NC_000016.10 98.32 True local misassembly 36619017 36624526 37067956 37073465 NC_060940.1 NC_000016.10 98.66 True relocation, inconsistency = 1058260 37683469 37701157 37074148 37091851 NC_060940.1 NC_000016.10 99.18 True local misassembly 37701158 37707488 37092867 37099203 NC_060940.1 NC_000016.10 99.13 True local misassembly 37707829 37713264 37099204 37104640 NC_060940.1 NC_000016.10 98.47 True local misassembly 37713605 37717771 37104641 37108811 NC_060940.1 NC_000016.10 99.14 True relocation, inconsistency = -1174456 36543996 36564174 37109492 37129666 NC_060940.1 NC_000016.10 99.44 True local misassembly 36564515 36587373 37129667 37152512 NC_060940.1 NC_000016.10 99.38 True relocation, inconsistency = -168188 36419186 36420199 37152513 37153527 NC_060940.1 NC_000016.10 99.26 True relocation, inconsistency = 167174 36587374 36601781 37153528 37167936 NC_060940.1 NC_000016.10 99.32 True local misassembly 36602462 36611481 37167937 37176946 NC_060940.1 NC_000016.10 99.24 True local misassembly 36613521 36623022 37176947 37186439 NC_060940.1 NC_000016.10 99.26 True local misassembly 36623023 36626585 37186782 37190338 NC_060940.1 NC_000016.10 99.07 True local misassembly 36627266 36632105 37190339 37195179 NC_060940.1 NC_000016.10 99.07 True local misassembly 36632106 36637875 37196195 37201965 NC_060940.1 NC_000016.10 99.29 True relocation, inconsistency = 1008681 37646557 37669749 37201966 37225140 NC_060940.1 NC_000016.10 99.18 True local misassembly 37670430 37686730 37225141 37241443 NC_060940.1 NC_000016.10 99.07 True local misassembly 37687410 37690126 37241444 37244156 NC_060940.1 NC_000016.10 99.12 True local misassembly 37690807 37699128 37244157 37252480 NC_060940.1 NC_000016.10 99.21 True local misassembly 37699564 37711245 37253596 37265271 NC_060940.1 NC_000016.10 99.09 True local misassembly 37711586 37714787 37265272 37268476 NC_060940.1 NC_000016.10 99.16 True relocation, inconsistency = -1339244 36375544 36388373 37268477 37281308 NC_060940.1 NC_000016.10 99.34 True local misassembly 36388714 36403362 37281309 37295958 NC_060940.1 NC_000016.10 99.12 True relocation, inconsistency = 541214 36944928 36971759 37296310 37323154 NC_060940.1 NC_000016.10 99.12 True relocation, inconsistency = -415825 36556363 36571593 37323583 37338808 NC_060940.1 NC_000016.10 99.12 True relocation, inconsistency = 414129 36985723 36997125 37338809 37350210 NC_060940.1 NC_000016.10 99.09 True local misassembly 36997466 37002027 37350211 37354769 NC_060940.1 NC_000016.10 98.16 True relocation, inconsistency = -457279 36544924 36555879 37354945 37365892 NC_060940.1 NC_000016.10 99.4 True local misassembly 36556653 36571170 37365986 37380491 NC_060940.1 NC_000016.10 99.24 True relocation, inconsistency = -416474 36154697 36173404 37380492 37399207 NC_060940.1 NC_000016.10 99.27 True local misassembly 36173745 36176399 37399208 37401864 NC_060940.1 NC_000016.10 98.76 True local misassembly 36177205 36195163 37401990 37419949 NC_060940.1 NC_000016.10 99.16 True local misassembly 36196863 36203577 37419950 37426669 NC_060940.1 NC_000016.10 99.15 True local misassembly 36204370 36225684 37426784 37448099 NC_060940.1 NC_000016.10 99.13 True local misassembly 36226025 36234731 37448100 37456801 NC_060940.1 NC_000016.10 99.21 True local misassembly 36234732 36239350 37457816 37462435 NC_060940.1 NC_000016.10 99.52 True relocation, scaffold gap is present, inconsistency = 77037 36320801 36330567 37466849 37476631 NC_060940.1 NC_000016.10 98.52 True local misassembly 36330908 36334020 37476632 37479744 NC_060940.1 NC_000016.10 98.81 True local misassembly 36334021 36343184 37480759 37489924 NC_060940.1 NC_000016.10 99.17 True local misassembly 36343958 36348013 37490018 37494073 NC_060940.1 NC_000016.10 98.67 True local misassembly 36348485 36352805 37495220 37499540 NC_060940.1 NC_000016.10 99.33 True local misassembly 36352806 36360256 37499881 37507333 NC_060940.1 NC_000016.10 99.52 True local misassembly 36360257 36366153 37507672 37513564 NC_060940.1 NC_000016.10 99.1 True local misassembly 36366494 36369273 37513565 37516349 NC_060940.1 NC_000016.10 99.1 True local misassembly 36370633 36396063 37516350 37541767 NC_060940.1 NC_000016.10 99.34 True local misassembly 36396744 36410311 37541768 37555325 NC_060940.1 NC_000016.10 98.87 True relocation, inconsistency = 98867 36509179 36513681 37555326 37559819 NC_060940.1 NC_000016.10 99.17 True local misassembly 36514022 36518547 37559820 37564343 NC_060940.1 NC_000016.10 99.29 True local misassembly 36519907 36526388 37564344 37570827 NC_060940.1 NC_000016.10 98.98 True local misassembly 36526729 36533792 37570828 37577887 NC_060940.1 NC_000016.10 99.35 True local misassembly 36534566 36540588 37577981 37584002 NC_060940.1 NC_000016.10 99.4 True relocation, inconsistency = -212007 36328611 36346582 37584032 37602010 NC_060940.1 NC_000016.10 99.11 True local misassembly 36346923 36367665 37602011 37622748 NC_060940.1 NC_000016.10 99.15 True relocation, inconsistency = 211340 36579006 36584779 37622749 37628527 NC_060940.1 NC_000016.10 99.26 True local misassembly 36585525 36603823 37628592 37646875 NC_060940.1 NC_000016.10 99.26 True relocation, inconsistency = -213379 36390506 36399176 37646937 37655608 NC_060940.1 NC_000016.10 99.41 True relocation, inconsistency = -339904 36059554 36067179 37655890 37663531 NC_060940.1 NC_000016.10 98.82 True relocation, inconsistency = 166367 36233547 36242674 37663532 37672655 NC_060940.1 NC_000016.10 99.09 True local misassembly 36243448 36250729 37672749 37680034 NC_060940.1 NC_000016.10 99.31 True local misassembly 36250730 36254609 37680375 37684252 NC_060940.1 NC_000016.10 99.05 True relocation, inconsistency = 662455 36917410 36918044 37684598 37685232 NC_060940.1 NC_000016.10 99.37 True local misassembly 36918385 36936729 37685233 37703576 NC_060940.1 NC_000016.10 98.86 True local misassembly 36937070 36939905 37703577 37706412 NC_060940.1 NC_000016.10 99.4 True local misassembly 36940246 36942253 37706413 37708419 NC_060940.1 NC_000016.10 99.5 True local misassembly 36942594 36943441 37708420 37709268 NC_060940.1 NC_000016.10 99.14 True relocation, inconsistency = -415842 36527600 36544263 37709269 37725929 NC_060940.1 NC_000016.10 99.15 True relocation, inconsistency = 60484 36604974 36613738 37726156 37734919 NC_060940.1 NC_000016.10 98.31 True relocation, inconsistency = -60484 36553255 36556400 37734920 37738066 NC_060940.1 NC_000016.10 98.89 True local misassembly 36556741 36563746 37738067 37745063 NC_060940.1 NC_000016.10 99.27 True relocation, inconsistency = -217792 36345955 36399966 37745064 37798372 NC_060940.1 NC_000016.10 96.51 True relocation, inconsistency = 547670 36947637 36974235 37798373 37824640 NC_060940.1 NC_000016.10 97.49 True relocation, inconsistency = 575881 37550247 37553945 37824771 37828466 NC_060940.1 NC_000016.10 96.38 True relocation, inconsistency = -1393237 36161789 36163280 37829547 37831038 NC_060940.1 NC_000016.10 99.33 True local misassembly 36163621 36167979 37831039 37835402 NC_060940.1 NC_000016.10 99.08 True local misassembly 36167980 36169916 37835743 37837681 NC_060940.1 NC_000016.10 98.14 True local misassembly 36170255 36183374 37837682 37850798 NC_060940.1 NC_000016.10 98.93 True relocation, inconsistency = 200049 36383424 36384564 37850799 37851937 NC_060940.1 NC_000016.10 99.41 True local misassembly 36384565 36394740 37852278 37862446 NC_060940.1 NC_000016.10 99.04 True local misassembly 36394741 36396961 37863462 37865684 NC_060940.1 NC_000016.10 98.97 True local misassembly 36397302 36399926 37865685 37868309 NC_060940.1 NC_000016.10 99.7 True local misassembly 36400700 36407996 37868403 37875703 NC_060940.1 NC_000016.10 99.16 True local misassembly 36408340 36409065 37875704 37876428 NC_060940.1 NC_000016.10 97.78 True relocation, inconsistency = 1246509 37655575 37681900 37876429 37902754 NC_060940.1 NC_000016.10 99.0 True relocation, inconsistency = -89329 37592572 37607088 37902755 37917275 NC_060940.1 NC_000016.10 98.78 True relocation, inconsistency = 88647 37695826 37696763 37917366 37918304 NC_060940.1 NC_000016.10 99.36 True local misassembly 37697104 37701203 37918305 37922404 NC_060940.1 NC_000016.10 99.37 True relocation, inconsistency = -89666 37611538 37621390 37922405 37932259 NC_060940.1 NC_000016.10 99.22 True local misassembly 37621730 37626495 37932260 37937025 NC_060940.1 NC_000016.10 98.97 True local misassembly 37626836 37627374 37937026 37937564 NC_060940.1 NC_000016.10 99.63 True local misassembly 37627715 37636342 37937565 37946193 NC_060940.1 NC_000016.10 98.95 True relocation, scaffold gap is present, inconsistency = -1121236 36515362 36523163 37946449 37954245 NC_060940.1 NC_000016.10 99.32 True fake: scaffold gap size wrong estimation (local) 36525556 36536501 37956526 37967468 NC_060940.1 NC_000016.10 98.99 True local misassembly 36536502 36552907 37967810 37984205 NC_060940.1 NC_000016.10 99.19 True relocation, inconsistency = -177700 36375208 36376015 37984206 37985009 NC_060940.1 NC_000016.10 99.37 True local misassembly 36376696 36389318 37985010 37997633 NC_060940.1 NC_000016.10 99.29 True local misassembly 36389319 36403757 37997974 38012401 NC_060940.1 NC_000016.10 99.16 True relocation, inconsistency = 702594 37106650 37197871 38012700 38104565 NC_060940.1 NC_000016.10 97.75 True relocation, inconsistency = -935293 36262579 36276326 38104566 38118658 NC_060940.1 NC_000016.10 95.59 True relocation, inconsistency = 640724 36917051 36918763 38118659 38120372 NC_060940.1 NC_000016.10 99.22 True local misassembly 36918764 36922799 38120706 38124748 NC_060940.1 NC_000016.10 98.91 True local misassembly 36922800 36931153 38125090 38133440 NC_060940.1 NC_000016.10 98.92 True local misassembly 36931493 36932694 38133441 38134641 NC_060940.1 NC_000016.10 98.92 True local misassembly 36933035 36966719 38134642 38168336 NC_060940.1 NC_000016.10 99.03 True relocation, inconsistency = -401559 36565548 36604479 38168724 38207661 NC_060940.1 NC_000016.10 98.94 True local misassembly 36604820 36611895 38207662 38214735 NC_060940.1 NC_000016.10 99.21 True local misassembly 36613255 36621663 38214736 38223138 NC_060940.1 NC_000016.10 99.35 True local misassembly 36623023 36634580 38223139 38234699 NC_060940.1 NC_000016.10 99.19 True local misassembly 36634581 36646632 38235380 38247437 NC_060940.1 NC_000016.10 98.94 True local misassembly 36647648 36650880 38247438 38250673 NC_060940.1 NC_000016.10 99.07 True local misassembly 36651896 36654871 38250674 38253656 NC_060940.1 NC_000016.10 98.22 True relocation, inconsistency = 969461 37625457 37636342 38254781 38265669 NC_060940.1 NC_000016.10 99.38 True relocation, scaffold gap is present, inconsistency = 164276 37800719 37804045 38269096 38265770 NC_060940.1 NC_000016.10 99.76 True fake: scaffold gap size wrong estimation (local) 37795163 37796774 38277372 38275761 NC_060940.1 NC_000016.10 96.46 True local misassembly 37794926 37796166 38280664 38279422 NC_060940.1 NC_000016.10 97.43 True relocation, scaffold gap is present, inconsistency = 6281334 52177920 78168088 46381084 72351794 NC_060940.1 NC_000016.10 99.62 True indel: indel (> 5bp) 78168397 80149392 72351999 74331604 NC_060940.1 NC_000016.10 99.68 True relocation, inconsistency = 228921 80378314 88194329 74331605 82130592 NC_060940.1 NC_000016.10 99.43 True local misassembly 88194392 91221204 82130903 85155130 NC_060940.1 NC_000016.10 99.57 True fake: not a misassembly (possible transposable element) 91221220 91222284 85156195 85155131 NC_060940.1 NC_000016.10 98.6 True fake: not a misassembly (possible transposable element) 91222305 95937225 85156196 89852332 NC_060940.1 NC_000016.10 98.7 True indel: indel (> 5bp) 95937446 95992455 89852587 89907375 NC_060940.1 NC_000016.10 99.51 True local misassembly 95992779 96316463 89907475 90228345 NC_060940.1 NC_000016.10 98.72 True CONTIG NC_000016.10 90338345 misassembled 33066956 33107815 40861 1 NC_060940.1 NT_187383.1 99.94 True relocation, scaffold gap is present, inconsistency = 174580 32824661 32842375 108608 90862 NC_060940.1 NT_187383.1 98.98 True indel: indel (> 5bp) 32809816 32824660 123482 108655 NC_060940.1 NT_187383.1 98.66 True local misassembly 32803039 32809815 130473 123715 NC_060940.1 NT_187383.1 98.95 True local misassembly 32703521 32803038 230243 130710 NC_060940.1 NT_187383.1 99.79 True indel: indel (> 5bp) 32701621 32703487 232093 230244 NC_060940.1 NT_187383.1 98.13 True relocation, inconsistency = 27114 32673731 32674506 232861 232094 NC_060940.1 NT_187383.1 96.91 True local misassembly 32672010 32673134 234035 232948 NC_060940.1 NT_187383.1 95.73 True indel: indel (> 5bp) 32665892 32671980 240078 234036 NC_060940.1 NT_187383.1 98.09 True indel: indel (> 5bp) 32658812 32665717 247134 240221 NC_060940.1 NT_187383.1 99.55 True relocation, scaffold gap is present, inconsistency = 1811132 34526850 34679288 297135 446171 NC_060940.1 NT_187383.1 97.59 True relocation, scaffold gap is present, inconsistency = -276561 34452728 34640424 496172 680465 NC_060940.1 NT_187383.1 98.11 True relocation, scaffold gap is present, inconsistency = -157816 33923270 34560543 1367513 730466 NC_060940.1 NT_187383.1 99.86 True relocation, scaffold gap is present, inconsistency = -80524 33745578 33953778 1417529 1625402 NC_060940.1 NT_187383.1 99.75 True relocation, scaffold gap is present, inconsistency = 900837 32780177 32794740 1689966 1675403 NC_060940.1 NT_187383.1 99.23 True relocation, inconsistency = -2102162 34699027 34882338 1870029 1689967 NC_060940.1 NT_187383.1 96.31 True CONTIG NT_187383.1 1872759 misassembled 150551318 150554548 63225 60001 NC_060933.1 NC_000017.11 98.98 True local misassembly 150547740 150549961 65446 63226 NC_060933.1 NC_000017.11 99.05 True indel: indel (> 5bp) 150535823 150547739 77393 65479 NC_060933.1 NC_000017.11 99.2 True indel: indel (> 5bp) 150523041 150535822 90219 77432 NC_060933.1 NC_000017.11 99.34 True indel: indel (> 5bp) 150500046 150523040 113320 90363 NC_060933.1 NC_000017.11 99.01 True translocation 2193 5478 113566 116853 NC_060941.1 NC_000017.11 98.94 True local misassembly 10203 11388 116854 118039 NC_060941.1 NC_000017.11 98.57 True local misassembly 12208 16274 118040 122105 NC_060941.1 NC_000017.11 98.72 True local misassembly 20325 21251 122435 123361 NC_060941.1 NC_000017.11 98.38 True local misassembly 22049 22803 123362 124116 NC_060941.1 NC_000017.11 98.54 True local misassembly 23602 24316 124117 124831 NC_060941.1 NC_000017.11 98.18 True local misassembly 26140 28317 124832 127009 NC_060941.1 NC_000017.11 98.81 True local misassembly 31509 32581 127010 128082 NC_060941.1 NC_000017.11 99.07 True local misassembly 33608 41815 128083 136288 NC_060941.1 NC_000017.11 99.66 True indel: indel (> 5bp) 41816 46203 136376 140763 NC_060941.1 NC_000017.11 99.68 True indel: indel (> 5bp) 46494 59520 141205 154261 NC_060941.1 NC_000017.11 99.38 True indel: indel (> 5bp) 59595 72259 154262 166925 NC_060941.1 NC_000017.11 99.76 True local misassembly 72452 75076 168222 170846 NC_060941.1 NC_000017.11 99.58 True local misassembly 75077 94744 171859 191539 NC_060941.1 NC_000017.11 99.64 True local misassembly 96267 102310 192622 198664 NC_060941.1 NC_000017.11 99.42 True local misassembly 103276 106403 198665 201793 NC_060941.1 NC_000017.11 99.46 True local misassembly 106736 120871 201794 215929 NC_060941.1 NC_000017.11 99.87 True indel: indel (> 5bp) 120872 122271 216029 217432 NC_060941.1 NC_000017.11 99.15 True local misassembly 123039 123939 217433 218333 NC_060941.1 NC_000017.11 99.11 True local misassembly 124628 127210 218334 220905 NC_060941.1 NC_000017.11 98.68 True local misassembly 127211 138879 221176 232846 NC_060941.1 NC_000017.11 99.66 True indel: indel (> 5bp) 138880 139964 232868 233952 NC_060941.1 NC_000017.11 99.45 True local misassembly 140644 141775 234299 235431 NC_060941.1 NC_000017.11 99.21 True local misassembly 141776 147048 235782 241055 NC_060941.1 NC_000017.11 99.34 True indel: indel (> 5bp) 147049 148238 241077 242266 NC_060941.1 NC_000017.11 99.92 True indel: indel (> 5bp) 148307 156280 242267 250223 NC_060941.1 NC_000017.11 99.61 True indel: indel (> 5bp) 156550 159608 250604 253663 NC_060941.1 NC_000017.11 99.71 True local misassembly 160626 163212 254413 256999 NC_060941.1 NC_000017.11 97.18 True indel: indel (> 5bp) 163280 170584 257000 264304 NC_060941.1 NC_000017.11 99.43 True indel: indel (> 5bp) 170585 179124 264431 272967 NC_060941.1 NC_000017.11 99.8 True local misassembly 181001 181600 272968 273567 NC_060941.1 NC_000017.11 95.83 True local misassembly 185269 198658 273568 286967 NC_060941.1 NC_000017.11 99.74 True local misassembly 199107 204957 288734 294585 NC_060941.1 NC_000017.11 99.59 True local misassembly 205514 210111 295414 300010 NC_060941.1 NC_000017.11 99.5 True local misassembly 210112 213748 300431 304067 NC_060941.1 NC_000017.11 99.81 True indel: indel (> 5bp) 213818 214748 304068 304998 NC_060941.1 NC_000017.11 99.03 True local misassembly 215365 217602 304999 307219 NC_060941.1 NC_000017.11 98.97 True indel: indel (> 5bp) 217603 224994 307284 314675 NC_060941.1 NC_000017.11 99.89 True relocation, inconsistency = 8919 234386 236445 315148 317207 NC_060941.1 NC_000017.11 99.85 True local misassembly 236660 239367 317208 319915 NC_060941.1 NC_000017.11 99.93 True indel: indel (> 5bp) 239493 260017 319916 340442 NC_060941.1 NC_000017.11 99.89 True local misassembly 261101 266048 340699 345640 NC_060941.1 NC_000017.11 99.74 True indel: indel (> 5bp) 266049 273892 345679 353520 NC_060941.1 NC_000017.11 99.81 True local misassembly 274378 276570 353521 355713 NC_060941.1 NC_000017.11 99.5 True local misassembly 278367 370084 356650 448188 NC_060941.1 NC_000017.11 97.18 True relocation, scaffold gap is present, inconsistency = -38670 372214 373621 488988 490395 NC_060941.1 NC_000017.11 99.86 True fake: scaffold gap size wrong estimation (local) 374410 5877364 491112 5982838 NC_060941.1 NC_000017.11 98.99 True indel: stretch of mismatches 5877631 11602723 5983105 11694656 NC_060941.1 NC_000017.11 99.48 True indel: indel (> 5bp) 11602692 13689956 11694673 13782842 NC_060941.1 NC_000017.11 99.71 True local misassembly 13691614 16716173 13783775 16813463 NC_060941.1 NC_000017.11 99.53 True relocation, inconsistency = 43046 16767176 19050940 16821420 19102950 NC_060941.1 NC_000017.11 99.6 True relocation, inconsistency = -39805 19011136 19097129 19188914 19102951 NC_060941.1 NC_000017.11 99.66 True relocation, inconsistency = 39787 19137349 21744527 19189347 21795704 NC_060941.1 NC_000017.11 99.8 True relocation, scaffold gap is present, inconsistency = 22115 21785067 21946745 21814129 21973595 NC_060941.1 NC_000017.11 98.13 True local misassembly 21947773 21956955 21975455 21984549 NC_060941.1 NC_000017.11 96.27 True fake: scaffold gap size wrong estimation (local) 21957918 21960209 21989757 21992058 NC_060941.1 NC_000017.11 95.26 True relocation, scaffold gap is present, inconsistency = 697985 22708198 22755307 22042062 22089188 NC_060941.1 NC_000017.11 99.3 True fake: scaffold gap size wrong estimation (local) 22755450 23454168 22089411 22763597 NC_060941.1 NC_000017.11 95.12 True relocation, scaffold gap is present, inconsistency = -30766 23473507 23474852 22813702 22815072 NC_060941.1 NC_000017.11 95.92 True indel: indel (<= 5bp) 23475016 23480170 22815235 22820392 NC_060941.1 NC_000017.11 97.96 True local misassembly 23481357 23521319 22820393 22860349 NC_060941.1 NC_000017.11 98.49 True local misassembly 23521320 23659290 22861542 22999538 NC_060941.1 NC_000017.11 98.5 True local misassembly 23660477 23706313 22999539 23045384 NC_060941.1 NC_000017.11 98.45 True local misassembly 23707507 23712150 23045385 23050029 NC_060941.1 NC_000017.11 98.56 True local misassembly 23713343 23716302 23050030 23052990 NC_060941.1 NC_000017.11 98.82 True local misassembly 23717494 23719695 23052991 23055192 NC_060941.1 NC_000017.11 99.32 True local misassembly 23720888 23723448 23055193 23057753 NC_060941.1 NC_000017.11 99.1 True local misassembly 23724641 23726837 23057754 23059951 NC_060941.1 NC_000017.11 98.73 True local misassembly 23728030 23756830 23059952 23088756 NC_060941.1 NC_000017.11 98.25 True local misassembly 23758018 23766117 23088757 23096854 NC_060941.1 NC_000017.11 97.98 True indel: stretch of mismatches 23766444 23782928 23097181 23113670 NC_060941.1 NC_000017.11 98.05 True indel: stretch of mismatches 23783094 23862596 23113836 23192199 NC_060941.1 NC_000017.11 96.79 True indel: stretch of mismatches 23862762 23865314 23192365 23194918 NC_060941.1 NC_000017.11 98.2 True relocation, scaffold gap is present, inconsistency = 2144147 26798811 26799325 23984268 23984781 NC_060941.1 NC_000017.11 96.31 True relocation, inconsistency = -1056632 26795926 26796429 25038014 25038517 NC_060941.1 NC_000017.11 96.44 True relocation, inconsistency = -461324 26790493 26790996 25493905 25494408 NC_060941.1 NC_000017.11 96.43 True relocation, inconsistency = -110634 26790493 26790996 25604539 25605041 NC_060941.1 NC_000017.11 95.44 True relocation, scaffold gap is present, inconsistency = -230456 27522233 27525096 26566734 26569598 NC_060941.1 NC_000017.11 97.77 True fake: scaffold gap size wrong estimation (local) 27525294 27542296 26570015 26587013 NC_060941.1 NC_000017.11 98.18 True relocation, inconsistency = -15310 27527665 27532251 26587692 26592279 NC_060941.1 NC_000017.11 99.0 True fake: scaffold gap size wrong estimation (local) 27532440 27566153 26592687 26627010 NC_060941.1 NC_000017.11 96.8 True fake: scaffold gap size wrong estimation (local) 27567026 27579887 26627350 26640334 NC_060941.1 NC_000017.11 99.06 True fake: scaffold gap size wrong estimation (local) 27580203 27583047 26640621 26643465 NC_060941.1 NC_000017.11 100.0 True fake: scaffold gap size wrong estimation (local) 27583516 27638415 26643844 26698574 NC_060941.1 NC_000017.11 99.6 True fake: scaffold gap size wrong estimation (local) 27638640 27660401 26698999 26720420 NC_060941.1 NC_000017.11 96.75 True fake: scaffold gap size wrong estimation (local) 27661614 27758952 26721377 26820065 NC_060941.1 NC_000017.11 98.6 True fake: scaffold gap size wrong estimation (local) 27759080 27760609 26820271 26821801 NC_060941.1 NC_000017.11 99.8 True local misassembly 27761830 27783026 26821802 26842993 NC_060941.1 NC_000017.11 99.58 True local misassembly 27783027 27784741 26846589 26848278 NC_060941.1 NC_000017.11 98.25 True local misassembly 27785908 27795164 26848279 26857550 NC_060941.1 NC_000017.11 99.73 True local misassembly 27796117 27798290 26857551 26859724 NC_060941.1 NC_000017.11 99.82 True fake: scaffold gap size wrong estimation (local) 27798582 27801247 26860167 26862832 NC_060941.1 NC_000017.11 99.85 True local misassembly 27801248 27814400 26863563 26876740 NC_060941.1 NC_000017.11 99.45 True fake: scaffold gap size wrong estimation (local) 27814629 27817829 26876851 26880036 NC_060941.1 NC_000017.11 99.44 True fake: scaffold gap size wrong estimation (local) 27874648 31566528 26935990 30621872 NC_060941.1 NC_000017.11 99.7 True local misassembly 31570255 37341285 30625599 36393317 NC_060941.1 NC_000017.11 99.77 True relocation, inconsistency = 1535909 38877195 38906565 36422656 36393318 NC_060941.1 NC_000017.11 99.65 True relocation, inconsistency = -47207 37421107 38924396 36422662 37937416 NC_060941.1 NC_000017.11 98.45 True relocation, inconsistency = -14446 38909951 38963060 37990554 37937417 NC_060941.1 NC_000017.11 99.49 True relocation, inconsistency = 14449 38977510 38982874 37990555 37995900 NC_060941.1 NC_000017.11 99.66 True fake: not a misassembly (possible transposable element) 38982875 38984160 37997180 37995901 NC_060941.1 NC_000017.11 99.3 True fake: not a misassembly (possible transposable element) 38984161 42488596 37997181 41633279 NC_060941.1 NC_000017.11 96.0 True local misassembly 42489998 44092913 41633557 43237077 NC_060941.1 NC_000017.11 99.41 True relocation, inconsistency = -9914 44168320 52530818 43322398 51663208 NC_060941.1 NC_000017.11 99.49 True indel: indel (> 5bp) 52530917 66808266 51663291 65937660 NC_060941.1 NC_000017.11 99.63 True indel: indel (> 5bp) 66808417 68947818 65937794 68072047 NC_060941.1 NC_000017.11 99.27 True local misassembly 68949446 82659474 68072536 81742542 NC_060941.1 NC_000017.11 99.2 True relocation, scaffold gap is present, inconsistency = -49628 82659847 82663582 81792543 81796281 NC_060941.1 NC_000017.11 99.39 True fake: scaffold gap size wrong estimation (local) 82665003 82665980 81797728 81798705 NC_060941.1 NC_000017.11 100.0 True fake: scaffold gap size wrong estimation (local) 82666300 83925851 81799134 83048817 NC_060941.1 NC_000017.11 98.73 True relocation, inconsistency = 142584 84068436 84271047 83048818 83247136 NC_060941.1 NC_000017.11 97.36 True CONTIG NC_000017.11 83257441 misassembled 2127339 2308939 1 182663 NC_060939.1 NT_113930.2 97.77 True relocation, inconsistency = 18992 2327932 2330857 182664 185591 NC_060939.1 NT_113930.2 98.4 True CONTIG NT_113930.2 185591 misassembled 22215446 22216316 966 1839 NC_060941.1 NT_187384.1 98.05 True local misassembly 22217011 22218776 1840 3590 NC_060941.1 NT_187384.1 97.79 True local misassembly 22219262 22219846 3591 4155 NC_060941.1 NT_187384.1 96.24 True indel: stretch of mismatches 22220006 22220602 4315 4926 NC_060941.1 NT_187384.1 96.73 True local misassembly 22221542 22222365 5356 6169 NC_060941.1 NT_187384.1 96.84 True fake: scaffold gap size wrong estimation (extensive) 22234903 22238110 10484 13696 NC_060941.1 NT_187384.1 99.6 True fake: scaffold gap size wrong estimation (local) 22244095 22459090 20209 233473 NC_060941.1 NT_187384.1 96.61 True fake: scaffold gap size wrong estimation (local) 22460887 22506800 234892 280839 NC_060941.1 NT_187384.1 99.8 True CONTIG NT_187384.1 280839 correct 22424910 22514844 1 88661 NC_060941.1 NT_187385.1 98.26 True fake: scaffold gap size wrong estimation (local) 22515979 22517639 91817 93477 NC_060941.1 NT_187385.1 100.0 True fake: scaffold gap size wrong estimation (local) 22519273 22523837 95538 100113 NC_060941.1 NT_187385.1 99.43 True fake: scaffold gap size wrong estimation (local) 22524992 22530840 101924 107739 NC_060941.1 NT_187385.1 98.77 True fake: scaffold gap size wrong estimation (local) 22531173 22532580 107961 109363 NC_060941.1 NT_187385.1 99.5 True fake: scaffold gap size wrong estimation (local) 22533030 22536187 109389 112551 NC_060941.1 NT_187385.1 99.62 True CONTIG NT_187385.1 112551 correct 164102 12308247 10604 12145098 NC_060942.1 NC_000018.10 99.61 True fake: not a misassembly (possible transposable element) 12308642 12309602 12146113 12145153 NC_060942.1 NC_000018.10 99.9 True fake: not a misassembly (possible transposable element) 12309657 15572039 12146508 15410829 NC_060942.1 NC_000018.10 99.56 True fake: scaffold gap size wrong estimation (extensive) 15641312 15688706 15472124 15519517 NC_060942.1 NC_000018.10 97.32 True local misassembly 15688707 15702377 15521219 15534892 NC_060942.1 NC_000018.10 98.0 True fake: scaffold gap size wrong estimation (local) 15702549 15944529 15535359 15779971 NC_060942.1 NC_000018.10 95.41 True relocation, scaffold gap is present, inconsistency = 11495 15956531 15964432 15780478 15788380 NC_060942.1 NC_000018.10 99.92 True fake: scaffold gap size wrong estimation (local) 15968452 15973218 15791092 15795858 NC_060942.1 NC_000018.10 99.9 True local misassembly 15974067 15975362 15795859 15797154 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = 4742817 20718180 20720968 15797155 15800070 NC_060942.1 NC_000018.10 96.24 True relocation, inconsistency = -1054666 19674069 19678703 15807837 15812472 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = -2621697 17057494 17062519 15812960 15817987 NC_060942.1 NC_000018.10 97.57 True relocation, inconsistency = 3703855 20766678 20768130 15818291 15819744 NC_060942.1 NC_000018.10 97.55 True relocation, inconsistency = -4783904 15984227 15987458 15819745 15822978 NC_060942.1 NC_000018.10 97.43 True relocation, inconsistency = 738590 16726452 16731857 15823382 15828623 NC_060942.1 NC_000018.10 95.85 True relocation, inconsistency = 3023621 19755479 19762563 15828624 15835708 NC_060942.1 NC_000018.10 99.04 True relocation, inconsistency = -2968006 16794558 16798627 15835709 15839779 NC_060942.1 NC_000018.10 98.48 True relocation, inconsistency = 881718 17682330 17686874 15841764 15846309 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = 2039455 19726330 19727576 15846310 15847556 NC_060942.1 NC_000018.10 97.55 True relocation, inconsistency = -2468329 17259248 17268700 15847557 15857015 NC_060942.1 NC_000018.10 97.64 True relocation, inconsistency = 105150 17373892 17380103 15857057 15863272 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = 2340446 19720550 19724959 15863273 15867685 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = 89329 19814757 19825073 15868154 15878471 NC_060942.1 NC_000018.10 97.72 True relocation, inconsistency = 76745 19901819 19902502 15878472 15879156 NC_060942.1 NC_000018.10 98.08 True relocation, inconsistency = -2920117 16982486 16986270 15879257 15883043 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = -496138 16490683 16493023 15883594 15885935 NC_060942.1 NC_000018.10 98.08 True relocation, inconsistency = -150419 16342605 16343437 15885936 15886768 NC_060942.1 NC_000018.10 99.36 True relocation, inconsistency = 4452164 20796104 20797862 15887271 15889029 NC_060942.1 NC_000018.10 99.55 True indel: indel (> 5bp) 20797863 20798647 15889201 15889984 NC_060942.1 NC_000018.10 97.2 True relocation, inconsistency = -1098558 19702882 19704292 15892777 15894187 NC_060942.1 NC_000018.10 97.68 True relocation, inconsistency = -3602485 16101808 16107678 15894188 15900059 NC_060942.1 NC_000018.10 97.19 True relocation, inconsistency = 3376930 19484755 19492770 15900206 15908221 NC_060942.1 NC_000018.10 98.55 True relocation, inconsistency = -3423711 16069060 16069890 15908222 15909052 NC_060942.1 NC_000018.10 98.64 True relocation, inconsistency = 3712787 19782678 19787714 15909053 15914088 NC_060942.1 NC_000018.10 98.11 True translocation, scaffold gap is present 5328335 5328838 15914841 15914338 NC_060940.1 NC_000018.10 99.4 True translocation 19276739 19278354 15914852 15916471 NC_060942.1 NC_000018.10 98.71 True fake: not a misassembly (possible transposable element) 16580164 16581775 15916472 15918083 NC_060942.1 NC_000018.10 97.9 True fake: not a misassembly (possible transposable element) 19279800 19284647 15918084 15922930 NC_060942.1 NC_000018.10 98.89 True relocation, inconsistency = -128528 19156120 19157142 15922931 15923953 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = 1099470 20257339 20264059 15924680 15931397 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = -3408484 16855655 16860746 15931477 15936570 NC_060942.1 NC_000018.10 99.23 True local misassembly 16860747 16862948 15936909 15939110 NC_060942.1 NC_000018.10 98.86 True relocation, inconsistency = 2765518 19629329 19630818 15939973 15941463 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -1918056 17712763 17716664 15941464 15945366 NC_060942.1 NC_000018.10 99.43 True relocation, inconsistency = 1692163 19408828 19416962 15945367 15953503 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = 743581 20160544 20162954 15953504 15955918 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = -1452015 18710940 18716623 15955919 15961601 NC_060942.1 NC_000018.10 99.21 True relocation, inconsistency = 1296346 20013392 20017669 15962024 15966303 NC_060942.1 NC_000018.10 98.69 True relocation, inconsistency = 425806 20445290 20447424 15968118 15970252 NC_060942.1 NC_000018.10 98.08 True relocation, inconsistency = -3363144 17084445 17088528 15970417 15974502 NC_060942.1 NC_000018.10 98.97 True relocation, inconsistency = 3236052 20324581 20326218 15974503 15976141 NC_060942.1 NC_000018.10 98.1 True relocation, inconsistency = -3802736 16523483 16531454 15976142 15984112 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = 617183 17148638 17151907 15984113 15987383 NC_060942.1 NC_000018.10 98.11 True indel: stretch of mismatches 17152261 17152979 15987737 15988455 NC_060942.1 NC_000018.10 96.39 True relocation, inconsistency = 122941 17275921 17279762 15988456 15992298 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = 158740 17438503 17445060 15992299 15998856 NC_060942.1 NC_000018.10 98.86 True relocation, inconsistency = 3266501 20711562 20715717 15998857 16003018 NC_060942.1 NC_000018.10 98.28 True relocation, inconsistency = -3225449 17490976 17495350 16003726 16008104 NC_060942.1 NC_000018.10 97.97 True relocation, inconsistency = 2169083 19665512 19668914 16009183 16012583 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = 147745 19816660 19820270 16012584 16016193 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = 488628 20309358 20311822 16016653 16019117 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = -2725774 17586049 17593343 16019118 16026411 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = -791685 16801659 16807442 16026412 16032195 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 3290511 20097954 20099294 16032196 16033536 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = -2886500 17213204 17216598 16033946 16037342 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = 2815790 20032389 20036513 16037343 16041469 NC_060942.1 NC_000018.10 98.74 True relocation, inconsistency = -2496639 17539875 17545542 16041470 16047136 NC_060942.1 NC_000018.10 99.22 True relocation, inconsistency = 3134834 20682202 20686150 16048962 16052912 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = -3169782 17516469 17522489 16053013 16059031 NC_060942.1 NC_000018.10 99.12 True relocation, inconsistency = -1334347 16188574 16190237 16059463 16061129 NC_060942.1 NC_000018.10 97.93 True relocation, inconsistency = -66778 16123460 16128013 16061130 16065686 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = 704066 16836330 16840002 16069937 16073613 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = 76283 16916362 16920688 16073690 16078020 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 310108 17230797 17234253 16078021 16081477 NC_060942.1 NC_000018.10 98.65 True relocation, inconsistency = 2868868 20103122 20107188 16081478 16085547 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = -4025105 16082084 16084418 16085548 16087884 NC_060942.1 NC_000018.10 98.14 True relocation, inconsistency = 1682765 17767184 17774632 16087885 16095333 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = 2150645 19925278 19926447 16095334 16096502 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = -1757453 18168995 18172918 16096503 16100425 NC_060942.1 NC_000018.10 99.08 True relocation, inconsistency = -672487 17500606 17506209 16100600 16106206 NC_060942.1 NC_000018.10 98.98 True relocation, inconsistency = 3198303 20704513 20707217 16106207 16108911 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = -1072855 19634764 19636413 16109313 16110962 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = -40092 19596322 19601217 16110963 16115858 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 677135 20279091 20284629 16116597 16122135 NC_060942.1 NC_000018.10 97.62 True relocation, inconsistency = -457184 19827774 19829771 16122464 16124462 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -2666545 17163227 17167003 16124463 16128241 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = -246500 16920504 16923035 16128242 16130774 NC_060942.1 NC_000018.10 98.88 True relocation, inconsistency = 107139 17030175 17035969 16130775 16136576 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = 1644719 18680689 18684521 16136577 16140411 NC_060942.1 NC_000018.10 99.09 True relocation, inconsistency = 1140664 19825186 19829230 16140412 16144458 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = -3351725 16477506 16478946 16144459 16145898 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = 907362 17386534 17392246 16146124 16151838 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = -412572 16979675 16980636 16151839 16152800 NC_060942.1 NC_000018.10 99.32 True local misassembly 16980979 16982786 16152801 16154607 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = 2645177 19627964 19630651 16154608 16157295 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = -3045019 16585633 16592026 16157296 16163690 NC_060942.1 NC_000018.10 99.22 True relocation, inconsistency = 1154099 17746202 17751940 16163767 16169507 NC_060942.1 NC_000018.10 98.55 True relocation, inconsistency = 794142 18546083 18549169 16169508 16172594 NC_060942.1 NC_000018.10 99.05 True relocation, inconsistency = -518357 18030813 18035035 16172595 16176816 NC_060942.1 NC_000018.10 99.23 True relocation, inconsistency = 711674 18746710 18748625 16176817 16178733 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 1070786 19819412 19824739 16178734 16184061 NC_060942.1 NC_000018.10 99.01 True fake: not a misassembly (possible transposable element) 18017208 18022602 16185111 16190503 NC_060942.1 NC_000018.10 99.41 True fake: not a misassembly (possible transposable element) 19838313 19839004 16190654 16191345 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = 92398 19931793 19937517 16191736 16197461 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = 569538 20507108 20507734 16197514 16198140 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = -754688 19753047 19757806 16198141 16202902 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = 328248 20086055 20086788 16202903 16203636 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = -4075895 16010894 16013603 16203637 16206349 NC_060942.1 NC_000018.10 97.6 True relocation, inconsistency = 785919 16801104 16807442 16207931 16214271 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 3742773 20550320 20554971 16214376 16219028 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = -86305 20469070 20473753 16219432 16224116 NC_060942.1 NC_000018.10 98.19 True relocation, inconsistency = -3585600 16888154 16888827 16224117 16224790 NC_060942.1 NC_000018.10 99.29 True relocation, inconsistency = 3984797 20874113 20875477 16225279 16226644 NC_060942.1 NC_000018.10 99.85 True relocation, inconsistency = -4445528 16430321 16436273 16227016 16232971 NC_060942.1 NC_000018.10 98.69 True relocation, inconsistency = 3005951 19442571 19443514 16233318 16234261 NC_060942.1 NC_000018.10 99.89 True local misassembly 19443857 19448787 16234262 16239193 NC_060942.1 NC_000018.10 99.35 True relocation, inconsistency = -2987641 16461147 16462266 16239194 16240313 NC_060942.1 NC_000018.10 98.88 True relocation, inconsistency = 3875644 20337911 20343577 16240314 16245983 NC_060942.1 NC_000018.10 98.91 True translocation, scaffold gap is present 5328335 5328838 16246736 16246233 NC_060940.1 NC_000018.10 99.4 True translocation 20353164 20357496 16246921 16251253 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -3910609 16446888 16449871 16251254 16254237 NC_060942.1 NC_000018.10 99.14 True local misassembly 16449872 16452046 16254918 16257091 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = 572439 17024486 17029353 16257092 16261967 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 3390543 20419897 20421137 16261968 16263208 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = -3979946 16441192 16449028 16263209 16271047 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = 1205309 17655672 17658346 16272382 16275057 NC_060942.1 NC_000018.10 99.3 True relocation, inconsistency = 618070 18276417 18280553 16275058 16279194 NC_060942.1 NC_000018.10 98.89 True relocation, inconsistency = 897712 19178266 19180233 16279195 16281162 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = -1164381 18015853 18024831 16281163 16290140 NC_060942.1 NC_000018.10 98.65 True relocation, inconsistency = -1377949 16646883 16650908 16290141 16294168 NC_060942.1 NC_000018.10 98.69 True local misassembly 16651417 16653193 16294169 16295950 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = -154692 16502905 16507791 16300354 16305242 NC_060942.1 NC_000018.10 98.61 True local misassembly 16508134 16512671 16305243 16309781 NC_060942.1 NC_000018.10 98.24 True local misassembly 16512672 16514485 16310121 16311934 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -121384 16393102 16394800 16311935 16313633 NC_060942.1 NC_000018.10 97.94 True relocation, inconsistency = -378773 16016028 16023385 16313634 16320993 NC_060942.1 NC_000018.10 97.88 True relocation, inconsistency = 4060971 20084357 20086888 16320994 16323526 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = -2397909 17689144 17690902 16323691 16325450 NC_060942.1 NC_000018.10 98.73 True relocation, inconsistency = -1696968 15993935 15996650 16325451 16328166 NC_060942.1 NC_000018.10 96.34 True relocation, inconsistency = 3771409 19768060 19773265 16328167 16333376 NC_060942.1 NC_000018.10 97.91 True relocation, inconsistency = -3317715 16455551 16459452 16333377 16337278 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = 3515464 19974917 19976985 16337279 16339348 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = -3427618 16549368 16561544 16339349 16351524 NC_060942.1 NC_000018.10 98.14 True relocation, inconsistency = 1413894 17975439 17979238 16351525 16355324 NC_060942.1 NC_000018.10 99.2 True relocation, inconsistency = 739504 18718743 18720440 16355325 16357022 NC_060942.1 NC_000018.10 99.14 True relocation, inconsistency = -1976355 16744086 16751371 16357023 16364309 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = -173335 16578037 16581867 16364310 16368142 NC_060942.1 NC_000018.10 98.0 True fake: not a misassembly (possible transposable element) 16028800 16031736 16368143 16371080 NC_060942.1 NC_000018.10 98.58 True fake: not a misassembly (possible transposable element) 16585140 16588480 16371081 16374421 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = 1463471 18051952 18057695 16374422 16380163 NC_060942.1 NC_000018.10 99.36 True local misassembly 18053624 18055907 16380164 16382449 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = -1518740 16537168 16549393 16382450 16394678 NC_060942.1 NC_000018.10 98.48 True relocation, inconsistency = 3739904 20289968 20292849 16395349 16398232 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = -1322683 18970167 18972725 16398233 16400792 NC_060942.1 NC_000018.10 99.4 True relocation, inconsistency = 913547 19886273 19892133 16400793 16406653 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = -3391496 16500638 16507571 16406654 16413760 NC_060942.1 NC_000018.10 95.61 True relocation, inconsistency = 2827919 19335491 19341427 16413761 16419697 NC_060942.1 NC_000018.10 99.24 True relocation, inconsistency = -2859111 16482317 16486184 16419698 16423566 NC_060942.1 NC_000018.10 99.14 True local misassembly 16486185 16487013 16423909 16424736 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = 1545185 18032199 18038021 16424737 16430557 NC_060942.1 NC_000018.10 99.02 True translocation, scaffold gap is present 5328335 5328838 16432360 16431857 NC_060940.1 NC_000018.10 99.4 True translocation 20760108 20760881 16432409 16433184 NC_060942.1 NC_000018.10 98.45 True indel: indel (> 5bp) 20761052 20762200 16433185 16434333 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = -697069 20065760 20072796 16434962 16441998 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = -3486517 16586280 16591540 16441999 16447264 NC_060942.1 NC_000018.10 98.23 True relocation, inconsistency = 3106690 19698335 19700879 16447369 16449913 NC_060942.1 NC_000018.10 98.82 True relocation, inconsistency = -110242 19590638 19592296 16449914 16451572 NC_060942.1 NC_000018.10 98.18 True relocation, inconsistency = 550606 20142903 20147700 16451573 16456371 NC_060942.1 NC_000018.10 98.65 True relocation, inconsistency = -3484979 16662722 16669397 16456372 16463060 NC_060942.1 NC_000018.10 98.18 True relocation, inconsistency = -46810 16622588 16624348 16463061 16464822 NC_060942.1 NC_000018.10 98.45 True local misassembly 16624349 16628765 16465837 16470252 NC_060942.1 NC_000018.10 98.19 True relocation, inconsistency = 707597 17336363 17339502 16470253 16473393 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = -836840 16502663 16506462 16473394 16477198 NC_060942.1 NC_000018.10 98.98 True relocation, inconsistency = 2193440 18699903 18705764 16477199 16483060 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = -2049608 16656157 16657272 16483061 16484176 NC_060942.1 NC_000018.10 98.19 True relocation, inconsistency = 44778 16702051 16708021 16484177 16490149 NC_060942.1 NC_000018.10 98.81 True local misassembly 16708364 16709727 16490150 16491512 NC_060942.1 NC_000018.10 99.36 True relocation, inconsistency = -152295 16557433 16562902 16491513 16496983 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = 2357027 18920467 18923873 16497521 16500928 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = -870344 18053530 18057836 16500929 16505236 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = -1325410 16732427 16738875 16505237 16511690 NC_060942.1 NC_000018.10 98.81 True local misassembly 16738876 16739831 16512366 16513321 NC_060942.1 NC_000018.10 99.79 True relocation, inconsistency = 3522119 20271615 20275979 16522986 16527350 NC_060942.1 NC_000018.10 98.86 True relocation, inconsistency = -3577057 16699580 16709215 16528008 16537644 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = 2945809 19655307 19658300 16537927 16540922 NC_060942.1 NC_000018.10 98.97 True relocation, inconsistency = -3284971 16374054 16375412 16541647 16543004 NC_060942.1 NC_000018.10 98.64 True relocation, inconsistency = 4259472 20634885 20639227 16543005 16547349 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = -3595810 17043806 17047247 16547738 16551180 NC_060942.1 NC_000018.10 98.11 True relocation, inconsistency = 3062356 20109938 20114253 16551515 16555831 NC_060942.1 NC_000018.10 99.14 True relocation, inconsistency = -790619 19324217 19326428 16556414 16558625 NC_060942.1 NC_000018.10 99.24 True relocation, inconsistency = -2533841 16792588 16800662 16558626 16566703 NC_060942.1 NC_000018.10 98.91 True relocation, inconsistency = 3542915 20343578 20344538 16566704 16567664 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -2837382 17507157 17513239 16567665 16573754 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = 1125312 18638552 18640869 16573755 16576072 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = -1633868 17007002 17012033 16576073 16581106 NC_060942.1 NC_000018.10 98.61 True relocation, inconsistency = 1515172 18527206 18531745 16581107 16585647 NC_060942.1 NC_000018.10 99.09 True local misassembly 18532088 18532875 16585648 16586435 NC_060942.1 NC_000018.10 97.41 True relocation, inconsistency = -790412 17742464 17748172 16586436 16592145 NC_060942.1 NC_000018.10 98.65 True relocation, inconsistency = 2517607 20265780 20266858 16592146 16593224 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = -2242167 18024692 18028101 16593225 16596636 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 527848 18555950 18560059 16596637 16600748 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = -385337 18174723 18182174 16600749 16608197 NC_060942.1 NC_000018.10 99.3 True relocation, inconsistency = -1336990 16845185 16846490 16608198 16609503 NC_060942.1 NC_000018.10 99.4 True local misassembly 16846491 16852212 16609841 16615560 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = 3200861 20053074 20056134 16615561 16618624 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -579216 19477326 19481809 16619032 16623516 NC_060942.1 NC_000018.10 98.89 True relocation, inconsistency = 340696 19822506 19824501 16623517 16625512 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -803587 19020915 19027786 16625513 16632388 NC_060942.1 NC_000018.10 99.67 True relocation, inconsistency = -2338510 16689472 16692545 16632584 16635657 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 2644396 19336942 19340695 16635658 16639412 NC_060942.1 NC_000018.10 99.33 True relocation, inconsistency = -1922936 17417760 17419079 16639413 16640734 NC_060942.1 NC_000018.10 97.99 True relocation, inconsistency = 2554869 19973949 19981714 16640735 16648502 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = -2739391 17242729 17248365 16648908 16654545 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = 2962802 20211383 20213538 16654761 16656917 NC_060942.1 NC_000018.10 98.2 True relocation, inconsistency = -1854266 18359273 18364751 16656918 16662393 NC_060942.1 NC_000018.10 98.88 True relocation, inconsistency = 984489 19349241 19357507 16662394 16670662 NC_060942.1 NC_000018.10 99.24 True relocation, inconsistency = -1820502 17537166 17541795 16670823 16675451 NC_060942.1 NC_000018.10 99.01 True relocation, inconsistency = 1374553 18916431 18921590 16675534 16680696 NC_060942.1 NC_000018.10 99.23 True relocation, inconsistency = 1602596 20524187 20526763 16680697 16683273 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = -434240 20093602 20099286 16684352 16690036 NC_060942.1 NC_000018.10 98.82 True relocation, inconsistency = -178791 19920913 19922948 16690454 16692489 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 90764 20013713 20020173 16692490 16698948 NC_060942.1 NC_000018.10 98.55 True relocation, inconsistency = -2984482 17035692 17042732 16698949 16705989 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = -118332 16924739 16929481 16706328 16711071 NC_060942.1 NC_000018.10 97.83 True relocation, inconsistency = 3528295 20457777 20459558 16711072 16712852 NC_060942.1 NC_000018.10 97.66 True relocation, inconsistency = -3584559 16875000 16880462 16712853 16718316 NC_060942.1 NC_000018.10 98.9 True local misassembly 16880463 16887291 16718658 16725492 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = 513582 17400874 17403662 16725493 16728111 NC_060942.1 NC_000018.10 96.08 True relocation, inconsistency = -882601 16521062 16528915 16728112 16735966 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 3770799 20299715 20302302 16735967 16738554 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = -4120960 16181343 16183109 16738555 16740323 NC_060942.1 NC_000018.10 97.69 True relocation, inconsistency = 1067745 17250855 17255306 16740324 16744779 NC_060942.1 NC_000018.10 99.12 True relocation, inconsistency = 2944996 20200303 20201661 16744780 16746138 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = -3651545 16550117 16553303 16746139 16749325 NC_060942.1 NC_000018.10 98.59 True local misassembly 16553646 16555134 16749326 16750813 NC_060942.1 NC_000018.10 98.11 True relocation, inconsistency = 1586938 18142073 18147136 16750814 16755875 NC_060942.1 NC_000018.10 99.31 True relocation, inconsistency = 1390149 19537286 19538707 16755876 16757298 NC_060942.1 NC_000018.10 99.28 True relocation, inconsistency = 1239855 20778563 20779509 16757299 16758245 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -735945 20044629 20049676 16759310 16764356 NC_060942.1 NC_000018.10 98.55 True relocation, inconsistency = 160370 20210047 20212570 16764357 16766880 NC_060942.1 NC_000018.10 97.05 True relocation, inconsistency = -3797555 16415016 16417892 16766881 16769759 NC_060942.1 NC_000018.10 98.71 True relocation, scaffold gap is present, inconsistency = -70667 16347733 16348555 16770267 16771089 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = 2717352 19065974 19069990 16771156 16775172 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = 1561443 20631434 20633621 16775173 16777364 NC_060942.1 NC_000018.10 98.35 True relocation, inconsistency = -3660069 16973555 16982385 16777367 16786201 NC_060942.1 NC_000018.10 98.52 True relocation, inconsistency = 3552536 20534922 20537335 16786202 16788615 NC_060942.1 NC_000018.10 98.85 True relocation, inconsistency = -4155839 16381497 16387389 16788616 16794510 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = 116296 16503686 16505720 16794511 16796545 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = 535830 17041551 17049537 16796546 16804538 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = 900791 17950329 17951681 16804539 16805891 NC_060942.1 NC_000018.10 99.38 True relocation, inconsistency = 2045671 19997756 20001524 16806295 16810065 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = -2994627 17006898 17011883 16810066 16815052 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = 2693305 19705189 19708298 16815053 16818161 NC_060942.1 NC_000018.10 98.06 True relocation, inconsistency = -2546994 17161305 17165999 16818162 16822859 NC_060942.1 NC_000018.10 98.64 True relocation, inconsistency = 3173509 20339509 20343577 16822860 16826926 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = -889022 19454842 19458962 16827213 16831333 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 206821 19665784 19667826 16831334 16833377 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = -823669 18844527 18846673 16833747 16835893 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = -2387071 16459603 16467251 16835894 16843546 NC_060942.1 NC_000018.10 98.69 True relocation, inconsistency = -238142 16230231 16232837 16844668 16847274 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = 3871916 20104754 20105925 16847275 16848446 NC_060942.1 NC_000018.10 96.5 True relocation, inconsistency = 748174 20854850 20856638 16849197 16850986 NC_060942.1 NC_000018.10 98.9 True relocation, inconsistency = -3820018 17036621 17042076 16850987 16856442 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = 3617561 20659715 20665916 16856520 16862724 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = -432269 20233648 20235967 16862725 16865045 NC_060942.1 NC_000018.10 97.39 True relocation, inconsistency = -2840235 17395733 17399032 16865046 16868345 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = 2302090 19701176 19701793 16868399 16869016 NC_060942.1 NC_000018.10 98.22 True relocation, inconsistency = 764153 20466350 20471321 16869420 16874393 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = -3405216 17066106 17068178 16874394 16876468 NC_060942.1 NC_000018.10 98.16 True fake: scaffold gap size wrong estimation (local) 17068205 17068932 16876770 16877499 NC_060942.1 NC_000018.10 98.9 True local misassembly 17069270 17070597 16877500 16878827 NC_060942.1 NC_000018.10 99.32 True local misassembly 17070598 17072263 16879170 16880836 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = -26119 17047137 17050946 16881829 16885639 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = 2835313 19886260 19892826 16885640 16892207 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = -1581685 18311721 18319406 16892787 16900468 NC_060942.1 NC_000018.10 99.04 True relocation, inconsistency = 2126110 20445517 20447324 16900469 16902276 NC_060942.1 NC_000018.10 98.11 True relocation, inconsistency = -2770656 17676669 17679233 16902277 16904843 NC_060942.1 NC_000018.10 98.8 True relocation, inconsistency = 2066248 19745482 19749926 16904844 16909290 NC_060942.1 NC_000018.10 98.2 True relocation, inconsistency = -93726 19656669 19661020 16909759 16914110 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = -2504514 17162778 17163608 16920382 16921210 NC_060942.1 NC_000018.10 98.73 True relocation, inconsistency = -274797 16888812 16894931 16921211 16927332 NC_060942.1 NC_000018.10 99.15 True relocation, inconsistency = 110847 17005779 17007528 16927333 16929082 NC_060942.1 NC_000018.10 98.03 True relocation, inconsistency = 2623144 19630673 19635037 16929083 16933448 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = 549560 20184598 20185674 16933449 16934527 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = -889436 19296239 19301257 16934528 16939548 NC_060942.1 NC_000018.10 99.54 True relocation, inconsistency = -2088444 17213204 17214563 16939939 16941298 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = -27484 17187080 17193662 16941299 16947883 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -696042 16497621 16499489 16947884 16949752 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 553809 17053299 17056326 16949753 16952780 NC_060942.1 NC_000018.10 99.11 True relocation, inconsistency = -116655 16940104 16946038 16953213 16959149 NC_060942.1 NC_000018.10 98.82 True relocation, inconsistency = 3527300 20473339 20477488 16959150 16963301 NC_060942.1 NC_000018.10 97.95 True relocation, inconsistency = 277769 20755550 20759036 16963594 16967080 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -4496183 16263721 16264743 16967948 16968973 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = 1009866 17274610 17279336 16968974 16973700 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -905959 16373378 16378415 16973701 16978737 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 835414 17213830 17216915 16978738 16981823 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = -667548 16549368 16559194 16981824 16991651 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = 712304 17271732 17274260 16991885 16994412 NC_060942.1 NC_000018.10 96.44 True local misassembly 17274603 17275406 16994413 16995216 NC_060942.1 NC_000018.10 98.38 True local misassembly 17276082 17283014 16995217 17002156 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 2609986 19893001 19894430 17002157 17003586 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = -214640 19679791 19686502 17003587 17010298 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -3101249 16589702 16594814 17014747 17019857 NC_060942.1 NC_000018.10 99.24 True local misassembly 16595153 16596043 17019858 17020748 NC_060942.1 NC_000018.10 99.44 True fake: not a misassembly (possible transposable element) 20712730 20719002 17029025 17035301 NC_060942.1 NC_000018.10 98.73 True fake: not a misassembly (possible transposable element) 16610759 16611599 17035475 17036315 NC_060942.1 NC_000018.10 99.64 True relocation, inconsistency = 1115091 17734583 17740038 17044208 17049663 NC_060942.1 NC_000018.10 98.74 True relocation, inconsistency = 2602179 20342218 20343577 17049664 17051024 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = -1289532 19054248 19058269 17051227 17055246 NC_060942.1 NC_000018.10 98.11 True relocation, inconsistency = -1811554 17246716 17251083 17055247 17059614 NC_060942.1 NC_000018.10 98.95 True relocation, inconsistency = 44080 17300134 17300812 17064585 17065263 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = 1771017 19071830 19083493 17065264 17076921 NC_060942.1 NC_000018.10 98.89 True local misassembly 19083836 19084887 17076922 17077974 NC_060942.1 NC_000018.10 97.72 True local misassembly 19084983 19091632 17078754 17085405 NC_060942.1 NC_000018.10 98.14 True relocation, inconsistency = 1296762 20390889 20394898 17087900 17091906 NC_060942.1 NC_000018.10 98.43 True local misassembly 20398013 20399035 17092634 17093656 NC_060942.1 NC_000018.10 96.96 True relocation, inconsistency = -3776058 16622978 16627821 17093657 17098501 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = 3711147 20338969 20345278 17098502 17104983 NC_060942.1 NC_000018.10 95.73 True local misassembly 20339170 20343577 17104984 17109392 NC_060942.1 NC_000018.10 98.82 True relocation, inconsistency = 510377 20854850 20857396 17110288 17112834 NC_060942.1 NC_000018.10 98.23 True relocation, inconsistency = -1566767 19290630 19294814 17112835 17117020 NC_060942.1 NC_000018.10 97.83 True relocation, inconsistency = 1116413 20411621 20414622 17117414 17120417 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -767191 19649280 19651500 17122266 17124487 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = -2231452 17420439 17426828 17124878 17131270 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = 2173215 19600183 19601214 17131410 17132441 NC_060942.1 NC_000018.10 99.03 True indel: indel (> 5bp) 19601386 19602058 17132442 17133114 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = -2236120 17366108 17370191 17133284 17137369 NC_060942.1 NC_000018.10 98.26 True relocation, inconsistency = -1376641 15993551 15996198 17137370 17140017 NC_060942.1 NC_000018.10 96.56 True relocation, inconsistency = 3625519 19621718 19625587 17140018 17143887 NC_060942.1 NC_000018.10 98.18 True relocation, inconsistency = -486695 19138893 19143853 17143888 17148847 NC_060942.1 NC_000018.10 99.4 True relocation, inconsistency = -1892770 17251084 17253495 17148848 17151259 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = 3427203 20681119 20682463 17151680 17153026 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -3970268 16712196 16715685 17153027 17156516 NC_060942.1 NC_000018.10 99.31 True relocation, inconsistency = -560786 16154902 16157018 17156519 17158635 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = 2058382 18215401 18216587 17158636 17159822 NC_060942.1 NC_000018.10 99.02 True relocation, inconsistency = -1715193 16501395 16505668 17159823 17164098 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = 880234 17385903 17392246 17164099 17170443 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = -164841 17227686 17231471 17170724 17174516 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = 2797807 20029682 20031140 17174920 17176378 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = -2549193 17482748 17484220 17177179 17178652 NC_060942.1 NC_000018.10 98.13 True relocation, inconsistency = -25439 17458782 17462260 17178653 17182131 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = 1942786 19405047 19409808 17182132 17186893 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = -1998573 17412314 17417330 17187972 17192990 NC_060942.1 NC_000018.10 98.67 True relocation, inconsistency = 2408769 19826100 19827761 17192991 17194652 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = -1856768 17970994 17982221 17194653 17205877 NC_060942.1 NC_000018.10 99.12 True local misassembly 17999040 18002523 17222013 17225498 NC_060942.1 NC_000018.10 99.31 True local misassembly 18003340 18010670 17225631 17232957 NC_060942.1 NC_000018.10 98.17 True local misassembly 18011013 18012734 17232958 17234679 NC_060942.1 NC_000018.10 99.59 True local misassembly 18025027 18052400 17246981 17273666 NC_060942.1 NC_000018.10 96.49 True local misassembly 18076705 18078868 17296593 17298756 NC_060942.1 NC_000018.10 99.72 True local misassembly 18092135 18093117 17311170 17312152 NC_060942.1 NC_000018.10 99.49 True local misassembly 18104388 18115885 17323427 17334927 NC_060942.1 NC_000018.10 98.36 True local misassembly 18116561 18122077 17334928 17340448 NC_060942.1 NC_000018.10 99.58 True local misassembly 18131333 18135864 17349698 17354227 NC_060942.1 NC_000018.10 99.1 True local misassembly 18161859 18163354 17380072 17381566 NC_060942.1 NC_000018.10 99.33 True local misassembly 18170577 18178836 17388103 17396360 NC_060942.1 NC_000018.10 99.09 True local misassembly 18179175 18186475 17396361 17403659 NC_060942.1 NC_000018.10 98.75 True local misassembly 18186476 18187743 17404340 17405607 NC_060942.1 NC_000018.10 99.76 True local misassembly 18188604 18197048 17405784 17414224 NC_060942.1 NC_000018.10 98.43 True local misassembly 18197049 18198349 17414563 17415862 NC_060942.1 NC_000018.10 97.0 True indel: indel (> 5bp) 18198350 18204613 17416035 17422297 NC_060942.1 NC_000018.10 98.96 True local misassembly 18212326 18217707 17430009 17435389 NC_060942.1 NC_000018.10 99.33 True relocation, inconsistency = 1539416 19757124 19758198 17435390 17436464 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = -2079496 17678703 17686448 17436465 17444216 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = -1237172 16449872 16452025 17444812 17446965 NC_060942.1 NC_000018.10 98.98 True relocation, inconsistency = -388269 16063757 16069977 17446966 17453187 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = 4811923 20881901 20883448 17453188 17454735 NC_060942.1 NC_000018.10 97.75 True relocation, inconsistency = -2644716 18239263 18243748 17455266 17459751 NC_060942.1 NC_000018.10 99.44 True relocation, inconsistency = 661015 18904906 18906940 17459894 17461928 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = -1196346 17710595 17716890 17461929 17468226 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = -15603 17701474 17708831 17468413 17475774 NC_060942.1 NC_000018.10 98.26 True relocation, inconsistency = 2169220 19878535 19884967 17476258 17482688 NC_060942.1 NC_000018.10 98.67 True relocation, inconsistency = -1708194 18176774 18183622 17482689 17489533 NC_060942.1 NC_000018.10 98.86 True relocation, inconsistency = 2352508 20536131 20540020 17489534 17493426 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = -863858 19676653 19682432 17493917 17499696 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = -2242036 17440397 17442833 17499697 17502134 NC_060942.1 NC_000018.10 98.67 True relocation, inconsistency = 825477 18268311 18275306 17502135 17509131 NC_060942.1 NC_000018.10 99.57 True relocation, inconsistency = -1585930 16690679 16691948 17510434 17511703 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = 847297 17539246 17544999 17511704 17517457 NC_060942.1 NC_000018.10 98.56 True local misassembly 17545342 17546198 17517458 17518314 NC_060942.1 NC_000018.10 98.37 True local misassembly 17546874 17548912 17518315 17520353 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = 760186 18309941 18319463 17521196 17530714 NC_060942.1 NC_000018.10 98.55 True local misassembly 18320633 18321313 17532050 17532729 NC_060942.1 NC_000018.10 97.8 True local misassembly 18321314 18324991 17533073 17536748 NC_060942.1 NC_000018.10 98.99 True local misassembly 18350074 18354079 17561817 17565824 NC_060942.1 NC_000018.10 99.13 True local misassembly 18355844 18359301 17567588 17571044 NC_060942.1 NC_000018.10 99.57 True fake: not a misassembly (possible transposable element) 16027096 16032858 17579561 17585328 NC_060942.1 NC_000018.10 98.72 True fake: not a misassembly (possible transposable element) 18378575 18380524 17590509 17592459 NC_060942.1 NC_000018.10 99.03 True local misassembly 18382982 18387323 17594927 17599266 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = -762908 17625140 17628854 17599991 17603705 NC_060942.1 NC_000018.10 98.91 True fake: not a misassembly (possible transposable element) 19336233 19341227 17603706 17608701 NC_060942.1 NC_000018.10 99.54 True fake: not a misassembly (possible transposable element) 17639403 17646363 17612556 17619520 NC_060942.1 NC_000018.10 98.87 True local misassembly 17646364 17651852 17620880 17626368 NC_060942.1 NC_000018.10 98.94 True local misassembly 17651853 17654490 17627044 17629682 NC_060942.1 NC_000018.10 98.48 True local misassembly 17655166 17661274 17629683 17635796 NC_060942.1 NC_000018.10 98.61 True local misassembly 17661950 17664736 17635797 17638583 NC_060942.1 NC_000018.10 98.56 True local misassembly 17664832 17666735 17639363 17641267 NC_060942.1 NC_000018.10 97.74 True local misassembly 17667412 17672108 17641268 17645965 NC_060942.1 NC_000018.10 98.81 True local misassembly 17672451 17673632 17645966 17647147 NC_060942.1 NC_000018.10 97.97 True relocation, inconsistency = 563134 18247836 18266547 17658217 17676935 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = 1745756 20012836 20017058 17677468 17681691 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = -2069956 17962343 17964238 17696932 17698826 NC_060942.1 NC_000018.10 98.31 True local misassembly 17967023 17975438 17701262 17709674 NC_060942.1 NC_000018.10 98.88 True local misassembly 17977096 17981547 17711334 17715784 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = -847937 17133764 17135622 17715938 17717796 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = 3346260 20481883 20483621 17717797 17719535 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -2716438 17767184 17777683 17719536 17730035 NC_060942.1 NC_000018.10 98.07 True relocation, inconsistency = 2544357 20322600 20324984 17730595 17732979 NC_060942.1 NC_000018.10 98.23 True relocation, inconsistency = -495087 19829898 19835609 17732980 17738693 NC_060942.1 NC_000018.10 97.86 True relocation, inconsistency = -1815380 18020230 18022141 17738694 17740606 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = -101113 17921029 17925642 17740607 17745220 NC_060942.1 NC_000018.10 98.14 True relocation, inconsistency = 623886 18549529 18551879 17745221 17747571 NC_060942.1 NC_000018.10 99.02 True relocation, inconsistency = 1726548 20278428 20282876 17747572 17752022 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = -2501366 17782480 17785902 17752992 17756413 NC_060942.1 NC_000018.10 97.81 True local misassembly 17786245 17788771 17756414 17758937 NC_060942.1 NC_000018.10 96.87 True local misassembly 17788772 17794306 17759614 17765156 NC_060942.1 NC_000018.10 98.23 True relocation, inconsistency = 1778247 19573385 19579275 17765988 17771878 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = 343223 19922499 19925087 17771879 17774485 NC_060942.1 NC_000018.10 97.42 True relocation, inconsistency = -3217878 16707210 16710860 17774486 17778137 NC_060942.1 NC_000018.10 99.12 True relocation, inconsistency = 4063970 20774831 20776102 17778138 17779409 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = -3025735 17750464 17753601 17779506 17782643 NC_060942.1 NC_000018.10 99.14 True relocation, inconsistency = -1378746 16375091 16379767 17782879 17787557 NC_060942.1 NC_000018.10 98.97 True relocation, inconsistency = 3025296 19405064 19408164 17787558 17790659 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = -2188179 17219986 17227499 17790660 17798174 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -726923 16500577 16505467 17798175 17803066 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = -524874 15980797 15982078 17803270 17804550 NC_060942.1 NC_000018.10 96.67 True relocation, inconsistency = 20658 16002737 16003733 17804551 17805547 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = 1711219 17714953 17721361 17805548 17811957 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = -556741 17164621 17169051 17811958 17816394 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = 914969 18094479 18095920 17826853 17828294 NC_060942.1 NC_000018.10 99.07 True fake: not a misassembly (possible transposable element) 19225332 19231887 17828295 17834854 NC_060942.1 NC_000018.10 98.87 True fake: not a misassembly (possible transposable element) 18119573 18121607 17848061 17850095 NC_060942.1 NC_000018.10 99.61 True fake: not a misassembly (possible transposable element) 16004310 16011014 17886195 17892902 NC_060942.1 NC_000018.10 98.54 True fake: not a misassembly (possible transposable element) 18165931 18177638 17894223 17905585 NC_060942.1 NC_000018.10 95.86 True relocation, inconsistency = -2034791 16160181 16166367 17922919 17929106 NC_060942.1 NC_000018.10 97.96 True relocation, inconsistency = 1649898 17818321 17822847 17931162 17935689 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 1881725 19704573 19709770 17935690 17940886 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = -939713 18770058 18770923 17940887 17941752 NC_060942.1 NC_000018.10 99.59 True relocation, inconsistency = -947104 17823820 17828232 17941753 17946168 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = -1249393 16578902 16581820 17946231 17949150 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = 1641593 18223689 18226216 17949426 17951953 NC_060942.1 NC_000018.10 99.44 True relocation, inconsistency = 1365371 19591588 19596891 17951954 17957258 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -3326559 16270333 16271857 17957259 17958783 NC_060942.1 NC_000018.10 98.4 True relocation, inconsistency = -163309 16108549 16112817 17958784 17963053 NC_060942.1 NC_000018.10 98.22 True relocation, inconsistency = 2101438 18214256 18216075 17963054 17964873 NC_060942.1 NC_000018.10 99.3 True relocation, inconsistency = 1523809 19739885 19742764 17964874 17967754 NC_060942.1 NC_000018.10 97.92 True local misassembly 19742765 19743426 17968097 17968756 NC_060942.1 NC_000018.10 97.43 True relocation, inconsistency = -2975107 16768504 16772847 17968941 17973285 NC_060942.1 NC_000018.10 98.8 True relocation, inconsistency = 2784102 19556950 19559132 17973286 17975468 NC_060942.1 NC_000018.10 99.4 True relocation, inconsistency = 15268 19574993 19579334 17976061 17980401 NC_060942.1 NC_000018.10 99.08 True relocation, inconsistency = -1549767 18030138 18035129 17980972 17985964 NC_060942.1 NC_000018.10 98.64 True fake: not a misassembly (possible transposable element) 20132043 20137734 17987776 17993465 NC_060942.1 NC_000018.10 98.37 True fake: not a misassembly (possible transposable element) 18054442 18059905 18005617 18011079 NC_060942.1 NC_000018.10 99.52 True local misassembly 18059906 18061566 18011422 18013081 NC_060942.1 NC_000018.10 99.22 True local misassembly 18062969 18067199 18013628 18017856 NC_060942.1 NC_000018.10 99.27 True local misassembly 18067200 18067914 18018194 18018908 NC_060942.1 NC_000018.10 99.72 True local misassembly 18068257 18069069 18018909 18019720 NC_060942.1 NC_000018.10 99.26 True indel: indel (> 5bp) 18069070 18076821 18019888 18027637 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = 761323 18838373 18842776 18027866 18032270 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = 799369 19643241 19648953 18033366 18039078 NC_060942.1 NC_000018.10 97.45 True relocation, inconsistency = -3656077 15993267 15996072 18039469 18042276 NC_060942.1 NC_000018.10 96.9 True local misassembly 15996581 15997353 18042277 18043049 NC_060942.1 NC_000018.10 97.45 True relocation, inconsistency = 260275 16257629 16260604 18043050 18046024 NC_060942.1 NC_000018.10 98.45 True relocation, inconsistency = 772314 17036375 17038681 18049481 18051786 NC_060942.1 NC_000018.10 97.92 True relocation, inconsistency = -978004 16063103 16064307 18054212 18055418 NC_060942.1 NC_000018.10 98.59 True local misassembly 16064649 16067436 18055419 18058207 NC_060942.1 NC_000018.10 99.21 True relocation, inconsistency = 1345804 17415419 17419988 18060386 18064956 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = 336268 17756257 17762646 18064957 18071346 NC_060942.1 NC_000018.10 98.7 True local misassembly 17762647 17767111 18071852 18076317 NC_060942.1 NC_000018.10 99.19 True relocation, inconsistency = 582840 18349966 18354079 18076332 18080443 NC_060942.1 NC_000018.10 98.98 True relocation, inconsistency = 539563 18896753 18906603 18083554 18093067 NC_060942.1 NC_000018.10 95.54 True relocation, inconsistency = 934512 19841327 19845395 18093279 18097347 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = -2054542 17793782 17795478 18100276 18101972 NC_060942.1 NC_000018.10 99.59 True local misassembly 17795987 17796683 18101973 18102669 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = -1247346 16562833 16569900 18116165 18123236 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = 3911889 20481846 20486981 18123293 18128428 NC_060942.1 NC_000018.10 96.9 True relocation, inconsistency = -782487 19704603 19709702 18128537 18133632 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -2434392 17275311 17278774 18133633 18137096 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = -138540 17140385 17144107 18137247 18140973 NC_060942.1 NC_000018.10 97.67 True relocation, inconsistency = -937379 16206729 16208199 18140974 18142440 NC_060942.1 NC_000018.10 97.12 True relocation, inconsistency = 318488 16526688 16531780 18142441 18147533 NC_060942.1 NC_000018.10 98.25 True relocation, inconsistency = 137036 16668817 16671481 18147534 18150202 NC_060942.1 NC_000018.10 98.56 True relocation, inconsistency = 663843 17335325 17340182 18150203 18155063 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = 1510399 18851374 18854997 18155856 18159479 NC_060942.1 NC_000018.10 98.87 True relocation, inconsistency = -656972 18198401 18207191 18159855 18168640 NC_060942.1 NC_000018.10 99.12 True relocation, inconsistency = 2162894 20370138 20374157 18168693 18172712 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -3395165 16978993 16980350 18172713 18174071 NC_060942.1 NC_000018.10 99.32 True relocation, inconsistency = 3798483 20779111 20779660 18174349 18174898 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = -4404321 16375340 16376884 18174899 18176444 NC_060942.1 NC_000018.10 99.55 True relocation, inconsistency = -391627 15985258 15986101 18176445 18177289 NC_060942.1 NC_000018.10 96.98 True fake: not a misassembly (possible transposable element) 20872048 20873450 18177589 18178991 NC_060942.1 NC_000018.10 98.72 True fake: not a misassembly (possible transposable element) 15992640 15995862 18180114 18183340 NC_060942.1 NC_000018.10 96.34 True local misassembly 16001286 16007356 18183341 18189416 NC_060942.1 NC_000018.10 97.43 True fake: not a misassembly (possible transposable element) 20811876 20812769 18189664 18190558 NC_060942.1 NC_000018.10 97.96 True fake: not a misassembly (possible transposable element) 16008164 16012518 18190559 18194916 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = 850524 16864325 16866115 18196199 18197989 NC_060942.1 NC_000018.10 97.93 True relocation, inconsistency = 3796251 20664821 20667794 18200444 18203419 NC_060942.1 NC_000018.10 98.92 True relocation, inconsistency = -1637827 19033266 19046062 18206718 18219345 NC_060942.1 NC_000018.10 97.81 True relocation, inconsistency = -1787478 17258585 17260634 18219346 18221395 NC_060942.1 NC_000018.10 99.22 True relocation, inconsistency = -461674 16799115 16804047 18221550 18226311 NC_060942.1 NC_000018.10 95.76 True relocation, inconsistency = 445913 17252777 17254201 18229128 18230553 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = -1248098 16006104 16011178 18230554 18235633 NC_060942.1 NC_000018.10 97.8 True relocation, inconsistency = 1080062 17091241 17094378 18235634 18238771 NC_060942.1 NC_000018.10 99.19 True relocation, inconsistency = -1091593 16003433 16007110 18239419 18243098 NC_060942.1 NC_000018.10 97.83 True relocation, inconsistency = 496764 16504318 16507677 18243542 18246906 NC_060942.1 NC_000018.10 98.18 True relocation, inconsistency = 2011314 18518992 18525695 18246907 18253614 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = -1024246 17501450 17502621 18253615 18254786 NC_060942.1 NC_000018.10 99.26 True relocation, inconsistency = 435305 17937927 17943976 18254787 18260834 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 2575753 20521054 20522683 18262159 18263789 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = -867429 19658029 19661020 18266564 18269555 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -1838233 17823541 17830784 18270309 18277553 NC_060942.1 NC_000018.10 99.34 True relocation, inconsistency = 1270931 19101716 19104339 18277554 18280177 NC_060942.1 NC_000018.10 99.08 True relocation, inconsistency = -2059452 17044888 17046126 18280178 18281416 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = -913945 16132530 16135145 18281765 18284381 NC_060942.1 NC_000018.10 98.01 True relocation, inconsistency = 2774342 18909488 18913594 18284382 18288492 NC_060942.1 NC_000018.10 98.56 True relocation, inconsistency = -1460027 17453568 17459053 18288493 18293977 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = 559140 18018194 18020229 18293978 18296013 NC_060942.1 NC_000018.10 98.85 True relocation, inconsistency = -40044 17980252 17989756 18296080 18305582 NC_060942.1 NC_000018.10 99.01 True relocation, inconsistency = 2584842 20590365 20595902 18321349 18326885 NC_060942.1 NC_000018.10 98.45 True relocation, inconsistency = -2249474 18349144 18361690 18329601 18341801 NC_060942.1 NC_000018.10 96.06 True relocation, inconsistency = 1380476 19746311 19750567 18345946 18350202 NC_060942.1 NC_000018.10 97.77 True relocation, inconsistency = -1706695 18060644 18069159 18366974 18375487 NC_060942.1 NC_000018.10 99.1 True relocation, inconsistency = 325695 18394855 18395463 18375488 18376096 NC_060942.1 NC_000018.10 99.0 True relocation, inconsistency = -2396489 15999378 16000356 18376500 18377478 NC_060942.1 NC_000018.10 98.21 True local misassembly 16002737 16007356 18377479 18382098 NC_060942.1 NC_000018.10 98.44 True local misassembly 16007529 16013212 18382608 18388293 NC_060942.1 NC_000018.10 98.01 True relocation, inconsistency = -13396 16007264 16013212 18395741 18401692 NC_060942.1 NC_000018.10 98.49 True relocation, inconsistency = 126796 16158344 16159944 18420028 18421628 NC_060942.1 NC_000018.10 99.25 True relocation, inconsistency = 1955226 18117057 18125154 18423515 18431611 NC_060942.1 NC_000018.10 98.91 True relocation, inconsistency = -2130497 15994658 15996319 18431612 18433278 NC_060942.1 NC_000018.10 95.82 True relocation, inconsistency = 456071 16452391 16457076 18433279 18437965 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = 4367535 20829069 20832563 18442423 18445919 NC_060942.1 NC_000018.10 98.2 True local misassembly 20833244 20833873 18446091 18446720 NC_060942.1 NC_000018.10 96.9 True relocation, inconsistency = -4667658 16166216 16170795 18446721 18451301 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 4115321 20286117 20289486 18451302 18454675 NC_060942.1 NC_000018.10 98.19 True relocation, inconsistency = -2647868 17641619 17646280 18454676 18459338 NC_060942.1 NC_000018.10 99.19 True relocation, inconsistency = -1370599 16276223 16277279 18459880 18460936 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = -143648 16133632 16137965 18460937 18465271 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = 3459698 19598056 19599033 18465664 18466641 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = -3596658 16002376 16010077 18466642 18474346 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = 4737984 20748891 20750225 18475176 18476512 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = -2812576 17937650 17941136 18476513 18479999 NC_060942.1 NC_000018.10 98.74 True relocation, inconsistency = -758542 17182598 17185550 18480003 18482955 NC_060942.1 NC_000018.10 98.95 True indel: indel (> 5bp) 17185551 17186590 18483127 18484167 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = 2699009 19886260 19890957 18484828 18489525 NC_060942.1 NC_000018.10 97.91 True relocation, inconsistency = -1226548 18664410 18667119 18489526 18492235 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -2434619 16232986 16233615 18492721 18493351 NC_060942.1 NC_000018.10 98.48 True relocation, inconsistency = 3575624 19809240 19812796 18493352 18496910 NC_060942.1 NC_000018.10 98.09 True relocation, inconsistency = 867169 20679966 20681390 18496911 18498336 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = -3424827 17257213 17262495 18498986 18504266 NC_060942.1 NC_000018.10 98.37 True relocation, scaffold gap is present, inconsistency = 3026307 20291339 20292970 18506803 18508436 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = -3804017 16489869 16490988 18509352 18510470 NC_060942.1 NC_000018.10 98.21 True relocation, inconsistency = -210743 16280692 16282826 18510917 18513051 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = -156863 16125964 16128229 18513052 18515318 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = 2398586 18526816 18537590 18515319 18526433 NC_060942.1 NC_000018.10 95.41 True relocation, inconsistency = -2561108 15978477 15980458 18528428 18530409 NC_060942.1 NC_000018.10 99.64 True relocation, inconsistency = 4042470 20022929 20028593 18530410 18536074 NC_060942.1 NC_000018.10 98.73 True relocation, inconsistency = -451969 19576625 19577299 18536075 18536749 NC_060942.1 NC_000018.10 99.19 True relocation, inconsistency = 463544 20043269 20044663 18539175 18540569 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -1482589 18562075 18568013 18540570 18546512 NC_060942.1 NC_000018.10 98.81 True local misassembly 18569287 18576570 18547111 18554392 NC_060942.1 NC_000018.10 98.52 True relocation, inconsistency = -1831865 16744706 16751042 18554393 18560732 NC_060942.1 NC_000018.10 98.81 True relocation, inconsistency = 882427 17633470 17641707 18560733 18568971 NC_060942.1 NC_000018.10 97.83 True relocation, inconsistency = -1648157 15993551 15995770 18568972 18571193 NC_060942.1 NC_000018.10 96.52 True relocation, inconsistency = 4501275 20497264 20498895 18571412 18573043 NC_060942.1 NC_000018.10 99.02 True relocation, inconsistency = -4107587 16391542 16397739 18573277 18579478 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 4492485 20895125 20897183 18584379 18586438 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = -3236493 17664139 17665027 18589887 18590775 NC_060942.1 NC_000018.10 99.16 True relocation, inconsistency = -418362 17246666 17251139 18590776 18595252 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 349858 17600998 17605067 18595253 18599322 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = -502304 17102764 17104610 18599323 18601169 NC_060942.1 NC_000018.10 99.67 True relocation, inconsistency = -336188 16768423 16770627 18601170 18603375 NC_060942.1 NC_000018.10 99.73 True relocation, inconsistency = 2995668 19766679 19770037 18603759 18607120 NC_060942.1 NC_000018.10 97.38 True relocation, inconsistency = 958933 20729373 20732187 18607523 18610340 NC_060942.1 NC_000018.10 97.98 True relocation, inconsistency = -4715417 16016771 16019242 18610341 18612815 NC_060942.1 NC_000018.10 98.19 True local misassembly 16019585 16021093 18612816 18614325 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = 4451045 20472139 20476666 18614326 18618854 NC_060942.1 NC_000018.10 98.1 True relocation, inconsistency = -3414715 17062509 17067280 18619412 18624183 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 1867497 18934778 18941778 18624184 18631187 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = -2753328 16188451 16189800 18631188 18632537 NC_060942.1 NC_000018.10 97.22 True relocation, inconsistency = -181354 16008447 16013186 18632538 18637280 NC_060942.1 NC_000018.10 97.48 True relocation, inconsistency = 984768 16997955 17004426 18637281 18643755 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = -489358 16515069 16518612 18643756 18647468 NC_060942.1 NC_000018.10 95.92 True relocation, inconsistency = 3635438 20156503 20161011 18649921 18654430 NC_060942.1 NC_000018.10 98.03 True relocation, inconsistency = 166785 20329080 20330008 18655714 18656642 NC_060942.1 NC_000018.10 96.23 True local misassembly 20330009 20334691 18656983 18661671 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = 182492 20517184 20519947 18661672 18664436 NC_060942.1 NC_000018.10 98.02 True relocation, inconsistency = 380269 20901188 20903556 18665408 18667776 NC_060942.1 NC_000018.10 98.02 True relocation, inconsistency = -39661 20863896 20865025 18667777 18668907 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = -3707456 17157620 17164983 18668958 18676323 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 1825977 18991352 18996516 18676715 18681878 NC_060942.1 NC_000018.10 98.88 True fake: not a misassembly (possible transposable element) 19887351 19889597 18681879 18684126 NC_060942.1 NC_000018.10 98.49 True fake: not a misassembly (possible transposable element) 19002072 19004968 18687271 18690167 NC_060942.1 NC_000018.10 98.72 True indel: indel (<= 5bp) 19005276 19015272 18690476 18700299 NC_060942.1 NC_000018.10 96.88 True fake: not a misassembly (possible transposable element) 16112424 16116061 18700300 18703940 NC_060942.1 NC_000018.10 97.99 True fake: not a misassembly (possible transposable element) 19031599 19036072 18716456 18720931 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = -669102 18366971 18370770 18720932 18724731 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = -619813 17750958 17756145 18724732 18730086 NC_060942.1 NC_000018.10 95.74 True relocation, inconsistency = 3113068 20869214 20870403 18730087 18731276 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -4866001 16004805 16006838 18731679 18733715 NC_060942.1 NC_000018.10 97.51 True relocation, inconsistency = 3319928 19326767 19330920 18733716 18737870 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = -2183081 17147840 17153501 18737871 18743538 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = 122266 17275768 17278019 18743539 18745791 NC_060942.1 NC_000018.10 98.07 True relocation, inconsistency = 1114492 18392512 18398181 18745792 18751462 NC_060942.1 NC_000018.10 99.03 True relocation, inconsistency = 1332472 19730654 19733652 18751463 18754461 NC_060942.1 NC_000018.10 98.35 True local misassembly 19733653 19736363 18754820 18757532 NC_060942.1 NC_000018.10 98.23 True local misassembly 19736364 19737436 18757875 18758947 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = -1958561 17781484 17784806 18761556 18764878 NC_060942.1 NC_000018.10 98.95 True relocation, inconsistency = -1230043 16555135 16561852 18765250 18771968 NC_060942.1 NC_000018.10 98.04 True relocation, inconsistency = 3143472 19705513 19706951 18772157 18773595 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = -1914271 17792681 17797429 18773596 18778351 NC_060942.1 NC_000018.10 98.28 True local misassembly 17799536 17806877 18780454 18787795 NC_060942.1 NC_000018.10 98.11 True relocation, inconsistency = -1821426 15985452 15986782 18787796 18789128 NC_060942.1 NC_000018.10 96.85 True relocation, inconsistency = 3962981 19952206 19955197 18791571 18794561 NC_060942.1 NC_000018.10 98.73 True relocation, inconsistency = -3983648 15975091 15977581 18798103 18800594 NC_060942.1 NC_000018.10 97.27 True relocation, inconsistency = 4349639 20327431 20328595 18800805 18801970 NC_060942.1 NC_000018.10 98.28 True relocation, inconsistency = -1423466 18907795 18911226 18804636 18808069 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = -2906882 16004771 16009202 18808496 18812929 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = 4765442 20774807 20775773 18813092 18814059 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = 98522 20874521 20876310 18814285 18816075 NC_060942.1 NC_000018.10 97.95 True relocation, inconsistency = -570442 20305869 20309876 18816076 18820085 NC_060942.1 NC_000018.10 97.78 True relocation, inconsistency = -504401 19805684 19809013 18820294 18823623 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = -3816771 15992612 15996227 18823993 18827610 NC_060942.1 NC_000018.10 96.35 True relocation, inconsistency = 367908 16364456 16367728 18827931 18831205 NC_060942.1 NC_000018.10 98.84 True relocation, inconsistency = 1411990 17779719 17780305 18831206 18831792 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = -1108279 16672027 16673078 18831793 18832847 NC_060942.1 NC_000018.10 99.01 True relocation, inconsistency = -203164 16469915 16477425 18832848 18840362 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = 3341549 19818975 19824554 18840363 18845944 NC_060942.1 NC_000018.10 97.24 True relocation, inconsistency = 776619 20601294 20602884 18846065 18847656 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = -503219 20101762 20103108 18849753 18851099 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = -3233551 16869558 16873236 18851100 18854779 NC_060942.1 NC_000018.10 99.08 True relocation, inconsistency = -519755 16353928 16354822 18855226 18856120 NC_060942.1 NC_000018.10 98.1 True relocation, inconsistency = 856450 17211779 17212546 18856627 18857394 NC_060942.1 NC_000018.10 98.89 True relocation, inconsistency = -1074504 16138043 16143743 18857395 18863098 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = 1960644 18104388 18111836 18863099 18870545 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = 772991 18884828 18889919 18870546 18875637 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = 1876701 20766839 20768807 18875856 18877824 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = -2994027 17774781 17775339 18877825 18878383 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = -1129642 16645698 16650845 18878384 18883528 NC_060942.1 NC_000018.10 98.31 True local misassembly 16647790 16651096 18883529 18886837 NC_060942.1 NC_000018.10 98.48 True relocation, inconsistency = -329502 16321627 16322322 18886870 18887565 NC_060942.1 NC_000018.10 95.81 True relocation, inconsistency = 4189202 20511525 20514929 18887566 18890969 NC_060942.1 NC_000018.10 97.59 True relocation, inconsistency = -4129664 16386168 16390001 18891872 18895708 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = 28131 16418133 16420336 18895709 18897912 NC_060942.1 NC_000018.10 98.8 True relocation, inconsistency = -411983 16008354 16015246 18897913 18904814 NC_060942.1 NC_000018.10 97.94 True relocation, inconsistency = 103726 16120734 16121797 18906576 18907641 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 2032227 18154025 18161232 18907642 18914844 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = -1901789 16259444 16263223 18914845 18918625 NC_060942.1 NC_000018.10 98.13 True relocation, inconsistency = 3475822 19739046 19741222 18918626 18920802 NC_060942.1 NC_000018.10 98.29 True relocation, inconsistency = -2624175 17117048 17121066 18920803 18924822 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = 2632662 19754131 19755200 18925225 18926294 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = -3203033 16552168 16556177 18926295 18930304 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = 3783047 20339563 20343577 18930643 18934660 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = -3896671 16447361 16450537 18935115 18938291 NC_060942.1 NC_000018.10 99.34 True local misassembly 16450538 16452330 18938629 18940421 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = 2499640 18952376 18958719 18940827 18947169 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = 1868434 20850205 20852428 18970221 18972444 NC_060942.1 NC_000018.10 98.52 True relocation, inconsistency = -4869725 15990317 15994626 18980058 18984368 NC_060942.1 NC_000018.10 97.26 True relocation, inconsistency = 4175430 20174667 20178145 18988979 18992458 NC_060942.1 NC_000018.10 98.74 True relocation, inconsistency = -886717 19291429 19292085 18992459 18993115 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = 1138162 20430248 20431632 18993116 18994500 NC_060942.1 NC_000018.10 98.48 True relocation, inconsistency = -3696773 16735296 16740965 18994937 19000606 NC_060942.1 NC_000018.10 98.64 True relocation, inconsistency = -83428 16657538 16658889 19000607 19001959 NC_060942.1 NC_000018.10 96.75 True relocation, inconsistency = 432014 17091510 17093665 19002566 19004723 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 3169113 20262779 20267143 19004724 19009087 NC_060942.1 NC_000018.10 97.76 True relocation, inconsistency = -3881600 16385947 16390023 19009491 19013571 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 354408 16744432 16747488 19013572 19016629 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = -156722 16590767 16595085 19016630 19020949 NC_060942.1 NC_000018.10 98.91 True relocation, inconsistency = -495440 16099988 16105872 19021292 19027181 NC_060942.1 NC_000018.10 98.23 True relocation, inconsistency = 4494069 20599942 20601525 19027182 19028766 NC_060942.1 NC_000018.10 98.84 True relocation, inconsistency = -2932699 17669230 17672286 19029170 19032226 NC_060942.1 NC_000018.10 98.77 True relocation, inconsistency = -1664758 16007529 16012504 19032227 19037208 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = 3827827 19840332 19841080 19037209 19037957 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -3097705 16743412 16746546 19037994 19041129 NC_060942.1 NC_000018.10 97.81 True relocation, inconsistency = 2308333 19054880 19063202 19041130 19049454 NC_060942.1 NC_000018.10 98.9 True relocation, inconsistency = 1233173 20296766 20298136 19049845 19051215 NC_060942.1 NC_000018.10 98.2 True relocation, inconsistency = -3776565 16521572 16526936 19051216 19056581 NC_060942.1 NC_000018.10 98.68 True local misassembly 16522808 16524933 19056859 19058984 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = 141106 16666040 16672336 19058985 19065287 NC_060942.1 NC_000018.10 98.56 True relocation, inconsistency = 1043504 17715841 17719159 19065288 19068774 NC_060942.1 NC_000018.10 95.69 True relocation, inconsistency = 2774452 20493612 20496157 19068775 19071322 NC_060942.1 NC_000018.10 97.94 True relocation, inconsistency = -390738 20105829 20108648 19071732 19074552 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -4105620 16003034 16004891 19074558 19076416 NC_060942.1 NC_000018.10 97.8 True relocation, inconsistency = 1716145 17721454 17722884 19076834 19078264 NC_060942.1 NC_000018.10 99.2 True relocation, inconsistency = 1364876 19087761 19094044 19078265 19084553 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = -1699782 17394653 17397667 19084944 19087960 NC_060942.1 NC_000018.10 98.91 True relocation, inconsistency = -1138079 16259589 16260339 19087961 19088711 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = 1439412 17699752 17706119 19088712 19095080 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 1580562 19286682 19289203 19095081 19097603 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = -2752949 16536592 16538619 19097941 19099968 NC_060942.1 NC_000018.10 98.33 True relocation, inconsistency = 108549 16647169 16652798 19099969 19105598 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = 2472473 19125272 19128292 19105599 19108618 NC_060942.1 NC_000018.10 98.48 True local misassembly 19128635 19129653 19108619 19109636 NC_060942.1 NC_000018.10 98.33 True local misassembly 19130329 19132366 19109637 19111674 NC_060942.1 NC_000018.10 98.63 True local misassembly 19132367 19134004 19112350 19113988 NC_060942.1 NC_000018.10 99.45 True relocation, inconsistency = 1116065 20250213 20251844 19114132 19115763 NC_060942.1 NC_000018.10 98.84 True relocation, inconsistency = -422350 19829898 19832863 19116167 19119135 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = 1010042 20845942 20847101 19122172 19123332 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -220323 20626779 20629972 19123333 19126526 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -4128578 16501395 16504299 19126527 19129430 NC_060942.1 NC_000018.10 98.67 True relocation, inconsistency = 2265343 18769643 18780687 19129431 19140477 NC_060942.1 NC_000018.10 98.91 True local misassembly 18781030 18781828 19140478 19141276 NC_060942.1 NC_000018.10 98.0 True relocation, inconsistency = -1665271 17116644 17122424 19141363 19147146 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = 407514 17529939 17532070 19147147 19149278 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 2836418 20368489 20369743 19149279 19150533 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = -3448370 16921777 16928368 19150937 19157534 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = 3785534 20713903 20715717 19157535 19159351 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -859044 19858774 19860538 19161452 19163217 NC_060942.1 NC_000018.10 97.45 True relocation, inconsistency = 582796 20443335 20448182 19163218 19168065 NC_060942.1 NC_000018.10 97.94 True relocation, inconsistency = 431768 20880687 20881829 19168802 19169945 NC_060942.1 NC_000018.10 97.43 True relocation, inconsistency = -4401951 16479879 16483532 19169946 19173600 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = 157040 16640605 16642609 19173633 19175637 NC_060942.1 NC_000018.10 98.85 True relocation, inconsistency = 2547938 19190698 19197306 19175788 19182395 NC_060942.1 NC_000018.10 98.8 True relocation, scaffold gap is present, inconsistency = -394498 18803444 18805989 19183031 19185576 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = -477208 18328782 18335299 19185577 19192094 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -711683 17623617 17624748 19192095 19193227 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = -511810 17113342 17115637 19193631 19195927 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 484000 17600038 17604392 19196328 19200683 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = -1227849 16377960 16381108 19202100 19205249 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = 731467 17112645 17113982 19205319 19206656 NC_060942.1 NC_000018.10 97.4 True relocation, inconsistency = 2729137 19843120 19846143 19206657 19209678 NC_060942.1 NC_000018.10 97.35 True relocation, inconsistency = -2717955 17134100 17135734 19215590 19217225 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = 3410501 20550949 20552592 19221939 19223582 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -786284 19766713 19768747 19223987 19226021 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = -3004987 16763761 16769456 19226022 19231718 NC_060942.1 NC_000018.10 98.05 True relocation, inconsistency = 3191860 19961317 19962442 19231719 19232846 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -2958253 17004190 17009173 19232847 19237830 NC_060942.1 NC_000018.10 98.56 True relocation, inconsistency = 24758 17033932 17038243 19237831 19242147 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = -906143 16132101 16132939 19242148 19242986 NC_060942.1 NC_000018.10 98.22 True relocation, inconsistency = 4100953 20233893 20235526 19242987 19244620 NC_060942.1 NC_000018.10 99.02 True relocation, inconsistency = -4113160 16123021 16128218 19245275 19250470 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = 1251897 17380116 17381388 19250471 19251743 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -1372916 16012686 16014371 19255957 19257642 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = 1356806 17373662 17374404 19260127 19260869 NC_060942.1 NC_000018.10 99.03 True relocation, inconsistency = -994149 16380256 16384945 19260870 19265559 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = 3361409 19748918 19751967 19268123 19271172 NC_060942.1 NC_000018.10 98.56 True local misassembly 19751968 19752885 19271515 19272432 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = -22388 19731388 19733611 19273323 19275546 NC_060942.1 NC_000018.10 99.15 True relocation, inconsistency = -44485 19689127 19693015 19275547 19279441 NC_060942.1 NC_000018.10 96.71 True relocation, inconsistency = -3703301 15993561 15995668 19283288 19285397 NC_060942.1 NC_000018.10 96.87 True indel: indel (> 5bp) 15995669 15996250 19285565 19286146 NC_060942.1 NC_000018.10 97.59 True relocation, inconsistency = 4105954 20107189 20111518 19291131 19295458 NC_060942.1 NC_000018.10 98.5 True relocation, inconsistency = 601454 20715433 20717126 19297919 19299610 NC_060942.1 NC_000018.10 98.3 True relocation, inconsistency = -3091987 17625140 17629655 19299611 19304124 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = 3245303 20875124 20877011 19304290 19306177 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = -159251 20718163 20719792 19306580 19308209 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = -565053 20155143 20156774 19308613 19310244 NC_060942.1 NC_000018.10 98.59 True relocation, inconsistency = -215852 19941313 19944317 19310635 19313641 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = -2471018 17474007 17476842 19314349 19317184 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = -1350421 16126430 16129560 19317193 19320324 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = 681350 16810911 16811990 19320325 19321405 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = 2912020 19724011 19729476 19321406 19326870 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 202440 19931917 19934797 19326871 19329751 NC_060942.1 NC_000018.10 98.7 True relocation, inconsistency = -3697558 16240354 16241939 19332866 19334451 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 1946888 18188828 18195124 19334452 19340748 NC_060942.1 NC_000018.10 98.22 True local misassembly 18195463 18197333 19340749 19342616 NC_060942.1 NC_000018.10 98.02 True relocation, inconsistency = -1021509 17176501 17180258 19343293 19347054 NC_060942.1 NC_000018.10 98.7 True relocation, scaffold gap is present, inconsistency = 2544583 19729856 19731499 19352069 19353712 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = -789196 18947791 18951799 19359200 19363210 NC_060942.1 NC_000018.10 98.95 True relocation, inconsistency = 902319 19854323 19855269 19363415 19364362 NC_060942.1 NC_000018.10 98.32 True fake: not a misassembly (possible transposable element) 20823724 20826649 19364363 19367289 NC_060942.1 NC_000018.10 98.09 True fake: not a misassembly (possible transposable element) 19858403 19862028 19367658 19371282 NC_060942.1 NC_000018.10 97.44 True relocation, inconsistency = 213073 20075102 20076787 19371283 19372969 NC_060942.1 NC_000018.10 98.13 True relocation, inconsistency = -2981568 17095220 17098914 19372970 19376668 NC_060942.1 NC_000018.10 98.35 True relocation, inconsistency = 3761528 20860443 20862428 19376669 19378655 NC_060942.1 NC_000018.10 98.61 True relocation, inconsistency = -710408 20152423 20155229 19379058 19381866 NC_060942.1 NC_000018.10 98.04 True relocation, inconsistency = 735671 20890901 20891589 19381867 19382555 NC_060942.1 NC_000018.10 97.98 True relocation, inconsistency = -56975 20834835 20835923 19382776 19383864 NC_060942.1 NC_000018.10 98.8 True relocation, inconsistency = -4826147 16009777 16012527 19383865 19386616 NC_060942.1 NC_000018.10 98.15 True indel: indel (<= 5bp) 16012688 16014459 19386781 19388553 NC_060942.1 NC_000018.10 98.04 True relocation, inconsistency = 285665 16300125 16304638 19388554 19393067 NC_060942.1 NC_000018.10 97.98 True relocation, inconsistency = 3564596 19869235 19870656 19393068 19394486 NC_060942.1 NC_000018.10 97.81 True relocation, inconsistency = -158266 19712391 19715867 19394487 19397961 NC_060942.1 NC_000018.10 97.67 True local misassembly 19716206 19717919 19397962 19399676 NC_060942.1 NC_000018.10 97.78 True relocation, inconsistency = -82032 19636129 19637584 19399918 19401374 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = -3644904 16004652 16006903 19413346 19415597 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = 4731535 20738795 20740605 19415954 19417765 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = -1688496 19053527 19054199 19419183 19419854 NC_060942.1 NC_000018.10 98.51 True indel: indel (> 5bp) 19054371 19058267 19419855 19423749 NC_060942.1 NC_000018.10 98.74 True local misassembly 19058606 19064377 19423750 19429522 NC_060942.1 NC_000018.10 98.8 True relocation, inconsistency = -509185 18569039 18570734 19443369 19445064 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 1238000 19810136 19813203 19446466 19449535 NC_060942.1 NC_000018.10 97.92 True relocation, inconsistency = -866315 18954156 18959924 19456803 19462577 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = -2358063 16601864 16606447 19462580 19467164 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = -642025 15969909 15971045 19472651 19473788 NC_060942.1 NC_000018.10 98.95 True relocation, inconsistency = 369527 16345809 16346631 19479025 19479847 NC_060942.1 NC_000018.10 96.51 True relocation, inconsistency = 2630389 18977021 18981116 19479848 19483943 NC_060942.1 NC_000018.10 98.71 True local misassembly 18981792 18984118 19483944 19486270 NC_060942.1 NC_000018.10 98.24 True local misassembly 18984461 18985864 19486271 19487675 NC_060942.1 NC_000018.10 98.43 True local misassembly 18985865 18987931 19489030 19491097 NC_060942.1 NC_000018.10 98.31 True local misassembly 18988269 18991643 19491098 19494477 NC_060942.1 NC_000018.10 96.15 True relocation, inconsistency = 752582 19744226 19745136 19494478 19495388 NC_060942.1 NC_000018.10 98.27 True relocation, inconsistency = -3659141 16085996 16089814 19495389 19499211 NC_060942.1 NC_000018.10 98.01 True relocation, inconsistency = 3910074 20003175 20003970 19502498 19503293 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = 305491 20309870 20311144 19503702 19504976 NC_060942.1 NC_000018.10 96.78 True relocation, inconsistency = -3575792 16735521 16738588 19505145 19508212 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = 1582911 18321905 18326253 19508618 19512963 NC_060942.1 NC_000018.10 98.37 True relocation, inconsistency = -626917 17699337 17706642 19512964 19520273 NC_060942.1 NC_000018.10 98.6 True relocation, inconsistency = -1633914 16073286 16075581 19520831 19523127 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 180268 16255850 16256704 19523128 19523982 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = 2743588 19000868 19008265 19524558 19531958 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = -1529537 17478729 17484473 19531959 19537704 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = 1024766 18509409 18511460 19537874 19539926 NC_060942.1 NC_000018.10 99.46 True relocation, inconsistency = -1749467 16762148 16765882 19540081 19543817 NC_060942.1 NC_000018.10 98.9 True relocation, inconsistency = -760820 16005068 16011227 19543823 19550151 NC_060942.1 NC_000018.10 95.26 True relocation, inconsistency = 3852793 19865436 19866584 19551567 19552716 NC_060942.1 NC_000018.10 98.78 True local misassembly 19866585 19870080 19553054 19556550 NC_060942.1 NC_000018.10 98.2 True relocation, inconsistency = -3868907 16001378 16005809 19556755 19561188 NC_060942.1 NC_000018.10 97.72 True local misassembly 16001766 16008521 19561213 19567971 NC_060942.1 NC_000018.10 97.84 True fake: not a misassembly (possible transposable element) 20326669 20328651 19567972 19569956 NC_060942.1 NC_000018.10 98.12 True fake: not a misassembly (possible transposable element) 16009563 16014398 19570708 19575545 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = 3194122 19216976 19234263 19584001 19600956 NC_060942.1 NC_000018.10 96.56 True local misassembly 19250202 19253115 19617248 19620164 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = 1489761 20744519 20746951 19621807 19624241 NC_060942.1 NC_000018.10 99.18 True relocation, inconsistency = -4743225 16004805 16008450 19625320 19628968 NC_060942.1 NC_000018.10 98.16 True relocation, inconsistency = 3101359 19110481 19115197 19629640 19634357 NC_060942.1 NC_000018.10 98.33 True local misassembly 19115198 19119311 19635033 19639146 NC_060942.1 NC_000018.10 99.08 True local misassembly 19119820 19123379 19639147 19642706 NC_060942.1 NC_000018.10 99.1 True local misassembly 19123718 19126261 19642707 19645251 NC_060942.1 NC_000018.10 98.66 True local misassembly 19126262 19129623 19645927 19649291 NC_060942.1 NC_000018.10 98.34 True relocation, inconsistency = -1442549 17687075 17693917 19649292 19656137 NC_060942.1 NC_000018.10 98.29 True relocation, inconsistency = 2484580 20178498 20179655 19656138 19657466 NC_060942.1 NC_000018.10 95.21 True relocation, inconsistency = -3335600 16844056 16850852 19657467 19664264 NC_060942.1 NC_000018.10 98.91 True relocation, inconsistency = 2280857 19131710 19136433 19664265 19668988 NC_060942.1 NC_000018.10 98.76 True local misassembly 19137109 19139106 19668989 19670986 NC_060942.1 NC_000018.10 98.45 True local misassembly 19139239 19143049 19671803 19675614 NC_060942.1 NC_000018.10 97.01 True relocation, inconsistency = 1177786 20321574 20322611 19676353 19677390 NC_060942.1 NC_000018.10 98.36 True indel: indel (> 5bp) 20322612 20323188 19677558 19678134 NC_060942.1 NC_000018.10 99.13 True relocation, inconsistency = 417967 20741187 20743657 19678166 19680636 NC_060942.1 NC_000018.10 97.81 True relocation, inconsistency = -1584551 19159464 19163411 19680994 19684939 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = -72233 19091179 19094808 19684940 19688569 NC_060942.1 NC_000018.10 97.51 True relocation, inconsistency = -2059959 17035018 17035732 19688738 19689457 NC_060942.1 NC_000018.10 97.91 True relocation, inconsistency = 2291410 19327143 19342458 19689458 19704938 NC_060942.1 NC_000018.10 97.37 True relocation, inconsistency = -3362964 15980834 15981521 19706278 19706966 NC_060942.1 NC_000018.10 95.65 True indel: indel (> 5bp) 15981693 15984415 19706967 19709690 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = 3362460 19366292 19370960 19729107 19733780 NC_060942.1 NC_000018.10 99.02 True relocation, inconsistency = -3321644 16054305 16059194 19738769 19743663 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 3161578 19220773 19230459 19743664 19753349 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 509087 19740140 19742764 19753943 19756567 NC_060942.1 NC_000018.10 98.67 True local misassembly 19742765 19743971 19756910 19758119 NC_060942.1 NC_000018.10 96.94 True relocation, inconsistency = -3552879 16192854 16195578 19759881 19762606 NC_060942.1 NC_000018.10 97.76 True relocation, inconsistency = 4700926 20897578 20898112 19763680 19764214 NC_060942.1 NC_000018.10 98.97 True relocation, inconsistency = -4646738 16251375 16252815 19764215 19765661 NC_060942.1 NC_000018.10 96.96 True relocation, inconsistency = -72475 16181216 16184409 19766537 19769734 NC_060942.1 NC_000018.10 97.37 True relocation, inconsistency = 4319925 20504335 20505353 19769735 19770753 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -4498918 16006805 16010229 19771123 19774550 NC_060942.1 NC_000018.10 97.96 True local misassembly 16004771 16015246 19775194 19785336 NC_060942.1 NC_000018.10 95.09 True relocation, inconsistency = 788126 16803373 16806747 19785337 19788708 NC_060942.1 NC_000018.10 99.05 True relocation, inconsistency = 2985035 19791783 19792477 19788709 19789404 NC_060942.1 NC_000018.10 97.8 True relocation, inconsistency = 1117077 20910792 20912301 19790642 19792154 NC_060942.1 NC_000018.10 98.68 True relocation, inconsistency = -4904138 16008164 16013894 19792155 19797887 NC_060942.1 NC_000018.10 97.38 True relocation, inconsistency = 2296742 18311466 18313082 19798717 19800331 NC_060942.1 NC_000018.10 98.57 True relocation, inconsistency = -369817 17943266 17947576 19800332 19804638 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = 2294042 20242042 20245036 19805062 19808057 NC_060942.1 NC_000018.10 98.93 True relocation, inconsistency = -969214 19276236 19278355 19808471 19810590 NC_060942.1 NC_000018.10 98.82 True relocation, inconsistency = 45788 19324312 19329322 19810759 19815769 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = -3070503 16258820 16259415 19815770 19816367 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 727890 16987510 16989677 19816572 19818740 NC_060942.1 NC_000018.10 98.39 True relocation, inconsistency = 3289872 20279775 20281402 19818966 19820593 NC_060942.1 NC_000018.10 99.08 True relocation, inconsistency = -90710 20192145 20193200 19822046 19823102 NC_060942.1 NC_000018.10 96.5 True indel: indel (> 5bp) 20193201 20194592 19823270 19824660 NC_060942.1 NC_000018.10 99.21 True relocation, inconsistency = -3658001 16536592 16538388 19824661 19826457 NC_060942.1 NC_000018.10 98.99 True relocation, inconsistency = 1182571 17720960 17723587 19826458 19829089 NC_060942.1 NC_000018.10 98.56 True relocation, inconsistency = -1724787 16001378 16006878 19831667 19837170 NC_060942.1 NC_000018.10 97.69 True local misassembly 16006879 16012364 19837508 19842997 NC_060942.1 NC_000018.10 97.7 True relocation, inconsistency = 4137121 20156503 20159494 19850015 19853006 NC_060942.1 NC_000018.10 98.26 True fake: not a misassembly (possible transposable element) 16158252 16159671 19854977 19856398 NC_060942.1 NC_000018.10 98.31 True fake: not a misassembly (possible transposable element) 20164570 20168142 19858245 19861817 NC_060942.1 NC_000018.10 98.54 True local misassembly 20168480 20170927 19861818 19864266 NC_060942.1 NC_000018.10 98.16 True local misassembly 20170928 20171861 19864609 19865543 NC_060942.1 NC_000018.10 97.65 True relocation, inconsistency = -18316 20157896 20159304 19869894 19871302 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = -1252619 18906686 18910422 19871303 19875041 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = 1594579 20505080 20506713 19875120 19876753 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = -1163728 19343765 19349367 19877533 19883134 NC_060942.1 NC_000018.10 98.07 True relocation, inconsistency = 1500798 20850166 20851131 19883135 19884101 NC_060942.1 NC_000018.10 97.71 True indel: indel (> 5bp) 20851303 20852242 19884102 19885041 NC_060942.1 NC_000018.10 97.34 True relocation, inconsistency = -1163714 19688607 19689469 19885120 19885982 NC_060942.1 NC_000018.10 98.84 True indel: stretch of mismatches 19689470 19693613 19885983 19890126 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = -2286469 17407145 17407789 19890127 19890772 NC_060942.1 NC_000018.10 98.07 True relocation, inconsistency = -400702 17007088 17011532 19890773 19895219 NC_060942.1 NC_000018.10 98.43 True relocation, inconsistency = -835943 16175889 16178735 19895519 19898366 NC_060942.1 NC_000018.10 97.96 True relocation, inconsistency = 3711634 19890673 19892317 19898670 19900313 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = -3885883 16006839 16012337 19900718 19906219 NC_060942.1 NC_000018.10 98.04 True relocation, inconsistency = 4312048 20325707 20328438 19907541 19910272 NC_060942.1 NC_000018.10 98.79 True indel: indel (> 5bp) 20328439 20329825 19910440 19911825 NC_060942.1 NC_000018.10 97.55 True relocation, inconsistency = -3113295 17216531 17217901 19911826 19913196 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = -890199 16328239 16330255 19913733 19915750 NC_060942.1 NC_000018.10 98.91 True local misassembly 16330598 16331431 19915751 19916584 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 3534752 19866587 19868028 19916988 19918429 NC_060942.1 NC_000018.10 98.83 True relocation, inconsistency = -3197123 16670906 16672518 19918430 19920042 NC_060942.1 NC_000018.10 97.95 True indel: indel (> 5bp) 16672519 16673221 19920210 19920912 NC_060942.1 NC_000018.10 97.58 True relocation, inconsistency = -518211 16156310 16158476 19922212 19924382 NC_060942.1 NC_000018.10 98.02 True relocation, inconsistency = 4556731 20715446 20717058 19924621 19926233 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = -3653285 17064517 17066501 19926977 19928962 NC_060942.1 NC_000018.10 98.44 True relocation, inconsistency = 3864433 20933023 20933650 19931051 19931680 NC_060942.1 NC_000018.10 96.35 True relocation, inconsistency = -3824782 17116648 17120201 19939460 19943011 NC_060942.1 NC_000018.10 98.48 True indel: indel (> 5bp) 17120202 17122240 19943179 19945216 NC_060942.1 NC_000018.10 96.81 True relocation, inconsistency = -294462 16827779 16829637 19945217 19947075 NC_060942.1 NC_000018.10 99.52 True local misassembly 16829976 16831689 19947076 19948790 NC_060942.1 NC_000018.10 99.65 True relocation, inconsistency = 3970362 20803202 20804815 19949941 19951554 NC_060942.1 NC_000018.10 97.77 True indel: indel (> 5bp) 20804987 20805953 19951555 19952521 NC_060942.1 NC_000018.10 98.04 True relocation, inconsistency = -4696974 16109184 16109826 19952726 19953368 NC_060942.1 NC_000018.10 99.22 True relocation, inconsistency = 1499658 17611330 17612967 19955214 19956851 NC_060942.1 NC_000018.10 98.76 True relocation, inconsistency = 1839641 19452609 19464882 19956852 19969130 NC_060942.1 NC_000018.10 98.47 True relocation, inconsistency = -474437 18990611 18993890 19969296 19972574 NC_060942.1 NC_000018.10 98.75 True local misassembly 18993891 18995087 19973934 19975130 NC_060942.1 NC_000018.10 99.26 True relocation, inconsistency = -1973312 17021776 17023863 19975131 19977218 NC_060942.1 NC_000018.10 98.9 True relocation, inconsistency = 3373704 20399015 20400490 19978666 19980142 NC_060942.1 NC_000018.10 98.26 True relocation, inconsistency = -695829 19704662 19707472 19980143 19982953 NC_060942.1 NC_000018.10 97.65 True relocation, inconsistency = 1144362 20856143 20858192 19987262 19989315 NC_060942.1 NC_000018.10 98.0 True relocation, inconsistency = -557723 20308370 20309610 19997216 19998457 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = -4185904 16124129 16126418 19998880 20001169 NC_060942.1 NC_000018.10 99.17 True indel: indel (> 5bp) 16126419 16127523 20001337 20002441 NC_060942.1 NC_000018.10 97.74 True relocation, inconsistency = 4562276 20694713 20696153 20007355 20008798 NC_060942.1 NC_000018.10 97.99 True indel: indel (> 5bp) 20696154 20697701 20008970 20010517 NC_060942.1 NC_000018.10 98.71 True relocation, inconsistency = -3586123 17112211 17115646 20011150 20014586 NC_060942.1 NC_000018.10 98.78 True relocation, inconsistency = 236919 17352566 17354369 20014587 20016390 NC_060942.1 NC_000018.10 99.06 True relocation, inconsistency = 669700 18024070 18030030 20016391 20022350 NC_060942.1 NC_000018.10 98.54 True relocation, inconsistency = 999559 19029696 19039965 20022457 20032558 NC_060942.1 NC_000018.10 97.22 True relocation, inconsistency = -1993661 17046306 17047991 20032560 20034245 NC_060942.1 NC_000018.10 99.64 True relocation, inconsistency = -127659 16920333 16921696 20034246 20035609 NC_060942.1 NC_000018.10 99.12 True relocation, inconsistency = 3758668 20681119 20684108 20036364 20039354 NC_060942.1 NC_000018.10 98.26 True relocation, inconsistency = -1040065 19644869 19647708 20040180 20043021 NC_060942.1 NC_000018.10 98.63 True local misassembly 19661303 19662379 20056582 20057659 NC_060942.1 NC_000018.10 99.44 True relocation, inconsistency = -3664761 15999641 16002024 20059682 20062066 NC_060942.1 NC_000018.10 97.53 True relocation, inconsistency = -12036 15992612 15996234 20064690 20068317 NC_060942.1 NC_000018.10 97.24 True relocation, inconsistency = 279744 16282385 16284818 20074724 20077158 NC_060942.1 NC_000018.10 97.95 True relocation, inconsistency = 3398464 19683794 19684516 20077670 20078392 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = -2353604 17330913 17335616 20078393 20083098 NC_060942.1 NC_000018.10 97.9 True relocation, inconsistency = 3059965 20395582 20396258 20083099 20083779 NC_060942.1 NC_000018.10 97.28 True relocation, inconsistency = -4398643 15998019 16001586 20084183 20087754 NC_060942.1 NC_000018.10 97.52 True relocation, inconsistency = 3137481 19139068 19145081 20087755 20093769 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = -55783 19089299 19095419 20093770 20099891 NC_060942.1 NC_000018.10 98.46 True relocation, inconsistency = -1834450 17260970 17262723 20099892 20101648 NC_060942.1 NC_000018.10 98.58 True relocation, inconsistency = 3382716 20652570 20654200 20108779 20110410 NC_060942.1 NC_000018.10 99.08 True local misassembly 20658008 20659638 20114545 20116176 NC_060942.1 NC_000018.10 98.41 True relocation, inconsistency = -996046 19667542 19669186 20120126 20121770 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 718580 20388169 20389526 20122173 20123530 NC_060942.1 NC_000018.10 98.38 True relocation, inconsistency = -546542 19843152 19846820 20123698 20127370 NC_060942.1 NC_000018.10 98.2 True relocation, inconsistency = -3178093 16669131 16673217 20127774 20131869 NC_060942.1 NC_000018.10 97.83 True relocation, inconsistency = 3863489 20536707 20537451 20131870 20132613 NC_060942.1 NC_000018.10 98.01 True relocation, inconsistency = -4162281 16375171 16378907 20132614 20136351 NC_060942.1 NC_000018.10 98.96 True relocation, inconsistency = 1122865 17501773 17503299 20136352 20137878 NC_060942.1 NC_000018.10 98.89 True relocation, inconsistency = -1510771 15993561 15995975 20138911 20141325 NC_060942.1 NC_000018.10 96.06 True relocation, inconsistency = 4078573 20074549 20077368 20141326 20144146 NC_060942.1 NC_000018.10 98.19 True relocation, inconsistency = 164269 20242042 20243412 20144551 20145921 NC_060942.1 NC_000018.10 98.83 True indel: indel (> 5bp) 20243413 20244958 20146089 20147634 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = 674358 20919620 20921849 20147938 20150169 NC_060942.1 NC_000018.10 97.18 True relocation, inconsistency = -4914325 16007993 16015794 20150638 20158447 NC_060942.1 NC_000018.10 97.63 True relocation, inconsistency = 2040270 18056065 18057552 20158448 20159933 NC_060942.1 NC_000018.10 98.63 True relocation, inconsistency = -1589108 16468595 16472326 20160084 20163815 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 4386700 20859525 20861468 20164314 20166260 NC_060942.1 NC_000018.10 97.0 True relocation, inconsistency = -4324635 16536834 16539153 20166261 20168580 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = 4078352 20618914 20620373 20169989 20171449 NC_060942.1 NC_000018.10 98.15 True relocation, inconsistency = -4065622 16554832 16561544 20171530 20178245 NC_060942.1 NC_000018.10 98.21 True relocation, inconsistency = -558502 16003043 16007110 20178246 20182315 NC_060942.1 NC_000018.10 97.72 True relocation, inconsistency = 4706574 20714088 20715514 20182719 20184147 NC_060942.1 NC_000018.10 98.25 True local misassembly 20715515 20716803 20184485 20185774 NC_060942.1 NC_000018.10 97.91 True local misassembly 20716804 20718413 20186112 20187724 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = -3734689 16985526 16990525 20189526 20194692 NC_060942.1 NC_000018.10 95.18 True relocation, inconsistency = -271940 16718586 16721794 20194693 20197900 NC_060942.1 NC_000018.10 99.05 True relocation, inconsistency = 174820 16896943 16898827 20198229 20200115 NC_060942.1 NC_000018.10 97.99 True relocation, inconsistency = 2777165 19676653 19679106 20200776 20203230 NC_060942.1 NC_000018.10 98.36 True relocation, inconsistency = 474675 20153782 20156774 20203231 20206227 NC_060942.1 NC_000018.10 97.7 True relocation, inconsistency = -4150339 16006839 16014398 20206631 20214197 NC_060942.1 NC_000018.10 97.4 True relocation, inconsistency = 3888297 19913108 19914739 20224610 20226242 NC_060942.1 NC_000018.10 97.67 True relocation, inconsistency = -3934758 16006839 16010303 20253100 20256568 NC_060942.1 NC_000018.10 98.33 True relocation, inconsistency = 4804444 20846341 20847554 20288162 20289377 NC_060942.1 NC_000018.10 97.86 True indel: indel (> 5bp) 20847726 20848866 20289378 20290517 NC_060942.1 NC_000018.10 97.2 True local misassembly 20857056 20858006 20300402 20301356 NC_060942.1 NC_000018.10 97.49 True local misassembly 20859698 20860442 20303051 20303795 NC_060942.1 NC_000018.10 99.06 True indel: indel (> 5bp) 20860614 20861568 20303796 20304750 NC_060942.1 NC_000018.10 98.32 True relocation, inconsistency = -4606061 16255508 16256200 20304751 20305443 NC_060942.1 NC_000018.10 98.85 True relocation, inconsistency = 4131752 20393257 20394716 20310748 20312207 NC_060942.1 NC_000018.10 99.32 True relocation, inconsistency = 298390 20693351 20694799 20312452 20313901 NC_060942.1 NC_000018.10 98.07 True relocation, inconsistency = 230529 20925493 20925995 20314066 20314569 NC_060942.1 NC_000018.10 99.8 True relocation, inconsistency = -2873207 18052789 18054668 20314570 20316450 NC_060942.1 NC_000018.10 99.42 True relocation, inconsistency = -2048068 16007078 16012339 20316928 20322192 NC_060942.1 NC_000018.10 97.18 True local misassembly 16008272 16015186 20322193 20329110 NC_060942.1 NC_000018.10 97.8 True relocation, inconsistency = 862735 16877922 16881092 20329111 20332447 NC_060942.1 NC_000018.10 95.59 True relocation, inconsistency = 3885587 20766680 20768824 20332448 20334591 NC_060942.1 NC_000018.10 97.51 True relocation, inconsistency = -1479604 19289221 19290751 20334592 20336120 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = 1446708 20744528 20745418 20343189 20344079 NC_060942.1 NC_000018.10 99.33 True relocation, inconsistency = -4696779 16048844 16049824 20344284 20345264 NC_060942.1 NC_000018.10 98.88 True relocation, inconsistency = 1351412 17405535 17407489 20349563 20351518 NC_060942.1 NC_000018.10 99.03 True relocation, inconsistency = -1415980 15991853 15992639 20351862 20352648 NC_060942.1 NC_000018.10 97.46 True local misassembly 15992640 15996241 20352991 20356594 NC_060942.1 NC_000018.10 96.89 True relocation, inconsistency = 4703992 20702062 20703137 20358423 20359502 NC_060942.1 NC_000018.10 98.24 True relocation, inconsistency = -1170608 19533054 19540484 20360027 20367455 NC_060942.1 NC_000018.10 98.51 True relocation, inconsistency = 1378059 20919620 20921849 20368532 20370760 NC_060942.1 NC_000018.10 98.12 True relocation, inconsistency = -971650 19957633 19959042 20378194 20379603 NC_060942.1 NC_000018.10 98.09 True local misassembly 19959043 19960616 20380108 20381681 NC_060942.1 NC_000018.10 97.84 True local misassembly 19961396 19963355 20381777 20383740 NC_060942.1 NC_000018.10 95.98 True fake: not a misassembly (possible transposable element) 20855939 20856664 20386742 20387468 NC_060942.1 NC_000018.10 98.76 True fake: not a misassembly (possible transposable element) 19971243 19972874 20391604 20393236 NC_060942.1 NC_000018.10 98.04 True local misassembly 19979401 19981032 20399742 20401375 NC_060942.1 NC_000018.10 98.84 True relocation, inconsistency = 180848 20164570 20170991 20404065 20410487 NC_060942.1 NC_000018.10 97.84 True relocation, inconsistency = -4165278 16005714 16006937 20410488 20411712 NC_060942.1 NC_000018.10 97.47 True relocation, inconsistency = 4121109 20128285 20129736 20411951 20413403 NC_060942.1 NC_000018.10 97.87 True relocation, inconsistency = 748794 20884078 20885699 20418951 20420572 NC_060942.1 NC_000018.10 97.47 True indel: indel (> 5bp) 20885871 20886825 20420573 20421527 NC_060942.1 NC_000018.10 97.91 True relocation, inconsistency = -4887529 16001378 16004198 20423609 20426431 NC_060942.1 NC_000018.10 97.61 True relocation, inconsistency = 2887215 18891414 18904329 20426432 20439007 NC_060942.1 NC_000018.10 96.38 True relocation, inconsistency = -2624252 16280078 16280728 20439008 20439658 NC_060942.1 NC_000018.10 99.4 True local misassembly 16280729 16281420 20440001 20440692 NC_060942.1 NC_000018.10 97.4 True relocation, inconsistency = 2626971 18908556 18911282 20440857 20443580 NC_060942.1 NC_000018.10 98.31 True relocation, inconsistency = 889539 19801768 19802597 20444527 20445356 NC_060942.1 NC_000018.10 98.79 True relocation, inconsistency = 361562 20164160 20169937 20445357 20451138 NC_060942.1 NC_000018.10 98.18 True relocation, inconsistency = -348668 19821270 19823189 20451139 20453058 NC_060942.1 NC_000018.10 97.67 True relocation, inconsistency = -526529 19296661 19305327 20453059 20461729 NC_060942.1 NC_000018.10 98.64 True relocation, inconsistency = -3233129 16072199 16076787 20461730 20466322 NC_060942.1 NC_000018.10 97.43 True relocation, inconsistency = -67123 16009800 16015246 20466458 20471907 NC_060942.1 NC_000018.10 97.93 True relocation, inconsistency = -18986 15996261 15997364 20471908 20473011 NC_060942.1 NC_000018.10 96.99 True relocation, inconsistency = 3317892 19318407 19328213 20476162 20485975 NC_060942.1 NC_000018.10 98.71 True indel: indel (<= 5bp) 19328382 19331449 20486140 20489207 NC_060942.1 NC_000018.10 98.53 True relocation, inconsistency = -3325353 16006805 16010484 20489916 20493601 NC_060942.1 NC_000018.10 97.78 True relocation, inconsistency = 3051178 19062511 19066596 20494450 20498535 NC_060942.1 NC_000018.10 98.75 True relocation, inconsistency = -3066266 16001808 16007110 20500013 20505320 NC_060942.1 NC_000018.10 97.14 True relocation, inconsistency = 3333498 19340609 19344326 20505321 20509040 NC_060942.1 NC_000018.10 99.22 True relocation, inconsistency = -1591413 17753248 17755109 20509375 20511237 NC_060942.1 NC_000018.10 98.72 True relocation, inconsistency = -1263973 16491137 16494601 20511238 20514703 NC_060942.1 NC_000018.10 98.62 True relocation, inconsistency = 3220999 19715601 19716714 20514704 20515817 NC_060942.1 NC_000018.10 98.67 True relocation, inconsistency = -3170453 16546262 16549422 20515818 20518980 NC_060942.1 NC_000018.10 98.42 True relocation, inconsistency = -536628 16012858 16015928 20519044 20522115 NC_060942.1 NC_000018.10 97.72 True relocation, inconsistency = 1768882 17788648 17791660 20525953 20528966 NC_060942.1 NC_000018.10 97.71 True relocation, inconsistency = -539778 17251883 17256936 20528967 20534020 NC_060942.1 NC_000018.10 98.73 True relocation, inconsistency = 2101684 19358907 19372423 20534307 20547994 NC_060942.1 NC_000018.10 97.55 True relocation, inconsistency = -2277183 17095714 17097831 20548468 20550585 NC_060942.1 NC_000018.10 99.01 True relocation, inconsistency = -271754 16826078 16828849 20550586 20553357 NC_060942.1 NC_000018.10 98.94 True relocation, inconsistency = 1430615 18259465 18265500 20553358 20559224 NC_060942.1 NC_000018.10 95.68 True relocation, inconsistency = 2049205 20314706 20316252 20559225 20560773 NC_060942.1 NC_000018.10 98.01 True relocation, scaffold gap is present, inconsistency = 4346987 15963776 15966952 20564714 20561540 NC_060942.1 NC_000018.10 99.78 True fake: scaffold gap size wrong estimation (local) 15945946 15957116 20582631 20571467 NC_060942.1 NC_000018.10 99.33 True relocation, scaffold gap is present, inconsistency = -5015663 20958641 20961496 20585600 20582744 NC_060942.1 NC_000018.10 98.81 True local misassembly 20941725 20957788 20601663 20585601 NC_060942.1 NC_000018.10 99.94 True local misassembly 20937349 20938832 20603147 20601664 NC_060942.1 NC_000018.10 99.66 True relocation, scaffold gap is present, inconsistency = 88683 21027695 21033400 20603327 20609031 NC_060942.1 NC_000018.10 98.86 True indel: indel (<= 5bp) 21033731 21037980 20609363 20613613 NC_060942.1 NC_000018.10 97.81 True local misassembly 21041384 21043660 20613614 20615891 NC_060942.1 NC_000018.10 98.73 True local misassembly 21046721 21053647 20615892 20622813 NC_060942.1 NC_000018.10 99.22 True local misassembly 21057051 21058908 20622814 20624671 NC_060942.1 NC_000018.10 99.78 True fake: scaffold gap size wrong estimation (local) 21059080 21061913 20625138 20627972 NC_060942.1 NC_000018.10 99.44 True local misassembly 21065316 21068970 20627973 20631627 NC_060942.1 NC_000018.10 98.66 True relocation, inconsistency = -26535 21046707 21051751 20635899 20640943 NC_060942.1 NC_000018.10 98.85 True relocation, scaffold gap is present, inconsistency = 18823 21074265 21078152 20644634 20648522 NC_060942.1 NC_000018.10 99.23 True local misassembly 21079309 21082112 20648832 20651649 NC_060942.1 NC_000018.10 96.1 True fake: not a misassembly (possible transposable element) 21070797 21075852 20653366 20658420 NC_060942.1 NC_000018.10 99.51 True fake: not a misassembly (possible transposable element) 21094104 21106321 20662053 20674274 NC_060942.1 NC_000018.10 98.4 True relocation, inconsistency = -15648 21091897 21093291 20675498 20676890 NC_060942.1 NC_000018.10 95.13 True local misassembly 21093292 21095719 20682857 20685282 NC_060942.1 NC_000018.10 96.38 True fake: scaffold gap size wrong estimation (local) 21097173 21104490 20688972 20696289 NC_060942.1 NC_000018.10 98.96 True relocation, scaffold gap is present, inconsistency = -138971 20965620 20966129 20696390 20696898 NC_060942.1 NC_000018.10 95.69 True local misassembly 20966471 20969869 20696899 20700299 NC_060942.1 NC_000018.10 95.59 True local misassembly 20970211 20973080 20700300 20703165 NC_060942.1 NC_000018.10 96.03 True local misassembly 20974807 20975892 20703700 20704785 NC_060942.1 NC_000018.10 95.67 True local misassembly 20976742 20980422 20704786 20708468 NC_060942.1 NC_000018.10 95.66 True local misassembly 20981270 20988416 20708979 20716122 NC_060942.1 NC_000018.10 95.31 True local misassembly 20988758 20990828 20716123 20718196 NC_060942.1 NC_000018.10 95.71 True local misassembly 20990829 20995602 20719049 20723821 NC_060942.1 NC_000018.10 95.87 True local misassembly 20995603 20998070 20724502 20726969 NC_060942.1 NC_000018.10 95.99 True local misassembly 21001842 21005093 20729554 20732811 NC_060942.1 NC_000018.10 95.03 True relocation, inconsistency = -46095 20960124 20961417 20733937 20735230 NC_060942.1 NC_000018.10 96.29 True fake: scaffold gap size wrong estimation (local) 20961418 20968541 20736181 20743298 NC_060942.1 NC_000018.10 96.07 True local misassembly 20968542 20971741 20744149 20747345 NC_060942.1 NC_000018.10 98.44 True fake: scaffold gap size wrong estimation (local) 20973060 20975859 20748095 20750892 NC_060942.1 NC_000018.10 97.61 True fake: scaffold gap size wrong estimation (local) 20975860 20995423 20752551 20772121 NC_060942.1 NC_000018.10 96.94 True local misassembly 20995424 20998146 20773143 20775864 NC_060942.1 NC_000018.10 98.35 True local misassembly 20998147 20998708 20778754 20779315 NC_060942.1 NC_000018.10 99.11 True local misassembly 20998709 21013318 20781188 20795811 NC_060942.1 NC_000018.10 95.93 True indel: indel (<= 5bp) 21013581 21015546 20796077 20798045 NC_060942.1 NC_000018.10 95.53 True local misassembly 21024095 21024734 20805462 20806101 NC_060942.1 NC_000018.10 95.0 True inversion, scaffold gap is present 21026517 21029391 20816057 20813185 NC_060942.1 NC_000018.10 99.76 True local misassembly 21010502 21025166 20830722 20816058 NC_060942.1 NC_000018.10 99.93 True fake: scaffold gap size wrong estimation (local) 21009440 21010501 20832566 20831503 NC_060942.1 NC_000018.10 95.68 True local misassembly 21005605 21008585 20835547 20832567 NC_060942.1 NC_000018.10 99.97 True fake: scaffold gap size wrong estimation (local) 21004962 21005568 20836202 20835584 NC_060942.1 NC_000018.10 97.9 True local misassembly 20999610 21003093 20839686 20836203 NC_060942.1 NC_000018.10 98.79 True relocation, scaffold gap is present, inconsistency = 21663 21105036 47160482 20919966 46969788 NC_060942.1 NC_000018.10 99.71 True fake: scaffold gap size wrong estimation (local) 47210200 54739719 47019932 54536574 NC_060942.1 NC_000018.10 99.61 True fake: scaffold gap size wrong estimation (local) 54740638 60784227 54537529 60581298 NC_060942.1 NC_000018.10 99.66 True indel: stretch of mismatches 60784295 80534745 60581366 80258301 NC_060942.1 NC_000018.10 99.08 True indel: indel (> 5bp) 80535014 80539084 80258724 80262922 NC_060942.1 NC_000018.10 96.06 True CONTIG NC_000018.10 80373285 misassembled 10984 4494848 60001 4511363 NC_060943.1 NC_000019.10 98.35 True indel: indel (> 5bp) 4495409 14341713 4511726 14215051 NC_060943.1 NC_000019.10 97.9 True indel: indel (> 5bp) 14341857 15801597 14215052 15676387 NC_060943.1 NC_000019.10 99.1 True local misassembly 15802098 15832267 15677465 15707370 NC_060943.1 NC_000019.10 98.59 True local misassembly 15835139 16065629 15708594 15933280 NC_060943.1 NC_000019.10 96.74 True local misassembly 16066635 20756909 15933906 20618973 NC_060943.1 NC_000019.10 99.64 True indel: indel (> 5bp) 20757140 23100514 20619179 22957999 NC_060943.1 NC_000019.10 99.5 True local misassembly 23100584 24599148 22960118 24448980 NC_060943.1 NC_000019.10 98.25 True relocation, scaffold gap is present, inconsistency = -49696 24599456 24606229 24498984 24505767 NC_060943.1 NC_000019.10 96.49 True indel: indel (> 5bp) 24606401 24609263 24505768 24508630 NC_060943.1 NC_000019.10 97.31 True indel: indel (> 5bp) 24609435 24612361 24508631 24511558 NC_060943.1 NC_000019.10 96.82 True indel: indel (> 5bp) 24612533 24615522 24511559 24514551 NC_060943.1 NC_000019.10 97.16 True indel: indel (> 5bp) 24615693 24618528 24514552 24517387 NC_060943.1 NC_000019.10 97.32 True indel: indel (> 5bp) 24618700 24621606 24517388 24520293 NC_060943.1 NC_000019.10 96.56 True indel: indel (> 5bp) 24621777 24624414 24520294 24522933 NC_060943.1 NC_000019.10 97.12 True indel: indel (> 5bp) 24624585 24630109 24522934 24528458 NC_060943.1 NC_000019.10 97.95 True indel: stretch of mismatches 24630435 24636411 24528784 24534763 NC_060943.1 NC_000019.10 96.79 True indel: indel (<= 5bp) 24636575 24677810 24534930 24576623 NC_060943.1 NC_000019.10 95.74 True local misassembly 24683961 24689404 24586471 24591916 NC_060943.1 NC_000019.10 95.98 True local misassembly 24691808 24694035 24594119 24596349 NC_060943.1 NC_000019.10 95.83 True local misassembly 24696440 24707875 24598553 24609996 NC_060943.1 NC_000019.10 95.65 True local misassembly 24707876 24709590 24610508 24612224 NC_060943.1 NC_000019.10 96.27 True local misassembly 24709591 24713487 24612736 24616633 NC_060943.1 NC_000019.10 95.56 True local misassembly 24713488 24728482 24617146 24632151 NC_060943.1 NC_000019.10 96.13 True local misassembly 24728483 24746482 24632664 24650673 NC_060943.1 NC_000019.10 95.6 True indel: indel (> 5bp) 24746483 24750477 24650845 24654846 NC_060943.1 NC_000019.10 95.88 True local misassembly 24750478 24755536 24655189 24660250 NC_060943.1 NC_000019.10 96.19 True indel: stretch of mismatches 24755723 24986364 24660437 24891086 NC_060943.1 NC_000019.10 96.19 True relocation, scaffold gap is present, inconsistency = 814838 25806007 25808423 24895891 24898308 NC_060943.1 NC_000019.10 96.53 True fake: scaffold gap size wrong estimation (local) 25814662 25818479 24904772 24908589 NC_060943.1 NC_000019.10 99.97 True translocation, scaffold gap is present 48452472 48454527 24931978 24934035 NC_060929.1 NC_000019.10 95.87 True relocation, inconsistency = 1064361 49520911 49521790 24936058 24936938 NC_060929.1 NC_000019.10 96.14 True translocation 121834089 121834827 24948301 24949039 NC_060925.1 NC_000019.10 96.08 True translocation 28855377 28862102 24951660 24958389 NC_060943.1 NC_000019.10 95.37 True relocation, inconsistency = 143485 29005588 29006148 24958390 24958950 NC_060943.1 NC_000019.10 95.03 True translocation 49431861 49435355 24975466 24978961 NC_060929.1 NC_000019.10 95.68 True relocation, inconsistency = 96488 49537125 49538604 24984243 24985722 NC_060929.1 NC_000019.10 95.05 True relocation, inconsistency = -87664 49450941 49454376 24985723 24989164 NC_060929.1 NC_000019.10 95.47 True relocation, inconsistency = -2285156 47172924 47174625 24992868 24994570 NC_060929.1 NC_000019.10 96.07 True translocation 123446832 123447969 24994848 24995985 NC_060925.1 NC_000019.10 96.05 True local misassembly 123453185 123454380 25001204 25002401 NC_060925.1 NC_000019.10 96.41 True relocation, inconsistency = -1475463 121996452 121997210 25019936 25020694 NC_060925.1 NC_000019.10 95.78 True translocation 29738266 29738964 25024433 25025131 NC_060943.1 NC_000019.10 99.0 True relocation, inconsistency = -3862663 25888065 25890102 25036895 25038935 NC_060943.1 NC_000019.10 96.0 True relocation, inconsistency = 47469 25937572 25940791 25038936 25042156 NC_060943.1 NC_000019.10 95.22 True translocation 49401745 49403359 25043580 25045194 NC_060929.1 NC_000019.10 96.16 True relocation, inconsistency = -131480 49281181 49283559 25054496 25056872 NC_060929.1 NC_000019.10 95.04 True relocation, inconsistency = 157965 49448201 49450407 25063549 25065757 NC_060929.1 NC_000019.10 96.47 True local misassembly 49450747 49452600 25065758 25067616 NC_060929.1 NC_000019.10 95.37 True translocation 123201444 123202231 25070695 25071482 NC_060925.1 NC_000019.10 96.57 True translocation 49415895 49418486 25071679 25074272 NC_060929.1 NC_000019.10 95.59 True translocation 27811094 27815456 25074273 25078641 NC_060943.1 NC_000019.10 95.06 True translocation 126285558 126286306 25078642 25079390 NC_060925.1 NC_000019.10 96.04 True relocation, inconsistency = -390065 125898394 125902191 25081543 25085345 NC_060925.1 NC_000019.10 95.42 True local misassembly 125902531 125903584 25085346 25086400 NC_060925.1 NC_000019.10 96.97 True translocation 48816685 48817674 25089767 25090757 NC_060929.1 NC_000019.10 96.17 True local misassembly 48817675 48819384 25091097 25092806 NC_060929.1 NC_000019.10 95.67 True local misassembly 48822429 48824194 25095856 25097624 NC_060929.1 NC_000019.10 96.33 True translocation 25934314 25938092 25098243 25102020 NC_060943.1 NC_000019.10 95.19 True relocation, inconsistency = 3303192 29248006 29250200 25108742 25110937 NC_060943.1 NC_000019.10 95.72 True translocation 124155133 124155852 25124412 25123694 NC_060925.1 NC_000019.10 97.01 True translocation 49400647 49402145 25124413 25125911 NC_060929.1 NC_000019.10 95.73 True local misassembly 49404040 49405235 25127806 25129001 NC_060929.1 NC_000019.10 97.51 True translocation 124047992 124049315 25129002 25130326 NC_060925.1 NC_000019.10 95.55 True relocation, inconsistency = -203248 123850314 123851874 25134573 25136133 NC_060925.1 NC_000019.10 97.18 True local misassembly 123852215 123853806 25136134 25137725 NC_060925.1 NC_000019.10 96.92 True translocation 49432776 49435150 25138883 25141258 NC_060929.1 NC_000019.10 95.45 True relocation, inconsistency = -1958597 47485880 47489279 25150585 25153988 NC_060929.1 NC_000019.10 95.06 True relocation, inconsistency = -369378 47129766 47130647 25163853 25164733 NC_060929.1 NC_000019.10 96.16 True translocation 125926163 125929067 25164734 25167636 NC_060925.1 NC_000019.10 95.11 True relocation, inconsistency = 1085881 124835514 124839351 25172402 25168567 NC_060925.1 NC_000019.10 95.1 True translocation 25932877 25933914 25181107 25182146 NC_060943.1 NC_000019.10 95.29 True relocation, inconsistency = 150625 26092959 26093820 25190566 25191427 NC_060943.1 NC_000019.10 95.37 True translocation 124115197 124116275 25196212 25197289 NC_060925.1 NC_000019.10 96.66 True translocation 27330810 27333977 25203157 25206326 NC_060943.1 NC_000019.10 95.93 True translocation 123973554 123980803 25206859 25214106 NC_060925.1 NC_000019.10 95.56 True relocation, inconsistency = -10877 123978788 123980910 25222968 25225091 NC_060925.1 NC_000019.10 96.85 True relocation, inconsistency = -478248 123504143 123505806 25226572 25228239 NC_060925.1 NC_000019.10 95.62 True translocation 29669335 29670698 25234923 25236286 NC_060943.1 NC_000019.10 97.36 True relocation, inconsistency = -38747 29647068 29647917 25251403 25252252 NC_060943.1 NC_000019.10 95.33 True translocation 49407778 49409816 25252253 25254294 NC_060929.1 NC_000019.10 95.64 True local misassembly 49409817 49411472 25254635 25256290 NC_060929.1 NC_000019.10 95.53 True translocation 29653180 29654727 25257182 25258732 NC_060943.1 NC_000019.10 96.32 True local misassembly 29654728 29655600 25259074 25259946 NC_060943.1 NC_000019.10 95.58 True translocation 125396656 125399288 25262578 25259947 NC_060925.1 NC_000019.10 95.18 True translocation 47230614 47231733 25264457 25265576 NC_060929.1 NC_000019.10 97.23 True translocation 124122447 124124513 25271119 25273186 NC_060925.1 NC_000019.10 95.79 True translocation 48354630 48355995 25274007 25275374 NC_060929.1 NC_000019.10 95.69 True local misassembly 48355996 48357798 25276056 25277858 NC_060929.1 NC_000019.10 96.06 True translocation 29299181 29302055 25293902 25296778 NC_060943.1 NC_000019.10 96.0 True translocation 49494374 49495427 25303204 25304258 NC_060929.1 NC_000019.10 96.02 True local misassembly 49495428 49497081 25304599 25306254 NC_060929.1 NC_000019.10 95.11 True translocation 126272830 126274257 25315789 25317216 NC_060925.1 NC_000019.10 95.52 True relocation, inconsistency = -4215936 122060409 122064940 25319304 25323838 NC_060925.1 NC_000019.10 95.28 True relocation, inconsistency = 163538 122251708 122257234 25347068 25352598 NC_060925.1 NC_000019.10 95.99 True relocation, inconsistency = 3878542 126136592 126137627 25353414 25354449 NC_060925.1 NC_000019.10 95.24 True relocation, inconsistency = -271963 125865665 125871027 25354450 25359810 NC_060925.1 NC_000019.10 95.14 True translocation 47629412 47632055 25359811 25362454 NC_060929.1 NC_000019.10 96.07 True relocation, inconsistency = 1791740 49424081 49425374 25362740 25364035 NC_060929.1 NC_000019.10 96.38 True relocation, inconsistency = -9870 49438446 49439027 25386977 25387558 NC_060929.1 NC_000019.10 97.77 True local misassembly 49439368 49440600 25387559 25388794 NC_060929.1 NC_000019.10 96.44 True relocation, inconsistency = 83244 49524988 49526688 25389938 25391637 NC_060929.1 NC_000019.10 95.24 True local misassembly 49526689 49527552 25391977 25392839 NC_060929.1 NC_000019.10 95.6 True relocation, inconsistency = -2385393 47142590 47143333 25393270 25394013 NC_060929.1 NC_000019.10 96.51 True local misassembly 47143674 47144534 25394014 25394874 NC_060929.1 NC_000019.10 96.28 True relocation, inconsistency = 1797320 48942195 48942966 25395215 25395986 NC_060929.1 NC_000019.10 97.15 True local misassembly 48943306 48944793 25395987 25397474 NC_060929.1 NC_000019.10 96.17 True local misassembly 48946737 48948116 25399418 25400797 NC_060929.1 NC_000019.10 96.16 True translocation 29250600 29251493 25406086 25406983 NC_060943.1 NC_000019.10 95.88 True translocation 49086075 49089657 25410659 25414242 NC_060929.1 NC_000019.10 95.01 True translocation 25908795 25911473 25425918 25428597 NC_060943.1 NC_000019.10 95.78 True local misassembly 25911812 25913367 25428598 25430153 NC_060943.1 NC_000019.10 95.76 True translocation 47129768 47130773 25432419 25433420 NC_060929.1 NC_000019.10 97.12 True translocation 29247054 29250380 25433451 25436784 NC_060943.1 NC_000019.10 95.17 True local misassembly 29250716 29251535 25436785 25437605 NC_060943.1 NC_000019.10 97.08 True translocation 122415102 122417109 25440768 25442772 NC_060925.1 NC_000019.10 95.42 True local misassembly 122417450 122418274 25442773 25443596 NC_060925.1 NC_000019.10 97.58 True relocation, inconsistency = 2318361 124736994 124739013 25445975 25443955 NC_060925.1 NC_000019.10 95.2 True translocation 49378569 49381986 25445997 25449422 NC_060929.1 NC_000019.10 95.1 True local misassembly 49381987 49383267 25449765 25451046 NC_060929.1 NC_000019.10 95.24 True translocation 29147981 29148631 25466273 25466922 NC_060943.1 NC_000019.10 95.85 True relocation, inconsistency = -3250500 25930401 25933416 25499192 25502208 NC_060943.1 NC_000019.10 95.13 True translocation 125082573 125084569 25537726 25535730 NC_060925.1 NC_000019.10 96.1 True translocation 29643671 29645465 25553409 25555199 NC_060943.1 NC_000019.10 95.82 True relocation, inconsistency = 11540 29674727 29676176 25572921 25574375 NC_060943.1 NC_000019.10 95.33 True local misassembly 29676517 29677464 25574376 25575324 NC_060943.1 NC_000019.10 95.89 True translocation 49510376 49511734 25584518 25585881 NC_060929.1 NC_000019.10 95.45 True translocation 123841804 123843031 25586864 25588094 NC_060925.1 NC_000019.10 95.04 True local misassembly 123843032 123843950 25588436 25589354 NC_060925.1 NC_000019.10 96.19 True relocation, inconsistency = 63561 123907620 123909947 25589463 25591792 NC_060925.1 NC_000019.10 96.22 True translocation 49451077 49451764 25594885 25595574 NC_060929.1 NC_000019.10 96.96 True local misassembly 49452104 49453594 25595575 25597067 NC_060929.1 NC_000019.10 95.58 True local misassembly 49453595 49454314 25597747 25598466 NC_060929.1 NC_000019.10 96.67 True relocation, inconsistency = -1768298 47687809 47688546 25600259 25600997 NC_060929.1 NC_000019.10 97.83 True local misassembly 47690055 47691829 25601828 25603603 NC_060929.1 NC_000019.10 95.89 True local misassembly 47696203 47698983 25607978 25610759 NC_060929.1 NC_000019.10 95.33 True translocation 25931898 25932780 25612366 25613248 NC_060943.1 NC_000019.10 95.83 True local misassembly 25930401 25931612 25613249 25614462 NC_060943.1 NC_000019.10 95.3 True local misassembly 25931953 25933488 25614463 25615998 NC_060943.1 NC_000019.10 95.25 True translocation 124877929 124878444 25626134 25625619 NC_060925.1 NC_000019.10 96.32 True indel: indel (> 5bp) 124876989 124877899 25627043 25626135 NC_060925.1 NC_000019.10 96.05 True translocation 47618920 47619598 25633270 25633948 NC_060929.1 NC_000019.10 97.2 True local misassembly 47619599 47620111 25634288 25634800 NC_060929.1 NC_000019.10 95.91 True translocation 25944709 25945894 25637036 25638220 NC_060943.1 NC_000019.10 95.65 True translocation 122923785 122925311 25638221 25639747 NC_060925.1 NC_000019.10 95.55 True local misassembly 122925652 122927441 25639748 25641537 NC_060925.1 NC_000019.10 95.64 True local misassembly 122932466 122933887 25646220 25647640 NC_060925.1 NC_000019.10 96.34 True relocation, inconsistency = 969065 123903904 123905388 25648592 25650074 NC_060925.1 NC_000019.10 96.9 True translocation 48696054 48697071 25650769 25651786 NC_060929.1 NC_000019.10 96.17 True local misassembly 48697412 48698092 25651787 25652468 NC_060929.1 NC_000019.10 96.19 True local misassembly 48698093 48699498 25652807 25654208 NC_060929.1 NC_000019.10 95.87 True translocation 122032183 122033714 25655651 25657185 NC_060925.1 NC_000019.10 96.55 True local misassembly 122034055 122035250 25657186 25658378 NC_060925.1 NC_000019.10 95.65 True relocation, inconsistency = 215953 122253646 122254634 25660821 25661808 NC_060925.1 NC_000019.10 96.26 True local misassembly 122254975 122256638 25661809 25663468 NC_060925.1 NC_000019.10 95.31 True translocation 28518014 28518556 25678673 25679215 NC_060943.1 NC_000019.10 97.61 True translocation 49456496 49458034 25685747 25687286 NC_060929.1 NC_000019.10 95.91 True relocation, inconsistency = 82573 49541470 49542383 25688149 25689062 NC_060929.1 NC_000019.10 95.51 True translocation 123913447 123914410 25689226 25690189 NC_060925.1 NC_000019.10 96.68 True translocation 49430877 49432078 25710249 25711449 NC_060929.1 NC_000019.10 95.09 True local misassembly 49432079 49434614 25711790 25714324 NC_060929.1 NC_000019.10 96.14 True translocation 29682922 29684620 25715006 25716704 NC_060943.1 NC_000019.10 95.59 True local misassembly 29684960 29686781 25716705 25718526 NC_060943.1 NC_000019.10 95.06 True translocation 48187446 48189176 25720754 25722487 NC_060929.1 NC_000019.10 95.21 True local misassembly 48189517 48190924 25722488 25723897 NC_060929.1 NC_000019.10 95.18 True translocation 29695879 29697929 25728994 25731046 NC_060943.1 NC_000019.10 95.62 True translocation 49330877 49332688 25746153 25747967 NC_060929.1 NC_000019.10 95.48 True translocation 29675955 29678013 25753248 25755305 NC_060943.1 NC_000019.10 95.24 True translocation 126261786 126263333 25764761 25766310 NC_060925.1 NC_000019.10 95.23 True translocation 49229083 49229761 25767005 25767685 NC_060929.1 NC_000019.10 96.48 True local misassembly 49229762 49231183 25768026 25769448 NC_060929.1 NC_000019.10 95.5 True translocation 122026243 122028712 25770031 25772501 NC_060925.1 NC_000019.10 95.27 True relocation, inconsistency = 1419229 123448426 123449423 25772986 25773983 NC_060925.1 NC_000019.10 95.69 True local misassembly 123449764 123451290 25773984 25775508 NC_060925.1 NC_000019.10 95.17 True translocation 48696061 48698097 25775509 25777545 NC_060929.1 NC_000019.10 95.14 True local misassembly 48698098 48699458 25777885 25779247 NC_060929.1 NC_000019.10 95.89 True local misassembly 48700132 48700993 25779920 25780781 NC_060929.1 NC_000019.10 96.52 True local misassembly 48701331 48702233 25780782 25781684 NC_060929.1 NC_000019.10 95.79 True relocation, inconsistency = -1282905 47419628 47420295 25781984 25782651 NC_060929.1 NC_000019.10 96.11 True local misassembly 47420296 47421175 25782992 25783871 NC_060929.1 NC_000019.10 96.84 True translocation 123987193 123988454 25783872 25785133 NC_060925.1 NC_000019.10 96.43 True local misassembly 123988455 123990555 25785474 25787574 NC_060925.1 NC_000019.10 95.24 True local misassembly 123990556 123992133 25787915 25789496 NC_060925.1 NC_000019.10 95.13 True relocation, inconsistency = -1663503 122329253 122330667 25790119 25791528 NC_060925.1 NC_000019.10 95.48 True translocation 49433083 49434272 25791975 25793164 NC_060929.1 NC_000019.10 96.22 True local misassembly 49434613 49436020 25793165 25794571 NC_060929.1 NC_000019.10 95.45 True translocation 126209304 126210688 25797216 25798601 NC_060925.1 NC_000019.10 96.39 True local misassembly 126210689 126212371 25798942 25800626 NC_060925.1 NC_000019.10 95.73 True translocation 47230973 47232024 25800627 25801678 NC_060929.1 NC_000019.10 97.35 True local misassembly 47232365 47233490 25801679 25802808 NC_060929.1 NC_000019.10 95.13 True translocation 29676562 29678628 25811960 25814027 NC_060943.1 NC_000019.10 95.31 True translocation 125091478 125092561 25816003 25814921 NC_060925.1 NC_000019.10 95.94 True relocation, inconsistency = 3093073 121976179 121977394 25837014 25838229 NC_060925.1 NC_000019.10 96.79 True relocation, inconsistency = 2573529 124559440 124561025 25848331 25846746 NC_060925.1 NC_000019.10 95.08 True translocation 47617397 47618328 25857064 25857995 NC_060929.1 NC_000019.10 96.89 True translocation 122255201 122256704 25864080 25865584 NC_060925.1 NC_000019.10 95.42 True local misassembly 122256705 122258265 25865925 25867485 NC_060925.1 NC_000019.10 96.41 True relocation, inconsistency = -333888 121924961 121926411 25868069 25869521 NC_060925.1 NC_000019.10 96.7 True relocation, inconsistency = 1367905 123301231 123301939 25876436 25877145 NC_060925.1 NC_000019.10 96.34 True translocation 26001827 26003879 25877491 25879544 NC_060943.1 NC_000019.10 95.42 True translocation 124045660 124049336 25879545 25883222 NC_060925.1 NC_000019.10 95.03 True relocation, inconsistency = 1929766 125980831 125982160 25884951 25886280 NC_060925.1 NC_000019.10 97.15 True indel: stretch of mismatches 125982538 125984099 25886658 25888219 NC_060925.1 NC_000019.10 95.39 True translocation 47501861 47502556 25900056 25900751 NC_060929.1 NC_000019.10 95.55 True translocation 124159352 124160039 25902636 25901949 NC_060925.1 NC_000019.10 95.06 True translocation 47607508 47608858 25905798 25907148 NC_060929.1 NC_000019.10 96.08 True translocation 29633275 29634716 25909200 25910645 NC_060943.1 NC_000019.10 95.16 True translocation 124256440 124257393 25913213 25912259 NC_060925.1 NC_000019.10 96.02 True translocation 28409934 28411491 25918274 25919835 NC_060943.1 NC_000019.10 95.97 True translocation 49510376 49511724 25922491 25923841 NC_060929.1 NC_000019.10 96.0 True translocation 29327705 29328294 25936575 25937164 NC_060943.1 NC_000019.10 97.29 True translocation 49060618 49062074 25953780 25955241 NC_060929.1 NC_000019.10 96.1 True relocation, inconsistency = -905721 48158132 48158909 25957020 25957797 NC_060929.1 NC_000019.10 95.12 True fake: not a misassembly (possible transposable element) 48785403 48786886 25958518 25960001 NC_060929.1 NC_000019.10 95.62 True fake: not a misassembly (possible transposable element) 48161839 48163514 25960388 25962065 NC_060929.1 NC_000019.10 95.71 True translocation 125970649 125972278 25962457 25964087 NC_060925.1 NC_000019.10 95.03 True translocation 29648602 29649678 25997941 25999018 NC_060943.1 NC_000019.10 96.66 True translocation 48188184 48189215 26012922 26013955 NC_060929.1 NC_000019.10 96.71 True local misassembly 48189556 48190999 26013956 26015402 NC_060929.1 NC_000019.10 95.85 True translocation 29713456 29715991 26025103 26027637 NC_060943.1 NC_000019.10 95.74 True translocation 122267345 122270223 26031218 26034098 NC_060925.1 NC_000019.10 95.52 True translocation 49480813 49482171 26112839 26114197 NC_060929.1 NC_000019.10 96.03 True local misassembly 49482852 49484080 26114878 26116106 NC_060929.1 NC_000019.10 96.01 True translocation 123718634 123720842 26116748 26118956 NC_060925.1 NC_000019.10 96.2 True translocation 49419022 49420051 26120692 26121719 NC_060929.1 NC_000019.10 96.12 True translocation 123911856 123913339 26122345 26123829 NC_060925.1 NC_000019.10 95.02 True local misassembly 123913340 123915045 26124170 26125873 NC_060925.1 NC_000019.10 96.42 True translocation 49424081 49425119 26126428 26127469 NC_060929.1 NC_000019.10 95.49 True local misassembly 49425460 49426127 26127470 26128137 NC_060929.1 NC_000019.10 97.01 True local misassembly 49426128 49427404 26128479 26129753 NC_060929.1 NC_000019.10 96.16 True translocation 25908833 25910576 26167051 26168796 NC_060943.1 NC_000019.10 96.11 True translocation 49427964 49429034 26176030 26177101 NC_060929.1 NC_000019.10 95.8 True translocation 25964197 25964905 26183675 26184383 NC_060943.1 NC_000019.10 95.77 True local misassembly 25968474 25969026 26187614 26188166 NC_060943.1 NC_000019.10 96.56 True translocation 48997397 48999064 26188805 26190472 NC_060929.1 NC_000019.10 95.32 True local misassembly 48999065 48999900 26190813 26191651 NC_060929.1 NC_000019.10 97.97 True relocation, inconsistency = -809241 48191555 48192269 26192547 26193262 NC_060929.1 NC_000019.10 96.51 True translocation 29689862 29690689 26207479 26208306 NC_060943.1 NC_000019.10 95.89 True translocation 124216918 124217754 26218560 26217724 NC_060925.1 NC_000019.10 95.58 True local misassembly 124205690 124207237 26229464 26227915 NC_060925.1 NC_000019.10 96.52 True relocation, inconsistency = 2085041 126293235 126293896 26230421 26231083 NC_060925.1 NC_000019.10 95.55 True relocation, inconsistency = 2013406 124277358 124279828 26233554 26231084 NC_060925.1 NC_000019.10 96.68 True relocation, inconsistency = 2410955 121857474 121858338 26241619 26242485 NC_060925.1 NC_000019.10 97.12 True translocation 25952329 25954152 26242841 26244666 NC_060943.1 NC_000019.10 96.55 True relocation, inconsistency = 3676560 29633718 29634665 26247672 26248618 NC_060943.1 NC_000019.10 96.52 True local misassembly 29635005 29638106 26248619 26251722 NC_060943.1 NC_000019.10 95.43 True translocation 49530911 49532125 26253862 26255076 NC_060929.1 NC_000019.10 95.14 True relocation, inconsistency = -263291 49271214 49272940 26257456 26259183 NC_060929.1 NC_000019.10 96.99 True local misassembly 49272941 49273915 26259523 26260501 NC_060929.1 NC_000019.10 95.3 True local misassembly 49274255 49274959 26260502 26261207 NC_060929.1 NC_000019.10 95.47 True translocation 122198008 122199210 26269651 26270855 NC_060925.1 NC_000019.10 97.43 True local misassembly 122199552 122200824 26270856 26272130 NC_060925.1 NC_000019.10 96.0 True translocation 48638638 48641693 26272748 26275807 NC_060929.1 NC_000019.10 95.42 True relocation, inconsistency = 716142 49361604 49363296 26279576 26281270 NC_060929.1 NC_000019.10 95.1 True local misassembly 49363637 49364622 26281271 26282256 NC_060929.1 NC_000019.10 96.15 True relocation, inconsistency = -1981745 47385613 47386630 26284992 26286009 NC_060929.1 NC_000019.10 96.27 True local misassembly 47386972 47387973 26286010 26287012 NC_060929.1 NC_000019.10 95.81 True translocation 123362199 123363359 26288368 26289528 NC_060925.1 NC_000019.10 96.04 True translocation 47756692 47758101 26290103 26291512 NC_060929.1 NC_000019.10 95.11 True relocation, inconsistency = 1694574 49454315 49456739 26293152 26295579 NC_060929.1 NC_000019.10 95.14 True local misassembly 49457080 49457709 26295580 26296210 NC_060929.1 NC_000019.10 95.35 True relocation, inconsistency = -1045668 48412042 48413332 26296211 26297501 NC_060929.1 NC_000019.10 95.66 True translocation 125365123 125366206 26299669 26298587 NC_060925.1 NC_000019.10 95.02 True relocation, inconsistency = 1910537 123445676 123446506 26307749 26308580 NC_060925.1 NC_000019.10 97.84 True relocation, inconsistency = 684522 124134441 124135110 26312312 26311642 NC_060925.1 NC_000019.10 95.11 True translocation 49418621 49420083 26312313 26313777 NC_060929.1 NC_000019.10 96.11 True local misassembly 49420855 49422043 26314548 26315735 NC_060929.1 NC_000019.10 95.71 True relocation, inconsistency = -2177127 47247475 47248349 26318294 26319169 NC_060929.1 NC_000019.10 96.69 True translocation 123748685 123751626 26322497 26325439 NC_060925.1 NC_000019.10 95.01 True translocation 29641292 29644166 26340714 26343586 NC_060943.1 NC_000019.10 96.0 True translocation 48294496 48295174 26352445 26353123 NC_060929.1 NC_000019.10 96.76 True translocation 125976056 125978036 26385239 26387222 NC_060925.1 NC_000019.10 95.51 True local misassembly 125978372 125979711 26387223 26388566 NC_060925.1 NC_000019.10 96.58 True translocation 48160671 48162600 26389515 26391441 NC_060929.1 NC_000019.10 95.23 True translocation 124997691 124999154 26392904 26391442 NC_060925.1 NC_000019.10 96.82 True translocation 48880868 48882310 26403079 26404521 NC_060929.1 NC_000019.10 95.29 True local misassembly 48882651 48883255 26404522 26405129 NC_060929.1 NC_000019.10 96.55 True local misassembly 48883597 48884856 26405130 26406391 NC_060929.1 NC_000019.10 96.35 True local misassembly 48884907 48885620 26407121 26407834 NC_060929.1 NC_000019.10 96.64 True local misassembly 48885621 48886685 26408175 26409240 NC_060929.1 NC_000019.10 95.78 True translocation 28691417 28692009 26423348 26423939 NC_060943.1 NC_000019.10 96.63 True translocation 126292007 126293248 26435479 26436719 NC_060925.1 NC_000019.10 96.22 True local misassembly 126293249 126294388 26437061 26438203 NC_060925.1 NC_000019.10 96.24 True translocation 48619286 48620622 26446925 26448255 NC_060929.1 NC_000019.10 96.19 True translocation 29249915 29251493 26462074 26463658 NC_060943.1 NC_000019.10 95.65 True translocation 49456691 49458194 26464275 26465778 NC_060929.1 NC_000019.10 96.21 True translocation 123777614 123778290 26478209 26478885 NC_060925.1 NC_000019.10 98.82 True local misassembly 123778631 123779714 26478886 26479967 NC_060925.1 NC_000019.10 96.59 True relocation, inconsistency = 206988 123987200 123988720 26480465 26481986 NC_060925.1 NC_000019.10 95.99 True translocation 29633275 29636826 26495843 26499397 NC_060943.1 NC_000019.10 95.36 True translocation 49349085 49350372 26514606 26515893 NC_060929.1 NC_000019.10 96.2 True relocation, inconsistency = -2235211 47128060 47129758 26528792 26530495 NC_060929.1 NC_000019.10 95.83 True translocation 29631743 29633305 26547957 26549519 NC_060943.1 NC_000019.10 96.93 True local misassembly 29633645 29634616 26549520 26550491 NC_060943.1 NC_000019.10 96.91 True translocation 49362260 49363650 26552580 26553970 NC_060929.1 NC_000019.10 95.4 True relocation, inconsistency = -2209407 47157436 47158901 26557163 26558629 NC_060929.1 NC_000019.10 95.09 True translocation 122125804 122126855 26571092 26572138 NC_060925.1 NC_000019.10 95.34 True local misassembly 122126856 122128479 26572479 26574100 NC_060925.1 NC_000019.10 96.18 True translocation 47859598 47860324 26575612 26576338 NC_060929.1 NC_000019.10 96.15 True local misassembly 47866966 47867785 26582646 26583464 NC_060929.1 NC_000019.10 96.59 True relocation, inconsistency = 1500931 49369059 49373617 26583807 26588363 NC_060929.1 NC_000019.10 95.24 True local misassembly 49373957 49374955 26588364 26589363 NC_060929.1 NC_000019.10 95.3 True translocation 125886960 125889095 26591019 26593157 NC_060925.1 NC_000019.10 95.14 True translocation 47268373 47269676 26600131 26601435 NC_060929.1 NC_000019.10 95.56 True local misassembly 47270017 47271423 26601436 26602846 NC_060929.1 NC_000019.10 95.82 True relocation, inconsistency = -13256 47265640 47266319 26610319 26610998 NC_060929.1 NC_000019.10 96.47 True local misassembly 47266320 47269208 26611339 26614227 NC_060929.1 NC_000019.10 95.4 True local misassembly 47269548 47271482 26614228 26616163 NC_060929.1 NC_000019.10 95.4 True translocation 125978864 125982122 26626900 26630158 NC_060925.1 NC_000019.10 95.4 True relocation, inconsistency = -2631334 123360353 123362006 26639723 26641377 NC_060925.1 NC_000019.10 96.32 True translocation 47347405 47348224 26642814 26643632 NC_060929.1 NC_000019.10 95.37 True local misassembly 47348225 47349072 26643972 26644819 NC_060929.1 NC_000019.10 97.76 True relocation, inconsistency = 1832969 49193589 49195448 26656367 26658222 NC_060929.1 NC_000019.10 95.59 True relocation, inconsistency = 10695 49210619 49212466 26662698 26664544 NC_060929.1 NC_000019.10 95.56 True local misassembly 49214367 49216131 26666452 26668218 NC_060929.1 NC_000019.10 95.19 True translocation 126188112 126189609 26670161 26671655 NC_060925.1 NC_000019.10 96.73 True translocation 25961048 25963670 26673232 26675857 NC_060943.1 NC_000019.10 95.09 True translocation 49522958 49523631 26678465 26679138 NC_060929.1 NC_000019.10 98.52 True relocation, inconsistency = -1373168 48150801 48152410 26679476 26681082 NC_060929.1 NC_000019.10 95.47 True local misassembly 48152411 48153173 26681424 26682186 NC_060929.1 NC_000019.10 97.77 True local misassembly 48154197 48155373 26682532 26683710 NC_060929.1 NC_000019.10 96.27 True translocation 25937881 25938397 26687464 26687979 NC_060943.1 NC_000019.10 99.23 True translocation 47816772 47817832 26696767 26697829 NC_060929.1 NC_000019.10 97.18 True translocation 124054813 124055461 26701773 26702420 NC_060925.1 NC_000019.10 98.61 True local misassembly 124055462 124057175 26702761 26704473 NC_060925.1 NC_000019.10 95.27 True translocation 27270945 27271739 26704474 26705271 NC_060943.1 NC_000019.10 95.0 True translocation 47773667 47774750 26726054 26727141 NC_060929.1 NC_000019.10 96.51 True relocation, inconsistency = 1759820 49535260 49537368 26727831 26729941 NC_060929.1 NC_000019.10 95.17 True translocation 122550821 122554318 26731458 26734955 NC_060925.1 NC_000019.10 95.09 True relocation, inconsistency = -363353 122190966 122192047 26734956 26736039 NC_060925.1 NC_000019.10 96.28 True translocation 49511823 49512378 26738724 26739279 NC_060929.1 NC_000019.10 96.58 True local misassembly 49512379 49513268 26739620 26740510 NC_060929.1 NC_000019.10 97.42 True local misassembly 49513608 49514453 26740511 26741356 NC_060929.1 NC_000019.10 95.63 True relocation, inconsistency = -88675 49426121 49427527 26741699 26743103 NC_060929.1 NC_000019.10 95.31 True local misassembly 49427868 49429217 26743104 26744453 NC_060929.1 NC_000019.10 95.93 True relocation, inconsistency = -1589263 47849438 47851137 26753937 26755637 NC_060929.1 NC_000019.10 95.94 True translocation 123415770 123417673 26757174 26759079 NC_060925.1 NC_000019.10 96.27 True local misassembly 123418014 123419393 26759080 26760460 NC_060925.1 NC_000019.10 95.87 True translocation 29259921 29260999 26765499 26766576 NC_060943.1 NC_000019.10 95.46 True translocation 49474697 49476045 26783518 26784867 NC_060929.1 NC_000019.10 95.11 True local misassembly 49476386 49477011 26784868 26785493 NC_060929.1 NC_000019.10 98.24 True translocation 29662838 29665370 26786546 26789078 NC_060943.1 NC_000019.10 95.03 True translocation 122482393 122484800 26791365 26793769 NC_060925.1 NC_000019.10 95.22 True local misassembly 122485140 122486290 26793770 26794920 NC_060925.1 NC_000019.10 97.07 True relocation, inconsistency = -464752 122021539 122025025 26794921 26798410 NC_060925.1 NC_000019.10 96.02 True relocation, inconsistency = 1500811 123528411 123529531 26800985 26802104 NC_060925.1 NC_000019.10 95.63 True translocation 29720349 29721419 26802105 26803174 NC_060943.1 NC_000019.10 96.4 True translocation 47306766 47308449 26807821 26809504 NC_060929.1 NC_000019.10 95.96 True local misassembly 47308450 47309851 26809845 26811248 NC_060929.1 NC_000019.10 96.3 True local misassembly 47311184 47312769 26811900 26813490 NC_060929.1 NC_000019.10 95.73 True translocation 25910578 25911543 26815353 26816318 NC_060943.1 NC_000019.10 96.79 True local misassembly 25911885 25913027 26816319 26817462 NC_060943.1 NC_000019.10 95.63 True translocation 49394866 49395546 26821078 26821759 NC_060929.1 NC_000019.10 95.16 True local misassembly 49395547 49396954 26822100 26823503 NC_060929.1 NC_000019.10 95.6 True translocation 29671672 29673017 26824099 26825444 NC_060943.1 NC_000019.10 96.88 True translocation 123735768 123738304 26846534 26849073 NC_060925.1 NC_000019.10 95.94 True translocation 47968011 47969027 26861868 26862885 NC_060929.1 NC_000019.10 95.87 True relocation, inconsistency = -449498 47519531 47520210 26862887 26863567 NC_060929.1 NC_000019.10 95.45 True local misassembly 47520211 47521172 26863907 26864867 NC_060929.1 NC_000019.10 95.84 True local misassembly 47521513 47522281 26864868 26865636 NC_060929.1 NC_000019.10 96.23 True relocation, inconsistency = 1794148 49316743 49319455 26865950 26868664 NC_060929.1 NC_000019.10 95.29 True translocation 28411713 28413190 26871331 26872809 NC_060943.1 NC_000019.10 95.81 True translocation 49404040 49405762 26879201 26880925 NC_060929.1 NC_000019.10 95.42 True local misassembly 49405763 49407294 26881265 26882797 NC_060929.1 NC_000019.10 95.76 True relocation, inconsistency = 122309 49532125 49533547 26885319 26886742 NC_060929.1 NC_000019.10 95.44 True relocation, inconsistency = -98531 49436653 49438058 26888379 26889785 NC_060929.1 NC_000019.10 96.02 True local misassembly 49438399 49439368 26889786 26890756 NC_060929.1 NC_000019.10 95.98 True local misassembly 49442879 49443444 26894606 26895173 NC_060929.1 NC_000019.10 97.54 True local misassembly 49443445 49444150 26895513 26896217 NC_060929.1 NC_000019.10 97.03 True local misassembly 49444489 49445772 26896218 26897501 NC_060929.1 NC_000019.10 96.34 True translocation 29657735 29659179 26897518 26898962 NC_060943.1 NC_000019.10 95.16 True local misassembly 29659520 29661272 26898963 26900715 NC_060943.1 NC_000019.10 95.15 True translocation 121800820 121801785 26900958 26901924 NC_060925.1 NC_000019.10 95.55 True relocation, inconsistency = 4458463 126261687 126263254 26903363 26904935 NC_060925.1 NC_000019.10 95.61 True relocation, inconsistency = 1817292 124443473 124444394 26905851 26904936 NC_060925.1 NC_000019.10 95.68 True translocation 26205541 26206133 26909656 26910247 NC_060943.1 NC_000019.10 95.78 True translocation 49253884 49255423 26910803 26912342 NC_060929.1 NC_000019.10 96.95 True fake: not a misassembly (possible transposable element) 49576952 49577728 26913148 26913924 NC_060929.1 NC_000019.10 95.37 True fake: not a misassembly (possible transposable element) 49259326 49260166 26916248 26917088 NC_060929.1 NC_000019.10 96.43 True relocation, inconsistency = 320725 49585148 49586905 26921345 26923103 NC_060929.1 NC_000019.10 95.96 True relocation, inconsistency = -1447250 48140952 48142710 26924400 26926161 NC_060929.1 NC_000019.10 96.2 True translocation 125478572 125480195 26928938 26927314 NC_060925.1 NC_000019.10 95.02 True translocation 49132624 49136016 26929493 26932885 NC_060929.1 NC_000019.10 95.7 True relocation, inconsistency = -444383 48723558 48724430 26964810 26965683 NC_060929.1 NC_000019.10 95.65 True local misassembly 48724768 48725386 26965684 26966303 NC_060929.1 NC_000019.10 98.23 True relocation, inconsistency = 666860 49415931 49417350 26989988 26991408 NC_060929.1 NC_000019.10 96.69 True local misassembly 49417690 49418791 26991409 26992510 NC_060929.1 NC_000019.10 96.1 True local misassembly 49419132 49419784 26992511 26993165 NC_060929.1 NC_000019.10 97.4 True translocation 122033905 122035155 26997275 26998527 NC_060925.1 NC_000019.10 95.53 True local misassembly 122047009 122049286 27010644 27012921 NC_060925.1 NC_000019.10 96.27 True translocation 29633647 29634760 27027036 27028150 NC_060943.1 NC_000019.10 95.96 True translocation 49502222 49503239 27033834 27034851 NC_060929.1 NC_000019.10 96.37 True relocation, inconsistency = -93443 49422723 49424461 27047778 27049516 NC_060929.1 NC_000019.10 95.46 True translocation 26166526 26167959 27051818 27053253 NC_060943.1 NC_000019.10 95.75 True translocation 49214223 49215873 27058059 27059711 NC_060929.1 NC_000019.10 95.95 True relocation, inconsistency = -1881200 47336024 47336672 27061062 27061711 NC_060929.1 NC_000019.10 96.92 True local misassembly 47336673 47337690 27062052 27063070 NC_060929.1 NC_000019.10 95.98 True local misassembly 47338031 47338875 27063071 27063915 NC_060929.1 NC_000019.10 97.63 True local misassembly 47338876 47340268 27064255 27065644 NC_060929.1 NC_000019.10 95.41 True translocation 123442957 123443974 27071062 27072079 NC_060925.1 NC_000019.10 96.27 True local misassembly 123444315 123444874 27072080 27072639 NC_060925.1 NC_000019.10 97.14 True translocation 25971318 25972244 27086141 27087068 NC_060943.1 NC_000019.10 95.26 True translocation 123994326 123997916 27094558 27098147 NC_060925.1 NC_000019.10 95.27 True relocation, inconsistency = -1839585 122179123 122180905 27118939 27120720 NC_060925.1 NC_000019.10 95.34 True local misassembly 122180906 122182688 27121061 27122841 NC_060925.1 NC_000019.10 95.34 True relocation, inconsistency = 10544 122195449 122197145 27125058 27126757 NC_060925.1 NC_000019.10 95.47 True relocation, inconsistency = 1236588 123436356 123437830 27129380 27130856 NC_060925.1 NC_000019.10 95.19 True translocation 47324439 47325182 27133435 27134178 NC_060929.1 NC_000019.10 96.77 True translocation 29662202 29663036 27157572 27158406 NC_060943.1 NC_000019.10 97.01 True local misassembly 29663377 29665226 27158407 27160256 NC_060943.1 NC_000019.10 95.89 True translocation 49592596 49593317 27160257 27160978 NC_060929.1 NC_000019.10 96.47 True relocation, inconsistency = -281658 49321673 49322536 27170992 27171855 NC_060929.1 NC_000019.10 95.95 True local misassembly 49322537 49323996 27172195 27173655 NC_060929.1 NC_000019.10 95.55 True translocation 124043612 124044276 27176128 27176791 NC_060925.1 NC_000019.10 96.24 True local misassembly 124044277 124045279 27177132 27178133 NC_060925.1 NC_000019.10 96.01 True local misassembly 124045619 124049124 27178134 27181635 NC_060925.1 NC_000019.10 95.27 True translocation 49433740 49434656 27181830 27182746 NC_060929.1 NC_000019.10 95.97 True local misassembly 49434997 49435955 27182747 27183707 NC_060929.1 NC_000019.10 96.46 True translocation 29656034 29657832 27185386 27187187 NC_060943.1 NC_000019.10 95.67 True translocation 47223505 47224017 27188140 27188652 NC_060929.1 NC_000019.10 97.08 True translocation, scaffold gap is present 29760494 40553010 27240875 37751514 NC_060943.1 NC_000019.10 96.88 True indel: indel (> 5bp) 40553233 41577793 37751664 38773735 NC_060943.1 NC_000019.10 99.55 True local misassembly 41592953 42699734 38788943 39894841 NC_060943.1 NC_000019.10 99.69 True local misassembly 42700315 57846098 39895400 54753402 NC_060943.1 NC_000019.10 97.58 True local misassembly 57848423 61704428 54755942 58607362 NC_060943.1 NC_000019.10 99.04 True CONTIG NC_000019.10 58617616 misassembled 100865 102310 60001 61446 NC_060944.1 NC_000020.11 100.0 True local misassembly 103890 105648 61447 63215 NC_060944.1 NC_000020.11 99.43 True fake: scaffold gap size wrong estimation (local) 106248 108642 63841 66235 NC_060944.1 NC_000020.11 100.0 True fake: scaffold gap size wrong estimation (local) 108757 3087998 66336 3057234 NC_060944.1 NC_000020.11 97.98 True indel: indel (> 5bp) 3088400 10160530 3057584 10117718 NC_060944.1 NC_000020.11 99.57 True indel: indel (> 5bp) 10160805 10850795 10117949 10807816 NC_060944.1 NC_000020.11 99.86 True fake: not a misassembly (possible transposable element) 10850796 10851413 10808434 10807817 NC_060944.1 NC_000020.11 100.0 True fake: not a misassembly (possible transposable element) 10851414 15781258 10808435 15730888 NC_060944.1 NC_000020.11 99.68 True local misassembly 15781540 26364585 15731993 26364240 NC_060944.1 NC_000020.11 98.92 True fake: scaffold gap size wrong estimation (local) 26366486 26386428 26365415 26385793 NC_060944.1 NC_000020.11 99.62 True relocation, scaffold gap is present, inconsistency = 434784 26871652 26878107 26442684 26436233 NC_060944.1 NC_000020.11 96.98 True fake: scaffold gap size wrong estimation (local) 26803013 26871471 26511802 26443002 NC_060944.1 NC_000020.11 96.22 True local misassembly 26793474 26798537 26521336 26516272 NC_060944.1 NC_000020.11 95.93 True local misassembly 26790778 26793131 26523691 26521337 NC_060944.1 NC_000020.11 95.75 True local misassembly 26781899 26790435 26532233 26523692 NC_060944.1 NC_000020.11 95.74 True local misassembly 26779821 26781556 26533969 26532234 NC_060944.1 NC_000020.11 95.22 True local misassembly 26774382 26779537 26540084 26534929 NC_060944.1 NC_000020.11 96.94 True local misassembly 26770853 26773854 26544290 26541288 NC_060944.1 NC_000020.11 97.1 True local misassembly 26769068 26770852 26547095 26545310 NC_060944.1 NC_000020.11 96.53 True local misassembly 26754037 26769067 26563151 26548114 NC_060944.1 NC_000020.11 96.85 True local misassembly 26749005 26753694 26567839 26563152 NC_060944.1 NC_000020.11 95.86 True local misassembly 26737919 26749004 26580288 26569200 NC_060944.1 NC_000020.11 96.37 True relocation, inconsistency = -58469 26795316 26796387 26581358 26580289 NC_060944.1 NC_000020.11 95.73 True local misassembly 26790064 26795315 26586955 26581702 NC_060944.1 NC_000020.11 96.73 True relocation, scaffold gap is present, inconsistency = 392846 26393300 26397108 26587065 26590875 NC_060944.1 NC_000020.11 98.06 True inversion, scaffold gap is present 26405980 26406819 26597263 26596423 NC_060944.1 NC_000020.11 95.72 True relocation, inconsistency = 10554 26392815 26394694 26597995 26599875 NC_060944.1 NC_000020.11 95.0 True relocation, inconsistency = 384070 26779053 26786923 26600164 26608033 NC_060944.1 NC_000020.11 97.43 True relocation, scaffold gap is present, inconsistency = 1579073 28366142 28370409 26608179 26612447 NC_060944.1 NC_000020.11 96.97 True relocation, inconsistency = 630251 29000661 29015314 26612448 26627097 NC_060944.1 NC_000020.11 97.75 True relocation, inconsistency = -110390 28904925 28907433 26627098 26629607 NC_060944.1 NC_000020.11 98.21 True relocation, inconsistency = -59143 28848291 28852924 26629608 26634242 NC_060944.1 NC_000020.11 98.02 True relocation, scaffold gap is present, inconsistency = -1436570 27417008 27425548 26634896 26643438 NC_060944.1 NC_000020.11 98.55 True relocation, inconsistency = -138343 27287557 27289540 26643790 26645772 NC_060944.1 NC_000020.11 98.34 True indel: indel (> 5bp) 27289711 27290391 26645773 26646454 NC_060944.1 NC_000020.11 98.68 True relocation, scaffold gap is present, inconsistency = 1793915 29084601 29089009 26646749 26651160 NC_060944.1 NC_000020.11 98.56 True relocation, inconsistency = -1661140 27427870 27434854 26651161 26658147 NC_060944.1 NC_000020.11 99.21 True relocation, inconsistency = 720875 28155730 28159693 26658148 26662111 NC_060944.1 NC_000020.11 98.55 True relocation, inconsistency = -1226053 26933641 26938558 26662112 26667035 NC_060944.1 NC_000020.11 98.22 True relocation, inconsistency = 1152635 28091194 28096954 26667036 26672795 NC_060944.1 NC_000020.11 99.04 True indel: stretch of mismatches 28096955 28109631 26672796 26685306 NC_060944.1 NC_000020.11 97.86 True relocation, inconsistency = -1154690 26959106 26966962 26689471 26697331 NC_060944.1 NC_000020.11 98.6 True fake: not a misassembly (possible transposable element) 27654019 27656167 26697332 26699479 NC_060944.1 NC_000020.11 99.3 True fake: not a misassembly (possible transposable element) 26966731 26978128 26699480 26710885 NC_060944.1 NC_000020.11 98.75 True local misassembly 26978471 26980111 26710886 26712528 NC_060944.1 NC_000020.11 98.84 True indel: indel (> 5bp) 26980281 26991854 26712529 26724106 NC_060944.1 NC_000020.11 98.69 True local misassembly 26991855 26994117 26724449 26726714 NC_060944.1 NC_000020.11 98.19 True local misassembly 26994118 26996608 26727057 26729549 NC_060944.1 NC_000020.11 97.87 True local misassembly 26996609 26998128 26729892 26731413 NC_060944.1 NC_000020.11 97.96 True indel: stretch of mismatches 26998277 27000071 26731562 26733354 NC_060944.1 NC_000020.11 97.16 True local misassembly 27003964 27007294 26737734 26741066 NC_060944.1 NC_000020.11 98.44 True local misassembly 27008168 27010348 26741067 26743249 NC_060944.1 NC_000020.11 98.4 True local misassembly 27010349 27015631 26743592 26748869 NC_060944.1 NC_000020.11 98.47 True local misassembly 27015632 27023432 26749212 26757009 NC_060944.1 NC_000020.11 98.35 True local misassembly 27023875 27042951 26758128 26777202 NC_060944.1 NC_000020.11 98.53 True local misassembly 27042952 27049023 26777545 26783616 NC_060944.1 NC_000020.11 98.34 True local misassembly 27050042 27050899 26783617 26784474 NC_060944.1 NC_000020.11 98.95 True local misassembly 27051242 27062966 26784475 26796200 NC_060944.1 NC_000020.11 98.25 True local misassembly 27064137 27070087 26797371 26803323 NC_060944.1 NC_000020.11 97.72 True local misassembly 27073652 27081176 26806887 26814410 NC_060944.1 NC_000020.11 98.51 True local misassembly 27081177 27087086 26814753 26820666 NC_060944.1 NC_000020.11 98.5 True local misassembly 27088104 27088961 26820667 26821524 NC_060944.1 NC_000020.11 98.83 True local misassembly 27089304 27094204 26821525 26826431 NC_060944.1 NC_000020.11 98.27 True local misassembly 27096682 27101087 26829249 26833652 NC_060944.1 NC_000020.11 97.89 True local misassembly 27101088 27107403 26833991 26840310 NC_060944.1 NC_000020.11 98.39 True local misassembly 27109179 27113160 26840726 26844708 NC_060944.1 NC_000020.11 98.04 True local misassembly 27113161 27121213 26845051 26853106 NC_060944.1 NC_000020.11 98.2 True local misassembly 27121214 27129170 26853449 26861406 NC_060944.1 NC_000020.11 98.42 True local misassembly 27129171 27135691 26861750 26868274 NC_060944.1 NC_000020.11 98.27 True local misassembly 27136708 27139759 26868275 26871328 NC_060944.1 NC_000020.11 98.5 True local misassembly 27140102 27142877 26871329 26874106 NC_060944.1 NC_000020.11 98.49 True fake: not a misassembly (possible transposable element) 27339621 27345698 26874107 26880184 NC_060944.1 NC_000020.11 98.62 True fake: not a misassembly (possible transposable element) 27149971 27166354 26880185 26896918 NC_060944.1 NC_000020.11 96.31 True relocation, inconsistency = 1929620 29095975 29096992 26896919 26897936 NC_060944.1 NC_000020.11 99.36 True local misassembly 29097334 29099265 26897937 26899868 NC_060944.1 NC_000020.11 97.15 True relocation, inconsistency = -1930981 27168783 27185589 26900367 26917176 NC_060944.1 NC_000020.11 98.86 True local misassembly 27182871 27188596 26917177 26922900 NC_060944.1 NC_000020.11 98.89 True local misassembly 27192928 27222243 26923499 26952487 NC_060944.1 NC_000020.11 97.5 True local misassembly 27219525 27220339 26952488 26953302 NC_060944.1 NC_000020.11 98.89 True relocation, inconsistency = 846609 28067266 28068882 26953620 26955236 NC_060944.1 NC_000020.11 99.51 True local misassembly 28068883 28071484 26955579 26958178 NC_060944.1 NC_000020.11 97.56 True relocation, inconsistency = -735838 27335647 27341230 26958179 26963762 NC_060944.1 NC_000020.11 99.23 True relocation, inconsistency = -387758 26953647 26955236 26963937 26965525 NC_060944.1 NC_000020.11 96.15 True relocation, inconsistency = 457955 27413192 27416357 26965526 26968693 NC_060944.1 NC_000020.11 97.6 True relocation, inconsistency = -181487 27234958 27247073 26968781 26980895 NC_060944.1 NC_000020.11 98.34 True relocation, inconsistency = 7300 27254374 27260512 26980896 26987036 NC_060944.1 NC_000020.11 98.13 True local misassembly 27260513 27261850 26987379 26988717 NC_060944.1 NC_000020.11 98.58 True local misassembly 27262188 27271384 26988718 26997919 NC_060944.1 NC_000020.11 98.2 True local misassembly 27271385 27274420 26998262 27001299 NC_060944.1 NC_000020.11 98.52 True local misassembly 27274421 27275947 27001643 27003169 NC_060944.1 NC_000020.11 98.1 True indel: indel (> 5bp) 27276119 27279443 27003170 27006494 NC_060944.1 NC_000020.11 98.95 True local misassembly 27279786 27282967 27006495 27009680 NC_060944.1 NC_000020.11 98.33 True relocation, inconsistency = 156351 27439319 27443547 27009681 27013910 NC_060944.1 NC_000020.11 99.13 True relocation, inconsistency = 1307681 28751423 28758367 27014105 27021051 NC_060944.1 NC_000020.11 99.05 True relocation, inconsistency = -1418833 27339535 27341937 27021052 27023455 NC_060944.1 NC_000020.11 98.97 True local misassembly 27342280 27342786 27023456 27023962 NC_060944.1 NC_000020.11 97.46 True relocation, inconsistency = -42488 27300299 27307955 27023963 27031618 NC_060944.1 NC_000020.11 98.88 True relocation, inconsistency = 1740906 29048862 29051905 27031619 27034662 NC_060944.1 NC_000020.11 97.39 True local misassembly 29045450 29047132 27034663 27036347 NC_060944.1 NC_000020.11 98.33 True relocation, inconsistency = -1626702 27420431 27422504 27036348 27038421 NC_060944.1 NC_000020.11 98.02 True relocation, inconsistency = -21756 27401423 27404990 27039096 27042665 NC_060944.1 NC_000020.11 98.14 True relocation, inconsistency = -82940 27322051 27331020 27042666 27051463 NC_060944.1 NC_000020.11 96.75 True fake: not a misassembly (possible transposable element) 28156367 28159016 27051580 27054230 NC_060944.1 NC_000020.11 98.94 True fake: not a misassembly (possible transposable element) 27331751 27342598 27054231 27065076 NC_060944.1 NC_000020.11 99.11 True local misassembly 27342936 27355707 27065077 27077858 NC_060944.1 NC_000020.11 98.51 True local misassembly 27356050 27360576 27077859 27082384 NC_060944.1 NC_000020.11 99.25 True local misassembly 27360577 27362955 27084084 27086461 NC_060944.1 NC_000020.11 99.12 True indel: indel (> 5bp) 27363127 27366670 27086462 27090006 NC_060944.1 NC_000020.11 99.21 True local misassembly 27366671 27370096 27090349 27093774 NC_060944.1 NC_000020.11 99.24 True local misassembly 27371114 27375384 27093775 27098046 NC_060944.1 NC_000020.11 99.13 True local misassembly 27377979 27385708 27100305 27108032 NC_060944.1 NC_000020.11 99.06 True local misassembly 27385709 27391533 27108375 27114197 NC_060944.1 NC_000020.11 98.78 True local misassembly 27392552 27397968 27114198 27119610 NC_060944.1 NC_000020.11 99.0 True indel: indel (> 5bp) 27398140 27406142 27119611 27127615 NC_060944.1 NC_000020.11 99.09 True local misassembly 27408728 27412299 27130882 27134453 NC_060944.1 NC_000020.11 99.19 True local misassembly 27412642 27413956 27134454 27135767 NC_060944.1 NC_000020.11 98.78 True local misassembly 27413957 27418556 27137128 27141727 NC_060944.1 NC_000020.11 99.22 True local misassembly 27418557 27426712 27143430 27151586 NC_060944.1 NC_000020.11 99.3 True local misassembly 27427055 27437087 27151587 27161619 NC_060944.1 NC_000020.11 99.18 True relocation, inconsistency = 7823 27444911 27447513 27161620 27164221 NC_060944.1 NC_000020.11 99.37 True local misassembly 27447856 27450881 27164222 27167248 NC_060944.1 NC_000020.11 99.03 True relocation, inconsistency = 1613246 29064128 29070799 27167249 27173955 NC_060944.1 NC_000020.11 97.97 True relocation, inconsistency = -1784185 27286615 27294745 27173956 27182088 NC_060944.1 NC_000020.11 98.45 True relocation, inconsistency = 1130770 28425516 28432171 27182089 27188576 NC_060944.1 NC_000020.11 96.86 True relocation, inconsistency = -1087264 27344908 27345505 27188577 27189174 NC_060944.1 NC_000020.11 99.17 True relocation, inconsistency = 22771 27368277 27375423 27189175 27196319 NC_060944.1 NC_000020.11 98.88 True relocation, inconsistency = 1394017 28769658 28774023 27196537 27200904 NC_060944.1 NC_000020.11 99.5 True relocation, inconsistency = -1291692 27482332 27494575 27200905 27213147 NC_060944.1 NC_000020.11 99.04 True relocation, inconsistency = 1126851 28621427 28626171 27213148 27217892 NC_060944.1 NC_000020.11 97.91 True relocation, inconsistency = -1194167 27432005 27432862 27217893 27218751 NC_060944.1 NC_000020.11 97.66 True relocation, inconsistency = 658331 28091194 28094764 27218752 27222320 NC_060944.1 NC_000020.11 99.05 True relocation, inconsistency = -586936 27507829 27527751 27222321 27241565 NC_060944.1 NC_000020.11 95.72 True local misassembly 27525868 27550023 27242401 27267071 NC_060944.1 NC_000020.11 95.69 True fake: not a misassembly (possible transposable element) 28224990 28228746 27267072 27270828 NC_060944.1 NC_000020.11 99.63 True fake: not a misassembly (possible transposable element) 27551745 27552702 27270829 27271786 NC_060944.1 NC_000020.11 99.15 True local misassembly 27553045 27560124 27271787 27278870 NC_060944.1 NC_000020.11 99.25 True local misassembly 27562012 27572393 27278886 27289275 NC_060944.1 NC_000020.11 99.11 True relocation, inconsistency = 259641 27832035 27837472 27289276 27294714 NC_060944.1 NC_000020.11 98.87 True translocation, scaffold gap is present 42723056 42723593 27295636 27296173 NC_060933.1 NC_000020.11 100.0 True translocation 27340538 27344123 27296186 27299769 NC_060944.1 NC_000020.11 97.91 True relocation, inconsistency = 757246 28101370 28108670 27299770 27307072 NC_060944.1 NC_000020.11 99.55 True relocation, inconsistency = 47249 28155920 28156871 27307073 27308023 NC_060944.1 NC_000020.11 98.97 True relocation, inconsistency = -824547 27332427 27343629 27308126 27319670 NC_060944.1 NC_000020.11 95.95 True relocation, inconsistency = 254260 27601013 27602861 27322794 27324642 NC_060944.1 NC_000020.11 99.35 True local misassembly 27603203 27603732 27324643 27325172 NC_060944.1 NC_000020.11 99.47 True relocation, inconsistency = 363639 27967372 27972053 27325173 27329855 NC_060944.1 NC_000020.11 99.32 True relocation, inconsistency = 36705 28008950 28013944 27330047 27335041 NC_060944.1 NC_000020.11 98.89 True relocation, inconsistency = 1030219 29044164 29055266 27335042 27345975 NC_060944.1 NC_000020.11 97.4 True relocation, inconsistency = -1685504 27369763 27373540 27345976 27349755 NC_060944.1 NC_000020.11 98.62 True relocation, inconsistency = 1052933 28426474 28428466 27349756 27351749 NC_060944.1 NC_000020.11 98.53 True indel: indel (> 5bp) 28428638 28430050 27351750 27353162 NC_060944.1 NC_000020.11 97.54 True relocation, inconsistency = -801388 27628663 27632494 27353163 27356994 NC_060944.1 NC_000020.11 98.96 True local misassembly 27632495 27636348 27357337 27361190 NC_060944.1 NC_000020.11 98.78 True local misassembly 27636965 27650604 27362152 27375789 NC_060944.1 NC_000020.11 99.32 True local misassembly 27651961 27666112 27375790 27389939 NC_060944.1 NC_000020.11 99.05 True local misassembly 27667469 27677901 27389940 27400377 NC_060944.1 NC_000020.11 99.18 True local misassembly 27678762 27683042 27400561 27404842 NC_060944.1 NC_000020.11 98.32 True local misassembly 27683043 27685530 27405185 27407673 NC_060944.1 NC_000020.11 99.24 True local misassembly 27685531 27686964 27408016 27409449 NC_060944.1 NC_000020.11 98.54 True local misassembly 27687989 27692986 27409450 27414447 NC_060944.1 NC_000020.11 98.64 True local misassembly 27692987 27702822 27414790 27424625 NC_060944.1 NC_000020.11 99.25 True local misassembly 27704524 27708387 27424626 27428487 NC_060944.1 NC_000020.11 98.91 True local misassembly 27709889 27716461 27429645 27436214 NC_060944.1 NC_000020.11 99.0 True indel: indel (> 5bp) 27716633 27721892 27436215 27441475 NC_060944.1 NC_000020.11 99.05 True indel: indel (> 5bp) 27722064 27726382 27441476 27445794 NC_060944.1 NC_000020.11 99.24 True local misassembly 27726383 27727991 27446138 27447745 NC_060944.1 NC_000020.11 98.69 True local misassembly 27727992 27732829 27448088 27452923 NC_060944.1 NC_000020.11 99.0 True fake: not a misassembly (possible transposable element) 27830018 27835609 27452924 27458518 NC_060944.1 NC_000020.11 98.4 True fake: not a misassembly (possible transposable element) 27738080 27748132 27458519 27468571 NC_060944.1 NC_000020.11 99.0 True relocation, inconsistency = -420126 27328156 27331401 27468721 27471963 NC_060944.1 NC_000020.11 95.47 True relocation, inconsistency = 422158 27753560 27769339 27471964 27488084 NC_060944.1 NC_000020.11 97.15 True relocation, inconsistency = -640983 27128357 27130952 27488085 27490684 NC_060944.1 NC_000020.11 98.51 True relocation, inconsistency = 258938 27389891 27397736 27490685 27498526 NC_060944.1 NC_000020.11 99.27 True relocation, inconsistency = 669213 28066950 28072790 27498527 27504366 NC_060944.1 NC_000020.11 99.23 True relocation, scaffold gap is present, inconsistency = -686804 27386414 27388166 27504794 27506546 NC_060944.1 NC_000020.11 98.64 True relocation, inconsistency = 404470 27792637 27798074 27506547 27511985 NC_060944.1 NC_000020.11 98.66 True fake: not a misassembly (possible transposable element) 28788663 28794875 27512347 27518560 NC_060944.1 NC_000020.11 99.34 True fake: not a misassembly (possible transposable element) 27807538 27810302 27518802 27521566 NC_060944.1 NC_000020.11 97.5 True relocation, inconsistency = 276971 28088133 28090175 27522426 27524468 NC_060944.1 NC_000020.11 98.21 True relocation, inconsistency = -916278 27173898 27175791 27524469 27526363 NC_060944.1 NC_000020.11 98.84 True relocation, inconsistency = 153591 27329383 27337157 27526364 27534136 NC_060944.1 NC_000020.11 99.22 True relocation, inconsistency = 48264 27385448 27391385 27534163 27539928 NC_060944.1 NC_000020.11 95.74 True relocation, inconsistency = 227410 27618805 27623771 27539938 27544734 NC_060944.1 NC_000020.11 95.53 True relocation, inconsistency = 1454800 29078965 29082012 27545128 27548176 NC_060944.1 NC_000020.11 98.82 True relocation, inconsistency = -1772288 27309725 27323829 27548177 27562281 NC_060944.1 NC_000020.11 98.99 True relocation, inconsistency = 527504 27851334 27854817 27562282 27565766 NC_060944.1 NC_000020.11 98.6 True fake: not a misassembly (possible transposable element) 27309329 27315094 27565797 27571564 NC_060944.1 NC_000020.11 99.06 True fake: not a misassembly (possible transposable element) 27862971 27873432 27571883 27582001 NC_060944.1 NC_000020.11 96.09 True relocation, inconsistency = 179444 28052877 28053542 27582002 27582667 NC_060944.1 NC_000020.11 98.75 True local misassembly 28053543 28057698 27583006 27587162 NC_060944.1 NC_000020.11 99.3 True relocation, inconsistency = 991813 29049512 29051573 27587163 27589224 NC_060944.1 NC_000020.11 96.98 True relocation, inconsistency = -1172953 27878621 27883727 27589225 27594331 NC_060944.1 NC_000020.11 99.08 True local misassembly 27883728 27886104 27594674 27597051 NC_060944.1 NC_000020.11 99.29 True local misassembly 27886105 27891156 27597395 27602449 NC_060944.1 NC_000020.11 99.17 True fake: not a misassembly (possible transposable element) 92337373 92338379 27602450 27603458 NC_060926.1 NC_000020.11 95.81 True fake: not a misassembly (possible transposable element) 27895046 27899971 27604126 27609049 NC_060944.1 NC_000020.11 98.42 True local misassembly 27901048 27904027 27609450 27612432 NC_060944.1 NC_000020.11 98.93 True local misassembly 27904028 27910896 27612775 27619643 NC_060944.1 NC_000020.11 98.54 True fake: not a misassembly (possible transposable element) 29096547 29099336 27619644 27622431 NC_060944.1 NC_000020.11 99.1 True fake: not a misassembly (possible transposable element) 27912328 27917622 27622432 27627726 NC_060944.1 NC_000020.11 99.09 True local misassembly 27917965 27922064 27627727 27631827 NC_060944.1 NC_000020.11 99.29 True indel: indel (> 5bp) 27922236 27924783 27631828 27634374 NC_060944.1 NC_000020.11 99.53 True indel: indel (> 5bp) 27924955 27925820 27634375 27635238 NC_060944.1 NC_000020.11 99.08 True local misassembly 27925821 27934331 27635581 27644093 NC_060944.1 NC_000020.11 99.32 True relocation, inconsistency = -133564 27801204 27805039 27644530 27648366 NC_060944.1 NC_000020.11 98.29 True relocation, inconsistency = -380334 27424706 27431045 27648367 27654709 NC_060944.1 NC_000020.11 99.09 True relocation, inconsistency = 573030 28004264 28010005 27654898 27660642 NC_060944.1 NC_000020.11 98.69 True relocation, inconsistency = -799029 27211472 27215859 27661138 27665524 NC_060944.1 NC_000020.11 98.25 True relocation, inconsistency = 122332 27338192 27340910 27665525 27668244 NC_060944.1 NC_000020.11 97.73 True relocation, inconsistency = 259023 27600022 27600772 27668333 27669083 NC_060944.1 NC_000020.11 95.36 True relocation, inconsistency = 359560 27960333 27973000 27669084 27681752 NC_060944.1 NC_000020.11 99.16 True local misassembly 27974019 27979187 27681753 27686922 NC_060944.1 NC_000020.11 99.16 True relocation, inconsistency = -637786 27341402 27341937 27686923 27687459 NC_060944.1 NC_000020.11 99.3 True local misassembly 27342280 27343921 27687460 27689102 NC_060944.1 NC_000020.11 99.09 True indel: indel (> 5bp) 27344093 27345059 27689103 27690069 NC_060944.1 NC_000020.11 98.78 True relocation, inconsistency = -8158 27336902 27339620 27690070 27692788 NC_060944.1 NC_000020.11 97.47 True relocation, inconsistency = 648833 27988454 28000617 27692789 27704784 NC_060944.1 NC_000020.11 97.35 True fake: not a misassembly (possible transposable element) 26980837 26983823 27704785 27707775 NC_060944.1 NC_000020.11 98.88 True fake: not a misassembly (possible transposable element) 28001645 28004501 27707857 27710715 NC_060944.1 NC_000020.11 98.71 True local misassembly 28004844 28009066 27710716 27714937 NC_060944.1 NC_000020.11 99.46 True indel: indel (> 5bp) 28009238 28010433 27714938 27716133 NC_060944.1 NC_000020.11 99.25 True fake: not a misassembly (possible transposable element) 28833119 28839291 27716134 27722307 NC_060944.1 NC_000020.11 99.03 True fake: not a misassembly (possible transposable element) 28021362 28024414 27722308 27725358 NC_060944.1 NC_000020.11 99.17 True local misassembly 28024757 28026430 27725359 27727032 NC_060944.1 NC_000020.11 99.16 True indel: indel (> 5bp) 28026431 28037182 27727204 27737960 NC_060944.1 NC_000020.11 99.18 True local misassembly 28037183 28049088 27738979 27750884 NC_060944.1 NC_000020.11 99.31 True relocation, inconsistency = 323903 28372992 28375505 27750885 27753398 NC_060944.1 NC_000020.11 99.31 True local misassembly 28375848 28376354 27753399 27753905 NC_060944.1 NC_000020.11 95.96 True relocation, inconsistency = 719349 29095704 29098539 27753906 27756740 NC_060944.1 NC_000020.11 98.94 True relocation, inconsistency = -1859110 27239430 27243342 27756741 27760652 NC_060944.1 NC_000020.11 98.62 True relocation, inconsistency = 644740 27888083 27889905 27760653 27762475 NC_060944.1 NC_000020.11 99.37 True relocation, inconsistency = -47581 27842325 27843215 27762476 27763366 NC_060944.1 NC_000020.11 99.17 True relocation, inconsistency = -746156 27097060 27099335 27763367 27765644 NC_060944.1 NC_000020.11 98.3 True relocation, inconsistency = 964855 28064191 28071484 27765645 27772765 NC_060944.1 NC_000020.11 96.71 True relocation, inconsistency = 549424 28620909 28631179 27772766 27783039 NC_060944.1 NC_000020.11 98.95 True relocation, inconsistency = -1335906 27295274 27299089 27783040 27786856 NC_060944.1 NC_000020.11 99.1 True relocation, inconsistency = 1782822 29081912 29083644 27786857 27788589 NC_060944.1 NC_000020.11 98.84 True relocation, inconsistency = -992268 28091377 28099897 27788590 27797112 NC_060944.1 NC_000020.11 99.12 True relocation, inconsistency = -587953 27511945 27512532 27797113 27797700 NC_060944.1 NC_000020.11 98.15 True indel: indel (> 5bp) 27512704 27515334 27797701 27800331 NC_060944.1 NC_000020.11 98.97 True relocation, inconsistency = 578440 28094060 28099467 27800617 27806024 NC_060944.1 NC_000020.11 99.26 True indel: indel (> 5bp) 28099639 28101700 27806025 27808086 NC_060944.1 NC_000020.11 99.13 True relocation, inconsistency = -671925 27430057 27438720 27808368 27817031 NC_060944.1 NC_000020.11 98.96 True relocation, inconsistency = -49626 27389095 27391201 27817032 27819139 NC_060944.1 NC_000020.11 98.85 True relocation, inconsistency = 216873 27608075 27610765 27819140 27821830 NC_060944.1 NC_000020.11 96.7 True relocation, inconsistency = -585078 27025688 27035684 27821831 27831655 NC_060944.1 NC_000020.11 96.52 True relocation, inconsistency = 148496 27184181 27186796 27831656 27834270 NC_060944.1 NC_000020.11 98.68 True relocation, inconsistency = 948563 28135363 28145739 27834274 27844654 NC_060944.1 NC_000020.11 98.81 True fake: not a misassembly (possible transposable element) 27336490 27342564 27844655 27850557 NC_060944.1 NC_000020.11 96.55 True fake: not a misassembly (possible transposable element) 28154756 28165438 27850780 27861465 NC_060944.1 NC_000020.11 98.81 True local misassembly 28165439 28167442 27862149 27864153 NC_060944.1 NC_000020.11 97.76 True local misassembly 28168461 28175606 27864154 27871303 NC_060944.1 NC_000020.11 99.13 True fake: scaffold gap size wrong estimation (local) 28170162 28173905 27872382 27876125 NC_060944.1 NC_000020.11 98.93 True indel: indel (> 5bp) 28174077 28177848 27876126 27879898 NC_060944.1 NC_000020.11 99.18 True local misassembly 28178191 28180681 27879899 27882389 NC_060944.1 NC_000020.11 99.16 True local misassembly 28181024 28183590 27882390 27884956 NC_060944.1 NC_000020.11 99.07 True local misassembly 28183591 28185116 27885299 27886824 NC_060944.1 NC_000020.11 99.28 True indel: indel (> 5bp) 28185288 28192906 27886825 27894438 NC_060944.1 NC_000020.11 99.12 True relocation, inconsistency = 799868 28992775 28994732 27894439 27896225 NC_060944.1 NC_000020.11 95.44 True relocation, inconsistency = -812445 28182288 28192663 27896226 27906598 NC_060944.1 NC_000020.11 99.06 True relocation, inconsistency = -310299 27882365 27883292 27906599 27907527 NC_060944.1 NC_000020.11 98.55 True relocation, inconsistency = -394588 27489134 27490596 27907957 27909420 NC_060944.1 NC_000020.11 99.18 True indel: indel (> 5bp) 27490768 27496287 27909421 27914942 NC_060944.1 NC_000020.11 99.17 True local misassembly 27496629 27499475 27914943 27917790 NC_060944.1 NC_000020.11 99.19 True relocation, inconsistency = 720517 28220696 28230746 27918494 27928546 NC_060944.1 NC_000020.11 99.28 True local misassembly 28231765 28234400 27928547 27931184 NC_060944.1 NC_000020.11 99.09 True relocation, inconsistency = -12404 28223415 28228962 27932603 27938150 NC_060944.1 NC_000020.11 99.26 True indel: indel (> 5bp) 28229134 28232501 27938151 27941520 NC_060944.1 NC_000020.11 99.05 True relocation, inconsistency = -1020633 27212208 27217627 27941860 27947281 NC_060944.1 NC_000020.11 98.8 True relocation, inconsistency = -285289 26932339 26932931 27947282 27947877 NC_060944.1 NC_000020.11 96.98 True relocation, inconsistency = 251139 27185626 27188336 27949433 27952142 NC_060944.1 NC_000020.11 97.16 True relocation, inconsistency = 136258 27324595 27325601 27952143 27953149 NC_060944.1 NC_000020.11 97.46 True relocation, inconsistency = 923798 28249497 28252305 27953247 27956055 NC_060944.1 NC_000020.11 97.84 True local misassembly 28258762 28265367 27956056 27962490 NC_060944.1 NC_000020.11 96.64 True fake: not a misassembly (possible transposable element) 27239630 27241902 27962491 27964760 NC_060944.1 NC_000020.11 96.17 True fake: not a misassembly (possible transposable element) 28268662 28276736 27964761 27972835 NC_060944.1 NC_000020.11 99.02 True indel: indel (<= 5bp) 28277050 28281265 27973150 27977364 NC_060944.1 NC_000020.11 98.34 True local misassembly 28281708 28284345 27978481 27981117 NC_060944.1 NC_000020.11 99.05 True local misassembly 28284346 28287182 27981460 27984299 NC_060944.1 NC_000020.11 99.08 True local misassembly 28287183 28296929 27984641 27994394 NC_060944.1 NC_000020.11 98.96 True local misassembly 28297610 28307187 27994395 28003975 NC_060944.1 NC_000020.11 98.38 True relocation, inconsistency = -1137885 27169303 27170160 28003976 28004832 NC_060944.1 NC_000020.11 97.7 True relocation, inconsistency = 1014846 28185007 28187725 28004833 28007549 NC_060944.1 NC_000020.11 97.73 True relocation, inconsistency = 121338 28309064 28317767 28007550 28016079 NC_060944.1 NC_000020.11 96.75 True local misassembly 28318786 28326682 28016080 28023978 NC_060944.1 NC_000020.11 99.14 True local misassembly 28326683 28332611 28024826 28030755 NC_060944.1 NC_000020.11 98.6 True local misassembly 28334211 28342484 28032696 28040969 NC_060944.1 NC_000020.11 99.23 True indel: indel (> 5bp) 28342656 28345203 28040970 28043517 NC_060944.1 NC_000020.11 99.22 True indel: indel (> 5bp) 28345375 28346199 28043518 28044344 NC_060944.1 NC_000020.11 98.55 True local misassembly 28346542 28350641 28044345 28048444 NC_060944.1 NC_000020.11 98.37 True indel: indel (> 5bp) 28350813 28355367 28048445 28053000 NC_060944.1 NC_000020.11 98.97 True fake: not a misassembly (possible transposable element) 27871730 27873014 28053001 28054283 NC_060944.1 NC_000020.11 97.56 True fake: not a misassembly (possible transposable element) 28358689 28363168 28054284 28058766 NC_060944.1 NC_000020.11 99.06 True relocation, inconsistency = 260188 28623357 28626470 28058767 28061873 NC_060944.1 NC_000020.11 95.82 True relocation, inconsistency = -1247027 27379444 27385181 28061874 28067607 NC_060944.1 NC_000020.11 98.9 True relocation, inconsistency = -341521 27043661 27047153 28067608 28071099 NC_060944.1 NC_000020.11 97.64 True relocation, inconsistency = 712693 27759847 27764426 28071100 28075680 NC_060944.1 NC_000020.11 98.04 True relocation, inconsistency = 619397 28385530 28390792 28077387 28082651 NC_060944.1 NC_000020.11 97.95 True local misassembly 28391820 28399967 28083003 28090981 NC_060944.1 NC_000020.11 96.28 True relocation, inconsistency = -245387 28154581 28160779 28090982 28097010 NC_060944.1 NC_000020.11 96.62 True relocation, inconsistency = -906448 27254641 27256923 28097320 28099605 NC_060944.1 NC_000020.11 98.16 True indel: indel (> 5bp) 27257095 27258980 28099606 28101495 NC_060944.1 NC_000020.11 96.83 True relocation, inconsistency = 809916 28068899 28070626 28101498 28103225 NC_060944.1 NC_000020.11 96.59 True relocation, inconsistency = 340388 28412720 28415555 28104931 28107766 NC_060944.1 NC_000020.11 98.77 True relocation, inconsistency = -587121 27828436 27838526 28107768 28117517 NC_060944.1 NC_000020.11 95.54 True relocation, inconsistency = 583885 28422912 28442787 28118018 28137386 NC_060944.1 NC_000020.11 96.09 True relocation, inconsistency = -1022677 27420111 27425548 28137387 28142826 NC_060944.1 NC_000020.11 98.48 True relocation, inconsistency = 1073329 28498878 28501596 28142827 28145547 NC_060944.1 NC_000020.11 97.5 True relocation, inconsistency = -1163234 27338655 27341202 28145840 28148386 NC_060944.1 NC_000020.11 99.37 True relocation, inconsistency = 1112246 28453449 28461142 28148387 28156085 NC_060944.1 NC_000020.11 98.73 True relocation, inconsistency = -1121257 27341086 27345282 28157286 28161482 NC_060944.1 NC_000020.11 99.02 True relocation, inconsistency = 706946 28052229 28060417 28161483 28169329 NC_060944.1 NC_000020.11 95.08 True relocation, inconsistency = 1022511 29083504 29084655 28169905 28171056 NC_060944.1 NC_000020.11 96.88 True local misassembly 29084656 29086980 28171395 28173720 NC_060944.1 NC_000020.11 97.55 True indel: indel (> 5bp) 29087152 29088997 28173721 28175568 NC_060944.1 NC_000020.11 98.86 True relocation, inconsistency = -1840249 27248749 27249443 28175569 28176263 NC_060944.1 NC_000020.11 98.11 True relocation, inconsistency = 1822744 29072195 29076702 28176271 28180610 NC_060944.1 NC_000020.11 95.08 True relocation, scaffold gap is present, inconsistency = -1269867 27807200 27807875 28180975 28181650 NC_060944.1 NC_000020.11 99.56 True indel: indel (> 5bp) 27808047 27810302 28181651 28183904 NC_060944.1 NC_000020.11 97.25 True relocation, inconsistency = 680418 28490730 28492713 28183914 28185897 NC_060944.1 NC_000020.11 99.4 True relocation, inconsistency = -1156779 27335935 27338483 28185898 28188445 NC_060944.1 NC_000020.11 99.22 True indel: indel (> 5bp) 27338655 27341035 28188446 28190826 NC_060944.1 NC_000020.11 99.54 True indel: indel (> 5bp) 27341203 27343953 28190827 28193578 NC_060944.1 NC_000020.11 99.02 True relocation, inconsistency = 1030678 28374803 28377616 28193750 28196563 NC_060944.1 NC_000020.11 98.44 True relocation, inconsistency = -1399754 26977863 26980540 28196564 28199243 NC_060944.1 NC_000020.11 97.86 True relocation, inconsistency = 1522290 28504387 28505965 28200800 28202380 NC_060944.1 NC_000020.11 99.3 True indel: indel (> 5bp) 28506137 28508684 28202381 28204928 NC_060944.1 NC_000020.11 99.57 True indel: indel (> 5bp) 28508855 28511403 28204929 28207477 NC_060944.1 NC_000020.11 99.18 True indel: indel (> 5bp) 28511575 28514122 28207478 28210026 NC_060944.1 NC_000020.11 98.71 True indel: indel (> 5bp) 28514294 28515399 28210027 28211132 NC_060944.1 NC_000020.11 99.46 True local misassembly 28515400 28516834 28211476 28212911 NC_060944.1 NC_000020.11 99.58 True indel: indel (> 5bp) 28517006 28519577 28212912 28215483 NC_060944.1 NC_000020.11 97.9 True indel: indel (> 5bp) 28519749 28523152 28215484 28218889 NC_060944.1 NC_000020.11 98.56 True local misassembly 28523495 28525333 28218890 28220728 NC_060944.1 NC_000020.11 99.46 True indel: indel (> 5bp) 28525505 28526932 28220729 28222156 NC_060944.1 NC_000020.11 97.14 True relocation, inconsistency = -372169 28154764 28157584 28222157 28224978 NC_060944.1 NC_000020.11 98.97 True relocation, inconsistency = -846129 27311471 27313718 28224994 28227240 NC_060944.1 NC_000020.11 96.8 True relocation, inconsistency = -128444 27185626 27187603 28227592 28229568 NC_060944.1 NC_000020.11 98.48 True relocation, inconsistency = 186393 27374004 27376552 28229576 28232123 NC_060944.1 NC_000020.11 99.18 True indel: indel (> 5bp) 27376724 27379272 28232124 28234671 NC_060944.1 NC_000020.11 98.98 True indel: indel (> 5bp) 27379444 27381369 28234672 28236596 NC_060944.1 NC_000020.11 98.34 True local misassembly 27374908 27376385 28236597 28238073 NC_060944.1 NC_000020.11 98.28 True indel: indel (> 5bp) 27376553 27379272 28238074 28240793 NC_060944.1 NC_000020.11 98.97 True relocation, inconsistency = 1710598 29089871 29090962 28240794 28241885 NC_060944.1 NC_000020.11 99.36 True local misassembly 29091304 29092745 28241886 28243328 NC_060944.1 NC_000020.11 95.98 True relocation, inconsistency = -1688003 27406017 27410853 28244603 28249265 NC_060944.1 NC_000020.11 95.22 True relocation, inconsistency = -41132 27370997 27373832 28250541 28253377 NC_060944.1 NC_000020.11 99.01 True relocation, inconsistency = -333018 27043056 27043704 28255619 28256267 NC_060944.1 NC_000020.11 97.53 True fake: scaffold gap size wrong estimation (local) 27043738 27044551 28256555 28257370 NC_060944.1 NC_000020.11 98.16 True indel: indel (> 5bp) 27044723 27047270 28257371 28259919 NC_060944.1 NC_000020.11 98.35 True indel: indel (> 5bp) 27047441 27048854 28259920 28261332 NC_060944.1 NC_000020.11 97.93 True relocation, inconsistency = 92769 27141624 27143324 28261333 28263033 NC_060944.1 NC_000020.11 96.86 True relocation, inconsistency = 1049839 28193164 28198321 28263034 28268021 NC_060944.1 NC_000020.11 95.66 True relocation, inconsistency = -776622 27423005 27428255 28269327 28274578 NC_060944.1 NC_000020.11 98.19 True relocation, inconsistency = 1620919 29049175 29051172 28274579 28276576 NC_060944.1 NC_000020.11 98.69 True indel: indel (> 5bp) 29051344 29053606 28276577 28278841 NC_060944.1 NC_000020.11 97.09 True relocation, inconsistency = -514620 28539845 28542673 28279700 28282528 NC_060944.1 NC_000020.11 98.69 True indel: indel (> 5bp) 28542843 28544071 28282529 28283757 NC_060944.1 NC_000020.11 99.1 True relocation, inconsistency = -962169 27582436 27587280 28284291 28288966 NC_060944.1 NC_000020.11 95.73 True relocation, inconsistency = 1484033 29071314 29072023 28288967 28289676 NC_060944.1 NC_000020.11 99.25 True relocation, inconsistency = -454906 28617341 28618306 28289900 28290864 NC_060944.1 NC_000020.11 98.76 True indel: indel (> 5bp) 28618478 28621025 28290865 28293411 NC_060944.1 NC_000020.11 99.25 True indel: indel (> 5bp) 28621197 28623744 28293412 28295958 NC_060944.1 NC_000020.11 99.65 True relocation, inconsistency = -1312282 27311463 27314010 28295959 28298507 NC_060944.1 NC_000020.11 99.06 True indel: indel (> 5bp) 27314182 27315403 28298508 28299729 NC_060944.1 NC_000020.11 99.35 True relocation, inconsistency = 514933 27830337 27830983 28299730 28300376 NC_060944.1 NC_000020.11 96.84 True relocation, inconsistency = -407691 27423293 27425840 28300377 28302924 NC_060944.1 NC_000020.11 99.33 True indel: indel (> 5bp) 27426012 27428267 28302925 28305180 NC_060944.1 NC_000020.11 96.94 True relocation, inconsistency = -117951 27311175 27312875 28306039 28307744 NC_060944.1 NC_000020.11 97.1 True relocation, inconsistency = 1374315 28687191 28691414 28307745 28311797 NC_060944.1 NC_000020.11 95.01 True relocation, inconsistency = -1387233 27304182 27304718 28311798 28312334 NC_060944.1 NC_000020.11 96.07 True local misassembly 27311175 27316355 28312335 28317343 NC_060944.1 NC_000020.11 95.75 True relocation, scaffold gap is present, inconsistency = -934311 26382706 26383393 28318005 28318693 NC_060944.1 NC_000020.11 96.41 True relocation, inconsistency = 749179 27132573 27133590 28318694 28319711 NC_060944.1 NC_000020.11 97.64 True relocation, inconsistency = 229536 27363127 27365674 28319712 28322259 NC_060944.1 NC_000020.11 99.1 True indel: indel (> 5bp) 27365846 27368393 28322260 28324808 NC_060944.1 NC_000020.11 98.9 True indel: indel (> 5bp) 27368565 27369931 28324809 28326174 NC_060944.1 NC_000020.11 98.98 True relocation, inconsistency = 1678365 29048344 29053524 28326222 28331234 NC_060944.1 NC_000020.11 95.7 True relocation, inconsistency = -1723403 27330496 27333044 28331609 28334155 NC_060944.1 NC_000020.11 99.61 True indel: indel (> 5bp) 27333216 27335443 28334156 28336384 NC_060944.1 NC_000020.11 97.13 True relocation, inconsistency = 1155594 28491492 28492713 28336839 28338060 NC_060944.1 NC_000020.11 98.2 True indel: indel (> 5bp) 28492885 28495432 28338061 28340608 NC_060944.1 NC_000020.11 99.37 True relocation, inconsistency = -1077578 27417855 27420402 28340609 28343155 NC_060944.1 NC_000020.11 99.45 True indel: indel (> 5bp) 27420574 27423121 28343156 28345703 NC_060944.1 NC_000020.11 99.37 True relocation, inconsistency = -238060 27185062 27187610 28345704 28348254 NC_060944.1 NC_000020.11 98.86 True indel: indel (> 5bp) 27187782 27190036 28348255 28350509 NC_060944.1 NC_000020.11 96.76 True relocation, inconsistency = 139313 27330208 27335471 28351368 28356460 NC_060944.1 NC_000020.11 95.08 True relocation, inconsistency = 1635678 28971150 28973142 28356461 28358453 NC_060944.1 NC_000020.11 98.8 True indel: indel (> 5bp) 28973314 28974726 28358454 28359865 NC_060944.1 NC_000020.11 97.4 True relocation, inconsistency = -295693 28679034 28681862 28359866 28362694 NC_060944.1 NC_000020.11 99.01 True indel: indel (> 5bp) 28682034 28684588 28362695 28365252 NC_060944.1 NC_000020.11 99.3 True indel: indel (> 5bp) 28684760 28687307 28365253 28367797 NC_060944.1 NC_000020.11 99.22 True indel: indel (> 5bp) 28687479 28689734 28367798 28370054 NC_060944.1 NC_000020.11 96.85 True relocation, inconsistency = -7139 28683007 28684588 28370466 28372047 NC_060944.1 NC_000020.11 99.3 True indel: indel (> 5bp) 28684760 28687307 28372048 28374595 NC_060944.1 NC_000020.11 99.45 True indel: indel (> 5bp) 28687479 28690025 28374596 28377143 NC_060944.1 NC_000020.11 98.9 True indel: indel (> 5bp) 28690197 28692744 28377144 28379692 NC_060944.1 NC_000020.11 98.63 True indel: indel (> 5bp) 28692916 28695463 28379693 28382241 NC_060944.1 NC_000020.11 99.25 True indel: indel (> 5bp) 28695635 28698182 28382242 28384789 NC_060944.1 NC_000020.11 99.1 True indel: indel (> 5bp) 28698354 28698995 28384790 28385431 NC_060944.1 NC_000020.11 98.83 True relocation, inconsistency = 380301 29079297 29080860 28385432 28386996 NC_060944.1 NC_000020.11 98.85 True relocation, inconsistency = -684167 28396694 28399241 28386997 28389545 NC_060944.1 NC_000020.11 99.65 True indel: indel (> 5bp) 28399413 28401960 28389546 28392092 NC_060944.1 NC_000020.11 99.25 True relocation, inconsistency = 298770 28700731 28703278 28392093 28394642 NC_060944.1 NC_000020.11 98.98 True indel: indel (> 5bp) 28703450 28704150 28394643 28395343 NC_060944.1 NC_000020.11 99.0 True local misassembly 28704151 28708374 28395686 28399910 NC_060944.1 NC_000020.11 99.1 True indel: indel (> 5bp) 28708546 28709428 28399911 28400793 NC_060944.1 NC_000020.11 98.64 True local misassembly 28710442 28713471 28401131 28404160 NC_060944.1 NC_000020.11 97.76 True indel: indel (> 5bp) 28713643 28716361 28404161 28406880 NC_060944.1 NC_000020.11 98.79 True local misassembly 28716362 28718902 28407728 28410266 NC_060944.1 NC_000020.11 99.06 True indel: indel (> 5bp) 28719074 28721643 28410267 28412839 NC_060944.1 NC_000020.11 99.38 True indel: indel (> 5bp) 28721814 28723322 28412840 28414347 NC_060944.1 NC_000020.11 99.14 True local misassembly 28724341 28727066 28414348 28417076 NC_060944.1 NC_000020.11 97.22 True indel: indel (> 5bp) 28727237 28728560 28417077 28418402 NC_060944.1 NC_000020.11 98.34 True local misassembly 28728561 28729955 28418746 28420140 NC_060944.1 NC_000020.11 97.56 True local misassembly 28729956 28732503 28420988 28423537 NC_060944.1 NC_000020.11 99.37 True indel: indel (> 5bp) 28732675 28735215 28423538 28426081 NC_060944.1 NC_000020.11 98.74 True indel: indel (> 5bp) 28735387 28737941 28426082 28428638 NC_060944.1 NC_000020.11 98.59 True relocation, inconsistency = -1320087 27417855 27420402 28428639 28431186 NC_060944.1 NC_000020.11 99.57 True indel: indel (> 5bp) 27420574 27423121 28431187 28433735 NC_060944.1 NC_000020.11 98.94 True relocation, inconsistency = -81748 27341374 27346417 28433736 28438607 NC_060944.1 NC_000020.11 96.03 True relocation, inconsistency = 750279 28096913 28099467 28438824 28441378 NC_060944.1 NC_000020.11 99.65 True relocation, inconsistency = 159582 28259050 28263811 28441379 28445967 NC_060944.1 NC_000020.11 95.65 True relocation, scaffold gap is present, inconsistency = -928705 27335935 27338483 28446796 28449343 NC_060944.1 NC_000020.11 99.25 True relocation, inconsistency = 1415943 28754427 28756974 28449344 28451892 NC_060944.1 NC_000020.11 99.1 True indel: indel (> 5bp) 28757146 28759693 28451893 28454439 NC_060944.1 NC_000020.11 99.02 True indel: indel (> 5bp) 28759865 28762405 28454440 28456982 NC_060944.1 NC_000020.11 99.06 True indel: indel (> 5bp) 28762577 28765124 28456983 28459531 NC_060944.1 NC_000020.11 99.25 True indel: indel (> 5bp) 28765296 28767850 28459532 28462085 NC_060944.1 NC_000020.11 99.26 True indel: indel (> 5bp) 28768022 28770569 28462086 28464633 NC_060944.1 NC_000020.11 98.9 True indel: indel (> 5bp) 28770741 28773281 28464634 28467174 NC_060944.1 NC_000020.11 99.21 True relocation, inconsistency = 272624 29045913 29048453 28467182 28469722 NC_060944.1 NC_000020.11 98.62 True indel: indel (> 5bp) 29048625 29051179 28469723 28472277 NC_060944.1 NC_000020.11 99.18 True local misassembly 29054070 29056645 28472278 28474854 NC_060944.1 NC_000020.11 98.87 True relocation, inconsistency = -277720 28778926 28781438 28474855 28477368 NC_060944.1 NC_000020.11 99.29 True indel: indel (> 5bp) 28781610 28784157 28477369 28479916 NC_060944.1 NC_000020.11 99.45 True indel: indel (> 5bp) 28784329 28786882 28479917 28482471 NC_060944.1 NC_000020.11 99.49 True relocation, inconsistency = 279875 29066761 29069305 28482475 28485019 NC_060944.1 NC_000020.11 98.55 True indel: indel (> 5bp) 29069477 29072023 28485020 28487571 NC_060944.1 NC_000020.11 98.86 True indel: indel (> 5bp) 29072195 29072846 28487572 28488223 NC_060944.1 NC_000020.11 98.53 True local misassembly 29078965 29080860 28488224 28490120 NC_060944.1 NC_000020.11 98.79 True indel: indel (> 5bp) 29081032 29083578 28490121 28492667 NC_060944.1 NC_000020.11 99.14 True indel: indel (> 5bp) 29083750 29084971 28492668 28493889 NC_060944.1 NC_000020.11 98.94 True relocation, scaffold gap is present, inconsistency = 2150131 26928795 26930892 28498712 28496616 NC_060944.1 NC_000020.11 96.52 True fake: scaffold gap size wrong estimation (extensive) 26909729 26912826 28508895 28505800 NC_060944.1 NC_000020.11 96.61 True relocation, scaffold gap is present, inconsistency = 2516020 29428961 29436298 28509010 28516350 NC_060944.1 NC_000020.11 97.29 True local misassembly 29436641 29455052 28516351 28534762 NC_060944.1 NC_000020.11 98.57 True local misassembly 29455395 29471622 28534763 28550972 NC_060944.1 NC_000020.11 97.68 True local misassembly 29471623 29474450 28551485 28554313 NC_060944.1 NC_000020.11 97.77 True local misassembly 29474792 29477311 28554314 28556833 NC_060944.1 NC_000020.11 97.46 True relocation, scaffold gap is present, inconsistency = 40970 29518502 29607524 28646179 28557054 NC_060944.1 NC_000020.11 99.51 True relocation, scaffold gap is present, inconsistency = -2186648 31626311 31628115 28725021 28723214 NC_060944.1 NC_000020.11 98.29 True local misassembly 31626311 31628076 28728430 28726662 NC_060944.1 NC_000020.11 98.13 True relocation, scaffold gap is present, inconsistency = -391371 31994986 32017137 28751119 28728975 NC_060944.1 NC_000020.11 99.63 True fake: scaffold gap size wrong estimation (local) 31954532 31992489 28790005 28752592 NC_060944.1 NC_000020.11 98.26 True fake: scaffold gap size wrong estimation (local) 31909349 31954331 28835115 28790159 NC_060944.1 NC_000020.11 97.81 True relocation, inconsistency = 94187 31810037 31811420 28840236 28838857 NC_060944.1 NC_000020.11 97.11 True relocation, inconsistency = 26486 31782854 31783374 28840933 28840413 NC_060944.1 NC_000020.11 98.85 True relocation, inconsistency = 17257 31763158 31765596 28843373 28840934 NC_060944.1 NC_000020.11 99.34 True relocation, scaffold gap is present, inconsistency = 17457 31721548 31727456 28867524 28861618 NC_060944.1 NC_000020.11 98.82 True fake: scaffold gap size wrong estimation (local) 31712074 31719540 28875905 28868453 NC_060944.1 NC_000020.11 99.3 True indel: indel (> 5bp) 31703798 31712029 28884136 28875906 NC_060944.1 NC_000020.11 99.72 True local misassembly 31694454 31699535 28889218 28884137 NC_060944.1 NC_000020.11 99.33 True local misassembly 31692943 31694058 28890335 28889219 NC_060944.1 NC_000020.11 99.1 True fake: scaffold gap size wrong estimation (local) 31686788 31687787 28898213 28897229 NC_060944.1 NC_000020.11 97.4 True local misassembly 31658437 31686131 28925902 28898214 NC_060944.1 NC_000020.11 99.66 True local misassembly 31643391 31657751 28940263 28925903 NC_060944.1 NC_000020.11 99.72 True local misassembly 31635584 31643390 28948412 28940606 NC_060944.1 NC_000020.11 99.74 True indel: indel (> 5bp) 31634650 31635583 28949519 28948586 NC_060944.1 NC_000020.11 99.89 True local misassembly 31628165 31634138 28955493 28949520 NC_060944.1 NC_000020.11 99.78 True relocation, inconsistency = -56471 31514411 31628164 29125693 29011965 NC_060944.1 NC_000020.11 99.78 True relocation, scaffold gap is present, inconsistency = 489535 30835231 30945800 29204769 29315342 NC_060944.1 NC_000020.11 99.62 True fake: scaffold gap size wrong estimation (local) 30946106 31042970 29315822 29412507 NC_060944.1 NC_000020.11 99.64 True fake: scaffold gap size wrong estimation (local) 31043262 31081131 29413578 29451464 NC_060944.1 NC_000020.11 99.93 True fake: scaffold gap size wrong estimation (local) 31084453 31171003 29452179 29538733 NC_060944.1 NC_000020.11 99.94 True fake: scaffold gap size wrong estimation (local) 31171132 31193920 29540285 29562970 NC_060944.1 NC_000020.11 99.25 True fake: scaffold gap size wrong estimation (local) 31194140 31195185 29563364 29564411 NC_060944.1 NC_000020.11 99.71 True fake: scaffold gap size wrong estimation (local) 31196437 31223720 29565354 29592644 NC_060944.1 NC_000020.11 99.88 True fake: scaffold gap size wrong estimation (local) 31223905 31282751 29592738 29651590 NC_060944.1 NC_000020.11 99.85 True fake: scaffold gap size wrong estimation (local) 31282840 31328352 29651833 29697356 NC_060944.1 NC_000020.11 99.87 True fake: scaffold gap size wrong estimation (local) 31328527 31512210 29697633 29884750 NC_060944.1 NC_000020.11 98.07 True translocation, scaffold gap is present 14736235 14737213 29884851 29885830 NC_060939.1 NC_000020.11 95.61 True local misassembly 14737532 14740351 29885831 29888653 NC_060939.1 NC_000020.11 95.64 True translocation 30812217 30835160 29911897 29888968 NC_060944.1 NC_000020.11 99.71 True local misassembly 30810506 30812216 29914805 29913094 NC_060944.1 NC_000020.11 98.19 True indel: indel (> 5bp) 30808923 30810334 29916217 29914806 NC_060944.1 NC_000020.11 98.58 True fake: scaffold gap size wrong estimation (local) 30806875 30808581 29919299 29917593 NC_060944.1 NC_000020.11 96.07 True indel: indel (> 5bp) 30805544 30806874 29920801 29919470 NC_060944.1 NC_000020.11 97.45 True local misassembly 30803127 30805402 29925446 29923169 NC_060944.1 NC_000020.11 97.54 True indel: indel (> 5bp) 30801543 30802958 29926863 29925447 NC_060944.1 NC_000020.11 97.39 True local misassembly 30798594 30800504 29929670 29927758 NC_060944.1 NC_000020.11 96.65 True local misassembly 30797209 30797911 29930373 29929671 NC_060944.1 NC_000020.11 96.87 True indel: indel (> 5bp) 30795638 30797208 29932114 29930543 NC_060944.1 NC_000020.11 97.46 True local misassembly 30793266 30795296 29934148 29932115 NC_060944.1 NC_000020.11 97.89 True local misassembly 30791829 30793265 29936271 29934833 NC_060944.1 NC_000020.11 97.98 True local misassembly 30786072 30791828 29942889 29937131 NC_060944.1 NC_000020.11 97.6 True local misassembly 30778695 30786071 29951978 29944597 NC_060944.1 NC_000020.11 97.74 True local misassembly 30775900 30778694 29955285 29952489 NC_060944.1 NC_000020.11 97.53 True local misassembly 30772681 30775899 29959871 29956654 NC_060944.1 NC_000020.11 97.86 True local misassembly 30765056 30772680 29967846 29960214 NC_060944.1 NC_000020.11 97.35 True local misassembly 30762134 30765055 29972135 29969214 NC_060944.1 NC_000020.11 97.81 True local misassembly 30757723 30762133 29977920 29973504 NC_060944.1 NC_000020.11 96.47 True fake: scaffold gap size wrong estimation (local) 30755792 30757551 29980289 29978529 NC_060944.1 NC_000020.11 97.44 True local misassembly 30755147 30755791 29982300 29981658 NC_060944.1 NC_000020.11 95.97 True local misassembly 30751520 30754954 29987297 29983864 NC_060944.1 NC_000020.11 97.44 True local misassembly 30746994 30751519 29992339 29987813 NC_060944.1 NC_000020.11 96.77 True local misassembly 30743147 30746648 29995836 29992340 NC_060944.1 NC_000020.11 96.97 True local misassembly 30741806 30742523 29997182 29996464 NC_060944.1 NC_000020.11 97.36 True local misassembly 30739777 30741805 29999892 29997864 NC_060944.1 NC_000020.11 97.44 True local misassembly 30736839 30739776 30003171 30000235 NC_060944.1 NC_000020.11 97.14 True local misassembly 30735277 30736838 30005242 30003682 NC_060944.1 NC_000020.11 97.18 True local misassembly 30733146 30735276 30007887 30005756 NC_060944.1 NC_000020.11 97.75 True local misassembly 30729271 30733145 30012278 30008401 NC_060944.1 NC_000020.11 97.73 True local misassembly 30727237 30728526 30014140 30012851 NC_060944.1 NC_000020.11 97.75 True local misassembly 30724392 30727236 30017494 30014652 NC_060944.1 NC_000020.11 96.94 True fake: scaffold gap size wrong estimation (local) 30723707 30724332 30018301 30017674 NC_060944.1 NC_000020.11 96.34 True local misassembly 30722117 30723706 30020405 30018816 NC_060944.1 NC_000020.11 97.42 True local misassembly 30718548 30721865 30024320 30021001 NC_060944.1 NC_000020.11 97.41 True local misassembly 30714965 30718547 30028417 30024835 NC_060944.1 NC_000020.11 97.88 True local misassembly 30713456 30714964 30030439 30028931 NC_060944.1 NC_000020.11 97.42 True fake: scaffold gap size wrong estimation (local) 30711051 30713090 30032903 30030865 NC_060944.1 NC_000020.11 98.04 True local misassembly 30705599 30708859 30038348 30035097 NC_060944.1 NC_000020.11 95.98 True relocation, scaffold gap is present, inconsistency = -50653 30704771 30705598 30089833 30089002 NC_060944.1 NC_000020.11 97.48 True local misassembly 30702978 30704770 30092140 30090348 NC_060944.1 NC_000020.11 97.88 True local misassembly 30702208 30702783 30093426 30092846 NC_060944.1 NC_000020.11 95.87 True local misassembly 30701292 30701913 30095714 30095094 NC_060944.1 NC_000020.11 97.59 True indel: indel (> 5bp) 30698651 30701188 30098241 30095715 NC_060944.1 NC_000020.11 97.95 True indel: indel (> 5bp) 30696641 30698406 30100182 30098414 NC_060944.1 NC_000020.11 97.34 True local misassembly 30694070 30696146 30105206 30103129 NC_060944.1 NC_000020.11 98.22 True local misassembly 30693248 30694069 30106703 30105881 NC_060944.1 NC_000020.11 97.57 True indel: indel (> 5bp) 30691135 30693075 30108644 30106704 NC_060944.1 NC_000020.11 98.56 True local misassembly 30689771 30691134 30111066 30109703 NC_060944.1 NC_000020.11 98.24 True indel: indel (> 5bp) 30687332 30689574 30113298 30111067 NC_060944.1 NC_000020.11 98.13 True local misassembly 30685355 30687331 30115944 30113980 NC_060944.1 NC_000020.11 97.37 True indel: indel (> 5bp) 30683717 30685354 30117604 30115967 NC_060944.1 NC_000020.11 98.66 True local misassembly 30682865 30683716 30118798 30117947 NC_060944.1 NC_000020.11 98.0 True local misassembly 30681905 30682864 30120100 30119142 NC_060944.1 NC_000020.11 98.23 True local misassembly 30678970 30681696 30122833 30120101 NC_060944.1 NC_000020.11 96.38 True indel: indel (> 5bp) 30674044 30678969 30127931 30123005 NC_060944.1 NC_000020.11 97.58 True local misassembly 30673028 30674043 30129566 30128548 NC_060944.1 NC_000020.11 96.57 True indel: indel (> 5bp) 30672168 30673027 30130592 30129734 NC_060944.1 NC_000020.11 98.26 True indel: indel (> 5bp) 30667690 30671905 30135021 30130809 NC_060944.1 NC_000020.11 98.34 True local misassembly 30368375 30666365 30425128 30135141 NC_060944.1 NC_000020.11 96.77 True relocation, scaffold gap is present, inconsistency = 110393 29927278 30227032 30456078 30761898 NC_060944.1 NC_000020.11 97.78 True relocation, scaffold gap is present, inconsistency = -660990 29616043 29805428 30811899 31001508 NC_060944.1 NC_000020.11 99.43 True relocation, scaffold gap is present, inconsistency = 2935941 32798408 32799000 31058547 31059139 NC_060944.1 NC_000020.11 95.28 True local misassembly 32799372 32800194 31059301 31060133 NC_060944.1 NC_000020.11 95.44 True local misassembly 32801891 32804052 31061154 31063290 NC_060944.1 NC_000020.11 96.99 True local misassembly 32804635 32806412 31064003 31065770 NC_060944.1 NC_000020.11 96.29 True fake: not a misassembly (possible transposable element) 32843242 32844669 31067906 31069308 NC_060944.1 NC_000020.11 95.31 True fake: not a misassembly (possible transposable element) 32812973 32814159 31069489 31070695 NC_060944.1 NC_000020.11 95.86 True indel: indel (> 5bp) 32814160 32815224 31070726 31071790 NC_060944.1 NC_000020.11 97.56 True indel: indel (> 5bp) 32815225 32817559 31071851 31074170 NC_060944.1 NC_000020.11 95.97 True indel: indel (> 5bp) 32817675 32818363 31074171 31074859 NC_060944.1 NC_000020.11 96.81 True indel: indel (> 5bp) 32818364 32819139 31074885 31075665 NC_060944.1 NC_000020.11 95.52 True relocation, scaffold gap is present, inconsistency = -13827 32886721 32888730 31157074 31159091 NC_060944.1 NC_000020.11 98.32 True fake: scaffold gap size wrong estimation (local) 32892637 38035047 31161626 36314370 NC_060944.1 NC_000020.11 99.38 True fake: scaffold gap size wrong estimation (local) 38037019 45868672 36314720 44133906 NC_060944.1 NC_000020.11 99.66 True local misassembly 45869268 66154539 44134563 64334159 NC_060944.1 NC_000020.11 99.2 True CONTIG NC_000020.11 64444167 misassembled 42451420 42607556 5166246 5010001 NC_060945.1 NC_000021.9 99.59 True translocation, scaffold gap is present 6468964 6479804 5227282 5216451 NC_060938.1 NC_000021.9 99.44 True indel: indel (> 5bp) 6464792 6468935 5231424 5227283 NC_060938.1 NC_000021.9 98.33 True indel: indel (> 5bp) 6443002 6464791 5253259 5231457 NC_060938.1 NC_000021.9 99.49 True relocation, inconsistency = -35382 6439294 6443001 5292349 5288642 NC_060938.1 NC_000021.9 99.57 True local misassembly 6421670 6435234 5305931 5292350 NC_060938.1 NC_000021.9 99.48 True local misassembly 6420046 6421669 5307897 5306274 NC_060938.1 NC_000021.9 99.57 True local misassembly 6407395 6419531 5320035 5307898 NC_060938.1 NC_000021.9 99.24 True local misassembly 6401750 6407394 5327859 5322215 NC_060938.1 NC_000021.9 99.33 True local misassembly 6399650 6400183 5328403 5327860 NC_060938.1 NC_000021.9 97.43 True local misassembly 6394163 6398997 5333622 5328783 NC_060938.1 NC_000021.9 99.36 True local misassembly 6371889 6394162 5357776 5335503 NC_060938.1 NC_000021.9 99.5 True local misassembly 6333965 6368651 5392474 5357777 NC_060938.1 NC_000021.9 99.41 True indel: indel (> 5bp) 6332727 6333792 5393540 5392475 NC_060938.1 NC_000021.9 99.16 True translocation, scaffold gap is present 5502132 5507585 5443559 5449012 NC_060937.1 NC_000021.9 99.87 True translocation, scaffold gap is present 4546256 4576440 5499013 5529213 NC_060946.1 NC_000021.9 98.0 True indel: indel (> 5bp) 4576579 4599962 5529214 5552608 NC_060946.1 NC_000021.9 98.27 True indel: indel (> 5bp) 4600030 4611378 5552609 5563947 NC_060946.1 NC_000021.9 98.12 True indel: indel (> 5bp) 4611411 4615891 5563948 5568429 NC_060946.1 NC_000021.9 99.71 True local misassembly 4620953 4632349 5568430 5579831 NC_060946.1 NC_000021.9 99.32 True local misassembly 4632673 4667180 5579832 5614380 NC_060946.1 NC_000021.9 98.64 True indel: indel (> 5bp) 4667203 4678020 5614381 5625187 NC_060946.1 NC_000021.9 98.65 True translocation, scaffold gap is present 1984931 1985485 5687702 5688256 NC_060938.1 NC_000021.9 98.99 True translocation 5654790 5672423 5688257 5705892 NC_060937.1 NC_000021.9 98.99 True indel: indel (> 5bp) 5672452 5682065 5705893 5715509 NC_060937.1 NC_000021.9 99.34 True indel: indel (> 5bp) 5682066 5714596 5715558 5748083 NC_060937.1 NC_000021.9 99.47 True indel: indel (> 5bp) 5714658 5749683 5748084 5783147 NC_060937.1 NC_000021.9 99.36 True indel: indel (> 5bp) 5749708 5762581 5783148 5796009 NC_060937.1 NC_000021.9 99.67 True translocation, scaffold gap is present 2021087 2091572 5846010 5916593 NC_060938.1 NC_000021.9 99.23 True translocation, scaffold gap is present 41732132 41927523 6161371 5966594 NC_060945.1 NC_000021.9 99.66 True translocation, scaffold gap is present 4632673 4662397 6241142 6211392 NC_060946.1 NC_000021.9 98.84 True local misassembly 4620953 4632349 6252544 6241143 NC_060946.1 NC_000021.9 99.32 True local misassembly 4611411 4615891 6257026 6252545 NC_060946.1 NC_000021.9 99.71 True indel: indel (> 5bp) 4600030 4611378 6268364 6257027 NC_060946.1 NC_000021.9 98.12 True indel: indel (> 5bp) 4576579 4599962 6291759 6268365 NC_060946.1 NC_000021.9 98.27 True translocation 1852689 1885089 6324167 6291760 NC_060938.1 NC_000021.9 97.97 True indel: indel (> 5bp) 1799476 1852645 6377258 6324168 NC_060938.1 NC_000021.9 99.17 True translocation, scaffold gap is present 41426700 41582769 6427259 6580181 NC_060945.1 NC_000021.9 97.81 True translocation, scaffold gap is present 2226416 2332439 6630182 6735947 NC_060939.1 NC_000021.9 98.44 True local misassembly 2335609 2338112 6736582 6739085 NC_060939.1 NC_000021.9 98.76 True translocation, scaffold gap is present 11998415 12143619 6789086 6934219 NC_060945.1 NC_000021.9 99.73 True translocation, scaffold gap is present 1844833 1852645 6984220 6992028 NC_060938.1 NC_000021.9 98.59 True indel: indel (> 5bp) 1852689 1885089 6992029 7024436 NC_060938.1 NC_000021.9 97.97 True indel: indel (> 5bp) 1885228 1908597 7024437 7047820 NC_060938.1 NC_000021.9 98.17 True indel: indel (> 5bp) 1908598 1924414 7047851 7063651 NC_060938.1 NC_000021.9 98.52 True local misassembly 1929477 1940872 7063652 7075053 NC_060938.1 NC_000021.9 99.39 True local misassembly 1941203 1942174 7075054 7076025 NC_060938.1 NC_000021.9 98.66 True indel: indel (> 5bp) 1942175 1961428 7076056 7095313 NC_060938.1 NC_000021.9 98.46 True local misassembly 1961429 1989109 7096358 7124033 NC_060938.1 NC_000021.9 99.17 True local misassembly 1989110 2011213 7125559 7147660 NC_060938.1 NC_000021.9 99.57 True indel: indel (> 5bp) 2011214 2013035 7147709 7149527 NC_060938.1 NC_000021.9 99.34 True translocation, scaffold gap is present 9980323 9986192 7199528 7205397 NC_060945.1 NC_000021.9 99.98 True relocation, inconsistency = 8967 9995160 10117624 7205398 7327865 NC_060945.1 NC_000021.9 99.97 True translocation, scaffold gap is present 4548127 4576440 7377882 7406214 NC_060946.1 NC_000021.9 98.01 True indel: indel (> 5bp) 4576579 4599962 7406215 7429608 NC_060946.1 NC_000021.9 98.28 True indel: indel (> 5bp) 4600030 4611378 7429609 7440947 NC_060946.1 NC_000021.9 98.12 True indel: indel (> 5bp) 4611411 4615891 7440948 7445429 NC_060946.1 NC_000021.9 99.71 True local misassembly 4620953 4632349 7445430 7456831 NC_060946.1 NC_000021.9 99.32 True local misassembly 4632673 4667180 7456832 7491384 NC_060946.1 NC_000021.9 98.63 True indel: indel (> 5bp) 4667203 4676719 7491385 7500890 NC_060946.1 NC_000021.9 98.56 True relocation, scaffold gap is present, inconsistency = -146187 4620953 4763389 7692975 7550891 NC_060946.1 NC_000021.9 98.65 True translocation 1923690 1924414 7693700 7692976 NC_060938.1 NC_000021.9 100.0 True translocation, scaffold gap is present 32756290 32878325 7743711 7865746 NC_060945.1 NC_000021.9 99.8 True relocation, scaffold gap is present, inconsistency = -24802056 8126270 8137208 7915747 7926705 NC_060945.1 NC_000021.9 99.58 True indel: indel (> 5bp) 8137264 8137813 7926706 7927255 NC_060945.1 NC_000021.9 100.0 True indel: indel (> 5bp) 8137814 8153280 7927286 7942722 NC_060945.1 NC_000021.9 99.64 True indel: indel (> 5bp) 8153351 8186536 7942723 7975871 NC_060945.1 NC_000021.9 99.55 True local misassembly 8186870 8190610 7975872 7979610 NC_060945.1 NC_000021.9 98.53 True local misassembly 8190944 8192122 7979611 7980787 NC_060945.1 NC_000021.9 99.32 True indel: indel (> 5bp) 8192123 8195931 7980959 7984765 NC_060945.1 NC_000021.9 98.63 True indel: indel (> 5bp) 8195932 8199000 7984937 7988005 NC_060945.1 NC_000021.9 98.5 True local misassembly 8199336 8200318 7988006 7988989 NC_060945.1 NC_000021.9 99.09 True indel: indel (> 5bp) 8200319 8203021 7989161 7991863 NC_060945.1 NC_000021.9 98.71 True local misassembly 8203355 8211514 7991864 8000023 NC_060945.1 NC_000021.9 99.51 True local misassembly 8211848 8231521 8000024 8019693 NC_060945.1 NC_000021.9 98.47 True local misassembly 8231522 8235336 8022074 8025888 NC_060945.1 NC_000021.9 97.54 True local misassembly 8236011 8239243 8025889 8029120 NC_060945.1 NC_000021.9 97.59 True local misassembly 8239917 8243046 8029121 8032249 NC_060945.1 NC_000021.9 98.31 True local misassembly 8243047 8258429 8034459 8049839 NC_060945.1 NC_000021.9 99.27 True translocation, scaffold gap is present 1997479 2158577 8099840 8260971 NC_060938.1 NC_000021.9 98.27 True relocation, scaffold gap is present, inconsistency = -183060 2025518 2116957 8310972 8402411 NC_060938.1 NC_000021.9 99.18 True indel: indel (> 5bp) 2117066 2186520 8402542 8472360 NC_060938.1 NC_000021.9 95.54 True relocation, scaffold gap is present, inconsistency = 6368341 8605642 8676782 8594800 8523141 NC_060938.1 NC_000021.9 96.67 True local misassembly 8600216 8604806 8600425 8595817 NC_060938.1 NC_000021.9 98.16 True local misassembly 8570408 8599611 8629965 8600769 NC_060938.1 NC_000021.9 98.59 True indel: indel (> 5bp) 8565785 8570364 8634547 8629966 NC_060938.1 NC_000021.9 99.02 True indel: indel (> 5bp) 8557289 8565762 8643035 8634548 NC_060938.1 NC_000021.9 98.34 True indel: indel (> 5bp) 8554202 8557260 8646097 8643036 NC_060938.1 NC_000021.9 99.05 True indel: indel (> 5bp) 8548484 8554139 8651757 8646098 NC_060938.1 NC_000021.9 99.01 True indel: indel (> 5bp) 8544137 8548449 8656074 8651758 NC_060938.1 NC_000021.9 98.29 True indel: indel (> 5bp) 8541534 8544108 8658668 8656075 NC_060938.1 NC_000021.9 97.92 True indel: indel (> 5bp) 8537412 8541533 8662803 8658691 NC_060938.1 NC_000021.9 98.84 True local misassembly 8535723 8537018 8664097 8662804 NC_060938.1 NC_000021.9 97.53 True indel: indel (> 5bp) 8523147 8535647 8676595 8664098 NC_060938.1 NC_000021.9 98.66 True local misassembly 8512917 8517027 8680758 8676635 NC_060938.1 NC_000021.9 98.3 True indel: indel (> 5bp) 8512221 8512916 8681551 8680854 NC_060938.1 NC_000021.9 98.28 True indel: indel (> 5bp) 8502053 8512196 8691730 8681552 NC_060938.1 NC_000021.9 98.54 True indel: indel (> 5bp) 8487138 8502052 8706715 8691765 NC_060938.1 NC_000021.9 98.84 True translocation, scaffold gap is present 7551764 7681764 8886604 8756716 NC_060945.1 NC_000021.9 99.9 True relocation, scaffold gap is present, inconsistency = 1631427 5610580 5820336 8986605 9196087 NC_060945.1 NC_000021.9 99.7 True translocation, scaffold gap is present 1450363 1581427 9246088 9377143 NC_060938.1 NC_000021.9 99.95 True translocation, scaffold gap is present 9093690 9264998 9527144 9699765 NC_060945.1 NC_000021.9 98.3 True translocation 6632172 7098286 10169868 9699938 NC_060938.1 NC_000021.9 98.67 True translocation, scaffold gap is present 10765119 10769577 10274327 10269869 NC_060937.1 NC_000021.9 99.96 True translocation, scaffold gap is present 10311249 10803223 10814560 10324328 NC_060945.1 NC_000021.9 98.02 True translocation, scaffold gap is present 11303250 11308758 10864690 10870177 NC_060937.1 NC_000021.9 96.56 True local misassembly 11303120 11308803 10870178 10875859 NC_060937.1 NC_000021.9 97.66 True local misassembly 11303165 11308431 10875860 10881124 NC_060937.1 NC_000021.9 96.63 True translocation, scaffold gap is present 8148029 8151806 10888195 10891981 NC_060938.1 NC_000021.9 96.6 True local misassembly 8147893 8150853 10891982 10894945 NC_060938.1 NC_000021.9 96.22 True local misassembly 8154597 8158513 10894946 10898853 NC_060938.1 NC_000021.9 96.13 True local misassembly 8154590 8158520 10898854 10902779 NC_060938.1 NC_000021.9 97.05 True local misassembly 8162264 8166279 10902780 10906793 NC_060938.1 NC_000021.9 97.22 True local misassembly 8162357 8183035 10906794 10927462 NC_060938.1 NC_000021.9 97.14 True local misassembly 8187969 8190232 10927463 10929726 NC_060938.1 NC_000021.9 97.6 True indel: indel (> 5bp) 8190233 8194010 10929898 10933676 NC_060938.1 NC_000021.9 96.61 True indel: indel (> 5bp) 8194011 8195339 10933848 10935179 NC_060938.1 NC_000021.9 96.17 True relocation, inconsistency = -7316 8188235 8190232 10935391 10937389 NC_060938.1 NC_000021.9 97.45 True indel: indel (> 5bp) 8190233 8194010 10937561 10941337 NC_060938.1 NC_000021.9 97.78 True indel: indel (> 5bp) 8194011 8195368 10941509 10942867 NC_060938.1 NC_000021.9 96.84 True indel: indel (> 5bp) 8195541 8203194 10942868 10950528 NC_060938.1 NC_000021.9 96.92 True indel: indel (> 5bp) 8203367 8207107 10950529 10954271 NC_060938.1 NC_000021.9 97.22 True indel: indel (> 5bp) 8207280 8214932 10954272 10961934 NC_060938.1 NC_000021.9 97.19 True relocation, inconsistency = -7653 8207280 8220315 10961935 10974981 NC_060938.1 NC_000021.9 97.92 True translocation, scaffold gap is present 9995546 10049655 11029452 10975320 NC_060946.1 NC_000021.9 97.5 True translocation, scaffold gap is present 7504404 7505151 11093188 11093935 NC_060938.1 NC_000021.9 98.13 True indel: indel (> 5bp) 7505152 7506203 11094106 11095157 NC_060938.1 NC_000021.9 98.57 True local misassembly 7506204 7508094 11095670 11097560 NC_060938.1 NC_000021.9 98.1 True indel: indel (> 5bp) 7508095 7521149 11097732 11110788 NC_060938.1 NC_000021.9 97.96 True indel: indel (> 5bp) 7521150 7524047 11110958 11113857 NC_060938.1 NC_000021.9 98.1 True translocation, scaffold gap is present 12313623 12317933 11118270 11113958 NC_060946.1 NC_000021.9 98.72 True indel: stretch of mismatches 12311266 12313327 11120627 11118566 NC_060946.1 NC_000021.9 98.5 True translocation, scaffold gap is present 8267768 8268841 11122488 11121415 NC_060945.1 NC_000021.9 97.58 True local misassembly 8267649 8268824 11123972 11122797 NC_060945.1 NC_000021.9 96.85 True translocation, scaffold gap is present 14375758 14376438 11124752 11124073 NC_060939.1 NC_000021.9 98.38 True local misassembly 14377450 14378329 11125964 11125085 NC_060939.1 NC_000021.9 97.27 True indel: indel (<= 5bp) 14375915 14376954 11127498 11126459 NC_060939.1 NC_000021.9 99.81 True translocation 8506162 8509267 11130757 11127652 NC_060945.1 NC_000021.9 98.68 True translocation 13016469 13017256 11135087 11135875 NC_060937.1 NC_000021.9 96.45 True indel: indel (<= 5bp) 13017717 13019040 11136334 11137659 NC_060937.1 NC_000021.9 96.68 True translocation 14375820 14378329 11140586 11138071 NC_060939.1 NC_000021.9 98.25 True translocation 8507718 8509091 11142188 11140821 NC_060945.1 NC_000021.9 95.79 True indel: indel (<= 5bp) 8506354 8507383 11143554 11142525 NC_060945.1 NC_000021.9 99.61 True translocation 7904596 7906937 11144061 11146401 NC_060938.1 NC_000021.9 97.48 True translocation, scaffold gap is present 15512052 15512560 11147242 11146734 NC_060946.1 NC_000021.9 97.64 True relocation, inconsistency = 511182 14995884 15000821 11152236 11147291 NC_060946.1 NC_000021.9 96.11 True relocation, inconsistency = 1980506 12993724 13015377 11173933 11152237 NC_060946.1 NC_000021.9 96.22 True translocation 10627554 10649988 11196960 11174517 NC_060938.1 NC_000021.9 97.22 True translocation 14912941 14919904 11203935 11196961 NC_060946.1 NC_000021.9 96.39 True relocation, inconsistency = 1810129 13083949 13102811 11222810 11203936 NC_060946.1 NC_000021.9 96.71 True translocation 10118527 10135879 11240189 11222811 NC_060938.1 NC_000021.9 96.27 True translocation 12979795 12980699 11241098 11240190 NC_060946.1 NC_000021.9 96.6 True local misassembly 12971245 12983884 11253742 11241099 NC_060946.1 NC_000021.9 96.65 True relocation, inconsistency = -2382603 15350592 15353847 11256998 11253743 NC_060946.1 NC_000021.9 96.85 True relocation, inconsistency = 2452441 12878283 12898150 11276894 11256999 NC_060946.1 NC_000021.9 96.9 True relocation, inconsistency = -2483800 15347457 15362082 11291527 11276895 NC_060946.1 NC_000021.9 96.71 True relocation, inconsistency = -20460 15343567 15367916 11315886 11291528 NC_060946.1 NC_000021.9 97.09 True relocation, inconsistency = 2417002 12922733 12926564 11319721 11315887 NC_060946.1 NC_000021.9 96.75 True local misassembly 12918485 12922390 11323629 11319722 NC_060946.1 NC_000021.9 97.85 True relocation, inconsistency = -2002654 14917261 14920897 11327513 11323871 NC_060946.1 NC_000021.9 97.28 True relocation, inconsistency = -181300 15063705 15098560 11361879 11327514 NC_060946.1 NC_000021.9 95.6 True relocation, inconsistency = 2179522 12876340 12884182 11369727 11361880 NC_060946.1 NC_000021.9 96.99 True relocation, inconsistency = -2540054 15396440 15416152 11389689 11369969 NC_060946.1 NC_000021.9 97.11 True translocation 10447305 10454865 11397261 11389690 NC_060938.1 NC_000021.9 97.55 True translocation 13003439 13026358 11420206 11397262 NC_060946.1 NC_000021.9 96.48 True relocation, inconsistency = -2419785 15412880 15423223 11430558 11420207 NC_060946.1 NC_000021.9 97.4 True relocation, inconsistency = 2448737 12947425 12963389 11447296 11431312 NC_060946.1 NC_000021.9 96.52 True relocation, inconsistency = -2061251 14994266 15008518 11461718 11447454 NC_060946.1 NC_000021.9 96.24 True relocation, inconsistency = 1966876 13015754 13027389 11473361 11461719 NC_060946.1 NC_000021.9 96.46 True relocation, inconsistency = -2397974 15408377 15413407 11478713 11473682 NC_060946.1 NC_000021.9 96.01 True relocation, inconsistency = 113710 15279161 15294666 11494052 11478714 NC_060946.1 NC_000021.9 96.22 True relocation, inconsistency = -58823 15334202 15337704 11497837 11494332 NC_060946.1 NC_000021.9 97.17 True relocation, inconsistency = 2333521 12986610 13000680 11511933 11497838 NC_060946.1 NC_000021.9 96.74 True relocation, inconsistency = -24528 12989270 13011137 11533817 11511934 NC_060946.1 NC_000021.9 96.44 True relocation, inconsistency = -2093330 15072308 15082599 11544112 11533818 NC_060946.1 NC_000021.9 96.57 True translocation 11205441 11221326 11560005 11544113 NC_060938.1 NC_000021.9 97.7 True translocation 15481901 15502317 11580388 11560006 NC_060946.1 NC_000021.9 96.53 True translocation 10136185 10163021 11607079 11580389 NC_060938.1 NC_000021.9 96.02 True translocation 12920973 12930557 11616672 11607080 NC_060946.1 NC_000021.9 96.83 True relocation, inconsistency = -2447007 15342848 15367979 11641850 11616673 NC_060946.1 NC_000021.9 97.13 True relocation, inconsistency = -38531 15371071 15381378 11652159 11641851 NC_060946.1 NC_000021.9 97.35 True local misassembly 15368821 15370386 11653724 11652160 NC_060946.1 NC_000021.9 97.43 True relocation, inconsistency = 2352288 12996972 13016532 11673312 11653725 NC_060946.1 NC_000021.9 96.4 True relocation, inconsistency = 97107 12894327 12899864 11678853 11673313 NC_060946.1 NC_000021.9 96.78 True local misassembly 12887752 12898416 11689533 11678854 NC_060946.1 NC_000021.9 97.26 True relocation, inconsistency = -2508692 15380033 15396443 11705780 11689534 NC_060946.1 NC_000021.9 96.28 True relocation, inconsistency = 2477338 12889711 12902694 11718771 11705781 NC_060946.1 NC_000021.9 96.97 True relocation, inconsistency = -2807829 15685010 15697539 11731303 11718772 NC_060946.1 NC_000021.9 97.33 True relocation, inconsistency = 278678 15383671 15406331 11753978 11731304 NC_060946.1 NC_000021.9 97.14 True relocation, inconsistency = 43987 15333593 15339683 11760067 11753979 NC_060946.1 NC_000021.9 97.11 True translocation 11714192 11725587 11771463 11760068 NC_060938.1 NC_000021.9 97.73 True translocation 12989855 13001967 11783935 11771812 NC_060946.1 NC_000021.9 96.68 True translocation 12429868 12440628 11794931 11784155 NC_060938.1 NC_000021.9 97.68 True translocation 13003428 13021128 11812650 11794932 NC_060946.1 NC_000021.9 96.54 True relocation, inconsistency = -2460020 15455907 15463447 11820193 11812651 NC_060946.1 NC_000021.9 97.07 True relocation, inconsistency = 97854 15340138 15358016 11838108 11820230 NC_060946.1 NC_000021.9 97.19 True relocation, inconsistency = 243932 15093560 15096205 11840754 11838109 NC_060946.1 NC_000021.9 97.21 True translocation 10313799 10319391 11846515 11840914 NC_060938.1 NC_000021.9 97.05 True indel: indel (> 5bp) 10310049 10313628 11850097 11846516 NC_060938.1 NC_000021.9 96.62 True indel: indel (> 5bp) 10305363 10309879 11854621 11850098 NC_060938.1 NC_000021.9 96.04 True translocation 12942840 12967631 11879455 11854622 NC_060946.1 NC_000021.9 96.4 True local misassembly 12938139 12941325 11882793 11879608 NC_060946.1 NC_000021.9 96.67 True local misassembly 12926707 12938138 11895605 11884159 NC_060946.1 NC_000021.9 97.18 True local misassembly 12919235 12925342 11901716 11895606 NC_060946.1 NC_000021.9 97.3 True local misassembly 12900856 12917870 11918740 11901717 NC_060946.1 NC_000021.9 96.62 True relocation, inconsistency = 24532 12871297 12876323 11923773 11918741 NC_060946.1 NC_000021.9 97.21 True relocation, inconsistency = -36800 12894750 12908096 11937126 11923774 NC_060946.1 NC_000021.9 96.93 True local misassembly 12869267 12887934 11955816 11937127 NC_060946.1 NC_000021.9 96.92 True translocation 10266089 10277182 11966753 11955817 NC_060938.1 NC_000021.9 95.36 True translocation 15398072 15415435 11984636 11967265 NC_060946.1 NC_000021.9 97.13 True relocation, inconsistency = 2474623 12913848 12923448 11994240 11984637 NC_060946.1 NC_000021.9 97.08 True relocation, inconsistency = -2528486 15431543 15440851 12005035 11995723 NC_060946.1 NC_000021.9 97.1 True relocation, inconsistency = 1367320 14048804 14064222 12020466 12005036 NC_060946.1 NC_000021.9 97.0 True relocation, inconsistency = -1592123 15632793 15640926 12028607 12020467 NC_060946.1 NC_000021.9 97.4 True relocation, inconsistency = 546474 15072648 15086318 12042293 12028608 NC_060946.1 NC_000021.9 97.19 True translocation 12612922 12618534 12047738 12042294 NC_060938.1 NC_000021.9 96.03 True translocation 14026808 14041841 12062780 12047739 NC_060946.1 NC_000021.9 97.32 True relocation, inconsistency = 1002701 13017549 13024106 12069346 12062781 NC_060946.1 NC_000021.9 96.58 True local misassembly 13009837 13017548 12078427 12070713 NC_060946.1 NC_000021.9 96.94 True local misassembly 13002643 13008474 12084279 12078428 NC_060946.1 NC_000021.9 96.29 True relocation, inconsistency = -2417028 15410494 15419669 12093458 12084281 NC_060946.1 NC_000021.9 97.45 True local misassembly 15393747 15409130 12108851 12093459 NC_060946.1 NC_000021.9 97.3 True indel: indel (> 5bp) 15381247 15393746 12121392 12108889 NC_060946.1 NC_000021.9 97.48 True relocation, inconsistency = -14998 15393924 15396244 12123714 12121393 NC_060946.1 NC_000021.9 97.26 True local misassembly 15380288 15388469 12131902 12123715 NC_060946.1 NC_000021.9 97.33 True relocation, inconsistency = 272915 15092061 15107372 12147214 12131903 NC_060946.1 NC_000021.9 97.03 True relocation, inconsistency = 80465 14985526 15011595 12173347 12147215 NC_060946.1 NC_000021.9 96.18 True relocation, inconsistency = -421547 15391651 15407072 12188756 12173348 NC_060946.1 NC_000021.9 97.16 True relocation, inconsistency = 2545330 12825567 12846076 12209377 12189001 NC_060946.1 NC_000021.9 96.08 True translocation 12426898 12440457 12222949 12209378 NC_060938.1 NC_000021.9 97.59 True translocation 12903069 12925145 12245053 12222950 NC_060946.1 NC_000021.9 96.78 True relocation, inconsistency = -2051737 14932866 14954805 12267020 12245054 NC_060946.1 NC_000021.9 96.65 True relocation, inconsistency = -77660 14996618 15010525 12280936 12267021 NC_060946.1 NC_000021.9 96.51 True relocation, scaffold gap is present, inconsistency = 2683338 12311582 12312180 12282634 12282036 NC_060946.1 NC_000021.9 99.33 True translocation, scaffold gap is present 11297680 11301492 12287087 12283277 NC_060945.1 NC_000021.9 96.8 True local misassembly 11291355 11293012 12292585 12290925 NC_060945.1 NC_000021.9 97.17 True local misassembly 11287460 11289433 12297494 12295523 NC_060945.1 NC_000021.9 97.11 True indel: indel (> 5bp) 11284400 11287288 12300384 12297495 NC_060945.1 NC_000021.9 97.51 True local misassembly 11278561 11284399 12306732 12300894 NC_060945.1 NC_000021.9 97.05 True local misassembly 11274172 11278297 12311620 12307497 NC_060945.1 NC_000021.9 97.31 True local misassembly 11270632 11274171 12316343 12312805 NC_060945.1 NC_000021.9 97.4 True indel: indel (> 5bp) 11267929 11270460 12318872 12316344 NC_060945.1 NC_000021.9 96.29 True indel: indel (> 5bp) 11265478 11267675 12321315 12319119 NC_060945.1 NC_000021.9 97.5 True local misassembly 11263835 11264797 12322282 12321316 NC_060945.1 NC_000021.9 97.31 True indel: indel (> 5bp) 11256199 11263664 12329750 12322283 NC_060945.1 NC_000021.9 97.09 True local misassembly 11254495 11255517 12330776 12329751 NC_060945.1 NC_000021.9 97.56 True indel: indel (> 5bp) 11253583 11254324 12331518 12330777 NC_060945.1 NC_000021.9 96.9 True local misassembly 11251947 11252725 12332647 12331866 NC_060945.1 NC_000021.9 96.42 True indel: indel (> 5bp) 11248207 11251775 12336210 12332648 NC_060945.1 NC_000021.9 98.01 True indel: indel (> 5bp) 11237667 11248035 12346572 12336211 NC_060945.1 NC_000021.9 98.33 True local misassembly 11229956 11236815 12353427 12346573 NC_060945.1 NC_000021.9 97.71 True local misassembly 11228173 11229580 12355722 12354315 NC_060945.1 NC_000021.9 97.8 True local misassembly 11226041 11227491 12357173 12355723 NC_060945.1 NC_000021.9 97.93 True local misassembly 11222483 11226040 12361411 12357854 NC_060945.1 NC_000021.9 98.03 True local misassembly 11220837 11221802 12362379 12361412 NC_060945.1 NC_000021.9 98.66 True indel: indel (> 5bp) 11217992 11220665 12365056 12362380 NC_060945.1 NC_000021.9 98.13 True local misassembly 11216866 11217991 12367033 12365908 NC_060945.1 NC_000021.9 97.96 True local misassembly 11213814 11216108 12369578 12367283 NC_060945.1 NC_000021.9 97.74 True local misassembly 11210073 11213542 12373824 12370359 NC_060945.1 NC_000021.9 98.21 True local misassembly 11201450 11209392 12381776 12373825 NC_060945.1 NC_000021.9 97.6 True local misassembly 11199077 11200769 12383470 12381777 NC_060945.1 NC_000021.9 98.58 True indel: indel (> 5bp) 11198389 11198905 12383987 12383471 NC_060945.1 NC_000021.9 97.49 True fake: not a misassembly (possible transposable element) 11241176 11242788 12386931 12385317 NC_060945.1 NC_000021.9 97.46 True fake: not a misassembly (possible transposable element) 11194319 11195276 12387890 12386932 NC_060945.1 NC_000021.9 98.02 True relocation, inconsistency = -46237 11237667 11240542 12390780 12387904 NC_060945.1 NC_000021.9 98.64 True indel: indel (> 5bp) 11235117 11237495 12393158 12390781 NC_060945.1 NC_000021.9 98.36 True indel: indel (> 5bp) 11223883 11234945 12404223 12393159 NC_060945.1 NC_000021.9 98.21 True local misassembly 11222707 11223882 12406082 12404905 NC_060945.1 NC_000021.9 97.79 True local misassembly 11220703 11222706 12409446 12407443 NC_060945.1 NC_000021.9 98.45 True local misassembly 11218736 11220022 12410733 12409447 NC_060945.1 NC_000021.9 98.68 True local misassembly 11204687 11218102 12425122 12411706 NC_060945.1 NC_000021.9 97.77 True indel: indel (> 5bp) 11199745 11204515 12429899 12425123 NC_060945.1 NC_000021.9 98.12 True relocation, inconsistency = -71893 11262924 11270633 12438613 12430904 NC_060945.1 NC_000021.9 98.08 True local misassembly 11248881 11261063 12451476 12439286 NC_060945.1 NC_000021.9 97.73 True relocation, inconsistency = 69013 11178055 11179867 12453286 12451477 NC_060945.1 NC_000021.9 97.75 True local misassembly 11176177 11177716 12454828 12453287 NC_060945.1 NC_000021.9 98.53 True relocation, inconsistency = 42476 11126568 11133700 12461956 12454829 NC_060945.1 NC_000021.9 97.55 True local misassembly 11122262 11126567 12466938 12462635 NC_060945.1 NC_000021.9 98.19 True indel: indel (> 5bp) 11120173 11122090 12468847 12466939 NC_060945.1 NC_000021.9 97.65 True local misassembly 11112402 11119287 12476103 12469223 NC_060945.1 NC_000021.9 98.55 True relocation, inconsistency = -45030 11154630 11156618 12478905 12476917 NC_060945.1 NC_000021.9 98.09 True local misassembly 11153253 11154629 12480961 12479586 NC_060945.1 NC_000021.9 97.39 True local misassembly 11150388 11153252 12484168 12481304 NC_060945.1 NC_000021.9 98.29 True local misassembly 11149739 11150387 12485838 12485188 NC_060945.1 NC_000021.9 98.62 True local misassembly 11147973 11149364 12488110 12486723 NC_060945.1 NC_000021.9 97.92 True local misassembly 11146137 11147972 12490290 12488454 NC_060945.1 NC_000021.9 98.26 True local misassembly 11140845 11146136 12496603 12491311 NC_060945.1 NC_000021.9 97.96 True local misassembly 11138757 11140506 12498353 12496604 NC_060945.1 NC_000021.9 97.94 True indel: indel (> 5bp) 11135020 11138585 12501925 12498354 NC_060945.1 NC_000021.9 97.56 True indel: indel (> 5bp) 11133817 11134849 12502958 12501926 NC_060945.1 NC_000021.9 97.77 True local misassembly 11131975 11133479 12504464 12502959 NC_060945.1 NC_000021.9 98.41 True local misassembly 11126468 11131974 12510823 12505316 NC_060945.1 NC_000021.9 97.66 True local misassembly 11120417 11125788 12516201 12510824 NC_060945.1 NC_000021.9 98.44 True local misassembly 11117404 11119225 12518022 12516202 NC_060945.1 NC_000021.9 97.37 True local misassembly 11108453 11117403 12527483 12518530 NC_060945.1 NC_000021.9 98.39 True local misassembly 11102378 11107773 12532883 12527484 NC_060945.1 NC_000021.9 98.11 True indel: indel (> 5bp) 11089368 11102206 12545729 12532884 NC_060945.1 NC_000021.9 98.44 True local misassembly 11076885 11089367 12558732 12546239 NC_060945.1 NC_000021.9 98.4 True local misassembly 11074347 11076033 12560423 12558733 NC_060945.1 NC_000021.9 98.64 True indel: indel (> 5bp) 11072465 11074175 12562133 12560424 NC_060945.1 NC_000021.9 98.54 True indel: indel (> 5bp) 11068726 11072294 12565704 12562134 NC_060945.1 NC_000021.9 98.66 True indel: indel (> 5bp) 11061327 11068555 12572940 12565705 NC_060945.1 NC_000021.9 98.24 True local misassembly 11058201 11060137 12574883 12572941 NC_060945.1 NC_000021.9 96.45 True indel: indel (> 5bp) 11057392 11058029 12575523 12574884 NC_060945.1 NC_000021.9 97.97 True local misassembly 11047581 11056878 12584820 12575524 NC_060945.1 NC_000021.9 97.58 True local misassembly 11044592 11047580 12588491 12585502 NC_060945.1 NC_000021.9 98.73 True indel: indel (> 5bp) 11042349 11044420 12590562 12588492 NC_060945.1 NC_000021.9 98.07 True local misassembly 11035084 11041669 12597143 12590563 NC_060945.1 NC_000021.9 98.22 True indel: indel (> 5bp) 11032012 11034912 12600044 12597144 NC_060945.1 NC_000021.9 97.86 True relocation, inconsistency = -74613 11096768 11106624 12609893 12600045 NC_060945.1 NC_000021.9 97.88 True relocation, inconsistency = 72579 11021994 11023679 12612090 12610403 NC_060945.1 NC_000021.9 98.16 True indel: indel (> 5bp) 11021145 11021822 12612768 12612091 NC_060945.1 NC_000021.9 96.17 True indel: indel (> 5bp) 11014514 11020970 12619224 12612769 NC_060945.1 NC_000021.9 97.79 True indel: indel (> 5bp) 11010761 11014342 12622810 12619225 NC_060945.1 NC_000021.9 97.96 True indel: indel (> 5bp) 11008904 11010589 12624497 12622811 NC_060945.1 NC_000021.9 96.92 True indel: indel (> 5bp) 11007034 11008732 12626198 12624498 NC_060945.1 NC_000021.9 98.0 True indel: indel (> 5bp) 11001424 11006862 12631632 12626199 NC_060945.1 NC_000021.9 96.97 True indel: indel (> 5bp) 10999554 11001252 12633325 12631633 NC_060945.1 NC_000021.9 97.12 True indel: indel (> 5bp) 10992074 10999382 12640633 12633326 NC_060945.1 NC_000021.9 98.14 True indel: indel (> 5bp) 10984594 10991902 12647943 12640634 NC_060945.1 NC_000021.9 98.32 True indel: indel (> 5bp) 10977794 10984422 12654556 12647944 NC_060945.1 NC_000021.9 97.75 True indel: indel (> 5bp) 10971504 10977622 12660673 12654557 NC_060945.1 NC_000021.9 98.07 True indel: indel (> 5bp) 10968448 10971332 12663562 12660674 NC_060945.1 NC_000021.9 98.17 True indel: indel (> 5bp) 10967768 10968276 12664071 12663563 NC_060945.1 NC_000021.9 98.04 True relocation, inconsistency = -73435 11038055 11041202 12667220 12664072 NC_060945.1 NC_000021.9 98.57 True local misassembly 11035764 11037374 12668830 12667221 NC_060945.1 NC_000021.9 98.01 True indel: indel (> 5bp) 11035086 11035592 12669338 12668831 NC_060945.1 NC_000021.9 99.02 True indel: indel (> 5bp) 11016840 11034913 12687411 12669339 NC_060945.1 NC_000021.9 98.01 True relocation, inconsistency = -83966 11077054 11100351 12710654 12687866 NC_060945.1 NC_000021.9 95.7 True relocation, inconsistency = -28043 11073497 11104940 12742098 12710811 NC_060945.1 NC_000021.9 97.57 True relocation, inconsistency = -57270 11119264 11130601 12753612 12742264 NC_060945.1 NC_000021.9 97.66 True local misassembly 11118012 11119263 12755376 12754122 NC_060945.1 NC_000021.9 98.65 True local misassembly 11093723 11117172 12779333 12755874 NC_060945.1 NC_000021.9 98.24 True indel: indel (> 5bp) 11078074 11093551 12794805 12779334 NC_060945.1 NC_000021.9 98.25 True indel: indel (> 5bp) 11075027 11077903 12797682 12794806 NC_060945.1 NC_000021.9 98.12 True indel: indel (> 5bp) 11073157 11074855 12799384 12797683 NC_060945.1 NC_000021.9 98.35 True indel: indel (> 5bp) 11071963 11072985 12800409 12799385 NC_060945.1 NC_000021.9 98.34 True indel: indel (> 5bp) 11063130 11071792 12809079 12800410 NC_060945.1 NC_000021.9 98.39 True indel: indel (> 5bp) 11056946 11062958 12815094 12809080 NC_060945.1 NC_000021.9 98.15 True local misassembly 11055819 11056432 12815698 12815095 NC_060945.1 NC_000021.9 95.44 True relocation, inconsistency = -230280 11270632 11286098 12831173 12815699 NC_060945.1 NC_000021.9 97.7 True indel: indel (> 5bp) 11254494 11270460 12847152 12831174 NC_060945.1 NC_000021.9 97.93 True indel: indel (> 5bp) 11253814 11254322 12847661 12847153 NC_060945.1 NC_000021.9 98.23 True indel: indel (> 5bp) 11248887 11253642 12852409 12847662 NC_060945.1 NC_000021.9 97.96 True indel: indel (> 5bp) 11247017 11248715 12854106 12852410 NC_060945.1 NC_000021.9 97.29 True indel: indel (> 5bp) 11239531 11246845 12861422 12854107 NC_060945.1 NC_000021.9 98.44 True indel: indel (> 5bp) 11236987 11239360 12863794 12861423 NC_060945.1 NC_000021.9 98.36 True indel: indel (> 5bp) 11235785 11236815 12864824 12863795 NC_060945.1 NC_000021.9 96.61 True indel: indel (> 5bp) 11223897 11235613 12876560 12864825 NC_060945.1 NC_000021.9 98.36 True indel: indel (> 5bp) 11222707 11223725 12877577 12876561 NC_060945.1 NC_000021.9 98.04 True indel: indel (> 5bp) 11222027 11222535 12878086 12877578 NC_060945.1 NC_000021.9 98.62 True relocation, inconsistency = 226213 10983392 10995813 12890502 12878087 NC_060945.1 NC_000021.9 98.41 True local misassembly 10978984 10982552 12894568 12891000 NC_060945.1 NC_000021.9 98.8 True indel: indel (> 5bp) 10977794 10978812 12895587 12894569 NC_060945.1 NC_000021.9 99.02 True indel: indel (> 5bp) 10975244 10977622 12897970 12895588 NC_060945.1 NC_000021.9 98.78 True indel: indel (> 5bp) 10970314 10975072 12902721 12897971 NC_060945.1 NC_000021.9 98.47 True indel: indel (> 5bp) 10967768 10970146 12905093 12902722 NC_060945.1 NC_000021.9 98.36 True indel: indel (> 5bp) 10964696 10967596 12907997 12905094 NC_060945.1 NC_000021.9 97.83 True relocation, inconsistency = -227230 11190115 11191925 12909811 12907998 NC_060945.1 NC_000021.9 98.25 True local misassembly 11186727 11190114 12913541 12910153 NC_060945.1 NC_000021.9 97.52 True local misassembly 11184802 11186726 12915808 12913884 NC_060945.1 NC_000021.9 97.66 True relocation, scaffold gap is present, inconsistency = 73372 11310099 24337928 12965809 25979809 NC_060945.1 NC_000021.9 99.43 True indel: indel (> 5bp) 24338028 24359979 25979894 26001843 NC_060945.1 NC_000021.9 99.9 True fake: not a misassembly (possible transposable element) 24359980 24360520 26002384 26001844 NC_060945.1 NC_000021.9 99.82 True fake: not a misassembly (possible transposable element) 24360521 30152375 26002386 31784465 NC_060945.1 NC_000021.9 99.61 True fake: scaffold gap size wrong estimation (local) 30153431 30712455 31785142 32342652 NC_060945.1 NC_000021.9 99.42 True indel: indel (> 5bp) 30712541 37588543 32342710 39203959 NC_060945.1 NC_000021.9 99.38 True indel: stretch of mismatches 37588700 37968299 39204116 39583818 NC_060945.1 NC_000021.9 99.68 True indel: indel (> 5bp) 37968563 38416077 39584123 40028842 NC_060945.1 NC_000021.9 98.93 True local misassembly 38420437 41607256 40033182 43212281 NC_060945.1 NC_000021.9 99.16 True relocation, scaffold gap is present, inconsistency = -40267 41617200 44468479 43262492 46090787 NC_060945.1 NC_000021.9 98.38 True local misassembly 44468850 45086134 46090919 46699864 NC_060945.1 NC_000021.9 97.98 True CONTIG NC_000021.9 46709983 misassembled 8605850 8667042 10571582 10510001 NC_060938.1 NC_000022.11 96.98 True local misassembly 8600216 8604874 10577422 10572745 NC_060938.1 NC_000022.11 98.2 True local misassembly 8570408 8599613 10606962 10577764 NC_060938.1 NC_000022.11 98.59 True indel: indel (> 5bp) 8561038 8570364 10616291 10606963 NC_060938.1 NC_000022.11 98.65 True indel: indel (> 5bp) 8554238 8561011 10623091 10616292 NC_060938.1 NC_000022.11 98.6 True indel: indel (> 5bp) 8548509 8554177 10628765 10623092 NC_060938.1 NC_000022.11 98.96 True indel: indel (> 5bp) 8542650 8548508 10634662 10628802 NC_060938.1 NC_000022.11 98.67 True indel: indel (> 5bp) 8541540 8542649 10635804 10634695 NC_060938.1 NC_000022.11 99.1 True indel: indel (> 5bp) 8537412 8541539 10639918 10635827 NC_060938.1 NC_000022.11 98.04 True local misassembly 8535723 8537018 10641215 10639919 NC_060938.1 NC_000022.11 97.84 True indel: indel (> 5bp) 8523147 8535647 10653725 10641216 NC_060938.1 NC_000022.11 98.67 True local misassembly 8512917 8517027 10657887 10653765 NC_060938.1 NC_000022.11 98.37 True indel: indel (> 5bp) 8510986 8512916 10659910 10657983 NC_060938.1 NC_000022.11 99.02 True indel: indel (> 5bp) 8497336 8510985 10673616 10659934 NC_060938.1 NC_000022.11 96.61 True local misassembly 8480667 8497335 10690626 10673941 NC_060938.1 NC_000022.11 98.58 True translocation 6444912 6449432 10690627 10695157 NC_060946.1 NC_000022.11 97.15 True relocation, inconsistency = 4780278 11229791 11233478 10698910 10695238 NC_060946.1 NC_000022.11 97.75 True local misassembly 11224117 11228083 10703923 10699961 NC_060946.1 NC_000022.11 98.71 True local misassembly 11211485 11223646 10717147 10705010 NC_060946.1 NC_000022.11 98.68 True local misassembly 11208684 11209987 10724556 10723268 NC_060946.1 NC_000022.11 95.32 True indel: indel (> 5bp) 11206775 11208643 10726425 10724557 NC_060946.1 NC_000022.11 95.13 True local misassembly 11205154 11205998 10727716 10726872 NC_060946.1 NC_000022.11 95.03 True indel: indel (> 5bp) 11204114 11204693 10728651 10728067 NC_060946.1 NC_000022.11 96.58 True local misassembly 11200711 11203359 10731926 10729292 NC_060946.1 NC_000022.11 97.43 True indel: indel (> 5bp) 11186444 11200635 10746097 10731927 NC_060946.1 NC_000022.11 98.24 True indel: indel (> 5bp) 11183261 11186413 10749238 10746098 NC_060946.1 NC_000022.11 98.6 True relocation, inconsistency = 27530 11154231 11155730 10750738 10749239 NC_060946.1 NC_000022.11 98.8 True indel: indel (> 5bp) 11143011 11154209 10761942 10750739 NC_060946.1 NC_000022.11 97.85 True indel: indel (> 5bp) 11130211 11142964 10774711 10761943 NC_060946.1 NC_000022.11 97.49 True relocation, inconsistency = 20764 11106053 11109446 10778093 10774712 NC_060946.1 NC_000022.11 96.67 True indel: indel (> 5bp) 11102789 11105767 10781349 10778367 NC_060946.1 NC_000022.11 97.59 True relocation, scaffold gap is present, inconsistency = 5279049 16438111 16478031 10834644 10874572 NC_060946.1 NC_000022.11 99.75 True relocation, scaffold gap is present, inconsistency = -3839422 12688610 12730777 10924573 10966724 NC_060946.1 NC_000022.11 99.95 True relocation, scaffold gap is present, inconsistency = -1730353 11050425 11102678 11016725 11068987 NC_060946.1 NC_000022.11 99.94 True relocation, scaffold gap is present, inconsistency = 6004342 17157021 17198731 11118988 11160921 NC_060946.1 NC_000022.11 98.23 True translocation, scaffold gap is present 9723869 9727647 11214699 11210922 NC_060938.1 NC_000022.11 99.84 True relocation, inconsistency = 10935 9590619 9712218 11337027 11215415 NC_060938.1 NC_000022.11 99.89 True indel: indel (> 5bp) 9549565 9590588 11378056 11337028 NC_060938.1 NC_000022.11 99.89 True relocation, scaffold gap is present, inconsistency = 4922524 4569687 4577040 11435421 11428057 NC_060938.1 NC_000022.11 98.32 True indel: indel (> 5bp) 4563297 4569686 11441843 11435449 NC_060938.1 NC_000022.11 98.62 True indel: indel (> 5bp) 4550924 4563200 11454134 11441844 NC_060938.1 NC_000022.11 98.56 True indel: indel (> 5bp) 4550060 4550875 11454950 11454135 NC_060938.1 NC_000022.11 98.65 True local misassembly 4548022 4549313 11456751 11455457 NC_060938.1 NC_000022.11 99.0 True local misassembly 4541322 4542050 11457554 11456807 NC_060938.1 NC_000022.11 95.99 True indel: indel (> 5bp) 4536024 4541321 11462900 11457603 NC_060938.1 NC_000022.11 98.98 True indel: indel (> 5bp) 4534423 4536023 11464549 11462949 NC_060938.1 NC_000022.11 99.06 True indel: indel (> 5bp) 4533343 4534374 11465581 11464550 NC_060938.1 NC_000022.11 99.03 True local misassembly 4527074 4532525 11471088 11465638 NC_060938.1 NC_000022.11 98.73 True indel: indel (> 5bp) 4509497 4527025 11488628 11471089 NC_060938.1 NC_000022.11 98.73 True indel: indel (> 5bp) 4500863 4509496 11497337 11488684 NC_060938.1 NC_000022.11 98.58 True translocation, scaffold gap is present 12558818 12642763 11631288 11547338 NC_060946.1 NC_000022.11 99.95 True relocation, scaffold gap is present, inconsistency = 1827358 10638112 10681459 11724629 11681289 NC_060946.1 NC_000022.11 99.93 True relocation, scaffold gap is present, inconsistency = 810365 9756950 9777736 11774640 11795465 NC_060946.1 NC_000022.11 96.66 True indel: indel (> 5bp) 9777921 9797855 11795466 11815401 NC_060946.1 NC_000022.11 98.75 True local misassembly 9797856 9805724 11815693 11823567 NC_060946.1 NC_000022.11 98.72 True indel: indel (> 5bp) 9805759 9807312 11823568 11825122 NC_060946.1 NC_000022.11 99.16 True indel: indel (> 5bp) 9807313 9810414 11825152 11828259 NC_060946.1 NC_000022.11 99.2 True indel: indel (> 5bp) 9810442 9847880 11828260 11865696 NC_060946.1 NC_000022.11 99.52 True translocation 49334197 49344231 11865697 11875734 NC_060928.1 NC_000022.11 98.55 True local misassembly 49344856 49372341 11875735 11903213 NC_060928.1 NC_000022.11 98.66 True indel: indel (> 5bp) 49372342 49377204 11903251 11908109 NC_060928.1 NC_000022.11 98.35 True indel: indel (> 5bp) 49377227 49386027 11908110 11916895 NC_060928.1 NC_000022.11 98.02 True indel: indel (> 5bp) 49386028 49392545 11916922 11923426 NC_060928.1 NC_000022.11 98.05 True translocation 127882129 127885760 11923427 11927061 NC_060925.1 NC_000022.11 98.76 True translocation 5264841 5268562 11937994 11934268 NC_060937.1 NC_000022.11 98.15 True indel: indel (> 5bp) 5264230 5264792 11938557 11937995 NC_060937.1 NC_000022.11 98.58 True indel: indel (> 5bp) 5256635 5264229 11946200 11938606 NC_060937.1 NC_000022.11 97.47 True indel: indel (> 5bp) 5249019 5256634 11953975 11946323 NC_060937.1 NC_000022.11 97.7 True indel: indel (> 5bp) 5248516 5249018 11954594 11954092 NC_060937.1 NC_000022.11 96.42 True indel: indel (> 5bp) 5234533 5248476 11968531 11954595 NC_060937.1 NC_000022.11 97.6 True local misassembly 5225933 5233599 11976774 11969141 NC_060937.1 NC_000022.11 97.68 True indel: indel (> 5bp) 5225248 5225932 11977534 11976859 NC_060937.1 NC_000022.11 97.08 True translocation, scaffold gap is present 9748956 9946971 12225588 12027556 NC_060946.1 NC_000022.11 99.97 True translocation, scaffold gap is present 9300680 9463488 12438690 12275589 NC_060938.1 NC_000022.11 99.39 True translocation, scaffold gap is present 12114393 12267433 12488691 12641730 NC_060946.1 NC_000022.11 99.82 True translocation, scaffold gap is present 4053616 4087723 12726179 12691731 NC_060938.1 NC_000022.11 98.66 True relocation, scaffold gap is present, inconsistency = 55737 3905835 3947629 12818137 12776429 NC_060938.1 NC_000022.11 99.4 True translocation, scaffold gap is present 1676128 1712805 12868138 12904788 NC_060939.1 NC_000022.11 99.79 True translocation, scaffold gap is present 11303250 11308758 12954918 12960405 NC_060937.1 NC_000022.11 96.56 True local misassembly 11303120 11308803 12960406 12966087 NC_060937.1 NC_000022.11 97.66 True local misassembly 11303165 11308431 12966088 12971352 NC_060937.1 NC_000022.11 96.63 True translocation 14101630 14107582 12971371 12977325 NC_060939.1 NC_000022.11 97.9 True translocation, scaffold gap is present 8867109 8875812 12977426 12986171 NC_060938.1 NC_000022.11 98.87 True fake: scaffold gap size wrong estimation (local) 8884879 8902500 12994034 13011653 NC_060938.1 NC_000022.11 99.88 True fake: scaffold gap size wrong estimation (local) 8904835 8911579 13014650 13021322 NC_060938.1 NC_000022.11 97.93 True translocation, scaffold gap is present 8211883 8236218 13045786 13021429 NC_060945.1 NC_000022.11 96.74 True local misassembly 8207600 8211550 13049734 13045787 NC_060945.1 NC_000022.11 97.42 True local misassembly 8203355 8207266 13053646 13049735 NC_060945.1 NC_000022.11 97.55 True local misassembly 8199108 8203021 13057560 13053647 NC_060945.1 NC_000022.11 97.04 True local misassembly 8190944 8198134 13065220 13058030 NC_060945.1 NC_000022.11 97.79 True translocation 8183713 8187851 13065259 13069402 NC_060938.1 NC_000022.11 96.38 True indel: indel (> 5bp) 8188235 8190232 13069616 13071614 NC_060938.1 NC_000022.11 97.45 True indel: indel (> 5bp) 8190233 8194010 13071786 13075562 NC_060938.1 NC_000022.11 97.78 True indel: indel (> 5bp) 8194011 8195368 13075734 13077092 NC_060938.1 NC_000022.11 96.84 True indel: indel (> 5bp) 8195541 8203194 13077093 13084753 NC_060938.1 NC_000022.11 96.92 True indel: indel (> 5bp) 8203367 8207107 13084754 13088496 NC_060938.1 NC_000022.11 97.22 True indel: indel (> 5bp) 8207280 8214932 13088497 13096159 NC_060938.1 NC_000022.11 97.19 True relocation, inconsistency = -7653 8207280 8220315 13096160 13109206 NC_060938.1 NC_000022.11 97.92 True translocation, scaffold gap is present 9995546 10049655 13163677 13109545 NC_060946.1 NC_000022.11 97.5 True translocation, scaffold gap is present 7504404 7505151 13227413 13228160 NC_060938.1 NC_000022.11 98.13 True indel: indel (> 5bp) 7505152 7506203 13228331 13229382 NC_060938.1 NC_000022.11 98.57 True local misassembly 7506204 7508094 13229895 13231785 NC_060938.1 NC_000022.11 98.1 True indel: indel (> 5bp) 7508095 7521149 13231957 13245013 NC_060938.1 NC_000022.11 97.96 True indel: indel (> 5bp) 7521150 7524047 13245183 13248082 NC_060938.1 NC_000022.11 98.1 True translocation, scaffold gap is present 12313623 12317933 13252495 13248183 NC_060946.1 NC_000022.11 98.72 True indel: stretch of mismatches 12311266 12313327 13254852 13252791 NC_060946.1 NC_000022.11 98.5 True translocation, scaffold gap is present 8267768 8268841 13256713 13255640 NC_060945.1 NC_000022.11 97.58 True local misassembly 8267649 8268824 13258197 13257022 NC_060945.1 NC_000022.11 96.85 True translocation, scaffold gap is present 14375758 14376438 13258977 13258298 NC_060939.1 NC_000022.11 98.38 True local misassembly 14377450 14378329 13260189 13259310 NC_060939.1 NC_000022.11 97.27 True indel: indel (<= 5bp) 14375915 14376954 13261723 13260684 NC_060939.1 NC_000022.11 99.81 True translocation 8506162 8509267 13264982 13261877 NC_060945.1 NC_000022.11 98.68 True translocation 13016469 13017256 13269312 13270100 NC_060937.1 NC_000022.11 96.45 True indel: indel (<= 5bp) 13017717 13019040 13270559 13271884 NC_060937.1 NC_000022.11 96.68 True translocation 14375820 14378329 13274811 13272296 NC_060939.1 NC_000022.11 98.25 True translocation 8507718 8509091 13276413 13275046 NC_060945.1 NC_000022.11 95.79 True indel: indel (<= 5bp) 8506354 8507383 13277779 13276750 NC_060945.1 NC_000022.11 99.61 True translocation 7904596 7906937 13278286 13280626 NC_060938.1 NC_000022.11 97.48 True relocation, scaffold gap is present, inconsistency = 2148787 10056057 10060242 13280959 13285143 NC_060938.1 NC_000022.11 99.81 True translocation, scaffold gap is present 15512052 15512560 13285752 13285244 NC_060946.1 NC_000022.11 97.64 True relocation, inconsistency = 511182 14995884 15000821 13290746 13285801 NC_060946.1 NC_000022.11 96.11 True relocation, inconsistency = 1980506 12993724 13015377 13312443 13290747 NC_060946.1 NC_000022.11 96.22 True translocation 10627554 10649988 13335470 13313027 NC_060938.1 NC_000022.11 97.22 True translocation 14912941 14919904 13342445 13335471 NC_060946.1 NC_000022.11 96.39 True relocation, inconsistency = 1810129 13083949 13102811 13361320 13342446 NC_060946.1 NC_000022.11 96.71 True translocation 10118527 10135879 13378699 13361321 NC_060938.1 NC_000022.11 96.27 True translocation 12979795 12980699 13379608 13378700 NC_060946.1 NC_000022.11 96.6 True local misassembly 12971245 12983884 13392252 13379609 NC_060946.1 NC_000022.11 96.65 True relocation, inconsistency = -2382603 15349004 15353847 13397097 13392253 NC_060946.1 NC_000022.11 96.85 True relocation, inconsistency = 2421095 12908324 12927908 13416711 13397098 NC_060946.1 NC_000022.11 96.71 True relocation, inconsistency = -2452452 15347457 15360775 13430037 13416712 NC_060946.1 NC_000022.11 96.71 True relocation, inconsistency = -20460 15343567 15367916 13454396 13430038 NC_060946.1 NC_000022.11 97.09 True relocation, inconsistency = 2417002 12922733 12926564 13458231 13454397 NC_060946.1 NC_000022.11 96.75 True local misassembly 12918485 12922390 13462139 13458232 NC_060946.1 NC_000022.11 97.85 True relocation, inconsistency = -2002654 14917261 14920897 13466023 13462381 NC_060946.1 NC_000022.11 97.28 True relocation, inconsistency = -181300 15063705 15098560 13500389 13466024 NC_060946.1 NC_000022.11 95.6 True relocation, inconsistency = 2179522 12876340 12884182 13508237 13500390 NC_060946.1 NC_000022.11 96.99 True relocation, inconsistency = -2540054 15396440 15416152 13528199 13508479 NC_060946.1 NC_000022.11 97.11 True translocation 10447305 10454865 13535771 13528200 NC_060938.1 NC_000022.11 97.55 True translocation 13003439 13026358 13558716 13535772 NC_060946.1 NC_000022.11 96.48 True relocation, inconsistency = -2419785 15412880 15423223 13569068 13558717 NC_060946.1 NC_000022.11 97.4 True relocation, inconsistency = 2448737 12947425 12963389 13585806 13569822 NC_060946.1 NC_000022.11 96.52 True relocation, inconsistency = -2061251 14994266 15008518 13600228 13585964 NC_060946.1 NC_000022.11 96.24 True relocation, inconsistency = 1966876 13015754 13027389 13611871 13600229 NC_060946.1 NC_000022.11 96.46 True relocation, inconsistency = -2397974 15408377 15413407 13617223 13612192 NC_060946.1 NC_000022.11 96.01 True relocation, inconsistency = 113710 15279161 15294666 13632562 13617224 NC_060946.1 NC_000022.11 96.22 True relocation, inconsistency = -58823 15334202 15337704 13636347 13632842 NC_060946.1 NC_000022.11 97.17 True relocation, inconsistency = 2333521 12986610 13000680 13650443 13636348 NC_060946.1 NC_000022.11 96.74 True relocation, inconsistency = -24528 12989270 13011137 13672327 13650444 NC_060946.1 NC_000022.11 96.44 True relocation, inconsistency = -2093330 15072308 15082599 13682622 13672328 NC_060946.1 NC_000022.11 96.57 True translocation 11205441 11221326 13698515 13682623 NC_060938.1 NC_000022.11 97.7 True translocation 15481901 15502317 13718898 13698516 NC_060946.1 NC_000022.11 96.53 True translocation 10136185 10163021 13745589 13718899 NC_060938.1 NC_000022.11 96.02 True translocation 12920973 12930557 13755182 13745590 NC_060946.1 NC_000022.11 96.83 True relocation, inconsistency = -2447007 15342848 15367979 13780360 13755183 NC_060946.1 NC_000022.11 97.13 True relocation, inconsistency = -38531 15371071 15381378 13790669 13780361 NC_060946.1 NC_000022.11 97.35 True local misassembly 15368821 15370386 13792234 13790670 NC_060946.1 NC_000022.11 97.43 True relocation, inconsistency = 2352288 12996972 13016532 13811822 13792235 NC_060946.1 NC_000022.11 96.4 True relocation, inconsistency = 97107 12894327 12899864 13817363 13811823 NC_060946.1 NC_000022.11 96.78 True local misassembly 12887752 12898416 13828043 13817364 NC_060946.1 NC_000022.11 97.26 True relocation, inconsistency = -2508692 15380033 15396443 13844290 13828044 NC_060946.1 NC_000022.11 96.28 True relocation, inconsistency = 2477338 12889711 12902694 13857281 13844291 NC_060946.1 NC_000022.11 96.97 True relocation, inconsistency = -2807829 15685010 15697539 13869813 13857282 NC_060946.1 NC_000022.11 97.33 True relocation, inconsistency = 278678 15383671 15406331 13892488 13869814 NC_060946.1 NC_000022.11 97.14 True relocation, inconsistency = 43987 15333593 15339683 13898577 13892489 NC_060946.1 NC_000022.11 97.11 True translocation 11714192 11725587 13909973 13898578 NC_060938.1 NC_000022.11 97.73 True translocation 12989855 13001967 13922445 13910322 NC_060946.1 NC_000022.11 96.68 True translocation 12429868 12440628 13933441 13922665 NC_060938.1 NC_000022.11 97.68 True translocation 13003428 13021128 13951160 13933442 NC_060946.1 NC_000022.11 96.54 True relocation, inconsistency = -2460020 15455907 15463447 13958703 13951161 NC_060946.1 NC_000022.11 97.07 True relocation, inconsistency = 97854 15340138 15358016 13976618 13958740 NC_060946.1 NC_000022.11 97.19 True relocation, inconsistency = 246660 15090837 15093477 13979260 13976619 NC_060946.1 NC_000022.11 97.13 True translocation 10313799 10319391 13985025 13979424 NC_060938.1 NC_000022.11 97.05 True indel: indel (> 5bp) 10310049 10313628 13988607 13985026 NC_060938.1 NC_000022.11 96.62 True indel: indel (> 5bp) 10305363 10309879 13993131 13988608 NC_060938.1 NC_000022.11 96.04 True translocation 12942840 12967631 14017965 13993132 NC_060946.1 NC_000022.11 96.4 True local misassembly 12938139 12941325 14021303 14018118 NC_060946.1 NC_000022.11 96.67 True local misassembly 12926707 12938138 14034115 14022669 NC_060946.1 NC_000022.11 97.18 True local misassembly 12919235 12925342 14040226 14034116 NC_060946.1 NC_000022.11 97.3 True local misassembly 12900856 12917870 14057250 14040227 NC_060946.1 NC_000022.11 96.62 True relocation, inconsistency = 24532 12871297 12876323 14062283 14057251 NC_060946.1 NC_000022.11 97.21 True relocation, inconsistency = -36800 12894750 12908096 14075636 14062284 NC_060946.1 NC_000022.11 96.93 True local misassembly 12869267 12887934 14094326 14075637 NC_060946.1 NC_000022.11 96.92 True translocation 10266089 10277182 14105263 14094327 NC_060938.1 NC_000022.11 95.36 True translocation 15398072 15415435 14123146 14105775 NC_060946.1 NC_000022.11 97.13 True relocation, inconsistency = 2474623 12913848 12923448 14132750 14123147 NC_060946.1 NC_000022.11 97.08 True relocation, inconsistency = -2528486 15430254 15440851 14144835 14134233 NC_060946.1 NC_000022.11 97.1 True relocation, inconsistency = 25230 15390645 15405023 14159226 14144836 NC_060946.1 NC_000022.11 96.91 True relocation, inconsistency = -250032 15632793 15640676 14167117 14159227 NC_060946.1 NC_000022.11 97.4 True relocation, inconsistency = 546474 15072648 15086318 14180803 14167118 NC_060946.1 NC_000022.11 97.19 True translocation 12612922 12618534 14186248 14180804 NC_060938.1 NC_000022.11 96.03 True translocation 14026808 14041841 14201290 14186249 NC_060946.1 NC_000022.11 97.32 True relocation, inconsistency = 1002701 13017747 13024106 14207658 14201291 NC_060946.1 NC_000022.11 96.58 True relocation, inconsistency = -172843 13171507 13190589 14226733 14207659 NC_060946.1 NC_000022.11 97.09 True relocation, inconsistency = -2244222 15410494 15415728 14231968 14226734 NC_060946.1 NC_000022.11 97.45 True local misassembly 15393747 15409130 14247361 14231969 NC_060946.1 NC_000022.11 97.3 True indel: indel (> 5bp) 15381247 15393746 14259902 14247399 NC_060946.1 NC_000022.11 97.48 True relocation, inconsistency = -14998 15393924 15396244 14262224 14259903 NC_060946.1 NC_000022.11 97.26 True local misassembly 15380288 15388469 14270412 14262225 NC_060946.1 NC_000022.11 97.33 True relocation, inconsistency = 272915 15092061 15107372 14285724 14270413 NC_060946.1 NC_000022.11 97.03 True relocation, inconsistency = 80465 14985526 15011595 14311857 14285725 NC_060946.1 NC_000022.11 96.18 True relocation, inconsistency = -421547 15391651 15407072 14327266 14311858 NC_060946.1 NC_000022.11 97.16 True relocation, inconsistency = 2545330 12825567 12846076 14347887 14327511 NC_060946.1 NC_000022.11 96.08 True translocation 12426898 12440457 14361459 14347888 NC_060938.1 NC_000022.11 97.59 True translocation 12903069 12925145 14383563 14361460 NC_060946.1 NC_000022.11 96.78 True relocation, inconsistency = -2051737 14932866 14954805 14405530 14383564 NC_060946.1 NC_000022.11 96.65 True relocation, inconsistency = -77660 14996618 15010525 14419446 14405531 NC_060946.1 NC_000022.11 96.51 True relocation, scaffold gap is present, inconsistency = 2683338 12311582 12312180 14421144 14420546 NC_060946.1 NC_000022.11 99.33 True translocation, scaffold gap is present 11297680 11301492 14425597 14421787 NC_060945.1 NC_000022.11 96.8 True local misassembly 11291355 11293012 14431095 14429435 NC_060945.1 NC_000022.11 97.17 True local misassembly 11287460 11289433 14436004 14434033 NC_060945.1 NC_000022.11 97.11 True indel: indel (> 5bp) 11284400 11287288 14438894 14436005 NC_060945.1 NC_000022.11 97.51 True local misassembly 11278561 11284399 14445242 14439404 NC_060945.1 NC_000022.11 97.05 True local misassembly 11274172 11278297 14450130 14446007 NC_060945.1 NC_000022.11 97.31 True local misassembly 11270632 11274171 14454853 14451315 NC_060945.1 NC_000022.11 97.4 True indel: indel (> 5bp) 11267929 11270460 14457382 14454854 NC_060945.1 NC_000022.11 96.29 True indel: indel (> 5bp) 11265478 11267675 14459825 14457629 NC_060945.1 NC_000022.11 97.5 True local misassembly 11263835 11264797 14460792 14459826 NC_060945.1 NC_000022.11 97.31 True indel: indel (> 5bp) 11256199 11263664 14468260 14460793 NC_060945.1 NC_000022.11 97.09 True local misassembly 11254495 11255517 14469286 14468261 NC_060945.1 NC_000022.11 97.56 True indel: indel (> 5bp) 11253583 11254324 14470028 14469287 NC_060945.1 NC_000022.11 96.9 True local misassembly 11251947 11252725 14471157 14470376 NC_060945.1 NC_000022.11 96.42 True indel: indel (> 5bp) 11248207 11251775 14474720 14471158 NC_060945.1 NC_000022.11 98.01 True indel: indel (> 5bp) 11237667 11248035 14485082 14474721 NC_060945.1 NC_000022.11 98.33 True local misassembly 11229956 11236815 14491937 14485083 NC_060945.1 NC_000022.11 97.71 True local misassembly 11228173 11229580 14494232 14492825 NC_060945.1 NC_000022.11 97.8 True local misassembly 11226041 11227491 14495683 14494233 NC_060945.1 NC_000022.11 97.93 True local misassembly 11222483 11226040 14499921 14496364 NC_060945.1 NC_000022.11 98.03 True local misassembly 11220837 11221802 14500889 14499922 NC_060945.1 NC_000022.11 98.66 True indel: indel (> 5bp) 11217992 11220665 14503566 14500890 NC_060945.1 NC_000022.11 98.13 True local misassembly 11216866 11217991 14505543 14504418 NC_060945.1 NC_000022.11 97.96 True local misassembly 11213814 11216108 14508088 14505793 NC_060945.1 NC_000022.11 97.74 True local misassembly 11210073 11213542 14512334 14508869 NC_060945.1 NC_000022.11 98.21 True local misassembly 11201450 11209392 14520286 14512335 NC_060945.1 NC_000022.11 97.6 True local misassembly 11199077 11200769 14521980 14520287 NC_060945.1 NC_000022.11 98.58 True indel: indel (> 5bp) 11198389 11198905 14522497 14521981 NC_060945.1 NC_000022.11 97.49 True fake: not a misassembly (possible transposable element) 11241176 11242788 14525441 14523827 NC_060945.1 NC_000022.11 97.46 True fake: not a misassembly (possible transposable element) 11194319 11195276 14526400 14525442 NC_060945.1 NC_000022.11 98.02 True relocation, inconsistency = -46237 11237667 11240542 14529290 14526414 NC_060945.1 NC_000022.11 98.64 True indel: indel (> 5bp) 11235117 11237495 14531668 14529291 NC_060945.1 NC_000022.11 98.36 True indel: indel (> 5bp) 11223883 11234945 14542733 14531669 NC_060945.1 NC_000022.11 98.21 True local misassembly 11222707 11223882 14544592 14543415 NC_060945.1 NC_000022.11 97.79 True local misassembly 11220703 11222706 14547956 14545953 NC_060945.1 NC_000022.11 98.45 True local misassembly 11218736 11220022 14549243 14547957 NC_060945.1 NC_000022.11 98.68 True local misassembly 11204687 11218102 14563632 14550216 NC_060945.1 NC_000022.11 97.77 True indel: indel (> 5bp) 11199745 11204515 14568409 14563633 NC_060945.1 NC_000022.11 98.12 True relocation, inconsistency = -71893 11262924 11270633 14577123 14569414 NC_060945.1 NC_000022.11 98.08 True local misassembly 11248881 11261063 14589986 14577796 NC_060945.1 NC_000022.11 97.73 True relocation, inconsistency = 69013 11178055 11179867 14591796 14589987 NC_060945.1 NC_000022.11 97.75 True local misassembly 11176177 11177716 14593338 14591797 NC_060945.1 NC_000022.11 98.53 True relocation, inconsistency = 42476 11126568 11133700 14600466 14593339 NC_060945.1 NC_000022.11 97.55 True local misassembly 11122262 11126567 14605448 14601145 NC_060945.1 NC_000022.11 98.19 True indel: indel (> 5bp) 11120173 11122090 14607357 14605449 NC_060945.1 NC_000022.11 97.65 True local misassembly 11112402 11119287 14614613 14607733 NC_060945.1 NC_000022.11 98.55 True relocation, inconsistency = -45030 11154630 11156618 14617415 14615427 NC_060945.1 NC_000022.11 98.09 True local misassembly 11153253 11154629 14619471 14618096 NC_060945.1 NC_000022.11 97.39 True local misassembly 11150388 11153252 14622678 14619814 NC_060945.1 NC_000022.11 98.29 True local misassembly 11149739 11150387 14624348 14623698 NC_060945.1 NC_000022.11 98.62 True local misassembly 11147973 11149364 14626620 14625233 NC_060945.1 NC_000022.11 97.92 True local misassembly 11146137 11147972 14628800 14626964 NC_060945.1 NC_000022.11 98.26 True local misassembly 11140845 11146136 14635113 14629821 NC_060945.1 NC_000022.11 97.96 True local misassembly 11138757 11140506 14636863 14635114 NC_060945.1 NC_000022.11 97.94 True indel: indel (> 5bp) 11135020 11138585 14640435 14636864 NC_060945.1 NC_000022.11 97.56 True indel: indel (> 5bp) 11133817 11134849 14641468 14640436 NC_060945.1 NC_000022.11 97.77 True local misassembly 11131975 11133479 14642974 14641469 NC_060945.1 NC_000022.11 98.41 True local misassembly 11126468 11131974 14649333 14643826 NC_060945.1 NC_000022.11 97.66 True local misassembly 11120417 11125788 14654711 14649334 NC_060945.1 NC_000022.11 98.44 True local misassembly 11117404 11119225 14656532 14654712 NC_060945.1 NC_000022.11 97.37 True local misassembly 11108453 11117403 14665993 14657040 NC_060945.1 NC_000022.11 98.39 True local misassembly 11102378 11107773 14671393 14665994 NC_060945.1 NC_000022.11 98.11 True indel: indel (> 5bp) 11089368 11102206 14684239 14671394 NC_060945.1 NC_000022.11 98.44 True local misassembly 11076885 11089367 14697242 14684749 NC_060945.1 NC_000022.11 98.4 True local misassembly 11074347 11076033 14698933 14697243 NC_060945.1 NC_000022.11 98.64 True indel: indel (> 5bp) 11072465 11074175 14700643 14698934 NC_060945.1 NC_000022.11 98.54 True indel: indel (> 5bp) 11068726 11072294 14704214 14700644 NC_060945.1 NC_000022.11 98.66 True indel: indel (> 5bp) 11061327 11068555 14711450 14704215 NC_060945.1 NC_000022.11 98.24 True local misassembly 11058201 11060137 14713393 14711451 NC_060945.1 NC_000022.11 96.45 True indel: indel (> 5bp) 11057392 11058029 14714033 14713394 NC_060945.1 NC_000022.11 97.97 True local misassembly 11047581 11056878 14723330 14714034 NC_060945.1 NC_000022.11 97.58 True local misassembly 11044592 11047580 14727001 14724012 NC_060945.1 NC_000022.11 98.73 True indel: indel (> 5bp) 11042349 11044420 14729072 14727002 NC_060945.1 NC_000022.11 98.07 True local misassembly 11035084 11041669 14735653 14729073 NC_060945.1 NC_000022.11 98.22 True indel: indel (> 5bp) 11032012 11034912 14738554 14735654 NC_060945.1 NC_000022.11 97.86 True relocation, inconsistency = -74613 11096768 11106624 14748403 14738555 NC_060945.1 NC_000022.11 97.88 True relocation, inconsistency = 72579 11021994 11023679 14750600 14748913 NC_060945.1 NC_000022.11 98.16 True indel: indel (> 5bp) 11021145 11021822 14751278 14750601 NC_060945.1 NC_000022.11 96.17 True indel: indel (> 5bp) 11014514 11020970 14757734 14751279 NC_060945.1 NC_000022.11 97.79 True indel: indel (> 5bp) 11010761 11014342 14761320 14757735 NC_060945.1 NC_000022.11 97.96 True indel: indel (> 5bp) 11008904 11010589 14763007 14761321 NC_060945.1 NC_000022.11 96.92 True indel: indel (> 5bp) 11007034 11008732 14764708 14763008 NC_060945.1 NC_000022.11 98.0 True indel: indel (> 5bp) 11001424 11006862 14770142 14764709 NC_060945.1 NC_000022.11 96.97 True indel: indel (> 5bp) 10999554 11001252 14771835 14770143 NC_060945.1 NC_000022.11 97.12 True indel: indel (> 5bp) 10992074 10999382 14779143 14771836 NC_060945.1 NC_000022.11 98.14 True indel: indel (> 5bp) 10984594 10991902 14786453 14779144 NC_060945.1 NC_000022.11 98.32 True indel: indel (> 5bp) 10977794 10984422 14793066 14786454 NC_060945.1 NC_000022.11 97.75 True indel: indel (> 5bp) 10971504 10977622 14799183 14793067 NC_060945.1 NC_000022.11 98.07 True indel: indel (> 5bp) 10968448 10971332 14802072 14799184 NC_060945.1 NC_000022.11 98.17 True indel: indel (> 5bp) 10967768 10968276 14802581 14802073 NC_060945.1 NC_000022.11 98.04 True relocation, inconsistency = -73435 11038055 11041202 14805730 14802582 NC_060945.1 NC_000022.11 98.57 True local misassembly 11035764 11037374 14807340 14805731 NC_060945.1 NC_000022.11 98.01 True indel: indel (> 5bp) 11035086 11035592 14807848 14807341 NC_060945.1 NC_000022.11 99.02 True indel: indel (> 5bp) 11016840 11034913 14825921 14807849 NC_060945.1 NC_000022.11 98.01 True relocation, inconsistency = -83966 11077054 11100351 14849164 14826376 NC_060945.1 NC_000022.11 95.7 True relocation, inconsistency = -28043 11073497 11104940 14880608 14849321 NC_060945.1 NC_000022.11 97.57 True relocation, inconsistency = -57270 11119264 11130601 14892122 14880774 NC_060945.1 NC_000022.11 97.66 True local misassembly 11118012 11119263 14893886 14892632 NC_060945.1 NC_000022.11 98.65 True local misassembly 11093723 11117172 14917843 14894384 NC_060945.1 NC_000022.11 98.24 True indel: indel (> 5bp) 11078074 11093551 14933315 14917844 NC_060945.1 NC_000022.11 98.25 True indel: indel (> 5bp) 11075027 11077903 14936192 14933316 NC_060945.1 NC_000022.11 98.12 True indel: indel (> 5bp) 11073157 11074855 14937894 14936193 NC_060945.1 NC_000022.11 98.35 True indel: indel (> 5bp) 11071963 11072985 14938919 14937895 NC_060945.1 NC_000022.11 98.34 True indel: indel (> 5bp) 11063130 11071792 14947589 14938920 NC_060945.1 NC_000022.11 98.39 True indel: indel (> 5bp) 11056946 11062958 14953604 14947590 NC_060945.1 NC_000022.11 98.15 True local misassembly 11055819 11056432 14954208 14953605 NC_060945.1 NC_000022.11 95.44 True relocation, inconsistency = -230280 11270632 11286098 14969683 14954209 NC_060945.1 NC_000022.11 97.7 True indel: indel (> 5bp) 11254494 11270460 14985662 14969684 NC_060945.1 NC_000022.11 97.93 True indel: indel (> 5bp) 11253814 11254322 14986171 14985663 NC_060945.1 NC_000022.11 98.23 True indel: indel (> 5bp) 11248887 11253642 14990919 14986172 NC_060945.1 NC_000022.11 97.96 True indel: indel (> 5bp) 11247017 11248715 14992616 14990920 NC_060945.1 NC_000022.11 97.29 True indel: indel (> 5bp) 11239531 11246845 14999932 14992617 NC_060945.1 NC_000022.11 98.44 True indel: indel (> 5bp) 11236987 11239360 15002304 14999933 NC_060945.1 NC_000022.11 98.36 True indel: indel (> 5bp) 11235785 11236815 15003334 15002305 NC_060945.1 NC_000022.11 96.61 True indel: indel (> 5bp) 11223897 11235613 15015070 15003335 NC_060945.1 NC_000022.11 98.36 True indel: indel (> 5bp) 11222707 11223725 15016087 15015071 NC_060945.1 NC_000022.11 98.04 True indel: indel (> 5bp) 11222027 11222535 15016596 15016088 NC_060945.1 NC_000022.11 98.62 True relocation, inconsistency = 226213 10983392 10995813 15029012 15016597 NC_060945.1 NC_000022.11 98.41 True local misassembly 10978984 10982552 15033078 15029510 NC_060945.1 NC_000022.11 98.8 True indel: indel (> 5bp) 10977794 10978812 15034097 15033079 NC_060945.1 NC_000022.11 99.02 True indel: indel (> 5bp) 10975244 10977622 15036480 15034098 NC_060945.1 NC_000022.11 98.78 True indel: indel (> 5bp) 10970314 10975072 15041231 15036481 NC_060945.1 NC_000022.11 98.47 True indel: indel (> 5bp) 10967768 10970146 15043603 15041232 NC_060945.1 NC_000022.11 98.36 True indel: indel (> 5bp) 10964696 10967596 15046507 15043604 NC_060945.1 NC_000022.11 97.83 True relocation, inconsistency = -227230 11190115 11191925 15048321 15046508 NC_060945.1 NC_000022.11 98.25 True local misassembly 11186727 11190114 15052051 15048663 NC_060945.1 NC_000022.11 97.52 True local misassembly 11184802 11186726 15054318 15052394 NC_060945.1 NC_000022.11 97.66 True translocation, scaffold gap is present 15729442 16855540 15154319 16279450 NC_060946.1 NC_000022.11 98.6 True relocation, scaffold gap is present, inconsistency = 98247 16981943 16983056 16307606 16308719 NC_060946.1 NC_000022.11 99.55 True indel: indel (> 5bp) 16983184 16984766 16308720 16310302 NC_060946.1 NC_000022.11 99.18 True fake: scaffold gap size wrong estimation (local) 16984831 16985433 16310403 16311005 NC_060946.1 NC_000022.11 99.0 True indel: indel (> 5bp) 16985598 16987092 16311108 16312602 NC_060946.1 NC_000022.11 98.6 True indel: indel (> 5bp) 16987116 16988029 16312603 16313516 NC_060946.1 NC_000022.11 98.91 True fake: scaffold gap size wrong estimation (local) 16988506 18911501 16314011 18239129 NC_060946.1 NC_000022.11 98.78 True fake: scaffold gap size wrong estimation (extensive) 19020758 19066855 18339130 18385598 NC_060946.1 NC_000022.11 98.53 True relocation, inconsistency = 109626 18909929 18910819 18386803 18385911 NC_060946.1 NC_000022.11 98.77 True indel: indel (> 5bp) 18908868 18909900 18387838 18386804 NC_060946.1 NC_000022.11 98.55 True local misassembly 18894828 18908088 18402111 18388852 NC_060946.1 NC_000022.11 99.45 True indel: indel (> 5bp) 18876968 18894827 18420042 18402173 NC_060946.1 NC_000022.11 99.89 True indel: indel (> 5bp) 18876118 18876967 18420926 18420074 NC_060946.1 NC_000022.11 99.65 True indel: indel (> 5bp) 18873926 18875980 18422983 18420927 NC_060946.1 NC_000022.11 99.85 True indel: indel (> 5bp) 18863446 18873925 18433501 18423018 NC_060946.1 NC_000022.11 99.92 True relocation, scaffold gap is present, inconsistency = 190325 19114263 19149459 18483514 18518714 NC_060946.1 NC_000022.11 99.83 True relocation, inconsistency = 2642921 21792503 21890155 18616640 18518837 NC_060946.1 NC_000022.11 98.68 True local misassembly 21748403 21791380 18659531 18616641 NC_060946.1 NC_000022.11 99.08 True relocation, scaffold gap is present, inconsistency = 2604886 18926785 19093483 18872918 18709565 NC_060946.1 NC_000022.11 96.58 True relocation, inconsistency = 154872 19248356 21791517 18872919 21378784 NC_060946.1 NC_000022.11 98.12 True inversion 21856590 21969014 21491776 21379301 NC_060946.1 NC_000022.11 99.65 True relocation, inconsistency = -63747 21905268 39681842 21491777 39211436 NC_060946.1 NC_000022.11 98.81 True local misassembly 39682503 50478601 39211968 49973847 NC_060946.1 NC_000022.11 99.24 True fake: scaffold gap size wrong estimation (local) 50480163 51322084 49975396 50807917 NC_060946.1 NC_000022.11 97.92 True CONTIG NC_000022.11 50818468 misassembled 18940191 19051197 1 110502 NC_060946.1 NT_187386.1 99.04 True relocation, inconsistency = 13333 18887223 18926857 150751 110503 NC_060946.1 NT_187386.1 97.67 True CONTIG NT_187386.1 150754 misassembled 11218264 11260179 41543 1 NC_060946.1 NT_187387.1 98.98 True CONTIG NT_187387.1 41543 correct 2989839 3169285 1 179772 NC_060945.1 NT_187388.1 98.21 True CONTIG NT_187388.1 179772 correct 11538790 11578545 1 39750 NC_060946.1 NT_187390.1 99.75 True indel: indel (> 5bp) 11578546 11579212 39841 40507 NC_060946.1 NT_187390.1 100.0 True local misassembly 11583394 11585172 41008 42811 NC_060946.1 NT_187390.1 97.39 True CONTIG NT_187390.1 42811 correct 8273872 8432385 473 156238 NC_060946.1 NT_187391.1 97.56 True fake: scaffold gap size wrong estimation (local) 8436079 8437980 161985 163892 NC_060946.1 NT_187391.1 95.4 True fake: scaffold gap size wrong estimation (local) 8441153 8443004 166068 167918 NC_060946.1 NT_187391.1 96.58 True fake: scaffold gap size wrong estimation (local) 8444185 8444787 170810 171422 NC_060946.1 NT_187391.1 96.9 True indel: indel (> 5bp) 8444788 8446152 171453 172827 NC_060946.1 NT_187391.1 97.89 True indel: indel (> 5bp) 8446153 8448262 172908 175032 NC_060946.1 NT_187391.1 95.95 True indel: indel (> 5bp) 8448263 8448930 175058 175710 NC_060946.1 NT_187391.1 96.56 True fake: scaffold gap size wrong estimation (local) 8454213 8456872 179261 181920 NC_060946.1 NT_187391.1 99.92 True CONTIG NT_187391.1 181920 correct 16980441 17061614 81189 1 NC_060946.1 NT_187392.1 99.83 True fake: scaffold gap size wrong estimation (local) 16958103 16980342 103838 81601 NC_060946.1 NT_187392.1 99.96 True CONTIG NT_187392.1 103838 correct 16952145 16957402 5256 1 NC_060946.1 NT_187393.1 99.94 True fake: scaffold gap size wrong estimation (local) 16889302 16951227 68006 6181 NC_060946.1 NT_187393.1 99.81 True fake: scaffold gap size wrong estimation (local) 16878130 16888943 79012 68196 NC_060946.1 NT_187393.1 99.96 True fake: scaffold gap size wrong estimation (local) 16865427 16877783 91552 79126 NC_060946.1 NT_187393.1 99.98 True fake: scaffold gap size wrong estimation (local) 16858223 16863900 99375 93801 NC_060946.1 NT_187393.1 98.11 True CONTIG NT_187393.1 99375 correct 16564309 16601210 37184 1 NC_060946.1 NT_187394.1 96.14 True fake: scaffold gap size wrong estimation (local) 16527980 16563618 73985 38403 NC_060946.1 NT_187394.1 99.52 True CONTIG NT_187394.1 73985 correct 1790 37123 10001 44821 NC_060947.1 NC_000023.11 98.45 True translocation, scaffold gap is present 65380 72449 101891 94822 NC_060948.1 NC_000023.11 99.93 True local misassembly 56134 64586 110344 101892 NC_060948.1 NC_000023.11 99.81 True local misassembly 53547 55010 113297 111834 NC_060948.1 NC_000023.11 97.4 True local misassembly 52877 53546 115797 115128 NC_060948.1 NC_000023.11 96.27 True local misassembly 46877 52876 122529 116530 NC_060948.1 NC_000023.11 99.8 True local misassembly 45207 46327 123650 122530 NC_060948.1 NC_000023.11 100.0 True indel: indel (> 5bp) 40226 45145 128570 123651 NC_060948.1 NC_000023.11 98.92 True local misassembly 34295 36248 131329 129376 NC_060948.1 NC_000023.11 99.85 True relocation, scaffold gap is present, inconsistency = -66039 5595 9292 222371 226068 NC_060948.1 NC_000023.11 99.86 True fake: scaffold gap size wrong estimation (local) 10141 14213 226569 230642 NC_060948.1 NC_000023.11 99.78 True local misassembly 14862 21878 231294 238309 NC_060948.1 NC_000023.11 99.76 True local misassembly 26576 29213 238310 240950 NC_060948.1 NC_000023.11 97.92 True local misassembly 30703 31470 241343 242110 NC_060948.1 NC_000023.11 95.7 True local misassembly 33746 34840 242436 243531 NC_060948.1 NC_000023.11 95.62 True indel: indel (> 5bp) 34902 35474 243532 244104 NC_060948.1 NC_000023.11 96.68 True local misassembly 38829 39510 244105 244786 NC_060948.1 NC_000023.11 98.24 True relocation, inconsistency = 27382 68055 68687 245949 246581 NC_060948.1 NC_000023.11 99.21 True local misassembly 69370 70577 247020 248227 NC_060948.1 NC_000023.11 99.25 True indel: indel (> 5bp) 70578 72128 248350 249901 NC_060948.1 NC_000023.11 99.16 True local misassembly 73621 74438 250198 251015 NC_060948.1 NC_000023.11 96.7 True indel: indel (> 5bp) 74543 79097 251016 255568 NC_060948.1 NC_000023.11 99.34 True local misassembly 79409 92197 255569 268358 NC_060948.1 NC_000023.11 99.81 True local misassembly 92858 93628 268359 269129 NC_060948.1 NC_000023.11 97.92 True local misassembly 94839 95375 269130 269666 NC_060948.1 NC_000023.11 97.58 True local misassembly 97081 97697 270162 270778 NC_060948.1 NC_000023.11 97.57 True local misassembly 97918 99026 270779 271887 NC_060948.1 NC_000023.11 99.64 True local misassembly 99615 108205 271888 280496 NC_060948.1 NC_000023.11 99.67 True indel: indel (> 5bp) 108206 111093 280639 283536 NC_060948.1 NC_000023.11 98.24 True local misassembly 111318 115197 283537 287442 NC_060948.1 NC_000023.11 98.9 True indel: indel (> 5bp) 115198 115903 287529 288234 NC_060948.1 NC_000023.11 99.72 True local misassembly 116233 118827 288235 290829 NC_060948.1 NC_000023.11 99.69 True indel: indel (> 5bp) 118828 124755 290954 296882 NC_060948.1 NC_000023.11 99.75 True local misassembly 125279 126112 297848 298687 NC_060948.1 NC_000023.11 97.5 True indel: indel (> 5bp) 126113 139571 298737 312193 NC_060948.1 NC_000023.11 99.85 True indel: indel (> 5bp) 139669 143321 312194 315827 NC_060948.1 NC_000023.11 98.52 True local misassembly 146446 151712 316302 321575 NC_060948.1 NC_000023.11 99.53 True local misassembly 153633 154990 321576 322932 NC_060948.1 NC_000023.11 99.34 True indel: indel (> 5bp) 154991 155707 322966 323689 NC_060948.1 NC_000023.11 98.34 True local misassembly 158859 163210 323924 328276 NC_060948.1 NC_000023.11 99.24 True local misassembly 163349 165483 328764 330874 NC_060948.1 NC_000023.11 96.67 True indel: indel (<= 5bp) 165640 177170 331030 342543 NC_060948.1 NC_000023.11 99.75 True indel: indel (> 5bp) 177171 177720 342571 343120 NC_060948.1 NC_000023.11 99.64 True indel: indel (> 5bp) 177748 178537 343121 343910 NC_060948.1 NC_000023.11 99.75 True indel: indel (> 5bp) 178565 186351 343911 351697 NC_060948.1 NC_000023.11 99.95 True indel: indel (> 5bp) 186514 187328 351698 352512 NC_060948.1 NC_000023.11 99.75 True indel: indel (> 5bp) 187356 191681 352513 356822 NC_060948.1 NC_000023.11 98.45 True indel: indel (> 5bp) 191919 193378 356923 358386 NC_060948.1 NC_000023.11 98.77 True indel: indel (> 5bp) 193379 198622 358446 363690 NC_060948.1 NC_000023.11 99.2 True local misassembly 202480 203962 363691 365172 NC_060948.1 NC_000023.11 99.06 True indel: indel (> 5bp) 203963 204555 365338 365930 NC_060948.1 NC_000023.11 98.99 True local misassembly 204556 206498 366756 368696 NC_060948.1 NC_000023.11 99.85 True indel: indel (> 5bp) 206536 214438 368697 376599 NC_060948.1 NC_000023.11 99.94 True indel: indel (> 5bp) 214492 245915 376600 408027 NC_060948.1 NC_000023.11 99.78 True indel: indel (> 5bp) 245916 253410 408054 415552 NC_060948.1 NC_000023.11 99.63 True local misassembly 253909 254746 415717 416554 NC_060948.1 NC_000023.11 99.76 True indel: indel (> 5bp) 254747 258253 416720 420226 NC_060948.1 NC_000023.11 99.8 True indel: indel (> 5bp) 258254 263449 420261 425443 NC_060948.1 NC_000023.11 99.44 True local misassembly 264035 265262 425444 426670 NC_060948.1 NC_000023.11 98.45 True local misassembly 265759 266327 426671 427239 NC_060948.1 NC_000023.11 99.65 True local misassembly 266652 268322 427342 429032 NC_060948.1 NC_000023.11 96.92 True indel: indel (> 5bp) 268323 271444 429106 432223 NC_060948.1 NC_000023.11 99.52 True local misassembly 275121 279001 432800 436658 NC_060948.1 NC_000023.11 98.76 True local misassembly 279002 292380 437038 450430 NC_060948.1 NC_000023.11 99.45 True local misassembly 292846 299100 450431 456706 NC_060948.1 NC_000023.11 98.73 True indel: indel (> 5bp) 299124 299696 456707 457278 NC_060948.1 NC_000023.11 97.73 True local misassembly 300232 304911 457279 461948 NC_060948.1 NC_000023.11 99.06 True local misassembly 305293 306953 461949 463613 NC_060948.1 NC_000023.11 99.22 True indel: indel (> 5bp) 306954 315905 463779 472752 NC_060948.1 NC_000023.11 99.67 True local misassembly 317343 326022 472753 481430 NC_060948.1 NC_000023.11 99.86 True local misassembly 331319 334255 481991 484915 NC_060948.1 NC_000023.11 99.01 True local misassembly 334256 347188 485313 498252 NC_060948.1 NC_000023.11 99.61 True indel: indel (> 5bp) 347285 347835 498253 498803 NC_060948.1 NC_000023.11 100.0 True local misassembly 348519 354248 499181 504913 NC_060948.1 NC_000023.11 99.49 True local misassembly 354809 362733 505653 513575 NC_060948.1 NC_000023.11 99.55 True local misassembly 363262 363812 515160 515710 NC_060948.1 NC_000023.11 99.09 True local misassembly 363813 373999 515931 526115 NC_060948.1 NC_000023.11 99.77 True indel: indel (> 5bp) 374062 375589 526116 527641 NC_060948.1 NC_000023.11 99.35 True local misassembly 380653 385152 528172 532664 NC_060948.1 NC_000023.11 99.13 True local misassembly 385477 387009 532665 534198 NC_060948.1 NC_000023.11 99.8 True indel: indel (> 5bp) 387034 388779 534199 535958 NC_060948.1 NC_000023.11 98.86 True indel: indel (> 5bp) 388780 395071 535998 542295 NC_060948.1 NC_000023.11 99.63 True indel: indel (> 5bp) 395072 407635 542419 554974 NC_060948.1 NC_000023.11 99.69 True local misassembly 409095 410422 555847 557171 NC_060948.1 NC_000023.11 99.55 True local misassembly 411022 419226 557172 565391 NC_060948.1 NC_000023.11 99.14 True indel: indel (> 5bp) 419370 424230 565392 570252 NC_060948.1 NC_000023.11 99.88 True indel: indel (> 5bp) 424293 438271 570253 584251 NC_060948.1 NC_000023.11 99.34 True indel: indel (> 5bp) 438357 455774 584252 601651 NC_060948.1 NC_000023.11 99.83 True local misassembly 455993 462122 602221 608322 NC_060948.1 NC_000023.11 99.17 True indel: indel (> 5bp) 462123 467258 608348 613508 NC_060948.1 NC_000023.11 99.17 True indel: indel (> 5bp) 467283 475571 613509 621806 NC_060948.1 NC_000023.11 99.45 True indel: indel (> 5bp) 475572 476796 621836 623054 NC_060948.1 NC_000023.11 99.1 True indel: indel (> 5bp) 476969 480072 623312 626379 NC_060948.1 NC_000023.11 97.91 True local misassembly 480073 482148 626586 628663 NC_060948.1 NC_000023.11 99.71 True local misassembly 482497 489859 629194 636548 NC_060948.1 NC_000023.11 99.61 True indel: indel (> 5bp) 489860 497101 636727 643969 NC_060948.1 NC_000023.11 99.81 True indel: indel (> 5bp) 497102 500671 644025 647604 NC_060948.1 NC_000023.11 99.47 True indel: indel (> 5bp) 500672 501940 647687 648942 NC_060948.1 NC_000023.11 98.19 True indel: indel (<= 5bp) 502043 509839 649044 656843 NC_060948.1 NC_000023.11 99.46 True indel: indel (> 5bp) 509918 519569 656844 666501 NC_060948.1 NC_000023.11 99.72 True indel: indel (> 5bp) 519570 531132 666591 678143 NC_060948.1 NC_000023.11 99.62 True local misassembly 531133 542517 678538 689888 NC_060948.1 NC_000023.11 99.23 True indel: indel (> 5bp) 542518 544723 689946 692152 NC_060948.1 NC_000023.11 99.41 True local misassembly 544724 574260 692474 722005 NC_060948.1 NC_000023.11 99.71 True indel: indel (> 5bp) 574261 575047 722045 722831 NC_060948.1 NC_000023.11 99.87 True indel: indel (> 5bp) 575048 577353 722888 725192 NC_060948.1 NC_000023.11 99.48 True local misassembly 580608 626269 725193 770844 NC_060948.1 NC_000023.11 99.81 True indel: indel (> 5bp) 626270 634288 771007 779045 NC_060948.1 NC_000023.11 99.56 True local misassembly 634555 635415 779046 779899 NC_060948.1 NC_000023.11 98.14 True indel: indel (> 5bp) 635637 636731 780003 781078 NC_060948.1 NC_000023.11 96.62 True indel: indel (> 5bp) 636758 645284 781079 789610 NC_060948.1 NC_000023.11 99.44 True indel: indel (> 5bp) 645420 674097 789611 818279 NC_060948.1 NC_000023.11 99.81 True indel: indel (> 5bp) 674098 695061 818315 839283 NC_060948.1 NC_000023.11 99.94 True local misassembly 695062 700310 839964 845215 NC_060948.1 NC_000023.11 99.85 True indel: indel (> 5bp) 700311 712945 845244 857872 NC_060948.1 NC_000023.11 99.49 True translocation 699552 700947 864839 866234 NC_060947.1 NC_000023.11 99.64 True local misassembly 701205 716157 866235 881181 NC_060947.1 NC_000023.11 99.51 True indel: indel (> 5bp) 716292 718135 881182 883023 NC_060947.1 NC_000023.11 99.3 True indel: indel (> 5bp) 718136 719911 883046 884821 NC_060947.1 NC_000023.11 99.61 True local misassembly 720527 746057 884822 910342 NC_060947.1 NC_000023.11 99.86 True indel: indel (> 5bp) 746103 753403 910343 917649 NC_060947.1 NC_000023.11 99.55 True local misassembly 755080 757338 919970 922212 NC_060947.1 NC_000023.11 98.54 True indel: indel (> 5bp) 757339 773806 922235 938733 NC_060947.1 NC_000023.11 99.13 True indel: indel (> 5bp) 773807 777301 938858 942346 NC_060947.1 NC_000023.11 99.48 True local misassembly 777302 779393 943201 945290 NC_060947.1 NC_000023.11 96.7 True indel: indel (> 5bp) 779394 781067 945440 947128 NC_060947.1 NC_000023.11 97.93 True local misassembly 781444 782980 947859 949397 NC_060947.1 NC_000023.11 99.35 True local misassembly 782981 796276 950113 963401 NC_060947.1 NC_000023.11 99.54 True indel: indel (> 5bp) 796459 803899 963686 971132 NC_060947.1 NC_000023.11 99.23 True indel: indel (> 5bp) 803900 813772 971325 981193 NC_060947.1 NC_000023.11 99.68 True indel: indel (> 5bp) 813874 823326 981194 990641 NC_060947.1 NC_000023.11 99.2 True local misassembly 824709 846343 990917 1012548 NC_060947.1 NC_000023.11 99.5 True indel: indel (> 5bp) 846500 864995 1012549 1031023 NC_060947.1 NC_000023.11 99.32 True indel: indel (> 5bp) 864996 882521 1031045 1048545 NC_060947.1 NC_000023.11 99.33 True indel: indel (> 5bp) 882703 883954 1048770 1050021 NC_060947.1 NC_000023.11 99.28 True local misassembly 890004 897532 1050022 1057562 NC_060947.1 NC_000023.11 99.58 True indel: indel (> 5bp) 897614 907804 1057563 1067757 NC_060947.1 NC_000023.11 99.45 True local misassembly 908064 914217 1067758 1073917 NC_060947.1 NC_000023.11 99.53 True local misassembly 914498 921839 1073918 1081246 NC_060947.1 NC_000023.11 99.5 True indel: indel (> 5bp) 921975 924363 1081247 1083628 NC_060947.1 NC_000023.11 99.46 True local misassembly 924364 925626 1084700 1085963 NC_060947.1 NC_000023.11 99.05 True local misassembly 926512 946709 1085964 1106165 NC_060947.1 NC_000023.11 99.8 True local misassembly 947141 951484 1106166 1110509 NC_060947.1 NC_000023.11 99.77 True indel: indel (> 5bp) 951657 968536 1110510 1127413 NC_060947.1 NC_000023.11 99.67 True local misassembly 969528 970250 1127940 1128662 NC_060947.1 NC_000023.11 96.27 True indel: indel (> 5bp) 970395 980250 1128663 1138517 NC_060947.1 NC_000023.11 99.84 True local misassembly 980569 984279 1138518 1142231 NC_060947.1 NC_000023.11 99.52 True local misassembly 984280 985021 1142575 1143318 NC_060947.1 NC_000023.11 98.25 True indel: indel (> 5bp) 985022 996047 1143423 1154434 NC_060947.1 NC_000023.11 99.25 True local misassembly 996777 1004189 1154435 1161827 NC_060947.1 NC_000023.11 99.11 True indel: indel (> 5bp) 1004250 1007658 1161828 1165236 NC_060947.1 NC_000023.11 99.62 True indel: indel (> 5bp) 1007729 1009464 1165237 1166962 NC_060947.1 NC_000023.11 98.27 True indel: indel (> 5bp) 1009519 1010723 1166963 1168175 NC_060947.1 NC_000023.11 99.01 True indel: indel (> 5bp) 1010753 1011578 1168176 1168999 NC_060947.1 NC_000023.11 98.55 True local misassembly 1013594 1014122 1169000 1169528 NC_060947.1 NC_000023.11 100.0 True indel: indel (> 5bp) 1014123 1018245 1169599 1173729 NC_060947.1 NC_000023.11 99.35 True local misassembly 1018454 1019080 1173730 1174356 NC_060947.1 NC_000023.11 99.04 True local misassembly 1019497 1021081 1174357 1175951 NC_060947.1 NC_000023.11 98.37 True local misassembly 1021871 1023719 1176341 1178189 NC_060947.1 NC_000023.11 99.57 True indel: indel (> 5bp) 1023960 1024716 1178495 1179250 NC_060947.1 NC_000023.11 99.74 True indel: indel (> 5bp) 1024803 1029009 1179251 1183495 NC_060947.1 NC_000023.11 98.68 True local misassembly 1029010 1034367 1183837 1189196 NC_060947.1 NC_000023.11 99.66 True indel: indel (> 5bp) 1034396 1036556 1189197 1191361 NC_060947.1 NC_000023.11 99.45 True indel: indel (> 5bp) 1036588 1043442 1191362 1198215 NC_060947.1 NC_000023.11 99.4 True local misassembly 1044193 1086706 1198378 1240862 NC_060947.1 NC_000023.11 99.84 True indel: indel (> 5bp) 1086920 1093905 1241115 1248088 NC_060947.1 NC_000023.11 99.24 True indel: indel (> 5bp) 1093936 1097252 1248089 1251401 NC_060947.1 NC_000023.11 98.94 True indel: indel (> 5bp) 1097253 1099199 1251430 1253376 NC_060947.1 NC_000023.11 99.69 True local misassembly 1099640 1108992 1253377 1262729 NC_060947.1 NC_000023.11 99.8 True local misassembly 1109591 1110834 1262730 1263971 NC_060947.1 NC_000023.11 99.12 True local misassembly 1111633 1118515 1264314 1271213 NC_060947.1 NC_000023.11 99.29 True indel: indel (> 5bp) 1118516 1121689 1271397 1274576 NC_060947.1 NC_000023.11 98.99 True local misassembly 1123710 1130113 1274577 1280976 NC_060947.1 NC_000023.11 99.81 True indel: indel (> 5bp) 1130159 1141080 1280977 1291919 NC_060947.1 NC_000023.11 99.56 True indel: indel (> 5bp) 1141081 1143111 1291964 1293990 NC_060947.1 NC_000023.11 99.36 True indel: indel (> 5bp) 1143199 1144284 1293991 1295074 NC_060947.1 NC_000023.11 99.17 True local misassembly 1144717 1146103 1295075 1296461 NC_060947.1 NC_000023.11 99.64 True local misassembly 1146104 1146789 1296690 1297375 NC_060947.1 NC_000023.11 97.52 True local misassembly 1147006 1147758 1297820 1298572 NC_060947.1 NC_000023.11 97.61 True indel: indel (> 5bp) 1147759 1153251 1298687 1304190 NC_060947.1 NC_000023.11 99.55 True local misassembly 1153586 1157004 1304191 1307601 NC_060947.1 NC_000023.11 98.95 True local misassembly 1157321 1163923 1307602 1314212 NC_060947.1 NC_000023.11 99.49 True indel: indel (> 5bp) 1163924 1175017 1314308 1325433 NC_060947.1 NC_000023.11 99.4 True local misassembly 1175757 1216271 1325434 1365963 NC_060947.1 NC_000023.11 99.73 True indel: indel (> 5bp) 1216308 1216893 1365964 1366566 NC_060947.1 NC_000023.11 95.19 True local misassembly 1217513 1218939 1367339 1368765 NC_060947.1 NC_000023.11 99.79 True local misassembly 1218940 1219601 1369233 1369894 NC_060947.1 NC_000023.11 98.79 True local misassembly 1219602 1220111 1375720 1376224 NC_060947.1 NC_000023.11 97.45 True local misassembly 1220112 1246313 1376460 1402667 NC_060947.1 NC_000023.11 99.84 True indel: indel (> 5bp) 1246406 1251797 1402838 1408229 NC_060947.1 NC_000023.11 99.87 True local misassembly 1251798 1253192 1410225 1411624 NC_060947.1 NC_000023.11 98.36 True indel: indel (> 5bp) 1253220 1256805 1411625 1415214 NC_060947.1 NC_000023.11 99.08 True indel: indel (> 5bp) 1256831 1266564 1415215 1424981 NC_060947.1 NC_000023.11 98.51 True indel: indel (> 5bp) 1266565 1274418 1425029 1432859 NC_060947.1 NC_000023.11 99.07 True local misassembly 1274957 1285352 1432860 1443253 NC_060947.1 NC_000023.11 99.87 True indel: indel (> 5bp) 1285353 1293119 1443390 1451175 NC_060947.1 NC_000023.11 99.58 True indel: indel (> 5bp) 1293120 1303862 1451212 1461976 NC_060947.1 NC_000023.11 99.4 True indel: indel (> 5bp) 1303891 1307341 1461977 1465425 NC_060947.1 NC_000023.11 99.25 True relocation, inconsistency = -40732 1307420 1315589 1506236 1514374 NC_060947.1 NC_000023.11 98.96 True indel: indel (> 5bp) 1315736 1333833 1514375 1532442 NC_060947.1 NC_000023.11 99.27 True indel: indel (> 5bp) 1333834 1334896 1532477 1533542 NC_060947.1 NC_000023.11 99.16 True indel: indel (> 5bp) 1334897 1359996 1533575 1558654 NC_060947.1 NC_000023.11 99.42 True indel: indel (> 5bp) 1360021 1367285 1558655 1565923 NC_060947.1 NC_000023.11 99.42 True indel: indel (> 5bp) 1367333 1389134 1565924 1587718 NC_060947.1 NC_000023.11 99.21 True local misassembly 1389913 1390597 1588440 1589139 NC_060947.1 NC_000023.11 96.71 True indel: indel (> 5bp) 1390598 1396648 1589180 1595230 NC_060947.1 NC_000023.11 99.87 True indel: indel (> 5bp) 1396649 1410222 1595259 1608859 NC_060947.1 NC_000023.11 99.28 True indel: indel (> 5bp) 1410223 1411093 1608894 1609763 NC_060947.1 NC_000023.11 98.51 True indel: indel (> 5bp) 1411094 1438186 1609798 1636890 NC_060947.1 NC_000023.11 99.73 True local misassembly 1439472 1440160 1640231 1640921 NC_060947.1 NC_000023.11 97.68 True local misassembly 1440161 1467670 1641335 1668847 NC_060947.1 NC_000023.11 99.81 True local misassembly 1467671 1480401 1669144 1681868 NC_060947.1 NC_000023.11 99.45 True local misassembly 1480938 1495733 1681967 1696728 NC_060947.1 NC_000023.11 99.33 True local misassembly 1495734 1499159 1698241 1701666 NC_060947.1 NC_000023.11 99.88 True local misassembly 1499160 1506593 1702440 1709871 NC_060947.1 NC_000023.11 99.6 True indel: indel (> 5bp) 1506616 1509014 1709872 1712274 NC_060947.1 NC_000023.11 99.5 True indel: indel (> 5bp) 1509040 1532018 1712275 1735255 NC_060947.1 NC_000023.11 99.57 True local misassembly 1532764 1556911 1735915 1760063 NC_060947.1 NC_000023.11 99.68 True indel: indel (> 5bp) 1556952 1560462 1760064 1763572 NC_060947.1 NC_000023.11 99.17 True local misassembly 1560702 1569066 1764802 1773162 NC_060947.1 NC_000023.11 99.58 True local misassembly 1569067 1604609 1773384 1808939 NC_060947.1 NC_000023.11 99.58 True indel: indel (> 5bp) 1604638 1651440 1808940 1855757 NC_060947.1 NC_000023.11 99.94 True indel: indel (> 5bp) 1651958 1683556 1856121 1887732 NC_060947.1 NC_000023.11 99.88 True local misassembly 1683557 1700140 1888069 1904627 NC_060947.1 NC_000023.11 99.73 True local misassembly 1700436 1706443 1904628 1910635 NC_060947.1 NC_000023.11 99.58 True local misassembly 1706718 1711898 1911196 1916369 NC_060947.1 NC_000023.11 99.71 True local misassembly 1712206 1744625 1916916 1949345 NC_060947.1 NC_000023.11 99.8 True relocation, scaffold gap is present, inconsistency = -185537 1742754 19060370 2133011 19477857 NC_060947.1 NC_000023.11 98.98 True indel: indel (> 5bp) 19060619 25527288 19478014 25939862 NC_060947.1 NC_000023.11 99.81 True indel: indel (> 5bp) 25527541 32607885 25940219 33009845 NC_060947.1 NC_000023.11 99.68 True local misassembly 32608521 36680789 33010103 37085008 NC_060947.1 NC_000023.11 99.73 True translocation 30673540 30687801 37085009 37099262 NC_060932.1 NC_000023.11 99.93 True translocation, scaffold gap is present 36688631 45336158 37285838 45926665 NC_060947.1 NC_000023.11 99.74 True local misassembly 45337251 47805277 45929855 48396305 NC_060947.1 NC_000023.11 99.64 True local misassembly 47808092 48759461 48399120 49347666 NC_060947.1 NC_000023.11 99.54 True relocation, inconsistency = 84190 48843799 48844379 49347814 49348394 NC_060947.1 NC_000023.11 99.83 True relocation, scaffold gap is present, inconsistency = -180005 48844375 49546538 49528395 50228842 NC_060947.1 NC_000023.11 99.55 True relocation, scaffold gap is present, inconsistency = -46273 49550410 50964510 50278987 51692963 NC_060947.1 NC_000023.11 99.87 True relocation, inconsistency = -24970 50964511 50971910 51700363 51692964 NC_060947.1 NC_000023.11 99.52 True inversion 50971911 51773990 51700364 52502217 NC_060947.1 NC_000023.11 99.8 True local misassembly 51782437 54207995 52510672 54914562 NC_060947.1 NC_000023.11 98.95 True local misassembly 54207943 54773126 54914902 55479964 NC_060947.1 NC_000023.11 99.94 True relocation, inconsistency = -26421 54775349 54786402 55491018 55479965 NC_060947.1 NC_000023.11 99.97 True inversion 54786081 57839642 55491019 58555579 NC_060947.1 NC_000023.11 98.87 True relocation, scaffold gap is present, inconsistency = 1983376 59873019 59886738 58619303 58605580 NC_060947.1 NC_000023.11 98.86 True indel: indel (> 5bp) 59857203 59872850 58634954 58619304 NC_060947.1 NC_000023.11 99.03 True local misassembly 59846518 59855147 58643589 58634955 NC_060947.1 NC_000023.11 98.95 True local misassembly 59833946 59846517 58658227 58645647 NC_060947.1 NC_000023.11 98.67 True local misassembly 59815466 59833945 58678607 58660114 NC_060947.1 NC_000023.11 98.8 True relocation, inconsistency = -41128 59801053 59856593 58735886 58678608 NC_060947.1 NC_000023.11 95.79 True relocation, scaffold gap is present, inconsistency = -107160 59899624 59907812 58744478 58736287 NC_060947.1 NC_000023.11 99.15 True local misassembly 59872000 59899623 58773823 58746195 NC_060947.1 NC_000023.11 98.84 True local misassembly 59839271 59869942 58804503 58773824 NC_060947.1 NC_000023.11 99.04 True relocation, scaffold gap is present, inconsistency = 233003 59595163 59605657 58815615 58805114 NC_060947.1 NC_000023.11 99.17 True local misassembly 59558957 59595162 58853883 58817673 NC_060947.1 NC_000023.11 98.79 True local misassembly 59553681 59556899 58857109 58853884 NC_060947.1 NC_000023.11 98.79 True relocation, inconsistency = -463753 59968864 60017433 58905348 58857110 NC_060947.1 NC_000023.11 98.17 True relocation, inconsistency = 1905744 58053049 58063119 58915252 58905349 NC_060947.1 NC_000023.11 97.31 True relocation, inconsistency = -1856911 59890870 59909959 58934351 58915253 NC_060947.1 NC_000023.11 98.97 True relocation, inconsistency = 212872 59645536 59677997 58966476 58934352 NC_060947.1 NC_000023.11 97.63 True relocation, inconsistency = -686894 60319455 60332429 58979620 58966477 NC_060947.1 NC_000023.11 95.17 True relocation, inconsistency = 1086402 59224120 59232791 58988555 58979882 NC_060947.1 NC_000023.11 98.65 True relocation, scaffold gap is present, inconsistency = -308434 59522522 59531619 58998591 58989490 NC_060947.1 NC_000023.11 98.68 True relocation, inconsistency = -65821 59492725 59580414 59096139 59006520 NC_060947.1 NC_000023.11 96.01 True relocation, inconsistency = 1154904 58312444 58337820 59121346 59096140 NC_060947.1 NC_000023.11 97.74 True relocation, inconsistency = -1247440 59517443 59559883 59163457 59121347 NC_060947.1 NC_000023.11 98.27 True relocation, inconsistency = 1545318 57917856 57972124 59219781 59163458 NC_060947.1 NC_000023.11 95.86 True relocation, inconsistency = -466522 58291179 58384377 59312993 59219782 NC_060947.1 NC_000023.11 98.09 True relocation, inconsistency = -1340001 59620364 59631179 59323802 59312994 NC_060947.1 NC_000023.11 98.75 True local misassembly 59608728 59620363 59337497 59325860 NC_060947.1 NC_000023.11 98.48 True indel: indel (> 5bp) 59599652 59608559 59346408 59337498 NC_060947.1 NC_000023.11 99.18 True indel: indel (> 5bp) 59597632 59599483 59348260 59346409 NC_060947.1 NC_000023.11 98.0 True local misassembly 59576773 59597631 59371017 59350148 NC_060947.1 NC_000023.11 98.49 True local misassembly 59556480 59574715 59389254 59371018 NC_060947.1 NC_000023.11 98.78 True local misassembly 59523719 59552372 59417905 59389255 NC_060947.1 NC_000023.11 99.04 True relocation, inconsistency = -24684 59531919 59548402 59434395 59417906 NC_060947.1 NC_000023.11 98.9 True local misassembly 59496472 59529861 59467791 59434396 NC_060947.1 NC_000023.11 98.8 True local misassembly 59484491 59494414 59477726 59467792 NC_060947.1 NC_000023.11 98.95 True fake: scaffold gap size wrong estimation (local) 59475052 59477112 59489776 59487716 NC_060947.1 NC_000023.11 98.2 True indel: indel (> 5bp) 59470311 59474883 59494353 59489777 NC_060947.1 NC_000023.11 98.8 True local misassembly 59435573 59470310 59531150 59496411 NC_060947.1 NC_000023.11 98.77 True fake: scaffold gap size wrong estimation (local) 59427644 59431520 59537019 59533144 NC_060947.1 NC_000023.11 99.07 True local misassembly 59415079 59425590 59547542 59537020 NC_060947.1 NC_000023.11 98.82 True local misassembly 59365835 59413026 59594728 59547543 NC_060947.1 NC_000023.11 98.78 True fake: not a misassembly (possible transposable element) 60917669 60924519 59601575 59594729 NC_060947.1 NC_000023.11 98.43 True fake: not a misassembly (possible transposable element) 59359785 59360687 59602478 59601576 NC_060947.1 NC_000023.11 98.25 True local misassembly 59343220 59357727 59616987 59602479 NC_060947.1 NC_000023.11 98.88 True local misassembly 59282946 59342878 59676936 59616988 NC_060947.1 NC_000023.11 98.88 True relocation, inconsistency = -113131 59374075 59396076 59698937 59676937 NC_060947.1 NC_000023.11 98.83 True relocation, inconsistency = -457098 59804699 59831029 59725427 59699081 NC_060947.1 NC_000023.11 98.88 True relocation, inconsistency = 453506 59314798 59349960 59761829 59726660 NC_060947.1 NC_000023.11 98.91 True indel: indel (> 5bp) 59306197 59314626 59770256 59761830 NC_060947.1 NC_000023.11 99.16 True relocation, inconsistency = -456250 59740691 59762446 59792015 59770257 NC_060947.1 NC_000023.11 98.81 True indel: indel (> 5bp) 59714925 59740521 59817608 59792016 NC_060947.1 NC_000023.11 98.79 True relocation, inconsistency = 440997 59222204 59273927 59869344 59817609 NC_060947.1 NC_000023.11 98.13 True relocation, inconsistency = -377915 59478744 59600118 59991971 59869345 NC_060947.1 NC_000023.11 96.52 True relocation, inconsistency = -55524 59526257 59534267 59999985 59991972 NC_060947.1 NC_000023.11 98.9 True local misassembly 59522907 59526256 60005052 60001703 NC_060947.1 NC_000023.11 98.63 True local misassembly 59508563 59522906 60021455 60007110 NC_060947.1 NC_000023.11 98.86 True indel: indel (> 5bp) 59507746 59508538 60022248 60021456 NC_060947.1 NC_000023.11 98.61 True local misassembly 59497862 59507404 60031794 60022249 NC_060947.1 NC_000023.11 98.76 True local misassembly 59493375 59497861 60038341 60033855 NC_060947.1 NC_000023.11 98.73 True local misassembly 59477987 59491316 60051683 60038342 NC_060947.1 NC_000023.11 98.74 True local misassembly 59447292 59469966 60082382 60059704 NC_060947.1 NC_000023.11 98.82 True indel: indel (> 5bp) 59445424 59447124 60084083 60082383 NC_060947.1 NC_000023.11 98.65 True local misassembly 59436140 59443366 60091305 60084084 NC_060947.1 NC_000023.11 98.74 True indel: indel (> 5bp) 59431650 59435968 60095624 60091306 NC_060947.1 NC_000023.11 99.14 True local misassembly 59420889 59431308 60106053 60095625 NC_060947.1 NC_000023.11 98.89 True indel: indel (> 5bp) 59396393 59420717 60130387 60106054 NC_060947.1 NC_000023.11 98.94 True indel: indel (> 5bp) 59373301 59396221 60153309 60130388 NC_060947.1 NC_000023.11 98.66 True local misassembly 59361244 59373300 60167423 60155367 NC_060947.1 NC_000023.11 98.72 True local misassembly 59337126 59361243 60193601 60169479 NC_060947.1 NC_000023.11 99.09 True local misassembly 59321619 59335068 60207055 60193602 NC_060947.1 NC_000023.11 99.11 True relocation, inconsistency = -59638 59367002 59369460 60221310 60218852 NC_060947.1 NC_000023.11 98.45 True local misassembly 59332374 59364944 60253879 60221311 NC_060947.1 NC_000023.11 98.74 True local misassembly 59311022 59331167 60274026 60253880 NC_060947.1 NC_000023.11 98.89 True indel: indel (> 5bp) 59295913 59310850 60288968 60274027 NC_060947.1 NC_000023.11 98.78 True relocation, inconsistency = -609463 59879884 59905375 60314471 60288969 NC_060947.1 NC_000023.11 98.8 True relocation, inconsistency = 254191 59616613 59625692 60323551 60314472 NC_060947.1 NC_000023.11 98.79 True indel: indel (> 5bp) 59608967 59616441 60331023 60323552 NC_060947.1 NC_000023.11 98.65 True indel: indel (> 5bp) 59591801 59608795 60348026 60331024 NC_060947.1 NC_000023.11 98.88 True local misassembly 59554373 59589738 60383390 60348027 NC_060947.1 NC_000023.11 98.7 True local misassembly 59544196 59552322 60391520 60383391 NC_060947.1 NC_000023.11 98.38 True local misassembly 59531217 59544195 60405350 60392372 NC_060947.1 NC_000023.11 98.78 True local misassembly 59525163 59531216 60413460 60407408 NC_060947.1 NC_000023.11 98.45 True local misassembly 59508427 59515478 60432251 60425203 NC_060947.1 NC_000023.11 98.7 True relocation, inconsistency = -418532 59805164 59926958 60549808 60432252 NC_060947.1 NC_000023.11 95.36 True relocation, scaffold gap is present, inconsistency = -131835 59889693 59936598 60597133 60550209 NC_060947.1 NC_000023.11 98.71 True relocation, inconsistency = -1015051 60887902 60904743 60613972 60597134 NC_060947.1 NC_000023.11 98.07 True relocation, inconsistency = 1489097 59367112 59398804 60645660 60613973 NC_060947.1 NC_000023.11 98.79 True relocation, inconsistency = -482289 59776590 59849400 60717631 60645661 NC_060947.1 NC_000023.11 97.39 True relocation, inconsistency = 184088 59568545 59592501 60741584 60717632 NC_060947.1 NC_000023.11 98.76 True local misassembly 59561196 59566487 60746877 60741585 NC_060947.1 NC_000023.11 98.53 True relocation, inconsistency = -332159 59853681 59893354 60786569 60746878 NC_060947.1 NC_000023.11 98.7 True relocation, inconsistency = 330106 59522625 59523574 60787502 60786570 NC_060947.1 NC_000023.11 98.49 True local misassembly 59515632 59521772 60793645 60787503 NC_060947.1 NC_000023.11 98.94 True relocation, inconsistency = -330108 59812414 59845739 60826990 60793646 NC_060947.1 NC_000023.11 98.82 True local misassembly 59780486 59810358 60856882 60826991 NC_060947.1 NC_000023.11 98.61 True local misassembly 59774405 59778427 60860905 60856883 NC_060947.1 NC_000023.11 98.96 True local misassembly 59756126 59773369 60878152 60860906 NC_060947.1 NC_000023.11 98.74 True relocation, inconsistency = 662448 59036385 59093677 60935295 60878153 NC_060947.1 NC_000023.11 98.36 True relocation, inconsistency = -321045 59313668 59357429 60979911 60935296 NC_060947.1 NC_000023.11 97.25 True relocation, inconsistency = -480254 59704355 59787201 61068284 60986632 NC_060947.1 NC_000023.11 97.18 True relocation, inconsistency = -182019 59864398 59886373 61090267 61068285 NC_060947.1 NC_000023.11 98.61 True local misassembly 59857203 59862341 61095407 61090268 NC_060947.1 NC_000023.11 99.18 True local misassembly 59823861 59855147 61126706 61095408 NC_060947.1 NC_000023.11 98.77 True relocation, inconsistency = 1883661 57894587 57940199 61173171 61126707 NC_060947.1 NC_000023.11 96.38 True fake: scaffold gap size wrong estimation (local) 57890577 57894416 61177178 61173340 NC_060947.1 NC_000023.11 98.2 True local misassembly 57881660 57890576 61186948 61178030 NC_060947.1 NC_000023.11 98.33 True local misassembly 57861063 57879602 61205492 61186949 NC_060947.1 NC_000023.11 98.15 True local misassembly 57853284 57859857 61212069 61205493 NC_060947.1 NC_000023.11 98.07 True relocation, scaffold gap is present, inconsistency = -2979250 60795205 60832186 61249231 61212417 NC_060947.1 NC_000023.11 98.48 True relocation, inconsistency = 1263034 59517261 59532170 61264139 61249232 NC_060947.1 NC_000023.11 98.86 True local misassembly 59483112 59515203 61296253 61264140 NC_060947.1 NC_000023.11 98.64 True indel: indel (> 5bp) 59469750 59482941 61309441 61296254 NC_060947.1 NC_000023.11 98.57 True local misassembly 59450450 59469749 61330807 61311500 NC_060947.1 NC_000023.11 98.91 True local misassembly 59425483 59450449 61357668 61332696 NC_060947.1 NC_000023.11 98.57 True relocation, inconsistency = -236170 59651076 59661652 61368255 61357669 NC_060947.1 NC_000023.11 98.7 True relocation, inconsistency = 234623 59375595 59416452 61409129 61368256 NC_060947.1 NC_000023.11 98.64 True relocation, inconsistency = -238562 59605982 59614156 61417305 61409130 NC_060947.1 NC_000023.11 98.61 True indel: indel (> 5bp) 59574275 59605810 61448853 61417306 NC_060947.1 NC_000023.11 98.82 True local misassembly 59563071 59573934 61459721 61448854 NC_060947.1 NC_000023.11 98.75 True local misassembly 59526132 59561013 61494621 61459722 NC_060947.1 NC_000023.11 98.73 True relocation, inconsistency = -90494 59613454 59616625 61497793 61494622 NC_060947.1 NC_000023.11 98.68 True relocation, inconsistency = 90494 59508989 59522959 61511768 61497794 NC_060947.1 NC_000023.11 98.73 True indel: indel (> 5bp) 59503641 59508821 61516954 61511769 NC_060947.1 NC_000023.11 98.61 True relocation, inconsistency = -92209 59585420 59595849 61527387 61516955 NC_060947.1 NC_000023.11 98.71 True indel: indel (> 5bp) 59584662 59585248 61527974 61527388 NC_060947.1 NC_000023.11 99.49 True indel: indel (> 5bp) 59575621 59584637 61536989 61527975 NC_060947.1 NC_000023.11 98.75 True local misassembly 59546827 59575279 61565446 61536990 NC_060947.1 NC_000023.11 98.77 True local misassembly 59511234 59546485 61600713 61565447 NC_060947.1 NC_000023.11 98.76 True relocation, inconsistency = 88434 59401998 59422799 61621522 61600714 NC_060947.1 NC_000023.11 98.68 True relocation, inconsistency = -88426 59489241 59490423 61622708 61621523 NC_060947.1 NC_000023.11 98.53 True local misassembly 59474996 59488899 61636619 61622709 NC_060947.1 NC_000023.11 98.99 True local misassembly 59456553 59472938 61653010 61636620 NC_060947.1 NC_000023.11 98.61 True relocation, inconsistency = -90493 59510919 59547045 61689137 61653011 NC_060947.1 NC_000023.11 98.84 True local misassembly 59502130 59508861 61695869 61689138 NC_060947.1 NC_000023.11 98.37 True local misassembly 59498497 59500071 61697447 61695870 NC_060947.1 NC_000023.11 98.8 True relocation, inconsistency = 90482 59385175 59408014 61720287 61697448 NC_060947.1 NC_000023.11 98.73 True indel: indel (> 5bp) 59354219 59385150 61751219 61720288 NC_060947.1 NC_000023.11 98.66 True local misassembly 59337310 59351990 61765904 61751220 NC_060947.1 NC_000023.11 98.77 True relocation, inconsistency = -655024 59863528 59992333 61893918 61765905 NC_060947.1 NC_000023.11 95.01 True relocation, inconsistency = -28789 59889641 59892316 61896598 61893919 NC_060947.1 NC_000023.11 98.86 True indel: indel (> 5bp) 59874681 59889469 61911393 61896599 NC_060947.1 NC_000023.11 98.74 True local misassembly 59846846 59874680 61941297 61913451 NC_060947.1 NC_000023.11 98.71 True local misassembly 59842174 59846845 61948031 61943355 NC_060947.1 NC_000023.11 98.85 True indel: indel (> 5bp) 59832556 59842005 61957485 61948032 NC_060947.1 NC_000023.11 98.76 True local misassembly 59818277 59830499 61969717 61957486 NC_060947.1 NC_000023.11 98.66 True local misassembly 59815949 59818276 61974107 61971777 NC_060947.1 NC_000023.11 99.06 True indel: indel (> 5bp) 59802901 59815777 61986986 61974108 NC_060947.1 NC_000023.11 98.85 True local misassembly 59794664 59802559 61994886 61986987 NC_060947.1 NC_000023.11 98.52 True relocation, inconsistency = 340739 59452220 59453924 61996591 61994887 NC_060947.1 NC_000023.11 98.37 True local misassembly 59410072 59451878 62038422 61996592 NC_060947.1 NC_000023.11 98.87 True local misassembly 59403074 59408014 62043361 62038423 NC_060947.1 NC_000023.11 99.17 True local misassembly 59384390 59400678 62059649 62043362 NC_060947.1 NC_000023.11 98.8 True local misassembly 59378398 59384389 62067700 62061706 NC_060947.1 NC_000023.11 98.88 True relocation, scaffold gap is present, inconsistency = -111284 59486559 59489281 62070829 62068101 NC_060947.1 NC_000023.11 98.64 True local misassembly 59446266 59482444 62107018 62070830 NC_060947.1 NC_000023.11 98.65 True fake: scaffold gap size wrong estimation (local) 59438914 59446089 62114568 62107394 NC_060947.1 NC_000023.11 98.56 True local misassembly 59436775 59438913 62118762 62116626 NC_060947.1 NC_000023.11 98.59 True relocation, inconsistency = 1105546 58249307 58331228 62200734 62118763 NC_060947.1 NC_000023.11 97.95 True relocation, inconsistency = -1111708 59353542 59361014 62208209 62200735 NC_060947.1 NC_000023.11 98.82 True indel: indel (> 5bp) 59318539 59353371 62243032 62208210 NC_060947.1 NC_000023.11 98.77 True relocation, inconsistency = -197436 59497192 59515974 62261828 62243033 NC_060947.1 NC_000023.11 98.78 True local misassembly 59450200 59495130 62306772 62261829 NC_060947.1 NC_000023.11 98.8 True local misassembly 59415207 59450199 62343662 62308660 NC_060947.1 NC_000023.11 98.83 True local misassembly 59405803 59414866 62352727 62343663 NC_060947.1 NC_000023.11 98.97 True relocation, inconsistency = 20566 59325427 59385236 62412542 62352728 NC_060947.1 NC_000023.11 98.81 True relocation, scaffold gap is present, inconsistency = 1425772 60861552 66758495 62463086 68325652 NC_060947.1 NC_000023.11 99.32 True local misassembly 66760254 71293695 68326780 72860190 NC_060947.1 NC_000023.11 99.77 True indel: stretch of mismatches 71294113 74579461 72860608 76146128 NC_060947.1 NC_000023.11 99.87 True local misassembly 74582314 78103067 76148981 79666392 NC_060947.1 NC_000023.11 99.57 True local misassembly 78103203 102430480 79670580 103989428 NC_060947.1 NC_000023.11 99.49 True local misassembly 102490483 102510844 104049435 104069779 NC_060947.1 NC_000023.11 99.18 True relocation, inconsistency = -9864 102513513 112733206 104082312 114280999 NC_060947.1 NC_000023.11 99.7 True relocation, scaffold gap is present, inconsistency = -44293 112739126 113755784 114331212 115347173 NC_060947.1 NC_000023.11 99.84 True indel: indel (> 5bp) 113755822 114136735 115347174 115725821 NC_060947.1 NC_000023.11 98.63 True local misassembly 114141958 114146597 115730975 115735599 NC_060947.1 NC_000023.11 99.16 True fake: not a misassembly (possible transposable element) 114146598 114147249 115737327 115736660 NC_060947.1 NC_000023.11 97.31 True fake: not a misassembly (possible transposable element) 114252256 114966143 115843333 116556506 NC_060947.1 NC_000023.11 99.68 True relocation, scaffold gap is present, inconsistency = -33192 114972032 121435600 116595587 123130917 NC_060947.1 NC_000023.11 99.29 True local misassembly 121439659 123490464 123130981 125180077 NC_060947.1 NC_000023.11 99.8 True indel: indel (<= 5bp) 123490615 139893976 125180227 141585256 NC_060947.1 NC_000023.11 99.36 True relocation, inconsistency = -12694 139893977 139897915 141589189 141585257 NC_060947.1 NC_000023.11 99.03 True inversion 139897916 142730725 141589190 144425493 NC_060947.1 NC_000023.11 99.64 True relocation, scaffold gap is present, inconsistency = -46373 142734531 147920051 144475672 149654279 NC_060947.1 NC_000023.11 99.49 True indel: indel (> 5bp) 147920296 147946883 149654530 149681116 NC_060947.1 NC_000023.11 99.9 True local misassembly 147987905 151341966 149722154 153074418 NC_060947.1 NC_000023.11 99.63 True fake: not a misassembly (possible transposable element) 151341967 151343160 153075612 153074419 NC_060947.1 NC_000023.11 100.0 True fake: not a misassembly (possible transposable element) 151343161 151373579 153075613 153106029 NC_060947.1 NC_000023.11 99.84 True inversion 151412187 151561443 153255294 153106030 NC_060947.1 NC_000023.11 99.89 True relocation, inconsistency = -38621 151522823 152827683 153255295 154591253 NC_060947.1 NC_000023.11 96.66 True relocation, inconsistency = -35419 152827739 152849590 154613115 154591254 NC_060947.1 NC_000023.11 99.72 True inversion 152849536 154257077 154613116 156030210 NC_060947.1 NC_000023.11 98.49 True CONTIG NC_000023.11 156040895 misassembled 1790 37123 10001 44821 NC_060947.1 NC_000024.10 98.45 True translocation, scaffold gap is present 65380 72449 101891 94822 NC_060948.1 NC_000024.10 99.93 True local misassembly 56134 64586 110344 101892 NC_060948.1 NC_000024.10 99.81 True local misassembly 53547 55010 113297 111834 NC_060948.1 NC_000024.10 97.4 True local misassembly 52877 53546 115797 115128 NC_060948.1 NC_000024.10 96.27 True local misassembly 46877 52876 122529 116530 NC_060948.1 NC_000024.10 99.8 True local misassembly 45207 46327 123650 122530 NC_060948.1 NC_000024.10 100.0 True indel: indel (> 5bp) 40226 45145 128570 123651 NC_060948.1 NC_000024.10 98.92 True local misassembly 34295 36248 131329 129376 NC_060948.1 NC_000024.10 99.85 True translocation, scaffold gap is present 1775 5539 222383 226211 NC_060947.1 NC_000024.10 98.2 True translocation, scaffold gap is present 10141 14213 226569 230642 NC_060948.1 NC_000024.10 99.78 True local misassembly 14862 21878 231294 238309 NC_060948.1 NC_000024.10 99.76 True local misassembly 26576 29213 238310 240950 NC_060948.1 NC_000024.10 97.92 True local misassembly 30703 31470 241343 242110 NC_060948.1 NC_000024.10 95.7 True local misassembly 33746 34840 242436 243531 NC_060948.1 NC_000024.10 95.62 True indel: indel (> 5bp) 34902 35474 243532 244104 NC_060948.1 NC_000024.10 96.68 True local misassembly 38829 39510 244105 244786 NC_060948.1 NC_000024.10 98.24 True relocation, inconsistency = 27382 68055 68687 245949 246581 NC_060948.1 NC_000024.10 99.21 True local misassembly 69370 70577 247020 248227 NC_060948.1 NC_000024.10 99.25 True indel: indel (> 5bp) 70578 72128 248350 249901 NC_060948.1 NC_000024.10 99.16 True local misassembly 73621 74438 250198 251015 NC_060948.1 NC_000024.10 96.7 True indel: indel (> 5bp) 74543 79097 251016 255568 NC_060948.1 NC_000024.10 99.34 True local misassembly 79409 92197 255569 268358 NC_060948.1 NC_000024.10 99.81 True local misassembly 92858 93628 268359 269129 NC_060948.1 NC_000024.10 97.92 True local misassembly 94839 95375 269130 269666 NC_060948.1 NC_000024.10 97.58 True local misassembly 97081 97697 270162 270778 NC_060948.1 NC_000024.10 97.57 True local misassembly 97918 99026 270779 271887 NC_060948.1 NC_000024.10 99.64 True local misassembly 99615 108205 271888 280496 NC_060948.1 NC_000024.10 99.67 True indel: indel (> 5bp) 108206 111093 280639 283536 NC_060948.1 NC_000024.10 98.24 True local misassembly 111318 115197 283537 287442 NC_060948.1 NC_000024.10 98.9 True indel: indel (> 5bp) 115198 115903 287529 288234 NC_060948.1 NC_000024.10 99.72 True local misassembly 116233 118827 288235 290829 NC_060948.1 NC_000024.10 99.69 True indel: indel (> 5bp) 118828 124755 290954 296882 NC_060948.1 NC_000024.10 99.75 True local misassembly 125279 126112 297848 298687 NC_060948.1 NC_000024.10 97.5 True indel: indel (> 5bp) 126113 139571 298737 312193 NC_060948.1 NC_000024.10 99.85 True indel: indel (> 5bp) 139669 143321 312194 315827 NC_060948.1 NC_000024.10 98.52 True local misassembly 146446 151712 316302 321575 NC_060948.1 NC_000024.10 99.53 True local misassembly 153633 154990 321576 322932 NC_060948.1 NC_000024.10 99.34 True indel: indel (> 5bp) 154991 155707 322966 323689 NC_060948.1 NC_000024.10 98.34 True local misassembly 158859 163210 323924 328276 NC_060948.1 NC_000024.10 99.24 True local misassembly 163349 165483 328764 330874 NC_060948.1 NC_000024.10 96.67 True indel: indel (<= 5bp) 165640 177170 331030 342543 NC_060948.1 NC_000024.10 99.75 True indel: indel (> 5bp) 177171 177720 342571 343120 NC_060948.1 NC_000024.10 99.64 True indel: indel (> 5bp) 177748 178537 343121 343910 NC_060948.1 NC_000024.10 99.75 True indel: indel (> 5bp) 178565 186351 343911 351697 NC_060948.1 NC_000024.10 99.95 True indel: indel (> 5bp) 186514 187328 351698 352512 NC_060948.1 NC_000024.10 99.75 True indel: indel (> 5bp) 187356 191681 352513 356822 NC_060948.1 NC_000024.10 98.45 True indel: indel (> 5bp) 191919 193378 356923 358386 NC_060948.1 NC_000024.10 98.77 True indel: indel (> 5bp) 193379 198622 358446 363690 NC_060948.1 NC_000024.10 99.2 True local misassembly 202480 203962 363691 365172 NC_060948.1 NC_000024.10 99.06 True indel: indel (> 5bp) 203963 204555 365338 365930 NC_060948.1 NC_000024.10 98.99 True local misassembly 204556 206498 366756 368696 NC_060948.1 NC_000024.10 99.85 True indel: indel (> 5bp) 206536 214438 368697 376599 NC_060948.1 NC_000024.10 99.94 True indel: indel (> 5bp) 214492 245915 376600 408027 NC_060948.1 NC_000024.10 99.78 True indel: indel (> 5bp) 245916 253410 408054 415552 NC_060948.1 NC_000024.10 99.63 True local misassembly 253909 254746 415717 416554 NC_060948.1 NC_000024.10 99.76 True indel: indel (> 5bp) 254747 258253 416720 420226 NC_060948.1 NC_000024.10 99.8 True indel: indel (> 5bp) 258254 263449 420261 425443 NC_060948.1 NC_000024.10 99.44 True local misassembly 264035 265262 425444 426670 NC_060948.1 NC_000024.10 98.45 True local misassembly 265759 266327 426671 427239 NC_060948.1 NC_000024.10 99.65 True local misassembly 266652 268322 427342 429032 NC_060948.1 NC_000024.10 96.92 True indel: indel (> 5bp) 268323 271444 429106 432223 NC_060948.1 NC_000024.10 99.52 True local misassembly 275121 279001 432800 436658 NC_060948.1 NC_000024.10 98.76 True local misassembly 279002 292380 437038 450430 NC_060948.1 NC_000024.10 99.45 True local misassembly 292846 299100 450431 456706 NC_060948.1 NC_000024.10 98.73 True indel: indel (> 5bp) 299124 299696 456707 457278 NC_060948.1 NC_000024.10 97.73 True local misassembly 300232 304911 457279 461948 NC_060948.1 NC_000024.10 99.06 True local misassembly 305293 306953 461949 463613 NC_060948.1 NC_000024.10 99.22 True indel: indel (> 5bp) 306954 315905 463779 472752 NC_060948.1 NC_000024.10 99.67 True local misassembly 317343 326022 472753 481430 NC_060948.1 NC_000024.10 99.86 True local misassembly 331319 334255 481991 484915 NC_060948.1 NC_000024.10 99.01 True local misassembly 334256 347188 485313 498252 NC_060948.1 NC_000024.10 99.61 True indel: indel (> 5bp) 347285 347835 498253 498803 NC_060948.1 NC_000024.10 100.0 True local misassembly 348519 354248 499181 504913 NC_060948.1 NC_000024.10 99.49 True local misassembly 354809 362733 505653 513575 NC_060948.1 NC_000024.10 99.55 True local misassembly 363262 363812 515160 515710 NC_060948.1 NC_000024.10 99.09 True local misassembly 363813 373999 515931 526115 NC_060948.1 NC_000024.10 99.77 True indel: indel (> 5bp) 374062 375589 526116 527641 NC_060948.1 NC_000024.10 99.35 True local misassembly 380653 385152 528172 532664 NC_060948.1 NC_000024.10 99.13 True local misassembly 385477 387009 532665 534198 NC_060948.1 NC_000024.10 99.8 True indel: indel (> 5bp) 387034 388779 534199 535958 NC_060948.1 NC_000024.10 98.86 True indel: indel (> 5bp) 388780 395071 535998 542295 NC_060948.1 NC_000024.10 99.63 True indel: indel (> 5bp) 395072 407635 542419 554974 NC_060948.1 NC_000024.10 99.69 True local misassembly 409095 410422 555847 557171 NC_060948.1 NC_000024.10 99.55 True local misassembly 411022 419226 557172 565391 NC_060948.1 NC_000024.10 99.14 True indel: indel (> 5bp) 419370 424230 565392 570252 NC_060948.1 NC_000024.10 99.88 True indel: indel (> 5bp) 424293 438271 570253 584251 NC_060948.1 NC_000024.10 99.34 True indel: indel (> 5bp) 438357 455774 584252 601651 NC_060948.1 NC_000024.10 99.83 True local misassembly 455993 462122 602221 608322 NC_060948.1 NC_000024.10 99.17 True indel: indel (> 5bp) 462123 467258 608348 613508 NC_060948.1 NC_000024.10 99.17 True indel: indel (> 5bp) 467283 475571 613509 621806 NC_060948.1 NC_000024.10 99.45 True indel: indel (> 5bp) 475572 476796 621836 623054 NC_060948.1 NC_000024.10 99.1 True indel: indel (> 5bp) 476969 480072 623312 626379 NC_060948.1 NC_000024.10 97.91 True local misassembly 480073 482148 626586 628663 NC_060948.1 NC_000024.10 99.71 True local misassembly 482497 489859 629194 636548 NC_060948.1 NC_000024.10 99.61 True indel: indel (> 5bp) 489860 497101 636727 643969 NC_060948.1 NC_000024.10 99.81 True indel: indel (> 5bp) 497102 500671 644025 647604 NC_060948.1 NC_000024.10 99.47 True indel: indel (> 5bp) 500672 501940 647687 648942 NC_060948.1 NC_000024.10 98.19 True indel: indel (<= 5bp) 502043 509839 649044 656843 NC_060948.1 NC_000024.10 99.46 True indel: indel (> 5bp) 509918 519569 656844 666501 NC_060948.1 NC_000024.10 99.72 True indel: indel (> 5bp) 519570 531132 666591 678143 NC_060948.1 NC_000024.10 99.62 True local misassembly 531133 542517 678538 689888 NC_060948.1 NC_000024.10 99.23 True indel: indel (> 5bp) 542518 544723 689946 692152 NC_060948.1 NC_000024.10 99.41 True local misassembly 544724 574260 692474 722005 NC_060948.1 NC_000024.10 99.71 True indel: indel (> 5bp) 574261 575047 722045 722831 NC_060948.1 NC_000024.10 99.87 True indel: indel (> 5bp) 575048 577353 722888 725192 NC_060948.1 NC_000024.10 99.48 True local misassembly 580608 626269 725193 770844 NC_060948.1 NC_000024.10 99.81 True indel: indel (> 5bp) 626270 634288 771007 779045 NC_060948.1 NC_000024.10 99.56 True local misassembly 634555 635415 779046 779899 NC_060948.1 NC_000024.10 98.14 True indel: indel (> 5bp) 635637 636731 780003 781078 NC_060948.1 NC_000024.10 96.62 True indel: indel (> 5bp) 636758 645284 781079 789610 NC_060948.1 NC_000024.10 99.44 True indel: indel (> 5bp) 645420 674097 789611 818279 NC_060948.1 NC_000024.10 99.81 True indel: indel (> 5bp) 674098 695061 818315 839283 NC_060948.1 NC_000024.10 99.94 True local misassembly 695062 700310 839964 845215 NC_060948.1 NC_000024.10 99.85 True indel: indel (> 5bp) 700311 712945 845244 857872 NC_060948.1 NC_000024.10 99.49 True translocation 699552 700947 864839 866234 NC_060947.1 NC_000024.10 99.64 True local misassembly 701205 716157 866235 881181 NC_060947.1 NC_000024.10 99.51 True indel: indel (> 5bp) 716292 718135 881182 883023 NC_060947.1 NC_000024.10 99.3 True indel: indel (> 5bp) 718136 719911 883046 884821 NC_060947.1 NC_000024.10 99.61 True local misassembly 720527 746057 884822 910342 NC_060947.1 NC_000024.10 99.86 True indel: indel (> 5bp) 746103 753403 910343 917649 NC_060947.1 NC_000024.10 99.55 True local misassembly 755080 757338 919970 922212 NC_060947.1 NC_000024.10 98.54 True indel: indel (> 5bp) 757339 773806 922235 938733 NC_060947.1 NC_000024.10 99.13 True indel: indel (> 5bp) 773807 777301 938858 942346 NC_060947.1 NC_000024.10 99.48 True local misassembly 777302 779393 943201 945290 NC_060947.1 NC_000024.10 96.7 True indel: indel (> 5bp) 779394 781067 945440 947128 NC_060947.1 NC_000024.10 97.93 True local misassembly 781444 782980 947859 949397 NC_060947.1 NC_000024.10 99.35 True local misassembly 782981 796276 950113 963401 NC_060947.1 NC_000024.10 99.54 True indel: indel (> 5bp) 796459 803899 963686 971132 NC_060947.1 NC_000024.10 99.23 True indel: indel (> 5bp) 803900 813772 971325 981193 NC_060947.1 NC_000024.10 99.68 True indel: indel (> 5bp) 813874 823326 981194 990641 NC_060947.1 NC_000024.10 99.2 True local misassembly 824709 846343 990917 1012548 NC_060947.1 NC_000024.10 99.5 True indel: indel (> 5bp) 846500 864995 1012549 1031023 NC_060947.1 NC_000024.10 99.32 True indel: indel (> 5bp) 864996 882521 1031045 1048545 NC_060947.1 NC_000024.10 99.33 True indel: indel (> 5bp) 882703 883954 1048770 1050021 NC_060947.1 NC_000024.10 99.28 True local misassembly 890004 897532 1050022 1057562 NC_060947.1 NC_000024.10 99.58 True indel: indel (> 5bp) 897614 907804 1057563 1067757 NC_060947.1 NC_000024.10 99.45 True local misassembly 908064 914217 1067758 1073917 NC_060947.1 NC_000024.10 99.53 True local misassembly 914498 921839 1073918 1081246 NC_060947.1 NC_000024.10 99.5 True indel: indel (> 5bp) 921975 924363 1081247 1083628 NC_060947.1 NC_000024.10 99.46 True local misassembly 924364 925626 1084700 1085963 NC_060947.1 NC_000024.10 99.05 True local misassembly 926512 946709 1085964 1106165 NC_060947.1 NC_000024.10 99.8 True local misassembly 947141 951484 1106166 1110509 NC_060947.1 NC_000024.10 99.77 True indel: indel (> 5bp) 951657 968536 1110510 1127413 NC_060947.1 NC_000024.10 99.67 True local misassembly 969528 970250 1127940 1128662 NC_060947.1 NC_000024.10 96.27 True indel: indel (> 5bp) 970395 980250 1128663 1138517 NC_060947.1 NC_000024.10 99.84 True local misassembly 980569 984279 1138518 1142231 NC_060947.1 NC_000024.10 99.52 True local misassembly 984280 985021 1142575 1143318 NC_060947.1 NC_000024.10 98.25 True indel: indel (> 5bp) 985022 996047 1143423 1154434 NC_060947.1 NC_000024.10 99.25 True local misassembly 996777 1004189 1154435 1161827 NC_060947.1 NC_000024.10 99.11 True indel: indel (> 5bp) 1004250 1007658 1161828 1165236 NC_060947.1 NC_000024.10 99.62 True indel: indel (> 5bp) 1007729 1009464 1165237 1166962 NC_060947.1 NC_000024.10 98.27 True indel: indel (> 5bp) 1009519 1010723 1166963 1168175 NC_060947.1 NC_000024.10 99.01 True indel: indel (> 5bp) 1010753 1011578 1168176 1168999 NC_060947.1 NC_000024.10 98.55 True local misassembly 1013594 1014122 1169000 1169528 NC_060947.1 NC_000024.10 100.0 True indel: indel (> 5bp) 1014123 1018245 1169599 1173729 NC_060947.1 NC_000024.10 99.35 True local misassembly 1018454 1019080 1173730 1174356 NC_060947.1 NC_000024.10 99.04 True local misassembly 1019497 1021081 1174357 1175951 NC_060947.1 NC_000024.10 98.37 True local misassembly 1021871 1023719 1176341 1178189 NC_060947.1 NC_000024.10 99.57 True indel: indel (> 5bp) 1023960 1024716 1178495 1179250 NC_060947.1 NC_000024.10 99.74 True indel: indel (> 5bp) 1024803 1029009 1179251 1183495 NC_060947.1 NC_000024.10 98.68 True local misassembly 1029010 1034367 1183837 1189196 NC_060947.1 NC_000024.10 99.66 True indel: indel (> 5bp) 1034396 1036556 1189197 1191361 NC_060947.1 NC_000024.10 99.45 True indel: indel (> 5bp) 1036588 1043442 1191362 1198215 NC_060947.1 NC_000024.10 99.4 True local misassembly 1044193 1086706 1198378 1240862 NC_060947.1 NC_000024.10 99.84 True indel: indel (> 5bp) 1086920 1093905 1241115 1248088 NC_060947.1 NC_000024.10 99.24 True indel: indel (> 5bp) 1093936 1097252 1248089 1251401 NC_060947.1 NC_000024.10 98.94 True indel: indel (> 5bp) 1097253 1099199 1251430 1253376 NC_060947.1 NC_000024.10 99.69 True local misassembly 1099640 1108992 1253377 1262729 NC_060947.1 NC_000024.10 99.8 True local misassembly 1109591 1110834 1262730 1263971 NC_060947.1 NC_000024.10 99.12 True local misassembly 1111633 1118515 1264314 1271213 NC_060947.1 NC_000024.10 99.29 True indel: indel (> 5bp) 1118516 1121689 1271397 1274576 NC_060947.1 NC_000024.10 98.99 True local misassembly 1123710 1130113 1274577 1280976 NC_060947.1 NC_000024.10 99.81 True indel: indel (> 5bp) 1130159 1141080 1280977 1291919 NC_060947.1 NC_000024.10 99.56 True indel: indel (> 5bp) 1141081 1143111 1291964 1293990 NC_060947.1 NC_000024.10 99.36 True indel: indel (> 5bp) 1143199 1144284 1293991 1295074 NC_060947.1 NC_000024.10 99.17 True local misassembly 1144717 1146103 1295075 1296461 NC_060947.1 NC_000024.10 99.64 True local misassembly 1146104 1146789 1296690 1297375 NC_060947.1 NC_000024.10 97.52 True local misassembly 1147006 1147758 1297820 1298572 NC_060947.1 NC_000024.10 97.61 True indel: indel (> 5bp) 1147759 1153251 1298687 1304190 NC_060947.1 NC_000024.10 99.55 True local misassembly 1153586 1157004 1304191 1307601 NC_060947.1 NC_000024.10 98.95 True local misassembly 1157321 1163923 1307602 1314212 NC_060947.1 NC_000024.10 99.49 True indel: indel (> 5bp) 1163924 1175017 1314308 1325433 NC_060947.1 NC_000024.10 99.4 True local misassembly 1175757 1216271 1325434 1365963 NC_060947.1 NC_000024.10 99.73 True indel: indel (> 5bp) 1216308 1216893 1365964 1366566 NC_060947.1 NC_000024.10 95.19 True local misassembly 1217513 1218939 1367339 1368765 NC_060947.1 NC_000024.10 99.79 True local misassembly 1218940 1219601 1369233 1369894 NC_060947.1 NC_000024.10 98.79 True local misassembly 1219602 1220111 1375720 1376224 NC_060947.1 NC_000024.10 97.45 True local misassembly 1220112 1246313 1376460 1402667 NC_060947.1 NC_000024.10 99.84 True indel: indel (> 5bp) 1246406 1251797 1402838 1408229 NC_060947.1 NC_000024.10 99.87 True local misassembly 1251798 1253192 1410225 1411624 NC_060947.1 NC_000024.10 98.36 True indel: indel (> 5bp) 1253220 1256805 1411625 1415214 NC_060947.1 NC_000024.10 99.08 True indel: indel (> 5bp) 1256831 1266564 1415215 1424981 NC_060947.1 NC_000024.10 98.51 True indel: indel (> 5bp) 1266565 1274418 1425029 1432859 NC_060947.1 NC_000024.10 99.07 True local misassembly 1274957 1285352 1432860 1443253 NC_060947.1 NC_000024.10 99.87 True indel: indel (> 5bp) 1285353 1293119 1443390 1451175 NC_060947.1 NC_000024.10 99.58 True indel: indel (> 5bp) 1293120 1303862 1451212 1461976 NC_060947.1 NC_000024.10 99.4 True indel: indel (> 5bp) 1303891 1307341 1461977 1465425 NC_060947.1 NC_000024.10 99.25 True relocation, inconsistency = -40732 1307420 1315589 1506236 1514374 NC_060947.1 NC_000024.10 98.96 True indel: indel (> 5bp) 1315736 1333833 1514375 1532442 NC_060947.1 NC_000024.10 99.27 True indel: indel (> 5bp) 1333834 1334896 1532477 1533542 NC_060947.1 NC_000024.10 99.16 True indel: indel (> 5bp) 1334897 1359996 1533575 1558654 NC_060947.1 NC_000024.10 99.42 True indel: indel (> 5bp) 1360021 1367285 1558655 1565923 NC_060947.1 NC_000024.10 99.42 True indel: indel (> 5bp) 1367333 1389134 1565924 1587718 NC_060947.1 NC_000024.10 99.21 True local misassembly 1389913 1390597 1588440 1589139 NC_060947.1 NC_000024.10 96.71 True indel: indel (> 5bp) 1390598 1396648 1589180 1595230 NC_060947.1 NC_000024.10 99.87 True indel: indel (> 5bp) 1396649 1410222 1595259 1608859 NC_060947.1 NC_000024.10 99.28 True indel: indel (> 5bp) 1410223 1411093 1608894 1609763 NC_060947.1 NC_000024.10 98.51 True indel: indel (> 5bp) 1411094 1438186 1609798 1636890 NC_060947.1 NC_000024.10 99.73 True local misassembly 1439472 1440160 1640231 1640921 NC_060947.1 NC_000024.10 97.68 True local misassembly 1440161 1467670 1641335 1668847 NC_060947.1 NC_000024.10 99.81 True local misassembly 1467671 1480401 1669144 1681868 NC_060947.1 NC_000024.10 99.45 True local misassembly 1480938 1495733 1681967 1696728 NC_060947.1 NC_000024.10 99.33 True local misassembly 1495734 1499159 1698241 1701666 NC_060947.1 NC_000024.10 99.88 True local misassembly 1499160 1506593 1702440 1709871 NC_060947.1 NC_000024.10 99.6 True indel: indel (> 5bp) 1506616 1509014 1709872 1712274 NC_060947.1 NC_000024.10 99.5 True indel: indel (> 5bp) 1509040 1532018 1712275 1735255 NC_060947.1 NC_000024.10 99.57 True local misassembly 1532764 1556911 1735915 1760063 NC_060947.1 NC_000024.10 99.68 True indel: indel (> 5bp) 1556952 1560462 1760064 1763572 NC_060947.1 NC_000024.10 99.17 True local misassembly 1560702 1569066 1764802 1773162 NC_060947.1 NC_000024.10 99.58 True local misassembly 1569067 1604609 1773384 1808939 NC_060947.1 NC_000024.10 99.58 True indel: indel (> 5bp) 1604638 1651440 1808940 1855757 NC_060947.1 NC_000024.10 99.94 True indel: indel (> 5bp) 1651958 1683556 1856121 1887732 NC_060947.1 NC_000024.10 99.88 True local misassembly 1683557 1700140 1888069 1904627 NC_060947.1 NC_000024.10 99.73 True local misassembly 1700436 1706443 1904628 1910635 NC_060947.1 NC_000024.10 99.58 True local misassembly 1706718 1711898 1911196 1916369 NC_060947.1 NC_000024.10 99.71 True local misassembly 1712206 1744625 1916916 1949345 NC_060947.1 NC_000024.10 99.8 True translocation, scaffold gap is present 1807342 8703033 2133008 9046914 NC_060948.1 NC_000024.10 98.96 True fake: scaffold gap size wrong estimation (local) 8706220 8708499 9055175 9057455 NC_060948.1 NC_000024.10 99.91 True relocation, scaffold gap is present, inconsistency = -45057 8713622 8717855 9107635 9111868 NC_060948.1 NC_000024.10 100.0 True fake: scaffold gap size wrong estimation (local) 8718973 8720576 9112716 9114319 NC_060948.1 NC_000024.10 100.0 True fake: scaffold gap size wrong estimation (local) 8722510 8968258 9116372 9362129 NC_060948.1 NC_000024.10 99.94 True relocation, inconsistency = 20323 8988582 8995371 9362130 9368917 NC_060948.1 NC_000024.10 99.78 True relocation, inconsistency = 81196 9076568 9090020 9368918 9382376 NC_060948.1 NC_000024.10 99.83 True relocation, inconsistency = 81118 9171139 9192294 9382377 9403590 NC_060948.1 NC_000024.10 99.43 True relocation, scaffold gap is present, inconsistency = 32903 9275332 9275947 9453725 9454340 NC_060948.1 NC_000024.10 100.0 True relocation, inconsistency = 81112 9357060 9367518 9454341 9464821 NC_060948.1 NC_000024.10 99.65 True relocation, inconsistency = 81222 9448741 9451132 9464822 9467211 NC_060948.1 NC_000024.10 99.67 True relocation, inconsistency = 81135 9532268 9537992 9467212 9472940 NC_060948.1 NC_000024.10 99.7 True indel: indel (> 5bp) 9537993 9539098 9472967 9474073 NC_060948.1 NC_000024.10 99.73 True relocation, inconsistency = 81225 9620324 9639498 9474074 9493260 NC_060948.1 NC_000024.10 99.67 True indel: indel (> 5bp) 9639527 9654839 9493261 9508566 NC_060948.1 NC_000024.10 99.65 True relocation, inconsistency = 81179 9736019 9761300 9508567 9533848 NC_060948.1 NC_000024.10 99.67 True indel: indel (> 5bp) 9761301 9763241 9533879 9535818 NC_060948.1 NC_000024.10 99.38 True relocation, inconsistency = 81271 9844513 10111384 9535819 9802670 NC_060948.1 NC_000024.10 99.97 True relocation, inconsistency = -10004 10111385 10136216 9812675 9837517 NC_060948.1 NC_000024.10 99.82 True indel: indel (> 5bp) 10136419 10139447 9837662 9840690 NC_060948.1 NC_000024.10 99.47 True indel: indel (> 5bp) 10139448 10191466 9840722 9892735 NC_060948.1 NC_000024.10 99.86 True indel: indel (> 5bp) 10191495 10206778 9892736 9908037 NC_060948.1 NC_000024.10 99.24 True relocation, inconsistency = 20323 10227102 10235421 9908038 9916366 NC_060948.1 NC_000024.10 99.74 True indel: indel (> 5bp) 10235443 10536005 9916367 10216877 NC_060948.1 NC_000024.10 99.97 True local misassembly 10536350 10566171 10216878 10246699 NC_060948.1 NC_000024.10 99.98 True local misassembly 10567129 10568530 10246845 10248246 NC_060948.1 NC_000024.10 100.0 True local misassembly 10570236 10575026 10248247 10253037 NC_060948.1 NC_000024.10 99.94 True local misassembly 10575027 10576020 10254230 10255224 NC_060948.1 NC_000024.10 99.6 True local misassembly 10576021 10583122 10256930 10264036 NC_060948.1 NC_000024.10 99.87 True local misassembly 10583362 10586265 10264037 10266944 NC_060948.1 NC_000024.10 99.76 True relocation, scaffold gap is present, inconsistency = 107556 10743822 10862082 10434588 10316945 NC_060948.1 NC_000024.10 97.66 True relocation, inconsistency = 81325 10639712 10662156 10457373 10434929 NC_060948.1 NC_000024.10 99.87 True relocation, inconsistency = -28590 10627092 10667941 10498602 10457734 NC_060948.1 NC_000024.10 99.81 True local misassembly 10613641 10627091 10512394 10498941 NC_060948.1 NC_000024.10 99.86 True local misassembly 10604723 10618242 10525917 10512395 NC_060948.1 NC_000024.10 99.71 True local misassembly 10598160 10602112 10530098 10526145 NC_060948.1 NC_000024.10 99.87 True indel: indel (> 5bp) 10592382 10598159 10536048 10530270 NC_060948.1 NC_000024.10 99.72 True local misassembly 10578947 10586596 10544039 10536387 NC_060948.1 NC_000024.10 99.9 True relocation, scaffold gap is present, inconsistency = 219357 10856831 10891361 10594917 10629361 NC_060948.1 NC_000024.10 96.52 True indel: indel (> 5bp) 10891596 10893878 10629613 10631893 NC_060948.1 NC_000024.10 99.87 True local misassembly 10894472 10895298 10631894 10632714 NC_060948.1 NC_000024.10 98.31 True relocation, scaffold gap is present, inconsistency = -18702 10895299 10901254 10651417 10657372 NC_060948.1 NC_000024.10 99.65 True indel: indel (> 5bp) 10901285 10908669 10657373 10664773 NC_060948.1 NC_000024.10 99.45 True indel: indel (> 5bp) 10908695 10913643 10664774 10669737 NC_060948.1 NC_000024.10 99.54 True fake: scaffold gap size wrong estimation (local) 10914257 10917587 10670733 10674058 NC_060948.1 NC_000024.10 99.52 True relocation, scaffold gap is present, inconsistency = 11238 10931312 10934490 10676545 10679715 NC_060948.1 NC_000024.10 99.37 True fake: scaffold gap size wrong estimation (local) 10940853 10950008 10682443 10691573 NC_060948.1 NC_000024.10 99.47 True fake: scaffold gap size wrong estimation (local) 10950979 10953087 10691903 10694011 NC_060948.1 NC_000024.10 100.0 True relocation, scaffold gap is present, inconsistency = -42128 10961156 11028196 10744208 10809659 NC_060948.1 NC_000024.10 96.83 True fake: scaffold gap size wrong estimation (local) 11028354 11034613 10810480 10816758 NC_060948.1 NC_000024.10 99.21 True fake: scaffold gap size wrong estimation (local) 11035215 11070807 10817293 10852900 NC_060948.1 NC_000024.10 99.75 True fake: scaffold gap size wrong estimation (local) 11076305 11112145 10855136 10890419 NC_060948.1 NC_000024.10 96.02 True fake: scaffold gap size wrong estimation (local) 11112324 11114447 10891943 10894056 NC_060948.1 NC_000024.10 99.53 True local misassembly 11116309 11118779 10894057 10896525 NC_060948.1 NC_000024.10 99.51 True fake: scaffold gap size wrong estimation (local) 11120008 11130337 10898185 10908519 NC_060948.1 NC_000024.10 99.84 True fake: scaffold gap size wrong estimation (local) 11132923 11133682 10909928 10910687 NC_060948.1 NC_000024.10 99.87 True local misassembly 11134773 11146559 10910688 10922486 NC_060948.1 NC_000024.10 99.87 True fake: scaffold gap size wrong estimation (local) 11147263 11181150 10923570 10956868 NC_060948.1 NC_000024.10 98.12 True fake: scaffold gap size wrong estimation (local) 11181328 11184923 10957781 10961377 NC_060948.1 NC_000024.10 99.97 True fake: scaffold gap size wrong estimation (local) 11185366 11188547 10962534 10965694 NC_060948.1 NC_000024.10 99.34 True fake: scaffold gap size wrong estimation (local) 11190631 11238502 10967285 11016992 NC_060948.1 NC_000024.10 99.13 True fake: scaffold gap size wrong estimation (local) 11239098 11245355 11017248 11023374 NC_060948.1 NC_000024.10 97.33 True fake: scaffold gap size wrong estimation (local) 11246213 11250286 11024267 11028340 NC_060948.1 NC_000024.10 99.98 True fake: scaffold gap size wrong estimation (local) 11251040 11814259 11029161 11592902 NC_060948.1 NC_000024.10 99.78 True relocation, scaffold gap is present, inconsistency = 684655 12548915 12553454 11642903 11647442 NC_060948.1 NC_000024.10 99.93 True fake: scaffold gap size wrong estimation (local) 12554172 12566941 11647710 11660374 NC_060948.1 NC_000024.10 98.95 True fake: scaffold gap size wrong estimation (local) 12567276 12569079 11662182 11663986 NC_060948.1 NC_000024.10 99.94 True local misassembly 12570520 12576466 11663987 11669948 NC_060948.1 NC_000024.10 99.41 True fake: scaffold gap size wrong estimation (local) 12576863 12580711 11670089 11673795 NC_060948.1 NC_000024.10 96.29 True fake: scaffold gap size wrong estimation (local) 12581105 20967340 11674124 20060815 NC_060948.1 NC_000024.10 99.91 True relocation, inconsistency = -19479 20970899 20972174 20083853 20085128 NC_060948.1 NC_000024.10 99.61 True local misassembly 20983602 20984951 20097455 20098804 NC_060948.1 NC_000024.10 98.37 True local misassembly 20986081 20986615 20098805 20099339 NC_060948.1 NC_000024.10 99.25 True local misassembly 20987745 20989162 20099340 20100757 NC_060948.1 NC_000024.10 99.01 True local misassembly 20994407 20995569 20106510 20107670 NC_060948.1 NC_000024.10 97.42 True relocation, inconsistency = -8635 21004351 21007176 20125087 20127911 NC_060948.1 NC_000024.10 97.88 True relocation, inconsistency = -23509 21023526 21026256 20167770 20170504 NC_060948.1 NC_000024.10 99.41 True local misassembly 21026257 21030777 20171009 20175528 NC_060948.1 NC_000024.10 99.69 True local misassembly 21031403 21034904 20175529 20179029 NC_060948.1 NC_000024.10 99.57 True local misassembly 21034905 21047284 20183033 20195407 NC_060948.1 NC_000024.10 99.22 True relocation, scaffold gap is present, inconsistency = -19022 21093347 21098278 20260492 20265424 NC_060948.1 NC_000024.10 99.19 True local misassembly 21099896 21102803 20265425 20268332 NC_060948.1 NC_000024.10 99.76 True local misassembly 21107396 21114424 20274780 20281808 NC_060948.1 NC_000024.10 99.87 True local misassembly 21114425 21116050 20282433 20284058 NC_060948.1 NC_000024.10 99.88 True relocation, inconsistency = -11374 21116051 21118717 20295433 20298099 NC_060948.1 NC_000024.10 99.96 True local misassembly 21118859 21120817 20301230 20303188 NC_060948.1 NC_000024.10 99.9 True local misassembly 21127674 21143237 20303189 20318760 NC_060948.1 NC_000024.10 99.84 True relocation, inconsistency = 43859 21194659 21195422 20326323 20327086 NC_060948.1 NC_000024.10 95.03 True local misassembly 21196772 21198140 20327810 20329178 NC_060948.1 NC_000024.10 95.84 True local misassembly 21198516 21202711 20329179 20333374 NC_060948.1 NC_000024.10 98.74 True local misassembly 21204213 21204933 20333375 20334094 NC_060948.1 NC_000024.10 95.84 True indel: indel (> 5bp) 21205059 21206381 20334095 20335418 NC_060948.1 NC_000024.10 95.32 True local misassembly 21209270 21212361 20337930 20341020 NC_060948.1 NC_000024.10 99.61 True local misassembly 21218017 21219844 20342677 20344505 NC_060948.1 NC_000024.10 99.29 True indel: indel (> 5bp) 21219845 21896924 20344631 21021661 NC_060948.1 NC_000024.10 99.98 True local misassembly 21939492 22621537 21064239 21747863 NC_060948.1 NC_000024.10 99.93 True fake: scaffold gap size wrong estimation (local) 22621848 22623324 21748372 21749847 NC_060948.1 NC_000024.10 99.93 True relocation, scaffold gap is present, inconsistency = -37965 22640816 22760418 21805304 21924915 NC_060948.1 NC_000024.10 97.87 True inversion 23044251 23497157 22377696 21924916 NC_060948.1 NC_000024.10 99.9 True relocation, inconsistency = -283828 23213330 23582346 22377697 22746680 NC_060948.1 NC_000024.10 96.16 True relocation, inconsistency = 504203 24086550 26102100 24775989 22746681 NC_060948.1 NC_000024.10 96.19 True relocation, inconsistency = -647483 23977924 24734032 24775990 25541603 NC_060948.1 NC_000024.10 96.85 True relocation, inconsistency = 1619962 26357940 27465673 25545549 26656598 NC_060948.1 NC_000024.10 98.47 True indel: stretch of mismatches 27465773 27477893 26656698 26668838 NC_060948.1 NC_000024.10 99.22 True local misassembly 27479775 27482481 26668839 26671520 NC_060948.1 NC_000024.10 95.49 True indel: indel (> 5bp) 27482482 27484156 26671551 26673210 NC_060948.1 NC_000024.10 97.25 True relocation, scaffold gap is present, inconsistency = -15775321 41708840 41713398 56673215 56678002 NC_060948.1 NC_000024.10 96.2 True relocation, inconsistency = -9465690 32247709 32341382 56678003 56771509 NC_060948.1 NC_000024.10 98.77 True relocation, scaffold gap is present, inconsistency = 29665789 62057172 62454081 56821510 57216736 NC_060948.1 NC_000024.10 98.77 True CONTIG NC_000024.10 57227415 misassembled 20960335 20963446 1 3112 NC_060948.1 NT_187395.1 99.97 True indel: indel (> 5bp) 20963572 20973829 3113 13370 NC_060948.1 NT_187395.1 99.88 True indel: indel (> 5bp) 20973830 20975184 13496 14850 NC_060948.1 NT_187395.1 99.48 True indel: indel (> 5bp) 20975185 20976265 14983 16067 NC_060948.1 NT_187395.1 98.99 True indel: indel (> 5bp) 20976391 20980837 16068 20514 NC_060948.1 NT_187395.1 99.93 True indel: indel (> 5bp) 20980838 20986613 20640 26415 NC_060948.1 NT_187395.1 99.81 True local misassembly 20987743 20994199 26416 32872 NC_060948.1 NT_187395.1 99.81 True local misassembly 20997084 21001451 32873 37240 NC_060948.1 NT_187395.1 99.77 True CONTIG NT_187395.1 37240 correct 126606614 126608618 1 2004 NC_060925.1 NT_187400.1 98.6 True fake: scaffold gap size wrong estimation (local) 126610580 126613060 8108 10589 NC_060925.1 NT_187400.1 99.6 True fake: scaffold gap size wrong estimation (local) 126622284 126623961 19784 21461 NC_060925.1 NT_187400.1 95.89 True CONTIG NT_187400.1 21476 correct 126593607 126598008 4416 14 NC_060925.1 NT_187401.1 96.62 True CONTIG NT_187401.1 4416 correct 29738923 29740310 1 1387 NC_060943.1 NT_187406.1 98.99 True fake: scaffold gap size wrong estimation (local) 29746601 29748103 10822 12324 NC_060943.1 NT_187406.1 99.47 True CONTIG NT_187406.1 12399 correct 49588206 49588790 967 383 NC_060929.1 NT_187407.1 96.75 True CONTIG NT_187407.1 37690 correct_unaligned 15336634 15339773 3130 1 NC_060939.1 NT_187420.1 99.62 True fake: scaffold gap size wrong estimation (local) 15335125 15336220 4555 3452 NC_060939.1 NT_187420.1 98.2 True fake: scaffold gap size wrong estimation (local) 15330355 15331426 11256 10185 NC_060939.1 NT_187420.1 98.04 True local misassembly 15325526 15329071 14792 11257 NC_060939.1 NT_187420.1 99.55 True local misassembly 15323015 15325120 16898 14793 NC_060939.1 NT_187420.1 99.86 True indel: indel (> 5bp) 15319229 15322879 20549 16899 NC_060939.1 NT_187420.1 99.89 True fake: scaffold gap size wrong estimation (local) 15292912 15317507 46867 22295 NC_060939.1 NT_187420.1 99.67 True relocation, inconsistency = 10920 15277907 15281991 50972 46868 NC_060939.1 NT_187420.1 99.42 True fake: scaffold gap size wrong estimation (local) 15265963 15273540 63048 55455 NC_060939.1 NT_187420.1 99.25 True fake: scaffold gap size wrong estimation (local) 15257582 15262338 72227 67465 NC_060939.1 NT_187420.1 99.85 True fake: scaffold gap size wrong estimation (local) 15243896 15254924 85311 74288 NC_060939.1 NT_187420.1 99.76 True local misassembly 15240643 15242548 87559 85641 NC_060939.1 NT_187420.1 97.76 True relocation, inconsistency = 9155 15228573 15231487 90464 87560 NC_060939.1 NT_187420.1 99.35 True local misassembly 15220814 15226211 95857 90465 NC_060939.1 NT_187420.1 99.67 True indel: indel (> 5bp) 15216302 15220723 100274 95858 NC_060939.1 NT_187420.1 99.73 True fake: scaffold gap size wrong estimation (local) 15204205 15216301 112411 100317 NC_060939.1 NT_187420.1 99.88 True local misassembly 15180520 15202329 134218 112412 NC_060939.1 NT_187420.1 99.86 True indel: indel (> 5bp) 15157428 15180350 157140 134219 NC_060939.1 NT_187420.1 99.81 True indel: indel (> 5bp) 15153036 15157427 161704 157312 NC_060939.1 NT_187420.1 99.91 True local misassembly 15150591 15151846 162952 161705 NC_060939.1 NT_187420.1 98.81 True fake: scaffold gap size wrong estimation (local) 15138831 15150590 175742 163986 NC_060939.1 NT_187420.1 99.83 True fake: scaffold gap size wrong estimation (local) 15108951 15138830 205769 175888 NC_060939.1 NT_187420.1 99.87 True local misassembly 15084994 15106891 227673 205770 NC_060939.1 NT_187420.1 99.85 True fake: scaffold gap size wrong estimation (local) 14979122 15084497 333439 228077 NC_060939.1 NT_187420.1 99.87 True fake: scaffold gap size wrong estimation (local) 14957735 14976828 354375 335285 NC_060939.1 NT_187420.1 99.82 True local misassembly 14948499 14957734 366683 357448 NC_060939.1 NT_187420.1 99.91 True local misassembly 14935752 14943896 374828 366684 NC_060939.1 NT_187420.1 99.58 True indel: indel (> 5bp) 14925655 14935670 384844 374829 NC_060939.1 NT_187420.1 99.59 True indel: indel (> 5bp) 14919671 14925567 390730 384845 NC_060939.1 NT_187420.1 99.66 True fake: scaffold gap size wrong estimation (local) 14918361 14919643 392061 390779 NC_060939.1 NT_187420.1 99.77 True CONTIG NT_187420.1 392061 misassembled 10959632 10963518 3887 1 NC_060945.1 NT_187423.1 99.72 True CONTIG NT_187423.1 3920 correct 14256088 14347488 92719 1 NC_060939.1 NT_187424.1 96.42 True CONTIG NT_187424.1 92983 correct 14002237 14016999 14754 1 NC_060939.1 NT_187425.1 99.38 True translocation, scaffold gap is present 8128000 8130469 19868 22345 NC_060938.1 NT_187425.1 98.47 True local misassembly 8134567 8135460 22346 23240 NC_060938.1 NT_187425.1 98.44 True translocation, scaffold gap is present 13982798 13986847 32222 28174 NC_060939.1 NT_187425.1 99.68 True fake: scaffold gap size wrong estimation (local) 13965165 13971325 49834 43700 NC_060939.1 NT_187425.1 98.77 True fake: scaffold gap size wrong estimation (local) 13952156 13958738 62681 56114 NC_060939.1 NT_187425.1 98.72 True fake: scaffold gap size wrong estimation (local) 13950770 13951409 64017 63378 NC_060939.1 NT_187425.1 99.53 True fake: scaffold gap size wrong estimation (local) 13947355 13950558 67413 64210 NC_060939.1 NT_187425.1 99.44 True indel: indel (> 5bp) 13946437 13947319 68296 67414 NC_060939.1 NT_187425.1 99.55 True local misassembly 13936753 13945738 77266 68297 NC_060939.1 NT_187425.1 98.51 True indel: indel (> 5bp) 13927689 13936702 86259 77267 NC_060939.1 NT_187425.1 98.72 True indel: indel (> 5bp) 13924718 13927688 89240 86285 NC_060939.1 NT_187425.1 98.62 True local misassembly 13921342 13924717 96304 92940 NC_060939.1 NT_187425.1 98.76 True indel: indel (> 5bp) 13920242 13921341 97454 96355 NC_060939.1 NT_187425.1 99.55 True indel: indel (> 5bp) 13917431 13920241 100286 97480 NC_060939.1 NT_187425.1 98.68 True local misassembly 13916097 13917430 103898 102555 NC_060939.1 NT_187425.1 97.92 True indel: indel (> 5bp) 13915414 13916066 104536 103899 NC_060939.1 NT_187425.1 96.17 True indel: indel (> 5bp) 13909339 13915413 110562 104567 NC_060939.1 NT_187425.1 96.46 True relocation, inconsistency = 7544312 6363117 6364497 112447 111092 NC_060939.1 NT_187425.1 96.38 True CONTIG NT_187425.1 112505 misassembled 17508922 17512968 4055 9 NC_060937.1 NT_187426.1 99.75 True CONTIG NT_187426.1 4055 correct 15401421 15422570 22689 1533 NC_060939.1 NT_187432.1 99.61 True CONTIG NT_187432.1 22689 correct 16009473 16013715 4252 9 NC_060939.1 NT_187433.1 99.65 True indel: indel (> 5bp) 16000954 16009302 12598 4253 NC_060939.1 NT_187433.1 99.59 True local misassembly 15946864 15997709 63448 12599 NC_060939.1 NT_187433.1 99.84 True fake: scaffold gap size wrong estimation (local) 15890917 15946753 120213 63654 NC_060939.1 NT_187433.1 98.04 True fake: scaffold gap size wrong estimation (local) 15872768 15890722 138126 120362 NC_060939.1 NT_187433.1 98.77 True CONTIG NT_187433.1 138126 correct 16674907 16680563 1 5666 NC_060939.1 NT_187434.1 99.21 True CONTIG NT_187434.1 5674 correct 8971243 8979365 8124 2 NC_060938.1 NT_187435.1 99.78 True CONTIG NT_187435.1 8127 correct 11781980 11788299 42 6361 NC_060946.1 NT_187436.1 99.84 True CONTIG NT_187436.1 6361 correct 11801915 11807267 5353 1 NC_060946.1 NT_187437.1 99.7 True CONTIG NT_187437.1 5353 correct 11258320 11261572 3253 1 NC_060937.1 NT_187438.1 99.88 True CONTIG NT_187438.1 3253 correct 25619550 25624151 1 4602 NC_060943.1 NT_187443.1 99.98 True fake: scaffold gap size wrong estimation (local) 25634786 25637606 14626 17445 NC_060943.1 NT_187443.1 99.93 True translocation 50472780 50494343 43269 17448 NC_060929.1 NT_187443.1 99.29 True translocation, scaffold gap is present 25675278 25681396 54171 60288 NC_060943.1 NT_187443.1 99.74 True fake: scaffold gap size wrong estimation (local) 25682377 25699809 64205 81638 NC_060943.1 NT_187443.1 99.91 True fake: scaffold gap size wrong estimation (local) 25700097 25701121 83586 84609 NC_060943.1 NT_187443.1 99.8 True relocation, scaffold gap is present, inconsistency = 33191 25736283 25741004 86580 91299 NC_060943.1 NT_187443.1 99.85 True CONTIG NT_187443.1 91309 misassembled 9412380 9419425 1 7046 NC_060938.1 NT_187449.1 99.74 True CONTIG NT_187449.1 7046 correct 12964446 12995306 1 31033 NC_060937.1 NT_187450.1 99.24 True CONTIG NT_187450.1 31033 correct 14213329 14214659 1 1331 NC_060939.1 NT_187451.1 99.66 True translocation 10142094 10143822 3061 1332 NC_060945.1 NT_187451.1 96.88 True indel: indel (> 5bp) 10139340 10142093 5895 3147 NC_060945.1 NT_187451.1 96.11 True translocation, scaffold gap is present 14218404 14234365 9884 25848 NC_060939.1 NT_187451.1 99.66 True fake: scaffold gap size wrong estimation (local) 14234955 14237691 27104 29840 NC_060939.1 NT_187451.1 99.71 True local misassembly 14237692 14241655 31716 35680 NC_060939.1 NT_187451.1 99.77 True fake: scaffold gap size wrong estimation (local) 14243752 14245273 37764 39285 NC_060939.1 NT_187451.1 99.8 True fake: scaffold gap size wrong estimation (local) 14246259 14247373 41891 43000 NC_060939.1 NT_187451.1 97.94 True translocation 13115205 13116020 44474 43660 NC_060937.1 NT_187451.1 97.67 True CONTIG NT_187451.1 44474 misassembled 11973628 11978311 4684 1 NC_060946.1 NT_187452.1 99.83 True CONTIG NT_187452.1 4685 correct 8537394 8541906 4513 1 NC_060945.1 NT_187453.1 99.96 True CONTIG NT_187453.1 4513 correct 12958860 12965347 5 6492 NC_060937.1 NT_187454.1 99.85 True CONTIG NT_187454.1 6504 correct 13123471 13129613 1 6142 NC_060937.1 NT_187455.1 99.85 True CONTIG NT_187455.1 6158 correct 8857199 8860239 1 3041 NC_060945.1 NT_187456.1 100.0 True CONTIG NT_187456.1 3041 correct 13118343 13124140 5796 1 NC_060937.1 NT_187457.1 99.76 True CONTIG NT_187457.1 5796 correct 50629819 50633350 1 3530 NC_060929.1 NT_187469.1 99.58 True CONTIG NT_187469.1 3530 correct 25248689 25256981 8304 11 NC_060943.1 NT_187470.1 99.82 True CONTIG NT_187470.1 8320 correct 44961812 44966026 1 4215 NC_060933.1 NT_187488.1 99.57 True CONTIG NT_187488.1 4215 correct 10065138 10073129 7992 1 NC_060938.1 NT_187495.1 99.89 True CONTIG NT_187495.1 7992 correct 16662070 16669713 7642 1 NC_060939.1 NT_187496.1 99.74 True CONTIG NT_187496.1 7642 correct 5481738 5664546 182896 1 NC_060937.1 NT_113901.1 98.76 True CONTIG NT_113901.1 182896 correct 2528866 2708526 1 179198 NC_060945.1 NT_167213.1 99.72 True CONTIG NT_167213.1 179198 correct 1998156 2160207 1 161802 NC_060938.1 NT_167214.1 98.78 True CONTIG NT_167214.1 161802 correct 4108798 4289633 1 179693 NC_060946.1 NT_167218.1 99.12 True CONTIG NT_167218.1 179693 correct 4168029 4271857 1 103838 NC_060946.1 NT_187497.1 99.69 True translocation, scaffold gap is present 2515232 2520749 104658 110175 NC_060945.1 NT_187497.1 99.93 True fake: scaffold gap size wrong estimation (local) 2520939 2528922 110464 118449 NC_060945.1 NT_187497.1 99.91 True fake: scaffold gap size wrong estimation (local) 2529042 2536640 118608 126158 NC_060945.1 NT_187497.1 99.34 True fake: not a misassembly (possible transposable element) 4292248 4293849 126185 127786 NC_060946.1 NT_187497.1 100.0 True fake: not a misassembly (possible transposable element) 2538241 2567388 128284 157432 NC_060945.1 NT_187497.1 99.97 True CONTIG NT_187497.1 157432 misassembled 11606731 11621738 15008 1 NC_060938.1 NT_167220.1 99.16 True CONTIG NT_167220.1 15008 correct 11929521 12093890 164239 1 NC_060945.1 NT_167208.1 98.74 True CONTIG NT_167208.1 164239 correct 10466515 10620049 153526 1 NC_060937.1 NT_187498.1 99.95 True fake: not a misassembly (possible transposable element) 10464997 10466514 153527 155044 NC_060937.1 NT_187498.1 99.8 True fake: not a misassembly (possible transposable element) 10409601 10464996 210658 155045 NC_060937.1 NT_187498.1 99.39 True CONTIG NT_187498.1 210658 correct 222165 233199 11031 1 NC_060939.1 NT_187499.1 99.12 True indel: indel (> 5bp) 220920 221972 12084 11032 NC_060939.1 NT_187499.1 97.63 True indel: indel (> 5bp) 220216 220855 12724 12085 NC_060939.1 NT_187499.1 97.34 True local misassembly 218556 219959 14128 12725 NC_060939.1 NT_187499.1 97.58 True local misassembly 197422 216507 33218 14129 NC_060939.1 NT_187499.1 99.6 True translocation 5773550 5775932 33219 35601 NC_060938.1 NT_187499.1 96.63 True indel: indel (> 5bp) 5775971 5787449 35602 47126 NC_060938.1 NT_187499.1 97.45 True translocation 76903701 76906853 47425 50566 NC_060933.1 NT_187499.1 95.43 True indel: indel (> 5bp) 76906896 76915973 50567 59632 NC_060933.1 NT_187499.1 96.46 True translocation 5320551 5323447 95783 98677 NC_060937.1 NT_187499.1 96.31 True local misassembly 5323759 5325601 98678 100518 NC_060937.1 NT_187499.1 95.98 True local misassembly 5326385 5330384 101147 105138 NC_060937.1 NT_187499.1 95.62 True translocation 96312 98685 107561 105203 NC_060939.1 NT_187499.1 98.19 True indel: indel (> 5bp) 94980 96311 108917 107586 NC_060939.1 NT_187499.1 98.2 True indel: indel (> 5bp) 93841 94979 110203 109065 NC_060939.1 NT_187499.1 97.89 True local misassembly 88584 93306 115167 110450 NC_060939.1 NT_187499.1 98.31 True translocation 71791 75463 118833 115168 NC_060945.1 NT_187499.1 98.61 True indel: indel (> 5bp) 22121 71750 168463 118834 NC_060945.1 NT_187499.1 99.49 True CONTIG NT_187499.1 168472 misassembled 150528130 150557720 1 29591 NC_060933.1 NT_187500.1 99.99 True relocation, inconsistency = 39067 150596788 150609087 29592 41891 NC_060933.1 NT_187500.1 99.98 True CONTIG NT_187500.1 41891 misassembled 6429996 6451794 1 21800 NC_060946.1 NT_187501.1 99.78 True translocation 3480843 3525522 21801 66486 NC_060938.1 NT_187501.1 99.29 True CONTIG NT_187501.1 66486 misassembled 44854404 44965645 1 110845 NC_060933.1 NT_187502.1 99.14 True local misassembly 44966466 44970890 113530 117947 NC_060933.1 NT_187502.1 95.25 True local misassembly 44973462 44974789 121702 123030 NC_060933.1 NT_187502.1 95.79 True local misassembly 44975132 44977003 123031 124900 NC_060933.1 NT_187502.1 97.06 True local misassembly 44977004 44979893 125239 128128 NC_060933.1 NT_187502.1 97.54 True local misassembly 44979894 44983285 128983 132376 NC_060933.1 NT_187502.1 97.53 True indel: indel (> 5bp) 44983286 44985940 132551 135208 NC_060933.1 NT_187502.1 95.56 True local misassembly 44985941 44986490 135723 136272 NC_060933.1 NT_187502.1 96.73 True local misassembly 44986491 44988999 136615 139124 NC_060933.1 NT_187502.1 95.26 True local misassembly 44989514 44993250 139125 142863 NC_060933.1 NT_187502.1 97.22 True local misassembly 44996887 45001554 144789 149455 NC_060933.1 NT_187502.1 98.22 True local misassembly 45002741 45009845 149456 156562 NC_060933.1 NT_187502.1 98.76 True local misassembly 45009846 45011798 157241 159193 NC_060933.1 NT_187502.1 99.8 True local misassembly 45011799 45012951 159874 161026 NC_060933.1 NT_187502.1 99.83 True local misassembly 45013132 45014032 163413 164315 NC_060933.1 NT_187502.1 96.68 True local misassembly 45014033 45018599 164658 169228 NC_060933.1 NT_187502.1 98.82 True local misassembly 45021148 45021796 169229 169877 NC_060933.1 NT_187502.1 98.46 True local misassembly 45022989 45030779 169878 177680 NC_060933.1 NT_187502.1 98.53 True local misassembly 45033572 45035487 180127 182048 NC_060933.1 NT_187502.1 96.05 True local misassembly 45039197 45041027 184736 186568 NC_060933.1 NT_187502.1 96.86 True local misassembly 45046128 45049029 186569 189481 NC_060933.1 NT_187502.1 97.22 True relocation, inconsistency = 1484184 46537134 46541302 193402 197563 NC_060933.1 NT_187502.1 97.1 True relocation, inconsistency = 761678 47302981 47304124 197564 198704 NC_060933.1 NT_187502.1 95.49 True CONTIG NT_187502.1 198735 misassembled 172022495 172112542 1 93321 NC_060930.1 NT_187503.1 96.32 True CONTIG NT_187503.1 93321 correct 11325960 11484605 158759 1 NC_060946.1 NT_187504.1 99.65 True CONTIG NT_187504.1 158759 correct 7152950 7302243 148850 1 NC_060938.1 NT_187505.1 99.25 True CONTIG NT_187505.1 148850 correct 179107 332961 1 150742 NC_060939.1 NT_187506.1 96.3 True CONTIG NT_187506.1 150742 correct 9224093 9286971 62944 1 NC_060945.1 NT_187508.1 99.09 True CONTIG NT_187508.1 62944 correct 6960840 7000924 40164 5 NC_060938.1 NT_187509.1 95.92 True CONTIG NT_187509.1 40191 correct 193048906 193063965 15055 1 NC_060928.1 NT_187510.1 99.76 True local misassembly 193046914 193047513 17471 16872 NC_060928.1 NT_187510.1 96.83 True local misassembly 193046144 193046913 19313 18544 NC_060928.1 NT_187510.1 99.74 True indel: indel (> 5bp) 193042010 193046086 23389 19314 NC_060928.1 NT_187510.1 99.88 True indel: indel (> 5bp) 193037092 193042009 28329 23420 NC_060928.1 NT_187510.1 99.33 True indel: indel (> 5bp) 193028629 193037018 36723 28330 NC_060928.1 NT_187510.1 99.71 True CONTIG NT_187510.1 36723 correct 38897286 38976938 79590 1 NC_060934.1 NT_187511.1 99.66 True CONTIG NT_187511.1 79590 correct 14266227 14267720 1494 1 NC_060939.1 NT_187512.1 99.8 True local misassembly 14256838 14265541 10199 1495 NC_060939.1 NT_187512.1 99.33 True fake: scaffold gap size wrong estimation (local) 14250649 14253158 16789 14265 NC_060939.1 NT_187512.1 98.81 True fake: scaffold gap size wrong estimation (local) 14237704 14245882 28172 20006 NC_060939.1 NT_187512.1 99.49 True local misassembly 14223535 14237703 44211 30048 NC_060939.1 NT_187512.1 99.6 True fake: scaffold gap size wrong estimation (local) 14214840 14222057 53572 46351 NC_060939.1 NT_187512.1 99.67 True local misassembly 14202004 14214839 71251 58420 NC_060939.1 NT_187512.1 99.69 True CONTIG NT_187512.1 71251 correct 166650 286302 116547 1 NC_060939.1 NT_167209.1 95.36 True translocation 205176 227067 137718 116548 NC_060946.1 NT_167209.1 98.11 True CONTIG NT_167209.1 137718 misassembled 1663880 1851100 186739 1 NC_060939.1 NT_187513.1 99.71 True CONTIG NT_187513.1 186739 correct 6422040 6424271 22296 20074 NC_060945.1 NT_167211.2 96.69 True relocation, inconsistency = -9787 6421953 6424271 32156 29852 NC_060945.1 NT_167211.2 96.38 True indel: indel (> 5bp) 6420150 6421924 33940 32157 NC_060945.1 NT_167211.2 96.24 True indel: indel (<= 5bp) 6419186 6420034 34911 34057 NC_060945.1 NT_167211.2 95.2 True indel: indel (> 5bp) 6415192 6418991 38806 34971 NC_060945.1 NT_167211.2 95.99 True indel: indel (> 5bp) 6411510 6414668 42359 39204 NC_060945.1 NT_167211.2 95.98 True indel: indel (> 5bp) 6407236 6411075 46648 42824 NC_060945.1 NT_167211.2 96.02 True indel: indel (> 5bp) 6406264 6407235 47650 46679 NC_060945.1 NT_167211.2 95.78 True relocation, inconsistency = -15916 6404697 6406185 65118 63645 NC_060945.1 NT_167211.2 96.84 True indel: indel (> 5bp) 6401559 6404641 68195 65119 NC_060945.1 NT_167211.2 96.89 True indel: indel (> 5bp) 6401022 6401558 68772 68226 NC_060945.1 NT_167211.2 96.89 True local misassembly 6397989 6401021 72125 69103 NC_060945.1 NT_167211.2 96.21 True indel: indel (> 5bp) 6397159 6397988 73140 72311 NC_060945.1 NT_167211.2 96.99 True local misassembly 6394700 6395571 75436 74545 NC_060945.1 NT_167211.2 95.63 True indel: indel (> 5bp) 6393441 6394559 76560 75437 NC_060945.1 NT_167211.2 97.51 True local misassembly 6390698 6392802 80023 77894 NC_060945.1 NT_167211.2 95.63 True local misassembly 6387279 6390697 83856 80464 NC_060945.1 NT_167211.2 95.82 True indel: indel (> 5bp) 6386180 6387278 84965 83887 NC_060945.1 NT_167211.2 96.63 True local misassembly 6384087 6385607 87200 85698 NC_060945.1 NT_167211.2 96.52 True indel: indel (> 5bp) 6368152 6384086 103181 87226 NC_060945.1 NT_167211.2 98.5 True indel: indel (> 5bp) 6350239 6368151 121115 103227 NC_060945.1 NT_167211.2 98.19 True indel: indel (> 5bp) 6331506 6350202 139820 121116 NC_060945.1 NT_167211.2 98.64 True local misassembly 6323902 6330616 146547 139821 NC_060945.1 NT_167211.2 97.68 True local misassembly 6320383 6323325 149863 146920 NC_060945.1 NT_167211.2 98.0 True local misassembly 6314802 6316477 151538 149864 NC_060945.1 NT_167211.2 98.45 True indel: indel (> 5bp) 6313591 6314801 152817 151607 NC_060945.1 NT_167211.2 97.52 True indel: indel (> 5bp) 6312138 6313590 154338 152887 NC_060945.1 NT_167211.2 98.0 True indel: indel (> 5bp) 6307996 6312069 158413 154339 NC_060945.1 NT_167211.2 98.13 True indel: indel (> 5bp) 6303193 6307926 163154 158414 NC_060945.1 NT_167211.2 98.04 True indel: indel (> 5bp) 6300456 6302613 165752 163597 NC_060945.1 NT_167211.2 98.24 True local misassembly 6298301 6300455 168104 165955 NC_060945.1 NT_167211.2 98.19 True local misassembly 6289588 6298095 176608 168105 NC_060945.1 NT_167211.2 98.08 True CONTIG NT_167211.2 176608 misassembled 4778404 4939556 1 161147 NC_060939.1 NT_113889.1 99.98 True CONTIG NT_113889.1 161147 correct 12362503 12622991 1 258447 NC_060925.1 NW_012132914.1 98.72 True relocation, inconsistency = -12522 12610470 12641557 289526 258448 NC_060925.1 NW_012132914.1 99.81 True indel: indel (> 5bp) 12562746 12610415 337194 289527 NC_060925.1 NW_012132914.1 99.65 True indel: indel (> 5bp) 12554835 12562745 345206 337297 NC_060925.1 NW_012132914.1 99.37 True indel: indel (> 5bp) 12459439 12554806 440600 345207 NC_060925.1 NW_012132914.1 99.55 True indel: indel (> 5bp) 12446318 12459438 453763 440627 NC_060925.1 NW_012132914.1 99.35 True indel: indel (> 5bp) 12432967 12446317 467143 453793 NC_060925.1 NW_012132914.1 99.46 True CONTIG NW_012132914.1 467143 misassembled 12521129 12622991 1 99723 NC_060925.1 NW_015495298.1 97.32 True relocation, inconsistency = -12522 12610470 12641557 130802 99724 NC_060925.1 NW_015495298.1 99.81 True indel: indel (> 5bp) 12562746 12610415 178458 130803 NC_060925.1 NW_015495298.1 99.59 True indel: indel (> 5bp) 12554748 12562745 186529 178561 NC_060925.1 NW_015495298.1 98.79 True relocation, inconsistency = 29819 12521129 12524811 190332 186647 NC_060925.1 NW_015495298.1 98.26 True indel: indel (> 5bp) 12505921 12521128 205604 190391 NC_060925.1 NW_015495298.1 98.86 True indel: indel (> 5bp) 12459439 12505795 252116 205755 NC_060925.1 NW_015495298.1 99.54 True indel: indel (> 5bp) 12446318 12459438 265279 252143 NC_060925.1 NW_015495298.1 99.35 True indel: indel (> 5bp) 12432967 12446317 278659 265309 NC_060925.1 NW_015495298.1 99.46 True CONTIG NW_015495298.1 278659 misassembled 15637212 16081350 1 434615 NC_060925.1 NW_025791756.1 97.52 True relocation, inconsistency = 588708 16670059 16764471 528518 434616 NC_060925.1 NW_025791756.1 98.19 True relocation, inconsistency = 229420 16408047 16440638 561098 528519 NC_060925.1 NW_025791756.1 99.53 True indel: indel (> 5bp) 16396441 16408046 572690 561120 NC_060925.1 NW_025791756.1 99.21 True relocation, inconsistency = -104097063 120485420 120491983 580777 574211 NC_060925.1 NW_025791756.1 96.17 True relocation, inconsistency = 103825107 16649306 16660312 591776 580778 NC_060925.1 NW_025791756.1 98.99 True relocation, inconsistency = -103834536 120474400 120475207 601218 600411 NC_060925.1 NW_025791756.1 97.33 True relocation, inconsistency = 103825094 16519646 16649305 730864 601219 NC_060925.1 NW_025791756.1 99.14 True indel: indel (> 5bp) 16510290 16519645 740248 730895 NC_060925.1 NW_025791756.1 99.57 True indel: indel (> 5bp) 16470443 16510289 780116 740275 NC_060925.1 NW_025791756.1 99.58 True indel: indel (> 5bp) 16467887 16470402 782644 780117 NC_060925.1 NW_025791756.1 97.55 True local misassembly 16409623 16467886 842656 784397 NC_060925.1 NW_025791756.1 99.25 True indel: indel (> 5bp) 16380782 16409601 871468 842657 NC_060925.1 NW_025791756.1 99.8 True indel: indel (> 5bp) 16226953 16380753 1025244 871469 NC_060925.1 NW_025791756.1 99.42 True indel: indel (> 5bp) 16220050 16226920 1032114 1025245 NC_060925.1 NW_025791756.1 99.44 True relocation, inconsistency = -131628831 147839477 147848880 1041532 1032115 NC_060925.1 NW_025791756.1 97.12 True relocation, inconsistency = 131622554 16182472 16216922 1076025 1041533 NC_060925.1 NW_025791756.1 99.34 True relocation, inconsistency = 23572 16154839 16158899 1080087 1076026 NC_060925.1 NW_025791756.1 98.69 True relocation, inconsistency = -129024739 145169722 145179577 1089976 1080088 NC_060925.1 NW_025791756.1 97.15 True relocation, inconsistency = 128770589 16396441 16398674 1090435 1092668 NC_060925.1 NW_025791756.1 98.34 True local misassembly 16401879 16417000 1092669 1107759 NC_060925.1 NW_025791756.1 99.2 True indel: indel (> 5bp) 16417001 16451678 1107798 1142502 NC_060925.1 NW_025791756.1 99.17 True relocation, inconsistency = 7339 16459018 16469955 1142503 1153428 NC_060925.1 NW_025791756.1 98.91 True relocation, inconsistency = 88159 16558115 16562779 1153429 1158100 NC_060925.1 NW_025791756.1 98.74 True indel: indel (> 5bp) 16562823 16649454 1158101 1244798 NC_060925.1 NW_025791756.1 99.43 True relocation, inconsistency = -9408 16649455 16967958 1254207 1572686 NC_060925.1 NW_025791756.1 99.8 True CONTIG NW_025791756.1 1572686 misassembled 16967959 17274345 1 305542 NC_060925.1 NW_011332688.1 99.25 True CONTIG NW_011332688.1 305542 correct 23063132 23414538 1 349938 NC_060925.1 NW_014040926.1 99.46 True CONTIG NW_014040926.1 349938 correct 26350329 26516543 1 166200 NC_060925.1 NW_009646195.1 99.91 True CONTIG NW_009646195.1 166200 correct 28048187 28208596 1 166136 NC_060925.1 NW_018654706.1 96.46 True CONTIG NW_018654706.1 166136 correct 29387708 29432871 1 44955 NC_060925.1 NW_019805487.1 99.5 True CONTIG NW_019805487.1 44955 correct 41119770 41306799 1 186494 NC_060925.1 NW_009646194.1 99.58 True CONTIG NW_009646194.1 186494 correct 72166675 72179591 1 12907 NC_060925.1 NW_018654707.1 99.65 True relocation, inconsistency = -54474 72179592 72181481 67382 69271 NC_060925.1 NW_018654707.1 99.52 True indel: indel (> 5bp) 72181482 72252563 69294 140355 NC_060925.1 NW_018654707.1 99.85 True CONTIG NW_018654707.1 140355 misassembled 103946536 104087556 1 141019 NC_060925.1 NW_014040925.1 99.83 True CONTIG NW_014040925.1 141019 correct 108025308 108572406 1 551020 NC_060925.1 NW_017852928.1 98.95 True CONTIG NW_017852928.1 551020 correct 112921980 113044011 1 122022 NC_060925.1 NW_009646196.1 99.91 True CONTIG NW_009646196.1 122022 correct 120395573 120844385 1 446020 NC_060925.1 NW_025791753.1 97.08 True indel: indel (> 5bp) 120844547 120915644 446238 516764 NC_060925.1 NW_025791753.1 99.05 True CONTIG NW_025791753.1 516764 correct 155580020 155789763 1 211934 NC_060925.1 NW_025791758.1 98.76 True CONTIG NW_025791758.1 211934 correct 158385208 158635713 1 250447 NC_060925.1 NW_025791759.1 99.81 True CONTIG NW_025791759.1 250447 correct 195496373 196191736 1 695023 NC_060925.1 NW_025791754.1 99.73 True fake: scaffold gap size wrong estimation (local) 196194602 196344134 697915 847441 NC_060925.1 NW_025791754.1 99.94 True CONTIG NW_025791754.1 847441 correct 209458945 209918832 1 460100 NC_060925.1 NW_011332687.1 99.73 True CONTIG NW_011332687.1 460100 correct 227597315 227745308 1 147984 NC_060925.1 NW_018654708.1 99.94 True indel: indel (> 5bp) 227745309 227747521 148011 150224 NC_060925.1 NW_018654708.1 99.46 True indel: indel (> 5bp) 227747522 227750769 150251 153504 NC_060925.1 NW_018654708.1 99.45 True relocation, inconsistency = 60392 227811162 227853537 153505 195919 NC_060925.1 NW_018654708.1 99.37 True relocation, inconsistency = 71631 227925169 227926503 195920 197247 NC_060925.1 NW_018654708.1 99.18 True relocation, inconsistency = 35809 227962313 227976917 197248 211852 NC_060925.1 NW_018654708.1 99.32 True relocation, inconsistency = 35836 228012754 228130938 211853 330031 NC_060925.1 NW_018654708.1 99.8 True CONTIG NW_018654708.1 330031 misassembled 234751920 234964484 1 212205 NC_060925.1 NW_014040927.1 99.55 True CONTIG NW_014040927.1 212205 correct 246666689 246880624 1 210426 NC_060925.1 NW_025791757.1 97.83 True CONTIG NW_025791757.1 210426 correct 247778556 247788171 1 9609 NC_060925.1 NW_025791755.1 99.53 True indel: indel (> 5bp) 247788172 247809501 9694 31028 NC_060925.1 NW_025791755.1 99.54 True local misassembly 247809664 247829219 32619 52169 NC_060925.1 NW_025791755.1 99.48 True local misassembly 247830189 247833752 52521 56100 NC_060925.1 NW_025791755.1 99.33 True relocation, inconsistency = 8427 247842180 247842943 56101 56864 NC_060925.1 NW_025791755.1 95.94 True relocation, inconsistency = 10600 247853544 247877897 56865 81208 NC_060925.1 NW_025791755.1 99.59 True indel: indel (> 5bp) 247877898 247889495 81254 92845 NC_060925.1 NW_025791755.1 99.1 True indel: indel (> 5bp) 247889559 247924224 92846 127483 NC_060925.1 NW_025791755.1 99.32 True indel: indel (> 5bp) 247924225 247928131 127508 131430 NC_060925.1 NW_025791755.1 98.39 True indel: indel (> 5bp) 247928170 248113540 131431 316802 NC_060925.1 NW_025791755.1 99.83 True indel: indel (> 5bp) 248113541 248115066 316863 318388 NC_060925.1 NW_025791755.1 100.0 True indel: indel (> 5bp) 248115067 248131718 318508 335159 NC_060925.1 NW_025791755.1 99.73 True CONTIG NW_025791755.1 335159 misassembled 16136985 16218835 1 84043 NC_060926.1 NW_021159988.1 96.76 True CONTIG NW_021159988.1 84043 correct 20982528 21227471 1 244725 NC_060926.1 NW_025791767.1 99.6 True CONTIG NW_025791767.1 244725 correct 21715480 21889812 1 174385 NC_060926.1 NW_025791768.1 99.89 True CONTIG NW_025791768.1 174385 correct 73343526 73828097 1 489404 NC_060926.1 NW_025791766.1 98.85 True CONTIG NW_025791766.1 489404 correct 85075705 85360742 1 284971 NC_060926.1 NW_025791763.1 99.78 True CONTIG NW_025791763.1 284971 correct 88900174 89375321 1 474678 NC_060926.1 NW_012132915.1 99.75 True local misassembly 89377786 89380808 478223 481245 NC_060926.1 NW_012132915.1 99.83 True CONTIG NW_012132915.1 481245 correct 95744372 96003454 1 259035 NC_060926.1 NW_025791760.1 99.8 True relocation, inconsistency = -82677 95920778 96086428 424703 259036 NC_060926.1 NW_025791760.1 99.71 True relocation, inconsistency = 82618 96169047 96176126 424704 431782 NC_060926.1 NW_025791760.1 99.43 True CONTIG NW_025791760.1 431782 misassembled 97531910 97854564 1 322634 NC_060926.1 NW_025791765.1 99.77 True local misassembly 97867083 98487270 335153 955087 NC_060926.1 NW_025791765.1 99.78 True CONTIG NW_025791765.1 955087 correct 126626189 126798842 1 181658 NC_060926.1 NW_018654709.1 95.01 True CONTIG NW_018654709.1 181658 correct 130257382 130757933 1 500581 NC_060926.1 NW_025791762.1 99.86 True CONTIG NW_025791762.1 500581 correct 172047226 172582727 1 535251 NC_060926.1 NW_025791761.1 99.72 True CONTIG NW_025791761.1 535251 correct 189383925 189504264 1 120381 NC_060926.1 NW_025791764.1 99.82 True CONTIG NW_025791764.1 120381 correct 206372940 206903535 1 535088 NC_060926.1 NW_015495299.1 98.88 True CONTIG NW_015495299.1 535088 correct 208482098 208622084 1 140361 NC_060926.1 NW_018654710.1 99.5 True CONTIG NW_018654710.1 140361 correct 233542035 233664083 1 121832 NC_060926.1 NW_011332690.1 99.38 True local misassembly 233664864 233908689 121945 365499 NC_060926.1 NW_011332690.1 99.65 True CONTIG NW_011332690.1 365499 correct 239263387 239360793 1 97374 NC_060926.1 NW_021159987.1 99.81 True local misassembly 239361979 239409608 98049 145975 NC_060926.1 NW_021159987.1 99.14 True CONTIG NW_021159987.1 145975 correct 240188128 240398326 1 208149 NC_060926.1 NW_011332689.1 98.21 True CONTIG NW_011332689.1 208149 correct 16688687 16930312 1 241532 NC_060927.1 NW_017363813.1 99.7 True indel: indel (> 5bp) 16930458 17101374 241684 411654 NC_060927.1 NW_017363813.1 99.28 True CONTIG NW_017363813.1 411654 correct 32631289 32931059 1 301310 NC_060927.1 NW_025791770.1 99.34 True CONTIG NW_025791770.1 301310 correct 37431700 37907382 1 475876 NC_060927.1 NW_025791771.1 99.82 True CONTIG NW_025791771.1 475876 correct 44490459 44941545 1 451168 NC_060927.1 NW_009646197.1 99.87 True CONTIG NW_009646197.1 451168 correct 66067232 66441372 1 373699 NC_060927.1 NW_012132916.1 99.67 True CONTIG NW_012132916.1 373699 correct 72365952 72782276 1 415308 NC_060927.1 NW_011332691.1 99.64 True CONTIG NW_011332691.1 415308 correct 75405709 75588235 1 181099 NC_060927.1 NW_021159989.1 98.61 True local misassembly 75588310 75621970 181543 215443 NC_060927.1 NW_021159989.1 96.88 True CONTIG NW_021159989.1 215443 correct 84849860 85025642 1 175849 NC_060927.1 NW_018654711.1 99.77 True CONTIG NW_018654711.1 175849 correct 90618718 90784261 1 165718 NC_060927.1 NW_012132917.1 98.2 True CONTIG NW_012132917.1 165718 correct 91444265 91446435 1 2171 NC_060927.1 NW_009646198.1 98.94 True fake: scaffold gap size wrong estimation (local) 91450233 91455607 12459 17659 NC_060927.1 NW_009646198.1 95.07 True fake: scaffold gap size wrong estimation (local) 91463470 91467388 29273 33192 NC_060927.1 NW_009646198.1 98.55 True local misassembly 91467729 91468989 33193 34453 NC_060927.1 NW_009646198.1 98.81 True fake: scaffold gap size wrong estimation (extensive) 91478965 91750626 37100 305347 NC_060927.1 NW_009646198.1 98.1 True relocation, inconsistency = 7133 91757760 91758389 305348 305978 NC_060927.1 NW_009646198.1 96.81 True CONTIG NW_009646198.1 305979 misassembled 97594691 97700223 1 105527 NC_060927.1 NW_019805491.1 99.9 True CONTIG NW_019805491.1 105527 correct 114837826 114866358 1 28537 NC_060927.1 NW_019805492.1 99.96 True indel: indel (> 5bp) 114866359 114885511 28567 47712 NC_060927.1 NW_019805492.1 99.87 True relocation, inconsistency = -9499 114885512 114904422 57212 76097 NC_060927.1 NW_019805492.1 99.75 True indel: indel (> 5bp) 114904452 115023380 76098 195063 NC_060927.1 NW_019805492.1 99.88 True CONTIG NW_019805492.1 195063 misassembled 130872375 131175372 1 302885 NC_060927.1 NW_019805490.1 99.91 True CONTIG NW_019805490.1 302885 correct 178120769 178318609 1 197752 NC_060927.1 NW_019805489.1 99.88 True CONTIG NW_019805489.1 197752 correct 178910451 178976757 1 66394 NC_060927.1 NW_019805488.1 99.72 True local misassembly 178977274 179076042 66419 164041 NC_060927.1 NW_019805488.1 98.63 True CONTIG NW_019805488.1 164041 correct 190007742 190477083 1 469342 NC_060927.1 NW_025791769.1 99.76 True CONTIG NW_025791769.1 469342 correct 1420041 1658073 1 235734 NC_060928.1 NW_021159990.1 97.91 True CONTIG NW_021159990.1 235734 correct 8714490 8890776 1 176674 NC_060928.1 NW_021159993.1 99.36 True CONTIG NW_021159993.1 176674 correct 14913235 15000808 1 90922 NC_060928.1 NW_013171799.1 96.11 True CONTIG NW_013171799.1 90922 correct 22659988 22865669 1 205691 NC_060928.1 NW_025791774.1 99.91 True CONTIG NW_025791774.1 205691 correct 31776853 31830326 1 53476 NC_060928.1 NW_021159992.1 99.69 True CONTIG NW_021159992.1 53476 correct 32785789 32911223 1 125549 NC_060928.1 NW_021159994.1 99.7 True CONTIG NW_021159994.1 125549 correct 49041347 49245434 1 211888 NC_060928.1 NW_021159991.1 95.7 True relocation, inconsistency = -40572 49245424 49282901 249374 211889 NC_060928.1 NW_021159991.1 99.91 True inversion 49282913 49374607 249375 341066 NC_060928.1 NW_021159991.1 99.96 True CONTIG NW_021159991.1 341066 misassembled 62158458 62434791 1 276109 NC_060928.1 NW_021159995.1 99.71 True CONTIG NW_021159995.1 276109 correct 69318551 69483878 1 163749 NC_060928.1 NW_013171800.1 98.83 True CONTIG NW_013171800.1 163749 correct 73294659 73531239 1 236512 NC_060928.1 NW_013171801.1 99.83 True CONTIG NW_013171801.1 236512 correct 154387148 154695865 1 308682 NC_060928.1 NW_025791772.1 99.91 True CONTIG NW_025791772.1 308682 correct 157403890 157824805 9 420655 NC_060928.1 NW_017363814.1 99.77 True CONTIG NW_017363814.1 420675 correct 192350259 192462620 1 113338 NC_060928.1 NW_025791773.1 98.77 True CONTIG NW_025791773.1 113364 correct 193272051 193479035 1 203632 NC_060928.1 NW_015495301.1 97.86 True CONTIG NW_015495301.1 205407 correct 193272051 193345718 1 73663 NC_060928.1 NW_015495300.1 99.97 True local misassembly 193349185 193365026 73907 89750 NC_060928.1 NW_015495300.1 99.89 True local misassembly 193365339 193401270 89751 125652 NC_060928.1 NW_015495300.1 99.61 True indel: indel (> 5bp) 193401271 193417044 125825 141594 NC_060928.1 NW_015495300.1 99.72 True indel: indel (> 5bp) 193417045 193417910 141656 142520 NC_060928.1 NW_015495300.1 99.77 True indel: indel (> 5bp) 193418052 193452244 142521 176777 NC_060928.1 NW_015495300.1 99.61 True relocation, inconsistency = 65953 193518198 193564464 176778 223110 NC_060928.1 NW_015495300.1 99.49 True indel: indel (> 5bp) 193564651 193565215 223111 223679 NC_060928.1 NW_015495300.1 95.25 True local misassembly 193565586 193570259 223680 228356 NC_060928.1 NW_015495300.1 98.57 True local misassembly 193570599 193572631 228357 230389 NC_060928.1 NW_015495300.1 96.56 True CONTIG NW_015495300.1 230434 misassembled 70158995 70203307 2 44356 NC_060929.1 NW_025791777.1 99.81 True local misassembly 70203648 70254221 44407 94974 NC_060929.1 NW_025791777.1 99.81 True local misassembly 70254222 70288766 95427 129914 NC_060929.1 NW_025791777.1 99.63 True local misassembly 70289458 70451143 130359 292107 NC_060929.1 NW_025791777.1 99.85 True local misassembly 70451144 70479799 292611 321249 NC_060929.1 NW_025791777.1 99.59 True local misassembly 70479800 70500309 323686 344193 NC_060929.1 NW_025791777.1 99.65 True indel: indel (> 5bp) 70500412 70558474 344305 402349 NC_060929.1 NW_025791777.1 99.83 True relocation, inconsistency = -23584 70558475 70560477 425934 427935 NC_060929.1 NW_025791777.1 99.6 True local misassembly 70560940 70597079 428026 464169 NC_060929.1 NW_025791777.1 99.86 True local misassembly 70597395 70598236 464170 465011 NC_060929.1 NW_025791777.1 99.76 True relocation, scaffold gap is present, inconsistency = -110945 70727189 70747825 704909 725566 NC_060929.1 NW_025791777.1 99.4 True indel: indel (> 5bp) 70747850 70772140 725567 749877 NC_060929.1 NW_025791777.1 99.5 True relocation, inconsistency = 659970 71452722 71461873 779645 770489 NC_060929.1 NW_025791777.1 99.51 True indel: indel (> 5bp) 71350153 71452721 882259 779675 NC_060929.1 NW_025791777.1 99.81 True indel: indel (> 5bp) 71248087 71350127 984275 882260 NC_060929.1 NW_025791777.1 99.77 True relocation, inconsistency = 527498 70700172 70720588 1004667 984276 NC_060929.1 NW_025791777.1 99.54 True relocation, inconsistency = 250729 70971318 71090512 1004668 1123831 NC_060929.1 NW_025791777.1 99.83 True local misassembly 71090513 71126698 1124073 1160249 NC_060929.1 NW_025791777.1 99.82 True local misassembly 71127014 71129912 1160250 1163150 NC_060929.1 NW_025791777.1 99.38 True indel: indel (> 5bp) 71129913 71130856 1163173 1164120 NC_060929.1 NW_025791777.1 98.21 True indel: indel (> 5bp) 71130857 71234001 1164166 1267310 NC_060929.1 NW_025791777.1 99.87 True relocation, inconsistency = 452621 71686623 71695154 1275841 1267311 NC_060929.1 NW_025791777.1 99.3 True indel: indel (> 5bp) 71675644 71686598 1286784 1275842 NC_060929.1 NW_025791777.1 99.38 True local misassembly 71552103 71674833 1409415 1286785 NC_060929.1 NW_025791777.1 99.59 True relocation, inconsistency = 22708 71487197 71529394 1451638 1409416 NC_060929.1 NW_025791777.1 99.73 True indel: indel (> 5bp) 71350153 71487196 1588723 1451672 NC_060929.1 NW_025791777.1 99.88 True indel: indel (> 5bp) 71292700 71350127 1646153 1588724 NC_060929.1 NW_025791777.1 99.87 True indel: indel (> 5bp) 71233920 71292699 1704876 1646179 NC_060929.1 NW_025791777.1 99.59 True relocation, inconsistency = 404979 71697679 71729908 1704877 1737113 NC_060929.1 NW_025791777.1 99.56 True local misassembly 71731194 71755891 1737114 1761813 NC_060929.1 NW_025791777.1 99.83 True indel: indel (> 5bp) 71755892 71817458 1761842 1823355 NC_060929.1 NW_025791777.1 99.74 True indel: indel (> 5bp) 71817519 71818464 1823356 1824301 NC_060929.1 NW_025791777.1 99.79 True indel: indel (> 5bp) 71818497 71916565 1824302 1922379 NC_060929.1 NW_025791777.1 99.85 True indel: indel (> 5bp) 71916566 72033194 1922404 2039035 NC_060929.1 NW_025791777.1 99.87 True indel: indel (> 5bp) 72033244 72095783 2039036 2101583 NC_060929.1 NW_025791777.1 99.86 True CONTIG NW_025791777.1 2101585 misassembled 3688274 3824285 1 135987 NC_060929.1 NW_018654712.1 99.77 True CONTIG NW_018654712.1 135987 correct 6226508 6434955 1 208405 NC_060929.1 NW_025791776.1 99.79 True CONTIG NW_025791776.1 208405 correct 21100324 21239469 1 139087 NC_060929.1 NW_009646199.1 99.71 True CONTIG NW_009646199.1 139087 correct 21456461 21820407 1 362221 NC_060929.1 NW_016107297.1 99.43 True CONTIG NW_016107297.1 362221 correct 23477700 23780190 1 302485 NC_060929.1 NW_025791779.1 99.84 True CONTIG NW_025791779.1 302485 correct 139935275 140025236 1 89956 NC_060929.1 NW_021159996.1 99.85 True CONTIG NW_021159996.1 89956 correct 141290158 141798465 1 508332 NC_060929.1 NW_025791778.1 99.9 True CONTIG NW_025791778.1 508332 correct 179788399 180462478 1 673059 NC_060929.1 NW_016107298.1 99.2 True CONTIG NW_016107298.1 673059 correct 182012023 182044123 335 32668 NC_060929.1 NW_025791775.1 99.13 True translocation 2054 2738 34380 33698 NC_060931.1 NW_025791775.1 96.35 True CONTIG NW_025791775.1 34400 misassembled 10356830 10599609 1 242796 NC_060930.1 NW_018654713.1 99.88 True CONTIG NW_018654713.1 242796 correct 12970128 13052449 1 82315 NC_060930.1 NW_013171803.1 99.85 True CONTIG NW_013171803.1 82315 correct 26322186 26328307 1 6122 NC_060930.1 NW_025791780.1 99.82 True indel: indel (> 5bp) 26328329 26592369 6123 270125 NC_060930.1 NW_025791780.1 99.85 True indel: indel (> 5bp) 26592397 26602468 270126 280194 NC_060930.1 NW_025791780.1 98.96 True local misassembly 26602925 26605247 281649 283986 NC_060930.1 NW_025791780.1 95.04 True relocation, inconsistency = 22939 26631111 26646021 286911 301829 NC_060930.1 NW_025791780.1 99.6 True indel: indel (> 5bp) 26646045 26659362 301830 315155 NC_060930.1 NW_025791780.1 99.83 True indel: indel (> 5bp) 26659387 26727339 315156 383128 NC_060930.1 NW_025791780.1 99.86 True CONTIG NW_025791780.1 383128 misassembled 62291632 62615522 1 320750 NC_060930.1 NW_012132918.1 96.27 True CONTIG NW_012132918.1 320750 correct 68690190 68958509 1 268330 NC_060930.1 NW_009646200.1 99.93 True CONTIG NW_009646200.1 268330 correct 83349778 83595358 1 245716 NC_060930.1 NW_013171802.1 99.69 True CONTIG NW_013171802.1 245716 correct 91014006 91153422 1 139427 NC_060930.1 NW_017363815.1 99.76 True CONTIG NW_017363815.1 139427 correct 96228586 96302067 1 73265 NC_060930.1 NW_021159997.1 99.6 True CONTIG NW_021159997.1 73265 correct 124552 379279 1 254759 NC_060931.1 NW_021159998.1 97.3 True CONTIG NW_021159998.1 254759 correct 9147237 9319862 1 172555 NC_060931.1 NW_019805493.1 99.73 True CONTIG NW_019805493.1 172555 correct 54167424 54395348 1 227944 NC_060931.1 NW_025791781.1 99.78 True relocation, inconsistency = -15109 54395575 54470352 302717 227945 NC_060931.1 NW_025791781.1 99.39 True inversion 54470127 54631117 302718 464417 NC_060931.1 NW_025791781.1 99.22 True CONTIG NW_025791781.1 464417 misassembled 100325681 100467713 1 142129 NC_060931.1 NW_017852929.1 99.66 True CONTIG NW_017852929.1 142129 correct 108470521 108938752 1 468267 NC_060931.1 NW_017852930.1 99.88 True CONTIG NW_017852930.1 468267 correct 144736064 145325915 1 589656 NC_060931.1 NW_018654714.1 99.79 True CONTIG NW_018654714.1 589656 correct 145325916 145474333 1 148422 NC_060931.1 NW_018654715.1 99.97 True relocation, inconsistency = -98606 145474334 145506224 247029 278930 NC_060931.1 NW_018654715.1 99.94 True relocation, inconsistency = -96610 145506225 145811388 375541 680662 NC_060931.1 NW_018654715.1 99.9 True CONTIG NW_018654715.1 680662 misassembled 155597746 155778560 1 179932 NC_060931.1 NW_012132919.1 99.27 True CONTIG NW_012132919.1 179932 correct 5818109 6248747 1 429744 NC_060932.1 NW_025791785.1 99.09 True CONTIG NW_025791785.1 429744 correct 6359180 7022081 1 673007 NC_060932.1 NW_018654717.1 97.77 True relocation, inconsistency = 204803 7226885 7265908 712017 673008 NC_060932.1 NW_018654717.1 99.44 True relocation, inconsistency = -9468 7213114 7226884 735260 721486 NC_060932.1 NW_018654717.1 99.59 True indel: indel (> 5bp) 7013578 7213081 934763 735261 NC_060932.1 NW_018654717.1 99.62 True relocation, scaffold gap is present, inconsistency = 110773 7328162 12352693 939071 5805410 NC_060932.1 NW_018654717.1 96.34 True relocation, inconsistency = 523426 12877787 13438393 5807078 6367528 NC_060932.1 NW_018654717.1 99.54 True CONTIG NW_018654717.1 6367528 misassembled 21664932 21930809 1 265876 NC_060932.1 NW_017852932.1 99.83 True CONTIG NW_017852932.1 265876 correct 48442163 48592479 1 150302 NC_060932.1 NW_025791782.1 99.88 True CONTIG NW_025791782.1 150302 correct 57399222 57556230 1 156998 NC_060932.1 NW_017852931.1 99.93 True CONTIG NW_017852931.1 156998 correct 125598115 125704988 1 106905 NC_060932.1 NW_025791784.1 99.8 True CONTIG NW_025791784.1 106905 correct 130850644 130870027 1 19371 NC_060932.1 NW_019805494.1 99.77 True indel: indel (> 5bp) 130870057 130871785 19372 21099 NC_060932.1 NW_019805494.1 99.71 True relocation, inconsistency = -9060 130871786 130944678 30160 103072 NC_060932.1 NW_019805494.1 99.81 True CONTIG NW_019805494.1 103072 misassembled 142454927 142669680 1 207371 NC_060932.1 NW_025791786.1 96.24 True CONTIG NW_025791786.1 207371 correct 145438200 145604332 1 165120 NC_060932.1 NW_018654716.1 98.73 True CONTIG NW_018654716.1 165120 correct 146220583 146259331 1 38765 NC_060932.1 NW_025791783.1 99.82 True translocation 99752508 99753028 38766 39279 NC_060939.1 NW_025791783.1 98.51 True CONTIG NW_025791783.1 39290 misassembled 8990288 9153889 1 163882 NC_060933.1 NW_013171804.1 99.48 True CONTIG NW_013171804.1 163882 correct 24955896 25089978 1 134099 NC_060933.1 NW_013171805.1 99.83 True CONTIG NW_013171805.1 134099 correct 38780757 39350484 569668 1 NC_060933.1 NW_025791789.1 99.8 True CONTIG NW_025791789.1 569668 correct 100673557 101016648 1 340717 NC_060933.1 NW_025791787.1 99.15 True CONTIG NW_025791787.1 340717 correct 104331779 104814091 1 482250 NC_060933.1 NW_025791788.1 99.94 True CONTIG NW_025791788.1 482250 correct 145388152 145718465 1 330164 NC_060933.1 NW_009646201.1 99.36 True CONTIG NW_009646201.1 330164 correct 146389768 146415524 1 25408 NC_060933.1 NW_021159999.1 97.62 True CONTIG NW_021159999.1 25408 correct 38407168 38447006 1 39842 NC_060934.1 NW_021160000.1 99.98 True indel: indel (> 5bp) 38447032 38587425 39843 180100 NC_060934.1 NW_021160000.1 99.84 True indel: indel (> 5bp) 38587426 38598151 180182 190878 NC_060934.1 NW_021160000.1 99.17 True indel: indel (> 5bp) 38598152 38600135 190995 192969 NC_060934.1 NW_021160000.1 95.01 True local misassembly 38600235 38611528 199201 210463 NC_060934.1 NW_021160000.1 98.69 True local misassembly 38612361 38618456 217678 223757 NC_060934.1 NW_021160000.1 97.19 True local misassembly 38618842 38842383 224944 454963 NC_060934.1 NW_021160000.1 95.51 True CONTIG NW_021160000.1 454963 correct 38986927 39406911 1 419621 NC_060934.1 NW_011332694.1 99.59 True CONTIG NW_011332694.1 420164 correct 48630477 48923594 1 292944 NC_060934.1 NW_021160001.1 99.62 True CONTIG NW_021160001.1 292944 correct 66362566 66548067 1 185507 NC_060934.1 NW_013171806.1 99.83 True CONTIG NW_013171806.1 185507 correct 75668849 75946625 1 277797 NC_060934.1 NW_009646202.1 99.96 True CONTIG NW_009646202.1 277797 correct 88668087 88932671 1 264545 NC_060934.1 NW_013171807.1 99.95 True CONTIG NW_013171807.1 264545 correct 117483064 117679571 1 196262 NC_060934.1 NW_025791790.1 99.59 True CONTIG NW_025791790.1 196262 correct 124987156 125072530 1 85284 NC_060934.1 NW_011332693.1 99.63 True CONTIG NW_011332693.1 85284 correct 132526131 132540473 1 14347 NC_060934.1 NW_011332692.1 99.91 True CONTIG NW_011332692.1 14347 correct 1071461 1278765 1 204999 NC_060935.1 NW_015148966.2 97.53 True CONTIG NW_015148966.2 204999 correct 1336911 1780394 1 434831 NC_060935.1 NW_025791792.1 97.15 True CONTIG NW_025791792.1 434831 correct 1895158 2165164 1 270122 NC_060935.1 NW_021160004.1 99.4 True CONTIG NW_021160004.1 270122 correct 5060605 5185745 1 122722 NC_060935.1 NW_025791794.1 97.21 True CONTIG NW_025791794.1 122722 correct 7837498 7855224 1 17704 NC_060935.1 NW_011332695.1 99.14 True indel: indel (> 5bp) 7855246 7913085 17705 75543 NC_060935.1 NW_011332695.1 99.58 True relocation, inconsistency = 10655 7923741 8009115 75544 160960 NC_060935.1 NW_011332695.1 99.64 True indel: indel (> 5bp) 8009142 8051730 160961 203552 NC_060935.1 NW_011332695.1 99.89 True CONTIG NW_011332695.1 203552 misassembled 18346677 18517602 1 170928 NC_060935.1 NW_021160006.1 99.83 True CONTIG NW_021160006.1 170928 correct 47732597 48012220 1 279644 NC_060935.1 NW_019805496.1 99.77 True CONTIG NW_019805496.1 279644 correct 49713073 50018421 1 305244 NC_060935.1 NW_019805495.1 99.73 True CONTIG NW_019805495.1 305244 correct 50135672 50276553 1 140877 NC_060935.1 NW_017363816.1 99.85 True CONTIG NW_017363816.1 140877 correct 56127608 56471777 1 344606 NC_060935.1 NW_025791793.1 99.73 True CONTIG NW_025791793.1 344606 correct 59861648 59999955 1 138326 NC_060935.1 NW_019805498.1 99.95 True local misassembly 60000850 60038569 143428 181167 NC_060935.1 NW_019805498.1 99.74 True CONTIG NW_019805498.1 181167 correct 70259128 70476205 1 217075 NC_060935.1 NW_021160005.1 99.97 True CONTIG NW_021160005.1 217075 correct 87871231 88036755 1 165419 NC_060935.1 NW_021160003.1 99.84 True CONTIG NW_021160003.1 165419 correct 90013955 90179634 1 165676 NC_060935.1 NW_019805497.1 99.98 True relocation, inconsistency = -30813 90179635 90187412 196490 204266 NC_060935.1 NW_019805497.1 99.88 True indel: indel (> 5bp) 90187600 90191375 204267 208042 NC_060935.1 NW_019805497.1 99.92 True indel: indel (> 5bp) 90191404 90250209 208043 266858 NC_060935.1 NW_019805497.1 99.93 True indel: indel (> 5bp) 90250236 90285001 266859 301637 NC_060935.1 NW_019805497.1 99.87 True CONTIG NW_019805497.1 301637 misassembled 92154970 92336917 1 181958 NC_060935.1 NW_013171808.1 99.89 True CONTIG NW_013171808.1 181958 correct 96548186 96593430 1 45257 NC_060935.1 NW_021160002.1 99.85 True CONTIG NW_021160002.1 45257 correct 104705095 104966160 1 261194 NC_060935.1 NW_025791791.1 99.68 True CONTIG NW_025791791.1 261194 correct 118998799 119107661 1 108875 NC_060935.1 NW_009646203.1 99.73 True CONTIG NW_009646203.1 108875 correct 1029398 1064041 1 34657 NC_060936.1 NW_013171809.1 99.81 True local misassembly 1064042 1075080 41620 52665 NC_060936.1 NW_013171809.1 99.48 True indel: indel (> 5bp) 1075081 1080724 52711 58358 NC_060936.1 NW_013171809.1 99.81 True indel: indel (> 5bp) 1080725 1081255 58495 59025 NC_060936.1 NW_013171809.1 98.68 True local misassembly 1081991 1082677 60258 60926 NC_060936.1 NW_013171809.1 95.92 True local misassembly 1083287 1084714 62750 64117 NC_060936.1 NW_013171809.1 95.24 True indel: indel (> 5bp) 1084828 1087853 64334 67356 NC_060936.1 NW_013171809.1 99.74 True indel: indel (> 5bp) 1087878 1115579 67357 95076 NC_060936.1 NW_013171809.1 99.82 True local misassembly 1116941 1130205 96042 109323 NC_060936.1 NW_013171809.1 99.45 True CONTIG NW_013171809.1 109323 correct 1654203 2704174 1 1046838 NC_060936.1 NW_018654718.1 99.22 True CONTIG NW_018654718.1 1046838 correct 7085022 7278212 1 192531 NC_060936.1 NW_021160008.1 99.23 True CONTIG NW_021160008.1 192531 correct 11900134 12441192 1 541038 NC_060936.1 NW_011332696.1 99.74 True CONTIG NW_011332696.1 541038 correct 17593601 17805130 1 211377 NC_060936.1 NW_009646204.1 99.61 True CONTIG NW_009646204.1 211377 correct 53241816 53346834 1 104537 NC_060936.1 NW_025791795.1 99.32 True CONTIG NW_025791795.1 104537 correct 86074946 86242618 1 174808 NC_060936.1 NW_018654720.1 95.66 True CONTIG NW_018654720.1 174808 correct 86749229 87064862 1 315610 NC_060936.1 NW_015148967.1 99.79 True CONTIG NW_015148967.1 315610 correct 121587381 121652121 1 64689 NC_060936.1 NW_018654719.1 99.64 True CONTIG NW_018654719.1 64689 correct 122053532 122141355 1 86533 NC_060936.1 NW_011332697.1 98.41 True CONTIG NW_011332697.1 86533 correct 127063757 127217747 1 154139 NC_060936.1 NW_019805499.1 99.36 True CONTIG NW_019805499.1 154139 correct 132141812 132441923 1 297568 NC_060936.1 NW_021160007.1 95.87 True CONTIG NW_021160007.1 297568 correct 5358316 5770548 14 409912 NC_060937.1 NW_021160012.1 97.64 True CONTIG NW_021160012.1 409912 correct 13550833 13913015 356766 1 NC_060937.1 NW_011332699.1 98.14 True CONTIG NW_011332699.1 356766 correct 83527467 83695628 1 168146 NC_060937.1 NW_013171810.1 99.8 True CONTIG NW_013171810.1 168146 correct 85451914 85457127 2232 7309 NC_060937.1 NW_021160009.1 97.2 True CONTIG NW_021160009.1 7309 correct 85457128 85462353 1 5228 NC_060937.1 NW_009646205.1 99.43 True local misassembly 85465848 85495351 6037 35455 NC_060937.1 NW_009646205.1 98.78 True CONTIG NW_009646205.1 35455 correct 100115914 100264729 1 148762 NC_060937.1 NW_011332700.1 99.71 True CONTIG NW_011332700.1 148762 correct 107832143 107950190 1 123480 NC_060937.1 NW_013171811.1 95.42 True CONTIG NW_013171811.1 123480 correct 110935656 111095004 1 158944 NC_060937.1 NW_021160010.1 99.08 True CONTIG NW_021160010.1 158944 correct 112908246 112972880 1 65394 NC_060937.1 NW_021160011.1 98.2 True CONTIG NW_021160011.1 65394 correct 113147793 113151306 1 3511 NC_060937.1 NW_011332698.1 99.77 True local misassembly 113151641 113155138 4245 7742 NC_060937.1 NW_011332698.1 99.94 True indel: indel (> 5bp) 113155297 113156504 7743 8962 NC_060937.1 NW_011332698.1 98.52 True local misassembly 113156865 113163243 8963 15341 NC_060937.1 NW_011332698.1 99.76 True indel: indel (> 5bp) 113163244 113166476 15376 18608 NC_060937.1 NW_011332698.1 99.66 True indel: indel (> 5bp) 113166477 113185018 18652 37187 NC_060937.1 NW_011332698.1 99.71 True indel: indel (> 5bp) 113185019 113186855 37329 39165 NC_060937.1 NW_011332698.1 99.84 True indel: indel (> 5bp) 113186856 113194760 39242 47142 NC_060937.1 NW_011332698.1 99.75 True indel: indel (> 5bp) 113194818 113197879 47143 50204 NC_060937.1 NW_011332698.1 99.58 True indel: indel (> 5bp) 113197880 113202426 50333 54877 NC_060937.1 NW_011332698.1 99.65 True indel: indel (> 5bp) 113202427 113205715 54910 58196 NC_060937.1 NW_011332698.1 99.54 True indel: indel (> 5bp) 113205716 113208060 58237 60582 NC_060937.1 NW_011332698.1 99.74 True local misassembly 113208568 113212960 60583 64974 NC_060937.1 NW_011332698.1 99.61 True local misassembly 113213471 113214157 66570 67260 NC_060937.1 NW_011332698.1 98.12 True local misassembly 113214725 113216515 68064 69854 NC_060937.1 NW_011332698.1 99.66 True local misassembly 113217266 113226313 69855 78882 NC_060937.1 NW_011332698.1 99.22 True indel: indel (> 5bp) 113226314 113227336 79082 80103 NC_060937.1 NW_011332698.1 98.83 True indel: indel (> 5bp) 113227386 113234578 80104 87313 NC_060937.1 NW_011332698.1 99.6 True indel: indel (> 5bp) 113234737 113235450 87314 88025 NC_060937.1 NW_011332698.1 99.16 True local misassembly 113235537 113236502 88553 89539 NC_060937.1 NW_011332698.1 96.76 True indel: indel (> 5bp) 113236503 113239428 89612 92535 NC_060937.1 NW_011332698.1 99.52 True indel: indel (> 5bp) 113239518 113249976 92536 102981 NC_060937.1 NW_011332698.1 99.52 True local misassembly 113251791 113260355 103522 112080 NC_060937.1 NW_011332698.1 99.49 True indel: indel (> 5bp) 113260401 113270022 112081 121700 NC_060937.1 NW_011332698.1 99.58 True indel: indel (> 5bp) 113270101 113274396 121701 125998 NC_060937.1 NW_011332698.1 99.81 True indel: indel (> 5bp) 113274397 113277324 126021 128916 NC_060937.1 NW_011332698.1 98.74 True indel: indel (> 5bp) 113277508 113278486 128917 129895 NC_060937.1 NW_011332698.1 99.69 True local misassembly 113278732 113281444 129896 132608 NC_060937.1 NW_011332698.1 99.71 True indel: indel (> 5bp) 113281511 113283737 132609 134835 NC_060937.1 NW_011332698.1 99.55 True indel: indel (> 5bp) 113283846 113291547 135052 142753 NC_060937.1 NW_011332698.1 99.86 True local misassembly 113291548 113292070 143024 143546 NC_060937.1 NW_011332698.1 99.04 True local misassembly 113292071 113292718 143817 144464 NC_060937.1 NW_011332698.1 99.07 True indel: indel (> 5bp) 113292719 113293736 144573 145590 NC_060937.1 NW_011332698.1 99.51 True local misassembly 113293737 113305419 146347 158025 NC_060937.1 NW_011332698.1 99.79 True indel: indel (> 5bp) 113305420 113306062 158102 158742 NC_060937.1 NW_011332698.1 99.69 True local misassembly 113307352 113311005 158972 162627 NC_060937.1 NW_011332698.1 99.84 True indel: indel (> 5bp) 113311408 113315746 162995 167350 NC_060937.1 NW_011332698.1 98.92 True indel: indel (> 5bp) 113315747 113318732 167378 170362 NC_060937.1 NW_011332698.1 99.46 True indel: indel (> 5bp) 113318733 113320887 170553 172709 NC_060937.1 NW_011332698.1 99.26 True local misassembly 113321704 113325208 172710 176216 NC_060937.1 NW_011332698.1 99.77 True indel: indel (> 5bp) 113325209 113328302 176370 179459 NC_060937.1 NW_011332698.1 97.48 True indel: indel (> 5bp) 113328337 113333836 179460 184958 NC_060937.1 NW_011332698.1 99.85 True indel: indel (> 5bp) 113333913 113341540 184959 192589 NC_060937.1 NW_011332698.1 99.86 True local misassembly 113341780 113346659 192590 197464 NC_060937.1 NW_011332698.1 99.63 True local misassembly 113347656 113351489 198872 202700 NC_060937.1 NW_011332698.1 99.53 True indel: indel (> 5bp) 113351490 113355067 202743 206320 NC_060937.1 NW_011332698.1 99.89 True CONTIG NW_011332698.1 206320 correct 2689041 2695810 1 6770 NC_060945.1 NW_021160013.1 99.72 True local misassembly 2698204 2704632 6771 13197 NC_060945.1 NW_021160013.1 99.59 True translocation 4408446 4793795 13198 399183 NC_060946.1 NW_021160013.1 98.8 True CONTIG NW_021160013.1 399183 misassembled 13996778 14717085 1 722645 NC_060938.1 NW_025791796.1 98.64 True CONTIG NW_025791796.1 722645 correct 17899640 18588700 7 690932 NC_060938.1 NW_018654722.1 99.4 True CONTIG NW_018654722.1 690932 correct 40501855 40766108 1 264228 NC_060938.1 NW_021160014.1 99.79 True CONTIG NW_021160014.1 264228 correct 57871443 58036502 1 171798 NC_060938.1 NW_018654721.1 95.98 True CONTIG NW_018654721.1 171798 correct 25608232 26691323 1 1076278 NC_060939.1 NW_011332701.1 99.24 True fake: scaffold gap size wrong estimation (local) 26694756 27740302 1079712 2121182 NC_060939.1 NW_011332701.1 99.39 True local misassembly 27741474 28229567 2122456 2608677 NC_060939.1 NW_011332701.1 99.3 True relocation, inconsistency = -58489 28229697 28323226 2702355 2608678 NC_060939.1 NW_011332701.1 99.5 True inversion 28323106 30123175 2702356 4501706 NC_060939.1 NW_011332701.1 99.76 True relocation, scaffold gap is present, inconsistency = 122413 30279147 30743219 4535265 4998962 NC_060939.1 NW_011332701.1 99.63 True CONTIG NW_011332701.1 4998962 misassembled 4408446 4793795 383538 1 NC_060946.1 NW_021160018.1 98.77 True translocation 2698204 2704632 389965 383539 NC_060945.1 NW_021160018.1 99.61 True local misassembly 2689258 2695810 396515 389966 NC_060945.1 NW_021160018.1 99.66 True CONTIG NW_021160018.1 396515 misassembled 17662317 17665708 9 3401 NC_060939.1 NW_021160017.1 98.0 True local misassembly 17666389 17668311 3402 5326 NC_060939.1 NW_021160017.1 97.87 True local misassembly 17668825 17670202 5327 6698 NC_060939.1 NW_021160017.1 96.14 True relocation, inconsistency = 15670 17685873 19406374 6699 1728299 NC_060939.1 NW_021160017.1 96.41 True relocation, inconsistency = 183487 19589862 19630860 1769339 1728300 NC_060939.1 NW_021160017.1 99.32 True relocation, inconsistency = -455313 20004467 20045173 1810067 1769341 NC_060939.1 NW_021160017.1 99.54 True indel: indel (> 5bp) 20002341 20004423 1812140 1810068 NC_060939.1 NW_021160017.1 98.42 True local misassembly 19996305 20002340 1818509 1812477 NC_060939.1 NW_021160017.1 99.44 True indel: indel (> 5bp) 19950750 19996194 1863972 1818510 NC_060939.1 NW_021160017.1 99.36 True local misassembly 19936623 19949849 1877231 1863973 NC_060939.1 NW_021160017.1 99.07 True indel: indel (> 5bp) 19930907 19936622 1882986 1877271 NC_060939.1 NW_021160017.1 99.56 True indel: indel (> 5bp) 19917644 19930880 1896217 1882987 NC_060939.1 NW_021160017.1 99.77 True relocation, inconsistency = -2384666 18665239 22286834 1911693 5500449 NC_060939.1 NW_021160017.1 98.41 True CONTIG NW_021160017.1 5500449 misassembled 27804063 27869626 1 65585 NC_060939.1 NW_012132920.1 97.48 True relocation, inconsistency = 1923851 29793478 30257208 528953 65586 NC_060939.1 NW_012132920.1 99.36 True fake: scaffold gap size wrong estimation (local) 28404240 28452762 1917518 1869011 NC_060939.1 NW_012132920.1 99.74 True relocation, scaffold gap is present, inconsistency = 1742538 30195401 30643235 1917619 2365364 NC_060939.1 NW_012132920.1 99.52 True CONTIG NW_012132920.1 2365364 misassembled 32059573 32263623 1 204007 NC_060939.1 NW_025791798.1 99.87 True CONTIG NW_025791798.1 204007 correct 72038496 72407718 1 369264 NC_060939.1 NW_021160016.1 99.88 True CONTIG NW_021160016.1 369264 correct 81262128 82121392 14 856670 NC_060939.1 NW_025791797.1 98.9 True relocation, inconsistency = -90029 82121393 82175161 910419 856671 NC_060939.1 NW_025791797.1 99.49 True inversion 82175162 82415117 910420 1154574 NC_060939.1 NW_025791797.1 97.7 True CONTIG NW_025791797.1 1154574 misassembled 99663137 99750530 1 87162 NC_060939.1 NW_021160015.1 99.7 True translocation 3725 12815 96445 87348 NC_060943.1 NW_021160015.1 99.1 True relocation, inconsistency = -8285 10694 11921 97763 96534 NC_060943.1 NW_021160015.1 99.51 True CONTIG NW_021160015.1 97763 misassembled 1953825 2041524 1 87715 NC_060940.1 NW_025791799.1 99.77 True CONTIG NW_025791799.1 87715 correct 2841109 2900249 1 59016 NC_060940.1 NW_013171812.1 99.61 True CONTIG NW_013171812.1 59016 correct 17004882 17486160 1 480415 NC_060940.1 NW_019805500.1 99.65 True CONTIG NW_019805500.1 480415 correct 21107249 23038684 1 1927115 NC_060940.1 NW_017852933.1 99.61 True CONTIG NW_017852933.1 1927115 correct 25026241 25297106 1 270967 NC_060940.1 NW_021160019.1 99.82 True CONTIG NW_021160019.1 270967 correct 76948422 77217219 1 267463 NC_060940.1 NW_013171813.1 99.31 True CONTIG NW_013171813.1 267463 correct 81216512 81252862 1 36320 NC_060940.1 NW_018654723.1 99.55 True inversion 81252946 81269588 52958 36321 NC_060940.1 NW_018654723.1 99.54 True inversion 81269506 81295136 52959 78609 NC_060940.1 NW_018654723.1 99.75 True CONTIG NW_018654723.1 78609 misassembled 81978428 82147572 1 169136 NC_060940.1 NW_012132921.1 99.83 True CONTIG NW_012132921.1 169136 correct 87013600 87347499 1 334997 NC_060940.1 NW_025791800.1 99.17 True CONTIG NW_025791800.1 334997 correct 324745 606917 1 281919 NC_060941.1 NW_017363817.1 98.29 True CONTIG NW_017363817.1 281919 correct 7145596 7283580 1 137908 NC_060941.1 NW_021160020.1 99.85 True CONTIG NW_021160020.1 137908 correct 7283581 7438326 1 154723 NC_060941.1 NW_016107299.1 99.74 True CONTIG NW_016107299.1 154723 correct 18186427 18453143 1 276292 NC_060941.1 NW_017363819.1 96.45 True CONTIG NW_017363819.1 276292 correct 31866535 32405022 1 538541 NC_060941.1 NW_025791803.1 99.91 True CONTIG NW_025791803.1 538541 correct 41914682 42288465 1 372839 NC_060941.1 NW_025791801.1 99.62 True CONTIG NW_025791801.1 372839 correct 53301892 53548822 1 246895 NC_060941.1 NW_017363818.1 99.91 True CONTIG NW_017363818.1 246895 correct 73706695 73823516 1 116753 NC_060941.1 NW_019805501.1 99.59 True CONTIG NW_019805501.1 116753 correct 75314093 75486658 1 172609 NC_060941.1 NW_025791806.1 99.83 True CONTIG NW_025791806.1 172609 correct 80875018 81110597 1 234878 NC_060941.1 NW_025791802.1 99.27 True CONTIG NW_025791802.1 234878 correct 82258152 82448591 1 187626 NC_060941.1 NW_025791805.1 97.05 True CONTIG NW_025791805.1 187626 correct 82653672 82710367 1 56695 NC_060941.1 NW_021160021.1 99.89 True CONTIG NW_021160021.1 56695 correct 84124514 84271047 76 144384 NC_060941.1 NW_025791804.1 96.61 True CONTIG NW_025791804.1 144689 correct 1899288 1995356 1 96073 NC_060942.1 NW_019805503.1 99.78 True relocation, inconsistency = -22553 1995357 2009764 118627 133036 NC_060942.1 NW_019805503.1 99.94 True indel: indel (> 5bp) 2009805 2027656 133227 151082 NC_060942.1 NW_019805503.1 99.87 True indel: indel (> 5bp) 2027657 2039726 151117 163186 NC_060942.1 NW_019805503.1 99.83 True CONTIG NW_019805503.1 163186 misassembled 22575006 22780936 1 205101 NC_060942.1 NW_014040928.1 99.45 True CONTIG NW_014040928.1 205101 correct 45571088 45801966 1 230843 NC_060942.1 NW_019805502.1 99.79 True CONTIG NW_019805502.1 230843 correct 48706186 49113376 1 407387 NC_060942.1 NW_013171814.1 99.79 True CONTIG NW_013171814.1 407387 correct 70638194 70731980 1 93070 NC_060942.1 NW_018654724.1 98.76 True CONTIG NW_018654724.1 93070 correct 36878086 37105693 1 226166 NC_060943.1 NW_025791809.1 99.21 True CONTIG NW_025791809.1 226166 correct 5813891 5903082 1 89211 NC_060943.1 NW_025791810.1 99.89 True CONTIG NW_025791810.1 89211 correct 8872701 9210169 1 333754 NC_060943.1 NW_025791807.1 98.46 True CONTIG NW_025791807.1 333754 correct 13914360 14341713 1 427210 NC_060943.1 NW_021160022.1 99.86 True indel: indel (> 5bp) 14341857 14407644 427211 493165 NC_060943.1 NW_021160022.1 99.49 True CONTIG NW_021160022.1 493165 correct 41394346 41799673 1 405389 NC_060943.1 NW_014040929.1 99.57 True CONTIG NW_014040929.1 405389 correct 42023775 42161713 1 137818 NC_060943.1 NW_025791808.1 99.85 True CONTIG NW_025791808.1 137818 correct 42544401 42699734 1 154717 NC_060943.1 NW_009646206.1 99.23 True local misassembly 42700315 42715587 155276 170572 NC_060943.1 NW_009646206.1 99.0 True indel: indel (> 5bp) 42715895 42915981 170860 370917 NC_060943.1 NW_009646206.1 99.94 True CONTIG NW_009646206.1 370917 correct 57791599 57846098 1 55020 NC_060943.1 NW_016107300.1 97.8 True local misassembly 57848423 57956792 57560 163926 NC_060943.1 NW_016107300.1 97.13 True CONTIG NW_016107300.1 163926 correct 57791599 57846098 1 55043 NC_060943.1 NW_016107301.1 97.74 True local misassembly 57848423 57962881 57582 170206 NC_060943.1 NW_016107301.1 97.63 True CONTIG NW_016107301.1 170206 correct 57791599 57846098 1 55011 NC_060943.1 NW_016107302.1 97.89 True local misassembly 57848423 57960791 57551 168131 NC_060943.1 NW_016107302.1 97.48 True CONTIG NW_016107302.1 168131 correct 57791599 57846098 1 54980 NC_060943.1 NW_016107303.1 97.94 True local misassembly 57848423 57849885 57520 58979 NC_060943.1 NW_016107303.1 95.22 True indel: indel (> 5bp) 57849886 57853977 59005 63102 NC_060943.1 NW_016107303.1 96.66 True indel: indel (> 5bp) 57854067 57856997 63103 66034 NC_060943.1 NW_016107303.1 97.03 True local misassembly 57858741 57898306 66052 105643 NC_060943.1 NW_016107303.1 99.31 True indel: indel (> 5bp) 57898341 57913546 105644 120844 NC_060943.1 NW_016107303.1 99.47 True local misassembly 57913663 57924374 121336 132073 NC_060943.1 NW_016107303.1 98.17 True relocation, inconsistency = -43019 57921758 57923548 172476 174267 NC_060943.1 NW_016107303.1 95.05 True relocation, inconsistency = -62921 57860628 57896594 174268 210253 NC_060943.1 NW_016107303.1 99.06 True fake: scaffold gap size wrong estimation (local) 57897606 57924926 210354 238020 NC_060943.1 NW_016107303.1 97.26 True relocation, inconsistency = -62940 57861987 57864012 238021 240047 NC_060943.1 NW_016107303.1 96.25 True relocation, inconsistency = -44756 57836462 57846301 257253 267084 NC_060943.1 NW_016107303.1 96.99 True relocation, inconsistency = 80649 57929006 57953411 269140 293522 NC_060943.1 NW_016107303.1 97.05 True CONTIG NW_016107303.1 293522 misassembled 57791599 57846098 1 55010 NC_060943.1 NW_016107304.1 97.83 True local misassembly 57848423 57849885 57551 59011 NC_060943.1 NW_016107304.1 95.35 True indel: indel (> 5bp) 57849886 57853977 59037 63134 NC_060943.1 NW_016107304.1 96.63 True indel: indel (> 5bp) 57854067 57856997 63135 66066 NC_060943.1 NW_016107304.1 97.03 True local misassembly 57858741 57898306 66084 105662 NC_060943.1 NW_016107304.1 99.38 True indel: indel (> 5bp) 57898341 57913546 105663 120864 NC_060943.1 NW_016107304.1 99.48 True local misassembly 57913663 57924374 121356 132093 NC_060943.1 NW_016107304.1 98.17 True relocation, inconsistency = -27023 57933081 58006289 167823 241058 NC_060943.1 NW_016107304.1 99.34 True CONTIG NW_016107304.1 241058 misassembled 57791599 57846098 1 54998 NC_060943.1 NW_016107305.1 98.0 True local misassembly 57848423 57951964 57538 159285 NC_060943.1 NW_016107305.1 97.69 True CONTIG NW_016107305.1 159285 correct 57791599 57846301 1 54992 NC_060943.1 NW_016107306.1 99.04 True local misassembly 57848423 57971918 57349 178197 NC_060943.1 NW_016107306.1 97.13 True CONTIG NW_016107306.1 178197 correct 57791599 57846098 1 54969 NC_060943.1 NW_016107307.1 98.04 True local misassembly 57848423 57959411 57509 166713 NC_060943.1 NW_016107307.1 97.48 True CONTIG NW_016107307.1 166713 correct 57791599 57846098 1 54990 NC_060943.1 NW_016107308.1 98.0 True local misassembly 57848423 57849885 57530 58989 NC_060943.1 NW_016107308.1 95.22 True indel: indel (> 5bp) 57849886 57853977 59015 63112 NC_060943.1 NW_016107308.1 96.56 True indel: indel (> 5bp) 57854067 57856997 63113 66044 NC_060943.1 NW_016107308.1 97.03 True local misassembly 57858741 57874850 66062 82159 NC_060943.1 NW_016107308.1 98.22 True relocation, inconsistency = 64315 57939166 57946884 82160 89913 NC_060943.1 NW_016107308.1 99.01 True relocation, inconsistency = 14954 57961839 57971779 89914 99845 NC_060943.1 NW_016107308.1 99.73 True CONTIG NW_016107308.1 99845 misassembled 57791599 57846098 1 55009 NC_060943.1 NW_016107309.1 97.88 True local misassembly 57848423 57953755 57549 161095 NC_060943.1 NW_016107309.1 97.37 True CONTIG NW_016107309.1 161095 correct 57791599 57804917 1 13319 NC_060943.1 NW_016107310.1 99.95 True local misassembly 57804918 57817096 13600 25774 NC_060943.1 NW_016107310.1 99.61 True relocation, inconsistency = 14021 57831118 57853991 25775 48646 NC_060943.1 NW_016107310.1 99.84 True indel: indel (> 5bp) 57854026 57863021 48647 57636 NC_060943.1 NW_016107310.1 99.8 True relocation, inconsistency = -43096 57863022 57898306 100733 136029 NC_060943.1 NW_016107310.1 99.33 True indel: indel (> 5bp) 57898341 57913546 136030 151231 NC_060943.1 NW_016107310.1 99.48 True local misassembly 57913663 57924374 151723 162460 NC_060943.1 NW_016107310.1 98.17 True relocation, inconsistency = -26802 57933081 57958211 197969 223118 NC_060943.1 NW_016107310.1 98.27 True CONTIG NW_016107310.1 223118 misassembled 57791599 57846098 1 54992 NC_060943.1 NW_016107311.1 98.01 True local misassembly 57848423 57849885 57532 58991 NC_060943.1 NW_016107311.1 95.35 True indel: indel (> 5bp) 57849886 57853977 59017 63112 NC_060943.1 NW_016107311.1 96.68 True indel: indel (> 5bp) 57854067 57856997 63113 66044 NC_060943.1 NW_016107311.1 96.96 True local misassembly 57858741 57875008 66062 82333 NC_060943.1 NW_016107311.1 98.67 True relocation, inconsistency = 80513 57955522 57973749 82334 100553 NC_060943.1 NW_016107311.1 99.86 True CONTIG NW_016107311.1 100553 misassembled 57791599 57846098 1 55031 NC_060943.1 NW_016107313.1 97.85 True local misassembly 57848423 57849885 57571 59030 NC_060943.1 NW_016107313.1 95.15 True indel: indel (> 5bp) 57849886 57853977 59056 63151 NC_060943.1 NW_016107313.1 96.56 True indel: indel (> 5bp) 57854067 57856997 63152 66083 NC_060943.1 NW_016107313.1 97.03 True local misassembly 57858741 57880438 66101 87802 NC_060943.1 NW_016107313.1 98.58 True indel: indel (> 5bp) 57880619 57963966 87916 171263 NC_060943.1 NW_016107313.1 99.97 True CONTIG NW_016107313.1 171263 correct 57791599 57865214 1 73753 NC_060943.1 NW_016107314.1 98.97 True relocation, inconsistency = 14822 57880695 57952018 74412 145691 NC_060943.1 NW_016107314.1 99.56 True CONTIG NW_016107314.1 145691 misassembled 57928841 58006289 77334 1 NC_060943.1 NW_016107312.1 98.82 True relocation, inconsistency = 35554 57813518 57865214 156964 105407 NC_060943.1 NW_016107312.1 99.11 True CONTIG NW_016107312.1 156965 misassembled 13835184 14109366 1 273725 NC_060944.1 NW_025791811.1 99.71 True CONTIG NW_025791811.1 273725 correct 38814894 39170335 1 355731 NC_060944.1 NW_025791812.1 99.74 True CONTIG NW_025791812.1 355731 correct 9853171 9853763 594 1 NC_060946.1 NW_021160023.1 95.32 True translocation 5358316 5369929 595 12207 NC_060937.1 NW_021160023.1 99.31 True indel: indel (> 5bp) 5369930 5370547 12256 12874 NC_060937.1 NW_021160023.1 99.19 True indel: indel (> 5bp) 5370596 5372008 12875 14287 NC_060937.1 NW_021160023.1 99.5 True indel: indel (> 5bp) 5372009 5374417 14336 16737 NC_060937.1 NW_021160023.1 99.13 True indel: indel (> 5bp) 5374418 5376871 16786 19241 NC_060937.1 NW_021160023.1 99.43 True indel: indel (> 5bp) 5376872 5388062 19386 30573 NC_060937.1 NW_021160023.1 99.79 True translocation 2707471 2760314 30574 85376 NC_060945.1 NW_021160023.1 97.8 True translocation 5422616 5862735 85377 519485 NC_060937.1 NW_021160023.1 97.75 True CONTIG NW_021160023.1 519485 misassembled 27271949 27608775 1 336752 NC_060945.1 NW_025791813.1 99.37 True CONTIG NW_025791813.1 336752 correct 38248140 39269595 1 1020778 NC_060945.1 NW_025791814.1 99.4 True CONTIG NW_025791814.1 1020778 correct 43748431 43941502 1 189707 NC_060945.1 NW_025791815.1 97.18 True CONTIG NW_025791815.1 189707 correct 1698125 1703816 1475 7164 NC_060938.1 NW_021160026.1 98.61 True indel: indel (> 5bp) 1703817 1704554 7213 7953 NC_060938.1 NW_021160026.1 98.11 True indel: indel (> 5bp) 1704603 1705264 7954 8615 NC_060938.1 NW_021160026.1 98.64 True local misassembly 1705734 1707319 9182 10767 NC_060938.1 NW_021160026.1 98.36 True local misassembly 1707657 1717786 16609 26729 NC_060938.1 NW_021160026.1 98.66 True indel: indel (> 5bp) 1718065 1719499 27104 28538 NC_060938.1 NW_021160026.1 98.75 True indel: indel (> 5bp) 1719500 1721589 28587 30676 NC_060938.1 NW_021160026.1 98.9 True indel: indel (> 5bp) 1721590 1723923 30723 33058 NC_060938.1 NW_021160026.1 98.97 True local misassembly 1724188 1725248 33059 34119 NC_060938.1 NW_021160026.1 98.77 True local misassembly 1725249 1729269 34741 38757 NC_060938.1 NW_021160026.1 99.01 True local misassembly 1729595 1734636 39275 44312 NC_060938.1 NW_021160026.1 99.48 True indel: indel (> 5bp) 1734637 1747035 44361 56759 NC_060938.1 NW_021160026.1 99.67 True indel: indel (> 5bp) 1747036 1757862 56808 67635 NC_060938.1 NW_021160026.1 99.45 True indel: indel (> 5bp) 1757908 1767931 67636 77668 NC_060938.1 NW_021160026.1 98.33 True local misassembly 1767932 1859431 83358 174791 NC_060938.1 NW_021160026.1 99.06 True indel: indel (> 5bp) 1859432 1908589 174815 223977 NC_060938.1 NW_021160026.1 98.94 True indel: indel (> 5bp) 1908590 1924414 224018 239831 NC_060938.1 NW_021160026.1 98.48 True local misassembly 1929477 1940872 239832 251232 NC_060938.1 NW_021160026.1 99.4 True translocation 2947240 2981655 251233 285686 NC_060945.1 NW_021160026.1 99.02 True indel: indel (> 5bp) 2981777 2989543 285881 293652 NC_060945.1 NW_021160026.1 98.49 True indel: indel (> 5bp) 2989567 3019851 293653 323928 NC_060945.1 NW_021160026.1 98.99 True indel: indel (> 5bp) 3019852 3052362 323976 356471 NC_060945.1 NW_021160026.1 99.21 True indel: indel (> 5bp) 3052424 3108299 356472 412368 NC_060945.1 NW_021160026.1 99.54 True CONTIG NW_021160026.1 412368 misassembled 16700934 17165294 1 461303 NC_060946.1 NW_021160024.1 98.79 True CONTIG NW_021160024.1 461303 correct 42564640 42592176 1 27541 NC_060946.1 NW_009646207.1 99.76 True indel: indel (> 5bp) 42592177 42598817 27601 34244 NC_060946.1 NW_009646207.1 99.73 True indel: indel (> 5bp) 42598818 42605384 34273 40852 NC_060946.1 NW_009646207.1 99.24 True relocation, inconsistency = 12155 42617540 42733261 40853 156562 NC_060946.1 NW_009646207.1 99.96 True CONTIG NW_009646207.1 156562 misassembled 42574878 42592176 1 17298 NC_060946.1 NW_014040930.1 99.75 True indel: indel (> 5bp) 42592177 42598817 17358 24001 NC_060946.1 NW_014040930.1 99.73 True indel: indel (> 5bp) 42598818 42605455 24030 30680 NC_060946.1 NW_014040930.1 99.17 True local misassembly 42605456 42608698 32243 35469 NC_060946.1 NW_014040930.1 96.36 True indel: indel (> 5bp) 42609182 42611507 35928 38288 NC_060946.1 NW_014040930.1 95.77 True local misassembly 42621772 42733261 44459 155930 NC_060946.1 NW_014040930.1 99.85 True CONTIG NW_014040930.1 155930 correct 42585990 42592176 1 6186 NC_060946.1 NW_014040931.1 99.84 True indel: indel (> 5bp) 42592177 42599273 6246 13346 NC_060946.1 NW_014040931.1 99.7 True indel: indel (> 5bp) 42599274 42618354 13373 32450 NC_060946.1 NW_014040931.1 99.58 True relocation, inconsistency = -27413 42618355 42733261 59864 174749 NC_060946.1 NW_014040931.1 99.91 True CONTIG NW_014040931.1 174749 misassembled 42593955 42599273 1 5322 NC_060946.1 NW_009646208.1 99.62 True indel: indel (> 5bp) 42599274 42611521 5349 17596 NC_060946.1 NW_009646208.1 99.55 True relocation, inconsistency = -13707 42611522 42733261 31304 153027 NC_060946.1 NW_009646208.1 99.87 True CONTIG NW_009646208.1 153027 misassembled 42601752 42617279 1 15527 NC_060946.1 NW_015148968.1 99.6 True relocation, inconsistency = -13659 42617280 42733261 29187 145162 NC_060946.1 NW_015148968.1 99.87 True CONTIG NW_015148968.1 145162 misassembled 50475464 50487758 1 12295 NC_060946.1 NW_021160025.1 98.24 True CONTIG NW_021160025.1 12295 correct 51177877 51278423 1 101040 NC_060946.1 NW_015148969.2 96.16 True CONTIG NW_015148969.2 101040 correct 4496120 4683877 1 187981 NC_060947.1 NW_017363820.1 99.34 True CONTIG NW_017363820.1 188004 correct 36677107 36694540 1 17435 NC_060947.1 NW_021160031.1 99.31 True CONTIG NW_021160031.1 17435 correct 48251652 48583290 1 330493 NC_060947.1 NW_025791820.1 99.48 True CONTIG NW_025791820.1 330493 correct 49531414 49560305 1 28824 NC_060947.1 NW_021160028.1 99.7 True CONTIG NW_021160028.1 28824 correct 100549506 100618295 1 68810 NC_060947.1 NW_025791816.1 99.89 True CONTIG NW_025791816.1 68810 correct 112707356 112775489 1 68192 NC_060947.1 NW_021160029.1 99.52 True CONTIG NW_021160029.1 68192 correct 117926721 118067284 1 140567 NC_060947.1 NW_025791817.1 99.82 True CONTIG NW_025791817.1 140567 correct 118975387 119383583 1 403128 NC_060947.1 NW_021160027.1 98.64 True CONTIG NW_021160027.1 403128 correct 142019937 142314058 1 294119 NC_060947.1 NW_025791819.1 99.9 True CONTIG NW_025791819.1 294119 correct 142727366 142742059 1 14678 NC_060947.1 NW_021160030.1 99.39 True CONTIG NW_021160030.1 14678 correct 150651536 150992484 1 341035 NC_060947.1 NW_025791818.1 99.86 True relocation, inconsistency = -47314 150996333 151009150 353894 341036 NC_060947.1 NW_025791818.1 99.7 True inversion 151005287 151271294 353895 619716 NC_060947.1 NW_025791818.1 99.55 True CONTIG NW_025791818.1 619716 misassembled 8690226 8738855 1 48370 NC_060948.1 NW_018654725.1 99.44 True CONTIG NW_018654725.1 48370 correct 8738856 8969909 1 231059 NC_060948.1 NW_025791821.1 99.94 True indel: indel (> 5bp) 8969942 9010504 231060 271629 NC_060948.1 NW_025791821.1 99.76 True indel: indel (> 5bp) 9010578 9077240 271711 338317 NC_060948.1 NW_025791821.1 99.78 True relocation, inconsistency = 20266 9097507 9172813 338318 413616 NC_060948.1 NW_025791821.1 99.89 True indel: indel (> 5bp) 9172842 9185435 413617 426214 NC_060948.1 NW_025791821.1 99.8 True relocation, inconsistency = 60838 9246274 9248517 426215 428476 NC_060948.1 NW_025791821.1 99.16 True relocation, inconsistency = 20281 9268799 9274227 428477 433911 NC_060948.1 NW_025791821.1 99.65 True indel: indel (> 5bp) 9274256 9318182 433912 477855 NC_060948.1 NW_025791821.1 99.77 True relocation, inconsistency = 20279 9338462 9349938 477856 489352 NC_060948.1 NW_025791821.1 99.66 True relocation, inconsistency = 20281 9370220 9375648 489353 494781 NC_060948.1 NW_025791821.1 99.91 True indel: indel (> 5bp) 9375679 9422819 494782 541917 NC_060948.1 NW_025791821.1 99.76 True relocation, inconsistency = 20317 9443137 9444156 541918 542937 NC_060948.1 NW_025791821.1 99.61 True relocation, inconsistency = 20289 9464446 9477133 542938 555627 NC_060948.1 NW_025791821.1 99.73 True indel: indel (> 5bp) 9477134 9497450 555650 575945 NC_060948.1 NW_025791821.1 99.62 True indel: indel (> 5bp) 9497451 9510030 576012 588596 NC_060948.1 NW_025791821.1 99.72 True relocation, inconsistency = 20265 9530296 9555144 588597 613435 NC_060948.1 NW_025791821.1 99.79 True relocation, inconsistency = 20301 9575446 9639498 613436 677419 NC_060948.1 NW_025791821.1 99.76 True indel: indel (> 5bp) 9639527 9659825 677420 697724 NC_060948.1 NW_025791821.1 99.87 True indel: indel (> 5bp) 9659848 9679420 697725 717261 NC_060948.1 NW_025791821.1 99.69 True relocation, inconsistency = 20282 9699703 9700830 717262 718389 NC_060948.1 NW_025791821.1 99.91 True relocation, inconsistency = 20308 9721139 9722566 718390 719817 NC_060948.1 NW_025791821.1 99.86 True relocation, inconsistency = 20309 9742876 9770010 719818 746941 NC_060948.1 NW_025791821.1 99.7 True relocation, inconsistency = 20300 9790311 9791748 746942 748375 NC_060948.1 NW_025791821.1 99.37 True relocation, inconsistency = 40639 9832388 9949789 748376 865743 NC_060948.1 NW_025791821.1 99.91 True CONTIG NW_025791821.1 865743 misassembled 22454181 22664169 1 209722 NC_060948.1 NW_018654726.1 99.86 True CONTIG NW_018654726.1 209722 correct 62022224 62123572 4 101150 NC_060948.1 NW_009646209.1 99.74 True CONTIG NW_009646209.1 101150 correct 1890011 2104118 1 213058 NC_060925.1 NT_187515.1 99.18 True relocation, inconsistency = 83333 2195137 2196675 220744 222282 NC_060925.1 NT_187515.1 99.48 True indel: indel (> 5bp) 2196676 2197445 222324 223093 NC_060925.1 NT_187515.1 99.74 True local misassembly 2199093 2199601 223094 223602 NC_060925.1 NT_187515.1 99.8 True local misassembly 2201690 2206106 223603 228019 NC_060925.1 NT_187515.1 98.96 True local misassembly 2206864 2207635 228215 228986 NC_060925.1 NT_187515.1 99.09 True indel: indel (> 5bp) 2207636 2209071 229068 230503 NC_060925.1 NT_187515.1 99.23 True local misassembly 2209072 2211821 231066 233825 NC_060925.1 NT_187515.1 99.2 True indel: indel (> 5bp) 2211822 2213654 233866 235698 NC_060925.1 NT_187515.1 99.51 True local misassembly 2214177 2216942 235699 238474 NC_060925.1 NT_187515.1 99.06 True local misassembly 2218347 2222597 238475 242725 NC_060925.1 NT_187515.1 99.65 True relocation, inconsistency = 13076 2236940 2238744 243992 245796 NC_060925.1 NT_187515.1 99.67 True indel: indel (> 5bp) 2238786 2245876 245797 252885 NC_060925.1 NT_187515.1 99.68 True relocation, scaffold gap is present, inconsistency = -60379 2245969 2257849 313357 325237 NC_060925.1 NT_187515.1 99.58 True local misassembly 2261232 2262978 325238 326984 NC_060925.1 NT_187515.1 99.77 True local misassembly 2262979 2264680 327188 328889 NC_060925.1 NT_187515.1 99.88 True indel: indel (> 5bp) 2264841 2266520 328890 330569 NC_060925.1 NT_187515.1 99.7 True local misassembly 2266724 2276262 330570 340109 NC_060925.1 NT_187515.1 99.82 True local misassembly 2276670 2291021 340110 354444 NC_060925.1 NT_187515.1 99.78 True CONTIG NT_187515.1 354444 misassembled 12432967 12691252 256271 1 NC_060925.1 NT_187517.1 98.77 True CONTIG NT_187517.1 256271 correct 30195528 30305113 1 109528 NC_060925.1 NT_187514.1 99.79 True CONTIG NT_187514.1 109528 correct 143392543 143577912 185285 1 NC_060925.1 NT_187520.1 99.92 True CONTIG NT_187520.1 185285 correct 152841224 152858626 1 17371 NC_060925.1 NW_003315905.1 99.51 True relocation, inconsistency = -20692 152837935 153002992 17372 182439 NC_060925.1 NW_003315905.1 99.8 True CONTIG NW_003315905.1 182439 misassembled 154354150 154369532 1 15376 NC_060925.1 NW_003315906.1 99.45 True relocation, inconsistency = -20588 154348945 154443785 15377 110268 NC_060925.1 NW_003315906.1 99.78 True CONTIG NW_003315906.1 110268 misassembled 197629472 197985091 1 366580 NC_060925.1 NW_003315907.2 96.67 True CONTIG NW_003315907.2 366580 correct 233550052 233600979 1 50258 NC_060925.1 NT_187521.1 98.54 True CONTIG NT_187521.1 50258 correct 242398913 243310716 1 911658 NC_060925.1 NT_187519.1 99.66 True CONTIG NT_187519.1 911658 correct 244723314 245148320 1 425601 NC_060925.1 NT_187516.1 99.73 True CONTIG NT_187516.1 425601 correct 247778556 247788171 1 9609 NC_060925.1 NT_187518.1 99.53 True indel: indel (> 5bp) 247788172 247809501 9694 31029 NC_060925.1 NT_187518.1 99.54 True local misassembly 247809664 247829272 32960 52563 NC_060925.1 NT_187518.1 99.48 True local misassembly 247830189 247833752 58587 62166 NC_060925.1 NT_187518.1 99.33 True relocation, inconsistency = 8427 247842180 247842943 62167 62930 NC_060925.1 NT_187518.1 95.94 True relocation, inconsistency = 10600 247853544 247877897 62931 87274 NC_060925.1 NT_187518.1 99.59 True indel: indel (> 5bp) 247877898 247889495 87320 98911 NC_060925.1 NT_187518.1 99.1 True indel: indel (> 5bp) 247889559 247924224 98912 133550 NC_060925.1 NT_187518.1 99.34 True indel: indel (> 5bp) 247924225 247928131 133575 137497 NC_060925.1 NT_187518.1 98.39 True indel: indel (> 5bp) 247928170 247956523 137498 165834 NC_060925.1 NT_187518.1 99.36 True CONTIG NT_187518.1 165834 misassembled 728342 859514 1 136240 NC_060926.1 NT_187525.1 96.01 True CONTIG NT_187525.1 136240 correct 1204061 1221020 1 16960 NC_060926.1 NT_187526.1 99.94 True indel: indel (> 5bp) 1221327 1276450 17375 70887 NC_060926.1 NT_187526.1 95.64 True CONTIG NT_187526.1 70887 correct 1318439 1533771 1 212012 NC_060926.1 NT_187529.1 97.65 True local misassembly 1534767 1535384 212013 212658 NC_060926.1 NT_187529.1 95.34 True local misassembly 1540999 1541866 218563 219431 NC_060926.1 NT_187529.1 98.73 True local misassembly 1543280 1546671 220237 223625 NC_060926.1 NT_187529.1 99.76 True CONTIG NT_187529.1 223625 correct 3414016 3533200 1 120616 NC_060926.1 NT_187522.1 97.34 True CONTIG NT_187522.1 120616 correct 36232592 36369970 143390 1 NC_060926.1 NW_003315908.1 95.55 True CONTIG NW_003315908.1 143390 correct 91587410 91610451 1 23042 NC_060926.1 NT_187524.1 98.48 True relocation, inconsistency = 3168894 94779346 94832467 76079 23043 NC_060926.1 NT_187524.1 98.6 True relocation, inconsistency = 3842230 90936142 90937115 77048 76080 NC_060926.1 NT_187524.1 98.23 True indel: indel (> 5bp) 90934794 90935992 78427 77216 NC_060926.1 NT_187524.1 98.6 True indel: indel (> 5bp) 90908191 90934767 105001 78428 NC_060926.1 NT_187524.1 99.96 True local misassembly 90899253 90907724 113473 105002 NC_060926.1 NT_187524.1 99.98 True relocation, inconsistency = 54644 90825042 90844307 133041 113775 NC_060926.1 NT_187524.1 99.97 True CONTIG NT_187524.1 133041 misassembled 116333644 116471655 1 138019 NC_060926.1 NT_187531.1 99.94 True CONTIG NT_187531.1 138019 correct 117305587 117381598 1 76017 NC_060926.1 NT_187530.1 99.84 True local misassembly 117382018 117412927 79500 110395 NC_060926.1 NT_187530.1 99.95 True CONTIG NT_187530.1 110395 correct 132131682 132241733 1 110099 NC_060926.1 NT_187528.1 99.79 True CONTIG NT_187528.1 110099 correct 149384423 149408325 1 23899 NC_060926.1 NW_003571033.2 99.95 True local misassembly 149408326 149474495 29987 96131 NC_060926.1 NW_003571033.2 99.94 True CONTIG NW_003571033.2 96131 correct 169287851 169411684 1 123821 NC_060926.1 NW_003315909.1 99.82 True CONTIG NW_003315909.1 123821 correct 242290432 242307639 1 17208 NC_060926.1 NT_187527.1 99.91 True local misassembly 242309301 242349435 19603 59736 NC_060926.1 NT_187527.1 99.92 True local misassembly 242350036 242367860 60587 78408 NC_060926.1 NT_187527.1 99.85 True indel: indel (> 5bp) 242367912 242376509 78409 87006 NC_060926.1 NT_187527.1 99.92 True indel: indel (> 5bp) 242376860 242379719 87198 90047 NC_060926.1 NT_187527.1 99.02 True local misassembly 242380037 242380763 90048 90774 NC_060926.1 NT_187527.1 99.72 True indel: indel (> 5bp) 242380836 242381383 90775 91322 NC_060926.1 NT_187527.1 99.45 True indel: indel (> 5bp) 242381415 242390088 91323 100000 NC_060926.1 NT_187527.1 99.67 True local misassembly 242391530 242392120 100001 100590 NC_060926.1 NT_187527.1 99.66 True indel: indel (> 5bp) 242392121 242400023 100705 108610 NC_060926.1 NT_187527.1 99.82 True local misassembly 242404654 242410158 108909 114415 NC_060926.1 NT_187527.1 99.78 True indel: indel (> 5bp) 242410261 242436801 114416 140926 NC_060926.1 NT_187527.1 99.65 True local misassembly 242436802 242437334 141422 141952 NC_060926.1 NT_187527.1 96.62 True local misassembly 242437335 242469359 142159 174166 NC_060926.1 NT_187527.1 99.75 True CONTIG NT_187527.1 174166 correct 242469360 242627123 1 161578 NC_060926.1 NT_187523.1 95.35 True CONTIG NT_187523.1 161578 correct 11811015 11984454 173151 1 NC_060927.1 NW_003871060.2 99.58 True CONTIG NW_003871060.2 173151 correct 20281967 20391218 1 109187 NC_060927.1 NT_187535.1 99.77 True CONTIG NT_187535.1 109187 correct 128392120 128616348 1 224108 NC_060927.1 NT_187537.1 99.72 True CONTIG NT_187537.1 224108 correct 154346431 154527155 1 180671 NC_060927.1 NW_003315913.1 99.69 True CONTIG NW_003315913.1 180671 correct 156882586 157056321 173649 1 NC_060927.1 NT_187533.1 99.74 True CONTIG NT_187533.1 173649 correct 169083898 169327386 1 248252 NC_060927.1 NT_187536.1 97.78 True CONTIG NT_187536.1 248252 correct 187234408 187348178 113034 1 NC_060927.1 NT_187538.1 99.03 True CONTIG NT_187538.1 113034 correct 198336334 198351315 1 14981 NC_060927.1 NT_187532.1 99.2 True local misassembly 198354550 198355509 15245 16204 NC_060927.1 NT_187532.1 99.27 True indel: indel (> 5bp) 198355557 198356273 16205 16921 NC_060927.1 NT_187532.1 99.02 True local misassembly 198356738 198357571 17622 18455 NC_060927.1 NT_187532.1 97.36 True indel: indel (> 5bp) 198357994 198359266 18736 20009 NC_060927.1 NT_187532.1 99.22 True relocation, inconsistency = 320993 198680680 198717545 57290 20430 NC_060927.1 NT_187532.1 98.76 True local misassembly 198669800 198680421 68695 58073 NC_060927.1 NT_187532.1 99.47 True indel: indel (> 5bp) 198668690 198669767 69773 68696 NC_060927.1 NT_187532.1 99.54 True indel: indel (> 5bp) 198668055 198668689 70451 69815 NC_060927.1 NT_187532.1 99.53 True local misassembly 198657252 198667724 80936 70452 NC_060927.1 NT_187532.1 99.6 True local misassembly 198656630 198657140 81918 81408 NC_060927.1 NT_187532.1 95.5 True indel: indel (> 5bp) 198655342 198656629 83249 81964 NC_060927.1 NT_187532.1 99.07 True local misassembly 198650755 198652014 86109 84850 NC_060927.1 NT_187532.1 99.44 True indel: indel (> 5bp) 198649304 198650730 87535 86110 NC_060927.1 NT_187532.1 99.37 True indel: indel (> 5bp) 198641023 198649274 95780 87536 NC_060927.1 NT_187532.1 98.93 True local misassembly 198634824 198641022 102491 96294 NC_060927.1 NT_187532.1 99.53 True indel: indel (> 5bp) 198606935 198634823 130435 102517 NC_060927.1 NT_187532.1 99.46 True indel: indel (> 5bp) 198606350 198606908 130994 130436 NC_060927.1 NT_187532.1 99.28 True local misassembly 198603567 198605715 133143 130995 NC_060927.1 NT_187532.1 99.63 True local misassembly 198601692 198603208 134805 133282 NC_060927.1 NT_187532.1 99.28 True indel: indel (> 5bp) 198598476 198601691 138052 134837 NC_060927.1 NT_187532.1 99.84 True local misassembly 198594595 198597848 141670 138417 NC_060927.1 NT_187532.1 99.69 True local misassembly 198592560 198594082 143193 141671 NC_060927.1 NT_187532.1 99.93 True indel: indel (> 5bp) 198587520 198592559 148368 143313 NC_060927.1 NT_187532.1 99.66 True local misassembly 198579729 198587519 157404 149614 NC_060927.1 NT_187532.1 99.97 True local misassembly 198577434 198578480 158451 157405 NC_060927.1 NT_187532.1 100.0 True indel: indel (> 5bp) 198555697 198577433 180226 158500 NC_060927.1 NT_187532.1 99.89 True indel: indel (> 5bp) 198545598 198555672 190321 180227 NC_060927.1 NT_187532.1 99.54 True indel: indel (> 5bp) 198541740 198545555 194135 190322 NC_060927.1 NT_187532.1 99.58 True indel: indel (> 5bp) 198540762 198541739 195202 194224 NC_060927.1 NT_187532.1 99.49 True local misassembly 198535242 198540272 200233 195203 NC_060927.1 NT_187532.1 99.82 True indel: indel (> 5bp) 198532850 198535241 202652 200257 NC_060927.1 NT_187532.1 99.58 True indel: indel (> 5bp) 198530297 198532849 205312 202761 NC_060927.1 NT_187532.1 99.41 True CONTIG NT_187532.1 205312 misassembled 200124664 200291526 162429 1 NC_060927.1 NT_187534.1 97.26 True CONTIG NT_187534.1 162429 correct 200779935 200967261 184404 1 NC_060927.1 NT_187539.1 98.25 True CONTIG NT_187539.1 184404 correct 21503759 21716466 1 220246 NC_060928.1 NT_187540.1 96.34 True CONTIG NT_187540.1 220246 correct 34487185 34852821 1 376187 NC_060928.1 NW_003315915.1 96.98 True CONTIG NW_003315915.1 376187 correct 59166272 59273928 1 111943 NC_060928.1 NT_187541.1 96.12 True CONTIG NT_187541.1 111943 correct 71747414 71840839 1 93430 NC_060928.1 NT_167250.2 99.9 True indel: indel (> 5bp) 71840884 71858424 93431 110951 NC_060928.1 NT_167250.2 99.72 True indel: indel (> 5bp) 71858425 71950858 111008 203468 NC_060928.1 NT_167250.2 99.59 True relocation, inconsistency = 117255 72068339 72130820 203694 266152 NC_060928.1 NT_167250.2 99.77 True indel: indel (> 5bp) 72130844 72173251 266153 308560 NC_060928.1 NT_167250.2 99.7 True local misassembly 72173606 72180865 308561 315820 NC_060928.1 NT_167250.2 99.74 True indel: indel (> 5bp) 72180866 72183854 315853 318857 NC_060928.1 NT_167250.2 98.74 True indel: indel (> 5bp) 72183883 72311457 318858 446449 NC_060928.1 NT_167250.2 99.74 True indel: indel (> 5bp) 72311458 72366129 446491 501156 NC_060928.1 NT_167250.2 99.83 True local misassembly 72366130 72436834 501477 572171 NC_060928.1 NT_167250.2 99.65 True indel: indel (> 5bp) 72436907 72451224 572172 586476 NC_060928.1 NT_167250.2 99.66 True CONTIG NT_167250.2 586476 misassembled 123468300 123621110 1 158965 NC_060928.1 NT_187544.1 95.96 True CONTIG NT_187544.1 158965 correct 159168167 159332694 1 164536 NC_060928.1 NW_003315914.1 99.65 True CONTIG NW_003315914.1 164536 correct 190266968 190288793 1 21830 NC_060928.1 NT_187542.1 99.95 True indel: indel (> 5bp) 190288794 190304716 21852 37786 NC_060928.1 NT_187542.1 99.64 True indel: indel (> 5bp) 190304717 190305990 37873 39148 NC_060928.1 NT_187542.1 98.98 True local misassembly 190311012 190311561 41129 41679 NC_060928.1 NT_187542.1 96.37 True local misassembly 190319748 190328153 45134 53563 NC_060928.1 NT_187542.1 99.17 True indel: indel (> 5bp) 190328154 190394435 53616 119912 NC_060928.1 NT_187542.1 99.8 True CONTIG NT_187542.1 119912 correct 191688618 191895305 1 205944 NC_060928.1 NT_187545.1 98.74 True CONTIG NT_187545.1 205944 correct 193026293 193272050 1 244096 NC_060928.1 NT_187543.1 95.62 True CONTIG NT_187543.1 244096 correct 549805 624944 73039 1 NC_060929.1 NT_187550.1 96.96 True local misassembly 496293 547460 126136 75540 NC_060929.1 NT_187550.1 98.61 True CONTIG NT_187550.1 126136 correct 886966 1067092 1 179043 NC_060929.1 NT_187548.1 96.98 True CONTIG NT_187548.1 179043 correct 1226139 1421466 195710 1 NC_060929.1 NT_187547.1 96.77 True CONTIG NT_187547.1 195710 correct 12622734 12680895 58176 1 NC_060929.1 NW_003315920.1 99.86 True relocation, inconsistency = -20152 12618329 12622733 82728 78329 NC_060929.1 NW_003315920.1 99.77 True CONTIG NW_003315920.1 82728 misassembled 29141739 29368640 1 226852 NC_060929.1 NW_003571036.1 99.63 True CONTIG NW_003571036.1 226852 correct 33920536 34085144 1 164549 NC_060929.1 NT_187551.1 99.73 True CONTIG NT_187551.1 164558 correct 70039431 70359658 1 316833 NC_060929.1 NW_003315917.2 97.48 True relocation, inconsistency = 611659 70971318 71550705 917513 316834 NC_060929.1 NW_003315917.2 95.21 True relocation, inconsistency = 505407 70455346 70465910 928072 917514 NC_060929.1 NW_003315917.2 99.61 True relocation, inconsistency = 982953 71448864 71665206 928073 1138692 NC_060929.1 NW_003315917.2 96.92 True relocation, scaffold gap is present, inconsistency = -44994 71720213 72095783 1238693 1612926 NC_060929.1 NW_003315917.2 99.44 True CONTIG NW_003315917.2 1612928 misassembled 95654221 95755463 101241 1 NC_060929.1 NW_003315918.1 99.95 True CONTIG NW_003315918.1 101241 correct 125795760 125897921 1 102187 NC_060929.1 NT_187549.1 99.79 True local misassembly 125897922 125946639 102510 151225 NC_060929.1 NT_187549.1 99.84 True relocation, inconsistency = -8030 125946640 125960101 159256 172708 NC_060929.1 NT_187549.1 99.67 True CONTIG NT_187549.1 172708 misassembled 162902538 163075915 173459 1 NC_060929.1 NW_003315919.1 99.72 True CONTIG NW_003315919.1 173459 correct 178409850 178544276 1 131892 NC_060929.1 NT_187546.1 95.08 True CONTIG NT_187546.1 131892 correct 28609198 28811178 1 201984 NC_060930.1 NT_167244.2 99.43 True fake: scaffold gap size wrong estimation (local) 28855706 28930407 246491 321335 NC_060930.1 NT_167244.2 99.6 True fake: scaffold gap size wrong estimation (local) 28959981 29051991 350875 442880 NC_060930.1 NT_167244.2 99.86 True fake: scaffold gap size wrong estimation (local) 29139728 29192276 530604 583167 NC_060930.1 NT_167244.2 99.81 True fake: scaffold gap size wrong estimation (local) 29296351 29547665 687360 938675 NC_060930.1 NT_167244.2 99.95 True fake: scaffold gap size wrong estimation (local) 29567008 29573418 957981 964390 NC_060930.1 NT_167244.2 99.97 True fake: scaffold gap size wrong estimation (local) 29630032 29830165 1023843 1223985 NC_060930.1 NT_167244.2 99.99 True fake: scaffold gap size wrong estimation (local) 29854794 29964217 1248613 1358035 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 29973959 29997466 1367782 1391289 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 30000403 30107844 1394224 1501665 NC_060930.1 NT_167244.2 99.99 True relocation, scaffold gap is present, inconsistency = -71458 30140978 30167301 1606257 1632579 NC_060930.1 NT_167244.2 99.99 True fake: scaffold gap size wrong estimation (local) 30183789 30321139 1649074 1786422 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 30371141 30418565 1836470 1883894 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 30522466 30594705 1987767 2060006 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 30749718 30754054 2214565 2218901 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 30839427 30945223 2304263 2410058 NC_060930.1 NT_167244.2 100.0 True relocation, scaffold gap is present, inconsistency = -14607 31331877 31392085 2811319 2871539 NC_060930.1 NT_167244.2 99.27 True fake: scaffold gap size wrong estimation (local) 31429009 31465186 2908536 2944741 NC_060930.1 NT_167244.2 99.8 True fake: scaffold gap size wrong estimation (local) 31607993 31693362 3087567 3172918 NC_060930.1 NT_167244.2 99.97 True fake: scaffold gap size wrong estimation (local) 31707209 31751027 3186584 3230407 NC_060930.1 NT_167244.2 99.98 True fake: scaffold gap size wrong estimation (local) 31925978 31940828 3405380 3420226 NC_060930.1 NT_167244.2 99.97 True fake: scaffold gap size wrong estimation (local) 31986164 32061740 3465573 3541150 NC_060930.1 NT_167244.2 99.98 True fake: scaffold gap size wrong estimation (local) 32164881 32209446 3644186 3688751 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 32213096 32267265 3692405 3746572 NC_060930.1 NT_167244.2 99.99 True fake: scaffold gap size wrong estimation (local) 32307019 32333675 3786299 3812954 NC_060930.1 NT_167244.2 100.0 True fake: scaffold gap size wrong estimation (local) 32336996 32361175 3816277 3840450 NC_060930.1 NT_167244.2 99.97 True fake: scaffold gap size wrong estimation (local) 32536916 32786951 4020687 4270450 NC_060930.1 NT_167244.2 98.71 True fake: scaffold gap size wrong estimation (local) 32840754 32956812 4324261 4440113 NC_060930.1 NT_167244.2 99.39 True fake: scaffold gap size wrong estimation (local) 33164679 33189078 4647970 4672374 NC_060930.1 NT_167244.2 99.82 True CONTIG NT_167244.2 4672374 misassembled 66927137 67102177 1 175808 NC_060930.1 NT_187555.1 99.12 True CONTIG NT_187555.1 175808 correct 69427315 69579555 1 152148 NC_060930.1 NT_187554.1 99.77 True CONTIG NT_187554.1 152148 correct 80527703 80652422 124736 1 NC_060930.1 NW_003315921.1 99.86 True CONTIG NW_003315921.1 124736 correct 128843733 129714285 1 870480 NC_060930.1 NT_187556.1 99.88 True CONTIG NT_187556.1 870480 correct 167590427 167656844 1 66404 NC_060930.1 NT_187557.1 99.84 True CONTIG NT_187557.1 75005 correct 170142090 170165800 1 23710 NC_060930.1 NW_004166862.2 99.62 True indel: indel (> 5bp) 170165873 170169142 23711 26980 NC_060930.1 NW_004166862.2 99.66 True local misassembly 170169143 170171617 27254 29728 NC_060930.1 NW_004166862.2 99.72 True indel: indel (> 5bp) 170171851 170185842 29786 43787 NC_060930.1 NW_004166862.2 99.76 True relocation, inconsistency = -29265 170188034 170188778 75244 75988 NC_060930.1 NW_004166862.2 99.6 True local misassembly 170189753 170190606 75989 76842 NC_060930.1 NW_004166862.2 99.88 True indel: indel (> 5bp) 170190607 170194714 76885 80992 NC_060930.1 NW_004166862.2 99.85 True local misassembly 170195559 170196070 81435 81951 NC_060930.1 NW_004166862.2 96.32 True local misassembly 170196327 170198608 81952 84233 NC_060930.1 NW_004166862.2 99.74 True indel: indel (> 5bp) 170198681 170199195 84234 84748 NC_060930.1 NW_004166862.2 97.67 True indel: indel (> 5bp) 170199196 170215298 84773 100892 NC_060930.1 NW_004166862.2 99.6 True local misassembly 170215516 170220516 100893 105893 NC_060930.1 NW_004166862.2 99.26 True indel: indel (> 5bp) 170220574 170258580 105894 143915 NC_060930.1 NW_004166862.2 99.65 True indel: indel (> 5bp) 170258581 170259180 143943 144546 NC_060930.1 NW_004166862.2 98.68 True indel: indel (> 5bp) 170259181 170260365 144574 145783 NC_060930.1 NW_004166862.2 96.86 True indel: indel (> 5bp) 170260366 170262132 145815 147575 NC_060930.1 NW_004166862.2 99.21 True indel: indel (> 5bp) 170262247 170263116 147631 148499 NC_060930.1 NW_004166862.2 99.54 True local misassembly 170263487 170280574 148500 165599 NC_060930.1 NW_004166862.2 99.66 True local misassembly 170282954 170283591 166117 166754 NC_060930.1 NW_004166862.2 99.53 True local misassembly 170283837 170285988 166755 168910 NC_060930.1 NW_004166862.2 99.68 True indel: indel (> 5bp) 170286040 170302924 168911 185823 NC_060930.1 NW_004166862.2 99.52 True CONTIG NW_004166862.2 185823 misassembled 171078721 171275748 1 197536 NC_060930.1 NT_187552.1 98.16 True CONTIG NT_187552.1 197536 correct 171631454 171735764 1 104314 NC_060930.1 NT_187553.1 99.93 True relocation, inconsistency = -9326 171736604 171753321 114480 131191 NC_060930.1 NT_187553.1 99.86 True indel: indel (> 5bp) 171753474 171757395 131192 135114 NC_060930.1 NT_187553.1 99.75 True local misassembly 171763102 171763683 135463 136044 NC_060930.1 NT_187553.1 100.0 True local misassembly 171770984 171792581 136548 158138 NC_060930.1 NT_187553.1 99.56 True local misassembly 171792986 171801636 158139 166789 NC_060930.1 NT_187553.1 99.49 True indel: indel (> 5bp) 171801662 171806825 166790 171953 NC_060930.1 NT_187553.1 99.83 True indel: indel (> 5bp) 171806826 171815570 172037 180781 NC_060930.1 NT_187553.1 99.81 True indel: indel (> 5bp) 171815571 171821309 180820 186556 NC_060930.1 NT_187553.1 99.62 True local misassembly 171821856 171830966 186557 195654 NC_060930.1 NT_187553.1 99.67 True indel: indel (> 5bp) 171830967 171834817 195832 199682 NC_060930.1 NT_187553.1 100.0 True indel: indel (> 5bp) 171834818 171837933 199713 202824 NC_060930.1 NT_187553.1 99.65 True local misassembly 171838685 171839222 203154 203695 NC_060930.1 NT_187553.1 99.26 True indel: indel (> 5bp) 171839343 171847120 203696 211473 NC_060930.1 NT_187553.1 99.99 True indel: indel (> 5bp) 171847160 171865500 211474 229814 NC_060930.1 NT_187553.1 99.98 True indel: indel (> 5bp) 171865501 171867767 229861 232127 NC_060930.1 NT_187553.1 100.0 True local misassembly 171868048 171868564 232128 232644 NC_060930.1 NT_187553.1 99.81 True local misassembly 171869642 171908780 232645 271782 NC_060930.1 NT_187553.1 99.98 True CONTIG NT_187553.1 271782 misassembled 144132 299215 1 157952 NC_060931.1 NT_187558.1 96.52 True CONTIG NT_187558.1 157952 correct 77792410 78001643 1 209586 NC_060931.1 NT_187561.1 99.39 True CONTIG NT_187561.1 209586 correct 104401684 104556536 158166 1 NC_060931.1 NT_187559.1 97.59 True CONTIG NT_187559.1 158166 correct 142949261 143019171 1 69934 NC_060931.1 NW_003315922.2 99.86 True local misassembly 143019172 143047607 75924 104354 NC_060931.1 NW_003315922.2 99.84 True indel: indel (> 5bp) 143047608 143062409 104397 119183 NC_060931.1 NW_003315922.2 99.86 True CONTIG NW_003315922.2 119183 correct 143353860 144443920 1 1111570 NC_060931.1 NT_187562.1 97.8 True CONTIG NT_187562.1 1111570 correct 149394835 149669712 1 271455 NC_060931.1 NT_187564.1 98.33 True CONTIG NT_187564.1 271455 correct 158885572 159010773 1 126434 NC_060931.1 NT_187563.1 96.1 True CONTIG NT_187563.1 126434 correct 159568475 159684829 115815 1 NC_060931.1 NT_187560.1 95.73 True local misassembly 159556994 159564778 124946 117147 NC_060931.1 NT_187560.1 99.6 True local misassembly 159553743 159556618 127822 124947 NC_060931.1 NT_187560.1 99.3 True local misassembly 159553092 159553742 128874 128224 NC_060931.1 NT_187560.1 99.69 True local misassembly 159546677 159552675 134877 128875 NC_060931.1 NT_187560.1 99.67 True local misassembly 159545640 159546446 135683 134878 NC_060931.1 NT_187560.1 97.77 True local misassembly 159473460 159541828 209988 141146 NC_060931.1 NT_187560.1 96.78 True CONTIG NT_187560.1 209988 correct 509982 653549 1 145606 NC_060932.1 NT_187572.1 98.17 True CONTIG NT_187572.1 145606 correct 653550 673566 1 20025 NC_060932.1 NT_187568.1 99.77 True indel: indel (> 5bp) 673594 674264 20026 20696 NC_060932.1 NT_187568.1 99.7 True indel: indel (> 5bp) 674265 686720 20749 33204 NC_060932.1 NT_187568.1 99.77 True local misassembly 687223 688133 33205 34115 NC_060932.1 NT_187568.1 99.89 True indel: indel (> 5bp) 688134 721405 34184 67461 NC_060932.1 NT_187568.1 99.92 True local misassembly 721984 740867 67462 86345 NC_060932.1 NT_187568.1 99.93 True indel: indel (> 5bp) 740906 758194 86346 103632 NC_060932.1 NT_187568.1 99.79 True local misassembly 758195 770454 103833 116077 NC_060932.1 NT_187568.1 99.62 True local misassembly 771015 771568 116266 116819 NC_060932.1 NT_187568.1 97.47 True local misassembly 772470 784481 116820 128835 NC_060932.1 NT_187568.1 99.66 True local misassembly 785143 791858 134800 141524 NC_060932.1 NT_187568.1 99.64 True local misassembly 792118 805684 141525 155091 NC_060932.1 NT_187568.1 99.93 True local misassembly 806130 813117 158779 165762 NC_060932.1 NT_187568.1 99.87 True local misassembly 813503 822868 165763 175128 NC_060932.1 NT_187568.1 99.89 True local misassembly 824663 829125 176349 180811 NC_060932.1 NT_187568.1 99.6 True indel: indel (> 5bp) 829126 832317 180902 184093 NC_060932.1 NT_187568.1 99.69 True indel: indel (> 5bp) 832667 878224 184521 230078 NC_060932.1 NT_187568.1 99.89 True indel: indel (> 5bp) 878225 879391 230132 231298 NC_060932.1 NT_187568.1 99.91 True indel: indel (> 5bp) 879392 887152 231431 239191 NC_060932.1 NT_187568.1 99.82 True local misassembly 887605 888434 239192 240021 NC_060932.1 NT_187568.1 99.4 True indel: indel (> 5bp) 888583 889965 240022 241404 NC_060932.1 NT_187568.1 99.78 True indel: indel (> 5bp) 889966 891454 241493 242971 NC_060932.1 NT_187568.1 99.33 True indel: indel (> 5bp) 891455 893070 243144 244759 NC_060932.1 NT_187568.1 99.63 True indel: indel (> 5bp) 893071 919487 244928 271363 NC_060932.1 NT_187568.1 99.8 True indel: indel (> 5bp) 919488 930838 271395 282736 NC_060932.1 NT_187568.1 99.72 True CONTIG NT_187568.1 282736 correct 1069139 1365898 1 292436 NC_060932.1 NT_187565.1 96.95 True CONTIG NT_187565.1 292436 correct 1595127 1603673 1 8550 NC_060932.1 NT_187576.1 99.78 True local misassembly 1604019 1609093 8551 13638 NC_060932.1 NT_187576.1 99.61 True indel: indel (> 5bp) 1609119 1610402 13639 14922 NC_060932.1 NT_187576.1 99.61 True local misassembly 1610667 1611490 14923 15747 NC_060932.1 NT_187576.1 99.15 True indel: indel (> 5bp) 1611491 1612030 15776 16321 NC_060932.1 NT_187576.1 96.89 True local misassembly 1612669 1629776 16378 33444 NC_060932.1 NT_187576.1 99.38 True indel: stretch of mismatches 1630124 1653425 33792 57092 NC_060932.1 NT_187576.1 99.97 True indel: indel (> 5bp) 1653515 1654651 57093 58229 NC_060932.1 NT_187576.1 99.38 True indel: indel (> 5bp) 1654829 1667297 58525 70997 NC_060932.1 NT_187576.1 99.79 True local misassembly 1668733 1722189 74039 127485 NC_060932.1 NT_187576.1 99.88 True indel: indel (> 5bp) 1722190 1729978 127521 135294 NC_060932.1 NT_187576.1 99.65 True indel: indel (> 5bp) 1730007 1731270 135295 136558 NC_060932.1 NT_187576.1 99.53 True indel: indel (> 5bp) 1731271 1733056 136706 138482 NC_060932.1 NT_187576.1 99.16 True indel: indel (> 5bp) 1733211 1746776 138483 152047 NC_060932.1 NT_187576.1 99.8 True indel: indel (> 5bp) 1746893 1747528 152048 152681 NC_060932.1 NT_187576.1 99.53 True local misassembly 1748478 1769366 153061 173945 NC_060932.1 NT_187576.1 99.85 True indel: indel (> 5bp) 1769598 1791833 174375 196630 NC_060932.1 NT_187576.1 99.61 True indel: indel (> 5bp) 1791857 1811060 196631 215828 NC_060932.1 NT_187576.1 99.78 True indel: indel (> 5bp) 1811087 1833582 215829 238318 NC_060932.1 NT_187576.1 99.68 True indel: indel (> 5bp) 1833657 1836518 238464 241326 NC_060932.1 NT_187576.1 99.3 True indel: indel (> 5bp) 1836519 1850741 241349 255587 NC_060932.1 NT_187576.1 99.7 True indel: indel (> 5bp) 1850782 1859492 255588 264299 NC_060932.1 NT_187576.1 99.78 True indel: indel (> 5bp) 1859493 1864002 264352 268860 NC_060932.1 NT_187576.1 99.38 True local misassembly 1865181 1867929 269466 272215 NC_060932.1 NT_187576.1 99.64 True indel: indel (> 5bp) 1867930 1899359 272261 303682 NC_060932.1 NT_187576.1 99.78 True indel: indel (> 5bp) 1899360 1906461 303708 310809 NC_060932.1 NT_187576.1 99.96 True indel: indel (> 5bp) 1906462 1917684 310926 322147 NC_060932.1 NT_187576.1 99.8 True indel: indel (> 5bp) 1917751 1952884 322148 357292 NC_060932.1 NT_187576.1 99.62 True local misassembly 1952885 1969849 357557 374530 NC_060932.1 NT_187576.1 99.56 True local misassembly 1975251 1980907 374531 380206 NC_060932.1 NT_187576.1 99.38 True indel: indel (> 5bp) 1980908 1984234 380229 383555 NC_060932.1 NT_187576.1 99.7 True indel: indel (> 5bp) 1984235 1992919 383642 392322 NC_060932.1 NT_187576.1 99.84 True indel: indel (> 5bp) 1992920 2016748 392351 416169 NC_060932.1 NT_187576.1 99.74 True indel: indel (> 5bp) 2016749 2027789 416262 427293 NC_060932.1 NT_187576.1 99.29 True relocation, inconsistency = 197652 2225675 2228697 430549 427527 NC_060932.1 NT_187576.1 99.8 True indel: indel (> 5bp) 2205006 2225636 451167 430550 NC_060932.1 NT_187576.1 99.48 True indel: indel (> 5bp) 2171019 2204918 485077 451168 NC_060932.1 NT_187576.1 99.35 True relocation, inconsistency = -15854 2161164 2170736 510783 501214 NC_060932.1 NT_187576.1 99.35 True local misassembly 2140132 2160842 531517 510784 NC_060932.1 NT_187576.1 99.44 True indel: indel (> 5bp) 2124270 2140081 547371 531518 NC_060932.1 NT_187576.1 98.9 True indel: indel (> 5bp) 2111849 2124189 559733 547372 NC_060932.1 NT_187576.1 99.12 True relocation, inconsistency = 22905 2147095 2571114 559734 985506 NC_060932.1 NT_187576.1 98.98 True CONTIG NT_187576.1 985506 misassembled 12658150 12683889 25698 1 NC_060932.1 NT_187570.1 98.66 True local misassembly 12501761 12655491 179420 25699 NC_060932.1 NT_187570.1 99.88 True indel: indel (> 5bp) 12500181 12501737 180978 179421 NC_060932.1 NT_187570.1 99.81 True relocation, inconsistency = -9468 12421797 12500180 268850 190447 NC_060932.1 NT_187570.1 99.38 True relocation, inconsistency = 45876 12344549 12375920 300230 268851 NC_060932.1 NT_187570.1 99.54 True CONTIG NT_187570.1 300230 misassembled 39371461 39651688 1 280328 NC_060932.1 NT_187577.1 99.87 True relocation, inconsistency = 155285 39806975 40151078 280330 624492 NC_060932.1 NT_187577.1 99.84 True CONTIG NT_187577.1 624492 misassembled 57556231 57609081 1 52856 NC_060932.1 NT_187566.1 99.95 True relocation, inconsistency = 26908 57635990 57724937 52857 141812 NC_060932.1 NT_187566.1 99.99 True CONTIG NT_187566.1 141812 misassembled 129676305 130051345 1 374415 NC_060932.1 NT_187567.1 99.67 True CONTIG NT_187567.1 374415 correct 142454927 142588437 1 133535 NC_060932.1 NT_187574.1 99.67 True CONTIG NT_187574.1 133535 correct 142899049 142936398 1 36640 NC_060932.1 NT_187575.1 96.42 True CONTIG NT_187575.1 36640 correct 144153697 144307728 1 158983 NC_060932.1 NT_187573.1 95.93 True CONTIG NT_187573.1 158983 correct 144659257 144674320 1 15071 NC_060932.1 NT_187571.1 99.84 True indel: indel (> 5bp) 144674357 144706697 15072 47402 NC_060932.1 NT_187571.1 99.74 True indel: indel (> 5bp) 144706719 144708277 47403 48961 NC_060932.1 NT_187571.1 99.36 True indel: indel (> 5bp) 144708313 144767731 48962 108354 NC_060932.1 NT_187571.1 99.73 True relocation, inconsistency = 14216 144781948 144812464 108355 138841 NC_060932.1 NT_187571.1 99.64 True local misassembly 144812572 144816975 139319 143722 NC_060932.1 NT_187571.1 99.8 True indel: indel (> 5bp) 144817026 144819933 143723 146630 NC_060932.1 NT_187571.1 99.79 True local misassembly 144825976 144868049 146631 188686 NC_060932.1 NT_187571.1 99.71 True indel: indel (> 5bp) 144868078 144905272 188687 225877 NC_060932.1 NT_187571.1 99.87 True indel: indel (> 5bp) 144905300 144964892 225878 285446 NC_060932.1 NT_187571.1 99.86 True local misassembly 144965098 144985495 285447 305841 NC_060932.1 NT_187571.1 99.97 True CONTIG NT_187571.1 305841 misassembled 145798960 145931268 1 132244 NC_060932.1 NT_187569.1 99.57 True CONTIG NT_187569.1 132244 correct 7431620 7446477 1 14844 NC_060933.1 NW_003315928.1 99.61 True relocation, inconsistency = -20946 7425532 7573744 14845 162988 NC_060933.1 NW_003315928.1 99.73 True CONTIG NW_003315928.1 162988 misassembled 81593193 81601472 1 8281 NC_060933.1 NW_003315929.1 99.28 True relocation, inconsistency = -21056 81580417 81643732 8282 71551 NC_060933.1 NW_003315929.1 99.79 True CONTIG NW_003315929.1 71551 misassembled 82190936 82356122 1 171286 NC_060933.1 NW_003315930.1 96.2 True CONTIG NW_003315930.1 171286 correct 100333140 100354081 1 20938 NC_060933.1 NW_003315931.1 99.73 True relocation, inconsistency = -11123 100354082 100382082 32062 60032 NC_060933.1 NW_003315931.1 99.54 True CONTIG NW_003315931.1 60032 misassembled 113120785 113550270 1 439082 NC_060933.1 NT_187578.1 97.63 True CONTIG NT_187578.1 439082 correct 27315728 27346905 1 31177 NC_060934.1 NW_003315934.1 99.98 True relocation, inconsistency = -47301 27346906 27412932 78479 144440 NC_060934.1 NW_003315934.1 99.86 True indel: indel (> 5bp) 27412968 27431366 144441 162840 NC_060934.1 NW_003315934.1 99.52 True indel: indel (> 5bp) 27431400 27437527 162841 168966 NC_060934.1 NW_003315934.1 99.71 True indel: indel (> 5bp) 27437590 27447882 168967 179254 NC_060934.1 NW_003315934.1 99.83 True CONTIG NW_003315934.1 179254 misassembled 42979466 43053424 1 73959 NC_060934.1 NT_187579.1 99.97 True local misassembly 43054283 43055424 74606 75742 NC_060934.1 NT_187579.1 99.21 True indel: indel (> 5bp) 43055448 43068410 75743 88712 NC_060934.1 NT_187579.1 99.84 True indel: indel (> 5bp) 43068457 43070747 88713 91005 NC_060934.1 NT_187579.1 99.87 True indel: indel (> 5bp) 43070748 43076670 91027 96950 NC_060934.1 NT_187579.1 99.9 True indel: indel (> 5bp) 43076693 43083641 96951 103899 NC_060934.1 NT_187579.1 99.71 True relocation, inconsistency = 15239 43098881 43156052 103900 161085 NC_060934.1 NT_187579.1 99.95 True indel: indel (> 5bp) 43156081 43176515 161086 181496 NC_060934.1 NT_187579.1 99.87 True CONTIG NT_187579.1 181496 misassembled 46056261 46223269 1 166969 NC_060934.1 NW_003315935.1 99.73 True relocation, inconsistency = -16041 46223270 46228644 183011 188381 NC_060934.1 NW_003315935.1 99.24 True indel: indel (> 5bp) 46228645 46272896 188422 232684 NC_060934.1 NW_003315935.1 99.65 True indel: indel (> 5bp) 46272897 46319504 232725 279316 NC_060934.1 NW_003315935.1 99.82 True indel: indel (> 5bp) 46319505 46349961 279345 309802 NC_060934.1 NW_003315935.1 99.9 True CONTIG NW_003315935.1 309802 misassembled 515642 728124 1 209250 NC_060935.1 NT_187586.1 97.29 True CONTIG NT_187586.1 210133 correct 1598323 1780394 1 177092 NC_060935.1 NT_187584.1 96.24 True CONTIG NT_187584.1 177092 correct 2857181 2953078 1 96016 NC_060935.1 NT_187585.1 99.45 True indel: indel (> 5bp) 2953215 3155049 96164 296868 NC_060935.1 NT_187585.1 98.82 True CONTIG NT_187585.1 296895 correct 7837498 7855224 1 17704 NC_060935.1 NT_187583.1 99.14 True indel: indel (> 5bp) 7855246 7872409 17705 34867 NC_060935.1 NT_187583.1 99.36 True relocation, inconsistency = 10126 7882536 8009115 34868 161467 NC_060935.1 NT_187583.1 99.79 True indel: indel (> 5bp) 8009142 8051730 161468 204059 NC_060935.1 NT_187583.1 99.89 True CONTIG NT_187583.1 204059 misassembled 25304388 25458736 1 154407 NC_060935.1 NW_003315936.1 99.66 True CONTIG NW_003315936.1 154407 correct 56127608 56320558 1 200998 NC_060935.1 NW_003871073.1 95.83 True CONTIG NW_003871073.1 200998 correct 56631258 56822675 1 191409 NC_060935.1 NW_003871074.1 99.81 True CONTIG NW_003871074.1 191409 correct 69177614 69245972 1 67707 NC_060935.1 NT_187582.1 98.9 True CONTIG NT_187582.1 67707 correct 134818055 135010711 1 186169 NC_060935.1 NT_187581.1 96.25 True CONTIG NT_187581.1 186169 correct 4015 12430 1035 9410 NC_060936.1 NW_003571049.1 97.9 True indel: indel (> 5bp) 12501 13922 9411 10832 NC_060936.1 NW_003571049.1 98.24 True local misassembly 13988 27158 12922 26098 NC_060936.1 NW_003571049.1 98.02 True local misassembly 30218 37624 26099 33494 NC_060936.1 NW_003571049.1 97.75 True local misassembly 37967 47651 33495 43183 NC_060936.1 NW_003571049.1 98.89 True local misassembly 47652 64628 49534 66522 NC_060936.1 NW_003571049.1 99.02 True indel: indel (> 5bp) 64708 96063 66523 97877 NC_060936.1 NW_003571049.1 99.81 True local misassembly 96850 136595 97878 137626 NC_060936.1 NW_003571049.1 99.84 True indel: indel (> 5bp) 136596 144029 137657 145090 NC_060936.1 NW_003571049.1 99.72 True indel: indel (> 5bp) 144030 156033 145248 157255 NC_060936.1 NW_003571049.1 99.77 True local misassembly 159371 169429 157256 167313 NC_060936.1 NW_003571049.1 99.73 True CONTIG NW_003571049.1 167313 correct 10674376 10733920 1 59538 NC_060936.1 NW_003571050.1 99.85 True indel: indel (> 5bp) 10733921 10744453 59564 70078 NC_060936.1 NW_003571050.1 99.55 True indel: indel (> 5bp) 10744478 10755545 70079 81151 NC_060936.1 NW_003571050.1 99.89 True indel: indel (> 5bp) 10755546 10899445 81215 225130 NC_060936.1 NW_003571050.1 99.83 True local misassembly 10899756 10928427 225131 253793 NC_060936.1 NW_003571050.1 99.45 True local misassembly 10930284 10940818 253794 264330 NC_060936.1 NW_003571050.1 99.71 True relocation, inconsistency = -37781 10940819 11004870 302112 366158 NC_060936.1 NW_003571050.1 99.7 True indel: indel (> 5bp) 11004871 11037576 366212 398925 NC_060936.1 NW_003571050.1 99.44 True indel: indel (> 5bp) 11037611 11046849 399059 408271 NC_060936.1 NW_003571050.1 99.24 True CONTIG NW_003571050.1 408271 misassembled 11281354 11285463 4235 126 NC_060936.1 NT_187588.1 98.93 True indel: indel (> 5bp) 11262506 11281353 23159 4302 NC_060936.1 NT_187588.1 99.7 True local misassembly 11261348 11262505 24872 23715 NC_060936.1 NT_187588.1 99.83 True relocation, inconsistency = 39722 11206408 11221625 40090 24873 NC_060936.1 NT_187588.1 99.92 True CONTIG NT_187588.1 40090 misassembled 27969856 27982530 12677 1 NC_060936.1 NW_003315938.1 99.93 True indel: indel (> 5bp) 27965840 27969855 16734 12705 NC_060936.1 NW_003315938.1 99.58 True indel: indel (> 5bp) 27945244 27965817 37298 16735 NC_060936.1 NW_003315938.1 99.83 True local misassembly 27915223 27945243 73389 43358 NC_060936.1 NW_003315938.1 99.71 True indel: indel (> 5bp) 27867773 27915194 120804 73390 NC_060936.1 NW_003315938.1 99.96 True CONTIG NW_003315938.1 120804 correct 30985984 31223877 1 238139 NC_060936.1 NT_187587.1 99.72 True CONTIG NT_187587.1 238139 correct 57901100 58070544 169178 1 NC_060936.1 NW_003315939.2 99.58 True CONTIG NW_003315939.2 169178 correct 58909539 59048155 1 138655 NC_060936.1 NW_003315941.1 98.88 True CONTIG NW_003315941.1 138655 correct 101073321 101220075 152874 1 NC_060936.1 NW_003315942.2 95.7 True CONTIG NW_003315942.2 152874 correct 123825622 123947391 1 119498 NC_060936.1 NT_187590.1 97.67 True CONTIG NT_187590.1 119498 correct 126235984 126414239 5 184319 NC_060936.1 NW_003315940.1 96.6 True CONTIG NW_003315940.1 184319 correct 130360180 130375381 1 15202 NC_060936.1 NT_187589.1 99.59 True local misassembly 130376035 130417288 15352 56596 NC_060936.1 NT_187589.1 99.86 True local misassembly 130417787 130424003 57404 63633 NC_060936.1 NT_187589.1 99.57 True indel: indel (> 5bp) 130424004 130424508 63667 64171 NC_060936.1 NT_187589.1 100.0 True indel: indel (> 5bp) 130424509 130429189 64304 68984 NC_060936.1 NT_187589.1 99.79 True local misassembly 130429249 130429925 69465 70141 NC_060936.1 NT_187589.1 98.08 True local misassembly 130430553 130432239 74378 76061 NC_060936.1 NT_187589.1 99.59 True CONTIG NT_187589.1 76061 correct 131586336 131603417 1 17068 NC_060936.1 NT_187591.1 99.78 True indel: indel (> 5bp) 131603418 131620287 17107 33977 NC_060936.1 NT_187591.1 99.59 True relocation, inconsistency = -11073 131620396 131622707 45159 47471 NC_060936.1 NT_187591.1 99.61 True local misassembly 131628918 131631000 54036 56134 NC_060936.1 NT_187591.1 98.9 True CONTIG NT_187591.1 56134 misassembled 17912363 17981655 1 69328 NC_060937.1 NT_187594.1 99.55 True relocation, inconsistency = -19321 17981656 17991075 88650 98070 NC_060937.1 NT_187594.1 99.77 True indel: indel (> 5bp) 17991150 18069464 98071 176387 NC_060937.1 NT_187594.1 99.96 True local misassembly 18069465 18077646 182277 190473 NC_060937.1 NT_187594.1 99.15 True indel: indel (> 5bp) 18077673 18078884 190474 191684 NC_060937.1 NT_187594.1 99.5 True CONTIG NT_187594.1 191684 misassembled 24862276 25042562 180306 1 NC_060937.1 NT_187593.1 99.86 True CONTIG NT_187593.1 180306 correct 69563390 69667225 1 103832 NC_060937.1 NT_187597.1 99.78 True CONTIG NT_187597.1 103832 correct 88803181 88968244 1 169134 NC_060937.1 NT_187595.1 97.37 True CONTIG NT_187595.1 169134 correct 111426937 111439699 1 12780 NC_060937.1 NT_187592.1 99.7 True indel: indel (> 5bp) 111439752 111440510 12781 13551 NC_060937.1 NT_187592.1 97.41 True local misassembly 111441070 111443075 14450 16456 NC_060937.1 NT_187592.1 99.6 True indel: indel (> 5bp) 111443107 111522215 16457 95552 NC_060937.1 NT_187592.1 99.94 True local misassembly 111526088 111527425 96026 97363 NC_060937.1 NT_187592.1 98.65 True local misassembly 111529211 111529730 97653 98172 NC_060937.1 NT_187592.1 98.65 True local misassembly 111531627 111533175 98607 100155 NC_060937.1 NT_187592.1 96.84 True local misassembly 111536943 111538564 100387 102008 NC_060937.1 NT_187592.1 99.08 True indel: indel (> 5bp) 111538565 111539407 102111 102952 NC_060937.1 NT_187592.1 95.61 True local misassembly 111539646 111540597 102953 103904 NC_060937.1 NT_187592.1 97.58 True local misassembly 111542163 111542808 104043 104688 NC_060937.1 NT_187592.1 98.92 True local misassembly 111544279 111545487 104969 106177 NC_060937.1 NT_187592.1 97.93 True local misassembly 111548604 111549335 107151 107882 NC_060937.1 NT_187592.1 99.32 True indel: indel (> 5bp) 111549438 111550287 107883 108732 NC_060937.1 NT_187592.1 98.94 True local misassembly 111553231 111553814 109161 109744 NC_060937.1 NT_187592.1 99.32 True local misassembly 111554461 111554988 109745 110272 NC_060937.1 NT_187592.1 96.59 True indel: indel (> 5bp) 111555149 111556022 110297 111170 NC_060937.1 NT_187592.1 99.2 True local misassembly 111556227 111557061 111171 112005 NC_060937.1 NT_187592.1 97.49 True indel: indel (> 5bp) 111557096 111564879 112006 119790 NC_060937.1 NT_187592.1 99.11 True indel: indel (> 5bp) 111564982 111585635 119791 140438 NC_060937.1 NT_187592.1 99.71 True local misassembly 111585965 111588011 140439 142486 NC_060937.1 NT_187592.1 99.56 True local misassembly 111588686 111630280 142487 184081 NC_060937.1 NT_187592.1 99.89 True indel: indel (> 5bp) 111630281 111692113 184116 245947 NC_060937.1 NT_187592.1 99.88 True indel: indel (> 5bp) 111692147 111695171 245948 248972 NC_060937.1 NT_187592.1 99.93 True indel: indel (> 5bp) 111695208 111697065 248973 250830 NC_060937.1 NT_187592.1 99.89 True indel: indel (> 5bp) 111697066 111753052 250932 306913 NC_060937.1 NT_187592.1 99.82 True CONTIG NT_187592.1 306913 correct 112936869 112972880 580 37287 NC_060937.1 NT_187596.1 96.67 True CONTIG NT_187596.1 37287 correct 85761116 86083871 1 322166 NC_060938.1 NT_187598.1 99.56 True CONTIG NT_187598.1 322166 correct 87117195 87687292 1 574531 NC_060938.1 NT_187601.1 98.93 True indel: stretch of mismatches 87687370 88624060 574609 1511111 NC_060938.1 NT_187601.1 99.77 True CONTIG NT_187601.1 1511111 correct 98691625 98865663 1 180703 NC_060938.1 NT_187599.1 95.69 True CONTIG NT_187599.1 180703 correct 99784471 99889247 1 104483 NC_060938.1 NT_187600.1 98.79 True relocation, inconsistency = 19699 99909217 99965629 104754 161478 NC_060938.1 NT_187600.1 97.77 True fake: not a misassembly (possible transposable element) 99965700 99970298 166086 161479 NC_060938.1 NT_187600.1 95.38 True fake: not a misassembly (possible transposable element) 99970087 100346568 166087 544793 NC_060938.1 NT_187600.1 98.75 True local misassembly 100384314 100413349 580638 609671 NC_060938.1 NT_187600.1 99.44 True indel: indel (> 5bp) 100413674 100502688 609876 698902 NC_060938.1 NT_187600.1 99.83 True indel: indel (> 5bp) 100502689 100510941 698939 707191 NC_060938.1 NT_187600.1 99.93 True indel: indel (> 5bp) 100510942 100653021 707218 849314 NC_060938.1 NT_187600.1 99.79 True local misassembly 100653365 100656552 849315 852502 NC_060938.1 NT_187600.1 99.47 True relocation, inconsistency = 24705 100681258 100777723 852503 948979 NC_060938.1 NT_187600.1 99.81 True indel: indel (> 5bp) 100777747 100793881 948980 965112 NC_060938.1 NT_187600.1 99.91 True indel: indel (> 5bp) 100793960 100818836 965113 989986 NC_060938.1 NT_187600.1 99.87 True indel: indel (> 5bp) 100818837 100851385 990037 1022598 NC_060938.1 NT_187600.1 99.53 True indel: indel (> 5bp) 100851446 101015420 1022599 1186581 NC_060938.1 NT_187600.1 99.73 True indel: indel (> 5bp) 101015421 101026843 1186623 1198046 NC_060938.1 NT_187600.1 99.98 True local misassembly 101029080 101039327 1198047 1208303 NC_060938.1 NT_187600.1 99.62 True relocation, inconsistency = -46898 101039328 101135512 1255202 1351393 NC_060938.1 NT_187600.1 99.85 True CONTIG NT_187600.1 1351393 misassembled 18585035 19062249 1 478999 NC_060939.1 NT_187602.1 98.94 True CONTIG NT_187602.1 478999 correct 20027603 20290834 1 263054 NC_060939.1 NT_187604.1 98.86 True CONTIG NT_187604.1 263054 correct 20574815 20719263 1 143348 NC_060939.1 NT_187603.1 98.15 True local misassembly 20720762 20907316 144903 324032 NC_060939.1 NT_187603.1 95.38 True CONTIG NT_187603.1 327382 correct 26054805 26165555 1 110767 NC_060939.1 NW_003315943.1 99.94 True relocation, inconsistency = 22800 26188356 26220214 110768 142628 NC_060939.1 NW_003315943.1 99.91 True local misassembly 26220215 26286603 143028 209439 NC_060939.1 NW_003315943.1 99.92 True indel: indel (> 5bp) 26286604 26373657 209468 296527 NC_060939.1 NW_003315943.1 99.74 True CONTIG NW_003315943.1 296527 misassembled 42484635 42721059 1 244917 NC_060939.1 NT_187605.1 95.99 True CONTIG NT_187605.1 244917 correct 63717607 64106471 1 388773 NC_060939.1 NW_003315944.2 99.68 True CONTIG NW_003315944.2 388773 correct 80154103 80203586 1 49502 NC_060939.1 NT_187606.1 99.81 True relocation, inconsistency = -78957 80203587 80209104 128460 133978 NC_060939.1 NT_187606.1 99.82 True indel: indel (> 5bp) 80209147 80309199 134105 234142 NC_060939.1 NT_187606.1 99.59 True indel: indel (> 5bp) 80309239 80321515 234143 246446 NC_060939.1 NT_187606.1 99.32 True indel: indel (> 5bp) 80321516 80346035 246471 270983 NC_060939.1 NT_187606.1 99.77 True indel: indel (> 5bp) 80346059 80365836 270984 290757 NC_060939.1 NT_187606.1 99.67 True local misassembly 80365837 80388091 291025 313288 NC_060939.1 NT_187606.1 99.54 True local misassembly 80388448 80390755 313399 315686 NC_060939.1 NT_187606.1 98.87 True indel: indel (> 5bp) 80390793 80506004 315687 430880 NC_060939.1 NT_187606.1 99.93 True CONTIG NT_187606.1 430880 misassembled 397100 534602 1 134193 NC_060940.1 NT_187610.1 95.46 True CONTIG NT_187610.1 134193 correct 1887690 1953824 1 63982 NC_060940.1 NT_187609.1 96.47 True CONTIG NT_187609.1 63982 correct 4326937 4560001 1 232857 NC_060940.1 NT_187608.1 99.39 True CONTIG NT_187608.1 232857 correct 14464754 14814769 1 350145 NC_060940.1 NT_187607.1 99.74 True relocation, inconsistency = 302639 15117409 15317283 548815 350146 NC_060940.1 NT_187607.1 98.38 True local misassembly 14928616 15116748 742161 554052 NC_060940.1 NT_187607.1 99.67 True local misassembly 14893159 14926113 776836 743873 NC_060940.1 NT_187607.1 99.87 True relocation, inconsistency = 12467 14938581 15031458 776837 869751 NC_060940.1 NT_187607.1 99.86 True relocation, inconsistency = 23002 14814770 14915578 970511 869752 NC_060940.1 NT_187607.1 99.35 True relocation, inconsistency = 401705 15317284 17004881 970512 2659700 NC_060940.1 NT_187607.1 99.19 True CONTIG NT_187607.1 2659700 misassembled 61593310 61615851 22540 1 NC_060940.1 NW_003315945.1 99.5 True relocation, inconsistency = -22236 61593616 61763562 22541 192462 NC_060940.1 NW_003315945.1 99.84 True CONTIG NW_003315945.1 192462 misassembled 74936433 75026523 89672 1 NC_060940.1 NW_003315946.1 99.43 True CONTIG NW_003315946.1 89672 correct 150551318 150554548 3225 1 NC_060933.1 NW_003315952.3 98.98 True local misassembly 150547740 150549961 5446 3226 NC_060933.1 NW_003315952.3 99.05 True indel: indel (> 5bp) 150535823 150547739 17393 5479 NC_060933.1 NW_003315952.3 99.2 True indel: indel (> 5bp) 150523041 150535822 30219 17432 NC_060933.1 NW_003315952.3 99.34 True indel: indel (> 5bp) 150500046 150523040 53320 30363 NC_060933.1 NW_003315952.3 99.01 True translocation 2193 5478 53566 56853 NC_060941.1 NW_003315952.3 98.94 True local misassembly 10203 11388 56854 58039 NC_060941.1 NW_003315952.3 98.57 True local misassembly 12208 16274 58040 62105 NC_060941.1 NW_003315952.3 98.72 True local misassembly 20325 21251 62435 63361 NC_060941.1 NW_003315952.3 98.38 True local misassembly 22049 22803 63362 64116 NC_060941.1 NW_003315952.3 98.54 True local misassembly 23602 24316 64117 64831 NC_060941.1 NW_003315952.3 98.18 True local misassembly 26140 28317 64832 67009 NC_060941.1 NW_003315952.3 98.81 True local misassembly 31509 32581 67010 68082 NC_060941.1 NW_003315952.3 99.07 True local misassembly 33608 41815 68083 76288 NC_060941.1 NW_003315952.3 99.66 True indel: indel (> 5bp) 41816 46203 76376 80763 NC_060941.1 NW_003315952.3 99.68 True indel: indel (> 5bp) 46494 59520 81205 94263 NC_060941.1 NW_003315952.3 99.39 True indel: indel (> 5bp) 59595 72465 94264 107133 NC_060941.1 NW_003315952.3 99.8 True local misassembly 72953 75088 107813 109948 NC_060941.1 NW_003315952.3 99.86 True local misassembly 75089 94977 110793 130689 NC_060941.1 NW_003315952.3 99.82 True local misassembly 95661 96185 130690 131214 NC_060941.1 NW_003315952.3 100.0 True indel: indel (> 5bp) 96213 102193 131215 137195 NC_060941.1 NW_003315952.3 99.95 True local misassembly 102751 106220 137196 140665 NC_060941.1 NW_003315952.3 99.65 True local misassembly 106221 111443 143742 148963 NC_060941.1 NW_003315952.3 99.69 True indel: indel (> 5bp) 111528 112167 148964 149603 NC_060941.1 NW_003315952.3 99.84 True local misassembly 112168 121052 152267 161151 NC_060941.1 NW_003315952.3 99.92 True indel: indel (> 5bp) 121053 122231 161185 162363 NC_060941.1 NW_003315952.3 99.24 True indel: indel (> 5bp) 122232 123988 162451 164204 NC_060941.1 NW_003315952.3 98.41 True local misassembly 123989 124627 164882 165520 NC_060941.1 NW_003315952.3 99.84 True indel: indel (> 5bp) 124628 127269 165691 168334 NC_060941.1 NW_003315952.3 97.96 True local misassembly 128055 139873 173080 184910 NC_060941.1 NW_003315952.3 99.7 True local misassembly 140596 141776 185374 186555 NC_060941.1 NW_003315952.3 98.82 True local misassembly 142000 148292 187829 194122 NC_060941.1 NW_003315952.3 99.4 True local misassembly 148581 159997 194123 205561 NC_060941.1 NW_003315952.3 99.35 True local misassembly 159998 160733 206031 206766 NC_060941.1 NW_003315952.3 97.83 True local misassembly 162105 162959 210085 210939 NC_060941.1 NW_003315952.3 98.48 True local misassembly 162960 163495 211877 212412 NC_060941.1 NW_003315952.3 99.07 True relocation, inconsistency = -13339 163942 170584 226198 232838 NC_060941.1 NW_003315952.3 99.59 True indel: indel (> 5bp) 170585 179142 232965 241515 NC_060941.1 NW_003315952.3 99.74 True local misassembly 183482 184377 241739 242634 NC_060941.1 NW_003315952.3 95.65 True local misassembly 185190 198658 242943 256421 NC_060941.1 NW_003315952.3 99.74 True local misassembly 199107 204957 258188 264039 NC_060941.1 NW_003315952.3 99.59 True local misassembly 205514 210111 264868 269467 NC_060941.1 NW_003315952.3 99.59 True local misassembly 210497 214812 270085 274401 NC_060941.1 NW_003315952.3 99.61 True local misassembly 215442 224724 274761 284043 NC_060941.1 NW_003315952.3 99.9 True local misassembly 231009 231569 285343 285903 NC_060941.1 NW_003315952.3 98.04 True local misassembly 235246 236006 287355 288115 NC_060941.1 NW_003315952.3 98.82 True local misassembly 236660 241159 288524 292996 NC_060941.1 NW_003315952.3 98.67 True indel: indel (> 5bp) 241160 254117 293018 305975 NC_060941.1 NW_003315952.3 99.85 True indel: indel (> 5bp) 254309 255598 305976 307265 NC_060941.1 NW_003315952.3 99.61 True indel: indel (> 5bp) 255661 259915 307266 311521 NC_060941.1 NW_003315952.3 99.84 True indel: indel (> 5bp) 259952 260561 311522 312131 NC_060941.1 NW_003315952.3 99.34 True local misassembly 261283 266048 312313 317081 NC_060941.1 NW_003315952.3 99.83 True indel: indel (> 5bp) 266049 273970 317120 325042 NC_060941.1 NW_003315952.3 99.86 True local misassembly 274458 276756 325043 327341 NC_060941.1 NW_003315952.3 99.13 True local misassembly 278856 282918 329577 333641 NC_060941.1 NW_003315952.3 99.43 True local misassembly 282919 283669 334554 335303 NC_060941.1 NW_003315952.3 97.2 True local misassembly 284132 285541 335489 336895 NC_060941.1 NW_003315952.3 98.87 True local misassembly 285542 287719 337226 339409 NC_060941.1 NW_003315952.3 98.17 True local misassembly 288054 293322 339410 344672 NC_060941.1 NW_003315952.3 99.22 True indel: indel (> 5bp) 293365 297319 344673 348628 NC_060941.1 NW_003315952.3 99.65 True indel: indel (> 5bp) 297320 302247 348682 353605 NC_060941.1 NW_003315952.3 99.72 True local misassembly 303310 309594 354140 360420 NC_060941.1 NW_003315952.3 99.75 True indel: indel (> 5bp) 309595 311831 360475 362711 NC_060941.1 NW_003315952.3 99.64 True indel: indel (> 5bp) 311832 324083 362744 375002 NC_060941.1 NW_003315952.3 99.8 True indel: indel (> 5bp) 324084 324744 375031 375691 NC_060941.1 NW_003315952.3 100.0 True CONTIG NW_003315952.3 375691 misassembled 847147 879742 1 32587 NC_060941.1 NT_187613.1 99.94 True local misassembly 880191 893595 32737 46154 NC_060941.1 NT_187613.1 99.56 True indel: indel (> 5bp) 893596 895789 46220 48413 NC_060941.1 NT_187613.1 99.77 True indel: indel (> 5bp) 895790 916515 48448 69174 NC_060941.1 NT_187613.1 99.93 True indel: indel (> 5bp) 916577 919282 69175 71880 NC_060941.1 NT_187613.1 99.93 True indel: indel (> 5bp) 919324 922185 71881 74742 NC_060941.1 NT_187613.1 99.9 True local misassembly 924282 931316 74743 81777 NC_060941.1 NT_187613.1 99.94 True indel: indel (> 5bp) 931350 941139 81778 91559 NC_060941.1 NT_187613.1 99.6 True local misassembly 941756 942648 91560 92452 NC_060941.1 NT_187613.1 98.32 True indel: indel (> 5bp) 942649 943409 92476 93236 NC_060941.1 NT_187613.1 99.34 True indel: indel (> 5bp) 943410 951381 93287 101251 NC_060941.1 NT_187613.1 99.51 True relocation, inconsistency = -7126 951784 958635 108780 115623 NC_060941.1 NT_187613.1 99.59 True indel: indel (> 5bp) 958636 1003513 115799 160678 NC_060941.1 NT_187613.1 99.84 True local misassembly 1005525 1007964 163189 165628 NC_060941.1 NT_187613.1 98.93 True indel: indel (> 5bp) 1008031 1017761 165629 175367 NC_060941.1 NT_187613.1 99.72 True local misassembly 1018119 1022625 175368 179875 NC_060941.1 NT_187613.1 99.31 True indel: indel (> 5bp) 1022626 1029455 179908 186741 NC_060941.1 NT_187613.1 99.82 True indel: indel (> 5bp) 1029610 1039590 187022 197011 NC_060941.1 NT_187613.1 99.42 True local misassembly 1039898 1045439 197552 203095 NC_060941.1 NT_187613.1 99.75 True local misassembly 1047424 1050635 203244 206449 NC_060941.1 NT_187613.1 99.72 True indel: indel (> 5bp) 1050734 1052071 206450 207787 NC_060941.1 NT_187613.1 99.93 True local misassembly 1052278 1061642 207788 217155 NC_060941.1 NT_187613.1 99.78 True indel: indel (> 5bp) 1062187 1083463 217566 238838 NC_060941.1 NT_187613.1 99.72 True relocation, inconsistency = 104735 1188199 1338053 238839 391357 NC_060941.1 NT_187613.1 98.0 True CONTIG NT_187613.1 391357 misassembled 1458675 1656437 1 196688 NC_060941.1 NT_187611.1 98.41 True CONTIG NT_187611.1 196688 correct 36713407 37341285 1 628221 NC_060941.1 NT_187614.1 99.72 True relocation, inconsistency = 1535909 38877195 38906565 657560 628222 NC_060941.1 NT_187614.1 99.65 True relocation, inconsistency = -827624 37421107 39704813 657566 2877074 NC_060941.1 NT_187614.1 95.57 True CONTIG NT_187614.1 2877074 misassembled 41715054 41993251 1 278131 NC_060941.1 NW_003871091.1 99.89 True CONTIG NW_003871091.1 278131 correct 42092247 42162613 70345 1 NC_060941.1 NW_003871092.1 99.86 True CONTIG NW_003871092.1 70345 correct 42254444 42288465 34022 1 NC_060941.1 NW_003315953.2 99.92 True indel: indel (> 5bp) 42231414 42254443 57077 34047 NC_060941.1 NW_003315953.2 99.91 True relocation, inconsistency = -7305 42162614 42231413 133151 64383 NC_060941.1 NW_003315953.2 99.94 True CONTIG NW_003315953.2 133151 misassembled 46163263 46203616 1 40355 NC_060941.1 NT_167251.2 99.98 True indel: indel (> 5bp) 46203617 46287272 40381 124058 NC_060941.1 NT_167251.2 99.83 True indel: indel (> 5bp) 46287316 46355883 124059 192630 NC_060941.1 NT_167251.2 99.55 True relocation, inconsistency = 915333 47271217 47420387 341788 192631 NC_060941.1 NT_167251.2 99.75 True local misassembly 47217056 47271216 396313 342117 NC_060941.1 NT_167251.2 99.68 True indel: indel (> 5bp) 47202881 47217027 410467 396314 NC_060941.1 NT_167251.2 99.72 True indel: indel (> 5bp) 47179153 47202880 434293 410548 NC_060941.1 NT_167251.2 99.47 True local misassembly 47154172 47179152 459571 434575 NC_060941.1 NT_167251.2 99.28 True relocation, inconsistency = -34873 47127309 47154171 521339 494445 NC_060941.1 NT_167251.2 98.96 True indel: indel (> 5bp) 47116341 47127266 532266 521340 NC_060941.1 NT_167251.2 98.73 True indel: indel (> 5bp) 47115275 47116340 533374 532298 NC_060941.1 NT_167251.2 98.61 True indel: indel (> 5bp) 47114390 47114919 534340 533811 NC_060941.1 NT_167251.2 98.87 True local misassembly 47106113 47114389 543444 535168 NC_060941.1 NT_167251.2 99.23 True indel: indel (> 5bp) 47100248 47106112 549334 543466 NC_060941.1 NT_167251.2 99.2 True local misassembly 47095347 47099165 553153 549335 NC_060941.1 NT_167251.2 99.29 True indel: indel (> 5bp) 47008463 47095346 640129 553186 NC_060941.1 NT_167251.2 99.33 True local misassembly 46986691 47008148 661656 640130 NC_060941.1 NT_167251.2 99.17 True indel: indel (> 5bp) 46960979 46986626 687344 661657 NC_060941.1 NT_167251.2 99.23 True local misassembly 46957939 46960655 690062 687345 NC_060941.1 NT_167251.2 99.6 True indel: indel (> 5bp) 46953442 46957938 694582 690084 NC_060941.1 NT_167251.2 99.27 True indel: indel (> 5bp) 46945779 46953441 702268 694611 NC_060941.1 NT_167251.2 99.31 True indel: indel (> 5bp) 46938219 46945734 709760 702269 NC_060941.1 NT_167251.2 99.2 True local misassembly 46937067 46938218 713245 712097 NC_060941.1 NT_167251.2 99.05 True indel: indel (> 5bp) 46918252 46937066 732046 713273 NC_060941.1 NT_167251.2 99.22 True indel: indel (> 5bp) 46914625 46918227 735652 732047 NC_060941.1 NT_167251.2 99.17 True indel: indel (> 5bp) 46907062 46914584 743152 735653 NC_060941.1 NT_167251.2 99.22 True indel: indel (> 5bp) 46871224 46907061 779039 743184 NC_060941.1 NT_167251.2 99.41 True local misassembly 46848995 46870985 801020 779040 NC_060941.1 NT_167251.2 99.4 True indel: indel (> 5bp) 46831238 46848994 818839 801058 NC_060941.1 NT_167251.2 99.34 True indel: indel (> 5bp) 46808278 46831134 841684 818840 NC_060941.1 NT_167251.2 99.36 True indel: indel (> 5bp) 46803399 46808277 846589 841708 NC_060941.1 NT_167251.2 99.41 True indel: indel (> 5bp) 46788583 46803358 861367 846590 NC_060941.1 NT_167251.2 99.37 True indel: indel (> 5bp) 46777105 46788552 872789 861368 NC_060941.1 NT_167251.2 99.22 True indel: indel (> 5bp) 46775830 46777104 874100 872827 NC_060941.1 NT_167251.2 99.14 True indel: indel (> 5bp) 46765918 46775829 884096 874176 NC_060941.1 NT_167251.2 99.26 True indel: indel (> 5bp) 46759640 46765376 890222 884470 NC_060941.1 NT_167251.2 99.13 True indel: indel (> 5bp) 46640581 46759617 1009211 890223 NC_060941.1 NT_167251.2 99.41 True indel: indel (> 5bp) 46615107 46640580 1034760 1009266 NC_060941.1 NT_167251.2 99.38 True indel: indel (> 5bp) 46592174 46614982 1057549 1034761 NC_060941.1 NT_167251.2 99.41 True indel: indel (> 5bp) 46579315 46592149 1070401 1057550 NC_060941.1 NT_167251.2 99.29 True indel: indel (> 5bp) 46500528 46579242 1149110 1070402 NC_060941.1 NT_167251.2 99.41 True indel: indel (> 5bp) 46486945 46500495 1162660 1149111 NC_060941.1 NT_167251.2 99.68 True local misassembly 46447400 46486944 1203137 1163540 NC_060941.1 NT_167251.2 98.82 True relocation, inconsistency = -29409 46444915 46447399 1235022 1232547 NC_060941.1 NT_167251.2 98.27 True local misassembly 46440105 46444914 1243100 1238291 NC_060941.1 NT_167251.2 98.94 True relocation, inconsistency = -711256 47144223 47151360 1250245 1243101 NC_060941.1 NT_167251.2 98.98 True local misassembly 47127298 47139647 1262712 1250385 NC_060941.1 NT_167251.2 98.23 True indel: indel (> 5bp) 47119482 47127297 1270590 1262746 NC_060941.1 NT_167251.2 98.1 True indel: indel (> 5bp) 47118119 47119481 1271982 1270613 NC_060941.1 NT_167251.2 97.74 True indel: indel (> 5bp) 47115846 47118118 1274324 1272039 NC_060941.1 NT_167251.2 97.46 True relocation, scaffold gap is present, inconsistency = -37960 47100248 47103397 1327902 1324733 NC_060941.1 NT_167251.2 97.6 True local misassembly 47098361 47099165 1328707 1327903 NC_060941.1 NT_167251.2 97.14 True local misassembly 47069113 47098360 1358444 1329180 NC_060941.1 NT_167251.2 99.05 True local misassembly 47008463 47069112 1422567 1361911 NC_060941.1 NT_167251.2 99.31 True local misassembly 46997025 47008148 1433680 1422568 NC_060941.1 NT_167251.2 99.42 True relocation, inconsistency = -157232 47139021 47154193 1448926 1433744 NC_060941.1 NT_167251.2 97.76 True relocation, inconsistency = 39855 47093565 47099165 1448927 1454554 NC_060941.1 NT_167251.2 98.79 True local misassembly 47100248 47106112 1454555 1460415 NC_060941.1 NT_167251.2 98.81 True indel: indel (> 5bp) 47106113 47114393 1460437 1468696 NC_060941.1 NT_167251.2 98.96 True local misassembly 47115833 47123525 1469515 1477310 NC_060941.1 NT_167251.2 96.06 True relocation, inconsistency = 229322 47352880 47697728 1477343 1821992 NC_060941.1 NT_167251.2 99.63 True CONTIG NT_167251.2 1821992 misassembled 71184473 71209466 1 25006 NC_060941.1 NW_003315954.1 99.84 True local misassembly 71209787 71239759 25007 54980 NC_060941.1 NW_003315954.1 99.88 True local misassembly 71239760 71259401 61034 80677 NC_060941.1 NW_003315954.1 99.92 True indel: indel (> 5bp) 71259427 71337520 80678 158721 NC_060941.1 NW_003315954.1 99.82 True local misassembly 71337521 71396707 164812 223995 NC_060941.1 NW_003315954.1 99.86 True CONTIG NW_003315954.1 223995 correct 72457145 72692394 1 235827 NC_060941.1 NT_187615.1 99.01 True CONTIG NT_187615.1 235827 correct 73706695 73760658 1 53970 NC_060941.1 NT_187616.1 99.86 True relocation, inconsistency = 8066 73768725 73823516 53971 108763 NC_060941.1 NT_187616.1 99.59 True CONTIG NT_187616.1 108763 misassembled 78118818 78130697 1 11888 NC_060941.1 NW_003315955.1 99.75 True relocation, inconsistency = -16134 78114564 78192572 11889 90219 NC_060941.1 NW_003315955.1 99.23 True CONTIG NW_003315955.1 90219 misassembled 83942245 84124035 178921 1 NC_060941.1 NT_187612.1 97.28 True CONTIG NT_187612.1 178921 correct 43925875 43964793 38890 1 NC_060942.1 NT_187618.1 99.7 True indel: indel (> 5bp) 43925107 43925836 39818 39084 NC_060942.1 NT_187618.1 98.91 True local misassembly 43890274 43925106 79665 44797 NC_060942.1 NT_187618.1 99.62 True indel: indel (> 5bp) 43867284 43890273 102714 79720 NC_060942.1 NT_187618.1 99.76 True indel: indel (> 5bp) 43858147 43867171 111737 102715 NC_060942.1 NT_187618.1 99.84 True CONTIG NT_187618.1 111737 correct 50493942 50776556 1 289831 NC_060942.1 NW_003315956.1 97.34 True CONTIG NW_003315956.1 289831 correct 51865917 52024622 164789 1 NC_060942.1 NW_003315959.1 96.25 True CONTIG NW_003315959.1 164789 correct 67621778 67666359 1 44205 NC_060942.1 NW_003315960.1 98.93 True relocation, scaffold gap is present, inconsistency = -49280 67667100 67771132 94226 198278 NC_060942.1 NW_003315960.1 99.84 True CONTIG NW_003315960.1 198278 misassembled 73223264 73246201 22937 1 NC_060942.1 NW_003315957.1 99.87 True indel: indel (> 5bp) 73191066 73223263 55182 22972 NC_060942.1 NW_003315957.1 99.49 True relocation, inconsistency = -12888 73154583 73191065 104552 68071 NC_060942.1 NW_003315957.1 99.88 True CONTIG NW_003315957.1 104552 misassembled 78725465 78734787 1 9334 NC_060942.1 NW_003315958.1 99.65 True indel: indel (> 5bp) 78734976 78745201 9335 19581 NC_060942.1 NW_003315958.1 99.52 True indel: indel (> 5bp) 78745253 78746318 19582 20647 NC_060942.1 NW_003315958.1 99.06 True local misassembly 78749099 78752123 21338 24361 NC_060942.1 NW_003315958.1 99.07 True indel: indel (> 5bp) 78752247 78781348 24362 53495 NC_060942.1 NW_003315958.1 99.58 True local misassembly 78781830 78783513 53496 55179 NC_060942.1 NW_003315958.1 99.88 True indel: indel (> 5bp) 78783565 78841282 55180 112908 NC_060942.1 NW_003315958.1 99.76 True indel: indel (> 5bp) 78841477 78848577 112909 120009 NC_060942.1 NW_003315958.1 99.83 True local misassembly 78848578 78866932 120346 138693 NC_060942.1 NW_003315958.1 99.64 True relocation, inconsistency = -10106 78867623 78886099 149490 167950 NC_060942.1 NW_003315958.1 99.53 True CONTIG NW_003315958.1 167950 misassembled 79169439 79176807 1 7370 NC_060942.1 NW_003315961.1 99.8 True indel: indel (> 5bp) 79176808 79199698 7419 30297 NC_060942.1 NW_003315961.1 99.63 True indel: indel (> 5bp) 79199761 79249165 30298 79705 NC_060942.1 NW_003315961.1 99.92 True local misassembly 79250718 79252161 79933 81377 NC_060942.1 NW_003315961.1 98.06 True local misassembly 79255986 79256751 83245 84014 NC_060942.1 NW_003315961.1 95.06 True local misassembly 79258361 79259100 85102 85841 NC_060942.1 NW_003315961.1 99.05 True local misassembly 79262786 79280321 86659 104200 NC_060942.1 NW_003315961.1 99.79 True local misassembly 79280988 79282663 104645 106320 NC_060942.1 NW_003315961.1 97.73 True local misassembly 79283346 79283847 106781 107282 NC_060942.1 NW_003315961.1 98.21 True indel: indel (> 5bp) 79283922 79286470 107283 109831 NC_060942.1 NW_003315961.1 99.61 True local misassembly 79287815 79292042 109832 114059 NC_060942.1 NW_003315961.1 99.72 True local misassembly 79292644 79320539 114060 141949 NC_060942.1 NW_003315961.1 99.89 True indel: indel (> 5bp) 79320575 79338173 141950 159547 NC_060942.1 NW_003315961.1 99.88 True CONTIG NW_003315961.1 159547 correct 79818981 79839911 1 20937 NC_060942.1 NT_187617.1 99.85 True local misassembly 79840144 79841781 20938 22582 NC_060942.1 NT_187617.1 99.21 True indel: indel (> 5bp) 79841782 79856750 22619 37584 NC_060942.1 NT_187617.1 99.91 True indel: indel (> 5bp) 79856871 79862347 37585 43046 NC_060942.1 NT_187617.1 99.32 True indel: indel (> 5bp) 79862384 79866441 43047 47104 NC_060942.1 NT_187617.1 99.8 True indel: indel (> 5bp) 79866508 79873568 47105 54165 NC_060942.1 NT_187617.1 99.8 True indel: indel (> 5bp) 79873667 79874986 54166 55484 NC_060942.1 NT_187617.1 98.86 True local misassembly 79875459 79876016 55485 56042 NC_060942.1 NT_187617.1 97.13 True relocation, inconsistency = 7822 79887079 79887917 59283 60117 NC_060942.1 NT_187617.1 97.02 True local misassembly 79888822 79889345 60118 60638 NC_060942.1 NT_187617.1 96.18 True indel: indel (> 5bp) 79889466 79889994 60639 61167 NC_060942.1 NT_187617.1 96.79 True indel: indel (> 5bp) 79890175 79890758 61168 61753 NC_060942.1 NT_187617.1 95.05 True local misassembly 79893421 79895439 63241 65259 NC_060942.1 NT_187617.1 99.7 True indel: indel (> 5bp) 79895517 79896399 65260 66142 NC_060942.1 NT_187617.1 99.77 True indel: indel (> 5bp) 79896400 79906345 66190 76133 NC_060942.1 NT_187617.1 99.81 True local misassembly 79907847 79922410 76555 91116 NC_060942.1 NT_187617.1 99.58 True local misassembly 79922828 79958807 91665 127642 NC_060942.1 NT_187617.1 99.81 True local misassembly 79959736 79961739 127643 129646 NC_060942.1 NT_187617.1 99.75 True local misassembly 79962380 79966689 129807 134116 NC_060942.1 NT_187617.1 99.74 True local misassembly 79968074 79970340 134586 136852 NC_060942.1 NT_187617.1 99.82 True indel: indel (> 5bp) 79970341 79987912 137041 154624 NC_060942.1 NT_187617.1 99.77 True indel: indel (> 5bp) 79987949 79989922 154625 156598 NC_060942.1 NT_187617.1 99.8 True indel: indel (> 5bp) 79989923 79996213 156632 162922 NC_060942.1 NT_187617.1 99.84 True indel: indel (> 5bp) 79996214 80001261 162952 167999 NC_060942.1 NT_187617.1 99.78 True CONTIG NT_187617.1 167999 misassembled 775565 783595 1 8021 NC_060943.1 NT_187622.1 99.66 True indel: indel (> 5bp) 783848 790098 8076 14324 NC_060943.1 NT_187622.1 99.57 True local misassembly 791379 796232 14325 19146 NC_060943.1 NT_187622.1 99.05 True indel: indel (> 5bp) 796268 797498 19147 20377 NC_060943.1 NT_187622.1 99.51 True indel: indel (> 5bp) 797499 800108 20462 23063 NC_060943.1 NT_187622.1 98.89 True local misassembly 800324 807565 23064 30292 NC_060943.1 NT_187622.1 99.6 True indel: indel (> 5bp) 807566 820180 30345 42951 NC_060943.1 NT_187622.1 99.71 True indel: indel (> 5bp) 820181 822656 42976 45449 NC_060943.1 NT_187622.1 99.39 True local misassembly 822657 827910 45807 51051 NC_060943.1 NT_187622.1 98.72 True local misassembly 829459 830648 51652 52859 NC_060943.1 NT_187622.1 98.01 True indel: indel (> 5bp) 830649 834402 52896 56632 NC_060943.1 NT_187622.1 99.36 True indel: indel (> 5bp) 834473 835115 56633 57277 NC_060943.1 NT_187622.1 99.38 True local misassembly 838143 839382 58497 59724 NC_060943.1 NT_187622.1 98.87 True local misassembly 842623 844156 60201 61734 NC_060943.1 NT_187622.1 99.54 True CONTIG NT_187622.1 61734 correct 1072080 1124560 1 52969 NC_060943.1 NT_187621.1 97.88 True CONTIG NT_187621.1 52969 correct 20800944 20960589 1 159618 NC_060943.1 NW_003315962.1 99.07 True local misassembly 20961151 21180976 159814 385657 NC_060943.1 NW_003315962.1 96.29 True CONTIG NW_003315962.1 385657 correct 21786886 21797326 1 10447 NC_060943.1 NW_003315964.2 98.81 True relocation, inconsistency = -9478 21797327 21811989 19926 34582 NC_060943.1 NW_003315964.2 99.26 True indel: indel (> 5bp) 21812014 21915413 34583 137987 NC_060943.1 NW_003315964.2 99.81 True indel: indel (> 5bp) 21915414 21947500 138121 170222 NC_060943.1 NW_003315964.2 99.78 True CONTIG NW_003315964.2 170222 misassembled 22259246 22439300 188024 1 NC_060943.1 NW_003315965.1 95.33 True CONTIG NW_003315965.1 188024 correct 36672771 36828269 1 155864 NC_060943.1 NW_003315963.1 99.52 True CONTIG NW_003315963.1 155864 correct 36878086 36921917 1 42687 NC_060943.1 NT_187619.1 97.21 True CONTIG NT_187619.1 43156 correct 44277852 44501299 233762 1 NC_060943.1 NT_187620.1 95.1 True CONTIG NT_187620.1 233762 correct 57104135 57417968 1 309614 NC_060943.1 NW_003571054.1 98.28 True relocation, scaffold gap is present, inconsistency = 76249 57499420 57846098 314817 659062 NC_060943.1 NW_003571054.1 98.69 True local misassembly 57848423 57849885 661602 663061 NC_060943.1 NW_003571054.1 95.15 True indel: indel (> 5bp) 57849886 57853977 663087 667182 NC_060943.1 NW_003571054.1 96.53 True indel: indel (> 5bp) 57854067 57856997 667183 670114 NC_060943.1 NW_003571054.1 97.0 True local misassembly 57858741 57889266 670132 700652 NC_060943.1 NW_003571054.1 99.27 True fake: scaffold gap size wrong estimation (local) 57991575 58178808 800663 987716 NC_060943.1 NW_003571054.1 98.75 True CONTIG NW_003571054.1 987716 misassembled 17822243 17944577 1 128386 NC_060944.1 NW_003315966.2 95.13 True CONTIG NW_003315966.2 128386 correct 63676706 63797524 1 118774 NC_060944.1 NT_187623.1 97.72 True CONTIG NT_187623.1 118774 correct 65222385 65281974 1 58661 NC_060944.1 NT_187625.1 97.83 True CONTIG NT_187625.1 58661 correct 65916175 66095402 1 183433 NC_060944.1 NT_187624.1 95.07 True CONTIG NT_187624.1 183433 correct 12766881 12830812 1 63917 NC_060945.1 NW_003315967.2 99.88 True CONTIG NW_003315967.2 63917 correct 15501943 15665370 1 166743 NC_060945.1 NT_187628.1 96.38 True CONTIG NT_187628.1 166743 correct 15958711 16103396 1 143900 NC_060945.1 NT_187627.1 99.42 True CONTIG NT_187627.1 143900 correct 20470099 20574869 1 104765 NC_060945.1 NW_003315968.2 99.93 True local misassembly 20575161 20621841 104766 151446 NC_060945.1 NW_003315968.2 99.86 True local misassembly 20621842 20632512 158105 168778 NC_060945.1 NW_003315968.2 99.82 True indel: indel (> 5bp) 20632513 20650481 168846 186815 NC_060945.1 NW_003315968.2 99.81 True relocation, inconsistency = -11094 20650482 20653760 197910 201197 NC_060945.1 NW_003315968.2 99.27 True CONTIG NW_003315968.2 201197 misassembled 31135385 31138195 1 2811 NC_060945.1 NW_003315969.2 99.89 True indel: indel (> 5bp) 31138196 31175503 2896 40203 NC_060945.1 NW_003315969.2 99.91 True indel: indel (> 5bp) 31175528 31201010 40204 65699 NC_060945.1 NW_003315969.2 99.85 True local misassembly 31201011 31206104 69561 74653 NC_060945.1 NW_003315969.2 99.94 True CONTIG NW_003315969.2 74653 correct 31777690 31894394 1 116689 NC_060945.1 NW_003315970.2 99.94 True CONTIG NW_003315970.2 116689 correct 44519349 44540470 1 20112 NC_060945.1 NT_187626.1 95.17 True indel: indel (> 5bp) 44540832 44603877 20454 82692 NC_060945.1 NT_187626.1 98.41 True CONTIG NT_187626.1 82692 correct 22787163 23046961 1 259914 NC_060946.1 NT_187629.1 99.71 True CONTIG NT_187629.1 259914 correct 23776912 23963010 1 186262 NC_060946.1 NT_187632.1 99.58 True CONTIG NT_187632.1 186262 correct 24210833 24300931 1 90108 NC_060946.1 NT_187633.1 99.78 True local misassembly 24300932 24376525 92681 168317 NC_060946.1 NT_187633.1 99.72 True relocation, inconsistency = -37155 24376526 24393998 205473 222951 NC_060946.1 NT_187633.1 99.26 True indel: indel (> 5bp) 24393999 24475136 222992 304135 NC_060946.1 NT_187633.1 99.72 True CONTIG NT_187633.1 304135 misassembled 36144984 36402429 1 263666 NC_060946.1 NT_187630.1 97.58 True CONTIG NT_187630.1 263666 correct 37235151 37336663 1 101331 NC_060946.1 NT_187631.1 99.44 True CONTIG NT_187631.1 101331 correct 39354641 39432667 1 77979 NC_060946.1 NW_003315972.2 99.62 True relocation, inconsistency = 29965 39462633 39481572 77980 96924 NC_060946.1 NW_003315972.2 99.68 True CONTIG NW_003315972.2 96924 misassembled 42557239 42592176 1 34924 NC_060946.1 NW_003315971.2 99.75 True indel: indel (> 5bp) 42592177 42598817 34984 41627 NC_060946.1 NW_003315971.2 99.73 True indel: indel (> 5bp) 42598818 42605384 41656 48235 NC_060946.1 NW_003315971.2 99.24 True relocation, inconsistency = 12155 42617540 42698858 48236 129559 NC_060946.1 NW_003315971.2 99.86 True indel: indel (> 5bp) 42698859 42732065 129589 162811 NC_060946.1 NW_003315971.2 99.89 True CONTIG NW_003315971.2 162811 misassembled 149476 153808 1 4354 NC_060948.1 NT_187634.1 98.74 True local misassembly 154557 156550 4355 6347 NC_060948.1 NT_187634.1 97.89 True local misassembly 156788 157634 6348 7189 NC_060948.1 NT_187634.1 96.93 True local misassembly 157995 163196 7190 12373 NC_060948.1 NT_187634.1 98.94 True local misassembly 163762 174290 12374 22872 NC_060948.1 NT_187634.1 99.55 True indel: indel (> 5bp) 174315 177170 22873 25716 NC_060948.1 NT_187634.1 99.26 True indel: indel (> 5bp) 177171 177747 25744 26320 NC_060948.1 NT_187634.1 99.65 True indel: indel (> 5bp) 177829 191681 26321 40175 NC_060948.1 NT_187634.1 99.81 True indel: indel (> 5bp) 191919 193378 40276 41739 NC_060948.1 NT_187634.1 98.77 True indel: indel (> 5bp) 193379 198622 41799 47043 NC_060948.1 NT_187634.1 99.2 True local misassembly 202480 203962 47044 48525 NC_060948.1 NT_187634.1 99.06 True indel: indel (> 5bp) 203963 204555 48691 49283 NC_060948.1 NT_187634.1 98.99 True local misassembly 204556 206498 50109 52049 NC_060948.1 NT_187634.1 99.85 True indel: indel (> 5bp) 206536 214438 52050 59952 NC_060948.1 NT_187634.1 99.94 True indel: indel (> 5bp) 214492 245915 59953 91380 NC_060948.1 NT_187634.1 99.78 True indel: indel (> 5bp) 245916 253410 91407 98905 NC_060948.1 NT_187634.1 99.63 True local misassembly 253909 254746 99070 99907 NC_060948.1 NT_187634.1 99.76 True indel: indel (> 5bp) 254747 258253 100073 103579 NC_060948.1 NT_187634.1 99.8 True indel: indel (> 5bp) 258254 263449 103614 108796 NC_060948.1 NT_187634.1 99.44 True local misassembly 264035 265262 108797 110023 NC_060948.1 NT_187634.1 98.45 True local misassembly 265759 266327 110024 110592 NC_060948.1 NT_187634.1 99.65 True local misassembly 266652 268322 110695 112385 NC_060948.1 NT_187634.1 96.92 True indel: indel (> 5bp) 268323 271444 112459 115576 NC_060948.1 NT_187634.1 99.52 True local misassembly 275121 279001 116153 120011 NC_060948.1 NT_187634.1 98.76 True local misassembly 279002 292380 120391 133783 NC_060948.1 NT_187634.1 99.45 True local misassembly 292846 299100 133784 140059 NC_060948.1 NT_187634.1 98.73 True indel: indel (> 5bp) 299124 299696 140060 140631 NC_060948.1 NT_187634.1 97.73 True local misassembly 300232 304911 140632 145301 NC_060948.1 NT_187634.1 99.06 True local misassembly 305293 306953 145302 146966 NC_060948.1 NT_187634.1 99.22 True indel: indel (> 5bp) 306954 315905 147132 156105 NC_060948.1 NT_187634.1 99.67 True local misassembly 317343 326022 156106 164783 NC_060948.1 NT_187634.1 99.86 True local misassembly 331319 334255 165344 168268 NC_060948.1 NT_187634.1 99.01 True local misassembly 334256 347188 168666 181605 NC_060948.1 NT_187634.1 99.61 True indel: indel (> 5bp) 347285 347835 181606 182156 NC_060948.1 NT_187634.1 100.0 True local misassembly 348519 354248 182534 188266 NC_060948.1 NT_187634.1 99.49 True local misassembly 354809 362733 189006 196928 NC_060948.1 NT_187634.1 99.55 True local misassembly 363262 363812 198513 199063 NC_060948.1 NT_187634.1 99.09 True local misassembly 363813 373999 199284 209468 NC_060948.1 NT_187634.1 99.77 True indel: indel (> 5bp) 374062 375589 209469 210994 NC_060948.1 NT_187634.1 99.35 True local misassembly 380653 385152 211525 216017 NC_060948.1 NT_187634.1 99.13 True local misassembly 385477 387009 216018 217551 NC_060948.1 NT_187634.1 99.8 True indel: indel (> 5bp) 387034 388779 217552 219311 NC_060948.1 NT_187634.1 98.86 True indel: indel (> 5bp) 388780 395071 219351 225648 NC_060948.1 NT_187634.1 99.63 True indel: indel (> 5bp) 395072 407635 225772 238327 NC_060948.1 NT_187634.1 99.69 True local misassembly 409095 410422 239200 240524 NC_060948.1 NT_187634.1 99.55 True local misassembly 411022 419226 240525 248744 NC_060948.1 NT_187634.1 99.14 True indel: indel (> 5bp) 419370 424230 248745 253605 NC_060948.1 NT_187634.1 99.88 True indel: indel (> 5bp) 424293 438271 253606 267604 NC_060948.1 NT_187634.1 99.34 True indel: indel (> 5bp) 438357 455639 267605 284869 NC_060948.1 NT_187634.1 99.84 True CONTIG NT_187634.1 284869 correct 78421264 78529342 108083 1 NC_060947.1 NT_187635.1 99.88 True relocation, inconsistency = -12353 78415058 78421263 126626 120437 NC_060947.1 NT_187635.1 98.68 True indel: indel (> 5bp) 78397409 78414992 144206 126627 NC_060947.1 NT_187635.1 99.88 True CONTIG NT_187635.1 144206 misassembled 247778556 247788171 1 9609 NC_060925.1 NT_187646.1 99.53 True indel: indel (> 5bp) 247788172 247809501 9694 31028 NC_060925.1 NT_187646.1 99.54 True local misassembly 247809664 247829272 32959 52562 NC_060925.1 NT_187646.1 99.48 True local misassembly 247830189 247833986 54753 58566 NC_060925.1 NT_187646.1 99.03 True relocation, inconsistency = 8215 247842202 247842943 58567 59308 NC_060925.1 NT_187646.1 96.09 True relocation, inconsistency = 10600 247853544 247877897 59309 83652 NC_060925.1 NT_187646.1 99.59 True indel: indel (> 5bp) 247877898 247889495 83698 95289 NC_060925.1 NT_187646.1 99.1 True indel: indel (> 5bp) 247889559 247924224 95290 129928 NC_060925.1 NT_187646.1 99.34 True indel: indel (> 5bp) 247924225 247928131 129953 133875 NC_060925.1 NT_187646.1 98.39 True indel: indel (> 5bp) 247928170 247956523 133876 162212 NC_060925.1 NT_187646.1 99.36 True CONTIG NT_187646.1 162212 misassembled 90773914 90783462 1 9549 NC_060926.1 NT_187648.1 99.94 True relocation, inconsistency = -24726 90783463 90789935 34276 40744 NC_060926.1 NT_187648.1 99.69 True indel: indel (> 5bp) 90789963 90833710 40745 84459 NC_060926.1 NT_187648.1 99.61 True indel: indel (> 5bp) 90833711 90841151 84618 92071 NC_060926.1 NT_187648.1 99.11 True indel: indel (> 5bp) 90841178 90843507 92072 94399 NC_060926.1 NT_187648.1 99.4 True relocation, inconsistency = 854474 91698934 91707904 104291 95352 NC_060926.1 NT_187648.1 99.06 True local misassembly 91693578 91694470 108157 107266 NC_060926.1 NT_187648.1 97.54 True local misassembly 91690911 91692452 111291 109750 NC_060926.1 NT_187648.1 99.94 True relocation, inconsistency = 1916807 89763268 89773834 111561 122131 NC_060926.1 NT_187648.1 99.33 True local misassembly 89773835 89779109 127704 132971 NC_060926.1 NT_187648.1 99.6 True indel: indel (<= 5bp) 89779591 89782159 133457 136025 NC_060926.1 NT_187648.1 99.77 True indel: indel (<= 5bp) 89782419 89783007 136280 136865 NC_060926.1 NT_187648.1 99.35 True relocation, inconsistency = 1804402 91587410 91665255 214158 136866 NC_060926.1 NT_187648.1 98.55 True CONTIG NT_187648.1 214158 misassembled 242469360 242627123 1 161218 NC_060926.1 NT_187647.1 95.56 True CONTIG NT_187647.1 161218 correct 198563378 198569547 1 6158 NC_060927.1 NT_187649.1 99.55 True local misassembly 198576547 198577570 7158 8181 NC_060927.1 NT_187649.1 99.12 True indel: indel (> 5bp) 198577667 198579617 8182 10132 NC_060927.1 NT_187649.1 99.13 True local misassembly 198586317 198588270 15725 17663 NC_060927.1 NT_187649.1 96.26 True indel: indel (> 5bp) 198588316 198588872 17664 18220 NC_060927.1 NT_187649.1 95.33 True indel: indel (> 5bp) 198588873 198591578 18296 20998 NC_060927.1 NT_187649.1 97.78 True indel: indel (> 5bp) 198591579 198592490 21061 21972 NC_060927.1 NT_187649.1 99.78 True indel: indel (> 5bp) 198592521 198593070 21973 22522 NC_060927.1 NT_187649.1 99.82 True indel: indel (> 5bp) 198593071 198593860 22551 23340 NC_060927.1 NT_187649.1 99.75 True local misassembly 198594595 198597848 23563 26816 NC_060927.1 NT_187649.1 99.69 True local misassembly 198598476 198601691 27181 30396 NC_060927.1 NT_187649.1 99.84 True indel: indel (> 5bp) 198601692 198603208 30428 31951 NC_060927.1 NT_187649.1 99.28 True local misassembly 198603567 198605715 32090 34238 NC_060927.1 NT_187649.1 99.63 True local misassembly 198606350 198606908 34239 34797 NC_060927.1 NT_187649.1 99.28 True indel: indel (> 5bp) 198606935 198652344 34798 80225 NC_060927.1 NT_187649.1 99.77 True local misassembly 198655235 198656657 80299 81721 NC_060927.1 NT_187649.1 99.65 True local misassembly 198657004 198667724 81722 92445 NC_060927.1 NT_187649.1 99.92 True local misassembly 198668055 198668689 92446 93082 NC_060927.1 NT_187649.1 99.53 True indel: indel (> 5bp) 198668690 198669767 93124 94201 NC_060927.1 NT_187649.1 99.54 True indel: indel (> 5bp) 198669800 198680421 94202 104824 NC_060927.1 NT_187649.1 99.47 True local misassembly 198680680 198717545 105607 142467 NC_060927.1 NT_187649.1 98.76 True relocation, inconsistency = 320993 198357994 198359266 144161 142888 NC_060927.1 NT_187649.1 99.22 True indel: indel (> 5bp) 198356738 198357571 145275 144442 NC_060927.1 NT_187649.1 97.36 True local misassembly 198355557 198356273 146692 145976 NC_060927.1 NT_187649.1 99.02 True indel: indel (> 5bp) 198354550 198355509 147652 146693 NC_060927.1 NT_187649.1 99.27 True local misassembly 198336334 198351315 162896 147916 NC_060927.1 NT_187649.1 99.2 True CONTIG NT_187649.1 162896 misassembled 193026293 193409221 1 378547 NC_060928.1 NT_187650.1 96.7 True CONTIG NT_187650.1 378547 correct 71127862 71130856 1 2985 NC_060929.1 NT_187651.1 99.17 True indel: indel (> 5bp) 71130857 71150197 3031 22371 NC_060929.1 NT_187651.1 99.53 True indel: indel (> 5bp) 71150388 71234001 22372 105977 NC_060929.1 NT_187651.1 99.78 True local misassembly 71234002 71241694 106785 114475 NC_060929.1 NT_187651.1 99.78 True indel: indel (> 5bp) 71241719 71248086 114476 120830 NC_060929.1 NT_187651.1 99.51 True relocation, inconsistency = -20452 71248087 71350127 141283 243295 NC_060929.1 NT_187651.1 99.77 True indel: indel (> 5bp) 71350153 71452721 243296 345862 NC_060929.1 NT_187651.1 99.82 True indel: indel (> 5bp) 71452722 71461873 345892 355046 NC_060929.1 NT_187651.1 99.52 True relocation, inconsistency = 659972 70756007 70772140 391807 375656 NC_060929.1 NT_187651.1 99.57 True relocation, scaffold gap is present, inconsistency = 528030 71350171 71487196 441808 578824 NC_060929.1 NT_187651.1 99.88 True indel: indel (> 5bp) 71487197 71529394 578855 621078 NC_060929.1 NT_187651.1 99.73 True relocation, inconsistency = 22708 71552103 71674833 621079 743704 NC_060929.1 NT_187651.1 99.59 True local misassembly 71675644 71686598 743705 754645 NC_060929.1 NT_187651.1 99.36 True indel: indel (> 5bp) 71686624 71696134 754646 764154 NC_060929.1 NT_187651.1 99.3 True local misassembly 71696945 71700835 764155 768036 NC_060929.1 NT_187651.1 99.23 True relocation, inconsistency = 18033 71718869 71729908 768037 779097 NC_060929.1 NT_187651.1 99.15 True local misassembly 71731194 71745659 779098 793577 NC_060929.1 NT_187651.1 99.65 True local misassembly 71745660 71755891 794348 804579 NC_060929.1 NT_187651.1 99.63 True indel: indel (> 5bp) 71755892 71768214 804606 816940 NC_060929.1 NT_187651.1 99.51 True indel: indel (> 5bp) 71768243 71818464 816941 867134 NC_060929.1 NT_187651.1 99.78 True indel: indel (> 5bp) 71818497 71916565 867135 965212 NC_060929.1 NT_187651.1 99.85 True indel: indel (> 5bp) 71916566 72033194 965237 1081868 NC_060929.1 NT_187651.1 99.87 True indel: indel (> 5bp) 72033244 72095783 1081869 1144416 NC_060929.1 NT_187651.1 99.86 True CONTIG NT_187651.1 1144418 misassembled 178409850 178454800 1 44930 NC_060929.1 NT_187652.1 99.55 True indel: indel (> 5bp) 178454801 178464709 44952 54864 NC_060929.1 NT_187652.1 98.63 True local misassembly 178469287 178479105 54865 64675 NC_060929.1 NT_187652.1 99.11 True indel: indel (> 5bp) 178479134 178487128 64676 72665 NC_060929.1 NT_187652.1 99.54 True indel: indel (> 5bp) 178487226 178500504 72844 86106 NC_060929.1 NT_187652.1 99.31 True indel: indel (> 5bp) 178500556 178510407 86107 95975 NC_060929.1 NT_187652.1 98.96 True local misassembly 178511454 178512037 96291 96876 NC_060929.1 NT_187652.1 99.49 True local misassembly 178514093 178522874 97125 105904 NC_060929.1 NT_187652.1 99.77 True indel: indel (> 5bp) 178522875 178530320 105929 113376 NC_060929.1 NT_187652.1 99.56 True local misassembly 178531381 178536701 115325 120648 NC_060929.1 NT_187652.1 99.68 True indel: indel (> 5bp) 178536702 178546979 120679 130957 NC_060929.1 NT_187652.1 99.85 True CONTIG NT_187652.1 130957 correct 28381549 32485922 1 4075821 NC_060930.1 NT_113891.3 98.07 True local misassembly 32487903 32493458 4078079 4083627 NC_060930.1 NT_113891.3 96.18 True relocation, inconsistency = -7955 32495383 32503168 4093507 4101276 NC_060930.1 NT_113891.3 95.17 True local misassembly 32510563 33205127 4101972 4795265 NC_060930.1 NT_113891.3 99.02 True CONTIG NT_113891.3 4795265 misassembled 107742 299215 239 190869 NC_060931.1 NT_187653.1 98.91 True CONTIG NT_187653.1 190869 correct 930839 1069138 1 136959 NC_060932.1 NT_187655.1 98.06 True CONTIG NT_187655.1 136959 correct 1178823 1181924 1 3103 NC_060932.1 NT_187654.1 99.68 True local misassembly 1181925 1183042 8095 9212 NC_060932.1 NT_187654.1 98.21 True relocation, inconsistency = -8263 1183332 1184963 17765 19399 NC_060932.1 NT_187654.1 98.96 True indel: indel (> 5bp) 1184964 1192899 19450 27388 NC_060932.1 NT_187654.1 99.52 True local misassembly 1194281 1194805 27389 27912 NC_060932.1 NT_187654.1 98.48 True indel: indel (> 5bp) 1194990 1196718 27913 29650 NC_060932.1 NT_187654.1 98.73 True indel: indel (> 5bp) 1196719 1214288 29774 47364 NC_060932.1 NT_187654.1 99.74 True indel: indel (> 5bp) 1214289 1219410 47406 52531 NC_060932.1 NT_187654.1 99.73 True indel: indel (> 5bp) 1219411 1226995 52642 60224 NC_060932.1 NT_187654.1 99.91 True local misassembly 1229287 1238044 60682 69440 NC_060932.1 NT_187654.1 99.92 True indel: indel (> 5bp) 1238045 1242148 69514 73617 NC_060932.1 NT_187654.1 99.83 True local misassembly 1242855 1249277 74612 81017 NC_060932.1 NT_187654.1 99.49 True indel: indel (> 5bp) 1249278 1262052 81075 93870 NC_060932.1 NT_187654.1 99.53 True local misassembly 1262053 1269945 94147 102042 NC_060932.1 NT_187654.1 99.62 True indel: indel (> 5bp) 1269946 1278970 102100 111124 NC_060932.1 NT_187654.1 99.76 True indel: indel (> 5bp) 1278971 1286869 111218 119116 NC_060932.1 NT_187654.1 99.8 True local misassembly 1287547 1488084 119631 318687 NC_060932.1 NT_187654.1 98.15 True CONTIG NT_187654.1 318687 misassembled 988696 1016304 1 27610 NC_060935.1 NT_187656.1 99.98 True local misassembly 1021310 1036542 27611 42843 NC_060935.1 NT_187656.1 99.95 True local misassembly 1037632 1053225 42844 58441 NC_060935.1 NT_187656.1 99.92 True local misassembly 1054516 1068332 58442 72258 NC_060935.1 NT_187656.1 99.95 True indel: indel (> 5bp) 1068433 1076929 72259 80755 NC_060935.1 NT_187656.1 99.88 True local misassembly 1080800 1082485 80756 82441 NC_060935.1 NT_187656.1 100.0 True local misassembly 1083212 1084162 82442 83396 NC_060935.1 NT_187656.1 99.48 True local misassembly 1085751 1107030 85432 106711 NC_060935.1 NT_187656.1 99.91 True CONTIG NT_187656.1 106711 correct 1598323 1604626 1 6303 NC_060935.1 NT_187657.1 99.79 True indel: indel (> 5bp) 1604627 1612583 6332 14286 NC_060935.1 NT_187657.1 99.91 True local misassembly 1618609 1631511 14287 27192 NC_060935.1 NT_187657.1 99.69 True local misassembly 1632582 1658317 27780 53517 NC_060935.1 NT_187657.1 99.71 True indel: indel (> 5bp) 1658385 1665287 53518 60414 NC_060935.1 NT_187657.1 99.65 True indel: indel (> 5bp) 1665318 1666114 60415 61211 NC_060935.1 NT_187657.1 100.0 True indel: indel (> 5bp) 1666391 1679448 61458 74485 NC_060935.1 NT_187657.1 99.61 True indel: indel (> 5bp) 1679449 1680553 74516 75620 NC_060935.1 NT_187657.1 99.82 True local misassembly 1682927 1712489 75621 105185 NC_060935.1 NT_187657.1 99.77 True indel: indel (> 5bp) 1712490 1716945 105208 109677 NC_060935.1 NT_187657.1 99.35 True local misassembly 1719269 1725693 109678 116090 NC_060935.1 NT_187657.1 99.32 True local misassembly 1726210 1750231 116245 140294 NC_060935.1 NT_187657.1 99.62 True indel: indel (> 5bp) 1750266 1754584 140295 144613 NC_060935.1 NT_187657.1 99.88 True local misassembly 1756300 1769899 144736 158335 NC_060935.1 NT_187657.1 99.94 True indel: indel (> 5bp) 1769951 1772132 158336 160517 NC_060935.1 NT_187657.1 99.91 True indel: indel (> 5bp) 1772279 1776277 160518 164514 NC_060935.1 NT_187657.1 99.62 True indel: indel (> 5bp) 1776318 1826427 164515 214625 NC_060935.1 NT_187657.1 99.91 True CONTIG NT_187657.1 214625 correct 10674376 11246565 1 572349 NC_060936.1 NT_187658.1 99.81 True CONTIG NT_187658.1 572349 correct 20707164 20712582 1 5421 NC_060939.1 NT_187659.1 99.83 True local misassembly 20712583 20715093 5681 8191 NC_060939.1 NT_187659.1 99.56 True local misassembly 20715430 20716742 8192 9506 NC_060939.1 NT_187659.1 99.62 True local misassembly 20717462 20907316 10214 193034 NC_060939.1 NT_187659.1 95.11 True CONTIG NT_187659.1 196384 correct 25608232 25935280 1 325986 NC_060939.1 NT_187660.1 99.64 True relocation, scaffold gap is present, inconsistency = -113770 25982333 26581421 486809 1080185 NC_060939.1 NT_187660.1 98.84 True fake: scaffold gap size wrong estimation (local) 26694756 27740302 1192196 2233666 NC_060939.1 NT_187660.1 99.39 True local misassembly 27741474 28229567 2234940 2721161 NC_060939.1 NT_187660.1 99.3 True relocation, inconsistency = 59237 28288805 28323226 2755670 2721162 NC_060939.1 NT_187660.1 99.43 True fake: scaffold gap size wrong estimation (local) 28229697 28261225 2814807 2783286 NC_060939.1 NT_187660.1 99.62 True relocation, inconsistency = 61880 28323106 30102908 2814808 4593906 NC_060939.1 NT_187660.1 99.76 True relocation, scaffold gap is present, inconsistency = 72428 30279147 30743219 4697717 5161414 NC_060939.1 NT_187660.1 99.63 True CONTIG NT_187660.1 5161414 misassembled 278367 324744 45988 1 NC_060941.1 NT_187662.1 95.01 True local misassembly 274378 276570 49117 46925 NC_060941.1 NT_187662.1 99.5 True local misassembly 266049 273892 56959 49118 NC_060941.1 NT_187662.1 99.81 True indel: indel (> 5bp) 261101 266048 61939 56998 NC_060941.1 NT_187662.1 99.74 True local misassembly 239741 260017 82474 62196 NC_060941.1 NT_187662.1 99.88 True local misassembly 236660 239415 85230 82475 NC_060941.1 NT_187662.1 100.0 True local misassembly 235536 236445 86140 85231 NC_060941.1 NT_187662.1 99.78 True local misassembly 229342 232396 89195 86141 NC_060941.1 NT_187662.1 99.77 True local misassembly 219915 224994 94313 89234 NC_060941.1 NT_187662.1 99.86 True indel: indel (> 5bp) 215046 219914 99350 94478 NC_060941.1 NT_187662.1 99.22 True indel: indel (> 5bp) 213919 214760 100604 99763 NC_060941.1 NT_187662.1 99.41 True local misassembly 206224 213610 108570 101184 NC_060941.1 NT_187662.1 99.74 True local misassembly 199107 204921 115959 110144 NC_060941.1 NT_187662.1 99.62 True local misassembly 185269 198658 131125 117726 NC_060941.1 NT_187662.1 99.74 True local misassembly 181001 181600 131725 131126 NC_060941.1 NT_187662.1 95.83 True local misassembly 173127 179124 137721 131726 NC_060941.1 NT_187662.1 99.83 True CONTIG NT_187662.1 137721 correct 847147 1003467 1 157099 NC_060941.1 NT_187664.1 95.03 True CONTIG NT_187664.1 157099 correct 36993813 37115726 1 121955 NC_060941.1 NT_187661.1 99.78 True indel: indel (<= 5bp) 37115767 37196024 122000 202284 NC_060941.1 NT_187661.1 99.74 True relocation, inconsistency = 123933 37319958 37439446 202285 321761 NC_060941.1 NT_187661.1 99.68 True relocation, inconsistency = 1546041 38985488 38989526 325800 321762 NC_060941.1 NT_187661.1 99.56 True CONTIG NT_187661.1 325800 misassembled 42131262 42162613 31344 1 NC_060941.1 NW_003871093.1 99.8 True relocation, inconsistency = -10305 42104994 42131261 67870 41650 NC_060941.1 NW_003871093.1 99.56 True relocation, inconsistency = 11298 42073489 42093695 88070 67871 NC_060941.1 NW_003871093.1 99.8 True CONTIG NW_003871093.1 88070 misassembled 46163263 47351057 1 1226549 NC_060941.1 NT_187663.1 96.62 True relocation, inconsistency = 217545 47568603 47765239 1226550 1423190 NC_060941.1 NT_187663.1 99.81 True CONTIG NT_187663.1 1423190 misassembled 78725465 78898538 1 174061 NC_060942.1 NT_187665.1 95.56 True CONTIG NT_187665.1 174061 correct 79169439 79176807 1 7370 NC_060942.1 NT_187666.1 99.8 True indel: indel (> 5bp) 79176808 79199698 7419 30297 NC_060942.1 NT_187666.1 99.63 True indel: indel (> 5bp) 79199761 79249218 30298 79757 NC_060942.1 NT_187666.1 99.92 True local misassembly 79251945 79252800 80631 81489 NC_060942.1 NT_187666.1 96.74 True local misassembly 79254815 79255427 82394 83008 NC_060942.1 NT_187666.1 96.75 True local misassembly 79256327 79257072 83216 83959 NC_060942.1 NT_187666.1 97.72 True local misassembly 79258234 79259141 84272 85177 NC_060942.1 NT_187666.1 96.48 True indel: indel (> 5bp) 79259301 79259936 85178 85814 NC_060942.1 NT_187666.1 96.86 True local misassembly 79263745 79280543 86056 102853 NC_060942.1 NT_187666.1 99.92 True local misassembly 79281211 79281949 103151 103889 NC_060942.1 NT_187666.1 98.78 True local misassembly 79283060 79286113 103890 106943 NC_060942.1 NT_187666.1 99.97 True local misassembly 79288000 79291943 107976 111917 NC_060942.1 NT_187666.1 99.67 True local misassembly 79292515 79320539 112093 140112 NC_060942.1 NT_187666.1 99.9 True indel: indel (> 5bp) 79320575 79338173 140113 157710 NC_060942.1 NT_187666.1 99.88 True CONTIG NT_187666.1 157710 correct 57104135 57300997 1 195593 NC_060943.1 NW_003571055.2 98.81 True fake: scaffold gap size wrong estimation (local) 57364430 57506337 256658 394095 NC_060943.1 NW_003571055.2 96.43 True relocation, scaffold gap is present, inconsistency = 364173 57875526 57898306 399111 421901 NC_060943.1 NW_003571055.2 99.73 True indel: indel (> 5bp) 57898341 57913546 421902 437103 NC_060943.1 NW_003571055.2 99.48 True local misassembly 57913663 57924374 437595 448332 NC_060943.1 NW_003571055.2 98.17 True relocation, inconsistency = -26982 57933081 57976218 484021 527165 NC_060943.1 NW_003571055.2 98.94 True indel: indel (> 5bp) 57976243 57988869 527166 539788 NC_060943.1 NW_003571055.2 99.79 True indel: indel (> 5bp) 57988921 58010600 539789 561505 NC_060943.1 NW_003571055.2 99.53 True indel: indel (> 5bp) 58010601 58059939 561530 610842 NC_060943.1 NW_003571055.2 99.66 True indel: indel (> 5bp) 58060089 58069653 610843 620429 NC_060943.1 NW_003571055.2 99.73 True local misassembly 58069654 58118409 620761 669511 NC_060943.1 NW_003571055.2 99.72 True indel: indel (> 5bp) 58118474 58123506 669512 674540 NC_060943.1 NW_003571055.2 98.89 True indel: indel (> 5bp) 58123507 58127112 674584 678177 NC_060943.1 NW_003571055.2 99.31 True indel: indel (> 5bp) 58127161 58159039 678178 710044 NC_060943.1 NW_003571055.2 99.61 True local misassembly 58159347 58163421 710045 714146 NC_060943.1 NW_003571055.2 99.07 True local misassembly 58163625 58170783 714147 721305 NC_060943.1 NW_003571055.2 99.9 True indel: indel (> 5bp) 58170891 58173023 721306 723437 NC_060943.1 NW_003571055.2 99.58 True local misassembly 58173329 58178808 724041 729520 NC_060943.1 NW_003571055.2 99.91 True CONTIG NW_003571055.2 729520 misassembled 42557239 42622357 1 63657 NC_060946.1 NW_004504305.1 96.96 True relocation, inconsistency = -13693 42608665 42617666 63658 72647 NC_060946.1 NW_004504305.1 99.55 True indel: stretch of mismatches 42617667 42619032 72648 74013 NC_060946.1 NW_004504305.1 99.49 True CONTIG NW_004504305.1 74013 misassembled 161422 163346 1 1927 NC_060948.1 NT_187667.1 98.91 True local misassembly 163691 165483 1928 3694 NC_060948.1 NT_187667.1 97.27 True indel: indel (<= 5bp) 165640 174727 3850 12918 NC_060948.1 NT_187667.1 98.69 True indel: indel (> 5bp) 174728 175346 12966 13569 NC_060948.1 NT_187667.1 95.96 True local misassembly 175777 177099 14097 15418 NC_060948.1 NT_187667.1 99.17 True local misassembly 178035 181807 15895 19673 NC_060948.1 NT_187667.1 97.75 True indel: indel (> 5bp) 181840 186351 19674 24190 NC_060948.1 NT_187667.1 99.47 True indel: indel (> 5bp) 186514 187328 24191 25005 NC_060948.1 NT_187667.1 99.75 True indel: indel (> 5bp) 187356 191681 25006 29315 NC_060948.1 NT_187667.1 98.45 True indel: indel (> 5bp) 191919 193378 29416 30879 NC_060948.1 NT_187667.1 98.77 True indel: indel (> 5bp) 193379 198622 30939 36183 NC_060948.1 NT_187667.1 99.2 True local misassembly 202480 203962 36184 37665 NC_060948.1 NT_187667.1 99.06 True indel: indel (> 5bp) 203963 204555 37831 38423 NC_060948.1 NT_187667.1 98.99 True local misassembly 204556 206498 39249 41189 NC_060948.1 NT_187667.1 99.85 True indel: indel (> 5bp) 206536 214438 41190 49092 NC_060948.1 NT_187667.1 99.94 True indel: indel (> 5bp) 214492 245915 49093 80520 NC_060948.1 NT_187667.1 99.78 True indel: indel (> 5bp) 245916 253410 80547 88045 NC_060948.1 NT_187667.1 99.63 True local misassembly 253909 254746 88210 89047 NC_060948.1 NT_187667.1 99.76 True indel: indel (> 5bp) 254747 258253 89213 92719 NC_060948.1 NT_187667.1 99.8 True indel: indel (> 5bp) 258254 263449 92754 97936 NC_060948.1 NT_187667.1 99.44 True local misassembly 264035 265262 97937 99163 NC_060948.1 NT_187667.1 98.45 True local misassembly 265759 266327 99164 99732 NC_060948.1 NT_187667.1 99.65 True local misassembly 266652 268322 99835 101525 NC_060948.1 NT_187667.1 96.92 True indel: indel (> 5bp) 268323 271444 101599 104716 NC_060948.1 NT_187667.1 99.52 True local misassembly 275121 279001 105293 109151 NC_060948.1 NT_187667.1 98.76 True local misassembly 279002 292380 109531 122923 NC_060948.1 NT_187667.1 99.45 True local misassembly 292846 299100 122924 129199 NC_060948.1 NT_187667.1 98.73 True indel: indel (> 5bp) 299124 299696 129200 129771 NC_060948.1 NT_187667.1 97.73 True local misassembly 300232 304911 129772 134441 NC_060948.1 NT_187667.1 99.06 True local misassembly 305293 306953 134442 136106 NC_060948.1 NT_187667.1 99.22 True indel: indel (> 5bp) 306954 315905 136272 145245 NC_060948.1 NT_187667.1 99.67 True local misassembly 317343 326022 145246 153923 NC_060948.1 NT_187667.1 99.86 True local misassembly 331319 334255 154484 157408 NC_060948.1 NT_187667.1 99.01 True local misassembly 334256 347188 157806 170745 NC_060948.1 NT_187667.1 99.61 True indel: indel (> 5bp) 347285 347835 170746 171296 NC_060948.1 NT_187667.1 100.0 True local misassembly 348519 354248 171674 177406 NC_060948.1 NT_187667.1 99.49 True local misassembly 354809 362733 178146 186068 NC_060948.1 NT_187667.1 99.55 True local misassembly 363262 363812 187653 188203 NC_060948.1 NT_187667.1 99.09 True local misassembly 363813 373999 188424 198608 NC_060948.1 NT_187667.1 99.77 True indel: indel (> 5bp) 374062 375589 198609 200134 NC_060948.1 NT_187667.1 99.35 True local misassembly 380653 385152 200665 205157 NC_060948.1 NT_187667.1 99.13 True local misassembly 385477 387009 205158 206691 NC_060948.1 NT_187667.1 99.8 True indel: indel (> 5bp) 387034 388779 206692 208451 NC_060948.1 NT_187667.1 98.86 True indel: indel (> 5bp) 388780 395071 208491 214788 NC_060948.1 NT_187667.1 99.63 True indel: indel (> 5bp) 395072 407635 214912 227467 NC_060948.1 NT_187667.1 99.69 True local misassembly 409095 410422 228340 229664 NC_060948.1 NT_187667.1 99.55 True local misassembly 411022 419226 229665 237884 NC_060948.1 NT_187667.1 99.14 True indel: indel (> 5bp) 419370 424230 237885 242745 NC_060948.1 NT_187667.1 99.88 True indel: indel (> 5bp) 424293 438271 242746 256744 NC_060948.1 NT_187667.1 99.34 True indel: indel (> 5bp) 438357 455639 256745 274009 NC_060948.1 NT_187667.1 99.84 True CONTIG NT_187667.1 274009 correct 198563378 198569547 1 6158 NC_060927.1 NT_187678.1 99.55 True local misassembly 198576547 198577570 7158 8181 NC_060927.1 NT_187678.1 99.12 True indel: indel (> 5bp) 198577667 198578706 8182 9221 NC_060927.1 NT_187678.1 100.0 True local misassembly 198579715 198584142 9222 13649 NC_060927.1 NT_187678.1 99.95 True indel: indel (> 5bp) 198584191 198586148 13650 15607 NC_060927.1 NT_187678.1 99.85 True indel: indel (> 5bp) 198586197 198588870 15608 18311 NC_060927.1 NT_187678.1 98.74 True indel: indel (> 5bp) 198589230 198594338 18551 23644 NC_060927.1 NT_187678.1 99.63 True indel: indel (> 5bp) 198594339 198597861 23677 27199 NC_060927.1 NT_187678.1 99.94 True local misassembly 198598456 198605705 27557 34806 NC_060927.1 NT_187678.1 99.99 True local misassembly 198606173 198634823 35350 64024 NC_060927.1 NT_187678.1 99.75 True indel: indel (> 5bp) 198634824 198641022 64050 70247 NC_060927.1 NT_187678.1 99.53 True local misassembly 198641023 198649274 70761 79005 NC_060927.1 NT_187678.1 98.93 True indel: indel (> 5bp) 198649304 198650730 79006 80431 NC_060927.1 NT_187678.1 99.37 True indel: indel (> 5bp) 198650755 198652014 80432 81691 NC_060927.1 NT_187678.1 99.44 True local misassembly 198655342 198656629 83292 84577 NC_060927.1 NT_187678.1 99.07 True indel: indel (> 5bp) 198656630 198657140 84623 85133 NC_060927.1 NT_187678.1 95.5 True local misassembly 198657252 198667724 85605 96089 NC_060927.1 NT_187678.1 99.6 True local misassembly 198668055 198668689 96090 96726 NC_060927.1 NT_187678.1 99.53 True indel: indel (> 5bp) 198668690 198669767 96768 97845 NC_060927.1 NT_187678.1 99.54 True indel: indel (> 5bp) 198669800 198680421 97846 108468 NC_060927.1 NT_187678.1 99.47 True local misassembly 198680680 198717545 109251 146111 NC_060927.1 NT_187678.1 98.76 True relocation, inconsistency = 320993 198357994 198359266 147805 146532 NC_060927.1 NT_187678.1 99.22 True indel: indel (> 5bp) 198356738 198357571 148919 148086 NC_060927.1 NT_187678.1 97.36 True local misassembly 198355557 198356273 150336 149620 NC_060927.1 NT_187678.1 99.02 True indel: indel (> 5bp) 198354550 198355509 151296 150337 NC_060927.1 NT_187678.1 99.27 True local misassembly 198336334 198351315 166540 151560 NC_060927.1 NT_187678.1 99.2 True CONTIG NT_187678.1 166540 misassembled 192718540 192736528 1 18587 NC_060928.1 NT_187679.1 95.74 True indel: indel (> 5bp) 192736639 193272050 18588 555799 NC_060928.1 NT_187679.1 96.21 True CONTIG NT_187679.1 555799 correct 28609198 28741517 1 132470 NC_060930.1 NT_167245.2 99.39 True fake: scaffold gap size wrong estimation (local) 28849581 29225911 240376 616780 NC_060930.1 NT_167245.2 99.81 True fake: scaffold gap size wrong estimation (local) 29243949 29940634 634808 1332276 NC_060930.1 NT_167245.2 99.38 True fake: scaffold gap size wrong estimation (local) 29946892 30439457 1338535 1831105 NC_060930.1 NT_167245.2 99.99 True fake: scaffold gap size wrong estimation (local) 30439966 30720073 1831616 2111710 NC_060930.1 NT_167245.2 99.99 True fake: scaffold gap size wrong estimation (local) 30722591 31209039 2114229 2600672 NC_060930.1 NT_167245.2 100.0 True fake: scaffold gap size wrong estimation (local) 31323630 32013096 2718031 3401302 NC_060930.1 NT_167245.2 98.83 True fake: scaffold gap size wrong estimation (local) 32087520 32339094 3475720 3730040 NC_060930.1 NT_167245.2 97.23 True relocation, scaffold gap is present, inconsistency = -18154 32424833 32446671 3833933 3855703 NC_060930.1 NT_167245.2 97.42 True local misassembly 32447028 32451114 3855704 3859787 NC_060930.1 NT_167245.2 95.47 True local misassembly 32451115 32455120 3865831 3869827 NC_060930.1 NT_167245.2 95.48 True local misassembly 32475235 32778673 3893009 4200867 NC_060930.1 NT_167245.2 98.01 True fake: scaffold gap size wrong estimation (local) 32799218 32926349 4221393 4348495 NC_060930.1 NT_167245.2 99.72 True fake: scaffold gap size wrong estimation (local) 32949064 33182661 4371210 4604811 NC_060930.1 NT_167245.2 99.9 True CONTIG NT_167245.2 4604811 misassembled 1365899 1594783 1 229282 NC_060932.1 NT_187680.1 99.13 True CONTIG NT_187680.1 229282 correct 988696 1078038 1 88208 NC_060935.1 NT_187681.1 95.16 True local misassembly 1078886 1079877 89036 90028 NC_060935.1 NT_187681.1 97.38 True indel: indel (> 5bp) 1080043 1080997 90029 90983 NC_060935.1 NT_187681.1 97.8 True local misassembly 1086239 1086963 90984 91708 NC_060935.1 NT_187681.1 99.86 True local misassembly 1087200 1129745 91709 134265 NC_060935.1 NT_187681.1 99.96 True indel: indel (> 5bp) 1129746 1149079 134313 153672 NC_060935.1 NT_187681.1 99.77 True local misassembly 1150109 1163365 153932 167188 NC_060935.1 NT_187681.1 99.98 True relocation, inconsistency = 7071 1170730 1184874 167482 181630 NC_060935.1 NT_187681.1 99.79 True indel: indel (> 5bp) 1184875 1197235 181677 193974 NC_060935.1 NT_187681.1 99.03 True indel: indel (> 5bp) 1197266 1207657 193975 204346 NC_060935.1 NT_187681.1 99.41 True indel: indel (> 5bp) 1207752 1220058 204347 216629 NC_060935.1 NT_187681.1 99.49 True indel: indel (> 5bp) 1220059 1221737 216692 218370 NC_060935.1 NT_187681.1 99.76 True CONTIG NT_187681.1 218612 misassembled 57104135 57301036 1 195632 NC_060943.1 NW_003571056.2 98.81 True fake: scaffold gap size wrong estimation (local) 57830840 57865214 720633 754864 NC_060943.1 NW_003571056.2 98.7 True fake: not a misassembly (possible transposable element) 57880695 57886759 755523 761587 NC_060943.1 NW_003571056.2 99.84 True fake: not a misassembly (possible transposable element) 57926059 57959648 811630 845211 NC_060943.1 NW_003571056.2 99.6 True fake: scaffold gap size wrong estimation (local) 57991602 58178808 877278 1064304 NC_060943.1 NW_003571056.2 98.75 True CONTIG NW_003571056.2 1064304 correct 42557239 42733261 1 176103 NC_060946.1 NT_187682.1 99.85 True CONTIG NT_187682.1 176103 correct 198563378 198569547 1 6158 NC_060927.1 NT_187688.1 99.55 True local misassembly 198576547 198577570 7158 8181 NC_060927.1 NT_187688.1 99.12 True indel: indel (> 5bp) 198577667 198579617 8182 10132 NC_060927.1 NT_187688.1 99.13 True local misassembly 198586317 198588270 15725 17663 NC_060927.1 NT_187688.1 96.26 True indel: indel (> 5bp) 198588316 198588872 17664 18220 NC_060927.1 NT_187688.1 95.33 True indel: indel (> 5bp) 198588873 198591578 18296 20998 NC_060927.1 NT_187688.1 97.78 True indel: indel (> 5bp) 198591579 198592490 21061 21972 NC_060927.1 NT_187688.1 99.78 True indel: indel (> 5bp) 198592521 198593070 21973 22522 NC_060927.1 NT_187688.1 99.82 True indel: indel (> 5bp) 198593071 198593860 22551 23340 NC_060927.1 NT_187688.1 99.75 True local misassembly 198594595 198597848 23563 26816 NC_060927.1 NT_187688.1 99.69 True local misassembly 198598476 198601691 27181 30396 NC_060927.1 NT_187688.1 99.84 True indel: indel (> 5bp) 198601692 198603208 30428 31951 NC_060927.1 NT_187688.1 99.28 True local misassembly 198603567 198605715 32090 34238 NC_060927.1 NT_187688.1 99.63 True local misassembly 198606350 198606908 34239 34797 NC_060927.1 NT_187688.1 99.28 True indel: indel (> 5bp) 198606935 198652105 34798 79984 NC_060927.1 NT_187688.1 99.79 True local misassembly 198655019 198667724 80288 93007 NC_060927.1 NT_187688.1 99.58 True local misassembly 198668055 198668689 93008 93644 NC_060927.1 NT_187688.1 99.53 True indel: indel (> 5bp) 198668690 198669767 93686 94763 NC_060927.1 NT_187688.1 99.54 True indel: indel (> 5bp) 198669800 198680421 94764 105386 NC_060927.1 NT_187688.1 99.47 True local misassembly 198680680 198717545 106169 143029 NC_060927.1 NT_187688.1 98.76 True relocation, inconsistency = 320993 198357994 198359266 144723 143450 NC_060927.1 NT_187688.1 99.22 True indel: indel (> 5bp) 198356738 198357571 145837 145004 NC_060927.1 NT_187688.1 97.36 True local misassembly 198355557 198356273 147254 146538 NC_060927.1 NT_187688.1 99.02 True indel: indel (> 5bp) 198354550 198355509 148214 147255 NC_060927.1 NT_187688.1 99.27 True local misassembly 198336334 198351315 163458 148478 NC_060927.1 NT_187688.1 99.2 True CONTIG NT_187688.1 163458 misassembled 28609198 28749335 1 140097 NC_060930.1 NT_167246.2 99.3 True fake: scaffold gap size wrong estimation (local) 28787891 30595752 178666 2041800 NC_060930.1 NT_167246.2 99.2 True fake: scaffold gap size wrong estimation (local) 30604454 30800982 2050502 2246548 NC_060930.1 NT_167246.2 99.29 True fake: scaffold gap size wrong estimation (local) 30825840 30860980 2271407 2306603 NC_060930.1 NT_167246.2 98.91 True fake: scaffold gap size wrong estimation (local) 30873192 30906425 2319017 2351932 NC_060930.1 NT_167246.2 98.02 True local misassembly 30910141 31068429 2352834 2511282 NC_060930.1 NT_167246.2 99.53 True fake: scaffold gap size wrong estimation (local) 31092490 31104089 2535355 2546949 NC_060930.1 NT_167246.2 99.16 True indel: indel (> 5bp) 31104090 31157505 2546978 2600393 NC_060930.1 NT_167246.2 99.45 True indel: indel (> 5bp) 31157530 31177313 2600394 2620190 NC_060930.1 NT_167246.2 98.6 True relocation, inconsistency = -9796 31177341 31184778 2630014 2637438 NC_060930.1 NT_167246.2 99.34 True indel: indel (> 5bp) 31184779 31223799 2637486 2676526 NC_060930.1 NT_167246.2 99.11 True indel: indel (> 5bp) 31223800 31245830 2676549 2698571 NC_060930.1 NT_167246.2 98.33 True indel: indel (> 5bp) 31245859 31283781 2698572 2736433 NC_060930.1 NT_167246.2 99.24 True local misassembly 31285836 31314283 2737768 2766223 NC_060930.1 NT_167246.2 99.66 True fake: scaffold gap size wrong estimation (local) 31353387 31463497 2805361 2915476 NC_060930.1 NT_167246.2 99.74 True fake: scaffold gap size wrong estimation (local) 31471944 31604334 2923937 3056337 NC_060930.1 NT_167246.2 99.9 True fake: scaffold gap size wrong estimation (local) 31693870 31716609 3145850 3168585 NC_060930.1 NT_167246.2 99.95 True fake: scaffold gap size wrong estimation (local) 31769640 31803967 3221601 3255741 NC_060930.1 NT_167246.2 99.17 True fake: scaffold gap size wrong estimation (local) 31917099 31954778 3368873 3406581 NC_060930.1 NT_167246.2 99.84 True fake: scaffold gap size wrong estimation (local) 31993436 32096076 3445248 3547835 NC_060930.1 NT_167246.2 99.68 True fake: scaffold gap size wrong estimation (local) 32100368 32339094 3552122 3793998 NC_060930.1 NT_167246.2 97.35 True local misassembly 32376022 32385077 3833191 3842200 NC_060930.1 NT_167246.2 95.68 True relocation, scaffold gap is present, inconsistency = -126375 32424833 32446671 4008331 4030101 NC_060930.1 NT_167246.2 97.43 True local misassembly 32447028 32451114 4030102 4034185 NC_060930.1 NT_167246.2 95.47 True local misassembly 32451115 32455120 4040229 4044225 NC_060930.1 NT_167246.2 95.48 True local misassembly 32475430 32482204 4067642 4074429 NC_060930.1 NT_167246.2 98.23 True local misassembly 32482205 32485684 4076630 4080109 NC_060930.1 NT_167246.2 96.21 True local misassembly 32487903 32493458 4082585 4088129 NC_060930.1 NT_167246.2 96.76 True relocation, inconsistency = -9656 32495456 32503168 4099783 4107484 NC_060930.1 NT_167246.2 95.14 True local misassembly 32510529 32633350 4108157 4230284 NC_060930.1 NT_167246.2 97.12 True fake: scaffold gap size wrong estimation (local) 32641476 32837913 4239476 4435910 NC_060930.1 NT_167246.2 99.73 True fake: scaffold gap size wrong estimation (local) 32877326 33079562 4475322 4677643 NC_060930.1 NT_167246.2 99.24 True CONTIG NT_167246.2 4677643 misassembled 57104135 57301036 1 195632 NC_060943.1 NW_003571057.2 98.81 True relocation, scaffold gap is present, inconsistency = -101243 57811794 57831773 807633 827616 NC_060943.1 NW_003571057.2 99.44 True indel: indel (> 5bp) 57832048 57840614 828007 836569 NC_060943.1 NW_003571057.2 97.95 True relocation, inconsistency = 18115 57859025 57874850 836865 852684 NC_060943.1 NW_003571057.2 98.29 True relocation, inconsistency = 64315 57939166 57947031 852685 860585 NC_060943.1 NW_003571057.2 99.03 True fake: scaffold gap size wrong estimation (local) 57991602 58178808 904815 1091841 NC_060943.1 NW_003571057.2 98.75 True CONTIG NW_003571057.2 1091841 misassembled 198336334 198351315 1 14981 NC_060927.1 NT_187689.1 99.2 True local misassembly 198354550 198355509 15245 16204 NC_060927.1 NT_187689.1 99.27 True indel: indel (> 5bp) 198355557 198356273 16205 16921 NC_060927.1 NT_187689.1 99.02 True local misassembly 198356738 198357571 17622 18455 NC_060927.1 NT_187689.1 97.36 True indel: indel (> 5bp) 198357994 198359266 18736 20009 NC_060927.1 NT_187689.1 99.22 True relocation, inconsistency = 320993 198680680 198717545 57290 20430 NC_060927.1 NT_187689.1 98.76 True local misassembly 198669800 198680421 68695 58073 NC_060927.1 NT_187689.1 99.47 True indel: indel (> 5bp) 198668690 198669767 69773 68696 NC_060927.1 NT_187689.1 99.54 True indel: indel (> 5bp) 198668055 198668689 70451 69815 NC_060927.1 NT_187689.1 99.53 True local misassembly 198657252 198667724 80936 70452 NC_060927.1 NT_187689.1 99.6 True local misassembly 198656630 198657140 81918 81408 NC_060927.1 NT_187689.1 95.5 True indel: indel (> 5bp) 198655342 198656629 83249 81964 NC_060927.1 NT_187689.1 99.07 True local misassembly 198650755 198652014 86109 84850 NC_060927.1 NT_187689.1 99.44 True indel: indel (> 5bp) 198649304 198650730 87535 86110 NC_060927.1 NT_187689.1 99.37 True indel: indel (> 5bp) 198641023 198649274 95780 87536 NC_060927.1 NT_187689.1 98.93 True local misassembly 198634824 198641022 102491 96294 NC_060927.1 NT_187689.1 99.53 True indel: indel (> 5bp) 198606935 198634823 130435 102517 NC_060927.1 NT_187689.1 99.46 True indel: indel (> 5bp) 198606350 198606908 130994 130436 NC_060927.1 NT_187689.1 99.28 True local misassembly 198603567 198605715 133143 130995 NC_060927.1 NT_187689.1 99.63 True local misassembly 198601692 198603208 134805 133282 NC_060927.1 NT_187689.1 99.28 True indel: indel (> 5bp) 198598507 198601691 138021 134837 NC_060927.1 NT_187689.1 99.91 True local misassembly 198594755 198597882 141278 138142 NC_060927.1 NT_187689.1 99.43 True indel: indel (> 5bp) 198593779 198594754 142350 141375 NC_060927.1 NT_187689.1 98.16 True indel: indel (> 5bp) 198593071 198593778 143090 142383 NC_060927.1 NT_187689.1 99.86 True local misassembly 198589335 198592426 146866 143791 NC_060927.1 NT_187689.1 98.54 True local misassembly 198585664 198587459 149442 147662 NC_060927.1 NT_187689.1 96.27 True local misassembly 198578764 198579584 154762 153942 NC_060927.1 NT_187689.1 95.74 True indel: indel (> 5bp) 198577584 198578667 155846 154763 NC_060927.1 NT_187689.1 97.42 True indel: indel (> 5bp) 198576953 198577535 156429 155847 NC_060927.1 NT_187689.1 99.31 True local misassembly 198555697 198569547 172265 158412 NC_060927.1 NT_187689.1 99.65 True indel: indel (> 5bp) 198545598 198555672 182360 172266 NC_060927.1 NT_187689.1 99.54 True indel: indel (> 5bp) 198541740 198545555 186174 182361 NC_060927.1 NT_187689.1 99.58 True indel: indel (> 5bp) 198540762 198541739 187241 186263 NC_060927.1 NT_187689.1 99.49 True local misassembly 198535242 198540272 192272 187242 NC_060927.1 NT_187689.1 99.82 True indel: indel (> 5bp) 198532850 198535241 194691 192296 NC_060927.1 NT_187689.1 99.58 True indel: indel (> 5bp) 198530297 198532849 197351 194800 NC_060927.1 NT_187689.1 99.41 True CONTIG NT_187689.1 197351 misassembled 28609198 28738610 1 129556 NC_060930.1 NT_167247.2 99.4 True fake: scaffold gap size wrong estimation (local) 28741514 28782881 132459 173844 NC_060930.1 NT_167247.2 99.86 True fake: scaffold gap size wrong estimation (local) 28790202 28832479 181173 223453 NC_060930.1 NT_167247.2 99.89 True fake: scaffold gap size wrong estimation (local) 28886119 28987228 277162 378243 NC_060930.1 NT_167247.2 99.8 True fake: scaffold gap size wrong estimation (local) 29007817 29094953 398831 485930 NC_060930.1 NT_167247.2 99.73 True fake: scaffold gap size wrong estimation (local) 29163885 29280305 554873 671014 NC_060930.1 NT_167247.2 99.46 True fake: scaffold gap size wrong estimation (local) 29289294 29597904 680004 988535 NC_060930.1 NT_167247.2 99.73 True fake: scaffold gap size wrong estimation (local) 29613076 29781234 1003712 1172174 NC_060930.1 NT_167247.2 98.92 True relocation, scaffold gap is present, inconsistency = -89213 29806483 30077570 1286636 1557367 NC_060930.1 NT_167247.2 99.38 True fake: scaffold gap size wrong estimation (local) 30241294 30330182 1721115 1810004 NC_060930.1 NT_167247.2 99.76 True fake: scaffold gap size wrong estimation (local) 30352670 30605555 1832539 2085427 NC_060930.1 NT_167247.2 99.88 True fake: scaffold gap size wrong estimation (local) 30704142 30756675 2183593 2236154 NC_060930.1 NT_167247.2 99.51 True fake: scaffold gap size wrong estimation (local) 30766932 30815799 2246414 2295265 NC_060930.1 NT_167247.2 99.65 True fake: scaffold gap size wrong estimation (local) 30820596 30906425 2300063 2385556 NC_060930.1 NT_167247.2 99.14 True local misassembly 30910141 31198792 2386458 2685037 NC_060930.1 NT_167247.2 95.93 True indel: indel (> 5bp) 31199176 31220715 2685227 2706808 NC_060930.1 NT_167247.2 97.43 True fake: scaffold gap size wrong estimation (local) 31317495 31452989 2806343 2941836 NC_060930.1 NT_167247.2 99.99 True fake: scaffold gap size wrong estimation (local) 31464607 31660024 2953444 3148865 NC_060930.1 NT_167247.2 99.98 True fake: scaffold gap size wrong estimation (local) 31694319 31835183 3183150 3324014 NC_060930.1 NT_167247.2 99.99 True fake: scaffold gap size wrong estimation (local) 31861110 32108419 3349940 3597232 NC_060930.1 NT_167247.2 99.83 True fake: scaffold gap size wrong estimation (local) 32164881 32339094 3653695 3830636 NC_060930.1 NT_167247.2 96.96 True local misassembly 32376022 32384811 3869498 3878243 NC_060930.1 NT_167247.2 95.86 True relocation, scaffold gap is present, inconsistency = 21577 32452431 32455120 3924286 3926976 NC_060930.1 NT_167247.2 95.29 True local misassembly 32475248 32800924 3948585 4278622 NC_060930.1 NT_167247.2 98.37 True fake: scaffold gap size wrong estimation (local) 32818989 32938929 4296702 4416587 NC_060930.1 NT_167247.2 99.87 True relocation, scaffold gap is present, inconsistency = -137872 32973139 33213227 4588669 4827813 NC_060930.1 NT_167247.2 99.41 True CONTIG NT_167247.2 4827813 misassembled 57104135 57301036 1 195632 NC_060943.1 NW_003571058.2 98.81 True fake: scaffold gap size wrong estimation (local) 57932018 57967528 819633 855149 NC_060943.1 NW_003571058.2 99.47 True fake: scaffold gap size wrong estimation (local) 57991602 58178808 879364 1066390 NC_060943.1 NW_003571058.2 98.75 True CONTIG NW_003571058.2 1066390 correct 198563378 198569547 1 6158 NC_060927.1 NT_187690.1 99.55 True local misassembly 198576547 198577570 7158 8181 NC_060927.1 NT_187690.1 99.12 True indel: indel (> 5bp) 198577667 198579617 8182 10132 NC_060927.1 NT_187690.1 99.13 True local misassembly 198586317 198588270 15725 17663 NC_060927.1 NT_187690.1 96.26 True indel: indel (> 5bp) 198588316 198588872 17664 18220 NC_060927.1 NT_187690.1 95.33 True indel: indel (> 5bp) 198588873 198591578 18296 20998 NC_060927.1 NT_187690.1 97.78 True indel: indel (> 5bp) 198591579 198592490 21061 21972 NC_060927.1 NT_187690.1 99.78 True indel: indel (> 5bp) 198592521 198593070 21973 22522 NC_060927.1 NT_187690.1 99.82 True indel: indel (> 5bp) 198593071 198593860 22551 23340 NC_060927.1 NT_187690.1 99.75 True local misassembly 198594595 198597848 23563 26816 NC_060927.1 NT_187690.1 99.69 True local misassembly 198598476 198601691 27181 30396 NC_060927.1 NT_187690.1 99.84 True indel: indel (> 5bp) 198601692 198603208 30428 31951 NC_060927.1 NT_187690.1 99.28 True local misassembly 198603567 198605715 32090 34238 NC_060927.1 NT_187690.1 99.63 True local misassembly 198606350 198606908 34239 34797 NC_060927.1 NT_187690.1 99.28 True indel: indel (> 5bp) 198606935 198652014 34798 79890 NC_060927.1 NT_187690.1 99.71 True local misassembly 198655246 198656719 80824 82297 NC_060927.1 NT_187690.1 99.05 True local misassembly 198657293 198667724 83276 93719 NC_060927.1 NT_187690.1 99.58 True local misassembly 198668055 198668689 93720 94356 NC_060927.1 NT_187690.1 99.53 True indel: indel (> 5bp) 198668690 198669767 94398 95475 NC_060927.1 NT_187690.1 99.54 True indel: indel (> 5bp) 198669800 198680421 95476 106098 NC_060927.1 NT_187690.1 99.47 True local misassembly 198680680 198717545 106881 143741 NC_060927.1 NT_187690.1 98.76 True relocation, inconsistency = 320993 198357994 198359266 145435 144162 NC_060927.1 NT_187690.1 99.22 True indel: indel (> 5bp) 198356738 198357571 146549 145716 NC_060927.1 NT_187690.1 97.36 True local misassembly 198355557 198356273 147966 147250 NC_060927.1 NT_187690.1 99.02 True indel: indel (> 5bp) 198354550 198355509 148926 147967 NC_060927.1 NT_187690.1 99.27 True local misassembly 198336334 198351315 164170 149190 NC_060927.1 NT_187690.1 99.2 True CONTIG NT_187690.1 164170 misassembled 28609198 29125464 1 516304 NC_060930.1 NT_167248.2 99.64 True fake: scaffold gap size wrong estimation (local) 29284800 31275274 675615 2675110 NC_060930.1 NT_167248.2 98.62 True fake: scaffold gap size wrong estimation (local) 31323730 31614673 2726492 3017449 NC_060930.1 NT_167248.2 99.68 True fake: scaffold gap size wrong estimation (local) 31641233 31707791 3044012 3110563 NC_060930.1 NT_167248.2 99.91 True indel: indel (> 5bp) 31707832 31785151 3110564 3187871 NC_060930.1 NT_167248.2 99.88 True indel: indel (> 5bp) 31785152 31857662 3187921 3260428 NC_060930.1 NT_167248.2 99.95 True relocation, inconsistency = 32738 31890401 31920341 3260429 3290366 NC_060930.1 NT_167248.2 99.85 True indel: indel (> 5bp) 31920366 31940420 3290367 3310422 NC_060930.1 NT_167248.2 99.95 True fake: scaffold gap size wrong estimation (local) 31993436 32485922 3363444 3856785 NC_060930.1 NT_167248.2 99.39 True local misassembly 32487903 32493458 3859043 3864591 NC_060930.1 NT_167248.2 96.22 True relocation, inconsistency = -7955 32495383 32503168 3874471 3882240 NC_060930.1 NT_167248.2 95.17 True local misassembly 32510563 32615406 3882936 3987273 NC_060930.1 NT_167248.2 96.37 True fake: scaffold gap size wrong estimation (local) 32641499 33233335 4014434 4606388 NC_060930.1 NT_167248.2 99.54 True CONTIG NT_167248.2 4606388 misassembled 57104135 57301036 1 195632 NC_060943.1 NW_003571059.2 98.81 True fake: scaffold gap size wrong estimation (local) 57815701 57846098 705633 736238 NC_060943.1 NW_003571059.2 97.35 True local misassembly 57848423 57849885 738778 740237 NC_060943.1 NW_003571059.2 95.22 True indel: indel (> 5bp) 57849886 57853977 740263 744360 NC_060943.1 NW_003571059.2 96.68 True indel: indel (> 5bp) 57854067 57856997 744361 747292 NC_060943.1 NW_003571059.2 97.03 True local misassembly 57858741 57874850 747310 763407 NC_060943.1 NW_003571059.2 98.22 True relocation, inconsistency = 64315 57939166 57965190 763408 789461 NC_060943.1 NW_003571059.2 99.48 True fake: scaffold gap size wrong estimation (local) 57991602 58178808 815657 1002683 NC_060943.1 NW_003571059.2 98.75 True CONTIG NW_003571059.2 1002683 misassembled 198563378 198569547 1 6158 NC_060927.1 NT_187691.1 99.55 True local misassembly 198576547 198577570 7158 8181 NC_060927.1 NT_187691.1 99.12 True indel: indel (> 5bp) 198577667 198579617 8182 10132 NC_060927.1 NT_187691.1 99.13 True local misassembly 198586317 198588270 15725 17663 NC_060927.1 NT_187691.1 96.26 True indel: indel (> 5bp) 198588316 198588872 17664 18220 NC_060927.1 NT_187691.1 95.33 True indel: indel (> 5bp) 198588873 198591578 18296 20998 NC_060927.1 NT_187691.1 97.78 True indel: indel (> 5bp) 198591579 198592490 21061 21972 NC_060927.1 NT_187691.1 99.78 True indel: indel (> 5bp) 198592521 198593070 21973 22522 NC_060927.1 NT_187691.1 99.82 True indel: indel (> 5bp) 198593071 198593860 22551 23340 NC_060927.1 NT_187691.1 99.75 True local misassembly 198594595 198597848 23563 26816 NC_060927.1 NT_187691.1 99.69 True local misassembly 198598476 198601691 27181 30396 NC_060927.1 NT_187691.1 99.84 True indel: indel (> 5bp) 198601692 198603208 30428 31951 NC_060927.1 NT_187691.1 99.28 True local misassembly 198603567 198605715 32090 34238 NC_060927.1 NT_187691.1 99.63 True local misassembly 198606350 198606908 34239 34797 NC_060927.1 NT_187691.1 99.28 True indel: indel (> 5bp) 198606935 198621336 34798 49209 NC_060927.1 NT_187691.1 99.4 True indel: indel (> 5bp) 198621337 198628728 49316 56723 NC_060927.1 NT_187691.1 99.6 True indel: indel (> 5bp) 198628729 198634823 56746 62851 NC_060927.1 NT_187691.1 99.3 True indel: indel (> 5bp) 198634824 198641022 62882 69067 NC_060927.1 NT_187691.1 99.29 True indel: indel (> 5bp) 198641023 198652036 69125 80131 NC_060927.1 NT_187691.1 99.79 True local misassembly 198655103 198656732 80944 82577 NC_060927.1 NT_187691.1 98.23 True local misassembly 198657244 198667724 84664 95156 NC_060927.1 NT_187691.1 99.59 True local misassembly 198668055 198668689 95157 95793 NC_060927.1 NT_187691.1 99.53 True indel: indel (> 5bp) 198668690 198669767 95835 96912 NC_060927.1 NT_187691.1 99.54 True indel: indel (> 5bp) 198669800 198680421 96913 107535 NC_060927.1 NT_187691.1 99.47 True local misassembly 198680680 198717545 108318 145178 NC_060927.1 NT_187691.1 98.76 True relocation, inconsistency = 320993 198357994 198359266 146872 145599 NC_060927.1 NT_187691.1 99.22 True indel: indel (> 5bp) 198356738 198357571 147986 147153 NC_060927.1 NT_187691.1 97.36 True local misassembly 198355557 198356273 149403 148687 NC_060927.1 NT_187691.1 99.02 True indel: indel (> 5bp) 198354550 198355509 150363 149404 NC_060927.1 NT_187691.1 99.27 True local misassembly 198336334 198351315 165607 150627 NC_060927.1 NT_187691.1 99.2 True CONTIG NT_187691.1 165607 misassembled 28562780 29427927 1 862281 NC_060930.1 NT_167249.2 99.43 True fake: scaffold gap size wrong estimation (local) 29507622 30293969 941958 1728192 NC_060930.1 NT_167249.2 99.13 True fake: scaffold gap size wrong estimation (local) 30310997 30400755 1745201 1837334 NC_060930.1 NT_167249.2 96.84 True fake: scaffold gap size wrong estimation (local) 30403014 30547474 1839595 1984051 NC_060930.1 NT_167249.2 99.97 True fake: scaffold gap size wrong estimation (local) 30561946 30616942 1998527 2053379 NC_060930.1 NT_167249.2 99.67 True fake: scaffold gap size wrong estimation (local) 30652022 30665940 2088139 2102057 NC_060930.1 NT_167249.2 100.0 True fake: scaffold gap size wrong estimation (local) 30678514 30703109 2114597 2139193 NC_060930.1 NT_167249.2 99.97 True fake: scaffold gap size wrong estimation (local) 30867675 30976219 2303721 2411904 NC_060930.1 NT_167249.2 98.8 True fake: scaffold gap size wrong estimation (local) 31026180 31594512 2461911 3040777 NC_060930.1 NT_167249.2 96.9 True fake: scaffold gap size wrong estimation (local) 31609446 31647998 3055691 3094241 NC_060930.1 NT_167249.2 99.98 True fake: scaffold gap size wrong estimation (local) 31707438 31743803 3155425 3191790 NC_060930.1 NT_167249.2 99.99 True fake: scaffold gap size wrong estimation (local) 31767086 31921462 3215069 3369449 NC_060930.1 NT_167249.2 99.98 True relocation, scaffold gap is present, inconsistency = -15029 31983684 32339094 3446700 3805035 NC_060930.1 NT_167249.2 98.41 True local misassembly 32376013 32385077 3843884 3852906 NC_060930.1 NT_167249.2 95.62 True relocation, inconsistency = -104965 32424833 32455120 3997627 4027845 NC_060930.1 NT_167249.2 96.77 True local misassembly 32475248 32486128 4049454 4060325 NC_060930.1 NT_167249.2 97.47 True local misassembly 32491046 32493458 4066145 4068557 NC_060930.1 NT_167249.2 95.61 True relocation, inconsistency = -9656 32495456 32503168 4080211 4087909 NC_060930.1 NT_167249.2 95.15 True local misassembly 32510529 32953731 4088579 4581023 NC_060930.1 NT_167249.2 98.78 True fake: scaffold gap size wrong estimation (local) 32983628 33013108 4610921 4640399 NC_060930.1 NT_167249.2 99.85 True fake: scaffold gap size wrong estimation (local) 33034966 33096655 4662259 4723978 NC_060930.1 NT_167249.2 99.62 True fake: scaffold gap size wrong estimation (local) 33147745 33157040 4775070 4784368 NC_060930.1 NT_167249.2 99.97 True fake: scaffold gap size wrong estimation (local) 33209421 33301940 4836752 4929269 NC_060930.1 NT_167249.2 99.84 True CONTIG NT_167249.2 4929269 misassembled 57104135 57360548 1 253140 NC_060943.1 NW_003571060.1 98.28 True relocation, scaffold gap is present, inconsistency = 79456 57445548 57846098 258684 657736 NC_060943.1 NW_003571060.1 98.95 True local misassembly 57848423 58178808 660276 987100 NC_060943.1 NW_003571060.1 98.05 True CONTIG NW_003571060.1 987100 misassembled 32238078 32307682 68743 1 NC_060930.1 NT_187692.1 97.4 True CONTIG NT_187692.1 76752 correct 57104135 57300997 1 195593 NC_060943.1 NW_003571061.2 98.81 True fake: scaffold gap size wrong estimation (local) 57319040 57470649 213633 361078 NC_060943.1 NW_003571061.2 96.87 True relocation, scaffold gap is present, inconsistency = 257454 57730104 57865214 363079 498191 NC_060943.1 NW_003571061.2 99.49 True relocation, inconsistency = 14822 57880695 57891261 498850 509415 NC_060943.1 NW_003571061.2 99.89 True fake: scaffold gap size wrong estimation (local) 57991575 58178808 609426 796479 NC_060943.1 NW_003571061.2 98.75 True CONTIG NW_003571061.2 796479 misassembled 57104135 57846098 1 735968 NC_060943.1 NT_187693.1 98.58 True local misassembly 57848423 58178808 738508 1066800 NC_060943.1 NT_187693.1 98.43 True CONTIG NT_187693.1 1066800 correct 57933081 57969834 36765 3 NC_060943.1 NT_187636.1 98.77 True relocation, inconsistency = -26802 57913663 57924374 83011 72274 NC_060943.1 NT_187636.1 98.17 True local misassembly 57898341 57913546 98704 83503 NC_060943.1 NT_187636.1 99.48 True indel: indel (> 5bp) 57863022 57898306 134000 98705 NC_060943.1 NT_187636.1 99.33 True relocation, inconsistency = -43096 57804918 57863021 235208 177097 NC_060943.1 NT_187636.1 99.81 True local misassembly 57791599 57804917 248807 235489 NC_060943.1 NT_187636.1 99.95 True CONTIG NT_187636.1 248807 misassembled 57848423 57963105 112897 1 NC_060943.1 NT_187637.1 97.56 True local misassembly 57791599 57846098 170399 115437 NC_060943.1 NT_187637.1 98.01 True CONTIG NT_187637.1 170399 correct 57880695 57963559 82595 1 NC_060943.1 NT_187638.1 99.09 True relocation, inconsistency = 14822 57791599 57865214 157053 83254 NC_060943.1 NT_187638.1 98.75 True CONTIG NT_187638.1 157053 misassembled 57848423 57963681 113466 1 NC_060943.1 NT_187639.1 97.96 True local misassembly 57791599 57846098 171027 116006 NC_060943.1 NT_187639.1 97.79 True CONTIG NT_187639.1 171027 correct 57933839 57953184 19320 3 NC_060943.1 NT_187640.1 99.33 True indel: indel (> 5bp) 57928674 57933816 24445 19321 NC_060943.1 NT_187640.1 99.13 True local misassembly 57927735 57928235 24946 24446 NC_060943.1 NT_187640.1 97.41 True indel: indel (> 5bp) 57898341 57927542 54162 24947 NC_060943.1 NT_187640.1 99.49 True indel: indel (> 5bp) 57863022 57898306 89461 54163 NC_060943.1 NT_187640.1 99.32 True relocation, inconsistency = -43096 57804918 57863021 190640 132558 NC_060943.1 NT_187640.1 99.84 True local misassembly 57791599 57804917 204239 190921 NC_060943.1 NT_187640.1 99.95 True CONTIG NT_187640.1 204239 misassembled 57933081 57975507 42440 2 NC_060943.1 NT_187641.1 98.85 True relocation, inconsistency = -26802 57913663 57924374 88686 77949 NC_060943.1 NT_187641.1 98.17 True local misassembly 57898341 57913546 104380 89178 NC_060943.1 NT_187641.1 99.48 True indel: indel (> 5bp) 57858741 57898306 143951 104381 NC_060943.1 NT_187641.1 99.4 True local misassembly 57854067 57856997 146900 143969 NC_060943.1 NT_187641.1 97.03 True indel: indel (> 5bp) 57849886 57853977 150998 146901 NC_060943.1 NT_187641.1 96.68 True indel: indel (> 5bp) 57848423 57849885 152483 151024 NC_060943.1 NT_187641.1 95.22 True local misassembly 57791599 57846098 209512 155023 NC_060943.1 NT_187641.1 97.79 True CONTIG NT_187641.1 209512 misassembled 57880695 57963244 81115 1 NC_060943.1 NT_187642.1 98.23 True relocation, inconsistency = 14822 57791599 57865214 155532 81774 NC_060943.1 NT_187642.1 98.9 True CONTIG NT_187642.1 155532 misassembled 57848423 57963371 113157 1 NC_060943.1 NT_187643.1 97.95 True local misassembly 57791599 57846098 170698 115697 NC_060943.1 NT_187643.1 97.83 True CONTIG NT_187643.1 170698 correct 57933081 57963360 30299 1 NC_060943.1 NT_187644.1 98.53 True relocation, inconsistency = -26982 57913663 57924374 76725 65988 NC_060943.1 NT_187644.1 98.17 True local misassembly 57898341 57913546 92418 77217 NC_060943.1 NT_187644.1 99.48 True indel: indel (> 5bp) 57880695 57898306 110041 92419 NC_060943.1 NT_187644.1 99.65 True relocation, inconsistency = 14822 57815377 57865214 160425 110700 NC_060943.1 NT_187644.1 98.87 True indel: indel (> 5bp) 57791599 57815130 184499 160686 NC_060943.1 NT_187644.1 98.68 True CONTIG NT_187644.1 184499 misassembled 57848423 57963371 113173 1 NC_060943.1 NT_187645.1 97.87 True local misassembly 57791599 57846098 170680 115714 NC_060943.1 NT_187645.1 98.06 True CONTIG NT_187645.1 170680 correct 57933839 57953266 19461 2 NC_060943.1 NT_187668.1 99.39 True indel: indel (> 5bp) 57863022 57933816 90246 19462 NC_060943.1 NT_187668.1 99.58 True relocation, inconsistency = -43231 57804918 57863021 191595 133478 NC_060943.1 NT_187668.1 99.83 True local misassembly 57791599 57804917 205194 191876 NC_060943.1 NT_187668.1 99.95 True CONTIG NT_187668.1 205194 misassembled 57848423 57963371 113157 1 NC_060943.1 NT_187669.1 97.95 True local misassembly 57791599 57846098 170665 115697 NC_060943.1 NT_187669.1 98.04 True CONTIG NT_187669.1 170665 correct 57933081 57963616 30552 1 NC_060943.1 NT_187670.1 98.55 True relocation, inconsistency = -26802 57913663 57924374 76798 66061 NC_060943.1 NT_187670.1 98.17 True local misassembly 57898341 57913546 92491 77290 NC_060943.1 NT_187670.1 99.48 True indel: indel (> 5bp) 57880695 57898306 110114 92492 NC_060943.1 NT_187670.1 99.65 True relocation, inconsistency = 14822 57791599 57865214 184516 110773 NC_060943.1 NT_187670.1 98.94 True CONTIG NT_187670.1 184516 misassembled 57814003 57846098 23 32315 NC_060943.1 NT_187671.1 97.62 True local misassembly 57848423 58006289 34855 190932 NC_060943.1 NT_187671.1 98.46 True CONTIG NT_187671.1 190932 correct 57791599 57846098 1 54979 NC_060943.1 NT_187672.1 98.03 True local misassembly 57848423 57915403 57519 123111 NC_060943.1 NT_187672.1 95.78 True CONTIG NT_187672.1 123111 correct 57848423 57963372 113136 1 NC_060943.1 NT_187673.1 97.67 True local misassembly 57791599 57846098 170701 115676 NC_060943.1 NT_187673.1 97.8 True CONTIG NT_187673.1 170701 correct 57806102 57846098 3 40241 NC_060943.1 NT_187674.1 97.97 True local misassembly 57848423 58006289 42781 198005 NC_060943.1 NT_187674.1 97.84 True CONTIG NT_187674.1 198005 correct 57794384 57863021 4 68653 NC_060943.1 NT_187675.1 99.86 True relocation, inconsistency = -43096 57863022 57898306 111750 147046 NC_060943.1 NT_187675.1 99.33 True indel: indel (> 5bp) 57898341 57913546 147047 162248 NC_060943.1 NT_187675.1 99.48 True local misassembly 57913663 57924374 162740 173477 NC_060943.1 NT_187675.1 98.17 True relocation, inconsistency = -26802 57933081 58006289 208986 282224 NC_060943.1 NT_187675.1 99.34 True CONTIG NT_187675.1 282224 misassembled 57816968 57846098 1 29316 NC_060943.1 NT_187676.1 97.43 True local misassembly 57848423 58006289 31856 187935 NC_060943.1 NT_187676.1 98.37 True CONTIG NT_187676.1 187935 correct 57802234 57865214 4 63129 NC_060943.1 NT_187677.1 98.72 True relocation, inconsistency = 14822 57880695 58006289 63788 189352 NC_060943.1 NT_187677.1 99.68 True CONTIG NT_187677.1 189352 misassembled 57818732 57846098 3 27579 NC_060943.1 NT_187683.1 96.96 True local misassembly 57848423 58006289 30119 186203 NC_060943.1 NT_187683.1 98.47 True CONTIG NT_187683.1 186203 correct 57848423 57963371 114653 1 NC_060943.1 NT_187684.1 95.76 True local misassembly 57838178 57846301 125148 117011 NC_060943.1 NT_187684.1 97.75 True relocation, inconsistency = -28523 57837661 57838177 154188 153672 NC_060943.1 NT_187684.1 98.45 True indel: indel (> 5bp) 57832048 57837660 159873 154273 NC_060943.1 NT_187684.1 98.36 True indel: indel (> 5bp) 57818070 57831773 173987 160264 NC_060943.1 NT_187684.1 99.36 True indel: indel (> 5bp) 57804918 57818069 187174 174027 NC_060943.1 NT_187684.1 99.6 True local misassembly 57791599 57804917 200773 187455 NC_060943.1 NT_187684.1 99.95 True CONTIG NT_187684.1 200773 misassembled 57848423 57963721 112649 9 NC_060943.1 NT_187685.1 97.12 True local misassembly 57791599 57846098 170148 115189 NC_060943.1 NT_187685.1 97.97 True CONTIG NT_187685.1 170148 correct 57933839 57963708 29900 1 NC_060943.1 NT_187686.1 99.44 True indel: indel (> 5bp) 57863022 57933816 100696 29901 NC_060943.1 NT_187686.1 99.39 True relocation, inconsistency = -43276 57818070 57863021 188945 143973 NC_060943.1 NT_187686.1 99.72 True indel: indel (> 5bp) 57804918 57818069 202133 188985 NC_060943.1 NT_187686.1 99.59 True local misassembly 57791599 57804917 215732 202414 NC_060943.1 NT_187686.1 99.95 True CONTIG NT_187686.1 215732 misassembled 57848423 57963371 112959 1 NC_060943.1 NT_187687.1 97.26 True local misassembly 57791599 57846098 170537 115499 NC_060943.1 NT_187687.1 97.76 True CONTIG NT_187687.1 170537 correct 57933081 57956286 23228 1 NC_060943.1 NT_113949.2 98.16 True relocation, inconsistency = -26982 57913663 57924374 69654 58917 NC_060943.1 NT_113949.2 98.17 True local misassembly 57898341 57913546 85347 70146 NC_060943.1 NT_113949.2 99.48 True indel: indel (> 5bp) 57880695 57898306 102970 85348 NC_060943.1 NT_113949.2 99.66 True relocation, inconsistency = 14822 57791599 57865214 177381 103629 NC_060943.1 NT_113949.2 98.97 True CONTIG NT_113949.2 177381 misassembled CONTIG NC_012920.1 16569 unaligned